Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
UBE2J2	118424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1190842	1190842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	UBE2J2	NM_194315	exon8	c.A569T	p.Q190L	TCGTCTTGTGCTT	.	258	68	243	0	.	90	A	1190842	T	A	1190842	3	1	1	1	0	0	0	0	1	0	0	0	16858	1812	63	4	262	4	UBE2J2	1	1190842	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10		1190842	248059779	1	1											
PADI2	11240	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	17402191	17402191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PADI2	NM_007365	exon12	c.C1438T	p.P480S	GGATGGGGACAAA	.	46	15	28	1	.	208	A	17402191	G	A	17402191	3	1	1	1	0	0	0	0	1	0	0	0	11378	1232	43	3	579	3	PADI2	1	17402191	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	16211349	17402191	231848430	2	2											
RUNX3	864	ucsc.edu;bcgsc.ca	37	1	25228849	25228849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RUNX3	NM_001031680	exon6	c.T1054C	p.S352P	AGCCAGAGGATGT	.	46	4	41	0	.	414	G	25228849	A	G	25228849	3	3	1	1	0	0	0	0	1	0	0	0	13749	304	11	2	239	2	RUNX3	1	25228849	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	7826658	25228849	224021772	3	3											
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32151294	32151294	+	Silent	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	COL16A1	NM_001856	exon29	c.A1962C	p.P654P	TCCGGATGGGCCA	.	162	36	107	0	.	98	G	32151294	T	G	32151294	2	3	1	1	0	0	0	0	0	0	0	1	3673	1451	51	5		5	COL16A1	1	32151294	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	6922445	32151294	217099327	4	4											
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86916353	86916353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CLCA2	NM_006536	exon12	c.A2092T	p.S698C	AGCATAAGCACCC	.	129	14	165	0	.	155	T	86916353	A	T	86916353	3	4	1	1	0	0	0	0	1	0	0	0	3458	72	3	4	2138	4	CLCA2	1	86916353	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	54765059	86916353	162334268	5	5											
IGSF3	3321	broad.mit.edu;bcgsc.ca	37	1	117158700	117158700	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IGSF3	NM_001542	exon4	c.421+2T>A	.	CTCCTTACCCACT	.	342	75	295	1	.	92	T	117158700	A	T	117158700	5	4	1	1	0	0	0	0	0	0	1	0	7601	405	14	4	3261	4	IGSF3	1	117158700	Splice_Site	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	30242347	117158700	132091921	6	6											
VTCN1	79679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117699311	117699311	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	VTCN1	NM_024626	exon3	c.T330C	p.V110V	ATTGCCAACTATC	.	132	38	115	0	.	90	G	117699311	A	G	117699311	2	3	1	1	0	0	0	0	0	0	0	1	17231	117	5	2		2	VTCN1	1	117699311	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	540611	117699311	131551310	7	7											
PDE4DIP	9659	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	144946701	144946701	+	Missense_Mutation	SNP	C	C	T	rs77741848	byfrequency	TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PDE4DIP	NM_001198832	exon8	c.G758A	p.R253K	ACAAGCCTCTCCT	.	211	27	257	0	C|0.976;T|0.024	663	T	144946701	C	T	144946701	3	4	1	1	0	0	0	0	1	0	0	0	11643	681	24	3	7779	3	PDE4DIP	1	144946701	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	27247390	144946701	104303920	8	8											
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153279733	153279733	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PGLYRP3	NM_052891	exon2	c.C66T	p.T22T	GACGATGGTGGGA	.	45	18	39	0	.	94	A	153279733	G	A	153279733	2	1	1	1	0	0	0	0	0	0	0	1	11795	1335	47	3		3	PGLYRP3	1	153279733	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	8333032	153279733	95970888	9	9											
NOS1AP	9722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162337003	162337003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NOS1AP	NM_014697	exon10	c.G1267T	p.D423Y	AGGCGCGACTGCT	.	43	12	41	0	.	228	T	162337003	G	T	162337003	3	4	1	1	0	0	0	0	1	0	0	0	10542	1058	37	1	1359	1	NOS1AP	1	162337003	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	9057270	162337003	86913618	10	10											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200973575	200973575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KIF21B	NM_017596	exon7	c.G909T	p.L303F	ATTGCCCAAGGCC	.	95	23	59	0	.	96	A	200973575	C	A	200973575	3	1	1	1	0	0	0	0	1	0	0	0	8289	593	21	3	4077	3	KIF21B	1	200973575	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	38636572	200973575	48277046	11	11											
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203816541	203816541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZC3H11A	NM_014827	exon15	c.A1272C	p.K424N	ACAAAAAAGCAAA	.	172	37	167	0	.	515	C	203816541	A	C	203816541	3	2	1	1	0	0	0	0	1	0	0	0	17557	11	1	5	1314	5	ZC3H11A	1	203816541	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	2842966	203816541	45434080	12	12											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	215916665	215916665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	USH2A	NM_206933	exon59	c.C11402T	p.P3801L	ATTTCGGGGATGA	.	37	8	25	0	.	115	A	215916665	G	A	215916665	3	1	1	1	0	0	0	0	1	0	0	0	17033	1232	43	3	4262	3	USH2A	1	215916665	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	12100124	215916665	33333956	13	13											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216062251	216062251	+	Silent	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	USH2A	NM_206933	exon41	c.A7740T	p.G2580G	GACATTTCCAGGA	.	108	29	91	0	.	115	A	216062251	T	A	216062251	2	1	1	1	0	0	0	0	0	0	0	1	17033	1770	62	4		4	USH2A	1	216062251	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	145586	216062251	33188370	14	14											
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	227316906	227316908	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CDC42BPA	NM_003607	exon11	c.1415_1417del	p.472_473del	AATACTGCAGAGC	.	426	107	584	0	.	549	-	227316908	GCA	-	227316906	7	5	1	1	0	1	0	1	0	0	0	0	3072	1328	46	0	3846	0	CDC42BPA	1	227316906	In_Frame_Del	DEL	GCA	TCGA-BC-4073-01B-02D-A12Z-10	11254655	227316906	21933715	15	15											
RBM34	23029	ucsc.edu;bcgsc.ca	37	1	235324541	235324541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RBM34	NM_001161533	exon1	c.A1G	p.M1V	AGGCCATTCTTAC	.	46	4	42	0	.	46	C	235324541	T	C	235324541	3	2	1	1	0	0	0	0	1	0	0	0	13131	1493	52	2	1356	2	RBM34	1	235324541	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	8007635	235324541	13926080	16	16											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237923107	237923107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RYR2	NM_001035	exon83	c.A11357C	p.D3786A	AAAAGGATGTGGG	.	166	43	144	0	.	158	C	237923107	A	C	237923107	3	2	1	1	0	0	0	0	1	0	0	0	13769	333	12	5	11687	5	RYR2	1	237923107	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	2598566	237923107	11327514	17	17											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	247582364	247582364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NLRP3	NM_183395	exon1	c.G268T	p.D90Y	AAAAGAGATGAGC	.	19	10	16	0	.	674	T	247582364	G	T	247582364	3	4	1	1	0	0	0	0	1	0	0	0	10478	942	33	3	270	3	NLRP3	1	247582364	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	9659257	247582364	1668257	18	18											
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27552031	27552031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GTF3C2	NM_001521	exon15	c.T1996G	p.C666G	TGTAGGGAAGCAG	.	97	25	65	0	.	92	C	27552031	G	C	27552031	3	2	1	1	0	0	0	0	1	0	0	0	6873	1174	41	4	763	4	GTF3C2	2	27552031	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		27552031	215647342	19	19											
EIF2B4	8890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27590024	27590024	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	EIF2B4	NM_172195	exon9	c.G990A	p.E330E	AATCTTCTCTTGC	.	81	22	79	0	.	90	T	27590024	C	T	27590024	2	4	1	1	0	0	0	0	0	0	0	1	5003	912	32	3		3	EIF2B4	2	27590024	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	37993	27590024	215609349	20	20											
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33810097	33810097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FAM98A	NM_015475	exon8	c.A1303G	p.S435G	ATCCACTTCCTGT	.	116	32	108	0	.	91	C	33810097	T	C	33810097	3	2	1	1	0	0	0	0	1	0	0	0	5656	1609	56	2	257	2	FAM98A	2	33810097	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	6220073	33810097	209389276	21	21											
SLC8A1	6546	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656603	40656603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC8A1	NM_001252624	exon1	c.G818T	p.G273V	ATCATCCCCCTCT	.	107	32	111	2	.	93	A	40656603	C	A	40656603	3	1	1	1	0	0	0	0	1	0	0	0	14706	623	22	3	2251	3	SLC8A1	2	40656603	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	6846506	40656603	202542770	22	22											
LRRTM4	80059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	77745674	77745674	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LRRTM4	NM_024993	exon3	c.T1321C	p.L441L	TCACCAAGAGGAT	.	158	55	141	1	.	94	G	77745674	A	G	77745674	2	3	1	1	0	0	0	0	0	0	0	1	9042	69	3	2		2	LRRTM4	2	77745674	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	37089071	77745674	165453699	23	23											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137928399	137928400	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.ED538DY	TTGTGAGGATCCA	.	137	42	100	1	.	.	TT	137928400	GG	TT	137928399	3	4	1	1	0	0	0	0	1	0	0	0	15877	991	35	3	1543	3	THSD7B	2	137928399	Missense_Mutation	DNP	GG	TCGA-BC-4073-01B-02D-A12Z-10	60182725	137928399	105270974	24	24											
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160665051	160665051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LY75	NM_002349	exon33	c.T4731A	p.D1577E	ATCTTCATCTTTT	.	140	40	163	0	.	90	T	160665051	A	T	160665051	3	4	1	1	0	0	0	0	1	0	0	0	9099	214	8	4	449	4	LY75	2	160665051	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	22736652	160665051	82534322	25	25											
DFNB59	494513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179325171	179325171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	DFNB59	NM_001042702	exon6	c.G764C	p.R255T	TTGAAAGAAGTAT	.	105	20	126	0	.	22	C	179325171	G	C	179325171	3	2	1	1	0	0	0	0	1	0	0	0	4456	942	33	4	782	4	DFNB59	2	179325171	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	18660120	179325171	63874202	26	26											
OSGEPL1	64172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190617632	190617632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_022353	exon6	c.G1037A	p.C346Y	AAAGTGCACTGTG	.	271	60	312	0	.	.	T	190617632	C	T	190617632	3	4	1	1	0	0	0	0	1	0	0	0	11288	710	25	3	219	3	OSGEPL1	2	190617632	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	11292461	190617632	52581741	27	27											
PMS1	5378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190718971	190718971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PMS1	NM_001128144	exon9	c.G973A	p.V325I	GAATCTGTTTTAA	.	133	28	159	0	.	1396	A	190718971	G	A	190718971	3	1	1	1	0	0	0	0	1	0	0	0	12142	1377	48	3	1003	3	PMS1	2	190718971	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	101339	190718971	52480402	28	28											
TSEN2	80746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12544973	12544973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TSEN2	NM_001145395	exon5	c.A521T	p.N174I	TGGTAAACGGGGA	.	139	43	129	1	.	90	T	12544973	A	T	12544973	3	4	1	1	0	0	0	0	1	0	0	0	16609	43	2	4	535	4	TSEN2	3	12544973	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10		12544973	185477457	29	29											
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29781252	29781252	+	Silent	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RBMS3	NM_001003793	exon5	c.C441G	p.L147L	AAATCTCCCCATT	.	98	19	124	0	.	90	G	29781252	C	G	29781252	2	3	1	1	0	0	0	0	0	0	0	1	13150	842	30	4		4	RBMS3	3	29781252	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	17236279	29781252	168241178	30	30											
SCN5A	6331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645329	38645329	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SCN5A	NM_001160160	exon12	c.T1764C	p.H588H	TTTGCCATGGAGG	.	92	31	83	1	.	98	G	38645329	A	G	38645329	2	3	1	1	0	0	0	0	0	0	0	1	13922	214	8	2		2	SCN5A	3	38645329	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	8864077	38645329	159377101	31	31											
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	42577594	42577594	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	VIPR1	NM_004624	exon13	c.C1195T	p.L399L	GCGGAGCTGAGGC	.	56	12	55	0	.	91	T	42577594	C	T	42577594	2	4	1	1	0	0	0	0	0	0	0	1	17166	796	28	3		3	VIPR1	3	42577594	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	3932265	42577594	155444836	32	32											
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45748365	45748365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SACM1L	NM_014016	exon4	c.A299G	p.Y100C	TTTCTTATAAGAA	.	188	52	240	0	.	91	G	45748365	A	G	45748365	3	3	1	1	0	0	0	0	1	0	0	0	13803	449	16	2	313	2	SACM1L	3	45748365	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	3170771	45748365	152274065	33	33											
ALAS1	211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52240032	52240032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ALAS1	NM_000688	exon7	c.G978A	p.M326I	TAAGATGATGCCA	.	131	43	123	2	.	93	A	52240032	G	A	52240032	3	1	1	1	0	0	0	0	1	0	0	0	484	1290	45	3	996	3	ALAS1	3	52240032	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	6491667	52240032	145782398	34	34											
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73453362	73453362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PDZRN3	NM_015009	exon4	c.T1103C	p.M368T	AGGGCCATGATAT	.	170	50	178	2	.	232	G	73453362	A	G	73453362	3	3	1	1	0	0	0	0	1	0	0	0	11709	217	8	2	2125	2	PDZRN3	3	73453362	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	21213330	73453362	124569068	35	35											
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134920367	134920367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	EPHB1	NM_004441	exon12	c.A2182T	p.I728F	AGGGGCATCGCTG	.	153	32	133	0	.	1492	T	134920367	A	T	134920367	3	4	1	1	0	0	0	0	1	0	0	0	5174	217	8	4	2228	4	EPHB1	3	134920367	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	61467005	134920367	63102063	36	36											
AADAC	13	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	151545693	151545693	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AADAC	NM_001086	exon5	c.T933G	p.Y311X	AAAATATCCAGGG	.	55	17	65	0	.	280	G	151545693	T	G	151545693	4	3	1	1	0	0	0	0	0	1	0	0	10	1442	50	5	951	5	AADAC	3	151545693	Nonsense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	16625326	151545693	46476737	37	37											
P2RY1	5028	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152553878	152553878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	P2RY1	NM_002563	exon1	c.A307C	p.T103P	GTGCTGACTCTGC	.	156	39	110	1	.	500	C	152553878	A	C	152553878	3	2	1	1	0	0	0	0	1	0	0	0	11346	275	10	5	309	5	P2RY1	3	152553878	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	1008185	152553878	45468552	38	38											
MME	4311	broad.mit.edu;bcgsc.ca	37	3	154832794	154832794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MME	NM_007287	exon4	c.A208G	p.I70V	CGACTGATCCAAA	.	93	5	95	1	.	516	G	154832794	A	G	154832794	3	3	1	1	0	0	0	0	1	0	0	0	9645	333	12	2	218	2	MME	3	154832794	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	2278916	154832794	43189636	39	39											
IL12A	3592	broad.mit.edu;bcgsc.ca	37	3	159713218	159713218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IL12A	NM_000882	exon7	c.C634T	p.P212S	ACTGTGCCACAAA	.	148	6	176	1	.	90	T	159713218	C	T	159713218	3	4	1	1	0	0	0	0	1	0	0	0	7624	739	26	3	660	3	IL12A	3	159713218	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	4880424	159713218	38309212	40	40											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185993350	185993350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	DGKG	NM_001346	exon10	c.G896A	p.G299D	CACAGGCCTTGCT	.	54	17	46	0	.	714	T	185993350	C	T	185993350	3	4	1	1	0	0	0	0	1	0	0	0	4469	739	26	3	1543	3	DGKG	3	185993350	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	26280132	185993350	12029080	41	41											
CHRNA9	55584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40351066	40351066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CHRNA9	NM_017581	exon4	c.A533G	p.Y178C	GGACCTACAATGG	.	197	50	197	1	.	96	G	40351066	A	G	40351066	3	3	1	1	0	0	0	0	1	0	0	0	3389	391	14	2	547	2	CHRNA9	4	40351066	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10		40351066	150803210	42	42											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55955862	55955862	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KDR	NM_002253	exon24	c.C3300T	p.S1100S	ACCTAAGGAAAAT	.	120	28	139	0	.	2298	A	55955862	G	A	55955862	2	1	1	1	0	0	0	0	0	0	0	1	8139	987	35	3		3	KDR	4	55955862	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	15604796	55955862	135198414	43	43											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56759928	56759928	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	EXOC1	NM_018261	exon15	c.G1935A	p.R645R	CAAAAGGAACTTT	.	76	23	78	0	.	950	A	56759928	G	A	56759928	2	1	1	1	0	0	0	0	0	0	0	1	5301	1165	41	3		3	EXOC1	4	56759928	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	804066	56759928	134394348	44	44											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57204730	57204730	+	Silent	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AASDH	NM_181806	exon15	c.G3135T	p.G1045G	CACTTTCCCATCA	.	222	54	201	0	.	94	A	57204730	C	A	57204730	2	1	1	1	0	0	0	0	0	0	0	1	22	842	30	3		3	AASDH	4	57204730	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	444802	57204730	133949546	45	45											
TMPRSS11F	389208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68934361	68934361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TMPRSS11F	NM_207407	exon7	c.C730A	p.L244I	CTGTGAGCAGCCA	.	148	44	93	0	.	91	T	68934361	G	T	68934361	3	4	1	1	0	0	0	0	1	0	0	0	16240	971	34	3	602	3	TMPRSS11F	4	68934361	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	11729631	68934361	122219915	46	46											
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74270094	74270094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ALB	NM_000477	exon1	c.A50G	p.Y17C	CGGCTTATTCCAG	.	361	63	350	1	.	96	G	74270094	A	G	74270094	3	3	1	1	0	0	0	0	1	0	0	0	486	449	16	2	52	2	ALB	4	74270094	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	5335733	74270094	116884182	47	47											
RASSF6	166824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74451010	74451010	+	Silent	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RASSF6	NM_201431	exon6	c.A550C	p.R184R	TGGTTCTATAGAG	.	249	77	259	0	.	319	G	74451010	T	G	74451010	2	3	1	1	0	0	0	0	0	0	0	1	13090	1530	53	5		5	RASSF6	4	74451010	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	180916	74451010	116703266	48	48											
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103228652	103228652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC39A8	NM_022154	exon3	c.T493G	p.F165V	CCACAAAAAAGGT	.	294	80	364	0	.	90	C	103228652	A	C	103228652	3	2	1	1	0	0	0	0	1	0	0	0	14624	14	1	5	990	5	SLC39A8	4	103228652	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	28777642	103228652	87925624	49	49											
HHIP	64399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	145579960	145579960	+	Missense_Mutation	SNP	C	C	T	rs149715142		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	HHIP	NM_022475	exon3	c.C491T	p.A164V	CAACTGCGGATGA	.	99	16	126	1	C|1.000;T|0.000	283	T	145579960	C	T	145579960	3	4	1	1	0	0	0	0	1	0	0	0	7092	768	27	1	501	1	HHIP	4	145579960	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	42351308	145579960	45574316	50	50											
RBM46	166863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155719022	155719022	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RBM46	NM_144979	exon3	c.G211C	p.D71H	CCTCGTGATATGT	.	135	36	161	0	.	69	C	155719022	G	C	155719022	3	2	1	1	0	0	0	0	1	0	0	0	13140	1290	45	4	217	4	RBM46	4	155719022	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	10139062	155719022	35435254	51	51											
TLL1	7092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166999180	166999180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TLL1	NM_012464	exon18	c.T2440A	p.L814I	ATCAAATTAGTAA	.	91	25	64	1	.	158	A	166999180	T	A	166999180	3	1	1	1	0	0	0	0	1	0	0	0	15942	1490	52	4	2510	4	TLL1	4	166999180	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	11280158	166999180	24155096	52	52											
FRG1	2483	broad.mit.edu;bcgsc.ca	37	4	190876266	190876266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FRG1	NM_004477	exon5	c.C392A	p.A131E	CAGATGCAATTGG	.	651	27	711	1	.	90	A	190876266	C	A	190876266	3	1	1	1	0	0	0	0	1	0	0	0	6046	710	25	3	410	3	FRG1	4	190876266	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	23877086	190876266	278010	53	53											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31983740	31983740	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PDZD2	NM_178140	exon2	c.A956T	p.Q319L	ACTTCCAATCGAG	.	156	45	164	0	.	563	T	31983740	A	T	31983740	3	4	1	1	0	0	0	0	1	0	0	0	11701	130	5	4	962	4	PDZD2	5	31983740	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10		31983740	148931520	54	54											
MCCC2	64087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70936898	70936898	+	Silent	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MCCC2	NM_022132	exon11	c.T1068A	p.V356V	ATTAGTTACAGGT	.	93	19	88	0	.	23	A	70936898	T	A	70936898	2	1	1	1	0	0	0	0	0	0	0	1	9375	1741	61	4		4	MCCC2	5	70936898	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	38953158	70936898	109978362	55	55											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127727761	127727761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FBN2	NM_001999	exon11	c.G1553C	p.R518P	TCACATCGGTAGC	.	136	24	171	0	.	146	G	127727761	C	G	127727761	3	3	1	1	0	0	0	0	1	0	0	0	5703	884	31	4	7405	4	FBN2	5	127727761	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	56790863	127727761	53187499	56	56											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137759953	137759954	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.G1388L	TGTGATGGGAGGC	.	260	74	243	0	.	.	TT	137759954	GG	TT	137759953	3	4	1	1	0	0	0	0	1	0	0	0	8127	1348	47	3	4224	3	KDM3B	5	137759953	Missense_Mutation	DNP	GG	TCGA-BC-4073-01B-02D-A12Z-10	10032192	137759953	43155307	57	57											
NRG2	9542	ucsc.edu;bcgsc.ca	37	5	139235271	139235271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NRG2	NM_013982	exon7	c.T1306C	p.C436R	TCTTGCAGTAGGC	.	57	5	50	0	.	526	G	139235271	A	G	139235271	3	3	1	1	0	0	0	0	1	0	0	0	10648	188	7	2	1290	2	NRG2	5	139235271	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	1475318	139235271	41679989	58	58											
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140176834	140176834	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDHA2	NM_031495	exon1	c.A2285T	p.E762V	CTGGGGAGGACCC	.	225	59	201	0	.	94	T	140176834	A	T	140176834	3	4	1	1	0	0	0	0	1	0	0	0	11524	304	11	4	2287	4	PCDHA2	5	140176834	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	941563	140176834	40738426	59	59											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140208267	140208267	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDHA6	NM_018909	exon1	c.G591A	p.K197K	ATTAAAGAAATCC	.	74	20	82	0	.	92	A	140208267	G	A	140208267	2	1	1	1	0	0	0	0	0	0	0	1	11528	933	33	3		3	PCDHA6	5	140208267	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	31433	140208267	40706993	60	60											
RELL2	285613	broad.mit.edu;mdanderson.org	37	5	141019591	141019591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RELL2	NM_173828	exon5	c.G608T	p.G203V	CAGGGGGTGGTCA	.	44	13	31	0	.	90	T	141019591	G	T	141019591	3	4	1	1	0	0	0	0	1	0	0	0	13219	1261	44	3	626	3	RELL2	5	141019591	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	811324	141019591	39895669	61	61											
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143586733	143586733	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KCTD16	NM_020768	exon3	c.C456T	p.P152P	CTGCCCCCCTTCC	.	77	21	72	0	.	137	T	143586733	C	T	143586733	2	4	1	1	0	0	0	0	0	0	0	1	8103	610	22	3		3	KCTD16	5	143586733	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	2567142	143586733	37328527	62	62											
SLC36A1	206358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150843185	150843185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC36A1	NM_078483	exon3	c.T215A	p.V72E	TGGCGGTGAAAAA	.	109	24	113	0	.	91	A	150843185	T	A	150843185	3	1	1	1	0	0	0	0	1	0	0	0	14593	1696	59	4	221	4	SLC36A1	5	150843185	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	7256452	150843185	30072075	63	63											
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168244433	168244433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLIT3	NM_001271946	exon8	c.A665T	p.H222L	GCCAGGTGGCAGT	.	70	22	39	0	.	95	A	168244433	T	A	168244433	3	1	1	1	0	0	0	0	1	0	0	0	14741	1696	59	4	4022	4	SLIT3	5	168244433	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	17401248	168244433	12670827	64	64											
GFOD1	54438	broad.mit.edu;ucsc.edu	37	6	13470848	13470848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GFOD1	NM_001242629	exon2	c.A268G	p.R90G	TCTTCCTCTGATG	.	42	5	47	0	.	92	C	13470848	T	C	13470848	3	2	1	1	0	0	0	0	1	0	0	0	6343	1566	54	2		2	GFOD1	6	13470848	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10		13470848	157644219	65	65											
SLC17A1	6568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25811931	25811931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC17A1	NM_005074	exon9	c.C965T	p.S322L	AAGTCTGATAACT	.	76	17	79	0	.	94	A	25811931	G	A	25811931	3	1	1	1	0	0	0	0	1	0	0	0	14416	1294	45	3	454	3	SLC17A1	6	25811931	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	12341083	25811931	145303136	66	66											
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	26032209	26032209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	HIST1H3B	NM_003537	exon1	c.G80A	p.R27H	CTCTTGCGAGCAG	.	29	10	22	0	.	92	T	26032209	C	T	26032209	3	4	1	1	0	0	0	0	1	0	0	0	7156	768	27	1	334	1	HIST1H3B	6	26032209	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	220278	26032209	145082858	67	67											
GSTA4	2941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52858985	52858985	+	Silent	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GSTA4	NM_001512	exon2	c.G57T	p.V19V	CCATCTCACGGAC	.	55	15	42	0	.	90	A	52858985	C	A	52858985	2	1	1	1	0	0	0	0	0	0	0	1	6833	813	29	3		3	GSTA4	6	52858985	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	26826776	52858985	118256082	68	68											
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76715138	76715138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IMPG1	NM_001563	exon10	c.A1001T	p.E334V	TAGACTTCCTCAC	.	358	79	344	0	.	93	A	76715138	T	A	76715138	3	1	1	1	0	0	0	0	1	0	0	0	7728	1783	62	4	1424	4	IMPG1	6	76715138	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	23856153	76715138	94399929	69	69											
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110763664	110763664	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC22A16	NM_033125	exon4	c.G966A	p.L322L	TTCTGACAGTTTA	.	76	17	66	0	.	91	T	110763664	C	T	110763664	2	4	1	1	0	0	0	0	0	0	0	1	14447	465	17	3		3	SLC22A16	6	110763664	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	34048526	110763664	60351403	70	70											
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44795852	44795852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZMIZ2	NM_174929	exon1	c.A4T	p.N2Y	CCAATGAACTCCA	.	99	17	77	0	.	137	T	44795852	A	T	44795852	3	4	1	1	0	0	0	0	1	0	0	0	17694	246	9	4	6	4	ZMIZ2	7	44795852	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10		44795852	114342811	71	71											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48318705	48318705	+	Silent	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ABCA13	NM_152701	exon18	c.T7914A	p.I2638I	AGAAATTGCTGAA	.	74	19	65	0	.	521	A	48318705	T	A	48318705	2	1	1	1	0	0	0	0	0	0	0	1	31	1800	63	4		4	ABCA13	7	48318705	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	3522853	48318705	110819958	72	72											
RNF133	168433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122338762	122338763	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RNF133	NM_139175	exon1	c.210_211del	p.70_71del	CTGCCACTCTCTT	.	85	28	90	0	.	227	-	122338763	CT	-	122338762	7	5	1	1	0	1	0	1	0	0	0	0	13439	565	20	0	923	0	RNF133	7	122338762	Frame_Shift_Del	DEL	CT	TCGA-BC-4073-01B-02D-A12Z-10	74020057	122338762	36799901	73	73											
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123594252	123594252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SPAM1	NM_153189	exon3	c.C628T	p.L210F	AAATTACTTCGGC	.	115	31	142	0	.	94	T	123594252	C	T	123594252	3	4	1	1	0	0	0	0	1	0	0	0	14986	565	20	3	630	3	SPAM1	7	123594252	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	1255490	123594252	35544411	74	74											
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139819020	139819020	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	JHDM1D	NM_030647	exon10	c.1140-1G>T	.	TAACACCTAAATG	.	81	23	110	0	.	91	A	139819020	C	A	139819020	5	1	1	1	0	0	0	0	0	0	1	0	7948	695	24	3	1734	3	JHDM1D	7	139819020	Splice_Site	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	16224768	139819020	19319643	75	75											
TAS2R40	259286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142919945	142919945	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TAS2R40	NM_176882	exon1	c.C774T	p.F258F	CATTTTCAATGCA	.	162	29	157	2	.	23	T	142919945	C	T	142919945	2	4	1	1	0	0	0	0	0	0	0	1	15575	825	29	3		3	TAS2R40	7	142919945	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	3100925	142919945	16218718	76	76											
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37693203	37693203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GPR124	NM_032777	exon13	c.C1965G	p.H655Q	CTTCCACAGCCAC	.	53	13	21	0	.	157	G	37693203	C	G	37693203	3	3	1	1	0	0	0	0	1	0	0	0	6638	477	17	4	1994	4	GPR124	8	37693203	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10		37693203	108670819	77	77											
POTEA	340441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	43152221	43152221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	POTEA	NM_001005365	exon2	c.G358A	p.D120N	CTGCTGGACAGAC	.	145	24	182	0	.	91	A	43152221	G	A	43152221	3	1	1	1	0	0	0	0	1	0	0	0	12261	1174	41	3	364	3	POTEA	8	43152221	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	5459018	43152221	103211801	78	78											
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	48508456	48508456	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KIAA0146	NM_001080394	exon9	c.C1181G	p.S394X	AAGATTCAGAAAA	.	119	31	156	0	.	68	G	48508456	C	G	48508456	4	3	1	1	0	0	0	0	0	1	0	0	8157	838	29	4	1215	4	KIAA0146	8	48508456	Nonsense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	5356235	48508456	97855566	79	79											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72975034	72975034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TRPA1	NM_007332	exon6	c.G807T	p.E269D	AGTTACCTCCACT	.	243	61	260	0	.	230	A	72975034	C	A	72975034	3	1	1	1	0	0	0	0	1	0	0	0	16574	695	24	3	2640	3	TRPA1	8	72975034	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	24466578	72975034	73388988	80	80											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133941375	133941375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TG	NM_003235	exon23	c.C4754T	p.A1585V	CCAATGCTCCTGT	.	177	52	144	0	.	145	T	133941375	C	T	133941375	3	4	1	1	0	0	0	0	1	0	0	0	15810	797	28	3	4844	3	TG	8	133941375	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	60966341	133941375	12422647	81	81											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16738381	16738381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	BNC2	NM_017637	exon2	c.G106T	p.G36W	CAACCCCACAACA	.	176	59	168	0	.	92	A	16738381	C	A	16738381	3	1	1	1	0	0	0	0	1	0	0	0	1475	594	21	3	3217	3	BNC2	9	16738381	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10		16738381	124475050	82	82											
CBWD5	220869	hgsc.bcm.edu;broad.mit.edu	37	9	70484455	70484455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CBWD5	NM_001024916	exon3	c.258delA	p.K86fs	TAAGGATTTCTCC	.	3148	257	3269	0	.	22	-	70484455	T	-	70484455	7	5	1	1	0	1	0	1	0	0	0	0	2715	1490	52	0	829	0	CBWD5	9	70484455	Frame_Shift_Del	DEL	T	TCGA-BC-4073-01B-02D-A12Z-10	53746074	70484455	70728976	83	83											
GKAP1	80318	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86403523	86403523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GKAP1	NM_025211	exon5	c.A431G	p.H144R	TTTTTGTGCTCTT	.	52	14	70	0	.	90	C	86403523	T	C	86403523	3	2	1	1	0	0	0	0	1	0	0	0	6423	1696	59	2	705	2	GKAP1	9	86403523	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	15919068	86403523	54809908	84	84											
CDC14B	8555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99285642	99285642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CDC14B	NM_033331	exon11	c.G1146C	p.E382D	TCCATTCTCCTGC	.	222	57	230	0	.	228	G	99285642	C	G	99285642	3	3	1	1	0	0	0	0	1	0	0	0	3057	912	32	4	366	4	CDC14B	9	99285642	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	12882119	99285642	41927789	85	85											
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115948581	115948581	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FKBP15	NM_015258	exon15	c.G1446A	p.Q482Q	AACGGGCTGCAGC	.	89	26	76	0	.	25	T	115948581	C	T	115948581	2	4	1	1	0	0	0	0	0	0	0	1	5905	796	28	3		3	FKBP15	9	115948581	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	16662939	115948581	25264850	86	86											
PFKP	5214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3150974	3150974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PFKP	NM_002627	exon9	c.G952A	p.D318N	GCATTCGACAGGA	.	123	31	91	1	.	253	A	3150974	G	A	3150974	3	1	1	1	0	0	0	0	1	0	0	0	11766	1058	37	1	986	1	PFKP	10	3150974	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		3150974	132383773	87	87											
KLF6	1316	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	3824157	3824157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KLF6	NM_001160125	exon2	c.G352T	p.E118X	AAAGTTCCTCGGA	.	181	54	149	1	.	1134	A	3824157	C	A	3824157	4	1	1	1	0	0	0	0	0	1	0	0	8350	864	30	3	511	3	KLF6	10	3824157	Nonsense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	673183	3824157	131710590	88	88											
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	7423775	7423775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SFMBT2	NM_001029880	exon2	c.G86A	p.G29E	AGGTCTCCATTTC	.	92	24	86	0	.	141	T	7423775	C	T	7423775	3	4	1	1	0	0	0	0	1	0	0	0	14158	855	30	3	2678	3	SFMBT2	10	7423775	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	3599618	7423775	128110972	89	89											
SUV39H2	79723	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	14938885	14938885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SUV39H2	NM_001193426	exon3	c.A218C	p.D73A	GGCCAGATTCTAC	.	61	12	68	0	.	290	C	14938885	A	C	14938885	3	2	1	1	0	0	0	0	1	0	0	0	15410	333	12	5	40	5	SUV39H2	10	14938885	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	7515110	14938885	120595862	90	90											
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27702131	27702131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PTCHD3	NM_001034842	exon1	c.T1049C	p.F350S	TTGGTAAATTGAT	.	129	37	109	0	.	94	G	27702131	A	G	27702131	3	3	1	1	0	0	0	0	1	0	0	0	12734	14	1	2	1270	2	PTCHD3	10	27702131	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	12763246	27702131	107832616	91	91											
AGAP7	653268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	51464927	51464927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_001077685	exon7	c.C1529T	p.S510L	ATAGATGACATAA	.	251	40	220	1	.	.	A	51464927	G	A	51464927	3	1	1	1	0	0	0	0	1	0	0	0	373	1294	45	3	466	3	AGAP7	10	51464927	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	23762796	51464927	84069820	92	92											
CCDC6	8030	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61592392	61592392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CCDC6	NM_005436	exon3	c.A473T	p.E158V	TCTAGTTCGGCTT	.	308	77	266	2	.	686	A	61592392	T	A	61592392	3	1	1	1	0	0	0	0	1	0	0	0	2830	1783	62	4	979	4	CCDC6	10	61592392	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	10127465	61592392	73942355	93	93											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64967201	64967202	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.S1410G	CCCAGCTGGAAAC	.	84	21	87	0	.	.	CT	64967202	TG	CT	64967201	3	2	1	1	0	0	0	0	1	0	0	0	7950	1580	55	2	3462	2	JMJD1C	10	64967201	Missense_Mutation	DNP	TG	TCGA-BC-4073-01B-02D-A12Z-10	3374809	64967201	70567546	94	94											
WAPAL	23063	broad.mit.edu;bcgsc.ca	37	10	88259809	88259809	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	WAPAL	NM_015045	exon3	c.T1191C	p.R397R	TCTGAGACGACCA	.	79	6	96	1	.	91	G	88259809	A	G	88259809	2	3	1	1	0	0	0	0	0	0	0	1	17245	262	10	2		2	WAPAL	10	88259809	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	23292608	88259809	47274938	95	95											
RPP30	10556	ucsc.edu;bcgsc.ca	37	10	92660343	92660343	+	Silent	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RPP30	NM_006413	exon11	c.T714C	p.A238A	AACTGCTTTTGGA	.	42	4	77	0	.	226	C	92660343	T	C	92660343	2	2	1	1	0	0	0	0	0	0	0	1	13612	1596	56	2		2	RPP30	10	92660343	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	4400534	92660343	42874404	96	96											
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97917556	97917556	+	RNA	SNP	G	G	A	rs41291602	alternate_allele	TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZNF518A	.	.	.	.	ACTAATGGATTTT	.	78	27	95	0	G|0.999;C|0.001	23	A	97917556	G	A	97917556	1	1	1	0	1	0	0	0	0	0	0	0	17959	1349	47	3		3	ZNF518A	10	97917556	RNA	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	5257213	97917556	37617191	97	97											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1078363	1078364	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.S217Y	CCGCATCCTGCTC	.	83	29	52	0	.	.	AT	1078364	CC	AT	1078363	3	1	1	1	0	0	0	0	1	0	0	0	9975	855	30	3	668	3	MUC2	11	1078363	Missense_Mutation	DNP	CC	TCGA-BC-4073-01B-02D-A12Z-10		1078363	133928153	98	98											
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4944842	4944842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	OR51G1	NM_001005237	exon1	c.G728T	p.C243F	GAGACACAGGTGT	.	119	22	118	0	.	70	A	4944842	C	A	4944842	3	1	1	1	0	0	0	0	1	0	0	0	11098	478	17	3	239	3	OR51G1	11	4944842	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	3866479	4944842	130061674	99	99											
ABCC8	6833	broad.mit.edu;mdanderson.org	37	11	17430046	17430046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ABCC8	NM_000352	exon23	c.G2713T	p.G905C	TGGTGCCATCCTT	.	47	6	28	1	.	91	A	17430046	C	A	17430046	3	1	1	1	0	0	0	0	1	0	0	0	58	594	21	3	2100	3	ABCC8	11	17430046	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	12485204	17430046	117576470	100	100											
ZNF408	79797	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46726585	46726585	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZNF408	NM_024741	exon5	c.C1335T	p.A445A	CAAGGCCTTTGCC	.	25	7	22	1	.	90	T	46726585	C	T	46726585	2	4	1	1	0	0	0	0	0	0	0	1	17885	668	24	3		3	ZNF408	11	46726585	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	29296539	46726585	88279931	101	101											
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57970715	57970715	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	OR1S2	NM_001004459	exon1	c.C939T	p.A313A	TCTCAGGGCACCT	.	101	27	115	0	.	69	A	57970715	G	A	57970715	2	1	1	1	0	0	0	0	0	0	0	1	10973	1219	43	3		3	OR1S2	11	57970715	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	11244130	57970715	77035801	102	102											
GLYAT	10249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58477428	58477428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GLYAT	NM_201648	exon6	c.G702C	p.L234F	TTCCGGCAAGGTG	.	101	20	79	0	.	90	G	58477428	C	G	58477428	3	3	1	1	0	0	0	0	1	0	0	0	6479	709	25	4	192	4	GLYAT	11	58477428	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	506713	58477428	76529088	103	103											
TRPT1	83707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63992051	63992051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TRPT1	NM_001160389	exon5	c.G472T	p.A158S	CTGGGGCCAGGTG	.	69	12	39	0	.	90	A	63992051	C	A	63992051	3	1	1	1	0	0	0	0	1	0	0	0	16591	739	26	3	314	3	TRPT1	11	63992051	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	5514623	63992051	71014465	104	104											
PPP2R5B	5526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64695804	64695804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PPP2R5B	NM_006244	exon6	c.G629A	p.R210H	GGGAGCGTGAGTA	.	89	19	75	0	.	660	A	64695804	G	A	64695804	3	1	1	1	0	0	0	0	1	0	0	0	12393	1145	40	1	647	1	PPP2R5B	11	64695804	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	703753	64695804	70310712	105	105											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	71948271	71948271	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	INPPL1	NM_001567	exon26	c.C2983T	p.Q995X	CCGCACCAGCTGC	.	35	10	30	0	.	660	T	71948271	C	T	71948271	4	4	1	1	0	0	0	0	0	1	0	0	7761	595	21	3	3085	3	INPPL1	11	71948271	Nonsense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	7252467	71948271	63058245	106	106											
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120831700	120831700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GRIK4	NM_014619	exon15	c.A1957T	p.I653F	GTGCCCATTGAGT	.	76	22	81	0	.	92	T	120831700	A	T	120831700	3	4	1	1	0	0	0	0	1	0	0	0	6776	217	8	4	2015	4	GRIK4	11	120831700	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	48883429	120831700	14174816	107	107											
ROBO3	64221	ucsc.edu;bcgsc.ca	37	11	124749788	124749788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ROBO3	NM_022370	exon26	c.A3902G	p.E1301G	GTGGGGAGAGGAA	.	33	4	42	1	.	113	G	124749788	A	G	124749788	3	3	1	1	0	0	0	0	1	0	0	0	13515	304	11	2	4004	2	ROBO3	11	124749788	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	3918088	124749788	10256728	108	108											
GUCY2C	2984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14774139	14774139	+	Silent	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GUCY2C	NM_004963	exon23	c.C2613A	p.I871I	ATCACCGATGGTT	.	153	46	127	1	.	338	T	14774139	G	T	14774139	2	4	1	1	0	0	0	0	0	0	0	1	6896	1048	37	1		1	GUCY2C	12	14774139	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		14774139	119077756	109	109											
ACVR1B	91	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52374781	52374781	+	Silent	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ACVR1B	NM_020328	exon4	c.G609T	p.V203V	CACAGTGGCCCGA	.	125	36	100	1	.	1015	T	52374781	G	T	52374781	2	4	1	1	0	0	0	0	0	0	0	1	221	1335	47	3		3	ACVR1B	12	52374781	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	37600642	52374781	81477114	110	110	1	2									
ACVR1B	91	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52374782	52374782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ACVR1B	NM_020328	exon4	c.G610T	p.A204S	ACAGTGGCCCGAA	.	122	34	100	0	.	1015	T	52374782	G	T	52374782	3	4	1	1	0	0	0	0	1	0	0	0	221	1203	42	3	624	3	ACVR1B	12	52374782	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	1	52374782	81477113	111	111	1	2									
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52979897	52979897	+	Missense_Mutation	SNP	C	C	A	rs34119325	byfrequency;alternate_allele	TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KRT72	NM_001146225	exon9	c.G1405T	p.A469S	TTGAGGCGCCAAA	.	71	10	48	0	C|0.996;T|0.004	96	A	52979897	C	A	52979897	3	1	1	1	0	0	0	0	1	0	0	0	8485	768	27	1	134	1	KRT72	12	52979897	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	605115	52979897	80871998	112	112											
LRRIQ1	84125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450424	85450424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LRRIQ1	NM_001079910	exon8	c.C1853T	p.S618L	TAACATCAGAAAA	.	169	32	218	1	.	95	T	85450424	C	T	85450424	3	4	1	1	0	0	0	0	1	0	0	0	9029	838	29	3	1879	3	LRRIQ1	12	85450424	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	32470527	85450424	48401471	113	113											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105509006	105509006	+	Silent	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KIAA1033	NM_015275	exon5	c.A366T	p.G122G	AGAAGGAGGTAAG	.	404	80	562	1	.	91	T	105509006	A	T	105509006	2	4	1	1	0	0	0	0	0	0	0	1	8206	318	11	4		4	KIAA1033	12	105509006	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	20058582	105509006	28342889	114	114											
CRY1	1407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	107386611	107386611	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CRY1	NM_004075	exon12	c.A1715C	p.D572A	TGTGTGTCCTCTT	.	102	38	132	1	.	93	G	107386611	T	G	107386611	3	3	1	1	0	0	0	0	1	0	0	0	3903	1667	58	5	49	5	CRY1	12	107386611	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	1877605	107386611	26465284	115	115											
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110959986	110959986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RAD9B	NM_152442	exon10	c.G895A	p.D299N	AGGTCAGATCTGA	.	141	33	126	0	.	228	A	110959986	G	A	110959986	3	1	1	1	0	0	0	0	1	0	0	0	12996	942	33	3	933	3	RAD9B	12	110959986	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	3573375	110959986	22891909	116	116											
RILPL1	353116	ucsc.edu;bcgsc.ca	37	12	123970231	123970231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_178314	exon5	c.A923G	p.E308G	TTGAGCTCGTTCC	.	36	4	43	0	.	.	C	123970231	T	C	123970231	3	2	1	1	0	0	0	0	1	0	0	0	13361	1551	54	2	300	2	RILPL1	12	123970231	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	13010245	123970231	9881664	117	117											
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	66878891	66878891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDH9	NM_203487	exon5	c.C3610T	p.H1204Y	TGAAATGGCCTTC	.	365	82	345	0	.	96	A	66878891	G	A	66878891	3	1	1	1	0	0	0	0	1	0	0	0	11518	1348	47	3	107	3	PCDH9	13	66878891	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		66878891	48290987	118	118											
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	67800949	67800949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDH9	NM_203487	exon2	c.G1624A	p.V542I	CAGTTACTGTAAA	.	141	39	164	0	.	96	T	67800949	C	T	67800949	3	4	1	1	0	0	0	0	1	0	0	0	11518	565	20	3	2105	3	PCDH9	13	67800949	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	922058	67800949	47368929	119	119											
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103701772	103701772	+	Silent	SNP	C	C	T	rs201412654		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC10A2	NM_000452	exon5	c.G786A	p.T262T	CATCCCCGTTTCA	.	106	28	90	0	.	94	T	103701772	C	T	103701772	2	4	1	1	0	0	0	0	0	0	0	1	14374	639	23	1		1	SLC10A2	13	103701772	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	35900823	103701772	11468106	120	120											
COL4A1	1282	ucsc.edu;bcgsc.ca	37	13	110828996	110828996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	COL4A1	NM_001845	exon35	c.A2945G	p.Q982R	CCTGCCTGCCCGT	.	39	4	55	0	.	654	C	110828996	T	C	110828996	3	2	1	1	0	0	0	0	1	0	0	0	3689	1580	55	2	2136	2	COL4A1	13	110828996	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	7127224	110828996	4340882	121	121											
SLC22A17	51310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23816360	23816360	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC22A17	NM_020372	exon8	c.C1278T	p.A426A	GATGGCGGCAGCT	.	71	24	70	0	.	226	A	23816360	G	A	23816360	2	1	1	1	0	0	0	0	0	0	0	1	14448	1103	39	1		1	SLC22A17	14	23816360	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		23816360	83533180	122	122											
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33293092	33293092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AKAP6	NM_004274	exon13	c.A6073G	p.N2025D	GAACAAAACGGAA	.	36	7	32	0	.	733	G	33293092	A	G	33293092	3	3	1	1	0	0	0	0	1	0	0	0	455	14	1	2	6119	2	AKAP6	14	33293092	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	9476732	33293092	74056448	123	123											
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	59965466	59965466	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	JKAMP	NM_016475	exon5	c.T480G	p.Y160X	TATCTATTACGCA	.	108	29	140	0	.	67	G	59965466	T	G	59965466	4	3	1	1	0	0	0	0	0	1	0	0	7949	1500	52	5	498	5	JKAMP	14	59965466	Nonsense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	26672374	59965466	47384074	124	124											
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359250	33359250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FMN1	NM_001103184	exon1	c.G836T	p.G279V	CGAAGCCCACTGA	.	125	25	109	0	.	23	A	33359250	C	A	33359250	3	1	1	1	0	0	0	0	1	0	0	0	5949	623	22	3	2822	3	FMN1	15	33359250	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10		33359250	69172142	125	125											
CEP152	22995	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49048388	49048388	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CEP152	NM_014985	exon20	c.T3057C	p.C1019C	GTCTAGACAAGTT	.	201	54	174	1	.	70	G	49048388	A	G	49048388	2	3	1	1	0	0	0	0	0	0	0	1	3248	273	10	2		2	CEP152	15	49048388	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	15689138	49048388	53483004	126	126											
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91017734	91017734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IQGAP1	NM_003870	exon23	c.C2593T	p.P865S	GATCCTCCTATGG	.	101	28	92	0	.	950	T	91017734	C	T	91017734	3	4	1	1	0	0	0	0	1	0	0	0	7814	855	30	3	2683	3	IQGAP1	15	91017734	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	41969346	91017734	11513658	127	127											
VWA3A	146177	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	22149760	22149760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	VWA3A	NM_173615	exon22	c.A2219G	p.K740R	AACCAAAGACACT	.	32	15	17	1	.	1	G	22149760	A	G	22149760	3	3	1	1	0	0	0	0	1	0	0	0	17237	72	3	2	2305	2	VWA3A	16	22149760	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10		22149760	68204993	128	128											
CDH11	1009	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	65038672	65038672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CDH11	NM_001797	exon3	c.C101T	p.S34F	TGGAAGGAGGGCC	.	54	12	37	1	.	852	A	65038672	G	A	65038672	3	1	1	1	0	0	0	0	1	0	0	0	3097	1174	41	3	2333	3	CDH11	16	65038672	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	42888912	65038672	25316081	129	129											
TAT	6898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71606499	71606499	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TAT	NM_000353	exon5	c.T501C	p.P167P	GAAACCAGGTCTT	.	109	24	122	0	.	92	G	71606499	A	G	71606499	2	3	1	1	0	0	0	0	0	0	0	1	15587	175	7	2		2	TAT	16	71606499	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	6567827	71606499	18748254	130	130											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	17719659	17719659	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SREBF1	NM_001005291	exon12	c.C2166T	p.A722A	GTTGGTGGCAGTG	.	20	11	15	0	.	91	A	17719659	G	A	17719659	2	1	1	1	0	0	0	0	0	0	0	1	15140	1335	47	3		3	SREBF1	17	17719659	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		17719659	63475551	131	131											
ALDH3A1	218	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	19645392	19645392	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ALDH3A1	NM_001135168	exon4	c.C614G	p.T205S	ACAGGGGTCAGGT	.	124	29	90	1	.	228	C	19645392	G	C	19645392	3	2	1	1	0	0	0	0	1	0	0	0	497	1261	44	4	775	4	ALDH3A1	17	19645392	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	1925733	19645392	61549818	132	132											
LGALS9B	284194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	20354888	20354888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LGALS9B	NM_001042685	exon10	c.C827G	p.A276G	ACCACAGCATTCT	.	297	83	234	0	.	23	C	20354888	G	C	20354888	3	2	1	1	0	0	0	0	1	0	0	0	8749	971	34	4	248	4	LGALS9B	17	20354888	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	709496	20354888	60840322	133	133											
PROCA1	147011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	27038628	27038628	+	Silent	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PROCA1	NM_152465	exon1	c.C51A	p.T17T	GGGCTCGGTCTTT	.	82	18	64	0	.	91	T	27038628	G	T	27038628	2	4	1	1	0	0	0	0	0	0	0	1	12546	1103	39	1		1	PROCA1	17	27038628	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	6683740	27038628	54156582	134	134											
MED24	9862	ucsc.edu;bcgsc.ca	37	17	38185195	38185195	+	Silent	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MED24	NM_014815	exon14	c.A1293G	p.S431S	CTCCGGTGACTTA	.	43	5	53	1	.	187	C	38185195	T	C	38185195	2	2	1	1	0	0	0	0	0	0	0	1	9442	1683	59	2		2	MED24	17	38185195	Silent	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	11146567	38185195	43010015	135	135											
AKAP1	8165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	55187484	55187484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AKAP1	NM_001242902	exon4	c.G1813T	p.V605F	AAGAAGGTCGACC	.	60	17	59	0	.	227	T	55187484	G	T	55187484	3	4	1	1	0	0	0	0	1	0	0	0	445	1261	44	3	1819	3	AKAP1	17	55187484	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	17002289	55187484	26007726	136	136											
TUBD1	51174	broad.mit.edu;bcgsc.ca	37	17	57937714	57937714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TUBD1	NM_016261	exon9	c.A1331G	p.E444G	ACCTGCTCTAATG	.	198	9	174	2	.	227	C	57937714	T	C	57937714	3	2	1	1	0	0	0	0	1	0	0	0	16759	1551	54	2	34	2	TUBD1	17	57937714	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	2750230	57937714	23257496	137	137											
CACNG4	27092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65026740	65026740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CACNG4	NM_014405	exon4	c.G604T	p.A202S	GTCCTGGCTGTAA	.	77	28	73	0	.	90	T	65026740	G	T	65026740	3	4	1	1	0	0	0	0	1	0	0	0	2559	1203	42	3	618	3	CACNG4	17	65026740	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	7089026	65026740	16168470	138	138											
FBF1	85302	broad.mit.edu;bcgsc.ca	37	17	73919636	73919636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FBF1	NM_001080542	exon13	c.C1010G	p.P337R	TTCCTGGGCTGGA	.	103	22	106	0	.	205	C	73919636	G	C	73919636	3	2	1	1	0	0	0	0	1	0	0	0	5695	1232	43	4	2459	4	FBF1	17	73919636	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	8892896	73919636	7275574	139	139											
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14850260	14850260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ANKRD30B	NM_001145029	exon35	c.T3086C	p.L1029S	ATATATTAAAAGA	.	348	80	406	0	.	24	C	14850260	T	C	14850260	3	2	1	1	0	0	0	0	1	0	0	0	659	1764	61	2	3224	2	ANKRD30B	18	14850260	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10		14850260	63226988	140	140											
MBD1	4152	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	47800056	47800056	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MBD1	NM_001204137	exon13	c.G1399T	p.E467X	CTGCTTCCTGCTT	.	95	26	83	1	.	228	A	47800056	C	A	47800056	4	1	1	1	0	0	0	0	0	1	0	0	9342	864	30	3	707	3	MBD1	18	47800056	Nonsense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	32949796	47800056	30277192	141	141											
POLRMT	5442	ucsc.edu;bcgsc.ca	37	19	621784	621784	+	Silent	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	POLRMT	NM_005035	exon10	c.G1914T	p.T638T	GGTCAGCGTGGGC	.	31	9	28	0	.	92	A	621784	C	A	621784	2	1	1	1	0	0	0	0	0	0	0	1	12238	755	27	1		1	POLRMT	19	621784	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10		621784	58507199	142	142											
SAFB	6294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5653399	5653399	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SAFB	NM_002967	exon11	c.C1494T	p.D498D	CAGTGACGGGAAA	.	189	53	142	0	.	228	T	5653399	C	T	5653399	2	4	1	1	0	0	0	0	0	0	0	1	13806	535	19	1		1	SAFB	19	5653399	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	5031615	5653399	53475584	143	143											
TNFSF14	8740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6670048	6670048	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TNFSF14	NM_003807	exon2	c.T33C	p.F11F	CACCACAAACACT	.	86	25	93	0	.	228	G	6670048	A	G	6670048	2	3	1	1	0	0	0	0	0	0	0	1	16304	127	5	2		2	TNFSF14	19	6670048	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	1016649	6670048	52458935	144	144											
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8038704	8038704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ELAVL1	NM_001419	exon4	c.G335T	p.G112V	GGGAGCCCGCTGA	.	125	38	120	0	.	90	A	8038704	C	A	8038704	3	1	1	1	0	0	0	0	1	0	0	0	5049	623	22	3	657	3	ELAVL1	19	8038704	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	1368656	8038704	51090279	145	145											
MAN2B1	4125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12776599	12776599	+	Silent	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MAN2B1	NM_001173498	exon2	c.G180C	p.P60P	CATGTTCGGCTGC	.	100	33	67	1	.	94	G	12776599	C	G	12776599	2	3	1	1	0	0	0	0	0	0	0	1	9216	871	31	4		4	MAN2B1	19	12776599	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	4737895	12776599	46352384	146	146											
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52327451	52327451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FPR3	NM_002030	exon2	c.G450C	p.W150C	ACTCTGGATTTTC	.	162	11	141	0	.	501	C	52327451	G	C	52327451	3	2	1	1	0	0	0	0	1	0	0	0	6040	1183	41	4	452	4	FPR3	19	52327451	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	39550852	52327451	6801532	147	147											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53304147	53304147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZNF28	NM_006969	exon4	c.T951A	p.H317Q	TATCTTATGTGTT	.	116	27	112	0	.	91	T	53304147	A	T	53304147	3	4	1	1	0	0	0	0	1	0	0	0	17810	446	16	4	1209	4	ZNF28	19	53304147	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	976696	53304147	5824836	148	148											
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20571891	20571891	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RALGAPA2	NM_020343	exon17	c.G2271A	p.Q757Q	CTGCTGCTGTCCC	.	74	19	74	1	.	24	T	20571891	C	T	20571891	2	4	1	1	0	0	0	0	0	0	0	1	13014	796	28	3		3	RALGAPA2	20	20571891	Silent	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10		20571891	42453629	149	149											
FOXS1	2307	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	30432921	30432921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FOXS1	NM_004118	exon1	c.G425C	p.G142A	GGGACTCCTGGGT	.	33	12	19	0	.	69	G	30432921	C	G	30432921	3	3	1	1	0	0	0	0	1	0	0	0	6035	855	30	4	571	4	FOXS1	20	30432921	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	9861030	30432921	32592599	150	150											
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31023639	31023639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ASXL1	NM_015338	exon12	c.C3124T	p.P1042S	TCTGCCCCACTGT	.	77	6	64	0	.	2057	T	31023639	C	T	31023639	3	4	1	1	0	0	0	0	1	0	0	0	1066	623	22	3	3180	3	ASXL1	20	31023639	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	590718	31023639	32001881	151	151											
PXMP4	11264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	32298387	32298387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PXMP4	NM_007238	exon3	c.G349T	p.G117X	TTTCTCCAAACAC	.	163	40	161	0	.	90	A	32298387	C	A	32298387	4	1	1	1	0	0	0	0	0	1	0	0	12851	603	21	3	297	3	PXMP4	20	32298387	Nonsense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	1274748	32298387	30727133	152	152											
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50092056	50092056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NFATC2	NM_012340	exon4	c.A1474C	p.I492L	CCACTATCTTCTC	.	329	83	308	0	.	92	G	50092056	T	G	50092056	3	3	1	1	0	0	0	0	1	0	0	0	10362	1435	50	5	1379	5	NFATC2	20	50092056	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	17793669	50092056	12933464	153	153											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35172168	35172168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ITSN1	NM_001001132	exon19	c.G2239A	p.A747T	TACCGGGCACTGT	.	31	8	44	0	.	94	A	35172168	G	A	35172168	3	1	1	1	0	0	0	0	1	0	0	0	7926	1203	42	3	2309	3	ITSN1	21	35172168	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		35172168	12957727	154	154											
SF3A1	10291	ucsc.edu;bcgsc.ca	37	22	30742471	30742471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SF3A1	NM_001005409	exon3	c.G223A	p.E75K	TGATCTCGTTCTG	.	251	64	209	2	.	157	T	30742471	C	T	30742471	3	4	1	1	0	0	0	0	1	0	0	0	14146	893	31	1	2214	1	SF3A1	22	30742471	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10		30742471	20562095	155	155											
TMEM184B	25829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38643832	38643832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TMEM184B	NM_001195071	exon2	c.G136T	p.A46S	CCTGAGCGGCAGT	.	43	10	32	1	.	68	A	38643832	C	A	38643832	3	1	1	1	0	0	0	0	1	0	0	0	16102	768	27	1	1119	1	TMEM184B	22	38643832	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	7901361	38643832	12660734	156	156											
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38823337	38823337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KCNJ4	NM_004981	exon2	c.G801T	p.E267D	GCTGTCCTCGTCG	.	62	24	39	0	.	90	A	38823337	C	A	38823337	3	1	1	1	0	0	0	0	1	0	0	0	8053	680	24	3	540	3	KCNJ4	22	38823337	Missense_Mutation	SNP	C	TCGA-BC-4073-01B-02D-A12Z-10	179505	38823337	12481229	157	157											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46829366	46829366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CELSR1	NM_014246	exon5	c.C4535T	p.T1512M	ACGGTCGTTGTTG	.	33	9	33	0	.	525	A	46829366	G	A	46829366	3	1	1	1	0	0	0	0	1	0	0	0	3221	1145	40	1	4633	1	CELSR1	22	46829366	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	8006029	46829366	4475200	158	158											
SELO	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50655246	50655246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	.	GCTGAGTGCGGCA	.	43	17	26	2	.	.	G	50655246	T	G	50655246	3	3	1	1	0	0	0	0	1	0	0	0	14018	1693	59	5	1655	5	SELO	22	50655246	Missense_Mutation	SNP	T	TCGA-BC-4073-01B-02D-A12Z-10	3825880	50655246	649320	159	159											
HCCS	3052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	11139892	11139892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	HCCS	NM_001122608	exon7	c.G769C	p.D257H	GTATGGGACAGAA	.	32	15	33	0	.	226	C	11139892	G	C	11139892	3	2	1	1	0	0	0	0	1	0	0	0	6990	1174	41	4	791	4	HCCS	23	11139892	Missense_Mutation	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10		11139892	144130668	160	160											
PRPS2	5634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12838904	12838904	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PRPS2	NM_001039091	exon6	c.A855G	p.K285K	AATGAAACACTGC	.	42	23	35	0	.	130	G	12838904	A	G	12838904	2	3	1	1	0	0	0	0	0	0	0	1	12580	40	2	2		2	PRPS2	23	12838904	Silent	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	1699012	12838904	142431656	161	161											
CNKSR2	22866	ucsc.edu;bcgsc.ca	37	X	21624911	21624911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CNKSR2	NM_014927	exon19	c.A2059G	p.S687G	AGTGAGAGTGACA	.	48	5	33	0	.	625	G	21624911	A	G	21624911	3	3	1	1	0	0	0	0	1	0	0	0	3607	304	11	2	2133	2	CNKSR2	23	21624911	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	8786007	21624911	133645649	162	162											
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46541903	46541903	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC9A7	NM_001257291	exon2	c.C393T	p.S131S	AGTGCAGCTGAGT	.	49	26	51	0	.	132	A	46541903	G	A	46541903	2	1	1	1	0	0	0	0	0	0	0	1	14719	962	34	3		3	SLC9A7	23	46541903	Silent	SNP	G	TCGA-BC-4073-01B-02D-A12Z-10	24916992	46541903	108728657	163	163											
AKAP4	8852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49955717	49955717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AKAP4	NM_003886	exon6	c.T2451A	p.S817R	TCCTACACTGTAC	.	73	32	67	1	.	540	T	49955717	A	T	49955717	3	4	1	1	0	0	0	0	1	0	0	0	453	156	6	4	117	4	AKAP4	23	49955717	Missense_Mutation	SNP	A	TCGA-BC-4073-01B-02D-A12Z-10	3413814	49955717	105314843	164	164											
PRDM16	63976	ucsc.edu;bcgsc.ca	37	1	3328268	3328268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRDM16	NM_022114	exon9	c.G1507T	p.A503S	TCCACGGCGCCTC	.	32	4	49	0	.	660	T	3328268	G	T	3328268	3	4	2	1	0	0	0	0	1	0	0	0	12457	1203	42	3	1541	3	PRDM16	1	3328268	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10		3328268	245922353	1	165											
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44684030	44684030	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DMAP1	NM_001034023	exon5	c.C441T	p.L147L	TTATCTCCACGAT	.	143	38	306	0	.	226	T	44684030	C	T	44684030	2	4	2	1	0	0	0	0	0	0	0	1	4576	842	30	3		3	DMAP1	1	44684030	Silent	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	41355762	44684030	204566591	2	166											
SLC35A3	23443	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100483326	100483326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC35A3	NM_001271685	exon7	c.C968T	p.S323L	TATTATCAACATT	.	495	74	913	2	.	90	T	100483326	C	T	100483326	3	4	2	1	0	0	0	0	1	0	0	0	14572	838	29	3	864	3	SLC35A3	1	100483326	Missense_Mutation	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	55799296	100483326	148767295	3	167											
HIST2H3D	653604	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149784882	149784882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HIST2H3D	NM_001123375	exon1	c.A355G	p.T119A	TGATGGTCACGCG	.	208	61	276	1	.	22	C	149784882	T	C	149784882	3	2	2	1	0	0	0	0	1	0	0	0	7181	1667	58	2	57	2	HIST2H3D	1	149784882	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	49301556	149784882	99465739	4	168											
WDR26	80232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224585919	224585919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WDR26	NM_025160	exon12	c.T1654A	p.L552I	CCCATAAATGAAC	.	95	30	156	0	.	90	T	224585919	A	T	224585919	3	4	2	1	0	0	0	0	1	0	0	0	17280	11	1	4	343	4	WDR26	1	224585919	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	74801037	224585919	24664702	5	169											
GALNT2	2590	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230410235	230410235	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GALNT2	NM_004481	exon15	c.G1485A	p.L495L	GGATTTGTGCCTT	.	88	8	120	1	.	92	A	230410235	G	A	230410235	2	1	2	1	0	0	0	0	0	0	0	1	6213	1368	48	3		3	GALNT2	1	230410235	Silent	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	5824316	230410235	18840386	6	170											
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75104368	75104368	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HK2	NM_000189	exon8	c.G951A	p.E317E	GGAGGAGCTGCTC	.	105	25	133	0	.	252	A	75104368	G	A	75104368	2	1	2	1	0	0	0	0	0	0	0	1	7191	962	34	3		3	HK2	2	75104368	Silent	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10		75104368	168095005	7	171											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380447	109380447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RANBP2	NM_006267	exon20	c.A3452G	p.N1151S	CAGCAAACAAGAA	.	131	71	165	0	.	675	G	109380447	A	G	109380447	3	3	2	1	0	0	0	0	1	0	0	0	13028	43	2	2	3530	2	RANBP2	2	109380447	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	34276079	109380447	133818926	8	172											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179412302	179412302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon339	c.T94051C	p.S31351P	TACCCGATTCACG	.	166	31	246	0	.	636	G	179412302	A	G	179412302	3	3	2	1	0	0	0	0	1	0	0	0	16732	333	12	2	14024	2	TTN	2	179412302	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	70031855	179412302	63787071	9	173											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179532037	179532037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon162	c.C35723T	p.T11908I	CTGGTTGTATCAG	.	160	42	280	1	.	636	A	179532037	G	A	179532037	3	1	2	1	0	0	0	0	1	0	0	0	16732	1392	48	3		3	TTN	2	179532037	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	119735	179532037	63667336	10	174											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	189	89	298	0	.	23522	A	209113113	G	A	209113113	3	1	2	1	0	0	0	0	1	0	0	0	7494	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	29581076	209113113	34086260	11	175											
CXCR7	57007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	237489915	237489915	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CXCR7	NM_020311	exon2	c.C807T	p.H269H	CTACCACGTGGCG	.	111	23	141	0	.	1145	T	237489915	C	T	237489915	2	4	2	1	0	0	0	0	0	0	0	1	4096	535	19	1		1	CXCR7	2	237489915	Silent	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	28376802	237489915	5709458	12	176											
RAF1	5894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12645687	12645687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RAF1	NM_002880	exon7	c.C782G	p.P261R	ACATTAGGTGTGG	.	126	57	173	0	.	1404	C	12645687	G	C	12645687	3	2	2	1	0	0	0	0	1	0	0	0	13002	1000	35	4	1208	4	RAF1	3	12645687	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10		12645687	185376743	13	177											
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52440340	52440348	+	In_Frame_Del	DEL	TGCGGTCGG	TGCGGTCGG	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	TGCGGTCGG	TGCGGTCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BAP1	NM_004656	exon9	c.704_712del	p.235_238del	TGATCCTGCGGTC	.	37	16	112	0	.	1032	-	52440348	TGCGGTCGG	-	52440340	7	5	2	1	0	1	0	1	0	0	0	0	1311	1579	55	0	1513	0	BAP1	3	52440340	In_Frame_Del	DEL	TGCGGTCGG	TCGA-BC-A10Q-01A-11D-A12Z-10	39794653	52440340	145582090	14	178											
DTX3L	151636	ucsc.edu;bcgsc.ca	37	3	122288722	122288722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DTX3L	NM_138287	exon3	c.T1786C	p.C596R	CCAATCTGTCCCA	.	43	4	93	0	.	587	C	122288722	T	C	122288722	3	2	2	1	0	0	0	0	1	0	0	0	4796	1580	55	2	1796	2	DTX3L	3	122288722	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	69848382	122288722	75733708	15	179											
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184001717	184001717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ECE2	NM_014693	exon8	c.G1315A	p.D439N	CGGCGCGACGAGG	.	164	30	168	0	.	94	A	184001717	G	A	184001717	3	1	2	1	0	0	0	0	1	0	0	0	4890	1058	37	1	1909	1	ECE2	3	184001717	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	61712995	184001717	14020713	16	180											
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3494941	3494941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DOK7	NM_173660	exon7	c.A1228G	p.S410G	CCACGCAGCCTTT	.	45	4	32	0	.	91	G	3494941	A	G	3494941	3	3	2	1	0	0	0	0	1	0	0	0	4702	188	7	2	1254	2	DOK7	4	3494941	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10		3494941	187659335	17	181											
GSTCD	79807	broad.mit.edu;bcgsc.ca	37	4	106766665	106766665	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GSTCD	NM_001031720	exon12	c.T1833C	p.V611V	CTCCGTTCAAGTG	.	88	5	158	0	.	92	C	106766665	T	C	106766665	2	2	2	1	0	0	0	0	0	0	0	1	6835	1770	62	2		2	GSTCD	4	106766665	Silent	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	103271724	106766665	84387611	18	182											
TNPO1	3842	hgsc.bcm.edu;bcgsc.ca	37	5	72144303	72144303	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TNPO1	NM_002270	exon2	c.107delC	p.T36fs	ACACCACCATCCA	.	68	30	46	0	.	228	-	72144303	C	-	72144303	7	5	2	1	0	1	0	1	0	0	0	0	16332	507	18	0	113	0	TNPO1	5	72144303	Frame_Shift_Del	DEL	C	TCGA-BC-A10Q-01A-11D-A12Z-10		72144303	108770957	19	183											
RAB24	53917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176728924	176728924	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RAB24	NM_001031677	exon8	c.547+2T>C	.	GCACACACCTGTC	.	79	10	110	0	.	159	G	176728924	A	G	176728924	5	3	2	1	0	0	0	0	0	0	1	0	12911	173	6	2	70	2	RAB24	5	176728924	Splice_Site	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	104584621	176728924	4186336	20	184											
FRK	2444	ucsc.edu;bcgsc.ca	37	6	116381396	116381396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FRK	NM_002031	exon1	c.A79G	p.T27A	TCACGGTTGACTT	.	36	4	71	0	.	948	C	116381396	T	C	116381396	3	2	2	1	0	0	0	0	1	0	0	0	6048	1725	60	2	1470	2	FRK	6	116381396	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10		116381396	54733671	21	185											
IGF2R	3482	ucsc.edu;bcgsc.ca	37	6	160461609	160461609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IGF2R	NM_000876	exon11	c.A1333G	p.T445A	AAAGGAACTCCTG	.	37	4	109	0	.	118	G	160461609	A	G	160461609	3	3	2	1	0	0	0	0	1	0	0	0	7576	43	2	2	1375	2	IGF2R	6	160461609	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	44080213	160461609	10653458	22	186											
AEBP1	165	ucsc.edu;bcgsc.ca	37	7	44147093	44147093	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	AEBP1	NM_001129	exon3	c.A651G	p.A217A	GGAGGCACGGGAG	.	59	5	66	0	.	90	G	44147093	A	G	44147093	2	3	2	1	0	0	0	0	0	0	0	1	349	146	6	2		2	AEBP1	7	44147093	Silent	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10		44147093	114991570	23	187											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48315045	48315045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ABCA13	NM_152701	exon17	c.G5782T	p.V1928F	CCGTTTGTCCCAC	.	222	106	280	0	.	521	T	48315045	G	T	48315045	3	4	2	1	0	0	0	0	1	0	0	0	31	1377	48	3	5677	3	ABCA13	7	48315045	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	4167952	48315045	110823618	24	188											
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65705902	65705902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TPST1	NM_003596	exon2	c.C490G	p.L164V	TTTGCCCTGAAAT	.	82	32	126	0	.	90	G	65705902	C	G	65705902	3	3	2	1	0	0	0	0	1	0	0	0	16424	680	24	4	492	4	TPST1	7	65705902	Missense_Mutation	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	17390857	65705902	93432761	25	189											
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87912274	87912274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	STEAP4	NM_001205315	exon4	c.C666G	p.D222E	GATTACGTCTCTT	.	103	43	189	0	.	90	C	87912274	G	C	87912274	3	2	2	1	0	0	0	0	1	0	0	0	15279	1136	40	4	725	4	STEAP4	7	87912274	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	22206372	87912274	71226389	26	190											
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100392945	100392945	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZAN	.	.	.	.	GCCACCTCCCAGA	.	40	6	52	1	.	142	C	100392945	T	C	100392945	2	2	2	1	0	0	0	0	0	0	0	1	17510	1538	54	2		2	ZAN	7	100392945	Silent	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	12480671	100392945	58745718	27	191											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	460026	460026	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DIP2C	NM_014974	exon8	c.884delC	p.P295fs	GGCTTTGGTTGGT	.	69	24	58	0	.	156	-	460026	G	-	460026	7	5	2	1	0	1	0	1	0	0	0	0	4529	1348	47	0	3906	0	DIP2C	10	460026	Frame_Shift_Del	DEL	G	TCGA-BC-A10Q-01A-11D-A12Z-10		460026	135074721	28	192											
SGMS1	259230	ucsc.edu;bcgsc.ca	37	10	52103374	52103374	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SGMS1	NM_147156	exon7	c.T501C	p.P167P	TAGTGGAGGCTGC	.	48	4	118	0	.	227	G	52103374	A	G	52103374	2	3	2	1	0	0	0	0	0	0	0	1	14214	291	11	2		2	SGMS1	10	52103374	Silent	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	51643348	52103374	83431373	29	193											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63817024	63817024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARID5B	NM_032199	exon6	c.T995C	p.M332T	AATACATGAAAGA	.	72	52	166	0	.	94	C	63817024	T	C	63817024	3	2	2	1	0	0	0	0	1	0	0	0	922	1464	51	2	1017	2	ARID5B	10	63817024	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	11713650	63817024	71717723	30	194											
HTR7	3363	ucsc.edu;bcgsc.ca	37	10	92508599	92508599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HTR7	NM_019860	exon2	c.T1292C	p.V431A	TACAGCACAAACT	.	42	4	95	0	.	91	G	92508599	A	G	92508599	3	3	2	1	0	0	0	0	1	0	0	0	7452	159	6	2	163	2	HTR7	10	92508599	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	28691575	92508599	43026148	31	195											
API5	8539	ucsc.edu;bcgsc.ca	37	11	43364048	43364048	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	API5	NM_001142930	exon14	c.A1563G	p.G521G	TCGGGGAAGACTC	.	36	5	59	1	.	136	G	43364048	A	G	43364048	2	3	2	1	0	0	0	0	0	0	0	1	773	233	9	2		2	API5	11	43364048	Silent	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10		43364048	91642468	32	196											
USP28	57646	broad.mit.edu;bcgsc.ca	37	11	113699932	113699932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	USP28	NM_020886	exon10	c.A1046G	p.K349R	CCATACTTCACCG	.	70	6	164	0	.	706	C	113699932	T	C	113699932	3	2	2	1	0	0	0	0	1	0	0	0	17055	1609	56	2	2251	2	USP28	11	113699932	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	70335884	113699932	21306584	33	197											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118373507	118373507	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MLL	NM_001197104	exon27	c.G6900A	p.V2300V	CTTGGTGTCCAAG	.	51	13	103	0	.	1255	A	118373507	G	A	118373507	2	1	2	1	0	0	0	0	0	0	0	1	9620	1364	48	3		3	MLL	11	118373507	Silent	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	4673575	118373507	16633009	34	198											
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130785772	130785772	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SNX19	NM_014758	exon1	c.T63C	p.N21N	CAGGTTATTGAGG	.	53	11	108	0	.	229	G	130785772	A	G	130785772	2	3	2	1	0	0	0	0	0	0	0	1	14890	446	16	2		2	SNX19	11	130785772	Silent	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	12412265	130785772	4220744	35	199											
ACTR6	64431	ucsc.edu;bcgsc.ca	37	12	100594696	100594696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ACTR6	NM_022496	exon1	c.T67C	p.S23P	AATGTGTCGTAAG	.	46	4	98	0	.	91	C	100594696	T	C	100594696	3	2	2	1	0	0	0	0	1	0	0	0	216	1681	58	2	69	2	ACTR6	12	100594696	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10		100594696	33257199	36	200											
RSRC2	65117	broad.mit.edu;bcgsc.ca	37	12	122991425	122991425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RSRC2	NM_023012	exon9	c.A1081G	p.N361D	CCTTGTTTCCAAA	.	120	7	230	0	.	91	C	122991425	T	C	122991425	3	2	2	1	0	0	0	0	1	0	0	0	13715	1841	64	2	231	2	RSRC2	12	122991425	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	22396729	122991425	10860470	37	201											
C14orf37	145407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58605153	58605153	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	C14orf37	NM_001001872	exon2	c.T924A	p.S308S	TAAGGCAGAGGCA	.	98	45	227	0	.	90	T	58605153	A	T	58605153	2	4	2	1	0	0	0	0	0	0	0	1	1771	175	7	4		4	C14orf37	14	58605153	Silent	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10		58605153	48744387	38	202											
GALK2	2585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49531474	49531474	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GALK2	NM_002044	exon5	c.C414T	p.I138I	AAATATCCCACCA	.	209	40	345	1	.	160	T	49531474	C	T	49531474	2	4	2	1	0	0	0	0	0	0	0	1	6204	845	30	3		3	GALK2	15	49531474	Silent	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10		49531474	52999918	39	203											
MAP2K1	5604	ucsc.edu;bcgsc.ca	37	15	66777396	66777396	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MAP2K1	NM_002755	exon7	c.A762C	p.V254V	TCTGGTAGAGATG	.	73	7	129	0	.	978	C	66777396	A	C	66777396	2	2	2	1	0	0	0	0	0	0	0	1	9236	407	15	5		5	MAP2K1	15	66777396	Silent	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	17245922	66777396	35753996	40	204											
PML	5371	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74290431	74290431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PML	NM_033250	exon2	c.T216G	p.C72W	GCCTTGTCTGCAC	.	85	16	82	1	.	1083	G	74290431	T	G	74290431	3	3	2	1	0	0	0	0	1	0	0	0	12135	1673	58	5	222	5	PML	15	74290431	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	7513035	74290431	28240961	41	205											
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3417232	3417232	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRPV3	NM_001258205	exon18	c.A2355G	p.E785E	CGGGAATTCCTCG	.	217	71	314	1	.	94	C	3417232	T	C	3417232	2	2	2	1	0	0	0	0	0	0	0	1	16594	1490	52	2		2	TRPV3	17	3417232	Silent	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10		3417232	77777978	42	206											
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4082167	4082167	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ANKFY1	NM_001257999	exon18	c.C2709T	p.S903S	AGCCCCGGACTCT	.	85	20	135	0	.	93	A	4082167	G	A	4082167	2	1	2	1	0	0	0	0	0	0	0	1	626	1103	39	1		1	ANKFY1	17	4082167	Silent	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	664935	4082167	77113043	43	207											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	10432777	10432777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYH2	NM_017534	exon25	c.G3139T	p.E1047X	TCTTTTCTTGCTC	.	136	15	246	0	.	194	A	10432777	C	A	10432777	4	1	2	1	0	0	0	0	0	1	0	0	10035	922	32	3	2750	3	MYH2	17	10432777	Nonsense_Mutation	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	6350610	10432777	70762433	44	208											
MPRIP	23164	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17075144	17075144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MPRIP	NM_015134	exon16	c.G2276A	p.R759H	AAGACCGCCTCCT	.	93	11	114	0	.	90	A	17075144	G	A	17075144	3	1	2	1	0	0	0	0	1	0	0	0	9743	1087	38	1	2338	1	MPRIP	17	17075144	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	6642367	17075144	64120066	45	209											
TPM4	7171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16186928	16186928	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TPM4	NM_001145160	exon2	c.G186C	p.E62D	TTCCGAGGACCTG	.	179	95	194	0	.	316	C	16186928	G	C	16186928	3	2	2	1	0	0	0	0	1	0	0	0	16405	991	35	4	192	4	TPM4	19	16186928	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10		16186928	42942055	46	210											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39010081	39010081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RYR1	NM_001042723	exon67	c.G10246A	p.V3416M	CGCTACGTGGACA	.	46	17	62	0	.	100	A	39010081	G	A	39010081	3	1	2	1	0	0	0	0	1	0	0	0	13768	1145	40	1	10512	1	RYR1	19	39010081	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	22823153	39010081	20118902	47	211											
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53014251	53014251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001099694	exon6	c.A617C	p.N206T	CTCCTAATAACTA	.	233	14	398	0	.	.	C	53014251	A	C	53014251	3	2	2	1	0	0	0	0	1	0	0	0	18007	101	4	5	627	5	ZNF578	19	53014251	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	14004170	53014251	6114732	48	212											
U2AF2	11338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56185355	56185355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	U2AF2	NM_007279	exon12	c.C1349T	p.T450M	GCCTGACGGGCCG	.	106	22	123	0	.	91	T	56185355	C	T	56185355	3	4	2	1	0	0	0	0	1	0	0	0	16820	536	19	1	1395	1	U2AF2	19	56185355	Missense_Mutation	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	3171104	56185355	2943628	49	213											
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45920579	45920579	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZMYND8	NM_183047	exon6	c.A621G	p.E207E	GATGTATTCCGCA	.	82	31	144	0	.	252	C	45920579	T	C	45920579	2	2	2	1	0	0	0	0	0	0	0	1	17708	1490	52	2		2	ZMYND8	20	45920579	Silent	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10		45920579	17104941	50	214											
PKNOX1	5316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44450022	44450022	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PKNOX1	NM_004571	exon11	c.G1122A	p.T374T	CACCACGCCCGTG	.	97	40	152	0	.	153	A	44450022	G	A	44450022	2	1	2	1	0	0	0	0	0	0	0	1	11982	1074	38	1		1	PKNOX1	21	44450022	Silent	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10		44450022	3679873	51	215											
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18919622	18919622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PHKA2	NM_000292	exon27	c.T3008A	p.L1003Q	CTCCTCAGTCTGT	.	209	101	315	0	.	131	T	18919622	A	T	18919622	3	4	2	1	0	0	0	0	1	0	0	0	11844	188	7	4	727	4	PHKA2	23	18919622	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10		18919622	136350938	52	216											
DMD	1756	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	32486707	32486707	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DMD	NM_004006	exon23	c.G3070T	p.E1024X	CAATTTCTTCAAA	.	577	89	794	2	.	265	A	32486707	C	A	32486707	4	1	2	1	0	0	0	0	0	1	0	0	4580	922	32	3	8458	3	DMD	23	32486707	Nonsense_Mutation	SNP	C	TCGA-BC-A10Q-01A-11D-A12Z-10	13567085	32486707	122783853	53	217											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50653812	50653812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BMP15	NM_005448	exon1	c.T29G	p.L10R	GAATTCTTTTTCT	.	236	47	269	0	.	132	G	50653812	T	G	50653812	3	3	2	1	0	0	0	0	1	0	0	0	1458	1609	56	5	31	5	BMP15	23	50653812	Missense_Mutation	SNP	T	TCGA-BC-A10Q-01A-11D-A12Z-10	18167105	50653812	104616748	54	218											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	83128315	83128316	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CYLC1	NM_021118	exon4	c.599_600del	p.200_200del	AAGATAAGAAAGA	.	256	79	435	0	.	112	-	83128316	AG	-	83128315	7	5	2	1	0	1	0	1	0	0	0	0	4141	72	3	0	613	0	CYLC1	23	83128315	Frame_Shift_Del	DEL	AG	TCGA-BC-A10Q-01A-11D-A12Z-10	32474503	83128315	72142245	55	219											
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135593729	135593729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HTATSF1	NM_001163280	exon10	c.A1825C	p.K609Q	TCTGAAAAAGTGT	.	127	40	244	0	.	132	C	135593729	A	C	135593729	3	2	2	1	0	0	0	0	1	0	0	0	7433	15	1	5	1859	5	HTATSF1	23	135593729	Missense_Mutation	SNP	A	TCGA-BC-A10Q-01A-11D-A12Z-10	52465414	135593729	19676831	56	220											
DUSP9	1852	hgsc.bcm.edu;broad.mit.edu	37	X	152914788	152914788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DUSP9	NM_001395	exon3	c.G475A	p.V159M	GTGCCCGTGGTGG	.	100	12	117	0	.	660	A	152914788	G	A	152914788	3	1	2	1	0	0	0	0	1	0	0	0	4832	1145	40	1	481	1	DUSP9	23	152914788	Missense_Mutation	SNP	G	TCGA-BC-A10Q-01A-11D-A12Z-10	17321059	152914788	2355772	57	221											
CASP9	842	broad.mit.edu;bcgsc.ca	37	1	15821775	15821775	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CASP9	NM_001229	exon7	c.T1041C	p.T347T	TGGGAAAGTAGAG	.	110	6	151	0	.	1083	G	15821775	A	G	15821775	2	3	3	1	0	0	0	0	0	0	0	1	2679	59	3	2		2	CASP9	1	15821775	Silent	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10		15821775	233428846	1	222											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62330235	62330235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INADL	NM_176877	exon20	c.A2765C	p.Q922P	AGTCTCAAGAGGC	.	35	19	83	0	.	94	C	62330235	A	C	62330235	3	2	3	1	0	0	0	0	1	0	0	0	7731	130	5	5	2839	5	INADL	1	62330235	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	46508460	62330235	186920386	2	223											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380695	114380695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PTPN22	NM_015967	exon13	c.C1327A	p.P443T	TTATTGGCACCTT	.	38	14	129	0	.	227	T	114380695	G	T	114380695	3	4	3	1	0	0	0	0	1	0	0	0	12787	1203	42	3	1155	3	PTPN22	1	114380695	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	52050460	114380695	134869926	3	224											
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	147380863	147380863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GJA8	NM_005267	exon2	c.C781T	p.Q261X	TCCATCCAGAAAG	.	66	31	74	0	.	138	T	147380863	C	T	147380863	4	4	3	1	0	0	0	0	0	1	0	0	6405	595	21	3	783	3	GJA8	1	147380863	Nonsense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	33000168	147380863	101869758	4	225											
CRTC2	200186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153924495	153924495	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CRTC2	NM_181715	exon10	c.A996G	p.P332P	CTCACCTGGTGCA	.	65	21	77	1	.	228	C	153924495	T	C	153924495	2	2	3	1	0	0	0	0	0	0	0	1	3900	1594	55	2		2	CRTC2	1	153924495	Silent	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	6543632	153924495	95326126	5	226											
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155723018	155723018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GON4L	NM_001037533	exon29	c.G5819A	p.R1940K	CCCTTTCTGGTGG	.	223	28	264	0	.	93	T	155723018	C	T	155723018	3	4	3	1	0	0	0	0	1	0	0	0	6572	913	32	3	919	3	GON4L	1	155723018	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	1798523	155723018	93527603	6	227											
RNASEL	6041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182554500	182554500	+	Missense_Mutation	SNP	T	T	C	rs200144732		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RNASEL	NM_021133	exon2	c.A1442G	p.Y481C	TGGGTGTATCCAC	.	223	42	374	1	T|0.999;C|0.001	336	C	182554500	T	C	182554500	3	2	3	1	0	0	0	0	1	0	0	0	13416	1638	57	2	807	2	RNASEL	1	182554500	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	26831482	182554500	66696121	7	228											
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202572235	202572235	+	Silent	SNP	G	G	A	rs141305662	byfrequency	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SYT2	NM_177402	exon4	c.C357T	p.D119D	CTCTGCGTCGTCG	.	95	19	115	0	G|0.999;A|0.001	93	A	202572235	G	A	202572235	2	1	3	1	0	0	0	0	0	0	0	1	15471	1136	40	1		1	SYT2	1	202572235	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	20017735	202572235	46678386	8	229											
DUSP10	11221	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	221912367	221912367	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DUSP10	NM_007207	exon2	c.C720T	p.T240T	TTCATTGGTATTC	.	156	19	234	0	.	659	A	221912367	G	A	221912367	2	1	3	1	0	0	0	0	0	0	0	1	4810	1335	47	3		3	DUSP10	1	221912367	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	19340132	221912367	27338254	9	230											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237948157	237948157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RYR2	NM_001035	exon90	c.T13145A	p.L4382Q	TTGGCCTGGATCT	.	77	23	84	0	.	158	A	237948157	T	A	237948157	3	1	3	1	0	0	0	0	1	0	0	0	13769	1580	55	4	13503	4	RYR2	1	237948157	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	16035790	237948157	11302464	10	231											
OR2T4	127074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248525606	248525606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2T4	NM_001004696	exon1	c.C724A	p.P242T	CTCATCCCTGTGG	.	1004	67	1155	0	.	68	A	248525606	C	A	248525606	3	1	3	1	0	0	0	0	1	0	0	0	11027	623	22	3	726	3	OR2T4	1	248525606	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	10577449	248525606	725015	11	232											
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248551626	248551626	+	Silent	SNP	C	C	T	rs148186126		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	OR2T6,arm,malignant_melanoma,0	OR2T6	NM_001005471	exon1	c.C717T	p.A239A	CTTTGCCACCTGC	.	310	86	307	0	.	71	T	248551626	C	T	248551626	2	4	3	1	0	0	0	0	0	0	0	1	11029	581	21	3		3	OR2T6	1	248551626	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	26020	248551626	698995	12	233											
OR2G6	391211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248684959	248684959	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2G6	NM_001013355	exon1	c.C12T	p.T4T	GGAAACCAACAAC	.	215	74	250	0	.	71	T	248684959	C	T	248684959	2	4	3	1	0	0	0	0	0	0	0	1	11000	581	21	3		3	OR2G6	1	248684959	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	133333	248684959	565662	13	234											
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248756794	248756794	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2T10	NM_001004693	exon1	c.C276A	p.I92I	GACCGAGATGGTC	.	175	30	219	0	.	69	T	248756794	G	T	248756794	2	4	3	1	0	0	0	0	0	0	0	1	11017	932	33	3		3	OR2T10	1	248756794	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	71835	248756794	493827	14	235											
FAHD2A	51011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96072737	96072737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAHD2A	NM_016044	exon3	c.C294A	p.F98L	AACCTTCCTGGCT	.	391	51	547	1	.	91	A	96072737	C	A	96072737	3	1	3	1	0	0	0	0	1	0	0	0	5373	854	30	3	300	3	FAHD2A	2	96072737	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10		96072737	147126636	15	236											
ACTR3	10096	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	114691952	114691952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ACTR3	NM_005721	exon6	c.G529T	p.D177Y	ACTCATGTCATTC	.	40	8	86	1	.	91	T	114691952	G	T	114691952	3	4	3	1	0	0	0	0	1	0	0	0	212	1377	48	3	551	3	ACTR3	2	114691952	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	18619215	114691952	128507421	16	237											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130930247	130930247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SMPD4	NM_017751	exon7	c.C575A	p.P192Q	TCGAACGGATCTG	.	158	34	184	0	.	90	T	130930247	G	T	130930247	3	4	3	1	0	0	0	0	1	0	0	0	14807	1116	39	1	2081	1	SMPD4	2	130930247	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	16238295	130930247	112269126	17	238											
GALNT5	11227	ucsc.edu;bcgsc.ca	37	2	158167786	158167786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GALNT5	NM_014568	exon10	c.A2749T	p.I917F	CAAAAGATCCTGA	.	58	9	88	2	.	290	T	158167786	A	T	158167786	3	4	3	1	0	0	0	0	1	0	0	0	6216	333	12	4	2787	4	GALNT5	2	158167786	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	27237539	158167786	85031587	18	239											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160807990	160807990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PLA2R1	NM_001195641	exon24	c.C3401A	p.T1134N	TACCAAGTCATAT	.	434	137	574	0	.	93	T	160807990	G	T	160807990	3	4	3	1	0	0	0	0	1	0	0	0	12010	1029	36	3	1026	3	PLA2R1	2	160807990	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	2640204	160807990	82391383	19	240											
TRAF3IP1	26146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239237694	239237694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TRAF3IP1	NM_015650	exon5	c.G626T	p.G209V	ATGGCGGAAACAG	.	203	34	217	0	.	228	T	239237694	G	T	239237694	3	4	3	1	0	0	0	0	1	0	0	0	16437	1174	41	3	644	3	TRAF3IP1	2	239237694	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	78429704	239237694	3961679	20	241											
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50220186	50220186	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SEMA3F	NM_004186	exon9	c.G873T	p.A291A	CCCCGCGGTGTAC	.	24	11	47	0	.	279	T	50220186	G	T	50220186	2	4	3	1	0	0	0	0	0	0	0	1	14029	1103	39	1		1	SEMA3F	3	50220186	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		50220186	147802244	21	242											
ABHD14B	84836	broad.mit.edu;bcgsc.ca	37	3	52003453	52003453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ABHD14B	NM_032750	exon4	c.G622A	p.G208R	GGAGCCCCTGCAG	.	86	5	129	0	.	90	T	52003453	C	T	52003453	3	4	3	1	0	0	0	0	1	0	0	0	80	623	22	3	14	3	ABHD14B	3	52003453	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	1783267	52003453	146018977	22	243											
PRICKLE2	166336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64145681	64145681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRICKLE2	NM_198859	exon4	c.G331A	p.E111K	AGTTTTCGCGTTT	.	146	35	224	2	.	95	T	64145681	C	T	64145681	3	4	3	1	0	0	0	0	1	0	0	0	12487	893	31	1	2223	1	PRICKLE2	3	64145681	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	12142228	64145681	133876749	23	244											
IMPG2	50939	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100972618	100972618	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	IMPG2	NM_016247	exon11	c.A1161T	p.G387G	CAAAACTCCTCTC	.	57	18	74	1	.	93	A	100972618	T	A	100972618	2	1	3	1	0	0	0	0	0	0	0	1	7729	1538	54	4		4	IMPG2	3	100972618	Silent	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	36826937	100972618	97049812	24	245											
FBXO40	51725	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341432	121341432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FBXO40	NM_016298	exon3	c.A1156T	p.T386S	GGGATCACTGTGG	.	99	8	130	0	.	273	T	121341432	A	T	121341432	3	4	3	1	0	0	0	0	1	0	0	0	5749	159	6	4	1162	4	FBXO40	3	121341432	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	20368814	121341432	76680998	25	246											
COL6A6	131873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130368255	130368255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	COL6A6	NM_001102608	exon32	c.C5582A	p.A1861E	CGGGGGCACACAC	.	139	21	115	1	.	76	A	130368255	C	A	130368255	3	1	3	1	0	0	0	0	1	0	0	0	3703	710	25	3	5708	3	COL6A6	3	130368255	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	9026823	130368255	67654175	26	247											
MRPS22	56945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139062905	139062905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MRPS22	NM_020191	exon1	c.C37T	p.L13F	TGGAGCCTCTTGA	.	54	16	49	0	.	93	T	139062905	C	T	139062905	3	4	3	1	0	0	0	0	1	0	0	0	9833	681	24	3	39	3	MRPS22	3	139062905	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	8694650	139062905	58959525	27	248											
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142388293	142388293	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PLS1	NM_001172312	exon3	c.C132T	p.S44S	AGCAAGCCTTCCT	.	79	9	107	0	.	91	T	142388293	C	T	142388293	2	4	3	1	0	0	0	0	0	0	0	1	12107	738	26	3		3	PLS1	3	142388293	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	3325388	142388293	55634137	28	249											
CCDC39	339829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180332768	180332768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CCDC39	NM_181426	exon20	c.A2767G	p.R923G	ATGGCCTAGAAGG	.	102	38	140	1	.	72	C	180332768	T	C	180332768	3	2	3	1	0	0	0	0	1	0	0	0	2811	1521	53	2	62	2	CCDC39	3	180332768	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	37944475	180332768	17689662	29	250											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	184039489	184039489	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	EIF4G1	NM_001194946	exon11	c.G1138T	p.E380X	GAACCAGAGGTGG	.	135	21	163	0	.	344	T	184039489	G	T	184039489	4	4	3	1	0	0	0	0	0	1	0	0	5036	943	33	3	1147	3	EIF4G1	3	184039489	Nonsense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	3706721	184039489	13982941	30	251											
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	651215	651215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PDE6B	NM_001145291	exon10	c.A1333G	p.K445E	AACCGCAAGGACA	.	192	32	173	0	.	90	G	651215	A	G	651215	3	3	3	1	0	0	0	0	1	0	0	0	11646	131	5	2	1371	2	PDE6B	4	651215	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10		651215	190503061	31	252											
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5837733	5837733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CRMP1	NM_001014809	exon11	c.G1532A	p.R511K	CCTTTCCTTGGGT	.	91	18	142	0	.	92	T	5837733	C	T	5837733	3	4	3	1	0	0	0	0	1	0	0	0	3890	681	24	3	544	3	CRMP1	4	5837733	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	5186518	5837733	185316543	32	253											
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42580401	42580401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ATP8A1	NM_001105529	exon12	c.G1004A	p.G335D	GCGCCACCATCTG	.	91	14	117	0	.	92	T	42580401	C	T	42580401	3	4	3	1	0	0	0	0	1	0	0	0	1192	507	18	3	2594	3	ATP8A1	4	42580401	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	36742668	42580401	148573875	33	254											
FAM134B	54463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16474884	16474884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAM134B	NM_001034850	exon9	c.C1460T	p.S487L	AAACCTGAAGACT	.	115	54	135	0	.	137	A	16474884	G	A	16474884	3	1	3	1	0	0	0	0	1	0	0	0	5446	1294	45	3	37	3	FAM134B	5	16474884	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		16474884	164440376	34	255											
C5orf22	55322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31534433	31534433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C5orf22	NM_018356	exon2	c.G136C	p.V46L	AGTAATGTAAGTT	.	328	64	505	0	.	92	C	31534433	G	C	31534433	3	2	3	1	0	0	0	0	1	0	0	0	2285	1377	48	4	142	4	C5orf22	5	31534433	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	15059549	31534433	149380827	35	256											
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138855859	138855859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TMEM173	NM_198282	exon8	c.C1127A	p.T376K	AAATCCGTGCGGA	.	67	30	116	0	.	69	T	138855859	G	T	138855859	3	4	3	1	0	0	0	0	1	0	0	0	16086	1145	40	1	16	1	TMEM173	5	138855859	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	107321426	138855859	42059401	36	257											
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237874	140237874	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDHA10	NM_031859	exon1	c.T2241C	p.S747S	CTGGTCTTACTCG	.	134	29	285	0	.	99	C	140237874	T	C	140237874	2	2	3	1	0	0	0	0	0	0	0	1	11520	1596	56	2		2	PCDHA10	5	140237874	Silent	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	1382015	140237874	40677386	37	258											
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140746244	140746244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDHGA5	NM_032054	exon1	c.G2347A	p.E783K	AGTGAAGAGAGCT	.	81	16	161	0	.	35	A	140746244	G	A	140746244	3	1	3	1	0	0	0	0	1	0	0	0	11557	943	33	3	2349	3	PCDHGA5	5	140746244	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	508370	140746244	40169016	38	259											
GLO1	2739	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	38670784	38670784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GLO1	NM_006708	exon1	c.C47T	p.A16V	CTGAGGGCGGCCT	.	51	9	76	0	.	227	A	38670784	G	A	38670784	3	1	3	1	0	0	0	0	1	0	0	0	6449	1203	42	3	531	3	GLO1	6	38670784	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		38670784	132444283	39	260											
CDC5L	988	broad.mit.edu;bcgsc.ca	37	6	44397460	44397460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CDC5L	NM_001253	exon14	c.T1904C	p.V635A	AGGATGTTTTGGT	.	113	6	182	0	.	229	C	44397460	T	C	44397460	3	2	3	1	0	0	0	0	1	0	0	0	3082	1725	60	2	1958	2	CDC5L	6	44397460	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	5726676	44397460	126717607	40	261											
FBXO9	26268	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52957296	52957296	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FBXO9	NM_012347	exon7	c.C753T	p.Y251Y	TCCGTACACGTCC	.	257	49	398	2	.	227	T	52957296	C	T	52957296	2	4	3	1	0	0	0	0	0	0	0	1	5762	489	17	3		3	FBXO9	6	52957296	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	8559836	52957296	118157771	41	262											
TNRC18	84629	ucsc.edu;bcgsc.ca	37	7	5391483	5391483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TNRC18	NM_001080495	exon17	c.T5437C	p.F1813L	CGCTGAAGGAGGA	.	47	5	65	0	.	46	G	5391483	A	G	5391483	3	3	3	1	0	0	0	0	1	0	0	0	16336	72	3	2	3525	2	TNRC18	7	5391483	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10		5391483	153747180	42	263											
HOXA4	3201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27168891	27168892	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	GA	GA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	.	.	.	p.HP305QS	GGTGGGGATGGAG	.	343	56	321	1	.	.	AT	27168892	GA	AT	27168891	3	1	3	1	0	0	0	0	1	0	0	0	7294	1174	41	3	50	3	HOXA4	7	27168891	Missense_Mutation	DNP	GA	TCGA-BC-A10R-01A-11D-A12Z-10	21777408	27168891	131969772	43	264											
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84666319	84666319	+	Silent	SNP	C	C	G	rs143217112	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SEMA3D	NM_152754	exon10	c.G1077C	p.V359V	GCTATACACACAA	.	66	15	117	0	C|1.000;T|0.000	138	G	84666319	C	G	84666319	2	3	3	1	0	0	0	0	0	0	0	1	14027	465	17	4		4	SEMA3D	7	84666319	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	57497428	84666319	74472344	44	265											
STAG3	10734	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99800188	99800188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	STAG3	NM_012447	exon25	c.C2675A	p.S892X	CAGCCTCAGATGT	.	46	6	71	0	.	543	A	99800188	C	A	99800188	4	1	3	1	0	0	0	0	0	1	0	0	15243	838	29	3	2769	3	STAG3	7	99800188	Nonsense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	15133869	99800188	59338475	45	266											
FLNC	2318	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128489494	128489494	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FLNC	NM_001127487	exon30	c.G5061A	p.G1687G	GGATGGGGCAGAG	.	73	10	94	0	.	141	A	128489494	G	A	128489494	2	1	3	1	0	0	0	0	0	0	0	1	5935	1219	43	3		3	FLNC	7	128489494	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	28689306	128489494	30649169	46	267											
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135107050	135107050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CNOT4	NM_001190850	exon3	c.A227G	p.Q76R	ATCCTTTGCAGCT	.	206	34	272	0	.	90	C	135107050	T	C	135107050	3	2	3	1	0	0	0	0	1	0	0	0	3621	1812	63	2	1833	2	CNOT4	7	135107050	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	6617556	135107050	24031613	47	268											
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142964755	142964755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GSTK1	NM_001143679	exon5	c.C634A	p.L212M	GGACTTCTGGAAA	.	108	42	103	0	.	90	A	142964755	C	A	142964755	3	1	3	1	0	0	0	0	1	0	0	0	6836	912	32	3	652	3	GSTK1	7	142964755	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	7857705	142964755	16173908	48	269											
FAM160B2	64760	ucsc.edu;bcgsc.ca	37	8	21958157	21958157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_022749	exon11	c.A1394G	p.E465G	CCCACGAGGGGAT	.	52	4	71	2	.	.	G	21958157	A	G	21958157	3	3	3	1	0	0	0	0	1	0	0	0	5471	304	11	2	1235	2	FAM160B2	8	21958157	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10		21958157	124405865	49	270											
MAK16	84549	ucsc.edu;bcgsc.ca	37	8	33354202	33354202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MAK16	NM_032509	exon8	c.G582T	p.E194D	ACAGGAGGCAGAG	.	41	4	83	0	.	69	T	33354202	G	T	33354202	3	4	3	1	0	0	0	0	1	0	0	0	9198	991	35	3	612	3	MAK16	8	33354202	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	11396045	33354202	113009820	50	271											
TM2D2	83877	ucsc.edu;bcgsc.ca	37	8	38851171	38851171	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TM2D2	NM_078473	exon3	c.T324C	p.G108G	GGCCTGACCGCCG	.	29	4	64	0	.	90	G	38851171	A	G	38851171	2	3	3	1	0	0	0	0	0	0	0	1	15961	262	10	2		2	TM2D2	8	38851171	Silent	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	5496969	38851171	107512851	51	272											
ST18	9705	ucsc.edu;bcgsc.ca	37	8	53124658	53124658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ST18	NM_014682	exon8	c.T67C	p.S23P	TTAGTGAATCCAT	.	36	4	48	0	.	95	G	53124658	A	G	53124658	3	3	3	1	0	0	0	0	1	0	0	0	15211	246	9	2	3152	2	ST18	8	53124658	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	14273487	53124658	93239364	52	273											
CYP7A1	1581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59409293	59409293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CYP7A1	NM_000780	exon3	c.C778T	p.R260C	ACATGCGCAGGCT	.	172	41	203	0	.	91	A	59409293	G	A	59409293	3	1	3	1	0	0	0	0	1	0	0	0	4196	1087	38	1	752	1	CYP7A1	8	59409293	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	6284635	59409293	86954729	53	274											
FOXH1	8928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145700607	145700607	+	Missense_Mutation	SNP	C	C	A	rs150426097	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FOXH1	NM_003923	exon2	c.G212T	p.R71M	TCTTCCCTGAAGA	.	58	13	59	0	C|1.000;T|0.000	226	A	145700607	C	A	145700607	3	1	3	1	0	0	0	0	1	0	0	0	6008	681	24	3	893	3	FOXH1	8	145700607	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	86291314	145700607	663415	54	275											
IFNW1	3467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21141286	21141286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	IFNW1	NM_002177	exon1	c.G284T	p.R95L	GAGGAGCGCTCTG	.	30	9	113	0	.	90	A	21141286	C	A	21141286	3	1	3	1	0	0	0	0	1	0	0	0	7552	768	27	1	307	1	IFNW1	9	21141286	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10		21141286	120072145	55	276											
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33468831	33468831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	NOL6	NM_022917	exon8	c.G1066C	p.V356L	AGACAACCAGCAT	.	63	22	114	0	.	92	G	33468831	C	G	33468831	3	3	3	1	0	0	0	0	1	0	0	0	10525	507	18	4	2450	4	NOL6	9	33468831	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	12327545	33468831	107744600	56	277											
URM1	81605	ucsc.edu;bcgsc.ca	37	9	131151971	131151971	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	URM1	NM_030914	exon5	c.C264T	p.D88D	TCAGGACCAGGAC	.	29	4	57	0	.	90	T	131151971	C	T	131151971	2	4	3	1	0	0	0	0	0	0	0	1	17024	506	18	3		3	URM1	9	131151971	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	97683140	131151971	10061460	57	278											
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7285628	7285628	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SFMBT2	NM_001029880	exon9	c.C1012T	p.L338L	GTCTTAGGTCATC	.	104	11	93	0	.	141	A	7285628	G	A	7285628	2	1	3	1	0	0	0	0	0	0	0	1	14158	991	35	3		3	SFMBT2	10	7285628	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		7285628	128249119	58	279											
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13212934	13212934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MCM10	NM_018518	exon3	c.A20G	p.N7S	AAGACAATCTGTC	.	247	127	168	0	.	653	G	13212934	A	G	13212934	3	3	3	1	0	0	0	0	1	0	0	0	9385	101	4	2	26	2	MCM10	10	13212934	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	5927306	13212934	122321813	59	280											
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22606865	22606866	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	COMMD3	NM_012071	exon2	c.192_193insG	p.A64fs	TCATGCAGCAGCT	.	368	63	305	0	.	115	G	22606866	-	G	22606865	7	5	3	1	0	1	1	0	0	0	0	0	3717	175	7	0	198	0	COMMD3	10	22606865	Frame_Shift_Ins	INS	-	TCGA-BC-A10R-01A-11D-A12Z-10	9393931	22606865	112927882	60	281											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37505198	37505198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ANKRD30A	NM_052997	exon32	c.G2791C	p.G931R	CGTACAGGAAAAA	.	576	57	475	0	.	161	C	37505198	G	C	37505198	3	2	3	1	0	0	0	0	1	0	0	0	658	1001	35	4	2917	4	ANKRD30A	10	37505198	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	14898333	37505198	98029549	61	282											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85955343	85955343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CDHR1	NM_001171971	exon2	c.T149C	p.V50A	CCCCTGTAGGTGA	.	66	17	96	0	.	91	C	85955343	T	C	85955343	3	2	3	1	0	0	0	0	1	0	0	0	3118	1638	57	2	155	2	CDHR1	10	85955343	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	48450145	85955343	49579404	62	283											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135025036	135025036	+	Missense_Mutation	SNP	G	G	T	rs151235501	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KNDC1	NM_152643	exon22	c.G4019T	p.G1340V	ACAGCGGGCTGCT	.	65	23	74	0	G|1.000;A|0.000	229	T	135025036	G	T	135025036	3	4	3	1	0	0	0	0	1	0	0	0	8426	1232	43	3	4105	3	KNDC1	10	135025036	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	49069693	135025036	509711	63	284											
OR52E8	390079	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5878726	5878726	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR52E8	NM_001005168	exon1	c.G207T	p.L69L	CATGGCCAGGAAG	.	111	21	235	1	.	70	A	5878726	C	A	5878726	2	1	3	1	0	0	0	0	0	0	0	1	11118	581	21	3		3	OR52E8	11	5878726	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10		5878726	129127790	64	285											
ARNTL	406	ucsc.edu;bcgsc.ca	37	11	13398211	13398211	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ARNTL	NM_001030272	exon15	c.C1347T	p.D449D	CGGGGACCCAACC	.	35	4	29	0	.	90	T	13398211	C	T	13398211	2	4	3	1	0	0	0	0	0	0	0	1	967	506	18	3		3	ARNTL	11	13398211	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	7519485	13398211	121608305	65	286											
ARFGAP2	84364	broad.mit.edu;bcgsc.ca	37	11	47195386	47195387	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ARFGAP2	NM_032389	exon6	c.486_487insC	p.P162fs	CCAGGCAGGGGGC	.	28	14	39	0	.	69	G	47195387	-	G	47195386	7	5	3	1	0	1	1	0	0	0	0	0	850	175	7	0	1123	0	ARFGAP2	11	47195386	Frame_Shift_Ins	INS	-	TCGA-BC-A10R-01A-11D-A12Z-10	33797175	47195386	87811130	66	287											
DDB2	1643	ucsc.edu;bcgsc.ca	37	11	47260382	47260382	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DDB2	NM_000107	exon10	c.A1266G	p.E422E	GGAGGAAGCCAGG	.	38	4	43	0	.	971	G	47260382	A	G	47260382	2	3	3	1	0	0	0	0	0	0	0	1	4324	69	3	2		2	DDB2	11	47260382	Silent	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	64996	47260382	87746134	67	288											
OR5R1	219479	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56185374	56185374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR5R1	NM_001004744	exon1	c.G335C	p.C112S	AGGAAACACTCAG	.	23	7	67	1	.	70	G	56185374	C	G	56185374	3	3	3	1	0	0	0	0	1	0	0	0	11180	478	17	4	641	4	OR5R1	11	56185374	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	8924992	56185374	78821142	68	289											
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5154891	5154891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KCNA5	NM_002234	exon1	c.A1578T	p.E526D	CCGGGAAACGGAT	.	64	14	114	0	.	715	T	5154891	A	T	5154891	3	4	3	1	0	0	0	0	1	0	0	0	8006	11	1	4	1580	4	KCNA5	12	5154891	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10		5154891	128697004	69	290											
WBP11	51729	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14947913	14947913	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	WBP11	NM_016312	exon6	c.A513G	p.S171S	ATAGGCTGAGGTT	.	160	36	272	1	.	92	C	14947913	T	C	14947913	2	2	3	1	0	0	0	0	0	0	0	1	17255	1567	55	2		2	WBP11	12	14947913	Silent	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	9793022	14947913	118903982	70	291											
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48135289	48135289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RAPGEF3	NM_001098531	exon19	c.T1922C	p.L641P	CCTACCAGCTCAT	.	143	30	141	0	.	660	G	48135289	A	G	48135289	3	3	3	1	0	0	0	0	1	0	0	0	13045	202	7	2	889	2	RAPGEF3	12	48135289	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	33187376	48135289	85716606	71	292											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109637260	109637260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ACACB	NM_001093	exon17	c.C2681T	p.P894L	ACGATCCTACAGT	.	83	15	91	0	.	98	T	109637260	C	T	109637260	3	4	3	1	0	0	0	0	1	0	0	0	107	681	24	3	2747	3	ACACB	12	109637260	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	61501971	109637260	24214635	72	293											
HPD	3242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122284995	122284995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	HPD	NM_002150	exon10	c.A722G	p.N241S	GGCTCATTGATGG	.	105	14	125	0	.	90	C	122284995	T	C	122284995	3	2	3	1	0	0	0	0	1	0	0	0	7332	1493	52	2	479	2	HPD	12	122284995	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	12647735	122284995	11566900	73	294											
FZD10	11211	broad.mit.edu;bcgsc.ca	37	12	130648989	130648989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FZD10	NM_007197	exon1	c.T1502C	p.V501A	CCGCCGTGGAGAT	.	55	7	73	0	.	658	C	130648989	T	C	130648989	3	2	3	1	0	0	0	0	1	0	0	0	6129	1696	59	2	1504	2	FZD10	12	130648989	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	8363994	130648989	3202906	74	295											
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25459431	25459431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CENPJ	NM_018451	exon13	c.A3460T	p.S1154C	GATGACTGATTTC	.	115	31	258	0	.	92	A	25459431	T	A	25459431	3	1	3	1	0	0	0	0	1	0	0	0	3234	1580	55	4	576	4	CENPJ	13	25459431	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10		25459431	89710447	75	296											
N4BP2L1	90634	ucsc.edu;bcgsc.ca	37	13	32981893	32981893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	N4BP2L1	NM_052818	exon2	c.T196C	p.F66L	TGGGAAAGTCATG	.	33	4	47	0	.	91	G	32981893	A	G	32981893	3	3	3	1	0	0	0	0	1	0	0	0	10111	72	3	2	624	2	N4BP2L1	13	32981893	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	7522462	32981893	82187985	76	297											
TTC5	91875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20763925	20763925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TTC5	NM_138376	exon7	c.A785G	p.Q262R	TCTCGTTGCCGGG	.	106	18	138	0	.	91	C	20763925	T	C	20763925	3	2	3	1	0	0	0	0	1	0	0	0	16708	1812	63	2	553	2	TTC5	14	20763925	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10		20763925	86585615	77	298											
PARP2	10038	ucsc.edu;bcgsc.ca	37	14	20820418	20820418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PARP2	NM_005484	exon7	c.C551T	p.T184M	ACAAAACGAAAAA	.	25	4	34	0	.	661	T	20820418	C	T	20820418	3	4	3	1	0	0	0	0	1	0	0	0	11461	536	19	1	577	1	PARP2	14	20820418	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	56493	20820418	86529122	78	299											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23851737	23851737	+	Missense_Mutation	SNP	C	C	A	rs61731171	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYH6	NM_002471	exon38	c.G5696T	p.R1899L	ACCTTGCGGAACT	.	132	26	199	0	C|0.986;T|0.014	94	A	23851737	C	A	23851737	3	1	3	1	0	0	0	0	1	0	0	0	10038	768	27	1	131	1	MYH6	14	23851737	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	3031319	23851737	83497803	79	300											
AKAP6	9472	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	33165314	33165314	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	AKAP6	NM_004274	exon9	c.A2998T	p.K1000X	CTTTACAAGGTTA	.	143	44	225	1	.	733	T	33165314	A	T	33165314	4	4	3	1	0	0	0	0	0	1	0	0	455	131	5	4	3028	4	AKAP6	14	33165314	Nonsense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	9313577	33165314	74184226	80	301											
SIPA1L1	26037	ucsc.edu;bcgsc.ca	37	14	72139334	72139334	+	Silent	SNP	G	G	T	rs144855084	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SIPA1L1	NM_015556	exon9	c.G3099T	p.P1033P	CACCCCGCGGAGG	.	41	4	74	0	G|0.999;A|0.000	156	T	72139334	G	T	72139334	2	4	3	1	0	0	0	0	0	0	0	1	14329	1074	38	1		1	SIPA1L1	14	72139334	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	38974020	72139334	35210206	81	302											
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104488538	104488538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TDRD9	NM_153046	exon24	c.C2477T	p.T826I	TTAAAACCCTTCC	.	123	39	268	0	.	70	T	104488538	C	T	104488538	3	4	3	1	0	0	0	0	1	0	0	0	15733	507	18	3	2571	3	TDRD9	14	104488538	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	32349204	104488538	2861002	82	303											
INF2	64423	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105175658	105175658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INF2	NM_022489	exon11	c.A1990G	p.T664A	GGAGATACCACCA	.	37	4	63	0	.	492	G	105175658	A	G	105175658	3	3	3	1	0	0	0	0	1	0	0	0	7734	391	14	2	2032	2	INF2	14	105175658	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	687120	105175658	2173882	83	304											
GABRA5	2558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27114447	27114447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GABRA5	NM_001165037	exon3	c.T52G	p.F18V	CTTCTCTTTTGTA	.	234	48	409	1	.	91	G	27114447	T	G	27114447	3	3	3	1	0	0	0	0	1	0	0	0	6164	1609	56	5	54	5	GABRA5	15	27114447	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10		27114447	75416945	84	305											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31295063	31295063	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TRPM1	NM_001252020	exon27	c.T3891G	p.L1297L	CCGGAGAAGATAC	.	82	17	138	0	.	94	C	31295063	A	C	31295063	2	2	3	1	0	0	0	0	0	0	0	1	16582	233	9	5		5	TRPM1	15	31295063	Silent	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	4180616	31295063	71236329	85	306											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	34105063	34105063	+	Splice_Site	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RYR3	NM_001243996	exon72	c.10243-1G>C	.	TTTTCAGTCTGAT	.	56	11	87	0	.	520	C	34105063	G	C	34105063	5	2	3	1	0	0	0	0	0	0	1	0	13770	1043	36	4	10547	4	RYR3	15	34105063	Splice_Site	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	2810000	34105063	68426329	86	307											
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41377743	41377743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INO80	NM_017553	exon7	c.G697A	p.E233K	GTTCTTCATCTCT	.	315	62	548	0	.	72	T	41377743	C	T	41377743	3	4	3	1	0	0	0	0	1	0	0	0	7746	835	29	3	4093	3	INO80	15	41377743	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	7272680	41377743	61153649	87	308											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75968322	75968322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CSPG4	NM_001897	exon10	c.G6538A	p.E2180K	CGGCCTCGGGGAC	.	33	12	23	0	.	229	T	75968322	C	T	75968322	3	4	3	1	0	0	0	0	1	0	0	0	3960	893	31	1	434	1	CSPG4	15	75968322	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	34590579	75968322	26563070	88	309											
PDE8A	5151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85666356	85666356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PDE8A	NM_002605	exon19	c.C2017T	p.H673Y	ACAAAGCACTTTG	.	86	17	138	2	.	94	T	85666356	C	T	85666356	3	4	3	1	0	0	0	0	1	0	0	0	11653	710	25	3	2091	3	PDE8A	15	85666356	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	9698034	85666356	16865036	89	310											
ZNF263	10127	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3335685	3335685	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ZNF263	NM_005741	exon3	c.A573T	p.L191F	AGCATTATCTGCT	.	179	32	209	1	.	94	T	3335685	A	T	3335685	3	4	3	1	0	0	0	0	1	0	0	0	17800	446	16	4	583	4	ZNF263	16	3335685	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10		3335685	87019068	90	311											
SLC9A5	6553	broad.mit.edu;mdanderson.org	37	16	67282983	67282983	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SLC9A5	NM_004594	exon1	c.G66A	p.Q22Q	CACCCAGAAGCCA	.	10	6	13	0	.	92	A	67282983	G	A	67282983	2	1	3	1	0	0	0	0	0	0	0	1	14717	933	33	3		3	SLC9A5	16	67282983	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	63947298	67282983	23071770	91	312											
CENPN	55839	ucsc.edu;bcgsc.ca	37	16	81058329	81058329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CENPN	NM_001100624	exon8	c.A643G	p.T215A	TTTGAAACTCACA	.	38	4	91	0	.	90	G	81058329	A	G	81058329	3	3	3	1	0	0	0	0	1	0	0	0	3238	43	2	2	757	2	CENPN	16	81058329	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	13775346	81058329	9296424	92	313											
RPL13	6137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89629361	89629361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RPL13	NM_000977	exon6	c.C547T	p.R183C	AGTCTCCGTATGG	.	120	13	165	0	.	90	T	89629361	C	T	89629361	3	4	3	1	0	0	0	0	1	0	0	0	13559	652	23	1	565	1	RPL13	16	89629361	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	8571032	89629361	725392	93	314											
CAMTA2	23125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4883278	4883278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CAMTA2	NM_001171167	exon9	c.G1408A	p.D470N	TGTCATCATCTTG	.	29	9	49	0	.	91	T	4883278	C	T	4883278	3	4	3	1	0	0	0	0	1	0	0	0	2614	826	29	3	2379	3	CAMTA2	17	4883278	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10		4883278	76311932	94	315											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578524	7578524	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	TP53,head_neck,carcinoma,+2	TP53	NM_000546	exon5	c.C406T	p.Q136X	CCAGTTGGCAAAA	.	35	21	48	0	.	70225	A	7578524	G	A	7578524	4	1	3	1	0	0	0	0	0	1	0	0	16378	1357	47	3	892	3	TP53	17	7578524	Nonsense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	2695246	7578524	73616686	95	316											
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	12666487	12666487	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYOCD	NM_001146312	exon14	c.C2487T	p.P829P	CAAGCCCTCGGCT	.	56	34	121	0	.	93	T	12666487	C	T	12666487	2	4	3	1	0	0	0	0	0	0	0	1	10087	668	24	3		3	MYOCD	17	12666487	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	5087963	12666487	68528723	96	317											
TOP3A	7156	ucsc.edu;bcgsc.ca	37	17	18206022	18206022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TOP3A	NM_004618	exon6	c.A515G	p.Q172R	AACACCTGCAGAT	.	35	5	75	0	.	228	C	18206022	T	C	18206022	3	2	3	1	0	0	0	0	1	0	0	0	16364	1580	55	2	2546	2	TOP3A	17	18206022	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	5539535	18206022	62989188	97	318											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27449219	27449219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYO18A	NM_078471	exon3	c.A1052C	p.K351T	CACACCTTCTCCG	.	126	74	262	0	.	22	G	27449219	T	G	27449219	3	3	3	1	0	0	0	0	1	0	0	0	10065	1609	56	5	5272	5	MYO18A	17	27449219	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	9243197	27449219	53745991	98	319											
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38189358	38189358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MED24	NM_014815	exon8	c.G773A	p.G258D	GTCTCGCCTGTCA	.	37	18	87	0	.	187	T	38189358	C	T	38189358	3	4	3	1	0	0	0	0	1	0	0	0	9442	739	26	3	2272	3	MED24	17	38189358	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	10740139	38189358	43005852	99	320											
GRN	2896	ucsc.edu;bcgsc.ca	37	17	42428482	42428482	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GRN	NM_002087	exon8	c.C786T	p.S262S	CCTCTCCAAGGAG	.	42	4	73	0	.	517	T	42428482	C	T	42428482	2	4	3	1	0	0	0	0	0	0	0	1	6804	581	21	3		3	GRN	17	42428482	Silent	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	4239124	42428482	38766728	100	321											
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56582147	56582147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MTMR4	NM_004687	exon12	c.C1292T	p.T431M	TCCAACGTCCTGT	.	47	12	81	0	.	91	A	56582147	G	A	56582147	3	1	3	1	0	0	0	0	1	0	0	0	9946	1145	40	1	2327	1	MTMR4	17	56582147	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	14153665	56582147	24613063	101	322											
METTL2A	339175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60501620	60501620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	METTL2A	NM_181725	exon2	c.G151A	p.E51K	GCGGCGGAGAGAA	.	76	20	127	0	.	248	A	60501620	G	A	60501620	3	1	3	1	0	0	0	0	1	0	0	0	9499	1175	41	3	157	3	METTL2A	17	60501620	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	3919473	60501620	20693590	102	323											
ENPP7	339221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77711821	77711821	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ENPP7	NM_178543	exon5	c.G1353A	p.V451V	GACCGTGATTCTT	.	38	16	43	0	.	92	A	77711821	G	A	77711821	2	1	3	1	0	0	0	0	0	0	0	1	5135	1277	45	3		3	ENPP7	17	77711821	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	17210201	77711821	3483389	103	324											
BAIAP2	10458	ucsc.edu;bcgsc.ca	37	17	79060379	79060379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	BAIAP2	NM_001144888	exon6	c.A488G	p.Q163R	AGCTGCAGGTAGG	.	49	6	92	1	.	90	G	79060379	A	G	79060379	3	3	3	1	0	0	0	0	1	0	0	0	1301	202	7	2	510	2	BAIAP2	17	79060379	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	1348558	79060379	2134831	104	325											
NPLOC4	55666	ucsc.edu;bcgsc.ca	37	17	79567437	79567437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	NPLOC4	NM_017921	exon9	c.G851A	p.S284N	TCCAAGCTGTTCT	.	25	4	62	0	.	24	T	79567437	C	T	79567437	3	4	3	1	0	0	0	0	1	0	0	0	10586	797	28	3	1011	3	NPLOC4	17	79567437	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	507058	79567437	1627773	105	326											
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	67992724	67992724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SOCS6	NM_004232	exon2	c.G820C	p.V274L	GACCTAGTTGTCG	.	164	55	279	0	.	721	C	67992724	G	C	67992724	3	2	3	1	0	0	0	0	1	0	0	0	14918	1029	36	4	822	4	SOCS6	18	67992724	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		67992724	10084524	106	327											
ATP9B	374868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77108133	77108134	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ATP9B	NM_198531	exon25	c.2840_2841insTG	p.A947fs	TCCAGGCTGTGTT	.	240	62	392	0	.	93	TG	77108134	-	TG	77108133	7	5	3	1	0	1	1	0	0	0	0	0	1199	811	28	0	2938	0	ATP9B	18	77108133	Frame_Shift_Ins	INS	-	TCGA-BC-A10R-01A-11D-A12Z-10	9115409	77108133	969115	107	328											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	756999	756999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C19orf21	NM_173481	exon2	c.G53C	p.G18A	ACCGTGGCACCGG	.	116	15	113	0	.	91	C	756999	G	C	756999	3	2	3	1	0	0	0	0	1	0	0	0	1913	1203	42	4	55	4	C19orf21	19	756999	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		756999	58371984	108	329											
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1484101	1484101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCSK4	NM_017573	exon9	c.G1094A	p.C365Y	TCTGTGCACCCGT	.	128	71	68	0	.	90	T	1484101	C	T	1484101	3	4	3	1	0	0	0	0	1	0	0	0	11602	710	25	3	1201	3	PCSK4	19	1484101	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	727102	1484101	57644882	109	330											
ZNF57	126295	ucsc.edu;bcgsc.ca	37	19	2917541	2917541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ZNF57	NM_173480	exon4	c.T922A	p.Y308N	AAGCCCTATGAAT	.	41	4	107	0	.	71	A	2917541	T	A	2917541	3	1	3	1	0	0	0	0	1	0	0	0	17998	1522	53	4	936	4	ZNF57	19	2917541	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	1433440	2917541	56211442	110	331											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11143994	11143994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SMARCA4	NM_003072	exon26	c.G3575A	p.R1192H	CCCACCGCATCGG	.	77	15	90	0	.	1523	A	11143994	G	A	11143994	3	1	3	1	0	0	0	0	1	0	0	0	14770	1087	38	1	3673	1	SMARCA4	19	11143994	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	8226453	11143994	47984989	111	332											
TECR	9524	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14676612	14676612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TECR	NM_138501	exon13	c.C856A	p.H286N	GGCAAGCACCGCA	.	104	11	104	1	.	90	A	14676612	C	A	14676612	3	1	3	1	0	0	0	0	1	0	0	0	15742	710	25	3	906	3	TECR	19	14676612	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	3532618	14676612	44452371	112	333											
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41073984	41073984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SPTBN4	NM_020971	exon31	c.G6752A	p.R2251Q	CTGAGCGGCAAGA	.	50	15	41	0	.	94	A	41073984	G	A	41073984	3	1	3	1	0	0	0	0	1	0	0	0	15120	1116	39	1	6964	1	SPTBN4	19	41073984	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	26397372	41073984	18054999	113	334											
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43529064	43529064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_002785	exon2	c.G209A	p.G70E	ATTTGCCCTTTGT	.	203	27	250	0	.	.	T	43529064	C	T	43529064	3	4	3	1	0	0	0	0	1	0	0	0	12654	623	22	3	814	3	PSG11	19	43529064	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	2455080	43529064	15599919	114	335											
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43763032	43763032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PSG9	NM_002784	exon4	c.A965C	p.N322T	ACTGGGTTACTGC	.	124	29	96	0	.	92	G	43763032	T	G	43763032	3	3	3	1	0	0	0	0	1	0	0	0	12662	1725	60	5	327	5	PSG9	19	43763032	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	233968	43763032	15365951	115	336											
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49013717	49013717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	LMTK3	NM_001080434	exon3	c.A296C	p.K99T	CTCACCTTGAAGC	.	125	19	143	0	.	1357	G	49013717	T	G	49013717	3	3	3	1	0	0	0	0	1	0	0	0	8860	1623	56	5	4229	5	LMTK3	19	49013717	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	5250685	49013717	10115266	116	337											
PRR12	57479	broad.mit.edu;mdanderson.org	37	19	50124861	50124861	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRR12	NM_020719	exon11	c.G5703A	p.S1901S	GCTGTCGCTAAGC	.	31	5	26	0	.	70	A	50124861	G	A	50124861	2	1	3	1	0	0	0	0	0	0	0	1	12584	1074	38	1		1	PRR12	19	50124861	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	1111144	50124861	9004122	117	338											
MYBPC2	4606	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	50957533	50957533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYBPC2	NM_004533	exon18	c.C1921A	p.P641T	CCAGACCCCCCGG	.	74	15	59	1	.	67	A	50957533	C	A	50957533	3	1	3	1	0	0	0	0	1	0	0	0	10012	623	22	3	1991	3	MYBPC2	19	50957533	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	832672	50957533	8171450	118	339											
TFPT	29844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54611472	54611472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TFPT	NM_013342	exon5	c.C503T	p.P168L	CTGGGCGGGGACA	.	93	16	106	0	.	658	A	54611472	G	A	54611472	3	1	3	1	0	0	0	0	1	0	0	0	15807	1116	39	1	266	1	TFPT	19	54611472	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	3653939	54611472	4517511	119	340											
LILRB4	11006	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55175343	55175343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	LILRB4	NM_006847	exon3	c.C202G	p.P68A	CCAGCACCCTGGG	.	351	69	397	1	.	93	G	55175343	C	G	55175343	3	3	3	1	0	0	0	0	1	0	0	0	8793	507	18	4	212	4	LILRB4	19	55175343	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	563871	55175343	3953640	120	341											
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1629885	1629885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SIRPG	NM_001039508	exon2	c.A243C	p.K81N	GCCTTCTTTTTGA	.	816	294	1118	2	.	23	G	1629885	T	G	1629885	3	3	3	1	0	0	0	0	1	0	0	0	14336	1606	56	5	936	5	SIRPG	20	1629885	Missense_Mutation	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10		1629885	61395635	121	342											
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3735113	3735113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C20orf27	NM_001039140	exon5	c.G430A	p.E144K	GTATCTCCTCTTT	.	83	30	61	0	.	90	T	3735113	C	T	3735113	3	4	3	1	0	0	0	0	1	0	0	0	2107	864	30	3	177	3	C20orf27	20	3735113	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	2105228	3735113	59290407	122	343											
SLC17A9	63910	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61588131	61588131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SLC17A9	NM_022082	exon2	c.C74T	p.A25V	GCCAGGCATGGAC	.	28	9	47	0	.	92	T	61588131	C	T	61588131	3	4	3	1	0	0	0	0	1	0	0	0	14424	710	25	3	80	3	SLC17A9	20	61588131	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10	57853018	61588131	1437389	123	344											
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34022586	34022586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SYNJ1	NM_203446	exon23	c.G3062A	p.S1021N	TCTAAACTCATTT	.	237	77	406	0	.	232	T	34022586	C	T	34022586	3	4	3	1	0	0	0	0	1	0	0	0	15449	565	20	3	1841	3	SYNJ1	21	34022586	Missense_Mutation	SNP	C	TCGA-BC-A10R-01A-11D-A12Z-10		34022586	14107309	124	345											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18358243	18358243	+	Silent	SNP	G	G	A	rs201286172		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MICAL3	NM_001136004	exon19	c.C2475T	p.P825P	AGAGGCGGGGCGG	.	59	12	73	0	.	68	A	18358243	G	A	18358243	2	1	3	1	0	0	0	0	0	0	0	1	9571	1103	39	1		1	MICAL3	22	18358243	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		18358243	32946323	125	346											
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	42606748	42606748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TCF20	NM_181492	exon1	c.T4564A	p.S1522T	TCGGTGAAATCGT	.	323	22	352	0	.	95	T	42606748	A	T	42606748	3	4	3	1	0	0	0	0	1	0	0	0	15687	246	9	4	1356	4	TCF20	22	42606748	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	24248505	42606748	8697818	126	347											
SCML2	10389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18283818	18283818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SCML2	NM_006089	exon8	c.C835G	p.Q279E	TGACCTGCTGTGT	.	289	62	461	0	.	226	C	18283818	G	C	18283818	3	2	3	1	0	0	0	0	1	0	0	0	13910	1328	46	4	1299	4	SCML2	23	18283818	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10		18283818	136986742	127	348											
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	18972509	18972509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PHKA2	NM_000292	exon2	c.T100G	p.S34A	TGGCTGACAGCAG	.	60	14	95	0	.	131	C	18972509	A	C	18972509	3	2	3	1	0	0	0	0	1	0	0	0	11844	275	10	5	3735	5	PHKA2	23	18972509	Missense_Mutation	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	688691	18972509	136298051	128	349											
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31496394	31496394	+	Silent	SNP	G	G	A	rs149776669		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DMD	NM_004006	exon59	c.C8766T	p.S2922S	GTCAGCGGAGTGC	.	285	47	246	1	G|1.000;A|0.000	265	A	31496394	G	A	31496394	2	1	3	1	0	0	0	0	0	0	0	1	4580	1103	39	1		1	DMD	23	31496394	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	12523885	31496394	123774166	129	350											
PRICKLE3	4007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49032070	49032070	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRICKLE3	NM_006150	exon9	c.C1800T	p.R600R	CCCTGCGCGAGAG	.	94	19	102	0	.	193	A	49032070	G	A	49032070	2	1	3	1	0	0	0	0	0	0	0	1	12488	1074	38	1		1	PRICKLE3	23	49032070	Silent	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	17535676	49032070	106238490	130	351											
SSX7	280658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	52677345	52677345	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SSX7	NM_173358	exon6	c.A432G	p.K144K	ACTTGGTTTTCCT	.	1049	178	1399	1	.	91	C	52677345	T	C	52677345	2	2	3	1	0	0	0	0	0	0	0	1	15208	1722	60	2		2	SSX7	23	52677345	Silent	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	3645275	52677345	102593215	131	352											
KLF8	11279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	56291629	56291629	+	Missense_Mutation	SNP	G	G	A	rs144407506		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KLF8	NM_001159296	exon4	c.G98A	p.R33Q	CTGTTCGGAACAG	.	108	17	175	0	G|1.000;A|0.000	131	A	56291629	G	A	56291629	3	1	3	1	0	0	0	0	1	0	0	0	8352	1116	39	1	108	1	KLF8	23	56291629	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	3614284	56291629	98978931	132	353											
FAM133A	286499	broad.mit.edu;bcgsc.ca	37	X	92965114	92965114	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAM133A	NM_173698	exon4	c.A696G	p.K232K	CAAGAAACATAGT	.	91	4	238	0	.	130	G	92965114	A	G	92965114	2	3	3	1	0	0	0	0	0	0	0	1	5443	40	2	2		2	FAM133A	23	92965114	Silent	SNP	A	TCGA-BC-A10R-01A-11D-A12Z-10	36673485	92965114	62305446	133	354											
PCDH19	57526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99658623	99658623	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDH19	NM_001184880	exon2	c.A2187T	p.I729I	TCCTTTTATAAAA	.	169	42	278	1	.	110	A	99658623	T	A	99658623	2	1	3	1	0	0	0	0	0	0	0	1	11514	1744	61	4		4	PCDH19	23	99658623	Silent	SNP	T	TCGA-BC-A10R-01A-11D-A12Z-10	6693509	99658623	55611937	134	355											
ABCD1	215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153001604	153001604	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ABCD1	NM_000033	exon3	c.G1120C	p.E374Q	AAGAAGGAGGAGG	.	129	29	193	0	.	130	C	153001604	G	C	153001604	3	2	3	1	0	0	0	0	1	0	0	0	60	1175	41	4	1130	4	ABCD1	23	153001604	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	53342981	153001604	2268956	135	356											
FLNA	2316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153595782	153595782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FLNA	NM_001456	exon5	c.C851T	p.A284V	GCACGGGCTTTCT	.	35	9	60	0	.	599	A	153595782	G	A	153595782	3	1	3	1	0	0	0	0	1	0	0	0	5933	1203	42	3	7268	3	FLNA	23	153595782	Missense_Mutation	SNP	G	TCGA-BC-A10R-01A-11D-A12Z-10	594178	153595782	1674778	136	357											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34174693	34174693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CSMD2	NM_052896	exon22	c.T3452A	p.L1151H	ACCTTGAGGACAT	.	190	60	61	0	.	103	T	34174693	A	T	34174693	3	4	4	1	0	0	0	0	1	0	0	0	3945	304	11	4	7203	4	CSMD2	1	34174693	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10		34174693	215075928	1	358											
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47603268	47603268	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CYP4A22	NM_001010969	exon1	c.C111A	p.L37L	TCAGCTCTACCTG	.	200	54	66	0	.	139	A	47603268	C	A	47603268	2	1	4	1	0	0	0	0	0	0	0	1	4184	900	32	3		3	CYP4A22	1	47603268	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	13428575	47603268	201647353	2	359											
FGGY	55277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60223658	60223658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	FGGY	NM_001113411	exon16	c.A1640G	p.D547G	TACAGGATAAAAA	.	97	39	45	0	.	69	G	60223658	A	G	60223658	3	3	4	1	0	0	0	0	1	0	0	0	5871	333	12	2	1698	2	FGGY	1	60223658	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	12620390	60223658	189026963	3	360											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79385992	79385992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ELTD1	NM_022159	exon10	c.T1337C	p.I446T	GTAAAAATGCATA	.	125	50	40	0	.	24	G	79385992	A	G	79385992	3	3	4	1	0	0	0	0	1	0	0	0	5084	101	4	2	759	2	ELTD1	1	79385992	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	19162334	79385992	169864629	4	361											
ZNHIT6	54680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	86173940	86173940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ZNHIT6	NM_017953	exon1	c.A28C	p.K10Q	CAGACTTCCCTTC	.	56	16	39	0	.	153	G	86173940	T	G	86173940	3	3	4	1	0	0	0	0	1	0	0	0	18206	1792	62	5	1424	5	ZNHIT6	1	86173940	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	6787948	86173940	163076681	5	362											
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91977431	91977431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CDC7	NM_001134419	exon6	c.C523A	p.H175N	ATTGTTCACCGTG	.	465	156	228	0	.	1125	A	91977431	C	A	91977431	3	1	4	1	0	0	0	0	1	0	0	0	3084	826	29	3	541	3	CDC7	1	91977431	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	5803491	91977431	157273190	6	363											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150532349	150532349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ADAMTSL4	NM_019032	exon18	c.C3056T	p.P1019L	AGCGCCCCTGTAA	.	50	22	22	0	.	92	T	150532349	C	T	150532349	3	4	4	1	0	0	0	0	1	0	0	0	277	623	22	3	3193	3	ADAMTSL4	1	150532349	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	58554918	150532349	98718272	7	364											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228462084	228462084	+	Silent	SNP	C	C	T	rs202200633		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	OBSCN	NM_001271223	exon23	c.C6747T	p.D2249D	AGAGGACGCAGGG	.	127	56	86	0	C|0.996;T|0.004	403	T	228462084	C	T	228462084	2	4	4	1	0	0	0	0	0	0	0	1	10812	535	19	1		1	OBSCN	1	228462084	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	77929735	228462084	20788537	8	365											
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247615077	247615077	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	OR2B11	NM_001004492	exon1	c.208delC	p.L70fs	AGGACAGGTGACT	.	223	46	75	0	.	69	-	247615077	G	-	247615077	7	5	4	1	0	1	0	1	0	0	0	0	10988	991	35	0	748	0	OR2B11	1	247615077	Frame_Shift_Del	DEL	G	TCGA-BC-A10T-01A-11D-A12Z-10	19152993	247615077	1635544	9	366											
MFSD2B	388931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24240356	24240356	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MFSD2B	NM_001080473	exon6	c.G579A	p.L193L	AACACTGATGGGG	.	127	26	59	0	.	24	A	24240356	G	A	24240356	2	1	4	1	0	0	0	0	0	0	0	1	9531	1277	45	3		3	MFSD2B	2	24240356	Silent	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		24240356	218959017	10	367											
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656836	40656836	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SLC8A1	NM_001252624	exon1	c.A585C	p.T195T	CTTCCTTGTCTCT	.	189	94	71	0	.	93	G	40656836	T	G	40656836	2	3	4	1	0	0	0	0	0	0	0	1	14706	1799	63	5		5	SLC8A1	2	40656836	Silent	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	16416480	40656836	202542537	11	368											
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	43819171	43819171	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	THADA	NM_001083953	exon3	c.G91T	p.E31X	TCCCTTCCACATC	.	297	179	101	0	.	228	A	43819171	C	A	43819171	4	1	4	1	0	0	0	0	0	1	0	0	15837	864	30	3	5914	3	THADA	2	43819171	Nonsense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	3162335	43819171	199380202	12	369											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61415443	61415443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	USP34	NM_014709	exon80	c.G10435C	p.D3479H	CTAAGTCAGACAG	.	149	83	55	0	.	579	G	61415443	C	G	61415443	3	3	4	1	0	0	0	0	1	0	0	0	17062	826	29	4	209	4	USP34	2	61415443	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	17596272	61415443	181783930	13	370											
ADD2	119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70923474	70923474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ADD2	NM_001185055	exon4	c.T425A	p.L142Q	TTGGCCAGGTTCA	.	412	111	56	0	.	93	T	70923474	A	T	70923474	3	4	4	1	0	0	0	0	1	0	0	0	305	188	7	4	2032	4	ADD2	2	70923474	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	9508031	70923474	172275899	14	371											
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72727062	72727062	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	EXOC6B	NM_015189	exon12	c.A1207T	p.N403Y	TGAGGTTCTTCAA	.	435	128	223	0	.	68	A	72727062	T	A	72727062	3	1	4	1	0	0	0	0	1	0	0	0	5309	1783	62	4	1272	4	EXOC6B	2	72727062	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	1803588	72727062	170472311	15	372											
TMEM127	55654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	96919804	96919804	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	TMEM127	NM_001193304	exon4	c.C459T	p.L153L	CAAGATGAGTTCA	.	129	11	55	0	.	90	A	96919804	G	A	96919804	2	1	4	1	0	0	0	0	0	0	0	1	16037	1277	45	3		3	TMEM127	2	96919804	Silent	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	24192742	96919804	146279569	16	373											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141260598	141260598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	LRP1B	NM_018557	exon54	c.G8596A	p.D2866N	CTCCATCACACTG	.	289	96	111	0	.	311	T	141260598	C	T	141260598	3	4	4	1	0	0	0	0	1	0	0	0	8955	826	29	3	5355	3	LRP1B	2	141260598	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	44340794	141260598	101938775	17	374											
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	223163313	223163313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PAX3	NM_181457	exon1	c.G22T	p.V8L	TGGGCACAGCGCC	.	96	30	44	0	.	1821	A	223163313	C	A	223163313	3	1	4	1	0	0	0	0	1	0	0	0	11480	478	17	3	1664	3	PAX3	2	223163313	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	81902715	223163313	20036060	18	375											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238263564	238263564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	COL6A3	NM_004369	exon24	c.G6605A	p.R2202Q	CCCCTTCGGCCAA	.	66	23	15	0	.	526	T	238263564	C	T	238263564	3	4	4	1	0	0	0	0	1	0	0	0	3701	884	31	1	3012	1	COL6A3	2	238263564	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	15100251	238263564	4935809	19	376											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	96706230	96706230	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	EPHA6	NM_001080448	exon3	c.A507T	p.V169V	CCAGGTATGTAAT	.	170	59	60	0	.	1561	T	96706230	A	T	96706230	2	4	4	1	0	0	0	0	0	0	0	1	5171	436	16	4		4	EPHA6	3	96706230	Silent	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10		96706230	101316200	20	377											
TM4SF18	116441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149051080	149051080	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	TM4SF18	NM_001184723	exon1	c.C90T	p.F30F	ATTCGGGAAATAC	.	375	107	87	0	.	69	A	149051080	G	A	149051080	2	1	4	1	0	0	0	0	0	0	0	1	15964	1165	41	3		3	TM4SF18	3	149051080	Silent	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	52344850	149051080	48971350	21	378											
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110447421	110447421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SEC24B	NM_006323	exon17	c.G2831A	p.R944H	TTGTCCGTTCTAC	.	276	19	162	0	.	137	A	110447421	G	A	110447421	3	1	4	1	0	0	0	0	1	0	0	0	13995	1145	40	1	2897	1	SEC24B	4	110447421	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		110447421	80706855	22	379											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55247872	55247872	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	IL6ST	NM_002184	exon13	c.A1584G	p.K528K	TACTTTTTTTGTC	.	389	122	123	0	.	290	C	55247872	T	C	55247872	2	2	4	1	0	0	0	0	0	0	0	1	7703	1838	64	2		2	IL6ST	5	55247872	Silent	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10		55247872	125667388	23	380											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128977592	128977592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ADAMTS19	NM_133638	exon11	c.A1793T	p.E598V	AAGGTGAGAAAGA	.	324	94	110	0	.	295	T	128977592	A	T	128977592	3	4	4	1	0	0	0	0	1	0	0	0	264	304	11	4	1835	4	ADAMTS19	5	128977592	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	73729720	128977592	51937668	24	381											
CCNJL	79616	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159682609	159682609	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CCNJL	NM_024565	exon6	c.G834A	p.R278R	TGAGATCCTCTGC	.	334	90	90	1	.	90	T	159682609	C	T	159682609	2	4	4	1	0	0	0	0	0	0	0	1	2929	854	30	3		3	CCNJL	5	159682609	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	30705017	159682609	21232651	25	382											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152676100	152676100	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SYNE1	NM_033071	exon67	c.A10641G	p.V3547V	ACAGTGTACCTGT	.	73	31	26	0	.	607	C	152676100	T	C	152676100	2	2	4	1	0	0	0	0	0	0	0	1	15442	1625	57	2		2	SYNE1	6	152676100	Silent	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10		152676100	18438967	26	383											
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154331688	154331688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	OPRM1	NM_001145281	exon1	c.C41T	p.P14L	GGAAGCCCTCCAG	.	115	31	47	0	.	69	T	154331688	C	T	154331688	3	4	4	1	0	0	0	0	1	0	0	0	10887	623	22	3	43	3	OPRM1	6	154331688	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	1655588	154331688	16783379	27	384											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4009044	4009044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SDK1	NM_152744	exon11	c.C1702T	p.L568F	GCCACGCTCACTG	.	74	31	30	0	.	138	T	4009044	C	T	4009044	3	4	4	1	0	0	0	0	1	0	0	0	13968	797	28	3	1744	3	SDK1	7	4009044	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10		4009044	155129619	28	385											
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87179344	87179344	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ABCB1	NM_000927	exon14	c.G1377A	p.R459R	TATGGTCCTAATA	.	193	44	46	0	.	582	T	87179344	C	T	87179344	2	4	4	1	0	0	0	0	0	0	0	1	40	854	30	3		3	ABCB1	7	87179344	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	83170300	87179344	71959319	29	386											
C7orf63	79846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89938655	89938655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	C7orf63	NM_001039706	exon22	c.A2629G	p.T877A	CACCAAACACATA	.	440	167	290	0	.	91	G	89938655	A	G	89938655	3	3	4	1	0	0	0	0	1	0	0	0	2409	43	2	2	2715	2	C7orf63	7	89938655	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	2759311	89938655	69200008	30	387											
NAA38	51691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117828373	117828373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	NAA38	NM_016200	exon3	c.G114T	p.L38F	GATTTTGGATGAA	.	161	53	99	0	.	90	T	117828373	G	T	117828373	3	4	4	1	0	0	0	0	1	0	0	0	10124	1339	47	3	124	3	NAA38	7	117828373	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	27889718	117828373	41310290	31	388											
C7orf49	78996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134852549	134852550	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	.	.	.	.	p.T50S	TCCTTGTCGCAGG	.	125	47	66	0	.	.	AA	134852550	TC	AA	134852549	3	1	4	1	0	0	0	0	1	0	0	0	2398	1667	58	4	333	4	C7orf49	7	134852549	Missense_Mutation	DNP	TC	TCGA-BC-A10T-01A-11D-A12Z-10	17024176	134852549	24286114	32	389											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	151833918	151833918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MLL3	NM_170606	exon59	c.G14735T	p.X4912L	GCATTTCAGTTCA	.	55	15	13	0	.	1398	A	151833918	C	A	151833918	3	1	4	1	0	0	0	0	1	0	0	0	9622	837	29	3	4	3	MLL3	7	151833918	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	16981369	151833918	7304745	33	390											
PSD3	23362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	18730127	18730127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PSD3	NM_015310	exon3	c.G247C	p.A83P	GCAGAGCCTCACC	.	77	46	61	1	.	93	G	18730127	C	G	18730127	3	3	4	1	0	0	0	0	1	0	0	0	12648	739	26	4	2988	4	PSD3	8	18730127	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10		18730127	127633895	34	391											
PTK2B	2185	ucsc.edu;bcgsc.ca	37	8	27288457	27288457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PTK2B	NM_173174	exon13	c.A734G	p.E245G	AGGAGGAGTGCGT	.	39	4	43	0	.	1378	G	27288457	A	G	27288457	3	3	4	1	0	0	0	0	1	0	0	0	12763	304	11	2	760	2	PTK2B	8	27288457	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	8558330	27288457	119075565	35	392											
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42587132	42587132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CHRNB3	NM_000749	exon5	c.G682A	p.V228I	TCCTTCGTCCTGA	.	211	73	131	0	.	91	A	42587132	G	A	42587132	3	1	4	1	0	0	0	0	1	0	0	0	3392	1145	40	1	700	1	CHRNB3	8	42587132	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	15298675	42587132	103776890	36	393											
ZNF572	137209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125987939	125987939	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ZNF572	NM_152412	exon2	c.G57A	p.E19E	GAGGGAGAGTTTG	.	278	64	108	0	.	154	A	125987939	G	A	125987939	2	1	4	1	0	0	0	0	0	0	0	1	18001	933	33	3		3	ZNF572	8	125987939	Silent	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	83400807	125987939	20376083	37	394											
SLC39A4	55630	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145639418	145639418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SLC39A4	NM_130849	exon7	c.T1211A	p.L404Q	ATAGCCAGGAGGC	.	159	50	55	1	.	90	T	145639418	A	T	145639418	3	4	4	1	0	0	0	0	1	0	0	0	14620	188	7	4	756	4	SLC39A4	8	145639418	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	19651479	145639418	724604	38	395											
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36630338	36630338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MELK	NM_014791	exon9	c.A709G	p.I237V	AGTAGCATTCTGC	.	118	41	56	0	.	760	G	36630338	A	G	36630338	3	3	4	1	0	0	0	0	1	0	0	0	9470	217	8	2	739	2	MELK	9	36630338	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10		36630338	104583093	39	396											
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119115996	119115996	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PAPPA	NM_002581	exon17	c.G4271C	p.G1424A	TCCATGGGCTCTA	.	276	102	118	0	.	77	C	119115996	G	C	119115996	3	2	4	1	0	0	0	0	1	0	0	0	11432	1232	43	4	4337	4	PAPPA	9	119115996	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	82485658	119115996	22097435	40	397											
MPP7	143098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	28420525	28420525	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MPP7	NM_173496	exon8	c.A411G	p.V137V	TATTTTTACTGAG	.	225	82	73	0	.	45	C	28420525	T	C	28420525	2	2	4	1	0	0	0	0	0	0	0	1	9739	1741	61	2		2	MPP7	10	28420525	Silent	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10		28420525	107114222	41	398											
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97916784	97916784	+	RNA	SNP	G	G	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ZNF518A	.	.	.	.	TTATAAGTGTGGT	.	203	66	98	0	.	23	T	97916784	G	T	97916784	1	4	4	0	1	0	0	0	0	0	0	0	17959	1020	36	3		3	ZNF518A	10	97916784	RNA	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	69496259	97916784	37617963	42	399											
OPALIN	93377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98108095	98108095	+	Missense_Mutation	SNP	T	T	C	rs113141694		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	OPALIN	NM_033207	exon5	c.A200G	p.D67G	GGTCTGTCACTTT	.	93	23	37	0	T|0.500;C|0.500	68	C	98108095	T	C	98108095	3	2	4	1	0	0	0	0	1	0	0	0	10873	1667	58	2	233	2	OPALIN	10	98108095	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	191311	98108095	37426652	43	400											
HPS6	79803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103825804	103825804	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	HPS6	NM_024747	exon1	c.C573T	p.F191F	TGCCTTCGGGCTG	.	28	9	18	0	.	90	T	103825804	C	T	103825804	2	4	4	1	0	0	0	0	0	0	0	1	7343	883	31	1		1	HPS6	10	103825804	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	5717709	103825804	31708943	44	401											
OR8I2	120586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55861148	55861148	+	Missense_Mutation	SNP	G	G	T	rs148027692	alternate_allele	TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	OR8I2	NM_001003750	exon1	c.G365T	p.R122L	ACAATCGCTACAT	.	175	58	80	1	G|1.000;A|0.000	113	T	55861148	G	T	55861148	3	4	4	1	0	0	0	0	1	0	0	0	11240	1087	38	1	367	1	OR8I2	11	55861148	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		55861148	79145368	45	402											
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66206166	66206166	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MRPL11	NM_170739	exon1	c.C60A	p.I20I	CGCCCGGATCACA	.	81	24	67	0	.	90	T	66206166	G	T	66206166	2	4	4	1	0	0	0	0	0	0	0	1	9776	1164	41	3		3	MRPL11	11	66206166	Silent	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	10345018	66206166	68800350	46	403											
SSH3	54961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67075197	67075197	+	Silent	SNP	C	C	T	rs79688961	byfrequency	TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SSH3	NM_017857	exon7	c.C780T	p.A260A	CAGCGCCGAGCCT	.	118	42	47	0	C|0.999;T|0.001	91	T	67075197	C	T	67075197	2	4	4	1	0	0	0	0	0	0	0	1	15185	639	23	1		1	SSH3	11	67075197	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	869031	67075197	67931319	47	404											
CABP4	57010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67223230	67223230	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CABP4	NM_145200	exon1	c.C336T	p.Y112Y	GACATACGGGCCC	.	75	33	38	0	.	90	T	67223230	C	T	67223230	2	4	4	1	0	0	0	0	0	0	0	1	2533	547	19	1		1	CABP4	11	67223230	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	148033	67223230	67783286	48	405											
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103797732	103797732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PDGFD	NM_025208	exon6	c.G895A	p.V299M	GCTGCACGAGGAG	.	137	51	61	0	.	723	T	103797732	C	T	103797732	3	4	4	1	0	0	0	0	1	0	0	0	11660	536	19	1	225	1	PDGFD	11	103797732	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	36574502	103797732	31208784	49	406											
PKNOX2	63876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125237753	125237753	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PKNOX2	NM_022062	exon5	c.C99T	p.T33T	GGCAACCGCCCAG	.	156	53	73	0	.	93	T	125237753	C	T	125237753	2	4	4	1	0	0	0	0	0	0	0	1	11983	639	23	1		1	PKNOX2	11	125237753	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	21440021	125237753	9768763	50	407											
LAG3	3902	broad.mit.edu;bcgsc.ca	37	12	6884573	6884573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	LAG3	NM_002286	exon5	c.G916A	p.D306N	GGCCCTGACCTCC	.	157	10	92	0	.	90	A	6884573	G	A	6884573	3	1	4	1	0	0	0	0	1	0	0	0	8600	1290	45	3	934	3	LAG3	12	6884573	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		6884573	126967322	51	408											
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20833113	20833113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PDE3A	NM_000921	exon16	c.T3334A	p.S1112T	TCGCACTCTTCAG	.	402	87	203	0	.	94	A	20833113	T	A	20833113	3	1	4	1	0	0	0	0	1	0	0	0	11637	1551	54	4	3396	4	PDE3A	12	20833113	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	13948540	20833113	113018782	52	409											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56087102	56087102	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ITGA7	NM_001144996	exon21	c.2548-1G>A	.	GGAAACCTGTGGG	.	101	24	29	0	.	229	T	56087102	C	T	56087102	5	4	4	1	0	0	0	0	0	0	1	0	7881	695	24	3	902	3	ITGA7	12	56087102	Splice_Site	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	35253989	56087102	77764793	53	410											
MMP19	4327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56230959	56230959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MMP19	NM_002429	exon9	c.G1388T	p.R463I	ATATTTCTGGGAT	.	554	291	160	1	.	227	A	56230959	C	A	56230959	3	1	4	1	0	0	0	0	1	0	0	0	9657	913	32	3	142	3	MMP19	12	56230959	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	143857	56230959	77620936	54	411											
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56332338	56332338	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	DGKA	NM_201554	exon6	c.C393T	p.D131D	CCTGGACAGCTCA	.	413	105	133	0	.	255	T	56332338	C	T	56332338	2	4	4	1	0	0	0	0	0	0	0	1	4465	477	17	3		3	DGKA	12	56332338	Silent	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	101379	56332338	77519557	55	412											
C12orf50	160419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	88420359	88420359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	C12orf50	NM_152589	exon3	c.G39T	p.W13C	AGTTTCCCAGAAG	.	178	10	51	0	.	93	A	88420359	C	A	88420359	3	1	4	1	0	0	0	0	1	0	0	0	1695	624	22	3	1249	3	C12orf50	12	88420359	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	32088021	88420359	45431536	56	413											
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94706794	94706794	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CCDC41	NM_016122	exon16	c.1708-1G>A	.	TTTTCTCTAAAAA	.	289	150	104	0	.	90	T	94706794	C	T	94706794	5	4	4	1	0	0	0	0	0	0	1	0	2813	927	32	3	410	3	CCDC41	12	94706794	Splice_Site	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	6286435	94706794	39145101	57	414											
NT5DC3	51559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104208729	104208729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	NT5DC3	NM_001031701	exon2	c.A379G	p.I127V	CATTGATGAGAAG	.	530	288	158	0	.	228	C	104208729	T	C	104208729	3	2	4	1	0	0	0	0	1	0	0	0	10692	1464	51	2	1319	2	NT5DC3	12	104208729	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	9501935	104208729	29643166	58	415											
UNG	7374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109540669	109540669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	UNG	NM_080911	exon5	c.T559C	p.S187P	GAGTTGTCTACAG	.	187	49	59	0	.	1083	C	109540669	T	C	109540669	3	2	4	1	0	0	0	0	1	0	0	0	16996	1667	58	2	682	2	UNG	12	109540669	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	5331940	109540669	24311226	59	416											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48057214	48057214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SEMA6D	NM_153617	exon13	c.G1388T	p.S463I	ACGACAGCGTATT	.	109	30	46	0	.	138	T	48057214	G	T	48057214	3	4	4	1	0	0	0	0	1	0	0	0	14042	971	34	3	1434	3	SEMA6D	15	48057214	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		48057214	54474178	60	417											
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	52357196	52357196	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MAPK6	NM_002748	exon6	c.A2165G	p.X722X	TGAACTAAAACAC	.	279	110	170	0	.	1403	G	52357196	A	G	52357196	2	3	4	1	0	0	0	0	0	0	0	1	9281	369	13	2		2	MAPK6	15	52357196	Silent	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	4299982	52357196	50174196	61	418											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54435882	54435882	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	UNC13C	NM_001080534	exon3	c.3071+1G>A	.	TGGTGGGTAAGTA	.	224	67	72	0	.	51	A	54435882	G	A	54435882	5	1	4	1	0	0	0	0	0	0	1	0	16983	1275	44	3	3082	3	UNC13C	15	54435882	Splice_Site	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	2078686	54435882	48095510	62	419											
ODF3L1	161753	ucsc.edu;bcgsc.ca	37	15	76019647	76019647	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ODF3L1	NM_175881	exon4	c.A591G	p.G197G	GGCAGGAGGCCCT	.	70	19	31	1	.	68	G	76019647	A	G	76019647	2	3	4	1	0	0	0	0	0	0	0	1	10831	291	11	2		2	ODF3L1	15	76019647	Silent	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	21583765	76019647	26511745	63	420											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77087747	77087747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SCAPER	NM_020843	exon7	c.G646A	p.A216T	TGGGAGCCAGACG	.	113	34	87	0	.	137	T	77087747	C	T	77087747	3	4	4	1	0	0	0	0	1	0	0	0	13878	739	26	3	3694	3	SCAPER	15	77087747	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	1068100	77087747	25443645	64	421											
MFGE8	4240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89450543	89450543	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MFGE8	NM_001114614	exon3	c.T270G	p.S90S	ACGCACAGACGAG	.	186	56	93	0	.	91	C	89450543	A	C	89450543	2	2	4	1	0	0	0	0	0	0	0	1	9520	175	7	5		5	MFGE8	15	89450543	Silent	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	12362796	89450543	13080849	65	422											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	101592005	101592005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	LRRK1	NM_024652	exon24	c.G3529A	p.D1177N	CACACGGACCCCA	.	200	12	74	0	.	602	A	101592005	G	A	101592005	3	1	4	1	0	0	0	0	1	0	0	0	9032	1174	41	3	3619	3	LRRK1	15	101592005	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	12141462	101592005	939387	66	423											
PHF23	79142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7139869	7139869	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	PHF23	NM_024297	exon4	c.C377G	p.T126S	AGCAAGGTAGCAC	.	137	37	66	0	.	90	C	7139869	G	C	7139869	3	2	4	1	0	0	0	0	1	0	0	0	11835	1261	44	4	842	4	PHF23	17	7139869	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		7139869	74055341	67	424											
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58539193	58539193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	APPBP2	NM_006380	exon8	c.G914T	p.C305F	GACTGACAGATAT	.	312	124	162	0	.	226	A	58539193	C	A	58539193	3	1	4	1	0	0	0	0	1	0	0	0	816	478	17	3	867	3	APPBP2	17	58539193	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	51399324	58539193	22656017	68	425											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65889635	65889635	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	BPTF	NM_004459	exon8	c.T2583G	p.A861A	ATTTGCTTTGAAT	.	852	331	454	0	.	94	G	65889635	T	G	65889635	2	3	4	1	0	0	0	0	0	0	0	1	1495	1596	56	5		5	BPTF	17	65889635	Silent	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	7350442	65889635	15305575	69	426											
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74387574	74387574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	UBE2O	NM_022066	exon18	c.A3329T	p.Q1110L	ATGGACTGCACCA	.	178	40	82	0	.	272	A	74387574	T	A	74387574	3	1	4	1	0	0	0	0	1	0	0	0	16865	1580	55	4	553	4	UBE2O	17	74387574	Missense_Mutation	SNP	T	TCGA-BC-A10T-01A-11D-A12Z-10	8497939	74387574	6807636	70	427											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78328292	78328292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	RNF213	NM_001256071	exon36	c.A10778G	p.Q3593R	AGAAGCAAGAAGA	.	90	22	27	0	.	577	G	78328292	A	G	78328292	3	3	4	1	0	0	0	0	1	0	0	0	13477	130	5	2	11235	2	RNF213	17	78328292	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	3940718	78328292	2866918	71	428											
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56651549	56651549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ZNF532	NM_018181	exon11	c.G3757A	p.E1253K	AGCCACGAGGATG	.	232	84	125	0	.	154	A	56651549	G	A	56651549	3	1	4	1	0	0	0	0	1	0	0	0	17969	1059	37	1	3787	1	ZNF532	18	56651549	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		56651549	21425699	72	429											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63511096	63511096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CDH7	NM_004361	exon7	c.G1030T	p.A344S	GAAGCTGCAAATA	.	249	97	99	0	.	94	T	63511096	G	T	63511096	3	4	4	1	0	0	0	0	1	0	0	0	3115	1319	46	3	1052	3	CDH7	18	63511096	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	6859547	63511096	14566152	73	430											
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44997586	44997586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ELMO2	NM_182764	exon20	c.T1906A	p.S636T	GGATGGAGAAGGC	.	149	49	63	0	.	91	T	44997586	A	T	44997586	3	4	4	1	0	0	0	0	1	0	0	0	5066	304	11	4	264	4	ELMO2	20	44997586	Missense_Mutation	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10		44997586	18027934	74	431											
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62178615	62178615	+	Missense_Mutation	SNP	C	C	T	rs149894938		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SRMS	NM_080823	exon1	c.G202A	p.G68R	GCTCCCCGCCACA	.	49	18	34	0	C|1.000;T|0.000	521	T	62178615	C	T	62178615	3	4	4	1	0	0	0	0	1	0	0	0	15151	652	23	1	1296	1	SRMS	20	62178615	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10	17181029	62178615	846905	75	432											
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33340695	33340695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	HUNK	NM_014586	exon6	c.C1008A	p.N336K	TCCCAACAGGTAA	.	90	28	56	0	.	334	A	33340695	C	A	33340695	3	1	4	1	0	0	0	0	1	0	0	0	7458	477	17	3	1030	3	HUNK	21	33340695	Missense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10		33340695	14789200	76	433											
POFUT2	23275	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46707671	46707671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	POFUT2	NM_015227	exon1	c.C116T	p.A39V	GAAGCCGCCCCCG	.	54	21	30	0	.	90	A	46707671	G	A	46707671	3	1	4	1	0	0	0	0	1	0	0	0	12184	1087	38	1	1348	1	POFUT2	21	46707671	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	13366976	46707671	1422224	77	434											
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	32188763	32188763	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	DEPDC5	NM_001242897	exon12	c.C727T	p.R243X	TCAATTCGACAGG	.	125	64	81	0	.	519	T	32188763	C	T	32188763	4	4	4	1	0	0	0	0	0	1	0	0	4442	876	31	1	769	1	DEPDC5	22	32188763	Nonsense_Mutation	SNP	C	TCGA-BC-A10T-01A-11D-A12Z-10		32188763	19115803	78	435											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46931320	46931320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	CELSR1	NM_014246	exon1	c.C1748A	p.P583H	ACCACGGGGTAGC	.	21	14	35	0	.	525	T	46931320	G	T	46931320	3	4	4	1	0	0	0	0	1	0	0	0	3221	1232	43	3	7436	3	CELSR1	22	46931320	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	14742557	46931320	4373246	79	436											
SNX12	29934	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70281775	70281775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	SNX12	NM_001256185	exon4	c.C304G	p.L102V	AAGGGAGCTGCCG	.	96	36	58	1	.	226	C	70281775	G	C	70281775	3	2	4	1	0	0	0	0	1	0	0	0	14883	971	34	4	192	4	SNX12	23	70281775	Missense_Mutation	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10		70281775	84988785	80	437											
ARMCX6	54470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100871412	100871412	+	Silent	SNP	G	G	T	rs138992392	alternate_allele	TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	ARMCX6	NM_001184768	exon4	c.C199A	p.R67R	AGGGCCGAGCCAT	.	124	102	61	0	G|1.000;A|0.000	130	T	100871412	G	T	100871412	2	4	4	1	0	0	0	0	0	0	0	1	963	1057	37	1		1	ARMCX6	23	100871412	Silent	SNP	G	TCGA-BC-A10T-01A-11D-A12Z-10	30589637	100871412	54399148	81	438											
MID2	11043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107169328	107169328	+	Silent	SNP	A	A	G	rs150570766	byfrequency	TCGA-BC-A10T-01A-11D-A12Z-10	TCGA-BC-A10T-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f755c284-603b-4eac-93b5-5d67fbd723da	ce57ada9-1bc1-4997-8890-8c7eca99c411	.	MID2	NM_012216	exon9	c.A1602G	p.Q534Q	AGGCCAACCCTTT	.	134	92	72	0	A|0.995;G|0.005	227	G	107169328	A	G	107169328	2	3	4	1	0	0	0	0	0	0	0	1	9578	40	2	2		2	MID2	23	107169328	Silent	SNP	A	TCGA-BC-A10T-01A-11D-A12Z-10	6297916	107169328	48101232	82	439											
UBR4	23352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19511591	19511591	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	UBR4	NM_020765	exon16	c.1938+2T>C	.	ACTCTTACCAACT	.	97	45	63	1	.	612	G	19511591	A	G	19511591	5	3	5	1	0	0	0	0	0	0	1	0	16901	405	14	2	13979	2	UBR4	1	19511591	Splice_Site	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		19511591	229739030	1	440											
ZNF436	80818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23689653	23689653	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF436	NM_001077195	exon4	c.A222G	p.Q74Q	CCCAAATTGTACA	.	279	121	120	0	.	153	C	23689653	T	C	23689653	2	2	5	1	0	0	0	0	0	0	0	1	17906	1490	52	2		2	ZNF436	1	23689653	Silent	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	4178062	23689653	225560968	2	441											
SFPQ	6421	hgsc.bcm.edu;bcgsc.ca	37	1	35654866	35654867	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SFPQ	NM_005066	exon5	c.1533_1534insA	p.N511fs	TTTCATGTTTTTT	.	710	262	262	0	.	231	T	35654867	-	T	35654866	7	5	5	1	0	1	1	0	0	0	0	0	14160	1368	48	0	614	0	SFPQ	1	35654866	Frame_Shift_Ins	INS	-	TCGA-BC-A10U-01A-11D-A12Z-10	11965213	35654866	213595755	3	442											
SLC1A7	6512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53555552	53555552	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SLC1A7	NM_006671	exon9	c.C1281G	p.L427L	GGTGACGAGGCCG	.	173	76	90	0	.	155	C	53555552	G	C	53555552	2	2	5	1	0	0	0	0	0	0	0	1	14437	1045	37	4		4	SLC1A7	1	53555552	Silent	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	17900686	53555552	195695069	4	443											
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	107937923	107937923	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NTNG1	NM_014917	exon4	c.C1035T	p.P345P	TCTCCCCATCCCC	.	125	54	48	0	.	140	T	107937923	C	T	107937923	2	4	5	1	0	0	0	0	0	0	0	1	10704	581	21	3		3	NTNG1	1	107937923	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	54382371	107937923	141312698	5	444											
FCRL2	79368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157739786	157739786	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	FCRL2	NM_030764	exon4	c.C465T	p.G155G	GCTCCAGCCTGAC	.	392	223	94	0	.	92	A	157739786	G	A	157739786	2	1	5	1	0	0	0	0	0	0	0	1	5795	958	34	3		3	FCRL2	1	157739786	Silent	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	49801863	157739786	91510835	6	445											
COPA	1314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160295377	160295377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	COPA	NM_001098398	exon7	c.G562A	p.D188N	ATAGATCAACCCC	.	287	176	95	1	.	92	T	160295377	C	T	160295377	3	4	5	1	0	0	0	0	1	0	0	0	3727	826	29	3	3247	3	COPA	1	160295377	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	2555591	160295377	88955244	7	446											
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168014320	168014320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	DCAF6	NM_001198956	exon16	c.G2113C	p.E705Q	AATCCTGAGCCTC	.	389	225	134	0	.	516	C	168014320	G	C	168014320	3	2	5	1	0	0	0	0	1	0	0	0	4274	1291	45	4	2000	4	DCAF6	1	168014320	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	7718943	168014320	81236301	8	447											
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183093943	183093943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	LAMC1	NM_002293	exon14	c.A2579G	p.Y860C	GCTTCTATTGTGA	.	221	48	77	0	.	252	G	183093943	A	G	183093943	3	3	5	1	0	0	0	0	1	0	0	0	8614	449	16	2	2633	2	LAMC1	1	183093943	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	15079623	183093943	66156678	9	448											
RABIF	5877	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202858125	202858125	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	RABIF	NM_002871	exon1	c.G102C	p.G34G	AGCGGTCCCTGGC	.	109	54	89	1	.	227	G	202858125	C	G	202858125	2	3	5	1	0	0	0	0	0	0	0	1	12969	842	30	4		4	RABIF	1	202858125	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	19764182	202858125	46392496	10	449											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	228529240	228529240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OBSCN	NM_001271223	exon85	c.C20830T	p.R6944W	CAGGCACGGACAG	.	84	25	33	0	.	403	T	228529240	C	T	228529240	3	4	5	1	0	0	0	0	1	0	0	0	10812	527	19	1	18249	1	OBSCN	1	228529240	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	25671115	228529240	20721381	11	450											
ERO1LB	56605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236416758	236416758	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ERO1LB	NM_019891	exon3	c.T270C	p.C90C	TATTGAACAGTGG	.	360	82	131	2	.	90	G	236416758	A	G	236416758	2	3	5	1	0	0	0	0	0	0	0	1	5240	41	2	2		2	ERO1LB	1	236416758	Silent	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	7887518	236416758	12833863	12	451											
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248262994	248262994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR2L13	NM_175911	exon3	c.T317C	p.M106T	TGACCATGGCGTG	.	311	169	91	0	.	70	C	248262994	T	C	248262994	3	2	5	1	0	0	0	0	1	0	0	0	11006	1464	51	2	319	2	OR2L13	1	248262994	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	11846236	248262994	987627	13	452											
OR2T4	127074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248525893	248525893	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR2T4	NM_001004696	exon1	c.A1011G	p.L337L	AATGTTAACAGTG	.	689	225	257	0	.	68	G	248525893	A	G	248525893	2	3	5	1	0	0	0	0	0	0	0	1	11027	359	13	2		2	OR2T4	1	248525893	Silent	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	262899	248525893	724728	14	453											
OR2T27	403239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248813316	248813316	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR2T27	NM_001001824	exon1	c.C870A	p.Y290X	AAGGCTGTAAATG	.	573	83	197	0	.	47	T	248813316	G	T	248813316	4	4	5	1	0	0	0	0	0	1	0	0	11021	1372	48	3	86	3	OR2T27	1	248813316	Nonsense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	287423	248813316	437305	15	454											
SH3YL1	26751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218860	218860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SH3YL1	NM_015677	exon10	c.T980G	p.L327R	CCTCGAAGTTTTC	.	152	75	48	0	.	91	C	218860	A	C	218860	3	2	5	1	0	0	0	0	1	0	0	0	14263	72	3	5	52	5	SH3YL1	2	218860	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		218860	242980513	16	455											
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1796112	1796112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MYT1L	NM_015025	exon24	c.A3395G	p.N1132S	TGGATGTTAGCCA	.	214	81	60	1	.	95	C	1796112	T	C	1796112	3	2	5	1	0	0	0	0	1	0	0	0	10107	1725	60	2	167	2	MYT1L	2	1796112	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	1577252	1796112	241403261	17	456											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73717941	73717941	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ALMS1	NM_015120	exon10	c.G8852C	p.G2951A	CTCAAGGTCAGGA	.	86	33	62	0	.	142	C	73717941	G	C	73717941	3	2	5	1	0	0	0	0	1	0	0	0	535	1261	44	4	8890	4	ALMS1	2	73717941	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	71921829	73717941	169481432	18	457											
KCMF1	56888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85255054	85255054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	KCMF1	NM_020122	exon2	c.G59A	p.R20H	GAGGTCGCAGATA	.	258	103	166	0	.	24	A	85255054	G	A	85255054	3	1	5	1	0	0	0	0	1	0	0	0	8000	1087	38	1	65	1	KCMF1	2	85255054	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	11537113	85255054	157944319	19	458											
ZNF2	7549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95847630	95847630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF2	NM_021088	exon5	c.G1057T	p.D353Y	TTCTTTGACCGCT	.	119	54	54	0	.	90	T	95847630	G	T	95847630	3	4	5	1	0	0	0	0	1	0	0	0	17757	1290	45	3	1071	3	ZNF2	2	95847630	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	10592576	95847630	147351743	20	459											
TMEM131	23505	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98373568	98373568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TMEM131	NM_015348	exon41	c.G5646C	p.E1882D	TTAATTCTCGTGA	.	105	37	46	1	.	74	G	98373568	C	G	98373568	3	3	5	1	0	0	0	0	1	0	0	0	16041	912	32	4	9	4	TMEM131	2	98373568	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	2525938	98373568	144825805	21	460											
STK39	27347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169018309	169018309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	STK39	NM_013233	exon5	c.G616T	p.V206L	TTTGTACTGAACC	.	348	126	195	0	.	546	A	169018309	C	A	169018309	3	1	5	1	0	0	0	0	1	0	0	0	15304	565	20	3	1077	3	STK39	2	169018309	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	70644741	169018309	74181064	22	461											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38835301	38835301	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SCN10A	NM_006514	exon1	c.T201C	p.Y67Y	CTCACCATAGAAC	.	335	149	122	0	.	99	G	38835301	A	G	38835301	2	3	5	1	0	0	0	0	0	0	0	1	13912	224	8	2		2	SCN10A	3	38835301	Silent	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		38835301	159187129	23	462											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266132	41266133	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	CTNNB1,NS,carcinoma,+1	CTNNB1	NM_001098210	exon3	c.129_130insC	p.A43fs	CACAGCTCCTTCT	.	229	29	102	0	.	24361	C	41266133	-	C	41266132	7	5	5	1	0	1	1	0	0	0	0	0	4016	1538	54	0	135	0	CTNNB1	3	41266132	Frame_Shift_Ins	INS	-	TCGA-BC-A10U-01A-11D-A12Z-10	2430831	41266132	156756298	24	463	2	4									
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu	37	3	41266135	41266135	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	CTNNB1,NS,carcinoma,+2	CTNNB1	NM_001098209	exon3	c.T132C	p.P44P	AGCTCCTTCTCTG	.	231	72	105	0	.	24361	C	41266135	T	C	41266135	2	2	5	1	0	0	0	0	0	0	0	1	4016	1596	56	2		2	CTNNB1	3	41266135	Silent	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	3	41266135	156756295	25	464	2	4									
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	CTNNB1,NS,carcinoma,+1	CTNNB1	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	232	52	106	1	.	24361	T	41266137	C	T	41266137	3	4	5	1	0	0	0	0	1	0	0	0	4016	913	32	3	140	3	CTNNB1	3	41266137	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	2	41266137	156756293	26	465	2	4									
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266138	41266138	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	CTNNB1,NS,carcinoma,+2	CTNNB1	NM_001098209	exon3	c.135delT	p.S45fs	TCCTTCTCTGAGT	.	232	31	106	0	.	24361	-	41266138	T	-	41266138	7	5	5	1	0	1	0	1	0	0	0	0	4016	1538	54	0	141	0	CTNNB1	3	41266138	Frame_Shift_Del	DEL	T	TCGA-BC-A10U-01A-11D-A12Z-10	1	41266138	156756292	27	466	2	4									
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62739120	62739120	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CADPS	NM_003716	exon3	c.G884C	p.C295S	ACCTGGCAGGCAT	.	93	45	34	0	.	281	G	62739120	C	G	62739120	3	3	5	1	0	0	0	0	1	0	0	0	2570	710	25	4	3362	4	CADPS	3	62739120	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	21472982	62739120	135283310	28	467											
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111710276	111710279	+	Frame_Shift_Del	DEL	CTGA	CTGA	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	CTGA	CTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ABHD10	NM_018394	exon5	c.629_632del	p.210_211del	AATACTCTGAAGA	.	211	83	96	0	.	90	-	111710279	CTGA	-	111710276	7	5	5	1	0	1	0	1	0	0	0	0	74	913	32	0	647	0	ABHD10	3	111710276	Frame_Shift_Del	DEL	CTGA	TCGA-BC-A10U-01A-11D-A12Z-10	48971156	111710276	86312154	29	468											
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123650008	123650008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CCDC14	NM_022757	exon11	c.A1740G	p.I580M	CCCCAATATCTGG	.	340	125	217	0	.	68	C	123650008	T	C	123650008	3	2	5	1	0	0	0	0	1	0	0	0	2773	1396	49	2	1006	2	CCDC14	3	123650008	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	11939732	123650008	74372422	30	469											
NEK11	79858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130748574	130748574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NEK11	NM_024800	exon3	c.G22T	p.A8S	GAGGCAGCTAAGT	.	188	89	79	0	.	848	T	130748574	G	T	130748574	3	4	5	1	0	0	0	0	1	0	0	0	10323	971	34	3	24	3	NEK11	3	130748574	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	7098566	130748574	67273856	31	470											
C3orf72	401089	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138669225	138669225	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	C3orf72	NM_001040061	exon3	c.C339T	p.L113L	ACCACTCAGCTCG	.	26	9	34	0	.	22	T	138669225	C	T	138669225	2	4	5	1	0	0	0	0	0	0	0	1	2244	813	29	3		3	C3orf72	3	138669225	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	7920651	138669225	59353205	32	471											
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167246878	167246878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	WDR49	NM_178824	exon10	c.G1312A	p.G438R	GATCTCCTGTGGT	.	273	93	140	0	.	155	T	167246878	C	T	167246878	3	4	5	1	0	0	0	0	1	0	0	0	17299	690	24	3	805	3	WDR49	3	167246878	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	28577653	167246878	30775552	33	472											
ZCCHC4	29063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25353268	25353268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZCCHC4	NM_024936	exon8	c.G968T	p.R323L	AATCCCGAATTTG	.	343	134	123	0	.	70	T	25353268	G	T	25353268	3	4	5	1	0	0	0	0	1	0	0	0	17587	1058	37	1	998	1	ZCCHC4	4	25353268	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10		25353268	165801008	34	473											
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39322038	39322038	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	RFC1	NM_002913	exon9	c.C1060G	p.P354A	TCTTAGGAGTTTT	.	267	108	166	0	.	230	C	39322038	G	C	39322038	3	2	5	1	0	0	0	0	1	0	0	0	13244	1174	41	4	2451	4	RFC1	4	39322038	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	13968770	39322038	151832238	35	474											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	44449751	44449751	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	KCTD8	NM_198353	exon1	c.A790T	p.K264X	TGTACTTCTCCGG	.	55	16	53	0	.	92	A	44449751	T	A	44449751	4	1	5	1	0	0	0	0	0	1	0	0	8115	1792	62	4	639	4	KCTD8	4	44449751	Nonsense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	5127713	44449751	146704525	36	475											
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113510881	113510881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	C4orf21	NM_018392	exon11	c.G3126C	p.E1042D	ACTACCCTCCAAG	.	150	107	151	0	.	90	G	113510881	C	G	113510881	3	3	5	1	0	0	0	0	1	0	0	0	2254	695	24	4	3260	4	C4orf21	4	113510881	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	69061130	113510881	77643395	37	476											
TNIP3	79931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122085259	122085259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TNIP3	NM_001244764	exon4	c.A253G	p.T85A	TAGATGTGCCCTG	.	162	55	66	0	.	91	C	122085259	T	C	122085259	3	2	5	1	0	0	0	0	1	0	0	0	16313	1696	59	2	999	2	TNIP3	4	122085259	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	8574378	122085259	69069017	38	477											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071720	134071720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PCDH10	NM_032961	exon1	c.C425A	p.P142H	GCTTCCCCTTGGA	.	51	22	32	0	.	92	A	134071720	C	A	134071720	3	1	5	1	0	0	0	0	1	0	0	0	11507	623	22	3	427	3	PCDH10	4	134071720	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	11986461	134071720	57082556	39	478											
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	IRF2	NM_002199	exon3	c.C122T	p.A41V	CTAGCCGCATGCA	.	61	12	33	0	.	91	A	185340688	G	A	185340688	3	1	5	1	0	0	0	0	1	0	0	0	7828	1087	38	1	955	1	IRF2	4	185340688	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	51268968	185340688	5813588	40	479											
FRG1	2483	broad.mit.edu;mdanderson.org	37	4	190874235	190874235	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	FRG1	NM_004477	exon4	c.C272G	p.P91R	AGGGCCCTAGTCC	.	1922	120	910	1	.	90	G	190874235	C	G	190874235	3	3	5	1	0	0	0	0	1	0	0	0	6046	681	24	4	286	4	FRG1	4	190874235	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	5533547	190874235	280041	41	480											
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140645	140645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PLEKHG4B	NM_052909	exon1	c.C223T	p.R75W	GCAGGGCGGACTC	.	153	67	100	0	.	228	T	140645	C	T	140645	3	4	5	1	0	0	0	0	1	0	0	0	12072	759	27	1	225	1	PLEKHG4B	5	140645	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10		140645	180774615	42	481											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123982848	123982848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF608	NM_020747	exon4	c.T3229A	p.S1077T	AAAGTGACTGAGC	.	291	111	148	0	.	229	T	123982848	A	T	123982848	3	4	5	1	0	0	0	0	1	0	0	0	18031	275	10	4	1333	4	ZNF608	5	123982848	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	123842203	123982848	56932412	43	482											
LMNB1	4001	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	126145938	126145938	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	LMNB1	NM_005573	exon4	c.G709T	p.E237X	CAAATTGAGTATG	.	102	37	69	1	.	226	T	126145938	G	T	126145938	4	4	5	1	0	0	0	0	0	1	0	0	8849	1291	45	3	723	3	LMNB1	5	126145938	Nonsense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	2163090	126145938	54769322	44	483											
H2AFY	9555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134724771	134724771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	H2AFY	NM_138610	exon2	c.G13A	p.G5S	TCCCACCGCGGCT	.	52	21	24	0	.	90	T	134724771	C	T	134724771	3	4	5	1	0	0	0	0	1	0	0	0	6929	652	23	1	1232	1	H2AFY	5	134724771	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	8578833	134724771	46190489	45	484											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136314376	136314376	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SPOCK1	NM_004598	exon11	c.T1287C	p.D429D	TTTGTCATCATCC	.	303	130	123	0	.	91	G	136314376	A	G	136314376	2	3	5	1	0	0	0	0	0	0	0	1	15078	214	8	2		2	SPOCK1	5	136314376	Silent	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	1589605	136314376	44600884	46	485											
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148745666	148745666	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PCYOX1L	NM_024028	exon4	c.C632G	p.A211G	TTTCTGCTGTCCT	.	73	28	31	0	.	91	G	148745666	C	G	148745666	3	3	5	1	0	0	0	0	1	0	0	0	11609	797	28	4	646	4	PCYOX1L	5	148745666	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	12431290	148745666	32169594	47	486											
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070173	176070173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	.	NM_001099408	exon4	c.C106A	p.P36T	AAGTCTCCAAACT	.	185	72	113	0	.	.	A	176070173	C	A	176070173	3	1	5	1	0	0	0	0	1	0	0	0	5029	855	30	3	112	3	EIF4E1B	5	176070173	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	27324507	176070173	4845087	48	487											
PRPF4B	8899	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4053106	4053106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PRPF4B	NM_003913	exon11	c.T2465C	p.L822P	ATATCCTGGTAAG	.	181	46	44	1	.	1308	C	4053106	T	C	4053106	3	2	5	1	0	0	0	0	1	0	0	0	12573	1594	55	2	2507	2	PRPF4B	6	4053106	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10		4053106	167061961	49	488											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12162108	12162108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	HIVEP1	NM_002114	exon8	c.G6924T	p.E2308D	CCCTGAGTCAGAA	.	346	81	85	0	.	139	T	12162108	G	T	12162108	3	4	5	1	0	0	0	0	1	0	0	0	7186	1020	36	3	6950	3	HIVEP1	6	12162108	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	8109002	12162108	158952959	50	489											
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18215297	18215297	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	KDM1B	NM_153042	exon16	c.C1473A	p.T491T	GAGGACCCTGGAT	.	141	30	51	0	.	91	A	18215297	C	A	18215297	2	1	5	1	0	0	0	0	0	0	0	1	8123	610	22	3		3	KDM1B	6	18215297	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	6053189	18215297	152899770	51	490											
HIST1H4G	8369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26246995	26246995	+	Missense_Mutation	SNP	C	C	T	rs140916075		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	HIST1H4G	NM_003547	exon1	c.G211A	p.V71M	TGGTCACGGCGTA	.	223	120	82	0	C|1.000;T|0.000	68	T	26246995	C	T	26246995	3	4	5	1	0	0	0	0	1	0	0	0	7171	536	19	1	89	1	HIST1H4G	6	26246995	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	8031698	26246995	144868072	52	491											
PRSS16	10279	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27218524	27218524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PRSS16	NM_005865	exon5	c.G530T	p.S177I	CCTCCAGCCCCTG	.	179	45	42	1	.	94	T	27218524	G	T	27218524	3	4	5	1	0	0	0	0	1	0	0	0	12616	971	34	3	548	3	PRSS16	6	27218524	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	971529	27218524	143896543	53	492											
OR2J3	442186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080433	29080433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR2J3	NM_001005216	exon1	c.A766T	p.I256F	TTTTTCATTCCGG	.	868	202	181	1	.	90	T	29080433	A	T	29080433	3	4	5	1	0	0	0	0	1	0	0	0	11004	217	8	4	768	4	OR2J3	6	29080433	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	1861909	29080433	142034634	54	493											
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32035476	32035476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TNXB	NM_019105	exon18	c.G6506A	p.G2169E	CGCCGCCCCTCGT	.	157	73	74	1	.	90	T	32035476	C	T	32035476	3	4	5	1	0	0	0	0	1	0	0	0	16343	623	22	3	8315	3	TNXB	6	32035476	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	2955043	32035476	139079591	55	494											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38810541	38810541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	DNAH8	NM_001206927	exon35	c.G4707A	p.M1569I	AATGATGACCAAT	.	319	67	84	0	.	615	A	38810541	G	A	38810541	3	1	5	1	0	0	0	0	1	0	0	0	4607	1290	45	3	4178	3	DNAH8	6	38810541	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	6775065	38810541	132304526	56	495											
TNFRSF21	27242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47252058	47252058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TNFRSF21	NM_014452	exon3	c.G859A	p.D287N	TCACGTCTTCCTT	.	418	170	191	1	.	227	T	47252058	C	T	47252058	3	4	5	1	0	0	0	0	1	0	0	0	16292	913	32	3	1124	3	TNFRSF21	6	47252058	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	8441517	47252058	123863009	57	496											
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70852682	70852682	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	COL19A1	NM_001858	exon23	c.C1596T	p.S532S	AGGCTCCATGGGA	.	77	29	54	0	.	156	T	70852682	C	T	70852682	2	4	5	1	0	0	0	0	0	0	0	1	3676	581	21	3		3	COL19A1	6	70852682	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	23600624	70852682	100262385	58	497											
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161006134	161006134	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	LPA	NM_005577	exon27	c.T4233G	p.S1411S	CGACCAAGACTGA	.	216	66	91	0	.	74	C	161006134	A	C	161006134	2	2	5	1	0	0	0	0	0	0	0	1	8903	59	3	5		5	LPA	6	161006134	Silent	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	90153452	161006134	10108933	59	498											
C6orf118	168090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165715292	165715292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	C6orf118	NM_144980	exon2	c.G519T	p.R173S	TTCCCTCCTGCGC	.	42	19	27	0	.	90	A	165715292	C	A	165715292	3	1	5	1	0	0	0	0	1	0	0	0	2323	854	30	3	922	3	C6orf118	6	165715292	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	4709158	165715292	5399775	60	499											
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17908059	17908059	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SNX13	NM_015132	exon9	c.G808C	p.D270H	TATAATCAGGATC	.	347	110	124	0	.	650	G	17908059	C	G	17908059	3	3	5	1	0	0	0	0	1	0	0	0	14884	826	29	4	2137	4	SNX13	7	17908059	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10		17908059	141230604	61	500											
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20199410	20199410	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MACC1	NM_182762	exon5	c.T574A	p.C192S	CAAGGCAGGAGCG	.	175	41	93	0	.	93	T	20199410	A	T	20199410	3	4	5	1	0	0	0	0	1	0	0	0	9143	188	7	4	1996	4	MACC1	7	20199410	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	2291351	20199410	138939253	62	501											
ZNF679	168417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	63726562	63726562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF679	NM_153363	exon5	c.T551G	p.F184C	AACATTTCAAATG	.	428	230	196	0	.	1	G	63726562	T	G	63726562	3	3	5	1	0	0	0	0	1	0	0	0	18083	1783	62	5	565	5	ZNF679	7	63726562	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	43527152	63726562	95412101	63	502											
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98506458	98506458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TRRAP	NM_001244580	exon14	c.A1223G	p.D408G	TCGACGATGAGTC	.	132	38	45	0	.	923	G	98506458	A	G	98506458	3	3	5	1	0	0	0	0	1	0	0	0	16598	333	12	2	1273	2	TRRAP	7	98506458	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	34779896	98506458	60632205	64	503											
COPS6	10980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99686935	99686935	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	COPS6	NM_006833	exon2	c.C99T	p.C33C	GGCCTGCGGAGTG	.	157	50	34	0	.	658	T	99686935	C	T	99686935	2	4	5	1	0	0	0	0	0	0	0	1	3737	776	27	1		1	COPS6	7	99686935	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	1180477	99686935	59451728	65	504											
C7orf61	402573	hgsc.bcm.edu;broad.mit.edu	37	7	100054424	100054425	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	.	NM_001004323	exon3	c.572_573insC	p.R191fs	TTGGGTCGGGGGG	.	96	19	29	0	.	.	G	100054425	-	G	100054424	7	5	5	1	0	1	1	0	0	0	0	0	2408	884	31	0	52	0	C7orf61	7	100054424	Frame_Shift_Ins	INS	-	TCGA-BC-A10U-01A-11D-A12Z-10	367489	100054424	59084239	66	505											
NAPEPLD	222236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102743978	102743978	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NAPEPLD	NM_001122838	exon5	c.G1080A	p.K360K	ATTCAGCTTCACT	.	548	154	191	1	.	227	T	102743978	C	T	102743978	2	4	5	1	0	0	0	0	0	0	0	1	10163	796	28	3		3	NAPEPLD	7	102743978	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	2689554	102743978	56394685	67	506											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	151884488	151884488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MLL3	NM_170606	exon33	c.G4867T	p.E1623X	CTCCTTCCACAGT	.	212	112	94	0	.	1398	A	151884488	C	A	151884488	4	1	5	1	0	0	0	0	0	1	0	0	9622	864	30	3	9976	3	MLL3	7	151884488	Nonsense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	49140510	151884488	7254175	68	507											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41573290	41573290	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ANK1	NM_001142446	exon14	c.1581delC	p.A527fs	GGGGTTGGCGTTA	.	145	68	69	0	.	716	-	41573290	G	-	41573290	7	5	5	1	0	1	0	1	0	0	0	0	620	1335	47	0	4633	0	ANK1	8	41573290	Frame_Shift_Del	DEL	G	TCGA-BC-A10U-01A-11D-A12Z-10		41573290	104790732	69	508											
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	88885240	88885242	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	DCAF4L2	NM_152418	exon1	c.958_960del	p.320_320del	CACATGCACGGGT	.	205	26	111	0	.	91	-	88885242	CAC	-	88885240	7	5	5	1	0	1	0	1	0	0	0	0	4272	697	25	0	231	0	DCAF4L2	8	88885240	In_Frame_Del	DEL	CAC	TCGA-BC-A10U-01A-11D-A12Z-10	47311950	88885240	57478782	70	509	3	2									
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	88885245	88885246	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	DCAF4L2	NM_152418	exon1	c.954_955del	p.318_319del	GCACGGGTAGGTA	.	214	27	114	0	.	91	-	88885246	GT	-	88885245	7	5	5	1	0	1	0	1	0	0	0	0	4272	1261	44	0	236	0	DCAF4L2	8	88885245	Frame_Shift_Del	DEL	GT	TCGA-BC-A10U-01A-11D-A12Z-10	5	88885245	57478777	71	510	3	2									
EIF3E	3646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109229595	109229595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	EIF3E	NM_001568	exon8	c.G817T	p.V273F	TTAGAACCTGCCG	.	46	12	18	0	.	188	A	109229595	C	A	109229595	3	1	5	1	0	0	0	0	1	0	0	0	5015	507	18	3	544	3	EIF3E	8	109229595	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	20344350	109229595	37134427	72	511											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133925494	133925494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TG	NM_003235	exon20	c.G4362C	p.Q1454H	CAGTCAGGACGGA	.	148	53	52	0	.	145	C	133925494	G	C	133925494	3	2	5	1	0	0	0	0	1	0	0	0	15810	991	35	4	4440	4	TG	8	133925494	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	24695899	133925494	12438528	73	512											
SPATC1	375686	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145101782	145101782	+	Silent	SNP	C	C	T	rs140647326	byfrequency;alternate_allele	TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SPATC1	NM_198572	exon5	c.C1701T	p.L567L	CATGCTCGCCGAC	.	45	20	31	0	C|0.999;A|0.001	91	T	145101782	C	T	145101782	2	4	5	1	0	0	0	0	0	0	0	1	15016	871	31	1		1	SPATC1	8	145101782	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	11176288	145101782	1262240	74	513											
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130442485	130442485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	STXBP1	NM_001032221	exon17	c.C1511T	p.T504I	TCTCTACCCGTTC	.	47	36	35	0	.	91	T	130442485	C	T	130442485	3	4	5	1	0	0	0	0	1	0	0	0	15351	507	18	3	1577	3	STXBP1	9	130442485	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10		130442485	10770946	75	514											
VAV2	7410	ucsc.edu;bcgsc.ca	37	9	136650970	136650970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	VAV2	NM_001134398	exon17	c.A1460G	p.K487R	CCCTGCTTTCCTT	.	49	4	45	0	.	1273	C	136650970	T	C	136650970	3	2	5	1	0	0	0	0	1	0	0	0	17129	1609	56	2	1232	2	VAV2	9	136650970	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	6208485	136650970	4562461	76	515											
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	7773850	7773850	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ITIH2	NM_002216	exon13	c.1538delT	p.V513fs	CGGACGTCACTCA	.	81	39	53	0	.	93	-	7773850	T	-	7773850	7	5	5	1	0	1	0	1	0	0	0	0	7904	1667	58	0	1588	0	ITIH2	10	7773850	Frame_Shift_Del	DEL	T	TCGA-BC-A10U-01A-11D-A12Z-10		7773850	127760897	77	516											
FAM188A	80013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15858832	15858832	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	FAM188A	NM_024948	exon11	c.882+2T>C	.	AAGCATACCTTGG	.	162	57	87	0	.	228	G	15858832	A	G	15858832	5	3	5	1	0	0	0	0	0	0	1	0	5514	405	14	2	477	2	FAM188A	10	15858832	Splice_Site	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	8084982	15858832	119675915	78	517											
VIM	7431	hgsc.bcm.edu;broad.mit.edu	37	10	17277290	17277291	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	VIM	NM_003380	exon7	c.1131_1132insC	p.A377fs	AATGGCTCGTCAC	.	126	9	63	0	.	291	C	17277291	-	C	17277290	7	5	5	1	0	1	1	0	0	0	0	0	17163	1538	54	0	1153	0	VIM	10	17277290	Frame_Shift_Ins	INS	-	TCGA-BC-A10U-01A-11D-A12Z-10	1418458	17277290	118257457	79	518											
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46999358	46999358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	GPRIN2	NM_014696	exon3	c.G478A	p.G160S	CCAGGTGGTACTT	.	37	7	30	0	.	90	A	46999358	G	A	46999358	3	1	5	1	0	0	0	0	1	0	0	0	6730	1348	47	3	480	3	GPRIN2	10	46999358	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	29722068	46999358	88535389	80	519											
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50827803	50827803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CHAT	NM_020549	exon3	c.G420C	p.Q140H	GCTGCAGCAGACC	.	30	13	27	0	.	514	C	50827803	G	C	50827803	3	2	5	1	0	0	0	0	1	0	0	0	3313	962	34	4	474	4	CHAT	10	50827803	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	3828445	50827803	84706944	81	520											
PRKG1	5592	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52834527	52834527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PRKG1	NM_006258	exon1	c.G177T	p.Q59H	CCAGCAGGCGCAG	.	166	70	113	1	.	523	T	52834527	G	T	52834527	3	4	5	1	0	0	0	0	1	0	0	0	12522	991	35	3	449	3	PRKG1	10	52834527	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	2006724	52834527	82700220	82	521											
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97402774	97402774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ALDH18A1	NM_001017423	exon3	c.G278A	p.G93E	AAGCGCCCCAGGG	.	73	32	41	0	.	117	T	97402774	C	T	97402774	3	4	5	1	0	0	0	0	1	0	0	0	489	623	22	3	2173	3	ALDH18A1	10	97402774	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	44568247	97402774	38131973	83	522											
SORCS3	22986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106976778	106976778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SORCS3	NM_014978	exon19	c.G2632C	p.G878R	GAGGACGGCATCA	.	112	53	61	1	.	99	C	106976778	G	C	106976778	3	2	5	1	0	0	0	0	1	0	0	0	14932	1116	39	4	2706	4	SORCS3	10	106976778	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	9574004	106976778	28557969	84	523											
FANK1	92565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127684064	127684064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	FANK1	NM_145235	exon4	c.G395C	p.G132A	TTCAAGGAGGGTG	.	521	210	254	0	.	91	C	127684064	G	C	127684064	3	2	5	1	0	0	0	0	1	0	0	0	5672	1174	41	4	409	4	FANK1	10	127684064	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	20707286	127684064	7850683	85	524											
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128193357	128193357	+	Missense_Mutation	SNP	C	C	A	rs199676174	alternate_allele	TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	C10orf90	NM_001004298	exon3	c.G412T	p.A138S	TGGATGCAAACCC	.	55	21	36	0	C|1.000;G|0.000	92	A	128193357	C	A	128193357	3	1	5	1	0	0	0	0	1	0	0	0	1623	710	25	3	1715	3	C10orf90	10	128193357	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	509293	128193357	7341390	86	525											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134981785	134981785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	KNDC1	NM_152643	exon3	c.C329A	p.P110H	TTCCCCCCGAGTT	.	43	13	27	0	.	229	A	134981785	C	A	134981785	3	1	5	1	0	0	0	0	1	0	0	0	8426	623	22	3	339	3	KNDC1	10	134981785	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	6788428	134981785	552962	87	526											
MUC5B	727897	ucsc.edu;bcgsc.ca	37	11	1261426	1261426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	.	NM_002458	exon30	c.A3791G	p.E1264G	CCTATGAGGACAG	.	36	5	37	1	.	.	G	1261426	A	G	1261426	3	3	5	1	0	0	0	0	1	0	0	0	9979	304	11	2	3918	2	MUC5B	11	1261426	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		1261426	133745090	88	527											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1280240	1280240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	.	NM_002458	exon44	c.C16662A	p.D5554E	CCAGGACCCAACG	.	30	10	25	0	.	.	A	1280240	C	A	1280240	3	1	5	1	0	0	0	0	1	0	0	0	9979	506	18	3	16845	3	MUC5B	11	1280240	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	18814	1280240	133726276	89	528											
OR51L1	119682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5020988	5020988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR51L1	NM_001004755	exon1	c.G776A	p.G259E	TTATTGGGGTGTC	.	361	162	162	0	.	69	A	5020988	G	A	5020988	3	1	5	1	0	0	0	0	1	0	0	0	11102	1232	43	3	778	3	OR51L1	11	5020988	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	3740748	5020988	129985528	90	529											
OR52E2	119678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	5079905	5079905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR52E2	NM_001005164	exon1	c.A953T	p.E318V	AGGTACTCTTCCT	.	121	34	66	0	.	71	A	5079905	T	A	5079905	3	1	5	1	0	0	0	0	1	0	0	0	11115	1551	54	4	27	4	OR52E2	11	5079905	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	58917	5079905	129926611	91	530											
OR52H1	390067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5566529	5566529	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR52H1	NM_001005289	exon1	c.C225A	p.A75A	AGTCATGGCCAGC	.	212	80	93	0	.	114	T	5566529	G	T	5566529	2	4	5	1	0	0	0	0	0	0	0	1	11119	1335	47	3		3	OR52H1	11	5566529	Silent	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	486624	5566529	129439987	92	531											
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11964527	11964527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	USP47	NM_017944	exon19	c.G2755T	p.D919Y	ACATGGGATACAG	.	152	62	88	0	.	660	T	11964527	G	T	11964527	3	4	5	1	0	0	0	0	1	0	0	0	17075	1174	41	3	2829	3	USP47	11	11964527	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	6397998	11964527	123041989	93	532											
F2	2147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46747715	46747715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	F2	NM_000506	exon7	c.A866G	p.N289S	ACCTCAACTATTG	.	27	12	24	0	.	93	G	46747715	A	G	46747715	3	3	5	1	0	0	0	0	1	0	0	0	5342	43	2	2	892	2	F2	11	46747715	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	34783188	46747715	88258801	94	533											
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62761284	62761284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SLC22A8	NM_001184732	exon9	c.G1283A	p.C428Y	AAGAGGCAGCTGA	.	145	68	89	0	.	93	T	62761284	C	T	62761284	3	4	5	1	0	0	0	0	1	0	0	0	14460	710	25	3	357	3	SLC22A8	11	62761284	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	16013569	62761284	72245232	95	534											
MACROD1	28992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63918758	63918758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MACROD1	NM_014067	exon3	c.T470C	p.L157P	CTGCGGAGCAGGG	.	116	44	63	0	.	68	G	63918758	A	G	63918758	3	3	5	1	0	0	0	0	1	0	0	0	9145	304	11	2	539	2	MACROD1	11	63918758	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	1157474	63918758	71087758	96	535											
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	65810799	65810799	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	GAL3ST3	NM_033036	exon3	c.G475T	p.E159X	GCGACTCGAACAT	.	34	9	43	0	.	91	A	65810799	C	A	65810799	4	1	5	1	0	0	0	0	0	1	0	0	6199	893	31	1	824	1	GAL3ST3	11	65810799	Nonsense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	1892041	65810799	69195717	97	536											
NPAS4	266743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66191452	66191452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NPAS4	NM_178864	exon7	c.C1091T	p.T364I	TCTTCACCGCAGC	.	58	24	35	0	.	90	T	66191452	C	T	66191452	3	4	5	1	0	0	0	0	1	0	0	0	10565	507	18	3	1117	3	NPAS4	11	66191452	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	380653	66191452	68815064	98	537											
SYT12	91683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66807406	66807406	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SYT12	NM_001177880	exon4	c.353delG	p.R118fs	TGGGCCGGGAGTT	.	68	21	48	0	.	91	-	66807406	G	-	66807406	7	5	5	1	0	1	0	1	0	0	0	0	15465	1116	39	0	363	0	SYT12	11	66807406	Frame_Shift_Del	DEL	G	TCGA-BC-A10U-01A-11D-A12Z-10	615954	66807406	68199110	99	538	4	2									
SYT12	91683	hgsc.bcm.edu;bcgsc.ca	37	11	66807409	66807409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SYT12	NM_001177880	exon4	c.A356C	p.E119A	GCCGGGAGTTGGA	.	72	24	47	0	.	91	C	66807409	A	C	66807409	3	2	5	1	0	0	0	0	1	0	0	0	15465	304	11	5	366	5	SYT12	11	66807409	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	3	66807409	68199107	100	539	4	2									
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89924847	89924847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NAALAD2	NM_005467	exon19	c.A2155G	p.K719E	GAAGTAAAGAAAC	.	109	39	48	0	.	92	G	89924847	A	G	89924847	3	3	5	1	0	0	0	0	1	0	0	0	10128	15	1	2	2229	2	NAALAD2	11	89924847	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	23117438	89924847	45081669	101	540											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616349	92616349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	FAT3	NM_001008781	exon23	c.A12727G	p.S4243G	TTCCAGAGTGACT	.	26	17	23	0	.	73	G	92616349	A	G	92616349	3	3	5	1	0	0	0	0	1	0	0	0	5691	304	11	2	12817	2	FAT3	11	92616349	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	2691502	92616349	42390167	102	541											
OR10G7	390265	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	123909593	123909593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	OR10G7	NM_001004463	exon1	c.G116T	p.G39V	AGGTTCCCCAGCA	.	553	245	174	1	.	70	A	123909593	C	A	123909593	3	1	5	1	0	0	0	0	1	0	0	0	10902	623	22	3	823	3	OR10G7	11	123909593	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	31293244	123909593	11096923	103	542											
ADAMTS8	11095	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	130297694	130297694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ADAMTS8	NM_007037	exon1	c.G488A	p.R163Q	GGTCCTCGCGGGA	.	61	28	46	1	.	226	T	130297694	C	T	130297694	3	4	5	1	0	0	0	0	1	0	0	0	272	884	31	1	2217	1	ADAMTS8	11	130297694	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	6388101	130297694	4708822	104	543											
NCAPD3	23310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134073725	134073725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NCAPD3	NM_015261	exon11	c.T1292C	p.L431P	AAGGAGAGGGTGT	.	133	46	70	2	.	229	G	134073725	A	G	134073725	3	3	5	1	0	0	0	0	1	0	0	0	10206	304	11	2	3304	2	NCAPD3	11	134073725	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	3776031	134073725	932791	105	544											
PARP11	57097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3939168	3939168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PARP11	NM_020367	exon2	c.C35G	p.A12G	TCTTCTGCTTTGT	.	178	77	126	0	.	523	C	3939168	G	C	3939168	3	2	5	1	0	0	0	0	1	0	0	0	11456	1319	46	4	1009	4	PARP11	12	3939168	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10		3939168	129912727	106	545											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6710565	6710565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CHD4	NM_001273	exon6	c.C689T	p.A230V	GCTGCTGCCGCAG	.	74	25	53	0	.	228	A	6710565	G	A	6710565	3	1	5	1	0	0	0	0	1	0	0	0	3327	1319	46	3	5189	3	CHD4	12	6710565	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	2771397	6710565	127141330	107	546											
CCDC65	85478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49312509	49312509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CCDC65	NM_033124	exon6	c.C849A	p.S283R	ACACAGCCGTGAG	.	104	45	93	0	.	92	A	49312509	C	A	49312509	3	1	5	1	0	0	0	0	1	0	0	0	2837	738	26	3	871	3	CCDC65	12	49312509	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	42601944	49312509	84539386	108	547											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49449093	49449100	+	Frame_Shift_Del	DEL	CTTCTGGC	CTTCTGGC	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	CTTCTGGC	CTTCTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MLL2	NM_003482	exon1	c.8_15del	p.3_5del	AGCCAGCTTCTGG	.	90	26	93	0	.	612	-	49449100	CTTCTGGC	-	49449093	7	5	5	1	0	1	0	1	0	0	0	0	9621	796	28	0	16814	0	MLL2	12	49449093	Frame_Shift_Del	DEL	CTTCTGGC	TCGA-BC-A10U-01A-11D-A12Z-10	136584	49449093	84402802	109	548											
MFSD5	84975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53647509	53647509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MFSD5	NM_001170790	exon2	c.C1211A	p.S404Y	GCTCTTCCCTGTA	.	141	52	62	0	.	93	A	53647509	C	A	53647509	3	1	5	1	0	0	0	0	1	0	0	0	9534	855	30	3	1217	3	MFSD5	12	53647509	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	4198416	53647509	80204386	110	549											
IRAK3	11213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66641584	66641584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	IRAK3	NM_007199	exon12	c.C1424A	p.P475Q	ATGTACCAAGTAT	.	274	97	185	2	.	1379	A	66641584	C	A	66641584	3	1	5	1	0	0	0	0	1	0	0	0	7824	594	21	3	1470	3	IRAK3	12	66641584	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	12994075	66641584	67210311	111	550											
PTPRR	5801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71139795	71139795	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PTPRR	NM_002849	exon6	c.C810T	p.H270H	CGATAGGTGGATC	.	697	276	302	0	.	652	A	71139795	G	A	71139795	2	1	5	1	0	0	0	0	0	0	0	1	12810	1252	44	3		3	PTPRR	12	71139795	Silent	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	4498211	71139795	62712100	112	551											
PLEKHG7	440107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	93148009	93148009	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PLEKHG7	NM_001004330	exon6	c.C459G	p.Y153X	GATCTACTCCATC	.	111	40	63	0	.	23	G	93148009	C	G	93148009	4	3	5	1	0	0	0	0	0	1	0	0	12075	576	20	4	477	4	PLEKHG7	12	93148009	Nonsense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	22008214	93148009	40703886	113	552											
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98938128	98938128	+	Splice_Site	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TMPO	NM_001032283	exon5	c.783+1G>C	.	AAAAGGGTGATGC	.	140	51	65	0	.	93	C	98938128	G	C	98938128	5	2	5	1	0	0	0	0	0	0	1	0	16234	1275	44	4	2326	4	TMPO	12	98938128	Splice_Site	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	5790119	98938128	34913767	114	553											
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122745969	122745969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	VPS33A	NM_022916	exon4	c.G322C	p.D108H	GAAAATCTCTCGT	.	127	43	61	0	.	91	G	122745969	C	G	122745969	3	3	5	1	0	0	0	0	1	0	0	0	17198	913	32	4	1508	4	VPS33A	12	122745969	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	23807841	122745969	11105926	115	554											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	23905027	23905027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SACS	NM_014363	exon10	c.A12988G	p.R4330G	ACCGCCTAATAAT	.	271	14	139	0	.	298	C	23905027	T	C	23905027	3	2	5	1	0	0	0	0	1	0	0	0	13804	1521	53	2	755	2	SACS	13	23905027	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10		23905027	91264851	116	555											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52509060	52509060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NID2	NM_007361	exon7	c.C1588A	p.H530N	CTCGGTGAGGTGC	.	68	34	23	0	.	158	T	52509060	G	T	52509060	3	4	5	1	0	0	0	0	1	0	0	0	10415	1290	45	3	2603	3	NID2	14	52509060	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10		52509060	54840480	117	556											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81862242	81862242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	STON2	NM_001256430	exon4	c.G369C	p.E123D	ACCTGTCTCAGCT	.	118	50	51	0	.	95	G	81862242	C	G	81862242	3	3	5	1	0	0	0	0	1	0	0	0	15317	912	32	4	2362	4	STON2	14	81862242	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	29353182	81862242	25487298	118	557											
SMEK1	55671	ucsc.edu;bcgsc.ca	37	14	91952073	91952073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SMEK1	NM_032560	exon4	c.A200G	p.D67G	AGAGTGTCCTTTG	.	34	4	24	0	.	226	C	91952073	T	C	91952073	3	2	5	1	0	0	0	0	1	0	0	0	14793	1681	58	2	2314	2	SMEK1	14	91952073	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	10089831	91952073	15397467	119	558											
NUDT14	256281	hgsc.bcm.edu;bcgsc.ca	37	14	105643003	105643004	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NUDT14	NM_177533	exon4	c.296_297insG	p.V99fs	ACTGTCACCCCCG	.	48	18	48	0	.	91	C	105643004	-	C	105643003	7	5	5	1	0	1	1	0	0	0	0	0	10730	159	6	0	380	0	NUDT14	14	105643003	Frame_Shift_Ins	INS	-	TCGA-BC-A10U-01A-11D-A12Z-10	13690930	105643003	1706537	120	559											
GNB5	10681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52418147	52418147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	GNB5	NM_016194	exon11	c.G1007T	p.S336I	TTACCACTGAGGG	.	213	79	76	0	.	227	A	52418147	C	A	52418147	3	1	5	1	0	0	0	0	1	0	0	0	6521	565	20	3	192	3	GNB5	15	52418147	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10		52418147	50113245	121	560											
CYP11A1	1583	broad.mit.edu;bcgsc.ca	37	15	74637399	74637399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CYP11A1	NM_000781	exon3	c.G611A	p.R204H	GCAAAGCGGAACA	.	90	6	38	0	.	92	T	74637399	C	T	74637399	3	4	5	1	0	0	0	0	1	0	0	0	4144	768	27	1	982	1	CYP11A1	15	74637399	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	22219252	74637399	27893993	122	561											
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10574815	10574815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ATF7IP2	NM_001256160	exon11	c.A1562G	p.Q521R	AAATGCAGTCCAG	.	77	27	52	0	.	186	G	10574815	A	G	10574815	3	3	5	1	0	0	0	0	1	0	0	0	1088	175	7	2	1663	2	ATF7IP2	16	10574815	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		10574815	79779938	123	562											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	30724538	30724538	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SRCAP	NM_006662	exon15	c.A2140T	p.K714X	TGGACCAAGCCCA	.	123	47	51	0	.	94	T	30724538	A	T	30724538	4	4	5	1	0	0	0	0	0	1	0	0	15134	131	5	4	2190	4	SRCAP	16	30724538	Nonsense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	20149723	30724538	59630215	124	563	5	2									
SRCAP	10847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30724539	30724539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SRCAP	NM_006662	exon15	c.A2141G	p.K714R	GGACCAAGCCCAA	.	123	48	51	1	.	94	G	30724539	A	G	30724539	3	3	5	1	0	0	0	0	1	0	0	0	15134	72	3	2	2191	2	SRCAP	16	30724539	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	1	30724539	59630214	125	564	5	2									
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578211	7578211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	TP53,NS,carcinoma,-1	TP53	NM_000546	exon6	c.G638A	p.R213Q	CTATGTCGAAAAG	.	90	57	76	0	.	70225	T	7578211	C	T	7578211	3	4	5	1	0	0	0	0	1	0	0	0	16378	884	31	1	656	1	TP53	17	7578211	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10		7578211	73616999	126	565											
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15642108	15642108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	TBC1D26	NM_178571	exon8	c.A461G	p.Q154R	CCCTGCAGAAACA	.	215	111	189	0	.	90	G	15642108	A	G	15642108	3	3	5	1	0	0	0	0	1	0	0	0	15613	188	7	2	483	2	TBC1D26	17	15642108	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	8063897	15642108	65553102	127	566											
MAPK7	5598	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	19285441	19285441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MAPK7	NM_002749	exon5	c.C1825T	p.P609S	CCTGGCCCTGTAG	.	124	43	111	1	.	1402	T	19285441	C	T	19285441	3	4	5	1	0	0	0	0	1	0	0	0	9282	623	22	3	1839	3	MAPK7	17	19285441	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	3643333	19285441	61909769	128	567											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29162318	29162318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ATAD5	NM_024857	exon2	c.T1219C	p.F407L	AAAGCATTTAGGC	.	152	55	103	0	.	93	C	29162318	T	C	29162318	3	2	5	1	0	0	0	0	1	0	0	0	1076	1493	52	2	1225	2	ATAD5	17	29162318	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	9876877	29162318	52032892	129	568											
IGFBP4	3487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	38600272	38600272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	IGFBP4	NM_001552	exon1	c.C285A	p.H95Q	GATGCACGGGCAA	.	22	8	17	0	.	522	A	38600272	C	A	38600272	3	1	5	1	0	0	0	0	1	0	0	0	7581	535	19	1	287	1	IGFBP4	17	38600272	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	9437954	38600272	42594938	130	569											
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42855379	42855379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ADAM11	NM_002390	exon24	c.T2130A	p.S710R	CTGCAGTATCCAT	.	62	29	40	0	.	227	A	42855379	T	A	42855379	3	1	5	1	0	0	0	0	1	0	0	0	235	1635	57	4	2224	4	ADAM11	17	42855379	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	4255107	42855379	38339831	131	570											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	71382609	71382609	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SDK2	NM_001144952	exon31	c.G4473A	p.S1491S	TGACTCCGACTCC	.	53	14	17	0	.	24	T	71382609	C	T	71382609	2	4	5	1	0	0	0	0	0	0	0	1	13969	639	23	1		1	SDK2	17	71382609	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	28527230	71382609	9812601	132	571											
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14542729	14542729	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	POTEC	NM_001137671	exon1	c.T417C	p.D139D	GTCCAGATCTTCT	.	906	360	327	0	.	3	G	14542729	A	G	14542729	2	3	5	1	0	0	0	0	0	0	0	1	12262	330	12	2		2	POTEC	18	14542729	Silent	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		14542729	63534519	133	572											
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55996342	55996342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	NEDD4L	NM_015277	exon10	c.G796C	p.G266R	TCGGAGGGCGGGG	.	63	28	57	0	.	658	C	55996342	G	C	55996342	3	2	5	1	0	0	0	0	1	0	0	0	10311	1232	43	4	862	4	NEDD4L	18	55996342	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	41453613	55996342	22080906	134	573											
ZCCHC2	54877	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60241883	60241883	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZCCHC2	NM_017742	exon13	c.T2569G	p.F857V	GGTAGTTTCCCAG	.	260	88	127	1	.	432	G	60241883	T	G	60241883	3	3	5	1	0	0	0	0	1	0	0	0	17584	1841	64	5	2619	5	ZCCHC2	18	60241883	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	4245541	60241883	17835365	135	574											
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	7687527	7687527	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	XAB2	NM_020196	exon11	c.C1392T	p.A464A	CCGGCGGGCAGGC	.	17	8	16	0	.	272	A	7687527	G	A	7687527	2	1	5	1	0	0	0	0	0	0	0	1	17415	1219	43	3		3	XAB2	19	7687527	Silent	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10		7687527	51441456	136	575											
MUC16	94025	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9057202	9057202	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MUC16	NM_024690	exon3	c.G30244T	p.E10082X	GTATTTCAACTGA	.	209	70	106	1	.	566	A	9057202	C	A	9057202	4	1	5	1	0	0	0	0	0	1	0	0	9973	835	29	3	13607	3	MUC16	19	9057202	Nonsense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	1369675	9057202	50071781	137	576											
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	12059506	12059506	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF700	NM_001271848	exon4	c.A676T	p.K226X	ACTTATAAATGTA	.	189	79	106	0	.	90	T	12059506	A	T	12059506	4	4	5	1	0	0	0	0	0	1	0	0	18101	363	13	4	681	4	ZNF700	19	12059506	Nonsense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	3002304	12059506	47069477	138	577											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	22156136	22156136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF208	NM_007153	exon4	c.C1700A	p.T567N	CTAAGGGTTGAGG	.	56	20	22	0	.	7	T	22156136	G	T	22156136	3	4	5	1	0	0	0	0	1	0	0	0	17763	1261	44	3	2146	3	ZNF208	19	22156136	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	10096630	22156136	36972847	139	578											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	30936253	30936254	+	Frame_Shift_Ins	INS	-	-	AAGT	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF536	NM_014717	exon2	c.1784_1785insAAGT	p.P595fs	ACCTGCCAAGTAA	.	70	12	52	0	.	144	AAGT	30936254	-	AAGT	30936253	7	5	5	1	0	1	1	0	0	0	0	0	17971	594	21	0	1786	0	ZNF536	19	30936253	Frame_Shift_Ins	INS	-	TCGA-BC-A10U-01A-11D-A12Z-10	8780117	30936253	28192730	140	579											
SHKBP1	92799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41089323	41089323	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SHKBP1	NM_138392	exon11	c.T980A	p.I327N	AGCCCATCACCAG	.	50	20	34	0	.	92	A	41089323	T	A	41089323	3	1	5	1	0	0	0	0	1	0	0	0	14284	1435	50	4	1022	4	SHKBP1	19	41089323	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	10153070	41089323	18039660	141	580											
CYP2A6	1548	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	41354534	41354534	+	Missense_Mutation	SNP	G	G	T	rs60563539		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CYP2A6	NM_000762	exon3	c.C478A	p.L160I	CCCGGAGGGCGTC	.	63	7	56	0	.	92	T	41354534	G	T	41354534	3	4	5	1	0	0	0	0	1	0	0	0	4162	1000	35	3	1034	3	CYP2A6	19	41354534	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	265211	41354534	17774449	142	581											
ZNF28	7576	hgsc.bcm.edu;bcgsc.ca	37	19	53303182	53303182	+	Missense_Mutation	SNP	T	T	C	rs75548544		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZNF28	NM_006969	exon4	c.A1916G	p.E639G	CCACACTCATTAC	.	249	11	99	0	.	91	C	53303182	T	C	53303182	3	2	5	1	0	0	0	0	1	0	0	0	17810	1551	54	2	244	2	ZNF28	19	53303182	Missense_Mutation	SNP	T	TCGA-BC-A10U-01A-11D-A12Z-10	11948648	53303182	5825801	143	582											
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53856410	53856410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	.	NM_138374	exon4	c.G2482A	p.E828K	AGTGGAGAGAAAC	.	197	96	109	0	.	.	A	53856410	G	A	53856410	3	1	5	1	0	0	0	0	1	0	0	0	18188	943	33	3	2492	3	ZNF845	19	53856410	Missense_Mutation	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	553228	53856410	5272573	144	583											
SSTR4	6754	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23017142	23017142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	SSTR4	NM_001052	exon1	c.A1022G	p.E341G	CTGAGGAGGAGCC	.	96	12	73	0	.	522	G	23017142	A	G	23017142	3	3	5	1	0	0	0	0	1	0	0	0	15199	304	11	2	1024	2	SSTR4	20	23017142	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10		23017142	40008378	145	584											
CST11	140880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23431159	23431159	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	CST11	NM_130794	exon3	c.G401C	p.S134T	CTGCAGCTTTTGT	.	148	64	91	0	.	90	G	23431159	C	G	23431159	3	3	5	1	0	0	0	0	1	0	0	0	3971	797	28	4	19	4	CST11	20	23431159	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	414017	23431159	39594361	146	585											
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42331511	42331511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	MYBL2	NM_002466	exon8	c.C1333G	p.P445A	AGCACACCTGTTA	.	124	39	70	0	.	415	G	42331511	C	G	42331511	3	3	5	1	0	0	0	0	1	0	0	0	10010	507	18	4	1363	4	MYBL2	20	42331511	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	18900352	42331511	20694009	147	586											
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56227217	56227217	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PMEPA1	NM_020182	exon4	c.G756T	p.P252P	GGAGGGCGGCCCA	.	46	20	43	0	.	227	A	56227217	C	A	56227217	2	1	5	1	0	0	0	0	0	0	0	1	12132	755	27	1		1	PMEPA1	20	56227217	Silent	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	13895706	56227217	6798303	148	587											
ZFX	7543	hgsc.bcm.edu;bcgsc.ca	37	X	24227055	24227104	+	Frame_Shift_Del	DEL	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	-	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ZFX	NM_003410	exon9	c.1132_1181del	p.378_394del	GGCACTGCAAGTG	.	65	18	107	0	.	132	-	24227104	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	-	24227055	7	5	5	1	0	1	0	1	0	0	0	0	17658	1319	46	0	1154	0	ZFX	23	24227055	Frame_Shift_Del	DEL	GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC	TCGA-BC-A10U-01A-11D-A12Z-10		24227055	131043505	149	588											
DRP2	1821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	100513348	100513348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	DRP2	NM_001939	exon22	c.C2441G	p.A814G	AGGCAGCTGAGGC	.	222	132	51	0	.	132	G	100513348	C	G	100513348	3	3	5	1	0	0	0	0	1	0	0	0	4764	797	28	4	2519	4	DRP2	23	100513348	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	76286293	100513348	54757212	150	589											
ACTRT1	139741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	127185963	127185963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	ACTRT1	NM_138289	exon1	c.G223A	p.E75K	CACGCTCAATGGG	.	322	215	56	0	.	133	T	127185963	C	T	127185963	3	4	5	1	0	0	0	0	1	0	0	0	218	835	29	3	911	3	ACTRT1	23	127185963	Missense_Mutation	SNP	C	TCGA-BC-A10U-01A-11D-A12Z-10	26672615	127185963	28084597	151	590											
PLXNB3	5365	ucsc.edu;bcgsc.ca	37	X	153039047	153039047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	PLXNB3	NM_001163257	exon20	c.A3227G	p.E1076G	GGCTGGAGGCTGA	.	102	24	33	1	.	130	G	153039047	A	G	153039047	3	3	5	1	0	0	0	0	1	0	0	0	12125	304	11	2	3346	2	PLXNB3	23	153039047	Missense_Mutation	SNP	A	TCGA-BC-A10U-01A-11D-A12Z-10	25853084	153039047	2231513	152	591											
BRCC3	79184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154299926	154299926	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A10U-01A-11D-A12Z-10	TCGA-BC-A10U-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a85cabff-e8dc-440a-90f5-4fca51c33dd9	cc5b70cb-4799-4d23-86d6-30f9aec7989a	.	BRCC3	NM_001018055	exon1	c.123+1G>A	.	GGGGAGGTGAGTA	.	146	42	18	0	.	706	A	154299926	G	A	154299926	5	1	5	1	0	0	0	0	0	0	1	0	1500	1275	44	3	126	3	BRCC3	23	154299926	Splice_Site	SNP	G	TCGA-BC-A10U-01A-11D-A12Z-10	1260879	154299926	970634	153	592											
CHD5	26038	hgsc.bcm.edu;bcgsc.ca	37	1	6188597	6188597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHD5	NM_015557	exon24	c.C3692T	p.A1231V	CTGGCGGCCAAGT	.	79	4	153	0	.	719	A	6188597	G	A	6188597	3	1	6	1	0	0	0	0	1	0	0	0	3328	1203	42	3	2244	3	CHD5	1	6188597	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10		6188597	243062024	1	593											
ENO1	2023	hgsc.bcm.edu;bcgsc.ca	37	1	8930511	8930511	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ENO1	NM_001428	exon4	c.G240A	p.K80K	TCCTACCTTGCTA	.	54	4	85	0	.	652	T	8930511	C	T	8930511	2	4	6	1	0	0	0	0	0	0	0	1	5121	695	24	3		3	ENO1	1	8930511	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	2741914	8930511	240320110	2	594											
HNRNPCL1	343069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12908011	12908011	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HNRNPCL1	NM_001013631	exon2	c.G132A	p.A44A	GCAGCCCGCAATT	.	301	60	495	0	.	68	T	12908011	C	T	12908011	2	4	6	1	0	0	0	0	0	0	0	1	7263	639	23	1		1	HNRNPCL1	1	12908011	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	3977500	12908011	236342610	3	595											
SPEN	23013	broad.mit.edu;ucsc.edu	37	1	16260812	16260812	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPEN	NM_015001	exon11	c.C8077T	p.L2693L	AACGTCCTGAAAG	.	21	3	54	0	.	298	T	16260812	C	T	16260812	2	4	6	1	0	0	0	0	0	0	0	1	15037	680	24	3		3	SPEN	1	16260812	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	3352801	16260812	232989809	4	596											
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19518865	19518865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBR4	NM_020765	exon11	c.A1211G	p.Q404R	AAATTCTGATAGT	.	64	4	114	0	.	612	C	19518865	T	C	19518865	3	2	6	1	0	0	0	0	1	0	0	0	16901	1580	55	2	14724	2	UBR4	1	19518865	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	3258053	19518865	229731756	5	597											
CNKSR1	10256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26514760	26514760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNKSR1	NM_006314	exon17	c.A1490G	p.Y497C	CCAAGTACCAGTC	.	78	42	118	0	.	846	G	26514760	A	G	26514760	3	3	6	1	0	0	0	0	1	0	0	0	3606	391	14	2	1556	2	CNKSR1	1	26514760	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	6995895	26514760	222735861	6	598											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27056354	27056354	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARID1A	NM_006015	exon2	c.G1350A	p.Q450Q	ACAGCAGGTAGAT	.	223	129	315	1	.	584	A	27056354	G	A	27056354	2	1	6	1	0	0	0	0	0	0	0	1	913	1014	35	3		3	ARID1A	1	27056354	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	541594	27056354	222194267	7	599											
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29641992	29641992	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRU	NM_005704	exon24	c.C3366T	p.S1122S	CTGCTCCCGGCGT	.	82	48	161	0	.	291	T	29641992	C	T	29641992	2	4	6	1	0	0	0	0	0	0	0	1	12813	610	22	3		3	PTPRU	1	29641992	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	2585638	29641992	219608629	8	600											
COL16A1	1307	hgsc.bcm.edu;bcgsc.ca	37	1	32149600	32149600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL16A1	NM_001856	exon33	c.A2288G	p.Q763R	CCGGGTTGGCCCT	.	105	5	164	0	.	98	C	32149600	T	C	32149600	3	2	6	1	0	0	0	0	1	0	0	0	3673	1812	63	2	2682	2	COL16A1	1	32149600	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	2507608	32149600	217101021	9	601											
KPNA6	23633	hgsc.bcm.edu;bcgsc.ca	37	1	32631794	32631794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KPNA6	NM_012316	exon11	c.T1079C	p.I360T	GGACTATTTCAAA	.	91	4	142	0	.	226	C	32631794	T	C	32631794	3	2	6	1	0	0	0	0	1	0	0	0	8434	1493	52	2	1121	2	KPNA6	1	32631794	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	482194	32631794	216618827	10	602											
IQCC	55721	hgsc.bcm.edu;bcgsc.ca	37	1	32673299	32673299	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IQCC	NM_001160042	exon5	c.G1257A	p.R419R	GTCCAGGACACAG	.	72	4	139	0	.	94	A	32673299	G	A	32673299	2	1	6	1	0	0	0	0	0	0	0	1	7804	1165	41	3		3	IQCC	1	32673299	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	41505	32673299	216577322	11	603											
AK2	204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33478978	33478978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AK2	NM_013411	exon6	c.G524A	p.R175Q	TCTGATCGACGGA	.	109	44	161	0	.	252	T	33478978	C	T	33478978	3	4	6	1	0	0	0	0	1	0	0	0	440	884	31	1	208	1	AK2	1	33478978	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	805679	33478978	215771643	12	604											
EPHA10	284656	hgsc.bcm.edu;bcgsc.ca	37	1	38186511	38186511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EPHA10	NM_001099439	exon12	c.A2152G	p.T718A	TCAAGGTGCTTCC	.	84	5	94	0	.	1246	C	38186511	T	C	38186511	3	2	6	1	0	0	0	0	1	0	0	0	5166	1696	59	2	898	2	EPHA10	1	38186511	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	4707533	38186511	211064110	13	605											
TTC4	7268	hgsc.bcm.edu;bcgsc.ca	37	1	55194027	55194027	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TTC4	NM_004623	exon6	c.A603G	p.E201E	AATTGAACAGAGG	.	165	7	72	0	.	90	G	55194027	A	G	55194027	2	3	6	1	0	0	0	0	0	0	0	1	16707	40	2	2		2	TTC4	1	55194027	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	17007516	55194027	194056594	14	606											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	103364262	103364262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL11A1	NM_080629	exon56	c.A4244T	p.K1415M	CCAGGCTTTCCTG	.	421	63	202	0	.	586	A	103364262	T	A	103364262	3	1	6	1	0	0	0	0	1	0	0	0	3667	1609	56	4	1260	4	COL11A1	1	103364262	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	48170235	103364262	145886359	15	607											
ADORA3	140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	112042758	112042758	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADORA3	NM_000677	exon2	c.T771A	p.G257G	TACCTCACCATTA	.	341	20	202	1	.	156	T	112042758	A	T	112042758	2	4	6	1	0	0	0	0	0	0	0	1	329	146	6	4		4	ADORA3	1	112042758	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	8678496	112042758	137207863	16	608											
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	120539927	120539927	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NOTCH2	NM_001200001	exon4	c.C444T	p.C148C	AGACAGGCAGGCA	.	614	406	317	1	.	1441	A	120539927	G	A	120539927	2	1	6	1	0	0	0	0	0	0	0	1	10548	1195	42	3		3	NOTCH2	1	120539927	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	8497169	120539927	128710694	17	609											
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145497479	145497479	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LIX1L	NM_153713	exon4	c.G684A	p.L228L	AATGTTGGAGTTC	.	537	73	205	0	.	91	A	145497479	G	A	145497479	2	1	6	1	0	0	0	0	0	0	0	1	8832	1339	47	3		3	LIX1L	1	145497479	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	24957552	145497479	103753142	18	610											
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145530929	145530929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ITGA10	NM_003637	exon7	c.G661T	p.D221Y	CTGGGAGATTTCC	.	482	23	175	0	.	231	T	145530929	G	T	145530929	3	4	6	1	0	0	0	0	1	0	0	0	7873	942	33	3	687	3	ITGA10	1	145530929	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	33450	145530929	103719692	19	611											
CTSK	1513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150778691	150778691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CTSK	NM_000396	exon3	c.A130G	p.I44V	GAGAGATTTCATC	.	341	258	133	1	.	91	C	150778691	T	C	150778691	3	2	6	1	0	0	0	0	1	0	0	0	4037	1493	52	2	883	2	CTSK	1	150778691	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	5247762	150778691	98471930	20	612											
LCE1F	353137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152748869	152748869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LCE1F	NM_178354	exon1	c.C22A	p.Q8K	AGCCAGCAGCAGT	.	841	640	260	0	.	68	A	152748869	C	A	152748869	3	1	6	1	0	0	0	0	1	0	0	0	8664	711	25	3	24	3	LCE1F	1	152748869	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	1970178	152748869	96501752	21	613											
TGFB2	7042	hgsc.bcm.edu;bcgsc.ca	37	1	218578636	218578636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TGFB2	NM_001135599	exon3	c.A556G	p.K186E	AACCCAAAAGCCA	.	61	4	135	0	.	710	G	218578636	A	G	218578636	3	3	6	1	0	0	0	0	1	0	0	0	15815	15	1	2	566	2	TGFB2	1	218578636	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	65829767	218578636	30671985	22	614											
ABCB10	23456	hgsc.bcm.edu;bcgsc.ca	37	1	229666086	229666086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCB10	NM_012089	exon8	c.C1505T	p.P502L	CGAGCTGGATAGG	.	90	5	119	0	.	153	A	229666086	G	A	229666086	3	1	6	1	0	0	0	0	1	0	0	0	41	1348	47	3	735	3	ABCB10	1	229666086	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	11087450	229666086	19584535	23	615											
FAM89A	375061	ucsc.edu;bcgsc.ca	37	1	231155652	231155652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM89A	NM_198552	exon2	c.T512C	p.V171A	GAGGAGACAGGCA	.	43	4	77	0	.	90	G	231155652	A	G	231155652	3	3	6	1	0	0	0	0	1	0	0	0	5647	275	10	2	46	2	FAM89A	1	231155652	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	1489566	231155652	18094969	24	616											
LYST	1130	hgsc.bcm.edu;bcgsc.ca	37	1	235922305	235922305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LYST	NM_000081	exon23	c.A6848G	p.E2283G	TTTGGCTCATAAC	.	85	5	126	0	.	143	C	235922305	T	C	235922305	3	2	6	1	0	0	0	0	1	0	0	0	9128	1551	54	2	4681	2	LYST	1	235922305	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	4766653	235922305	13328316	25	617											
ASAP2	8853	hgsc.bcm.edu;bcgsc.ca	37	2	9541497	9541497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASAP2	NM_003887	exon27	c.T2918C	p.V973A	TCATCGTGGACGG	.	148	7	138	0	.	90	C	9541497	T	C	9541497	3	2	6	1	0	0	0	0	1	0	0	0	1011	1696	59	2	3024	2	ASAP2	2	9541497	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10		9541497	233657876	26	618											
IAH1	285148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9628439	9628439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IAH1	NM_001039613	exon6	c.T728G	p.L243R	GTCTGCTGGGAGA	.	146	57	162	1	.	22	G	9628439	T	G	9628439	3	3	6	1	0	0	0	0	1	0	0	0	7471	1580	55	5	750	5	IAH1	2	9628439	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	86942	9628439	233570934	27	619											
E2F6	1876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11587894	11587894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	E2F6	NM_198256	exon6	c.A658G	p.I220V	CTGTGATAGAGTC	.	141	55	265	0	.	838	C	11587894	T	C	11587894	3	2	6	1	0	0	0	0	1	0	0	0	4871	1406	49	2	195	2	E2F6	2	11587894	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	1959455	11587894	231611479	28	620											
PUS10	150962	hgsc.bcm.edu;bcgsc.ca	37	2	61175283	61175283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PUS10	NM_144709	exon16	c.T1346C	p.L449P	CGGTGAAGGACGC	.	123	5	152	0	.	291	G	61175283	A	G	61175283	3	3	6	1	0	0	0	0	1	0	0	0	12831	72	3	2	255	2	PUS10	2	61175283	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	49587389	61175283	182024090	29	621											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61706090	61706090	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	XPO1	NM_003400	exon25	c.T3081G	p.G1027G	GTCTTCACCTGCA	.	189	59	241	0	.	229	C	61706090	A	C	61706090	2	2	6	1	0	0	0	0	0	0	0	1	17442	146	6	5		5	XPO1	2	61706090	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	530807	61706090	181493283	30	622											
ARHGAP25	9938	hgsc.bcm.edu;bcgsc.ca	37	2	69053300	69053300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGAP25	NM_001007231	exon11	c.A1915G	p.M639V	AAATCCATGAAGG	.	67	4	102	0	.	274	G	69053300	A	G	69053300	3	3	6	1	0	0	0	0	1	0	0	0	874	217	8	2	1997	2	ARHGAP25	2	69053300	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	7347210	69053300	174146073	31	623											
LOXL3	84695	hgsc.bcm.edu;bcgsc.ca	37	2	74763252	74763252	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LOXL3	NM_032603	exon7	c.A1119G	p.E373E	GCGAACTTCACTC	.	61	4	73	0	.	226	C	74763252	T	C	74763252	2	2	6	1	0	0	0	0	0	0	0	1	8901	1606	56	2		2	LOXL3	2	74763252	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	5709952	74763252	168436121	32	624											
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75113635	75113635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HK2	NM_000189	exon15	c.G2054T	p.C685F	ATGCCTGCTACAT	.	129	50	143	0	.	252	T	75113635	G	T	75113635	3	4	6	1	0	0	0	0	1	0	0	0	7191	1319	46	3	2112	3	HK2	2	75113635	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	350383	75113635	168085738	33	625											
TMEM131	23505	hgsc.bcm.edu;bcgsc.ca	37	2	98410005	98410005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM131	NM_015348	exon30	c.T3398C	p.L1133P	ACCAAAAGAAACA	.	104	7	107	0	.	74	G	98410005	A	G	98410005	3	3	6	1	0	0	0	0	1	0	0	0	16041	72	3	2	2301	2	TMEM131	2	98410005	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	23296370	98410005	144789368	34	626											
VWA3B	200403	hgsc.bcm.edu;bcgsc.ca	37	2	98750292	98750292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VWA3B	NM_144992	exon7	c.A878G	p.H293R	GATTCCACGCATT	.	78	4	89	0	.	139	G	98750292	A	G	98750292	3	3	6	1	0	0	0	0	1	0	0	0	17238	159	6	2	900	2	VWA3B	2	98750292	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	340287	98750292	144449081	35	627											
ST6GAL2	84620	hgsc.bcm.edu;bcgsc.ca	37	2	107459744	107459744	+	Silent	SNP	G	G	A	rs144265287	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ST6GAL2	NM_032528	exon2	c.C690T	p.T230T	GTTGGCGGTCAGG	.	51	4	31	0	G|1.000;C|0.000	191	A	107459744	G	A	107459744	2	1	6	1	0	0	0	0	0	0	0	1	15221	1103	39	1		1	ST6GAL2	2	107459744	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	8709452	107459744	135739629	36	628											
NPHP1	4867	hgsc.bcm.edu;bcgsc.ca	37	2	110881571	110881571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NPHP1	NM_000272	exon20	c.T1999C	p.S667P	GTGTGGAGTGGAG	.	66	4	105	0	.	92	G	110881571	A	G	110881571	3	3	6	1	0	0	0	0	1	0	0	0	10579	304	11	2	206	2	NPHP1	2	110881571	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	3421827	110881571	132317802	37	629											
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	122227423	122227423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CLASP1	NM_001207051	exon9	c.C826T	p.R276C	GCCGGCGGGTGGT	.	108	6	96	0	.	91	A	122227423	G	A	122227423	3	1	6	1	0	0	0	0	1	0	0	0	3454	1116	39	1	3970	1	CLASP1	2	122227423	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	11345852	122227423	120971950	38	630											
CYP27C1	339761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	127958787	127958787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CYP27C1	NM_001001665	exon3	c.A299C	p.Y100S	CCTGCATACATGG	.	88	31	94	0	.	90	G	127958787	T	G	127958787	3	3	6	1	0	0	0	0	1	0	0	0	4160	1406	49	5	843	5	CYP27C1	2	127958787	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	5731364	127958787	115240586	39	631											
GPR148	344561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131487061	131487061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPR148	NM_207364	exon1	c.G337A	p.G113S	CTGGGTGGCTGGG	.	140	7	166	0	.	91	A	131487061	G	A	131487061	3	1	6	1	0	0	0	0	1	0	0	0	6653	1348	47	3	339	3	GPR148	2	131487061	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	3528274	131487061	111712312	40	632											
FIGN	55137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164466794	164466794	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FIGN	NM_018086	exon3	c.G1548T	p.T516T	TAAGGCCGTCAGT	.	148	55	175	0	.	156	A	164466794	C	A	164466794	2	1	6	1	0	0	0	0	0	0	0	1	5891	639	23	1		1	FIGN	2	164466794	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	32979733	164466794	78732579	41	633											
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165552127	165552127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COBLL1	NM_014900	exon12	c.A1889G	p.N630S	GGTTGATTCAGTT	.	654	232	667	0	.	93	C	165552127	T	C	165552127	3	2	6	1	0	0	0	0	1	0	0	0	3654	1493	52	2	1623	2	COBLL1	2	165552127	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	1085333	165552127	77647246	42	634											
SCN3A	6328	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166003251	166003251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN3A	NM_001081676	exon12	c.C1669A	p.Q557K	ATACCTGATGAGG	.	354	148	418	2	.	141	T	166003251	G	T	166003251	3	4	6	1	0	0	0	0	1	0	0	0	13918	1299	45	3	4401	3	SCN3A	2	166003251	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	451124	166003251	77196122	43	635											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170031784	170031784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LRP2	NM_004525	exon55	c.G10687A	p.G3563S	AGTTGCCGTCACT	.	200	88	213	0	.	175	T	170031784	C	T	170031784	3	4	6	1	0	0	0	0	1	0	0	0	8956	652	23	1	3380	1	LRP2	2	170031784	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	4028533	170031784	73167589	44	636											
MYO3B	140469	hgsc.bcm.edu;bcgsc.ca	37	2	171323061	171323061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO3B	NM_001083615	exon25	c.C2854T	p.H952Y	CAGCCCCACTTTG	.	75	4	71	0	.	530	T	171323061	C	T	171323061	3	4	6	1	0	0	0	0	1	0	0	0	10077	594	21	3	2952	3	MYO3B	2	171323061	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	1291277	171323061	71876312	45	637											
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209217489	209217490	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	p.G1943S	TTCTACGGGAGAA	.	53	15	67	0	.	.	TC	209217490	GG	TC	209217489	3	4	6	1	0	0	0	0	1	0	0	0	11924	1116	39	1	5988	1	PIKFYVE	2	209217489	Missense_Mutation	DNP	GG	TCGA-BC-A10W-01A-11D-A12Z-10	37894428	209217489	33981884	46	638											
CPS1	1373	hgsc.bcm.edu;bcgsc.ca	37	2	211523405	211523405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPS1	NM_001122633	exon32	c.A3767G	p.D1256G	GAAATGATGTCTT	.	91	4	121	0	.	162	G	211523405	A	G	211523405	3	3	6	1	0	0	0	0	1	0	0	0	3823	333	12	2	3893	2	CPS1	2	211523405	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	2305916	211523405	31675968	47	639											
WDFY1	57590	hgsc.bcm.edu;bcgsc.ca	37	2	224746759	224746759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDFY1	NM_020830	exon10	c.T964C	p.C322R	TCCCGCAGACAGC	.	72	4	58	0	.	226	G	224746759	A	G	224746759	3	3	6	1	0	0	0	0	1	0	0	0	17265	188	7	2	280	2	WDFY1	2	224746759	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	13223354	224746759	18452614	48	640											
NMUR1	10316	hgsc.bcm.edu;bcgsc.ca	37	2	232392897	232392897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NMUR1	NM_006056	exon2	c.T835C	p.S279P	ATCTGGACCTGGC	.	74	5	86	0	.	523	G	232392897	A	G	232392897	3	3	6	1	0	0	0	0	1	0	0	0	10506	275	10	2	453	2	NMUR1	2	232392897	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	7646138	232392897	10806476	49	641											
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233344956	233344956	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ECEL1	NM_004826	exon18	c.G2235T	p.L745L	ACTGCCCAGCACC	.	102	49	143	0	.	90	A	233344956	C	A	233344956	2	1	6	1	0	0	0	0	0	0	0	1	4891	581	21	3		3	ECEL1	2	233344956	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	952059	233344956	9854417	50	642											
NEU2	4759	hgsc.bcm.edu;bcgsc.ca	37	2	233898881	233898881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEU2	NM_005383	exon2	c.A257G	p.N86S	CCATGAACCCATG	.	107	5	119	0	.	90	G	233898881	A	G	233898881	3	3	6	1	0	0	0	0	1	0	0	0	10342	43	2	2	263	2	NEU2	2	233898881	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	553925	233898881	9300492	51	643											
USP40	55230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234431822	234431822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USP40	NM_018218	exon15	c.A2228G	p.D743G	CTGTTATCATCAT	.	285	87	296	1	.	455	C	234431822	T	C	234431822	3	2	6	1	0	0	0	0	1	0	0	0	17069	1435	50	2	1583	2	USP40	2	234431822	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	532941	234431822	8767551	52	644											
HDLBP	3069	broad.mit.edu;ucsc.edu	37	2	242174540	242174540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HDLBP	NM_005336	exon23	c.A3140G	p.D1047G	ACCCGGTCCTCCT	.	45	6	51	0	.	290	C	242174540	T	C	242174540	3	2	6	1	0	0	0	0	1	0	0	0	7025	1667	58	2	690	2	HDLBP	2	242174540	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	7742718	242174540	1024833	53	645											
BHLHE40	8553	hgsc.bcm.edu;bcgsc.ca	37	3	5025019	5025019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BHLHE40	NM_003670	exon5	c.T881C	p.L294P	TGCAGCTTTCGGA	.	83	5	95	0	.	91	C	5025019	T	C	5025019	3	2	6	1	0	0	0	0	1	0	0	0	1423	1609	56	2	899	2	BHLHE40	3	5025019	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10		5025019	192997411	54	646											
FGD5	152273	hgsc.bcm.edu;bcgsc.ca	37	3	14862587	14862587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGD5	NM_152536	exon1	c.A2009G	p.H670R	AATTGCATGTGGA	.	123	5	148	0	.	231	G	14862587	A	G	14862587	3	3	6	1	0	0	0	0	1	0	0	0	5836	217	8	2	2011	2	FGD5	3	14862587	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	9837568	14862587	183159843	55	647											
CNOT10	25904	hgsc.bcm.edu;bcgsc.ca	37	3	32811404	32811404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNOT10	NM_001256742	exon18	c.A2210G	p.E737G	CTAAAGAGGTGCC	.	82	4	93	0	.	91	G	32811404	A	G	32811404	3	3	6	1	0	0	0	0	1	0	0	0	3618	304	11	2	2100	2	CNOT10	3	32811404	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	17948817	32811404	165211026	56	648											
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37053518	37053518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLH1	NM_000249	exon8	c.C605G	p.A202G	CAGTAGCTGATGT	.	178	56	209	0	.	2559	G	37053518	C	G	37053518	3	3	6	1	0	0	0	0	1	0	0	0	9617	797	28	4	635	4	MLH1	3	37053518	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	4242114	37053518	160968912	57	649											
SCN10A	6336	hgsc.bcm.edu;bcgsc.ca	37	3	38812863	38812863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN10A	NM_006514	exon4	c.T506C	p.L169S	TTTATCAAGGCTT	.	90	5	103	0	.	99	G	38812863	A	G	38812863	3	3	6	1	0	0	0	0	1	0	0	0	13912	131	5	2	5460	2	SCN10A	3	38812863	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	1759345	38812863	159209567	58	650											
LAMB2	3913	hgsc.bcm.edu;bcgsc.ca	37	3	49169091	49169091	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LAMB2	NM_002292	exon5	c.C525T	p.Y175Y	ATATCGGTACACA	.	92	5	68	0	.	93	A	49169091	G	A	49169091	2	1	6	1	0	0	0	0	0	0	0	1	8611	1256	44	3		3	LAMB2	3	49169091	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	10356228	49169091	148853339	59	651											
RASSF1	11186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50368106	50368106	+	Missense_Mutation	SNP	C	C	G	rs142957899	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RASSF1	NM_170714	exon6	c.G941C	p.R314P	TCCTCCCGCTGCA	.	60	12	79	0	C|1.000;T|0.000	417	G	50368106	C	G	50368106	3	3	6	1	0	0	0	0	1	0	0	0	13084	652	23	4	97	4	RASSF1	3	50368106	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	1199015	50368106	147654324	60	652											
DPPA2	151871	hgsc.bcm.edu;bcgsc.ca	37	3	109028179	109028179	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DPPA2	NM_138815	exon5	c.182-2A>G	.	ATGACCTAAGACA	.	124	5	210	0	.	93	C	109028179	T	C	109028179	5	2	6	1	0	0	0	0	0	0	1	0	4734	1536	53	2	736	2	DPPA2	3	109028179	Splice_Site	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	58660073	109028179	88994251	61	653											
WDR5B	54554	hgsc.bcm.edu;bcgsc.ca	37	3	122133628	122133628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR5B	NM_019069	exon1	c.G748A	p.G250S	TATGACCAGTGTA	.	114	5	169	0	.	93	T	122133628	C	T	122133628	3	4	6	1	0	0	0	0	1	0	0	0	17306	594	21	3	248	3	WDR5B	3	122133628	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	13105449	122133628	75888802	62	654											
HEG1	57493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124720775	124720775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HEG1	NM_020733	exon11	c.G3438C	p.R1146S	CTGCATCCTATCA	.	241	77	247	1	.	70	G	124720775	C	G	124720775	3	3	6	1	0	0	0	0	1	0	0	0	7044	854	30	4	735	4	HEG1	3	124720775	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	2587147	124720775	73301655	63	655											
PLXNA1	5361	hgsc.bcm.edu;bcgsc.ca	37	3	126739124	126739124	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLXNA1	NM_032242	exon20	c.G3975T	p.R1325R	CTACCGGACATAT	.	87	4	106	0	.	93	T	126739124	G	T	126739124	2	4	6	1	0	0	0	0	0	0	0	1	12119	1161	41	3		3	PLXNA1	3	126739124	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	2018349	126739124	71283306	64	656											
COL6A6	131873	hgsc.bcm.edu;bcgsc.ca	37	3	130285737	130285737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL6A6	NM_001102608	exon4	c.A1474G	p.K492E	ATCAATAAATACT	.	123	5	148	0	.	76	G	130285737	A	G	130285737	3	3	6	1	0	0	0	0	1	0	0	0	3703	363	13	2	1488	2	COL6A6	3	130285737	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	3546613	130285737	67736693	65	657											
PIK3R4	30849	hgsc.bcm.edu;bcgsc.ca	37	3	130435261	130435261	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PIK3R4	NM_014602	exon9	c.T2310C	p.L770L	CTTCAGAAGCTGT	.	113	6	134	0	.	1471	G	130435261	A	G	130435261	2	3	6	1	0	0	0	0	0	0	0	1	11921	233	9	2		2	PIK3R4	3	130435261	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	149524	130435261	67587169	66	658											
RAB6B	51560	hgsc.bcm.edu;bcgsc.ca	37	3	133560224	133560224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RAB6B	NM_016577	exon4	c.A194G	p.Q65R	CAGAGCTGCAGTC	.	84	4	83	0	.	228	C	133560224	T	C	133560224	3	2	6	1	0	0	0	0	1	0	0	0	12952	1580	55	2	452	2	RAB6B	3	133560224	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	3124963	133560224	64462206	67	659											
PPP2R3A	5523	hgsc.bcm.edu;bcgsc.ca	37	3	135721457	135721457	+	Missense_Mutation	SNP	T	T	C	rs148236440	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP2R3A	NM_002718	exon2	c.T1117C	p.S373P	AACAACTCCACAA	.	119	5	135	0	T|1.000;G|0.000	662	C	135721457	T	C	135721457	3	2	6	1	0	0	0	0	1	0	0	0	12388	1551	54	2	1119	2	PPP2R3A	3	135721457	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	2161233	135721457	62300973	68	660											
DBR1	51163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137880850	137880850	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DBR1	NM_016216	exon8	c.A1516T	p.T506S	CCTTGGTTAAGTC	.	540	194	602	0	.	90	A	137880850	T	A	137880850	3	1	6	1	0	0	0	0	1	0	0	0	4257	1725	60	4	122	4	DBR1	3	137880850	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	2159393	137880850	60141580	69	661											
PLOD2	5352	hgsc.bcm.edu;bcgsc.ca	37	3	145795696	145795696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLOD2	NM_182943	exon14	c.A1516G	p.K506E	AGTCTTTTTCCCT	.	57	4	41	0	.	92	C	145795696	T	C	145795696	3	2	6	1	0	0	0	0	1	0	0	0	12102	1850	64	2	788	2	PLOD2	3	145795696	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	7914846	145795696	52226734	70	662											
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171965470	171965470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FNDC3B	NM_001135095	exon5	c.C412T	p.H138Y	AACTCACACACGG	.	263	101	289	0	.	155	T	171965470	C	T	171965470	3	4	6	1	0	0	0	0	1	0	0	0	5970	478	17	3	426	3	FNDC3B	3	171965470	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	26169774	171965470	26056960	71	663											
GHSR	2693	hgsc.bcm.edu;bcgsc.ca	37	3	172163000	172163000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GHSR	NM_198407	exon2	c.T1052C	p.L351P	TCTTTCAGAGTGG	.	78	4	84	0	.	501	G	172163000	A	G	172163000	3	3	6	1	0	0	0	0	1	0	0	0	6375	188	7	2	52	2	GHSR	3	172163000	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	197530	172163000	25859430	72	664											
POLN	353497	hgsc.bcm.edu;bcgsc.ca	37	4	2210196	2210196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POLN	NM_181808	exon3	c.A232G	p.S78G	TCTGACTTCTTAA	.	59	4	78	0	.	539	C	2210196	T	C	2210196	3	2	6	1	0	0	0	0	1	0	0	0	12207	1609	56	2	2558	2	POLN	4	2210196	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10		2210196	188944080	73	665											
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	69097023	69097023	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMPRSS11B	NM_182502	exon7	c.584delC	p.A195fs	GGCCATGCCCCCT	.	244	76	187	0	.	91	-	69097023	G	-	69097023	7	5	6	1	0	1	0	1	0	0	0	0	16237	1319	46	0	682	0	TMPRSS11B	4	69097023	Frame_Shift_Del	DEL	G	TCGA-BC-A10W-01A-11D-A12Z-10	66886827	69097023	122057253	74	666											
C4orf22	255119	hgsc.bcm.edu;bcgsc.ca	37	4	81791253	81791254	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	C4orf22,upper_back,malignant_melanoma,0	C4orf22	NM_001206997	exon5	c.491_492insA	p.G164fs	TTACTGGAAAAAA	.	257	74	279	0	.	93	A	81791254	-	A	81791253	7	5	6	1	0	1	1	0	0	0	0	0	2255	1174	41	0	454	0	C4orf22	4	81791253	Frame_Shift_Ins	INS	-	TCGA-BC-A10W-01A-11D-A12Z-10	12694230	81791253	109363023	75	667											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	88035706	88035706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFF1	NM_001166693	exon12	c.C1721A	p.S574Y	AAAGCTCCAGCAA	.	62	17	76	0	.	289	A	88035706	C	A	88035706	3	1	6	1	0	0	0	0	1	0	0	0	356	855	30	3	1784	3	AFF1	4	88035706	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	6244453	88035706	103118570	76	668											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94006348	94006348	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GRID2	NM_001510	exon3	c.T447G	p.P149P	CCCACCTGTCTAC	.	136	53	193	0	.	159	G	94006348	T	G	94006348	2	3	6	1	0	0	0	0	0	0	0	1	6772	1567	55	5		5	GRID2	4	94006348	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	5970642	94006348	97147928	77	669											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104053878	104053878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CENPE	NM_001813	exon42	c.T6896A	p.V2299E	TTATTCACTTGAC	.	236	92	348	0	.	277	T	104053878	A	T	104053878	3	4	6	1	0	0	0	0	1	0	0	0	3230	159	6	4	1241	4	CENPE	4	104053878	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	10047530	104053878	87100398	78	670											
GAB1	2549	hgsc.bcm.edu;bcgsc.ca	37	4	144378870	144378870	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GAB1	NM_207123	exon7	c.T1623C	p.G541G	CCATGGTTTAGAG	.	94	5	107	0	.	1146	C	144378870	T	C	144378870	2	2	6	1	0	0	0	0	0	0	0	1	6148	1712	60	2		2	GAB1	4	144378870	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	40324992	144378870	46775406	79	671											
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148563937	148563937	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRMT10	NM_138364	exon11	c.2199+1G>A	.	CACTTACCTGAAA	.	78	4	128	0	.	91	T	148563937	C	T	148563937	5	4	6	1	0	0	0	0	0	0	1	0	12536	521	18	3	349	3	PRMT10	4	148563937	Splice_Site	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	4185067	148563937	42590339	80	672											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149073680	149073680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NR3C2	NM_000901	exon6	c.G2450T	p.R817I	TACGATCTCCAGC	.	234	78	308	0	.	154	A	149073680	C	A	149073680	3	1	6	1	0	0	0	0	1	0	0	0	10631	913	32	3	520	3	NR3C2	4	149073680	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	509743	149073680	42080596	81	673											
GALNTL6	442117	hgsc.bcm.edu;bcgsc.ca	37	4	173730521	173730521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GALNTL6	NM_001034845	exon6	c.A563G	p.K188R	ACCTGAAGGATAA	.	97	4	171	0	.	137	G	173730521	A	G	173730521	3	3	6	1	0	0	0	0	1	0	0	0	6225	72	3	2	581	2	GALNTL6	4	173730521	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	24656841	173730521	17423755	82	674											
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187541014	187541014	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAT1	NM_005245	exon10	c.G6726A	p.L2242L	AAAGTCCAGAGGA	.	76	4	168	0	.	34	T	187541014	C	T	187541014	2	4	6	1	0	0	0	0	0	0	0	1	5689	581	21	3		3	FAT1	4	187541014	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	13810493	187541014	3613262	83	675											
TRIO	7204	hgsc.bcm.edu;bcgsc.ca	37	5	14474101	14474101	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon40	c.5980-2A>G	.	AATTGTAGGGCTA	.	92	4	110	0	.	562	G	14474101	A	G	14474101	5	3	6	1	0	0	0	0	0	0	1	0	16549	434	15	2	6136	2	TRIO	5	14474101	Splice_Site	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10		14474101	166441159	84	676											
TRIO	7204	hgsc.bcm.edu;bcgsc.ca	37	5	14502746	14502746	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon54	c.T8391C	p.S2797S	CTACAGTGAAGTG	.	69	5	60	0	.	562	C	14502746	T	C	14502746	2	2	6	1	0	0	0	0	0	0	0	1	16549	1693	59	2		2	TRIO	5	14502746	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	28645	14502746	166412514	85	677											
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	32444759	32444759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFR	NM_016107	exon1	c.T6G	p.I2M	TATGGGAATCATG	.	326	36	223	0	.	90	C	32444759	A	C	32444759	3	2	6	1	0	0	0	0	1	0	0	0	17656	242	9	5	3298	5	ZFR	5	32444759	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	17942013	32444759	148470501	86	678											
CCNB1	891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68467214	68467214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCNB1	NM_031966	exon4	c.G481A	p.G161R	GAAGATGGAGCTG	.	286	88	237	0	.	650	A	68467214	G	A	68467214	3	1	6	1	0	0	0	0	1	0	0	0	2911	1349	47	3	495	3	CCNB1	5	68467214	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	36022455	68467214	112448046	87	679											
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82807955	82807955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VCAN	NM_004385	exon6	c.T782C	p.F261S	GTAAATTCACCTT	.	65	5	59	0	.	238	C	82807955	T	C	82807955	3	2	6	1	0	0	0	0	1	0	0	0	17135	1783	62	2	800	2	VCAN	5	82807955	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	14340741	82807955	98107305	88	680											
FTMT	94033	hgsc.bcm.edu;bcgsc.ca	37	5	121187671	121187671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FTMT	NM_177478	exon1	c.T13C	p.F5L	TCCTGCTTCAGGC	.	76	4	60	0	.	91	C	121187671	T	C	121187671	3	2	6	1	0	0	0	0	1	0	0	0	6085	1609	56	2	15	2	FTMT	5	121187671	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	38379716	121187671	59727589	89	681											
ADAMTS19	171019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129070694	129070694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADAMTS19	NM_133638	exon22	c.C3364A	p.H1122N	GGAAGACATGGAA	.	496	228	425	2	.	295	A	129070694	C	A	129070694	3	1	6	1	0	0	0	0	1	0	0	0	264	478	17	3	3450	3	ADAMTS19	5	129070694	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	7883023	129070694	51844566	90	682											
LEAP2	116842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132209684	132209685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LEAP2	NM_052971	exon2	c.100_101insG	p.R34fs	AAGAGAAGGCCAC	.	135	63	137	0	.	90	G	132209685	-	G	132209684	7	5	6	1	0	1	1	0	0	0	0	0	8711	63	3	0	106	0	LEAP2	5	132209684	Frame_Shift_Ins	INS	-	TCGA-BC-A10W-01A-11D-A12Z-10	3138990	132209684	48705576	91	683											
DND1	373863	hgsc.bcm.edu;bcgsc.ca	37	5	140052972	140052972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DND1	NM_194249	exon2	c.T26C	p.L9P	CACCACAGCTGAG	.	121	5	97	0	.	90	G	140052972	A	G	140052972	3	3	6	1	0	0	0	0	1	0	0	0	4666	202	7	2	1047	2	DND1	5	140052972	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	7843288	140052972	40862288	92	684											
PCDHGC3	5098	hgsc.bcm.edu;bcgsc.ca	37	5	140856091	140856091	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCDHGC3	NM_032402	exon1	c.T408C	p.P136P	TTTCCCTACCCAG	.	119	5	120	0	.	24	C	140856091	T	C	140856091	2	2	6	1	0	0	0	0	0	0	0	1	11569	1509	53	2		2	PCDHGC3	5	140856091	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	803119	140856091	40059169	93	685											
ATP10B	23120	hgsc.bcm.edu;bcgsc.ca	37	5	160063301	160063301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATP10B	NM_025153	exon11	c.A1016G	p.N339S	GTCCCATTCCAGA	.	85	4	65	0	.	72	C	160063301	T	C	160063301	3	2	6	1	0	0	0	0	1	0	0	0	1117	1493	52	2	3433	2	ATP10B	5	160063301	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	19207210	160063301	20851959	94	686											
GABRG2	2566	hgsc.bcm.edu;bcgsc.ca	37	5	161576259	161576259	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRG2	NM_198903	exon9	c.1188delG	p.L396fs	CACCTTGCATTAT	.	924	222	822	0	.	95	-	161576259	G	-	161576259	7	5	6	1	0	1	0	1	0	0	0	0	6172	1310	46	0	1222	0	GABRG2	5	161576259	Frame_Shift_Del	DEL	G	TCGA-BC-A10W-01A-11D-A12Z-10	1512958	161576259	19339001	95	687											
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161580269	161580269	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRG2	NM_198903	exon11	c.G1443A	p.R481R	TGGGAGGATACAT	.	718	200	589	0	.	95	A	161580269	G	A	161580269	2	1	6	1	0	0	0	0	0	0	0	1	6172	1165	41	3		3	GABRG2	5	161580269	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	4010	161580269	19334991	96	688											
TBC1D9B	23061	hgsc.bcm.edu;bcgsc.ca	37	5	179320450	179320450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TBC1D9B	NM_198868	exon5	c.T595C	p.W199R	CCACCCACTGCAC	.	72	4	64	0	.	154	G	179320450	A	G	179320450	3	3	6	1	0	0	0	0	1	0	0	0	15625	159	6	2	3229	2	TBC1D9B	5	179320450	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	17740181	179320450	1594810	97	689											
SLC22A23	63027	hgsc.bcm.edu;bcgsc.ca	37	6	3290023	3290023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC22A23	NM_015482	exon6	c.A1288G	p.N430D	CAATGTTCTTCCA	.	84	4	88	0	.	23	C	3290023	T	C	3290023	3	2	6	1	0	0	0	0	1	0	0	0	14452	1783	62	2	792	2	SLC22A23	6	3290023	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10		3290023	167825044	98	690											
MYLIP	29116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	16145168	16145168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYLIP	NM_013262	exon6	c.C868A	p.R290S	TATAGCCGTGACT	.	182	58	200	0	.	91	A	16145168	C	A	16145168	3	1	6	1	0	0	0	0	1	0	0	0	10055	652	23	1	890	1	MYLIP	6	16145168	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	12855145	16145168	154969899	99	691											
SCAND3	114821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28543241	28543241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCAND3	NM_052923	exon3	c.C1241G	p.P414R	TCCGTAGGCCTTT	.	83	36	186	0	.	91	C	28543241	G	C	28543241	3	2	6	1	0	0	0	0	1	0	0	0	13876	1000	35	4	2744	4	SCAND3	6	28543241	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	12398073	28543241	142571826	100	692											
TCF19	6941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31129627	31129627	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TCF19	NM_001077511	exon3	c.G642T	p.T214T	GACCACGCCTTCT	.	41	7	40	0	.	90	T	31129627	G	T	31129627	2	4	6	1	0	0	0	0	0	0	0	1	15686	1074	38	1		1	TCF19	6	31129627	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	2586386	31129627	139985440	101	693											
DOM3Z	1797	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31938796	31938796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DOM3Z	NM_005510	exon3	c.T485C	p.L162P	TCACTCAGGTATA	.	77	32	86	1	.	90	G	31938796	A	G	31938796	3	3	6	1	0	0	0	0	1	0	0	0	4705	188	7	2	725	2	DOM3Z	6	31938796	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	809169	31938796	139176271	102	694											
RGL2	5863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33261661	33261661	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RGL2	NM_004761	exon13	c.C1419G	p.L473L	ATTCTGGAGCCGT	.	95	37	105	0	.	662	C	33261661	G	C	33261661	2	2	6	1	0	0	0	0	0	0	0	1	13277	1161	41	4		4	RGL2	6	33261661	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	1322865	33261661	137853406	103	695											
SPATS1	221409	broad.mit.edu;bcgsc.ca	37	6	44328192	44328192	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPATS1	NM_145026	exon4	c.T297C	p.A99A	CACTGCTGACTTG	.	89	6	107	0	.	91	C	44328192	T	C	44328192	2	2	6	1	0	0	0	0	0	0	0	1	15017	1567	55	2		2	SPATS1	6	44328192	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	11066531	44328192	126786875	104	696											
TCF21	6943	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	134212868	134212868	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TCF21	NM_003206	exon2	c.G468A	p.V156V	TATGGTGGCCGGG	.	55	24	53	0	.	90	A	134212868	G	A	134212868	2	1	6	1	0	0	0	0	0	0	0	1	15688	1335	47	3		3	TCF21	6	134212868	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	89884676	134212868	36902199	105	697											
UTRN	7402	ucsc.edu;bcgsc.ca	37	6	145093056	145093056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UTRN	NM_007124	exon58	c.A8509G	p.T2837A	ACACAGACCACCT	.	46	5	59	0	.	95	G	145093056	A	G	145093056	3	3	6	1	0	0	0	0	1	0	0	0	17100	275	10	2	8739	2	UTRN	6	145093056	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	10880188	145093056	26022011	106	698											
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146720308	146720308	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GRM1	NM_000838	exon8	c.A2133T	p.S711S	TGCCTCAATTCTG	.	194	72	207	0	.	1080	T	146720308	A	T	146720308	2	4	6	1	0	0	0	0	0	0	0	1	6796	117	5	4		4	GRM1	6	146720308	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	1627252	146720308	24394759	107	699											
OPRM1	4988	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154412235	154412235	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OPRM1	NM_001145279	exon5	c.C1071A	p.V357V	GAGTGTCCGCATG	.	523	181	597	2	.	69	A	154412235	C	A	154412235	2	1	6	1	0	0	0	0	0	0	0	1	10887	842	30	3		3	OPRM1	6	154412235	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	7691927	154412235	16702832	108	700											
KIAA1324L	222223	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86569424	86569424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA1324L	NM_001142749	exon6	c.T749C	p.L250P	GATTTCAGCATTA	.	217	69	246	1	.	97	G	86569424	A	G	86569424	3	3	6	1	0	0	0	0	1	0	0	0	8224	188	7	2	2408	2	KIAA1324L	7	86569424	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10		86569424	72569239	109	701											
FAM180A	389558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135421867	135421867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM180A	NM_205855	exon2	c.G157A	p.E53K	CCACCTCCTCCAG	.	75	38	124	0	.	92	T	135421867	C	T	135421867	3	4	6	1	0	0	0	0	1	0	0	0	5507	864	30	3	372	3	FAM180A	7	135421867	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	48852443	135421867	23716796	110	702											
MLL3	58508	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151962208	151962208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLL3	NM_170606	exon8	c.C1099G	p.H367D	TTCCATGATAGTG	.	566	41	527	0	.	1398	C	151962208	G	C	151962208	3	2	6	1	0	0	0	0	1	0	0	0	9622	1290	45	4	13844	4	MLL3	7	151962208	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	16540341	151962208	7176455	111	703											
PTPRN2	5799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157369373	157369373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRN2	NM_002847	exon19	c.G2715T	p.Q905H	GTGGAACTGCGTC	.	142	44	148	0	.	295	A	157369373	C	A	157369373	3	1	6	1	0	0	0	0	1	0	0	0	12808	564	20	3	352	3	PTPRN2	7	157369373	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	5407165	157369373	1769290	112	704											
PPP1R3B	79660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8998473	8998473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP1R3B	NM_001201329	exon2	c.A689G	p.Y230C	ATCCTATAGTTCT	.	488	190	568	0	.	228	C	8998473	T	C	8998473	3	2	6	1	0	0	0	0	1	0	0	0	12372	1406	49	2	172	2	PPP1R3B	8	8998473	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10		8998473	137365549	113	705											
CHRNA2	1135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27320514	27320514	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHRNA2	NM_000742	exon6	c.T1446C	p.S482S	ATCCTCAGACCGC	.	117	26	120	0	.	91	G	27320514	A	G	27320514	2	3	6	1	0	0	0	0	0	0	0	1	3383	175	7	2		2	CHRNA2	8	27320514	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	18322041	27320514	119043508	114	706											
EXTL3	2137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28574774	28574774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXTL3	NM_001440	exon3	c.T1198C	p.C400R	TTCACCTGCAAAA	.	103	43	88	0	.	92	C	28574774	T	C	28574774	3	2	6	1	0	0	0	0	1	0	0	0	5327	1580	55	2	1200	2	EXTL3	8	28574774	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	1254260	28574774	117789248	115	707											
MAK16	84549	broad.mit.edu;bcgsc.ca	37	8	33355953	33355953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAK16	NM_032509	exon10	c.A709G	p.M237V	TAGGATATGGATA	.	90	5	96	0	.	69	G	33355953	A	G	33355953	3	3	6	1	0	0	0	0	1	0	0	0	9198	449	16	2	747	2	MAK16	8	33355953	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	4781179	33355953	113008069	116	708											
KCNB2	9312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73849371	73849371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNB2	NM_004770	exon3	c.T1781A	p.I594N	AGGTCATTGTGGA	.	134	94	66	0	.	158	A	73849371	T	A	73849371	3	1	6	1	0	0	0	0	1	0	0	0	8013	1493	52	4	1787	4	KCNB2	8	73849371	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	40493418	73849371	72514651	117	709											
TMEM64	169200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91643868	91643868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM64	NM_001008495	exon2	c.T863C	p.L288P	GAATTCAGAAGCT	.	307	53	141	0	.	90	G	91643868	A	G	91643868	3	3	6	1	0	0	0	0	1	0	0	0	16190	188	7	2	287	2	TMEM64	8	91643868	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	17794497	91643868	54720154	118	710											
GSDMD	79792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644902	144644902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSDMD	NM_001166237	exon14	c.T1283C	p.L428P	GGCTCCTGGGGAA	.	114	81	95	1	.	90	C	144644902	T	C	144644902	3	2	6	1	0	0	0	0	1	0	0	0	6819	1580	55	2	1321	2	GSDMD	8	144644902	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	53001034	144644902	1719120	119	711			1	1		2	2	12	T		6.466892e-05
GSDMD	79792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644913	144644913	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSDMD	NM_001166237	exon14	c.T1294A	p.W432R	AACAGCTGGGGCG	.	131	92	113	0	.	90	A	144644913	T	A	144644913	3	1	6	1	0	0	0	0	1	0	0	0	6819	1580	55	4	1332	4	GSDMD	8	144644913	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	11	144644913	1719109	120	712			1	1		2	2	12	T		6.466892e-05
NRBP2	340371	broad.mit.edu;bcgsc.ca	37	8	144919472	144919473	+	Splice_Site	INS	-	-	TGGCA	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NRBP2	NM_178564	exon14	c.1077-1->TGCCA	.	GAGTACCTGGCAT	.	118	20	75	0	.	354	TGGCA	144919473	-	TGGCA	144919472	8	5	6	1	0	1	1	0	0	0	1	0	10643	695	24	0	453	0	NRBP2	8	144919472	Splice_Site	INS	-	TCGA-BC-A10W-01A-11D-A12Z-10	274559	144919472	1444550	121	713											
GPT	2875	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145730179	145730179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPT	NM_005309	exon3	c.A278T	p.D93V	ACCCTGATCTTCT	.	229	22	175	0	.	91	T	145730179	A	T	145730179	3	4	6	1	0	0	0	0	1	0	0	0	6737	333	12	4	288	4	GPT	8	145730179	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	810707	145730179	633843	122	714											
JAK2	3717	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5126358	5126358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	JAK2	NM_004972	exon24	c.A3203G	p.D1068G	GCAATGACAAACA	.	138	45	139	0	.	75307	G	5126358	A	G	5126358	3	3	6	1	0	0	0	0	1	0	0	0	7938	275	10	2	3289	2	JAK2	9	5126358	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10		5126358	136087073	123	715											
RLN2	6019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5300172	5300172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RLN2	NM_134441	exon2	c.C484A	p.Q162K	AGAGTTGTCTCTT	.	315	108	385	1	.	90	T	5300172	G	T	5300172	3	4	6	1	0	0	0	0	1	0	0	0	13392	1386	48	3	77	3	RLN2	9	5300172	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	173814	5300172	135913259	124	716											
HAUS6	54801	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19070270	19070270	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HAUS6	NM_017645	exon12	c.T1323C	p.N441N	GCAACCATTTTCT	.	482	175	607	2	.	92	G	19070270	A	G	19070270	2	3	6	1	0	0	0	0	0	0	0	1	6970	214	8	2		2	HAUS6	9	19070270	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	13770098	19070270	122143161	125	717											
MUSK	4593	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	113563239	113563239	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUSK	NM_005592	exon14	c.G2581T	p.E861X	ATGTGTGAGAGGG	.	55	20	64	0	.	1379	T	113563239	G	T	113563239	4	4	6	1	0	0	0	0	0	1	0	0	9989	1291	45	3	2671	3	MUSK	9	113563239	Nonsense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	94492969	113563239	27650192	126	718											
NEBL	10529	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21074701	21074701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEBL	NM_006393	exon28	c.C3020T	p.A1007V	TAATTCGCTGGGA	.	95	31	107	0	.	92	A	21074701	G	A	21074701	3	1	6	1	0	0	0	0	1	0	0	0	10303	1087	38	1	28	1	NEBL	10	21074701	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10		21074701	114460046	127	719											
RTKN2	219790	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63999451	63999451	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RTKN2	NM_145307	exon5	c.G444T	p.V148V	TTTATCCACATTC	.	415	21	346	0	.	68	A	63999451	C	A	63999451	2	1	6	1	0	0	0	0	0	0	0	1	13723	581	21	3		3	RTKN2	10	63999451	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	42924750	63999451	71535296	128	720											
FBXW4	6468	ucsc.edu;bcgsc.ca	37	10	103436144	103436144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FBXW4	NM_022039	exon2	c.A310G	p.R104G	CCAGTCTCCAGTT	.	45	4	62	0	.	226	C	103436144	T	C	103436144	3	2	6	1	0	0	0	0	1	0	0	0	5767	1559	54	2	960	2	FBXW4	10	103436144	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	39436693	103436144	32098603	129	721											
PNLIP	5406	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118310666	118310666	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PNLIP	NM_000936	exon5	c.C381T	p.S127S	TGGCTCCCGAACT	.	119	63	265	0	.	92	T	118310666	C	T	118310666	2	4	6	1	0	0	0	0	0	0	0	1	12149	610	22	3		3	PNLIP	10	118310666	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	14874522	118310666	17224081	130	722											
TACC2	10579	ucsc.edu;bcgsc.ca	37	10	123842397	123842397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TACC2	NM_206862	exon4	c.G382A	p.A128T	GCAGCGGCACCTG	.	39	4	76	0	.	296	A	123842397	G	A	123842397	3	1	6	1	0	0	0	0	1	0	0	0	15499	1203	42	3	392	3	TACC2	10	123842397	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	5531731	123842397	11692350	131	723											
TRIM22	10346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5730736	5730736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIM22	NM_006074	exon8	c.G1355A	p.G452D	AGGCAGGCATTGT	.	321	83	314	0	.	90	A	5730736	G	A	5730736	3	1	6	1	0	0	0	0	1	0	0	0	16493	1203	42	3	1381	3	TRIM22	11	5730736	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10		5730736	129275780	132	724											
SNX15	29907	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64806100	64806100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SNX15	NM_013306	exon7	c.T721A	p.S241T	GTGGAGTCTGCAA	.	132	44	138	1	.	227	A	64806100	T	A	64806100	3	1	6	1	0	0	0	0	1	0	0	0	14886	1667	58	4	747	4	SNX15	11	64806100	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	59075364	64806100	70200416	133	725											
PC	5091	ucsc.edu;bcgsc.ca	37	11	66618558	66618558	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PC	NM_000920	exon16	c.T2176C	p.L726L	CGGCCAAGCCCAT	.	38	4	75	0	.	228	G	66618558	A	G	66618558	2	3	6	1	0	0	0	0	0	0	0	1	11497	69	3	2		2	PC	11	66618558	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	1812458	66618558	68387958	134	726											
ATM	472	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	108127032	108127032	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATM	NM_000051	exon14	c.G2215T	p.E739X	GAAGAGGAAGCAT	.	120	43	136	1	.	3419	T	108127032	G	T	108127032	4	4	6	1	0	0	0	0	0	1	0	0	1109	1175	41	3	2265	3	ATM	11	108127032	Nonsense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	41508474	108127032	26879484	135	727											
WNK1	65125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1009715	1009715	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WNK1	NM_001184985	exon26	c.A7302C	p.P2434P	CATCCCAGAGTCC	.	143	60	159	0	.	916	C	1009715	A	C	1009715	2	2	6	1	0	0	0	0	0	0	0	1	17374	175	7	5		5	WNK1	12	1009715	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10		1009715	132842180	136	728											
FGF6	2251	ucsc.edu;bcgsc.ca	37	12	4554699	4554699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGF6	NM_020996	exon1	c.G38A	p.R13Q	GCTCCCCGGGACA	.	29	4	24	0	.	659	T	4554699	C	T	4554699	3	4	6	1	0	0	0	0	1	0	0	0	5856	652	23	1	600	1	FGF6	12	4554699	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	3544984	4554699	129297196	137	729											
KRT4	3851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53202117	53202117	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KRT4	NM_002272	exon6	c.C1086A	p.I362I	CCTCTGGATCATC	.	273	42	290	0	.	96	T	53202117	G	T	53202117	2	4	6	1	0	0	0	0	0	0	0	1	8477	1164	41	3		3	KRT4	12	53202117	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	48647418	53202117	80649778	138	730											
PDX1	3651	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498632	28498632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDX1	NM_000209	exon2	c.G646A	p.G216R	GCTGTCGGGGGTG	.	34	8	41	0	.	514	A	28498632	G	A	28498632	3	1	6	1	0	0	0	0	1	0	0	0	11695	1116	39	1	652	1	PDX1	13	28498632	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10		28498632	86671246	139	731											
RB1	5925	broad.mit.edu;bcgsc.ca	37	13	48939032	48939033	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RB1	NM_000321	exon9	c.864_865insA	p.V288fs	TCAGGTGAAAAAT	.	230	114	465	0	.	3784	A	48939033	-	A	48939032	7	5	6	1	0	1	1	0	0	0	0	0	13098	1277	45	0	898	0	RB1	13	48939032	Frame_Shift_Ins	INS	-	TCGA-BC-A10W-01A-11D-A12Z-10	20440400	48939032	66230846	140	732											
ABCC4	10257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95887013	95887013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCC4	NM_005845	exon4	c.T382G	p.S128A	CCACAGAATCCAT	.	105	26	118	0	.	515	C	95887013	A	C	95887013	3	2	6	1	0	0	0	0	1	0	0	0	55	246	9	5	3756	5	ABCC4	13	95887013	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	46947981	95887013	19282865	141	733											
NYNRIN	57523	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24877718	24877718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NYNRIN	NM_025081	exon3	c.C842A	p.A281E	AGGCAGCAAACCA	.	39	10	31	0	.	3	A	24877718	C	A	24877718	3	1	6	1	0	0	0	0	1	0	0	0	10796	710	25	3	848	3	NYNRIN	14	24877718	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10		24877718	82471822	142	734											
KIAA0586	9786	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58937380	58937380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA0586	NM_001244189	exon19	c.T2651A	p.V884D	CTGATGTCCTTTC	.	166	25	190	0	.	23	A	58937380	T	A	58937380	3	1	6	1	0	0	0	0	1	0	0	0	8186	1667	58	4	2326	4	KIAA0586	14	58937380	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	34059662	58937380	48412160	143	735											
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64596547	64596547	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SYNE2	NM_182914	exon75	c.G14067A	p.V4689V	CCGAGTGGCCAAA	.	117	45	124	0	.	164	A	64596547	G	A	64596547	2	1	6	1	0	0	0	0	0	0	0	1	15443	1335	47	3		3	SYNE2	14	64596547	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	5659167	64596547	42752993	144	736											
FAM71D	161142	ucsc.edu;mdanderson.org	37	14	67671395	67671395	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM71D	NM_173526	exon5	c.G501A	p.W167X	TCAATGGGTGGCC	.	228	86	270	0	.	23	A	67671395	G	A	67671395	4	1	6	1	0	0	0	0	0	1	0	0	5610	1241	43	3	511	3	FAM71D	14	67671395	Nonsense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	3074848	67671395	39678145	145	737											
ZFYVE1	53349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73437723	73437723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFYVE1	NM_021260	exon12	c.A2201G	p.K734R	TGGTGCTTGGAGA	.	94	33	90	0	.	91	C	73437723	T	C	73437723	3	2	6	1	0	0	0	0	1	0	0	0	17660	1609	56	2	136	2	ZFYVE1	14	73437723	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	5766328	73437723	33911817	146	738											
SPTLC2	9517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78021725	78021725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPTLC2	NM_004863	exon8	c.T1094A	p.L365Q	GGATCCAGGCCAA	.	138	46	93	0	.	92	T	78021725	A	T	78021725	3	4	6	1	0	0	0	0	1	0	0	0	15123	188	7	4	614	4	SPTLC2	14	78021725	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	4584002	78021725	29327815	147	739											
RIN3	79890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93118696	93118696	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RIN3	NM_024832	exon6	c.G1302A	p.Q434Q	AGGCCAGGACACA	.	116	36	164	0	.	522	A	93118696	G	A	93118696	2	1	6	1	0	0	0	0	0	0	0	1	13373	991	35	3		3	RIN3	14	93118696	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	15096971	93118696	14230844	148	740											
PDZD9	255762	broad.mit.edu;bcgsc.ca	37	16	21995822	21995823	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDZD9	NM_173806	exon3	c.381_382insA	p.H127fs	ATATCCATGCCAG	.	401	132	501	0	.	91	T	21995823	-	T	21995822	7	5	6	1	0	1	1	0	0	0	0	0	11706	214	8	0	237	0	PDZD9	16	21995822	Frame_Shift_Ins	INS	-	TCGA-BC-A10W-01A-11D-A12Z-10		21995822	68358931	149	741											
ITGAM	3684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31284710	31284710	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ITGAM	NM_000632	exon8	c.C729T	p.N243N	CACCAACGGAGCC	.	102	18	106	0	.	226	T	31284710	C	T	31284710	2	4	6	1	0	0	0	0	0	0	0	1	7887	535	19	1		1	ITGAM	16	31284710	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	9288888	31284710	59070043	150	742											
RBL2	5934	ucsc.edu;bcgsc.ca	37	16	53504485	53504485	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RBL2	NM_005611	exon16	c.A2436G	p.P812P	TTCCCCAGGTGGC	.	41	4	107	0	.	841	G	53504485	A	G	53504485	2	3	6	1	0	0	0	0	0	0	0	1	13110	175	7	2		2	RBL2	16	53504485	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	22219775	53504485	36850268	151	743											
CCDC135	84229	ucsc.edu;bcgsc.ca	37	16	57758704	57758704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCDC135	NM_032269	exon12	c.A1715G	p.K572R	TCAAGAAGCTCAC	.	40	4	54	0	.	90	G	57758704	A	G	57758704	3	3	6	1	0	0	0	0	1	0	0	0	2769	72	3	2	1757	2	CCDC135	16	57758704	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	4254219	57758704	32596049	152	744											
PLCG2	5336	ucsc.edu;bcgsc.ca	37	16	81969981	81969981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLCG2	NM_002661	exon27	c.C3050T	p.A1017V	AGACGGCAGGTAA	.	34	4	43	0	.	892	T	81969981	C	T	81969981	3	4	6	1	0	0	0	0	1	0	0	0	12036	710	25	3	3152	3	PLCG2	16	81969981	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	24211277	81969981	8384772	153	745											
ALOX12	239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6905064	6905064	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALOX12	NM_000697	exon8	c.C1095T	p.H365H	CACTCACCTGGTG	.	73	19	95	0	.	226	T	6905064	C	T	6905064	2	4	6	1	0	0	0	0	0	0	0	1	536	506	18	3		3	ALOX12	17	6905064	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10		6905064	74290146	154	746											
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10369612	10369612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH4	NM_017533	exon4	c.G326T	p.R109L	GCGTAACGCTCTT	.	420	136	424	0	.	102	A	10369612	C	A	10369612	3	1	6	1	0	0	0	0	1	0	0	0	10037	536	19	1	5641	1	MYH4	17	10369612	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	3464548	10369612	70825598	155	747											
KRTAP4-11	653240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39274012	39274012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_033059	exon1	c.C556T	p.R186C	AGGGGCGGGGGCA	.	288	158	190	0	.	.	A	39274012	G	A	39274012	3	1	6	1	0	0	0	0	1	0	0	0	8549	1116	39	1	35	1	KRTAP4-11	17	39274012	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	28904400	39274012	41921198	156	748											
MTMR4	9110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56585600	56585600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MTMR4	NM_004687	exon8	c.C587T	p.P196L	CACACAGGAACCA	.	57	11	57	0	.	91	A	56585600	G	A	56585600	3	1	6	1	0	0	0	0	1	0	0	0	9946	1000	35	3	3048	3	MTMR4	17	56585600	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	17311588	56585600	24609610	157	749											
MRC2	9902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60765748	60765748	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MRC2	NM_006039	exon21	c.A3045T	p.T1015T	CATCACAAACCCC	.	108	48	123	0	.	117	T	60765748	A	T	60765748	2	4	6	1	0	0	0	0	0	0	0	1	9758	117	5	4		4	MRC2	17	60765748	Silent	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	4180148	60765748	20429462	158	750											
ACE	1636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61556398	61556398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACE	NM_000789	exon3	c.A448G	p.I150V	AGCAGGATCTACT	.	91	44	98	0	.	94	G	61556398	A	G	61556398	3	3	6	1	0	0	0	0	1	0	0	0	136	333	12	2	458	2	ACE	17	61556398	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	790650	61556398	19638812	159	751											
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72342619	72342619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIF19	NM_153209	exon8	c.A880C	p.K294Q	AGCAACAAGTACA	.	157	84	152	0	.	90	C	72342619	A	C	72342619	3	2	6	1	0	0	0	0	1	0	0	0	8282	131	5	5	910	5	KIF19	17	72342619	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	10786221	72342619	8852591	160	752											
QRICH2	84074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74287960	74287960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	QRICH2	NM_032134	exon4	c.G2350A	p.D784N	ATAAATCATGCAA	.	200	53	166	0	.	94	T	74287960	C	T	74287960	3	4	6	1	0	0	0	0	1	0	0	0	12880	826	29	3	2705	3	QRICH2	17	74287960	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	1945341	74287960	6907250	161	753											
AANAT	15	broad.mit.edu;bcgsc.ca	37	17	74465897	74465897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AANAT	NM_001166579	exon7	c.G604A	p.A202T	CGGGCCGCGCTCA	.	91	7	65	0	.	90	A	74465897	G	A	74465897	3	1	6	1	0	0	0	0	1	0	0	0	18	1087	38	1	618	1	AANAT	17	74465897	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	177937	74465897	6729313	162	754											
AFMID	125061	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	76198608	76198608	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFMID	NM_001145526	exon3	c.G183A	p.K61K	CAGGAAGAGCCTG	.	53	31	55	0	.	136	A	76198608	G	A	76198608	2	1	6	1	0	0	0	0	0	0	0	1	362	933	33	3		3	AFMID	17	76198608	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	1732711	76198608	4996602	163	755											
TXNL1	9352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54293689	54293689	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TXNL1	NM_004786	exon3	c.99-1G>T	.	CCACACCTGTTAG	.	227	73	215	0	.	90	A	54293689	C	A	54293689	5	1	6	1	0	0	0	0	0	0	1	0	16801	695	24	3	799	3	TXNL1	18	54293689	Splice_Site	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10		54293689	23783559	164	756											
ALPK2	115701	broad.mit.edu;bcgsc.ca	37	18	56246726	56246726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALPK2	NM_052947	exon4	c.G1282C	p.G428R	TCATCCCTGTTTG	.	130	9	149	0	.	765	G	56246726	C	G	56246726	3	3	6	1	0	0	0	0	1	0	0	0	545	681	24	4	5270	4	ALPK2	18	56246726	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	1953037	56246726	21830522	165	757											
SOCS6	9306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67992658	67992658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SOCS6	NM_004232	exon2	c.G754A	p.A252T	GTCTCTGCGGTTC	.	201	71	209	0	.	721	A	67992658	G	A	67992658	3	1	6	1	0	0	0	0	1	0	0	0	14918	1319	46	3	756	3	SOCS6	18	67992658	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	11745932	67992658	10084590	166	758											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062181	9062181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC16	NM_024690	exon3	c.G25265A	p.S8422N	GAGCTGCTGGTCT	.	123	70	255	0	.	566	T	9062181	C	T	9062181	3	4	6	1	0	0	0	0	1	0	0	0	9973	797	28	3	18586	3	MUC16	19	9062181	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10		9062181	50066802	167	759											
USHBP1	83878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17373479	17373479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USHBP1	NM_031941	exon4	c.G524A	p.R175H	GCCAGGCGAGCTG	.	26	17	73	0	.	91	T	17373479	C	T	17373479	3	4	6	1	0	0	0	0	1	0	0	0	17034	768	27	1	1627	1	USHBP1	19	17373479	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	8311298	17373479	41755504	168	760											
NFKBIB	4793	ucsc.edu;bcgsc.ca	37	19	39397949	39397949	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFKBIB	NM_002503	exon4	c.G708A	p.P236P	CAAACCGGTGAGC	.	37	4	45	0	.	658	A	39397949	G	A	39397949	2	1	6	1	0	0	0	0	0	0	0	1	10378	1130	39	1		1	NFKBIB	19	39397949	Silent	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	22024470	39397949	19731034	169	761											
ZFP112	7771	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44833097	44833097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFP112	NM_001083335	exon5	c.G1231A	p.E411K	TCTCTTCAGTGTG	.	153	50	223	0	.	95	T	44833097	C	T	44833097	3	4	6	1	0	0	0	0	1	0	0	0	17635	835	29	3	1514	3	ZFP112	19	44833097	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	5435148	44833097	14295886	170	762											
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50209501	50209501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPT1C	NM_001199752	exon12	c.C1174A	p.Q392K	TGGGCCCAGGTGC	.	67	15	49	0	.	92	A	50209501	C	A	50209501	3	1	6	1	0	0	0	0	1	0	0	0	3833	595	21	3	1212	3	CPT1C	19	50209501	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	5376404	50209501	8919482	171	763											
TSEN34	79042	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54697194	54697194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TSEN34	NM_024075	exon5	c.C910G	p.L304V	ACCTCCCTGCAAT	.	92	17	127	0	.	90	G	54697194	C	G	54697194	3	3	6	1	0	0	0	0	1	0	0	0	16610	680	24	4	924	4	TSEN34	19	54697194	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	4487693	54697194	4431789	172	764											
ASIP	434	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	32856830	32856830	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASIP	NM_001672	exon3	c.C256A	p.R86R	CGGCCCCGGACCC	.	51	26	42	0	.	90	A	32856830	C	A	32856830	2	1	6	1	0	0	0	0	0	0	0	1	1043	643	23	1		1	ASIP	20	32856830	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10		32856830	30168690	173	765											
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33337355	33337355	+	Silent	SNP	C	C	T	rs147990465		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NCOA6	NM_014071	exon9	c.G2643A	p.T881T	CGTTAGCGTGACA	.	363	138	448	1	C|1.000;T|0.000	292	T	33337355	C	T	33337355	2	4	6	1	0	0	0	0	0	0	0	1	10233	755	27	1		1	NCOA6	20	33337355	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	480525	33337355	29688165	174	766											
RPRD1B	58490	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36687860	36687860	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RPRD1B	NM_021215	exon5	c.G593C	p.R198P	CTGTCCGACAGAA	.	156	54	164	0	.	91	C	36687860	G	C	36687860	3	2	6	1	0	0	0	0	1	0	0	0	13616	1058	37	4	611	4	RPRD1B	20	36687860	Missense_Mutation	SNP	G	TCGA-BC-A10W-01A-11D-A12Z-10	3350505	36687860	26337660	175	767											
MOCS3	27304	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49576556	49576556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MOCS3	NM_014484	exon1	c.A1177T	p.I393F	GAAGCAATCTGGG	.	75	28	90	0	.	93	T	49576556	A	T	49576556	3	4	6	1	0	0	0	0	1	0	0	0	9692	101	4	4	1179	4	MOCS3	20	49576556	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	12888696	49576556	13448964	176	768											
MN1	4330	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28193394	28193394	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MN1	NM_002430	exon1	c.G3138A	p.S1046S	CTCGTCCGAGGCG	.	71	21	72	0	.	993	T	28193394	C	T	28193394	2	4	6	1	0	0	0	0	0	0	0	1	9673	639	23	1		1	MN1	22	28193394	Silent	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10		28193394	23111172	177	769											
TRIOBP	11078	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38121089	38121089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIOBP	NM_001039141	exon7	c.T2526A	p.D842E	ACGAGATAACCTC	.	255	99	331	0	.	136	A	38121089	T	A	38121089	3	1	6	1	0	0	0	0	1	0	0	0	16550	1403	49	4	2544	4	TRIOBP	22	38121089	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	9927695	38121089	13183477	178	770											
PANX2	56666	ucsc.edu;bcgsc.ca	37	22	50615985	50615985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PANX2	NM_052839	exon2	c.C844A	p.P282T	AAGCTCCCGTCCG	.	36	4	39	0	.	131	A	50615985	C	A	50615985	3	1	6	1	0	0	0	0	1	0	0	0	11421	623	22	3	850	3	PANX2	22	50615985	Missense_Mutation	SNP	C	TCGA-BC-A10W-01A-11D-A12Z-10	12494896	50615985	688581	179	771											
MAP7D2	256714	broad.mit.edu;bcgsc.ca	37	X	20074814	20074814	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP7D2	NM_001168466	exon4	c.A468G	p.G156G	TCCGGGTCCAATG	.	67	6	62	0	.	195	C	20074814	T	C	20074814	2	2	6	1	0	0	0	0	0	0	0	1	9268	1654	58	2		2	MAP7D2	23	20074814	Silent	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10		20074814	135195746	180	772											
FAM47A	158724	broad.mit.edu;bcgsc.ca	37	X	34148612	34148612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM47A	NM_203408	exon1	c.T1784C	p.V595A	TCAGAAACGCACT	.	147	9	113	1	.	134	G	34148612	A	G	34148612	3	3	6	1	0	0	0	0	1	0	0	0	5569	43	2	2	595	2	FAM47A	23	34148612	Missense_Mutation	SNP	A	TCGA-BC-A10W-01A-11D-A12Z-10	14073798	34148612	121121948	181	773											
ZDHHC9	51114	ucsc.edu;bcgsc.ca	37	X	128946713	128946713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZDHHC9	NM_001008222	exon7	c.A758G	p.N253S	GTCTGGTTGAGAG	.	42	4	43	0	.	131	C	128946713	T	C	128946713	3	2	6	1	0	0	0	0	1	0	0	0	17619	1725	60	2	352	2	ZDHHC9	23	128946713	Missense_Mutation	SNP	T	TCGA-BC-A10W-01A-11D-A12Z-10	94798101	128946713	26323847	182	774											
GDAP2	54834	broad.mit.edu;bcgsc.ca	37	1	118441791	118441791	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	GDAP2	NM_017686	exon7	c.A684G	p.K228K	CTCCTCTTTTAAT	.	147	6	183	0	.	92	C	118441791	T	C	118441791	2	2	7	1	0	0	0	0	0	0	0	1	6309	1606	56	2		2	GDAP2	1	118441791	Silent	SNP	T	TCGA-BC-A10X-01A-11D-A12Z-10		118441791	130808830	1	775											
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158435869	158435869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	OR10K1	NM_001004473	exon1	c.A518G	p.Q173R	CCAACCAGCTCCA	.	447	18	538	0	.	69	G	158435869	A	G	158435869	3	3	7	1	0	0	0	0	1	0	0	0	10913	188	7	2	520	2	OR10K1	1	158435869	Missense_Mutation	SNP	A	TCGA-BC-A10X-01A-11D-A12Z-10	39994078	158435869	90814752	2	776											
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu	37	1	247694952	247694952	+	Missense_Mutation	SNP	G	G	T	rs201468915	alternate_allele	TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	OR2C3	NM_198074	exon2	c.C862A	p.P288T	TAAGTGGGTTCAG	.	147	7	145	0	G|0.999;A|0.000	70	T	247694952	G	T	247694952	3	4	7	1	0	0	0	0	1	0	0	0	10993	1232	43	3	104	3	OR2C3	1	247694952	Missense_Mutation	SNP	G	TCGA-BC-A10X-01A-11D-A12Z-10	89259083	247694952	1555669	3	777											
OR2M3	127062	broad.mit.edu;bcgsc.ca	37	1	248366692	248366692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	OR2M3	NM_001004689	exon1	c.T323C	p.L108P	CACTGCTTGGCTC	.	372	23	453	2	.	70	C	248366692	T	C	248366692	3	2	7	1	0	0	0	0	1	0	0	0	11011	1609	56	2	325	2	OR2M3	1	248366692	Missense_Mutation	SNP	T	TCGA-BC-A10X-01A-11D-A12Z-10	671740	248366692	883929	4	778											
ERBB4	2066	broad.mit.edu;bcgsc.ca	37	2	212251837	212251837	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	ERBB4	NM_005235	exon27	c.A3222G	p.E1074E	TCCTTGTTCAGCA	.	247	11	330	2	.	1461	C	212251837	T	C	212251837	2	2	7	1	0	0	0	0	0	0	0	1	5209	1722	60	2		2	ERBB4	2	212251837	Silent	SNP	T	TCGA-BC-A10X-01A-11D-A12Z-10		212251837	30947536	5	779											
DOK7	285489	broad.mit.edu;bcgsc.ca	37	4	3487277	3487277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	DOK7	NM_173660	exon5	c.T544C	p.F182L	GGCGTCTTCTTCC	.	104	8	197	1	.	91	C	3487277	T	C	3487277	3	2	7	1	0	0	0	0	1	0	0	0	4702	1609	56	2	562	2	DOK7	4	3487277	Missense_Mutation	SNP	T	TCGA-BC-A10X-01A-11D-A12Z-10		3487277	187666999	6	780											
WDFY3	23001	broad.mit.edu;bcgsc.ca	37	4	85687056	85687056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	WDFY3	NM_014991	exon32	c.T5095C	p.S1699P	GAATAGACTGATT	.	124	6	149	1	.	93	G	85687056	A	G	85687056	3	3	7	1	0	0	0	0	1	0	0	0	17267	275	10	2	5633	2	WDFY3	4	85687056	Missense_Mutation	SNP	A	TCGA-BC-A10X-01A-11D-A12Z-10	82199779	85687056	105467220	7	781											
TTBK1	84630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43223474	43223474	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	TTBK1	NM_032538	exon9	c.G741A	p.Q247Q	GGAACAGGTAGGG	.	53	6	78	0	.	353	A	43223474	G	A	43223474	2	1	7	1	0	0	0	0	0	0	0	1	16673	991	35	3		3	TTBK1	6	43223474	Silent	SNP	G	TCGA-BC-A10X-01A-11D-A12Z-10		43223474	127891593	8	782											
BBS9	27241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33192380	33192380	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	BBS9	NM_014451	exon3	c.A180G	p.G60G	AACAGGAGATGGA	.	51	5	62	0	.	230	G	33192380	A	G	33192380	2	3	7	1	0	0	0	0	0	0	0	1	1342	291	11	2		2	BBS9	7	33192380	Silent	SNP	A	TCGA-BC-A10X-01A-11D-A12Z-10		33192380	125946283	9	783											
ARHGAP22	58504	ucsc.edu;bcgsc.ca	37	10	49667742	49667742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	ARHGAP22	NM_001256024	exon5	c.A692G	p.K231R	AGTGGCTTCTCCC	.	48	4	54	0	.	228	C	49667742	T	C	49667742	3	2	7	1	0	0	0	0	1	0	0	0	872	1609	56	2	1476	2	ARHGAP22	10	49667742	Missense_Mutation	SNP	T	TCGA-BC-A10X-01A-11D-A12Z-10		49667742	85867005	10	784											
KIAA0195	9772	broad.mit.edu;bcgsc.ca	37	17	73488633	73488633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	KIAA0195	NM_014738	exon15	c.T1675C	p.S559P	AGCCTGTCCCAGG	.	84	8	91	0	.	91	C	73488633	T	C	73488633	3	2	7	1	0	0	0	0	1	0	0	0	8160	1667	58	2	1729	2	KIAA0195	17	73488633	Missense_Mutation	SNP	T	TCGA-BC-A10X-01A-11D-A12Z-10		73488633	7706577	11	785											
FCGBP	8857	ucsc.edu;bcgsc.ca	37	19	40424149	40424149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	FCGBP	NM_003890	exon4	c.C2054T	p.A685V	CAGACAGCGAAGG	.	66	6	81	1	.	98	A	40424149	G	A	40424149	3	1	7	1	0	0	0	0	1	0	0	0	5778	971	34	3	14295	3	FCGBP	19	40424149	Missense_Mutation	SNP	G	TCGA-BC-A10X-01A-11D-A12Z-10		40424149	18704834	12	786											
EXOSC10	5394	ucsc.edu;bcgsc.ca	37	1	11158092	11158092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EXOSC10	NM_002685	exon2	c.A233G	p.D78G	AACCTGTCTCCCT	.	48	4	49	0	.	116	C	11158092	T	C	11158092	3	2	8	1	0	0	0	0	1	0	0	0	5314	1667	58	2	2520	2	EXOSC10	1	11158092	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10		11158092	238092529	1	787											
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32162651	32162651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL16A1	NM_001856	exon8	c.G777C	p.Q259H	ATTGCTCTGGGTG	.	305	136	273	0	.	98	G	32162651	C	G	32162651	3	3	8	1	0	0	0	0	1	0	0	0	3673	912	32	4	4293	4	COL16A1	1	32162651	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	21004559	32162651	217087970	2	788											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32196897	32196897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BAI2	NM_001703	exon29	c.T3884A	p.F1295Y	GGTGAGAAGCTGA	.	175	85	163	0	.	526	T	32196897	A	T	32196897	3	4	8	1	0	0	0	0	1	0	0	0	1299	246	9	4	893	4	BAI2	1	32196897	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	34246	32196897	217053724	3	789											
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	75602325	75602325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LHX8	NM_001001933	exon3	c.C56T	p.T19I	GGACTACAGCCCT	.	73	34	74	0	.	93	T	75602325	C	T	75602325	3	4	8	1	0	0	0	0	1	0	0	0	8776	478	17	3	62	3	LHX8	1	75602325	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	43405428	75602325	173648296	4	790											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151414583	151414583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	POGZ	NM_145796	exon2	c.A98G	p.Y33C	GAATTATAATCTT	.	265	87	207	0	.	93	C	151414583	T	C	151414583	3	2	8	1	0	0	0	0	1	0	0	0	12186	1406	49	2	4220	2	POGZ	1	151414583	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	75812258	151414583	97836038	5	791											
LCE1E	353135	broad.mit.edu;bcgsc.ca	37	1	152759943	152759944	+	Frame_Shift_Ins	INS	-	-	GTGGA	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LCE1E	NM_178353	exon2	c.168_169insGTGGA	p.S56fs	CAGCTCTGGGGGC	.	293	0	173	0	.	90	GTGGA	152759944	-	GTGGA	152759943	7	5	8	1	0	1	1	0	0	0	0	0	8663	1567	55	0	170	0	LCE1E	1	152759943	Frame_Shift_Ins	INS	-	TCGA-BC-A10Y-01A-11D-A12Z-10	1345360	152759943	96490678	6	792											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216496858	216496858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	USH2A	NM_007123	exon8	c.G1508A	p.R503K	CTGTGTCTGAGGT	.	359	104	217	1	.	115	T	216496858	C	T	216496858	3	4	8	1	0	0	0	0	1	0	0	0	17033	913	32	3	14374	3	USH2A	1	216496858	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	63736915	216496858	32753763	7	793											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1079315	1079315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SNTG2	NM_018968	exon2	c.G184T	p.V62L	GTCTGTGTGGGCG	.	90	36	110	0	.	136	T	1079315	G	T	1079315	3	4	8	1	0	0	0	0	1	0	0	0	14875	1377	48	3	190	3	SNTG2	2	1079315	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		1079315	242120058	8	794											
PIGF	5281	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46839477	46839477	+	Silent	SNP	T	T	A	rs1824050	byfrequency;alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PIGF	NM_002643	exon4	c.A327T	p.A109A	TTCCAATGCCAAC	.	323	152	502	2	T|0.797;C|0.203	226	A	46839477	T	A	46839477	2	1	8	1	0	0	0	0	0	0	0	1	11887	1451	51	4		4	PIGF	2	46839477	Silent	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	45760162	46839477	196359896	9	795											
VRK2	7444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	58373591	58373591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	VRK2	NM_001130480	exon12	c.G1164C	p.M388I	ATTGATGAACAAT	.	343	145	402	0	.	334	C	58373591	G	C	58373591	3	2	8	1	0	0	0	0	1	0	0	0	17217	1290	45	4	1206	4	VRK2	2	58373591	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	11534114	58373591	184825782	10	796											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80085161	80085161	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CTNNA2	NM_001164883	exon4	c.C321T	p.S107S	CGCCTCCTCCGAG	.	128	52	136	0	.	368	T	80085161	C	T	80085161	2	4	8	1	0	0	0	0	0	0	0	1	4013	668	24	3		3	CTNNA2	2	80085161	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	21711570	80085161	163114212	11	797											
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116510776	116510776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DPP10	NM_001178034	exon11	c.G989T	p.W330L	TTAAATGGGTAAG	.	196	73	299	0	.	142	T	116510776	G	T	116510776	3	4	8	1	0	0	0	0	1	0	0	0	4727	1357	47	3	1190	3	DPP10	2	116510776	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	36425615	116510776	126688597	12	798											
PROC	5624	ucsc.edu;bcgsc.ca	37	2	128184733	128184733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PROC	NM_000312	exon8	c.A731G	p.H244R	TCATCCACCCCTC	.	53	6	42	0	.	90	G	128184733	A	G	128184733	3	3	8	1	0	0	0	0	1	0	0	0	12545	159	6	2	757	2	PROC	2	128184733	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	11673957	128184733	115014640	13	799											
ZNF445	353274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44489484	44489484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF445	NM_181489	exon8	c.G1679T	p.R560L	GTTTCTCGGTGCA	.	92	12	114	0	.	91	A	44489484	C	A	44489484	3	1	8	1	0	0	0	0	1	0	0	0	17915	884	31	1	1420	1	ZNF445	3	44489484	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		44489484	153532946	14	800											
CXCR6	10663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45988614	45988614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CXCR6	NM_006564	exon2	c.T641C	p.I214T	CAGTCATAATCAA	.	216	88	219	1	.	658	C	45988614	T	C	45988614	3	2	8	1	0	0	0	0	1	0	0	0	4095	1406	49	2	643	2	CXCR6	3	45988614	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	1499130	45988614	152033816	15	801											
PLCXD2	257068	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	111432938	111432938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLCXD2	NM_001185106	exon3	c.G829T	p.G277C	GCCCGGGGCTTGG	.	68	33	48	1	.	227	T	111432938	G	T	111432938	3	4	8	1	0	0	0	0	1	0	0	0	12042	1232	43	3	839	3	PLCXD2	3	111432938	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	65444324	111432938	86589492	16	802											
UPK1B	7348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	118909118	118909118	+	Nonsense_Mutation	SNP	T	T	A	rs113148509	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UPK1B	NM_006952	exon4	c.T297A	p.Y99X	AGTATATGCCTTT	.	443	178	523	0	T|0.500;C|0.500	90	A	118909118	T	A	118909118	4	1	8	1	0	0	0	0	0	1	0	0	17005	1471	51	4	307	4	UPK1B	3	118909118	Nonsense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	7476180	118909118	79113312	17	803											
RHO	6010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129252455	129252455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RHO	NM_000539	exon5	c.G941A	p.R314Q	AGTTCCGGAACTG	.	68	33	33	0	.	90	A	129252455	G	A	129252455	3	1	8	1	0	0	0	0	1	0	0	0	13330	1116	39	1	959	1	RHO	3	129252455	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	10343337	129252455	68769975	18	804											
ABLIM2	84448	ucsc.edu;bcgsc.ca	37	4	7968764	7968764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABLIM2	NM_001130083	exon21	c.G1891A	p.A631T	AGAGGGCCAGGCG	.	30	4	41	0	.	47	T	7968764	C	T	7968764	3	4	8	1	0	0	0	0	1	0	0	0	95	739	26	3	50	3	ABLIM2	4	7968764	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		7968764	183185512	19	805											
UGT2B15	7366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69535667	69535667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UGT2B15	NM_001076	exon1	c.T670C	p.W224R	GAAACCAAAAGTC	.	184	147	429	2	.	46	G	69535667	A	G	69535667	3	3	8	1	0	0	0	0	1	0	0	0	16955	130	5	2	2563	2	UGT2B15	4	69535667	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	61566903	69535667	121618609	20	806											
NIPBL	25836	broad.mit.edu;bcgsc.ca	37	5	36976272	36976272	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NIPBL	NM_015384	exon9	c.G1263A	p.S421S	TTTGTCGCAGCAA	.	172	7	187	0	.	293	A	36976272	G	A	36976272	2	1	8	1	0	0	0	0	0	0	0	1	10428	1074	38	1		1	NIPBL	5	36976272	Silent	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		36976272	143938988	21	807											
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156899886	156899886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NIPAL4	NM_001099287	exon6	c.A1319G	p.K440R	AAGACAAGAACGT	.	82	34	80	0	.	68	G	156899886	A	G	156899886	3	3	8	1	0	0	0	0	1	0	0	0	10427	72	3	2	1341	2	NIPAL4	5	156899886	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	119923614	156899886	24015374	22	808											
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168119629	168119629	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLIT3	NM_001271946	exon29	c.C3180T	p.P1060P	GTCCAGGGGGATG	.	90	9	73	0	.	95	A	168119629	G	A	168119629	2	1	8	1	0	0	0	0	0	0	0	1	14741	1219	43	3		3	SLIT3	5	168119629	Silent	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	11219743	168119629	12795631	23	809											
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2959566	2959566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SERPINB6	NM_001271823	exon2	c.A58G	p.M20V	CATCCATGATGGC	.	155	65	130	0	.	226	C	2959566	T	C	2959566	3	2	8	1	0	0	0	0	1	0	0	0	14105	1464	51	2	1153	2	SERPINB6	6	2959566	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10		2959566	168155501	24	810											
PDGFA	5154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	550578	550578	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDGFA	NM_002607	exon4	c.G321A	p.R107R	CTGACTCCGAGGA	.	137	63	93	0	.	454	T	550578	C	T	550578	2	4	8	1	0	0	0	0	0	0	0	1	11657	842	30	3		3	PDGFA	7	550578	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		550578	158588085	25	811											
ISPD	729920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16298092	16298092	+	Missense_Mutation	SNP	A	A	T	rs199890239		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ISPD	NM_001101426	exon8	c.T1042A	p.F348I	CTTGAAAATCAGA	.	101	37	94	0	A|0.999;T|0.001	23	T	16298092	A	T	16298092	3	4	8	1	0	0	0	0	1	0	0	0	7864	14	1	4	325	4	ISPD	7	16298092	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	15747514	16298092	142840571	26	812											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82464992	82464992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PCLO	NM_014510	exon16	c.A14240G	p.Q4747R	GCATTCTGGACAA	.	180	84	162	0	.	29	C	82464992	T	C	82464992	3	2	8	1	0	0	0	0	1	0	0	0	11583	1580	55	2	1245	2	PCLO	7	82464992	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	66166900	82464992	76673671	27	813											
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107688358	107688358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LAMB4	NM_007356	exon28	c.A4321G	p.N1441D	CCTGATTTTTCAA	.	354	168	374	0	.	140	C	107688358	T	C	107688358	3	2	8	1	0	0	0	0	1	0	0	0	8613	1841	64	2	992	2	LAMB4	7	107688358	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	25223366	107688358	51450305	28	814											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107866734	107866734	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NRCAM	NM_001037132	exon6	c.C639T	p.R213R	GTCTTCGCGGGTG	.	47	21	62	0	.	156	A	107866734	G	A	107866734	2	1	8	1	0	0	0	0	0	0	0	1	10644	1074	38	1		1	NRCAM	7	107866734	Silent	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	178376	107866734	51271929	29	815											
SND1	27044	broad.mit.edu;bcgsc.ca	37	7	127528038	127528038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SND1	NM_014390	exon13	c.A1427G	p.Y476C	CACACTACGATGA	.	90	5	87	0	.	92	G	127528038	A	G	127528038	3	3	8	1	0	0	0	0	1	0	0	0	14844	391	14	2	1477	2	SND1	7	127528038	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	19661304	127528038	31610625	30	816											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151873592	151873592	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MLL3	NM_170606	exon38	c.T8946G	p.V2982V	AGAAAAAACATGG	.	187	76	191	0	.	1398	C	151873592	A	C	151873592	2	2	8	1	0	0	0	0	0	0	0	1	9622	1	1	5		5	MLL3	7	151873592	Silent	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	24345554	151873592	7265071	31	817											
YTHDF3	253943	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	64099147	64099147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	TGACTGGACTGAA	.	166	67	174	0	.	.	T	64099147	G	T	64099147	3	4	8	1	0	0	0	0	1	0	0	0	17497	1174	41	3	591	3	YTHDF3	8	64099147	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		64099147	82264875	32	818											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123965265	123965265	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZHX2	NM_014943	exon3	c.C1515A	p.S505S	CGAATCCCTTGCC	.	40	17	31	0	.	227	A	123965265	C	A	123965265	2	1	8	1	0	0	0	0	0	0	0	1	17673	610	22	3		3	ZHX2	8	123965265	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	59866118	123965265	22398757	33	819											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77416900	77416900	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TRPM6	NM_017662	exon16	c.G1923A	p.A641A	GATACACGCAATC	.	192	84	168	0	.	335	T	77416900	C	T	77416900	2	4	8	1	0	0	0	0	0	0	0	1	16587	523	19	1		1	TRPM6	9	77416900	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		77416900	63796531	34	820											
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	98268744	98268744	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PTCH1	NM_000264	exon2	c.G339T	p.A113A	TCCCACCGCGAAG	.	200	90	181	0	.	3532	A	98268744	C	A	98268744	2	1	8	1	0	0	0	0	0	0	0	1	12730	639	23	1		1	PTCH1	9	98268744	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	20851844	98268744	42944687	35	821											
OR1J2	26740	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125273978	125273978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	OR1J2	NM_054107	exon1	c.G898A	p.A300T	AAAGAGGCCCTTG	.	152	59	169	2	.	72	A	125273978	G	A	125273978	3	1	8	1	0	0	0	0	1	0	0	0	10960	1203	42	3	900	3	OR1J2	9	125273978	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	27005234	125273978	15939453	36	822											
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139234260	139234260	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPSM1	NM_015597	exon8	c.G1071A	p.Q357Q	CCTGCAGATCTCC	.	105	30	86	0	.	90	A	139234260	G	A	139234260	2	1	8	1	0	0	0	0	0	0	0	1	6734	933	33	3		3	GPSM1	9	139234260	Silent	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	13960282	139234260	1979171	37	823											
MAN1B1	11253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140001761	140001761	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAN1B1	NM_016219	exon11	c.C1626T	p.P542P	CCTGCCCGCCAGC	.	263	89	162	0	.	91	T	140001761	C	T	140001761	2	4	8	1	0	0	0	0	0	0	0	1	9212	639	23	1		1	MAN1B1	9	140001761	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	767501	140001761	1211670	38	824											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64952867	64952867	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	JMJD1C	NM_032776	exon16	c.C5907T	p.C1969C	AGGCATGCACAGA	.	144	63	165	0	.	275	A	64952867	G	A	64952867	2	1	8	1	0	0	0	0	0	0	0	1	7950	1311	46	3		3	JMJD1C	10	64952867	Silent	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		64952867	70581880	39	825											
HSPA12A	259217	ucsc.edu;bcgsc.ca	37	10	118451933	118451933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HSPA12A	NM_025015	exon6	c.A592G	p.R198G	CCCATCTGACATC	.	48	4	68	0	.	206	C	118451933	T	C	118451933	3	2	8	1	0	0	0	0	1	0	0	0	7404	1588	55	2	1463	2	HSPA12A	10	118451933	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	53499066	118451933	17082814	40	826											
KNDC1	85442	broad.mit.edu;bcgsc.ca	37	10	135033549	135033549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KNDC1	NM_152643	exon29	c.C4951T	p.H1651Y	GCCATGCACATCC	.	87	6	182	0	.	229	T	135033549	C	T	135033549	3	4	8	1	0	0	0	0	1	0	0	0	8426	710	25	3	5065	3	KNDC1	10	135033549	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	16581616	135033549	501198	41	827											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608299	608299	+	Missense_Mutation	SNP	C	C	T	rs200183606		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PHRF1	NM_020901	exon14	c.C2840T	p.S947F	GGGCGTCTTGCAG	.	34	14	21	0	C|0.996;T|0.004	22	T	608299	C	T	608299	3	4	8	1	0	0	0	0	1	0	0	0	11861	913	32	3	2890	3	PHRF1	11	608299	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		608299	134398217	42	828											
TH	7054	broad.mit.edu;bcgsc.ca	37	11	2185482	2185482	+	Missense_Mutation	SNP	G	G	A	rs201219944		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TH	NM_199292	exon14	c.C1568T	p.A523V	CTCAGCGCATGGG	.	61	4	64	0	G|0.996;A|0.005	90	A	2185482	G	A	2185482	3	1	8	1	0	0	0	0	1	0	0	0	15835	1087	38	1	22	1	TH	11	2185482	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	1577183	2185482	132821034	43	829											
KRT8	3856	ucsc.edu;bcgsc.ca	37	12	53294400	53294400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KRT8	NM_001256282	exon5	c.T746C	p.I249T	AAGTTGATCTCGT	.	41	5	51	0	.	92	G	53294400	A	G	53294400	3	3	8	1	0	0	0	0	1	0	0	0	8493	333	12	2	809	2	KRT8	12	53294400	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10		53294400	80557495	44	830											
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57032145	57032145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP5B	NM_001686	exon10	c.G1552A	p.A518T	CTTTTGCCACAGC	.	146	55	147	0	.	91	T	57032145	C	T	57032145	3	4	8	1	0	0	0	0	1	0	0	0	1148	739	26	3	41	3	ATP5B	12	57032145	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	3737745	57032145	76819750	45	831											
MYBPC1	4604	broad.mit.edu;bcgsc.ca	37	12	102067254	102067254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYBPC1	NM_206819	exon25	c.A2663T	p.D888V	AAATTGATAAGAA	.	138	6	156	1	.	94	T	102067254	A	T	102067254	3	4	8	1	0	0	0	0	1	0	0	0	10011	333	12	4	2819	4	MYBPC1	12	102067254	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	45035109	102067254	31784641	46	832											
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26153014	26153014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP8A2	NM_016529	exon21	c.A1844G	p.H615R	TATGCCATCTGGA	.	89	38	111	0	.	138	G	26153014	A	G	26153014	3	3	8	1	0	0	0	0	1	0	0	0	1193	217	8	2	1926	2	ATP8A2	13	26153014	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10		26153014	89016864	47	833											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32914712	32914712	+	Missense_Mutation	SNP	C	C	G	rs34309943	byfrequency;alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BRCA2	NM_000059	exon11	c.C6220G	p.H2074D	TCCTTACACAAAG	.	94	38	127	0	C|0.998;A|0.002	3153	G	32914712	C	G	32914712	3	3	8	1	0	0	0	0	1	0	0	0	1499	478	17	4	6258	4	BRCA2	13	32914712	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	6761698	32914712	82255166	48	834											
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	36049710	36049710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAB21L1	NM_005584	exon1	c.T566C	p.L189P	TGGGGAAGTGGCC	.	55	23	96	0	.	92	G	36049710	A	G	36049710	3	3	8	1	0	0	0	0	1	0	0	0	9141	72	3	2	517	2	MAB21L1	13	36049710	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	3134998	36049710	79120168	49	835											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	36385025	36385025	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DCLK1	NM_004734	exon12	c.C1635A	p.Y545X	GACTGTGTACAGG	.	252	110	202	0	.	826	T	36385025	G	T	36385025	4	4	8	1	0	0	0	0	0	1	0	0	4291	1372	48	3	582	3	DCLK1	13	36385025	Nonsense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	335315	36385025	78784853	50	836											
OR4M1	441670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20249191	20249191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	OR4M1	NM_001005500	exon1	c.G710A	p.R237K	CCAACAGGGCCAT	.	693	279	701	0	.	68	A	20249191	G	A	20249191	3	1	8	1	0	0	0	0	1	0	0	0	11075	1000	35	3	712	3	OR4M1	14	20249191	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		20249191	87100349	51	837											
POLE2	5427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50140883	50140883	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	POLE2	NM_001197331	exon5	c.T375C	p.D125D	TGCTTTATCTCTT	.	167	78	182	0	.	229	G	50140883	A	G	50140883	2	3	8	1	0	0	0	0	0	0	0	1	12197	446	16	2		2	POLE2	14	50140883	Silent	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	29891692	50140883	57208657	52	838											
PELI2	57161	ucsc.edu;bcgsc.ca	37	14	56746414	56746414	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PELI2	NM_021255	exon3	c.A228G	p.Q76Q	AGGTCAACACAGT	.	47	4	53	0	.	91	G	56746414	A	G	56746414	2	3	8	1	0	0	0	0	0	0	0	1	11722	40	2	2		2	PELI2	14	56746414	Silent	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	6605531	56746414	50603126	53	839											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67646366	67646366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPHN	NM_020806	exon22	c.A2151T	p.E717D	CCAAGAACCACTA	.	300	139	329	0	.	228	T	67646366	A	T	67646366	3	4	8	1	0	0	0	0	1	0	0	0	6610	40	2	4	2237	4	GPHN	14	67646366	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	10899952	67646366	39703174	54	840											
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91770248	91770248	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCDC88C	NM_001080414	exon20	c.G3432A	p.T1144T	CTTGGCCGTGTGG	.	130	51	100	0	.	25	T	91770248	C	T	91770248	2	4	8	1	0	0	0	0	0	0	0	1	2865	639	23	1		1	CCDC88C	14	91770248	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	24123882	91770248	15579292	55	841											
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29346830	29346830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	APBA2	NM_005503	exon3	c.C743T	p.A248V	GTGAGGCCAGCCC	.	134	60	126	0	.	90	T	29346830	C	T	29346830	3	4	8	1	0	0	0	0	1	0	0	0	757	739	26	3	745	3	APBA2	15	29346830	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		29346830	73184562	56	842											
SEMA7A	8482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74709733	74709733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SEMA7A	NM_003612	exon6	c.C604T	p.R202W	GGAACCGAGGGAT	.	208	45	127	1	.	153	A	74709733	G	A	74709733	3	1	8	1	0	0	0	0	1	0	0	0	14043	1057	37	1	1432	1	SEMA7A	15	74709733	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	45362903	74709733	27821659	57	843											
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	78472115	78472136	+	Frame_Shift_Del	DEL	TCAGGTCGCTGGTGGGAGAGGG	TCAGGTCGCTGGTGGGAGAGGG	-	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	TCAGGTCGCTGGTGGGAGAGGG	TCAGGTCGCTGGTGGGAGAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ACSBG1	NM_015162	exon10	c.1254_1261del	p.418_421del	AGGGCTTCAGGTC	.	162	14	125	0	.	91	-	78472136	TCAGGTCGCTGGTGGGAGAGGG	-	78472115	7	5	8	1	0	1	0	1	0	0	0	0	173	1792	62	0	933	0	ACSBG1	15	78472115	Frame_Shift_Del	DEL	TCAGGTCGCTGGTGGGAGAGGG	TCGA-BC-A10Y-01A-11D-A12Z-10	3762382	78472115	24059277	58	844											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93007604	93007604	+	Missense_Mutation	SNP	G	G	T	rs149476731		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ST8SIA2	NM_006011	exon6	c.G1117T	p.G373W	TGCGATGGGGCCA	.	86	26	45	0	G|1.000;T|0.000	90	T	93007604	G	T	93007604	3	4	8	1	0	0	0	0	1	0	0	0	15231	1348	47	3	1139	3	ST8SIA2	15	93007604	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	14535489	93007604	9523788	59	845											
CACNA1H	8912	ucsc.edu;bcgsc.ca	37	16	1270989	1270989	+	Missense_Mutation	SNP	G	G	A	rs150601404		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CACNA1H	NM_021098	exon35	c.G7057A	p.V2353M	GACCCCGTGTAGC	.	46	4	53	0	G|0.998;A|0.002	67	A	1270989	G	A	1270989	3	1	8	1	0	0	0	0	1	0	0	0	2545	1145	40	1	7191	1	CACNA1H	16	1270989	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		1270989	89083764	60	846											
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20826252	20826252	+	Missense_Mutation	SNP	G	G	T	rs201728796	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LOC81691	NM_030941	exon4	c.G255T	p.W85C	CAGCTGGTGCCAG	.	184	76	211	0	G|0.999;A|0.000	92	T	20826252	G	T	20826252	3	4	8	1	0	0	0	0	1	0	0	0	8890	1270	44	3	265	3	LOC81691	16	20826252	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	19555263	20826252	69528501	61	847											
METTL9	51108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21636425	21636425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	METTL9	NM_016025	exon4	c.A740G	p.Y247C	ATCCCTATGTGGA	.	139	46	169	0	.	91	G	21636425	A	G	21636425	3	3	8	1	0	0	0	0	1	0	0	0	9508	449	16	2	754	2	METTL9	16	21636425	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	810173	21636425	68718328	62	848											
MAZ	4150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29820038	29820038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAZ	NM_002383	exon4	c.C1255T	p.H419Y	CCTCACCATGTCT	.	85	36	104	0	.	136	T	29820038	C	T	29820038	3	4	8	1	0	0	0	0	1	0	0	0	9340	594	21	3	1269	3	MAZ	16	29820038	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	8183613	29820038	60534715	63	849											
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30594358	30594358	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF785	NM_152458	exon3	c.741delG	p.R247fs	AGCCCGCCTGTGG	.	70	31	68	0	.	91	-	30594358	C	-	30594358	7	5	8	1	0	1	0	1	0	0	0	0	18154	738	26	0	480	0	ZNF785	16	30594358	Frame_Shift_Del	DEL	C	TCGA-BC-A10Y-01A-11D-A12Z-10	774320	30594358	59760395	64	850											
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	84486812	84486812	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP2C2	NM_014861	exon19	c.A1900T	p.K634X	GTGGAGAAGGGCG	.	115	49	111	0	.	91	T	84486812	A	T	84486812	4	4	8	1	0	0	0	0	0	1	0	0	1144	247	9	4	1974	4	ATP2C2	16	84486812	Nonsense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	53892454	84486812	5867941	65	851											
COTL1	23406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84623756	84623756	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COTL1	NM_021149	exon3	c.C273T	p.R91R	TTTGGCGCGCTGC	.	139	67	120	0	.	226	A	84623756	G	A	84623756	2	1	8	1	0	0	0	0	0	0	0	1	3761	1074	38	1		1	COTL1	16	84623756	Silent	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10	136944	84623756	5730997	66	852											
KIF1C	10749	ucsc.edu;bcgsc.ca	37	17	4926003	4926003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIF1C	NM_006612	exon22	c.A2627G	p.Q876R	TGGCCCAGGTAGG	.	20	4	19	0	.	92	G	4926003	A	G	4926003	3	3	8	1	0	0	0	0	1	0	0	0	8285	202	7	2	2705	2	KIF1C	17	4926003	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10		4926003	76269207	67	853											
ULK2	9706	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19705133	19705133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ULK2	NM_001142610	exon16	c.G1398T	p.R466S	GGAGAGCCTTCGT	.	176	64	132	1	.	334	A	19705133	C	A	19705133	3	1	8	1	0	0	0	0	1	0	0	0	16973	738	26	3	1760	3	ULK2	17	19705133	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	14779130	19705133	61490077	68	854											
G6PC	2538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41063222	41063222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	G6PC	NM_000151	exon5	c.A853G	p.K285E	AGCTGCAAGGGGA	.	177	74	155	0	.	292	G	41063222	A	G	41063222	3	3	8	1	0	0	0	0	1	0	0	0	6143	131	5	2	871	2	G6PC	17	41063222	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	21358089	41063222	40131988	69	855											
GH1	2688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61994712	61994712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GH1	NM_000515	exon5	c.G611A	p.R204H	ACGATGCGCAGGA	.	611	163	413	1	.	522	T	61994712	C	T	61994712	3	4	8	1	0	0	0	0	1	0	0	0	6367	768	27	1	46	1	GH1	17	61994712	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	20931490	61994712	19200498	70	856											
EVPL	2125	broad.mit.edu;bcgsc.ca	37	17	74003349	74003349	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EVPL	NM_001988	exon22	c.G5937A	p.E1979E	ATCCTTCTCGTAG	.	210	11	142	0	.	93	T	74003349	C	T	74003349	2	4	8	1	0	0	0	0	0	0	0	1	5292	912	32	3		3	EVPL	17	74003349	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	12008637	74003349	7191861	71	857											
KHSRP	8570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6420136	6420136	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KHSRP	NM_003685	exon6	c.A495G	p.E165E	AATTTGTTCACCT	.	136	53	185	1	.	226	C	6420136	T	C	6420136	2	2	8	1	0	0	0	0	0	0	0	1	8151	1722	60	2		2	KHSRP	19	6420136	Silent	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10		6420136	52708847	72	858											
INSR	3643	broad.mit.edu;bcgsc.ca	37	19	7143085	7143085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	INSR	NM_000208	exon12	c.A2284G	p.R762G	GGGACCTGCGTTT	.	55	6	44	0	.	1381	C	7143085	T	C	7143085	3	2	8	1	0	0	0	0	1	0	0	0	7773	1579	55	2	1908	2	INSR	19	7143085	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	722949	7143085	51985898	73	859											
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10385686	10385686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ICAM1	NM_000201	exon2	c.A313G	p.T105A	GCTAAAACCTTCC	.	55	31	77	0	.	91	G	10385686	A	G	10385686	3	3	8	1	0	0	0	0	1	0	0	0	7479	43	2	2	319	2	ICAM1	19	10385686	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	3242601	10385686	48743297	74	860											
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19756558	19756558	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP13A1	NM_020410	exon25	c.G3402A	p.L1134L	CCACACCAGGGGC	.	85	53	81	0	.	138	T	19756558	C	T	19756558	2	4	8	1	0	0	0	0	0	0	0	1	1123	581	21	3		3	ATP13A1	19	19756558	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	9370872	19756558	39372425	75	861											
ATP13A1	57130	ucsc.edu;bcgsc.ca	37	19	19763412	19763412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP13A1	NM_020410	exon16	c.T2218C	p.S740P	GGTGGGACGCATT	.	39	5	66	1	.	138	G	19763412	A	G	19763412	3	3	8	1	0	0	0	0	1	0	0	0	1123	275	10	2	1440	2	ATP13A1	19	19763412	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	6854	19763412	39365571	76	862											
ECH1	1891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39322054	39322054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ECH1	NM_001398	exon2	c.A155G	p.D52G	CTGTGGTCTGGGG	.	60	27	62	1	.	91	C	39322054	T	C	39322054	3	2	8	1	0	0	0	0	1	0	0	0	4892	1667	58	2	867	2	ECH1	19	39322054	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	19558642	39322054	19806929	77	863											
PLD3	23646	ucsc.edu;bcgsc.ca	37	19	40880392	40880392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLD3	NM_012268	exon10	c.C884T	p.A295V	AGAGTGCGCCCCC	.	38	4	76	0	.	228	T	40880392	C	T	40880392	3	4	8	1	0	0	0	0	1	0	0	0	12047	768	27	1	914	1	PLD3	19	40880392	Missense_Mutation	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10	1558338	40880392	18248591	78	864											
NAPSA	9476	broad.mit.edu;bcgsc.ca	37	19	50864210	50864210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NAPSA	NM_004851	exon5	c.T656C	p.F219S	AGGTAAAAGGAGA	.	82	7	115	0	.	90	G	50864210	A	G	50864210	3	3	8	1	0	0	0	0	1	0	0	0	10166	14	1	2	626	2	NAPSA	19	50864210	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	9983818	50864210	8264773	79	865											
BRSK1	84446	ucsc.edu;bcgsc.ca	37	19	55805701	55805701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BRSK1	NM_032430	exon7	c.A614G	p.E205G	AGGGGGAAAAATA	.	39	4	77	0	.	759	G	55805701	A	G	55805701	3	3	8	1	0	0	0	0	1	0	0	0	1523	246	9	2	640	2	BRSK1	19	55805701	Missense_Mutation	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10	4941491	55805701	3323282	80	866											
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17596122	17596122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RRBP1	NM_004587	exon23	c.C2705T	p.A902V	GGGCCGGCTGTGC	.	99	43	97	0	.	92	A	17596122	G	A	17596122	3	1	8	1	0	0	0	0	1	0	0	0	13678	1203	42	3	240	3	RRBP1	20	17596122	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		17596122	45429398	81	867											
GDF5	8200	broad.mit.edu;mdanderson.org	37	20	34022500	34022500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GDF5	NM_000557	exon2	c.A713T	p.E238V	CGCAGCTCGGCCC	.	19	7	9	0	.	226	A	34022500	T	A	34022500	3	1	8	1	0	0	0	0	1	0	0	0	6316	1551	54	4	796	4	GDF5	20	34022500	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	16426378	34022500	29003020	82	868											
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45092191	45092191	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RRP1B	NM_015056	exon3	c.A216G	p.E72E	GCAGGAAGAGCTC	.	118	54	139	0	.	91	G	45092191	A	G	45092191	2	3	8	1	0	0	0	0	0	0	0	1	13688	69	3	2		2	RRP1B	21	45092191	Silent	SNP	A	TCGA-BC-A10Y-01A-11D-A12Z-10		45092191	3037704	83	869											
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19410152	19410152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAP3K15	NM_001001671	exon18	c.C2399T	p.A800V	ACACCCGCAAGAC	.	49	44	36	0	.	335	A	19410152	G	A	19410152	3	1	8	1	0	0	0	0	1	0	0	0	9249	1087	38	1	1590	1	MAP3K15	23	19410152	Missense_Mutation	SNP	G	TCGA-BC-A10Y-01A-11D-A12Z-10		19410152	135860408	84	870											
EIF2S3	1968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24084190	24084190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EIF2S3	NM_001415	exon8	c.T848C	p.I283T	GTAGTATCCTAAA	.	387	346	480	0	.	130	C	24084190	T	C	24084190	3	2	8	1	0	0	0	0	1	0	0	0	5011	1435	50	2	878	2	EIF2S3	23	24084190	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	4674038	24084190	131186370	85	871											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147744245	147744245	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AFF2	NM_002025	exon3	c.T997A	p.S333T	GCCAGTTCAAAGA	.	309	288	357	1	.	135	A	147744245	T	A	147744245	3	1	8	1	0	0	0	0	1	0	0	0	357	1783	62	4	1007	4	AFF2	23	147744245	Missense_Mutation	SNP	T	TCGA-BC-A10Y-01A-11D-A12Z-10	123660055	147744245	7526315	86	872											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4925278	4925278	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_032972	exon1	c.C414T	p.C138C	GCATTGCTTTTAT	.	684	496	736	1	.	.	T	4925278	C	T	4925278	2	4	8	1	0	0	0	0	0	0	0	1	11509	805	28	3		3	PCDH11Y	24	4925278	Silent	SNP	C	TCGA-BC-A10Y-01A-11D-A12Z-10		4925278	54448288	87	873											
MXRA8	54587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1289296	1289296	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MXRA8	NM_032348	exon9	c.A1235T	p.N412I	AGGATGTTGTTTT	.	83	43	80	0	.	90	A	1289296	T	A	1289296	3	1	9	1	0	0	0	0	1	0	0	0	10005	1725	60	4	101	4	MXRA8	1	1289296	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10		1289296	247961325	1	874											
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17991069	17991069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARHGEF10L	NM_018125	exon26	c.A2988C	p.E996D	CCTGGAAGCCACC	.	60	28	62	0	.	292	C	17991069	A	C	17991069	3	2	9	1	0	0	0	0	1	0	0	0	895	69	3	5	3086	5	ARHGEF10L	1	17991069	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	16701773	17991069	231259552	2	875											
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46500283	46500283	+	Silent	SNP	A	A	G	rs139679191	by1000genomes;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MAST2	NM_015112	exon29	c.A3942G	p.T1314T	GCACACACGGCCC	.	300	20	193	0	A|0.999;T|0.001	581	G	46500283	A	G	46500283	2	3	9	1	0	0	0	0	0	0	0	1	9325	146	6	2		2	MAST2	1	46500283	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	28509214	46500283	202750338	3	876											
TTC39A	22996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51761791	51761791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TTC39A	NM_001144832	exon13	c.G1117T	p.D373Y	TGTGGTCCTCCTT	.	60	19	41	0	.	23	A	51761791	C	A	51761791	3	1	9	1	0	0	0	0	1	0	0	0	16704	855	30	3	652	3	TTC39A	1	51761791	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	5261508	51761791	197488830	4	877											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79412048	79412048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ELTD1	NM_022159	exon3	c.A236G	p.E79G	CTTCCTTCTGTGT	.	401	197	443	0	.	24	C	79412048	T	C	79412048	3	2	9	1	0	0	0	0	1	0	0	0	5084	1783	62	2	1888	2	ELTD1	1	79412048	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	27650257	79412048	169838573	5	878											
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90486427	90486427	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF326	NM_182976	exon10	c.A1251G	p.L417L	TGCTTTACATAGT	.	501	221	601	0	.	91	G	90486427	A	G	90486427	2	3	9	1	0	0	0	0	0	0	0	1	17843	388	14	2		2	ZNF326	1	90486427	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	11074379	90486427	158764194	6	879											
FAM102B	284611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109148855	109148855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAM102B	NM_001010883	exon3	c.G269C	p.G90A	TAAAAGGTGGAAA	.	283	121	361	0	.	135	C	109148855	G	C	109148855	3	2	9	1	0	0	0	0	1	0	0	0	5383	1261	44	4	279	4	FAM102B	1	109148855	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	18662428	109148855	140101766	7	880											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201046155	201046155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CACNA1S	NM_000069	exon12	c.G1720A	p.A574T	GGAGGGCGAAGAT	.	646	400	420	1	.	94	T	201046155	C	T	201046155	3	4	9	1	0	0	0	0	1	0	0	0	2547	768	27	1	4033	1	CACNA1S	1	201046155	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	91897300	201046155	48204466	8	881											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207760833	207760833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CR1	NM_000651	exon34	c.C5633T	p.P1878L	GCCGTCCTGGGTA	.	534	241	647	1	.	93	T	207760833	C	T	207760833	3	4	9	1	0	0	0	0	1	0	0	0	3840	681	24	3	5767	3	CR1	1	207760833	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	6714678	207760833	41489788	9	882											
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236881238	236881238	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACTN2	NM_001103	exon2	c.C207A	p.G69G	GAATGGCCTTAAG	.	345	155	392	0	.	95	A	236881238	C	A	236881238	2	1	9	1	0	0	0	0	0	0	0	1	205	726	26	3		3	ACTN2	1	236881238	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	29120405	236881238	12369383	10	883											
ACP1	52	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	277266	277266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACP1	NM_007099	exon6	c.G439A	p.V147I	CAGTGTGTCAGGT	.	365	30	400	0	.	523	A	277266	G	A	277266	3	1	9	1	0	0	0	0	1	0	0	0	162	1377	48	3	616	3	ACP1	2	277266	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		277266	242922107	11	884											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21228142	21228157	+	Frame_Shift_Del	DEL	GGAGGGAATCTCAATG	GGAGGGAATCTCAATG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GGAGGGAATCTCAATG	GGAGGGAATCTCAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	APOB	NM_000384	exon26	c.11583_11598del	p.3861_3866del	CTTAATGGAGGGA	.	150	33	244	0	.	175	-	21228157	GGAGGGAATCTCAATG	-	21228142	7	5	9	1	0	1	0	1	0	0	0	0	785	1335	47	0	2109	0	APOB	2	21228142	Frame_Shift_Del	DEL	GGAGGGAATCTCAATG	TCGA-BC-A10Z-01A-11D-A12Z-10	20950876	21228142	221971231	12	885											
ALK	238	hgsc.bcm.edu;bcgsc.ca	37	2	29443612	29443612	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ALK	NM_004304	exon23	c.3605delG	p.G1202fs	AGGTCTCCCCCCG	.	115	42	89	0	.	3833	-	29443612	C	-	29443612	7	5	9	1	0	1	0	1	0	0	0	0	525	855	30	0	1285	0	ALK	2	29443612	Frame_Shift_Del	DEL	C	TCGA-BC-A10Z-01A-11D-A12Z-10	8215470	29443612	213755761	13	886											
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43813540	43813540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	THADA	NM_001083953	exon7	c.G533T	p.R178I	ACTTGCCTATTTT	.	475	258	513	1	.	228	A	43813540	C	A	43813540	3	1	9	1	0	0	0	0	1	0	0	0	15837	695	24	3	5456	3	THADA	2	43813540	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	14369928	43813540	199385833	14	887											
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63092103	63092103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EHBP1	NM_015252	exon10	c.A1100T	p.D367V	AATTGGATGAGTA	.	86	36	138	0	.	154	T	63092103	A	T	63092103	3	4	9	1	0	0	0	0	1	0	0	0	4975	333	12	4	1134	4	EHBP1	2	63092103	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	19278563	63092103	180107270	15	888											
CYP26B1	56603	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72371121	72371121	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CYP26B1	NM_019885	exon2	c.C426T	p.R142R	TACCTTGCGCTTG	.	185	76	257	2	.	92	A	72371121	G	A	72371121	2	1	9	1	0	0	0	0	0	0	0	1	4156	1306	46	3		3	CYP26B1	2	72371121	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	9279018	72371121	170828252	16	889											
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	108487515	108487515	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RGPD4	NM_182588	exon20	c.3055delG	p.G1019fs	ACTTCCGGTGACT	.	317	121	405	0	.	2	-	108487515	G	-	108487515	7	5	9	1	0	1	0	1	0	0	0	0	13288	1116	39	0	3133	0	RGPD4	2	108487515	Frame_Shift_Del	DEL	G	TCGA-BC-A10Z-01A-11D-A12Z-10	36116394	108487515	134711858	17	890											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	142567848	142567848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LRP1B	NM_018557	exon2	c.T205A	p.C69S	ACTCACAGGTATC	.	385	171	554	0	.	311	T	142567848	A	T	142567848	3	4	9	1	0	0	0	0	1	0	0	0	8955	202	7	4	13954	4	LRP1B	2	142567848	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	34080333	142567848	100631525	18	891											
EPC2	26122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149519486	149519486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EPC2	NM_015630	exon5	c.G802T	p.V268F	TTAGAAGTTGTGG	.	347	143	538	0	.	137	T	149519486	G	T	149519486	3	4	9	1	0	0	0	0	1	0	0	0	5161	1029	36	3	820	3	EPC2	2	149519486	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	6951638	149519486	93679887	19	892											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179463285	179463285	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TTN	NM_001267550	exon292	c.T57059A	p.V19020E	CCAGTTACTTTGG	.	380	156	408	0	.	636	T	179463285	A	T	179463285	3	4	9	1	0	0	0	0	1	0	0	0	16732	391	14	4	50918	4	TTN	2	179463285	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	29943799	179463285	63736088	20	893											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179470150	179470150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TTN	NM_001267550	exon279	c.G53872A	p.D17958N	CATCATCTTGTAT	.	181	88	245	0	.	636	T	179470150	C	T	179470150	3	4	9	1	0	0	0	0	1	0	0	0	16732	913	32	3	54157	3	TTN	2	179470150	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	6865	179470150	63729223	21	894											
MAP2	4133	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210559239	210559239	+	Missense_Mutation	SNP	C	C	A	rs184529696	alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MAP2	NM_002374	exon7	c.C2345A	p.A782E	CTCAAGCGGAGAT	.	87	45	110	0	C|0.994;T|0.006	591	A	210559239	C	A	210559239	3	1	9	1	0	0	0	0	1	0	0	0	9235	768	27	1	2359	1	MAP2	2	210559239	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	31089089	210559239	32640134	22	895											
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222347238	222347238	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EPHA4	NM_004438	exon5	c.C1152A	p.V384V	GTAGTGGACCCCA	.	293	133	363	0	.	1441	T	222347238	G	T	222347238	2	4	9	1	0	0	0	0	0	0	0	1	5169	1161	41	3		3	EPHA4	2	222347238	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	11787999	222347238	20852135	23	896											
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231079722	231079722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SP110	NM_001185015	exon4	c.C277G	p.Q93E	TAATTTGACTGAA	.	232	102	233	0	.	155	C	231079722	G	C	231079722	3	2	9	1	0	0	0	0	1	0	0	0	14961	1299	45	4	2014	4	SP110	2	231079722	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	8732484	231079722	12119651	24	897											
NGEF	25791	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233759548	233759548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NGEF	NM_019850	exon6	c.G907A	p.E303K	TCCGCTCGTTCTC	.	104	51	98	1	.	313	T	233759548	C	T	233759548	3	4	9	1	0	0	0	0	1	0	0	0	10394	893	31	1	1265	1	NGEF	2	233759548	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	2679826	233759548	9439825	25	898											
INPP5D	3635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234112784	234112784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	INPP5D	.	.	.	.	TGACCTGGGGAAG	.	116	37	85	0	.	652	A	234112784	G	A	234112784	3	1	9	1	0	0	0	0	1	0	0	0	7756	1335	47	3	2598	3	INPP5D	2	234112784	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	353236	234112784	9086589	26	899											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	430967	430967	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHL1	NM_001253388	exon18	c.C2280G	p.G760G	ACCAGGCCTAGAG	.	159	69	187	0	.	583	G	430967	C	G	430967	2	3	9	1	0	0	0	0	0	0	0	1	3349	726	26	4		4	CHL1	3	430967	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10		430967	197591463	27	900											
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	30827849	30827849	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GADL1	NM_207359	exon13	c.G1300T	p.E434X	TTACTTCCATCAG	.	292	127	313	0	.	90	A	30827849	C	A	30827849	4	1	9	1	0	0	0	0	0	1	0	0	6185	864	30	3	277	3	GADL1	3	30827849	Nonsense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	30396882	30827849	167194581	28	901											
GLB1	2720	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33099714	33099714	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GLB1	NM_000404	exon6	c.G600A	p.L200L	GAAGCGCAGGTAG	.	246	91	323	2	.	135	T	33099714	C	T	33099714	2	4	9	1	0	0	0	0	0	0	0	1	6427	697	25	3		3	GLB1	3	33099714	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	2271865	33099714	164922716	29	902											
STAC	6769	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36526541	36526541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	STAC	NM_003149	exon4	c.A562T	p.M188L	GAAGTTATGCCCA	.	310	134	352	2	.	94	T	36526541	A	T	36526541	3	4	9	1	0	0	0	0	1	0	0	0	15238	449	16	4	576	4	STAC	3	36526541	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	3426827	36526541	161495889	30	903											
KIF9	64147	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47307360	47307360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KIF9	NM_182902	exon8	c.G776A	p.G259D	ACTTGGCCCTCAG	.	144	66	192	1	.	91	T	47307360	C	T	47307360	3	4	9	1	0	0	0	0	1	0	0	0	8310	739	26	3	1652	3	KIF9	3	47307360	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	10780819	47307360	150715070	31	904											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	96706423	96706423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EPHA6	NM_001080448	exon3	c.T700G	p.F234V	ATTAAATTCAAGC	.	153	80	190	0	.	1561	G	96706423	T	G	96706423	3	3	9	1	0	0	0	0	1	0	0	0	5171	1493	52	5	710	5	EPHA6	3	96706423	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	49399063	96706423	101316007	32	905											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121251856	121251856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	POLQ	NM_199420	exon6	c.A941G	p.E314G	ATGGGCTCAAATT	.	495	228	523	0	.	664	C	121251856	T	C	121251856	3	2	9	1	0	0	0	0	1	0	0	0	12208	1551	54	2	6931	2	POLQ	3	121251856	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	24545433	121251856	76770574	33	906											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	173993239	173993239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NLGN1	NM_014932	exon5	c.781delG	p.G261fs	GGATCTGGTGCTG	.	324	96	266	0	.	231	-	173993239	G	-	173993239	7	5	9	1	0	1	0	1	0	0	0	0	10461	1348	47	0	791	0	NLGN1	3	173993239	Frame_Shift_Del	DEL	G	TCGA-BC-A10Z-01A-11D-A12Z-10	52741383	173993239	24029191	34	907											
SH3BP2	6452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2814128	2814128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SH3BP2	NM_001145855	exon1	c.G4A	p.A2T	CGCATGGCCTCCC	.	214	92	212	1	.	514	A	2814128	G	A	2814128	3	1	9	1	0	0	0	0	1	0	0	0	14245	1203	42	3	6	3	SH3BP2	4	2814128	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		2814128	188340148	35	908											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39928476	39928476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001100399	exon4	c.A348G	p.I116M	CAAAAATATGTCC	.	180	79	278	0	.	.	C	39928476	T	C	39928476	3	2	9	1	0	0	0	0	1	0	0	0	11691	1396	49	2	3818	2	PDS5A	4	39928476	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	37114348	39928476	151225800	36	909											
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	46060339	46060339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GABRG1	NM_173536	exon7	c.G811T	p.G271X	AATATCCCATTCT	.	445	192	645	1	.	92	A	46060339	C	A	46060339	4	1	9	1	0	0	0	0	0	1	0	0	6171	632	22	3	598	3	GABRG1	4	46060339	Nonsense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	6131863	46060339	145093937	37	910											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104079539	104079539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CENPE	NM_001813	exon24	c.A2951T	p.K984I	TTCGATTTTAGTG	.	90	77	279	0	.	277	A	104079539	T	A	104079539	3	1	9	1	0	0	0	0	1	0	0	0	3230	1841	64	4	5258	4	CENPE	4	104079539	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	58019200	104079539	87074737	38	911											
C4orf45	152940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159894436	159894437	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.P31N	ATTTTGGGTAAAT	.	223	100	270	0	.	.	TT	159894437	GG	TT	159894436	3	4	9	1	0	0	0	0	1	0	0	0	2273	1232	43	3	484	3	C4orf45	4	159894436	Missense_Mutation	DNP	GG	TCGA-BC-A10Z-01A-11D-A12Z-10	55814897	159894436	31259840	39	912											
ZFP42	132625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	188924570	188924570	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFP42	NM_174900	exon4	c.T609A	p.A203A	TAGAGCTGCCCTG	.	102	43	112	1	.	228	A	188924570	T	A	188924570	2	1	9	1	0	0	0	0	0	0	0	1	17647	1567	55	4		4	ZFP42	4	188924570	Silent	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	29030134	188924570	2229706	40	913											
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	14716830	14716832	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANKH	NM_054027	exon9	c.1124_1126del	p.375_376del	GGAAGAAGGAGAA	.	149	41	137	0	.	91	-	14716832	AGG	-	14716830	7	5	9	1	0	1	0	1	0	0	0	0	627	72	3	0	368	0	ANKH	5	14716830	In_Frame_Del	DEL	AGG	TCGA-BC-A10Z-01A-11D-A12Z-10		14716830	166198430	41	914											
HMGCS1	3157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43298941	43298941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HMGCS1	NM_001098272	exon3	c.G127T	p.D43Y	CAGCATCTACACC	.	143	73	152	1	.	90	A	43298941	C	A	43298941	3	1	9	1	0	0	0	0	1	0	0	0	7232	913	32	3	1471	3	HMGCS1	5	43298941	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	28582111	43298941	137616319	42	915											
WDR41	55255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76785371	76785371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	WDR41	NM_018268	exon2	c.A78T	p.E26D	TTGTTCTTCACCT	.	350	164	378	0	.	90	A	76785371	T	A	76785371	3	1	9	1	0	0	0	0	1	0	0	0	17291	1606	56	4	1349	4	WDR41	5	76785371	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	33486430	76785371	104129889	43	916											
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93076516	93076516	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_153216	exon1	c.G754C	p.D252H	CCACATCCTTCTG	.	250	117	257	0	.	.	G	93076516	C	G	93076516	3	3	9	1	0	0	0	0	1	0	0	0	12283	855	30	4	236	4	POU5F2	5	93076516	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	16291145	93076516	87838744	44	917											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96332096	96332096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LNPEP	NM_005575	exon7	c.G1410T	p.W470C	CCAGTGGTTTGGC	.	345	178	456	0	.	229	T	96332096	G	T	96332096	3	4	9	1	0	0	0	0	1	0	0	0	8864	1270	44	3	1436	3	LNPEP	5	96332096	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	3255580	96332096	84583164	45	918											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101816070	101816070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLCO6A1	NM_173488	exon2	c.G427C	p.E143Q	ACTTCTCAATGGT	.	368	169	486	0	.	96	G	101816070	C	G	101816070	3	3	9	1	0	0	0	0	1	0	0	0	14732	835	29	4	1780	4	SLCO6A1	5	101816070	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	5483974	101816070	79099190	46	919											
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112177044	112177044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	APC	NM_001127510	exon17	c.T5753C	p.I1918T	AGCCAATAAATCG	.	267	134	254	0	.	12026	C	112177044	T	C	112177044	3	2	9	1	0	0	0	0	1	0	0	0	763	1406	49	2	5811	2	APC	5	112177044	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	10360974	112177044	68738216	47	920											
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	120022379	120022380	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.R297I	TCTTGAGGAAGTC	.	25	15	20	0	.	.	TT	120022380	GG	TT	120022379	3	4	9	1	0	0	0	0	1	0	0	0	12589	1000	35	3	827	3	PRR16	5	120022379	Missense_Mutation	DNP	GG	TCGA-BC-A10Z-01A-11D-A12Z-10	7845335	120022379	60892881	48	921											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189077	139189077	+	Missense_Mutation	SNP	C	C	T	rs146689892		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PSD2	NM_032289	exon2	c.C52T	p.R18C	GCCACCCGTGACC	.	139	63	122	0	C|1.000;T|0.000	91	T	139189077	C	T	139189077	3	4	9	1	0	0	0	0	1	0	0	0	12647	652	23	1	54	1	PSD2	5	139189077	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	19166698	139189077	41726183	49	922											
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	147503432	147503432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPINK5	NM_001127699	exon27	c.2575delG	p.G859fs	AGAAATGGAAAGC	.	170	93	189	0	.	138	-	147503432	G	-	147503432	7	5	9	1	0	1	0	1	0	0	0	0	15061	1349	47	0	2681	0	SPINK5	5	147503432	Frame_Shift_Del	DEL	G	TCGA-BC-A10Z-01A-11D-A12Z-10	8314355	147503432	33411828	50	923											
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	158603765	158603765	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RNF145	NM_001199380	exon5	c.G586T	p.E196X	TTGTCTCCAAAGG	.	788	317	873	1	.	525	A	158603765	C	A	158603765	4	1	9	1	0	0	0	0	0	1	0	0	13447	864	30	3	1523	3	RNF145	5	158603765	Nonsense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	11100333	158603765	22311495	51	924	6	2									
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158603766	158603766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RNF145	NM_001199380	exon5	c.G585T	p.L195F	TGTCTCCAAAGGA	.	785	317	868	2	.	525	A	158603766	C	A	158603766	3	1	9	1	0	0	0	0	1	0	0	0	13447	593	21	3	1524	3	RNF145	5	158603766	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1	158603766	22311494	52	925	6	2									
GNB2L1	10399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180666567	180666567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GNB2L1	NM_006098	exon4	c.G445C	p.E149Q	CCCACTCTGAGTG	.	94	43	106	0	.	227	G	180666567	C	G	180666567	3	3	9	1	0	0	0	0	1	0	0	0	6518	922	32	4	528	4	GNB2L1	5	180666567	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	22062801	180666567	248693	53	926											
XPO5	57510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43517661	43517661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	XPO5	NM_020750	exon16	c.C1739T	p.S580F	GTGACAGATGAAA	.	264	160	181	0	.	271	A	43517661	G	A	43517661	3	1	9	1	0	0	0	0	1	0	0	0	17444	942	33	3	1943	3	XPO5	6	43517661	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		43517661	127597406	54	927											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	117198538	117198538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RFX6	NM_173560	exon1	c.G100A	p.G34S	CTCCTGGGCAAGG	.	108	49	63	0	.	93	A	117198538	G	A	117198538	3	1	9	1	0	0	0	0	1	0	0	0	13267	1232	43	3	102	3	RFX6	6	117198538	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	73680877	117198538	53916529	55	928											
IYD	389434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	150713484	150713493	+	Frame_Shift_Del	DEL	CAGCCCCGAG	CAGCCCCGAG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	CAGCCCCGAG	CAGCCCCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IYD	NM_001164695	exon3	c.374_383del	p.125_128del	CAGGAACAGCCCC	.	51	12	65	0	.	92	-	150713493	CAGCCCCGAG	-	150713484	7	5	9	1	0	1	0	1	0	0	0	0	7932	478	17	0	384	0	IYD	6	150713484	Frame_Shift_Del	DEL	CAGCCCCGAG	TCGA-BC-A10Z-01A-11D-A12Z-10	33514946	150713484	20401583	56	929											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152765606	152765606	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SYNE1	NM_033071	exon30	c.T3798A	p.A1266A	CTTCTCAGCTTGT	.	253	120	310	0	.	607	T	152765606	A	T	152765606	2	4	9	1	0	0	0	0	0	0	0	1	15442	175	7	4		4	SYNE1	6	152765606	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	2052122	152765606	18349461	57	930											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152765624	152765624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SYNE1	NM_033071	exon30	c.A3780C	p.K1260N	GACTTCTTTAGAG	.	255	115	329	0	.	607	G	152765624	T	G	152765624	3	3	9	1	0	0	0	0	1	0	0	0	15442	1606	56	5	23175	5	SYNE1	6	152765624	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	18	152765624	18349443	58	931											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2979547	2979547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CARD11	NM_032415	exon6	c.C700T	p.H234Y	ACCGGTGCTTTAG	.	350	169	422	0	.	870	A	2979547	G	A	2979547	3	1	9	1	0	0	0	0	1	0	0	0	2645	1319	46	3	2844	3	CARD11	7	2979547	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		2979547	156159116	59	932											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31683115	31683115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001257968	exon11	c.C2209A	p.Q737K	ATGACCCAGATGT	.	189	88	190	0	.	.	A	31683115	C	A	31683115	3	1	9	1	0	0	0	0	1	0	0	0	2764	595	21	3	2169	3	CCDC129	7	31683115	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	28703568	31683115	127455548	60	933											
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780403	37780403	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GPR141	NM_181791	exon1	c.T408C	p.S136S	TGCCAGTGCTGGC	.	258	108	314	1	.	93	C	37780403	T	C	37780403	2	2	9	1	0	0	0	0	0	0	0	1	6649	1693	59	2		2	GPR141	7	37780403	Silent	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	6097288	37780403	121358260	61	934											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44579861	44579861	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NPC1L1	NM_001101648	exon2	c.G135A	p.L45L	TCCAGACAGCTCT	.	122	49	115	0	.	94	T	44579861	C	T	44579861	2	4	9	1	0	0	0	0	0	0	0	1	10571	465	17	3		3	NPC1L1	7	44579861	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	6799458	44579861	114558802	62	935											
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71130478	71130478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	WBSCR17	NM_022479	exon7	c.G1163T	p.S388I	ATAATAGCAACAT	.	188	96	137	0	.	96	T	71130478	G	T	71130478	3	4	9	1	0	0	0	0	1	0	0	0	17261	971	34	3	1189	3	WBSCR17	7	71130478	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	26550617	71130478	88008185	63	936											
ZKSCAN5	23660	broad.mit.edu;bcgsc.ca	37	7	99129075	99129075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZKSCAN5	NM_145102	exon7	c.A1723G	p.K575E	GGGGAGAAACCAT	.	111	5	118	0	.	91	G	99129075	A	G	99129075	3	3	9	1	0	0	0	0	1	0	0	0	17687	247	9	2	1745	2	ZKSCAN5	7	99129075	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	27998597	99129075	60009588	64	937											
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99621227	99621227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZKSCAN1	NM_003439	exon2	c.A98T	p.E33V	AAGATGAGGAAGA	.	96	36	117	0	.	93	T	99621227	A	T	99621227	3	4	9	1	0	0	0	0	1	0	0	0	17683	304	11	4	100	4	ZKSCAN1	7	99621227	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	492152	99621227	59517436	65	938											
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107216972	107216972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DUS4L	NM_001270419	exon7	c.T641C	p.I214T	CTGTAATTGCTAA	.	179	81	246	0	.	90	C	107216972	T	C	107216972	3	2	9	1	0	0	0	0	1	0	0	0	4808	1493	52	2	659	2	DUS4L	7	107216972	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	7595745	107216972	51921691	66	939											
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131825502	131825502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PLXNA4	NM_020911	exon30	c.G5294A	p.S1765N	GTGATGCTGTTCT	.	165	75	216	2	.	91	T	131825502	C	T	131825502	3	4	9	1	0	0	0	0	1	0	0	0	12122	797	28	3	402	3	PLXNA4	7	131825502	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	24608530	131825502	27313161	67	940											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136699983	136699983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHRM2	NM_001006632	exon3	c.G371T	p.C124F	ACTTCTGTGTCAC	.	315	160	389	1	.	94	T	136699983	G	T	136699983	3	4	9	1	0	0	0	0	1	0	0	0	3377	1377	48	3	373	3	CHRM2	7	136699983	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	4874481	136699983	22438680	68	941											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141731507	141731507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MGAM	NM_004668	exon13	c.G1498T	p.D500Y	TTTCCTGATTATA	.	396	171	463	0	.	70	T	141731507	G	T	141731507	3	4	9	1	0	0	0	0	1	0	0	0	9541	1290	45	3	1544	3	MGAM	7	141731507	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	5031524	141731507	17407156	69	942											
DEFA4	1669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6793612	6793612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DEFA4	NM_001925	exon3	c.C224G	p.T75R	AGTTCTGTTCGCC	.	102	45	67	0	.	153	C	6793612	G	C	6793612	3	2	9	1	0	0	0	0	1	0	0	0	4391	1377	48	4	73	4	DEFA4	8	6793612	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		6793612	139570410	70	943											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8185737	8185737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001080826	exon4	c.C2555A	p.T852N	ACGTTGGTTTCCG	.	88	43	72	0	.	.	T	8185737	G	T	8185737	3	4	9	1	0	0	0	0	1	0	0	0	14210	1261	44	3	1661	3	SGK223	8	8185737	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	1392125	8185737	138178285	71	944											
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17794745	17794745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PCM1	NM_006197	exon4	c.G199A	p.E67K	TCTCCGGAGTCGT	.	281	130	345	0	.	742	A	17794745	G	A	17794745	3	1	9	1	0	0	0	0	1	0	0	0	11584	1175	41	3	205	3	PCM1	8	17794745	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	9609008	17794745	128569277	72	945											
SH2D4A	63898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	19250999	19250999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SH2D4A	NM_022071	exon9	c.G1219T	p.G407C	TTCCTGGGCGTGG	.	194	111	205	2	.	90	T	19250999	G	T	19250999	3	4	9	1	0	0	0	0	1	0	0	0	14235	1232	43	3	1299	3	SH2D4A	8	19250999	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	1456254	19250999	127113023	73	946											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25715971	25715971	+	Silent	SNP	G	G	A	rs151033193		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EBF2	NM_022659	exon14	c.C1392T	p.S464S	CGTGGAGCTGGAA	.	400	185	467	0	G|0.999;A|0.001	26	A	25715971	G	A	25715971	2	1	9	1	0	0	0	0	0	0	0	1	4881	962	34	3		3	EBF2	8	25715971	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	6464972	25715971	120648051	74	947											
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	36691164	36691173	+	Frame_Shift_Del	DEL	TGAGGCGAGT	TGAGGCGAGT	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	TGAGGCGAGT	TGAGGCGAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KCNU1	NM_001031836	exon11	c.1199_1208del	p.400_403del	AGGATCTGAGGCG	.	393	116	692	0	.	23	-	36691173	TGAGGCGAGT	-	36691164	7	5	9	1	0	1	0	1	0	0	0	0	8093	1580	55	0	1241	0	KCNU1	8	36691164	Frame_Shift_Del	DEL	TGAGGCGAGT	TCGA-BC-A10Z-01A-11D-A12Z-10	10975193	36691164	109672858	75	948											
BAG4	9530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38067967	38067967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BAG4	NM_004874	exon5	c.A1330C	p.K444Q	GTTTGTAAGATTC	.	135	54	168	0	.	228	C	38067967	A	C	38067967	3	2	9	1	0	0	0	0	1	0	0	0	1289	363	13	5	1348	5	BAG4	8	38067967	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	1376803	38067967	108296055	76	949											
AP3M2	10947	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	42022613	42022614	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AP3M2	NM_001134296	exon6	c.608_609insG	p.Q203fs	AGATCCAGGGGGT	.	308	138	299	0	.	90	G	42022614	-	G	42022613	7	5	9	1	0	1	1	0	0	0	0	0	748	188	7	0	622	0	AP3M2	8	42022613	Frame_Shift_Ins	INS	-	TCGA-BC-A10Z-01A-11D-A12Z-10	3954646	42022613	104341409	77	950											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68105731	68105731	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CSPP1	NM_024790	exon28	c.T3348G	p.G1116G	AGATGGTCTCTCT	.	213	98	221	0	.	138	G	68105731	T	G	68105731	2	3	9	1	0	0	0	0	0	0	0	1	3962	1654	58	5		5	CSPP1	8	68105731	Silent	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	26083118	68105731	78258291	78	951											
NECAB1	64168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91946573	91946573	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NECAB1	NM_022351	exon9	c.G735C	p.G245G	TGAAGGGAATACT	.	341	126	581	0	.	23	C	91946573	G	C	91946573	2	2	9	1	0	0	0	0	0	0	0	1	10304	1161	41	4		4	NECAB1	8	91946573	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	23840842	91946573	54417449	79	952											
ANKRD46	157567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101540171	101540171	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANKRD46	NM_001270378	exon4	c.C372T	p.V124V	TCGGATGACATCT	.	270	110	374	1	.	22	A	101540171	G	A	101540171	2	1	9	1	0	0	0	0	0	0	0	1	674	1277	45	3		3	ANKRD46	8	101540171	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	9593598	101540171	44823851	80	953											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113519006	113519006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CSMD3	NM_198123	exon29	c.C4809A	p.N1603K	AGGGAAGTTTGGT	.	280	112	290	0	.	1132	T	113519006	G	T	113519006	3	4	9	1	0	0	0	0	1	0	0	0	3946	1020	36	3	6486	3	CSMD3	8	113519006	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	11978835	113519006	32845016	81	954											
MYC	4609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	128751001	128751001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYC	NM_002467	exon2	c.G538A	p.A180T	AACCCCGCCCGCG	.	44	27	29	0	.	2002	A	128751001	G	A	128751001	3	1	9	1	0	0	0	0	1	0	0	0	10016	1087	38	1	544	1	MYC	8	128751001	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	15231995	128751001	17613021	82	955											
C8orf31	286122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144124680	144124680	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	C8orf31	NM_173687	exon3	c.186+1G>A	.	GCACTTGTAAGTT	.	29	11	27	0	.	91	A	144124680	G	A	144124680	5	1	9	1	0	0	0	0	0	0	1	0	2420	1391	48	3	193	3	C8orf31	8	144124680	Splice_Site	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	15373679	144124680	2239342	83	956											
RHPN1	114822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144460480	144460480	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RHPN1	NM_052924	exon5	c.C423T	p.Y141Y	CTCCTACGAGGCA	.	77	37	59	0	.	67	T	144460480	C	T	144460480	2	4	9	1	0	0	0	0	0	0	0	1	13350	547	19	1		1	RHPN1	8	144460480	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	335800	144460480	1903542	84	957											
GSDMD	79792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644198	144644198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GSDMD	NM_001166237	exon11	c.C893G	p.S298C	CCATCTCCAAGGA	.	35	17	26	0	.	90	G	144644198	C	G	144644198	3	3	9	1	0	0	0	0	1	0	0	0	6819	855	30	4	919	4	GSDMD	8	144644198	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	183718	144644198	1719824	85	958											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14816837	14816837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FREM1	NM_144966	exon16	c.A2579G	p.D860G	AGGTCATCCTGAA	.	69	20	63	0	.	138	C	14816837	T	C	14816837	3	2	9	1	0	0	0	0	1	0	0	0	6044	1435	50	2	4102	2	FREM1	9	14816837	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10		14816837	126396594	86	959											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35697837	35697837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TLN1	NM_006289	exon57	c.G7577A	p.R2526Q	TGCTGCCGGATCT	.	550	187	426	0	.	609	T	35697837	C	T	35697837	3	4	9	1	0	0	0	0	1	0	0	0	15944	652	23	1	52	1	TLN1	9	35697837	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	20881000	35697837	105515594	87	960											
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35841793	35841793	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TMEM8B	.	.	.	.	GCAAGGTCAGAAC	.	210	85	203	0	.	91	A	35841793	T	A	35841793	5	1	9	1	0	0	0	0	0	0	1	0	16212	1681	58	4		4	TMEM8B	9	35841793	Splice_Site	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	143956	35841793	105371638	88	961											
ZNF510	22869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99522164	99522164	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF510	NM_014930	exon6	c.A948G	p.K316K	AAAGGATTTCCCA	.	215	110	297	0	.	90	C	99522164	T	C	99522164	2	2	9	1	0	0	0	0	0	0	0	1	17951	1490	52	2		2	ZNF510	9	99522164	Silent	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	63680371	99522164	41691267	89	962											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107584777	107584777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABCA1	NM_005502	exon19	c.T2828C	p.M943T	TCTTACATGGTGG	.	86	43	107	0	.	1016	G	107584777	A	G	107584777	3	3	9	1	0	0	0	0	1	0	0	0	28	231	8	2	4085	2	ABCA1	9	107584777	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	8062613	107584777	33628654	90	963											
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112185130	112185130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PTPN3	NM_002829	exon13	c.C1004T	p.S335L	TTTACCGACCTGA	.	169	54	193	0	.	229	A	112185130	G	A	112185130	3	1	9	1	0	0	0	0	1	0	0	0	12789	1059	37	1	1793	1	PTPN3	9	112185130	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	4600353	112185130	29028301	91	964											
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125329852	125329852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR1L8	NM_001004454	exon1	c.G905T	p.R302M	AGCTTCCTCAGGC	.	102	46	156	0	.	70	A	125329852	C	A	125329852	3	1	9	1	0	0	0	0	1	0	0	0	10967	681	24	3	28	3	OR1L8	9	125329852	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	13144722	125329852	15883579	92	965											
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139904510	139904510	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABCA2	NM_212533	exon42	c.C6510T	p.F2170F	CTCGTCGAACAGC	.	39	19	37	0	.	90	A	139904510	G	A	139904510	2	1	9	1	0	0	0	0	0	0	0	1	32	1049	37	1		1	ABCA2	9	139904510	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	14574658	139904510	1308921	93	966											
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	54048601	54048601	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PRKG1	NM_006258	exon15	c.C1825T	p.L609L	AAAAAACTATGCA	.	135	64	229	0	.	523	T	54048601	C	T	54048601	2	4	9	1	0	0	0	0	0	0	0	1	12522	564	20	3		3	PRKG1	10	54048601	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10		54048601	81486146	94	967											
SLC16A9	220963	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	61413875	61413875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC16A9	NM_194298	exon5	c.C909A	p.N303K	TACTTTGTTTTTA	.	191	84	268	0	.	93	T	61413875	G	T	61413875	3	4	9	1	0	0	0	0	1	0	0	0	14415	1368	48	3	628	3	SLC16A9	10	61413875	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	7365274	61413875	74120872	95	968											
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71136836	71136836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HK1	NM_033498	exon11	c.C1034T	p.A345V	TGTCAGCCATCGA	.	95	36	127	0	.	252	T	71136836	C	T	71136836	3	4	9	1	0	0	0	0	1	0	0	0	7190	739	26	3	1230	3	HK1	10	71136836	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	9722961	71136836	64397911	96	969											
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121337034	121337034	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TIAL1	NM_001033925	exon9	c.717delA	p.R239fs	TGTCTGTCTCATA	.	153	65	155	0	.	91	-	121337034	T	-	121337034	7	5	9	1	0	1	0	1	0	0	0	0	15886	1664	58	0	477	0	TIAL1	10	121337034	Frame_Shift_Del	DEL	T	TCGA-BC-A10Z-01A-11D-A12Z-10	50200198	121337034	14197713	97	970											
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	127708372	127708372	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ADAM12	NM_003474	exon22	c.2561delC	p.P854fs	TTCTGAGGGGGGT	.	92	37	106	0	.	716	-	127708372	G	-	127708372	7	5	9	1	0	1	0	1	0	0	0	0	236	1000	35	0	176	0	ADAM12	10	127708372	Frame_Shift_Del	DEL	G	TCGA-BC-A10Z-01A-11D-A12Z-10	6371338	127708372	7826375	98	971											
OR51V1	283111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5221902	5221902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR51V1	NM_001004760	exon1	c.C29T	p.S10L	CTTACTGAAGTAA	.	121	54	164	0	.	69	A	5221902	G	A	5221902	3	1	9	1	0	0	0	0	1	0	0	0	11107	1294	45	3	939	3	OR51V1	11	5221902	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		5221902	129784614	99	972											
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6477958	6477958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TRIM3	NM_001248006	exon6	c.G998T	p.R333L	GCCTGGCGCAGGC	.	76	29	56	0	.	714	A	6477958	C	A	6477958	3	1	9	1	0	0	0	0	1	0	0	0	16501	768	27	1	1264	1	TRIM3	11	6477958	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1256056	6477958	128528558	100	973											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10651167	10651167	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MRVI1	NM_001206880	exon5	c.G492T	p.L164L	TTCTTCCAGCAGC	.	340	158	353	0	.	25	A	10651167	C	A	10651167	2	1	9	1	0	0	0	0	0	0	0	1	9853	581	21	3		3	MRVI1	11	10651167	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	4173209	10651167	124355349	101	974											
LRP4	4038	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46896621	46896621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LRP4	NM_002334	exon28	c.G3959A	p.C1320Y	TGGGAGCAGCCGC	.	51	15	52	0	.	94	T	46896621	C	T	46896621	3	4	9	1	0	0	0	0	1	0	0	0	8959	710	25	3	1802	3	LRP4	11	46896621	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	36245454	46896621	88109895	102	975											
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	48346884	48346884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR4C3	NM_001004702	exon1	c.T392G	p.F131C	CTCATTTTTTGGG	.	857	163	992	1	.	69	G	48346884	T	G	48346884	3	3	9	1	0	0	0	0	1	0	0	0	11050	1841	64	5	394	5	OR4C3	11	48346884	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	1450263	48346884	86659632	103	976											
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51412172	51412172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR4A5	NM_001005272	exon1	c.T224C	p.I75T	GGAGAAATGGTAG	.	430	188	482	0	.	92	G	51412172	A	G	51412172	3	3	9	1	0	0	0	0	1	0	0	0	11043	101	4	2	727	2	OR4A5	11	51412172	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	3065288	51412172	83594344	104	977											
OR5B17	219965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58125852	58125852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR5B17	NM_001005489	exon1	c.G691C	p.G231R	GGTATCCCTTACC	.	91	43	147	0	.	71	G	58125852	C	G	58125852	3	3	9	1	0	0	0	0	1	0	0	0	11149	632	22	4	255	4	OR5B17	11	58125852	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	6713680	58125852	76880664	105	978											
TYR	7299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911272	88911272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TYR	NM_000372	exon1	c.G151A	p.G51S	CTTTCAGGCAGAG	.	98	32	112	0	.	92	A	88911272	G	A	88911272	3	1	9	1	0	0	0	0	1	0	0	0	16810	1000	35	3	153	3	TYR	11	88911272	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	30785420	88911272	46095244	106	979											
ST14	6768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130058534	130058534	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ST14	NM_021978	exon3	c.C351T	p.A117A	CCTGGCCAGCAAG	.	89	37	62	0	.	94	T	130058534	C	T	130058534	2	4	9	1	0	0	0	0	0	0	0	1	15210	581	21	3		3	ST14	11	130058534	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	41147262	130058534	4947982	107	980											
GUCY2C	2984	broad.mit.edu;bcgsc.ca	37	12	14767834	14767834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GUCY2C	NM_004963	exon26	c.A3014G	p.D1005G	TTCTGGTCCTTCA	.	210	9	202	0	.	338	C	14767834	T	C	14767834	3	2	9	1	0	0	0	0	1	0	0	0	6896	1667	58	2	215	2	GUCY2C	12	14767834	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10		14767834	119084061	108	981											
TMPRSS12	283471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51237659	51237659	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_182559	exon2	c.A222G	p.Q74Q	GTTGCAAGGGTCT	.	132	63	153	0	.	.	G	51237659	A	G	51237659	2	3	9	1	0	0	0	0	0	0	0	1	16241	69	3	2		2	TMPRSS12	12	51237659	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	36469825	51237659	82614236	109	982											
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52822123	52822123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT75	NM_004693	exon7	c.G1299T	p.E433D	CTGGTACTCACGC	.	104	50	108	0	.	90	A	52822123	C	A	52822123	3	1	9	1	0	0	0	0	1	0	0	0	8488	564	20	3	368	3	KRT75	12	52822123	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1584464	52822123	81029772	110	983											
KRT6B	3854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52841356	52841356	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT6B	NM_005555	exon8	c.C1426T	p.L476L	CATTCAGCCTGTG	.	205	90	219	0	.	92	A	52841356	G	A	52841356	2	1	9	1	0	0	0	0	0	0	0	1	8481	985	34	3		3	KRT6B	12	52841356	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	19233	52841356	81010539	111	984											
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53823987	53823987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AMHR2	NM_020547	exon10	c.C1346A	p.T449N	CCCCTACCTCTGA	.	218	110	219	0	.	628	A	53823987	C	A	53823987	3	1	9	1	0	0	0	0	1	0	0	0	573	507	18	3	1384	3	AMHR2	12	53823987	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	982631	53823987	80027908	112	985											
HOXC10	3226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54382961	54382961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HOXC10	NM_017409	exon2	c.A760G	p.K254E	GAGATAAAGGCAG	.	127	61	174	0	.	91	G	54382961	A	G	54382961	3	3	9	1	0	0	0	0	1	0	0	0	7309	15	1	2	766	2	HOXC10	12	54382961	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	558974	54382961	79468934	113	986											
NAV3	89795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513202	78513202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NAV3	NM_014903	exon15	c.T3226G	p.S1076A	GGGTCATCTGCCA	.	149	55	201	1	.	279	G	78513202	T	G	78513202	3	3	9	1	0	0	0	0	1	0	0	0	10185	1435	50	5	3284	5	NAV3	12	78513202	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	24130241	78513202	55338693	114	987											
CCDC59	29080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	82752141	82752141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCDC59	NM_014167	exon1	c.G15T	p.R5S	GGACCGCCTCACC	.	53	24	38	0	.	90	A	82752141	C	A	82752141	3	1	9	1	0	0	0	0	1	0	0	0	2829	738	26	3	726	3	CCDC59	12	82752141	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	4238939	82752141	51099754	115	988											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	85546125	85546125	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LRRIQ1	NM_001079910	exon20	c.C4397A	p.S1466X	TTCTTTCAAACCA	.	225	102	253	0	.	95	A	85546125	C	A	85546125	4	1	9	1	0	0	0	0	0	1	0	0	9029	838	29	3	4475	3	LRRIQ1	12	85546125	Nonsense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	2793984	85546125	48305770	116	989											
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89744457	89744457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DUSP6	NM_001946	exon2	c.A746G	p.N249S	CCTGCGTTCTCAA	.	165	72	206	0	.	846	C	89744457	T	C	89744457	3	2	9	1	0	0	0	0	1	0	0	0	4829	1725	60	2	407	2	DUSP6	12	89744457	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	4198332	89744457	44107438	117	990											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101491695	101491695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANO4	NM_178826	exon20	c.T1873A	p.W625R	CAGACCTGGAATA	.	231	112	316	0	.	96	A	101491695	T	A	101491695	3	1	9	1	0	0	0	0	1	0	0	0	699	1580	55	4	1947	4	ANO4	12	101491695	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	11747238	101491695	32360200	118	991											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109637346	109637347	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.A923L	AGCTACGCTGAGA	.	31	26	54	0	.	.	CT	109637347	GC	CT	109637346	3	2	9	1	0	0	0	0	1	0	0	0	107	1087	38	4	2833	4	ACACB	12	109637346	Missense_Mutation	DNP	GC	TCGA-BC-A10Z-01A-11D-A12Z-10	8145651	109637346	24214549	119	992											
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112499100	112499100	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NAA25	NM_024953	exon12	c.T1242A	p.H414Q	ACACAAATGTTGC	.	202	95	163	0	.	155	T	112499100	A	T	112499100	3	4	9	1	0	0	0	0	1	0	0	0	10121	98	4	4	1728	4	NAA25	12	112499100	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	2861754	112499100	21352795	120	993											
SDS	10993	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113835135	113835135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SDS	NM_006843	exon6	c.T488C	p.I163T	AGCGCGATGGCCC	.	163	75	151	1	.	91	G	113835135	A	G	113835135	3	3	9	1	0	0	0	0	1	0	0	0	13975	333	12	2	510	2	SDS	12	113835135	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	1336035	113835135	20016760	121	994											
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	123474487	123474487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PITPNM2	NM_020845	exon17	c.G2578T	p.D860Y	GCGCATCGGGGGC	.	20	9	15	0	.	228	A	123474487	C	A	123474487	3	1	9	1	0	0	0	0	1	0	0	0	11951	884	31	1	1507	1	PITPNM2	12	123474487	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	9639352	123474487	10377408	122	995											
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123497236	123497236	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PITPNM2	NM_020845	exon4	c.C339T	p.T113T	ATAAAAGGTTTCA	.	116	48	145	0	.	228	A	123497236	G	A	123497236	2	1	9	1	0	0	0	0	0	0	0	1	11951	987	35	3		3	PITPNM2	12	123497236	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	22749	123497236	10354659	123	996											
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24797411	24797411	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPATA13	NM_001166271	exon2	c.A344T	p.K115M	CCTTTAAGAAACT	.	58	27	45	0	.	229	T	24797411	A	T	24797411	3	4	9	1	0	0	0	0	1	0	0	0	14999	72	3	4	346	4	SPATA13	13	24797411	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10		24797411	90372467	124	997											
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	33017687	33017687	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	N4BP2L2	NM_033111	exon7	c.A987G	p.K329K	GAGATTTTTATCT	.	331	175	379	0	.	68	C	33017687	T	C	33017687	2	2	9	1	0	0	0	0	0	0	0	1	10112	1838	64	2		2	N4BP2L2	13	33017687	Silent	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	8220276	33017687	82152191	125	998											
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38164531	38164531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	POSTN	NM_006475	exon4	c.A419T	p.E140V	CAAGCCTCATTAC	.	57	23	93	0	.	516	A	38164531	T	A	38164531	3	1	9	1	0	0	0	0	1	0	0	0	12259	1551	54	4	2171	4	POSTN	13	38164531	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	5146844	38164531	77005347	126	999											
JPH4	84502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	24040535	24040535	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	JPH4	NM_001146028	exon5	c.C1405T	p.Q469X	AGGGTTGGCGGGA	.	48	21	51	0	.	92	A	24040535	G	A	24040535	4	1	9	1	0	0	0	0	0	1	0	0	7963	1357	47	3	489	3	JPH4	14	24040535	Nonsense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		24040535	83309005	127	1000											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38724364	38724365	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.T288N	CCCACTGGTCACA	.	35	9	35	0	.	.	AT	38724365	GG	AT	38724364	3	1	9	1	0	0	0	0	1	0	0	0	3499	1335	47	3	612	3	CLEC14A	14	38724364	Missense_Mutation	DNP	GG	TCGA-BC-A10Z-01A-11D-A12Z-10	14683829	38724364	68625176	128	1001											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68274384	68274384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFYVE26	NM_015346	exon5	c.G617A	p.G206D	TCAGGGCCCTGCA	.	19	13	40	0	.	162	T	68274384	C	T	68274384	3	4	9	1	0	0	0	0	1	0	0	0	17665	739	26	3	7154	3	ZFYVE26	14	68274384	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	29550020	68274384	39075156	129	1002											
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69350972	69350972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACTN1	NM_001102	exon14	c.G1548T	p.K516N	AGCCCGCTTGGCA	.	122	111	251	1	.	514	A	69350972	C	A	69350972	3	1	9	1	0	0	0	0	1	0	0	0	204	796	28	3	1232	3	ACTN1	14	69350972	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1076588	69350972	37998568	130	1003	7	2									
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69350974	69350974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACTN1	NM_001102	exon14	c.A1546G	p.K516E	CCCGCTTGGCATA	.	122	110	260	0	.	514	C	69350974	T	C	69350974	3	2	9	1	0	0	0	0	1	0	0	0	204	1821	63	2	1234	2	ACTN1	14	69350974	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	2	69350974	37998566	131	1004	7	2									
ACOT2	10965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	74036182	74036182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACOT2	NM_006821	exon1	c.C238A	p.P80T	GACGAACCGGTGC	.	47	41	61	0	.	91	A	74036182	C	A	74036182	3	1	9	1	0	0	0	0	1	0	0	0	152	507	18	3	240	3	ACOT2	14	74036182	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	4685208	74036182	33313358	132	1005											
BCL11B	64919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	99640713	99640713	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BCL11B	NM_138576	exon4	c.C2460G	p.G820G	CCGCTCGCCGGTG	.	85	38	71	1	.	1147	C	99640713	G	C	99640713	2	2	9	1	0	0	0	0	0	0	0	1	1364	1074	38	4		4	BCL11B	14	99640713	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	25604531	99640713	7708827	133	1006											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102478246	102478246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DYNC1H1	NM_001376	exon33	c.A6653T	p.H2218L	TCAATCATGGCCT	.	118	61	131	0	.	98	T	102478246	A	T	102478246	3	4	9	1	0	0	0	0	1	0	0	0	4841	217	8	4	6783	4	DYNC1H1	14	102478246	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	2837533	102478246	4871294	134	1007											
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42734378	42734378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFP106	NM_022473	exon7	c.C3587T	p.S1196L	TGAACTGATGAGT	.	241	116	262	0	.	515	A	42734378	G	A	42734378	3	1	9	1	0	0	0	0	1	0	0	0	17634	1294	45	3	2116	3	ZFP106	15	42734378	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		42734378	59797014	135	1008											
SPATA5L1	79029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45713263	45713263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPATA5L1	NM_024063	exon8	c.A2117G	p.E706G	TGCAAGAAAATGG	.	84	41	99	0	.	94	G	45713263	A	G	45713263	3	3	9	1	0	0	0	0	1	0	0	0	15011	246	9	2	2147	2	SPATA5L1	15	45713263	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	2978885	45713263	56818129	136	1009											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48796007	48796007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FBN1	NM_000138	exon17	c.A2090C	p.Q697P	CACGGCTGGCAAG	.	223	96	259	0	.	92	G	48796007	T	G	48796007	3	3	9	1	0	0	0	0	1	0	0	0	5702	1580	55	5	6725	5	FBN1	15	48796007	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	3082744	48796007	53735385	137	1010											
NARG2	79664	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	60758888	60758888	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NARG2	NM_024611	exon5	c.G433T	p.E145X	TAACTTCTTCGTT	.	82	32	114	1	.	227	A	60758888	C	A	60758888	4	1	9	1	0	0	0	0	0	1	0	0	10169	922	32	3	2563	3	NARG2	15	60758888	Nonsense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	11962881	60758888	41772504	138	1011											
RBPMS2	348093	ucsc.edu;bcgsc.ca	37	15	65041670	65041670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RBPMS2	NM_194272	exon4	c.A227G	p.D76G	CGGCTGTCAAAGA	.	39	4	47	0	.	90	C	65041670	T	C	65041670	3	2	9	1	0	0	0	0	1	0	0	0	13164	1667	58	2	418	2	RBPMS2	15	65041670	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	4282782	65041670	37489722	139	1012											
ISL2	64843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	76632729	76632729	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ISL2	NM_145805	exon4	c.C624G	p.T208T	GCGGACCTGCTAC	.	125	28	77	0	.	90	G	76632729	C	G	76632729	2	3	9	1	0	0	0	0	0	0	0	1	7857	668	24	4		4	ISL2	15	76632729	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	11591059	76632729	25898663	140	1013											
FAH	2184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80465405	80465405	+	Silent	SNP	G	G	A	rs202041382		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAH	NM_000137	exon9	c.G756A	p.G252G	CCTTGGGAAGAGT	.	217	103	271	0	G|0.999;A|0.000	90	A	80465405	G	A	80465405	2	1	9	1	0	0	0	0	0	0	0	1	5371	1161	41	3		3	FAH	15	80465405	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	3832676	80465405	22065987	141	1014											
BTBD1	53339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83687553	83687553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BTBD1	NM_025238	exon7	c.G1196A	p.S399N	TCACAACTAAAGC	.	332	166	388	0	.	91	T	83687553	C	T	83687553	3	4	9	1	0	0	0	0	1	0	0	0	1537	565	20	3	260	3	BTBD1	15	83687553	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	3222148	83687553	18843839	142	1015											
CHSY1	22856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101718497	101718497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHSY1	NM_014918	exon3	c.G1505T	p.G502V	AAGGATCCAGATT	.	106	48	146	1	.	90	A	101718497	C	A	101718497	3	1	9	1	0	0	0	0	1	0	0	0	3412	855	30	3	907	3	CHSY1	15	101718497	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	18030944	101718497	812895	143	1016											
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29873915	29873915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CDIPT	NM_006319	exon2	c.T170C	p.L57P	TGATTAAGAGCGC	.	138	63	124	0	.	90	G	29873915	A	G	29873915	3	3	9	1	0	0	0	0	1	0	0	0	3123	72	3	2	491	2	CDIPT	16	29873915	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10		29873915	60480838	144	1017											
NOD2	64127	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744820	50744820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NOD2	NM_022162	exon4	c.G998C	p.C333S	TCAGCTGCCGGCA	.	134	64	126	2	.	231	C	50744820	G	C	50744820	3	2	9	1	0	0	0	0	1	0	0	0	10517	1319	46	4	1012	4	NOD2	16	50744820	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	20870905	50744820	39609933	145	1018											
CHD9	80205	hgsc.bcm.edu;bcgsc.ca	37	16	53352155	53352156	+	Frame_Shift_Ins	INS	-	-	AAAAAGAC	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHD9	NM_025134	exon37	c.7568_7569insAAAAAGAC	p.Q2523fs	CCAAACAAAAAAG	.	50	26	370	0	.	272	AAAAAGAC	53352156	-	AAAAAGAC	53352155	7	5	9	1	0	1	1	0	0	0	0	0	3332	130	5	0	7710	0	CHD9	16	53352155	Frame_Shift_Ins	INS	-	TCGA-BC-A10Z-01A-11D-A12Z-10	2607335	53352155	37002598	146	1019											
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55736246	55736246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC6A2	NM_001172501	exon15	c.G1842T	p.W614C	ACACTGGCTGGCC	.	150	141	298	1	.	526	T	55736246	G	T	55736246	3	4	9	1	0	0	0	0	1	0	0	0	14683	1212	42	3	1987	3	SLC6A2	16	55736246	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	2384091	55736246	34618507	147	1020											
CCDC102A	92922	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57549306	57549306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCDC102A	NM_033212	exon8	c.G1470T	p.E490D	CGTCTGCTCGTCC	.	60	57	92	1	.	91	A	57549306	C	A	57549306	3	1	9	1	0	0	0	0	1	0	0	0	2736	796	28	3	190	3	CCDC102A	16	57549306	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1813060	57549306	32805447	148	1021											
CPNE7	27132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89661808	89661808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CPNE7	NM_014427	exon16	c.G1561T	p.V521L	GACGGCGTGGTGA	.	114	63	132	1	.	90	T	89661808	G	T	89661808	3	4	9	1	0	0	0	0	1	0	0	0	3817	1145	40	1	1623	1	CPNE7	16	89661808	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	32112502	89661808	692945	149	1022											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15973499	15973499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOR1	NM_001190440	exon30	c.4541delT	p.M1514fs	TTCATCATGGGTG	.	82	69	150	0	.	229	-	15973499	A	-	15973499	7	5	9	1	0	1	0	1	0	0	0	0	10235	217	8	0	2893	0	NCOR1	17	15973499	Frame_Shift_Del	DEL	A	TCGA-BC-A10Z-01A-11D-A12Z-10		15973499	65221711	150	1023	8	2									
NCOR1	9611	hgsc.bcm.edu;bcgsc.ca	37	17	15973501	15973501	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOR1	NM_001190440	exon30	c.C4539A	p.P1513P	CATCATGGGTGAG	.	84	68	154	0	.	229	T	15973501	G	T	15973501	2	4	9	1	0	0	0	0	0	0	0	1	10235	1335	47	3		3	NCOR1	17	15973501	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	2	15973501	65221709	151	1024	8	2									
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28295950	28295950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EFCAB5	NM_198529	exon4	c.A332G	p.E111G	AGCCAGAGCACAC	.	213	113	242	1	.	70	G	28295950	A	G	28295950	3	3	9	1	0	0	0	0	1	0	0	0	4938	304	11	2	346	2	EFCAB5	17	28295950	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	12322449	28295950	52899260	152	1025											
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32959819	32959819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TMEM132E	NM_207313	exon7	c.C1309T	p.P437S	AATGCTCCCCTGG	.	262	74	190	0	.	68	T	32959819	C	T	32959819	3	4	9	1	0	0	0	0	1	0	0	0	16045	855	30	3	1335	3	TMEM132E	17	32959819	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	4663869	32959819	48235391	153	1026											
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34261843	34261843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LYZL6	NM_020426	exon4	c.G404T	p.G135V	GGCCGGCCTGAAC	.	115	69	65	0	.	90	A	34261843	C	A	34261843	3	1	9	1	0	0	0	0	1	0	0	0	9134	739	26	3	46	3	LYZL6	17	34261843	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1302024	34261843	46933367	154	1027											
SYNRG	11276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35880688	35880688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SYNRG	NM_007247	exon20	c.G3730C	p.E1244Q	CAAGCTCCTGAGC	.	208	71	158	0	.	92	G	35880688	C	G	35880688	3	3	9	1	0	0	0	0	1	0	0	0	15457	864	30	4	226	4	SYNRG	17	35880688	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1618845	35880688	45314522	155	1028											
FBXO47	494188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37093476	37093476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FBXO47	NM_001008777	exon11	c.C1311A	p.F437L	CTTATGGAAGTTA	.	278	165	183	0	.	90	T	37093476	G	T	37093476	3	4	9	1	0	0	0	0	1	0	0	0	5756	1165	41	3	51	3	FBXO47	17	37093476	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	1212788	37093476	44101734	156	1029											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37814042	37814042	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	STARD3	NM_006804	exon4	c.C312T	p.F104F	CTTCTTCCGCTTC	.	427	254	284	0	.	90	T	37814042	C	T	37814042	2	4	9	1	0	0	0	0	0	0	0	1	15256	854	30	3		3	STARD3	17	37814042	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	720566	37814042	43381168	157	1030											
KRT34	3885	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	39534380	39534380	+	Nonsense_Mutation	SNP	G	G	T	rs138365209	byfrequency;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT34	NM_021013	exon7	c.C1242A	p.C414X	GGTGGCGCATGGG	.	175	60	114	0	G|0.999;A|0.001	90	T	39534380	G	T	39534380	4	4	9	1	0	0	0	0	0	1	0	0	8471	1079	38	1	72	1	KRT34	17	39534380	Nonsense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	1720338	39534380	41660830	158	1031											
SLC4A1	6521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42335438	42335438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC4A1	NM_000342	exon11	c.G1198T	p.A400S	TGAATGCATCTGT	.	158	53	112	1	.	92	A	42335438	C	A	42335438	3	1	9	1	0	0	0	0	1	0	0	0	14650	710	25	3	1577	3	SLC4A1	17	42335438	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	2801058	42335438	38859772	159	1032											
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66303755	66303755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARSG	NM_001267727	exon2	c.A121G	p.I41V	GTGATTATTTTGG	.	753	240	519	0	.	91	G	66303755	A	G	66303755	3	3	9	1	0	0	0	0	1	0	0	0	992	449	16	2	123	2	ARSG	17	66303755	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	23968317	66303755	14891455	160	1033											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72345442	72345442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KIF19	NM_153209	exon10	c.1167delC	p.G389fs	GCGGGGCCAGGCC	.	168	96	129	0	.	90	-	72345442	C	-	72345442	7	5	9	1	0	1	0	1	0	0	0	0	8282	726	26	0	1205	0	KIF19	17	72345442	Frame_Shift_Del	DEL	C	TCGA-BC-A10Z-01A-11D-A12Z-10	6041687	72345442	8849768	161	1034											
TEX19	400629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80320463	80320463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TEX19	NM_207459	exon2	c.C437G	p.P146R	GTCTTCCCTGGAG	.	215	68	160	0	.	90	G	80320463	C	G	80320463	3	3	9	1	0	0	0	0	1	0	0	0	15777	623	22	4	439	4	TEX19	17	80320463	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	7975021	80320463	874747	162	1035											
SPIRE1	56907	hgsc.bcm.edu;broad.mit.edu	37	18	12453128	12453128	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPIRE1	NM_001128626	exon14	c.1786delT	p.C596fs	GGCAACAAAAGCA	.	232	22	283	0	.	90	-	12453128	A	-	12453128	7	5	9	1	0	1	0	1	0	0	0	0	15070	130	5	0	500	0	SPIRE1	18	12453128	Frame_Shift_Del	DEL	A	TCGA-BC-A10Z-01A-11D-A12Z-10		12453128	65624120	163	1036											
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	57364549	57364549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCBE1	NM_133459	exon1	c.G26T	p.G9V	GCTCCTCCCCGGC	.	52	25	32	0	.	93	A	57364549	C	A	57364549	3	1	9	1	0	0	0	0	1	0	0	0	2731	855	30	3	1238	3	CCBE1	18	57364549	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	44911421	57364549	20712699	164	1037											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2217053	2217053	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DOT1L	NM_032482	exon21	c.G2508A	p.G836G	CCCTGGGGCCTTG	.	43	17	39	0	.	132	A	2217053	G	A	2217053	2	1	9	1	0	0	0	0	0	0	0	1	4709	1219	43	3		3	DOT1L	19	2217053	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		2217053	56911930	165	1038											
DOT1L	84444	broad.mit.edu;mdanderson.org	37	19	2226716	2226716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DOT1L	NM_032482	exon27	c.C4196G	p.P1399R	GCGGGCCCACGGA	.	15	6	11	0	.	132	G	2226716	C	G	2226716	3	3	9	1	0	0	0	0	1	0	0	0	4709	623	22	4	4302	4	DOT1L	19	2226716	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	9663	2226716	56902267	166	1039											
TLE6	79816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2989558	2989558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TLE6	NM_001143986	exon13	c.G1019A	p.C340Y	GCACCTGCCTGCT	.	49	15	67	0	.	91	A	2989558	G	A	2989558	3	1	9	1	0	0	0	0	1	0	0	0	15939	1319	46	3	1065	3	TLE6	19	2989558	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	762842	2989558	56139425	167	1040											
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7996055	7996055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TIMM44	NM_006351	exon10	c.C1006G	p.L336V	TGTCAAGCTCTCC	.	271	89	370	1	.	91	C	7996055	G	C	7996055	3	2	9	1	0	0	0	0	1	0	0	0	15909	971	34	4	368	4	TIMM44	19	7996055	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	5006497	7996055	51132928	168	1041											
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8028565	8028565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ELAVL1	NM_001419	exon6	c.G783T	p.W261C	CATCTGCCAGAGG	.	194	105	247	0	.	90	A	8028565	C	A	8028565	3	1	9	1	0	0	0	0	1	0	0	0	5049	740	26	3	201	3	ELAVL1	19	8028565	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	32510	8028565	51100418	169	1042											
MUC16	94025	hgsc.bcm.edu;bcgsc.ca	37	19	9045850	9045853	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MUC16	NM_024690	exon5	c.35778_35781del	p.11926_11927del	AACTGAAGTTACA	.	241	89	320	0	.	566	-	9045853	AGTT	-	9045850	7	5	9	1	0	1	0	1	0	0	0	0	9973	59	3	0	8062	0	MUC16	19	9045850	Frame_Shift_Del	DEL	AGTT	TCGA-BC-A10Z-01A-11D-A12Z-10	1017285	9045850	50083133	170	1043											
FDX1L	112812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10426560	10426560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FDX1L	NM_001031734	exon1	c.C113T	p.A38V	CCCAGCGCCACCC	.	71	28	79	0	.	23	A	10426560	G	A	10426560	3	1	9	1	0	0	0	0	1	0	0	0	5805	1087	38	1	458	1	FDX1L	19	10426560	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	1380710	10426560	48702423	171	1044											
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	13054680	13054680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CALR	NM_004343	exon9	c.G1207T	p.E403X	AAGGAGGAAGATG	.	388	192	424	1	.	91	T	13054680	G	T	13054680	4	4	9	1	0	0	0	0	0	1	0	0	2592	1175	41	3	1241	3	CALR	19	13054680	Nonsense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	2628120	13054680	46074303	172	1045											
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14038069	14038069	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CC2D1A	NM_017721	exon22	c.G2307A	p.E769E	CCGGGAGATCCTT	.	221	9	217	0	.	90	A	14038069	G	A	14038069	2	1	9	1	0	0	0	0	0	0	0	1	2726	933	33	3		3	CC2D1A	19	14038069	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	983389	14038069	45090914	173	1046											
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20308237	20308237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF486	NM_052852	exon4	c.T718C	p.C240R	TACAAATGTGAAG	.	93	52	94	0	.	47	C	20308237	T	C	20308237	3	2	9	1	0	0	0	0	1	0	0	0	17936	1464	51	2	732	2	ZNF486	19	20308237	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	6270168	20308237	38820746	174	1047											
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21720692	21720692	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF429	NM_001001415	exon4	c.A1837T	p.K613X	CATAAGAAAATTC	.	102	45	90	0	.	516	T	21720692	A	T	21720692	4	4	9	1	0	0	0	0	0	1	0	0	17899	247	9	4	1851	4	ZNF429	19	21720692	Nonsense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	1412455	21720692	37408291	175	1048											
KRTDAP	388533	ucsc.edu;bcgsc.ca	37	19	35979362	35979362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRTDAP	NM_207392	exon4	c.A194G	p.N65S	TGCCAGTTCAGGA	.	54	5	55	0	.	90	C	35979362	T	C	35979362	3	2	9	1	0	0	0	0	1	0	0	0	8580	1725	60	2	117	2	KRTDAP	19	35979362	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	14258670	35979362	23149621	176	1049											
ZNF571	51276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38056942	38056942	+	Missense_Mutation	SNP	G	G	A	rs115914028	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF571	NM_016536	exon4	c.C388T	p.R130W	TTATCCGATGAAA	.	366	169	393	0	G|0.998;A|0.002	90	A	38056942	G	A	38056942	3	1	9	1	0	0	0	0	1	0	0	0	18000	1057	37	1	1445	1	ZNF571	19	38056942	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	2077580	38056942	21072041	177	1050											
SERTAD1	29950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40929016	40929016	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SERTAD1	NM_013376	exon2	c.G438T	p.G146G	TGCTCCCCCGATG	.	40	19	56	0	.	226	A	40929016	C	A	40929016	2	1	9	1	0	0	0	0	0	0	0	1	14120	610	22	3		3	SERTAD1	19	40929016	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	2872074	40929016	18199967	178	1051											
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42636560	42636560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	POU2F2	NM_002698	exon1	c.G4T	p.V2F	AGTGAACCATGCT	.	92	42	69	0	.	227	A	42636560	C	A	42636560	3	1	9	1	0	0	0	0	1	0	0	0	12272	507	18	3	1443	3	POU2F2	19	42636560	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1707544	42636560	16492423	179	1052											
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44890851	44890851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF285	NM_152354	exon4	c.A1556C	p.K519T	AAGCCTTTACCAC	.	422	204	501	0	.	94	G	44890851	T	G	44890851	3	3	9	1	0	0	0	0	1	0	0	0	17819	1841	64	5	220	5	ZNF285	19	44890851	Missense_Mutation	SNP	T	TCGA-BC-A10Z-01A-11D-A12Z-10	2254291	44890851	14238132	180	1053											
IZUMO1	284359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49248991	49248991	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IZUMO1	NM_182575	exon2	c.T126C	p.P42P	GTGGCCAGGCAGG	.	356	161	378	0	.	91	G	49248991	A	G	49248991	2	3	9	1	0	0	0	0	0	0	0	1	7933	175	7	2		2	IZUMO1	19	49248991	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	4358140	49248991	9879992	181	1054											
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu	37	19	50393089	50393089	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IL4I1	NM_172374	exon10	c.G1608A	p.T536T	GCTGGCCGTGTCC	.	147	6	156	0	.	523	T	50393089	C	T	50393089	2	4	9	1	0	0	0	0	0	0	0	1	7697	639	23	1		1	IL4I1	19	50393089	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1144098	50393089	8735894	182	1055											
KLK6	5653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51465087	51465087	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KLK6	NM_001012964	exon5	c.T495A	p.R165R	CTCCTCACGGGAC	.	149	65	121	0	.	650	T	51465087	A	T	51465087	2	4	9	1	0	0	0	0	0	0	0	1	8408	146	6	4		4	KLK6	19	51465087	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	1071998	51465087	7663896	183	1056											
KLK8	11202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51503358	51503358	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KLK8	NM_144505	exon4	c.G522A	p.Q174Q	GGATGCCTGGTCA	.	97	53	108	0	.	604	T	51503358	C	T	51503358	2	4	9	1	0	0	0	0	0	0	0	1	8410	680	24	3		3	KLK8	19	51503358	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	38271	51503358	7625625	184	1057											
IGLON5	402665	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51830117	51830117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001101372	exon5	c.C611T	p.A204V	ACTCGGCGCCCGA	.	79	32	69	1	.	.	T	51830117	C	T	51830117	3	4	9	1	0	0	0	0	1	0	0	0	7595	768	27	1	629	1	IGLON5	19	51830117	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	326759	51830117	7298866	185	1058											
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51961640	51961640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SIGLEC8	NM_014442	exon1	c.T2A	p.M1K	AGCAGCATGTCTG	.	124	55	102	0	.	94	T	51961640	A	T	51961640	3	4	9	1	0	0	0	0	1	0	0	0	14314	217	8	4	1525	4	SIGLEC8	19	51961640	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	131523	51961640	7167343	186	1059											
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57176266	57176266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF835	NM_001005850	exon2	c.301delG	p.E101fs	CTCTCTCCCGCTG	.	82	38	82	0	.	72	-	57176266	C	-	57176266	7	5	9	1	0	1	0	1	0	0	0	0	18183	864	30	0	1314	0	ZNF835	19	57176266	Frame_Shift_Del	DEL	C	TCGA-BC-A10Z-01A-11D-A12Z-10	5214626	57176266	1952717	187	1060											
RIN2	54453	ucsc.edu;bcgsc.ca	37	20	19870240	19870240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RIN2	NM_001242581	exon2	c.G142T	p.G48W	TCGCTGGGGGAAA	.	35	4	64	0	.	660	T	19870240	G	T	19870240	3	4	9	1	0	0	0	0	1	0	0	0	13372	1247	43	3		3	RIN2	20	19870240	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		19870240	43155280	188	1061											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50701265	50701265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFP64	NM_199427	exon9	c.T1769G	p.V590G	TCCCTGACGAAGG	.	93	52	75	0	.	155	C	50701265	A	C	50701265	3	2	9	1	0	0	0	0	1	0	0	0	17649	275	10	5	172	5	ZFP64	20	50701265	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	30831025	50701265	12324255	189	1062											
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	56227370	56227370	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PMEPA1	NM_020182	exon4	c.G603A	p.R201R	GCCCAGCCTGGCA	.	34	20	17	0	.	227	T	56227370	C	T	56227370	2	4	9	1	0	0	0	0	0	0	0	1	12132	738	26	3		3	PMEPA1	20	56227370	Silent	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	5526105	56227370	6798150	190	1063											
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62839764	62839764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYT1	NM_004535	exon7	c.G1215T	p.Q405H	CGAGCAGAGCCAG	.	63	25	53	0	.	704	T	62839764	G	T	62839764	3	4	9	1	0	0	0	0	1	0	0	0	10106	933	33	3	1233	3	MYT1	20	62839764	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	6612394	62839764	185756	191	1064											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41505791	41505791	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DSCAM	NM_001271534	exon19	c.C3552A	p.T1184T	CTCTTTGGTCCGG	.	146	59	159	0	.	101	T	41505791	G	T	41505791	2	4	9	1	0	0	0	0	0	0	0	1	4768	1335	47	3		3	DSCAM	21	41505791	Silent	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10		41505791	6624104	192	1065											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24472172	24472172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CABIN1	NM_001199281	exon19	c.A2687T	p.H896L	CAGCCCACGAGTA	.	297	147	270	0	.	94	T	24472172	A	T	24472172	3	4	9	1	0	0	0	0	1	0	0	0	2528	159	6	4	2757	4	CABIN1	22	24472172	Missense_Mutation	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10		24472172	26832394	193	1066											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423432	26423432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYO18B	NM_032608	exon43	c.C7492T	p.P2498S	CCGGAGCCCAAGG	.	66	33	68	0	.	142	T	26423432	C	T	26423432	3	4	9	1	0	0	0	0	1	0	0	0	10066	739	26	3	7658	3	MYO18B	22	26423432	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	1951260	26423432	24881134	194	1067											
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31487025	31487025	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SMTN	NM_001207018	exon9	c.C1184G	p.S395C	TCACATCTGATTC	.	261	109	247	0	.	154	G	31487025	C	G	31487025	3	3	9	1	0	0	0	0	1	0	0	0	14814	913	32	4	1050	4	SMTN	22	31487025	Missense_Mutation	SNP	C	TCGA-BC-A10Z-01A-11D-A12Z-10	5063593	31487025	19817541	195	1068											
NHS	4810	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	17710579	17710579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NHS	NM_198270	exon3	c.843delC	p.H281fs	CCGTCACTTTTTA	.	196	88	272	0	.	197	-	17710579	C	-	17710579	7	5	9	1	0	1	0	1	0	0	0	0	10411	564	20	0	891	0	NHS	23	17710579	Frame_Shift_Del	DEL	C	TCGA-BC-A10Z-01A-11D-A12Z-10		17710579	137559981	196	1069											
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21627708	21627708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CNKSR2	NM_014927	exon20	c.G2665T	p.A889S	GGGGAGGCAGCAG	.	29	21	22	0	.	625	T	21627708	G	T	21627708	3	4	9	1	0	0	0	0	1	0	0	0	3607	1203	42	3	2743	3	CNKSR2	23	21627708	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	3917129	21627708	133642852	197	1070											
AR	367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	66766453	66766453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AR	NM_000044	exon1	c.G1465A	p.G489R	CCTCAGGGGCTGG	.	54	21	48	0	.	661	A	66766453	G	A	66766453	3	1	9	1	0	0	0	0	1	0	0	0	836	1232	43	3	1467	3	AR	23	66766453	Missense_Mutation	SNP	G	TCGA-BC-A10Z-01A-11D-A12Z-10	45138745	66766453	88504107	198	1071											
DLG3	1741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69669639	69669639	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DLG3	NM_021120	exon4	c.A633G	p.R211R	GGTGCGATTGGTG	.	101	49	111	1	.	219	G	69669639	A	G	69669639	2	3	9	1	0	0	0	0	0	0	0	1	4556	320	12	2		2	DLG3	23	69669639	Silent	SNP	A	TCGA-BC-A10Z-01A-11D-A12Z-10	2903186	69669639	85600921	199	1072											
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	158651408	158651408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPTA1	NM_003126	exon4	c.C440T	p.T147I	TCCAGGGTCAGCT	.	224	16	281	0	.	142	A	158651408	G	A	158651408	3	1	10	1	0	0	0	0	1	0	0	0	15115	1261	44	3	7015	3	SPTA1	1	158651408	Missense_Mutation	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10		158651408	90599213	1	1073											
HMCN1	83872	bcgsc.ca;mdanderson.org	37	1	186007150	186007150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMCN1	NM_031935	exon37	c.C5834A	p.A1945D	AGGCAGCTGGAAA	.	215	19	234	1	.	113	A	186007150	C	A	186007150	3	1	10	1	0	0	0	0	1	0	0	0	7220	797	28	3	5980	3	HMCN1	1	186007150	Missense_Mutation	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	27355742	186007150	63243471	2	1074											
C1orf65	164127	hgsc.bcm.edu;bcgsc.ca	37	1	223568584	223568584	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C1orf65	NM_152610	exon1	c.C1767T	p.L589L	GAAGCTCCCTCAG	.	115	9	138	0	.	91	T	223568584	C	T	223568584	2	4	10	1	0	0	0	0	0	0	0	1	2055	842	30	3		3	C1orf65	1	223568584	Silent	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	37561434	223568584	25682037	3	1075											
OBSCN	84033	hgsc.bcm.edu;bcgsc.ca	37	1	228495849	228495849	+	Silent	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OBSCN	NM_001271223	exon58	c.G15375T	p.A5125A	TGATGCGGAGGTG	.	129	9	168	0	.	403	T	228495849	G	T	228495849	2	4	10	1	0	0	0	0	0	0	0	1	10812	1103	39	1		1	OBSCN	1	228495849	Silent	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10	4927265	228495849	20754772	4	1076											
ZNF638	27332	hgsc.bcm.edu;bcgsc.ca	37	2	71658550	71658550	+	Missense_Mutation	SNP	T	T	G	rs201989581	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF638	NM_014497	exon26	c.T5744G	p.V1915G	CTGATGTCCCTGA	.	292	12	404	0	T|0.999;C|0.001	94	G	71658550	T	G	71658550	3	3	10	1	0	0	0	0	1	0	0	0	18052	1667	58	5	5842	5	ZNF638	2	71658550	Missense_Mutation	SNP	T	TCGA-BC-A110-01A-11D-A12Z-10		71658550	171540823	5	1077											
NCL	4691	hgsc.bcm.edu;mdanderson.org	37	2	232325423	232325423	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCL	NM_005381	exon4	c.T768A	p.D256E	ATCATCATCATCT	.	385	35	474	0	.	230	T	232325423	A	T	232325423	3	4	10	1	0	0	0	0	1	0	0	0	10226	214	8	4	1408	4	NCL	2	232325423	Missense_Mutation	SNP	A	TCGA-BC-A110-01A-11D-A12Z-10	160666873	232325423	10873950	6	1078											
USP40	55230	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	234394446	234394446	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USP40	NM_018218	exon28	c.C3408T	p.P1136P	CTTTTCGGGAAAG	.	335	21	438	0	.	455	A	234394446	G	A	234394446	2	1	10	1	0	0	0	0	0	0	0	1	17069	1103	39	1		1	USP40	2	234394446	Silent	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10	2069023	234394446	8804927	7	1079											
IFT57	55081	hgsc.bcm.edu;bcgsc.ca	37	3	107937444	107937444	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT57	NM_018010	exon3	c.A432G	p.V144V	ATAGCATACATGT	.	307	13	393	0	.	227	C	107937444	T	C	107937444	2	2	10	1	0	0	0	0	0	0	0	1	7562	1393	49	2		2	IFT57	3	107937444	Silent	SNP	T	TCGA-BC-A110-01A-11D-A12Z-10		107937444	90084986	8	1080											
ARHGAP10	79658	hgsc.bcm.edu;bcgsc.ca	37	4	148886196	148886196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARHGAP10	NM_024605	exon17	c.G1472A	p.R491H	AATCTCGTGTTAA	.	466	23	561	0	.	229	A	148886196	G	A	148886196	3	1	10	1	0	0	0	0	1	0	0	0	862	1145	40	1	1538	1	ARHGAP10	4	148886196	Missense_Mutation	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10		148886196	42268080	9	1081											
SGTB	54557	hgsc.bcm.edu;bcgsc.ca	37	5	64976616	64976616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SGTB	NM_019072	exon7	c.C485T	p.A162V	GTGAGGGCCAGCC	.	136	9	182	0	.	90	A	64976616	G	A	64976616	3	1	10	1	0	0	0	0	1	0	0	0	14226	1203	42	3	449	3	SGTB	5	64976616	Missense_Mutation	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10		64976616	115938644	10	1082											
C6orf106	64771	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34574641	34574641	+	Silent	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C6orf106	NM_024294	exon4	c.T552G	p.L184L	TCCTAAAAGTCCA	.	67	8	91	0	.	93	C	34574641	A	C	34574641	2	2	10	1	0	0	0	0	0	0	0	1	2319	1	1	5		5	C6orf106	6	34574641	Silent	SNP	A	TCGA-BC-A110-01A-11D-A12Z-10		34574641	136540426	11	1083											
UHRF1BP1	54887	bcgsc.ca;mdanderson.org	37	6	34802105	34802105	+	Silent	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UHRF1BP1	NM_017754	exon5	c.C450A	p.L150L	GCAGCTCCAGGGC	.	223	20	285	1	.	93	A	34802105	C	A	34802105	2	1	10	1	0	0	0	0	0	0	0	1	16965	842	30	3		3	UHRF1BP1	6	34802105	Silent	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	227464	34802105	136312962	12	1084											
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48559659	48559659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ABCA13	NM_152701	exon53	c.T13820C	p.V4607A	ATGATGTCCTCAA	.	134	16	179	1	.	521	C	48559659	T	C	48559659	3	2	10	1	0	0	0	0	1	0	0	0	31	1667	58	2	13859	2	ABCA13	7	48559659	Missense_Mutation	SNP	T	TCGA-BC-A110-01A-11D-A12Z-10		48559659	110579004	13	1085											
GUSB	2990	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65439983	65439983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.G988T	p.A330S	TGACAGCCACAGT	.	111	14	144	1	.	90	A	65439983	C	A	65439983	3	1	10	1	0	0	0	0	1	0	0	0	6902	739	26	3	995	3	GUSB	7	65439983	Missense_Mutation	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	16880324	65439983	93698680	14	1086			1	2		2	2	61	N	G_C	5.426777e-05
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	65440043	65440043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.C928T	p.Q310X	ACGTCTGTGCAGT	.	68	9	80	0	.	90	A	65440043	G	A	65440043	4	1	10	1	0	0	0	0	0	1	0	0	6902	1386	48	3	1055	3	GUSB	7	65440043	Nonsense_Mutation	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10	60	65440043	93698620	15	1087			1	2		2	2	61	N	G_C	5.426777e-05
PTPRZ1	5803	bcgsc.ca;mdanderson.org	37	7	121684477	121684477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PTPRZ1	NM_002851	exon23	c.A5939G	p.E1980G	GCCAGGAGCAATA	.	404	22	446	1	.	699	G	121684477	A	G	121684477	3	3	10	1	0	0	0	0	1	0	0	0	12814	318	11	2	6029	2	PTPRZ1	7	121684477	Missense_Mutation	SNP	A	TCGA-BC-A110-01A-11D-A12Z-10	56244434	121684477	37454186	16	1088											
CTHRC1	115908	hgsc.bcm.edu;bcgsc.ca	37	8	104388131	104388131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CTHRC1	NM_138455	exon2	c.T316A	p.Y106N	CCCAACTACAAGC	.	143	8	147	0	.	91	A	104388131	T	A	104388131	3	1	10	1	0	0	0	0	1	0	0	0	4010	1522	53	4	322	4	CTHRC1	8	104388131	Missense_Mutation	SNP	T	TCGA-BC-A110-01A-11D-A12Z-10		104388131	41975891	17	1089											
ABRA	137735	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	107782232	107782232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	ABRA,NS,carcinoma,0	ABRA	NM_139166	exon1	c.C187G	p.P63A	GTTTAGGAGCTTG	.	354	32	573	0	.	92	C	107782232	G	C	107782232	3	2	10	1	0	0	0	0	1	0	0	0	100	1174	41	4	966	4	ABRA	8	107782232	Missense_Mutation	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10	3394101	107782232	38581790	18	1090											
PIGO	84720	ucsc.edu;bcgsc.ca	37	9	35093208	35093208	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIGO	NM_152850	exon7	c.940-2A>G	.	GGCTCCTAAAGGA	.	42	4	47	0	.	290	C	35093208	T	C	35093208	5	2	10	1	0	0	0	0	0	0	1	0	11894	1536	53	2	2355	2	PIGO	9	35093208	Splice_Site	SNP	T	TCGA-BC-A110-01A-11D-A12Z-10		35093208	106120223	19	1091											
ORM1	5004	hgsc.bcm.edu;bcgsc.ca	37	9	117086341	117086341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ORM1	NM_000607	exon3	c.C301T	p.R101W	GTCCAGCGGGAAA	.	240	10	286	0	.	90	T	117086341	C	T	117086341	3	4	10	1	0	0	0	0	1	0	0	0	11267	759	27	1	311	1	ORM1	9	117086341	Missense_Mutation	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	81993133	117086341	24127090	20	1092											
OLFML2A	169611	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	127561615	127561615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OLFML2A	NM_182487	exon4	c.C514A	p.R172S	AGCGTGCGCCACC	.	125	10	159	0	.	68	A	127561615	C	A	127561615	3	1	10	1	0	0	0	0	1	0	0	0	10857	768	27	1	528	1	OLFML2A	9	127561615	Missense_Mutation	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	10475274	127561615	13651816	21	1093											
HIF1A	3091	hgsc.bcm.edu;bcgsc.ca	37	14	62207716	62207716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HIF1A	NM_001243084	exon12	c.A1975T	p.I659F	GAAGACATTAAAA	.	158	9	235	0	.	1149	T	62207716	A	T	62207716	3	4	10	1	0	0	0	0	1	0	0	0	7103	217	8	4	1949	4	HIF1A	14	62207716	Missense_Mutation	SNP	A	TCGA-BC-A110-01A-11D-A12Z-10		62207716	45141824	22	1094											
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105419292	105419292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AHNAK2	NM_138420	exon7	c.G2496T	p.K832N	TTTGAACTTGCTG	.	228	13	323	0	.	47	A	105419292	C	A	105419292	3	1	10	1	0	0	0	0	1	0	0	0	415	564	20	3	14895	3	AHNAK2	14	105419292	Missense_Mutation	SNP	C	TCGA-BC-A110-01A-11D-A12Z-10	43211576	105419292	1930248	23	1095											
TNRC6C	57690	ucsc.edu;bcgsc.ca	37	17	76060811	76060811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TNRC6C	NM_018996	exon5	c.G2404A	p.G802S	TCATCAGGCTGGG	.	39	4	71	0	.	24	A	76060811	G	A	76060811	3	1	10	1	0	0	0	0	1	0	0	0	16339	1000	35	3	2410	3	TNRC6C	17	76060811	Missense_Mutation	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10		76060811	5134399	24	1096											
SHKBP1	92799	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41089577	41089577	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SHKBP1	NM_138392	exon12	c.G1119A	p.A373A	CCCAGCGGAGGAT	.	105	11	174	0	.	92	A	41089577	G	A	41089577	2	1	10	1	0	0	0	0	0	0	0	1	14284	1103	39	1		1	SHKBP1	19	41089577	Silent	SNP	G	TCGA-BC-A110-01A-11D-A12Z-10		41089577	18039406	25	1097											
PRPF31	26121	ucsc.edu;bcgsc.ca	37	19	54631459	54631459	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRPF31	NM_015629	exon10	c.A957G	p.E319E	CTACGAACTGAAG	.	46	4	76	1	.	91	G	54631459	A	G	54631459	2	3	10	1	0	0	0	0	0	0	0	1	12566	40	2	2		2	PRPF31	19	54631459	Silent	SNP	A	TCGA-BC-A110-01A-11D-A12Z-10	13541882	54631459	4497524	26	1098											
SON	6651	hgsc.bcm.edu;bcgsc.ca	37	21	34925206	34925206	+	Silent	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SON	NM_032195	exon3	c.T3669A	p.P1223P	GGAGCCTTCAGCA	.	237	14	282	0	.	97	A	34925206	T	A	34925206	2	1	10	1	0	0	0	0	0	0	0	1	14926	1596	56	4		4	SON	21	34925206	Silent	SNP	T	TCGA-BC-A110-01A-11D-A12Z-10		34925206	13204689	27	1099											
HMGB3	3149	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	150155724	150155724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMGB3	NM_005342	exon4	c.A414T	p.E138D	CAGTGAAAAGCAG	.	158	11	219	0	.	226	T	150155724	A	T	150155724	3	4	10	1	0	0	0	0	1	0	0	0	7227	11	1	4	424	4	HMGB3	23	150155724	Missense_Mutation	SNP	A	TCGA-BC-A110-01A-11D-A12Z-10		150155724	5114836	28	1100											
PANK4	55229	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2452651	2452651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PANK4	NM_018216	exon3	c.G311C	p.C104S	TCCAGGCAGGCTT	.	312	54	299	0	.	158	G	2452651	C	G	2452651	3	3	11	1	0	0	0	0	1	0	0	0	11419	710	25	4	2078	4	PANK4	1	2452651	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		2452651	246797970	1	1101											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11303173	11303173	+	Silent	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MTOR	NM_004958	exon9	c.T1410C	p.H470H	TTACTTATGGGCG	.	40	24	67	0	.	1439	G	11303173	A	G	11303173	2	3	11	1	0	0	0	0	0	0	0	1	9954	446	16	2		2	MTOR	1	11303173	Silent	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	8850522	11303173	237947448	2	1102											
WDTC1	23038	hgsc.bcm.edu;broad.mit.edu	37	1	27622887	27622888	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	WDTC1	NM_015023	exon10	c.944_945insG	p.S315fs	ACTCCTCGGGGGG	.	237	17	415	0	.	91	G	27622888	-	G	27622887	7	5	11	1	0	1	1	0	0	0	0	0	17339	893	31	0	978	0	WDTC1	1	27622887	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	16319714	27622887	221627734	3	1103											
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu	37	1	36755000	36755001	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	THRAP3	NM_005119	exon5	c.1380_1381insA	p.N460fs	TGCAAACAAAAAC	.	128	10	126	0	.	663	A	36755001	-	A	36755000	7	5	11	1	0	1	1	0	0	0	0	0	15871	477	17	0	1390	0	THRAP3	1	36755000	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	9132113	36755000	212495621	4	1104											
RIMS3	9783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	41092203	41092203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RIMS3	NM_014747	exon8	c.C913T	p.P305S	ATGAGGGGCTGGT	.	51	9	82	0	.	90	A	41092203	G	A	41092203	3	1	11	1	0	0	0	0	1	0	0	0	13369	1232	43	3	17	3	RIMS3	1	41092203	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4337203	41092203	208158418	5	1105											
ERMAP	114625	hgsc.bcm.edu;broad.mit.edu	37	1	43304572	43304573	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ERMAP	NM_018538	exon7	c.617_618insA	p.G206fs	TTTTAGGAAAACT	.	182	12	186	0	.	91	A	43304573	-	A	43304572	7	5	11	1	0	1	1	0	0	0	0	0	5234	1188	41	0	639	0	ERMAP	1	43304572	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	2212369	43304572	205946049	6	1106											
TMEM125	128218	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43738869	43738869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TMEM125	NM_144626	exon4	c.C476T	p.S159L	TGGGCTCGCTTTT	.	378	84	416	2	.	153	T	43738869	C	T	43738869	3	4	11	1	0	0	0	0	1	0	0	0	16034	893	31	1	478	1	TMEM125	1	43738869	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	434297	43738869	205511752	7	1107											
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77763544	77763544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AK5	NM_174858	exon5	c.A611G	p.Q204R	TAAAGCAAAAATT	.	155	50	156	0	.	227	G	77763544	A	G	77763544	3	3	11	1	0	0	0	0	1	0	0	0	443	130	5	2	629	2	AK5	1	77763544	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	34024675	77763544	171487077	8	1108											
FUBP1	8880	hgsc.bcm.edu;ucsc.edu	37	1	78429797	78429797	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FUBP1	NM_003902	exon12	c.C991T	p.R331X	GACATCGGTCTGG	.	602	219	645	0	.	227	A	78429797	G	A	78429797	4	1	11	1	0	0	0	0	0	1	0	0	6092	1124	39	1	979	1	FUBP1	1	78429797	Nonsense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	666253	78429797	170820824	9	1109											
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	91742600	91742600	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HFM1	NM_001017975	exon31	c.3411delA	p.K1137fs	CCCAGGTTTTTTG	.	317	77	317	0	.	112	-	91742600	T	-	91742600	7	5	11	1	0	1	0	1	0	0	0	0	7083	1722	60	0	932	0	HFM1	1	91742600	Frame_Shift_Del	DEL	T	TCGA-BC-A112-01A-11D-A12Z-10	13312803	91742600	157508021	10	1110	9	2									
HFM1	164045	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	91742607	91742607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HFM1	NM_001017975	exon31	c.G3404C	p.S1135T	TTTTTGCTGGCAG	.	292	90	294	0	.	112	G	91742607	C	G	91742607	3	3	11	1	0	0	0	0	1	0	0	0	7083	797	28	4	939	4	HFM1	1	91742607	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7	91742607	157508014	11	1111	9	2									
AHCYL1	10768	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110561690	110561690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AHCYL1	NM_006621	exon14	c.G1335C	p.L445F	CAATTTGAGCTGC	.	154	70	176	0	.	91	C	110561690	G	C	110561690	3	2	11	1	0	0	0	0	1	0	0	0	410	1281	45	4	1389	4	AHCYL1	1	110561690	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	18819083	110561690	138688931	12	1112											
ADORA3	140	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112042806	112042806	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ADORA3	NM_000677	exon2	c.G723A	p.L241L	CCATGACAGAGCA	.	212	58	223	0	.	156	T	112042806	C	T	112042806	2	4	11	1	0	0	0	0	0	0	0	1	329	465	17	3		3	ADORA3	1	112042806	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1481116	112042806	137207815	13	1113											
NGF	4803	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115829018	115829018	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NGF	NM_002506	exon3	c.C399T	p.F133F	CACCGAGAATTCG	.	144	60	158	0	.	1083	A	115829018	G	A	115829018	2	1	11	1	0	0	0	0	0	0	0	1	10395	933	33	3		3	NGF	1	115829018	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	3786212	115829018	133421603	14	1114											
NUDT17	200035	hgsc.bcm.edu;broad.mit.edu	37	1	145587383	145587384	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NUDT17	NM_001012758	exon6	c.697_698insC	p.G233fs	GAAGTCCGGGTGT	.	127	10	97	0	.	90	G	145587384	-	G	145587383	7	5	11	1	0	1	1	0	0	0	0	0	10734	661	23	0	301	0	NUDT17	1	145587383	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	29758365	145587383	103663238	15	1115											
POGZ	23126	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151413427	151413427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	POGZ	NM_145796	exon3	c.T260G	p.V87G	AGTGTGACAAGAG	.	459	50	404	1	.	93	C	151413427	A	C	151413427	3	2	11	1	0	0	0	0	1	0	0	0	12186	275	10	5	4054	5	POGZ	1	151413427	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	5826044	151413427	97837194	16	1116											
LCE1C	353133	hgsc.bcm.edu;broad.mit.edu	37	1	152777757	152777758	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	LCE1C	NM_178351	exon2	c.198_199insG	p.G66fs	GCAGCATCCCCCA	.	161	12	150	0	.	90	C	152777758	-	C	152777757	7	5	11	1	0	1	1	0	0	0	0	0	8661	1422	50	0	162	0	LCE1C	1	152777757	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	1364330	152777757	96472864	17	1117											
IL6R	3570	hgsc.bcm.edu;broad.mit.edu	37	1	154437759	154437760	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	IL6R	NM_000565	exon10	c.1310_1311insG	p.L437fs	GCAGCCTGGGGTC	.	172	11	158	0	.	229	G	154437760	-	G	154437759	7	5	11	1	0	1	1	0	0	0	0	0	7702	1580	55	0	1348	0	IL6R	1	154437759	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	1660002	154437759	94812862	18	1118											
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu	37	1	154842187	154842188	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KCNN3	NM_001204087	exon1	c.254_255insC	p.L85fs	TGAGACAGGGGAT	.	149	10	66	0	.	91	G	154842188	-	G	154842187	7	5	11	1	0	1	1	0	0	0	0	0	8080	188	7	0	1995	0	KCNN3	1	154842187	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	404428	154842187	94408434	19	1119											
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu	37	1	155029712	155029713	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ADAM15	NM_001261464	exon12	c.1227_1228insA	p.E409fs	CCTGGAGAAAGCC	.	157	10	76	0	.	651	A	155029713	-	A	155029712	7	5	11	1	0	1	1	0	0	0	0	0	237	933	33	0	1243	0	ADAM15	1	155029712	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	187525	155029712	94220909	20	1120											
HCN3	57657	hgsc.bcm.edu;bcgsc.ca	37	1	155255629	155255629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HCN3	NM_020897	exon6	c.C1351A	p.P451T	TTCCAGCCGGGGG	.	401	36	184	0	.	154	A	155255629	C	A	155255629	3	1	11	1	0	0	0	0	1	0	0	0	6998	739	26	3	1373	3	HCN3	1	155255629	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	225917	155255629	93994992	21	1121											
RXFP4	339403	hgsc.bcm.edu;broad.mit.edu	37	1	155912224	155912225	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RXFP4	NM_181885	exon1	c.724_725insG	p.R242fs	GACAGCAGGGTCG	.	158	10	149	0	.	90	G	155912225	-	G	155912224	7	5	11	1	0	1	1	0	0	0	0	0	13762	179	7	0	726	0	RXFP4	1	155912224	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	656595	155912224	93338397	22	1122											
ETV3L	440695	hgsc.bcm.edu;broad.mit.edu	37	1	157067713	157067714	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ETV3L	NM_001004341	exon4	c.554_555insC	p.R185fs	GGCCCTCGGGGGG	.	184	11	169	0	.	228	G	157067714	-	G	157067713	7	5	11	1	0	1	1	0	0	0	0	0	5280	884	31	0	539	0	ETV3L	1	157067713	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	1155489	157067713	92182908	23	1123											
B4GALT3	8703	hgsc.bcm.edu;broad.mit.edu	37	1	161143503	161143504	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	B4GALT3	NM_001199873	exon6	c.695_696insC	p.Q232fs	AAGTACTGGGGGT	.	147	11	130	0	.	90	G	161143504	-	G	161143503	7	5	11	1	0	1	1	0	0	0	0	0	1272	1580	55	0	498	0	B4GALT3	1	161143503	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	4075790	161143503	88107118	24	1124											
RGS4	5999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163039295	163039295	+	Silent	SNP	T	T	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RGS4	NM_001102445	exon2	c.T312A	p.G104G	TGCAGGTCTGCCG	.	146	23	140	0	.	652	A	163039295	T	A	163039295	2	1	11	1	0	0	0	0	0	0	0	1	13307	1654	58	4		4	RGS4	1	163039295	Silent	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	1895792	163039295	86211326	25	1125											
KIAA1614	57710	broad.mit.edu;bcgsc.ca	37	1	180904976	180904977	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KIAA1614	NM_020950	exon5	c.1931_1932insC	p.S644fs	GCAGCAGCCCGCG	.	77	9	60	0	.	26	C	180904977	-	C	180904976	7	5	11	1	0	1	1	0	0	0	0	0	8248	971	34	0	1949	0	KIAA1614	1	180904976	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	17865681	180904976	68345645	26	1126											
C4BPA	722	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207318042	207318042	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	C4BPA	NM_000715	exon12	c.A1774T	p.T592S	CAATCCACTTTGG	.	150	15	84	0	.	154	T	207318042	A	T	207318042	3	4	11	1	0	0	0	0	1	0	0	0	2249	159	6	4	1816	4	C4BPA	1	207318042	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	26413066	207318042	41932579	27	1127											
PCNXL2	80003	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233137318	233137318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PCNXL2	NM_014801	exon29	c.G5062A	p.A1688T	CTGGAGCTACAAC	.	354	89	313	1	.	91	T	233137318	C	T	233137318	3	4	11	1	0	0	0	0	1	0	0	0	11592	797	28	3	1375	3	PCNXL2	1	233137318	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	25819276	233137318	16113303	28	1128											
ACTN2	88	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236891012	236891012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ACTN2	NM_001103	exon6	c.C571A	p.H191N	CTCATCCACCGAC	.	163	27	111	0	.	95	A	236891012	C	A	236891012	3	1	11	1	0	0	0	0	1	0	0	0	205	594	21	3	593	3	ACTN2	1	236891012	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	3753694	236891012	12359609	29	1129											
RYR2	6262	ucsc.edu;bcgsc.ca	37	1	237433796	237433796	+	Splice_Site	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RYR2	NM_001035	exon2	c.49-1G>C	.	TTTGCAGGATGAT	.	525	63	438	1	.	158	C	237433796	G	C	237433796	5	2	11	1	0	0	0	0	0	0	1	0	13769	1014	35	4	54	4	RYR2	1	237433796	Splice_Site	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	542784	237433796	11816825	30	1130											
ZP4	57829	hgsc.bcm.edu;bcgsc.ca	37	1	238053180	238053180	+	Silent	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZP4	NM_021186	exon3	c.T387C	p.P129P	ATCCATAGGACAC	.	174	40	141	0	.	93	G	238053180	A	G	238053180	2	3	11	1	0	0	0	0	0	0	0	1	18215	407	15	2		2	ZP4	1	238053180	Silent	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	619384	238053180	11197441	31	1131											
RGS7	6000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	240976967	240976967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RGS7	NM_002924	exon13	c.T907G	p.S303A	GGTTAGAAGGGTC	.	148	71	105	0	.	232	C	240976967	A	C	240976967	3	2	11	1	0	0	0	0	1	0	0	0	13310	246	9	5	580	5	RGS7	1	240976967	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	2923787	240976967	8273654	32	1132											
OR2B11	127623	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247614658	247614658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR2B11	NM_001004492	exon1	c.C627A	p.F209L	CACGAAGAAGGCC	.	111	34	93	0	.	69	T	247614658	G	T	247614658	3	4	11	1	0	0	0	0	1	0	0	0	10988	933	33	3	329	3	OR2B11	1	247614658	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	6637691	247614658	1635963	33	1133											
PXDN	7837	broad.mit.edu;bcgsc.ca	37	2	1652251	1652251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PXDN	NM_012293	exon17	c.G3301A	p.A1101T	AGAAAGCTTTGTG	.	34	6	73	0	.	166	T	1652251	C	T	1652251	3	4	11	1	0	0	0	0	1	0	0	0	12847	797	28	3	1166	3	PXDN	2	1652251	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		1652251	241547122	34	1134											
NBAS	51594	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	15519748	15519748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NBAS	NM_015909	exon30	c.G3568T	p.D1190Y	AGCTATCAGTGAG	.	334	44	337	0	.	94	A	15519748	C	A	15519748	3	1	11	1	0	0	0	0	1	0	0	0	10186	826	29	3	3639	3	NBAS	2	15519748	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	13867497	15519748	227679625	35	1135											
NCOA1	8648	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	24991260	24991260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NCOA1	NM_003743	exon21	c.A4326T	p.X1442Y	TGAATAACCACTT	.	81	17	102	0	.	228	T	24991260	A	T	24991260	3	4	11	1	0	0	0	0	1	0	0	0	10228	50	2	4	4449	4	NCOA1	2	24991260	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	9471512	24991260	218208113	36	1136											
TTC27	55622	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33012108	33012108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TTC27	NM_017735	exon16	c.G1890T	p.Q630H	CTGGCAGATTTGG	.	153	23	187	0	.	90	T	33012108	G	T	33012108	3	4	11	1	0	0	0	0	1	0	0	0	16692	933	33	3	1952	3	TTC27	2	33012108	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	8020848	33012108	210187265	37	1137											
STON1-GTF2A1L	286749	hgsc.bcm.edu;broad.mit.edu	37	2	48809580	48809581	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	STON1-GTF2A1L	NM_001198593	exon2	c.1808_1809insG	p.L603fs	CATGTCTGGGGAG	.	164	11	151	0	.	27	G	48809581	-	G	48809580	7	5	11	1	0	1	1	0	0	0	0	0	15316	1580	55	0	1810	0	STON1-GTF2A1L	2	48809580	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	15797472	48809580	194389793	38	1138											
ANTXR1	84168	broad.mit.edu;bcgsc.ca	37	2	69472525	69472526	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ANTXR1	NM_032208	exon18	c.1603_1604insC	p.S535fs	ATCCCGTCCCCAC	.	87	9	134	0	.	94	C	69472526	-	C	69472525	7	5	11	1	0	1	1	0	0	0	0	0	711	1667	58	0	1750	0	ANTXR1	2	69472525	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	20662945	69472525	173726848	39	1139											
C2orf42	54980	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70408519	70408519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	C2orf42	NM_017880	exon3	c.G599A	p.S200N	CCCAAACTGTGCT	.	123	19	150	0	.	90	T	70408519	C	T	70408519	3	4	11	1	0	0	0	0	1	0	0	0	2166	565	20	3	1157	3	C2orf42	2	70408519	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	935994	70408519	172790854	40	1140											
DNAH6	1768	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	84774640	84774640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DNAH6	NM_001370	exon7	c.C1090T	p.R364X	GAATTTCGAAATG	.	358	149	353	1	.	69	T	84774640	C	T	84774640	4	4	11	1	0	0	0	0	0	1	0	0	4605	876	31	1	1112	1	DNAH6	2	84774640	Nonsense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	14366121	84774640	158424733	41	1141											
TCF7L1	83439	broad.mit.edu;bcgsc.ca	37	2	85536234	85536235	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TCF7L1	NM_031283	exon12	c.1416_1417insG	p.H472fs	CTCCCACGGGAGC	.	78	8	109	0	.	585	G	85536235	-	G	85536234	7	5	11	1	0	1	1	0	0	0	0	0	15694	535	19	0	1462	0	TCF7L1	2	85536234	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	761594	85536234	157663139	42	1142											
GLI2	2736	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121726367	121726367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	GLI2	NM_005270	exon5	c.G721A	p.A241T	TCAGACGCCAGCC	.	94	13	132	0	.	954	A	121726367	G	A	121726367	3	1	11	1	0	0	0	0	1	0	0	0	6438	1087	38	1	739	1	GLI2	2	121726367	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	36190133	121726367	121473006	43	1143											
R3HDM1	23518	bcgsc.ca;mdanderson.org	37	2	136409526	136409526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	R3HDM1	NM_015361	exon17	c.G1847C	p.G616A	CTGCTGGATATCC	.	176	34	184	0	.	91	C	136409526	G	C	136409526	3	2	11	1	0	0	0	0	1	0	0	0	12887	1174	41	4	1905	4	R3HDM1	2	136409526	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	14683159	136409526	106789847	44	1144											
ZEB2	9839	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	145187479	145187479	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZEB2	NM_001171653	exon3	c.C188G	p.A63G	ACACTAGCTGGAC	.	252	97	282	0	.	297	C	145187479	G	C	145187479	3	2	11	1	0	0	0	0	1	0	0	0	17621	971	34	4	3488	4	ZEB2	2	145187479	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	8777953	145187479	98011894	45	1145											
PRPF40A	55660	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153529052	153529052	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PRPF40A	NM_017892	exon13	c.T1291A	p.S431T	ACTTTGATCTTGC	.	259	89	247	0	.	68	T	153529052	A	T	153529052	3	4	11	1	0	0	0	0	1	0	0	0	12571	333	12	4	1557	4	PRPF40A	2	153529052	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	8341573	153529052	89670321	46	1146											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu	37	2	168104502	168104503	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	XIRP2	NM_152381	exon9	c.6600_6601insA	p.K2200fs	TATAAAGAAAAAG	.	172	11	153	0	.	104	A	168104503	-	A	168104502	7	5	11	1	0	1	1	0	0	0	0	0	17427	933	33	0	6630	0	XIRP2	2	168104502	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	14575450	168104502	75094871	47	1147											
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179511798	179511799	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TTN	NM_001267550	exon215	c.40215_40216insC	p.P13405fs	TTCAACAGGGGGA	.	162	18	138	0	.	636	G	179511799	-	G	179511798	7	5	11	1	0	1	1	0	0	0	0	0	16732	203	7	0		0	TTN	2	179511798	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	11407296	179511798	63687575	48	1148											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179702272	179702272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CCDC141	NM_173648	exon23	c.C3674T	p.S1225F	AGAGGGGACTCAG	.	103	14	111	0	.	78	A	179702272	G	A	179702272	3	1	11	1	0	0	0	0	1	0	0	0	2775	1174	41	3	682	3	CCDC141	2	179702272	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	190474	179702272	63497101	49	1149											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu	37	2	186673386	186673387	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FSIP2	NM_173651	exon17	c.19620_19621insA	p.P6540fs	CTTTCCTAAAAAA	.	167	12	132	0	.	90	A	186673387	-	A	186673386	7	5	11	1	0	1	1	0	0	0	0	0	6075	1509	53	0	19686	0	FSIP2	2	186673386	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	6971114	186673386	56525987	50	1150											
ITGAV	3685	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187540361	187540361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ITGAV	NM_002210	exon27	c.G2737T	p.V913F	AAGATTGTCTGCC	.	291	88	253	0	.	653	T	187540361	G	T	187540361	3	4	11	1	0	0	0	0	1	0	0	0	7888	1377	48	3	2894	3	ITGAV	2	187540361	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	866975	187540361	55659012	51	1151											
HECW2	57520	hgsc.bcm.edu;bcgsc.ca	37	2	197183465	197183465	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HECW2	NM_020760	exon9	c.G2149C	p.D717H	CTTCATCCTCCCC	.	127	9	163	0	.	668	G	197183465	C	G	197183465	3	3	11	1	0	0	0	0	1	0	0	0	7043	855	30	4	2653	4	HECW2	2	197183465	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	9643104	197183465	46015908	52	1152											
WNT6	7475	broad.mit.edu;bcgsc.ca	37	2	219735805	219735814	+	Frame_Shift_Del	DEL	GGCTGGCCGG	GGCTGGCCGG	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	GGCTGGCCGG	GGCTGGCCGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	WNT6	NM_006522	exon2	c.137_146del	p.46_49del	CACGGCGGCTGGC	.	61	7	73	0	.	564	-	219735814	GGCTGGCCGG	-	219735805	7	5	11	1	0	1	0	1	0	0	0	0	17390	1116	39	0	143	0	WNT6	2	219735805	Frame_Shift_Del	DEL	GGCTGGCCGG	TCGA-BC-A112-01A-11D-A12Z-10	22552340	219735805	23463568	53	1153											
MFF	56947	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228220420	228220420	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MFF	NM_020194	exon10	c.C840T	p.T280T	TACAACCATTGAA	.	372	127	350	0	.	153	T	228220420	C	T	228220420	2	4	11	1	0	0	0	0	0	0	0	1	9519	581	21	3		3	MFF	2	228220420	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	8484615	228220420	14978953	54	1154											
ARMC9	80210	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232135735	232135735	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ARMC9	NM_025139	exon13	c.T1160G	p.V387G	ACGTGGTGCGGCA	.	290	112	329	2	.	91	G	232135735	T	G	232135735	3	3	11	1	0	0	0	0	1	0	0	0	958	1696	59	5	1206	5	ARMC9	2	232135735	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	3915315	232135735	11063638	55	1155											
CAND2	23066	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	12854821	12854821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CAND2	NM_001162499	exon7	c.T940G	p.Y314D	CCCAACTACAACT	.	171	62	250	0	.	72	G	12854821	T	G	12854821	3	3	11	1	0	0	0	0	1	0	0	0	2616	1522	53	5	966	5	CAND2	3	12854821	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10		12854821	185167609	56	1156											
ZFYVE20	64145	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15126258	15126258	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZFYVE20	NM_022340	exon8	c.C582T	p.I194I	AAGGCTGATGAGC	.	125	65	142	0	.	92	A	15126258	G	A	15126258	2	1	11	1	0	0	0	0	0	0	0	1	17663	1280	45	3		3	ZFYVE20	3	15126258	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	2271437	15126258	182896172	57	1157											
CLASP2	23122	ucsc.edu;bcgsc.ca	37	3	33626378	33626378	+	Silent	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CLASP2	NM_015097	exon22	c.G2106C	p.L702L	TGTGGTCAGAACT	.	194	47	204	1	.	93	G	33626378	C	G	33626378	2	3	11	1	0	0	0	0	0	0	0	1	3455	813	29	4		4	CLASP2	3	33626378	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	18500120	33626378	164396052	58	1158											
TRANK1	9881	broad.mit.edu;bcgsc.ca	37	3	36899168	36899169	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TRANK1	NM_014831	exon12	c.1913_1914insC	p.Q638fs	GAACCCTGGGACT	.	60	7	115	0	.	24	G	36899169	-	G	36899168	7	5	11	1	0	1	1	0	0	0	0	0	16451	1580	55	0	6912	0	TRANK1	3	36899168	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	3272790	36899168	161123262	59	1159											
CCR2	729230	ucsc.edu;bcgsc.ca	37	3	46399449	46399449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CCR2	NM_001123041	exon2	c.A431G	p.H144R	TTGTCCATGCTGT	.	387	75	501	1	.	568	G	46399449	A	G	46399449	3	3	11	1	0	0	0	0	1	0	0	0	2941	217	8	2	433	2	CCR2	3	46399449	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	9500281	46399449	151622981	60	1160											
ALS2CL	259173	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46722787	46722787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ALS2CL	NM_001190707	exon13	c.A1385G	p.H462R	TCCCAGTGGCCCG	.	160	27	270	1	.	155	C	46722787	T	C	46722787	3	2	11	1	0	0	0	0	1	0	0	0	551	1696	59	2	1532	2	ALS2CL	3	46722787	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	323338	46722787	151299643	61	1161											
SCAP	22937	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	47476584	47476584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SCAP	NM_012235	exon3	c.G166T	p.E56X	TGAATTCCACAGG	.	108	24	167	0	.	91	A	47476584	C	A	47476584	4	1	11	1	0	0	0	0	0	1	0	0	13877	864	30	3	3757	3	SCAP	3	47476584	Nonsense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	753797	47476584	150545846	62	1162											
COL7A1	1294	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48608550	48608550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	COL7A1	NM_000094	exon93	c.G7148A	p.G2383D	GGAGGGCCAGGAG	.	99	24	125	0	.	160	T	48608550	C	T	48608550	3	4	11	1	0	0	0	0	1	0	0	0	3704	739	26	3	1790	3	COL7A1	3	48608550	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1131966	48608550	149413880	63	1163											
EBLN2	55096	hgsc.bcm.edu;broad.mit.edu	37	3	73111508	73111509	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_018029	exon1	c.276_277insC	p.E92fs	ATTGGAACCCCAA	.	148	11	151	0	.	.	C	73111509	-	C	73111508	7	5	11	1	0	1	1	0	0	0	0	0	4884	40	2	0	278	0	EBLN2	3	73111508	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	24502958	73111508	124910922	64	1164											
EBLN2	55096	hgsc.bcm.edu;broad.mit.edu	37	3	73111541	73111542	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_018029	exon1	c.309_310insA	p.I103fs	GGACATTAAAAAA	.	195	13	231	0	.	.	A	73111542	-	A	73111541	7	5	11	1	0	1	1	0	0	0	0	0	4884	1742	61	0	311	0	EBLN2	3	73111541	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	33	73111541	124910889	65	1165											
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu	37	3	99568989	99568990	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FILIP1L	NM_001042459	exon5	c.1531_1532insA	p.L511fs	TCTTTAATTTTTC	.	232	15	276	0	.	45	T	99568990	-	T	99568989	7	5	11	1	0	1	1	0	0	0	0	0	5895	98	4	0	1905	0	FILIP1L	3	99568989	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	26457448	99568989	98453441	66	1166											
SOX14	8403	hgsc.bcm.edu;bcgsc.ca	37	3	137483875	137483875	+	Silent	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SOX14	NM_004189	exon1	c.C249G	p.P83P	CAAGCCCAAGAAC	.	131	9	159	0	.	90	G	137483875	C	G	137483875	2	3	11	1	0	0	0	0	0	0	0	1	14945	581	21	4		4	SOX14	3	137483875	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	37914886	137483875	60538555	67	1167											
MED12L	116931	broad.mit.edu;bcgsc.ca	37	3	151148162	151148163	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MED12L	NM_053002	exon42	c.6379_6380insT	p.L2127fs	AAGCAGCTTTCCA	.	72	7	94	0	.	576	T	151148163	-	T	151148162	7	5	11	1	0	1	1	0	0	0	0	0	9429	797	28	0	6545	0	MED12L	3	151148162	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	13664287	151148162	46874268	68	1168											
PLCH1	23007	hgsc.bcm.edu;broad.mit.edu	37	3	155200477	155200478	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PLCH1	NM_001130960	exon23	c.3362_3363insA	p.S1121fs	AAGATGCTTTTCC	.	183	11	210	0	.	151	T	155200478	-	T	155200477	7	5	11	1	0	1	1	0	0	0	0	0	12037	797	28	0	1723	0	PLCH1	3	155200477	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	4052315	155200477	42821953	69	1169											
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	157823590	157823590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SHOX2	NM_003030	exon1	c.G224T	p.G75V	CCTCCTCCGCCTC	.	19	13	21	0	.	90	A	157823590	C	A	157823590	3	1	11	1	0	0	0	0	1	0	0	0	14289	855	30	3	867	3	SHOX2	3	157823590	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	2623113	157823590	40198840	70	1170											
NLGN1	22871	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998709	173998709	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NLGN1	NM_014932	exon7	c.C2088T	p.A696A	TGCAGCCCTGTAC	.	121	56	142	0	.	231	T	173998709	C	T	173998709	2	4	11	1	0	0	0	0	0	0	0	1	10461	610	22	3		3	NLGN1	3	173998709	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	16175119	173998709	24023721	71	1171											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	460	90	497	1	.	27752	A	178936091	G	A	178936091	3	1	11	1	0	0	0	0	1	0	0	0	11913	1291	45	3	1667	3	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4937382	178936091	19086339	72	1172											
DGKG	1608	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	185969660	185969660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DGKG	NM_001346	exon19	c.G1649A	p.S550N	AAGGGGCTCTGCT	.	145	28	220	0	.	714	T	185969660	C	T	185969660	3	4	11	1	0	0	0	0	1	0	0	0	4469	797	28	3	754	3	DGKG	3	185969660	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7033569	185969660	12052770	73	1173											
CTBP1	1487	bcgsc.ca;mdanderson.org	37	4	1206151	1206151	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CTBP1	NM_001328	exon9	c.C1200T	p.I400I	GGGGACGATACCT	.	57	11	92	2	.	91	A	1206151	G	A	1206151	2	1	11	1	0	0	0	0	0	0	0	1	3997	1048	37	1		1	CTBP1	4	1206151	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		1206151	189948125	74	1174											
ZBTB49	166793	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4303971	4303971	+	Silent	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZBTB49	NM_145291	exon3	c.A408G	p.L136L	GTCTCTACAAAGC	.	98	48	114	0	.	92	G	4303971	A	G	4303971	2	3	11	1	0	0	0	0	0	0	0	1	17547	378	14	2		2	ZBTB49	4	4303971	Silent	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	3097820	4303971	186850305	75	1175											
DRD5	1816	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	9784569	9784569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DRD5	NM_000798	exon1	c.G916A	p.V306M	GTCTTCGTGTGTT	.	49	8	66	0	.	91	A	9784569	G	A	9784569	3	1	11	1	0	0	0	0	1	0	0	0	4760	1145	40	1	918	1	DRD5	4	9784569	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	5480598	9784569	181369707	76	1176											
GUF1	60558	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	44692732	44692732	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	GUF1	NM_021927	exon12	c.1336-2A>T	.	ATTTTTAGGAACA	.	240	103	248	0	.	91	T	44692732	A	T	44692732	5	4	11	1	0	0	0	0	0	0	1	0	6899	434	15	4	1380	4	GUF1	4	44692732	Splice_Site	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	34908163	44692732	146461544	77	1177											
KDR	3791	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	55976873	55976873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KDR	NM_002253	exon8	c.C1039T	p.R347C	TGACACGCTCCCC	.	268	113	333	0	.	2298	A	55976873	G	A	55976873	3	1	11	1	0	0	0	0	1	0	0	0	8139	1087	38	1	3123	1	KDR	4	55976873	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	11284141	55976873	135177403	78	1178											
ADH1A	124	hgsc.bcm.edu;broad.mit.edu	37	4	100205756	100205757	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ADH1A	NM_000667	exon5	c.367_368insG	p.T123fs	GCAGGGTCCCCTG	.	181	12	210	0	.	227	C	100205757	-	C	100205756	7	5	11	1	0	1	1	0	0	0	0	0	307	1667	58	0	780	0	ADH1A	4	100205756	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	44228883	100205756	90948520	79	1179											
LARP7	51574	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	113568542	113568542	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	LARP7	NM_001267039	exon9	c.A855T	p.K285N	GAAAAAACGGGAC	.	248	120	273	0	.	93	T	113568542	A	T	113568542	3	4	11	1	0	0	0	0	1	0	0	0	8633	40	2	4	856	4	LARP7	4	113568542	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	13362786	113568542	77585734	80	1180											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155157446	155157447	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DCHS2	NM_017639	exon25	c.6992_6993del	p.2331_2331del	TATGGTAGAGGAA	.	227	0	191	0	.	94	-	155157447	AG	-	155157446	7	5	11	1	0	1	0	1	0	0	0	0	4288	407	15	0	1761	0	DCHS2	4	155157446	Frame_Shift_Del	DEL	AG	TCGA-BC-A112-01A-11D-A12Z-10	41588904	155157446	35996830	81	1181											
STOX2	56977	broad.mit.edu;bcgsc.ca	37	4	184931964	184931965	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	STOX2	NM_020225	exon3	c.1973_1974insA	p.P658fs	AGTCACCAAAAGG	.	74	9	68	0	.	22	A	184931965	-	A	184931964	7	5	11	1	0	1	1	0	0	0	0	0	15319	594	21	0	1983	0	STOX2	4	184931964	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	29774518	184931964	6222312	82	1182											
DNAH5	1767	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	13727745	13727745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DNAH5	NM_001369	exon70	c.G11904A	p.M3968I	TTTCCACATTTTC	.	354	118	320	0	.	182	T	13727745	C	T	13727745	3	4	11	1	0	0	0	0	1	0	0	0	4604	478	17	3	2010	3	DNAH5	5	13727745	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		13727745	167187515	83	1183											
MYO10	4651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701663	16701663	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MYO10	NM_012334	exon25	c.C2841T	p.F947F	CTCGTCGAAATTG	.	83	33	114	0	.	3	A	16701663	G	A	16701663	2	1	11	1	0	0	0	0	0	0	0	1	10062	1049	37	1		1	MYO10	5	16701663	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	2973918	16701663	164213597	84	1184											
RXFP3	51289	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33937720	33937720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RXFP3	NM_016568	exon1	c.G875A	p.R292H	TGGTGCGCTTCAT	.	151	67	117	0	.	91	A	33937720	G	A	33937720	3	1	11	1	0	0	0	0	1	0	0	0	13761	1087	38	1	877	1	RXFP3	5	33937720	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	17236057	33937720	146977540	85	1185											
SPEF2	79925	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35807028	35807028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SPEF2	NM_024867	exon35	c.C5230A	p.L1744I	AGCCACCTAAAGA	.	325	116	369	0	.	26	A	35807028	C	A	35807028	3	1	11	1	0	0	0	0	1	0	0	0	15034	680	24	3	5389	3	SPEF2	5	35807028	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1869308	35807028	145108232	86	1186											
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	53815183	53815183	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SNX18	NM_052870	exon1	c.G1401A	p.V467V	GAAGGTGGGCCAG	.	60	19	85	1	.	226	A	53815183	G	A	53815183	2	1	11	1	0	0	0	0	0	0	0	1	14889	1335	47	3		3	SNX18	5	53815183	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	18008155	53815183	127100077	87	1187											
OTP	23440	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76932769	76932769	+	Silent	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OTP	NM_032109	exon2	c.G324C	p.R108R	GCGCGTCCGGTGG	.	97	14	111	1	.	69	G	76932769	C	G	76932769	2	3	11	1	0	0	0	0	0	0	0	1	11310	842	30	4		4	OTP	5	76932769	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	23117586	76932769	103982491	88	1188											
AP3B1	8546	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	77412060	77412060	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AP3B1	NM_003664	exon19	c.1969-2A>G	.	TTTGCCTGTTTAA	.	208	22	155	0	.	90	C	77412060	T	C	77412060	5	2	11	1	0	0	0	0	0	0	1	0	744	1594	55	2	1357	2	AP3B1	5	77412060	Splice_Site	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	479291	77412060	103503200	89	1189											
ZFYVE16	9765	ucsc.edu;mdanderson.org	37	5	79739077	79739077	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZFYVE16	NM_001105251	exon6	c.C2555G	p.S852X	CAGTCTCAGCACT	.	418	51	352	1	.	90	G	79739077	C	G	79739077	4	3	11	1	0	0	0	0	0	1	0	0	17661	838	29	4	2569	4	ZFYVE16	5	79739077	Nonsense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	2327017	79739077	101176183	90	1190											
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu	37	5	96132948	96132949	+	In_Frame_Ins	INS	-	-	TCATCTTCA	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ERAP1	NM_001198541	exon4	c.728_729insTGAAGATGA	p.S243delinsMKMS	TAGGTGCTCATCT	.	239	20	281	0	.	70	TCATCTTCA	96132949	-	TCATCTTCA	96132948	7	5	11	1	0	1	1	0	0	0	0	0	5203	797	28	0	2194	0	ERAP1	5	96132948	In_Frame_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	16393871	96132948	84782312	91	1191											
AQPEP	0	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	115298764	115298764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_173800	exon1	c.C450G	p.F150L	CCTCTTCCAGGAC	.	71	16	53	0	.	.	G	115298764	C	G	115298764	3	3	11	1	0	0	0	0	1	0	0	0	834	854	30	4	452	4	AQPEP	5	115298764	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	19165816	115298764	65616496	92	1192											
RAD50	10111	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	131924503	131924503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RAD50	NM_005732	exon8	c.G1176T	p.Q392H	AAGACAGATTAAA	.	524	47	400	0	.	229	T	131924503	G	T	131924503	3	4	11	1	0	0	0	0	1	0	0	0	12984	933	33	3	1206	3	RAD50	5	131924503	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	16625739	131924503	48990757	93	1193											
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140793274	140793274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_032090	exon1	c.C532T	p.P178S	CTCAGCCCCAATA	.	72	13	72	0	.	.	T	140793274	C	T	140793274	3	4	11	1	0	0	0	0	1	0	0	0	11551	623	22	3	534	3	PCDHGA10	5	140793274	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	8868771	140793274	40121986	94	1194											
PCDHGC3	5098	hgsc.bcm.edu;bcgsc.ca	37	5	140855947	140855947	+	Silent	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PCDHGC3	NM_032402	exon1	c.G264C	p.V88V	GTTTGTGAACGAC	.	175	27	168	0	.	24	C	140855947	G	C	140855947	2	2	11	1	0	0	0	0	0	0	0	1	11569	1277	45	4		4	PCDHGC3	5	140855947	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	62673	140855947	40059313	95	1195											
CYFIP2	26999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	156714055	156714055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CYFIP2	NM_001037332	exon3	c.A145G	p.R49G	GAGGACAGGAATG	.	182	104	102	0	.	22	G	156714055	A	G	156714055	3	3	11	1	0	0	0	0	1	0	0	0	4138	179	7	2	151	2	CYFIP2	5	156714055	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	15858108	156714055	24201205	96	1196											
ADRA1B	147	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	159398905	159398905	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ADRA1B	NM_000679	exon2	c.G969A	p.L323L	CACCCTGAAGCCC	.	249	131	238	1	.	522	A	159398905	G	A	159398905	2	1	11	1	0	0	0	0	0	0	0	1	335	1277	45	3		3	ADRA1B	5	159398905	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	2684850	159398905	21516355	97	1197											
TTC1	7265	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159437629	159437629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TTC1	NM_003314	exon2	c.C94G	p.P32A	GGCCCTCCAGTTC	.	97	38	87	0	.	91	G	159437629	C	G	159437629	3	3	11	1	0	0	0	0	1	0	0	0	16675	855	30	4	96	4	TTC1	5	159437629	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	38724	159437629	21477631	98	1198											
RNF44	22838	hgsc.bcm.edu;bcgsc.ca	37	5	175957958	175957958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RNF44	NM_014901	exon5	c.C530A	p.S177Y	TCACTGGAGATGA	.	76	20	70	0	.	658	T	175957958	G	T	175957958	3	4	11	1	0	0	0	0	1	0	0	0	13496	1174	41	3	796	3	RNF44	5	175957958	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	16520329	175957958	4957302	99	1199											
TMED9	54732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	177019352	177019354	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TMED9	NM_017510	exon1	c.137_139del	p.46_47del	AGACGGAGAAGAA	.	250	0	285	0	.	90	-	177019354	AGA	-	177019352	7	5	11	1	0	1	0	1	0	0	0	0	16009	304	11	0	139	0	TMED9	5	177019352	In_Frame_Del	DEL	AGA	TCGA-BC-A112-01A-11D-A12Z-10	1061394	177019352	3895908	100	1200											
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu	37	5	177642304	177642305	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AGXT2L2	NM_153373	exon9	c.1055_1056insA	p.I352fs	TGTTTGATTTTTT	.	246	17	215	0	.	91	T	177642305	-	T	177642304	7	5	11	1	0	1	1	0	0	0	0	0	407	333	12	0	313	0	AGXT2L2	5	177642304	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	622952	177642304	3272956	101	1201											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	6145912	6145912	+	Silent	SNP	G	G	A	rs200672690		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	F13A1	NM_000129	exon15	c.C2139T	p.D713D	CAGGGAGTCACTG	.	144	61	171	0	G|0.999;A|0.001	519	A	6145912	G	A	6145912	2	1	11	1	0	0	0	0	0	0	0	1	5340	1020	36	3		3	F13A1	6	6145912	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		6145912	164969155	102	1202											
RANBP9	10048	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13657454	13657454	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RANBP9	NM_005493	exon4	c.C791G	p.S264C	CCAGAAGAACAAA	.	211	23	223	0	.	414	C	13657454	G	C	13657454	3	2	11	1	0	0	0	0	1	0	0	0	13032	942	33	4	1442	4	RANBP9	6	13657454	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	7511542	13657454	157457613	103	1203											
HIST1H4D	8360	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	26189253	26189253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HIST1H4D	NM_003539	exon1	c.C52T	p.R18C	GGTGACGCTTGGC	.	75	30	64	0	.	68	A	26189253	G	A	26189253	3	1	11	1	0	0	0	0	1	0	0	0	7168	1087	38	1	263	1	HIST1H4D	6	26189253	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	12531799	26189253	144925814	104	1204											
HIST1H2BM	8342	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27782957	27782957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HIST1H2BM	NM_003521	exon1	c.C136G	p.L46V	AAGGTGCTGAAGC	.	192	76	266	0	.	131	G	27782957	C	G	27782957	3	3	11	1	0	0	0	0	1	0	0	0	7152	796	28	4	138	4	HIST1H2BM	6	27782957	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1593704	27782957	143332110	105	1205											
BRD2	6046	hgsc.bcm.edu;ucsc.edu	37	6	32948467	32948467	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	BRD2	NM_001199455	exon13	c.C2483A	p.S828X	CGTCTTCAGACAC	.	93	27	136	0	.	398	A	32948467	C	A	32948467	4	1	11	1	0	0	0	0	0	1	0	0	1502	838	29	3	2424	3	BRD2	6	32948467	Nonsense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	5165510	32948467	138166600	106	1206											
RING1	6015	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33177781	33177781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	RING1,NS,carcinoma,0	RING1	NM_002931	exon4	c.T329G	p.I110S	CTAAGATCTATCC	.	132	39	102	0	.	159	G	33177781	T	G	33177781	3	3	11	1	0	0	0	0	1	0	0	0	13374	1435	50	5	339	5	RING1	6	33177781	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	229314	33177781	137937286	107	1207											
RPL10A	4736	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	35437288	35437288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RPL10A	NM_007104	exon4	c.A292C	p.K98Q	AATAAAAAACTGG	.	72	23	71	0	.	91	C	35437288	A	C	35437288	3	2	11	1	0	0	0	0	1	0	0	0	13555	15	1	5	306	5	RPL10A	6	35437288	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	2259507	35437288	135677779	108	1208											
CPNE5	57699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	36710124	36710124	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CPNE5	NM_020939	exon21	c.1703delC	p.P568fs	GCGGGTGGGGGAC	.	93	23	111	0	.	91	-	36710124	G	-	36710124	7	5	11	1	0	1	0	1	0	0	0	0	3815	1348	47	0	82	0	CPNE5	6	36710124	Frame_Shift_Del	DEL	G	TCGA-BC-A112-01A-11D-A12Z-10	1272836	36710124	134404943	109	1209											
DLK2	65989	hgsc.bcm.edu;broad.mit.edu	37	6	43418412	43418413	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DLK2	NM_206539	exon6	c.1017_1018insC	p.P339fs	GGGTCCAGGGGGG	.	143	11	182	0	.	68	G	43418413	-	G	43418412	7	5	11	1	0	1	1	0	0	0	0	0	4565	175	7	0	138	0	DLK2	6	43418412	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	6708288	43418412	127696655	110	1210											
SENP6	26054	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	76386875	76386875	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SENP6	NM_015571	exon14	c.C1751G	p.P584R	AAATTCCCTTTGA	.	514	162	399	1	.	660	G	76386875	C	G	76386875	3	3	11	1	0	0	0	0	1	0	0	0	14050	623	22	4	1805	4	SENP6	6	76386875	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	32968463	76386875	94728192	111	1211											
ANKRD6	22881	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90333665	90333665	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ANKRD6	NM_001242809	exon12	c.T1107G	p.N369K	TCATAATCACCCT	.	175	19	226	0	.	93	G	90333665	T	G	90333665	3	3	11	1	0	0	0	0	1	0	0	0	685	1432	50	5	1149	5	ANKRD6	6	90333665	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	13946790	90333665	80781402	112	1212											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu	37	6	90577003	90577004	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CASP8AP2	NM_012115	exon8	c.3994_3995insA	p.E1332fs	TGTACTGAAAAAA	.	168	10	145	0	.	24	A	90577004	-	A	90577003	7	5	11	1	0	1	1	0	0	0	0	0	2678	1291	45	0	4020	0	CASP8AP2	6	90577003	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	243338	90577003	80538064	113	1213											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu	37	6	143094744	143094745	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HIVEP2	NM_006734	exon5	c.1132_1133insA	p.G378fs	CTTGTCCTTTTTT	.	299	18	284	0	.	95	T	143094745	-	T	143094744	7	5	11	1	0	1	1	0	0	0	0	0	7187	690	24	0	6232	0	HIVEP2	6	143094744	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	52517741	143094744	28020323	114	1214											
LRP11	84918	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	150174142	150174142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	LRP11	NM_032832	exon2	c.G768A	p.M256I	TACCTTCATGTCC	.	146	57	199	0	.	90	T	150174142	C	T	150174142	3	4	11	1	0	0	0	0	1	0	0	0	8953	826	29	3	758	3	LRP11	6	150174142	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7079398	150174142	20940925	115	1215											
NXPH1	30010	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8791057	8791057	+	Silent	SNP	T	T	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NXPH1	NM_152745	exon3	c.T474A	p.T158T	TTCAACTGGTCAA	.	144	41	128	0	.	69	A	8791057	T	A	8791057	2	1	11	1	0	0	0	0	0	0	0	1	10790	1567	55	4		4	NXPH1	7	8791057	Silent	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10		8791057	150347606	116	1216											
SCIN	85477	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12666376	12666376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SCIN	NM_001112706	exon8	c.G1149T	p.Q383H	TCCGCAGATGGCA	.	296	105	269	0	.	24	T	12666376	G	T	12666376	3	4	11	1	0	0	0	0	1	0	0	0	13905	933	33	3	1179	3	SCIN	7	12666376	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	3875319	12666376	146472287	117	1217											
STK31	56164	hgsc.bcm.edu;broad.mit.edu	37	7	23775340	23775341	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	STK31	NM_001260505	exon7	c.667_668insA	p.E223fs	TGTGAGGAAAAAA	.	141	12	121	0	.	338	A	23775341	-	A	23775340	7	5	11	1	0	1	1	0	0	0	0	0	15295	1175	41	0	693	0	STK31	7	23775340	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	11108964	23775340	135363323	118	1218											
NPSR1	387129	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	34888201	34888202	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	.	.	.	p.NL317KM	TCAGAACCTGCCA	.	225	85	265	0	.	.	AA	34888202	CC	AA	34888201	3	1	11	1	0	0	0	0	1	0	0	0	10600	506	18	3	981	3	NPSR1	7	34888201	Missense_Mutation	DNP	CC	TCGA-BC-A112-01A-11D-A12Z-10	11112861	34888201	124250462	119	1219											
DPY19L1	23333	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35050986	35050986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DPY19L1	NM_015283	exon5	c.C407T	p.T136M	GTAACCGTCCAAC	.	367	69	364	0	.	68	A	35050986	G	A	35050986	3	1	11	1	0	0	0	0	1	0	0	0	4740	1145	40	1	1692	1	DPY19L1	7	35050986	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	162785	35050986	124087677	120	1220											
AUTS2	26053	hgsc.bcm.edu;bcgsc.ca	37	7	70255627	70255627	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AUTS2	NM_015570	exon19	c.3425delA	p.E1142fs	GGCGGGAGCACGA	.	58	13	66	0	.	92	-	70255627	A	-	70255627	7	5	11	1	0	1	0	1	0	0	0	0	1225	304	11	0	3644	0	AUTS2	7	70255627	Frame_Shift_Del	DEL	A	TCGA-BC-A112-01A-11D-A12Z-10	35204641	70255627	88883036	121	1221											
ELN	2006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73459566	73459566	+	Missense_Mutation	SNP	G	G	T	rs139718810	alternate_allele	TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ELN	NM_001081753	exon10	c.G499T	p.G167C	TTCCCCGGTGTGG	.	59	21	48	0	G|1.000;A|0.000	95	T	73459566	G	T	73459566	3	4	11	1	0	0	0	0	1	0	0	0	5071	1116	39	1	537	1	ELN	7	73459566	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	3203939	73459566	85679097	122	1222											
SRCRB4D	136853	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76029631	76029631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SRCRB4D	NM_080744	exon4	c.C447G	p.H149Q	CTCGTAGTGAAAG	.	147	51	184	0	.	91	C	76029631	G	C	76029631	3	2	11	1	0	0	0	0	1	0	0	0	15136	1020	36	4	1312	4	SRCRB4D	7	76029631	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	2570065	76029631	83109032	123	1223											
CCDC146	57639	broad.mit.edu;bcgsc.ca	37	7	76889333	76889334	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CCDC146	NM_020879	exon8	c.766_767insA	p.E256fs	GAAATGGAAAAGA	.	91	9	123	0	.	70	A	76889334	-	A	76889333	7	5	11	1	0	1	1	0	0	0	0	0	2780	1175	41	0	792	0	CCDC146	7	76889333	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	859702	76889333	82249330	124	1224											
PTPN12	5782	broad.mit.edu;bcgsc.ca	37	7	77247882	77247883	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PTPN12	NM_002835	exon12	c.1025_1026insGT	p.S342fs	CCCGCAGGTATTG	.	71	7	66	0	.	228	GT	77247883	-	GT	77247882	7	5	11	1	0	1	1	0	0	0	0	0	12781	1014	35	0	1071	0	PTPN12	7	77247882	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	358549	77247882	81890781	125	1225											
LAMB4	22798	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107763585	107763585	+	Silent	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	LAMB4	NM_007356	exon2	c.T25C	p.L9L	GGTGCAAAAAAAG	.	147	60	147	0	.	140	G	107763585	A	G	107763585	2	3	11	1	0	0	0	0	0	0	0	1	8613	11	1	2		2	LAMB4	7	107763585	Silent	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	30515703	107763585	51375078	126	1226											
CFTR	1080	broad.mit.edu;bcgsc.ca	37	7	117232304	117232305	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CFTR	NM_000492	exon14	c.2083_2084insA	p.E695fs	TTTGGGGAAAAAA	.	79	9	67	0	.	518	A	117232305	-	A	117232304	7	5	11	1	0	1	1	0	0	0	0	0	3294	1175	41	0	2137	0	CFTR	7	117232304	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	9468719	117232304	41906359	127	1227											
POT1	25913	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	124464094	124464094	+	Silent	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	POT1	NM_015450	exon19	c.A1827G	p.S609S	ATTGTATGACTTG	.	304	114	262	0	.	227	C	124464094	T	C	124464094	2	2	11	1	0	0	0	0	0	0	0	1	12260	1451	51	2		2	POT1	7	124464094	Silent	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	7231790	124464094	34674569	128	1228											
KIAA1147	57189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141362636	141362636	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KIAA1147	NM_001080392	exon9	c.A1188C	p.Q396H	GTTGTTTTGTTCT	.	118	39	99	0	.	69	G	141362636	T	G	141362636	3	3	11	1	0	0	0	0	1	0	0	0	8210	1838	64	5	183	5	KIAA1147	7	141362636	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	16898542	141362636	17776027	129	1229											
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu	37	7	143792820	143792821	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR2A12	NM_001004135	exon1	c.620_621insG	p.V207fs	TCTTAGTGGGGCC	.	143	11	133	0	.	92	G	143792821	-	G	143792820	7	5	11	1	0	1	1	0	0	0	0	0	10975	1696	59	0	622	0	OR2A12	7	143792820	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	2430184	143792820	15345843	130	1230											
KCNH2	3757	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	150671893	150671893	+	Silent	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KCNH2	NM_000238	exon2	c.G213T	p.G71G	GCGCGGCCCGTGC	.	61	17	21	0	.	94	A	150671893	C	A	150671893	2	1	11	1	0	0	0	0	0	0	0	1	8032	726	26	3		3	KCNH2	7	150671893	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	6879073	150671893	8466770	131	1231											
PDLIM2	64236	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	22438952	22438952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PDLIM2	NM_021630	exon3	c.A904G	p.I302V	GTGGCCATCAACG	.	82	25	261	0	.	90	G	22438952	A	G	22438952	3	3	11	1	0	0	0	0	1	0	0	0	11680	217	8	2	160	2	PDLIM2	8	22438952	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10		22438952	123925070	132	1232											
HGSNAT	138050	broad.mit.edu;bcgsc.ca	37	8	43002098	43002099	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HGSNAT	NM_152419	exon2	c.126_127insA	p.D42fs	CTTAGACAAAAAA	.	82	9	100	0	.	68	A	43002099	-	A	43002098	7	5	11	1	0	1	1	0	0	0	0	0	7088	477	17	0	132	0	HGSNAT	8	43002098	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	20563146	43002098	103361924	133	1233											
ST18	9705	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53092714	53092714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ST18	NM_014682	exon9	c.G245T	p.G82V	AAGGGGCCATCGT	.	260	47	354	0	.	95	A	53092714	C	A	53092714	3	1	11	1	0	0	0	0	1	0	0	0	15211	739	26	3	2970	3	ST18	8	53092714	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	10090616	53092714	93271308	134	1234											
RP1	6101	hgsc.bcm.edu;broad.mit.edu	37	8	55542461	55542462	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RP1	NM_006269	exon4	c.6019_6020insA	p.Q2007fs	AGAAAACAAAAAA	.	188	13	208	0	.	102	A	55542462	-	A	55542461	7	5	11	1	0	1	1	0	0	0	0	0	13532	479	17	0	6029	0	RP1	8	55542461	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	2449747	55542461	90821561	135	1235											
TERF1	7013	hgsc.bcm.edu;broad.mit.edu	37	8	73951354	73951355	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TERF1	NM_017489	exon9	c.1043_1044insA	p.T348fs	TAGGTACAAAAAA	.	135	11	102	0	.	228	A	73951355	-	A	73951354	7	5	11	1	0	1	1	0	0	0	0	0	15758	478	17	0	1077	0	TERF1	8	73951354	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	18408893	73951354	72412668	136	1236											
COL14A1	7373	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121326235	121326235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	COL14A1	NM_021110	exon38	c.G4520A	p.G1507E	CTCAAGGACCAAG	.	204	86	263	1	.	543	A	121326235	G	A	121326235	3	1	11	1	0	0	0	0	1	0	0	0	3671	1174	41	3	4666	3	COL14A1	8	121326235	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	47374881	121326235	25037787	137	1237											
GRINA	2907	broad.mit.edu;bcgsc.ca	37	8	145065553	145065554	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	GRINA	NM_001009184	exon2	c.162_163insC	p.Q54fs	CGGTCAGCCAGGG	.	79	8	85	0	.	90	C	145065554	-	C	145065553	7	5	11	1	0	1	1	0	0	0	0	0	6785	962	34	0	164	0	GRINA	8	145065553	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	23739318	145065553	1298469	138	1238											
CDC37L1	55664	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4706065	4706065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CDC37L1	NM_017913	exon7	c.G967A	p.V323M	AACTCGGTGGTAC	.	269	58	291	0	.	90	A	4706065	G	A	4706065	3	1	11	1	0	0	0	0	1	0	0	0	3069	1261	44	3	993	3	CDC37L1	9	4706065	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		4706065	136507366	139	1239											
JAK2	3717	hgsc.bcm.edu;broad.mit.edu	37	9	5069192	5069193	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	JAK2	NM_004972	exon11	c.1497_1498insC	p.C499fs	ATGCTGTCCCCCA	.	178	12	195	0	.	75307	C	5069193	-	C	5069192	7	5	11	1	0	1	1	0	0	0	0	0	7938	1673	58	0	1531	0	JAK2	9	5069192	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	363127	5069192	136144239	140	1240											
CNTLN	54875	broad.mit.edu;ucsc.edu	37	9	17457520	17457520	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CNTLN	NM_017738	exon19	c.3115-2A>G	.	AAAAAAAGAAGCT	.	81	5	81	0	.	91	G	17457520	A	G	17457520	5	3	11	1	0	0	0	0	0	0	1	0	3639	86	3	2	3217	2	CNTLN	9	17457520	Splice_Site	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	12388328	17457520	123755911	141	1241											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu	37	9	88247814	88247815	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AGTPBP1	NM_015239	exon14	c.1658_1659insT	p.C553fs	GTGCAGCAAAGCT	.	163	13	199	0	.	158	A	88247815	-	A	88247814	7	5	11	1	0	1	1	0	0	0	0	0	400	710	25	0	1954	0	AGTPBP1	9	88247814	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	70790294	88247814	52965617	142	1242											
FGD3	89846	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95796931	95796931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FGD3	NM_001083536	exon17	c.C1894T	p.P632S	TCAGATCCCCAGG	.	73	22	112	0	.	228	T	95796931	C	T	95796931	3	4	11	1	0	0	0	0	1	0	0	0	5834	855	30	3	1952	3	FGD3	9	95796931	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7549117	95796931	45416500	143	1243											
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu	37	9	105767323	105767324	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CYLC2	NM_001340	exon5	c.410_411insA	p.G137fs	AACAAGGAAAAAA	.	208	13	244	0	.	91	A	105767324	-	A	105767323	7	5	11	1	0	1	1	0	0	0	0	0	4142	1174	41	0	428	0	CYLC2	9	105767323	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	9970392	105767323	35446108	144	1244											
DPM2	8818	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130699764	130699764	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DPM2	NM_003863	exon2	c.C42T	p.V14V	AACGGCGACGAGG	.	129	59	147	1	.	90	A	130699764	G	A	130699764	2	1	11	1	0	0	0	0	0	0	0	1	4725	1045	37	1		1	DPM2	9	130699764	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	24932441	130699764	10513667	145	1245											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu	37	9	134501450	134501451	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RAPGEF1	NM_198679	exon10	c.1564_1565insC	p.Y522fs	GCGCGTAGGGGAC	.	157	10	199	0	.	849	G	134501451	-	G	134501450	7	5	11	1	0	1	1	0	0	0	0	0	13043	420	15	0	1783	0	RAPGEF1	9	134501450	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	3801686	134501450	6711981	146	1246											
FAM107B	83641	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	14563197	14563197	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FAM107B	NM_031453	exon5	c.G913T	p.E305X	AGGACTCCTGGGC	.	140	30	200	0	.	156	A	14563197	C	A	14563197	4	1	11	1	0	0	0	0	0	1	0	0	5390	864	30	3	11	3	FAM107B	10	14563197	Nonsense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		14563197	120971550	147	1247											
CUBN	8029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17169924	17169924	+	Splice_Site	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CUBN	NM_001081	exon4	c.253-1G>C	.	CTGGATCTAATTT	.	104	23	104	0	.	166	G	17169924	C	G	17169924	5	3	11	1	0	0	0	0	0	0	1	0	4051	927	32	4	10879	4	CUBN	10	17169924	Splice_Site	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	2606727	17169924	118364823	148	1248											
ST8SIA6	338596	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17365101	17365101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ST8SIA6	NM_001004470	exon7	c.A691T	p.N231Y	CAAGATTTGTTTT	.	266	62	354	0	.	91	A	17365101	T	A	17365101	3	1	11	1	0	0	0	0	1	0	0	0	15235	1841	64	4	513	4	ST8SIA6	10	17365101	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	195177	17365101	118169646	149	1249											
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu	37	10	27324037	27324038	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ANKRD26	NM_014915	exon24	c.3342_3343insA	p.K1114fs	TTGATACTTTTGT	.	178	13	159	0	.	138	T	27324038	-	T	27324037	7	5	11	1	0	1	1	0	0	0	0	0	654	564	20	0	1834	0	ANKRD26	10	27324037	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	9958936	27324037	108210710	150	1250											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34400172	34400172	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PARD3	NM_019619	exon25	c.G3996A	p.V1332V	GGGGGGCACATCT	.	101	53	150	0	.	92	T	34400172	C	T	34400172	2	4	11	1	0	0	0	0	0	0	0	1	11443	697	25	3		3	PARD3	10	34400172	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7076135	34400172	101134575	151	1251											
PCDH15	65217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	56128943	56128943	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PCDH15	NM_001142763	exon6	c.G426A	p.V142V	GTCTCTCACCACT	.	136	24	162	0	.	193	T	56128943	C	T	56128943	2	4	11	1	0	0	0	0	0	0	0	1	11511	813	29	3		3	PCDH15	10	56128943	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	21728771	56128943	79405804	152	1252											
MYPN	84665	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69881741	69881741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MYPN	NM_001256267	exon3	c.G546T	p.K182N	CCACAAGAGTAAA	.	85	22	111	0	.	95	T	69881741	G	T	69881741	3	4	11	1	0	0	0	0	1	0	0	0	10098	933	33	3	548	3	MYPN	10	69881741	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	13752798	69881741	65653006	153	1253											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu	37	10	89720665	89720666	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	PTEN,NS,carcinoma,+2	PTEN	NM_000314	exon8	c.816_817insT	p.H272fs	GTTTCACTTTTGG	.	218	16	139	0	.	17735	T	89720666	-	T	89720665	7	5	11	1	0	1	1	0	0	0	0	0	12738	564	20	0	846	0	PTEN	10	89720665	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	19838924	89720665	45814082	154	1254											
CPEB3	22849	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	93999727	93999727	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CPEB3	NM_014912	exon2	c.C381T	p.I127I	TGGGGTGATCCCC	.	71	18	76	0	.	90	A	93999727	G	A	93999727	2	1	11	1	0	0	0	0	0	0	0	1	3802	1280	45	3		3	CPEB3	10	93999727	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4279062	93999727	41535020	155	1255											
RRP12	23223	hgsc.bcm.edu;broad.mit.edu	37	10	99116875	99116876	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RRP12	NM_015179	exon34	c.3870_3871insA	p.N1290fs	TCTGCGGTTTTTG	.	118	11	104	0	.	92	T	99116876	-	T	99116875	7	5	11	1	0	1	1	0	0	0	0	0	13686	1252	44	0	27	0	RRP12	10	99116875	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	5117148	99116875	36417872	156	1256											
PGAM1	5223	broad.mit.edu;bcgsc.ca	37	10	99190813	99190814	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PGAM1	NM_002629	exon3	c.516_517insC	p.V172fs	AATAGTTCCCCAG	.	262	11	340	0	.	226	C	99190814	-	C	99190813	7	5	11	1	0	1	1	0	0	0	0	0	11773	1770	62	0	526	0	PGAM1	10	99190813	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	73938	99190813	36343934	157	1257											
SMNDC1	10285	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	112053908	112053908	+	Silent	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SMNDC1	NM_005871	exon6	c.A717G	p.X239X	TTCTGATTATTGA	.	132	54	159	0	.	91	C	112053908	T	C	112053908	2	2	11	1	0	0	0	0	0	0	0	1	14799	1500	52	2		2	SMNDC1	10	112053908	Silent	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	12863095	112053908	23480839	158	1258											
AFAP1L2	84632	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116060312	116060312	+	Silent	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AFAP1L2	NM_032550	exon14	c.G1680T	p.P560P	CAACGTCGGGGAG	.	88	43	126	0	.	136	A	116060312	C	A	116060312	2	1	11	1	0	0	0	0	0	0	0	1	355	871	31	1		1	AFAP1L2	10	116060312	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	4006404	116060312	19474435	159	1259											
KRTAP5-1	387264	hgsc.bcm.edu;broad.mit.edu	37	11	1605983	1605984	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KRTAP5-1	NM_001005922	exon1	c.497_498insG	p.A166fs	CCACAGGCCCCCT	.	135	11	248	0	.	44	C	1605984	-	C	1605983	7	5	11	1	0	1	1	0	0	0	0	0	8558	1203	42	0	343	0	KRTAP5-1	11	1605983	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10		1605983	133400533	160	1260											
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu	37	11	6238840	6238841	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FAM160A2	NM_032127	exon9	c.2018_2019insG	p.E673fs	AGCAGTTCCCCAG	.	157	11	297	0	.	92	C	6238841	-	C	6238840	7	5	11	1	0	1	1	0	0	0	0	0	5469	1783	62	0	958	0	FAM160A2	11	6238840	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	4632857	6238840	128767676	161	1261											
APBB1	322	hgsc.bcm.edu;broad.mit.edu	37	11	6423899	6423900	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	APBB1	NM_145689	exon7	c.1161_1162insC	p.P387fs	GCGTCCAGGGGCC	.	185	11	275	0	.	136	G	6423900	-	G	6423899	7	5	11	1	0	1	1	0	0	0	0	0	759	175	7	0	1003	0	APBB1	11	6423899	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	185059	6423899	128582617	162	1262											
OR10A2	341276	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	6891840	6891840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR10A2	NM_001004460	exon1	c.G855T	p.K285N	GGTGAAGAATGCC	.	127	43	202	0	.	113	T	6891840	G	T	6891840	3	4	11	1	0	0	0	0	1	0	0	0	10890	933	33	3	857	3	OR10A2	11	6891840	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	467941	6891840	128114676	163	1263											
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9463685	9463693	+	In_Frame_Del	DEL	AACAAAGAA	AACAAAGAA	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	AACAAAGAA	AACAAAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	IPO7	NM_006391	exon24	c.2960_2968del	p.987_990del	ATGAAGAACAAAG	.	314	0	361	0	.	271	-	9463693	AACAAAGAA	-	9463685	7	5	11	1	0	1	0	1	0	0	0	0	7797	246	9	0	3054	0	IPO7	11	9463685	In_Frame_Del	DEL	AACAAAGAA	TCGA-BC-A112-01A-11D-A12Z-10	2571845	9463685	125542831	164	1264											
SWAP70	23075	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9769515	9769515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SWAP70	NM_015055	exon10	c.G1466A	p.R489H	ATCAGCGTGTCCT	.	96	17	125	0	.	228	A	9769515	G	A	9769515	3	1	11	1	0	0	0	0	1	0	0	0	15422	1145	40	1	1504	1	SWAP70	11	9769515	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	305830	9769515	125237001	165	1265											
OR5D13	390142	hgsc.bcm.edu;ucsc.edu	37	11	55541187	55541187	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR5D13	NM_001001967	exon1	c.A274T	p.R92X	GAATACAGAACCA	.	525	110	638	0	.	71	T	55541187	A	T	55541187	4	4	11	1	0	0	0	0	0	1	0	0	11154	180	7	4	276	4	OR5D13	11	55541187	Nonsense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	45771672	55541187	79465329	166	1266											
OR5D16	390144	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55606431	55606431	+	Silent	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR5D16	NM_001005496	exon1	c.C204A	p.L68L	CCACCTCTCCTTT	.	407	89	511	0	.	73	A	55606431	C	A	55606431	2	1	11	1	0	0	0	0	0	0	0	1	11156	900	32	3		3	OR5D16	11	55606431	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	65244	55606431	79400085	167	1267											
SLC22A8	9376	broad.mit.edu;bcgsc.ca	37	11	62767298	62767299	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SLC22A8	NM_001184732	exon4	c.454_455insC	p.I152fs	TCAGGATGGGCCT	.	77	9	103	0	.	93	G	62767299	-	G	62767298	7	5	11	1	0	1	1	0	0	0	0	0	14460	1464	51	0	1206	0	SLC22A8	11	62767298	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	7160867	62767298	72239218	168	1268											
PYGM	5837	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64517976	64517976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PYGM	NM_005609	exon17	c.G2049A	p.M683I	GTTGAGCATGAAC	.	138	24	177	0	.	92	T	64517976	C	T	64517976	3	4	11	1	0	0	0	0	1	0	0	0	12862	710	25	3	495	3	PYGM	11	64517976	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1750678	64517976	70488540	169	1269											
HEPHL1	341208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	93822053	93822053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HEPHL1	NM_001098672	exon12	c.C2213A	p.A738D	ACATCGCCGCTGA	.	83	17	106	0	.	71	A	93822053	C	A	93822053	3	1	11	1	0	0	0	0	1	0	0	0	7055	739	26	3	2259	3	HEPHL1	11	93822053	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	29304077	93822053	41184463	170	1270	10	2									
HEPHL1	341208	ucsc.edu;bcgsc.ca	37	11	93822054	93822054	+	Silent	SNP	C	C	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HEPHL1	NM_001098672	exon12	c.C2214A	p.A738A	CATCGCCGCTGAA	.	83	17	106	1	.	71	A	93822054	C	A	93822054	2	1	11	1	0	0	0	0	0	0	0	1	7055	639	23	1		1	HEPHL1	11	93822054	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1	93822054	41184462	171	1271	10	2									
GUCY1A2	2977	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810544	106810544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	GUCY1A2	NM_000855	exon4	c.C848A	p.P283Q	TTGCCTGGGTTTG	.	94	22	118	0	.	589	T	106810544	G	T	106810544	3	4	11	1	0	0	0	0	1	0	0	0	6893	1348	47	3	1370	3	GUCY1A2	11	106810544	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	12988490	106810544	28195972	172	1272											
HSPB2	3316	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111784239	111784239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HSPB2	NM_001541	exon2	c.G169A	p.G57R	CCAGCTGGGGAGG	.	50	10	54	0	.	659	A	111784239	G	A	111784239	3	1	11	1	0	0	0	0	1	0	0	0	7420	1348	47	3	175	3	HSPB2	11	111784239	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4973695	111784239	23222277	173	1273											
DLAT	1737	broad.mit.edu;bcgsc.ca	37	11	111896425	111896426	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DLAT	NM_001931	exon1	c.229_230insT	p.L77fs	CTGCAGCTTTTGG	.	93	9	114	0	.	226	T	111896426	-	T	111896425	7	5	11	1	0	1	1	0	0	0	0	0	4549	797	28	0	231	0	DLAT	11	111896425	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	112186	111896425	23110091	174	1274											
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu	37	11	111953315	111953316	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	C11orf57	NM_001082969	exon6	c.501_502insA	p.H167fs	GTCACACAAAAAA	.	242	15	305	0	.	155	A	111953316	-	A	111953315	7	5	11	1	0	1	1	0	0	0	0	0	1650	477	17	0	519	0	C11orf57	11	111953315	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	56890	111953315	23053201	175	1275											
SIDT2	51092	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117053474	117053474	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SIDT2	NM_001040455	exon6	c.C654T	p.F218F	AGCCTTCATCGGC	.	108	25	136	2	.	90	T	117053474	C	T	117053474	2	4	11	1	0	0	0	0	0	0	0	1	14303	825	29	3		3	SIDT2	11	117053474	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	5100159	117053474	17953042	176	1276											
TMPRSS4	56649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117979580	117979580	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TMPRSS4	NM_019894	exon7	c.C552T	p.L184L	CTGTCTCTCAGGC	.	76	40	107	0	.	90	T	117979580	C	T	117979580	2	4	11	1	0	0	0	0	0	0	0	1	16246	900	32	3		3	TMPRSS4	11	117979580	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	926106	117979580	17026936	177	1277											
RNF26	79102	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	119206969	119206969	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RNF26	NM_032015	exon1	c.G1137C	p.K379N	GAAGAAGTGTGTC	.	61	9	82	0	.	227	C	119206969	G	C	119206969	3	2	11	1	0	0	0	0	1	0	0	0	13486	1020	36	4	1139	4	RNF26	11	119206969	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	1227389	119206969	15799547	178	1278											
OR6X1	390260	hgsc.bcm.edu;broad.mit.edu	37	11	123624382	123624383	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR6X1	NM_001005188	exon1	c.845_846insC	p.L282fs	TTCAGAAGGGGGG	.	144	10	168	0	.	71	G	123624383	-	G	123624382	7	5	11	1	0	1	1	0	0	0	0	0	11212	72	3	0	95	0	OR6X1	11	123624382	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	4417413	123624382	11382134	179	1279											
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu	37	11	128842442	128842443	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ARHGAP32	NM_001142685	exon21	c.3917_3918insC	p.L1306fs	GGGGGAAGGGGAC	.	169	11	227	0	.	231	G	128842443	-	G	128842442	7	5	11	1	0	1	1	0	0	0	0	0	881	72	3	0	2354	0	ARHGAP32	11	128842442	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	5218060	128842442	6164074	180	1280											
RAD52	5893	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	1023279	1023279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RAD52	NM_134424	exon11	c.G976C	p.E326Q	TGTCTTCAAGAGT	.	125	18	144	0	.	227	G	1023279	C	G	1023279	3	3	11	1	0	0	0	0	1	0	0	0	12991	835	29	4	288	4	RAD52	12	1023279	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		1023279	132828616	181	1281											
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu	37	12	19427544	19427545	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PLEKHA5	NM_001256470	exon11	c.940_941insA	p.Q314fs	AACAATCAAAAAA	.	145	10	133	0	.	227	A	19427545	-	A	19427544	7	5	11	1	0	1	1	0	0	0	0	0	12059	827	29	0	960	0	PLEKHA5	12	19427544	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	18404265	19427544	114424351	182	1282											
SLCO1B1	10599	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	21329794	21329794	+	Silent	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SLCO1B1	NM_006446	exon5	c.A444G	p.L148L	AATTTTATCACTC	.	266	80	274	0	.	97	G	21329794	A	G	21329794	2	3	11	1	0	0	0	0	0	0	0	1	14723	446	16	2		2	SLCO1B1	12	21329794	Silent	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	1902250	21329794	112522101	183	1283											
BICD1	636	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	32490708	32490708	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	BICD1	NM_001714	exon7	c.A2528T	p.Q843L	GCCCACAGACACC	.	105	16	98	0	.	153	T	32490708	A	T	32490708	3	4	11	1	0	0	0	0	1	0	0	0	1428	188	7	4	2554	4	BICD1	12	32490708	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	11160914	32490708	101361187	184	1284											
FGD4	121512	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	32760995	32760995	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FGD4	NM_139241	exon8	c.G1098A	p.L366L	GAAATTGCCTCCT	.	328	107	344	0	.	229	A	32760995	G	A	32760995	2	1	11	1	0	0	0	0	0	0	0	1	5835	1310	46	3		3	FGD4	12	32760995	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	270287	32760995	101090900	185	1285											
ABCD2	225	hgsc.bcm.edu;broad.mit.edu	37	12	40013265	40013266	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ABCD2	NM_005164	exon1	c.153_154insA	p.K51fs	TTTTTTCTTCCCG	.	166	10	163	0	.	95	T	40013266	-	T	40013265	7	5	11	1	0	1	1	0	0	0	0	0	61	912	32	0	2109	0	ABCD2	12	40013265	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	7252270	40013265	93838630	186	1286											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu	37	12	46246025	46246026	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ARID2	NM_152641	exon15	c.4119_4120insA	p.S1373fs	TTTAAGCAAAAAC	.	198	12	165	0	.	100	A	46246026	-	A	46246025	7	5	11	1	0	1	1	0	0	0	0	0	915	709	25	0	4177	0	ARID2	12	46246025	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	6232760	46246025	87605870	187	1287											
DDN	23109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49391730	49391730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DDN	NM_015086	exon2	c.G929C	p.G310A	CCCTTGCCGGGCT	.	100	16	101	0	.	90	G	49391730	C	G	49391730	3	3	11	1	0	0	0	0	1	0	0	0	4333	739	26	4	1210	4	DDN	12	49391730	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	3145705	49391730	84460165	188	1288											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49425625	49425626	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MLL2	NM_003482	exon39	c.12863_12864insC	p.R4288fs	GGGAGCCGGGGTG	.	165	11	239	0	.	612	G	49425626	-	G	49425625	7	5	11	1	0	1	1	0	0	0	0	0	9621	652	23	0	3814	0	MLL2	12	49425625	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	33895	49425625	84426270	189	1289											
KRT78	196374	broad.mit.edu;bcgsc.ca	37	12	53242576	53242577	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KRT78	NM_173352	exon1	c.139_140insG	p.C47fs	CCAGGCACCCCCC	.	79	8	96	0	.	188	C	53242577	-	C	53242576	7	5	11	1	0	1	1	0	0	0	0	0	8491	159	6	0	1459	0	KRT78	12	53242576	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	3816951	53242576	80609319	190	1290											
HOXC10	3226	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54382990	54382990	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HOXC10	NM_017409	exon2	c.G789A	p.L263L	TTGGCTGACAGCA	.	200	25	220	0	.	91	A	54382990	G	A	54382990	2	1	11	1	0	0	0	0	0	0	0	1	7309	1277	45	3		3	HOXC10	12	54382990	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	1140414	54382990	79468905	191	1291											
HOXC8	3224	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54404963	54404963	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	HOXC8	NM_022658	exon2	c.G527C	p.R176P	TGACACGAAAACG	.	116	20	105	0	.	91	C	54404963	G	C	54404963	3	2	11	1	0	0	0	0	1	0	0	0	7316	1058	37	4	533	4	HOXC8	12	54404963	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	21973	54404963	79446932	192	1292											
OR10A7	121364	broad.mit.edu;bcgsc.ca	37	12	55614789	55614810	+	Frame_Shift_Del	DEL	GAGAGAAACTCATCTAAGATAT	GAGAGAAACTCATCTAAGATAT	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	GAGAGAAACTCATCTAAGATAT	GAGAGAAACTCATCTAAGATAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR10A7	NM_001005280	wholegene			TTTTTAGAGAGAA	.	243	0	227	0	.	72	-	55614810	GAGAGAAACTCATCTAAGATAT	-	55614789	7	5	11	1	0	1	0	1	0	0	0	0	10895	957	33	0		0	OR10A7	12	55614789	Frame_Shift_Del	DEL	GAGAGAAACTCATCTAAGATAT	TCGA-BC-A112-01A-11D-A12Z-10	1209826	55614789	78237106	193	1293											
OR6C4	341418	hgsc.bcm.edu;broad.mit.edu	37	12	55945306	55945307	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR6C4	NM_001005494	exon1	c.296_297insT	p.Y99fs	CTCAGTATTTTTT	.	218	18	206	0	.	68	T	55945307	-	T	55945306	7	5	11	1	0	1	1	0	0	0	0	0	11193	449	16	0	298	0	OR6C4	12	55945306	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	330517	55945306	77906589	194	1294											
PA2G4	5036	bcgsc.ca;mdanderson.org	37	12	56500791	56500791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PA2G4	NM_006191	exon3	c.A235G	p.S79G	CCCACCAGCATTT	.	300	42	316	1	.	68	G	56500791	A	G	56500791	3	3	11	1	0	0	0	0	1	0	0	0	11361	188	7	2	245	2	PA2G4	12	56500791	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	555485	56500791	77351104	195	1295											
ZBTB39	9880	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57397205	57397205	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZBTB39	NM_014830	exon2	c.G1497A	p.T499T	GGACAGCGTGTGC	.	63	14	63	0	.	135	T	57397205	C	T	57397205	2	4	11	1	0	0	0	0	0	0	0	1	17537	755	27	1		1	ZBTB39	12	57397205	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	896414	57397205	76454690	196	1296											
SLC25A3	5250	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	98991699	98991699	+	Silent	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SLC25A3	NM_005888	exon4	c.T348C	p.V116V	TGGTGTTCGTGGT	.	458	172	410	0	.	90	C	98991699	T	C	98991699	2	2	11	1	0	0	0	0	0	0	0	1	14493	1770	62	2		2	SLC25A3	12	98991699	Silent	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	41594494	98991699	34860196	197	1297											
UTP20	27340	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	101711355	101711355	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	UTP20	NM_014503	exon22	c.C2652T	p.A884A	ACCTGCCGCAGGA	.	141	32	138	0	.	155	T	101711355	C	T	101711355	2	4	11	1	0	0	0	0	0	0	0	1	17096	639	23	1		1	UTP20	12	101711355	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	2719656	101711355	32140540	198	1298											
ACACB	32	hgsc.bcm.edu;ucsc.edu	37	12	109617830	109617830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ACACB	NM_001093	exon10	c.C1756T	p.Q586X	CGCTTGCAGGTGG	.	157	49	152	0	.	98	T	109617830	C	T	109617830	4	4	11	1	0	0	0	0	0	1	0	0	107	711	25	3	1794	3	ACACB	12	109617830	Nonsense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7906475	109617830	24234065	199	1299											
MLEC	9761	broad.mit.edu;bcgsc.ca	37	12	121134204	121134205	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MLEC	NM_014730	exon5	c.735_736insA	p.L245fs	TAATCTCAAAAAA	.	68	7	83	0	.	91	A	121134205	-	A	121134204	7	5	11	1	0	1	1	0	0	0	0	0	9613	813	29	0	753	0	MLEC	12	121134204	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	11516374	121134204	12717691	200	1300											
KNTC1	9735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123097712	123097712	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KNTC1	NM_014708	exon54	c.T5676G	p.C1892W	TCAGTGTCTCTTC	.	177	63	158	0	.	543	G	123097712	T	G	123097712	3	3	11	1	0	0	0	0	1	0	0	0	8428	1673	58	5	5886	5	KNTC1	12	123097712	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	1963508	123097712	10754183	201	1301											
TUBA3C	7278	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	19751669	19751669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TUBA3C	NM_006001	exon4	c.C454G	p.L152V	TGAGCAGAGATGC	.	358	78	570	0	.	95	C	19751669	G	C	19751669	3	2	11	1	0	0	0	0	1	0	0	0	16743	933	33	4	906	4	TUBA3C	13	19751669	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		19751669	95418209	202	1302											
XPO4	64328	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21418016	21418016	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	XPO4	NM_022459	exon5	c.G466C	p.A156P	AACAGGCCAGAGT	.	62	11	79	0	.	272	G	21418016	C	G	21418016	3	3	11	1	0	0	0	0	1	0	0	0	17443	739	26	4	3065	4	XPO4	13	21418016	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1666347	21418016	93751862	203	1303											
ELF1	1997	hgsc.bcm.edu;broad.mit.edu	37	13	41507921	41507922	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ELF1	NM_172373	exon9	c.1500_1501insG	p.G500fs	GGCAGGGCCCAAG	.	179	11	207	0	.	227	C	41507922	-	C	41507921	7	5	11	1	0	1	1	0	0	0	0	0	5053	1190	42	0	363	0	ELF1	13	41507921	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	20089905	41507921	73661957	204	1304											
KCTD4	386618	hgsc.bcm.edu;broad.mit.edu	37	13	45768382	45768383	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KCTD4	NM_198404	exon2	c.321_322insA	p.N107fs	AAGTTGATTTTCT	.	175	11	241	0	.	90	T	45768383	-	T	45768382	7	5	11	1	0	1	1	0	0	0	0	0	8111	330	12	0	462	0	KCTD4	13	45768382	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	4260461	45768382	69401496	205	1305											
APEX1	328	hgsc.bcm.edu;broad.mit.edu	37	14	20925388	20925389	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	APEX1	NM_080648	exon5	c.678_679insA	p.N226fs	GGGGAACAAAAAG	.	169	12	206	0	.	661	A	20925389	-	A	20925388	7	5	11	1	0	1	1	0	0	0	0	0	769	477	17	0	692	0	APEX1	14	20925388	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10		20925388	86424152	206	1306											
OR6S1	341799	broad.mit.edu;bcgsc.ca	37	14	21109759	21109760	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR6S1	NM_001001968	exon1	c.92_93insT	p.S31fs	AACACAGAAAATA	.	74	8	103	0	.	70	A	21109760	-	A	21109759	7	5	11	1	0	1	1	0	0	0	0	0	11209	942	33	0	907	0	OR6S1	14	21109759	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	184371	21109759	86239781	207	1307											
RABGGTA	5875	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24738189	24738189	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_004581	exon7	c.G726A	p.Q242Q	TGCATCCTGGGGG	.	128	29	150	0	.	.	T	24738189	C	T	24738189	2	4	11	1	0	0	0	0	0	0	0	1	12967	680	24	3		3	RABGGTA	14	24738189	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	3628430	24738189	82611351	208	1308											
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu	37	14	45564691	45564692	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PRPF39	NM_017922	exon2	c.249_250insT	p.K83fs	TGAAAAATTTTGG	.	166	10	176	0	.	70	T	45564692	-	T	45564691	7	5	11	1	0	1	1	0	0	0	0	0	12569	98	4	0	251	0	PRPF39	14	45564691	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	20826502	45564691	61784849	209	1309											
ATP6V1D	51382	hgsc.bcm.edu;broad.mit.edu	37	14	67819690	67819691	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ATP6V1D	NM_015994	exon2	c.109_110insA	p.S37fs	CATCAGATTTTTT	.	184	11	202	0	.	659	T	67819691	-	T	67819690	7	5	11	1	0	1	1	0	0	0	0	0	1182	333	12	0	666	0	ATP6V1D	14	67819690	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	22254999	67819690	39529850	210	1310											
DCAF5	8816	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69584924	69584924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DCAF5	NM_003861	exon4	c.A467G	p.N156S	AAAATGTTGTCAT	.	90	16	125	0	.	91	C	69584924	T	C	69584924	3	2	11	1	0	0	0	0	1	0	0	0	4273	1725	60	2	2385	2	DCAF5	14	69584924	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	1765234	69584924	37764616	211	1311											
TSHR	7253	hgsc.bcm.edu;broad.mit.edu	37	14	81609512	81609513	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TSHR	NM_000369	exon10	c.1110_1111insA	p.L370fs	GGAGCTCAAAAAC	.	188	12	213	0	.	1650	A	81609513	-	A	81609512	7	5	11	1	0	1	1	0	0	0	0	0	16619	813	29	0	1285	0	TSHR	14	81609512	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	12024588	81609512	25740028	212	1312											
PTPN21	11099	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	88938677	88938677	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PTPN21	NM_007039	exon15	c.C2782T	p.Q928X	CATCTTGGAATCG	.	284	51	358	0	.	230	A	88938677	G	A	88938677	4	1	11	1	0	0	0	0	0	1	0	0	12786	1357	47	3	762	3	PTPN21	14	88938677	Nonsense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	7329165	88938677	18410863	213	1313											
ATXN3	4287	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92548653	92548653	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ATXN3	NM_004993	exon8	c.A766C	p.S256R	GCATACTTAGCTG	.	149	27	169	0	.	522	G	92548653	T	G	92548653	3	3	11	1	0	0	0	0	1	0	0	0	1213	1609	56	5	335	5	ATXN3	14	92548653	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	3609976	92548653	14800887	214	1314											
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	105609430	105609430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	JAG2	NM_002226	exon26	c.C3319T	p.R1107C	GCTTGCGTGTCCA	.	14	7	27	0	.	846	A	105609430	G	A	105609430	3	1	11	1	0	0	0	0	1	0	0	0	7935	1145	40	1	401	1	JAG2	14	105609430	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	13060777	105609430	1740110	215	1315											
RAD51	5888	hgsc.bcm.edu;broad.mit.edu	37	15	41022163	41022164	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RAD51	NM_001164269	exon9	c.890_891insA	p.S297fs	ATGCATCAACAAC	.	164	10	185	0	.	563	A	41022164	-	A	41022163	7	5	11	1	0	1	1	0	0	0	0	0	12985	838	29	0	1042	0	RAD51	15	41022163	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10		41022163	61509229	216	1316											
CAPN3	825	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	42703132	42703132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CAPN3	NM_000070	exon22	c.G2314A	p.D772N	TACGCAGACAAAC	.	204	51	240	0	.	514	A	42703132	G	A	42703132	3	1	11	1	0	0	0	0	1	0	0	0	2628	942	33	3	2452	3	CAPN3	15	42703132	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	1680969	42703132	59828260	217	1317											
KBTBD13	390594	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	65369217	65369217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_001101362	exon1	c.C64T	p.R22C	GCCGACCGCGCCC	.	25	14	21	0	.	.	T	65369217	C	T	65369217	3	4	11	1	0	0	0	0	1	0	0	0	7992	652	23	1	66	1	KBTBD13	15	65369217	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	22666085	65369217	37162175	218	1318											
MEF2A	4205	broad.mit.edu;bcgsc.ca	37	15	100252792	100252792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MEF2A	NM_005587	exon11	c.G1316T	p.R439L	AGCCCCGACAGGA	.	36	7	51	0	.	455	T	100252792	G	T	100252792	3	4	11	1	0	0	0	0	1	0	0	0	9455	1058	37	1	1514	1	MEF2A	15	100252792	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	34883575	100252792	2278600	219	1319											
MSLN	10232	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	812697	812697	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MSLN	NM_005823	exon3	c.C17G	p.A6G	CAACGGCTCGACC	.	159	29	131	0	.	91	G	812697	C	G	812697	3	3	11	1	0	0	0	0	1	0	0	0	9881	797	28	4	19	4	MSLN	16	812697	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		812697	89542056	220	1320											
UNKL	64718	hgsc.bcm.edu;broad.mit.edu	37	16	1417771	1417772	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	UNKL	NM_001193388	exon13	c.1674_1675insC	p.P558fs	AGAGGATGGGGGG	.	185	11	196	0	.	90	G	1417772	-	G	1417771	7	5	11	1	0	1	1	0	0	0	0	0	16998	1451	51	0	539	0	UNKL	16	1417771	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	605074	1417771	88936982	221	1321											
OR2C1	4993	hgsc.bcm.edu;bcgsc.ca	37	16	3406154	3406154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	OR2C1	NM_012368	exon1	c.G214A	p.A72T	GACCTTGCTTTCG	.	520	34	292	0	.	69	A	3406154	G	A	3406154	3	1	11	1	0	0	0	0	1	0	0	0	10992	1319	46	3	216	3	OR2C1	16	3406154	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	1988383	3406154	86948599	222	1322											
SRL	6345	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	4242512	4242512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SRL	NM_001098814	exon6	c.A1064T	p.K355M	TTGTCCTTGTAAG	.	263	43	233	0	.	73	A	4242512	T	A	4242512	3	1	11	1	0	0	0	0	1	0	0	0	15149	1609	56	4	361	4	SRL	16	4242512	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	836358	4242512	86112241	223	1323											
TMEM186	25880	hgsc.bcm.edu;bcgsc.ca	37	16	8890210	8890210	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TMEM186	NM_015421	exon2	c.C241G	p.L81V	CTGTCAGGGCAGT	.	123	8	129	0	.	91	C	8890210	G	C	8890210	3	2	11	1	0	0	0	0	1	0	0	0	16105	991	35	4	404	4	TMEM186	16	8890210	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4647698	8890210	81464543	224	1324											
ERI2	112479	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	20810230	20810230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ERI2	NM_001142725	exon9	c.A892G	p.I298V	CACAAATTGACTT	.	605	189	427	0	.	153	C	20810230	T	C	20810230	3	2	11	1	0	0	0	0	1	0	0	0	5228	1493	52	2	1454	2	ERI2	16	20810230	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	11920020	20810230	69544523	225	1325											
USP31	57478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23093878	23093878	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	USP31	NM_020718	exon12	c.C1831G	p.L611V	GGGCAAGCTGAAA	.	168	30	133	0	.	663	C	23093878	G	C	23093878	3	2	11	1	0	0	0	0	1	0	0	0	17059	985	34	4	2247	4	USP31	16	23093878	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	2283648	23093878	67260875	226	1326											
RBL2	5934	hgsc.bcm.edu;broad.mit.edu	37	16	53513829	53513830	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RBL2	NM_005611	exon19	c.2807_2808insA	p.R936fs	GGAAAAGAAAAAG	.	151	10	269	0	.	841	A	53513830	-	A	53513829	7	5	11	1	0	1	1	0	0	0	0	0	13110	942	33	0	2881	0	RBL2	16	53513829	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	30419951	53513829	36840924	227	1327											
CMTM1	113540	hgsc.bcm.edu;broad.mit.edu	37	16	66600574	66600575	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CMTM1	NM_181268	exon1	c.158_159insC	p.H53fs	GGAAGCACCCCGC	.	139	10	209	0	.	90	C	66600575	-	C	66600574	7	5	11	1	0	1	1	0	0	0	0	0	3582	159	6	0	160	0	CMTM1	16	66600574	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	13086745	66600574	23754179	228	1328											
DYNC1LI2	1783	broad.mit.edu;bcgsc.ca	37	16	66761590	66761591	+	Splice_Site	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DYNC1LI2	NM_006141	exon12	c.1261+1->A	.	TACATACTTTTGA	.	65	7	80	0	.	93	T	66761591	-	T	66761590	8	5	11	1	0	1	1	0	0	0	1	0	4845	579	20	0	228	0	DYNC1LI2	16	66761590	Splice_Site	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	161016	66761590	23593163	229	1329											
NFATC3	4775	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	68224766	68224766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NFATC3	NM_173163	exon9	c.G2194C	p.D732H	TCCTCTGATTCAG	.	185	14	217	0	.	92	C	68224766	G	C	68224766	3	2	11	1	0	0	0	0	1	0	0	0	10364	1290	45	4	2228	4	NFATC3	16	68224766	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	1463176	68224766	22129987	230	1330											
CMIP	80790	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	81736275	81736275	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	NM_198390	exon17	c.1944+1G>A	.	TCCACAGTGAGTT	.	722	368	934	2	.	.	A	81736275	G	A	81736275	5	1	11	1	0	0	0	0	0	0	1	0	3578	1043	36	3	2033	3	CMIP	16	81736275	Splice_Site	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	13511509	81736275	8618478	231	1331											
IL17C	27189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88705412	88705412	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	IL17C	NM_013278	exon2	c.G30A	p.L10L	GTTTCTGACCTGG	.	142	23	185	0	.	90	A	88705412	G	A	88705412	2	1	11	1	0	0	0	0	0	0	0	1	7636	1277	45	3		3	IL17C	16	88705412	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	6969137	88705412	1649341	232	1332											
RNF166	115992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88766049	88766049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RNF166	NM_178841	exon3	c.C404A	p.P135H	GATGTGGGCACCA	.	94	52	135	0	.	226	T	88766049	G	T	88766049	3	4	11	1	0	0	0	0	1	0	0	0	13457	1232	43	3	325	3	RNF166	16	88766049	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	60637	88766049	1588704	233	1333											
SPATA2L	124044	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89764069	89764069	+	Silent	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SPATA2L	NM_152339	exon3	c.G948C	p.L316L	CCTACTCAGCTCA	.	91	18	65	0	.	90	G	89764069	C	G	89764069	2	3	11	1	0	0	0	0	0	0	0	1	15008	813	29	4		4	SPATA2L	16	89764069	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	998020	89764069	590684	234	1334											
SGSM2	9905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2282729	2282729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SGSM2	NM_014853	exon24	c.G3071A	p.R1024H	CAGAACGTGCTGA	.	126	19	161	1	.	68	A	2282729	G	A	2282729	3	1	11	1	0	0	0	0	1	0	0	0	14223	1145	40	1	3165	1	SGSM2	17	2282729	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		2282729	78912481	235	1335											
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu	37	17	5462267	5462268	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NLRP1	NM_014922	exon4	c.1749_1750insA	p.K583fs	AAGGGTCTTTTTT	.	158	11	219	0	.	274	T	5462268	-	T	5462267	7	5	11	1	0	1	1	0	0	0	0	0	10471	912	32	0	2803	0	NLRP1	17	5462267	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	3179538	5462267	75732943	236	1336											
SENP3	26168	hgsc.bcm.edu;ucsc.edu	37	17	7470288	7470288	+	Missense_Mutation	SNP	A	A	G	rs76586164		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SENP3	NM_015670	exon8	c.A1307G	p.K436R	TACCAAAGGGTTA	.	209	20	405	0	A|0.500;G|0.500	659	G	7470288	A	G	7470288	3	3	11	1	0	0	0	0	1	0	0	0	14048	69	3	2	1330	2	SENP3	17	7470288	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	2008021	7470288	73724922	237	1337											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7701533	7701533	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DNAH2	NM_020877	exon53	c.C8289T	p.I2763I	GGGTATCGGGGGC	.	46	30	86	0	.	102	T	7701533	C	T	7701533	2	4	11	1	0	0	0	0	0	0	0	1	4602	874	31	1		1	DNAH2	17	7701533	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	231245	7701533	73493677	238	1338											
SUPT6H	6830	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	27001353	27001353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SUPT6H	NM_003170	exon3	c.G162T	p.L54F	CAACTTGAAAGGC	.	284	31	192	0	.	93	T	27001353	G	T	27001353	3	4	11	1	0	0	0	0	1	0	0	0	15397	1281	45	3	168	3	SUPT6H	17	27001353	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	19299820	27001353	54193857	239	1339											
CDK12	51755	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	37627327	37627327	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CDK12	NM_016507	exon2	c.G1242C	p.K414N	AGCAAAGATGGAT	.	174	26	119	0	.	1055	C	37627327	G	C	37627327	3	2	11	1	0	0	0	0	1	0	0	0	3128	933	33	4	1248	4	CDK12	17	37627327	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	10625974	37627327	43567883	240	1340											
CDK12	51755	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37687306	37687306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CDK12	NM_016507	exon14	c.C4210T	p.R1404C	GACCTCCGTTTTG	.	112	13	138	0	.	1055	T	37687306	C	T	37687306	3	4	11	1	0	0	0	0	1	0	0	0	3128	652	23	1	4264	1	CDK12	17	37687306	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	59979	37687306	43507904	241	1341											
KLHL10	317719	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40004434	40004434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KLHL10	NM_152467	exon5	c.A1702C	p.S568R	GCTCTGAGCTGCT	.	387	200	270	0	.	227	C	40004434	A	C	40004434	3	2	11	1	0	0	0	0	1	0	0	0	8366	304	11	5	1720	5	KLHL10	17	40004434	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	2317128	40004434	41190776	242	1342											
KLHL11	55175	hgsc.bcm.edu;bcgsc.ca	37	17	40010740	40010740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KLHL11	NM_018143	exon2	c.G1379A	p.G460E	CCATGTCCTCCAA	.	498	45	350	0	.	90	T	40010740	C	T	40010740	3	4	11	1	0	0	0	0	1	0	0	0	8367	855	30	3	751	3	KLHL11	17	40010740	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	6306	40010740	41184470	243	1343											
EZH1	2145	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40871173	40871173	+	Silent	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	EZH1	NM_001991	exon8	c.A717G	p.A239A	GGCAATTGCACTG	.	325	45	266	0	.	229	C	40871173	T	C	40871173	2	2	11	1	0	0	0	0	0	0	0	1	5333	1799	63	2		2	EZH1	17	40871173	Silent	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	860433	40871173	40324037	244	1344											
BRCA1	672	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	41223109	41223109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	BRCA1	NM_007300	exon16	c.G4885A	p.A1629T	ATTCTGCAACTTT	.	262	40	195	0	.	3415	T	41223109	C	T	41223109	3	4	11	1	0	0	0	0	1	0	0	0	1498	710	25	3	805	3	BRCA1	17	41223109	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	351936	41223109	39972101	245	1345											
MYL4	4635	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45299202	45299202	+	Silent	SNP	G	G	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MYL4	NM_001002841	exon5	c.G468C	p.R156R	GCTTCGGCACGTC	.	167	83	144	0	.	92	C	45299202	G	C	45299202	2	2	11	1	0	0	0	0	0	0	0	1	10049	1190	42	4		4	MYL4	17	45299202	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4076093	45299202	35896008	246	1346											
SPAG9	9043	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	49075937	49075937	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SPAG9	NM_001130528	exon15	c.A1706C	p.K569T	TCAGGCTTCTTAG	.	386	47	288	0	.	659	G	49075937	T	G	49075937	3	3	11	1	0	0	0	0	1	0	0	0	14985	1609	56	5	2323	5	SPAG9	17	49075937	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	3776735	49075937	32119273	247	1347											
BZRAP1	9256	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56389687	56389687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	BZRAP1	NM_004758	exon17	c.G2495A	p.R832Q	GCCTGTCGCAGCT	.	85	15	92	0	.	229	T	56389687	C	T	56389687	3	4	11	1	0	0	0	0	1	0	0	0	1577	884	31	1	3138	1	BZRAP1	17	56389687	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7313750	56389687	24805523	248	1348											
FADS6	283985	broad.mit.edu;mdanderson.org	37	17	72889516	72889516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	FADS6	NM_178128	exon1	c.G178A	p.A60T	GCAAGGCGAAGAG	.	32	6	25	0	.	22	T	72889516	C	T	72889516	3	4	11	1	0	0	0	0	1	0	0	0	5368	768	27	1	898	1	FADS6	17	72889516	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	16499829	72889516	8305694	249	1349											
EVPL	2125	broad.mit.edu;bcgsc.ca	37	17	74003866	74003867	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	EVPL	NM_001988	exon22	c.5420_5421insC	p.Q1807fs	GTGCTCTGGGGGG	.	131	13	133	0	.	93	G	74003867	-	G	74003866	7	5	11	1	0	1	1	0	0	0	0	0	5292	1580	55	0	685	0	EVPL	17	74003866	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	1114350	74003866	7191344	250	1350											
CBX4	8535	hgsc.bcm.edu;broad.mit.edu	37	17	77808830	77808831	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CBX4	NM_003655	exon5	c.611_612insG	p.A204fs	CCTTTGGCCCCCG	.	206	12	78	0	.	228	C	77808831	-	C	77808830	7	5	11	1	0	1	1	0	0	0	0	0	2720	1203	42	0	1075	0	CBX4	17	77808830	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	3804964	77808830	3386380	251	1351											
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu	37	17	79226065	79226066	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SLC38A10	NM_001037984	exon13	c.1875_1876insA	p.K625fs	CTTGGCCTTTTCC	.	132	12	114	0	.	70	T	79226066	-	T	79226065	7	5	11	1	0	1	1	0	0	0	0	0	14602	680	24	0	1778	0	SLC38A10	17	79226065	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	1417235	79226065	1969145	252	1352											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu	37	18	9255075	9255076	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ANKRD12	NM_015208	exon9	c.1810_1811insA	p.E604fs	CATAAGGAAAAAA	.	198	14	280	0	.	92	A	9255076	-	A	9255075	7	5	11	1	0	1	1	0	0	0	0	0	640	1175	41	0	1840	0	ANKRD12	18	9255075	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10		9255075	68822173	253	1353											
MC5R	4161	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13826422	13826422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	MC5R	NM_005913	exon1	c.G658A	p.A220T	CGGATCGCGGCTC	.	138	42	214	1	.	526	A	13826422	G	A	13826422	3	1	11	1	0	0	0	0	1	0	0	0	9367	1087	38	1	660	1	MC5R	18	13826422	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	4571347	13826422	64250826	254	1354											
ESCO1	114799	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	19112484	19112484	+	Silent	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ESCO1	NM_052911	exon11	c.C2325T	p.F775F	CATGCTGAATACC	.	229	155	285	0	.	90	A	19112484	G	A	19112484	2	1	11	1	0	0	0	0	0	0	0	1	5248	1281	45	3		3	ESCO1	18	19112484	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	5286062	19112484	58964764	255	1355											
LAMA3	3909	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21331052	21331052	+	Silent	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	LAMA3	NM_001127717	exon5	c.G855T	p.R285R	TCGGCGGGTGAGT	.	111	28	161	0	.	100	T	21331052	G	T	21331052	2	4	11	1	0	0	0	0	0	0	0	1	8607	1246	43	3		3	LAMA3	18	21331052	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	2218568	21331052	56746196	256	1356											
ZNF521	25925	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22804595	22804595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZNF521	NM_015461	exon4	c.G3287A	p.C1096Y	TTCACGCAGCCGG	.	104	75	135	0	.	275	T	22804595	C	T	22804595	3	4	11	1	0	0	0	0	1	0	0	0	17962	710	25	3	668	3	ZNF521	18	22804595	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1473543	22804595	55272653	257	1357											
RTTN	25914	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	67794863	67794864	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	.	.	.	.	p.R1086I	AACTTCCCTGTGG	.	71	55	93	0	.	.	AA	67794864	CC	AA	67794863	3	1	11	1	0	0	0	0	1	0	0	0	13737	622	22	3	3522	3	RTTN	18	67794863	Missense_Mutation	DNP	CC	TCGA-BC-A112-01A-11D-A12Z-10	44990268	67794863	10282385	258	1358											
DOT1L	84444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	2202716	2202716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	DOT1L	NM_032482	exon9	c.A725G	p.N242S	TGAATAATTTTGC	.	288	198	346	0	.	132	G	2202716	A	G	2202716	3	3	11	1	0	0	0	0	1	0	0	0	4709	101	4	2	759	2	DOT1L	19	2202716	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10		2202716	56926267	259	1359											
PIAS4	51588	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	4037690	4037690	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PIAS4	NM_015897	exon11	c.C1350T	p.G450G	TGGCGGCGGCCCG	.	68	37	33	0	.	659	T	4037690	C	T	4037690	2	4	11	1	0	0	0	0	0	0	0	1	11878	755	27	1		1	PIAS4	19	4037690	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1834974	4037690	55091293	260	1360											
SMARCA4	6597	bcgsc.ca;mdanderson.org	37	19	11098360	11098360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SMARCA4	NM_003072	exon6	c.C878T	p.A293V	ATGCTGCTGCCCC	.	186	58	212	1	.	1523	T	11098360	C	T	11098360	3	4	11	1	0	0	0	0	1	0	0	0	14770	797	28	3	896	3	SMARCA4	19	11098360	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	7060670	11098360	48030623	261	1361											
ZNF20	7568	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12243428	12243428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ZNF20	NM_021143	exon4	c.G1573C	p.E525Q	TTCTTTCATGTTC	.	192	64	145	0	.	22	G	12243428	C	G	12243428	3	3	11	1	0	0	0	0	1	0	0	0	17758	835	29	4	29	4	ZNF20	19	12243428	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1145068	12243428	46885555	262	1362											
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu	37	19	12911099	12911100	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PRDX2	NM_005809	exon4	c.272_273insC	p.I91fs	TCTTTCCGGGGGG	.	184	11	212	0	.	90	G	12911100	-	G	12911099	7	5	11	1	0	1	1	0	0	0	0	0	12465	652	23	0	336	0	PRDX2	19	12911099	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	667671	12911099	46217884	263	1363											
RNASEH2A	10535	broad.mit.edu;bcgsc.ca	37	19	12918138	12918139	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RNASEH2A	NM_006397	exon3	c.318_319insG	p.L106fs	CATGCTTGGGCGG	.	69	7	75	0	.	524	G	12918139	-	G	12918138	7	5	11	1	0	1	1	0	0	0	0	0	13412	1799	63	0	328	0	RNASEH2A	19	12918138	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	7039	12918138	46210845	264	1364											
CYP2A7	1549	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	41387943	41387943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CYP2A7	NM_000764	exon1	c.T173C	p.I58T	TTCATGATGGAGT	.	375	179	409	1	.	93	G	41387943	A	G	41387943	3	3	11	1	0	0	0	0	1	0	0	0	4163	333	12	2	1357	2	CYP2A7	19	41387943	Missense_Mutation	SNP	A	TCGA-BC-A112-01A-11D-A12Z-10	28469805	41387943	17741040	265	1365											
NAPA	8775	hgsc.bcm.edu;broad.mit.edu	37	19	47995348	47995349	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NAPA	NM_003827	exon8	c.590_591insC	p.L197fs	TTGAGGAGGGGGC	.	158	13	145	0	.	90	G	47995349	-	G	47995348	7	5	11	1	0	1	1	0	0	0	0	0	10161	304	11	0	313	0	NAPA	19	47995348	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	6607405	47995348	11133635	266	1366											
TPRX1	284355	hgsc.bcm.edu;broad.mit.edu	37	19	48305271	48305272	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TPRX1	NM_198479	exon2	c.997_998insC	p.L333fs	GCCATAAGGGGGC	.	160	11	122	0	.	90	G	48305272	-	G	48305271	7	5	11	1	0	1	1	0	0	0	0	0	16419	69	3	0	242	0	TPRX1	19	48305271	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	309923	48305271	10823712	267	1367											
PLEKHA4	57664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49364948	49364948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PLEKHA4	NM_001161354	exon4	c.A194G	p.D65G	GAGCTGTCCTGGG	.	77	29	68	0	.	227	C	49364948	T	C	49364948	3	2	11	1	0	0	0	0	1	0	0	0	12058	1681	58	2	2213	2	PLEKHA4	19	49364948	Missense_Mutation	SNP	T	TCGA-BC-A112-01A-11D-A12Z-10	1059677	49364948	9764035	268	1368											
ACPT	93650	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51298214	51298214	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	ACPT	NM_033068	exon10	c.C1158T	p.I386I	TGCCATCCCCCCA	.	163	18	178	0	.	90	T	51298214	C	T	51298214	2	4	11	1	0	0	0	0	0	0	0	1	168	845	30	3		3	ACPT	19	51298214	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	1933266	51298214	7830769	269	1369											
NLRP2	55655	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55508705	55508705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	NLRP2	NM_017852	exon12	c.C2900G	p.P967R	CCATCCCTCCGTT	.	319	96	313	0	.	120	G	55508705	C	G	55508705	3	3	11	1	0	0	0	0	1	0	0	0	10477	681	24	4	2942	4	NLRP2	19	55508705	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	4210491	55508705	3620278	270	1370											
GP6	51206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55539031	55539040	+	Frame_Shift_Del	DEL	GCTGTGGGCG	GCTGTGGGCG	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	GCTGTGGGCG	GCTGTGGGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	GP6	NM_016363	exon4	c.516_525del	p.172_175del	GGTTCCGCTGTGG	.	82	11	109	0	.	92	-	55539040	GCTGTGGGCG	-	55539031	7	5	11	1	0	1	0	1	0	0	0	0	6584	1078	38	0	1357	0	GP6	19	55539031	Frame_Shift_Del	DEL	GCTGTGGGCG	TCGA-BC-A112-01A-11D-A12Z-10	30326	55539031	3589952	271	1371											
PRNP	5621	broad.mit.edu;bcgsc.ca	37	20	4680180	4680181	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PRNP	NM_001080121	exon2	c.314_315insA	p.P105fs	GTAAGCCAAAAAC	.	68	7	84	0	.	514	A	4680181	-	A	4680180	7	5	11	1	0	1	1	0	0	0	0	0	12544	594	21	0	316	0	PRNP	20	4680180	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10		4680180	58345340	272	1372											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu	37	20	36869926	36869927	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	KIAA1755	NM_001029864	exon3	c.607_608insG	p.P203fs	GAAGGGGCCCCCA	.	181	11	198	0	.	95	C	36869927	-	C	36869926	7	5	11	1	0	1	1	0	0	0	0	0	8257	1203	42	0	3043	0	KIAA1755	20	36869926	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	32189746	36869926	26155594	273	1373											
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39794969	39794969	+	Silent	SNP	C	C	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PLCG1	NM_182811	exon17	c.C1935T	p.R645R	CCTGCGCTGTAAT	.	95	18	119	0	.	911	T	39794969	C	T	39794969	2	4	11	1	0	0	0	0	0	0	0	1	12035	784	28	3		3	PLCG1	20	39794969	Silent	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	2925043	39794969	23230551	274	1374											
PTK6	5753	ucsc.edu;mdanderson.org	37	20	62162199	62162199	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PTK6	NM_005975	exon6	c.C914A	p.S305X	TTCTGCGACTCCA	.	236	39	219	1	.	419	T	62162199	G	T	62162199	4	4	11	1	0	0	0	0	0	1	0	0	12764	1059	37	1	453	1	PTK6	20	62162199	Nonsense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	22367230	62162199	863321	275	1375											
RTEL1	51750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62326478	62326478	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	RTEL1	NM_032957	exon33	c.C3475G	p.L1159V	ACAGACCTGACCG	.	44	6	43	0	.	44	G	62326478	C	G	62326478	3	3	11	1	0	0	0	0	1	0	0	0	13720	680	24	4	3529	4	RTEL1	20	62326478	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	164279	62326478	699042	276	1376											
UMODL1	89766	broad.mit.edu;mdanderson.org	37	21	43529800	43529800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	UMODL1	NM_173568	exon10	c.G1648A	p.A550T	GGCCGGGCCTGTG	.	17	7	15	0	.	93	A	43529800	G	A	43529800	3	1	11	1	0	0	0	0	1	0	0	0	16977	1203	42	3	1686	3	UMODL1	21	43529800	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		43529800	4600095	277	1377											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu	37	21	47819683	47819684	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	PCNT	NM_006031	exon25	c.4764_4765insA	p.Q1588fs	AAAACAGAAAAAC	.	207	13	237	0	.	141	A	47819684	-	A	47819683	7	5	11	1	0	1	1	0	0	0	0	0	11590	933	33	0	4862	0	PCNT	21	47819683	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	4289883	47819683	310212	278	1378											
AP1B1	162	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29736737	29736737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	AP1B1	NM_001127	exon14	c.G1906C	p.D636H	CGAGGTCCAGGTT	.	97	11	92	0	.	92	G	29736737	C	G	29736737	3	3	11	1	0	0	0	0	1	0	0	0	731	855	30	4	983	4	AP1B1	22	29736737	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10		29736737	21567829	279	1379											
SSTR3	6753	hgsc.bcm.edu;bcgsc.ca	37	22	37602710	37602710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	SSTR3	NM_001051	exon2	c.C1133T	p.T378M	GGCTGCGTGATCT	.	82	5	104	0	.	522	A	37602710	G	A	37602710	3	1	11	1	0	0	0	0	1	0	0	0	15198	1145	40	1	127	1	SSTR3	22	37602710	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	7865973	37602710	13701856	280	1380											
TRIOBP	11078	broad.mit.edu;bcgsc.ca	37	22	38130525	38130526	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	TRIOBP	NM_001039141	exon9	c.4182_4183insC	p.L1394fs	CCCGCTGCCCCCC	.	99	10	85	0	.	136	C	38130526	-	C	38130525	7	5	11	1	0	1	1	0	0	0	0	0	16550	1306	46	0	4208	0	TRIOBP	22	38130525	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	527815	38130525	13174041	281	1381											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu	37	22	46930690	46930691	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	CELSR1	NM_014246	exon1	c.2378_2379insC	p.H793fs	GTGTAATGGGAGC	.	167	10	139	0	.	525	G	46930691	-	G	46930690	7	5	11	1	0	1	1	0	0	0	0	0	3221	1464	51	0	6806	0	CELSR1	22	46930690	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	8800165	46930690	4373876	282	1382											
VCX	26609	hgsc.bcm.edu;bcgsc.ca	37	X	7811709	7811709	+	Silent	SNP	G	G	C	rs139507263	byfrequency;alternate_allele	TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	VCX	NM_013452	exon3	c.G273C	p.P91P	GCCGCCGGAGGAG	.	84	28	81	0	G|0.999;A|0.001	22	C	7811709	G	C	7811709	2	2	11	1	0	0	0	0	0	0	0	1	17139	1103	39	4		4	VCX	23	7811709	Silent	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10		7811709	147458851	283	1383											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu	37	X	83128980	83128981	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	CYLC1,NS,malignant_melanoma,0	CYLC1	NM_021118	exon4	c.1264_1265insA	p.E422fs	AAAGATGAAAAAA	.	149	10	136	0	.	112	A	83128981	-	A	83128980	7	5	11	1	0	1	1	0	0	0	0	0	4141	1291	45	0	1278	0	CYLC1	23	83128980	Frame_Shift_Ins	INS	-	TCGA-BC-A112-01A-11D-A12Z-10	75317271	83128980	72141580	284	1384											
GLA	2717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100655664	100655678	+	In_Frame_Del	DEL	GGCCACATATAAAGA	GGCCACATATAAAGA	-	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	GGCCACATATAAAGA	GGCCACATATAAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	GLA	NM_000169	exon4	c.615_629del	p.205_210del	TGAAAGGGCCACA	.	111	11	115	0	.	130	-	100655678	GGCCACATATAAAGA	-	100655664	7	5	11	1	0	1	0	1	0	0	0	0	6426	1232	43	0	676	0	GLA	23	100655664	In_Frame_Del	DEL	GGCCACATATAAAGA	TCGA-BC-A112-01A-11D-A12Z-10	17526684	100655664	54614896	285	1385											
WDR44	54521	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117528110	117528110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	WDR44	NM_001184965	exon5	c.G919T	p.A307S	GATTTGGCAAGTG	.	148	105	190	0	.	133	T	117528110	G	T	117528110	3	4	11	1	0	0	0	0	1	0	0	0	17293	1203	42	3	937	3	WDR44	23	117528110	Missense_Mutation	SNP	G	TCGA-BC-A112-01A-11D-A12Z-10	16872446	117528110	37742450	286	1386											
F8	2157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154158684	154158684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A112-01A-11D-A12Z-10	TCGA-BC-A112-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3d19f75-db62-42cc-8a6f-7685ab1f3b9b	bb1973b9-7ab8-4bbc-beb1-9448f91ad7ef	.	F8	NM_000132	exon14	c.G3381C	p.W1127C	TTGTATCCACCTT	.	165	28	149	0	.	182	G	154158684	C	G	154158684	3	3	11	1	0	0	0	0	1	0	0	0	5350	856	30	4	3754	4	F8	23	154158684	Missense_Mutation	SNP	C	TCGA-BC-A112-01A-11D-A12Z-10	36630574	154158684	1111876	287	1387											
NBPF3	84224	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	21808194	21808194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NBPF3	NM_032264	exon13	c.G1538C	p.R513T	ATTCATGCCAGCC	.	385	84	502	0	.	92	C	21808194	G	C	21808194	3	2	12	1	0	0	0	0	1	0	0	0	10197	1319	46	4	1584	4	NBPF3	1	21808194	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10		21808194	227442427	1	1388											
SERINC2	347735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31907019	31907019	+	Silent	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SERINC2	NM_001199038	exon11	c.C1368A	p.L456L	CCCACTCCTCCTG	.	35	30	54	0	.	90	A	31907019	C	A	31907019	2	1	12	1	0	0	0	0	0	0	0	1	14080	842	30	3		3	SERINC2	1	31907019	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	10098825	31907019	217343602	2	1389											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79403615	79403615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ELTD1	NM_022159	exon6	c.T637A	p.L213I	CAGATAACTTGTC	.	371	114	296	0	.	24	T	79403615	A	T	79403615	3	4	12	1	0	0	0	0	1	0	0	0	5084	40	2	4	1475	4	ELTD1	1	79403615	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	47496596	79403615	169847006	3	1390											
ITGA10	8515	hgsc.bcm.edu;mdanderson.org	37	1	145532146	145532146	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ITGA10	NM_003637	exon8	c.C790T	p.R264X	GGGGGCCGACCCG	.	62	14	51	0	.	231	T	145532146	C	T	145532146	4	4	12	1	0	0	0	0	0	1	0	0	7873	644	23	1	820	1	ITGA10	1	145532146	Nonsense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	66128531	145532146	103718475	4	1391											
RNASEL	6041	hgsc.bcm.edu;broad.mit.edu	37	1	182551358	182551360	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RNASEL	NM_021133	exon4	c.1600_1602del	p.534_534del	GCTTCCCTTCTTT	.	223	15	144	0	.	336	-	182551360	CTT	-	182551358	7	5	12	1	0	1	0	1	0	0	0	0	13416	680	24	0	639	0	RNASEL	1	182551358	In_Frame_Del	DEL	CTT	TCGA-BC-A216-01A-11D-A152-10	37019212	182551358	66699263	5	1392											
CFH	3075	broad.mit.edu;bcgsc.ca	37	1	196716375	196716375	+	Missense_Mutation	SNP	C	C	T	rs121913059	bycluster	TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CFH	NM_000186	exon22	c.C3628T	p.R1210C	TCATCACGTTCTC	.	1208	52	816	1	C|1.000;T|0.000	566	T	196716375	C	T	196716375	3	4	12	1	0	0	0	0	1	0	0	0	3283	536	19	1	3732	1	CFH	1	196716375	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	14165017	196716375	52534246	6	1393											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	224002032	224002032	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TP53BP2	NM_001031685	exon3	c.C199T	p.R67X	ACATTCGCTCATT	.	60	9	30	0	.	229	A	224002032	G	A	224002032	4	1	12	1	0	0	0	0	0	1	0	0	16381	1095	38	1	3269	1	TP53BP2	1	224002032	Nonsense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	27285657	224002032	25248589	7	1394											
KIDINS220	57498	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	8871250	8871250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	KIDINS220	NM_020738	exon30	c.T4916C	p.I1639T	GCTATAATTGGAT	.	98	48	146	2	.	93	G	8871250	A	G	8871250	3	3	12	1	0	0	0	0	1	0	0	0	8271	101	4	2	403	2	KIDINS220	2	8871250	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		8871250	234328123	8	1395											
DTNB	1838	bcgsc.ca;mdanderson.org	37	2	25611083	25611083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	DTNB	NM_021907	exon17	c.G1723A	p.A575T	CGAAGGCCTCCTG	.	22	12	33	1	.	137	T	25611083	C	T	25611083	3	4	12	1	0	0	0	0	1	0	0	0	4789	739	26	3	176	3	DTNB	2	25611083	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	16739833	25611083	217588290	9	1396											
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu	37	2	85536399	85536400	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TCF7L1	NM_031283	exon12	c.1581_1582insGCA	p.A527delinsAA	TAAGGCTGCAGCC	.	66	19	71	0	.	585	GCA	85536400	-	GCA	85536399	7	5	12	1	0	1	1	0	0	0	0	0	15694	1567	55	0	1627	0	TCF7L1	2	85536399	In_Frame_Ins	INS	-	TCGA-BC-A216-01A-11D-A152-10	59925316	85536399	157662974	10	1397											
TGOLN2	10618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85552051	85552051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TGOLN2	NM_001206841	exon3	c.G1295A	p.R432H	TCCAAACGTTGGT	.	114	35	99	0	.	22	T	85552051	C	T	85552051	3	4	12	1	0	0	0	0	1	0	0	0	15833	536	19	1	26	1	TGOLN2	2	85552051	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	15652	85552051	157647322	11	1398											
SLC5A7	60482	bcgsc.ca;mdanderson.org	37	2	108627264	108627264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC5A7	NM_021815	exon9	c.C1690A	p.L564I	GCCTTCCTTGATG	.	16	3	29	0	.	93	A	108627264	C	A	108627264	3	1	12	1	0	0	0	0	1	0	0	0	14670	681	24	3	1720	3	SLC5A7	2	108627264	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	23075213	108627264	134572109	12	1399											
CDCA7	83879	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174224139	174224139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CDCA7	NM_031942	exon3	c.G304A	p.E102K	ACTAACGAACTGG	.	210	64	177	1	.	91	A	174224139	G	A	174224139	3	1	12	1	0	0	0	0	1	0	0	0	3090	1059	37	1	314	1	CDCA7	2	174224139	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	65596875	174224139	68975234	13	1400											
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238255185	238255185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	COL6A3	NM_004369	exon32	c.A7053G	p.I2351M	TCCAACTATCCCT	.	47	4	83	0	.	526	C	238255185	T	C	238255185	3	2	12	1	0	0	0	0	1	0	0	0	3701	1512	53	2	2532	2	COL6A3	2	238255185	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	64031046	238255185	4944188	14	1401											
ASB1	51665	ucsc.edu;bcgsc.ca	37	2	239353034	239353034	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ASB1	NM_001040445	exon4	c.T546C	p.P182P	CCAGCCTCGATTC	.	36	4	63	0	.	226	C	239353034	T	C	239353034	2	2	12	1	0	0	0	0	0	0	0	1	1013	1538	54	2		2	ASB1	2	239353034	Silent	SNP	T	TCGA-BC-A216-01A-11D-A152-10	1097849	239353034	3846339	15	1402											
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57154328	57154328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IL17RD	NM_017563	exon2	c.C140T	p.A47V	CTGCTGGCTGGCC	.	95	31	85	0	.	500	A	57154328	G	A	57154328	3	1	12	1	0	0	0	0	1	0	0	0	7642	1203	42	3	2127	3	IL17RD	3	57154328	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10		57154328	140868102	16	1403											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121158902	121158903	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	POLQ	NM_199420	exon27	c.7325_7326del	p.2442_2442del	CAAAATGGTCTGA	.	61	23	65	0	.	664	-	121158903	GG	-	121158902	7	5	12	1	0	1	0	1	0	0	0	0	12208	1335	47	0	462	0	POLQ	3	121158902	Frame_Shift_Del	DEL	GG	TCGA-BC-A216-01A-11D-A152-10	64004574	121158902	76863528	17	1404											
SEMA5B	54437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122662337	122662337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SEMA5B	NM_001256347	exon4	c.A536T	p.D179V	GAGAAATCCCGGG	.	26	14	46	0	.	157	A	122662337	T	A	122662337	3	1	12	1	0	0	0	0	1	0	0	0	14038	1435	50	4	3161	4	SEMA5B	3	122662337	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	1503435	122662337	75360093	18	1405											
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132349391	132349391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ACAD11	NM_032169	exon7	c.A853T	p.M285L	CTTCCATTGATGG	.	125	22	132	0	.	91	A	132349391	T	A	132349391	3	1	12	1	0	0	0	0	1	0	0	0	109	1493	52	4	1545	4	ACAD11	3	132349391	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	9687054	132349391	65673039	19	1406											
TOPBP1	11073	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133339026	133339026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TOPBP1	NM_007027	exon20	c.G3344T	p.G1115V	CTTCGTCCACTGC	.	71	28	105	1	.	540	A	133339026	C	A	133339026	3	1	12	1	0	0	0	0	1	0	0	0	16366	855	30	3	1260	3	TOPBP1	3	133339026	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	989635	133339026	64683404	20	1407											
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179103488	179103488	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MFN1	NM_033540	exon15	c.C1794T	p.G598G	TATGGGCATCATT	.	132	46	113	1	.	155	T	179103488	C	T	179103488	2	4	12	1	0	0	0	0	0	0	0	1	9523	697	25	3		3	MFN1	3	179103488	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	45764462	179103488	18918942	21	1408											
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184911175	184911175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	EHHADH	NM_001966	exon7	c.C1011A	p.N337K	CATCTTGTTTGCA	.	108	33	166	0	.	93	T	184911175	G	T	184911175	3	4	12	1	0	0	0	0	1	0	0	0	4982	1368	48	3	1164	3	EHHADH	3	184911175	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	5807687	184911175	13111255	22	1409											
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	186917604	186917604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RTP1	NM_153708	exon2	c.C538T	p.R180C	GCCAGCCGCCAGG	.	32	18	29	0	.	155	T	186917604	C	T	186917604	3	4	12	1	0	0	0	0	1	0	0	0	13733	652	23	1	544	1	RTP1	3	186917604	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	2006429	186917604	11104826	23	1410											
CCDC96	257236	ucsc.edu;bcgsc.ca	37	4	7043800	7043800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CCDC96	NM_153376	exon1	c.G866A	p.G289D	AGCATGCCCAGAT	.	48	4	62	0	.	90	T	7043800	C	T	7043800	3	4	12	1	0	0	0	0	1	0	0	0	2874	739	26	3	805	3	CCDC96	4	7043800	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10		7043800	184110476	24	1411											
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88732600	88732600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IBSP	NM_004967	exon7	c.A492T	p.E164D	CGAAGAAAGCGAA	.	151	53	197	0	.	90	T	88732600	A	T	88732600	3	4	12	1	0	0	0	0	1	0	0	0	7475	11	1	4	514	4	IBSP	4	88732600	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	81688800	88732600	102421676	25	1412											
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455191	187455191	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MTNR1A	NM_005958	exon2	c.G705A	p.R235R	AAAATTCCTGAAG	.	192	47	162	0	.	524	T	187455191	C	T	187455191	2	4	12	1	0	0	0	0	0	0	0	1	9951	854	30	3		3	MTNR1A	4	187455191	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	98722591	187455191	3699085	26	1413											
MAP1B	4131	ucsc.edu;bcgsc.ca	37	5	71499617	71499617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MAP1B	NM_005909	exon6	c.A7240G	p.S2414G	TGGGGCAGCAACA	.	44	4	68	0	.	155	G	71499617	A	G	71499617	3	3	12	1	0	0	0	0	1	0	0	0	9228	188	7	2	7262	2	MAP1B	5	71499617	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		71499617	109415643	27	1414											
RASGRF2	5924	ucsc.edu;bcgsc.ca	37	5	80503111	80503111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RASGRF2	NM_006909	exon21	c.A3014G	p.E1005G	CCATGGAGCTGGC	.	52	4	56	0	.	725	G	80503111	A	G	80503111	3	3	12	1	0	0	0	0	1	0	0	0	13073	304	11	2	3096	2	RASGRF2	5	80503111	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	9003494	80503111	100412149	28	1415											
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7583427	7583427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	DSP	NM_004415	exon24	c.A5932G	p.M1978V	ACAGCAATGCAGC	.	126	56	132	1	.	518	G	7583427	A	G	7583427	3	3	12	1	0	0	0	0	1	0	0	0	4781	101	4	2	6026	2	DSP	6	7583427	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		7583427	163531640	29	1416											
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27101166	27101166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	HIST1H2AG	NM_021064	exon1	c.G316T	p.G106C	GCACAGGGCGGTG	.	134	53	186	0	.	68	T	27101166	G	T	27101166	3	4	12	1	0	0	0	0	1	0	0	0	7133	1232	43	3	318	3	HIST1H2AG	6	27101166	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	19517739	27101166	144013901	30	1417											
HMGCLL1	54511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55360266	55360266	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	HMGCLL1	NM_019036	exon8	c.G836C	p.C279S	TCATGACAGTGAA	.	160	64	203	0	.	94	G	55360266	C	G	55360266	3	3	12	1	0	0	0	0	1	0	0	0	7230	478	17	4	288	4	HMGCLL1	6	55360266	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	28259100	55360266	115754801	31	1418											
MED23	9439	ucsc.edu;bcgsc.ca	37	6	131946047	131946047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MED23	NM_015979	exon4	c.A242G	p.D81G	AAGCAGTCATAAA	.	48	4	55	0	.	24	C	131946047	T	C	131946047	3	2	12	1	0	0	0	0	1	0	0	0	9441	1667	58	2	3997	2	MED23	6	131946047	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	76585781	131946047	39169020	32	1419											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152651593	152651593	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SYNE1	NM_182961	exon78	c.A14227C	p.T4743P	GACCTGTGCTGCG	.	49	25	69	0	.	607	G	152651593	T	G	152651593	3	3	12	1	0	0	0	0	1	0	0	0	15442	1696	59	5	12515	5	SYNE1	6	152651593	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	20705546	152651593	18463474	33	1420											
TWISTNB	221830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	19738145	19738145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TWISTNB	NM_001002926	exon4	c.T811C	p.W271R	CCTCCCAGATGCC	.	158	59	192	0	.	91	G	19738145	A	G	19738145	3	3	12	1	0	0	0	0	1	0	0	0	16781	188	7	2	209	2	TWISTNB	7	19738145	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		19738145	139400518	34	1421											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70252291	70252291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	AUTS2	NM_015570	exon18	c.C2405T	p.S802L	CTCCGTCGTTCCC	.	73	31	81	0	.	92	T	70252291	C	T	70252291	3	4	12	1	0	0	0	0	1	0	0	0	1225	893	31	1	2620	1	AUTS2	7	70252291	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	50514146	70252291	88886372	35	1422											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48856412	48856412	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PRKDC	NM_001081640	exon10	c.808+1G>T	.	ATCCTACCTGAGG	.	129	57	166	2	.	1515	A	48856412	C	A	48856412	5	1	12	1	0	0	0	0	0	0	1	0	12521	521	18	3	11888	3	PRKDC	8	48856412	Splice_Site	SNP	C	TCGA-BC-A216-01A-11D-A152-10		48856412	97507610	36	1423											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113421218	113421218	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CSMD3	NM_198123	exon33	c.T5439A	p.D1813E	AACAACATCGTGG	.	134	58	160	0	.	1132	T	113421218	A	T	113421218	3	4	12	1	0	0	0	0	1	0	0	0	3946	214	8	4	5840	4	CSMD3	8	113421218	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	64564806	113421218	32942804	37	1424											
AKR1C3	8644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5144299	5144299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	AKR1C3	NM_003739	exon6	c.T577C	p.C193R	GTAGAATGTCATC	.	155	60	206	1	.	515	C	5144299	T	C	5144299	3	2	12	1	0	0	0	0	1	0	0	0	471	1464	51	2	599	2	AKR1C3	10	5144299	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10		5144299	130390448	38	1425											
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	27826828	27826828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RAB18	NM_001256410	exon8	c.G556A	p.G186S	TGTGATGGTGTAC	.	81	31	96	0	.	227	A	27826828	G	A	27826828	3	1	12	1	0	0	0	0	1	0	0	0	12903	1348	47	3	495	3	RAB18	10	27826828	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	22682529	27826828	107707919	39	1426											
SYT15	83849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	46968625	46968625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SYT15	NM_031912	exon3	c.G311T	p.C104F	GCCGGGCAGGGGT	.	27	5	22	0	.	22	A	46968625	C	A	46968625	3	1	12	1	0	0	0	0	1	0	0	0	15468	710	25	3	1032	3	SYT15	10	46968625	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	19141797	46968625	88566122	40	1427											
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127426555	127426555	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	C10orf137	NM_001202438	exon14	c.A1827G	p.L609L	TGTTCTAGAGGTA	.	246	87	284	0	.	590	G	127426555	A	G	127426555	2	3	12	1	0	0	0	0	0	0	0	1	1594	407	15	2		2	C10orf137	10	127426555	Silent	SNP	A	TCGA-BC-A216-01A-11D-A152-10	80457930	127426555	8108192	41	1428											
E2F8	79733	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	19251120	19251120	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	E2F8	NM_024680	exon10	c.A1774T	p.K592X	GGCTCTTTGCCCC	.	141	63	190	1	.	91	A	19251120	T	A	19251120	4	1	12	1	0	0	0	0	0	1	0	0	4873	1850	64	4	845	4	E2F8	11	19251120	Nonsense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10		19251120	115755396	42	1429											
QSER1	79832	broad.mit.edu;bcgsc.ca	37	11	32987853	32987853	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	QSER1	NM_001076786	exon9	c.A4590G	p.E1530E	ATTTGAACCTCCC	.	95	7	111	2	.	95	G	32987853	A	G	32987853	2	3	12	1	0	0	0	0	0	0	0	1	12882	40	2	2		2	QSER1	11	32987853	Silent	SNP	A	TCGA-BC-A216-01A-11D-A152-10	13736733	32987853	102018663	43	1430											
PC	5091	ucsc.edu;bcgsc.ca	37	11	66633672	66633672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PC	NM_000920	exon10	c.A1171G	p.T391A	GGCCGGTGTCCGG	.	36	5	42	1	.	228	C	66633672	T	C	66633672	3	2	12	1	0	0	0	0	1	0	0	0	11497	1696	59	2	2417	2	PC	11	66633672	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	33645819	66633672	68372844	44	1431											
VPS26B	112936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134113163	134113163	+	Silent	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	VPS26B	NM_052875	exon4	c.G696A	p.E232E	GTACGAGATCATG	.	52	21	87	1	.	90	A	134113163	G	A	134113163	2	1	12	1	0	0	0	0	0	0	0	1	17195	933	33	3		3	VPS26B	11	134113163	Silent	SNP	G	TCGA-BC-A216-01A-11D-A152-10	67479491	134113163	893353	45	1432											
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13716219	13716219	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GRIN2B	NM_000834	exon13	c.C3953G	p.A1318G	CGCGGGGCCAGGG	.	186	93	184	0	.	231	C	13716219	G	C	13716219	3	2	12	1	0	0	0	0	1	0	0	0	6780	1203	42	4	505	4	GRIN2B	12	13716219	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10		13716219	120135676	46	1433											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41410483	41410483	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CNTN1	NM_001843	exon19	c.2185-1G>A	.	TATTTAGCCTTTG	.	125	57	126	0	.	1149	A	41410483	G	A	41410483	5	1	12	1	0	0	0	0	0	0	1	0	3640	985	34	3	2254	3	CNTN1	12	41410483	Splice_Site	SNP	G	TCGA-BC-A216-01A-11D-A152-10	27694264	41410483	92441412	47	1434											
MIP	4284	ucsc.edu;bcgsc.ca	37	12	56845248	56845248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MIP	NM_012064	exon4	c.T608C	p.V203A	CAGTACACCTGTA	.	44	4	80	0	.	91	G	56845248	A	G	56845248	3	3	12	1	0	0	0	0	1	0	0	0	9591	173	6	2	187	2	MIP	12	56845248	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	15434765	56845248	77006647	48	1435											
RBMS2	5939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56975266	56975266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RBMS2	NM_002898	exon7	c.C706T	p.R236W	AATGGACGGGCTT	.	45	21	39	0	.	90	T	56975266	C	T	56975266	3	4	12	1	0	0	0	0	1	0	0	0	13149	527	19	1	732	1	RBMS2	12	56975266	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	130018	56975266	76876629	49	1436											
USP15	9958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	62775287	62775287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	USP15	NM_001252078	exon9	c.C932T	p.P311L	ACACACCTCCACT	.	71	31	79	0	.	1084	T	62775287	C	T	62775287	3	4	12	1	0	0	0	0	1	0	0	0	17043	681	24	3	875	3	USP15	12	62775287	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	5800021	62775287	71076608	50	1437											
GLT8D2	83468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104396997	104396997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GLT8D2	NM_031302	exon5	c.C200T	p.A67V	ATGGCAGCCATAG	.	145	56	154	1	.	92	A	104396997	G	A	104396997	3	1	12	1	0	0	0	0	1	0	0	0	6470	971	34	3	877	3	GLT8D2	12	104396997	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	41621710	104396997	29454898	51	1438											
SLC24A6	80024	ucsc.edu;bcgsc.ca	37	12	113758428	113758428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC24A6	NM_024959	exon6	c.T484C	p.S162P	GGTCAGAGAAGGC	.	44	4	38	0	.	90	G	113758428	A	G	113758428	3	3	12	1	0	0	0	0	1	0	0	0	14470	304	11	2	1314	2	SLC24A6	12	113758428	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	9361431	113758428	20093467	52	1439											
PEBP1	5037	ucsc.edu;bcgsc.ca	37	12	118575893	118575893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PEBP1	NM_002567	exon2	c.A185G	p.K62R	CAGGGAAGCTCTA	.	31	4	50	0	.	779	G	118575893	A	G	118575893	3	3	12	1	0	0	0	0	1	0	0	0	11713	72	3	2	191	2	PEBP1	12	118575893	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	4817465	118575893	15276002	53	1440											
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130834407	130834407	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PIWIL1	NM_004764	exon9	c.C939T	p.N313N	GTATAACAATAAG	.	66	33	101	0	.	92	T	130834407	C	T	130834407	2	4	12	1	0	0	0	0	0	0	0	1	11957	477	17	3		3	PIWIL1	12	130834407	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	12258514	130834407	3017488	54	1441											
GPR12	2835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	27332981	27332981	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GPR12	NM_005288	exon2	c.G984A	p.A328A	CGAGCGCGCTCTC	.	86	30	107	0	.	90	T	27332981	C	T	27332981	2	4	12	1	0	0	0	0	0	0	0	1	6635	755	27	1		1	GPR12	13	27332981	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10		27332981	87836897	55	1442											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31597908	31597908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	HECTD1	NM_015382	exon25	c.C4669T	p.R1557W	TAGTCCGTGCTAT	.	234	97	276	1	.	570	A	31597908	G	A	31597908	3	1	12	1	0	0	0	0	1	0	0	0	7039	1144	40	1	3239	1	HECTD1	14	31597908	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10		31597908	75751632	56	1443											
RTN1	6252	broad.mit.edu;bcgsc.ca	37	14	60194386	60194386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RTN1	NM_021136	exon3	c.A1016G	p.E339G	GATGGTTCTGTCG	.	74	6	68	0	.	516	C	60194386	T	C	60194386	3	2	12	1	0	0	0	0	1	0	0	0	13725	1797	62	2	1407	2	RTN1	14	60194386	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	28596478	60194386	47155154	57	1444											
SLC8A3	6547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70633754	70633754	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC8A3	NM_183002	exon2	c.G1386A	p.K462K	GAACTCCTTCTGG	.	18	7	32	0	.	225	T	70633754	C	T	70633754	2	4	12	1	0	0	0	0	0	0	0	1	14708	680	24	3		3	SLC8A3	14	70633754	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	10439368	70633754	36715786	58	1445											
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59450529	59450529	+	Silent	SNP	A	A	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MYO1E	NM_004998	exon25	c.T2835G	p.T945T	ATTTTGAGTCCCA	.	165	81	209	0	.	514	C	59450529	A	C	59450529	2	2	12	1	0	0	0	0	0	0	0	1	10072	291	11	5		5	MYO1E	15	59450529	Silent	SNP	A	TCGA-BC-A216-01A-11D-A152-10		59450529	43080863	59	1446											
GCNT3	9245	ucsc.edu;bcgsc.ca	37	15	59911038	59911038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GCNT3	NM_004751	exon3	c.T601C	p.S201P	TCCTGGTCCAGGG	.	48	4	50	0	.	91	C	59911038	T	C	59911038	3	2	12	1	0	0	0	0	1	0	0	0	6302	1667	58	2	603	2	GCNT3	15	59911038	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	460509	59911038	42620354	60	1447											
NMB	4828	ucsc.edu;bcgsc.ca	37	15	85198626	85198626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NMB	NM_205858	exon3	c.G340T	p.G114C	TTGTACCAGCAGC	.	43	4	100	1	.	90	A	85198626	C	A	85198626	3	1	12	1	0	0	0	0	1	0	0	0	10486	594	21	3	128	3	NMB	15	85198626	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	25287588	85198626	17332766	61	1448											
PGPEP1L	145814	ucsc.edu;bcgsc.ca	37	15	99512659	99512659	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	.	NM_001102612	exon4	c.A366G	p.A122A	CCTGCCTGCATCT	.	26	4	59	0	.	.	C	99512659	T	C	99512659	2	2	12	1	0	0	0	0	0	0	0	1	11804	1567	55	2		2	PGPEP1L	15	99512659	Silent	SNP	T	TCGA-BC-A216-01A-11D-A152-10	14314033	99512659	3018733	62	1449											
SLC6A2	6530	ucsc.edu;bcgsc.ca	37	16	55731912	55731912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC6A2	NM_001172501	exon10	c.T1364C	p.L455P	CTTTCCTTCTCGC	.	44	4	78	0	.	526	C	55731912	T	C	55731912	3	2	12	1	0	0	0	0	1	0	0	0	14683	1609	56	2	1489	2	SLC6A2	16	55731912	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10		55731912	34622841	63	1450											
TPPP3	51673	ucsc.edu;bcgsc.ca	37	16	67424851	67424851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TPPP3	NM_016140	exon3	c.T164C	p.V55A	ATGTCCACATCGG	.	32	4	55	1	.	90	G	67424851	A	G	67424851	3	3	12	1	0	0	0	0	1	0	0	0	16412	159	6	2	378	2	TPPP3	16	67424851	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	11692939	67424851	22929902	64	1451											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651	bycluster	TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	TP53,head_neck,carcinoma,+1	TP53	NM_000546	exon7	c.C742T	p.R248W	GCCTCCGGTTCAT	.	46	31	114	1	.	70225	A	7577539	G	A	7577539	3	1	12	1	0	0	0	0	1	0	0	0	16378	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10		7577539	73617671	65	1452											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10404040	10404040	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MYH1	NM_005963	exon28	c.A3768G	p.L1256L	ATCTTCTAGAGCG	.	108	25	114	0	.	171	C	10404040	T	C	10404040	2	2	12	1	0	0	0	0	0	0	0	1	10029	1509	53	2		2	MYH1	17	10404040	Silent	SNP	T	TCGA-BC-A216-01A-11D-A152-10	2826501	10404040	70791170	66	1453											
KRTAP9-3	83900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39389083	39389083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	KRTAP9-3	NM_031962	exon1	c.T330A	p.S110R	CACAAGTGTTTGT	.	116	44	179	2	.	91	A	39389083	T	A	39389083	3	1	12	1	0	0	0	0	1	0	0	0	8574	1693	59	4	332	4	KRTAP9-3	17	39389083	Missense_Mutation	SNP	T	TCGA-BC-A216-01A-11D-A152-10	28985043	39389083	41806127	67	1454											
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	44051811	44051811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MAPT	NM_005910	exon4	c.A281G	p.H94R	AGCCCCACACGGA	.	38	19	43	0	.	91	G	44051811	A	G	44051811	3	3	12	1	0	0	0	0	1	0	0	0	9297	159	6	2	291	2	MAPT	17	44051811	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	4662728	44051811	37143399	68	1455											
IGF2BP1	10642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47117454	47117454	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IGF2BP1	NM_006546	exon7	c.818+1G>A	.	CAAAACGTAAGTC	.	61	24	85	0	.	226	A	47117454	G	A	47117454	5	1	12	1	0	0	0	0	0	0	1	0	7573	1159	40	1	845	1	IGF2BP1	17	47117454	Splice_Site	SNP	G	TCGA-BC-A216-01A-11D-A152-10	3065643	47117454	34077756	69	1456											
TMEM92	162461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48351885	48351885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TMEM92	NM_153229	exon1	c.G23A	p.G8D	TCCCCGGCCTCGC	.	34	10	22	0	.	90	A	48351885	G	A	48351885	3	1	12	1	0	0	0	0	1	0	0	0	16218	1203	42	3	25	3	TMEM92	17	48351885	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	1234431	48351885	32843325	70	1457											
CA4	762	ucsc.edu;bcgsc.ca	37	17	58235786	58235786	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CA4	NM_000717	exon7	c.C723T	p.P241P	GGAGCCCATTCAG	.	33	4	22	0	.	226	T	58235786	C	T	58235786	2	4	12	1	0	0	0	0	0	0	0	1	2518	581	21	3		3	CA4	17	58235786	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	9883901	58235786	22959424	71	1458											
ZNF490	57474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12721447	12721447	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF490	NM_020714	exon1	c.G48A	p.E16E	TTGCTCCTCGAGG	.	27	7	38	0	.	90	T	12721447	C	T	12721447	2	4	12	1	0	0	0	0	0	0	0	1	17938	680	24	3		3	ZNF490	19	12721447	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10		12721447	46407536	72	1459											
ZNF208	7757	hgsc.bcm.edu;bcgsc.ca	37	19	22171610	22171610	+	Silent	SNP	C	C	T	rs201303510		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF208	NM_007153	exon2	c.G105A	p.E35E	GTAGTTCTCTAAC	.	155	14	179	0	.	7	T	22171610	C	T	22171610	2	4	12	1	0	0	0	0	0	0	0	1	17763	912	32	3		3	ZNF208	19	22171610	Silent	SNP	C	TCGA-BC-A216-01A-11D-A152-10	9450163	22171610	36957373	73	1460											
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22364341	22364341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF676	NM_001001411	exon3	c.G178C	p.E60Q	AATCTTCTATGCC	.	115	54	122	0	.	90	G	22364341	C	G	22364341	3	3	12	1	0	0	0	0	1	0	0	0	18080	922	32	4	1592	4	ZNF676	19	22364341	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	192731	22364341	36764642	74	1461											
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36228046	36228046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MLL4	NM_014727	exon33	c.C7432A	p.Q2478K	GCCGAGCAGCTCC	.	28	9	47	0	.	697	A	36228046	C	A	36228046	3	1	12	1	0	0	0	0	1	0	0	0	9623	711	25	3	7562	3	MLL4	19	36228046	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	13863705	36228046	22900937	75	1462											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40360958	40360958	+	Silent	SNP	G	G	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	FCGBP	NM_003890	exon33	c.C15450A	p.R5150R	AAAACAGCGGGTG	.	47	19	69	0	.	98	T	40360958	G	T	40360958	2	4	12	1	0	0	0	0	0	0	0	1	5778	958	34	3		3	FCGBP	19	40360958	Silent	SNP	G	TCGA-BC-A216-01A-11D-A152-10	4132912	40360958	18768025	76	1463	11	2									
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40360959	40360959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	FCGBP	NM_003890	exon33	c.G15449A	p.R5150H	AAACAGCGGGTGG	.	47	18	68	0	.	98	T	40360959	C	T	40360959	3	4	12	1	0	0	0	0	1	0	0	0	5778	768	27	1	784	1	FCGBP	19	40360959	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	1	40360959	18768024	77	1464	11	2									
CCDC155	147872	ucsc.edu;bcgsc.ca	37	19	49901246	49901246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CCDC155	NM_144688	exon7	c.A475G	p.T159A	CAAGCCACAGCTG	.	56	5	50	0	.	69	G	49901246	A	G	49901246	3	3	12	1	0	0	0	0	1	0	0	0	2788	159	6	2	497	2	CCDC155	19	49901246	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	9540287	49901246	9227737	78	1465											
KLK12	43849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	51535232	51535232	+	Silent	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	KLK12	NM_019598	exon4	c.C357T	p.R119R	GGTTACGCGGACG	.	32	15	15	0	.	227	A	51535232	G	A	51535232	2	1	12	1	0	0	0	0	0	0	0	1	8400	1074	38	1		1	KLK12	19	51535232	Silent	SNP	G	TCGA-BC-A216-01A-11D-A152-10	1633986	51535232	7593751	79	1466											
ZNF350	59348	broad.mit.edu;bcgsc.ca	37	19	52469455	52469455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF350	NM_021632	exon5	c.T251C	p.V84A	TGATCAACTTTCC	.	89	5	113	0	.	227	G	52469455	A	G	52469455	3	3	12	1	0	0	0	0	1	0	0	0	17860	43	2	2	1351	2	ZNF350	19	52469455	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10	934223	52469455	6659528	80	1467											
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31023622	31023622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ASXL1	NM_015338	exon12	c.A3107G	p.N1036S	AACCCAATTGGAA	.	49	21	53	0	.	2057	G	31023622	A	G	31023622	3	3	12	1	0	0	0	0	1	0	0	0	1066	101	4	2	3163	2	ASXL1	20	31023622	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		31023622	32001898	81	1468											
EYA2	2139	ucsc.edu;bcgsc.ca	37	20	45702937	45702937	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	EYA2	NM_172110	exon7	c.T624C	p.S208S	GGCATCTCACAAC	.	47	4	65	0	.	523	C	45702937	T	C	45702937	2	2	12	1	0	0	0	0	0	0	0	1	5329	1538	54	2		2	EYA2	20	45702937	Silent	SNP	T	TCGA-BC-A216-01A-11D-A152-10	14679315	45702937	17322583	82	1469											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61528282	61528282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	DIDO1	NM_080797	exon7	c.C1655T	p.P552L	CCTGGAGGGGCTG	.	84	29	93	0	.	96	A	61528282	G	A	61528282	3	1	12	1	0	0	0	0	1	0	0	0	4522	1000	35	3	5136	3	DIDO1	20	61528282	Missense_Mutation	SNP	G	TCGA-BC-A216-01A-11D-A152-10	15825345	61528282	1497238	83	1470											
NCAM2	4685	ucsc.edu;bcgsc.ca;mdanderson.org	37	21	22804446	22804446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NCAM2	NM_004540	exon12	c.A1499C	p.Y500S	GTCCCTATGGAGT	.	197	65	216	2	.	94	C	22804446	A	C	22804446	3	2	12	1	0	0	0	0	1	0	0	0	10203	449	16	5	1545	5	NCAM2	21	22804446	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		22804446	25325449	84	1471											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26294307	26294307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	MYO18B,colon,carcinoma,-1	MYO18B	NM_032608	exon29	c.A4702G	p.K1568E	GGGGCCAAGAAGA	.	78	34	77	0	.	142	G	26294307	A	G	26294307	3	3	12	1	0	0	0	0	1	0	0	0	10066	131	5	2	4812	2	MYO18B	22	26294307	Missense_Mutation	SNP	A	TCGA-BC-A216-01A-11D-A152-10		26294307	25010259	85	1472											
ARX	170302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	25033826	25033826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ARX	NM_139058	exon1	c.G29C	p.C10S	TCGGAGCAGCCCT	.	361	83	341	0	.	130	G	25033826	C	G	25033826	3	3	12	1	0	0	0	0	1	0	0	0	1004	710	25	4	1679	4	ARX	23	25033826	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10		25033826	130236734	86	1473											
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102335094	102335094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NXF3	NM_022052	exon11	c.G978T	p.K326N	TAACCTCTTGTGG	.	88	37	76	0	.	205	A	102335094	C	A	102335094	3	1	12	1	0	0	0	0	1	0	0	0	10785	912	32	3	653	3	NXF3	23	102335094	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	77301268	102335094	52935466	87	1474											
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129159156	129159156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	BCORL1	NM_021946	exon6	c.C3880T	p.H1294Y	CGAAGGCACCTGT	.	109	35	134	1	.	294	T	129159156	C	T	129159156	3	4	12	1	0	0	0	0	1	0	0	0	1387	710	25	3	3902	3	BCORL1	23	129159156	Missense_Mutation	SNP	C	TCGA-BC-A216-01A-11D-A152-10	26824062	129159156	26111404	88	1475											
IDS	3423	ucsc.edu;bcgsc.ca	37	X	148578000	148578000	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IDS	NM_006123	exon6	c.T756C	p.D252D	CTCGGGATCGGGG	.	52	5	58	0	.	130	G	148578000	A	G	148578000	2	3	12	1	0	0	0	0	0	0	0	1	7503	330	12	2		2	IDS	23	148578000	Silent	SNP	A	TCGA-BC-A216-01A-11D-A152-10	19418844	148578000	6692560	89	1476											
ZBTB40	9923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22816452	22816452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZBTB40	NM_001083621	exon3	c.C11G	p.P4R	AGCTCCCCAACTA	.	53	25	47	0	.	91	G	22816452	C	G	22816452	3	3	13	1	0	0	0	0	1	0	0	0	17539	623	22	4	13	4	ZBTB40	1	22816452	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		22816452	226434169	1	1477											
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34312563	34312563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CSMD2	NM_052896	exon6	c.A835G	p.S279G	TGCTGCTGATAAC	.	46	12	53	0	.	103	C	34312563	T	C	34312563	3	2	13	1	0	0	0	0	1	0	0	0	3945	1580	55	2	9884	2	CSMD2	1	34312563	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	11496111	34312563	214938058	2	1478											
DNAJC6	9829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	65775451	65775451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DNAJC6	NM_001256864	exon1	c.G23A	p.R8Q	GCTACCGGAAAAA	.	120	29	146	0	.	272	A	65775451	G	A	65775451	3	1	13	1	0	0	0	0	1	0	0	0	4653	1131	39	1		1	DNAJC6	1	65775451	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	31462888	65775451	183475170	3	1479											
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75805298	75805298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC44A5	NM_152697	exon4	c.G70T	p.D24Y	CTGGGTCATATGT	.	65	14	74	0	.	95	A	75805298	C	A	75805298	3	1	13	1	0	0	0	0	1	0	0	0	14639	826	29	3	2284	3	SLC44A5	1	75805298	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	10029847	75805298	173445323	4	1480											
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110775555	110775555	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KCNC4	NM_001039574	exon4	c.G1842A	p.S614S	CCTCTCGTCCAAC	.	37	25	69	0	.	154	A	110775555	G	A	110775555	2	1	13	1	0	0	0	0	0	0	0	1	8017	1132	40	1		1	KCNC4	1	110775555	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	34970257	110775555	138475066	5	1481											
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150131276	150131276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLEKHO1	NM_016274	exon6	c.C788T	p.P263L	TGACGCCCACAGA	.	303	15	117	0	.	226	T	150131276	C	T	150131276	3	4	13	1	0	0	0	0	1	0	0	0	12084	623	22	3	810	3	PLEKHO1	1	150131276	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	39355721	150131276	99119345	6	1482											
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150131673	150131673	+	Silent	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLEKHO1	NM_016274	exon6	c.C1185G	p.L395L	CCACCTCAGACAG	.	390	16	165	0	.	226	G	150131673	C	G	150131673	2	3	13	1	0	0	0	0	0	0	0	1	12084	813	29	4		4	PLEKHO1	1	150131673	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	397	150131673	99118948	7	1483											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182823304	182823304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DHX9	NM_001357	exon6	c.A617G	p.D206G	GTCCTGATCACAA	.	166	100	223	0	.	92	G	182823304	A	G	182823304	3	3	13	1	0	0	0	0	1	0	0	0	4516	333	12	2	635	2	DHX9	1	182823304	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	32691631	182823304	66427317	8	1484											
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27528584	27528584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TRIM54	NM_032546	exon6	c.G868C	p.G290R	GTCCGCGGCCTCA	.	79	33	100	0	.	227	C	27528584	G	C	27528584	3	2	13	1	0	0	0	0	1	0	0	0	16525	1116	39	4	890	4	TRIM54	2	27528584	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10		27528584	215670789	9	1485											
LOC728819	0	ucsc.edu;mdanderson.org	37	2	43903342	43903342	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_001101330	exon1	c.C120T	p.H40H	GTGCTCGTGGTCT	.	377	173	448	0	.	.	A	43903342	G	A	43903342	2	1	13	1	0	0	0	0	0	0	0	1	8887	1136	40	1		1	LOC728819	2	43903342	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	16374758	43903342	199296031	10	1486											
RPS27A	6233	ucsc.edu;bcgsc.ca	37	2	55462628	55462628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RPS27A	NM_001135592	exon6	c.G386A	p.G129E	GTGCTGGGGTGTT	.	35	4	49	0	.	91	A	55462628	G	A	55462628	3	1	13	1	0	0	0	0	1	0	0	0	13639	1232	43	3	404	3	RPS27A	2	55462628	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	11559286	55462628	187736745	11	1487											
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	85361140	85361140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TCF7L1	NM_031283	exon2	c.C251A	p.A84E	CGCAGGCGGAGAG	.	41	24	80	0	.	585	A	85361140	C	A	85361140	3	1	13	1	0	0	0	0	1	0	0	0	15694	782	27	1	257	1	TCF7L1	2	85361140	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	29898512	85361140	157838233	12	1488											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109381074	109381074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RANBP2	NM_006267	exon20	c.G4079A	p.S1360N	GTAACAGCTGCTC	.	112	53	157	0	.	675	A	109381074	G	A	109381074	3	1	13	1	0	0	0	0	1	0	0	0	13028	971	34	3	4157	3	RANBP2	2	109381074	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	24019934	109381074	133818299	13	1489											
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	155555841	155555841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KCNJ3	NM_001260509	exon1	c.C554A	p.S185Y	AGATGTCCCAGCC	.	79	17	87	0	.	92	A	155555841	C	A	155555841	3	1	13	1	0	0	0	0	1	0	0	0	8052	855	30	3	556	3	KCNJ3	2	155555841	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	46174767	155555841	87643532	14	1490											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100239	168100239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	XIRP2	NM_152381	exon9	c.G2337T	p.L779F	GCCGTTGGACACA	.	230	114	305	0	.	104	T	168100239	G	T	168100239	3	4	13	1	0	0	0	0	1	0	0	0	17427	1339	47	3	2367	3	XIRP2	2	168100239	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	12544398	168100239	75099134	15	1491											
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179170928	179170928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	OSBPL6	NM_001201482	exon3	c.A17G	p.K6R	ATGAGAAGGGCAT	.	83	46	110	0	.	69	G	179170928	A	G	179170928	3	3	13	1	0	0	0	0	1	0	0	0	11281	72	3	2	19	2	OSBPL6	2	179170928	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	11070689	179170928	64028445	16	1492											
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191155206	191155206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HIBCH	NM_014362	exon5	c.T310G	p.S104A	CTTCCGAGATCAC	.	135	58	136	0	.	90	C	191155206	A	C	191155206	3	2	13	1	0	0	0	0	1	0	0	0	7100	304	11	5	890	5	HIBCH	2	191155206	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	11984278	191155206	52044167	17	1493											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196825086	196825086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DNAH7	NM_018897	exon18	c.T2789C	p.L930S	GATGCCAAAATAA	.	98	44	108	0	.	102	G	196825086	A	G	196825086	3	3	13	1	0	0	0	0	1	0	0	0	4606	131	5	2	9477	2	DNAH7	2	196825086	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	5669880	196825086	46374287	18	1494											
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201400832	201400832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SGOL2	NM_001160046	exon4	c.G354C	p.L118F	TAACTTGATAACT	.	97	40	101	0	.	94	C	201400832	G	C	201400832	3	2	13	1	0	0	0	0	1	0	0	0	14217	1281	45	4	364	4	SGOL2	2	201400832	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	4575746	201400832	41798541	19	1495											
ABI2	10152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204193320	204193320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ABI2	NM_005759	exon1	c.G83T	p.R28L	TGGAACGGGTGGC	.	80	34	104	0	.	90	T	204193320	G	T	204193320	3	4	13	1	0	0	0	0	1	0	0	0	89	1116	39	1	85	1	ABI2	2	204193320	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	2792488	204193320	39006053	20	1496											
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207530732	207530732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DYTN	NM_001093730	exon10	c.C1002A	p.N334K	GTATTGGTTTAAC	.	283	131	364	1	.	23	T	207530732	G	T	207530732	3	4	13	1	0	0	0	0	1	0	0	0	4861	1252	44	3	746	3	DYTN	2	207530732	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	3337412	207530732	35668641	21	1497											
TMPPE	643853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33134374	33134374	+	Silent	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TMPPE	NM_001039770	exon2	c.G1314C	p.L438L	GCTACCCAGCCTC	.	79	15	86	0	.	90	G	33134374	C	G	33134374	2	3	13	1	0	0	0	0	0	0	0	1	16235	581	21	4		4	TMPPE	3	33134374	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10		33134374	164888056	22	1498											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47030821	47030821	+	Silent	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NBEAL2	NM_015175	exon5	c.C423G	p.L141L	GCTTCTCTGCGAG	.	74	29	91	0	.	69	G	47030821	C	G	47030821	2	3	13	1	0	0	0	0	0	0	0	1	10189	900	32	4		4	NBEAL2	3	47030821	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	13896447	47030821	150991609	23	1499											
ATRIP	84126	broad.mit.edu;bcgsc.ca	37	3	48506379	48506379	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ATRIP	NM_130384	exon12	c.G2205A	p.K735K	GGACAAGCTCTTC	.	120	7	166	0	.	23	A	48506379	G	A	48506379	2	1	13	1	0	0	0	0	0	0	0	1	1205	962	34	3		3	ATRIP	3	48506379	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	1475558	48506379	149516051	24	1500											
COL7A1	1294	broad.mit.edu;mdanderson.org	37	3	48630129	48630129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	COL7A1	NM_000094	exon7	c.A850G	p.N284D	GGACGTTCACCTG	.	28	7	51	2	.	160	C	48630129	T	C	48630129	3	2	13	1	0	0	0	0	1	0	0	0	3704	1783	62	2	8432	2	COL7A1	3	48630129	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	123750	48630129	149392301	25	1501											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77629195	77629195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ROBO2	NM_002942	exon16	c.A2426C	p.Q809P	GTATTCAATACCG	.	98	86	206	0	.	328	C	77629195	A	C	77629195	3	2	13	1	0	0	0	0	1	0	0	0	13514	130	5	5	2490	5	ROBO2	3	77629195	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	28999066	77629195	120393235	26	1502											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113737618	113737618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KIAA1407	NM_020817	exon8	c.T1070A	p.L357Q	ACCTTCAGCTGAA	.	74	16	86	0	.	92	T	113737618	A	T	113737618	3	4	13	1	0	0	0	0	1	0	0	0	8229	188	7	4	1780	4	KIAA1407	3	113737618	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	36108423	113737618	84284812	27	1503											
HGD	3081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120365198	120365198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HGD	NM_000187	exon9	c.A565T	p.S189C	CTATGCTGAACCG	.	41	20	45	0	.	68	A	120365198	T	A	120365198	3	1	13	1	0	0	0	0	1	0	0	0	7084	1580	55	4	796	4	HGD	3	120365198	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	6627580	120365198	77657232	28	1504											
MYLK	4638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123411616	123411616	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MYLK	NM_053025	exon19	c.C3531T	p.G1177G	CGCCTGGCCAGCG	.	48	24	81	0	.	365	A	123411616	G	A	123411616	2	1	13	1	0	0	0	0	0	0	0	1	10056	1190	42	3		3	MYLK	3	123411616	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	3046418	123411616	74610814	29	1505											
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	157820591	157820591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SHOX2	NM_003030	exon3	c.G503A	p.R168Q	TTGGTCCGACTTC	.	202	95	264	1	.	90	T	157820591	C	T	157820591	3	4	13	1	0	0	0	0	1	0	0	0	14289	652	23	1	580	1	SHOX2	3	157820591	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	34408975	157820591	40201839	30	1506											
SENP2	59343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185318579	185318579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SENP2	NM_021627	exon5	c.G385A	p.D129N	ATAAGTGACTATC	.	186	89	166	1	.	658	A	185318579	G	A	185318579	3	1	13	1	0	0	0	0	1	0	0	0	14047	1290	45	3	403	3	SENP2	3	185318579	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	27497988	185318579	12703851	31	1507											
TMEM175	84286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	944240	944240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TMEM175	NM_032326	exon4	c.C224A	p.A75E	TTCTGGCAACACG	.	111	44	182	0	.	90	A	944240	C	A	944240	3	1	13	1	0	0	0	0	1	0	0	0	16088	710	25	3	234	3	TMEM175	4	944240	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		944240	190210036	32	1508											
TBC1D14	57533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7026792	7026792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TBC1D14	NM_001113361	exon13	c.T1819C	p.F607L	GACGTGTTCTGTC	.	203	47	276	1	.	92	C	7026792	T	C	7026792	3	2	13	1	0	0	0	0	1	0	0	0	15600	1725	60	2	1872	2	TBC1D14	4	7026792	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	6082552	7026792	184127484	33	1509											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724910	30724910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDH7	NM_032457	exon1	c.C1866A	p.S622R	GGGCAGCACTACG	.	89	36	68	0	.	229	A	30724910	C	A	30724910	3	1	13	1	0	0	0	0	1	0	0	0	11516	709	25	3	1868	3	PCDH7	4	30724910	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	23698118	30724910	160429366	34	1510											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725405	30725405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDH7	NM_032457	exon1	c.T2361A	p.N787K	AGGAAATCCCTTC	.	89	38	104	0	.	229	A	30725405	T	A	30725405	3	1	13	1	0	0	0	0	1	0	0	0	11516	1432	50	4	2363	4	PCDH7	4	30725405	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	495	30725405	160428871	35	1511											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936605	62936605	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	LPHN3	NM_015236	exon23	c.T4389C	p.A1463A	ACCGGCTCATTTG	.	86	56	69	0	.	508	C	62936605	T	C	62936605	2	2	13	1	0	0	0	0	0	0	0	1	8917	1538	54	2		2	LPHN3	4	62936605	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10	32211200	62936605	128217671	36	1512											
SLC4A4	8671	broad.mit.edu;bcgsc.ca	37	4	72412081	72412081	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC4A4	NM_001098484	exon19	c.T2457C	p.Y819Y	AGGGTATCACTTG	.	149	6	160	1	.	95	C	72412081	T	C	72412081	2	2	13	1	0	0	0	0	0	0	0	1	14656	1442	50	2		2	SLC4A4	4	72412081	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10	9475476	72412081	118742195	37	1513											
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164272591	164272591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NPY5R	NM_006174	exon4	c.T1166A	p.V389E	TCCATGTGGTAAC	.	154	86	207	0	.	523	A	164272591	T	A	164272591	3	1	13	1	0	0	0	0	1	0	0	0	10610	1696	59	4	1168	4	NPY5R	4	164272591	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	91860510	164272591	26881685	38	1514											
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169201507	169201507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DDX60	NM_017631	exon14	c.G1957C	p.E653Q	AATGTTCTTTCCA	.	247	144	307	0	.	25	G	169201507	C	G	169201507	3	3	13	1	0	0	0	0	1	0	0	0	4378	922	32	4	3281	4	DDX60	4	169201507	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	4928916	169201507	21952769	39	1515											
DDX60L	91351	broad.mit.edu;bcgsc.ca	37	4	169382864	169382864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DDX60L	NM_001012967	exon5	c.A592G	p.T198A	AAAAAGTTTGGTT	.	102	5	125	2	.	69	C	169382864	T	C	169382864	3	2	13	1	0	0	0	0	1	0	0	0	4379	1725	60	2	4664	2	DDX60L	4	169382864	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	181357	169382864	21771412	40	1516											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	169382958	169382958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DDX60L	NM_001012967	exon5	c.G498A	p.W166X	CATTCCCCAGGAA	.	89	30	114	0	.	69	T	169382958	C	T	169382958	4	4	13	1	0	0	0	0	0	1	0	0	4379	624	22	3	4758	3	DDX60L	4	169382958	Nonsense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	94	169382958	21771318	41	1517											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599577	3599577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IRX1	NM_024337	exon2	c.C515A	p.T172K	CCCTCACGCAGGT	.	227	116	236	0	.	228	A	3599577	C	A	3599577	3	1	13	1	0	0	0	0	1	0	0	0	7843	536	19	1	521	1	IRX1	5	3599577	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		3599577	177315683	42	1518											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10992757	10992757	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CTNND2	NM_001332	exon19	c.G3117T	p.S1039S	TGAAGACGAGGCT	.	123	60	159	0	.	293	A	10992757	C	A	10992757	2	1	13	1	0	0	0	0	0	0	0	1	4020	523	19	1		1	CTNND2	5	10992757	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	7393180	10992757	169922503	43	1519											
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132534838	132534838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	FSTL4	NM_015082	exon16	c.G2478C	p.E826D	TGACACCTCACAC	.	66	25	86	0	.	91	G	132534838	C	G	132534838	3	3	13	1	0	0	0	0	1	0	0	0	6079	680	24	4	54	4	FSTL4	5	132534838	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	121542081	132534838	48380422	44	1520											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140209550	140209550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDHA6	NM_018909	exon1	c.G1874A	p.G625E	GCGTGGGGCTGTA	.	118	49	130	0	.	92	A	140209550	G	A	140209550	3	1	13	1	0	0	0	0	1	0	0	0	11528	1232	43	3	1876	3	PCDHA6	5	140209550	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	7674712	140209550	40705710	45	1521											
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140347607	140347607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDHAC2	NM_031883	exon1	c.A1256G	p.Y419C	ACTCCTATACACT	.	92	49	61	0	.	26	G	140347607	A	G	140347607	3	3	13	1	0	0	0	0	1	0	0	0	11533	449	16	2	1258	2	PCDHAC2	5	140347607	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	138057	140347607	40567653	46	1522											
PCDHB7	56129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140554546	140554546	+	Silent	SNP	G	G	A	rs145014054	alternate_allele	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDHB7	NM_018940	exon1	c.G2130A	p.R710R	GGTGCGGCTGTGC	.	177	28	198	0	G|1.000;T|0.000	95	A	140554546	G	A	140554546	2	1	13	1	0	0	0	0	0	0	0	1	11547	1190	42	3		3	PCDHB7	5	140554546	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	206939	140554546	40360714	47	1523											
GPR151	134391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145895523	145895523	+	Missense_Mutation	SNP	C	C	T	rs181265546	alternate_allele	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GPR151	NM_194251	exon1	c.G154A	p.V52M	TTCCCACGAAGCC	.	105	17	134	0	C|0.999;G|0.000	92	T	145895523	C	T	145895523	3	4	13	1	0	0	0	0	1	0	0	0	6657	536	19	1	1109	1	GPR151	5	145895523	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	5340977	145895523	35019737	48	1524											
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178040784	178040784	+	Silent	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CLK4	NM_020666	exon6	c.T603A	p.A201A	TGAACGAGCTGCT	.	173	65	231	0	.	359	T	178040784	A	T	178040784	2	4	13	1	0	0	0	0	0	0	0	1	3539	291	11	4		4	CLK4	5	178040784	Silent	SNP	A	TCGA-BC-A217-01A-11D-A152-10	32145261	178040784	2874476	49	1525	12	2									
CLK4	57396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178040789	178040789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CLK4	NM_020666	exon6	c.G598A	p.A200T	GAGCTGCTTCACG	.	168	64	228	1	.	359	T	178040789	C	T	178040789	3	4	13	1	0	0	0	0	1	0	0	0	3539	797	28	3	879	3	CLK4	5	178040789	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	5	178040789	2874471	50	1526	12	2									
HIST1H3F	8968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26250628	26250628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HIST1H3F	NM_021018	exon1	c.A206G	p.Q69R	AGACGCTGGAATG	.	194	104	191	1	.	68	C	26250628	T	C	26250628	3	2	13	1	0	0	0	0	1	0	0	0	7160	1580	55	2	208	2	HIST1H3F	6	26250628	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10		26250628	144864439	51	1527											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31777908	31777908	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HSPA1L	NM_005527	exon2	c.A1842G	p.Q614Q	TCCTCCTTGGTAG	.	413	120	217	0	.	230	C	31777908	T	C	31777908	2	2	13	1	0	0	0	0	0	0	0	1	7410	1606	56	2		2	HSPA1L	6	31777908	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10	5527280	31777908	139337159	52	1528											
CPNE5	57699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36712088	36712088	+	Silent	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CPNE5	NM_020939	exon19	c.C1446A	p.P482P	GGACATGGGGAGC	.	80	40	119	0	.	91	T	36712088	G	T	36712088	2	4	13	1	0	0	0	0	0	0	0	1	3815	1335	47	3		3	CPNE5	6	36712088	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	4934180	36712088	134402979	53	1529											
TREM2	54209	broad.mit.edu;bcgsc.ca	37	6	41126794	41126794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TREM2	NM_018965	exon4	c.G493A	p.E165K	CTCCTTCCAAGAG	.	112	8	142	0	.	91	T	41126794	C	T	41126794	3	4	13	1	0	0	0	0	1	0	0	0	16468	864	30	3	207	3	TREM2	6	41126794	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	4414706	41126794	129988273	54	1530											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56480865	56480865	+	Missense_Mutation	SNP	C	C	T	rs200851382		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DST	NM_001723	exon24	c.G7400A	p.R2467H	TTTCTACGGGAGG	.	122	30	112	0	C|0.999;T|0.001	523	T	56480865	C	T	56480865	3	4	13	1	0	0	0	0	1	0	0	0	4783	536	19	1	12999	1	DST	6	56480865	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	15354071	56480865	114634202	55	1531											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72968729	72968729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RIMS1	NM_014989	exon18	c.C2968A	p.P990T	CGTTCTCCAACCA	.	104	41	98	0	.	144	A	72968729	C	A	72968729	3	1	13	1	0	0	0	0	1	0	0	0	13367	855	30	3	3201	3	RIMS1	6	72968729	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	16487864	72968729	98146338	56	1532											
SHPRH	257218	broad.mit.edu;bcgsc.ca	37	6	146248354	146248354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SHPRH	NM_173082	exon15	c.A3199G	p.K1067E	TTCCTTTGTGTTC	.	111	5	128	0	.	92	C	146248354	T	C	146248354	3	2	13	1	0	0	0	0	1	0	0	0	14291	1821	63	2	1960	2	SHPRH	6	146248354	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	73279625	146248354	24866713	57	1533											
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146755325	146755325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GRM1	NM_000838	exon9	c.C2978T	p.S993F	TGCCGTCCCACCT	.	44	11	72	0	.	1080	T	146755325	C	T	146755325	3	4	13	1	0	0	0	0	1	0	0	0	6796	855	30	3	3073	3	GRM1	6	146755325	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	506971	146755325	24359742	58	1534											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152583243	152583243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SYNE1	NM_182961	exon101	c.G18896T	p.W6299L	CTTTCCCATTTCA	.	212	49	238	0	.	607	A	152583243	C	A	152583243	3	1	13	1	0	0	0	0	1	0	0	0	15442	595	21	3	7754	3	SYNE1	6	152583243	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	5827918	152583243	18531824	59	1535											
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	81339555	81339556	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	.	.	.	p.P483Q	TATTACGGGATCT	.	126	58	197	0	.	.	TT	81339556	GG	TT	81339555	3	4	13	1	0	0	0	0	1	0	0	0	7085	1103	39	1	761	1	HGF	7	81339555	Missense_Mutation	DNP	GG	TCGA-BC-A217-01A-11D-A152-10		81339555	77799108	60	1536											
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103276844	103276844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RELN	NM_173054	exon18	c.G2141A	p.S714N	CCAAAGCTTTCAG	.	100	39	202	1	.	574	T	103276844	C	T	103276844	3	4	13	1	0	0	0	0	1	0	0	0	13220	797	28	3	8433	3	RELN	7	103276844	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	21937289	103276844	55861819	61	1537											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131912231	131912231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLXNA4	NM_020911	exon7	c.C1861T	p.P621S	TCCGGGGCACCTC	.	46	21	115	0	.	91	A	131912231	G	A	131912231	3	1	13	1	0	0	0	0	1	0	0	0	12122	1203	42	3	3927	3	PLXNA4	7	131912231	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	28635387	131912231	27226432	62	1538											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10467732	10467732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RP1L1	NM_178857	exon4	c.A3876T	p.L1292F	TTCAGCTAACTGC	.	49	26	132	0	.	139	A	10467732	T	A	10467732	3	1	13	1	0	0	0	0	1	0	0	0	13533	1519	53	4	3330	4	RP1L1	8	10467732	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10		10467732	135896290	63	1539											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77618337	77618337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZFHX4	NM_024721	exon2	c.G2014A	p.G672S	CCGGGTGGCTCTT	.	52	8	96	0	.	98	A	77618337	G	A	77618337	3	1	13	1	0	0	0	0	1	0	0	0	17632	1348	47	3	2016	3	ZFHX4	8	77618337	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	67150605	77618337	68745685	64	1540											
ANXA13	312	hgsc.bcm.edu;bcgsc.ca	37	8	124701110	124701112	+	Frame_Shift_Del	DEL	CCG	CCG	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ANXA13	NM_001003954	exon10	c.840_841del	p.280_281del	ACTTTACCGAGAG	.	115	16	184	0	.	93	-	124701112	CCG	-	124701110	7	5	13	1	0	1	0	1	0	0	0	0	717	521	18	0	243	0	ANXA13	8	124701110	Frame_Shift_Del	DEL	CCG	TCGA-BC-A217-01A-11D-A152-10	47082773	124701110	21662912	65	1541											
GSDMC	56169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	130777987	130777987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GSDMC	NM_031415	exon4	c.G457C	p.D153H	GGTTGTCCCCTCT	.	53	18	110	0	.	93	G	130777987	C	G	130777987	3	3	13	1	0	0	0	0	1	0	0	0	6818	855	30	4	1113	4	GSDMC	8	130777987	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	6076877	130777987	15586035	66	1542											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	79824389	79824389	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	VPS13A	NM_001018038	exon6	c.C436T	p.Q146X	GTTACACAGATCA	.	233	127	332	0	.	161	T	79824389	C	T	79824389	4	4	13	1	0	0	0	0	0	1	0	0	17186	479	17	3	458	3	VPS13A	9	79824389	Nonsense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		79824389	61389042	67	1543											
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104449365	104449365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GRIN3A	NM_133445	exon2	c.G817T	p.D273Y	TCCAGTCTTCCTG	.	212	77	258	0	.	96	A	104449365	C	A	104449365	3	1	13	1	0	0	0	0	1	0	0	0	6783	913	32	3	2562	3	GRIN3A	9	104449365	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	24624976	104449365	36764066	68	1544											
ADAMTSL2	9719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136402628	136402628	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ADAMTSL2	NM_014694	exon3	c.G192A	p.G64G	TTGCGGGGGTGGG	.	60	25	115	0	.	91	A	136402628	G	A	136402628	2	1	13	1	0	0	0	0	0	0	0	1	275	1219	43	3		3	ADAMTSL2	9	136402628	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	31953263	136402628	4810803	69	1545											
AKR1C1	1645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5009199	5009199	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	AKR1C1	NM_001353	exon3	c.T333C	p.V111V	TTATGTTGACCTC	.	311	137	347	0	.	516	C	5009199	T	C	5009199	2	2	13	1	0	0	0	0	0	0	0	1	469	1799	63	2		2	AKR1C1	10	5009199	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10		5009199	130525548	70	1546											
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23297251	23297251	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ARMC3	NM_173081	exon15	c.C1876A	p.R626R	TATGGACGAAGTA	.	138	21	151	0	.	90	A	23297251	C	A	23297251	2	1	13	1	0	0	0	0	0	0	0	1	952	528	19	1		1	ARMC3	10	23297251	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	18288052	23297251	112237496	71	1547											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26462898	26462898	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MYO3A	NM_017433	exon30	c.T3705C	p.A1235A	GGAAGCTATGATC	.	136	61	156	0	.	1007	C	26462898	T	C	26462898	2	2	13	1	0	0	0	0	0	0	0	1	10076	1509	53	2		2	MYO3A	10	26462898	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10	3165647	26462898	109071849	72	1548											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88206050	88206050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	WAPAL	NM_015045	exon16	c.G3271A	p.E1091K	TCTCTTCTGTACC	.	180	104	261	0	.	91	T	88206050	C	T	88206050	3	4	13	1	0	0	0	0	1	0	0	0	17245	922	32	3	317	3	WAPAL	10	88206050	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	61743152	88206050	47328697	73	1549											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94225544	94225544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IDE	NM_004969	exon20	c.A2377G	p.I793V	AGTATATCTCGAT	.	186	53	282	0	.	92	C	94225544	T	C	94225544	3	2	13	1	0	0	0	0	1	0	0	0	7493	1435	50	2	706	2	IDE	10	94225544	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	6019494	94225544	41309203	74	1550											
SAA2	6289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18267513	18267513	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SAA2	NM_030754	exon3	c.174delG	p.G58fs	ATAGTTCCCCCGA	.	372	60	429	0	.	514	-	18267513	C	-	18267513	7	5	13	1	0	1	0	1	0	0	0	0	13799	842	30	0	228	0	SAA2	11	18267513	Frame_Shift_Del	DEL	C	TCGA-BC-A217-01A-11D-A152-10		18267513	116739003	75	1551											
SAA1	6288	hgsc.bcm.edu;broad.mit.edu	37	11	18290820	18290820	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SAA1	NM_199161	exon3	c.170delG	p.R57fs	ATGCTCGGGGGAA	.	209	60	217	0	.	650	-	18290820	G	-	18290820	7	5	13	1	0	1	0	1	0	0	0	0	13798	1116	39	0	176	0	SAA1	11	18290820	Frame_Shift_Del	DEL	G	TCGA-BC-A217-01A-11D-A152-10	23307	18290820	116715696	76	1552											
SLC39A13	91252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47436693	47436693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC39A13	NM_001128225	exon9	c.G1023T	p.L341F	CCTCTTGGAAGAA	.	127	48	136	0	.	90	T	47436693	G	T	47436693	3	4	13	1	0	0	0	0	1	0	0	0	14616	1339	47	3	1053	3	SLC39A13	11	47436693	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	29145873	47436693	87569823	77	1553											
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120317715	120317715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ARHGEF12	NM_015313	exon18	c.G1510C	p.E504Q	GATGCAGAGCGAG	.	143	42	217	0	.	661	C	120317715	G	C	120317715	3	2	13	1	0	0	0	0	1	0	0	0	897	943	33	4	1580	4	ARHGEF12	11	120317715	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	72881022	120317715	14688801	78	1554											
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121474906	121474906	+	Silent	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SORL1	NM_003105	exon33	c.A4524G	p.T1508T	AGCCACACACAGC	.	50	4	52	0	.	228	G	121474906	A	G	121474906	2	3	13	1	0	0	0	0	0	0	0	1	14934	146	6	2		2	SORL1	11	121474906	Silent	SNP	A	TCGA-BC-A217-01A-11D-A152-10	1157191	121474906	13531610	79	1555											
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21643210	21643210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RECQL	NM_032941	exon5	c.G317C	p.G106A	TCCTTTCCAGCCA	.	94	88	175	0	.	228	G	21643210	C	G	21643210	3	3	13	1	0	0	0	0	1	0	0	0	13201	855	30	4	1680	4	RECQL	12	21643210	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		21643210	112208685	80	1556											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41967431	41967431	+	Silent	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PDZRN4	NM_001164595	exon10	c.G2850T	p.L950L	GCACCTGGTTAGG	.	60	14	91	0	.	296	T	41967431	G	T	41967431	2	4	13	1	0	0	0	0	0	0	0	1	11710	1335	47	3		3	PDZRN4	12	41967431	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	20324221	41967431	91884464	81	1557											
ACVRL1	94	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52307458	52307458	+	Silent	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ACVRL1	NM_000020	exon4	c.C429T	p.V143V	GCATGTCCGACGG	.	21	7	54	0	.	521	T	52307458	C	T	52307458	2	4	13	1	0	0	0	0	0	0	0	1	225	842	30	3		3	ACVRL1	12	52307458	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	10340027	52307458	81544437	82	1558											
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54447739	54447739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HOXC4	NM_014620	exon3	c.C33A	p.N11K	CTCTAACTACATC	.	87	20	112	0	.	91	A	54447739	C	A	54447739	3	1	13	1	0	0	0	0	1	0	0	0	7313	564	20	3	35	3	HOXC4	12	54447739	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	2140281	54447739	79404156	83	1559											
OR10P1	121130	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56030750	56030750	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	OR10P1	NM_206899	exon1	c.C75A	p.G25G	GCAGGGCCCCCTG	.	105	26	176	1	.	69	A	56030750	C	A	56030750	2	1	13	1	0	0	0	0	0	0	0	1	10915	726	26	3		3	OR10P1	12	56030750	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	1583011	56030750	77821145	84	1560											
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65448938	65448938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	WIF1	NM_007191	exon9	c.C978G	p.C326W	ACATTGGCATTTG	.	95	24	149	0	.	1110	C	65448938	G	C	65448938	3	2	13	1	0	0	0	0	1	0	0	0	17363	1195	42	4	169	4	WIF1	12	65448938	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	9418188	65448938	68402957	85	1561											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39357273	39357273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	FREM2	NM_207361	exon5	c.C5708T	p.P1903L	TCATTCCCATCAG	.	182	120	189	0	.	100	T	39357273	C	T	39357273	3	4	13	1	0	0	0	0	1	0	0	0	6045	623	22	3	5726	3	FREM2	13	39357273	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		39357273	75812605	86	1562											
TRIM13	10206	ucsc.edu;mdanderson.org	37	13	50592279	50592279	+	RNA	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TRIM13	.	.	.	.	TAAGTTTAAACTT	.	95	69	284	0	.	228	C	50592279	T	C	50592279	1	2	13	0	1	0	0	0	0	0	0	0	16485	1769	61	2		2	TRIM13	13	50592279	RNA	SNP	T	TCGA-BC-A217-01A-11D-A152-10	11235006	50592279	64577599	87	1563											
NID2	22795	ucsc.edu;bcgsc.ca	37	14	52534860	52534860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NID2	NM_007361	exon2	c.T250C	p.S84P	GAGTGGAGATGAT	.	36	4	51	0	.	158	G	52534860	A	G	52534860	3	3	13	1	0	0	0	0	1	0	0	0	10415	304	11	2	3961	2	NID2	14	52534860	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10		52534860	54814680	88	1564											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64518635	64518635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SYNE2	NM_182914	exon48	c.G8004T	p.L2668F	TGCCTTGACCACT	.	252	126	291	0	.	164	T	64518635	G	T	64518635	3	4	13	1	0	0	0	0	1	0	0	0	15443	1281	45	3	8190	3	SYNE2	14	64518635	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	11983775	64518635	42830905	89	1565											
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41865515	41865515	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TYRO3	NM_006293	exon17	c.G1995A	p.E665E	GGCAGAGGACATG	.	62	12	115	0	.	1388	A	41865515	G	A	41865515	2	1	13	1	0	0	0	0	0	0	0	1	16811	991	35	3		3	TYRO3	15	41865515	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10		41865515	60665877	90	1566											
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42126945	42126945	+	Silent	SNP	C	C	T	rs140704362		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	JMJD7-PLA2G4B	NM_005090	exon2	c.C72T	p.C24C	GCTCTGCGTGCCT	.	54	17	105	0	C|1.000;T|0.000	135	T	42126945	C	T	42126945	2	4	13	1	0	0	0	0	0	0	0	1	7955	776	27	1		1	JMJD7-PLA2G4B	15	42126945	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	261430	42126945	60404447	91	1567											
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49148299	49148299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SHC4	NM_203349	exon8	c.C1093T	p.H365Y	CGGCATGGCTATC	.	123	37	163	0	.	95	A	49148299	G	A	49148299	3	1	13	1	0	0	0	0	1	0	0	0	14273	1348	47	3	819	3	SHC4	15	49148299	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	7021354	49148299	53383093	92	1568											
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94901825	94901825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MCTP2	NM_001159643	exon9	c.G1285C	p.E429Q	AAGCATGAGGAAC	.	176	95	182	0	.	93	C	94901825	G	C	94901825	3	2	13	1	0	0	0	0	1	0	0	0	9401	1291	45	4	1319	4	MCTP2	15	94901825	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	45753526	94901825	7629567	93	1569											
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	845334	845334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CHTF18	NM_022092	exon16	c.C2153A	p.T718N	GGATCACCTTCCC	.	52	27	48	0	.	227	A	845334	C	A	845334	3	1	13	1	0	0	0	0	1	0	0	0	3414	507	18	3	2215	3	CHTF18	16	845334	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		845334	89509419	94	1570											
TELO2	9894	hgsc.bcm.edu;bcgsc.ca	37	16	1551758	1551758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TELO2	NM_016111	exon11	c.G1456C	p.D486H	GGCTCTGACTCGG	.	37	12	49	0	.	90	C	1551758	G	C	1551758	3	2	13	1	0	0	0	0	1	0	0	0	15754	1290	45	4	1494	4	TELO2	16	1551758	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	706424	1551758	88802995	95	1571											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31372494	31372494	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ITGAX	NM_000887	exon9	c.T972C	p.D324D	GAAAGATATTCAA	.	96	65	128	0	.	229	C	31372494	T	C	31372494	2	2	13	1	0	0	0	0	0	0	0	1	7889	1403	49	2		2	ITGAX	16	31372494	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10	29820736	31372494	58982259	96	1572											
BCMO1	53630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81303890	81303890	+	Missense_Mutation	SNP	A	A	G	rs144501132	byfrequency	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BCMO1	NM_017429	exon7	c.A970G	p.I324V	GACGTCATTGCCT	.	50	11	92	0	A|1.000;G|0.000	90	G	81303890	A	G	81303890	3	3	13	1	0	0	0	0	1	0	0	0	1384	217	8	2	996	2	BCMO1	16	81303890	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	49931396	81303890	9050863	97	1573											
ANKRD11	29123	ucsc.edu;bcgsc.ca	37	16	89351544	89351544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	ANKRD11,NS,carcinoma,+1	ANKRD11	NM_001256183	exon9	c.T1406C	p.F469S	TTTCCGAAGCGAA	.	42	4	43	0	.	139	G	89351544	A	G	89351544	3	3	13	1	0	0	0	0	1	0	0	0	639	246	9	2	6605	2	ANKRD11	16	89351544	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	8047654	89351544	1003209	98	1574											
GEMIN4	50628	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	648872	648872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GEMIN4	NM_015721	exon2	c.A2411G	p.Q804R	TGGGCCTGGGAGG	.	77	25	86	0	.	206	C	648872	T	C	648872	3	2	13	1	0	0	0	0	1	0	0	0	6330	1580	55	2	769	2	GEMIN4	17	648872	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10		648872	80546338	99	1575											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	TP53,brain,glioma,-1	TP53	NM_000546	exon8	c.G818A	p.R273H	CAAACACGCACCT	.	33	27	61	0	C|0.002;G|0.998	70225	T	7577120	C	T	7577120	3	4	13	1	0	0	0	0	1	0	0	0	16378	536	19	1	468	1	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	6928248	7577120	73618090	100	1576											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11775087	11775087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DNAH9	NM_001372	exon52	c.A10226T	p.Y3409F	GGCCCTACCTGAG	.	77	66	154	0	.	168	T	11775087	A	T	11775087	3	4	13	1	0	0	0	0	1	0	0	0	4608	391	14	4	10432	4	DNAH9	17	11775087	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	4197967	11775087	69420123	101	1577											
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33749277	33749277	+	Silent	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLFN12	NM_018042	exon2	c.C771A	p.L257L	GTCATCGAGGTCA	.	167	60	122	0	.	91	T	33749277	G	T	33749277	2	4	13	1	0	0	0	0	0	0	0	1	14734	1045	37	1		1	SLFN12	17	33749277	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	21974190	33749277	47445933	102	1578											
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41345518	41345518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NBR1	NM_031862	exon12	c.C1387T	p.H463Y	CTTTCTCACAAAG	.	227	32	182	0	.	130	T	41345518	C	T	41345518	3	4	13	1	0	0	0	0	1	0	0	0	10200	826	29	3	1429	3	NBR1	17	41345518	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	7596241	41345518	39849692	103	1579											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48629417	48629417	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SPATA20	NM_022827	exon14	c.G1833A	p.A611A	GAGTGCGTGGCTC	.	248	81	223	0	.	90	A	48629417	G	A	48629417	2	1	13	1	0	0	0	0	0	0	0	1	15005	1132	40	1		1	SPATA20	17	48629417	Silent	SNP	G	TCGA-BC-A217-01A-11D-A152-10	7283899	48629417	32565793	104	1580											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9182491	9182491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ANKRD12	NM_001083625	exon2	c.A61G	p.M21V	AGCAATATGGTAG	.	53	35	81	0	.	92	G	9182491	A	G	9182491	3	3	13	1	0	0	0	0	1	0	0	0	640	449	16	2	63	2	ANKRD12	18	9182491	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10		9182491	68894757	105	1581											
HRH4	59340	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22057509	22057509	+	Silent	SNP	C	C	A	rs115905515	byfrequency;alternate_allele	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HRH4	NM_021624	exon3	c.C1156A	p.R386R	CACAGTCGGTCAG	.	80	30	83	0	C|0.998;T|0.002	92	A	22057509	C	A	22057509	2	1	13	1	0	0	0	0	0	0	0	1	7358	875	31	1		1	HRH4	18	22057509	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	12875018	22057509	56019739	106	1582											
ZNF521	25925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22806650	22806650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZNF521	NM_015461	exon4	c.A1232G	p.N411S	TGTTTGTTGCAGT	.	197	112	275	2	.	275	C	22806650	T	C	22806650	3	2	13	1	0	0	0	0	1	0	0	0	17962	1725	60	2	2723	2	ZNF521	18	22806650	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	749141	22806650	55270598	107	1583											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28650707	28650707	+	Silent	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DSC2	NM_024422	exon14	c.T2235A	p.P745P	ATCTCCAGGAGCT	.	114	73	166	0	.	517	T	28650707	A	T	28650707	2	4	13	1	0	0	0	0	0	0	0	1	4766	175	7	4		4	DSC2	18	28650707	Silent	SNP	A	TCGA-BC-A217-01A-11D-A152-10	5844057	28650707	49426541	108	1584											
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32438291	32438291	+	Silent	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DTNA	NM_001390	exon15	c.A1494G	p.E498E	GCATGAACAAGCT	.	74	42	113	0	.	153	G	32438291	A	G	32438291	2	3	13	1	0	0	0	0	0	0	0	1	4788	40	2	2		2	DTNA	18	32438291	Silent	SNP	A	TCGA-BC-A217-01A-11D-A152-10	3787584	32438291	45638957	109	1585											
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56401614	56401614	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MALT1	NM_006785	exon12	c.1475+1G>A	.	TGCCACGTAAGAA	.	117	73	198	0	.	660	A	56401614	G	A	56401614	5	1	13	1	0	0	0	0	0	0	1	0	9202	1159	40	1	1522	1	MALT1	18	56401614	Splice_Site	SNP	G	TCGA-BC-A217-01A-11D-A152-10	23963323	56401614	21675634	110	1586											
PIGN	23556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59768329	59768329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PIGN	NM_176787	exon22	c.A2056G	p.I686V	TAATAATTTGATT	.	56	37	81	0	.	227	C	59768329	T	C	59768329	3	2	13	1	0	0	0	0	1	0	0	0	11893	1493	52	2	779	2	PIGN	18	59768329	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	3366715	59768329	18308919	111	1587											
KLF16	83855	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1863102	1863102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KLF16	NM_031918	exon1	c.C395T	p.P132L	CAGTCCGGGAAGG	.	25	5	29	0	.	90	A	1863102	G	A	1863102	3	1	13	1	0	0	0	0	1	0	0	0	8344	1116	39	1	371	1	KLF16	19	1863102	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10		1863102	57265881	112	1588											
ZNF229	7772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934591	44934591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZNF229	NM_014518	exon6	c.G365C	p.C122S	ACTCTACAGTCTT	.	106	25	169	0	.	94	G	44934591	C	G	44934591	3	3	13	1	0	0	0	0	1	0	0	0	17779	478	17	4	2116	4	ZNF229	19	44934591	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	43071489	44934591	14194392	113	1589											
CYTH2	9266	ucsc.edu;bcgsc.ca	37	19	48981822	48981822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CYTH2	NM_017457	exon11	c.A1088G	p.E363G	AGGAGGAGAAGGA	.	46	4	67	0	.	228	G	48981822	A	G	48981822	3	3	13	1	0	0	0	0	1	0	0	0	4204	304	11	2	1130	2	CYTH2	19	48981822	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	4047231	48981822	10147161	114	1590											
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51133064	51133064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SYT3	NM_032298	exon3	c.C1039A	p.R347S	TCTTGCGGTCAGG	.	35	6	91	0	.	155	T	51133064	G	T	51133064	3	4	13	1	0	0	0	0	1	0	0	0	15472	1116	39	1	757	1	SYT3	19	51133064	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	2151242	51133064	7995919	115	1591											
LILRA5	353514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54823336	54823336	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	LILRA5	NM_181879	exon4	c.G207T	p.G69G	CAGGGTCCCCTGA	.	204	122	297	1	.	91	A	54823336	C	A	54823336	2	1	13	1	0	0	0	0	0	0	0	1	8788	842	30	3		3	LILRA5	19	54823336	Silent	SNP	C	TCGA-BC-A217-01A-11D-A152-10	3690272	54823336	4305647	116	1592											
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55111991	55111991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	LILRA1	NM_006863	exon9	c.C1327A	p.L443I	AACACCCTCAGCC	.	62	15	103	0	.	93	A	55111991	C	A	55111991	3	1	13	1	0	0	0	0	1	0	0	0	8784	681	24	3	1357	3	LILRA1	19	55111991	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10	288655	55111991	4016992	117	1593											
ERGIC3	51614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34130635	34130635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ERGIC3	NM_015966	exon4	c.C312A	p.F104L	CCTGTTCAAGCAA	.	140	53	150	0	.	585	A	34130635	C	A	34130635	3	1	13	1	0	0	0	0	1	0	0	0	5225	825	29	3	326	3	ERGIC3	20	34130635	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		34130635	28894885	118	1594											
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	44686186	44686186	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC12A5	NM_001134771	exon26	c.T3362G	p.L1121R	AGCACCTGGACCG	.	174	67	204	0	.	156	G	44686186	T	G	44686186	3	3	13	1	0	0	0	0	1	0	0	0	14386	1580	55	5	3520	5	SLC12A5	20	44686186	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	10555551	44686186	18339334	119	1595											
CDH22	64405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44856179	44856179	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CDH22	NM_021248	exon4	c.638delG	p.G213fs	TGCTCGCCGTCCA	.	54	30	62	0	.	95	-	44856179	C	-	44856179	7	5	13	1	0	1	0	1	0	0	0	0	3107	739	26	0	1884	0	CDH22	20	44856179	Frame_Shift_Del	DEL	C	TCGA-BC-A217-01A-11D-A152-10	169993	44856179	18169341	120	1596											
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42622762	42622762	+	Silent	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BACE2	NM_138992	exon7	c.T1068A	p.P356P	CTTCCCTAAAATC	.	209	96	218	0	.	92	A	42622762	T	A	42622762	2	1	13	1	0	0	0	0	0	0	0	1	1282	1509	53	4		4	BACE2	21	42622762	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10		42622762	5507133	121	1597											
CECR1	51816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17662466	17662466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CECR1	NM_017424	exon9	c.G1443T	p.K481N	ACTGTACCTGCAG	.	121	62	164	0	.	91	A	17662466	C	A	17662466	3	1	13	1	0	0	0	0	1	0	0	0	3205	521	18	3	96	3	CECR1	22	17662466	Missense_Mutation	SNP	C	TCGA-BC-A217-01A-11D-A152-10		17662466	33642100	122	1598											
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	31533849	31533849	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLA2G3	NM_015715	exon4	c.A913T	p.K305X	GCTGCTTCTGTCG	.	189	101	304	0	.	226	A	31533849	T	A	31533849	4	1	13	1	0	0	0	0	0	1	0	0	12000	1792	62	4	632	4	PLA2G3	22	31533849	Nonsense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	13871383	31533849	19770717	123	1599											
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35717981	35717981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TOM1	NM_001135732	exon3	c.A167G	p.K56R	TAAAGAAGAGAAT	.	71	24	104	0	.	91	G	35717981	A	G	35717981	3	3	13	1	0	0	0	0	1	0	0	0	16348	72	3	2	177	2	TOM1	22	35717981	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	4184132	35717981	15586585	124	1600											
BAIAP2L2	80115	ucsc.edu;bcgsc.ca	37	22	38483254	38483254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BAIAP2L2	NM_025045	exon11	c.A1136G	p.E379G	TACGCCTCGGGGA	.	36	5	63	0	.	91	C	38483254	T	C	38483254	3	2	13	1	0	0	0	0	1	0	0	0	1303	1551	54	2	469	2	BAIAP2L2	22	38483254	Missense_Mutation	SNP	T	TCGA-BC-A217-01A-11D-A152-10	2765273	38483254	12821312	125	1601											
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011223	105011223	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IL1RAPL2	NM_017416	exon11	c.T1630C	p.L544L	AGCAAATTAAATT	.	210	109	246	0	.	194	C	105011223	T	C	105011223	2	2	13	1	0	0	0	0	0	0	0	1	7662	1490	52	2		2	IL1RAPL2	23	105011223	Silent	SNP	T	TCGA-BC-A217-01A-11D-A152-10		105011223	50259337	126	1602											
CUL4B	8450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119669737	119669737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CUL4B	NM_003588	exon18	c.T2162G	p.L721R	CACTGAAGTTTCC	.	573	136	574	0	.	227	C	119669737	A	C	119669737	3	2	13	1	0	0	0	0	1	0	0	0	4058	72	3	5	599	5	CUL4B	23	119669737	Missense_Mutation	SNP	A	TCGA-BC-A217-01A-11D-A152-10	14658514	119669737	35600823	127	1603											
IDH3G	3421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153055245	153055245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IDH3G	NM_004135	exon5	c.C268T	p.H90Y	TCACGTGCACCTC	.	38	12	66	0	.	90	A	153055245	G	A	153055245	3	1	13	1	0	0	0	0	1	0	0	0	7498	1319	46	3	1012	3	IDH3G	23	153055245	Missense_Mutation	SNP	G	TCGA-BC-A217-01A-11D-A152-10	33385508	153055245	2215315	128	1604											
GRIK3	2899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	37282833	37282833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GRIK3	NM_000831	exon13	c.G1919T	p.G640V	CAGATGCCACCAA	.	188	72	127	0	.	158	A	37282833	C	A	37282833	3	1	14	1	0	0	0	0	1	0	0	0	6775	739	26	3	856	3	GRIK3	1	37282833	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10		37282833	211967788	1	1605											
DAB1	1600	hgsc.bcm.edu;bcgsc.ca	37	1	57480890	57480890	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DAB1	NM_021080	exon14	c.A1110G	p.Q370Q	AACAGTTTGTGTG	.	64	5	41	0	.	93	C	57480890	T	C	57480890	2	2	14	1	0	0	0	0	0	0	0	1	4217	1838	64	2		2	DAB1	1	57480890	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	20198057	57480890	191769731	2	1606											
RAVER2	55225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65255125	65255125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RAVER2	NM_018211	exon5	c.A1033G	p.K345E	ATTATGAAAAGTT	.	80	27	82	0	.	135	G	65255125	A	G	65255125	3	3	14	1	0	0	0	0	1	0	0	0	13095	247	9	2	1051	2	RAVER2	1	65255125	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	7774235	65255125	183995496	3	1607											
PKN2	5586	hgsc.bcm.edu;bcgsc.ca	37	1	89299097	89299097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PKN2	NM_006256	exon22	c.T2921C	p.F974S	AAATGTTCAGAGA	.	70	4	69	0	.	522	C	89299097	T	C	89299097	3	2	14	1	0	0	0	0	1	0	0	0	11980	1783	62	2	3007	2	PKN2	1	89299097	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	24043972	89299097	159951524	4	1608											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103481268	103481268	+	Missense_Mutation	SNP	C	C	A	rs150428394	alternate_allele	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	COL11A1	NM_080629	exon12	c.G1480T	p.A494S	CATCAGCCCCTGG	.	129	45	134	0	C|1.000;T|0.000	586	A	103481268	C	A	103481268	3	1	14	1	0	0	0	0	1	0	0	0	3667	739	26	3	4200	3	COL11A1	1	103481268	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	14182171	103481268	145769353	5	1609											
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114500750	114500750	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HIPK1	NM_198268	exon8	c.T1818C	p.D606D	TTCAGATGTCTCA	.	136	50	112	0	.	361	C	114500750	T	C	114500750	2	2	14	1	0	0	0	0	0	0	0	1	7116	1461	51	2		2	HIPK1	1	114500750	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	11019482	114500750	134749871	6	1610											
MTX1	4580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155180142	155180142	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MTX1	NM_198883	exon2	c.T534C	p.Y178Y	GACCTATGCCAGA	.	119	51	106	0	.	91	C	155180142	T	C	155180142	2	2	14	1	0	0	0	0	0	0	0	1	9967	1471	51	2		2	MTX1	1	155180142	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	40679392	155180142	94070479	7	1611											
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196451495	196451495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KCNT2	NM_198503	exon4	c.G290C	p.W97S	TTCACCCAAAAGA	.	52	19	59	0	.	159	G	196451495	C	G	196451495	3	3	14	1	0	0	0	0	1	0	0	0	8092	595	21	4	3217	4	KCNT2	1	196451495	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	41271353	196451495	52799126	8	1612											
IARS2	55699	hgsc.bcm.edu;bcgsc.ca	37	1	220276069	220276069	+	Silent	SNP	A	A	G	rs112842443		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	IARS2	NM_018060	exon7	c.A900G	p.Q300Q	CACACAACCTTGG	.	76	4	65	0	A|0.500;G|0.500	94	G	220276069	A	G	220276069	2	3	14	1	0	0	0	0	0	0	0	1	7474	40	2	2		2	IARS2	1	220276069	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	23824574	220276069	28974552	9	1613											
EPHX1	2052	hgsc.bcm.edu;bcgsc.ca	37	1	226016567	226016567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EPHX1	NM_001136018	exon2	c.A137G	p.D46G	AGGACGACAGCAT	.	99	5	84	0	.	281	G	226016567	A	G	226016567	3	3	14	1	0	0	0	0	1	0	0	0	5179	275	10	2	139	2	EPHX1	1	226016567	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	5740498	226016567	23234054	10	1614											
RGS7	6000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241262022	241262022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RGS7	NM_002924	exon3	c.G119A	p.G40E	GGAATTCCATTTT	.	41	18	44	1	.	232	T	241262022	C	T	241262022	3	4	14	1	0	0	0	0	1	0	0	0	13310	855	30	3	1408	3	RGS7	1	241262022	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	15245455	241262022	7988599	11	1615											
CNST	163882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246754974	246754974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CNST	NM_152609	exon2	c.A110T	p.D37V	CATCAGATGAAAA	.	143	45	119	0	.	90	T	246754974	A	T	246754974	3	4	14	1	0	0	0	0	1	0	0	0	3634	333	12	4	112	4	CNST	1	246754974	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	5492952	246754974	2495647	12	1616											
NRBP1	29959	hgsc.bcm.edu;bcgsc.ca	37	2	27656637	27656637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NRBP1	NM_013392	exon3	c.A308G	p.E103G	TCTCTGAACGCAA	.	81	4	74	0	.	334	G	27656637	A	G	27656637	3	3	14	1	0	0	0	0	1	0	0	0	10642	246	9	2	314	2	NRBP1	2	27656637	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		27656637	215542736	13	1617											
FAM98A	25940	hgsc.bcm.edu;bcgsc.ca	37	2	33811687	33811687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FAM98A	NM_015475	exon6	c.T662C	p.L221P	ATTAGCAGCTTTC	.	87	4	84	0	.	91	G	33811687	A	G	33811687	3	3	14	1	0	0	0	0	1	0	0	0	5656	188	7	2	906	2	FAM98A	2	33811687	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	6155050	33811687	209387686	14	1618											
DYNC2LI1	51626	hgsc.bcm.edu;bcgsc.ca	37	2	44032355	44032355	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DYNC2LI1	NM_001193464	exon12	c.A966G	p.E322E	AAATGAAGTCGAT	.	119	6	99	0	.	91	G	44032355	A	G	44032355	2	3	14	1	0	0	0	0	0	0	0	1	4847	69	3	2		2	DYNC2LI1	2	44032355	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	10220668	44032355	199167018	15	1619											
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55254181	55254181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RTN4	NM_020532	exon3	c.A1054G	p.K352E	CCAATTTAGTAAG	.	66	30	84	0	.	155	C	55254181	T	C	55254181	3	2	14	1	0	0	0	0	1	0	0	0	13728	1763	61	2	2590	2	RTN4	2	55254181	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	11221826	55254181	187945192	16	1620											
EIF2AK3	9451	hgsc.bcm.edu;bcgsc.ca	37	2	88879055	88879055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EIF2AK3	NM_004836	exon11	c.A1867G	p.R623G	GGATCCTCTTGAT	.	90	5	107	0	.	361	C	88879055	T	C	88879055	3	2	14	1	0	0	0	0	1	0	0	0	4998	1550	54	2	1511	2	EIF2AK3	2	88879055	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	33624874	88879055	154320318	17	1621											
PSD4	23550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113950141	113950141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PSD4	NM_012455	exon6	c.G1813A	p.E605K	AAGTCTGAAGTGG	.	33	20	47	0	.	229	A	113950141	G	A	113950141	3	1	14	1	0	0	0	0	1	0	0	0	12649	1291	45	3	1831	3	PSD4	2	113950141	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	25071086	113950141	129249232	18	1622											
GLI2	2736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121748010	121748010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GLI2	NM_005270	exon13	c.C4520A	p.A1507D	TGGAGGCCCCCCA	.	82	53	133	1	.	954	A	121748010	C	A	121748010	3	1	14	1	0	0	0	0	1	0	0	0	6438	739	26	3	4570	3	GLI2	2	121748010	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	7797869	121748010	121451363	19	1623											
NMI	9111	hgsc.bcm.edu;bcgsc.ca	37	2	152127280	152127280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NMI	NM_004688	exon8	c.A851G	p.K284R	CCATTCTTTGCCC	.	94	4	102	0	.	90	C	152127280	T	C	152127280	3	2	14	1	0	0	0	0	1	0	0	0	10497	1609	56	2	76	2	NMI	2	152127280	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	30379270	152127280	91072093	20	1624											
NMI	9111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152128184	152128184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NMI	NM_004688	exon7	c.G697T	p.V233F	CAGTAACTCTATG	.	22	14	60	0	.	90	A	152128184	C	A	152128184	3	1	14	1	0	0	0	0	1	0	0	0	10497	565	20	3	234	3	NMI	2	152128184	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	904	152128184	91071189	21	1625											
PLA2R1	22925	hgsc.bcm.edu;bcgsc.ca	37	2	160879270	160879270	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLA2R1	NM_001195641	exon7	c.T1200C	p.H400H	AGCCTCATGCCAG	.	81	4	133	0	.	93	G	160879270	A	G	160879270	2	3	14	1	0	0	0	0	0	0	0	1	12010	214	8	2		2	PLA2R1	2	160879270	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8751086	160879270	82320103	22	1626											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167297978	167297978	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SCN7A	NM_002976	exon14	c.C2085T	p.D695D	CATACAGTCCCAC	.	82	57	146	0	.	67	A	167297978	G	A	167297978	2	1	14	1	0	0	0	0	0	0	0	1	13923	1020	36	3		3	SCN7A	2	167297978	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	6418708	167297978	75901395	23	1627											
LRP2	4036	hgsc.bcm.edu;bcgsc.ca	37	2	170048456	170048456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LRP2	NM_004525	exon48	c.A8918G	p.D2973G	TCGCCATCACAGA	.	69	4	78	0	.	175	C	170048456	T	C	170048456	3	2	14	1	0	0	0	0	1	0	0	0	8956	1435	50	2	5177	2	LRP2	2	170048456	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	2750478	170048456	73150917	24	1628											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179577610	179577610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TTN	NM_001267550	exon94	c.T27142A	p.F9048I	CACTGAAAGGAGG	.	95	35	78	0	.	636	T	179577610	A	T	179577610	3	4	14	1	0	0	0	0	1	0	0	0	16732	14	1	4	77463	4	TTN	2	179577610	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	9529154	179577610	63621763	25	1629											
ALS2CR8	79800	hgsc.bcm.edu;bcgsc.ca	37	2	203834662	203834662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ALS2CR8	NM_024744	exon11	c.A974G	p.Q325R	AGGTACAGAAGTT	.	72	4	112	0	.	136	G	203834662	A	G	203834662	3	3	14	1	0	0	0	0	1	0	0	0	555	188	7	2	1004	2	ALS2CR8	2	203834662	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	24257052	203834662	39364711	26	1630											
ZDBF2	57683	hgsc.bcm.edu;bcgsc.ca	37	2	207174473	207174473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ZDBF2	NM_020923	exon5	c.T5221C	p.C1741R	GTGAGCTGTGAAC	.	72	4	91	0	.	3	C	207174473	T	C	207174473	3	2	14	1	0	0	0	0	1	0	0	0	17596	1580	55	2	5231	2	ZDBF2	2	207174473	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	3339811	207174473	36024900	27	1631											
FN1	2335	hgsc.bcm.edu;bcgsc.ca	37	2	216264012	216264012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FN1	NM_212476	exon21	c.A3316G	p.T1106A	TCCATGTGATCAC	.	84	4	78	0	.	584	C	216264012	T	C	216264012	3	2	14	1	0	0	0	0	1	0	0	0	5962	1696	59	2	4221	2	FN1	2	216264012	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	9089539	216264012	26935361	28	1632											
MOGAT1	116255	hgsc.bcm.edu;bcgsc.ca	37	2	223559205	223559205	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MOGAT1	NM_058165	exon4	c.T603C	p.T201T	GTTCACTCTGTTC	.	57	4	93	0	.	67	C	223559205	T	C	223559205	2	2	14	1	0	0	0	0	0	0	0	1	9694	1538	54	2		2	MOGAT1	2	223559205	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	7295193	223559205	19640168	29	1633											
LMCD1	29995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	8607167	8607167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LMCD1	NM_014583	exon5	c.A773T	p.Y258F	TGGTCTACTCGGA	.	125	51	90	0	.	91	T	8607167	A	T	8607167	3	4	14	1	0	0	0	0	1	0	0	0	8844	391	14	4	791	4	LMCD1	3	8607167	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		8607167	189415263	30	1634											
WNT7A	7476	hgsc.bcm.edu;bcgsc.ca	37	3	13896149	13896149	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WNT7A	NM_004625	exon3	c.T450C	p.G150G	GCAGCCACCCCAC	.	63	5	49	0	.	948	G	13896149	A	G	13896149	2	3	14	1	0	0	0	0	0	0	0	1	17391	146	6	2		2	WNT7A	3	13896149	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	5288982	13896149	184126281	31	1635											
METTL6	131965	hgsc.bcm.edu;bcgsc.ca	37	3	15467900	15467900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	METTL6	NM_152396	exon2	c.A119G	p.E40G	TGAGCCTCTTGTT	.	113	5	84	0	.	90	C	15467900	T	C	15467900	3	2	14	1	0	0	0	0	1	0	0	0	9504	1551	54	2	755	2	METTL6	3	15467900	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	1571751	15467900	182554530	32	1636											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25670532	25670532	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TOP2B	NM_001068	exon14	c.T1779A	p.I593I	CTTTACAATAGGA	.	46	23	40	0	.	273	T	25670532	A	T	25670532	2	4	14	1	0	0	0	0	0	0	0	1	16363	126	5	4		4	TOP2B	3	25670532	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	10202632	25670532	172351898	33	1637											
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43388906	43388906	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SNRK	NM_017719	exon7	c.G1155A	p.A385A	CCACGCGACTGTC	.	47	19	22	0	.	815	A	43388906	G	A	43388906	2	1	14	1	0	0	0	0	0	0	0	1	14851	1045	37	1		1	SNRK	3	43388906	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	17718374	43388906	154633524	34	1638											
CDHR4	389118	hgsc.bcm.edu;bcgsc.ca	37	3	49832387	49832387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_001007540	exon9	c.T1178C	p.V393A	TCAAGGACTCTGT	.	73	5	60	0	.	.	G	49832387	A	G	49832387	3	3	14	1	0	0	0	0	1	0	0	0	3121	275	10	2	1232	2	CDHR4	3	49832387	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	6443481	49832387	148190043	35	1639											
RPP14	11102	hgsc.bcm.edu;bcgsc.ca	37	3	58302307	58302307	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RPP14	NM_007042	exon4	c.A228G	p.R76R	CTTGAGAATATGT	.	103	5	83	0	.	90	G	58302307	A	G	58302307	2	3	14	1	0	0	0	0	0	0	0	1	13609	243	9	2		2	RPP14	3	58302307	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8469920	58302307	139720123	36	1640											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62385129	62385129	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CADPS	NM_003716	exon30	c.G4014A	p.Q1338Q	GATGCCCTGCAGT	.	119	45	132	0	.	281	T	62385129	C	T	62385129	2	4	14	1	0	0	0	0	0	0	0	1	2570	680	24	3		3	CADPS	3	62385129	Silent	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	4082822	62385129	135637301	37	1641											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64617541	64617541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ADAMTS9	NM_182920	exon15	c.G2236C	p.G746R	CGCCACCACAAAC	.	122	46	104	0	.	230	G	64617541	C	G	64617541	3	3	14	1	0	0	0	0	1	0	0	0	273	594	21	4	3671	4	ADAMTS9	3	64617541	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	2232412	64617541	133404889	38	1642											
SLC35A5	55032	hgsc.bcm.edu;bcgsc.ca	37	3	112299917	112299917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLC35A5	NM_017945	exon6	c.T953C	p.L318P	AGGGCCTTTCAGT	.	90	4	69	0	.	91	C	112299917	T	C	112299917	3	2	14	1	0	0	0	0	1	0	0	0	14574	1609	56	2	971	2	SLC35A5	3	112299917	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	47682376	112299917	85722513	39	1643											
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136085882	136085882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	STAG1	NM_005862	exon25	c.A2588G	p.H863R	CTTTTATGTAAGG	.	149	61	121	0	.	228	C	136085882	T	C	136085882	3	2	14	1	0	0	0	0	1	0	0	0	15241	1464	51	2	1228	2	STAG1	3	136085882	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	23785965	136085882	61936548	40	1644											
SLC9A9	285195	hgsc.bcm.edu;bcgsc.ca	37	3	143550901	143550901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLC9A9	NM_173653	exon2	c.A338G	p.H113R	ATGTTGTGCTGAC	.	68	4	46	0	.	229	C	143550901	T	C	143550901	3	2	14	1	0	0	0	0	1	0	0	0	14721	1696	59	2	1659	2	SLC9A9	3	143550901	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	7465019	143550901	54471529	41	1645											
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147128660	147128660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ZIC1	NM_003412	exon1	c.C761A	p.T254K	TAGTTACGCACGT	.	181	69	103	0	.	91	A	147128660	C	A	147128660	3	1	14	1	0	0	0	0	1	0	0	0	17675	536	19	1	763	1	ZIC1	3	147128660	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	3577759	147128660	50893770	42	1646											
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	159711260	159711260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	IL12A	NM_000882	exon4	c.G401C	p.R134T	ATTCCAGAGAGAC	.	112	45	115	0	.	90	C	159711260	G	C	159711260	3	2	14	1	0	0	0	0	1	0	0	0	7624	942	33	4	415	4	IL12A	3	159711260	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	12582600	159711260	38311170	43	1647											
SI	6476	hgsc.bcm.edu;bcgsc.ca	37	3	164764772	164764772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SI	NM_001041	exon16	c.A1744G	p.R582G	AGCTTCTCTTATT	.	142	6	126	0	.	104	C	164764772	T	C	164764772	3	2	14	1	0	0	0	0	1	0	0	0	14297	1559	54	2	3871	2	SI	3	164764772	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	5053512	164764772	33257658	44	1648											
PLD1	5337	hgsc.bcm.edu;bcgsc.ca	37	3	171406587	171406587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLD1	NM_002662	exon14	c.C1418T	p.S473L	GCCACCGATTGGT	.	98	4	83	0	.	660	A	171406587	G	A	171406587	3	1	14	1	0	0	0	0	1	0	0	0	12045	1059	37	1	1862	1	PLD1	3	171406587	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	6641815	171406587	26615843	45	1649											
ZNF639	51193	broad.mit.edu;bcgsc.ca	37	3	179051081	179051081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ZNF639	NM_016331	exon7	c.G329A	p.C110Y	TAATTTGTGATGA	.	124	5	104	2	.	90	A	179051081	G	A	179051081	3	1	14	1	0	0	0	0	1	0	0	0	18053	1377	48	3	343	3	ZNF639	3	179051081	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	7644494	179051081	18971349	46	1650											
VPS8	23355	hgsc.bcm.edu;bcgsc.ca	37	3	184646287	184646287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	VPS8	NM_001009921	exon31	c.A2680G	p.S894G	GAAGAGAGTCGAC	.	92	4	61	0	.	91	G	184646287	A	G	184646287	3	3	14	1	0	0	0	0	1	0	0	0	17215	304	11	2	2798	2	VPS8	3	184646287	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	5595206	184646287	13376143	47	1651											
RFC1	5981	hgsc.bcm.edu;bcgsc.ca	37	4	39352986	39352986	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RFC1	NM_002913	exon2	c.A114G	p.K38K	TATTCCTTTCTTT	.	70	4	73	0	.	230	C	39352986	T	C	39352986	2	2	14	1	0	0	0	0	0	0	0	1	13244	1606	56	2		2	RFC1	4	39352986	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		39352986	151801290	48	1652											
PROL1	58503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71275489	71275489	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PROL1	NM_021225	exon3	c.C444T	p.T148T	CACCACCGCAGAT	.	134	91	174	0	.	135	T	71275489	C	T	71275489	2	4	14	1	0	0	0	0	0	0	0	1	12554	639	23	1		1	PROL1	4	71275489	Silent	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	31922503	71275489	119878787	49	1653											
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	4	77247091	77247091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCDC158	NM_001042784	exon22	c.A3076G	p.T1026A	AACTAGTTAGGAG	.	80	4	60	0	.	96	C	77247091	T	C	77247091	3	2	14	1	0	0	0	0	1	0	0	0	2790	1725	60	2	277	2	CCDC158	4	77247091	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	5971602	77247091	113907185	50	1654											
EMCN	51705	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	101396223	101396223	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EMCN	NM_001159694	exon3	c.A231G	p.T77T	AGTAGCTGTTGAC	.	38	4	56	0	.	90	C	101396223	T	C	101396223	2	2	14	1	0	0	0	0	0	0	0	1	5086	1567	55	2		2	EMCN	4	101396223	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	24149132	101396223	89758053	51	1655											
NFKB1	4790	hgsc.bcm.edu;bcgsc.ca	37	4	103531782	103531782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NFKB1	NM_003998	exon20	c.T2278C	p.S760P	GATGACTCTTGGG	.	46	4	77	0	.	912	C	103531782	T	C	103531782	3	2	14	1	0	0	0	0	1	0	0	0	10375	1551	54	2	2352	2	NFKB1	4	103531782	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	2135559	103531782	87622494	52	1656											
BDH2	56898	hgsc.bcm.edu;bcgsc.ca	37	4	104013835	104013835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	BDH2	NM_020139	exon4	c.T170C	p.L57P	ACATCAAGGACAC	.	135	6	199	0	.	90	G	104013835	A	G	104013835	3	3	14	1	0	0	0	0	1	0	0	0	1391	72	3	2	595	2	BDH2	4	104013835	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	482053	104013835	87140441	53	1657											
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45303811	45303811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HCN1	NM_021072	exon6	c.T1508C	p.I503T	TCTCGTATGATAT	.	131	55	114	0	.	91	G	45303811	A	G	45303811	3	3	14	1	0	0	0	0	1	0	0	0	6996	449	16	2	1176	2	HCN1	5	45303811	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		45303811	135611449	54	1658											
KIF2A	3796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61669513	61669513	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KIF2A	NM_001098511	exon18	c.1761-1G>A	.	TTTATAGGGTCAA	.	85	40	63	0	.	228	A	61669513	G	A	61669513	5	1	14	1	0	0	0	0	0	0	1	0	8297	1014	35	3	1830	3	KIF2A	5	61669513	Splice_Site	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	16365702	61669513	119245747	55	1659											
HMGCR	3156	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74645959	74645959	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HMGCR	NM_001130996	exon7	c.T649G	p.S217A	TGTGTGTCCTTGG	.	200	72	156	1	.	227	G	74645959	T	G	74645959	3	3	14	1	0	0	0	0	1	0	0	0	7231	1667	58	5	671	5	HMGCR	5	74645959	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	12976446	74645959	106269301	56	1660											
AP3B1	8546	hgsc.bcm.edu;bcgsc.ca	37	5	77471657	77471657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	AP3B1	NM_003664	exon10	c.T1046C	p.V349A	TACTGCACCTCCC	.	85	4	60	0	.	90	G	77471657	A	G	77471657	3	3	14	1	0	0	0	0	1	0	0	0	744	159	6	2	2310	2	AP3B1	5	77471657	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	2825698	77471657	103443603	57	1661											
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86682657	86682657	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RASA1	NM_002890	exon23	c.A2862G	p.E954E	CATGGAAGGTGTC	.	62	4	66	0	.	661	G	86682657	A	G	86682657	2	3	14	1	0	0	0	0	0	0	0	1	13060	69	3	2		2	RASA1	5	86682657	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	9211000	86682657	94232603	58	1662											
YTHDC2	64848	hgsc.bcm.edu;bcgsc.ca	37	5	112874844	112874844	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	YTHDC2	NM_022828	exon8	c.A1176G	p.K392K	AAACAAAGAAATG	.	63	4	55	0	.	92	G	112874844	A	G	112874844	2	3	14	1	0	0	0	0	0	0	0	1	17494	69	3	2		2	YTHDC2	5	112874844	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	26192187	112874844	68040416	59	1663											
CDC23	8697	hgsc.bcm.edu;bcgsc.ca	37	5	137537070	137537070	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CDC23	NM_004661	exon5	c.A483G	p.K161K	TTGGTGTTTTTTG	.	72	4	75	0	.	226	C	137537070	T	C	137537070	2	2	14	1	0	0	0	0	0	0	0	1	3061	1722	60	2		2	CDC23	5	137537070	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	24662226	137537070	43378190	60	1664											
PCDHGA11	56105	hgsc.bcm.edu;bcgsc.ca	37	5	140803211	140803211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_032091	exon1	c.A2417G	p.D806G	AATGTGACCCGAC	.	84	5	98	0	.	.	G	140803211	A	G	140803211	3	3	14	1	0	0	0	0	1	0	0	0	11552	275	10	2	2419	2	PCDHGA11	5	140803211	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	3266141	140803211	40112049	61	1665											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778417	31778417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HSPA1L	NM_005527	exon2	c.T1333C	p.Y445H	CCTCATACACCTG	.	365	118	239	0	.	230	G	31778417	A	G	31778417	3	3	14	1	0	0	0	0	1	0	0	0	7410	391	14	2	596	2	HSPA1L	6	31778417	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		31778417	139336650	62	1666											
TREML2	79865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41162310	41162310	+	Missense_Mutation	SNP	G	G	A	rs147159415		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TREML2	NM_024807	exon3	c.C638T	p.A213V	GGAGACGCGGTCA	.	225	59	128	2	G|1.000;A|0.000	91	A	41162310	G	A	41162310	3	1	14	1	0	0	0	0	1	0	0	0	16470	1087	38	1	339	1	TREML2	6	41162310	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	9383893	41162310	129952757	63	1667											
TRERF1	55809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	42227243	42227243	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRERF1	NM_033502	exon9	c.C2103A	p.P701P	GTGGGTGGGGTCC	.	158	60	61	0	.	230	T	42227243	G	T	42227243	2	4	14	1	0	0	0	0	0	0	0	1	16472	1335	47	3		3	TRERF1	6	42227243	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	1064933	42227243	128887824	64	1668	13	2									
TRERF1	55809	broad.mit.edu;bcgsc.ca	37	6	42227244	42227244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRERF1	NM_033502	exon9	c.C2102A	p.P701H	TGGGTGGGGTCCA	.	158	59	60	1	.	230	T	42227244	G	T	42227244	3	4	14	1	0	0	0	0	1	0	0	0	16472	1232	43	3	1540	3	TRERF1	6	42227244	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	1	42227244	128887823	65	1669	13	2									
TBPL1	9519	hgsc.bcm.edu;broad.mit.edu	37	6	134305776	134305776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TBPL1	NM_004865	exon6	c.C448T	p.Q150X	ACATTACAGATTT	.	84	4	159	0	.	90	T	134305776	C	T	134305776	4	4	14	1	0	0	0	0	0	1	0	0	15642	479	17	3	466	3	TBPL1	6	134305776	Nonsense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	92078532	134305776	36809291	66	1670											
ARID1B	57492	hgsc.bcm.edu;bcgsc.ca	37	6	157256613	157256613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ARID1B	NM_020732	exon5	c.A1940G	p.E647G	CTCAGGAAGGCTA	.	73	4	99	0	.	154	G	157256613	A	G	157256613	3	3	14	1	0	0	0	0	1	0	0	0	914	246	9	2	1958	2	ARID1B	6	157256613	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	22950837	157256613	13858454	67	1671											
TBP	6908	broad.mit.edu;mdanderson.org	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	61	10	67	1	.	91	A	170871004	G	A	170871004	2	1	14	1	0	0	0	0	0	0	0	1	15641	962	34	3		3	TBP	6	170871004	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	13614391	170871004	244063	68	1672											
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5355649	5355649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TNRC18	NM_001080495	exon25	c.G6800C	p.G2267A	GTGTCTCCGTCGT	.	66	27	65	0	.	46	G	5355649	C	G	5355649	3	3	14	1	0	0	0	0	1	0	0	0	16336	855	30	4	2130	4	TNRC18	7	5355649	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10		5355649	153783014	69	1673											
FAM188B	84182	hgsc.bcm.edu;bcgsc.ca	37	7	30821784	30821784	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FAM188B	NM_032222	exon3	c.A375G	p.E125E	AGATGAAGATGCA	.	77	4	49	0	.	90	G	30821784	A	G	30821784	2	3	14	1	0	0	0	0	0	0	0	1	5515	69	3	2		2	FAM188B	7	30821784	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	25466135	30821784	128316879	70	1674											
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47873952	47873952	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PKD1L1	NM_138295	exon40	c.A6159G	p.A2053A	CTCCTGTGCGTCT	.	73	4	77	0	.	145	C	47873952	T	C	47873952	2	2	14	1	0	0	0	0	0	0	0	1	11964	1683	59	2		2	PKD1L1	7	47873952	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	17052168	47873952	111264711	71	1675											
LANCL2	55915	hgsc.bcm.edu;bcgsc.ca	37	7	55466298	55466298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LANCL2	NM_018697	exon3	c.T505C	p.C169R	AGTGACTGTGAGT	.	82	4	88	0	.	516	C	55466298	T	C	55466298	3	2	14	1	0	0	0	0	1	0	0	0	8621	1580	55	2	515	2	LANCL2	7	55466298	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	7592346	55466298	103672365	72	1676											
HGF	3082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	81358964	81358964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HGF	NM_000601	exon8	c.T997C	p.Y333H	GAGGATACTGAGA	.	83	5	60	0	.	516	G	81358964	A	G	81358964	3	3	14	1	0	0	0	0	1	0	0	0	7085	391	14	2	1233	2	HGF	7	81358964	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	25892666	81358964	77779699	73	1677											
TECPR1	25851	hgsc.bcm.edu;bcgsc.ca	37	7	97873966	97873966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TECPR1	NM_015395	exon5	c.A448G	p.K150E	TGTCTTTCGTGTA	.	75	4	56	0	.	91	C	97873966	T	C	97873966	3	2	14	1	0	0	0	0	1	0	0	0	15740	1792	62	2	3137	2	TECPR1	7	97873966	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	16515002	97873966	61264697	74	1678											
TMEM130	222865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98460878	98460878	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TMEM130	NM_152913	exon2	c.C231A	p.T77T	CAGCGGGGTGTGG	.	94	39	74	0	.	91	T	98460878	G	T	98460878	2	4	14	1	0	0	0	0	0	0	0	1	16040	1219	43	3		3	TMEM130	7	98460878	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	586912	98460878	60677785	75	1679											
ING3	54556	hgsc.bcm.edu;bcgsc.ca	37	7	120607623	120607623	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ING3	NM_019071	exon7	c.T477C	p.D159D	AACAGATCATATT	.	87	4	54	0	.	515	C	120607623	T	C	120607623	2	2	14	1	0	0	0	0	0	0	0	1	7737	1432	50	2		2	ING3	7	120607623	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	22146745	120607623	38531040	76	1680											
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	24811079	24811079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NEFL	NM_006158	exon3	c.A1400T	p.K467M	TCATCCTTGGCTT	.	30	24	52	0	.	24	A	24811079	T	A	24811079	3	1	14	1	0	0	0	0	1	0	0	0	10315	1609	56	4	240	4	NEFL	8	24811079	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		24811079	121552943	77	1681											
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73849087	73849087	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KCNB2	NM_004770	exon3	c.G1497A	p.L499L	GGCTCTGTCGGAA	.	48	12	17	0	.	158	A	73849087	G	A	73849087	2	1	14	1	0	0	0	0	0	0	0	1	8013	1364	48	3		3	KCNB2	8	73849087	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	49038008	73849087	72514935	78	1682											
RIPK2	8767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90801575	90801575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RIPK2	NM_003821	exon10	c.A1150G	p.K384E	TTTATGAAGCTGC	.	107	32	73	1	.	523	G	90801575	A	G	90801575	3	3	14	1	0	0	0	0	1	0	0	0	13381	247	9	2	1188	2	RIPK2	8	90801575	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	16952488	90801575	55562447	79	1683											
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103300480	103300480	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	UBR5	NM_015902	exon36	c.G4728A	p.E1576E	CACACCCTCCACC	.	141	35	75	0	.	761	T	103300480	C	T	103300480	2	4	14	1	0	0	0	0	0	0	0	1	16902	680	24	3		3	UBR5	8	103300480	Silent	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	12498905	103300480	43063542	80	1684											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110457871	110457871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PKHD1L1	NM_177531	exon38	c.A5773G	p.R1925G	CCAAGCAGAGGTA	.	84	30	52	0	.	145	G	110457871	A	G	110457871	3	3	14	1	0	0	0	0	1	0	0	0	11972	180	7	2	5923	2	PKHD1L1	8	110457871	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	7157391	110457871	35906151	81	1685											
TRPS1	7227	hgsc.bcm.edu;bcgsc.ca	37	8	116430680	116430680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRPS1	NM_014112	exon6	c.A2701G	p.R901G	TACGCCTCTGAAA	.	114	5	104	0	.	229	C	116430680	T	C	116430680	3	2	14	1	0	0	0	0	1	0	0	0	16590	1565	54	2	1191	2	TRPS1	8	116430680	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	5972809	116430680	29933342	82	1686											
DERL1	79139	hgsc.bcm.edu;bcgsc.ca	37	8	124037286	124037286	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DERL1	NM_001134671	exon3	c.T270C	p.A90A	ATCAAAAGCTCCT	.	61	4	37	0	.	226	G	124037286	A	G	124037286	2	3	14	1	0	0	0	0	0	0	0	1	4446	59	3	2		2	DERL1	8	124037286	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	7606606	124037286	22326736	83	1687											
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140631049	140631049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KCNK9	NM_016601	exon2	c.T577C	p.C193R	TGAAGCAGTAGTA	.	141	46	87	0	.	93	G	140631049	A	G	140631049	3	3	14	1	0	0	0	0	1	0	0	0	8072	188	7	2	551	2	KCNK9	8	140631049	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	16593763	140631049	5732973	84	1688											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	144944633	144944633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EPPK1	NM_031308	exon1	c.G2789A	p.G930E	ACAGCTCCCAGGC	.	35	12	14	0	.	25	T	144944633	C	T	144944633	3	4	14	1	0	0	0	0	1	0	0	0	5190	855	30	3	4477	3	EPPK1	8	144944633	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	4313584	144944633	1419389	85	1689											
PLAA	9373	hgsc.bcm.edu;bcgsc.ca	37	9	26905635	26905635	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLAA	NM_001031689	exon14	c.T2262C	p.S754S	ATCATCACTGATA	.	76	4	103	0	.	514	G	26905635	A	G	26905635	2	3	14	1	0	0	0	0	0	0	0	1	12011	156	6	2		2	PLAA	9	26905635	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		26905635	114307796	86	1690											
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36169807	36169807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCIN	NM_005893	exon1	c.A308T	p.E103V	TGGAGGAGCTGCT	.	126	46	104	0	.	92	T	36169807	A	T	36169807	3	4	14	1	0	0	0	0	1	0	0	0	2878	304	11	4	310	4	CCIN	9	36169807	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	9264172	36169807	105043624	87	1691											
C9orf85	138241	hgsc.bcm.edu;bcgsc.ca	37	9	74561974	74561974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	C9orf85	NM_182505	exon2	c.T155C	p.L52P	AAGTTCTTGAGTG	.	81	4	61	0	.	90	C	74561974	T	C	74561974	3	2	14	1	0	0	0	0	1	0	0	0	2501	1609	56	2	161	2	C9orf85	9	74561974	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	38392167	74561974	66651457	88	1692											
KIF27	55582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86504072	86504072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KIF27	NM_017576	exon7	c.A1906G	p.K636E	GGACCTTATCTTG	.	172	63	136	1	.	523	C	86504072	T	C	86504072	3	2	14	1	0	0	0	0	1	0	0	0	8296	1763	61	2	2347	2	KIF27	9	86504072	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	11942098	86504072	54709359	89	1693											
LCN2	3934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130911936	130911936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LCN2	NM_005564	exon1	c.C132A	p.D44E	CCAGGACAACCAA	.	75	29	68	0	.	90	A	130911936	C	A	130911936	3	1	14	1	0	0	0	0	1	0	0	0	8684	477	17	3	134	3	LCN2	9	130911936	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	44407864	130911936	10301495	90	1694											
SARDH	1757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136578161	136578161	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SARDH	NM_007101	exon9	c.A1236G	p.A412A	CTCACCTGCGCTG	.	41	15	26	0	.	90	C	136578161	T	C	136578161	2	2	14	1	0	0	0	0	0	0	0	1	13841	1594	55	2		2	SARDH	9	136578161	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	5666225	136578161	4635270	91	1695											
CCDC3	83643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13040436	13040436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCDC3	NM_031455	exon2	c.A451G	p.R151G	TCCTTCTGTTCTC	.	94	26	83	0	.	91	C	13040436	T	C	13040436	3	2	14	1	0	0	0	0	1	0	0	0	2804	1588	55	2	369	2	CCDC3	10	13040436	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		13040436	122494311	92	1696											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26442791	26442791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MYO3A	NM_017433	exon24	c.A2648T	p.H883L	TGCCACATTCTAA	.	142	6	140	0	.	1007	T	26442791	A	T	26442791	3	4	14	1	0	0	0	0	1	0	0	0	10076	217	8	4	2734	4	MYO3A	10	26442791	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	13402355	26442791	109091956	93	1697											
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu	37	10	27349321	27349321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ANKRD26	NM_014915	exon15	c.T1517C	p.V506A	TTTGGAACAGAAT	.	124	5	88	0	.	138	G	27349321	A	G	27349321	3	3	14	1	0	0	0	0	1	0	0	0	654	43	2	2	3695	2	ANKRD26	10	27349321	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	906530	27349321	108185426	94	1698											
KIAA1462	57608	hgsc.bcm.edu;ucsc.edu	37	10	30317392	30317392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KIAA1462	NM_020848	exon3	c.A1685G	p.Q562R	CCAGTTTGGAACT	.	40	4	24	0	.	72	C	30317392	T	C	30317392	3	2	14	1	0	0	0	0	1	0	0	0	8234	1812	63	2	2402	2	KIAA1462	10	30317392	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	2968071	30317392	105217355	95	1699											
SMC3	9126	hgsc.bcm.edu;bcgsc.ca	37	10	112338437	112338437	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SMC3	NM_005445	exon7	c.T402C	p.N134N	AAGCAATCCTTAT	.	55	4	51	0	.	92	C	112338437	T	C	112338437	2	2	14	1	0	0	0	0	0	0	0	1	14784	1432	50	2		2	SMC3	10	112338437	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	82021045	112338437	23196310	96	1700											
FAM160B1	57700	hgsc.bcm.edu;bcgsc.ca	37	10	116605202	116605202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FAM160B1	NM_020940	exon8	c.T1090C	p.F364L	TCCTGGTTTGATT	.	80	4	78	0	.	91	C	116605202	T	C	116605202	3	2	14	1	0	0	0	0	1	0	0	0	5470	1725	60	2	1120	2	FAM160B1	10	116605202	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	4266765	116605202	18929545	97	1701											
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124909334	124909334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HMX2	NM_005519	exon2	c.T517C	p.Y173H	AAGCGCTACCTGA	.	82	37	66	0	.	90	C	124909334	T	C	124909334	3	2	14	1	0	0	0	0	1	0	0	0	7247	1522	53	2	523	2	HMX2	10	124909334	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	8304132	124909334	10625413	98	1702											
INPP5A	3632	hgsc.bcm.edu;bcgsc.ca	37	10	134523851	134523851	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	INPP5A	NM_005539	exon8	c.538delT	p.L180fs	TTTGACTTGGTGA	.	137	55	101	0	.	229	-	134523851	T	-	134523851	7	5	14	1	0	1	0	1	0	0	0	0	7754	1606	56	0	568	0	INPP5A	10	134523851	Frame_Shift_Del	DEL	T	TCGA-BC-A3KF-01A-11D-A20W-10	9614517	134523851	1010896	99	1703											
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	992671	992671	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	AP2A2	NM_001242837	exon11	c.A1441T	p.K481X	GCGGCCAAGACTG	.	155	65	118	0	.	90	T	992671	A	T	992671	4	4	14	1	0	0	0	0	0	1	0	0	740	131	5	4	1480	4	AP2A2	11	992671	Nonsense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		992671	134013845	100	1704											
WEE1	7465	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9597791	9597791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WEE1	NM_003390	exon3	c.A797G	p.D266G	GTGAAGACATGGA	.	49	5	55	1	.	1404	G	9597791	A	G	9597791	3	3	14	1	0	0	0	0	1	0	0	0	17341	275	10	2	807	2	WEE1	11	9597791	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8605120	9597791	125408725	101	1705											
LDHA	3939	hgsc.bcm.edu;bcgsc.ca	37	11	18425285	18425285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LDHA	NM_001165414	exon6	c.A724G	p.T242A	CTGAAGACTCTGC	.	68	5	64	0	.	650	G	18425285	A	G	18425285	3	3	14	1	0	0	0	0	1	0	0	0	8698	275	10	2	746	2	LDHA	11	18425285	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8827494	18425285	116581231	102	1706											
HIPK3	10114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33308924	33308924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HIPK3	NM_001048200	exon2	c.G964T	p.D322Y	CATGCTGATCTCA	.	98	43	113	1	.	336	T	33308924	G	T	33308924	3	4	14	1	0	0	0	0	1	0	0	0	7118	1290	45	3	966	3	HIPK3	11	33308924	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	14883639	33308924	101697592	103	1707											
OR5L1	219437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55579735	55579736	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	.	.	.	p.G265F	AGTTCAGGCAATA	.	82	34	59	1	.	.	TT	55579736	GG	TT	55579735	3	4	14	1	0	0	0	0	1	0	0	0	11170	1000	35	3	795	3	OR5L1	11	55579735	Missense_Mutation	DNP	GG	TCGA-BC-A3KF-01A-11D-A20W-10	22270811	55579735	79426781	104	1708											
INCENP	3619	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	61906200	61906200	+	Silent	SNP	A	A	G	rs150865728		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	INCENP	NM_001040694	exon6	c.A1131G	p.E377E	GAAGGAACCCCCC	.	40	4	34	0	A|1.000;G|0.000	227	G	61906200	A	G	61906200	2	3	14	1	0	0	0	0	0	0	0	1	7733	40	2	2		2	INCENP	11	61906200	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	6326465	61906200	73100316	105	1709											
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67352159	67352159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GSTP1	NM_000852	exon4	c.T148C	p.Y50H	CAGCTATACGGGC	.	116	48	92	0	.	91	C	67352159	T	C	67352159	3	2	14	1	0	0	0	0	1	0	0	0	6844	1406	49	2	162	2	GSTP1	11	67352159	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	5445959	67352159	67654357	106	1710											
CHKA	1119	hgsc.bcm.edu;bcgsc.ca	37	11	67821492	67821492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CHKA	NM_001277	exon12	c.A1337G	p.D446G	TAGGCATCAAACC	.	82	4	69	0	.	91	C	67821492	T	C	67821492	3	2	14	1	0	0	0	0	1	0	0	0	3347	1435	50	2	40	2	CHKA	11	67821492	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	469333	67821492	67185024	107	1711											
KRTAP5-10	387273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71277087	71277087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KRTAP5-10	NM_001012710	exon1	c.T454G	p.S152A	TGCTCCTCAGGCT	.	145	51	157	0	.	91	G	71277087	T	G	71277087	3	3	14	1	0	0	0	0	1	0	0	0	8559	1551	54	5	456	5	KRTAP5-10	11	71277087	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	3455595	71277087	63729429	108	1712											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	82872485	82872485	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PCF11	NM_015885	exon2	c.G309A	p.V103V	TTGTGTGTTTGAA	.	87	5	66	0	.	23	A	82872485	G	A	82872485	2	1	14	1	0	0	0	0	0	0	0	1	11573	1364	48	3		3	PCF11	11	82872485	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	11595398	82872485	52134031	109	1713											
HSPB2	3316	broad.mit.edu;bcgsc.ca	37	11	111784335	111784335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HSPB2	NM_001541	exon2	c.A265G	p.T89A	GAGGTGACTGTGA	.	51	4	79	0	.	659	G	111784335	A	G	111784335	3	3	14	1	0	0	0	0	1	0	0	0	7420	275	10	2	271	2	HSPB2	11	111784335	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	28911850	111784335	23222181	110	1714											
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125474114	125474114	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	STT3A	NM_152713	exon6	c.A480T	p.R160R	CTCCCGATCTGTG	.	92	68	144	1	.	90	T	125474114	A	T	125474114	2	4	14	1	0	0	0	0	0	0	0	1	15332	320	12	4		4	STT3A	11	125474114	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	13689779	125474114	9532402	111	1715											
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14840921	14840921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GUCY2C	NM_004963	exon2	c.C294A	p.S98R	ACAGGTGCTACTC	.	34	25	53	0	.	338	T	14840921	G	T	14840921	3	4	14	1	0	0	0	0	1	0	0	0	6896	1310	46	3	3031	3	GUCY2C	12	14840921	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10		14840921	119010974	112	1716											
SLCO1A2	6579	hgsc.bcm.edu;bcgsc.ca	37	12	21450445	21450445	+	Missense_Mutation	SNP	A	A	G	rs11568579	byfrequency	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLCO1A2	NM_134431	exon10	c.T968C	p.L323P	CTTACAAGTATGA	.	29	4	53	0	A|1.000;G|0.000	157	G	21450445	A	G	21450445	3	3	14	1	0	0	0	0	1	0	0	0	14722	72	3	2	1072	2	SLCO1A2	12	21450445	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	6609524	21450445	112401450	113	1717											
TM7SF3	51768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27128524	27128524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TM7SF3	NM_016551	exon11	c.C1355T	p.S452F	CTTGTGGACCAGT	.	101	73	127	0	.	92	A	27128524	G	A	27128524	3	1	14	1	0	0	0	0	1	0	0	0	15972	1174	41	3	365	3	TM7SF3	12	27128524	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	5678079	27128524	106723371	114	1718											
ARID2	196528	hgsc.bcm.edu;bcgsc.ca	37	12	46231166	46231166	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ARID2	NM_152641	exon9	c.T1086C	p.C362C	AAAATGTCTAATG	.	84	4	73	0	.	100	C	46231166	T	C	46231166	2	2	14	1	0	0	0	0	0	0	0	1	915	1673	58	2		2	ARID2	12	46231166	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	19102642	46231166	87620729	115	1719											
BIN2	51411	hgsc.bcm.edu;bcgsc.ca	37	12	51693495	51693495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	BIN2	NM_016293	exon6	c.A412G	p.R138G	CAATTCTCTCCTG	.	71	4	39	0	.	91	C	51693495	T	C	51693495	3	2	14	1	0	0	0	0	1	0	0	0	1433	1559	54	2	1317	2	BIN2	12	51693495	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	5462329	51693495	82158400	116	1720											
KSR2	283455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117922348	117922348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KSR2	NM_173598	exon16	c.G2236C	p.G746R	GGTAGCCCATGCC	.	123	62	80	1	.	1449	G	117922348	C	G	117922348	3	3	14	1	0	0	0	0	1	0	0	0	8582	623	22	4	549	4	KSR2	12	117922348	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	66228853	117922348	15929547	117	1721											
TCTN2	79867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124158356	124158356	+	Silent	SNP	A	A	T	rs111689585	alternate_allele	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TCTN2	NM_024809	exon4	c.A462T	p.S154S	TGCCTCAGGCAAG	.	216	118	143	0	A|0.500;G|0.500	91	T	124158356	A	T	124158356	2	4	14	1	0	0	0	0	0	0	0	1	15720	202	7	4		4	TCTN2	12	124158356	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	6236008	124158356	9693539	118	1722											
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125451369	125451369	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DHX37	NM_032656	exon12	c.A1560T	p.S520S	GGCCCTTGACTTC	.	168	69	155	0	.	227	A	125451369	T	A	125451369	2	1	14	1	0	0	0	0	0	0	0	1	4510	1799	63	4		4	DHX37	12	125451369	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	1293013	125451369	8400526	119	1723											
CCDC122	160857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	44433973	44433973	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCDC122	NM_144974	exon5	c.A390G	p.A130A	TATTTTTGCATAA	.	49	35	63	0	.	90	C	44433973	T	C	44433973	2	2	14	1	0	0	0	0	0	0	0	1	2758	1799	63	2		2	CCDC122	13	44433973	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		44433973	70735905	120	1724											
RCBTB2	1102	hgsc.bcm.edu;bcgsc.ca	37	13	49073817	49073817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RCBTB2	NM_001268	exon13	c.C1324T	p.R442W	AGGCCCGGTAAAC	.	67	5	81	0	.	418	A	49073817	G	A	49073817	3	1	14	1	0	0	0	0	1	0	0	0	13172	1115	39	1	343	1	RCBTB2	13	49073817	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	4639844	49073817	66096061	121	1725											
CAB39L	81617	hgsc.bcm.edu;bcgsc.ca	37	13	49913821	49913821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CAB39L	NM_030925	exon7	c.T682C	p.S228P	TTAAAGACTGTCT	.	92	4	126	0	.	90	G	49913821	A	G	49913821	3	3	14	1	0	0	0	0	1	0	0	0	2526	275	10	2	343	2	CAB39L	13	49913821	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	840004	49913821	65256057	122	1726											
ATP7B	540	hgsc.bcm.edu;bcgsc.ca	37	13	52532539	52532539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ATP7B	NM_000053	exon8	c.A2263G	p.K755E	CCGCCTTCTCAGC	.	88	5	99	0	.	92	C	52532539	T	C	52532539	3	2	14	1	0	0	0	0	1	0	0	0	1191	1792	62	2	2190	2	ATP7B	13	52532539	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	2618718	52532539	62637339	123	1727											
PCDH9	5101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	66879031	66879031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PCDH9	NM_203487	exon5	c.C3470T	p.P1157L	GAGAGAGGAGATT	.	86	51	97	1	.	96	A	66879031	G	A	66879031	3	1	14	1	0	0	0	0	1	0	0	0	11518	1000	35	3	247	3	PCDH9	13	66879031	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	14346492	66879031	48290847	124	1728											
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	86369191	86369191	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLITRK6	NM_032229	exon2	c.1453delA	p.T485fs	CCTTAGTTAGAGG	.	64	53	60	0	.	137	-	86369191	T	-	86369191	7	5	14	1	0	1	0	1	0	0	0	0	14747	1725	60	0	1076	0	SLITRK6	13	86369191	Frame_Shift_Del	DEL	T	TCGA-BC-A3KF-01A-11D-A20W-10	19490160	86369191	28800687	125	1729											
BAZ1A	11177	hgsc.bcm.edu;bcgsc.ca	37	14	35272095	35272095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	BAZ1A	NM_182648	exon7	c.A826G	p.R276G	TCCCTCTTCGTCT	.	68	4	39	0	.	291	C	35272095	T	C	35272095	3	2	14	1	0	0	0	0	1	0	0	0	1329	1617	56	2	3928	2	BAZ1A	14	35272095	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		35272095	72077445	126	1730											
PPP2R3C	55012	hgsc.bcm.edu;bcgsc.ca	37	14	35585916	35585916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PPP2R3C	NM_017917	exon2	c.A86G	p.D29G	TCTTCATCTTTTA	.	55	4	39	0	.	227	C	35585916	T	C	35585916	3	2	14	1	0	0	0	0	1	0	0	0	12390	1435	50	2	1323	2	PPP2R3C	14	35585916	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	313821	35585916	71763624	127	1731											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	38725216	38725216	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CLEC14A	NM_175060	exon1	c.G12T	p.A4A	GGCGAACGCCGGC	.	85	46	38	0	.	94	A	38725216	C	A	38725216	2	1	14	1	0	0	0	0	0	0	0	1	3499	523	19	1		1	CLEC14A	14	38725216	Silent	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	3139300	38725216	68624324	128	1732											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45623916	45623916	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FANCM	NM_020937	exon7	c.A1200G	p.K400K	GTCAAAAAATGAA	.	75	23	68	0	.	569	G	45623916	A	G	45623916	2	3	14	1	0	0	0	0	0	0	0	1	5671	11	1	2		2	FANCM	14	45623916	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	6898700	45623916	61725624	129	1733											
WDHD1	11169	hgsc.bcm.edu;bcgsc.ca	37	14	55408356	55408356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WDHD1	NM_007086	exon26	c.A3242G	p.K1081R	CGCTTCTTTGCTT	.	82	4	138	0	.	91	C	55408356	T	C	55408356	3	2	14	1	0	0	0	0	1	0	0	0	17268	1609	56	2	151	2	WDHD1	14	55408356	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	9784440	55408356	51941184	130	1734											
C14orf166B	145497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	77292857	77292857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_194287	exon1	c.T19C	p.S7P	TTCCCATCAAAGC	.	73	5	83	0	.	.	C	77292857	T	C	77292857	3	2	14	1	0	0	0	0	1	0	0	0	1757	1435	50	2	21	2	C14orf166B	14	77292857	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	21884501	77292857	30056683	131	1735											
WDR20	91833	hgsc.bcm.edu;bcgsc.ca	37	14	102676047	102676047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WDR20	NM_001242417	exon4	c.T1633C	p.C545R	CCCCTGTGTCCTC	.	61	4	103	0	.	90	C	102676047	T	C	102676047	3	2	14	1	0	0	0	0	1	0	0	0	17277	1696	59	2	1567	2	WDR20	14	102676047	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	25383190	102676047	4673493	132	1736											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31355371	31355371	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRPM1	NM_001252020	exon7	c.A966G	p.G322G	GGCACGTCCGCTG	.	94	36	61	0	.	94	C	31355371	T	C	31355371	2	2	14	1	0	0	0	0	0	0	0	1	16582	1654	58	2		2	TRPM1	15	31355371	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		31355371	71176021	133	1737											
RYR3	6263	hgsc.bcm.edu;bcgsc.ca	37	15	33993260	33993260	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RYR3	NM_001243996	exon42	c.A6462G	p.L2154L	GAGCTTAGAGGAA	.	72	4	60	0	.	520	G	33993260	A	G	33993260	2	3	14	1	0	0	0	0	0	0	0	1	13770	417	15	2		2	RYR3	15	33993260	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	2637889	33993260	68538132	134	1738											
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35222481	35222481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	AQR	NM_014691	exon12	c.A992T	p.Y331F	CTATCATAGTGAA	.	35	10	27	0	.	135	A	35222481	T	A	35222481	3	1	14	1	0	0	0	0	1	0	0	0	835	1406	49	4	3561	4	AQR	15	35222481	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	1229221	35222481	67308911	135	1739											
PLCB2	5330	hgsc.bcm.edu;bcgsc.ca	37	15	40584596	40584596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLCB2	NM_004573	exon22	c.T2375C	p.M792T	GCAGGCATGGTGA	.	80	4	64	0	.	275	G	40584596	A	G	40584596	3	3	14	1	0	0	0	0	1	0	0	0	12028	217	8	2	1226	2	PLCB2	15	40584596	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	5362115	40584596	61946796	136	1740											
MGA	23269	hgsc.bcm.edu;bcgsc.ca	37	15	42003112	42003112	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MGA	NM_001080541	exon8	c.T2649C	p.S883S	TACCTCTTATTCT	.	65	4	61	0	.	522	C	42003112	T	C	42003112	2	2	14	1	0	0	0	0	0	0	0	1	9540	1596	56	2		2	MGA	15	42003112	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	1418516	42003112	60528280	137	1741											
DAPK2	23604	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	64275877	64275877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DAPK2	NM_014326	exon3	c.C169T	p.R57W	TCTGCCGCTTCTT	.	108	20	39	0	.	333	A	64275877	G	A	64275877	3	1	14	1	0	0	0	0	1	0	0	0	4236	1086	38	1	983	1	DAPK2	15	64275877	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	22272765	64275877	38255515	138	1742											
C16orf13	84326	ucsc.edu;bcgsc.ca	37	16	684744	684744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	C16orf13	NM_032366	exon5	c.C542T	p.A181V	CCACTGGCCTTTC	.	38	4	62	0	.	22	A	684744	G	A	684744	3	1	14	1	0	0	0	0	1	0	0	0	1811	1203	42	3	151	3	C16orf13	16	684744	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10		684744	89670009	139	1743											
WDR90	197335	hgsc.bcm.edu;bcgsc.ca	37	16	699822	699822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WDR90	NM_145294	exon2	c.T70C	p.S24P	AAGCGCTCCGCCA	.	37	4	33	0	.	92	C	699822	T	C	699822	3	2	14	1	0	0	0	0	1	0	0	0	17334	1551	54	2	76	2	WDR90	16	699822	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	15078	699822	89654931	140	1744											
TSC2	7249	broad.mit.edu;bcgsc.ca	37	16	2136835	2136854	+	Frame_Shift_Del	DEL	ATGACTCCGGTGAGGACTTC	ATGACTCCGGTGAGGACTTC	-	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	ATGACTCCGGTGAGGACTTC	ATGACTCCGGTGAGGACTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	TSC2_ENST00000219476,NS,carcinoid-endocrine_tumour,0	TSC2	NM_000548	exon38	c.4952_4971del	p.1651_1657del	TCTACAATGACTC	.	24	8	65	0	.	1908	-	2136854	ATGACTCCGGTGAGGACTTC	-	2136835	7	5	14	1	0	1	0	1	0	0	0	0	16603	101	4	0	5098	0	TSC2	16	2136835	Frame_Shift_Del	DEL	ATGACTCCGGTGAGGACTTC	TCGA-BC-A3KF-01A-11D-A20W-10	1437013	2136835	88217918	141	1745											
CCNF	899	hgsc.bcm.edu;bcgsc.ca	37	16	2487180	2487180	+	Missense_Mutation	SNP	C	C	T	rs138913390		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCNF	NM_001761	exon5	c.C397T	p.R133C	GCCTCTCGCTTCT	.	58	4	47	0	C|1.000;T|0.000	658	T	2487180	C	T	2487180	3	4	14	1	0	0	0	0	1	0	0	0	2922	884	31	1	415	1	CCNF	16	2487180	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	350345	2487180	87867573	142	1746											
SRRM2	23524	ucsc.edu;bcgsc.ca	37	16	2811772	2811772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SRRM2	NM_016333	exon11	c.T1243C	p.S415P	CCCCAGTCTTCTT	.	41	6	74	0	.	93	C	2811772	T	C	2811772	3	2	14	1	0	0	0	0	1	0	0	0	15168	1667	58	2	1281	2	SRRM2	16	2811772	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	324592	2811772	87542981	143	1747											
ERCC4	2072	hgsc.bcm.edu;bcgsc.ca	37	16	14024746	14024746	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ERCC4	NM_005236	exon5	c.A972G	p.S324S	GAATTCAGGTGGG	.	54	4	66	0	.	665	G	14024746	A	G	14024746	2	3	14	1	0	0	0	0	0	0	0	1	5215	202	7	2		2	ERCC4	16	14024746	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	11212974	14024746	76330007	144	1748											
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23117594	23117594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	USP31	NM_020718	exon4	c.A893G	p.Q298R	TTGCTCTGTTTCT	.	113	5	92	0	.	663	C	23117594	T	C	23117594	3	2	14	1	0	0	0	0	1	0	0	0	17059	1580	55	2	3217	2	USP31	16	23117594	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	9092848	23117594	67237159	145	1749											
ITGAL	3683	hgsc.bcm.edu;bcgsc.ca	37	16	30507878	30507878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ITGAL	NM_002209	exon15	c.T1823C	p.I608T	AGATGATCGTGCT	.	119	6	81	0	.	994	C	30507878	T	C	30507878	3	2	14	1	0	0	0	0	1	0	0	0	7886	1435	50	2	1881	2	ITGAL	16	30507878	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	7390284	30507878	59846875	146	1750											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67916365	67916365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EDC4	NM_014329	exon25	c.G3310A	p.D1104N	GCTGCAGACACAT	.	89	33	70	0	.	92	A	67916365	G	A	67916365	3	1	14	1	0	0	0	0	1	0	0	0	4908	942	33	3	3408	3	EDC4	16	67916365	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	37408487	67916365	22438388	147	1751											
IL34	146433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70688456	70688456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	IL34	NM_152456	exon3	c.T44A	p.L15H	TCTTCCTTGGCGT	.	190	68	165	0	.	91	A	70688456	T	A	70688456	3	1	14	1	0	0	0	0	1	0	0	0	7694	1609	56	4	50	4	IL34	16	70688456	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	2772091	70688456	19666297	148	1752											
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33807038	33807038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLFN12L	NM_001195790	exon2	c.G191T	p.R64L	ACAGCTCGTGAGA	.	163	71	144	0	.	23	A	33807038	C	A	33807038	3	1	14	1	0	0	0	0	1	0	0	0	14735	884	31	1	1587	1	SLFN12L	17	33807038	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10		33807038	47388172	149	1753											
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	40342899	40342899	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GHDC	NM_001142623	exon7	c.C1105T	p.R369X	CCACTCGCACCAC	.	55	25	59	0	.	90	A	40342899	G	A	40342899	4	1	14	1	0	0	0	0	0	1	0	0	6369	1095	38	1	592	1	GHDC	17	40342899	Nonsense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	6535861	40342899	40852311	150	1754											
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40500452	40500452	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	STAT3	NM_003150	exon2	c.T83A	p.M28K	AGCTCCATTGGGA	.	110	50	106	0	.	1271	T	40500452	A	T	40500452	3	4	14	1	0	0	0	0	1	0	0	0	15265	217	8	4	2321	4	STAT3	17	40500452	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	157553	40500452	40694758	151	1755											
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66879991	66879991	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ABCA8	NM_007168	exon27	c.T3528C	p.T1176T	TCGAAGAGTAAAA	.	111	5	104	0	.	93	G	66879991	A	G	66879991	2	3	14	1	0	0	0	0	0	0	0	1	38	291	11	2		2	ABCA8	17	66879991	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	26379539	66879991	14315219	152	1756											
SOX9	6662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	70120374	70120374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SOX9	NM_000346	exon3	c.G1376T	p.G459V	GCCAGGGCACCGG	.	77	33	67	0	.	514	T	70120374	G	T	70120374	3	4	14	1	0	0	0	0	1	0	0	0	14958	1203	42	3	1386	3	SOX9	17	70120374	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	3240383	70120374	11074836	153	1757											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78336932	78336932	+	Missense_Mutation	SNP	A	A	G	rs144458310	byfrequency	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RNF213	NM_001256071	exon40	c.A11386G	p.R3796G	TGCACTAGGAAAC	.	74	23	63	0	A|1.000;G|0.000	577	G	78336932	A	G	78336932	3	3	14	1	0	0	0	0	1	0	0	0	13477	411	15	2	11859	2	RNF213	17	78336932	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8216558	78336932	2858278	154	1758											
ANKRD12	23253	hgsc.bcm.edu;bcgsc.ca	37	18	9255794	9255794	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ANKRD12	NM_015208	exon9	c.A2529G	p.K843K	TGAAAAAGAAAAG	.	86	4	66	0	.	92	G	9255794	A	G	9255794	2	3	14	1	0	0	0	0	0	0	0	1	640	69	3	2		2	ANKRD12	18	9255794	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		9255794	68821454	155	1759											
PSMG2	56984	hgsc.bcm.edu;bcgsc.ca	37	18	12718587	12718587	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PSMG2	NM_020232	exon4	c.T360C	p.V120V	CATTGTTCTTTCA	.	84	4	75	0	.	68	C	12718587	T	C	12718587	2	2	14	1	0	0	0	0	0	0	0	1	12712	1770	62	2		2	PSMG2	18	12718587	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	3462793	12718587	65358661	156	1760											
PHLPP1	23239	hgsc.bcm.edu;bcgsc.ca	37	18	60563017	60563017	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_194449	exon6	c.A2217G	p.L739L	TAGCTTACAGACA	.	56	4	63	0	.	.	G	60563017	A	G	60563017	2	3	14	1	0	0	0	0	0	0	0	1	11854	388	14	2		2	PHLPP1	18	60563017	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	47844430	60563017	17514231	157	1761											
SERPINB12	89777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61232745	61232745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SERPINB12	NM_080474	exon6	c.T713C	p.V238A	AGGAGGTGAAGGC	.	62	6	53	0	.	227	C	61232745	T	C	61232745	3	2	14	1	0	0	0	0	1	0	0	0	14099	1696	59	2	735	2	SERPINB12	18	61232745	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	669728	61232745	16844503	158	1762											
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10112330	10112330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	COL5A3	NM_015719	exon8	c.A980G	p.D327G	CCACTGTCAGGGT	.	99	39	71	0	.	99	C	10112330	T	C	10112330	3	2	14	1	0	0	0	0	1	0	0	0	3698	1667	58	2	4497	2	COL5A3	19	10112330	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		10112330	49016653	159	1763											
PDE4C	5143	hgsc.bcm.edu;bcgsc.ca	37	19	18333125	18333125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PDE4C	NM_000923	exon3	c.T251C	p.L84P	TTTTCCAGGTCAA	.	66	4	38	0	.	94	G	18333125	A	G	18333125	3	3	14	1	0	0	0	0	1	0	0	0	11641	188	7	2	1943	2	PDE4C	19	18333125	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8220795	18333125	40795858	160	1764											
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40486011	40486011	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PSMC4	NM_006503	exon8	c.G876A	p.L292L	GGAGCTGCTGAAT	.	259	108	224	0	.	91	A	40486011	G	A	40486011	2	1	14	1	0	0	0	0	0	0	0	1	12689	1306	46	3		3	PSMC4	19	40486011	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	22152886	40486011	18642972	161	1765											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50100971	50100971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PRR12	NM_020719	exon4	c.A3379T	p.S1127C	GTCTCCAGCTGCC	.	109	43	58	0	.	70	T	50100971	A	T	50100971	3	4	14	1	0	0	0	0	1	0	0	0	12584	188	7	4	3393	4	PRR12	19	50100971	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	9614960	50100971	9028012	162	1766											
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52130941	52130941	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SIGLEC5	NM_003830	exon6	c.A1056G	p.R352R	GGAGCATCTGCAG	.	34	13	29	0	.	92	C	52130941	T	C	52130941	2	2	14	1	0	0	0	0	0	0	0	1	14311	1432	50	2		2	SIGLEC5	19	52130941	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	2029970	52130941	6998042	163	1767											
TMEM150B	284417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55832397	55832397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TMEM150B	NM_001085488	exon3	c.G8T	p.G3V	AGGTAGCCCCACA	.	163	78	126	0	.	68	A	55832397	C	A	55832397	3	1	14	1	0	0	0	0	1	0	0	0	16065	739	26	3	717	3	TMEM150B	19	55832397	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	3701456	55832397	3296586	164	1768											
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59061183	59061183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRIM28	NM_005762	exon14	c.G2062T	p.D688Y	GGTGCAGACAGCA	.	39	33	75	0	.	870	T	59061183	G	T	59061183	3	4	14	1	0	0	0	0	1	0	0	0	16499	942	33	3	2116	3	TRIM28	19	59061183	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	3228786	59061183	67800	165	1769											
NSFL1C	55968	hgsc.bcm.edu;bcgsc.ca	37	20	1434946	1434946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NSFL1C	NM_016143	exon5	c.T449C	p.F150S	CCTGCAAATGGCT	.	79	5	56	0	.	90	G	1434946	A	G	1434946	3	3	14	1	0	0	0	0	1	0	0	0	10672	14	1	2	683	2	NSFL1C	20	1434946	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10		1434946	61590574	166	1770											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3007357	3007357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PTPRA	NM_002836	exon22	c.A1639T	p.N547Y	ATCCAGAATGACA	.	107	49	68	0	.	227	T	3007357	A	T	3007357	3	4	14	1	0	0	0	0	1	0	0	0	12795	246	9	4	1697	4	PTPRA	20	3007357	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	1572411	3007357	60018163	167	1771											
ABHD12	26090	hgsc.bcm.edu;bcgsc.ca	37	20	25300910	25300910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ABHD12	NM_001042472	exon4	c.A467G	p.D156G	ATCTGGTCTTTGC	.	81	4	64	0	.	91	C	25300910	T	C	25300910	3	2	14	1	0	0	0	0	1	0	0	0	76	1667	58	2	831	2	ABHD12	20	25300910	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	22293553	25300910	37724610	168	1772											
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33575459	33575459	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MYH7B	NM_020884	exon17	c.A1373T	p.K458M	TGACCAAGGGCCA	.	141	32	70	0	.	136	T	33575459	A	T	33575459	3	4	14	1	0	0	0	0	1	0	0	0	10040	72	3	4	1431	4	MYH7B	20	33575459	Missense_Mutation	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	8274549	33575459	29450061	169	1773											
USP25	29761	hgsc.bcm.edu;broad.mit.edu	37	21	17163836	17163836	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	USP25	NM_013396	exon5	c.C408T	p.S136S	AGCCAGCATAGCA	.	60	4	62	0	.	663	T	17163836	C	T	17163836	2	4	14	1	0	0	0	0	0	0	0	1	17053	709	25	3		3	USP25	21	17163836	Silent	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10		17163836	30966059	170	1774											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47783761	47783761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PCNT	NM_006031	exon14	c.C2521T	p.R841W	TGTGGGCGGGAGC	.	82	41	74	0	.	141	T	47783761	C	T	47783761	3	4	14	1	0	0	0	0	1	0	0	0	11590	759	27	1	2575	1	PCNT	21	47783761	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	30619925	47783761	346134	171	1775											
UBE2L3	7332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21922044	21922044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	UBE2L3	NM_003347	exon1	c.G11T	p.S4I	CGGCCAGCAGGAG	.	153	57	141	0	.	414	T	21922044	G	T	21922044	3	4	14	1	0	0	0	0	1	0	0	0	16860	971	34	3	13	3	UBE2L3	22	21922044	Missense_Mutation	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10		21922044	29382522	172	1776											
SRRD	402055	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	26887637	26887637	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SRRD	NM_001013694	exon7	c.G1019A	p.X340X	CTGACTGAACTCG	.	15	11	13	0	.	22	A	26887637	G	A	26887637	2	1	14	1	0	0	0	0	0	0	0	1	15166	1285	45	3		3	SRRD	22	26887637	Silent	SNP	G	TCGA-BC-A3KF-01A-11D-A20W-10	4965593	26887637	24416929	173	1777											
SMTN	6525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31485773	31485773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SMTN	NM_001207018	exon6	c.T728G	p.V243G	CCACAGTGACACT	.	91	31	64	1	.	154	G	31485773	T	G	31485773	3	3	14	1	0	0	0	0	1	0	0	0	14814	1696	59	5	582	5	SMTN	22	31485773	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	4598136	31485773	19818793	174	1778											
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44892949	44892949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LDOC1L	NM_032287	exon2	c.G488A	p.R163H	TTGTTGCGCAAGG	.	98	36	78	0	.	69	T	44892949	C	T	44892949	3	4	14	1	0	0	0	0	1	0	0	0	8710	768	27	1	235	1	LDOC1L	22	44892949	Missense_Mutation	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	13407176	44892949	6411617	175	1779											
YY2	404281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21875262	21875262	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	YY2	NM_206923	exon1	c.T660A	p.P220P	ACTTCCTCCTGGG	.	110	46	87	0	.	193	A	21875262	T	A	21875262	2	1	14	1	0	0	0	0	0	0	0	1	17506	1538	54	4		4	YY2	23	21875262	Silent	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10		21875262	133395298	176	1780											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73814206	73814206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RLIM	NM_183353	exon4	c.A188T	p.E63V	AGCAACTCTTCCT	.	108	34	94	0	.	228	A	73814206	T	A	73814206	3	1	14	1	0	0	0	0	1	0	0	0	13390	1551	54	4	1694	4	RLIM	23	73814206	Missense_Mutation	SNP	T	TCGA-BC-A3KF-01A-11D-A20W-10	51938944	73814206	81456354	177	1781											
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76856034	76856034	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ATRX	NM_000489	exon24	c.5567-1G>A	.	CCACACCTGATCA	.	104	47	92	0	.	248	T	76856034	C	T	76856034	5	4	14	1	0	0	0	0	0	0	1	0	1208	695	24	3	1964	3	ATRX	23	76856034	Splice_Site	SNP	C	TCGA-BC-A3KF-01A-11D-A20W-10	3041828	76856034	78414526	178	1782											
GPR119	139760	hgsc.bcm.edu;bcgsc.ca	37	X	129518585	129518585	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GPR119	NM_178471	exon1	c.T837C	p.Y279Y	ATAGGCATAGATG	.	95	6	133	0	.	132	G	129518585	A	G	129518585	2	3	14	1	0	0	0	0	0	0	0	1	6634	224	8	2		2	GPR119	23	129518585	Silent	SNP	A	TCGA-BC-A3KF-01A-11D-A20W-10	52662551	129518585	25751975	179	1783											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16255127	16255127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SPEN	NM_015001	exon11	c.G2392C	p.D798H	ACTTTTGATCCGG	.	43	16	45	0	.	298	C	16255127	G	C	16255127	3	2	15	1	0	0	0	0	1	0	0	0	15037	1290	45	4	2434	4	SPEN	1	16255127	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		16255127	232995494	1	1784											
HSPG2	3339	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	22183660	22183660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HSPG2	NM_005529	exon44	c.G5423A	p.R1808H	TGCAGGCGGGTCC	.	202	88	235	0	.	141	T	22183660	C	T	22183660	3	4	15	1	0	0	0	0	1	0	0	0	7430	768	27	1	7968	1	HSPG2	1	22183660	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	5928533	22183660	227066961	2	1785											
GJB4	127534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35227120	35227120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GJB4	NM_153212	exon2	c.C265A	p.L89M	CCCTCACTGCTCG	.	105	50	123	0	.	92	A	35227120	C	A	35227120	3	1	15	1	0	0	0	0	1	0	0	0	6410	564	20	3	267	3	GJB4	1	35227120	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	13043460	35227120	214023501	3	1786											
TTC22	55001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55248004	55248004	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TTC22	NM_001114108	exon6	c.C1167T	p.I389I	CTGGCCGATGTCC	.	68	24	42	0	.	90	A	55248004	G	A	55248004	2	1	15	1	0	0	0	0	0	0	0	1	16686	1048	37	1		1	TTC22	1	55248004	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	20020884	55248004	194002617	4	1787											
RAVER2	55225	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65243382	65243382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RAVER2	NM_018211	exon3	c.A393C	p.K131N	AGGAAAAGACTTA	.	163	79	170	0	.	135	C	65243382	A	C	65243382	3	2	15	1	0	0	0	0	1	0	0	0	13095	69	3	5	403	5	RAVER2	1	65243382	Missense_Mutation	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	9995378	65243382	184007239	5	1788											
USP33	23032	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78183652	78183652	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	USP33	NM_015017	exon18	c.A1911G	p.L637L	GCCTTCTAGCGGA	.	175	84	196	0	.	659	C	78183652	T	C	78183652	2	2	15	1	0	0	0	0	0	0	0	1	17061	1509	53	2		2	USP33	1	78183652	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	12940270	78183652	171066969	6	1789											
MTF2	22823	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	93545089	93545089	+	Splice_Site	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MTF2	NM_001164392	exon1	c.5+1G>T	.	AATGAGGTGAGAG	.	104	53	127	0	.	92	T	93545089	G	T	93545089	5	4	15	1	0	0	0	0	0	0	1	0	9923	1275	44	3	8	3	MTF2	1	93545089	Splice_Site	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	15361437	93545089	155705532	7	1790											
TNR	7143	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175360557	175360557	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TNR	NM_003285	exon7	c.G1374T	p.V458V	AGCAATCACTCCC	.	184	135	92	1	.	324	A	175360557	C	A	175360557	2	1	15	1	0	0	0	0	0	0	0	1	16335	813	29	3		3	TNR	1	175360557	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	81815468	175360557	73890064	8	1791											
NCF2	4688	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183532683	183532683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NCF2	NM_001127651	exon13	c.A1064C	p.K355T	TGCACCTTGAGTG	.	301	57	135	0	.	93	G	183532683	T	G	183532683	3	3	15	1	0	0	0	0	1	0	0	0	10217	1609	56	5	532	5	NCF2	1	183532683	Missense_Mutation	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	8172126	183532683	65717938	9	1792											
DNAJC5G	285126	ucsc.edu;bcgsc.ca	37	2	27500670	27500670	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DNAJC5G	NM_173650	exon4	c.G162A	p.R54R	GGGTAGGAAACTG	.	197	87	171	1	.	226	A	27500670	G	A	27500670	2	1	15	1	0	0	0	0	0	0	0	1	4652	1165	41	3		3	DNAJC5G	2	27500670	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		27500670	215698703	10	1793											
HTRA2	27429	broad.mit.edu;mdanderson.org	37	2	74757144	74757144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HTRA2	NM_013247	exon1	c.C11T	p.P4L	CTGCGCCGAGGGC	.	17	5	25	0	.	91	T	74757144	C	T	74757144	3	4	15	1	0	0	0	0	1	0	0	0	7454	652	23	1	13	1	HTRA2	2	74757144	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	47256474	74757144	168442229	11	1794											
SCN1A	6323	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	166854614	166854614	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SCN1A	NM_001165963	exon23	c.G4410A	p.G1470G	GAAGGACCCAAAG	.	230	102	254	0	.	147	T	166854614	C	T	166854614	2	4	15	1	0	0	0	0	0	0	0	1	13914	494	18	3		3	SCN1A	2	166854614	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	92097470	166854614	76344759	12	1795											
CXCR7	57007	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237489341	237489341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CXCR7	NM_020311	exon2	c.A233T	p.D78V	GCTATGACACGCA	.	159	79	171	0	.	1145	T	237489341	A	T	237489341	3	4	15	1	0	0	0	0	1	0	0	0	4096	275	10	4	235	4	CXCR7	2	237489341	Missense_Mutation	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	70634727	237489341	5710032	13	1796											
FBLN2	2199	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	13612069	13612069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	FBLN2	NM_001998	exon2	c.G214C	p.D72H	TACTATGACTGCC	.	412	255	227	0	.	91	C	13612069	G	C	13612069	3	2	15	1	0	0	0	0	1	0	0	0	5699	1290	45	4		4	FBLN2	3	13612069	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		13612069	184410361	14	1797											
CADPS	8618	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62502268	62502268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CADPS	NM_003716	exon15	c.C2444T	p.S815L	AAGAGTGAGAGAG	.	266	91	271	0	.	281	A	62502268	G	A	62502268	3	1	15	1	0	0	0	0	1	0	0	0	2570	1294	45	3	1754	3	CADPS	3	62502268	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	48890199	62502268	135520162	15	1798											
PARP14	54625	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122418450	122418450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PARP14	NM_017554	exon6	c.G1049A	p.R350H	TGAGGCGTTGTCA	.	141	59	140	0	.	525	A	122418450	G	A	122418450	3	1	15	1	0	0	0	0	1	0	0	0	11458	1145	40	1	1071	1	PARP14	3	122418450	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	59916182	122418450	75603980	16	1799											
COL6A6	131873	ucsc.edu;bcgsc.ca	37	3	130282159	130282159	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	COL6A6	NM_001102608	exon2	c.C312T	p.S104S	CGGGTCCCTGCAG	.	172	82	198	1	.	76	T	130282159	C	T	130282159	2	4	15	1	0	0	0	0	0	0	0	1	3703	610	22	3		3	COL6A6	3	130282159	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	7863709	130282159	67740271	17	1800											
MSX1	4487	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	4864457	4864457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MSX1	NM_002448	exon2	c.C499T	p.R167C	ACCCTCCGCAAAC	.	91	37	83	0	.	90	T	4864457	C	T	4864457	3	4	15	1	0	0	0	0	1	0	0	0	9895	652	23	1	505	1	MSX1	4	4864457	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		4864457	186289819	18	1801											
MTTP	4547	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100532580	100532580	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MTTP	NM_000253	exon15	c.C1959T	p.Y653Y	TCAGTACATTGGG	.	142	68	144	0	.	93	T	100532580	C	T	100532580	2	4	15	1	0	0	0	0	0	0	0	1	9964	489	17	3		3	MTTP	4	100532580	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	95668123	100532580	90621696	19	1802											
HADH	3033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	108940796	108940796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HADH	NM_005327	exon4	c.C520T	p.P174S	TTCAACCCAGTGC	.	114	55	121	0	.	91	T	108940796	C	T	108940796	3	4	15	1	0	0	0	0	1	0	0	0	6942	623	22	3	534	3	HADH	4	108940796	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	8408216	108940796	82213480	20	1803											
ZFP42	132625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	188924586	188924586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ZFP42	NM_174900	exon4	c.C625A	p.L209I	AAGCATCTCCTCA	.	73	21	89	1	.	228	A	188924586	C	A	188924586	3	1	15	1	0	0	0	0	1	0	0	0	17647	913	32	3	627	3	ZFP42	4	188924586	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	79983790	188924586	2229690	21	1804											
DHX29	54505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	54563641	54563641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DHX29	NM_019030	exon22	c.G3304A	p.A1102T	CTGCAGCTAGTGT	.	70	32	66	0	.	229	T	54563641	C	T	54563641	3	4	15	1	0	0	0	0	1	0	0	0	4503	797	28	3	829	3	DHX29	5	54563641	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		54563641	126351619	22	1805											
MAN2A1	4124	ucsc.edu;bcgsc.ca	37	5	109091087	109091087	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MAN2A1	NM_002372	exon5	c.A765G	p.E255E	TGATGAAGCTACT	.	143	68	150	2	.	92	G	109091087	A	G	109091087	2	3	15	1	0	0	0	0	0	0	0	1	9214	69	3	2		2	MAN2A1	5	109091087	Silent	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	54527446	109091087	71824173	23	1806											
TBC1D9B	23061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	179331759	179331760	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	.	.	.	p.P58S	GGTAAGGGGCCAC	.	135	64	186	0	.	.	AA	179331760	GG	AA	179331759	3	1	15	1	0	0	0	0	1	0	0	0	15625	1232	43	3	3664	3	TBC1D9B	5	179331759	Missense_Mutation	DNP	GG	TCGA-BC-A3KG-01A-11D-A20W-10	70240672	179331759	1583501	24	1807											
OR5V1	81696	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29323162	29323162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR5V1	NM_030876	exon1	c.G811T	p.D271Y	ACCTATCTTTCTT	.	132	67	93	1	.	72	A	29323162	C	A	29323162	3	1	15	1	0	0	0	0	1	0	0	0	11184	913	32	3	157	3	OR5V1	6	29323162	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		29323162	141791905	25	1808											
DST	667	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56497659	56497659	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DST	NM_001723	exon14	c.A2187G	p.A729A	TCTTTCTGCAGAT	.	128	46	93	0	.	523	C	56497659	T	C	56497659	2	2	15	1	0	0	0	0	0	0	0	1	4783	1567	55	2		2	DST	6	56497659	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	27174497	56497659	114617408	26	1809											
NMBR	4829	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	142400004	142400004	+	Silent	SNP	C	C	T	rs149123905		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NMBR	NM_002511	exon2	c.G459A	p.T153T	CCCTGACGTCTGC	.	162	20	134	0	C|1.000;T|0.000	946	T	142400004	C	T	142400004	2	4	15	1	0	0	0	0	0	0	0	1	10487	523	19	1		1	NMBR	6	142400004	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	85902345	142400004	28715063	27	1810											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152740820	152740820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SYNE1	NM_033071	exon40	c.C5326A	p.Q1776K	CAAATTGCTGGTG	.	247	79	189	0	.	607	T	152740820	G	T	152740820	3	4	15	1	0	0	0	0	1	0	0	0	15442	1328	46	3	21589	3	SYNE1	6	152740820	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	10340816	152740820	18374247	28	1811											
SEMA3E	9723	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83029465	83029465	+	Silent	SNP	T	T	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SEMA3E	NM_012431	exon11	c.A1245C	p.I415I	AGGTTTTATGGCC	.	178	157	403	0	.	93	G	83029465	T	G	83029465	2	3	15	1	0	0	0	0	0	0	0	1	14028	1744	61	5		5	SEMA3E	7	83029465	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10		83029465	76109198	29	1812											
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151372542	151372542	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PRKAG2	NM_016203	exon4	c.A648G	p.P216P	TGCCAGTGGAGGC	.	71	59	163	0	.	658	C	151372542	T	C	151372542	2	2	15	1	0	0	0	0	0	0	0	1	12501	1683	59	2		2	PRKAG2	7	151372542	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	68343077	151372542	7766121	30	1813											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216824	3216824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CSMD1	NM_033225	exon21	c.G3154T	p.A1052S	TGAAGGCAGGGAC	.	86	71	151	0	.	86	A	3216824	C	A	3216824	3	1	15	1	0	0	0	0	1	0	0	0	3944	710	25	3	7740	3	CSMD1	8	3216824	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		3216824	143147198	31	1814											
RP1L1	94137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	10480350	10480350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RP1L1	NM_178857	exon2	c.A362G	p.E121G	TTTCTCTCCTGTG	.	26	4	63	1	.	139	C	10480350	T	C	10480350	3	2	15	1	0	0	0	0	1	0	0	0	13533	1551	54	2	6852	2	RP1L1	8	10480350	Missense_Mutation	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	7263526	10480350	135883672	32	1815											
KIAA1432	57589	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5742878	5742878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KIAA1432	NM_001206557	exon9	c.A911G	p.N304S	TTTGGAATAAAAC	.	145	73	156	2	.	90	G	5742878	A	G	5742878	3	3	15	1	0	0	0	0	1	0	0	0	8233	101	4	2	704	2	KIAA1432	9	5742878	Missense_Mutation	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10		5742878	135470553	33	1816											
TMEM215	401498	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32784212	32784212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TMEM215	NM_212558	exon2	c.G31T	p.G11W	AGGACTGGGCTGG	.	432	175	390	1	.	90	T	32784212	G	T	32784212	3	4	15	1	0	0	0	0	1	0	0	0	16135	1348	47	3	33	3	TMEM215	9	32784212	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	27041334	32784212	108429219	34	1817											
FOXE1	2304	broad.mit.edu;mdanderson.org	37	9	100616350	100616350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	FOXE1	NM_004473	exon1	c.G154A	p.G52R	CAGCGCGGGAAGC	.	22	7	28	0	.	130	A	100616350	G	A	100616350	3	1	15	1	0	0	0	0	1	0	0	0	6003	1116	39	1	156	1	FOXE1	9	100616350	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	67832138	100616350	40597081	35	1818											
NEK6	10783	hgsc.bcm.edu;bcgsc.ca	37	9	127101926	127101926	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NEK6	NM_001166171	exon9	c.G801T	p.L267L	GTCCCTGGGCTGT	.	238	10	257	0	.	334	T	127101926	G	T	127101926	2	4	15	1	0	0	0	0	0	0	0	1	10328	1335	47	3		3	NEK6	9	127101926	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	26485576	127101926	14111505	36	1819											
CEL	1056	hgsc.bcm.edu;bcgsc.ca	37	9	135944115	135944115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CEL	NM_001807	exon8	c.G961T	p.A321S	ATCCCCGCTGACC	.	650	122	834	1	.	91	T	135944115	G	T	135944115	3	4	15	1	0	0	0	0	1	0	0	0	3209	1087	38	1	991	1	CEL	9	135944115	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	8842189	135944115	5269316	37	1820											
CACNA1B	774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	140878654	140878654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CACNA1B	NM_001243812	exon13	c.T1721A	p.I574N	TTGGGATCAGTGT	.	234	102	283	1	.	138	A	140878654	T	A	140878654	3	1	15	1	0	0	0	0	1	0	0	0	2539	1435	50	4	1771	4	CACNA1B	9	140878654	Missense_Mutation	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	4934539	140878654	334777	38	1821											
ITIH5	80760	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7608182	7608182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ITIH5	NM_030569	exon13	c.G2338T	p.V780L	CCACCACCACACT	.	158	64	198	0	.	92	A	7608182	C	A	7608182	3	1	15	1	0	0	0	0	1	0	0	0	7907	507	18	3	540	3	ITIH5	10	7608182	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		7608182	127926565	39	1822											
NDST2	8509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75566200	75566200	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NDST2	NM_003635	exon6	c.T1281C	p.A427A	GGCCACAGCATAC	.	60	28	95	0	.	91	G	75566200	A	G	75566200	2	3	15	1	0	0	0	0	0	0	0	1	10256	175	7	2		2	NDST2	10	75566200	Silent	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	67958018	75566200	59968547	40	1823											
RASSF10	644943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	13031942	13031942	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_001080521	exon1	c.G819T	p.V273V	CTACGTGCAGGAC	.	364	169	454	0	.	.	T	13031942	G	T	13031942	2	4	15	1	0	0	0	0	0	0	0	1	13085	1306	46	3		3	RASSF10	11	13031942	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		13031942	121974574	41	1824											
CKAP5	9793	ucsc.edu;bcgsc.ca	37	11	46829629	46829629	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CKAP5	NM_001008938	exon8	c.C930T	p.P310P	CAGTTTGGGGTTT	.	225	97	199	1	.	92	A	46829629	G	A	46829629	2	1	15	1	0	0	0	0	0	0	0	1	3445	1335	47	3		3	CKAP5	11	46829629	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	33797687	46829629	88176887	42	1825											
OR4C12	283093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	50003747	50003747	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR4C12	NM_001005270	exon1	c.T291A	p.A97A	GGCTTGAGCCATA	.	210	99	226	0	.	93	T	50003747	A	T	50003747	2	4	15	1	0	0	0	0	0	0	0	1	11046	291	11	4		4	OR4C12	11	50003747	Silent	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	3174118	50003747	85002769	43	1826											
CPT1A	1374	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68530124	68530124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CPT1A	NM_001876	exon15	c.G1846A	p.V616M	CCCGCACGAAGTC	.	85	34	81	0	.	149	T	68530124	C	T	68530124	3	4	15	1	0	0	0	0	1	0	0	0	3831	536	19	1	535	1	CPT1A	11	68530124	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	18526377	68530124	66476392	44	1827											
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124013240	124013240	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	VWA5A	NM_014622	exon16	c.T2115C	p.G705G	CCTAGGTATGAGT	.	90	40	103	0	.	92	C	124013240	T	C	124013240	2	2	15	1	0	0	0	0	0	0	0	1	17239	1625	57	2		2	VWA5A	11	124013240	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	55483116	124013240	10993276	45	1828											
A2M	2	ucsc.edu;bcgsc.ca	37	12	9241795	9241795	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	A2M	NM_000014	exon23	c.2770+1G>T	.	CTCTTACCTGATG	.	117	47	121	1	.	515	A	9241795	C	A	9241795	5	1	15	1	0	0	0	0	0	0	1	0	4	521	18	3	1713	3	A2M	12	9241795	Splice_Site	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		9241795	124610100	46	1829											
KRT84	3890	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	52771877	52771877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KRT84	NM_033045	exon9	c.G1744T	p.G582C	TGCGGCCGCCGCT	.	163	72	210	0	.	91	A	52771877	C	A	52771877	3	1	15	1	0	0	0	0	1	0	0	0	8498	652	23	1	62	1	KRT84	12	52771877	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	43530082	52771877	81080018	47	1830											
MFSD5	84975	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53646714	53646714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MFSD5	NM_001170790	exon2	c.C416T	p.A139V	GAAGGGCCTGCAG	.	174	82	149	0	.	93	T	53646714	C	T	53646714	3	4	15	1	0	0	0	0	1	0	0	0	9534	739	26	3	422	3	MFSD5	12	53646714	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	874837	53646714	80205181	48	1831											
GPR84	53831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54756956	54756956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GPR84	NM_020370	exon2	c.T680C	p.V227A	CTGGCCACATGGT	.	97	40	95	0	.	523	G	54756956	A	G	54756956	3	3	15	1	0	0	0	0	1	0	0	0	6714	159	6	2	514	2	GPR84	12	54756956	Missense_Mutation	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	1110242	54756956	79094939	49	1832											
OR11G2	390439	ucsc.edu;bcgsc.ca	37	14	20666407	20666407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR11G2	NM_001005503	exon1	c.G913C	p.E305Q	AAGAATGAAGCTG	.	217	115	240	2	.	70	C	20666407	G	C	20666407	3	2	15	1	0	0	0	0	1	0	0	0	10925	1291	45	4	915	4	OR11G2	14	20666407	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		20666407	86683133	50	1833											
C15orf43	145645	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	45250636	45250636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	C15orf43	NM_152448	exon3	c.C212T	p.A71V	TCTCTGCGGTAGC	.	142	72	119	0	.	90	T	45250636	C	T	45250636	3	4	15	1	0	0	0	0	1	0	0	0	1797	768	27	1	222	1	C15orf43	15	45250636	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		45250636	57280756	51	1834											
AP3B2	8120	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83331627	83331627	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	AP3B2	NM_004644	exon22	c.G2595T	p.R865R	AGCTACCCGGTGC	.	72	43	62	0	.	94	A	83331627	C	A	83331627	2	1	15	1	0	0	0	0	0	0	0	1	745	610	22	3		3	AP3B2	15	83331627	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	38080991	83331627	19199765	52	1835											
XYLT1	64131	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	17211555	17211555	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	XYLT1	NM_022166	exon11	c.C2505A	p.T835T	GAATTTGGTCTCT	.	216	106	218	0	.	94	T	17211555	G	T	17211555	2	4	15	1	0	0	0	0	0	0	0	1	17460	1335	47	3		3	XYLT1	16	17211555	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		17211555	73143198	53	1836											
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7577565	7577565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.A716G	p.N239S	GAACTGTTACACA	.	111	96	266	0	.	70225	C	7577565	T	C	7577565	3	2	15	1	0	0	0	0	1	0	0	0	16378	1725	60	2	574	2	TP53	17	7577565	Missense_Mutation	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10		7577565	73617645	54	1837											
KDM6B	23135	broad.mit.edu;bcgsc.ca	37	17	7753448	7753448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KDM6B	NM_001080424	exon13	c.G3626A	p.R1209Q	ACCCTCGAAATCC	.	81	5	163	0	.	205	A	7753448	G	A	7753448	3	1	15	1	0	0	0	0	1	0	0	0	8138	1058	37	1	3664	1	KDM6B	17	7753448	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	175883	7753448	73441762	55	1838											
MYH4	4622	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10354170	10354170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MYH4	NM_017533	exon29	c.C3908A	p.S1303Y	AGCTGAGAAACCA	.	145	122	250	0	.	102	T	10354170	G	T	10354170	3	4	15	1	0	0	0	0	1	0	0	0	10037	942	33	3	1959	3	MYH4	17	10354170	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	2600722	10354170	70841040	56	1839											
RHBDF2	79651	hgsc.bcm.edu;bcgsc.ca	37	17	74473785	74473787	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RHBDF2	NM_024599	exon7	c.840_842del	p.280_281del	ACCACATCCTCCT	.	40	28	88	0	.	90	-	74473787	TCC	-	74473785	7	5	15	1	0	1	0	1	0	0	0	0	13320	1435	50	0	1780	0	RHBDF2	17	74473785	In_Frame_Del	DEL	TCC	TCGA-BC-A3KG-01A-11D-A20W-10	64119615	74473785	6721425	57	1840											
TTR	7276	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29172906	29172906	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TTR	NM_000371	exon2	c.T117A	p.A39A	AGATGCTGTCCGA	.	144	63	145	0	.	91	A	29172906	T	A	29172906	2	1	15	1	0	0	0	0	0	0	0	1	16735	1567	55	4		4	TTR	18	29172906	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10		29172906	48904342	58	1841											
EPOR	2057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11491862	11491862	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	EPOR	NM_000121	exon5	c.C609A	p.T203T	ACACTCGGTGCGG	.	25	22	64	0	.	523	T	11491862	G	T	11491862	2	4	15	1	0	0	0	0	0	0	0	1	5189	1103	39	1		1	EPOR	19	11491862	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		11491862	47637121	59	1842											
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39226821	39226821	+	Silent	SNP	C	C	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CAPN12	NM_144691	exon12	c.G1512C	p.P504P	GGTGCTCGGCACC	.	31	15	55	0	.	91	G	39226821	C	G	39226821	2	3	15	1	0	0	0	0	0	0	0	1	2625	871	31	4		4	CAPN12	19	39226821	Silent	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	27734959	39226821	19902162	60	1843											
MED25	81857	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50333046	50333046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MED25	NM_030973	exon6	c.G529A	p.G177R	CAGCGGGGGATCC	.	167	83	147	0	.	91	A	50333046	G	A	50333046	3	1	15	1	0	0	0	0	1	0	0	0	9443	1232	43	3	551	3	MED25	19	50333046	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	11106225	50333046	8795937	61	1844											
SIGLEC1	6614	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	3672111	3672111	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SIGLEC1	NM_023068	exon17	c.C4467T	p.H1489H	CTCCGCGTGCAGC	.	359	172	364	0	.	167	A	3672111	G	A	3672111	2	1	15	1	0	0	0	0	0	0	0	1	14305	1136	40	1		1	SIGLEC1	20	3672111	Silent	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10		3672111	59353409	62	1845											
VSX1	30813	hgsc.bcm.edu;broad.mit.edu	37	20	25057157	25057157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	VSX1	NM_014588	exon5	c.A838G	p.R280G	GCTTCCTTATCAT	.	97	4	88	0	.	90	C	25057157	T	C	25057157	3	2	15	1	0	0	0	0	1	0	0	0	17228	1608	56	2	263	2	VSX1	20	25057157	Missense_Mutation	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	21385046	25057157	37968363	63	1846											
NLGN4X	57502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	6069292	6069292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NLGN4X	NM_181332	exon2	c.G216T	p.Q72H	TAAGTACTGCTCC	.	305	138	382	0	.	195	A	6069292	C	A	6069292	3	1	15	1	0	0	0	0	1	0	0	0	10464	564	20	3	2254	3	NLGN4X	23	6069292	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10		6069292	149201268	64	1847											
TCEANC	170082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	13681572	13681572	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TCEANC	NM_152634	exon4	c.T1035A	p.L345L	AACACTTTTCCTT	.	150	72	158	0	.	41	A	13681572	T	A	13681572	2	1	15	1	0	0	0	0	0	0	0	1	15675	1828	64	4		4	TCEANC	23	13681572	Silent	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	7612280	13681572	141588988	65	1848											
RPS6KA3	6197	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	20194413	20194413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RPS6KA3	NM_004586	exon13	c.G1057T	p.D353Y	ATGTATCTTCAGG	.	356	146	317	0	.	1504	A	20194413	C	A	20194413	3	1	15	1	0	0	0	0	1	0	0	0	13652	913	32	3	1205	3	RPS6KA3	23	20194413	Missense_Mutation	SNP	C	TCGA-BC-A3KG-01A-11D-A20W-10	6512841	20194413	135076147	66	1849											
WDR44	54521	bcgsc.ca;mdanderson.org	37	X	117566745	117566745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	WDR44	NM_001184965	exon13	c.T1739A	p.V580E	AATAGGTATGCAG	.	305	18	295	0	.	133	A	117566745	T	A	117566745	3	1	15	1	0	0	0	0	1	0	0	0	17293	1652	57	4	1789	4	WDR44	23	117566745	Missense_Mutation	SNP	T	TCGA-BC-A3KG-01A-11D-A20W-10	97372332	117566745	37703815	67	1850											
DCAF12L2	340578	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	125299293	125299293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DCAF12L2	NM_001013628	exon1	c.C615A	p.D205E	TACGGTGTCACTC	.	248	44	267	0	.	113	T	125299293	G	T	125299293	3	4	15	1	0	0	0	0	1	0	0	0	4265	1368	48	3	780	3	DCAF12L2	23	125299293	Missense_Mutation	SNP	G	TCGA-BC-A3KG-01A-11D-A20W-10	7732548	125299293	29971267	68	1851											
SLITRK4	139065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717432	142717432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SLITRK4	NM_001184750	exon2	c.T1493C	p.L498S	CTAGCTAAGGGTG	.	245	114	274	0	.	193	G	142717432	A	G	142717432	3	3	15	1	0	0	0	0	1	0	0	0	14745	372	13	2	1024	2	SLITRK4	23	142717432	Missense_Mutation	SNP	A	TCGA-BC-A3KG-01A-11D-A20W-10	17418139	142717432	12553128	69	1852											
SLC45A1	50651	bcgsc.ca;mdanderson.org	37	1	8384368	8384368	+	Silent	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SLC45A1	.	.	.	.	ACAGGGACGCCCA	.	32	9	61	0	.	494	T	8384368	A	T	8384368	2	4	16	1	0	0	0	0	0	0	0	1	14640	290	10	4		4	SLC45A1	1	8384368	Silent	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10		8384368	240866253	1	1853											
C1orf213	148898	ucsc.edu;mdanderson.org	37	1	23698088	23698088	+	RNA	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	C1orf213	.	.	.	.	TTGGCCAGGGTCT	.	90	24	101	0	.	68	G	23698088	A	G	23698088	1	3	16	0	1	0	0	0	0	0	0	0	2030	203	7	2		2	C1orf213	1	23698088	RNA	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	15313720	23698088	225552533	2	1854											
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77528719	77528719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ST6GALNAC5	NM_030965	exon5	c.G839A	p.C280Y	ATGAATGTACAAT	.	142	70	176	0	.	92	A	77528719	G	A	77528719	3	1	16	1	0	0	0	0	1	0	0	0	15226	1377	48	3	857	3	ST6GALNAC5	1	77528719	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	53830631	77528719	171721902	3	1855											
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	103480065	103480065	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	COL11A1	NM_001190709	exon13	c.1455+2T>A	.	TGTCTTACCCGAG	.	151	65	181	1	.	586	T	103480065	A	T	103480065	5	4	16	1	0	0	0	0	0	0	1	0	3667	405	14	4	4066	4	COL11A1	1	103480065	Splice_Site	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	25951346	103480065	145770556	4	1856											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109814047	109814047	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CELSR2	NM_001408	exon27	c.G7716A	p.L2572L	GCTGCTGAGCGCC	.	154	75	179	0	.	526	A	109814047	G	A	109814047	2	1	16	1	0	0	0	0	0	0	0	1	3222	1277	45	3		3	CELSR2	1	109814047	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	6333982	109814047	139436574	5	1857											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118535171	118535171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SPAG17	NM_206996	exon36	c.C5279T	p.P1760L	ACACTGGGGCTCT	.	119	58	151	0	.	158	A	118535171	G	A	118535171	3	1	16	1	0	0	0	0	1	0	0	0	14979	1232	43	3	1444	3	SPAG17	1	118535171	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	8721124	118535171	130715450	6	1858											
ZNF687	57592	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151258940	151258940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF687	NM_020832	exon2	c.C173T	p.S58F	CAGCCTCTGCTGG	.	74	37	86	1	.	92	T	151258940	C	T	151258940	3	4	16	1	0	0	0	0	1	0	0	0	18089	913	32	3	175	3	ZNF687	1	151258940	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	32723769	151258940	97991681	7	1859											
NUP133	55746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229586330	229586330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NUP133	NM_018230	exon23	c.G3122A	p.R1041K	GCTCTTCTATTTT	.	236	81	183	2	.	271	T	229586330	C	T	229586330	3	4	16	1	0	0	0	0	1	0	0	0	10754	913	32	3	364	3	NUP133	1	229586330	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	78327390	229586330	19664291	8	1860											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1371215	1371215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SNTG2	NM_018968	exon17	c.G1589T	p.S530I	GTCAGAGTCTTGC	.	235	53	157	0	.	136	T	1371215	G	T	1371215	3	4	16	1	0	0	0	0	1	0	0	0	14875	1029	36	3	1655	3	SNTG2	2	1371215	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		1371215	241828158	9	1861											
ITSN2	50618	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24509193	24509193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ITSN2	NM_147152	exon16	c.A1751C	p.K584T	AATGATTTTTTAT	.	269	27	157	2	.	539	G	24509193	T	G	24509193	3	3	16	1	0	0	0	0	1	0	0	0	7927	1841	64	5	3493	5	ITSN2	2	24509193	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	23137978	24509193	218690180	10	1862											
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	43779386	43779386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	THADA	NM_001083953	exon18	c.C2767T	p.R923X	GGACTCGCCCATA	.	319	229	179	0	.	228	A	43779386	G	A	43779386	4	1	16	1	0	0	0	0	0	1	0	0	15837	1095	38	1	3178	1	THADA	2	43779386	Nonsense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	19270193	43779386	199419987	11	1863											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86669229	86669229	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KDM3A	NM_001146688	exon2	c.59delT	p.L20fs	TCAGTCTGTCCGC	.	92	58	160	0	.	291	-	86669229	T	-	86669229	7	5	16	1	0	1	0	1	0	0	0	0	8126	1580	55	0	61	0	KDM3A	2	86669229	Frame_Shift_Del	DEL	T	TCGA-BC-A5W4-01A-11D-A28X-10	42889843	86669229	156530144	12	1864											
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898811	130898811	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC74B	NM_207310	exon4	c.C603A	p.P201P	CTTCTGGGGGACG	.	158	75	230	1	.	90	T	130898811	G	T	130898811	2	4	16	1	0	0	0	0	0	0	0	1	2848	1219	43	3		3	CCDC74B	2	130898811	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	44229582	130898811	112300562	13	1865											
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	161055767	161055767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ITGB6	NM_000888	exon2	c.G64A	p.G22S	CACAGCCACCTAG	.	474	92	587	1	.	227	T	161055767	C	T	161055767	3	4	16	1	0	0	0	0	1	0	0	0	7899	594	21	3	2358	3	ITGB6	2	161055767	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	30156956	161055767	82143606	14	1866											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179494983	179494983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TTN	NM_001267550	exon239	c.C44266A	p.H14756N	GGAGGTGGGCACT	.	106	52	137	1	.	636	T	179494983	G	T	179494983	3	4	16	1	0	0	0	0	1	0	0	0	16732	1348	47	3	63923	3	TTN	2	179494983	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	18439216	179494983	63704390	15	1867											
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232087516	232087516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ARMC9	NM_025139	exon6	c.A580G	p.K194E	ACGCCAAAGCTTT	.	125	56	131	0	.	91	G	232087516	A	G	232087516	3	3	16	1	0	0	0	0	1	0	0	0	958	15	1	2	598	2	ARMC9	2	232087516	Missense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	52592533	232087516	11111857	16	1868											
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41274853	41274853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CTNNB1	NM_001098209	exon8	c.T1103A	p.L368H	TAGGACTTCACCT	.	191	92	200	1	.	24361	A	41274853	T	A	41274853	3	1	16	1	0	0	0	0	1	0	0	0	4016	1609	56	4	1129	4	CTNNB1	3	41274853	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10		41274853	156747577	17	1869											
ANO10	55129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43618347	43618347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ANO10	NM_018075	exon6	c.G999A	p.M333I	AATCATCATGACA	.	202	92	288	0	.	92	T	43618347	C	T	43618347	3	4	16	1	0	0	0	0	1	0	0	0	696	826	29	3	1015	3	ANO10	3	43618347	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	2343494	43618347	154404083	18	1870											
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49200783	49200783	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC71	NM_022903	exon2	c.C859G	p.R287G	GTGTTCGAGCTAC	.	23	12	34	0	.	91	C	49200783	G	C	49200783	3	2	16	1	0	0	0	0	1	0	0	0	2844	1066	37	4	548	4	CCDC71	3	49200783	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	5582436	49200783	148821647	19	1871											
ACTR8	93973	broad.mit.edu;ucsc.edu	37	3	53911741	53911741	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ACTR8	NM_022899	exon4	c.T443G	p.L148X	TGATCTAAAATTG	.	126	53	154	2	.	91	C	53911741	A	C	53911741	4	2	16	1	0	0	0	0	0	1	0	0	217	372	13	5	1471	5	ACTR8	3	53911741	Nonsense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	4710958	53911741	144110689	20	1872											
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58107094	58107094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FLNB	NM_001457	exon20	c.C2990G	p.T997R	CTGTGACAGGCCG	.	103	52	153	0	.	593	G	58107094	C	G	58107094	3	3	16	1	0	0	0	0	1	0	0	0	5934	478	17	4	3068	4	FLNB	3	58107094	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	4195353	58107094	139915336	21	1873											
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73433851	73433851	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PDZRN3	NM_015009	exon10	c.C1866T	p.N622N	AGACTCGTTGCTG	.	55	26	111	1	.	232	A	73433851	G	A	73433851	2	1	16	1	0	0	0	0	0	0	0	1	11709	1136	40	1		1	PDZRN3	3	73433851	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	15326757	73433851	124588579	22	1874											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97194245	97194245	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EPHA6	NM_001080448	exon8	c.C1944T	p.A648A	CACCGCCGCTGTT	.	83	14	89	0	.	1561	T	97194245	C	T	97194245	2	4	16	1	0	0	0	0	0	0	0	1	5171	639	23	1		1	EPHA6	3	97194245	Silent	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	23760394	97194245	100828185	23	1875											
LRRC33	375387	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	196386948	196386948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LRRC33	NM_198565	exon3	c.C434T	p.T145M	CCCTGACGGAGGA	.	43	7	97	1	.	92	T	196386948	C	T	196386948	3	4	16	1	0	0	0	0	1	0	0	0	8988	536	19	1	440	1	LRRC33	3	196386948	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	99192703	196386948	1635482	24	1876											
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10077080	10077080	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	WDR1	NM_017491	exon15	c.C1743T	p.S581S	GGCCAGGCTGCTG	.	200	68	387	1	.	48	A	10077080	G	A	10077080	2	1	16	1	0	0	0	0	0	0	0	1	17269	1194	42	3		3	WDR1	4	10077080	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		10077080	181077196	25	1877											
ARL9	132946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57389953	57389953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ARL9	NM_206919	exon4	c.A283G	p.T95A	TTTGGAACCTACC	.	91	80	201	0	.	22	G	57389953	A	G	57389953	3	3	16	1	0	0	0	0	1	0	0	0	948	43	2	2	293	2	ARL9	4	57389953	Missense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	47312873	57389953	133764323	26	1878											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82835447	82835447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	VCAN	NM_004385	exon8	c.A6625C	p.T2209P	TTAGCTACTGCAT	.	109	58	123	0	.	238	C	82835447	A	C	82835447	3	2	16	1	0	0	0	0	1	0	0	0	17135	391	14	5	6651	5	VCAN	5	82835447	Missense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10		82835447	98079813	27	1879											
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150948080	150948080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FAT2	NM_001447	exon1	c.T413G	p.I138S	TCCAGGATGTGGA	.	218	99	296	2	.	96	C	150948080	A	C	150948080	3	2	16	1	0	0	0	0	1	0	0	0	5690	333	12	5	12728	5	FAT2	5	150948080	Missense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	68112633	150948080	29967180	28	1880											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180048543	180048543	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FLT4	NM_182925	exon13	c.G2019A	p.Q673Q	CTCACCCTGCACC	.	59	18	164	0	.	1490	T	180048543	C	T	180048543	2	4	16	1	0	0	0	0	0	0	0	1	5944	695	24	3		3	FLT4	5	180048543	Silent	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	29100463	180048543	866717	29	1881											
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu	37	6	35262247	35262247	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF76	NM_003427	exon13	c.C1509T	p.T503T	CATTACCTCTGGG	.	104	5	332	0	.	90	T	35262247	C	T	35262247	2	4	16	1	0	0	0	0	0	0	0	1	18132	668	24	3		3	ZNF76	6	35262247	Silent	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10		35262247	135852820	30	1882											
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44219604	44219604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HSP90AB1	NM_007355	exon9	c.1445delC	p.S482fs	AGAAGTCCATCTA	.	46	30	160	0	.	658	-	44219604	C	-	44219604	7	5	16	1	0	1	0	1	0	0	0	0	7402	855	30	0	1475	0	HSP90AB1	6	44219604	Frame_Shift_Del	DEL	C	TCGA-BC-A5W4-01A-11D-A28X-10	8957357	44219604	126895463	31	1883											
FYN	2534	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111982951	111982951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FYN	NM_002037	exon14	c.A1605C	p.E535D	CAGGTTTTCACCA	.	33	32	72	1	.	1000	G	111982951	T	G	111982951	3	3	16	1	0	0	0	0	1	0	0	0	6126	1838	64	5	12	5	FYN	6	111982951	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	67763347	111982951	59132116	32	1884											
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134854	128134854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	THEMIS	NM_001010923	exon4	c.A932G	p.K311R	TACTTTTTGTGGA	.	59	46	118	0	.	94	C	128134854	T	C	128134854	3	2	16	1	0	0	0	0	1	0	0	0	15857	1841	64	2	1126	2	THEMIS	6	128134854	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	16151903	128134854	42980213	33	1885											
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17890006	17890006	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SNX13	NM_015132	exon11	c.A1029G	p.V343V	GTCACATACCTTC	.	62	27	78	0	.	650	C	17890006	T	C	17890006	2	2	16	1	0	0	0	0	0	0	0	1	14884	1393	49	2		2	SNX13	7	17890006	Silent	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10		17890006	141248657	34	1886											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18869095	18869095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HDAC9	NM_178425	exon18	c.T2390A	p.F797Y	TCTGCTTTTTTAA	.	67	15	70	0	.	227	A	18869095	T	A	18869095	3	1	16	1	0	0	0	0	1	0	0	0	7014	1841	64	4	2511	4	HDAC9	7	18869095	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	979089	18869095	140269568	35	1887											
SKAP2	8935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26765154	26765154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SKAP2	NM_003930	exon9	c.A689G	p.Y230C	TCATCATAATCCT	.	44	24	64	0	.	91	C	26765154	T	C	26765154	3	2	16	1	0	0	0	0	1	0	0	0	14356	1406	49	2	406	2	SKAP2	7	26765154	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	7896059	26765154	132373509	36	1888											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42004352	42004352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GLI3	NM_000168	exon15	c.C4319A	p.S1440Y	TGACCAGAGTAAT	.	196	88	222	0	.	1149	T	42004352	G	T	42004352	3	4	16	1	0	0	0	0	1	0	0	0	6439	942	33	3	427	3	GLI3	7	42004352	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	15239198	42004352	117134311	37	1889											
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82585867	82585867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PCLO	NM_014510	exon5	c.A4402G	p.I1468V	CTTTGATCTCCTC	.	78	35	59	1	.	29	C	82585867	T	C	82585867	3	2	16	1	0	0	0	0	1	0	0	0	11583	1435	50	2	11127	2	PCLO	7	82585867	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	40581515	82585867	76552796	38	1890											
BPGM	669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134346580	134346580	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BPGM	NM_199186	exon3	c.T321C	p.H107H	GAATCATGGTGAA	.	294	120	301	1	.	226	C	134346580	T	C	134346580	2	2	16	1	0	0	0	0	0	0	0	1	1488	1461	51	2		2	BPGM	7	134346580	Silent	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	51760713	134346580	24792083	39	1891											
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	27255270	27255270	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PTK2B	NM_173174	exon7	c.A169T	p.K57X	AACTTCAAACTGG	.	236	97	286	0	.	1378	T	27255270	A	T	27255270	4	4	16	1	0	0	0	0	0	1	0	0	12763	131	5	4	171	4	PTK2B	8	27255270	Nonsense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10		27255270	119108752	40	1892											
TEK	7010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27157964	27157964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TEK	NM_000459	exon2	c.C188A	p.A63D	TTGAAGCCTTAAT	.	181	58	273	1	.	1584	A	27157964	C	A	27157964	3	1	16	1	0	0	0	0	1	0	0	0	15748	739	26	3	194	3	TEK	9	27157964	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10		27157964	114055467	41	1893											
TLE1	7088	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84208091	84208091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLE1	NM_005077	exon15	c.A1430G	p.Q477R	TTGATCTGGCGAG	.	135	46	233	1	.	92	C	84208091	T	C	84208091	3	2	16	1	0	0	0	0	1	0	0	0	15935	1580	55	2	906	2	TLE1	9	84208091	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	57050127	84208091	57005340	42	1894	14	2									
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84208095	84208095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLE1	NM_005077	exon15	c.C1426A	p.R476S	TCTGGCGAGCATG	.	136	50	237	0	.	92	T	84208095	G	T	84208095	3	4	16	1	0	0	0	0	1	0	0	0	15935	1058	37	1	910	1	TLE1	9	84208095	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	4	84208095	57005336	43	1895	14	2									
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113173839	113173839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SVEP1	NM_153366	exon37	c.A6152G	p.Y2051C	AGGCTGTAACCAT	.	64	43	80	0	.	75	C	113173839	T	C	113173839	3	2	16	1	0	0	0	0	1	0	0	0	15417	1638	57	2	4611	2	SVEP1	9	113173839	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	28965744	113173839	28039592	44	1896											
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130493535	130493535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TTC16	NM_144965	exon14	c.G2473C	p.G825R	GGCCAGGGCCAGA	.	186	51	297	0	.	90	C	130493535	G	C	130493535	3	2	16	1	0	0	0	0	1	0	0	0	16680	1232	43	4	2527	4	TTC16	9	130493535	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	17319696	130493535	10719896	45	1897											
ZDHHC12	84885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131483968	131483968	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC12	NM_032799	exon4	c.G444A	p.L148L	CAGCTGCAGCGCC	.	267	31	618	0	.	90	T	131483968	C	T	131483968	2	4	16	1	0	0	0	0	0	0	0	1	17599	697	25	3		3	ZDHHC12	9	131483968	Silent	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	990433	131483968	9729463	46	1898											
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95111015	95111015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	MYOF	NM_013451	exon35	c.C3860T	p.A1287V	TTTGGCGCCCTTT	.	71	15	208	0	.	93	A	95111015	G	A	95111015	3	1	16	1	0	0	0	0	1	0	0	0	10089	1087	38	1	2405	1	MYOF	10	95111015	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		95111015	40423732	47	1899											
B4GALNT4	338707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	373809	373809	+	Missense_Mutation	SNP	C	C	T	rs144647644	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	B4GALNT4	NM_178537	exon8	c.C764T	p.S255L	GCGGCTCGGACCA	.	41	18	106	0	C|1.000;T|0.000	91	T	373809	C	T	373809	3	4	16	1	0	0	0	0	1	0	0	0	1269	893	31	1	794	1	B4GALNT4	11	373809	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10		373809	134632707	48	1900											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu	37	11	56468748	56468748	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001013358	exon1	c.T885C	p.D295D	TAAGGATGTGAAA	.	36	5	49	0	.	.	C	56468748	T	C	56468748	2	2	16	1	0	0	0	0	0	0	0	1	11252	1461	51	2		2	OR9G9	11	56468748	Silent	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10	56094939	56468748	78537768	49	1901											
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466587	57466587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC5	NM_015457	exon11	c.G1679T	p.R560L	CGGGCCGTGAGGA	.	63	15	92	0	.	226	T	57466587	G	T	57466587	3	4	16	1	0	0	0	0	1	0	0	0	17615	1145	40	1	1717	1	ZDHHC5	11	57466587	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	997839	57466587	77539929	50	1902											
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82571056	82571056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRCP	NM_199418	exon3	c.G335T	p.G112V	TCATTACCAGTGT	.	125	31	155	0	.	91	A	82571056	C	A	82571056	3	1	16	1	0	0	0	0	1	0	0	0	12449	507	18	3	1250	3	PRCP	11	82571056	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	25104469	82571056	52435460	51	1903											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2229596	2229596	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CACNA1C	NM_001129831	exon3	c.G477T	p.L159L	CAACCTGGTAAGT	.	101	86	224	1	.	34	T	2229596	G	T	2229596	2	4	16	1	0	0	0	0	0	0	0	1	2540	1362	47	3		3	CACNA1C	12	2229596	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		2229596	131622299	52	1904											
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	42853904	42853904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRICKLE1	NM_001144882	exon8	c.G2203A	p.A735T	CATGGGCGTACTG	.	78	27	92	0	.	518	T	42853904	C	T	42853904	3	4	16	1	0	0	0	0	1	0	0	0	12486	768	27	1	296	1	PRICKLE1	12	42853904	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	40624308	42853904	90997991	53	1905											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	DCLK1	NM_004734	exon2	c.C53T	p.A18V	CTCTGCGCCTTAT	.	22	21	69	0	.	826	A	36700222	G	A	36700222	3	1	16	1	0	0	0	0	1	0	0	0	4291	1087	38	1	2204	1	DCLK1	13	36700222	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		36700222	78469656	54	1906											
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30066720	30066720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRKD1	NM_002742	exon16	c.C2411A	p.P804H	TTCCAGGGATTTG	.	78	41	87	0	.	1534	T	30066720	G	T	30066720	3	4	16	1	0	0	0	0	1	0	0	0	12518	1232	43	3	339	3	PRKD1	14	30066720	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		30066720	77282820	55	1907											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31294718	31294718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TRPM1	NM_001252020	exon27	c.A4236T	p.K1412N	TTCTTCTTTTTTA	.	43	18	50	0	.	94	A	31294718	T	A	31294718	3	1	16	1	0	0	0	0	1	0	0	0	16582	1606	56	4	696	4	TRPM1	15	31294718	Missense_Mutation	SNP	T	TCGA-BC-A5W4-01A-11D-A28X-10		31294718	71236674	56	1908											
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43622043	43622043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LCMT2	NM_014793	exon1	c.C645G	p.F215L	GACCACGAAAAGG	.	101	53	256	0	.	90	C	43622043	G	C	43622043	3	2	16	1	0	0	0	0	1	0	0	0	8679	1049	37	4	1419	4	LCMT2	15	43622043	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	12327325	43622043	58909349	57	1909											
ZNF710	374655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90611162	90611162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF710	NM_198526	exon2	c.C793T	p.R265C	GTGGAACGCCACA	.	94	51	196	0	.	90	T	90611162	C	T	90611162	3	4	16	1	0	0	0	0	1	0	0	0	18112	536	19	1	795	1	ZNF710	15	90611162	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	46989119	90611162	11920230	58	1910											
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4924702	4924702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	UBN1	NM_001079514	exon15	c.C2291A	p.S764Y	AGCTGTCCTGCCA	.	24	4	49	0	.	92	A	4924702	C	A	4924702	3	1	16	1	0	0	0	0	1	0	0	0	16889	855	30	3	2345	3	UBN1	16	4924702	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10		4924702	85430051	59	1911											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577111	7577111	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.C827G	p.A276G	GGACAGGCACAAA	.	46	41	128	0	.	70225	C	7577111	G	C	7577111	3	2	16	1	0	0	0	0	1	0	0	0	16378	1203	42	4	459	4	TP53	17	7577111	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		7577111	73618099	60	1912											
OMG	4974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29622317	29622317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	OMG	NM_002544	exon2	c.T1033A	p.S345T	CATGTGAATTGAT	.	136	42	170	0	.	493	T	29622317	A	T	29622317	3	4	16	1	0	0	0	0	1	0	0	0	10866	246	9	4	293	4	OMG	17	29622317	Missense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	22045206	29622317	51572893	61	1913											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5428441	5428441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EPB41L3	NM_012307	exon9	c.G936C	p.M312I	TCCTAACATAATT	.	79	35	94	0	.	95	G	5428441	C	G	5428441	3	3	16	1	0	0	0	0	1	0	0	0	5154	478	17	4	2383	4	EPB41L3	18	5428441	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10		5428441	72648807	62	1914											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	9255937	9255939	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ANKRD12	NM_015208	exon9	c.2672_2674del	p.891_892del	AAAATACTGCTGC	.	49	12	45	0	.	92	-	9255939	CTG	-	9255937	7	5	16	1	0	1	0	1	0	0	0	0	640	565	20	0	2702	0	ANKRD12	18	9255937	In_Frame_Del	DEL	CTG	TCGA-BC-A5W4-01A-11D-A28X-10	3827496	9255937	68821311	63	1915											
TICAM1	148022	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4817368	4817368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TICAM1	NM_182919	exon2	c.C1022A	p.T341N	GAGGTGGTATCTT	.	172	76	155	1	.	153	T	4817368	G	T	4817368	3	4	16	1	0	0	0	0	1	0	0	0	15889	1261	44	3	1120	3	TICAM1	19	4817368	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		4817368	54311615	64	1916											
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10475628	10475628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TYK2	NM_003331	exon8	c.C1108T	p.R370W	GCTCCCGCGGCCT	.	68	14	95	0	.	1009	A	10475628	G	A	10475628	3	1	16	1	0	0	0	0	1	0	0	0	16807	1086	38	1	2527	1	TYK2	19	10475628	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	5658260	10475628	48653355	65	1917											
KCNN1	3780	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18099244	18099244	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KCNN1	NM_002248	exon7	c.C1080T	p.L360L	CGCGCTCGTGGTG	.	59	23	137	1	.	22	T	18099244	C	T	18099244	2	4	16	1	0	0	0	0	0	0	0	1	8078	871	31	1		1	KCNN1	19	18099244	Silent	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	7623616	18099244	41029739	66	1918											
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38633281	38633281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SIPA1L3	NM_015073	exon12	c.G3464C	p.R1155P	CCTACCGACAGCC	.	102	43	110	2	.	91	C	38633281	G	C	38633281	3	2	16	1	0	0	0	0	1	0	0	0	14331	1058	37	4	3502	4	SIPA1L3	19	38633281	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	20534037	38633281	20495702	67	1919											
BAX	581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49464295	49464295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BAX	NM_004324	exon5	c.C598T	p.P200S	TGGTGCCCTCTCC	.	28	14	22	0	.	1271	T	49464295	C	T	49464295	3	4	16	1	0	0	0	0	1	0	0	0	1328	623	22	3	616	3	BAX	19	49464295	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	10831014	49464295	9664688	68	1920											
SIGLEC14	100049587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52149062	52149062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SIGLEC14	NM_001098612	exon3	c.G673A	p.E225K	TTCTCTCCGTGGT	.	441	196	695	1	.	23	T	52149062	C	T	52149062	3	4	16	1	0	0	0	0	1	0	0	0	14309	864	30	3	537	3	SIGLEC14	19	52149062	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	2684767	52149062	6979921	69	1921											
KIR3DL2	3812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55378066	55378066	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KIR3DL2	NM_006737	exon9	c.G1248A	p.Q416Q	TTCTCAGAGGCCC	.	213	36	195	1	.	92	A	55378066	G	A	55378066	2	1	16	1	0	0	0	0	0	0	0	1	8321	933	33	3		3	KIR3DL2	19	55378066	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	3229004	55378066	3750917	70	1922											
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56321586	56321586	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NLRP11	NM_145007	exon5	c.C390T	p.Y130Y	AAGTATGTAGAAC	.	107	55	131	0	.	169	A	56321586	G	A	56321586	2	1	16	1	0	0	0	0	0	0	0	1	10473	1372	48	3		3	NLRP11	19	56321586	Silent	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10	943520	56321586	2807397	71	1923											
BMP2	650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6759153	6759153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BMP2	NM_001200	exon3	c.G608T	p.R203M	CAAGCAGGTGGGA	.	96	44	100	0	.	1044	T	6759153	G	T	6759153	3	4	16	1	0	0	0	0	1	0	0	0	1459	1000	35	3	614	3	BMP2	20	6759153	Missense_Mutation	SNP	G	TCGA-BC-A5W4-01A-11D-A28X-10		6759153	56266367	72	1924											
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9365037	9365037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PLCB4	NM_182797	exon12	c.A1043G	p.Q348R	ACAGACAGGTTCT	.	153	75	177	2	.	274	G	9365037	A	G	9365037	3	3	16	1	0	0	0	0	1	0	0	0	12030	188	7	2	1085	2	PLCB4	20	9365037	Missense_Mutation	SNP	A	TCGA-BC-A5W4-01A-11D-A28X-10	2605884	9365037	53660483	73	1925											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40045242	40045242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CHD6	NM_032221	exon33	c.G6472A	p.A2158T	TCTGGGCCGCCAA	.	64	20	89	0	.	238	T	40045242	C	T	40045242	3	4	16	1	0	0	0	0	1	0	0	0	3329	739	26	3	1695	3	CHD6	20	40045242	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	30680205	40045242	22980278	74	1926											
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71401594	71401594	+	Silent	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PIN4	NM_001170747	exon1	c.C34A	p.R12R	CTTGTACGGCAAC	.	170	163	243	2	.	130	A	71401594	C	A	71401594	2	1	16	1	0	0	0	0	0	0	0	1	11931	527	19	1		1	PIN4	23	71401594	Silent	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10		71401594	83868966	75	1927											
TAF9B	51616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	77392438	77392438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TAF9B	NM_015975	exon5	c.G455T	p.S152I	TTGCTACTAACAG	.	83	5	107	0	.	40	A	77392438	C	A	77392438	3	1	16	1	0	0	0	0	1	0	0	0	15533	565	20	3	312	3	TAF9B	23	77392438	Missense_Mutation	SNP	C	TCGA-BC-A5W4-01A-11D-A28X-10	5990844	77392438	77878122	76	1928											
ATP13A2	23400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17331296	17331296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ATP13A2	NM_001141973	exon5	c.C368T	p.S123F	GCCTGGGACTGTG	.	59	6	125	0	.	93	A	17331296	G	A	17331296	3	1	17	1	0	0	0	0	1	0	0	0	1124	1174	41	3	3510	3	ATP13A2	1	17331296	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		17331296	231919325	1	1929											
ATP1A2	477	ucsc.edu;bcgsc.ca	37	1	160106381	160106381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ATP1A2	NM_000702	exon19	c.G2585T	p.G862V	TGGGTGGCTTCTT	.	87	32	105	2	.	518	T	160106381	G	T	160106381	3	4	17	1	0	0	0	0	1	0	0	0	1129	1203	42	3	2659	3	ATP1A2	1	160106381	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	142775085	160106381	89144240	2	1930											
RXRG	6258	ucsc.edu;bcgsc.ca	37	1	165398166	165398166	+	Silent	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RXRG	NM_006917	exon2	c.A87T	p.P29P	TGCTGATGGGCTC	.	72	31	76	2	.	186	A	165398166	T	A	165398166	2	1	17	1	0	0	0	0	0	0	0	1	13765	1451	51	4		4	RXRG	1	165398166	Silent	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	5291785	165398166	83852455	3	1931											
POU2F1	5451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167384897	167384897	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	POU2F1	NM_002697	exon16	c.T2151C	p.S717S	GGTCTCTGCCGCC	.	80	21	133	0	.	579	C	167384897	T	C	167384897	2	2	17	1	0	0	0	0	0	0	0	1	12271	1567	55	2		2	POU2F1	1	167384897	Silent	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	1986731	167384897	81865724	4	1932											
FAM5C	339479	ucsc.edu;bcgsc.ca	37	1	190423871	190423871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FAM5C	NM_199051	exon2	c.T150A	p.D50E	TCCCTTATCAGAG	.	119	22	156	2	.	228	T	190423871	A	T	190423871	3	4	17	1	0	0	0	0	1	0	0	0	5594	446	16	4	2178	4	FAM5C	1	190423871	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	23038974	190423871	58826750	5	1933											
PTPRC	5788	ucsc.edu;bcgsc.ca	37	1	198721765	198721765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PTPRC	NM_002838	exon31	c.T3373A	p.W1125R	ACAAACTGGAGTG	.	111	27	158	2	.	295	A	198721765	T	A	198721765	3	1	17	1	0	0	0	0	1	0	0	0	12797	1580	55	4	3496	4	PTPRC	1	198721765	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	8297894	198721765	50528856	6	1934											
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201294914	201294914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PKP1	NM_000299	exon13	c.T2117C	p.L706P	CCCGGCTTCTCCT	.	116	25	139	0	.	92	C	201294914	T	C	201294914	3	2	17	1	0	0	0	0	1	0	0	0	11984	1609	56	2	2167	2	PKP1	1	201294914	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	2573149	201294914	47955707	7	1935											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215802343	215802343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	USH2A	NM_206933	exon71	c.C15332T	p.T5111I	ACAGGTGTCCCAG	.	109	13	164	0	.	115	A	215802343	G	A	215802343	3	1	17	1	0	0	0	0	1	0	0	0	17033	1377	48	3	284	3	USH2A	1	215802343	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	14507429	215802343	33448278	8	1936											
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228451857	228451857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OBSCN	NM_001271223	exon18	c.G5178T	p.R1726S	GAGCAGGGAGGTG	.	157	57	210	2	.	403	T	228451857	G	T	228451857	3	4	17	1	0	0	0	0	1	0	0	0	10812	1223	43	3	4684	3	OBSCN	1	228451857	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	12649514	228451857	20798764	9	1937											
URB2	9816	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229770867	229770867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	URB2	NM_014777	exon4	c.G507T	p.L169F	CCAGTTGTTTGAG	.	81	27	104	1	.	174	T	229770867	G	T	229770867	3	4	17	1	0	0	0	0	1	0	0	0	17022	1368	48	3	517	3	URB2	1	229770867	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	1319010	229770867	19479754	10	1938											
OR2M7	391196	ucsc.edu;bcgsc.ca	37	1	248487600	248487600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OR2M7	NM_001004691	exon1	c.T271C	p.S91P	AAATGGACTTGCT	.	163	76	206	2	.	70	G	248487600	A	G	248487600	3	3	17	1	0	0	0	0	1	0	0	0	11014	275	10	2	670	2	OR2M7	1	248487600	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	18716733	248487600	763021	11	1939											
ADCY3	109	broad.mit.edu;ucsc.edu	37	2	25057765	25057765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ADCY3	NM_004036	exon9	c.G1703A	p.R568H	TGCAGGCGCAGCC	.	40	7	72	1	.	94	T	25057765	C	T	25057765	3	4	17	1	0	0	0	0	1	0	0	0	295	768	27	1	1783	1	ADCY3	2	25057765	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10		25057765	218141608	12	1940											
ANTXR1	84168	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69379336	69379336	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ANTXR1	NM_032208	exon13	c.C987T	p.I329I	GCTGATCCTGTTC	.	35	19	64	1	.	94	T	69379336	C	T	69379336	2	4	17	1	0	0	0	0	0	0	0	1	711	845	30	3		3	ANTXR1	2	69379336	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	44321571	69379336	173820037	13	1941											
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128628831	128628831	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	AMMECR1L	NM_031445	exon4	c.G510A	p.T170T	GGTTAACGTGTAT	.	44	10	74	0	.	90	T	128628831	C	T	128628831	2	4	17	1	0	0	0	0	0	0	0	1	579	523	19	1		1	AMMECR1L	2	128628831	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	59249495	128628831	114570542	14	1942											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152476269	152476269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	NEB	NM_001271208	exon73	c.A10568G	p.Y3523C	TCTTTGTATTTGT	.	76	28	132	1	.	145	C	152476269	T	C	152476269	3	2	17	1	0	0	0	0	1	0	0	0	10302	1638	57	2	15558	2	NEB	2	152476269	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	23847438	152476269	90723104	15	1943											
COL5A2	1290	broad.mit.edu;bcgsc.ca	37	2	190044308	190044308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	COL5A2	NM_000393	exon1	c.C23A	p.A8E	GGTCTTGCTTCCG	.	64	5	83	0	.	92	T	190044308	G	T	190044308	3	4	17	1	0	0	0	0	1	0	0	0	3697	1319	46	3	4692	3	COL5A2	2	190044308	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	37568039	190044308	53155065	16	1944											
ADAM23	8745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207437884	207437884	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ADAM23	NM_003812	exon18	c.G1702C	p.D568H	GAGTGTGATATTA	.	102	12	165	1	.	228	C	207437884	G	C	207437884	3	2	17	1	0	0	0	0	1	0	0	0	245	1290	45	4	1772	4	ADAM23	2	207437884	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	17393576	207437884	35761489	17	1945											
IL5RA	3568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	3137002	3137002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	IL5RA	NM_001243099	exon8	c.C836A	p.T279K	TTCCTTGTATTGT	.	116	51	161	0	.	91	T	3137002	G	T	3137002	3	4	17	1	0	0	0	0	1	0	0	0	7700	1377	48	3	472	3	IL5RA	3	3137002	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		3137002	194885428	18	1946											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10417206	10417206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ATP2B2	NM_001001331	exon11	c.A1324G	p.K442E	AGAACTTGACAAA	.	126	13	135	0	.	95	C	10417206	T	C	10417206	3	2	17	1	0	0	0	0	1	0	0	0	1140	1821	63	2	2459	2	ATP2B2	3	10417206	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	7280204	10417206	187605224	19	1947											
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41274909	41274909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CTNNB1	NM_001098209	exon8	c.A1159T	p.N387Y	CTCAGGAATCTTT	.	170	64	173	1	.	24361	T	41274909	A	T	41274909	3	4	17	1	0	0	0	0	1	0	0	0	4016	246	9	4	1185	4	CTNNB1	3	41274909	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	30857703	41274909	156747521	20	1948											
ULK4	54986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41954356	41954356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ULK4	NM_017886	exon9	c.G839C	p.W280S	TTCTTCCAAAATG	.	76	25	119	2	.	297	G	41954356	C	G	41954356	3	3	17	1	0	0	0	0	1	0	0	0	16975	595	21	4	3104	4	ULK4	3	41954356	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	679447	41954356	156068074	21	1949											
PXK	54899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58395296	58395296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PXK	NM_017771	exon15	c.A1346G	p.H449R	AGTCCCACCATGG	.	196	92	253	1	.	334	G	58395296	A	G	58395296	3	3	17	1	0	0	0	0	1	0	0	0	12849	159	6	2	1404	2	PXK	3	58395296	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	16440940	58395296	139627134	22	1950											
ALDH1L1	10840	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125844550	125844550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ALDH1L1	NM_001270364	exon15	c.T1739C	p.I580T	GGGATGATGATGC	.	131	19	153	1	.	156	G	125844550	A	G	125844550	3	3	17	1	0	0	0	0	1	0	0	0	494	333	12	2	1035	2	ALDH1L1	3	125844550	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	67449254	125844550	72177880	23	1951											
P2RY1	5028	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	152553754	152553754	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	P2RY1	NM_002563	exon1	c.A183G	p.V61V	CTTGGTATTCATC	.	159	17	209	1	.	500	G	152553754	A	G	152553754	2	3	17	1	0	0	0	0	0	0	0	1	11346	436	16	2		2	P2RY1	3	152553754	Silent	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	26709204	152553754	45468676	24	1952											
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183963596	183963596	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_005787	exon2	c.A201G	p.T67T	AATCTCTGTGTCT	.	73	32	76	1	.	.	C	183963596	T	C	183963596	2	2	17	1	0	0	0	0	0	0	0	1	520	1567	55	2		2	ALG3	3	183963596	Silent	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	31409842	183963596	14058834	25	1953											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1807577	1807577	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FGFR3	NM_001163213	exon13	c.C1752T	p.C584C	CACCTGCAAGCCG	.	54	16	76	0	.	9542	T	1807577	C	T	1807577	2	4	17	1	0	0	0	0	0	0	0	1	5867	718	25	3		3	FGFR3	4	1807577	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10		1807577	189346699	26	1954											
SH3BP2	6452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2829348	2829348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SH3BP2	NM_001145856	exon7	c.A704G	p.D235G	ACGACGATGAGGA	.	67	30	127	0	.	514	G	2829348	A	G	2829348	3	3	17	1	0	0	0	0	1	0	0	0	14245	333	12	2	814	2	SH3BP2	4	2829348	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	1021771	2829348	188324928	27	1955											
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895456	42895456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GRXCR1	NM_001080476	exon1	c.C173A	p.S58Y	GTGATTCCGATGG	.	91	58	134	1	.	23	A	42895456	C	A	42895456	3	1	17	1	0	0	0	0	1	0	0	0	6812	855	30	3	175	3	GRXCR1	4	42895456	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	40066108	42895456	148258820	28	1956											
ART3	419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77025763	77025763	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ART3	NM_001130016	exon10	c.A984G	p.P328P	AATTCCAGAACCT	.	47	36	97	1	.	92	G	77025763	A	G	77025763	2	3	17	1	0	0	0	0	0	0	0	1	998	175	7	2		2	ART3	4	77025763	Silent	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	34130307	77025763	114128513	29	1957											
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	153896514	153896514	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FHDC1	NM_033393	exon11	c.G2071T	p.E691X	GGCATGGAGGAGA	.	29	12	71	0	.	136	T	153896514	G	T	153896514	4	4	17	1	0	0	0	0	0	1	0	0	5876	1175	41	3	2113	3	FHDC1	4	153896514	Nonsense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	76870751	153896514	37257762	30	1958											
CCNJL	79616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159686508	159686508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CCNJL	NM_024565	exon5	c.A695C	p.Y232S	TGGGCATACTCCT	.	31	7	48	0	.	90	G	159686508	T	G	159686508	3	3	17	1	0	0	0	0	1	0	0	0	2929	1406	49	5	624	5	CCNJL	5	159686508	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10		159686508	21228752	31	1959											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65612320	65612320	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	EYS	NM_001142800	exon17	c.T2715C	p.C905C	ATCTTCACAGTCA	.	121	26	203	0	.	660	G	65612320	A	G	65612320	2	3	17	1	0	0	0	0	0	0	0	1	5332	157	6	2		2	EYS	6	65612320	Silent	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10		65612320	105502747	32	1960											
BAI3	577	ucsc.edu;bcgsc.ca	37	6	69349266	69349266	+	Missense_Mutation	SNP	G	G	T	rs146475807	alternate_allele	TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	BAI3	NM_001704	exon3	c.G699T	p.E233D	CCAGGAGCTGCAA	.	23	15	61	2	G|1.000;A|0.000	1148	T	69349266	G	T	69349266	3	4	17	1	0	0	0	0	1	0	0	0	1300	962	34	3	701	3	BAI3	6	69349266	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	3736946	69349266	101765801	33	1961											
IQCE	23288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2625881	2625881	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	IQCE	NM_152558	exon12	c.G864A	p.K288K	GCAGAAGAAGATG	.	45	9	61	1	.	226	A	2625881	G	A	2625881	2	1	17	1	0	0	0	0	0	0	0	1	7806	933	33	3		3	IQCE	7	2625881	Silent	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		2625881	156512782	34	1962											
AEBP1	165	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44151907	44151907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	AEBP1	NM_001129	exon17	c.C2204T	p.S735L	ACCTTTCGCCAGA	.	52	19	86	1	.	90	T	44151907	C	T	44151907	3	4	17	1	0	0	0	0	1	0	0	0	349	893	31	1	2270	1	AEBP1	7	44151907	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	41526026	44151907	114986756	35	1963											
WDR91	29062	broad.mit.edu;bcgsc.ca	37	7	134894445	134894445	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	WDR91	NM_014149	exon2	c.G186A	p.R62R	ATAATCCCGAAGG	.	53	23	102	2	.	137	T	134894445	C	T	134894445	2	4	17	1	0	0	0	0	0	0	0	1	17335	610	22	3		3	WDR91	7	134894445	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	90742538	134894445	24244218	36	1964											
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141755415	141755415	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MGAM	NM_004668	exon28	c.C3372T	p.T1124T	CTCCACCCGCCTT	.	72	14	93	1	.	70	T	141755415	C	T	141755415	2	4	17	1	0	0	0	0	0	0	0	1	9541	610	22	3		3	MGAM	7	141755415	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	6860970	141755415	17383248	37	1965											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu	37	8	3165845	3165845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CSMD1	NM_033225	exon24	c.C3812A	p.P1271H	CACGAAGGTAGTG	.	22	4	71	0	.	86	T	3165845	G	T	3165845	3	4	17	1	0	0	0	0	1	0	0	0	3944	1000	35	3	7070	3	CSMD1	8	3165845	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		3165845	143198177	38	1966											
MTMR7	9108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17163407	17163407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MTMR7	NM_004686	exon11	c.A1211C	p.E404A	ACACACTCAATGA	.	33	14	142	0	.	91	G	17163407	T	G	17163407	3	3	17	1	0	0	0	0	1	0	0	0	9948	1551	54	5	787	5	MTMR7	8	17163407	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	13997562	17163407	129200615	39	1967											
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	3247979	3247979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RFX3	NM_002919	exon16	c.A2021T	p.E674V	TGTAATTCTGGCT	.	32	12	66	0	.	93	A	3247979	T	A	3247979	3	1	17	1	0	0	0	0	1	0	0	0	13264	1783	62	4	396	4	RFX3	9	3247979	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10		3247979	137965452	40	1968											
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26905887	26905887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PLAA	NM_001031689	exon14	c.G2010C	p.Q670H	TCCTGCCTGGCCA	.	93	22	198	0	.	514	G	26905887	C	G	26905887	3	3	17	1	0	0	0	0	1	0	0	0	12011	680	24	4	381	4	PLAA	9	26905887	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	23657908	26905887	114307544	41	1969											
TEK	7010	broad.mit.edu;ucsc.edu	37	9	27212818	27212818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TEK	NM_000459	exon17	c.T2800C	p.S934P	ACCGCGTCCACAC	.	23	6	55	1	.	1584	C	27212818	T	C	27212818	3	2	17	1	0	0	0	0	1	0	0	0	15748	1667	58	2	2866	2	TEK	9	27212818	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	306931	27212818	114000613	42	1970											
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104499796	104499796	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GRIN3A	NM_133445	exon1	c.G466C	p.A156P	GGCCTGCCTCGAT	.	54	19	108	0	.	96	G	104499796	C	G	104499796	3	3	17	1	0	0	0	0	1	0	0	0	6783	739	26	4	2917	4	GRIN3A	9	104499796	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	77286978	104499796	36713635	43	1971											
TMEM38B	55151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	108536210	108536210	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TMEM38B	NM_018112	exon6	c.G725A	p.W242X	TGAGTTGGATGCT	.	95	34	158	0	.	92	A	108536210	G	A	108536210	4	1	17	1	0	0	0	0	0	1	0	0	16157	1357	47	3	747	3	TMEM38B	9	108536210	Nonsense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	4036414	108536210	32677221	44	1972											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113312149	113312149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SVEP1	NM_153366	exon2	c.C767G	p.A256G	CGGCGAGCTAAAG	.	83	16	171	0	.	75	C	113312149	G	C	113312149	3	2	17	1	0	0	0	0	1	0	0	0	15417	971	34	4	10136	4	SVEP1	9	113312149	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	4775939	113312149	27901282	45	1973											
FAM78A	286336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134136583	134136583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FAM78A	NM_033387	exon2	c.G478A	p.D160N	AGTTGTCATTCAT	.	30	7	57	0	.	91	T	134136583	C	T	134136583	3	4	17	1	0	0	0	0	1	0	0	0	5626	826	29	3	377	3	FAM78A	9	134136583	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	20824434	134136583	7076848	46	1974											
DHTKD1	55526	ucsc.edu;bcgsc.ca	37	10	12131085	12131085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	DHTKD1	NM_018706	exon5	c.T818G	p.F273C	TGTACTTTGGGGC	.	53	19	114	2	.	515	G	12131085	T	G	12131085	3	3	17	1	0	0	0	0	1	0	0	0	4500	1841	64	5	836	5	DHTKD1	10	12131085	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10		12131085	123403662	47	1975											
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25464385	25464385	+	Silent	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GPR158	NM_020752	exon1	c.C36A	p.L12L	CTGCCTCCTGCTT	.	57	19	61	1	.	141	A	25464385	C	A	25464385	2	1	17	1	0	0	0	0	0	0	0	1	6663	842	30	3		3	GPR158	10	25464385	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	13333300	25464385	110070362	48	1976											
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43600449	43600449	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RET	NM_020975	exon4	c.G675A	p.T225T	GAGCACGCGCTGG	.	40	13	59	0	.	4507	A	43600449	G	A	43600449	2	1	17	1	0	0	0	0	0	0	0	1	13235	1074	38	1		1	RET	10	43600449	Silent	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	18136064	43600449	91934298	49	1977											
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48389747	48389747	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RBP3	NM_002900	exon1	c.G1131A	p.Q377Q	CGCAGCCTGCAGG	.	41	15	57	0	.	153	T	48389747	C	T	48389747	2	4	17	1	0	0	0	0	0	0	0	1	13157	680	24	3		3	RBP3	10	48389747	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	4789298	48389747	87145000	50	1978											
RTKN2	219790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63957724	63957724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RTKN2	NM_145307	exon12	c.G1773T	p.R591S	TTTCTGCCTTGGA	.	104	37	173	2	.	68	A	63957724	C	A	63957724	3	1	17	1	0	0	0	0	1	0	0	0	13723	738	26	3	60	3	RTKN2	10	63957724	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	15567977	63957724	71577023	51	1979											
SORBS1	10580	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97101323	97101323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SORBS1	NM_001034955	exon25	c.G2608A	p.E870K	GTACCTCGATGTA	.	61	25	86	1	.	155	T	97101323	C	T	97101323	3	4	17	1	0	0	0	0	1	0	0	0	14927	893	31	1	1428	1	SORBS1	10	97101323	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	33143599	97101323	38433424	52	1980											
TUBGCP2	10844	ucsc.edu;bcgsc.ca	37	10	135113524	135113524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TUBGCP2	NM_001256617	exon3	c.G244A	p.V82M	GGTACACCAGCGG	.	115	52	124	2	.	90	T	135113524	C	T	135113524	3	4	17	1	0	0	0	0	1	0	0	0	16763	507	18	3	2528	3	TUBGCP2	10	135113524	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	38012201	135113524	421223	53	1981											
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1778644	1778644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CTSD	NM_001909	exon5	c.G614A	p.R205H	GAGATGCGGGGGT	.	68	34	61	0	.	90	T	1778644	C	T	1778644	3	4	17	1	0	0	0	0	1	0	0	0	4032	768	27	1	644	1	CTSD	11	1778644	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10		1778644	133227872	54	1982											
OR52N4	390072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5776243	5776243	+	Silent	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OR52N4	NM_001005175	exon1	c.C273G	p.L91L	TCATCTCAAGGAC	.	74	12	123	0	.	2	G	5776243	C	G	5776243	2	3	17	1	0	0	0	0	0	0	0	1	11129	813	29	4		4	OR52N4	11	5776243	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	3997599	5776243	129230273	55	1983											
PAX6	5080	ucsc.edu;bcgsc.ca	37	11	31815289	31815289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PAX6	NM_001604	exon11	c.G869T	p.R290I	GCCTGTCTTCTCT	.	134	53	160	2	.	1086	A	31815289	C	A	31815289	3	1	17	1	0	0	0	0	1	0	0	0	11483	913	32	3	457	3	PAX6	11	31815289	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	26039046	31815289	103191227	56	1984											
UBXN1	51035	ucsc.edu;mdanderson.org	37	11	62445985	62445985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	UBXN1	NM_015853	exon3	c.G202T	p.E68X	CTTGCTCTGAGGA	.	59	11	124	2	.	90	A	62445985	C	A	62445985	4	1	17	1	0	0	0	0	0	1	0	0	16908	922	32	3	760	3	UBXN1	11	62445985	Nonsense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	30630696	62445985	72560531	57	1985											
STIP1	10963	broad.mit.edu;bcgsc.ca	37	11	63964989	63964989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	STIP1	NM_006819	exon7	c.A824G	p.Y275C	GCGACTACAATAA	.	66	13	104	2	.	93	G	63964989	A	G	63964989	3	3	17	1	0	0	0	0	1	0	0	0	15284	391	14	2	850	2	STIP1	11	63964989	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	1519004	63964989	71041527	58	1986											
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64434901	64434901	+	Missense_Mutation	SNP	C	C	A	rs143130600	alternate_allele	TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	NRXN2	NM_015080	exon9	c.G1619T	p.G540V	GCTCCACCCCCAG	.	49	11	81	0	C|1.000;T|0.000	232	A	64434901	C	A	64434901	3	1	17	1	0	0	0	0	1	0	0	0	10666	507	18	3	3848	3	NRXN2	11	64434901	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	469912	64434901	70571615	59	1987											
NLRX1	79671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119052990	119052990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	NLRX1	NM_024618	exon9	c.G2542A	p.G848S	GGTGCTGGTGACA	.	25	7	56	0	.	92	A	119052990	G	A	119052990	3	1	17	1	0	0	0	0	1	0	0	0	10485	1348	47	3	2572	3	NLRX1	11	119052990	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	54618089	119052990	15953526	60	1988											
KCNA5	3741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	5154790	5154790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	KCNA5	NM_002234	exon1	c.G1477A	p.G493S	GTTGGGGGCAAGA	.	67	28	112	2	.	715	A	5154790	G	A	5154790	3	1	17	1	0	0	0	0	1	0	0	0	8006	1232	43	3	1479	3	KCNA5	12	5154790	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		5154790	128697105	61	1989											
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93205205	93205205	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	EEA1	NM_003566	exon17	c.A2049G	p.L683L	CTTATTTAACTCC	.	43	11	48	0	.	229	C	93205205	T	C	93205205	2	2	17	1	0	0	0	0	0	0	0	1	4921	1751	61	2		2	EEA1	12	93205205	Silent	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	88050415	93205205	40646690	62	1990											
TEP1	7011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20874511	20874511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TEP1	NM_007110	exon3	c.C616T	p.P206S	AAGAAGGCATTTG	.	29	7	48	1	.	95	A	20874511	G	A	20874511	3	1	17	1	0	0	0	0	1	0	0	0	15756	1203	42	3	7479	3	TEP1	14	20874511	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		20874511	86475029	63	1991											
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50911780	50911780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MAP4K5	NM_006575	exon18	c.G1318T	p.V440L	CTGCCACAGGCCC	.	73	16	122	0	.	546	A	50911780	C	A	50911780	3	1	17	1	0	0	0	0	1	0	0	0	9263	478	17	3	1282	3	MAP4K5	14	50911780	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	30037269	50911780	56437760	64	1992											
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64518505	64518505	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SYNE2	NM_182914	exon48	c.A7874T	p.Y2625F	TGGAATATGATGA	.	225	87	331	2	.	164	T	64518505	A	T	64518505	3	4	17	1	0	0	0	0	1	0	0	0	15443	449	16	4	8060	4	SYNE2	14	64518505	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	13606725	64518505	42831035	65	1993											
FOS	2353	broad.mit.edu;mdanderson.org	37	14	75747795	75747795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FOS	NM_005252	exon4	c.G811A	p.D271N	TTTGATGACTTCC	.	13	6	20	1	.	847	A	75747795	G	A	75747795	3	1	17	1	0	0	0	0	1	0	0	0	5985	1290	45	3	825	3	FOS	14	75747795	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	11229290	75747795	31601745	66	1994											
SERPINA6	866	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94772500	94772500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SERPINA6	NM_001756	exon4	c.G940T	p.D314Y	GCACATCTCCGAG	.	78	30	118	1	.	653	A	94772500	C	A	94772500	3	1	17	1	0	0	0	0	1	0	0	0	14093	913	32	3	285	3	SERPINA6	14	94772500	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	19024705	94772500	12577040	67	1995											
C15orf55	0	ucsc.edu;bcgsc.ca	37	15	34642906	34642907	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	.	.	.	p.P271K	TTTAGCCCAGTGC	.	68	25	114	2	.	.	AA	34642907	CC	AA	34642906	3	1	17	1	0	0	0	0	1	0	0	0	1803	637	22	3	737	3	C15orf55	15	34642906	Missense_Mutation	DNP	CC	TCGA-BC-A69H-01A-11D-A30V-10		34642906	67888486	68	1996											
UNKL	64718	ucsc.edu;bcgsc.ca	37	16	1417119	1417119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	UNKL	NM_023076	exon5	c.C517T	p.R173C	CCAGGCGCAGCTG	.	44	4	64	0	.	90	A	1417119	G	A	1417119	3	1	17	1	0	0	0	0	1	0	0	0	16998	1087	38	1	189	1	UNKL	16	1417119	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		1417119	88937634	69	1997											
TBC1D10B	26000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30370140	30370140	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_015527	exon9	c.1643-2A>T	.	AACGCCTGCAGGG	.	56	16	83	1	.	.	A	30370140	T	A	30370140	5	1	17	1	0	0	0	0	0	0	1	0	15596	1594	55	4	793	4	TBC1D10B	16	30370140	Splice_Site	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	28953021	30370140	59984613	70	1998											
CYLD	1540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50815217	50815217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CYLD	NM_015247	exon11	c.G1579A	p.A527T	ACCTGTGCCCTGA	.	55	17	105	0	.	2444	A	50815217	G	A	50815217	3	1	17	1	0	0	0	0	1	0	0	0	4143	1319	46	3	1609	3	CYLD	16	50815217	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	20445077	50815217	39539536	71	1999											
DDX19B	11269	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70366883	70366883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	DDX19B	NM_007242	exon11	c.A1199C	p.E400A	ATGTTGAACAAGT	.	256	36	495	1	.	226	C	70366883	A	C	70366883	3	2	17	1	0	0	0	0	1	0	0	0	4347	246	9	5	1241	5	DDX19B	16	70366883	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	19551666	70366883	19987870	72	2000											
TAF1C	9013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84214736	84214736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TAF1C	NM_005679	exon11	c.G1299T	p.Q433H	CCCTTTCTGGCAC	.	54	28	114	0	.	91	A	84214736	C	A	84214736	3	1	17	1	0	0	0	0	1	0	0	0	15518	912	32	3	1326	3	TAF1C	16	84214736	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	13847853	84214736	6140017	73	2001											
PRPF8	10594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1576479	1576479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PRPF8	NM_006445	exon24	c.C3670T	p.R1224C	CTGTGCGCTCCTT	.	21	15	63	1	.	525	A	1576479	G	A	1576479	3	1	17	1	0	0	0	0	1	0	0	0	12575	1087	38	1	3417	1	PRPF8	17	1576479	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		1576479	79618731	74	2002											
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	17	7579389	7579399	+	Frame_Shift_Del	DEL	GGGAAGGGACA	GGGAAGGGACA	-	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	GGGAAGGGACA	GGGAAGGGACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon4	c.288_298del	p.96_100del	TTTTCTGGGAAGG	.	65	23	195	0	.	70225	-	7579399	GGGAAGGGACA	-	7579389	7	5	17	1	0	1	0	1	0	0	0	0	16378	1357	47	0	1004	0	TP53	17	7579389	Frame_Shift_Del	DEL	GGGAAGGGACA	TCGA-BC-A69H-01A-11D-A30V-10	6002910	7579389	73615821	75	2003											
KRTAP4-8	728224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39254310	39254310	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_031960	exon1	c.G27A	p.V9V	AGAGCACACGGAG	.	165	26	192	1	.	.	T	39254310	C	T	39254310	2	4	17	1	0	0	0	0	0	0	0	1	8556	465	17	3		3	KRTAP4-8	17	39254310	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	31674921	39254310	41940900	76	2004											
SNF8	11267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47014463	47014463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SNF8	NM_007241	exon4	c.A268T	p.M90L	CCAGCATCTCAGA	.	124	32	135	2	.	90	A	47014463	T	A	47014463	3	1	17	1	0	0	0	0	1	0	0	0	14846	1435	50	4	528	4	SNF8	17	47014463	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	7760153	47014463	34180747	77	2005											
HGS	9146	hgsc.bcm.edu;broad.mit.edu	37	17	79660939	79660939	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	HGS	NM_004712	exon11	c.880delC	p.P294fs	GCGGAGCCCATGC	.	54	15	28	0	.	91	-	79660939	C	-	79660939	7	5	17	1	0	1	0	1	0	0	0	0	7087	739	26	0	922	0	HGS	17	79660939	Frame_Shift_Del	DEL	C	TCGA-BC-A69H-01A-11D-A30V-10	32646476	79660939	1534271	78	2006											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80051623	80051623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FASN	NM_004104	exon4	c.G305A	p.G102E	TGTGTTCCTCGGA	.	68	40	45	0	.	90	T	80051623	C	T	80051623	3	4	17	1	0	0	0	0	1	0	0	0	5683	855	30	3	7390	3	FASN	17	80051623	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	390684	80051623	1143587	79	2007											
LAMA1	284217	ucsc.edu;bcgsc.ca	37	18	6958596	6958596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	LAMA1	NM_005559	exon55	c.G7844A	p.S2615N	GTCCTGCTTTCTA	.	125	24	206	2	.	149	T	6958596	C	T	6958596	3	4	17	1	0	0	0	0	1	0	0	0	8605	797	28	3	1419	3	LAMA1	18	6958596	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10		6958596	71118652	80	2008											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7002349	7002349	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	LAMA1	NM_005559	exon30	c.T4296C	p.D1432D	ACACACATCACAA	.	37	9	52	0	.	149	G	7002349	A	G	7002349	2	3	17	1	0	0	0	0	0	0	0	1	8605	214	8	2		2	LAMA1	18	7002349	Silent	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	43753	7002349	71074899	81	2009											
ALKBH7	84266	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6374593	6374593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ALKBH7	NM_032306	exon3	c.A496C	p.I166L	CTCTACATCCTTA	.	29	15	69	2	.	90	C	6374593	A	C	6374593	3	2	17	1	0	0	0	0	1	0	0	0	532	217	8	5	506	5	ALKBH7	19	6374593	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10		6374593	52754390	82	2010											
ARHGEF18	23370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7535139	7535139	+	Silent	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ARHGEF18	NM_001130955	exon19	c.C3477G	p.L1159L	ACCACTCAGCGCC	.	51	27	115	1	.	228	G	7535139	C	G	7535139	2	3	17	1	0	0	0	0	0	0	0	1	901	813	29	4		4	ARHGEF18	19	7535139	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	1160546	7535139	51593844	83	2011											
OR7D2	162998	broad.mit.edu;mdanderson.org	37	19	9296842	9296842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OR7D2	NM_175883	exon1	c.C385A	p.P129T	TGCCACCCTCTGC	.	18	3	75	0	.	71	A	9296842	C	A	9296842	3	1	17	1	0	0	0	0	1	0	0	0	11219	623	22	3	387	3	OR7D2	19	9296842	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	1761703	9296842	49832141	84	2012											
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17040002	17040002	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CPAMD8	NM_015692	exon24	c.A3035T	p.Q1012L	GGCCGCTGCACAT	.	30	5	37	0	.	141	A	17040002	T	A	17040002	3	1	17	1	0	0	0	0	1	0	0	0	3795	1580	55	4	2839	4	CPAMD8	19	17040002	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	7743160	17040002	42088981	85	2013											
MYO9B	4650	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17283665	17283665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MYO9B	NM_001130065	exon13	c.A2033G	p.D678G	GCATGGACCCCGT	.	16	7	44	2	.	67	G	17283665	A	G	17283665	3	3	17	1	0	0	0	0	1	0	0	0	10085	275	10	2	2079	2	MYO9B	19	17283665	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	243663	17283665	41845318	86	2014											
SLC5A5	6528	ucsc.edu;bcgsc.ca	37	19	18004537	18004537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SLC5A5	NM_000453	exon15	c.C1783T	p.P595S	GAACTCCCCACTG	.	96	35	137	2	.	93	T	18004537	C	T	18004537	3	4	17	1	0	0	0	0	1	0	0	0	14668	623	22	3	1841	3	SLC5A5	19	18004537	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	720872	18004537	41124446	87	2015											
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19655201	19655201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CILP2	NM_153221	exon8	c.C1847A	p.T616N	ACCTCACCTCGGC	.	41	17	71	0	.	91	A	19655201	C	A	19655201	3	1	17	1	0	0	0	0	1	0	0	0	3430	507	18	3	1877	3	CILP2	19	19655201	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	1650664	19655201	39473782	88	2016											
ZNF85	7639	broad.mit.edu;ucsc.edu	37	19	21132332	21132332	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ZNF85	NM_001256171	exon5	c.G1102T	p.G368X	CATACTGGAGAGA	.	47	12	87	1	.	514	T	21132332	G	T	21132332	4	4	17	1	0	0	0	0	0	1	0	0	18190	1349	47	3	1026	3	ZNF85	19	21132332	Nonsense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	1477131	21132332	37996651	89	2017											
ZNF85	7639	ucsc.edu;bcgsc.ca	37	19	21132585	21132585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ZNF85	NM_001256171	exon5	c.G1355A	p.G452E	ATACTGGAGAGAA	.	79	22	123	2	.	514	A	21132585	G	A	21132585	3	1	17	1	0	0	0	0	1	0	0	0	18190	1174	41	3	1279	3	ZNF85	19	21132585	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	253	21132585	37996398	90	2018											
RBM42	79171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36120133	36120133	+	Silent	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RBM42	NM_024321	exon1	c.G78T	p.P26P	CATCCCGGGCAAA	.	27	11	35	0	.	90	T	36120133	G	T	36120133	2	4	17	1	0	0	0	0	0	0	0	1	13136	1103	39	1		1	RBM42	19	36120133	Silent	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	14987548	36120133	23008850	91	2019											
ZBTB32	27033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36207170	36207170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ZBTB32	NM_014383	exon5	c.A1160T	p.Q387L	AGCATCAGATGGA	.	81	27	82	0	.	92	T	36207170	A	T	36207170	3	4	17	1	0	0	0	0	1	0	0	0	17532	188	7	4	1174	4	ZBTB32	19	36207170	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	87037	36207170	22921813	92	2020											
HNRNPUL1	11100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41785002	41785002	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	HNRNPUL1	NM_007040	exon6	c.G807A	p.V269V	CTCCGTGAAGCAC	.	39	14	64	1	.	69	A	41785002	G	A	41785002	2	1	17	1	0	0	0	0	0	0	0	1	7274	1277	45	3		3	HNRNPUL1	19	41785002	Silent	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	5577832	41785002	17343981	93	2021											
PRMT1	3276	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50180570	50180570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PRMT1	NM_001207042	exon1	c.G33A	p.M11I	CATCATGGAGGTG	.	18	4	31	0	.	91	A	50180570	G	A	50180570	3	1	17	1	0	0	0	0	1	0	0	0	12535	1348	47	3	35	3	PRMT1	19	50180570	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	8395568	50180570	8948413	94	2022											
PTOV1	53635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50361895	50361895	+	Silent	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PTOV1	NM_017432	exon10	c.C1026A	p.I342I	CCGGATCATGGAC	.	52	25	81	0	.	226	A	50361895	C	A	50361895	2	1	17	1	0	0	0	0	0	0	0	1	12769	816	29	3		3	PTOV1	19	50361895	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	181325	50361895	8767088	95	2023											
ZNF845	91664	ucsc.edu;bcgsc.ca	37	19	53854400	53854400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_138374	exon4	c.G472T	p.G158W	ACCGAAGGGAAAA	.	199	78	289	2	.	.	T	53854400	G	T	53854400	3	4	17	1	0	0	0	0	1	0	0	0	18188	1000	35	3	482	3	ZNF845	19	53854400	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	3492505	53854400	5274583	96	2024											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2988018	2988018	+	Silent	SNP	G	G	A	rs142755718		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PTPRA	NM_002836	exon15	c.G858A	p.P286P	GACACCGGTTGAA	.	106	14	106	0	G|1.000;A|0.000	227	A	2988018	G	A	2988018	2	1	17	1	0	0	0	0	0	0	0	1	12795	1103	39	1		1	PTPRA	20	2988018	Silent	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10		2988018	60037502	97	2025											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42080424	42080424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	DSCAM	NM_001271534	exon2	c.A317T	p.N106I	GAAGGATTTTCAG	.	46	15	69	0	.	101	A	42080424	T	A	42080424	3	1	17	1	0	0	0	0	1	0	0	0	4768	1493	52	4	5849	4	DSCAM	21	42080424	Missense_Mutation	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10		42080424	6049471	98	2026											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44841639	44841639	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SIK1	NM_173354	exon5	c.G378A	p.A126A	CTTCCGCGCCTCG	.	78	24	111	0	.	346	T	44841639	C	T	44841639	2	4	17	1	0	0	0	0	0	0	0	1	14317	755	27	1		1	SIK1	21	44841639	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	2761215	44841639	3288256	99	2027											
PORCN	64840	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	48375573	48375573	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PORCN	NM_203475	exon13	c.C1176T	p.G392G	ACAGGGCCTGGGG	.	10	8	50	1	.	133	T	48375573	C	T	48375573	2	4	17	1	0	0	0	0	0	0	0	1	12258	726	26	3		3	PORCN	23	48375573	Silent	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10		48375573	106894987	100	2028											
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50350826	50350826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SHROOM4	NM_020717	exon6	c.C3316A	p.P1106T	TGGGAGGAGGAGG	.	30	17	92	0	.	131	T	50350826	G	T	50350826	3	4	17	1	0	0	0	0	1	0	0	0	14296	1174	41	3	1181	3	SHROOM4	23	50350826	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	1975253	50350826	104919734	101	2029											
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90690699	90690699	+	Silent	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PABPC5	NM_080832	exon2	c.T123A	p.A41A	GCCTGCTGGCCCT	.	16	10	53	0	.	110	A	90690699	T	A	90690699	2	1	17	1	0	0	0	0	0	0	0	1	11367	1567	55	4		4	PABPC5	23	90690699	Silent	SNP	T	TCGA-BC-A69H-01A-11D-A30V-10	40339873	90690699	64579861	102	2030											
GLRA4	441509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102978843	102978843	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GLRA4	NM_001024452	exon5	c.T518G	p.L173R	TCCATCAGGCAGG	.	102	69	280	1	.	108	C	102978843	A	C	102978843	3	2	17	1	0	0	0	0	1	0	0	0	6457	188	7	5	850	5	GLRA4	23	102978843	Missense_Mutation	SNP	A	TCGA-BC-A69H-01A-11D-A30V-10	12288144	102978843	52291717	103	2031											
RAB9B	51209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103080318	103080318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RAB9B	NM_016370	exon3	c.G397A	p.V133M	TAGTCACTTGCCT	.	24	17	91	0	.	659	T	103080318	C	T	103080318	3	4	17	1	0	0	0	0	1	0	0	0	12959	565	20	3	212	3	RAB9B	23	103080318	Missense_Mutation	SNP	C	TCGA-BC-A69H-01A-11D-A30V-10	101475	103080318	52190242	104	2032											
IL9R	3581	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	155233210	155233210	+	Missense_Mutation	SNP	G	G	T	rs182426355	by1000genomes;alternate_allele	TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	IL9R	NM_176786	exon4	c.G380T	p.W127L	GCCCCTGGCTCCT	.	76	37	150	1	G|1.000;A|0.000	40	T	155233210	G	T	155233210	3	4	17	1	0	0	0	0	1	0	0	0	7708	1357	47	3	249	3	IL9R	23	155233210	Missense_Mutation	SNP	G	TCGA-BC-A69H-01A-11D-A30V-10	52152892	155233210	37350	105	2033											
DNAJB4	11080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78479088	78479088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DNAJB4	NM_007034	exon2	c.G565A	p.D189N	AACGCTGATGGAA	.	108	46	59	0	.	226	A	78479088	G	A	78479088	3	1	18	1	0	0	0	0	1	0	0	0	4622	1290	45	3	571	3	DNAJB4	1	78479088	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		78479088	170771533	1	2034											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156618360	156618360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BCAN	NM_198427	exon6	c.G770C	p.G257A	ACCCAGGAGAACT	.	85	32	75	0	.	516	C	156618360	G	C	156618360	3	2	18	1	0	0	0	0	1	0	0	0	1345	1188	41	4	788	4	BCAN	1	156618360	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	78139272	156618360	92632261	2	2035											
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160801203	160801203	+	Missense_Mutation	SNP	T	T	G	rs146201991	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CD244	NM_001166663	exon9	c.A1047C	p.Q349H	TTTAGGTTGACTC	.	115	17	74	0	T|1.000;C|0.000	91	G	160801203	T	G	160801203	3	3	18	1	0	0	0	0	1	0	0	0	2987	1722	60	5	69	5	CD244	1	160801203	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	4182843	160801203	88449418	3	2036											
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204588961	204588961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRN2	NM_006338	exon3	c.G160T	p.D54Y	TGCAGTCCACAGT	.	83	36	80	0	.	514	A	204588961	C	A	204588961	3	1	18	1	0	0	0	0	1	0	0	0	9035	855	30	3	1985	3	LRRN2	1	204588961	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	43787758	204588961	44661660	4	2037											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207739189	207739189	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CR1	NM_000651	exon24	c.A3873G	p.Q1291Q	ATTTCAATTAAAA	.	525	218	379	0	.	93	G	207739189	A	G	207739189	2	3	18	1	0	0	0	0	0	0	0	1	3840	98	4	2		2	CR1	1	207739189	Silent	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	3150228	207739189	41511432	5	2038											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211749145	211749145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC30A1	NM_021194	exon2	c.A1109T	p.H370L	AATTCATGAACTT	.	60	23	39	0	.	93	A	211749145	T	A	211749145	3	1	18	1	0	0	0	0	1	0	0	0	14553	1464	51	4	418	4	SLC30A1	1	211749145	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	4009956	211749145	37501476	6	2039											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216420124	216420124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USH2A	NM_007123	exon13	c.A2612T	p.K871I	CCTAATTTGCAAG	.	236	86	157	0	.	115	A	216420124	T	A	216420124	3	1	18	1	0	0	0	0	1	0	0	0	17033	1841	64	4	13250	4	USH2A	1	216420124	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	4670979	216420124	32830497	7	2040											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39213099	39213099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SOS1	NM_005633	exon23	c.C3868T	p.P1290S	CAGGCGGCCCAGC	.	536	205	426	0	.	851	A	39213099	G	A	39213099	3	1	18	1	0	0	0	0	1	0	0	0	14936	1203	42	3	137	3	SOS1	2	39213099	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		39213099	203986274	8	2041											
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54081699	54081699	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR75	NM_006794	exon2	c.G195A	p.L65L	GAAGGACAAGAAG	.	230	96	174	0	.	92	T	54081699	C	T	54081699	2	4	18	1	0	0	0	0	0	0	0	1	6708	477	17	3		3	GPR75	2	54081699	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	14868600	54081699	189117674	9	2042											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71592562	71592563	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ZNF638	NM_014497	exon6	c.1721_1722insA	p.R574fs	TAGATAGAAAAAA	.	65	23	31	0	.	94	A	71592563	-	A	71592562	7	5	18	1	0	1	1	0	0	0	0	0	18052	942	33	0	1739	0	ZNF638	2	71592562	Frame_Shift_Ins	INS	-	TCGA-BD-A2L6-01A-11D-A20W-10	17510863	71592562	171606811	10	2043											
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183847561	183847561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP1	NM_205842	exon13	c.A1214G	p.D405G	ATAAAGTCGTCTG	.	208	93	109	0	.	92	C	183847561	T	C	183847561	3	2	18	1	0	0	0	0	1	0	0	0	10221	1667	58	2	2270	2	NCKAP1	2	183847561	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	112254999	183847561	59351812	11	2044											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220354314	220354314	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEG	NM_005876	exon36	c.G8574A	p.A2858A	GCCAGCGGAGCCC	.	109	34	88	0	.	383	A	220354314	G	A	220354314	2	1	18	1	0	0	0	0	0	0	0	1	15035	1103	39	1		1	SPEG	2	220354314	Silent	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	36506753	220354314	22845059	12	2045											
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47453376	47453376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTPN23	NM_015466	exon21	c.A3992T	p.E1331V	ATGTGGAGCGCGT	.	226	93	169	0	.	227	T	47453376	A	T	47453376	3	4	18	1	0	0	0	0	1	0	0	0	12788	304	11	4	4074	4	PTPN23	3	47453376	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10		47453376	150569054	13	2046											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49153563	49153563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USP19	NM_001199160	exon10	c.G1388A	p.C463Y	GTGAAACAGAAGG	.	177	80	100	0	.	663	T	49153563	C	T	49153563	3	4	18	1	0	0	0	0	1	0	0	0	17047	478	17	3	2943	3	USP19	3	49153563	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	1700187	49153563	148868867	14	2047											
TF	7018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	133476711	133476712	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TF	NM_001063	exon8	c.969_970insG	p.K323fs	TTTAAAAGTCCCC	.	153	54	99	0	.	92	G	133476712	-	G	133476711	7	5	18	1	0	1	1	0	0	0	0	0	15782	69	3	0	999	0	TF	3	133476711	Frame_Shift_Ins	INS	-	TCGA-BD-A2L6-01A-11D-A20W-10	84323148	133476711	64545719	15	2048											
G3BP2	9908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76579227	76579227	+	Silent	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	G3BP2	NM_012297	exon8	c.T765G	p.P255P	ACTAGGAGGCAGG	.	43	29	57	0	.	153	C	76579227	A	C	76579227	2	2	18	1	0	0	0	0	0	0	0	1	6142	291	11	5		5	G3BP2	4	76579227	Silent	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10		76579227	114575049	16	2049											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85711036	85711036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDFY3	NM_014991	exon22	c.C3512T	p.S1171L	TAAAATGAGGACT	.	113	82	139	1	.	93	A	85711036	G	A	85711036	3	1	18	1	0	0	0	0	1	0	0	0	17267	1294	45	3	7256	3	WDFY3	4	85711036	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	9131809	85711036	105443240	17	2050											
MAD2L1	4085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120982128	120982128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAD2L1	NM_002358	exon4	c.C346A	p.P116T	CTCTGGGTGCACT	.	156	62	113	0	.	227	T	120982128	G	T	120982128	3	4	18	1	0	0	0	0	1	0	0	0	9148	1261	44	3	279	3	MAD2L1	4	120982128	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	35271092	120982128	70172148	18	2051											
TRIML1	339976	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	189065204	189065204	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TRIML1	NM_178556	exon5	c.T773A	p.L258X	CACTCTTGCTTCA	.	79	31	85	0	.	156	A	189065204	T	A	189065204	4	1	18	1	0	0	0	0	0	1	0	0	16547	1821	63	4	791	4	TRIML1	4	189065204	Nonsense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	68083076	189065204	2089072	19	2052											
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35793440	35793440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEF2	NM_024867	exon32	c.G4734T	p.M1578I	GTATATGCAGGTT	.	202	71	161	0	.	26	T	35793440	G	T	35793440	3	4	18	1	0	0	0	0	1	0	0	0	15034	1319	46	3	4881	3	SPEF2	5	35793440	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		35793440	145121820	20	2053											
SLC1A3	6507	broad.mit.edu;bcgsc.ca	37	5	36680561	36680561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC1A3	NM_004172	exon8	c.A1159G	p.T387A	CGCGTCACCAGAT	.	86	5	52	0	.	90	G	36680561	A	G	36680561	3	3	18	1	0	0	0	0	1	0	0	0	14433	159	6	2	1202	2	SLC1A3	5	36680561	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	887121	36680561	144234699	21	2054											
SLC38A9	153129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54952566	54952566	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC38A9	NM_173514	exon9	c.T734G	p.L245R	GTACTCAGTATAG	.	107	38	86	0	.	68	C	54952566	A	C	54952566	3	2	18	1	0	0	0	0	1	0	0	0	14611	188	7	5	983	5	SLC38A9	5	54952566	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	18272005	54952566	125962694	22	2055											
PCDHGA11	56105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140803121	140803121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_032091	exon1	c.A2327G	p.Y776C	CCAACTATGGGGA	.	153	54	129	1	.	.	G	140803121	A	G	140803121	3	3	18	1	0	0	0	0	1	0	0	0	11552	449	16	2	2329	2	PCDHGA11	5	140803121	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	85850555	140803121	40112139	23	2056											
DCTN4	51164	ucsc.edu;bcgsc.ca	37	5	150111050	150111050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DCTN4	NM_001135643	exon7	c.A560G	p.D187G	TATTTGTCCTAAA	.	29	4	26	0	.	90	C	150111050	T	C	150111050	3	2	18	1	0	0	0	0	1	0	0	0	4309	1681	58	2	875	2	DCTN4	5	150111050	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	9307929	150111050	30804210	24	2057											
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36652024	36652024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CDKN1A	NM_001220778	exon2	c.G146T	p.W49L	AGCGATGGAACTT	.	78	44	32	0	.	872	T	36652024	G	T	36652024	3	4	18	1	0	0	0	0	1	0	0	0	3158	1357	47	3	148	3	CDKN1A	6	36652024	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		36652024	134463043	25	2058											
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97562045	97562045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	KLHL32,NS,carcinoma,+1	KLHL32	NM_052904	exon7	c.C1014A	p.H338Q	GAGCCACCATTGT	.	81	25	43	0	.	94	A	97562045	C	A	97562045	3	1	18	1	0	0	0	0	1	0	0	0	8386	506	18	3	1036	3	KLHL32	6	97562045	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	60910021	97562045	73553022	26	2059											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129571345	129571345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LAMA2	NM_000426	exon13	c.T1871C	p.M624T	AGCTTATGATTAT	.	97	60	53	0	.	162	C	129571345	T	C	129571345	3	2	18	1	0	0	0	0	1	0	0	0	8606	1464	51	2	1921	2	LAMA2	6	129571345	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	32009300	129571345	41543722	27	2060											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784756	82784756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PCLO	NM_014510	exon2	c.C1201A	p.P401T	GAGCTGGAGTCTT	.	209	73	145	0	.	29	T	82784756	G	T	82784756	3	4	18	1	0	0	0	0	1	0	0	0	11583	1174	41	3	14340	3	PCLO	7	82784756	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		82784756	76353907	28	2061											
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175217	143175217	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAS2R41	NM_176883	exon1	c.C252T	p.F84F	ACAGTTCTTCCAT	.	91	11	81	0	.	92	T	143175217	C	T	143175217	2	4	18	1	0	0	0	0	0	0	0	1	15576	912	32	3		3	TAS2R41	7	143175217	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	60390461	143175217	15963446	29	2062											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28971063	28971063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIF13B	NM_015254	exon32	c.C3847G	p.Q1283E	GACTCTGTGCAAA	.	60	19	30	0	.	22	C	28971063	G	C	28971063	3	2	18	1	0	0	0	0	1	0	0	0	8275	1386	48	4	1669	4	KIF13B	8	28971063	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		28971063	117392959	30	2063											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113668402	113668402	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSMD3	NM_198123	exon18	c.T2985C	p.G995G	CTTGAAACCATTA	.	115	37	72	0	.	1132	G	113668402	A	G	113668402	2	3	18	1	0	0	0	0	0	0	0	1	3946	30	2	2		2	CSMD3	8	113668402	Silent	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	84697339	113668402	32695620	31	2064											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141684416	141684416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTK2	NM_005607	exon29	c.G2756A	p.S919N	TTGTAGCTGTCAG	.	76	29	75	0	.	1517	T	141684416	C	T	141684416	3	4	18	1	0	0	0	0	1	0	0	0	12762	797	28	3	484	3	PTK2	8	141684416	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	28016014	141684416	4679606	32	2065											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144808725	144808725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAM83H	NM_198488	exon5	c.T2906G	p.L969R	TGCCTAAGACGCA	.	59	24	34	0	.	92	C	144808725	A	C	144808725	3	2	18	1	0	0	0	0	1	0	0	0	5640	72	3	5	637	5	FAM83H	8	144808725	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	3124309	144808725	1555297	33	2066											
LRRC19	64922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	26995539	26995539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRC19	NM_022901	exon5	c.G1093T	p.E365X	ATAATTCATGGAT	.	92	39	56	0	.	514	A	26995539	C	A	26995539	4	1	18	1	0	0	0	0	0	1	0	0	8975	835	29	3	23	3	LRRC19	9	26995539	Nonsense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10		26995539	114217892	34	2067											
C9orf85	138241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74586499	74586499	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C9orf85	NM_182505	exon3	c.C288T	p.C96C	AGTTTGCGCAAAA	.	65	33	48	0	.	90	T	74586499	C	T	74586499	2	4	18	1	0	0	0	0	0	0	0	1	2501	776	27	1		1	C9orf85	9	74586499	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	47590960	74586499	66626932	35	2068											
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113550088	113550088	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MUSK	NM_005592	exon13	c.1897delT	p.F633fs	GCAGAATTTGACA	.	124	52	91	0	.	1379	-	113550088	T	-	113550088	7	5	18	1	0	1	0	1	0	0	0	0	9989	1493	52	0	1983	0	MUSK	9	113550088	Frame_Shift_Del	DEL	T	TCGA-BD-A2L6-01A-11D-A20W-10	38963589	113550088	27663343	36	2069											
ORM1	5004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	117086007	117086007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ORM1	NM_000607	exon2	c.A179T	p.Q60L	CGGTTCAGGAGAT	.	353	155	222	0	.	90	T	117086007	A	T	117086007	3	4	18	1	0	0	0	0	1	0	0	0	11267	188	7	4	185	4	ORM1	9	117086007	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	3535919	117086007	24127424	37	2070											
ENG	2022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130587248	130587248	+	Silent	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ENG	NM_001114753	exon7	c.T822A	p.T274T	TTCTCCAGTGGTC	.	40	17	34	0	.	90	T	130587248	A	T	130587248	2	4	18	1	0	0	0	0	0	0	0	1	5117	175	7	4		4	ENG	9	130587248	Silent	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	13501241	130587248	10626183	38	2071											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88259978	88259978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WAPAL	NM_015045	exon3	c.G1022A	p.G341D	CTTACACCCCCTT	.	69	46	67	0	.	91	T	88259978	C	T	88259978	3	4	18	1	0	0	0	0	1	0	0	0	17245	507	18	3	2618	3	WAPAL	10	88259978	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10		88259978	47274769	39	2072											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720811	89720812	+	Frame_Shift_Ins	INS	-	-	A	rs121913291		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTEN	NM_000314	exon8	c.962_963insA	p.T321fs	CTTTAACAAAAAA	.	170	110	171	0	.	17735	A	89720812	-	A	89720811	7	5	18	1	0	1	1	0	0	0	0	0	12738	478	17	0	992	0	PTEN	10	89720811	Frame_Shift_Ins	INS	-	TCGA-BD-A2L6-01A-11D-A20W-10	1460833	89720811	45813936	40	2073											
FRA10AC1	118924	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	95441348	95441348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FRA10AC1	NM_145246	exon11	c.G676T	p.E226X	TGATTTCTTTTCT	.	37	6	35	0	.	90	A	95441348	C	A	95441348	4	1	18	1	0	0	0	0	0	1	0	0	6041	922	32	3	287	3	FRA10AC1	10	95441348	Nonsense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	5720537	95441348	40093399	41	2074											
C11orf35	256329	hgsc.bcm.edu;broad.mit.edu	37	11	556881	556881	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C11orf35	NM_173573	exon8	c.930delC	p.S310fs	TTGCTCGGAGGAA	.	38	13	25	0	.	69	-	556881	G	-	556881	7	5	18	1	0	1	0	1	0	0	0	0	1638	1103	39	0	1002	0	C11orf35	11	556881	Frame_Shift_Del	DEL	G	TCGA-BD-A2L6-01A-11D-A20W-10		556881	134449635	42	2075											
APBB1	322	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6422250	6422250	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	APBB1	NM_001164	exon11	c.C1641G	p.Y547X	CCCCAGGTAATAG	.	197	75	118	1	.	136	C	6422250	G	C	6422250	4	2	18	1	0	0	0	0	0	1	0	0	759	1256	44	4	507	4	APBB1	11	6422250	Nonsense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	5865369	6422250	128584266	43	2076											
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17418492	17418492	+	Missense_Mutation	SNP	C	C	A	rs138642224	byfrequency;alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ABCC8	NM_000352	exon33	c.G4090T	p.V1364F	CATTGACGTGCTT	.	195	78	135	0	C|0.999;T|0.001	91	A	17418492	C	A	17418492	3	1	18	1	0	0	0	0	1	0	0	0	58	536	19	1	683	1	ABCC8	11	17418492	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	10996242	17418492	117588024	44	2077											
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47712149	47712149	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AGBL2	NM_024783	exon10	c.G1110A	p.G370G	CTGCTGCCCATCA	.	216	97	157	0	.	92	T	47712149	C	T	47712149	2	4	18	1	0	0	0	0	0	0	0	1	376	726	26	3		3	AGBL2	11	47712149	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	30293657	47712149	87294367	45	2078											
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130343256	130343256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS15	NM_139055	exon8	c.T2393G	p.F798C	ACTCCTTCTATCT	.	150	74	122	0	.	291	G	130343256	T	G	130343256	3	3	18	1	0	0	0	0	1	0	0	0	260	1783	62	5	2423	5	ADAMTS15	11	130343256	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	82631107	130343256	4663260	46	2079											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2558277	2558277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CACNA1C	NM_001129831	exon4	c.G613T	p.V205L	GTGGTTGTGGGGT	.	97	60	118	0	.	34	T	2558277	G	T	2558277	3	4	18	1	0	0	0	0	1	0	0	0	2540	1377	48	3	627	3	CACNA1C	12	2558277	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		2558277	131293618	47	2080											
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14650961	14650961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ATF7IP	NM_018179	exon15	c.G3767T	p.C1256F	CTTTCTGTGATCC	.	56	38	85	0	.	252	T	14650961	G	T	14650961	3	4	18	1	0	0	0	0	1	0	0	0	1087	1377	48	3	3821	3	ATF7IP	12	14650961	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	12092684	14650961	119200934	48	2081											
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50190101	50190101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP5L	NM_001037806	exon8	c.G1542C	p.E514D	CGCCCCCTCTGGG	.	126	52	85	0	.	68	G	50190101	C	G	50190101	3	3	18	1	0	0	0	0	1	0	0	0	10224	680	24	4	2486	4	NCKAP5L	12	50190101	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	35539140	50190101	83661794	49	2082											
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50291319	50291319	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAIM2	NM_012306	exon4	c.G363A	p.V121V	GAGAGCCACGACA	.	178	69	136	0	.	230	T	50291319	C	T	50291319	2	4	18	1	0	0	0	0	0	0	0	1	5376	581	21	3		3	FAIM2	12	50291319	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	101218	50291319	83560576	50	2083											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124915190	124915190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCOR2	NM_006312	exon11	c.G1026T	p.K342N	GCGCTGCTTGCGG	.	85	43	63	0	.	229	A	124915190	C	A	124915190	3	1	18	1	0	0	0	0	1	0	0	0	10236	796	28	3	6698	3	NCOR2	12	124915190	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	74623871	124915190	8936705	51	2084											
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49281716	49281716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CYSLTR2	NM_020377	exon1	c.A763G	p.I255V	TTGATCATCTTCT	.	49	15	25	0	.	278	G	49281716	A	G	49281716	3	3	18	1	0	0	0	0	1	0	0	0	4202	217	8	2	765	2	CYSLTR2	13	49281716	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10		49281716	65888162	52	2085											
CLYBL	171425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100515304	100515304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CLYBL	NM_206808	exon4	c.A498C	p.L166F	GAATTTAATCCCT	.	65	20	38	0	.	90	C	100515304	A	C	100515304	3	2	18	1	0	0	0	0	1	0	0	0	3573	359	13	5	512	5	CLYBL	13	100515304	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	51233588	100515304	14654574	53	2086											
ING1	3621	hgsc.bcm.edu;bcgsc.ca	37	13	111371870	111371870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ING1	NM_005537	exon2	c.A860G	p.K287R	CTGACAAGCCCAA	.	55	4	43	0	.	515	G	111371870	A	G	111371870	3	3	18	1	0	0	0	0	1	0	0	0	7735	72	3	2	1014	2	ING1	13	111371870	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	10856566	111371870	3798008	54	2087											
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61909960	61909960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PRKCH	NM_006255	exon3	c.C559G	p.H187D	TGCTCTCACTGCA	.	133	71	85	0	.	1063	G	61909960	C	G	61909960	3	3	18	1	0	0	0	0	1	0	0	0	12513	826	29	4	569	4	PRKCH	14	61909960	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10		61909960	45439580	55	2088											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34109151	34109151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RYR3	NM_001036	exon75	c.G10591T	p.D3531Y	GTACAGGATTTGG	.	128	42	95	0	.	520	T	34109151	G	T	34109151	3	4	18	1	0	0	0	0	1	0	0	0	13770	1174	41	3	10889	3	RYR3	15	34109151	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		34109151	68422241	56	2089											
C15orf55	256646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34640560	34640560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C15orf55	NM_175741	exon2	c.C407T	p.A136V	TGACAGCATCTAA	.	112	39	117	0	.	206	T	34640560	C	T	34640560	3	4	18	1	0	0	0	0	1	0	0	0	1803	710	25	3	413	3	C15orf55	15	34640560	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	531409	34640560	67890832	57	2090											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45440496	45440496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DUOX1	NM_017434	exon22	c.G2669C	p.C890S	ACAACTGCCTGTC	.	147	68	126	0	.	142	C	45440496	G	C	45440496	3	2	18	1	0	0	0	0	1	0	0	0	4800	1319	46	4	2747	4	DUOX1	15	45440496	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	10799936	45440496	57090896	58	2091											
SLTM	79811	broad.mit.edu;bcgsc.ca	37	15	59179713	59179713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLTM	NM_024755	exon18	c.A2402G	p.E801G	TTCCCCTCACTTT	.	109	7	85	0	.	91	C	59179713	T	C	59179713	3	2	18	1	0	0	0	0	1	0	0	0	14754	1551	54	2	718	2	SLTM	15	59179713	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	13739217	59179713	43351679	59	2092											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81234212	81234212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIAA1199	NM_018689	exon25	c.G3430T	p.A1144S	CTGAAAGCTCAGA	.	78	30	54	0	.	93	T	81234212	G	T	81234212	3	4	18	1	0	0	0	0	1	0	0	0	8213	971	34	3	3524	3	KIAA1199	15	81234212	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	22054499	81234212	21297180	60	2093											
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92459662	92459662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLCO3A1	NM_013272	exon2	c.G620A	p.R207Q	ACGTGCGGAGGAA	.	122	50	109	0	.	91	A	92459662	G	A	92459662	3	1	18	1	0	0	0	0	1	0	0	0	14728	1116	39	1	626	1	SLCO3A1	15	92459662	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	11225450	92459662	10071730	61	2094											
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22120822	22120822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	VWA3A	NM_173615	exon7	c.G503A	p.G168E	TCAAAGGGGCCAG	.	55	18	33	0	.	1	A	22120822	G	A	22120822	3	1	18	1	0	0	0	0	1	0	0	0	17237	1232	43	3	529	3	VWA3A	16	22120822	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		22120822	68233931	62	2095											
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23700573	23700573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PLK1	NM_005030	exon8	c.G1285C	p.D429H	CTCTGTGATAACA	.	226	29	135	0	.	766	C	23700573	G	C	23700573	3	2	18	1	0	0	0	0	1	0	0	0	12094	1290	45	4	1315	4	PLK1	16	23700573	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	1579751	23700573	66654180	63	2096											
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74943789	74943789	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDR59	NM_030581	exon15	c.A1416G	p.K472K	CTTCACTTTCTGC	.	203	95	123	0	.	92	C	74943789	T	C	74943789	2	2	18	1	0	0	0	0	0	0	0	1	17305	1606	56	2		2	WDR59	16	74943789	Silent	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	51243216	74943789	15410964	64	2097											
MON1B	22879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77228317	77228317	+	Silent	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MON1B	NM_014940	exon4	c.G561T	p.R187R	GCTGCGGGGGGAG	.	90	37	46	0	.	90	T	77228317	G	T	77228317	2	4	18	1	0	0	0	0	0	0	0	1	9699	1219	43	3		3	MON1B	16	77228317	Silent	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	2284528	77228317	13126436	65	2098											
SDR42E1	93517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	82033315	82033315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SDR42E1	NM_145168	exon3	c.A583G	p.R195G	GGTGTCTTTGTTC	.	128	6	105	0	.	90	C	82033315	T	C	82033315	3	2	18	1	0	0	0	0	1	0	0	0	13973	1617	56	2	602	2	SDR42E1	16	82033315	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	4804998	82033315	8321438	66	2099											
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26110007	26110007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NOS2	NM_000625	exon6	c.C593T	p.P198L	CAGCGTGGGGCAT	.	318	116	233	0	.	156	A	26110007	G	A	26110007	3	1	18	1	0	0	0	0	1	0	0	0	10543	1348	47	3	2956	3	NOS2	17	26110007	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		26110007	55085203	67	2100											
NPEPPS	9520	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45608887	45608887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NPEPPS	NM_006310	exon1	c.T221A	p.F74Y	TGGACTTCACCTT	.	242	71	188	0	.	90	A	45608887	T	A	45608887	3	1	18	1	0	0	0	0	1	0	0	0	10575	1783	62	4	223	4	NPEPPS	17	45608887	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10	19498880	45608887	35586323	68	2101											
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62020305	62020305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SCN4A	NM_000334	exon23	c.T4169C	p.M1390T	AAGATCATGTTGA	.	394	152	359	0	.	93	G	62020305	A	G	62020305	3	3	18	1	0	0	0	0	1	0	0	0	13920	217	8	2	1349	2	SCN4A	17	62020305	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	16411418	62020305	19174905	69	2102											
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72363763	72363763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR142	NM_181790	exon1	c.C119T	p.S40F	TGGTGTCCCATGC	.	108	34	90	0	.	93	T	72363763	C	T	72363763	3	4	18	1	0	0	0	0	1	0	0	0	6650	855	30	3	121	3	GPR142	17	72363763	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	10343458	72363763	8831447	70	2103											
RHBDF2	79651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74473344	74473344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RHBDF2	NM_024599	exon8	c.T925A	p.S309T	GGGGGGACTCAAA	.	70	22	49	0	.	90	T	74473344	A	T	74473344	3	4	18	1	0	0	0	0	1	0	0	0	13320	275	10	4	1693	4	RHBDF2	17	74473344	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	2109581	74473344	6721866	71	2104											
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu	37	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	-	A	rs35810558		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ROCK1	NM_005406	exon4	c.363_364insT	p.F121fs	TTCCCAGAAAAAA	.	127	13	83	0	.	1026	A	18629105	-	A	18629104	7	5	18	1	0	1	1	0	0	0	0	0	13517	933	33	0	3821	0	ROCK1	18	18629104	Frame_Shift_Ins	INS	-	TCGA-BD-A2L6-01A-11D-A20W-10		18629104	59448144	72	2105											
MEX3C	51320	hgsc.bcm.edu;mdanderson.org	37	18	48723394	48723394	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MEX3C	NM_016626	exon1	c.G297T	p.G99G	CGGGGCCCCGGGC	.	14	7	12	0	.	659	A	48723394	C	A	48723394	2	1	18	1	0	0	0	0	0	0	0	1	9511	610	22	3		3	MEX3C	18	48723394	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	30094290	48723394	29353854	73	2106											
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12978549	12978549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAST1	NM_014975	exon20	c.G2324C	p.R775P	GCAAGCGATTCTC	.	55	13	41	0	.	523	C	12978549	G	C	12978549	3	2	18	1	0	0	0	0	1	0	0	0	9324	1058	37	4	2402	4	MAST1	19	12978549	Missense_Mutation	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10		12978549	46150434	74	2107											
GPI	2821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	34887542	34887542	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPI	NM_001184722	exon14	c.C1282A	p.R428R	CCCATACGGAAGG	.	109	32	74	0	.	228	A	34887542	C	A	34887542	2	1	18	1	0	0	0	0	0	0	0	1	6611	527	19	1		1	GPI	19	34887542	Silent	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	21908993	34887542	24241441	75	2108											
HIF3A	64344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46812017	46812017	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	HIF3A	NM_152795	exon5	c.G546A	p.K182K	CCTCAAGGCGGCC	.	67	22	43	0	.	228	A	46812017	G	A	46812017	2	1	18	1	0	0	0	0	0	0	0	1	7105	991	35	3		3	HIF3A	19	46812017	Silent	SNP	G	TCGA-BD-A2L6-01A-11D-A20W-10	11924475	46812017	12316966	76	2109											
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	489179	489184	+	In_Frame_Del	DEL	GGCACG	GGCACG	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	GGCACG	GGCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSNK2A1	NM_001895	exon2	c.12_17del	p.4_6del	CTGCTTGGCACGG	.	204	37	143	0	.	791	-	489184	GGCACG	-	489179	7	5	18	1	0	1	0	1	0	0	0	0	3957	1348	47	0	1206	0	CSNK2A1	20	489179	In_Frame_Del	DEL	GGCACG	TCGA-BD-A2L6-01A-11D-A20W-10		489179	62536341	77	2110											
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20177325	20177325	+	Missense_Mutation	SNP	C	C	T	rs142308308		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C20orf26	NM_015585	exon16	c.C1702T	p.R568W	ATTTTCCGGCACT	.	200	113	108	0	C|1.000;T|0.000	94	T	20177325	C	T	20177325	3	4	18	1	0	0	0	0	1	0	0	0	2106	643	23	1	1792	1	C20orf26	20	20177325	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	19688146	20177325	42848195	78	2111											
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	28211905	28211905	+	Splice_Site	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS1	NM_006988	exon8	c.2028+1G>T	.	GAACTACCTTGGG	.	27	12	27	0	.	272	A	28211905	C	A	28211905	5	1	18	1	0	0	0	0	0	0	1	0	255	521	18	3	886	3	ADAMTS1	21	28211905	Splice_Site	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10		28211905	19917990	79	2112											
KRTAP13-4	284827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31802993	31802993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KRTAP13-4	NM_181600	exon1	c.C400A	p.P134T	TGCTACCCAAACT	.	193	92	127	0	.	90	A	31802993	C	A	31802993	3	1	18	1	0	0	0	0	1	0	0	0	8525	623	22	3	402	3	KRTAP13-4	21	31802993	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	3591088	31802993	16326902	80	2113											
C21orf59	56683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33976524	33976524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C21orf59	NM_021254	exon4	c.G445T	p.A149S	TCACCGCGCCTCG	.	172	78	108	0	.	90	A	33976524	C	A	33976524	3	1	18	1	0	0	0	0	1	0	0	0	2130	768	27	1	443	1	C21orf59	21	33976524	Missense_Mutation	SNP	C	TCGA-BD-A2L6-01A-11D-A20W-10	2173531	33976524	14153371	81	2114											
RAC2	5880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37627330	37627330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RAC2	NM_002872	exon5	c.A389G	p.K130R	TTCTCCTTCAGTT	.	330	127	241	1	.	723	C	37627330	T	C	37627330	3	2	18	1	0	0	0	0	1	0	0	0	12975	1609	56	2	197	2	RAC2	22	37627330	Missense_Mutation	SNP	T	TCGA-BD-A2L6-01A-11D-A20W-10		37627330	13677236	82	2115											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70604840	70604840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAF1	NM_004606	exon14	c.A2227G	p.T743A	GGGGAAACTGTTT	.	104	82	74	0	.	900	G	70604840	A	G	70604840	3	3	18	1	0	0	0	0	1	0	0	0	15510	43	2	2	2281	2	TAF1	23	70604840	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10		70604840	84665720	83	2116											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148037577	148037577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AFF2	NM_002025	exon11	c.A2002G	p.R668G	CCACCAAGAGGCC	.	50	42	30	0	.	135	G	148037577	A	G	148037577	3	3	18	1	0	0	0	0	1	0	0	0	357	64	3	2	2099	2	AFF2	23	148037577	Missense_Mutation	SNP	A	TCGA-BD-A2L6-01A-11D-A20W-10	77432737	148037577	7232983	84	2117											
ECE1	1889	broad.mit.edu;bcgsc.ca	37	1	21599363	21599363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ECE1	NM_001397	exon4	c.A322G	p.T108A	AGCTGGTCACTGA	.	165	7	131	2	.	93	C	21599363	T	C	21599363	3	2	19	1	0	0	0	0	1	0	0	0	4889	1667	58	2	2054	2	ECE1	1	21599363	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10		21599363	227651258	1	2118											
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22159859	22159872	+	Frame_Shift_Del	DEL	AAGTAGGGCACCAC	AAGTAGGGCACCAC	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	AAGTAGGGCACCAC	AAGTAGGGCACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HSPG2	NM_005529	exon80	c.10984_10997del	p.3662_3666del	TGCGTGAAGTAGG	.	108	10	85	0	.	141	-	22159872	AAGTAGGGCACCAC	-	22159859	7	5	19	1	0	1	0	1	0	0	0	0	7430	246	9	0	2250	0	HSPG2	1	22159859	Frame_Shift_Del	DEL	AAGTAGGGCACCAC	TCGA-BD-A3EP-01A-11D-A22F-10	560496	22159859	227090762	2	2119											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65335078	65335078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	JAK1	NM_002227	exon6	c.A563T	p.E188V	AGACACTCGTTCT	.	123	35	100	0	.	3900	A	65335078	T	A	65335078	3	1	19	1	0	0	0	0	1	0	0	0	7937	1551	54	4	2981	4	JAK1	1	65335078	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	43175219	65335078	183915543	3	2120											
AGL	178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100340249	100340249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AGL	NM_000644	exon8	c.G965A	p.R322K	AAAATAGGCGAGT	.	64	9	57	1	.	92	A	100340249	G	A	100340249	3	1	19	1	0	0	0	0	1	0	0	0	384	1000	35	3	1060	3	AGL	1	100340249	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	35005171	100340249	148910372	4	2121											
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152759984	152759984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LCE1E	NM_178353	exon2	c.C209A	p.S70Y	GCAGCTCTGGGGG	.	95	46	134	0	.	90	A	152759984	C	A	152759984	3	1	19	1	0	0	0	0	1	0	0	0	8663	913	32	3	211	3	LCE1E	1	152759984	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	52419735	152759984	96490637	5	2122											
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158061246	158061246	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	KIRREL,NS,carcinoma,0	KIRREL	NM_018240	exon11	c.C1371T	p.T457T	GCTCACCATCAAC	.	64	12	57	0	.	91	T	158061246	C	T	158061246	2	4	19	1	0	0	0	0	0	0	0	1	8324	581	21	3		3	KIRREL	1	158061246	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	5301262	158061246	91189375	6	2123											
FCAMR	83953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207133090	207133090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FCAMR	NM_001170631	exon7	c.A1507G	p.M503V	CCAGCATGGTAGA	.	88	23	93	0	.	91	C	207133090	T	C	207133090	3	2	19	1	0	0	0	0	1	0	0	0	5772	1464	51	2	234	2	FCAMR	1	207133090	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	49071844	207133090	42117531	7	2124											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228511085	228511085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OBSCN	NM_001271223	exon67	c.A18301G	p.S6101G	CCTGTGAGCTTTG	.	122	5	90	0	.	403	G	228511085	A	G	228511085	3	3	19	1	0	0	0	0	1	0	0	0	10812	304	11	2	15648	2	OBSCN	1	228511085	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	21377995	228511085	20739536	8	2125											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980414	23980414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATAD2B	NM_017552	exon25	c.C3952A	p.P1318T	TTTCTGGTTTTTC	.	219	53	186	0	.	68	T	23980414	G	T	23980414	3	4	19	1	0	0	0	0	1	0	0	0	1072	1261	44	3	440	3	ATAD2B	2	23980414	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10		23980414	219218959	9	2126											
C2orf44	80304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24261849	24261849	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C2orf44	NM_025203	exon2	c.G516A	p.V172V	TGCCACCACCAGC	.	83	21	77	0	.	154	T	24261849	C	T	24261849	2	4	19	1	0	0	0	0	0	0	0	1	2168	581	21	3		3	C2orf44	2	24261849	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	281435	24261849	218937524	10	2127											
IFT172	26160	hgsc.bcm.edu;bcgsc.ca	37	2	27679434	27679434	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IFT172	NM_015662	exon30	c.A3315G	p.R1105R	AAGCAGTCTAACT	.	81	4	74	0	.	154	C	27679434	T	C	27679434	2	2	19	1	0	0	0	0	0	0	0	1	7557	1664	58	2		2	IFT172	2	27679434	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	3417585	27679434	215519939	11	2128											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	32613893	32613893	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BIRC6	NM_016252	exon4	c.721delA	p.K241fs	CTCAAGAAAATAA	.	173	30	171	0	.	233	-	32613893	A	-	32613893	7	5	19	1	0	1	0	1	0	0	0	0	1438	247	9	0	735	0	BIRC6	2	32613893	Frame_Shift_Del	DEL	A	TCGA-BD-A3EP-01A-11D-A22F-10	4934459	32613893	210585480	12	2129											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84932627	84932627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DNAH6	NM_001370	exon52	c.C8483A	p.A2828E	CATCAGCAAAGCA	.	105	19	65	0	.	69	A	84932627	C	A	84932627	3	1	19	1	0	0	0	0	1	0	0	0	4605	710	25	3	8685	3	DNAH6	2	84932627	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	52318734	84932627	158266746	13	2130											
IL1F10	84639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113831957	113831957	+	Silent	SNP	G	G	T	rs199770962		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IL1F10	NM_173161	exon3	c.G84T	p.L28L	GCTGCTGGTGGGA	.	140	11	135	0	G|0.999;T|0.001	91	T	113831957	G	T	113831957	2	4	19	1	0	0	0	0	0	0	0	1	7652	1335	47	3		3	IL1F10	2	113831957	Silent	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	28899330	113831957	129367416	14	2131											
LCT	3938	hgsc.bcm.edu;bcgsc.ca	37	2	136566972	136566972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LCT	NM_002299	exon8	c.G2945A	p.R982Q	AAAATCCGAGACC	.	85	5	68	0	.	101	T	136566972	C	T	136566972	3	4	19	1	0	0	0	0	1	0	0	0	8693	652	23	1	2878	1	LCT	2	136566972	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	22735015	136566972	106632401	15	2132											
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	159481873	159481873	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PKP4	NM_001005476	exon7	c.C1087T	p.Q363X	ATGGAGCAATTCG	.	268	48	223	0	.	97	T	159481873	C	T	159481873	4	4	19	1	0	0	0	0	0	1	0	0	11987	711	25	3	1109	3	PKP4	2	159481873	Nonsense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	22914901	159481873	83717500	16	2133											
FEV	54738	hgsc.bcm.edu;broad.mit.edu	37	2	219849754	219849754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FEV	NM_017521	exon1	c.A44G	p.Y15C	GGCAGGTACATGT	.	73	4	48	0	.	846	C	219849754	T	C	219849754	3	2	19	1	0	0	0	0	1	0	0	0	5822	1638	57	2	684	2	FEV	2	219849754	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	60367881	219849754	23349619	17	2134											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228012135	228012135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COL4A4	NM_000092	exon2	c.G65A	p.G22D	CAGGGACCTGTGG	.	56	8	62	0	.	142	T	228012135	C	T	228012135	3	4	19	1	0	0	0	0	1	0	0	0	3693	507	18	3	5195	3	COL4A4	2	228012135	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	8162381	228012135	15187238	18	2135											
OR6B3	150681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240984862	240984862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR6B3	NM_173351	exon1	c.C628G	p.P210A	GGAGTGGAAACAC	.	279	55	256	0	.	68	C	240984862	G	C	240984862	3	2	19	1	0	0	0	0	1	0	0	0	11189	1174	41	4	370	4	OR6B3	2	240984862	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	12972727	240984862	2214511	19	2136											
SCN11A	11280	hgsc.bcm.edu;bcgsc.ca	37	3	38921489	38921489	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCN11A	NM_014139	exon19	c.A3345G	p.G1115G	ATACTTTCCAAAT	.	88	4	80	0	.	99	C	38921489	T	C	38921489	2	2	19	1	0	0	0	0	0	0	0	1	13913	1770	62	2		2	SCN11A	3	38921489	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10		38921489	159100941	20	2137											
SNRK	54861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43344896	43344896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNRK	NM_017719	exon3	c.G201T	p.M67I	ATGCATGAAACTA	.	163	49	146	1	.	815	T	43344896	G	T	43344896	3	4	19	1	0	0	0	0	1	0	0	0	14851	1290	45	3	203	3	SNRK	3	43344896	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	4423407	43344896	154677534	21	2138											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49362451	49362451	+	Missense_Mutation	SNP	C	C	A	rs117411669	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	USP4	NM_199443	exon5	c.G509T	p.R170L	AGCTTCCGCATCT	.	150	42	131	0	C|0.999;T|0.001	660	A	49362451	C	A	49362451	3	1	19	1	0	0	0	0	1	0	0	0	17068	652	23	1	2454	1	USP4	3	49362451	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	6017555	49362451	148659979	22	2139											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108723940	108723940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MORC1	NM_014429	exon19	c.G1990T	p.V664F	GTTTGACATTTTC	.	119	25	108	0	.	98	A	108723940	C	A	108723940	3	1	19	1	0	0	0	0	1	0	0	0	9701	478	17	3	1004	3	MORC1	3	108723940	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	59361489	108723940	89298490	23	2140											
CASR	846	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	121980604	121980604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CASR	NM_001178065	exon4	c.A722T	p.E241V	TCAGTGAACTCAT	.	221	20	182	0	.	97	T	121980604	A	T	121980604	3	4	19	1	0	0	0	0	1	0	0	0	2682	246	9	4	732	4	CASR	3	121980604	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	13256664	121980604	76041826	24	2141											
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122849447	122849447	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDIA5	NM_006810	exon11	c.C894A	p.V298V	CCTCGTCATGTTC	.	121	26	113	0	.	91	A	122849447	C	A	122849447	2	1	19	1	0	0	0	0	0	0	0	1	11671	813	29	3		3	PDIA5	3	122849447	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	868843	122849447	75172983	25	2142											
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	131624109	131624109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CPNE4	NM_130808	exon2	c.A179T	p.E60V	CCTACCTCAAACC	.	133	27	126	0	.	92	A	131624109	T	A	131624109	3	1	19	1	0	0	0	0	1	0	0	0	3814	1565	54	4	1554	4	CPNE4	3	131624109	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	8774662	131624109	66398321	26	2143											
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132337601	132337601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACAD11	NM_032169	exon11	c.G1291A	p.E431K	GACCCTCGACTTT	.	238	63	202	0	.	91	T	132337601	C	T	132337601	3	4	19	1	0	0	0	0	1	0	0	0	109	893	31	1	1091	1	ACAD11	3	132337601	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	713492	132337601	65684829	27	2144											
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182566270	182566270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATP11B	NM_014616	exon10	c.C776T	p.A259V	GTGTTGCGGTATA	.	232	59	190	0	.	93	T	182566270	C	T	182566270	3	4	19	1	0	0	0	0	1	0	0	0	1120	768	27	1	814	1	ATP11B	3	182566270	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	50228669	182566270	15456160	28	2145											
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186383833	186383833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HRG	NM_000412	exon1	c.A13G	p.I5V	GCACTCATTGCAG	.	111	26	106	0	.	91	G	186383833	A	G	186383833	3	3	19	1	0	0	0	0	1	0	0	0	7354	217	8	2	15	2	HRG	3	186383833	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	3817563	186383833	11638597	29	2146											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu	37	3	195511811	195511811	+	Missense_Mutation	SNP	G	G	T	rs71291864	bycluster;byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MUC4	NM_018406	exon2	c.C6640A	p.P2214T	AGGAAGGGCTGGT	.	118	6	139	0	CGT|0.250;GGC|0.250;GGCT|0.250;TGTC|0.250	90	T	195511811	G	T	195511811	3	4	19	1	0	0	0	0	1	0	0	0	9978	1232	43	3		3	MUC4	3	195511811	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	9127978	195511811	2510619	30	2147											
SLBP	7884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1701341	1701341	+	Missense_Mutation	SNP	G	G	C	rs200085408		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLBP	NM_006527	exon5	c.C429G	p.N143K	CCCATAGTTGATC	.	264	49	195	0	G|0.999;C|0.001	90	C	1701341	G	C	1701341	3	2	19	1	0	0	0	0	1	0	0	0	14372	1020	36	4	399	4	SLBP	4	1701341	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10		1701341	189452935	31	2148											
WDR1	9948	hgsc.bcm.edu;bcgsc.ca	37	4	10099482	10099482	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR1	NM_017491	exon5	c.T411C	p.S137S	CACAGAAGAGCCA	.	92	4	57	0	.	48	G	10099482	A	G	10099482	2	3	19	1	0	0	0	0	0	0	0	1	17269	59	3	2		2	WDR1	4	10099482	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	8398141	10099482	181054794	32	2149											
CSN3	1448	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	71115098	71115098	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CSN3	NM_005212	exon4	c.T471C	p.T157T	AGTCACTCCAGAA	.	115	12	77	1	.	93	C	71115098	T	C	71115098	2	2	19	1	0	0	0	0	0	0	0	1	3949	1538	54	2		2	CSN3	4	71115098	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	61015616	71115098	120039178	33	2150											
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64748641	64748641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ADAMTS6	NM_197941	exon5	c.G736A	p.V246M	TGCTCACTGATCT	.	324	58	251	0	.	226	T	64748641	C	T	64748641	3	4	19	1	0	0	0	0	1	0	0	0	270	565	20	3	2701	3	ADAMTS6	5	64748641	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10		64748641	116166619	34	2151											
GFM2	84340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74037421	74037421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GFM2	NM_032380	exon11	c.A863G	p.D288G	TCATCATCCAAAT	.	420	97	327	1	.	90	C	74037421	T	C	74037421	3	2	19	1	0	0	0	0	1	0	0	0	6342	1435	50	2	1552	2	GFM2	5	74037421	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	9288780	74037421	106877839	35	2152											
HIST1H4K	8362	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27799271	27799271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HIST1H4K	NM_003541	exon1	c.G35T	p.G12V	CCTTTGCCAAGAC	.	317	53	275	1	.	90	A	27799271	C	A	27799271	3	1	19	1	0	0	0	0	1	0	0	0	7175	739	26	3	280	3	HIST1H4K	6	27799271	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10		27799271	143315796	36	2153											
ZNF318	24149	broad.mit.edu;mdanderson.org	37	6	43325451	43325451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF318	NM_014345	exon3	c.G601A	p.G201S	CAAGACCCCGAGA	.	106	24	68	0	.	157	T	43325451	C	T	43325451	3	4	19	1	0	0	0	0	1	0	0	0	17833	623	22	3	6270	3	ZNF318	6	43325451	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	15526180	43325451	127789616	37	2154											
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	49936572	49936572	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DEFB113	NM_001037729	exon2	c.A67T	p.K23X	TTTTTTTCTGTGG	.	97	21	99	0	.	90	A	49936572	T	A	49936572	4	1	19	1	0	0	0	0	0	1	0	0	4402	1792	62	4	177	4	DEFB113	6	49936572	Nonsense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	6611121	49936572	121178495	38	2155											
BMP5	653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55639030	55639030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BMP5	NM_021073	exon4	c.A844G	p.N282D	TTACGTTGATACT	.	230	32	175	0	.	516	C	55639030	T	C	55639030	3	2	19	1	0	0	0	0	1	0	0	0	1463	1812	63	2	536	2	BMP5	6	55639030	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	5702458	55639030	115476037	39	2156											
DSE	29940	hgsc.bcm.edu;broad.mit.edu	37	6	116757465	116757465	+	Missense_Mutation	SNP	G	G	C	rs141851816	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DSE	NM_001080976	exon6	c.G1834C	p.G612R	AGAGATGGTCTCT	.	135	6	52	0	G|1.000;A|0.000	91	C	116757465	G	C	116757465	3	2	19	1	0	0	0	0	1	0	0	0	4774	1348	47	4	1852	4	DSE	6	116757465	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	61118435	116757465	54357602	40	2157											
LTV1	84946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	144184607	144184607	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LTV1	NM_032860	exon11	c.A1371G	p.R457R	GAAAAGAAGGCAA	.	260	77	201	0	.	91	G	144184607	A	G	144184607	2	3	19	1	0	0	0	0	0	0	0	1	9081	243	9	2		2	LTV1	6	144184607	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	27427142	144184607	26930460	41	2158											
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148846461	148846461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SASH1	NM_015278	exon11	c.A1244G	p.N415S	TGACGAATCGCTC	.	67	17	61	0	.	90	G	148846461	A	G	148846461	3	3	19	1	0	0	0	0	1	0	0	0	13848	101	4	2	1286	2	SASH1	6	148846461	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	4661854	148846461	22268606	42	2159											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522125	157522125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ARID1B	NM_020732	exon18	c.C4397A	p.A1466E	TGTGGGCAGCACG	.	126	16	69	0	.	154	A	157522125	C	A	157522125	3	1	19	1	0	0	0	0	1	0	0	0	914	710	25	3	4467	3	ARID1B	6	157522125	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	8675664	157522125	13592942	43	2160											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21469601	21469601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SP4	NM_003112	exon3	c.A818G	p.N273S	TAAACAACGTGGC	.	174	44	130	0	.	95	G	21469601	A	G	21469601	3	3	19	1	0	0	0	0	1	0	0	0	14966	43	2	2	828	2	SP4	7	21469601	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		21469601	137669062	44	2161											
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44612257	44612257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DDX56	NM_001257189	exon4	c.G470T	p.R157L	GAGTCACGAAGTT	.	209	51	133	0	.	227	A	44612257	C	A	44612257	3	1	19	1	0	0	0	0	1	0	0	0	4374	536	19	1	1217	1	DDX56	7	44612257	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	23142656	44612257	114526406	45	2162											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82389961	82389961	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCLO	NM_033026	exon24	c.T15282C	p.S5094S	CTGAAGAGAATGT	.	508	113	390	0	.	29	G	82389961	A	G	82389961	2	3	19	1	0	0	0	0	0	0	0	1	11583	291	11	2		2	PCLO	7	82389961	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	37777704	82389961	76748702	46	2163											
GRM3	2913	broad.mit.edu;bcgsc.ca	37	7	86469096	86469096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRM3	NM_000840	exon4	c.T2266C	p.F756L	TACGCCTTCAAAA	.	135	6	86	1	.	528	C	86469096	T	C	86469096	3	2	19	1	0	0	0	0	1	0	0	0	6798	1609	56	2	2276	2	GRM3	7	86469096	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	4079135	86469096	72669567	47	2164											
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148456419	148456422	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CUL1	NM_003592	exon5	c.507_510del	p.169_170del	GAGAGACTGTCTG	.	184	29	125	0	.	226	-	148456422	CTGT	-	148456419	7	5	19	1	0	1	0	1	0	0	0	0	4054	564	20	0	521	0	CUL1	7	148456419	Frame_Shift_Del	DEL	CTGT	TCGA-BD-A3EP-01A-11D-A22F-10	61987323	148456419	10682244	48	2165											
TEX15	56154	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	30701385	30701385	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TEX15	NM_031271	exon1	c.C5149T	p.R1717X	AGCTTCGCAATGT	.	91	30	99	1	.	97	A	30701385	G	A	30701385	4	1	19	1	0	0	0	0	0	1	0	0	15776	1095	38	1	3236	1	TEX15	8	30701385	Nonsense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10		30701385	115662637	49	2166											
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42176090	42176090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IKBKB	NM_001556	exon13	c.C1261G	p.L421V	AGGAATCTCGCCT	.	77	12	100	0	.	1164	G	42176090	C	G	42176090	3	3	19	1	0	0	0	0	1	0	0	0	7611	913	32	4	1307	4	IKBKB	8	42176090	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	11474705	42176090	104187932	50	2167											
COPS5	10987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67974167	67974167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COPS5	NM_006837	exon1	c.C65T	p.A22V	CTCTGAGCTTCCT	.	92	7	71	0	.	660	A	67974167	G	A	67974167	3	1	19	1	0	0	0	0	1	0	0	0	3736	971	34	3	971	3	COPS5	8	67974167	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	25798077	67974167	78389855	51	2168											
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75927121	75927121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CRISPLD1	NM_031461	exon6	c.G701A	p.G234D	GAGGGGGCTGTAG	.	143	31	141	0	.	91	A	75927121	G	A	75927121	3	1	19	1	0	0	0	0	1	0	0	0	3882	1203	42	3	719	3	CRISPLD1	8	75927121	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	7952954	75927121	70436901	52	2169											
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100829851	100829851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	VPS13B	NM_017890	exon45	c.A8256C	p.Q2752H	TGGTCAAGATGGA	.	232	49	147	0	.	301	C	100829851	A	C	100829851	3	2	19	1	0	0	0	0	1	0	0	0	17187	69	3	5	8624	5	VPS13B	8	100829851	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	24902730	100829851	45534171	53	2170											
ANXA13	312	hgsc.bcm.edu;broad.mit.edu	37	8	124705521	124705521	+	Nonsense_Mutation	SNP	C	C	T	rs146521013	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ANXA13	NM_001003954	exon9	c.G681A	p.W227X	AGTGCCCCAGCGG	.	166	9	90	0	C|1.000;A|0.000	93	T	124705521	C	T	124705521	4	4	19	1	0	0	0	0	0	1	0	0	717	624	22	3	408	3	ANXA13	8	124705521	Nonsense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	23875670	124705521	21658501	54	2171											
KCNK9	51305	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	140630800	140630800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCNK9	NM_016601	exon2	c.C826T	p.P276S	CCTCAGGGATGTG	.	33	8	44	1	.	93	A	140630800	G	A	140630800	3	1	19	1	0	0	0	0	1	0	0	0	8072	1232	43	3	302	3	KCNK9	8	140630800	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	15925279	140630800	5733222	55	2172											
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	144940354	144940354	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EPPK1	NM_031308	exon1	c.C7068T	p.R2356R	GGGCACGCGGTGG	.	22	10	23	0	.	25	A	144940354	G	A	144940354	2	1	19	1	0	0	0	0	0	0	0	1	5190	1074	38	1		1	EPPK1	8	144940354	Silent	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	4309554	144940354	1423668	56	2173											
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145112137	145112137	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OPLAH	NM_017570	exon11	c.G1509A	p.L503L	CATGCCCAGGGCC	.	43	9	77	0	.	68	T	145112137	C	T	145112137	2	4	19	1	0	0	0	0	0	0	0	1	10876	581	21	3		3	OPLAH	8	145112137	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	171783	145112137	1251885	57	2174											
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145634528	145634528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CPSF1	NM_013291	exon2	c.C15A	p.Y5X	CTGTTTGTACACG	.	30	8	42	0	.	91	T	145634528	G	T	145634528	4	4	19	1	0	0	0	0	0	1	0	0	3824	1372	48	3	4464	3	CPSF1	8	145634528	Nonsense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	522391	145634528	729494	58	2175											
CNTLN	54875	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	17409335	17409335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CNTLN	NM_017738	exon16	c.T2660C	p.I887T	CAATTATTGTAGA	.	295	20	234	1	.	91	C	17409335	T	C	17409335	3	2	19	1	0	0	0	0	1	0	0	0	3639	1493	52	2	2752	2	CNTLN	9	17409335	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10		17409335	123804096	59	2176											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27190548	27190548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TEK	NM_000459	exon10	c.C1349G	p.A450G	TGAATGCCCCAAA	.	183	17	184	0	.	1584	G	27190548	C	G	27190548	3	3	19	1	0	0	0	0	1	0	0	0	15748	739	26	4	1387	4	TEK	9	27190548	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	9781213	27190548	114022883	60	2177											
WNK2	65268	hgsc.bcm.edu;broad.mit.edu	37	9	96021717	96021717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WNK2	NM_006648	exon11	c.C2887A	p.P963T	ACGCTGCCCCCTC	.	21	4	31	0	.	765	A	96021717	C	A	96021717	3	1	19	1	0	0	0	0	1	0	0	0	17375	739	26	3	2929	3	WNK2	9	96021717	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	68831169	96021717	45191714	61	2178											
GOLGA2	2801	hgsc.bcm.edu;mdanderson.org	37	9	131020812	131020812	+	Missense_Mutation	SNP	C	C	A	rs143073995	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GOLGA2	NM_004486	exon21	c.G2130T	p.E710D	CTCCTCCTCCTCA	.	42	8	32	0	C|0.990;A|0.010	91	A	131020812	C	A	131020812	3	1	19	1	0	0	0	0	1	0	0	0	6552	680	24	3	902	3	GOLGA2	9	131020812	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	34999095	131020812	10192619	62	2179											
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131256869	131256872	+	Frame_Shift_Del	DEL	TGAG	TGAG	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	TGAG	TGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ODF2	NM_153435	exon17	c.2025_2028del	p.675_676del	GCTGGCTGAGTGC	.	102	22	63	0	.	69	-	131256872	TGAG	-	131256869	7	5	19	1	0	1	0	1	0	0	0	0	10827	1567	55	0	1950	0	ODF2	9	131256869	Frame_Shift_Del	DEL	TGAG	TCGA-BD-A3EP-01A-11D-A22F-10	236057	131256869	9956562	63	2180											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135204112	135204112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SETX	NM_015046	exon10	c.T2873C	p.I958T	CTGTCTATCTGAG	.	206	29	173	0	.	93	G	135204112	A	G	135204112	3	3	19	1	0	0	0	0	1	0	0	0	14141	449	16	2	5228	2	SETX	9	135204112	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	3947243	135204112	6009319	64	2181											
CACNA1B	774	ucsc.edu;mdanderson.org	37	9	140991051	140991051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNA1B	NM_001243812	exon36	c.A5210G	p.D1737G	AATACGACCCGGC	.	83	8	69	2	.	138	G	140991051	A	G	140991051	3	3	19	1	0	0	0	0	1	0	0	0	2539	275	10	2	5352	2	CACNA1B	9	140991051	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	5786939	140991051	222380	65	2182											
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23393130	23393130	+	Missense_Mutation	SNP	C	C	G	rs201493683	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MSRB2	NM_012228	exon2	c.C176G	p.T59S	AACTAACCCCGGA	.	117	25	101	0	C|0.999;T|0.001	90	G	23393130	C	G	23393130	3	3	19	1	0	0	0	0	1	0	0	0	9888	507	18	4	182	4	MSRB2	10	23393130	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10		23393130	112141617	66	2183											
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	100013493	100013493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LOXL4	NM_032211	exon11	c.G1652A	p.R551H	AGCGGGCGGTCCT	.	37	5	39	0	.	230	T	100013493	C	T	100013493	3	4	19	1	0	0	0	0	1	0	0	0	8902	768	27	1	638	1	LOXL4	10	100013493	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	76620363	100013493	35521254	67	2184											
HPS1	3257	hgsc.bcm.edu;broad.mit.edu	37	10	100179909	100179909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HPS1	NM_000195	exon18	c.T1750C	p.S584P	TCAGAGACCAGAC	.	75	4	69	0	.	91	G	100179909	A	G	100179909	3	3	19	1	0	0	0	0	1	0	0	0	7339	275	10	2	364	2	HPS1	10	100179909	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	166416	100179909	35354838	68	2185											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104125298	104125298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GBF1	NM_001199378	exon18	c.A2251G	p.M751V	AAGAAGATGATTG	.	117	6	131	0	.	91	G	104125298	A	G	104125298	3	3	19	1	0	0	0	0	1	0	0	0	6271	333	12	2	2314	2	GBF1	10	104125298	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	3945389	104125298	31409449	69	2186											
PDCD4	27250	hgsc.bcm.edu;bcgsc.ca	37	10	112641040	112641040	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDCD4	NM_014456	exon3	c.T93C	p.A31A	AAATGCTGGGACT	.	91	4	92	0	.	291	C	112641040	T	C	112641040	2	2	19	1	0	0	0	0	0	0	0	1	11621	1567	55	2		2	PDCD4	10	112641040	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	8515742	112641040	22893707	70	2187											
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936238	4936238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR51G2	NM_001005238	exon1	c.T656G	p.I219S	AAGAGGATGAGCA	.	116	32	101	0	.	70	C	4936238	A	C	4936238	3	2	19	1	0	0	0	0	1	0	0	0	11099	333	12	5	292	5	OR51G2	11	4936238	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		4936238	130070278	71	2188											
OR51I1	390063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5462447	5462447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR51I1	NM_001005288	exon1	c.C298A	p.L100M	GGACCAGGCAAGC	.	139	37	89	0	.	69	T	5462447	G	T	5462447	3	4	19	1	0	0	0	0	1	0	0	0	11100	991	35	3	650	3	OR51I1	11	5462447	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	526209	5462447	129544069	72	2189											
AMPD3	272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10503698	10503698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AMPD3	NM_000480	exon4	c.G542T	p.R181L	ACCACCGCTTCCC	.	69	10	51	0	.	291	T	10503698	G	T	10503698	3	4	19	1	0	0	0	0	1	0	0	0	587	1087	38	1	576	1	AMPD3	11	10503698	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	5041251	10503698	124502818	73	2190											
C11orf74	119710	hgsc.bcm.edu;bcgsc.ca	37	11	36631742	36631742	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C11orf74	NM_138787	exon2	c.G89G	p.G30G	ATGAGCAAACATA	.	81	4	57	0	.	68	G	36631742	A	G	36631742	2	3	19	1	0	0	0	0	0	0	0	1	1662	130	5	2		2	C11orf74	11	36631742	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	26128044	36631742	98374774	74	2191											
MS4A6A	64231	hgsc.bcm.edu;bcgsc.ca	37	11	59947379	59947379	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MS4A6A	NM_001247999	exon4	c.T291C	p.A97A	GAAGGAAGCAGAT	.	121	5	95	0	.	90	G	59947379	A	G	59947379	2	3	19	1	0	0	0	0	0	0	0	1	9864	59	3	2		2	MS4A6A	11	59947379	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	23315637	59947379	75059137	75	2192											
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66982895	66982895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KDM2A	NM_012308	exon7	c.A571T	p.M191L	TTGGAGATGCAGT	.	81	18	66	0	.	661	T	66982895	A	T	66982895	3	4	19	1	0	0	0	0	1	0	0	0	8124	333	12	4	593	4	KDM2A	11	66982895	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	7035516	66982895	68023621	76	2193											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616495	92616495	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAT3	NM_001008781	exon23	c.C12873A	p.A4291A	CCCCGCCGTGTCA	.	25	10	36	0	.	73	A	92616495	C	A	92616495	2	1	19	1	0	0	0	0	0	0	0	1	5691	639	23	1		1	FAT3	11	92616495	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	25633600	92616495	42390021	77	2194											
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103027464	103027464	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DYNC2H1	NM_001377	exon26	c.A4092G	p.E1364E	AAAAGAACAGACA	.	81	4	67	0	.	68	G	103027464	A	G	103027464	2	3	19	1	0	0	0	0	0	0	0	1	4846	40	2	2		2	DYNC2H1	11	103027464	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	10410969	103027464	31979052	78	2195											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	113085206	113085206	+	Silent	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NCAM1	NM_001242608	exon9	c.T1032A	p.S344S	GACTTCTACCCGG	.	112	11	81	0	.	23	A	113085206	T	A	113085206	2	1	19	1	0	0	0	0	0	0	0	1	10202	1509	53	4		4	NCAM1	11	113085206	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	10057742	113085206	21921310	79	2196											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121058616	121058616	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TECTA	NM_005422	exon20	c.C6075T	p.T2025T	CGTCACCGTCTTT	.	89	24	93	0	.	225	T	121058616	C	T	121058616	2	4	19	1	0	0	0	0	0	0	0	1	15744	639	23	1		1	TECTA	11	121058616	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	7973410	121058616	13947900	80	2197											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123489856	123489856	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRAMD1B	NM_020716	exon19	c.2051delC	p.S684fs	TAGAGTCCCAACA	.	51	14	50	0	.	69	-	123489856	C	-	123489856	7	5	19	1	0	1	0	1	0	0	0	0	6748	855	30	0	2125	0	GRAMD1B	11	123489856	Frame_Shift_Del	DEL	C	TCGA-BD-A3EP-01A-11D-A22F-10	2431240	123489856	11516660	81	2198											
ACRV1	56	hgsc.bcm.edu;bcgsc.ca	37	11	125542541	125542541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACRV1	NM_001612	exon4	c.A745G	p.T249A	TCCTCGTTCCATG	.	88	4	76	0	.	90	C	125542541	T	C	125542541	3	2	19	1	0	0	0	0	1	0	0	0	172	1725	60	2	56	2	ACRV1	11	125542541	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	2052685	125542541	9463975	82	2199											
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132527021	132527021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OPCML	NM_002545	exon2	c.A361T	p.N121Y	GATGATTGTCTGT	.	243	54	175	0	.	93	A	132527021	T	A	132527021	3	1	19	1	0	0	0	0	1	0	0	0	10874	1812	63	4	700	4	OPCML	11	132527021	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	6984480	132527021	2479495	83	2200											
SLC38A2	54407	hgsc.bcm.edu;bcgsc.ca	37	12	46756927	46756927	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC38A2	NM_018976	exon13	c.A1056G	p.E352E	AACATGTTCTACA	.	75	4	64	0	.	226	C	46756927	T	C	46756927	2	2	19	1	0	0	0	0	0	0	0	1	14604	1739	60	2		2	SLC38A2	12	46756927	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10		46756927	87094968	84	2201											
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50281167	50281167	+	Splice_Site	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAIM2	NM_012306	exon12	c.801+2T>A	.	ACACTCACCAATG	.	47	10	32	0	.	230	T	50281167	A	T	50281167	5	4	19	1	0	0	0	0	0	0	1	0	5376	173	6	4	155	4	FAIM2	12	50281167	Splice_Site	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	3524240	50281167	83570728	85	2202											
AQP5	362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50357929	50357929	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AQP5	NM_001651	exon3	c.G583C	p.V195L	GCGGTGGTCATGA	.	107	15	82	0	.	90	C	50357929	G	C	50357929	3	2	19	1	0	0	0	0	1	0	0	0	829	1261	44	4	593	4	AQP5	12	50357929	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	76762	50357929	83493966	86	2203											
KRT86	3892	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52699516	52699516	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KRT86	NM_002284	exon6	c.G970T	p.E324X	ATCAACGAGCTGA	.	127	24	93	1	.	91	T	52699516	G	T	52699516	4	4	19	1	0	0	0	0	0	1	0	0	8500	1059	37	1	992	1	KRT86	12	52699516	Nonsense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	2341587	52699516	81152379	87	2204											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56088716	56088716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ITGA7	NM_001144996	exon15	c.G2054A	p.G685E	GGCTGCCCACTCA	.	61	6	49	0	.	229	T	56088716	C	T	56088716	3	4	19	1	0	0	0	0	1	0	0	0	7881	623	22	3	1415	3	ITGA7	12	56088716	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	3389200	56088716	77763179	88	2205											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57577928	57577928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRP1	NM_002332	exon37	c.C5990T	p.S1997F	ATGGCTCCTTCCG	.	104	12	74	0	.	596	T	57577928	C	T	57577928	3	4	19	1	0	0	0	0	1	0	0	0	8951	855	30	3	6136	3	LRP1	12	57577928	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	1489212	57577928	76273967	89	2206											
USP30	84749	hgsc.bcm.edu;bcgsc.ca	37	12	109519740	109519740	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	USP30	NM_032663	exon9	c.T783C	p.G261G	GTAGGGTCACCCA	.	155	7	94	0	.	658	C	109519740	T	C	109519740	2	2	19	1	0	0	0	0	0	0	0	1	17058	1654	58	2		2	USP30	12	109519740	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	51941812	109519740	24332155	90	2207											
PHF11	51131	hgsc.bcm.edu;bcgsc.ca	37	13	50080776	50080776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PHF11	NM_001040443	exon2	c.T100C	p.F34L	GGTGTCTTTCAGG	.	54	4	45	0	.	90	C	50080776	T	C	50080776	3	2	19	1	0	0	0	0	1	0	0	0	11822	1609	56	2	106	2	PHF11	13	50080776	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10		50080776	65089102	91	2208											
SCFD1	23256	hgsc.bcm.edu;bcgsc.ca	37	14	31107344	31107345	+	Frame_Shift_Ins	INS	-	-	ACTAT	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCFD1	NM_016106	exon5	c.326_327insACTAT	p.Q109fs	GAAATCAACTATA	.	206	50	151	1	.	226	ACTAT	31107345	-	ACTAT	31107344	7	5	19	1	0	1	1	0	0	0	0	0	13889	130	5	0	344	0	SCFD1	14	31107344	Frame_Shift_Ins	INS	-	TCGA-BD-A3EP-01A-11D-A22F-10		31107344	76242196	92	2209											
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35577440	35577440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PPP2R3C	NM_017917	exon5	c.A407T	p.Q136L	AAAAATTGCCTAA	.	102	17	53	0	.	227	A	35577440	T	A	35577440	3	1	19	1	0	0	0	0	1	0	0	0	12390	1812	63	4	990	4	PPP2R3C	14	35577440	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	4470096	35577440	71772100	93	2210											
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	50923302	50923302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MAP4K5	NM_006575	exon14	c.T947C	p.I316T	CGAATGATTGCAT	.	127	7	64	0	.	546	G	50923302	A	G	50923302	3	3	19	1	0	0	0	0	1	0	0	0	9263	333	12	2	1669	2	MAP4K5	14	50923302	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	15345862	50923302	56426238	94	2211											
WDHD1	11169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55467661	55467661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDHD1	NM_007086	exon9	c.G743A	p.G248D	ATACTACCTGCAG	.	306	128	207	0	.	91	T	55467661	C	T	55467661	3	4	19	1	0	0	0	0	1	0	0	0	17268	507	18	3	2718	3	WDHD1	14	55467661	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	4544359	55467661	51881879	95	2212											
SNAPC1	6617	hgsc.bcm.edu;bcgsc.ca	37	14	62233751	62233751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNAPC1	NM_003082	exon2	c.A286G	p.K96E	AAACAAAAGGTAA	.	86	4	97	0	.	90	G	62233751	A	G	62233751	3	3	19	1	0	0	0	0	1	0	0	0	14834	15	1	2	292	2	SNAPC1	14	62233751	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	6766090	62233751	45115789	96	2213											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95556981	95556981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DICER1	NM_030621	exon28	c.G5623A	p.D1875N	TCCCGTCGTAAGT	.	326	118	211	0	.	961	T	95556981	C	T	95556981	3	4	19	1	0	0	0	0	1	0	0	0	4521	884	31	1	149	1	DICER1	14	95556981	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	33323230	95556981	11792559	97	2214											
GPR132	29933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105517685	105517686	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR132	NM_013345	exon4	c.789_790insA	p.L263fs	TTTGACGAGGAGA	.	193	39	59	0	.	92	T	105517686	-	T	105517685	7	5	19	1	0	1	1	0	0	0	0	0	6642	1045	37	0	357	0	GPR132	14	105517685	Frame_Shift_Ins	INS	-	TCGA-BD-A3EP-01A-11D-A22F-10	9960704	105517685	1831855	98	2215	15	2									
GPR132	29933	hgsc.bcm.edu;bcgsc.ca	37	14	105517686	105517686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR132	NM_013345	exon4	c.T788A	p.L263H	TTGACGAGGAGAA	.	193	41	59	0	.	92	T	105517686	A	T	105517686	3	4	19	1	0	0	0	0	1	0	0	0	6642	304	11	4	358	4	GPR132	14	105517686	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	1	105517686	1831854	99	2216	15	2									
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105716119	105716119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BTBD6	NM_033271	exon5	c.G568A	p.V190I	GCCTGCGTCCTGC	.	99	31	50	0	.	90	A	105716119	G	A	105716119	3	1	19	1	0	0	0	0	1	0	0	0	1545	1145	40	1	582	1	BTBD6	14	105716119	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	198433	105716119	1633421	100	2217											
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42556385	42556385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMEM87A	NM_001110503	exon4	c.T308G	p.L103W	AAATACAACTCTA	.	220	69	211	0	.	91	C	42556385	A	C	42556385	3	2	19	1	0	0	0	0	1	0	0	0	16207	131	5	5	1473	5	TMEM87A	15	42556385	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		42556385	59975007	101	2218											
IGDCC3	9543	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	65621829	65621829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IGDCC3	NM_004884	exon13	c.C2104T	p.R702W	GGCCCCGCTGTCC	.	39	6	28	1	.	93	A	65621829	G	A	65621829	3	1	19	1	0	0	0	0	1	0	0	0	7568	1086	38	1	348	1	IGDCC3	15	65621829	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	23065444	65621829	36909563	102	2219											
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81625157	81625157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMC3	NM_001080532	exon22	c.C2906A	p.A969D	TGAGGAGCCCGAC	.	72	18	47	0	.	70	T	81625157	G	T	81625157	3	4	19	1	0	0	0	0	1	0	0	0	15983	971	34	3	400	3	TMC3	15	81625157	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	16003328	81625157	20906235	103	2220											
ERCC4	2072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14041704	14041704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ERCC4	NM_005236	exon11	c.T2251C	p.Y751H	TCCCGCTACTACA	.	85	33	82	1	.	665	C	14041704	T	C	14041704	3	2	19	1	0	0	0	0	1	0	0	0	5215	1522	53	2	2293	2	ERCC4	16	14041704	Missense_Mutation	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10		14041704	76313049	104	2221											
SULT1A2	6799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28606943	28606943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SULT1A2	NM_001054	exon3	c.G202A	p.E68K	ACTTTTCCAGGTC	.	121	47	99	0	.	90	T	28606943	C	T	28606943	3	4	19	1	0	0	0	0	1	0	0	0	15372	864	30	3	709	3	SULT1A2	16	28606943	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	14565239	28606943	61747810	105	2222											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30750366	30750366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SRCAP	NM_006662	exon34	c.C9005G	p.P3002R	CGTCCCCACCCAA	.	84	6	54	0	.	94	G	30750366	C	G	30750366	3	3	19	1	0	0	0	0	1	0	0	0	15134	594	21	4	9131	4	SRCAP	16	30750366	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	2143423	30750366	59604387	106	2223											
CLEC18B	497190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	74452060	74452060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CLEC18B	NM_001011880	exon3	c.C353G	p.A118G	AAGGACGCCAAGC	.	300	79	403	2	.	90	C	74452060	G	C	74452060	3	2	19	1	0	0	0	0	1	0	0	0	3503	1087	38	4	1058	4	CLEC18B	16	74452060	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	43701694	74452060	15902693	107	2224											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578478	7578478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C452A	p.P151H	GGCGGGGGTGTGG	.	68	17	61	0	.	70225	T	7578478	G	T	7578478	3	4	19	1	0	0	0	0	1	0	0	0	16378	1232	43	3	846	3	TP53	17	7578478	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10		7578478	73616732	108	2225											
MYH10	4628	hgsc.bcm.edu;bcgsc.ca	37	17	8480586	8480586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYH10	NM_005964	exon5	c.T601C	p.S201P	TATGTGAAGAAGC	.	87	4	89	0	.	92	G	8480586	A	G	8480586	3	3	19	1	0	0	0	0	1	0	0	0	10030	246	9	2	5477	2	MYH10	17	8480586	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	902108	8480586	72714624	109	2226											
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37341067	37341067	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNB1	NM_199247	exon8	c.C834A	p.I278I	CACCAGGATGATG	.	131	23	89	0	.	154	T	37341067	G	T	37341067	2	4	19	1	0	0	0	0	0	0	0	1	2552	1164	41	3		3	CACNB1	17	37341067	Silent	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	28860481	37341067	43854143	110	2227											
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45914305	45914305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRRC46	NM_033413	exon8	c.C785T	p.P262L	CAGTCCCTGAGGC	.	114	6	86	0	.	91	T	45914305	C	T	45914305	3	4	19	1	0	0	0	0	1	0	0	0	9003	681	24	3	815	3	LRRC46	17	45914305	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	8573238	45914305	35280905	111	2228											
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48603556	48603556	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYCBPAP	NM_032133	exon14	c.C2226T	p.S742S	GGACAGCACCAAG	.	65	22	55	0	.	230	T	48603556	C	T	48603556	2	4	19	1	0	0	0	0	0	0	0	1	10019	709	25	3		3	MYCBPAP	17	48603556	Silent	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	2689251	48603556	32591654	112	2229											
ABCA10	10349	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67183861	67183861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ABCA10	NM_080282	exon20	c.T2291A	p.F764Y	TTTAAGAAGCGAA	.	162	35	147	1	.	93	T	67183861	A	T	67183861	3	4	19	1	0	0	0	0	1	0	0	0	29	246	9	4	2424	4	ABCA10	17	67183861	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	18580305	67183861	14011349	113	2230											
RAB37	326624	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72741039	72741039	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RAB37	NM_001163989	exon7	c.C475G	p.R159G	GTGATCCGTTCCG	.	150	38	122	2	.	230	G	72741039	C	G	72741039	3	3	19	1	0	0	0	0	1	0	0	0	12927	652	23	4	789	4	RAB37	17	72741039	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	5557178	72741039	8454171	114	2231											
TBCD	6904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80888501	80888501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TBCD	NM_005993	exon33	c.A3095G	p.D1032G	TTGAGGACAACCT	.	107	23	83	1	.	22	G	80888501	A	G	80888501	3	3	19	1	0	0	0	0	1	0	0	0	15630	275	10	2	3225	2	TBCD	17	80888501	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	8147462	80888501	306709	115	2232											
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8384641	8384641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTPRM	NM_001105244	exon30	c.A4001G	p.E1334G	TGGAAGAGGACAT	.	128	6	94	0	.	228	G	8384641	A	G	8384641	3	3	19	1	0	0	0	0	1	0	0	0	12806	304	11	2	4119	2	PTPRM	18	8384641	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		8384641	69692607	116	2233											
LPPR3	0	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	814544	814544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_024888	exon6	c.T805C	p.F269L	TGGCAAAGGCGAA	.	32	4	32	0	.	.	G	814544	A	G	814544	3	3	19	1	0	0	0	0	1	0	0	0	8926	72	3	2	1443	2	LPPR3	19	814544	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		814544	58314439	117	2234											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	18266738	18266738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PIK3R2	NM_005027	exon2	c.C49T	p.R17W	TTCCGCCGGGAGC	.	16	7	17	0	.	1311	T	18266738	C	T	18266738	3	4	19	1	0	0	0	0	1	0	0	0	11919	643	23	1	51	1	PIK3R2	19	18266738	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	17452194	18266738	40862245	118	2235											
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720474	21720474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF429	NM_001001415	exon4	c.A1619T	p.E540V	AATGTGAAGAATG	.	42	10	32	0	.	516	T	21720474	A	T	21720474	3	4	19	1	0	0	0	0	1	0	0	0	17899	246	9	4	1633	4	ZNF429	19	21720474	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	3453736	21720474	37408509	119	2236											
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	32873386	32873386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF507	NM_001136156	exon6	c.G2374C	p.G792R	CTGTGTGGGTATG	.	196	37	178	0	.	230	C	32873386	G	C	32873386	3	2	19	1	0	0	0	0	1	0	0	0	17950	1348	47	4	2388	4	ZNF507	19	32873386	Missense_Mutation	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	11152912	32873386	26255597	120	2237											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57334962	57334962	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PEG3	NM_001146184	exon4	c.C480T	p.F160F	ACCACTGAAAGAA	.	70	15	47	0	.	164	A	57334962	G	A	57334962	2	1	19	1	0	0	0	0	0	0	0	1	11720	1304	45	3		3	PEG3	19	57334962	Silent	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	24461576	57334962	1794021	121	2238											
DEFB128	245939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	168643	168643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DEFB128	NM_001037732	exon2	c.G166A	p.D56N	CTTCATCATTAGC	.	459	108	321	2	.	135	T	168643	C	T	168643	3	4	19	1	0	0	0	0	1	0	0	0	4414	826	29	3	119	3	DEFB128	20	168643	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10		168643	62856877	122	2239											
DOK5	55816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	53226977	53226977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DOK5	NM_018431	exon6	c.A650C	p.E217A	ACGGGGAGGCCAT	.	171	20	143	0	.	227	C	53226977	A	C	53226977	3	2	19	1	0	0	0	0	1	0	0	0	4700	304	11	5	672	5	DOK5	20	53226977	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	53058334	53226977	9798543	123	2240											
ADAMTS1	9510	hgsc.bcm.edu;bcgsc.ca	37	21	28212774	28212774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ADAMTS1	NM_006988	exon5	c.T1486C	p.S496P	GTTTGGAGTCCTC	.	70	4	64	0	.	272	G	28212774	A	G	28212774	3	3	19	1	0	0	0	0	1	0	0	0	255	304	11	2	1437	2	ADAMTS1	21	28212774	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		28212774	19917121	124	2241											
MICAL3	57553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18299504	18299504	+	Silent	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MICAL3	NM_015241	exon27	c.C5397G	p.L1799L	GCTGGAGAGGTCT	.	31	14	23	1	.	68	C	18299504	G	C	18299504	2	2	19	1	0	0	0	0	0	0	0	1	9571	929	33	4		4	MICAL3	22	18299504	Silent	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10		18299504	33005062	125	2242											
SNAP29	9342	hgsc.bcm.edu;bcgsc.ca	37	22	21235343	21235343	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNAP29	NM_004782	exon3	c.A441G	p.K147K	ATTGAAAGAAGCT	.	84	4	101	0	.	278	G	21235343	A	G	21235343	2	3	19	1	0	0	0	0	0	0	0	1	14831	69	3	2		2	SNAP29	22	21235343	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	2935839	21235343	30069223	126	2243											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46794440	46794440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CELSR1	NM_014246	exon11	c.G5507T	p.G1836V	CGGAATCCACGGC	.	71	22	97	0	.	525	A	46794440	C	A	46794440	3	1	19	1	0	0	0	0	1	0	0	0	3221	855	30	3	3637	3	CELSR1	22	46794440	Missense_Mutation	SNP	C	TCGA-BD-A3EP-01A-11D-A22F-10	25559097	46794440	4510126	127	2244											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3241431	3241431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MXRA5	NM_015419	exon5	c.T2295A	p.F765L	AGATTCAAACACT	.	210	81	280	0	.	136	T	3241431	A	T	3241431	3	4	19	1	0	0	0	0	1	0	0	0	10003	127	5	4	6203	4	MXRA5	23	3241431	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10		3241431	152029129	128	2245											
KCND1	3750	hgsc.bcm.edu;bcgsc.ca	37	X	48823420	48823420	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCND1	NM_004979	exon2	c.A1215G	p.P405P	AATGACTGGCACA	.	88	6	82	0	.	133	C	48823420	T	C	48823420	2	2	19	1	0	0	0	0	0	0	0	1	8018	1567	55	2		2	KCND1	23	48823420	Silent	SNP	T	TCGA-BD-A3EP-01A-11D-A22F-10	45581989	48823420	106447140	129	2246											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70607151	70607151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TAF1	NM_004606	exon15	c.A2327G	p.H776R	ATCTTCATAAGAT	.	235	86	256	0	.	900	G	70607151	A	G	70607151	3	3	19	1	0	0	0	0	1	0	0	0	15510	217	8	2	2385	2	TAF1	23	70607151	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	21783731	70607151	84663409	130	2247											
GLA	2717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100658874	100658874	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GLA	NM_000169	exon2	c.C294A	p.P98P	TCTTTGGGGAGCC	.	99	36	135	0	.	130	T	100658874	G	T	100658874	2	4	19	1	0	0	0	0	0	0	0	1	6426	1219	43	3		3	GLA	23	100658874	Silent	SNP	G	TCGA-BD-A3EP-01A-11D-A22F-10	30051723	100658874	54611686	131	2248											
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150884642	150884642	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FATE1	NM_033085	exon1	c.A51G	p.A17A	CCTGGCAGAAGAA	.	146	39	175	0	.	131	G	150884642	A	G	150884642	2	3	19	1	0	0	0	0	0	0	0	1	5693	175	7	2		2	FATE1	23	150884642	Silent	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	50225768	150884642	4385918	132	2249											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151815446	151815446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GABRQ	NM_018558	exon4	c.A344C	p.K115T	CTTGGAAAGATTC	.	149	61	179	0	.	133	C	151815446	A	C	151815446	3	2	19	1	0	0	0	0	1	0	0	0	6175	14	1	5	358	5	GABRQ	23	151815446	Missense_Mutation	SNP	A	TCGA-BD-A3EP-01A-11D-A22F-10	930804	151815446	3455114	133	2250											
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12069707	12069707	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MFN2	NM_014874	exon18	c.C2128G	p.L710V	GAGAACCTGGAGC	.	95	13	182	0	.	91	G	12069707	C	G	12069707	3	3	20	1	0	0	0	0	1	0	0	0	9524	680	24	4	2190	4	MFN2	1	12069707	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		12069707	237180914	1	2251											
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20474797	20474797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLA2G2F	NM_022819	exon5	c.A539G	p.Y180C	ATGTCTACTGCCA	.	119	40	318	0	.	91	G	20474797	A	G	20474797	3	3	20	1	0	0	0	0	1	0	0	0	11999	391	14	2	557	2	PLA2G2F	1	20474797	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	8405090	20474797	228775824	2	2252											
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35857909	35857909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZMYM4	NM_005095	exon16	c.C2684A	p.A895D	CAAGTGCCCCTGC	.	226	95	225	0	.	291	A	35857909	C	A	35857909	3	1	20	1	0	0	0	0	1	0	0	0	17699	739	26	3	2746	3	ZMYM4	1	35857909	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	15383112	35857909	213392712	3	2253											
GJA9	81025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39340262	39340262	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GJA9	NM_030772	exon2	c.T1509C	p.N503N	AATGAGATTGTTC	.	142	62	133	0	.	22	G	39340262	A	G	39340262	2	3	20	1	0	0	0	0	0	0	0	1	6406	330	12	2		2	GJA9	1	39340262	Silent	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	3482353	39340262	209910359	4	2254											
PRKAA2	5563	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	57173335	57173335	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PRKAA2	NM_006252	exon9	c.C1608A	p.T536T	TCACACCATGGAT	.	158	40	148	1	.	885	A	57173335	C	A	57173335	2	1	20	1	0	0	0	0	0	0	0	1	12494	581	21	3		3	PRKAA2	1	57173335	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	17833073	57173335	192077286	5	2255											
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60505838	60505838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C1orf87	NM_152377	exon5	c.C498A	p.S166R	ACTTGGGCTCTGG	.	87	44	56	0	.	154	T	60505838	G	T	60505838	3	4	20	1	0	0	0	0	1	0	0	0	2064	1194	42	3	1174	3	C1orf87	1	60505838	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	3332503	60505838	188744783	6	2256											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62267337	62267337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	INADL	NM_176877	exon12	c.C1445G	p.T482S	TTCTAACTGGAGC	.	261	47	194	0	.	94	G	62267337	C	G	62267337	3	3	20	1	0	0	0	0	1	0	0	0	7731	565	20	4	1487	4	INADL	1	62267337	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	1761499	62267337	186983284	7	2257											
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65139104	65139104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CACHD1	NM_020925	exon19	c.A2531G	p.D844G	TCAGTGACAGAAC	.	169	18	166	0	.	92	G	65139104	A	G	65139104	3	3	20	1	0	0	0	0	1	0	0	0	2537	275	10	2	2605	2	CACHD1	1	65139104	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	2871767	65139104	184111517	8	2258											
CYB561D1	284613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110038869	110038871	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYB561D1	NM_001134400	exon3	c.744_746del	p.248_249del	GAAGAAAATGGAA	.	128	45	204	0	.	90	-	110038871	AAT	-	110038869	7	5	20	1	0	1	0	1	0	0	0	0	4120	11	1	0	873	0	CYB561D1	1	110038869	In_Frame_Del	DEL	AAT	TCGA-BW-A5NO-01A-11D-A27I-10	44899765	110038869	139211752	9	2259											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150900277	150900277	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SETDB1	NM_012432	exon2	c.G87A	p.V29V	GGCAGTGGTTGAG	.	378	32	322	0	.	228	A	150900277	G	A	150900277	2	1	20	1	0	0	0	0	0	0	0	1	14138	1335	47	3		3	SETDB1	1	150900277	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	40861408	150900277	98350344	10	2260											
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152283189	152283189	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FLG	NM_002016	exon3	c.T4173C	p.S1391S	ACTACCACTGGAC	.	183	61	205	1	.	106	G	152283189	A	G	152283189	2	3	20	1	0	0	0	0	0	0	0	1	5922	156	6	2		2	FLG	1	152283189	Silent	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	1382912	152283189	96967432	11	2261											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207791472	207791472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CR1	NM_000651	exon42	c.C6946A	p.L2316I	GTATCTCTATATC	.	212	87	293	0	.	93	A	207791472	C	A	207791472	3	1	20	1	0	0	0	0	1	0	0	0	3840	912	32	3	7112	3	CR1	1	207791472	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	55508283	207791472	41459149	12	2262											
CR1L	1379	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207870921	207870921	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CR1L	NM_175710	exon6	c.G936A	p.Q312Q	CGGGCAGGAAGTG	.	421	58	516	1	.	46	A	207870921	G	A	207870921	2	1	20	1	0	0	0	0	0	0	0	1	3841	991	35	3		3	CR1L	1	207870921	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	79449	207870921	41379700	13	2263											
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220307815	220307816	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IARS2	NM_018060	exon15	c.1909_1910del	p.637_637del	TCCTTATTAACAA	.	120	48	126	0	.	94	-	220307816	TT	-	220307815	7	5	20	1	0	1	0	1	0	0	0	0	7474	1490	52	0	1967	0	IARS2	1	220307815	Frame_Shift_Del	DEL	TT	TCGA-BW-A5NO-01A-11D-A27I-10	12436894	220307815	28942806	14	2264											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	141055500	141055500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRP1B	NM_018557	exon84	c.C12844A	p.P4282T	AGTTTGGCCCAGT	.	257	24	361	0	.	311	T	141055500	G	T	141055500	3	4	20	1	0	0	0	0	1	0	0	0	8955	1203	42	3	987	3	LRP1B	2	141055500	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		141055500	102143873	15	2265											
LYPD6	130574	broad.mit.edu;bcgsc.ca	37	2	150294299	150294299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LYPD6	NM_194317	exon2	c.G77A	p.R26Q	AGTCCCGAGACTT	.	56	35	132	1	.	90	A	150294299	G	A	150294299	3	1	20	1	0	0	0	0	1	0	0	0	9114	1058	37	1	79	1	LYPD6	2	150294299	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	9238799	150294299	92905074	16	2266											
TBR1	10716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162276744	162276744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TBR1	NM_006593	exon5	c.A1166T	p.K389I	TTGCAAAAGGATT	.	127	70	130	0	.	91	T	162276744	A	T	162276744	3	4	20	1	0	0	0	0	1	0	0	0	15644	14	1	4	1184	4	TBR1	2	162276744	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	11982445	162276744	80922629	17	2267											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162807235	162807235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC4A10	NM_001178015	exon19	c.A2418T	p.L806F	GCCTTTAGGTCCA	.	167	32	160	0	.	229	T	162807235	A	T	162807235	3	4	20	1	0	0	0	0	1	0	0	0	14651	417	15	4	2577	4	SLC4A10	2	162807235	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	530491	162807235	80392138	18	2268											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168105466	168105466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	XIRP2	NM_152381	exon9	c.C7564A	p.H2522N	AAATCTCATTCAT	.	93	49	95	0	.	104	A	168105466	C	A	168105466	3	1	20	1	0	0	0	0	1	0	0	0	17427	826	29	3	7594	3	XIRP2	2	168105466	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	5298231	168105466	75093907	19	2269											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179404631	179404631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TTN	NM_001267550	exon352	c.G98161A	p.V32721I	TGATGACGCCACC	.	127	55	172	0	.	636	T	179404631	C	T	179404631	3	4	20	1	0	0	0	0	1	0	0	0	16732	536	19	1	9862	1	TTN	2	179404631	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	11299165	179404631	63794742	20	2270											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179596523	179596523	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TTN	NM_001267550	exon58	c.C17079T	p.S5693S	CTGCAGGCTAACC	.	111	24	134	0	.	636	A	179596523	G	A	179596523	2	1	20	1	0	0	0	0	0	0	0	1	16732	1194	42	3		3	TTN	2	179596523	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	191892	179596523	63602850	21	2271											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179718305	179718305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CCDC141	NM_173648	exon20	c.G3107A	p.G1036E	TATTTTCCAACTC	.	57	12	50	0	.	78	T	179718305	C	T	179718305	3	4	20	1	0	0	0	0	1	0	0	0	2775	855	30	3	1261	3	CCDC141	2	179718305	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	121782	179718305	63481068	22	2272											
SSFA2	6744	broad.mit.edu;bcgsc.ca	37	2	182780658	182780658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SSFA2	NM_001130445	exon11	c.C2291A	p.T764N	AAGAGACCAGATG	.	118	6	131	1	.	153	A	182780658	C	A	182780658	3	1	20	1	0	0	0	0	1	0	0	0	15182	507	18	3	2333	3	SSFA2	2	182780658	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	3062353	182780658	60418715	23	2273											
SGOL2	151246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201437093	201437093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SGOL2	NM_001160046	exon7	c.G2024A	p.R675K	CTACTAGAGATAA	.	162	16	181	1	.	94	A	201437093	G	A	201437093	3	1	20	1	0	0	0	0	1	0	0	0	14217	942	33	3	2046	3	SGOL2	2	201437093	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	18656435	201437093	41762280	24	2274											
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207527925	207527925	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DYTN	NM_001093730	exon11	c.T1335C	p.N445N	CTCTGCATTTGTG	.	165	44	229	0	.	23	G	207527925	A	G	207527925	2	3	20	1	0	0	0	0	0	0	0	1	4861	214	8	2		2	DYTN	2	207527925	Silent	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	6090832	207527925	35671448	25	2275											
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	214727353	214727353	+	Splice_Site	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SPAG16	NM_024532	exon11	c.1214+1G>T	.	TCCCAGGTCAGTG	.	85	11	160	0	.	188	T	214727353	G	T	214727353	5	4	20	1	0	0	0	0	0	0	1	0	14978	1275	44	3	1273	3	SPAG16	2	214727353	Splice_Site	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	7199428	214727353	28472020	26	2276											
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219679131	219679131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYP27A1	NM_000784	exon7	c.C1213T	p.R405W	AACTCCCGGATCA	.	84	11	136	0	.	91	T	219679131	C	T	219679131	3	4	20	1	0	0	0	0	1	0	0	0	4158	643	23	1	1239	1	CYP27A1	2	219679131	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	4951778	219679131	23520242	27	2277											
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9712791	9712791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MTMR14	NM_022485	exon6	c.614delA	p.Y205fs	TTCGATACCTGTC	.	146	66	150	0	.	91	-	9712791	A	-	9712791	7	5	20	1	0	1	0	1	0	0	0	0	9942	391	14	0	636	0	MTMR14	3	9712791	Frame_Shift_Del	DEL	A	TCGA-BW-A5NO-01A-11D-A27I-10		9712791	188309639	28	2278											
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56183107	56183107	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ERC2	NM_015576	exon5	c.C1203T	p.I401I	CATCTGGATCTCA	.	173	60	179	0	.	24	A	56183107	G	A	56183107	2	1	20	1	0	0	0	0	0	0	0	1	5211	1164	41	3		3	ERC2	3	56183107	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	46470316	56183107	141839323	29	2279											
PDZRN3	23024	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	73651611	73651611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PDZRN3	NM_015009	exon3	c.A812G	p.D271G	TGGTTATCCTTTG	.	130	19	140	2	.	232	C	73651611	T	C	73651611	3	2	20	1	0	0	0	0	1	0	0	0	11709	1449	50	2	2420	2	PDZRN3	3	73651611	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	17468504	73651611	124370819	30	2280											
LSAMP	4045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	115805264	115805264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LSAMP	NM_002338	exon2	c.C295G	p.Q99E	CCTTCTGGATTCG	.	270	105	321	0	.	90	C	115805264	G	C	115805264	3	2	20	1	0	0	0	0	1	0	0	0	9048	1357	47	4	745	4	LSAMP	3	115805264	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	42153653	115805264	82217166	31	2281											
ADPRH	141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119306692	119306692	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADPRH	NM_001125	exon5	c.C1041A	p.L347L	TTCTCTCGGGTCA	.	62	32	53	0	.	91	A	119306692	C	A	119306692	2	1	20	1	0	0	0	0	0	0	0	1	331	871	31	1		1	ADPRH	3	119306692	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	3501428	119306692	78715738	32	2282											
ACPP	55	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132075565	132075565	+	Missense_Mutation	SNP	C	C	T	rs148218296	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACPP	NM_001099	exon10	c.C1004T	p.T335M	ATGAGACGCAGCA	.	104	38	156	1	C|0.999;T|0.001	91	T	132075565	C	T	132075565	3	4	20	1	0	0	0	0	1	0	0	0	167	536	19	1	1042	1	ACPP	3	132075565	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	12768873	132075565	65946865	33	2283											
AADACL2	344752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151475327	151475327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	AADACL2	NM_207365	exon5	c.G1151A	p.R384H	ATTTACGTCTAGG	.	148	16	144	0	.	90	A	151475327	G	A	151475327	3	1	20	1	0	0	0	0	1	0	0	0	11	1145	40	1	1169	1	AADACL2	3	151475327	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	19399762	151475327	46547103	34	2284											
GHSR	2693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172162985	172162985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GHSR	NM_198407	exon2	c.C1067A	p.S356Y	GCCCGAGAACTTT	.	193	31	93	0	.	501	T	172162985	G	T	172162985	3	4	20	1	0	0	0	0	1	0	0	0	6375	942	33	3	37	3	GHSR	3	172162985	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	20687658	172162985	25859445	35	2285											
DNAJC19	131118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180706002	180706002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DNAJC19	NM_145261	exon2	c.G19T	p.A7S	CAACTGCTACCAC	.	217	24	250	0	.	226	A	180706002	C	A	180706002	3	1	20	1	0	0	0	0	1	0	0	0	4638	797	28	3	351	3	DNAJC19	3	180706002	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	8543017	180706002	17316428	36	2286											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	39439384	39439384	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	KLB	NM_175737	exon3	c.T1374C	p.T458T	TTATACTGCCTGG	.	123	11	155	0	.	69	C	39439384	T	C	39439384	2	2	20	1	0	0	0	0	0	0	0	1	8332	1567	55	2		2	KLB	4	39439384	Silent	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10		39439384	151714892	37	2287											
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54256750	54256750	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FIP1L1	NM_030917	exon7	c.G460C	p.E154Q	CTCTTAGAGGTAG	.	61	11	57	0	.	1083	C	54256750	G	C	54256750	3	2	20	1	0	0	0	0	1	0	0	0	5896	943	33	4	486	4	FIP1L1	4	54256750	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	14817366	54256750	136897526	38	2288											
SRP72	6731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57344756	57344756	+	Splice_Site	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SRP72	NM_006947	exon8	c.768-2A>G	.	GTTCACAGACCAA	.	226	93	374	2	.	116	G	57344756	A	G	57344756	5	3	20	1	0	0	0	0	0	0	1	0	15156	202	7	2	796	2	SRP72	4	57344756	Splice_Site	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	3088006	57344756	133809520	39	2289											
UBA6	55236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68497490	68497490	+	Splice_Site	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	UBA6	NM_018227	exon26	c.2195-1G>T	.	ATAAACCTGGCAA	.	137	45	123	1	.	90	A	68497490	C	A	68497490	5	1	20	1	0	0	0	0	0	0	1	0	16829	695	24	3	1000	3	UBA6	4	68497490	Splice_Site	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	11152734	68497490	122656786	40	2290											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104065713	104065713	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CENPE	NM_001813	exon33	c.G4920A	p.Q1640Q	TTTCTCCTGAGTC	.	37	21	40	0	.	277	T	104065713	C	T	104065713	2	4	20	1	0	0	0	0	0	0	0	1	3230	680	24	3		3	CENPE	4	104065713	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	35568223	104065713	87088563	41	2291											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	115754838	115754838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NDST4	NM_022569	exon12	c.G2320C	p.D774H	CTGGGTCAGATCT	.	104	9	192	0	.	94	G	115754838	C	G	115754838	3	3	20	1	0	0	0	0	1	0	0	0	10258	826	29	4	310	4	NDST4	4	115754838	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	11689125	115754838	75399438	42	2292											
HHIP	64399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145567924	145567924	+	Missense_Mutation	SNP	G	G	A	rs199961348		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HHIP	NM_022475	exon1	c.G97A	p.G33R	GGGAGCGGAGCAA	.	43	18	207	0	.	283	A	145567924	G	A	145567924	3	1	20	1	0	0	0	0	1	0	0	0	7092	1117	39	1	99	1	HHIP	4	145567924	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	29813086	145567924	45586352	43	2293											
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160262813	160262813	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAPGEF2	NM_014247	exon14	c.A2149T	p.S717C	CAGCTCAGCACTG	.	172	45	257	0	.	637	T	160262813	A	T	160262813	3	4	20	1	0	0	0	0	1	0	0	0	13044	188	7	4	2203	4	RAPGEF2	4	160262813	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	14694889	160262813	30891463	44	2294											
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	7867391	7867391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FASTKD3	NM_024091	exon2	c.A806T	p.K269I	TCCACTTTTTCAG	.	33	5	18	0	.	156	A	7867391	T	A	7867391	3	1	20	1	0	0	0	0	1	0	0	0	5687	1841	64	4	1206	4	FASTKD3	5	7867391	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10		7867391	173047869	45	2295											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13871081	13871081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DNAH5	NM_001369	exon24	c.C3629T	p.T1210I	GCCTTTGTCTCAG	.	235	100	325	0	.	182	A	13871081	G	A	13871081	3	1	20	1	0	0	0	0	1	0	0	0	4604	1377	48	3	10469	3	DNAH5	5	13871081	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	6003690	13871081	167044179	46	2296											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	26902658	26902658	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CDH9	NM_016279	exon7	c.G1180T	p.E394X	CATCTTCATCTAC	.	83	45	73	0	.	99	A	26902658	C	A	26902658	4	1	20	1	0	0	0	0	0	1	0	0	3117	835	29	3	1213	3	CDH9	5	26902658	Nonsense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	13031577	26902658	154012602	47	2297											
EMB	133418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	49699137	49699137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EMB	NM_198449	exon6	c.A752T	p.E251V	ACAAGCTCAATGT	.	269	85	378	0	.	90	A	49699137	T	A	49699137	3	1	20	1	0	0	0	0	1	0	0	0	5085	1551	54	4	247	4	EMB	5	49699137	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	22796479	49699137	131216123	48	2298											
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	81548458	81548458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ATG10	NM_001131028	exon7	c.G531T	p.K177N	ATTAAAGAATTCT	.	102	21	128	0	.	90	T	81548458	G	T	81548458	3	4	20	1	0	0	0	0	1	0	0	0	1089	933	33	3	549	3	ATG10	5	81548458	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	31849321	81548458	99366802	49	2299											
RHOBTB3	22836	bcgsc.ca;mdanderson.org	37	5	95067575	95067575	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RHOBTB3	NM_014899	exon2	c.C15T	p.I5I	CCACATCGTGGCG	.	8	3	142	0	.	228	T	95067575	C	T	95067575	2	4	20	1	0	0	0	0	0	0	0	1	13335	874	31	1		1	RHOBTB3	5	95067575	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	13519117	95067575	85847685	50	2300											
PJA2	9867	hgsc.bcm.edu;broad.mit.edu	37	5	108714875	108714875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PJA2	NM_014819	exon4	c.T313G	p.C105G	AACCACAAGTGGG	.	82	5	96	0	.	92	C	108714875	A	C	108714875	3	2	20	1	0	0	0	0	1	0	0	0	11962	130	5	5	1841	5	PJA2	5	108714875	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	13647300	108714875	72200385	51	2301											
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10924837	10924837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SYCP2L	NM_001040274	exon15	c.C1181T	p.S394L	ACATATCACAAGT	.	103	33	69	0	.	24	T	10924837	C	T	10924837	3	4	20	1	0	0	0	0	1	0	0	0	15430	838	29	3	1239	3	SYCP2L	6	10924837	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		10924837	160190230	52	2302											
HIST1H2BD	3017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	26158526	26158526	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HIST1H2BD	NM_021063	exon1	c.C129G	p.Y43X	TGTGTACAAGGTG	.	104	13	201	0	.	70	G	26158526	C	G	26158526	4	3	20	1	0	0	0	0	0	1	0	0	7143	489	17	4	131	4	HIST1H2BD	6	26158526	Nonsense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	15233689	26158526	144956541	53	2303											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33652419	33652419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ITPR3	NM_002224	exon38	c.C5091A	p.N1697K	CCAGAACCGGAAG	.	38	11	211	0	.	1085	A	33652419	C	A	33652419	3	1	20	1	0	0	0	0	1	0	0	0	7922	506	18	3	5241	3	ITPR3	6	33652419	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	7493893	33652419	137462648	54	2304											
BTBD9	114781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38565731	38565731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BTBD9	NM_052893	exon3	c.T140C	p.F47S	GCAGGAAAACGTT	.	198	25	221	0	.	226	G	38565731	A	G	38565731	3	3	20	1	0	0	0	0	1	0	0	0	1548	14	1	2	1837	2	BTBD9	6	38565731	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	4913312	38565731	132549336	55	2305											
MRPL2	51069	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43023661	43023661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MRPL2	NM_015950	exon5	c.G605A	p.R202Q	GCACCCCGGCCTG	.	130	11	158	2	.	90	T	43023661	C	T	43023661	3	4	20	1	0	0	0	0	1	0	0	0	9785	652	23	1	324	1	MRPL2	6	43023661	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	4457930	43023661	128091406	56	2306											
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024440	76024440	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FILIP1	NM_015687	exon5	c.G1108T	p.E370X	CACATTCTCCTTT	.	108	26	148	0	.	94	A	76024440	C	A	76024440	4	1	20	1	0	0	0	0	0	1	0	0	5894	922	32	3	2541	3	FILIP1	6	76024440	Nonsense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	33000779	76024440	95090627	57	2307											
IFNGR1	3459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137522034	137522034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IFNGR1	NM_000416	exon6	c.T845C	p.I282T	GGTAATATTATGC	.	152	9	117	0	.	91	G	137522034	A	G	137522034	3	3	20	1	0	0	0	0	1	0	0	0	7549	449	16	2	632	2	IFNGR1	6	137522034	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	61497594	137522034	33593033	58	2308											
SCRN1	9805	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29980369	29980369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SCRN1	NM_001145514	exon5	c.C728G	p.S243C	ACTTCGGAAAAAT	.	101	22	156	1	.	92	C	29980369	G	C	29980369	3	2	20	1	0	0	0	0	1	0	0	0	13938	1174	41	4	592	4	SCRN1	7	29980369	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		29980369	129158294	59	2309											
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	84727158	84727158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SEMA3D	NM_152754	exon2	c.T275C	p.L92P	CTGAGTAGAAAGA	.	159	16	178	0	.	138	G	84727158	A	G	84727158	3	3	20	1	0	0	0	0	1	0	0	0	14027	420	15	2	2122	2	SEMA3D	7	84727158	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	54746789	84727158	74411505	60	2310											
ASB4	51666	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95115314	95115314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ASB4	NM_016116	exon1	c.T31C	p.S11P	ACTAAATCTGGAG	.	93	41	129	1	.	226	C	95115314	T	C	95115314	3	2	20	1	0	0	0	0	1	0	0	0	1025	1435	50	2	33	2	ASB4	7	95115314	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	10388156	95115314	64023349	61	2311											
LRRC4	64101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127670230	127670230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRRC4	NM_022143	exon2	c.G464A	p.R155H	TTGTTGCGAAGCC	.	30	16	81	0	.	154	T	127670230	C	T	127670230	3	4	20	1	0	0	0	0	1	0	0	0	8997	768	27	1	1501	1	LRRC4	7	127670230	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	32554916	127670230	31468433	62	2312											
RAB19	401409	ucsc.edu;bcgsc.ca	37	7	140125861	140125861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAB19	NM_001008749	exon4	c.G565T	p.G189W	CTATATGGGGAGA	.	66	18	165	2	.	22	T	140125861	G	T	140125861	3	4	20	1	0	0	0	0	1	0	0	0	12904	1348	47	3	575	3	RAB19	7	140125861	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	12455631	140125861	19012802	63	2313											
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	140301984	140301984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DENND2A	NM_015689	exon1	c.G214T	p.E72X	AATCCTCCTGTCC	.	94	37	179	0	.	138	A	140301984	C	A	140301984	4	1	20	1	0	0	0	0	0	1	0	0	4429	864	30	3	2887	3	DENND2A	7	140301984	Nonsense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	176123	140301984	18836679	64	2314											
LPL	4023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	19809442	19809442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LPL	NM_000237	exon3	c.T412A	p.F138I	GCCCGGTTTATCA	.	73	7	192	0	.	92	A	19809442	T	A	19809442	3	1	20	1	0	0	0	0	1	0	0	0	8921	1725	60	4	422	4	LPL	8	19809442	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10		19809442	126554580	65	2315											
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24256455	24256455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADAMDEC1	NM_014479	exon9	c.A831G	p.I277M	TAAGATAAAGGTG	.	115	93	227	0	.	228	G	24256455	A	G	24256455	3	3	20	1	0	0	0	0	1	0	0	0	254	352	13	2	865	2	ADAMDEC1	8	24256455	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	4447013	24256455	122107567	66	2316											
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37729417	37729417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAB11FIP1	NM_001002814	exon4	c.A2903G	p.D968G	TCATCATCCGATG	.	106	6	292	0	.	92	C	37729417	T	C	37729417	3	2	20	1	0	0	0	0	1	0	0	0	12893	1435	50	2	960	2	RAB11FIP1	8	37729417	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	13472962	37729417	108634605	67	2317											
RALYL	138046	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	85785541	85785541	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RALYL	NM_001100391	exon7	c.C633G	p.T211T	ACAGACCATCAAG	.	190	18	186	1	.	23	G	85785541	C	G	85785541	2	3	20	1	0	0	0	0	0	0	0	1	13020	581	21	4		4	RALYL	8	85785541	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	48056124	85785541	60578481	68	2318											
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105509410	105509410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRP12	NM_013437	exon5	c.A1370C	p.H457P	TTACAATGGAAAT	.	96	13	155	0	.	90	G	105509410	T	G	105509410	3	3	20	1	0	0	0	0	1	0	0	0	8954	1464	51	5	1221	5	LRP12	8	105509410	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	19723869	105509410	40854612	69	2319											
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	118175765	118175765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC30A8	NM_173851	exon6	c.G825A	p.M275I	ACTCATGGAAGGT	.	42	22	68	0	.	229	A	118175765	G	A	118175765	3	1	20	1	0	0	0	0	1	0	0	0	14561	1348	47	3	847	3	SLC30A8	8	118175765	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	12666355	118175765	28188257	70	2320	16	2									
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	118175766	118175766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC30A8	NM_173851	exon6	c.G826T	p.E276X	CTCATGGAAGGTA	.	42	22	67	0	.	229	T	118175766	G	T	118175766	4	4	20	1	0	0	0	0	0	1	0	0	14561	1175	41	3	848	3	SLC30A8	8	118175766	Nonsense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	1	118175766	28188256	71	2321	16	2									
ADAMTSL1	92949	broad.mit.edu;bcgsc.ca	37	9	18777038	18777038	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADAMTSL1	NM_001040272	exon19	c.C2811G	p.L937L	CCGCCTCAAGCCC	.	5	3	78	0	.	230	G	18777038	C	G	18777038	2	3	20	1	0	0	0	0	0	0	0	1	274	813	29	4		4	ADAMTSL1	9	18777038	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		18777038	122436393	72	2322											
CA9	768	hgsc.bcm.edu;ucsc.edu	37	9	35674208	35674208	+	Silent	SNP	T	T	C	rs137897809	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	CA9,upper_leg,malignant_melanoma,0	CA9	NM_001216	exon1	c.T252C	p.P84P	TCTACCTGGAGAG	.	85	12	133	0	T|0.985;C|0.015	95	C	35674208	T	C	35674208	2	2	20	1	0	0	0	0	0	0	0	1	2524	1567	55	2		2	CA9	9	35674208	Silent	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	16897170	35674208	105539223	73	2323											
ZNF658	26149	broad.mit.edu;mdanderson.org	37	9	40774978	40774978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF658	NM_033160	exon5	c.G297T	p.W99C	TTCTTGCCACAGA	.	78	7	39	0	.	45	A	40774978	C	A	40774978	3	1	20	1	0	0	0	0	1	0	0	0	18066	740	26	3	2886	3	ZNF658	9	40774978	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	5100770	40774978	100438453	74	2324											
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767486	105767486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYLC2	NM_001340	exon5	c.A573T	p.K191N	CAAAAAAGATAAA	.	166	44	130	0	.	91	T	105767486	A	T	105767486	3	4	20	1	0	0	0	0	1	0	0	0	4142	69	3	4	591	4	CYLC2	9	105767486	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	64992508	105767486	35445945	75	2325											
GARNL3	84253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130073954	130073954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GARNL3	NM_032293	exon3	c.G259A	p.V87M	ACAGACGTGCACT	.	186	23	143	0	.	516	A	130073954	G	A	130073954	3	1	20	1	0	0	0	0	1	0	0	0	6241	1145	40	1	269	1	GARNL3	9	130073954	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	24306468	130073954	11139477	76	2326											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131764256	131764256	+	Splice_Site	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NUP188	NM_015354	exon36	c.4137+1G>A	.	GCACAGGTGAGTG	.	49	7	134	0	.	207	A	131764256	G	A	131764256	5	1	20	1	0	0	0	0	0	0	1	0	10758	1275	44	3	4280	3	NUP188	9	131764256	Splice_Site	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	1690302	131764256	9449175	77	2327											
ATP5C1	509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7839122	7839122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ATP5C1	NM_001001973	exon3	c.A204G	p.I68M	TCGAATATATGGA	.	93	28	88	0	.	90	G	7839122	A	G	7839122	3	3	20	1	0	0	0	0	1	0	0	0	1149	439	16	2	214	2	ATP5C1	10	7839122	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10		7839122	127695625	78	2328											
TAF3	83860	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	8006085	8006085	+	Silent	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TAF3	NM_031923	exon3	c.G612T	p.T204T	GGACACGCTAGAT	.	144	51	270	2	.	69	T	8006085	G	T	8006085	2	4	20	1	0	0	0	0	0	0	0	1	15522	1074	38	1		1	TAF3	10	8006085	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	166963	8006085	127528662	79	2329											
MSMB	4477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	51562361	51562361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MSMB	NM_138634	exon3	c.C200T	p.T67I	GAAGGACCCAAAA	.	98	7	101	0	.	92	T	51562361	C	T	51562361	3	4	20	1	0	0	0	0	1	0	0	0	9883	507	18	3	320	3	MSMB	10	51562361	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	43556276	51562361	83972386	80	2330											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55955547	55955547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PCDH15	NM_001142763	exon12	c.C1216G	p.Q406E	AGCCTTGATAACT	.	89	45	139	0	.	193	C	55955547	G	C	55955547	3	2	20	1	0	0	0	0	1	0	0	0	11511	1299	45	4	6402	4	PCDH15	10	55955547	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	4393186	55955547	79579200	81	2331											
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88478564	88478564	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LDB3	NM_001171610	exon12	c.1953delC	p.S651fs	GAACAGCCTCTTC	.	60	24	151	0	.	92	-	88478564	C	-	88478564	7	5	20	1	0	1	0	1	0	0	0	0	8697	738	26	0	2316	0	LDB3	10	88478564	Frame_Shift_Del	DEL	C	TCGA-BW-A5NO-01A-11D-A27I-10	32523017	88478564	47056183	82	2332											
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106959827	106959827	+	Missense_Mutation	SNP	C	C	T	rs202188584	alternate_allele	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	SORCS3,brain,glioma,-2	SORCS3	NM_014978	exon15	c.C2080T	p.R694W	TTCAGCCGGCATT	.	76	27	218	0	.	99	T	106959827	C	T	106959827	3	4	20	1	0	0	0	0	1	0	0	0	14932	643	23	1	2138	1	SORCS3	10	106959827	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	18481263	106959827	28574920	83	2333											
OR52M1	119772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	4566482	4566482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR52M1	NM_001004137	exon1	c.G62A	p.G21E	TCCCAGGGCTGGA	.	96	7	115	2	.	68	A	4566482	G	A	4566482	3	1	20	1	0	0	0	0	1	0	0	0	11126	1232	43	3	64	3	OR52M1	11	4566482	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		4566482	130440034	84	2334											
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4944787	4944787	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR51G1	NM_001005237	exon1	c.T783C	p.S261S	CACAAGAGACAAG	.	113	9	199	0	.	70	G	4944787	A	G	4944787	2	3	20	1	0	0	0	0	0	0	0	1	11098	291	11	2		2	OR51G1	11	4944787	Silent	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	378305	4944787	130061729	85	2335											
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22380967	22380967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC17A6	NM_020346	exon4	c.G467T	p.G156V	TTTTCGGAGCTGC	.	94	11	102	0	.	580	T	22380967	G	T	22380967	3	4	20	1	0	0	0	0	1	0	0	0	14421	1174	41	3	481	3	SLC17A6	11	22380967	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	17436180	22380967	112625549	86	2336											
OR9G9	504191	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56468383	56468383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001013358	exon1	c.G520A	p.D174N	ATCATTGATGACT	.	175	13	239	1	.	.	A	56468383	G	A	56468383	3	1	20	1	0	0	0	0	1	0	0	0	11252	1290	45	3	522	3	OR9G9	11	56468383	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	34087416	56468383	78538133	87	2337											
CUL5	8065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	107920728	107920728	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CUL5	NM_003478	exon4	c.A346T	p.I116F	CTAGAGATTACTT	.	124	11	113	0	.	227	T	107920728	A	T	107920728	3	4	20	1	0	0	0	0	1	0	0	0	4059	333	12	4	360	4	CUL5	11	107920728	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	51452345	107920728	27085788	88	2338											
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123601551	123601551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF202	NM_003455	exon4	c.G46A	p.E16K	TTCCCTCTTCTTC	.	96	21	168	0	.	91	T	123601551	C	T	123601551	3	4	20	1	0	0	0	0	1	0	0	0	17760	922	32	3	1924	3	ZNF202	11	123601551	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	15680823	123601551	11404965	89	2339											
PLEKHG6	55200	broad.mit.edu;bcgsc.ca	37	12	6436779	6436780	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLEKHG6	NM_001144856	exon15	c.2030_2031insA	p.R677fs	CCGAGCGAGGGAA	.	9	5	49	0	.	295	A	6436780	-	A	6436779	7	5	20	1	0	1	1	0	0	0	0	0	12074	1058	37	0	2130	0	PLEKHG6	12	6436779	Frame_Shift_Ins	INS	-	TCGA-BW-A5NO-01A-11D-A27I-10		6436779	127415116	90	2340											
TAS2R10	50839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10978718	10978718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TAS2R10	NM_023921	exon1	c.G151A	p.A51T	AAATAGCTAAGCC	.	91	35	98	0	.	90	T	10978718	C	T	10978718	3	4	20	1	0	0	0	0	1	0	0	0	15563	797	28	3	776	3	TAS2R10	12	10978718	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	4541939	10978718	122873177	91	2341											
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15813579	15813579	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EPS8	NM_004447	exon10	c.A906G	p.K302K	CTTGTTTTTCTTC	.	75	15	71	0	.	94	C	15813579	T	C	15813579	2	2	20	1	0	0	0	0	0	0	0	1	5194	1838	64	2		2	EPS8	12	15813579	Silent	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	4834861	15813579	118038316	92	2342											
PIK3C2G	5288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18747452	18747452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PIK3C2G	NM_004570	exon29	c.C3913T	p.L1305F	TTTTTCCTCTCTG	.	180	39	134	2	.	1312	T	18747452	C	T	18747452	3	4	20	1	0	0	0	0	1	0	0	0	11911	681	24	3	4023	3	PIK3C2G	12	18747452	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	2933873	18747452	115104443	93	2343											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	72017915	72017915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZFC3H1	NM_144982	exon23	c.G4475A	p.G1492E	CATCTTCCAGTAA	.	80	5	59	0	.	138	T	72017915	C	T	72017915	3	4	20	1	0	0	0	0	1	0	0	0	17630	855	30	3	1546	3	ZFC3H1	12	72017915	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	53270463	72017915	61833980	94	2344											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83290361	83290361	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMTC2	NM_152588	exon3	c.G1419A	p.R473R	GATCAGGAATGGA	.	124	17	60	0	.	92	A	83290361	G	A	83290361	2	1	20	1	0	0	0	0	0	0	0	1	16258	1165	41	3		3	TMTC2	12	83290361	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	11272446	83290361	50561534	95	2345											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109629713	109629713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACACB	NM_001093	exon14	c.T2357A	p.M786K	ATGCGATGTTCAG	.	187	35	242	0	.	98	A	109629713	T	A	109629713	3	1	20	1	0	0	0	0	1	0	0	0	107	1464	51	4	2411	4	ACACB	12	109629713	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	26339352	109629713	24222182	96	2346											
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113444385	113444385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OAS2	NM_002535	exon8	c.G1636T	p.V546L	CGCCTGGTGAAGC	.	118	43	132	0	.	91	T	113444385	G	T	113444385	3	4	20	1	0	0	0	0	1	0	0	0	10800	1261	44	3	1737	3	OAS2	12	113444385	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	3814672	113444385	20407510	97	2347											
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	115118767	115118767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TBX3	NM_005996	exon2	c.G574T	p.A192S	CAGTAGCGGGGCT	.	299	113	368	1	.	93	A	115118767	C	A	115118767	3	1	20	1	0	0	0	0	1	0	0	0	15656	768	27	1	1685	1	TBX3	12	115118767	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	1674382	115118767	18733128	98	2348											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120222843	120222843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CIT	NM_001206999	exon11	c.C1322A	p.P441H	TTGGCAGGGGAGT	.	107	5	149	0	.	399	T	120222843	G	T	120222843	3	4	20	1	0	0	0	0	1	0	0	0	3438	1000	35	3	4909	3	CIT	12	120222843	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	5104076	120222843	13629052	99	2349											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39266353	39266353	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FREM2	NM_207361	exon1	c.C4872A	p.T1624T	TGGCACCCATACA	.	111	22	204	0	.	100	A	39266353	C	A	39266353	2	1	20	1	0	0	0	0	0	0	0	1	6045	610	22	3		3	FREM2	13	39266353	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		39266353	75903525	100	2350											
OXA1L	5018	hgsc.bcm.edu;bcgsc.ca	37	14	23235798	23235798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OXA1L	NM_005015	exon1	c.C68T	p.P23L	TTTTACCGCCTGA	.	84	4	195	0	.	204	T	23235798	C	T	23235798	3	4	20	1	0	0	0	0	1	0	0	0	11328	652	23	1	70	1	OXA1L	14	23235798	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		23235798	84113742	101	2351											
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	92436115	92436115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TRIP11	NM_004239	exon21	c.C5842G	p.L1948V	GTTTCAGAAGAAG	.	221	9	270	0	.	1400	C	92436115	G	C	92436115	3	2	20	1	0	0	0	0	1	0	0	0	16552	933	33	4	101	4	TRIP11	14	92436115	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	69200317	92436115	14913425	102	2352											
EML1	2009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100361092	100361092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EML1	NM_001008707	exon7	c.G731T	p.W244L	TGGAATGGGTGTA	.	66	18	107	0	.	138	T	100361092	G	T	100361092	3	4	20	1	0	0	0	0	1	0	0	0	5096	1357	47	3	757	3	EML1	14	100361092	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	7924977	100361092	6988448	103	2353											
EID1	23741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49170689	49170689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EID1	NM_014335	exon1	c.G316C	p.E106Q	GACTGGGAGGACG	.	50	4	124	0	.	91	C	49170689	G	C	49170689	3	2	20	1	0	0	0	0	1	0	0	0	4986	1175	41	4	318	4	EID1	15	49170689	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		49170689	53360703	104	2354											
USP10	9100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84801856	84801856	+	Silent	SNP	G	G	A	rs185085167	by1000genomes	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	USP10	NM_001272075	exon12	c.G1902A	p.T634T	TTTCACGTTGCAG	.	92	29	175	0	G|0.999;A|0.000	636	A	84801856	G	A	84801856	2	1	20	1	0	0	0	0	0	0	0	1	17038	1132	40	1		1	USP10	16	84801856	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		84801856	5552897	105	2355											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577142	7577142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	TP53,NS,carcinoma,+1	TP53	NM_000546	exon8	c.G796A	p.G266R	TCCGTCCCAGTAG	.	60	7	123	0	.	70225	T	7577142	C	T	7577142	3	4	20	1	0	0	0	0	1	0	0	0	16378	632	22	3	490	3	TP53	17	7577142	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		7577142	73618068	106	2356											
KDM6B	23135	ucsc.edu;bcgsc.ca	37	17	7751676	7751676	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	KDM6B	NM_001080424	exon11	c.C2070T	p.I690I	CAAGATCCTACCT	.	11	4	85	0	.	205	T	7751676	C	T	7751676	2	4	20	1	0	0	0	0	0	0	0	1	8138	845	30	3		3	KDM6B	17	7751676	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	174534	7751676	73443534	107	2357											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27421037	27421037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MYO18A	NM_078471	exon31	c.T4782A	p.D1594E	CTCCTCATCCCGA	.	63	29	108	0	.	22	T	27421037	A	T	27421037	3	4	20	1	0	0	0	0	1	0	0	0	10065	214	8	4	1430	4	MYO18A	17	27421037	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	19669361	27421037	53774173	108	2358											
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33770885	33770885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLFN13	NM_144682	exon4	c.G1121A	p.S374N	GAAGGACTGTCAG	.	183	51	83	0	.	91	T	33770885	C	T	33770885	3	4	20	1	0	0	0	0	1	0	0	0	14736	565	20	3	1584	3	SLFN13	17	33770885	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	6349848	33770885	47424325	109	2359											
TADA2A	6871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35836972	35836972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TADA2A	NM_001488	exon16	c.A1217G	p.N406S	AATGTAACAAGCA	.	159	24	111	0	.	230	G	35836972	A	G	35836972	3	3	20	1	0	0	0	0	1	0	0	0	15507	43	2	2	1370	2	TADA2A	17	35836972	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	2066087	35836972	45358238	110	2360											
C18orf8	29919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21089229	21089229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C18orf8	NM_013326	exon5	c.A394G	p.I132V	CAAGGAATCGAAT	.	145	21	144	0	.	91	G	21089229	A	G	21089229	3	3	20	1	0	0	0	0	1	0	0	0	1907	101	4	2	412	2	C18orf8	18	21089229	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10		21089229	56988019	111	2361											
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6904085	6904085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EMR1	NM_001256253	exon8	c.C841G	p.P281A	TGTGGTCCTAATT	.	108	12	101	0	.	526	G	6904085	C	G	6904085	3	3	20	1	0	0	0	0	1	0	0	0	5104	855	30	4	871	4	EMR1	19	6904085	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		6904085	52224898	112	2362											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9018487	9018487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC16	NM_024690	exon24	c.C37687T	p.R12563C	CAGGGCGATGCAT	.	177	12	306	0	.	566	A	9018487	G	A	9018487	3	1	20	1	0	0	0	0	1	0	0	0	9973	1058	37	1	6080	1	MUC16	19	9018487	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	2114402	9018487	50110496	113	2363											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9038131	9038131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC16	NM_024690	exon8	c.G36145T	p.V12049L	AAGTCACTGGAGC	.	114	8	103	0	.	566	A	9038131	C	A	9038131	3	1	20	1	0	0	0	0	1	0	0	0	9973	565	20	3	7686	3	MUC16	19	9038131	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	19644	9038131	50090852	114	2364											
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10791742	10791742	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ILF3	NM_017620	exon10	c.C1005T	p.G335G	CCTAGGCATGGAC	.	35	11	107	0	.	93	T	10791742	C	T	10791742	2	4	20	1	0	0	0	0	0	0	0	1	7712	697	25	3		3	ILF3	19	10791742	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	1753611	10791742	48337241	115	2365											
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14952528	14952528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR7A10	NM_001005190	exon1	c.C162A	p.H54Q	GTGGAGGTGGGAG	.	112	8	126	0	.	68	T	14952528	G	T	14952528	3	4	20	1	0	0	0	0	1	0	0	0	11214	1252	44	3	771	3	OR7A10	19	14952528	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	4160786	14952528	44176455	116	2366											
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17068704	17068704	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CPAMD8	NM_015692	exon19	c.T2376C	p.T792T	GAAGAAAGTCCTT	.	102	26	92	0	.	141	G	17068704	A	G	17068704	2	3	20	1	0	0	0	0	0	0	0	1	3795	59	3	2		2	CPAMD8	19	17068704	Silent	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	2116176	17068704	42060279	117	2367											
HAUS8	93323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17160925	17160925	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HAUS8	NM_033417	exon11	c.C991G	p.Q331E	CTTCCTGGTTTGC	.	51	21	127	0	.	90	C	17160925	G	C	17160925	3	2	20	1	0	0	0	0	1	0	0	0	6972	1357	47	4	245	4	HAUS8	19	17160925	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	92221	17160925	41968058	118	2368											
BIRC8	112401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53793408	53793408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BIRC8	NM_033341	exon1	c.G220A	p.G74R	CATGTCCCTTCTC	.	145	59	187	0	.	227	T	53793408	C	T	53793408	3	4	20	1	0	0	0	0	1	0	0	0	1440	632	22	3	494	3	BIRC8	19	53793408	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	36632483	53793408	5335575	119	2369											
LILRA2	11027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55085353	55085353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LILRA2	NM_001130917	exon1	c.C8T	p.P3L	TGACCCCCATCCT	.	92	25	211	1	.	91	T	55085353	C	T	55085353	3	4	20	1	0	0	0	0	1	0	0	0	8785	623	22	3	10	3	LILRA2	19	55085353	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	1291945	55085353	4043630	120	2370											
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35684006	35684006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RBL1	NM_183404	exon11	c.G1417A	p.E473K	CAGTCTCTAGTAT	.	99	12	59	0	.	419	T	35684006	C	T	35684006	3	4	20	1	0	0	0	0	1	0	0	0	13109	922	32	3	1846	3	RBL1	20	35684006	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10		35684006	27341514	121	2371											
LBP	3929	hgsc.bcm.edu;broad.mit.edu	37	20	36999383	36999383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LBP	NM_004139	exon11	c.1151delC	p.A384fs	TCCAGGCCACTAA	.	186	15	204	0	.	91	-	36999383	C	-	36999383	7	5	20	1	0	1	0	1	0	0	0	0	8651	753	26	0	1193	0	LBP	20	36999383	Frame_Shift_Del	DEL	C	TCGA-BW-A5NO-01A-11D-A27I-10	1315377	36999383	26026137	122	2372											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu	37	20	50406807	50406807	+	Missense_Mutation	SNP	C	C	A	rs41274696	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SALL4	NM_020436	exon2	c.G2215T	p.A739S	AAGGGGCAGGACC	.	80	4	138	0	C|0.998;A|0.002	92	A	50406807	C	A	50406807	3	1	20	1	0	0	0	0	1	0	0	0	13813	710	25	3	958	3	SALL4	20	50406807	Missense_Mutation	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	13407424	50406807	12618713	123	2373											
CASS4	57091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55012476	55012476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CASS4	NM_020356	exon2	c.A293G	p.Y98C	AGACCTATCAGGT	.	11	5	104	0	.	25	G	55012476	A	G	55012476	3	3	20	1	0	0	0	0	1	0	0	0	2683	449	16	2	299	2	CASS4	20	55012476	Missense_Mutation	SNP	A	TCGA-BW-A5NO-01A-11D-A27I-10	4605669	55012476	8013044	124	2374											
MX2	4600	broad.mit.edu;ucsc.edu	37	21	42770846	42770846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MX2	NM_002463	exon9	c.G1172T	p.G391V	TAGAAGGACAAAT	.	40	4	136	0	.	92	T	42770846	G	T	42770846	3	4	20	1	0	0	0	0	1	0	0	0	9998	1174	41	3	1202	3	MX2	21	42770846	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		42770846	5359049	125	2375											
TRPM2	7226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45811268	45811268	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TRPM2	NM_003307	exon11	c.C1554T	p.T518T	GGACACCTTGCTC	.	132	16	273	1	.	92	T	45811268	C	T	45811268	2	4	20	1	0	0	0	0	0	0	0	1	16583	668	24	3		3	TRPM2	21	45811268	Silent	SNP	C	TCGA-BW-A5NO-01A-11D-A27I-10	3040422	45811268	2318627	126	2376											
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	19207465	19207465	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CLTCL1	NM_001835	exon18	c.A2848T	p.R950X	CCTTTCTGCATAC	.	106	37	150	0	.	230	A	19207465	T	A	19207465	4	1	20	1	0	0	0	0	0	1	0	0	3567	1588	55	4	2134	4	CLTCL1	22	19207465	Nonsense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10		19207465	32097101	127	2377											
C22orf29	79680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19839038	19839038	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C22orf29	NM_024627	exon3	c.A747G	p.V249V	TCTAGATACAGAG	.	17	8	77	0	.	90	C	19839038	T	C	19839038	2	2	20	1	0	0	0	0	0	0	0	1	2141	1393	49	2		2	C22orf29	22	19839038	Silent	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	631573	19839038	31465528	128	2378											
CACNA1I	8911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40030630	40030630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CACNA1I	NM_001003406	exon5	c.T641A	p.L214Q	TCCTGCTGCTCTG	.	121	52	215	1	.	135	A	40030630	T	A	40030630	3	1	20	1	0	0	0	0	1	0	0	0	2546	1580	55	4	659	4	CACNA1I	22	40030630	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	20191592	40030630	11273936	129	2379											
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34961245	34961245	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FAM47B	NM_152631	exon1	c.G297A	p.K99K	GCTCAAGAAAGCG	.	85	43	132	0	.	196	A	34961245	G	A	34961245	2	1	20	1	0	0	0	0	0	0	0	1	5570	933	33	3		3	FAM47B	23	34961245	Silent	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10		34961245	120309315	130	2380											
ACRC	93953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70824088	70824088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACRC	NM_052957	exon8	c.G961A	p.D321N	AGTGATGATTCGG	.	134	93	144	1	.	93	A	70824088	G	A	70824088	3	1	20	1	0	0	0	0	1	0	0	0	171	1290	45	3	987	3	ACRC	23	70824088	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	35862843	70824088	84446472	131	2381											
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83359655	83359655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RPS6KA6	NM_014496	exon17	c.A1466G	p.D489G	CTACCATCATCAA	.	174	155	106	0	.	615	C	83359655	T	C	83359655	3	2	20	1	0	0	0	0	1	0	0	0	13655	1435	50	2	795	2	RPS6KA6	23	83359655	Missense_Mutation	SNP	T	TCGA-BW-A5NO-01A-11D-A27I-10	12535567	83359655	71910905	132	2382											
MAGEA12	4111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	151900290	151900290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MAGEA12	NM_005367	exon2	c.C511A	p.R171S	CGATGCGGACCAC	.	311	245	398	2	.	131	T	151900290	G	T	151900290	3	4	20	1	0	0	0	0	1	0	0	0	9166	1116	39	1	437	1	MAGEA12	23	151900290	Missense_Mutation	SNP	G	TCGA-BW-A5NO-01A-11D-A27I-10	68540635	151900290	3370270	133	2383											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	bycluster	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	NRAS,NS,haematopoietic_neoplasm,0	NRAS	NM_002524	exon3	c.C181A	p.Q61K	CTTCTTGTCCAGC	.	75	8	100	0	.	32773	T	115256530	G	T	115256530	3	4	21	1	0	0	0	0	1	0	0	0	10640	1386	48	3	400	3	NRAS	1	115256530	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		115256530	133994091	1	2384											
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145533439	145533439	+	Missense_Mutation	SNP	G	G	T	rs149835959	alternate_allele	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ITGA10	NM_003637	exon12	c.G1322T	p.R441L	TTTTGCGGGGTGG	.	77	8	37	0	G|1.000;A|0.000	231	T	145533439	G	T	145533439	3	4	21	1	0	0	0	0	1	0	0	0	7873	1116	39	1	1368	1	ITGA10	1	145533439	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	30276909	145533439	103717182	2	2385											
NUP210L	91181	broad.mit.edu;mdanderson.org	37	1	154127337	154127337	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	NUP210L	NM_001159484	exon1	c.C184T	p.Q62X	CCCGCTGGGCCTC	.	298	22	183	1	.	77	A	154127337	G	A	154127337	4	1	21	1	0	0	0	0	0	1	0	0	10761	1357	47	3	5642	3	NUP210L	1	154127337	Nonsense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	8593898	154127337	95123284	3	2386											
CCT3	7203	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156287253	156287253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CCT3	NM_005998	exon9	c.T845A	p.I282N	TGGATAATGTCCT	.	251	31	138	1	.	92	T	156287253	A	T	156287253	3	4	21	1	0	0	0	0	1	0	0	0	2954	101	4	4	816	4	CCT3	1	156287253	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	2159916	156287253	92963368	4	2387											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176759013	176759013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	PAPPA2	NM_020318	exon18	c.G4784A	p.C1595Y	TGGTGTGTGAGCC	.	156	44	136	0	.	548	A	176759013	G	A	176759013	3	1	21	1	0	0	0	0	1	0	0	0	11433	1377	48	3	4903	3	PAPPA2	1	176759013	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	20471760	176759013	72491608	5	2388											
RNF2	6045	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	185067215	185067215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	RNF2	NM_007212	exon5	c.G476T	p.G159V	AGCGAGGCAAGAA	.	117	15	80	1	.	658	T	185067215	G	T	185067215	3	4	21	1	0	0	0	0	1	0	0	0	13472	1203	42	3	490	3	RNF2	1	185067215	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	8308202	185067215	64183406	6	2389											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197297620	197297620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CRB1	NM_001257966	exon2	c.G139T	p.D47Y	TGCAAAGATTTTT	.	173	7	104	0	.	161	T	197297620	G	T	197297620	3	4	21	1	0	0	0	0	1	0	0	0	3848	942	33	3	145	3	CRB1	1	197297620	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	12230405	197297620	51953001	7	2390											
IPO9	55705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201827625	201827625	+	Silent	SNP	A	A	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	IPO9	NM_018085	exon12	c.A1272C	p.A424A	TGCTGCAGCCACT	.	246	72	210	0	.	228	C	201827625	A	C	201827625	2	2	21	1	0	0	0	0	0	0	0	1	7799	175	7	5		5	IPO9	1	201827625	Silent	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	4530005	201827625	47422996	8	2391											
TMCC2	9911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205238236	205238236	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TMCC2	NM_014858	exon3	c.G906A	p.Q302Q	CGAGCAGATCAAG	.	491	82	367	0	.	91	A	205238236	G	A	205238236	2	1	21	1	0	0	0	0	0	0	0	1	15990	933	33	3		3	TMCC2	1	205238236	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	3410611	205238236	44012385	9	2392											
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230468774	230468774	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	PGBD5	NM_001258311	exon5	c.C1089T	p.C363C	CAAGCCGCAGCAG	.	57	34	44	0	.	93	A	230468774	G	A	230468774	2	1	21	1	0	0	0	0	0	0	0	1	11784	1079	38	1		1	PGBD5	1	230468774	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	25230538	230468774	18781847	10	2393											
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24535152	24535152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ITSN2	NM_147152	exon5	c.A281T	p.Q94L	GGCAACTGTTGGC	.	308	62	299	0	.	539	A	24535152	T	A	24535152	3	1	21	1	0	0	0	0	1	0	0	0	7927	1580	55	4	5007	4	ITSN2	2	24535152	Missense_Mutation	SNP	T	TCGA-BW-A5NP-01A-11D-A27I-10		24535152	218664221	11	2394											
LCLAT1	253558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	30863264	30863264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	LCLAT1	NM_182551	exon7	c.G1024A	p.V342I	CTCAGGGTCCTTG	.	143	65	158	1	.	92	A	30863264	G	A	30863264	3	1	21	1	0	0	0	0	1	0	0	0	8677	1261	44	3	1046	3	LCLAT1	2	30863264	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	6328112	30863264	212336109	12	2395											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54753649	54753649	+	Missense_Mutation	SNP	A	A	T	rs147661901	alternate_allele	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	SPTBN1	NM_003128	exon2	c.A94T	p.N32Y	TGGGACAATGAGA	.	128	64	137	0	A|1.000;G|0.000	140	T	54753649	A	T	54753649	3	4	21	1	0	0	0	0	1	0	0	0	15118	130	5	4	96	4	SPTBN1	2	54753649	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	23890385	54753649	188445724	13	2396											
ST6GAL2	84620	broad.mit.edu;mdanderson.org	37	2	107459569	107459569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ST6GAL2	NM_032528	exon2	c.C865A	p.H289N	GGGGGTGCAGCTG	.	20	7	18	0	.	191	T	107459569	G	T	107459569	3	4	21	1	0	0	0	0	1	0	0	0	15221	1319	46	3	831	3	ST6GAL2	2	107459569	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	52705920	107459569	135739804	14	2397											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128477498	128477498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	WDR33	NM_018383	exon16	c.C2101A	p.P701T	CTTGAGGACCAGA	.	33	13	52	0	.	90	T	128477498	G	T	128477498	3	4	21	1	0	0	0	0	1	0	0	0	17284	1174	41	3	1937	3	WDR33	2	128477498	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	21017929	128477498	114721875	15	2398											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179441674	179441674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TTN	NM_001267550	exon324	c.C69388A	p.P23130T	TGACAGGTTCAGA	.	132	38	121	0	.	636	T	179441674	G	T	179441674	3	4	21	1	0	0	0	0	1	0	0	0	16732	1261	44	3	38747	3	TTN	2	179441674	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	50964176	179441674	63757699	16	2399											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179485580	179485580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TTN	NM_001267550	exon247	c.T45757C	p.Y15253H	TGATGTATTTTGA	.	170	36	99	0	.	636	G	179485580	A	G	179485580	3	3	21	1	0	0	0	0	1	0	0	0	16732	449	16	2	62400	2	TTN	2	179485580	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	43906	179485580	63713793	17	2400											
COL5A2	1290	broad.mit.edu;bcgsc.ca	37	2	189949905	189949905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	COL5A2	NM_000393	exon11	c.C779G	p.P260R	TTACCAGGAGGGC	.	396	20	308	2	.	92	C	189949905	G	C	189949905	3	2	21	1	0	0	0	0	1	0	0	0	3697	1000	35	4	3896	4	COL5A2	2	189949905	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	10464325	189949905	53249468	18	2401											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215862522	215862522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ABCA12	NM_173076	exon23	c.G3191T	p.S1064I	GAGACACTGGTTA	.	220	83	188	0	.	99	A	215862522	C	A	215862522	3	1	21	1	0	0	0	0	1	0	0	0	30	565	20	3	4720	3	ABCA12	2	215862522	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	25912617	215862522	27336851	19	2402											
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14964028	14964028	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	FGD5	NM_152536	exon15	c.G3780A	p.R1260R	CCTGCGGCGTCAT	.	113	18	90	0	.	231	A	14964028	G	A	14964028	2	1	21	1	0	0	0	0	0	0	0	1	5836	1190	42	3		3	FGD5	3	14964028	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		14964028	183058402	20	2403											
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37574884	37574884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ITGA9	NM_002207	exon14	c.G1453A	p.G485R	CACGACGGACAGC	.	175	72	169	0	.	715	A	37574884	G	A	37574884	3	1	21	1	0	0	0	0	1	0	0	0	7883	1117	39	1	1507	1	ITGA9	3	37574884	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	22610856	37574884	160447546	21	2404											
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89456488	89456488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	EPHA3	NM_005233	exon8	c.T1664A	p.L555H	TTATTCTCCTCAC	.	142	74	178	0	.	1500	A	89456488	T	A	89456488	3	1	21	1	0	0	0	0	1	0	0	0	5168	1551	54	4	1720	4	EPHA3	3	89456488	Missense_Mutation	SNP	T	TCGA-BW-A5NP-01A-11D-A27I-10	51881604	89456488	108565942	22	2405											
HHLA2	11148	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	108076864	108076864	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	HHLA2	NM_007072	exon6	c.C859T	p.R287X	GAATCCCGATTCT	.	116	63	159	0	.	1	T	108076864	C	T	108076864	4	4	21	1	0	0	0	0	0	1	0	0	7095	644	23	1	873	1	HHLA2	3	108076864	Nonsense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	18620376	108076864	89945566	23	2406											
DPPA2	151871	broad.mit.edu;bcgsc.ca	37	3	109026919	109026919	+	Silent	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	DPPA2	NM_138815	exon6	c.C618A	p.S206S	AGGAATGGAACAT	.	147	6	177	1	.	93	T	109026919	G	T	109026919	2	4	21	1	0	0	0	0	0	0	0	1	4734	1335	47	3		3	DPPA2	3	109026919	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	950055	109026919	88995511	24	2407											
ZBED2	79413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111312778	111312778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ZBED2	NM_024508	exon2	c.G271T	p.V91F	CGTTGACCCCAGG	.	38	21	38	0	.	91	A	111312778	C	A	111312778	3	1	21	1	0	0	0	0	1	0	0	0	17515	507	18	3	389	3	ZBED2	3	111312778	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	2285859	111312778	86709652	25	2408											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113375328	113375328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	KIAA2018	NM_001009899	exon7	c.G5201T	p.C1734F	GTCTGACAATCAG	.	179	22	225	0	.	93	A	113375328	C	A	113375328	3	1	21	1	0	0	0	0	1	0	0	0	8268	478	17	3	1540	3	KIAA2018	3	113375328	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	2062550	113375328	84647102	26	2409											
ADCY5	111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123033087	123033087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ADCY5	NM_183357	exon12	c.G2437A	p.V813I	CCTTTACGCAGGA	.	300	95	458	1	.	94	T	123033087	C	T	123033087	3	4	21	1	0	0	0	0	1	0	0	0	297	536	19	1	1388	1	ADCY5	3	123033087	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	9657759	123033087	74989343	27	2410											
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142840620	142840620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CHST2	NM_004267	exon2	c.C962T	p.P321L	GAGACCCGGCCCT	.	39	28	48	0	.	93	T	142840620	C	T	142840620	3	4	21	1	0	0	0	0	1	0	0	0	3404	652	23	1	964	1	CHST2	3	142840620	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	19807533	142840620	55181810	28	2411											
SLC33A1	9197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155571528	155571528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	SLC33A1	NM_004733	exon1	c.A259G	p.I87V	GGGGAATACCCTG	.	101	60	117	0	.	156	C	155571528	T	C	155571528	3	2	21	1	0	0	0	0	1	0	0	0	14566	1406	49	2	1414	2	SLC33A1	3	155571528	Missense_Mutation	SNP	T	TCGA-BW-A5NP-01A-11D-A27I-10	12730908	155571528	42450902	29	2412											
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	174951769	174951769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	NAALADL2	NM_207015	exon3	c.G594T	p.K198N	TTCAAAGAAGATT	.	64	16	69	0	.	47	T	174951769	G	T	174951769	3	4	21	1	0	0	0	0	1	0	0	0	10130	933	33	3	604	3	NAALADL2	3	174951769	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	19380241	174951769	23070661	30	2413											
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180361989	180361989	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CCDC39	NM_181426	exon12	c.C1584T	p.S528S	CATAAGGGACTGT	.	20	7	29	0	.	72	A	180361989	G	A	180361989	2	1	21	1	0	0	0	0	0	0	0	1	2811	1219	43	3		3	CCDC39	3	180361989	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	5410220	180361989	17660441	31	2414											
TMPRSS11D	9407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68691558	68691558	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TMPRSS11D	NM_004262	exon9	c.C987T	p.V329V	TATTCTGACCTGT	.	130	31	141	0	.	91	A	68691558	G	A	68691558	2	1	21	1	0	0	0	0	0	0	0	1	16238	1277	45	3		3	TMPRSS11D	4	68691558	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		68691558	122462718	32	2415											
NUP54	53371	broad.mit.edu;bcgsc.ca	37	4	77065333	77065333	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	NUP54	NM_017426	exon3	c.A264G	p.G88G	AAATCCTCCAAAT	.	163	7	242	1	.	205	C	77065333	T	C	77065333	2	2	21	1	0	0	0	0	0	0	0	1	10767	1538	54	2		2	NUP54	4	77065333	Silent	SNP	T	TCGA-BW-A5NP-01A-11D-A27I-10	8373775	77065333	114088943	33	2416											
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	90816255	90816256	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	.	.	.	.	p.P45N	TCAGTTCCTCCAA	.	32	21	76	0	.	.	AA	90816256	CC	AA	90816255	3	1	21	1	0	0	0	0	1	0	0	0	9670	855	30	3	135	3	MMRN1	4	90816255	Missense_Mutation	DNP	CC	TCGA-BW-A5NP-01A-11D-A27I-10	13750922	90816255	100338021	34	2417											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123193335	123193335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	KIAA1109	NM_015312	exon46	c.C8221G	p.P2741A	ACAGAGCCAACAT	.	102	34	182	0	.	80	G	123193335	C	G	123193335	3	3	21	1	0	0	0	0	1	0	0	0	8208	739	26	4	8403	4	KIAA1109	4	123193335	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	32377080	123193335	67960941	35	2418											
HPGD	3248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	175439184	175439184	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	HPGD	NM_000860	exon3	c.T262A	p.L88M	TGACCAAAATGTC	.	86	7	129	0	.	90	T	175439184	A	T	175439184	3	4	21	1	0	0	0	0	1	0	0	0	7334	11	1	4	558	4	HPGD	4	175439184	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	52245849	175439184	15715092	36	2419											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	90000211	90000211	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	GPR98	NM_032119	exon36	c.G8292A	p.S2764S	GGGGTCGTTGAAT	.	238	16	224	0	.	103	A	90000211	G	A	90000211	2	1	21	1	0	0	0	0	0	0	0	1	6721	1132	40	1		1	GPR98	5	90000211	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		90000211	90915049	37	2420											
GRK6	2870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176859237	176859237	+	Missense_Mutation	SNP	G	G	C	rs139370245	byfrequency;alternate_allele	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	GRK6	NM_002082	exon4	c.G265C	p.E89Q	CAGGCCGAGTATG	.	143	17	161	1	G|1.000;A|0.000	602	C	176859237	G	C	176859237	3	2	21	1	0	0	0	0	1	0	0	0	6793	1059	37	4	279	4	GRK6	5	176859237	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	86859026	176859237	4056023	38	2421											
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178039797	178039797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CLK4	NM_020666	exon8	c.G921A	p.M307I	ACTTACCATTTTA	.	119	6	116	0	.	359	T	178039797	C	T	178039797	3	4	21	1	0	0	0	0	1	0	0	0	3539	608	21	3	548	3	CLK4	5	178039797	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	1180560	178039797	2875463	39	2422											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7580848	7580848	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	DSP	NM_004415	exon23	c.C4425T	p.T1475T	CAAAACCATCCAG	.	224	81	180	0	.	518	T	7580848	C	T	7580848	2	4	21	1	0	0	0	0	0	0	0	1	4781	581	21	3		3	DSP	6	7580848	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		7580848	163534219	40	2423											
KIF13A	63971	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17764996	17764996	+	Missense_Mutation	SNP	C	C	T	rs184686655		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	KIF13A	NM_022113	exon39	c.G4763A	p.R1588H	GGGCTACGGGACA	.	207	75	152	2	C|0.999;T|0.000	137	T	17764996	C	T	17764996	3	4	21	1	0	0	0	0	1	0	0	0	8274	536	19	1	683	1	KIF13A	6	17764996	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	10184148	17764996	153350071	41	2424											
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30638843	30638843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	DHX16	NM_003587	exon2	c.A416C	p.E139A	GAAGCCTCTTCCT	.	197	17	155	0	.	228	G	30638843	T	G	30638843	3	3	21	1	0	0	0	0	1	0	0	0	4502	1551	54	5	2785	5	DHX16	6	30638843	Missense_Mutation	SNP	T	TCGA-BW-A5NP-01A-11D-A27I-10	12873847	30638843	140476224	42	2425											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30672574	30672574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	MDC1	NM_014641	exon10	c.C4386A	p.D1462E	AGGCTGGTCTGTG	.	158	52	126	0	.	273	T	30672574	G	T	30672574	3	4	21	1	0	0	0	0	1	0	0	0	9403	1252	44	3	1907	3	MDC1	6	30672574	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	33731	30672574	140442493	43	2426											
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1594988	1594988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TMEM184A	NM_001097620	exon2	c.G133A	p.A45T	AGGGGGCCCCCTG	.	58	32	53	0	.	90	T	1594988	C	T	1594988	3	4	21	1	0	0	0	0	1	0	0	0	16101	739	26	3	1140	3	TMEM184A	7	1594988	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		1594988	157543675	44	2427											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48567919	48567919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ABCA13	NM_152701	exon55	c.G14332A	p.A4778T	GGACATGCTATCA	.	77	14	69	0	.	521	A	48567919	G	A	48567919	3	1	21	1	0	0	0	0	1	0	0	0	31	1319	46	3	14379	3	ABCA13	7	48567919	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	46972931	48567919	110570744	45	2428											
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107423494	107423494	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	SLC26A3	NM_000111	exon10	c.C1164T	p.F388F	TCCTCTGAATACT	.	166	64	179	0	.	94	A	107423494	G	A	107423494	2	1	21	1	0	0	0	0	0	0	0	1	14518	1281	45	3		3	SLC26A3	7	107423494	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	58855575	107423494	51715169	46	2429											
KIAA1147	57189	hgsc.bcm.edu;bcgsc.ca	37	7	141373871	141373872	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	KIAA1147	NM_001080392	exon4	c.677_678insGA	p.M226fs	ACCTTCATCTCAG	.	126	60	129	0	.	69	TC	141373872	-	TC	141373871	7	5	21	1	0	1	1	0	0	0	0	0	8210	217	8	0	714	0	KIAA1147	7	141373871	Frame_Shift_Ins	INS	-	TCGA-BW-A5NP-01A-11D-A27I-10	33950377	141373871	17764792	47	2430											
LRP12	29967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	105510064	105510064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	LRP12	NM_013437	exon5	c.G716A	p.C239Y	CCATCACATTTTA	.	235	36	284	2	.	90	T	105510064	C	T	105510064	3	4	21	1	0	0	0	0	1	0	0	0	8954	478	17	3	1875	3	LRP12	8	105510064	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		105510064	40853958	48	2431											
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131181257	131181257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ASAP1	NM_018482	exon10	c.T803G	p.L268R	GCAGCCAGTTTTT	.	96	34	94	0	.	95	C	131181257	A	C	131181257	3	2	21	1	0	0	0	0	1	0	0	0	1010	188	7	5	2670	5	ASAP1	8	131181257	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	25671193	131181257	15182765	49	2432											
TEX10	54881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103092435	103092435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TEX10	NM_001161584	exon6	c.G1276C	p.V426L	AGAGAACTGTGCA	.	65	29	72	0	.	92	G	103092435	C	G	103092435	3	3	21	1	0	0	0	0	1	0	0	0	15769	565	20	4	1562	4	TEX10	9	103092435	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		103092435	38120996	50	2433											
ASB13	79754	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5683746	5683746	+	Silent	SNP	G	G	A	rs144206251	alternate_allele	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ASB13	NM_024701	exon5	c.C696T	p.F232F	GTACTCGAAGCAC	.	92	59	117	1	G|1.000;T|0.000	227	A	5683746	G	A	5683746	2	1	21	1	0	0	0	0	0	0	0	1	1017	1049	37	1		1	ASB13	10	5683746	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		5683746	129851001	51	2434											
PLAU	5328	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75673403	75673403	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	PLAU	NM_002658	exon7	c.C567T	p.N189N	CGAGAACCAGCCC	.	161	85	164	1	.	118	T	75673403	C	T	75673403	2	4	21	1	0	0	0	0	0	0	0	1	12022	506	18	3		3	PLAU	10	75673403	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	69989657	75673403	59861344	52	2435											
GHITM	27069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	85902445	85902445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	GHITM	NM_014394	exon3	c.G164A	p.R55H	TCCGGCGTGGGAG	.	128	8	96	0	.	90	A	85902445	G	A	85902445	3	1	21	1	0	0	0	0	1	0	0	0	6370	1145	40	1	170	1	GHITM	10	85902445	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	10229042	85902445	49632302	53	2436											
ATRNL1	26033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117059734	117059734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ATRNL1	NM_207303	exon16	c.G2606A	p.G869D	CAAATGGCCTTGT	.	153	52	190	1	.	96	A	117059734	G	A	117059734	3	1	21	1	0	0	0	0	1	0	0	0	1207	1203	42	3	2668	3	ATRNL1	10	117059734	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	31157289	117059734	18475013	54	2437											
AGBL2	79841	broad.mit.edu;ucsc.edu	37	11	47727469	47727469	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	AGBL2	NM_024783	exon5	c.G233A	p.W78X	ATAGGCCCTAGAA	.	102	52	151	1	.	92	T	47727469	C	T	47727469	4	4	21	1	0	0	0	0	0	1	0	0	376	637	22	3	2535	3	AGBL2	11	47727469	Nonsense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		47727469	87279047	55	2438											
FEN1	2237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61563319	61563319	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	FEN1	NM_004111	exon2	c.C486T	p.S162S	GGCCAGCTGTGCT	.	69	23	94	0	.	660	T	61563319	C	T	61563319	2	4	21	1	0	0	0	0	0	0	0	1	5812	796	28	3		3	FEN1	11	61563319	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	13835850	61563319	73443197	56	2439											
CNIH2	254263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66050237	66050238	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	.	.	.	.	p.C62L	ATCTGCTGCCTCC	.	68	10	156	0	.	.	CT	66050238	TG	CT	66050237	3	2	21	1	0	0	0	0	1	0	0	0	3603	1580	55	2	194	2	CNIH2	11	66050237	Missense_Mutation	DNP	TG	TCGA-BW-A5NP-01A-11D-A27I-10	4486918	66050237	68956279	57	2440	17	2									
CNIH2	254263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66050239	66050239	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CNIH2	NM_182553	exon3	c.C186T	p.C62C	CTGCTGCCTCCTG	.	69	10	154	0	.	90	T	66050239	C	T	66050239	2	4	21	1	0	0	0	0	0	0	0	1	3603	747	26	3		3	CNIH2	11	66050239	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	2	66050239	68956277	58	2441	17	2									
PGR	5241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	100996842	100996842	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	PGR	NM_000926	exon2	c.T1685G	p.L562X	TGAGGTAATGACT	.	102	19	112	0	.	652	C	100996842	A	C	100996842	4	2	21	1	0	0	0	0	0	1	0	0	11805	372	13	5	1144	5	PGR	11	100996842	Nonsense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	34946603	100996842	34009674	59	2442											
FLI1	2313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128680417	128680417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	FLI1	NM_002017	exon9	c.G893A	p.S298N	ACGCCAGCTGTAT	.	43	13	67	1	.	1084	A	128680417	G	A	128680417	3	1	21	1	0	0	0	0	1	0	0	0	5924	971	34	3	927	3	FLI1	11	128680417	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	27683575	128680417	6326099	60	2443											
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu	37	12	48389497	48389498	+	In_Frame_Ins	INS	-	-	CACCAGGTT	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	COL2A1	NM_001844	exon10	c.704_705insAACCTGGTG	p.V235delinsEPGV	ACAGAGACACCAG	.	217	21	291	0	.	92	CACCAGGTT	48389498	-	CACCAGGTT	48389497	7	5	21	1	0	1	1	0	0	0	0	0	3687	275	10	0	3939	0	COL2A1	12	48389497	In_Frame_Ins	INS	-	TCGA-BW-A5NP-01A-11D-A27I-10		48389497	85462398	61	2444											
AQP5	362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50358790	50358790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	AQP5	NM_001651	exon4	c.C628T	p.P210S	GTAGGGCCCATCG	.	82	49	151	0	.	90	T	50358790	C	T	50358790	3	4	21	1	0	0	0	0	1	0	0	0	829	739	26	3	642	3	AQP5	12	50358790	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	1969293	50358790	83493105	62	2445											
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28964106	28964106	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	FLT1	NM_002019	exon13	c.C1796G	p.T599R	TGCATTGTTCTGT	.	238	27	230	0	.	1406	C	28964106	G	C	28964106	3	2	21	1	0	0	0	0	1	0	0	0	5941	1377	48	4	2477	4	FLT1	13	28964106	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		28964106	86205772	63	2446											
EDNRB	1910	broad.mit.edu;bcgsc.ca	37	13	78477636	78477636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	EDNRB	NM_001201397	exon3	c.T860A	p.I287N	CTGTCAATACTCA	.	111	49	119	2	.	522	T	78477636	A	T	78477636	3	4	21	1	0	0	0	0	1	0	0	0	4920	101	4	4	883	4	EDNRB	13	78477636	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	49513530	78477636	36692242	64	2447											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42054412	42054412	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	MGA	NM_001164273	exon22	c.G7596A	p.K2532K	AAAGAAGATGGGA	.	170	94	189	1	.	522	A	42054412	G	A	42054412	2	1	21	1	0	0	0	0	0	0	0	1	9540	933	33	3		3	MGA	15	42054412	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10		42054412	60476980	65	2448											
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45387780	45387780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	DUOX2	NM_014080	exon31	c.G4094A	p.G1365E	AACGGTCCATCAA	.	87	39	127	0	.	95	T	45387780	C	T	45387780	3	4	21	1	0	0	0	0	1	0	0	0	4801	855	30	3	568	3	DUOX2	15	45387780	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	3333368	45387780	57143612	66	2449											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77025616	77025616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	SCAPER	NM_020843	exon15	c.G1976A	p.R659H	CTCTGACGCTCTT	.	109	44	117	0	.	137	T	77025616	C	T	77025616	3	4	21	1	0	0	0	0	1	0	0	0	13878	536	19	1	2294	1	SCAPER	15	77025616	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	31637836	77025616	25505776	67	2450											
ABHD2	11057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89738537	89738537	+	Silent	SNP	C	C	T	rs149586205	byfrequency	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ABHD2	NM_007011	exon15	c.C1161T	p.P387P	GTTCCCCGAGCCC	.	122	17	129	0	C|1.000;T|0.000	227	T	89738537	C	T	89738537	2	4	21	1	0	0	0	0	0	0	0	1	82	639	23	1		1	ABHD2	15	89738537	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	12712921	89738537	12792855	68	2451											
IGF1R	3480	ucsc.edu;bcgsc.ca	37	15	99454654	99454654	+	Missense_Mutation	SNP	G	G	A	rs201778894		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	IGF1R	NM_000875	exon7	c.G1573A	p.V525I	TTCACCGTTTACT	.	173	71	198	2	G|0.999;A|0.000	1490	A	99454654	G	A	99454654	3	1	21	1	0	0	0	0	1	0	0	0	7571	1145	40	1	1599	1	IGF1R	15	99454654	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	9716117	99454654	3076738	69	2452											
TARSL2	123283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	102252128	102252128	+	Missense_Mutation	SNP	G	G	A	rs146271638	byfrequency	TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	TARSL2	NM_152334	exon5	c.C767T	p.P256L	ATGGGCGGACCGT	.	163	7	183	0	G|1.000;A|0.000	92	A	102252128	G	A	102252128	3	1	21	1	0	0	0	0	1	0	0	0	15558	1116	39	1	1701	1	TARSL2	15	102252128	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	2797474	102252128	279264	70	2453											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	347721	347721	+	Splice_Site	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	AXIN1	NM_181050	exon7	c.1784+1G>A	.	CGCTCACCTGTGG	.	7	7	16	0	.	684	T	347721	C	T	347721	5	4	21	1	0	0	0	0	0	0	1	0	1236	521	18	3	827	3	AXIN1	16	347721	Splice_Site	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		347721	90007032	71	2454											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76482022	76482022	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	CNTNAP4	NM_138994	exon5	c.G577C	p.D193H	CAGAGTGATGGGA	.	77	70	146	0	.	70	C	76482022	G	C	76482022	3	2	21	1	0	0	0	0	1	0	0	0	3649	1290	45	4	683	4	CNTNAP4	16	76482022	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	76134301	76482022	13872731	72	2455											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18055202	18055202	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	MYO15A	NM_016239	exon40	c.T7830A	p.H2610Q	CCCTCATGAGGAG	.	139	39	183	0	.	97	A	18055202	T	A	18055202	3	1	21	1	0	0	0	0	1	0	0	0	10063	1461	51	4	7984	4	MYO15A	17	18055202	Missense_Mutation	SNP	T	TCGA-BW-A5NP-01A-11D-A27I-10		18055202	63140008	73	2456											
SOST	50964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41836014	41836014	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	SOST	NM_025237	exon1	c.T96A	p.D32E	CGTGGCATCATTC	.	71	25	100	0	.	90	T	41836014	A	T	41836014	3	4	21	1	0	0	0	0	1	0	0	0	14938	214	8	4	553	4	SOST	17	41836014	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	23780812	41836014	39359196	74	2457											
ITGB4	3691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73729759	73729759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ITGB4	NM_001005731	exon13	c.G1643A	p.G548E	CTTCCGGGTTCCT	.	45	5	89	0	.	227	A	73729759	G	A	73729759	3	1	21	1	0	0	0	0	1	0	0	0	7897	1232	43	3	1689	3	ITGB4	17	73729759	Missense_Mutation	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	31893745	73729759	7465451	75	2458											
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32428268	32428268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	DTNA	NM_001390	exon13	c.A1274G	p.E425G	TGCTTGAGAGTTC	.	45	42	87	0	.	153	G	32428268	A	G	32428268	3	3	21	1	0	0	0	0	1	0	0	0	4788	304	11	2	1359	2	DTNA	18	32428268	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10		32428268	45648980	76	2459											
ADAMTSL5	339366	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1510383	1510383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ADAMTSL5	NM_213604	exon4	c.G236A	p.R79H	CAGAGGCGGTACT	.	16	5	17	1	.	90	T	1510383	C	T	1510383	3	4	21	1	0	0	0	0	1	0	0	0	278	768	27	1	1215	1	ADAMTSL5	19	1510383	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		1510383	57618600	77	2460											
GTF2F1	2962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6381584	6381584	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	GTF2F1	NM_002096	exon8	c.G879A	p.Q293Q	CTCCTGCTGCGGC	.	9	6	15	0	.	115	T	6381584	C	T	6381584	2	4	21	1	0	0	0	0	0	0	0	1	6858	796	28	3		3	GTF2F1	19	6381584	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	4871201	6381584	52747399	78	2461											
ZNF709	163051	broad.mit.edu;bcgsc.ca	37	19	12576177	12576177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	ZNF709	NM_152601	exon4	c.G559A	p.E187K	TTCTTTCATGTAT	.	103	6	101	0	.	90	T	12576177	C	T	12576177	3	4	21	1	0	0	0	0	1	0	0	0	18110	835	29	3	1370	3	ZNF709	19	12576177	Missense_Mutation	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10	6194593	12576177	46552806	79	2462											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42839240	42839240	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	MEGF8	NM_001271938	exon4	c.G612A	p.L204L	TGACCTGCACCTG	.	54	8	104	0	.	23	A	42839240	G	A	42839240	2	1	21	1	0	0	0	0	0	0	0	1	9463	1306	46	3		3	MEGF8	19	42839240	Silent	SNP	G	TCGA-BW-A5NP-01A-11D-A27I-10	30263063	42839240	16289743	80	2463											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41427743	41427743	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	DSCAM	NM_001271534	exon29	c.G4944T	p.T1648T	GCTTAACGTATCT	.	152	79	225	0	.	101	A	41427743	C	A	41427743	2	1	21	1	0	0	0	0	0	0	0	1	4768	523	19	1		1	DSCAM	21	41427743	Silent	SNP	C	TCGA-BW-A5NP-01A-11D-A27I-10		41427743	6702152	81	2464											
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129147853	129147853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	BCORL1	NM_021946	exon3	c.A1105G	p.T369A	CCTTCTACCCCCA	.	21	12	32	0	.	294	G	129147853	A	G	129147853	3	3	21	1	0	0	0	0	1	0	0	0	1387	391	14	2	1115	2	BCORL1	23	129147853	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10		129147853	26122707	82	2465											
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129162763	129162763	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NP-01A-11D-A27I-10	TCGA-BW-A5NP-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c00925b-7328-4db0-b930-04aab2d80719	600ba105-b0f1-4fba-b1ec-0bbfe622e6cf	.	BCORL1	NM_021946	exon7	c.A4232T	p.E1411V	GCCTTGAAAATTC	.	174	90	199	0	.	294	T	129162763	A	T	129162763	3	4	21	1	0	0	0	0	1	0	0	0	1387	246	9	4	4258	4	BCORL1	23	129162763	Missense_Mutation	SNP	A	TCGA-BW-A5NP-01A-11D-A27I-10	14910	129162763	26107797	83	2466											
PER3	8863	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7887614	7887614	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PER3	NM_016831	exon17	c.A2601G	p.P867P	TTTGCCATGTCCA	.	211	83	145	1	.	93	G	7887614	A	G	7887614	2	3	22	1	0	0	0	0	0	0	0	1	11731	204	8	2		2	PER3	1	7887614	Silent	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10		7887614	241363007	1	2467											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106299	27106300	+	Frame_Shift_Ins	INS	-	-	CTGGA	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ARID1A	NM_006015	exon20	c.5910_5911insCTGGA	p.L1970fs	TACCCTTCTGGAC	.	105	23	103	0	.	584	CTGGA	27106300	-	CTGGA	27106299	7	5	22	1	0	1	1	0	0	0	0	0	913	1770	62	0	5988	0	ARID1A	1	27106299	Frame_Shift_Ins	INS	-	TCGA-BW-A5NQ-01A-11D-A27I-10	19218685	27106299	222144322	2	2468											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu	37	1	62995020	62995020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DOCK7	NM_001271999	exon30	c.C3709G	p.R1237G	CCACTCGAGCCTT	.	117	6	94	0	.	92	C	62995020	G	C	62995020	3	2	22	1	0	0	0	0	1	0	0	0	4692	1066	37	4	2797	4	DOCK7	1	62995020	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	35888721	62995020	186255601	3	2469											
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97981322	97981322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DPYD	NM_000110	exon13	c.G1700T	p.G567V	CCCCATCCAGCTT	.	72	18	61	0	.	278	A	97981322	C	A	97981322	3	1	22	1	0	0	0	0	1	0	0	0	4745	855	30	3	1421	3	DPYD	1	97981322	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	34986302	97981322	151269299	4	2470											
LPPR5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99358645	99358645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001037317	exon6	c.T949C	p.F317L	CTGCGAAGGCAGT	.	115	52	116	0	.	.	G	99358645	A	G	99358645	3	3	22	1	0	0	0	0	1	0	0	0	8928	72	3	2	20	2	LPPR5	1	99358645	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	1377323	99358645	149891976	5	2471											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152282032	152282032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FLG	NM_002016	exon3	c.C5330G	p.S1777C	TGGGCGGACTCAG	.	434	99	365	0	.	106	C	152282032	G	C	152282032	3	2	22	1	0	0	0	0	1	0	0	0	5922	1174	41	4	6859	4	FLG	1	152282032	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	52923387	152282032	96968589	6	2472											
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155148663	155148663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TRIM46	NM_025058	exon3	c.G625T	p.A209S	CAGAAGGCCCAGC	.	50	25	44	0	.	228	T	155148663	G	T	155148663	3	4	22	1	0	0	0	0	1	0	0	0	16518	1203	42	3	635	3	TRIM46	1	155148663	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	2866631	155148663	94101958	7	2473											
OR6Y1	391112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158516972	158516972	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	OR6Y1	NM_001005189	exon1	c.G924A	p.K308K	TATGGTCTTTCTG	.	162	59	121	1	.	69	T	158516972	C	T	158516972	2	4	22	1	0	0	0	0	0	0	0	1	11213	912	32	3		3	OR6Y1	1	158516972	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	3368309	158516972	90733649	8	2474											
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183891363	183891363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RGL1	NM_015149	exon18	c.G2117A	p.S706N	TGACGAGCCAGGA	.	131	17	140	0	.	725	A	183891363	G	A	183891363	3	1	22	1	0	0	0	0	1	0	0	0	13276	971	34	3	2183	3	RGL1	1	183891363	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	25374391	183891363	65359258	9	2475											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186120388	186120388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HMCN1	NM_031935	exon94	c.G14665C	p.G4889R	GAATTTGGAATTG	.	85	22	86	0	.	113	C	186120388	G	C	186120388	3	2	22	1	0	0	0	0	1	0	0	0	7220	1349	47	4	15039	4	HMCN1	1	186120388	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	2229025	186120388	63130233	10	2476											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204197269	204197269	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PLEKHA6	NM_014935	exon21	c.G2973T	p.R991R	TTCAATCCGCTTC	.	84	31	59	0	.	654	A	204197269	C	A	204197269	2	1	22	1	0	0	0	0	0	0	0	1	12060	842	30	3		3	PLEKHA6	1	204197269	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	18076881	204197269	45053352	11	2477											
DUSP10	11221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	221879681	221879681	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DUSP10	NM_007207	exon3	c.C939T	p.T313T	AGGGGTGGTGGGG	.	110	55	118	1	.	659	A	221879681	G	A	221879681	2	1	22	1	0	0	0	0	0	0	0	1	4810	1335	47	3		3	DUSP10	1	221879681	Silent	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	17682412	221879681	27370940	12	2478											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247588695	247588695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP3	NM_183395	exon3	c.1950delC	p.F650fs	CTATTTCCCCAAG	.	238	96	254	0	.	674	-	247588695	C	-	247588695	7	5	22	1	0	1	0	1	0	0	0	0	10478	854	30	0	1960	0	NLRP3	1	247588695	Frame_Shift_Del	DEL	C	TCGA-BW-A5NQ-01A-11D-A27I-10	25709014	247588695	1661926	13	2479											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	1437304	1437304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TPO	NM_175719	exon4	c.G274A	p.E92K	GCAGCAGAGATAA	.	156	8	210	0	.	332	A	1437304	G	A	1437304	3	1	22	1	0	0	0	0	1	0	0	0	16407	943	33	3	284	3	TPO	2	1437304	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		1437304	241762069	14	2480											
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55252314	55252314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RTN4	NM_020532	exon3	c.T2921C	p.V974A	TCTTTCACAAGAA	.	68	17	66	0	.	155	G	55252314	A	G	55252314	3	3	22	1	0	0	0	0	1	0	0	0	13728	159	6	2	723	2	RTN4	2	55252314	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	53815010	55252314	187947059	15	2481											
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96957523	96957523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SNRNP200	NM_014014	exon17	c.C2276T	p.T759I	ACTTCTGTGGAGG	.	39	7	46	0	.	162	A	96957523	G	A	96957523	3	1	22	1	0	0	0	0	1	0	0	0	14852	1377	48	3	4250	3	SNRNP200	2	96957523	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	41705209	96957523	146241850	16	2482											
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101648734	101648734	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TBC1D8	NM_001102426	exon11	c.G1887C	p.V629V	ACCGATCACTCGG	.	114	24	159	0	.	25	G	101648734	C	G	101648734	2	3	22	1	0	0	0	0	0	0	0	1	15622	813	29	4		4	TBC1D8	2	101648734	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	4691211	101648734	141550639	17	2483											
B3GALT1	8708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168725799	168725799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	B3GALT1	NM_020981	exon2	c.A250T	p.I84F	ATCCTCATCAGCA	.	76	15	109	0	.	94	T	168725799	A	T	168725799	3	4	22	1	0	0	0	0	1	0	0	0	1247	217	8	4	252	4	B3GALT1	2	168725799	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	67077065	168725799	74473574	18	2484											
SESTD1	91404	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180036950	180036950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SESTD1	NM_178123	exon5	c.C266G	p.P89R	TCAGCTGGAACAA	.	99	27	138	1	.	228	C	180036950	G	C	180036950	3	2	22	1	0	0	0	0	1	0	0	0	14127	1348	47	4	1880	4	SESTD1	2	180036950	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	11311151	180036950	63162423	19	2485											
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187540572	187540572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ITGAV	NM_002210	exon28	c.C2846A	p.S949Y	CCTATTCTCTGAA	.	103	26	125	0	.	653	A	187540572	C	A	187540572	3	1	22	1	0	0	0	0	1	0	0	0	7888	913	32	3	3007	3	ITGAV	2	187540572	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	7503622	187540572	55658801	20	2486											
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187693382	187693382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZSWIM2	NM_182521	exon9	c.A1231G	p.R411G	TGTCTCTGTTTGA	.	52	16	57	0	.	93	C	187693382	T	C	187693382	3	2	22	1	0	0	0	0	1	0	0	0	18238	1588	55	2	674	2	ZSWIM2	2	187693382	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	152810	187693382	55505991	21	2487											
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192701015	192701015	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SDPR	NM_004657	exon2	c.G912A	p.E304E	TTCTCCCTCTCGG	.	76	19	94	0	.	92	T	192701015	C	T	192701015	2	4	22	1	0	0	0	0	0	0	0	1	13970	680	24	3		3	SDPR	2	192701015	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	5007633	192701015	50498358	22	2488											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197080657	197080657	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HECW2	NM_020760	exon28	c.A4539T	p.S1513S	TCGGAGTGAAGCA	.	58	21	43	0	.	668	A	197080657	T	A	197080657	2	1	22	1	0	0	0	0	0	0	0	1	7043	1683	59	4		4	HECW2	2	197080657	Silent	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	4379642	197080657	46118716	23	2489											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	238255172	238255172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	COL6A3	NM_004369	exon32	c.G7066T	p.G2356X	GGTCTCCCTTCTG	.	91	21	102	0	.	526	A	238255172	C	A	238255172	4	1	22	1	0	0	0	0	0	1	0	0	3701	632	22	3	2519	3	COL6A3	2	238255172	Nonsense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	41174515	238255172	4944201	24	2490											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	bycluster	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C110T	p.S37F	TCCATTCTGGTGC	.	257	96	253	0	.	24361	T	41266113	C	T	41266113	3	4	22	1	0	0	0	0	1	0	0	0	4016	913	32	3	116	3	CTNNB1	3	41266113	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		41266113	156756317	25	2491											
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58116537	58116537	+	Missense_Mutation	SNP	T	T	A	rs80356511	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FLNB	NM_001457	exon25	c.T4292A	p.L1431Q	CCGGGCTGGGCTC	.	101	20	109	0	.	593	A	58116537	T	A	58116537	3	1	22	1	0	0	0	0	1	0	0	0	5934	1580	55	4	4390	4	FLNB	3	58116537	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	16850424	58116537	139905893	26	2492											
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134338015	134338015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KY	NM_178554	exon8	c.G685T	p.A229S	GGCCAGCATAGCC	.	206	53	176	0	.	24	A	134338015	C	A	134338015	3	1	22	1	0	0	0	0	1	0	0	0	8586	710	25	3	1316	3	KY	3	134338015	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	76221478	134338015	63684415	27	2493											
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	157146119	157146120	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	VEPH1	NM_001167911	exon5	c.688_689insA	p.Q230fs	CGAGTTGTTTTTT	.	132	40	122	0	.	155	T	157146120	-	T	157146119	7	5	22	1	0	1	1	0	0	0	0	0	17151	1386	48	0	1853	0	VEPH1	3	157146119	Frame_Shift_Ins	INS	-	TCGA-BW-A5NQ-01A-11D-A27I-10	22808104	157146119	40876311	28	2494											
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193159259	193159259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ATP13A4	NM_032279	exon20	c.C2435A	p.P812Q	ACCTTTGGCAGTA	.	149	64	164	0	.	92	T	193159259	G	T	193159259	3	4	22	1	0	0	0	0	1	0	0	0	1126	1348	47	3	1199	3	ATP13A4	3	193159259	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	36013140	193159259	4863171	29	2495											
ZNF718	255403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	59340	59340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001039127	exon2	c.G21T	p.R7S	ATTCAGGGATGTG	.	308	18	328	0	.	.	T	59340	G	T	59340	3	4	22	1	0	0	0	0	1	0	0	0	18117	1223	43	3	27	3	ZNF718	4	59340	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		59340	191094936	30	2496											
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	7726889	7726889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SORCS2	NM_020777	exon20	c.C2620T	p.Q874X	CCCCTGCAGGCCC	.	56	12	61	0	.	91	T	7726889	C	T	7726889	4	4	22	1	0	0	0	0	0	1	0	0	14931	711	25	3	2698	3	SORCS2	4	7726889	Nonsense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	7667549	7726889	183427387	31	2497											
TAPT1	202018	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16165127	16165127	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAPT1	NM_153365	exon14	c.T1508A	p.I503N	TTGGTGATGGAGG	.	122	24	135	1	.	90	T	16165127	A	T	16165127	3	4	22	1	0	0	0	0	1	0	0	0	15551	333	12	4	199	4	TAPT1	4	16165127	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	8438238	16165127	174989149	32	2498											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39876002	39876002	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001100399	exon20	c.A2184T	p.A728A	CCTCTTTGCTTTT	.	69	14	55	0	.	.	A	39876002	T	A	39876002	2	1	22	1	0	0	0	0	0	0	0	1	11691	1799	63	4		4	PDS5A	4	39876002	Silent	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	23710875	39876002	151278274	33	2499											
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90035516	90035516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TIGD2	NM_145715	exon1	c.A1391G	p.K464R	CCAGTAAGAGTAG	.	81	15	96	0	.	90	G	90035516	A	G	90035516	3	3	22	1	0	0	0	0	1	0	0	0	15893	72	3	2	1393	2	TIGD2	4	90035516	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	50159514	90035516	101118760	34	2500											
ELF2	1998	hgsc.bcm.edu;bcgsc.ca	37	4	139983133	139983133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ELF2	NM_006874	exon5	c.G512A	p.R171K	CTCTGAGTCCATT	.	61	4	67	0	.	228	T	139983133	G	T	139983133	3	4	22	1	0	0	0	0	1	0	0	0	5054	1029	36	3	1101	3	ELF2	4	139983133	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	49947617	139983133	51171143	35	2501											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11384929	11384929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CTNND2	NM_001332	exon7	c.C1025T	p.S342F	GAGGAGGAGATGG	.	28	9	26	0	.	293	A	11384929	G	A	11384929	3	1	22	1	0	0	0	0	1	0	0	0	4020	1174	41	3	2716	3	CTNND2	5	11384929	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		11384929	169530331	36	2502											
CDH18	1016	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19747259	19747259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CDH18	NM_001167667	exon4	c.T315A	p.D105E	CGTGGTATCGTCA	.	144	28	159	1	.	159	T	19747259	A	T	19747259	3	4	22	1	0	0	0	0	1	0	0	0	3103	446	16	4	2097	4	CDH18	5	19747259	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	8362330	19747259	161168001	37	2503											
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21765180	21765180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CDH12	NM_004061	exon12	c.T1422A	p.N474K	CAGTATATTGACT	.	82	23	65	1	.	92	T	21765180	A	T	21765180	3	4	22	1	0	0	0	0	1	0	0	0	3098	446	16	4	978	4	CDH12	5	21765180	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	2017921	21765180	159150080	38	2504											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70840961	70840961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BDP1	NM_018429	exon32	c.A6659T	p.D2220V	GTTTGGATAGGGG	.	82	17	101	0	.	92	T	70840961	A	T	70840961	3	4	22	1	0	0	0	0	1	0	0	0	1395	333	12	4	6785	4	BDP1	5	70840961	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	49075781	70840961	110074299	39	2505											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89943506	89943506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GPR98	NM_032119	exon17	c.A3214G	p.I1072V	CAGAGCATATCCA	.	107	52	128	0	.	103	G	89943506	A	G	89943506	3	3	22	1	0	0	0	0	1	0	0	0	6721	217	8	2	3280	2	GPR98	5	89943506	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	19102545	89943506	90971754	40	2506											
KCNN2	3781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	113798833	113798833	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KCNN2	NM_021614	exon4	c.C1089T	p.D363D	TGGTGACATGGTA	.	306	62	283	0	.	92	T	113798833	C	T	113798833	2	4	22	1	0	0	0	0	0	0	0	1	8079	477	17	3		3	KCNN2	5	113798833	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	23855327	113798833	67116427	41	2507											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150885501	150885501	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FAT2	NM_001447	exon23	c.C12675T	p.G4225G	GGGGAAGCCCCCA	.	32	8	19	0	.	96	A	150885501	G	A	150885501	2	1	22	1	0	0	0	0	0	0	0	1	5690	958	34	3		3	FAT2	5	150885501	Silent	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	37086668	150885501	30029759	42	2508											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	169689858	169689859	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LCP2	NM_005565	exon12	c.806_807insA	p.I269fs	GCTGGAATCGAGG	.	194	30	179	0	.	23	T	169689859	-	T	169689858	7	5	22	1	0	1	1	0	0	0	0	0	8692	101	4	0	835	0	LCP2	5	169689858	Frame_Shift_Ins	INS	-	TCGA-BW-A5NQ-01A-11D-A27I-10	18804357	169689858	11225402	43	2509	18	2									
LCP2	3937	hgsc.bcm.edu;bcgsc.ca	37	5	169689860	169689860	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LCP2	NM_005565	exon12	c.G804A	p.S268S	TGGAATCGAGGGC	.	195	31	175	0	.	23	T	169689860	C	T	169689860	2	4	22	1	0	0	0	0	0	0	0	1	8692	871	31	1		1	LCP2	5	169689860	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	2	169689860	11225400	44	2510	18	2									
HRH2	3274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	175110734	175110734	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HRH2	NM_001131055	exon2	c.G498A	p.K166K	CAGCAAGGGCAAT	.	218	14	206	0	.	91	A	175110734	G	A	175110734	2	1	22	1	0	0	0	0	0	0	0	1	7356	991	35	3		3	HRH2	5	175110734	Silent	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	5420874	175110734	5804526	45	2511											
CCHCR1	54535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31113531	31113531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCHCR1	NM_001105564	exon11	c.G1635T	p.Q545H	GGGAAGCTGGGCG	.	78	25	92	0	.	91	A	31113531	C	A	31113531	3	1	22	1	0	0	0	0	1	0	0	0	2877	796	28	3	1012	3	CCHCR1	6	31113531	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		31113531	140001536	46	2512											
HSPA1L	3305	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778986	31778986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HSPA1L	NM_005527	exon2	c.T764G	p.I255S	TGGCTGATGTCCT	.	89	19	100	1	.	230	C	31778986	A	C	31778986	3	2	22	1	0	0	0	0	1	0	0	0	7410	333	12	5	1165	5	HSPA1L	6	31778986	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	665455	31778986	139336081	47	2513											
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105573357	105573357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BVES	NM_001199563	exon4	c.T448A	p.C150S	TCATGCAAAACTG	.	161	54	136	0	.	90	T	105573357	A	T	105573357	3	4	22	1	0	0	0	0	1	0	0	0	1575	130	5	4	654	4	BVES	6	105573357	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	73794371	105573357	65541710	48	2514											
FIG4	9896	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110086337	110086337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FIG4	NM_014845	exon14	c.A1556G	p.N519S	AACCTAATCTACA	.	154	53	150	2	.	69	G	110086337	A	G	110086337	3	3	22	1	0	0	0	0	1	0	0	0	5888	101	4	2	1610	2	FIG4	6	110086337	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	4512980	110086337	61028730	49	2515											
TMEM200A	114801	broad.mit.edu;bcgsc.ca	37	6	130761614	130761614	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TMEM200A	NM_001258277	exon3	c.47delG	p.R16fs	TGAAAAGGCAAGA	.	70	8	66	0	.	23	-	130761614	G	-	130761614	7	5	22	1	0	1	0	1	0	0	0	0	16120	1000	35	0	49	0	TMEM200A	6	130761614	Frame_Shift_Del	DEL	G	TCGA-BW-A5NQ-01A-11D-A27I-10	20675277	130761614	40353453	50	2516											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143095836	143095836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HIVEP2	NM_006734	exon5	c.T40G	p.S14A	ACCTTGAGGTAGC	.	237	89	177	0	.	95	C	143095836	A	C	143095836	3	2	22	1	0	0	0	0	1	0	0	0	7187	304	11	5	7324	5	HIVEP2	6	143095836	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	12334222	143095836	28019231	51	2517											
GNAI1	2770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	79833109	79833109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GNAI1	NM_002069	exon5	c.T551C	p.I184T	CAGGAATTGTTGA	.	150	40	102	0	.	653	C	79833109	T	C	79833109	3	2	22	1	0	0	0	0	1	0	0	0	6504	1493	52	2	569	2	GNAI1	7	79833109	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10		79833109	79305554	52	2518											
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86526919	86526919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA1324L	NM_001142749	exon19	c.G2588A	p.C863Y	AACGTACACCCAT	.	122	30	98	0	.	97	T	86526919	C	T	86526919	3	4	22	1	0	0	0	0	1	0	0	0	8224	478	17	3	517	3	KIAA1324L	7	86526919	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	6693810	86526919	72611744	53	2519											
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129951882	129951882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CPA4	NM_016352	exon10	c.A998T	p.K333M	AGGACAAGGTGGC	.	127	34	99	0	.	515	T	129951882	A	T	129951882	3	4	22	1	0	0	0	0	1	0	0	0	3792	72	3	4	1036	4	CPA4	7	129951882	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	43424963	129951882	29186781	54	2520											
LOXL2	4017	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23217774	23217774	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LOXL2	NM_002318	exon3	c.C360T	p.P120P	CCAGATGGGCCCT	.	66	14	52	1	.	272	A	23217774	G	A	23217774	2	1	22	1	0	0	0	0	0	0	0	1	8900	1335	47	3		3	LOXL2	8	23217774	Silent	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		23217774	123146248	55	2521											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113240991	113240991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CSMD3	NM_198123	exon70	c.A10958C	p.K3653T	CTTTGTTTATAAA	.	33	19	37	0	.	1132	G	113240991	T	G	113240991	3	3	22	1	0	0	0	0	1	0	0	0	3946	1841	64	5	173	5	CSMD3	8	113240991	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	90023217	113240991	33123031	56	2522											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133906037	133906037	+	Missense_Mutation	SNP	A	A	T	rs61736740	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TG	NM_003235	exon11	c.A2864T	p.E955V	TGGGGGAGAGTTT	.	247	109	236	1	A|0.987;C|0.013	145	T	133906037	A	T	133906037	3	4	22	1	0	0	0	0	1	0	0	0	15810	304	11	4	2906	4	TG	8	133906037	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	20665046	133906037	12457985	57	2523											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5922603	5922603	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA2026	NM_001017969	exon8	c.T3393C	p.G1131G	TTCTGTACCTTTC	.	93	36	105	0	.	92	G	5922603	A	G	5922603	2	3	22	1	0	0	0	0	0	0	0	1	8270	378	14	2		2	KIAA2026	9	5922603	Silent	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10		5922603	135290828	58	2524											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113312196	113312196	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SVEP1	NM_153366	exon2	c.G720A	p.E240E	GTGCTCCTCCTTT	.	189	38	207	0	.	75	T	113312196	C	T	113312196	2	4	22	1	0	0	0	0	0	0	0	1	15417	680	24	3		3	SVEP1	9	113312196	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	107389593	113312196	27901235	59	2525											
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7064361	7064361	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP14	NM_176822	exon4	c.C1104G	p.V368V	CCAAGTCCCCCTA	.	102	15	77	0	.	295	G	7064361	C	G	7064361	2	3	22	1	0	0	0	0	0	0	0	1	10476	842	30	4		4	NLRP14	11	7064361	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		7064361	127942155	60	2526											
MRGPRX1	259249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18955438	18955438	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MRGPRX1	NM_147199	exon1	c.G894T	p.A298A	CTCAGACGCGTCC	.	89	22	67	0	.	92	A	18955438	C	A	18955438	2	1	22	1	0	0	0	0	0	0	0	1	9766	523	19	1		1	MRGPRX1	11	18955438	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	11891077	18955438	116051078	61	2527											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20699518	20699518	+	Silent	SNP	C	C	A	rs146112225	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NELL1	NM_006157	exon2	c.C96A	p.I32I	GGATATCGTCACC	.	231	79	178	0	C|1.000;T|0.000	155	A	20699518	C	A	20699518	2	1	22	1	0	0	0	0	0	0	0	1	10333	874	31	1		1	NELL1	11	20699518	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	1744080	20699518	114306998	62	2528											
OR5W2	390148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55681596	55681596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	OR5W2	NM_001001960	exon1	c.G463A	p.D155N	AAGCATCTGCTAT	.	83	35	77	0	.	70	T	55681596	C	T	55681596	3	4	22	1	0	0	0	0	1	0	0	0	11185	913	32	3	471	3	OR5W2	11	55681596	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	34982078	55681596	79324920	63	2529											
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94861677	94861677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ENDOD1	NM_015036	exon2	c.C437G	p.P146R	TTTACCCATTCTC	.	254	81	262	0	.	68	G	94861677	C	G	94861677	3	3	22	1	0	0	0	0	1	0	0	0	5114	594	21	4	443	4	ENDOD1	11	94861677	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	39180081	94861677	40144839	64	2530											
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116693445	116693445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	APOA4	NM_000482	exon2	c.A106G	p.S36G	GCTGGCTGAAGTA	.	119	41	97	0	.	22	C	116693445	T	C	116693445	3	2	22	1	0	0	0	0	1	0	0	0	783	1580	55	2	1092	2	APOA4	11	116693445	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	21831768	116693445	18313071	65	2531											
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1993990	1993990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CACNA2D4	NM_172364	exon11	c.G1216T	p.G406C	CGGCGCCGTCGCT	.	184	42	197	0	.	23	A	1993990	C	A	1993990	3	1	22	1	0	0	0	0	1	0	0	0	2551	652	23	1	2309	1	CACNA2D4	12	1993990	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		1993990	131857905	66	2532											
SMARCC2	6601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56563945	56563945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SMARCC2	NM_139067	exon23	c.G2395A	p.E799K	TCTTCTCATCTGT	.	57	5	74	0	.	229	T	56563945	C	T	56563945	3	4	22	1	0	0	0	0	1	0	0	0	14776	835	29	3	1370	3	SMARCC2	12	56563945	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	54569955	56563945	77287950	67	2533											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70986132	70986132	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PTPRB	NM_001109754	exon7	c.A1710G	p.R570R	ATAAAGTCGACCG	.	97	11	114	0	.	226	C	70986132	T	C	70986132	2	2	22	1	0	0	0	0	0	0	0	1	12796	1654	58	2		2	PTPRB	12	70986132	Silent	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	14422187	70986132	62865763	68	2534											
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118639243	118639243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAOK3	NM_016281	exon12	c.C845T	p.P282L	CGTAGTGGCCGGT	.	107	44	82	0	.	933	A	118639243	G	A	118639243	3	1	22	1	0	0	0	0	1	0	0	0	15546	1348	47	3	1891	3	TAOK3	12	118639243	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	47653111	118639243	15212652	69	2535											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124402341	124402341	+	Missense_Mutation	SNP	C	C	T	rs202063832		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DNAH10	NM_207437	exon63	c.C10859T	p.T3620I	AGGAGACCAAATC	.	174	8	176	0	C|0.999;T|0.001	95	T	124402341	C	T	124402341	3	4	22	1	0	0	0	0	1	0	0	0	4598	507	18	3	11109	3	DNAH10	12	124402341	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	5763098	124402341	9449554	70	2536											
NBEA	26960	hgsc.bcm.edu;ucsc.edu	37	13	35692392	35692392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon15	c.C2110T	p.Q704X	GAACTTCAGAGTA	.	54	13	111	0	.	144	T	35692392	C	T	35692392	4	4	22	1	0	0	0	0	0	1	0	0	10187	827	29	3	2168	3	NBEA	13	35692392	Nonsense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		35692392	79477486	71	2537	19	2									
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35692394	35692394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon15	c.G2112C	p.Q704H	ACTTCAGAGTATA	.	56	13	112	0	.	144	C	35692394	G	C	35692394	3	2	22	1	0	0	0	0	1	0	0	0	10187	933	33	4	2170	4	NBEA	13	35692394	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	2	35692394	79477484	72	2538	19	2									
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35734090	35734090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon22	c.T3782G	p.I1261S	GTATAATTTCAGA	.	62	22	38	0	.	144	G	35734090	T	G	35734090	3	3	22	1	0	0	0	0	1	0	0	0	10187	1493	52	5	3868	5	NBEA	13	35734090	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	41696	35734090	79435788	73	2539											
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111932983	111932983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ARHGEF7	NM_001113511	exon16	c.G1747A	p.G583R	TCTGTGGGAAACC	.	119	32	120	0	.	232	A	111932983	G	A	111932983	3	1	22	1	0	0	0	0	1	0	0	0	911	1233	43	3	1809	3	ARHGEF7	13	111932983	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	76198893	111932983	3236895	74	2540											
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21487891	21487892	+	Missense_Mutation	DNP	GA	GA	TG	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	.	.	.	p.S208H	TTTCCAGAGAGCT	.	87	27	72	0	.	.	TG	21487892	GA	TG	21487891	3	4	22	1	0	0	0	0	1	0	0	0	10252	942	33	3	520	3	NDRG2	14	21487891	Missense_Mutation	DNP	GA	TCGA-BW-A5NQ-01A-11D-A27I-10		21487891	85861649	75	2541											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64554464	64554464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SYNE2	NM_182914	exon58	c.A11560C	p.I3854L	TCAATAATTTTTG	.	110	34	107	0	.	164	C	64554464	A	C	64554464	3	2	22	1	0	0	0	0	1	0	0	0	15443	101	4	5	11786	5	SYNE2	14	64554464	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	43066573	64554464	42795076	76	2542											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89206879	89206879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	EML5	NM_183387	exon5	c.G563A	p.R188Q	ACACCTCGTTTTG	.	125	35	121	0	.	93	T	89206879	C	T	89206879	3	4	22	1	0	0	0	0	1	0	0	0	5100	884	31	1	5526	1	EML5	14	89206879	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	24652415	89206879	18142661	77	2543											
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102792471	102792471	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZNF839	NM_018335	exon2	c.C438T	p.A146A	TATCGCCAGCCCT	.	67	14	98	0	.	91	T	102792471	C	T	102792471	2	4	22	1	0	0	0	0	0	0	0	1	18185	581	21	3		3	ZNF839	14	102792471	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	13585592	102792471	4557069	78	2544											
MKRN3	7681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	23812394	23812394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MKRN3	NM_005664	exon1	c.G1465T	p.E489X	TTCTCTGAGGACC	.	124	40	121	0	.	1011	T	23812394	G	T	23812394	4	4	22	1	0	0	0	0	0	1	0	0	9608	1291	45	3	1467	3	MKRN3	15	23812394	Nonsense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		23812394	78718998	79	2545											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51756896	51756896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DMXL2	NM_001174116	exon32	c.T7784G	p.L2595R	GGTTCTAGCATTG	.	65	15	120	0	.	99	C	51756896	A	C	51756896	3	2	22	1	0	0	0	0	1	0	0	0	4595	420	15	5	1377	5	DMXL2	15	51756896	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	27944502	51756896	50774496	80	2546											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	79382797	79382799	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RASGRF1	NM_001145648	exon1	c.42_44del	p.14_15del	AGTCCCAGGGACG	.	56	10	94	0	.	662	-	79382799	AGG	-	79382797	7	5	22	1	0	1	0	1	0	0	0	0	13072	188	7	0	3889	0	RASGRF1	15	79382797	In_Frame_Del	DEL	AGG	TCGA-BW-A5NQ-01A-11D-A27I-10	27625901	79382797	23148595	81	2547											
BAIAP3	8938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1384728	1384728	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BAIAP3	NM_003933	exon1	c.C66A	p.I22I	CGCCATCGGCTTC	.	79	35	99	0	.	91	A	1384728	C	A	1384728	2	1	22	1	0	0	0	0	0	0	0	1	1304	874	31	1		1	BAIAP3	16	1384728	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		1384728	88970025	82	2548											
RILP	83547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1549897	1549897	+	Missense_Mutation	SNP	G	G	A	rs200277401		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RILP	NM_031430	exon8	c.C1045T	p.R349W	TACCCCGATACCA	.	56	17	37	0	G|0.999;A|0.000	91	A	1549897	G	A	1549897	3	1	22	1	0	0	0	0	1	0	0	0	13360	1057	37	1	164	1	RILP	17	1549897	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		1549897	79645313	83	2549											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578275	7578275	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	TP53,NS,carcinoma,0	TP53	NM_000546	exon6	c.C574T	p.Q192X	GATGCTGAGGAGG	.	113	47	167	0	.	70225	A	7578275	G	A	7578275	4	1	22	1	0	0	0	0	0	1	0	0	16378	1299	45	3	720	3	TP53	17	7578275	Nonsense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	6028378	7578275	73616935	84	2550											
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu	37	17	12013730	12013731	+	In_Frame_Ins	INS	-	-	ATT	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MAP2K4	NM_003010	exon6	c.672_673insATT	p.K224delinsKI	CTTGAAAATTATT	.	47	14	103	0	.	3134	ATT	12013731	-	ATT	12013730	7	5	22	1	0	1	1	0	0	0	0	0	9239	11	1	0	694	0	MAP2K4	17	12013730	In_Frame_Ins	INS	-	TCGA-BW-A5NQ-01A-11D-A27I-10	4435455	12013730	69181480	85	2551											
PIGS	94005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26888556	26888556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PIGS	NM_033198	exon6	c.T560A	p.V187D	ACCTGGACTATGC	.	130	49	144	0	.	289	T	26888556	A	T	26888556	3	4	22	1	0	0	0	0	1	0	0	0	11898	275	10	4	1135	4	PIGS	17	26888556	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	14874826	26888556	54306654	86	2552											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60038954	60038954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MED13	NM_005121	exon22	c.C5251A	p.P1751T	CATCAGGACTTCT	.	81	31	87	0	.	136	T	60038954	G	T	60038954	3	4	22	1	0	0	0	0	1	0	0	0	9430	1174	41	3	1309	3	MED13	17	60038954	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	33150398	60038954	21156256	87	2553											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6958645	6958645	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LAMA1	NM_005559	exon55	c.T7795C	p.L2599L	CATCCAATTGGAC	.	89	24	98	0	.	149	G	6958645	A	G	6958645	2	3	22	1	0	0	0	0	0	0	0	1	8605	98	4	2		2	LAMA1	18	6958645	Silent	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10		6958645	71118603	88	2554											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23854650	23854650	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAF4B	NM_005640	exon4	c.C621T	p.V207V	CAGTGTCGTCACA	.	129	21	187	0	.	71	T	23854650	C	T	23854650	2	4	22	1	0	0	0	0	0	0	0	1	15524	871	31	1		1	TAF4B	18	23854650	Silent	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10	16896005	23854650	54222598	89	2555											
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8032602	8032602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ELAVL1	NM_001419	exon5	c.A503G	p.N168S	TGACCATTGAAAC	.	146	46	146	0	.	90	C	8032602	T	C	8032602	3	2	22	1	0	0	0	0	1	0	0	0	5049	1493	52	2	485	2	ELAVL1	19	8032602	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10		8032602	51096381	90	2556											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	8196686	8196686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FBN3	NM_032447	exon14	c.T1742C	p.I581T	ACGCAGATGCCGG	.	54	8	42	0	.	100	G	8196686	A	G	8196686	3	3	22	1	0	0	0	0	1	0	0	0	5704	333	12	2	6887	2	FBN3	19	8196686	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10	164084	8196686	50932297	91	2557											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9015640	9015640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MUC16	NM_024690	exon29	c.A38183C	p.E12728A	ACTCTCTCTGTGG	.	172	58	201	0	.	566	G	9015640	T	G	9015640	3	3	22	1	0	0	0	0	1	0	0	0	9973	1551	54	5	5564	5	MUC16	19	9015640	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	818954	9015640	50113343	92	2558											
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14024108	14024108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CC2D1A	NM_017721	exon5	c.G506A	p.G169E	ATCGGGGGCTTAA	.	86	30	86	0	.	90	A	14024108	G	A	14024108	3	1	22	1	0	0	0	0	1	0	0	0	2726	1232	43	3	524	3	CC2D1A	19	14024108	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	5008468	14024108	45104875	93	2559											
ZNF714	148206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21299717	21299717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZNF714	NM_182515	exon5	c.T247G	p.L83V	GAGAATTTACAGT	.	177	51	171	0	.	67	G	21299717	T	G	21299717	3	3	22	1	0	0	0	0	1	0	0	0	18115	1838	64	5	257	5	ZNF714	19	21299717	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	7275609	21299717	37829266	94	2560											
CCNE1	898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30311721	30311721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCNE1	NM_001238	exon7	c.G575C	p.G192A	TTATTGGGATTTC	.	89	22	117	0	.	1270	C	30311721	G	C	30311721	3	2	22	1	0	0	0	0	1	0	0	0	2920	1232	43	4	597	4	CCNE1	19	30311721	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	9012004	30311721	28817262	95	2561											
KCTD15	79047	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34302696	34302696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KCTD15	NM_024076	exon7	c.G694T	p.D232Y	CAAAAGGATGTTC	.	51	8	86	1	.	91	T	34302696	G	T	34302696	3	4	22	1	0	0	0	0	1	0	0	0	8102	1188	41	3	712	3	KCTD15	19	34302696	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	3990975	34302696	24826287	96	2562											
C19orf55	148137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36256039	36256039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	C19orf55	NM_001039887	exon7	c.T731C	p.I244T	CCTTCATCCCTGA	.	68	15	79	0	.	23	C	36256039	T	C	36256039	3	2	22	1	0	0	0	0	1	0	0	0	1937	1435	50	2	757	2	C19orf55	19	36256039	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	1953343	36256039	22872944	97	2563											
DYRK1B	9149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40316849	40316849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DYRK1B	NM_004714	exon10	c.A1489G	p.I497V	CTGTGATAGGGGG	.	32	7	46	0	.	337	C	40316849	T	C	40316849	3	2	22	1	0	0	0	0	1	0	0	0	4855	1406	49	2	408	2	DYRK1B	19	40316849	Missense_Mutation	SNP	T	TCGA-BW-A5NQ-01A-11D-A27I-10	4060810	40316849	18812134	98	2564											
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42212653	42212653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CEACAM5	NM_004363	exon1	c.G3A	p.M1I	GACCATGGAGTCT	.	45	7	67	0	.	92	A	42212653	G	A	42212653	3	1	22	1	0	0	0	0	1	0	0	0	3195	1348	47	3	5	3	CEACAM5	19	42212653	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	1895804	42212653	16916330	99	2565											
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39817538	39817538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ERG	NM_001243432	exon4	c.T46G	p.L16V	CTGATAAGGCTTC	.	291	56	248	0	.	848	C	39817538	A	C	39817538	3	2	22	1	0	0	0	0	1	0	0	0	5222	69	3	5	1450	5	ERG	21	39817538	Missense_Mutation	SNP	A	TCGA-BW-A5NQ-01A-11D-A27I-10		39817538	8312357	100	2566											
TXN2	25828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36876748	36876748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TXN2	NM_012473	exon2	c.C137T	p.P46L	GGGTTGGGTGTTA	.	66	15	113	0	.	90	A	36876748	G	A	36876748	3	1	22	1	0	0	0	0	1	0	0	0	16788	1232	43	3	375	3	TXN2	22	36876748	Missense_Mutation	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10		36876748	14427818	101	2567											
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73960550	73960550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA2022	NM_001008537	exon3	c.G3842T	p.G1281V	CAATCTCCAGAAA	.	44	22	53	0	.	183	A	73960550	C	A	73960550	3	1	22	1	0	0	0	0	1	0	0	0	8269	855	30	3	716	3	KIAA2022	23	73960550	Missense_Mutation	SNP	C	TCGA-BW-A5NQ-01A-11D-A27I-10		73960550	81310010	102	2568											
RAP2C	57826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131348421	131348421	+	Silent	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RAP2C	NM_021183	exon3	c.C327G	p.V109V	TAGTGGGACTTTT	.	71	33	104	0	.	848	C	131348421	G	C	131348421	2	2	22	1	0	0	0	0	0	0	0	1	13042	1161	41	4		4	RAP2C	23	131348421	Silent	SNP	G	TCGA-BW-A5NQ-01A-11D-A27I-10	57387871	131348421	23922139	103	2569											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27087894	27087898	+	Frame_Shift_Del	DEL	GCCAC	GCCAC	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	GCCAC	GCCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARID1A	NM_006015	exon6	c.2181_2185del	p.727_729del	ACCTCGGCCACCC	.	202	70	325	0	.	584	-	27087898	GCCAC	-	27087894	7	5	23	1	0	1	0	1	0	0	0	0	913	1190	42	0	2203	0	ARID1A	1	27087894	Frame_Shift_Del	DEL	GCCAC	TCGA-CC-5258-01A-01D-A12Z-10		27087894	222162727	1	2570											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207068	32207068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BAI2	NM_001703	exon11	c.G1700T	p.R567L	CAGCGGCGGCTGG	.	132	70	61	0	.	526	A	32207068	C	A	32207068	3	1	23	1	0	0	0	0	1	0	0	0	1299	768	27	1	3149	1	BAI2	1	32207068	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	5119174	32207068	217043553	2	2571											
ARTN	9048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	44402421	44402421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARTN	NM_001136215	exon4	c.G671T	p.C224F	CCGCCTGCGGCTG	.	59	28	21	0	.	90	T	44402421	G	T	44402421	3	4	23	1	0	0	0	0	1	0	0	0	1001	1319	46	3	768	3	ARTN	1	44402421	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	12195353	44402421	204848200	3	2572											
ZFYVE9	9372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52705203	52705203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFYVE9	NM_007323	exon4	c.G2114T	p.C705F	CAAATTGCATGAA	.	87	15	135	2	.	230	T	52705203	G	T	52705203	3	4	23	1	0	0	0	0	1	0	0	0	17668	1319	46	3	2120	3	ZFYVE9	1	52705203	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	8302782	52705203	196545418	4	2573											
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115220086	115220086	+	Missense_Mutation	SNP	C	C	A	rs121912682	bycluster;by1000genomes;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AMPD1	NM_000036	exon10	c.G1373T	p.R458L	GACAGGCGGGGCT	.	143	21	96	0	G|0.999;A|0.001	293	A	115220086	C	A	115220086	3	1	23	1	0	0	0	0	1	0	0	0	585	768	27	1	997	1	AMPD1	1	115220086	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	62514883	115220086	134030535	5	2574											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117122413	117122413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF3	NM_001542	exon11	c.C2995T	p.R999C	TGGAGCGGGACAC	.	121	56	71	0	.	92	A	117122413	G	A	117122413	3	1	23	1	0	0	0	0	1	0	0	0	7601	1116	39	1	657	1	IGSF3	1	117122413	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	1902327	117122413	132128208	6	2575											
OTUD7B	56957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149916120	149916120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OTUD7B	NM_020205	exon12	c.G2168T	p.G723V	GGTAGGCCCCCGA	.	51	22	43	0	.	502	A	149916120	C	A	149916120	3	1	23	1	0	0	0	0	1	0	0	0	11319	739	26	3	367	3	OTUD7B	1	149916120	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	32793707	149916120	99334501	7	2576											
OR10J5	127385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159505721	159505721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR10J5	NM_001004469	exon1	c.C77A	p.T26N	AAGAGGGTTATCT	.	152	31	118	0	.	71	T	159505721	G	T	159505721	3	4	23	1	0	0	0	0	1	0	0	0	10912	1261	44	3	854	3	OR10J5	1	159505721	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	9589601	159505721	89744900	8	2577											
RFWD2	64326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175956209	175956209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RFWD2	NM_022457	exon18	c.A2003G	p.Y668C	CCTTTATAGTACA	.	202	45	179	0	.	659	C	175956209	T	C	175956209	3	2	23	1	0	0	0	0	1	0	0	0	13260	1406	49	2	204	2	RFWD2	1	175956209	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	16450488	175956209	73294412	9	2578											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	179623394	179623394	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TDRD5	NM_001199085	exon14	c.T2219G	p.L740X	AGCCATTAAAGGA	.	264	24	283	0	.	94	G	179623394	T	G	179623394	4	3	23	1	0	0	0	0	0	1	0	0	15730	1769	61	5		5	TDRD5	1	179623394	Nonsense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	3667185	179623394	69627227	10	2579											
KIF14	9928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200522769	200522769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF14	NM_014875	exon30	c.A4694G	p.H1565R	ACAATGTGAGTTA	.	316	36	352	2	.	140	C	200522769	T	C	200522769	3	2	23	1	0	0	0	0	1	0	0	0	8276	1696	59	2	256	2	KIF14	1	200522769	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	20899375	200522769	48727852	11	2580											
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222705320	222705320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HHIPL2	NM_024746	exon6	c.G1711C	p.E571Q	CATCTTCAGCAAA	.	62	25	91	0	.	69	G	222705320	C	G	222705320	3	3	23	1	0	0	0	0	1	0	0	0	7094	835	29	4	479	4	HHIPL2	1	222705320	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	22182551	222705320	26545301	12	2581											
RBM34	23029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235318339	235318339	+	Missense_Mutation	SNP	C	C	A	rs200657743	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RBM34	NM_001161533	exon4	c.G454T	p.V152L	CTGCTACTTTAAC	.	694	308	662	1	.	46	A	235318339	C	A	235318339	3	1	23	1	0	0	0	0	1	0	0	0	13131	565	20	3	891	3	RBM34	1	235318339	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	12613019	235318339	13932282	13	2582											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245772747	245772747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF26B	NM_018012	exon8	c.C1831G	p.L611V	GACCTGCTGTCGG	.	132	23	55	0	.	25	G	245772747	C	G	245772747	3	3	23	1	0	0	0	0	1	0	0	0	8295	796	28	4	1861	4	KIF26B	1	245772747	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	10454408	245772747	3477874	14	2583											
APOB	338	ucsc.edu;bcgsc.ca	37	2	21255391	21255391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	APOB	NM_000384	exon10	c.A1187G	p.Q396R	AGCCACTGGAGGA	.	51	5	50	0	.	175	C	21255391	T	C	21255391	3	2	23	1	0	0	0	0	1	0	0	0	785	1580	55	2	12584	2	APOB	2	21255391	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10		21255391	221943982	15	2584											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55582881	55582881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC88A	NM_018084	exon8	c.A634G	p.I212V	GTTCTATGATAGT	.	78	30	75	0	.	94	C	55582881	T	C	55582881	3	2	23	1	0	0	0	0	1	0	0	0	2863	1464	51	2	5081	2	CCDC88A	2	55582881	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	34327490	55582881	187616492	16	2585											
CTNNA2	1496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80782831	80782831	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CTNNA2	NM_001164883	exon12	c.G1554C	p.L518F	CATCTTGGAGGAT	.	26	12	57	0	.	368	C	80782831	G	C	80782831	3	2	23	1	0	0	0	0	1	0	0	0	4013	1339	47	4	1388	4	CTNNA2	2	80782831	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	25199950	80782831	162416542	17	2586											
EIF2AK3	9451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88874198	88874198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EIF2AK3	NM_004836	exon13	c.C2803T	p.H935Y	CCCTGTGCATCAG	.	117	29	170	1	.	361	A	88874198	G	A	88874198	3	1	23	1	0	0	0	0	1	0	0	0	4998	1319	46	3	567	3	EIF2AK3	2	88874198	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	8091367	88874198	154325175	18	2587											
SLC5A7	60482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108622601	108622601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC5A7	NM_021815	exon7	c.G838A	p.G280R	GCTTTCGGGTGCC	.	156	59	101	0	.	93	A	108622601	G	A	108622601	3	1	23	1	0	0	0	0	1	0	0	0	14670	1116	39	1	860	1	SLC5A7	2	108622601	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	19748403	108622601	134576772	19	2588											
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143718192	143718192	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KYNU	NM_001199241	exon9	c.583-1G>A	.	GATTTAGGGGGAA	.	49	12	74	0	.	92	A	143718192	G	A	143718192	5	1	23	1	0	0	0	0	0	0	1	0	8587	1014	35	3	608	3	KYNU	2	143718192	Splice_Site	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	35095591	143718192	99481181	20	2589											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166211045	166211045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SCN2A	NM_001040143	exon16	c.A3263G	p.D1088G	TCGTGGATGAAAG	.	305	95	309	0	.	142	G	166211045	A	G	166211045	3	3	23	1	0	0	0	0	1	0	0	0	13916	333	12	2	3421	2	SCN2A	2	166211045	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	22492853	166211045	76988328	21	2590											
TTC30A	92104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178483360	178483360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTC30A	NM_152275	exon1	c.G70C	p.D24H	GGGCATCGCGGAT	.	54	9	30	0	.	90	G	178483360	C	G	178483360	3	3	23	1	0	0	0	0	1	0	0	0	16695	884	31	4	1931	4	TTC30A	2	178483360	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	12272315	178483360	64716013	22	2591											
PER2	8864	bcgsc.ca;mdanderson.org	37	2	239167286	239167286	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PER2	NM_022817	exon16	c.1628-1G>A	.	GCATTTCTGAAGG	.	121	43	86	1	.	154	T	239167286	C	T	239167286	5	4	23	1	0	0	0	0	0	0	1	0	11730	927	32	3	2176	3	PER2	2	239167286	Splice_Site	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	60683926	239167286	4032087	23	2592											
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	1371531	1371532	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	p.D426I	GGTGGGGATATTG	.	177	63	518	1	.	.	AT	1371532	GA	AT	1371531	3	1	23	1	0	0	0	0	1	0	0	0	3645	1174	41	3	1314	3	CNTN6	3	1371531	Missense_Mutation	DNP	GA	TCGA-CC-5258-01A-01D-A12Z-10		1371531	196650899	24	2593											
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	33840383	33840383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDCD6IP	NM_013374	exon1	c.G163A	p.G55S	GCAGTCGGTCGTC	.	41	26	14	0	.	228	A	33840383	G	A	33840383	3	1	23	1	0	0	0	0	1	0	0	0	11624	1116	39	1	165	1	PDCD6IP	3	33840383	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	32468852	33840383	164182047	25	2594											
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52255499	52255499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TLR9	NM_017442	exon2	c.G2833A	p.G945S	AGAGACCACTGAC	.	54	15	20	0	.	587	T	52255499	C	T	52255499	3	4	23	1	0	0	0	0	1	0	0	0	15955	594	21	3	269	3	TLR9	3	52255499	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	18415116	52255499	145766931	26	2595											
ALG1L2	644974	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129811029	129811029	+	Silent	SNP	C	C	A	rs191831656	by1000genomes;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001136152	exon3	c.C217A	p.R73R	CACGAGCGGCCAG	.	314	103	143	1	C|0.997;T|0.003	.	A	129811029	C	A	129811029	2	1	23	1	0	0	0	0	0	0	0	1	518	759	27	1		1	ALG1L2	3	129811029	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	77555530	129811029	68211401	27	2596											
NPHP3	27031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132407637	132407637	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NPHP3	NM_153240	exon21	c.A2982G	p.V994V	CACGTATACACTT	.	376	66	337	1	.	91	C	132407637	T	C	132407637	2	2	23	1	0	0	0	0	0	0	0	1	10580	1393	49	2		2	NPHP3	3	132407637	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	2596608	132407637	65614793	28	2597											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	173996955	173996955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NLGN1	NM_014932	exon6	c.1164delC	p.N388fs	AGTGAACCAAGGG	.	133	38	233	0	.	231	-	173996955	C	-	173996955	7	5	23	1	0	1	0	1	0	0	0	0	10461	506	18	0	1178	0	NLGN1	3	173996955	Frame_Shift_Del	DEL	C	TCGA-CC-5258-01A-01D-A12Z-10	41589318	173996955	24025475	29	2598											
FGFRL1	53834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1015991	1015991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FGFRL1	NM_001004356	exon3	c.G80T	p.G27V	CCGCAGGCCCCCC	.	78	20	39	0	.	90	T	1015991	G	T	1015991	3	4	23	1	0	0	0	0	1	0	0	0	5869	1217	42	3	86	3	FGFRL1	4	1015991	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10		1015991	190138285	30	2599											
LPHN3	23284	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	62849309	62849309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LPHN3	NM_015236	exon16	c.G3020T	p.G1007V	GTTATGGAACAGA	.	192	100	260	0	.	508	T	62849309	G	T	62849309	3	4	23	1	0	0	0	0	1	0	0	0	8917	1174	41	3	3082	3	LPHN3	4	62849309	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	61833318	62849309	128304967	31	2600											
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70455333	70455333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UGT2A1	NM_001252274	exon7	c.C1839A	p.H613Q	ATCATGGTGAATT	.	289	139	328	1	.	92	T	70455333	G	T	70455333	3	4	23	1	0	0	0	0	1	0	0	0	16950	1252	44	3	246	3	UGT2A1	4	70455333	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	7606024	70455333	120698943	32	2601											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128806961	128806961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLK4	NM_014264	exon5	c.C436T	p.R146C	CTGACTCGTAATA	.	327	114	223	0	.	333	T	128806961	C	T	128806961	3	4	23	1	0	0	0	0	1	0	0	0	12098	884	31	1	454	1	PLK4	4	128806961	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	58351628	128806961	62347315	33	2602											
INPP4B	8821	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	143043286	143043286	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	INPP4B	NM_003866	exon22	c.A2130G	p.G710G	CCGTCTTCCTGTT	.	76	19	178	2	.	228	C	143043286	T	C	143043286	2	2	23	1	0	0	0	0	0	0	0	1	7753	1770	62	2		2	INPP4B	4	143043286	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	14236325	143043286	48110990	34	2603											
GAB1	2549	broad.mit.edu;mdanderson.org	37	4	144336701	144336701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GAB1	NM_207123	exon2	c.C144A	p.Y48X	ATATTACAAAAAT	.	292	22	240	1	.	1146	A	144336701	C	A	144336701	4	1	23	1	0	0	0	0	0	1	0	0	6148	489	17	3	150	3	GAB1	4	144336701	Nonsense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	1293415	144336701	46817575	35	2604											
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38370498	38370498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EGFLAM	NM_001205301	exon6	c.G646T	p.V216L	TTTGCCGTGAGGG	.	34	15	62	1	.	187	T	38370498	G	T	38370498	3	4	23	1	0	0	0	0	1	0	0	0	4966	1145	40	1	668	1	EGFLAM	5	38370498	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10		38370498	142544762	36	2605											
C6	729	ucsc.edu;bcgsc.ca	37	5	41158869	41158869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C6	NM_001115131	exon13	c.T1875G	p.N625K	GTCATCATTGATA	.	40	4	135	1	.	95	C	41158869	A	C	41158869	3	2	23	1	0	0	0	0	1	0	0	0	2315	214	8	5	953	5	C6	5	41158869	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	2788371	41158869	139756391	37	2606											
PDE4D	5144	ucsc.edu;bcgsc.ca	37	5	58511778	58511778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE4D	NM_001104631	exon2	c.G472A	p.G158S	ATGTGCCATTGTC	.	31	4	58	0	.	226	T	58511778	C	T	58511778	3	4	23	1	0	0	0	0	1	0	0	0	11642	594	21	3	2013	3	PDE4D	5	58511778	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	17352909	58511778	122403482	38	2607											
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	58882174	58882174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE4D	NM_006203	exon1	c.A28G	p.R10G	GCCTTCTAAAGGG	.	166	78	221	0	.	226	C	58882174	T	C	58882174	3	2	23	1	0	0	0	0	1	0	0	0	11642	1530	53	2	2053	2	PDE4D	5	58882174	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	370396	58882174	122033086	39	2608											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89953983	89953983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR98	NM_032119	exon21	c.C4640T	p.S1547F	TAGTTTCTGTATA	.	223	30	214	0	.	103	T	89953983	C	T	89953983	3	4	23	1	0	0	0	0	1	0	0	0	6721	913	32	3	4722	3	GPR98	5	89953983	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	31071809	89953983	90961277	40	2609											
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95091309	95091309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RHOBTB3	NM_014899	exon6	c.A892G	p.I298V	TCCAGTATCATCC	.	167	28	271	0	.	228	G	95091309	A	G	95091309	3	3	23	1	0	0	0	0	1	0	0	0	13335	449	16	2	914	2	RHOBTB3	5	95091309	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	5137326	95091309	85823951	41	2610											
FBN2	2201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127610344	127610344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBN2	NM_001999	exon60	c.C7626A	p.N2542K	CTGGCAGTTATGC	.	64	14	111	2	.	146	T	127610344	G	T	127610344	3	4	23	1	0	0	0	0	1	0	0	0	5703	1020	36	3	1136	3	FBN2	5	127610344	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	32519035	127610344	53304916	42	2611											
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134246024	134246024	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PCBD2	NM_032151	exon2	c.85-1G>C	.	TTCATAGTCATCA	.	125	23	103	0	.	90	C	134246024	G	C	134246024	5	2	23	1	0	0	0	0	0	0	1	0	11499	1043	36	4	90	4	PCBD2	5	134246024	Splice_Site	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	6635680	134246024	46669236	43	2612											
PDGFRB	5159	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149503839	149503839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDGFRB	NM_002609	exon14	c.A1997G	p.N666S	AACAGGTTGACCA	.	235	10	118	1	.	1499	C	149503839	T	C	149503839	3	2	23	1	0	0	0	0	1	0	0	0	11662	1725	60	2	1363	2	PDGFRB	5	149503839	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	15257815	149503839	31411421	44	2613											
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535204	169535204	+	Missense_Mutation	SNP	C	C	A	rs35678180	byfrequency;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXI1	NM_012188	exon2	c.C726A	p.S242R	GGACAGCCCCAAG	.	113	25	57	0	C|0.995;T|0.005	229	A	169535204	C	A	169535204	3	1	23	1	0	0	0	0	1	0	0	0	6009	738	26	3	732	3	FOXI1	5	169535204	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	20031365	169535204	11380056	45	2614											
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176895871	176895871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DBN1	NM_080881	exon3	c.A122T	p.D41V	AGGTCATCGGAGC	.	176	23	101	0	.	587	A	176895871	T	A	176895871	3	1	23	1	0	0	0	0	1	0	0	0	4252	1435	50	4	1885	4	DBN1	5	176895871	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	7360667	176895871	4019389	46	2615											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15507624	15507624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	JARID2	NM_004973	exon11	c.T2708A	p.L903Q	CCATCCTGCGTCA	.	155	47	71	0	.	228	A	15507624	T	A	15507624	3	1	23	1	0	0	0	0	1	0	0	0	7945	1580	55	4	2750	4	JARID2	6	15507624	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10		15507624	155607443	47	2616											
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29395051	29395051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR11A1	NM_013937	exon1	c.G368A	p.R123H	AGGTAGCGGTCAT	.	94	34	77	0	.	23	T	29395051	C	T	29395051	3	4	23	1	0	0	0	0	1	0	0	0	10924	768	27	1	583	1	OR11A1	6	29395051	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	13887427	29395051	141720016	48	2617											
CYP39A1	51302	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607325	46607325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CYP39A1	NM_016593	exon3	c.C394T	p.L132F	GATGGAGATTGAC	.	350	64	396	2	.	91	A	46607325	G	A	46607325	3	1	23	1	0	0	0	0	1	0	0	0	4177	942	33	3	1055	3	CYP39A1	6	46607325	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	17212274	46607325	124507742	49	2618											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51732778	51732778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1	NM_170724	exon48	c.T7616C	p.I2539T	GCAAGAATGTGAC	.	126	39	155	0	.	603	G	51732778	A	G	51732778	3	3	23	1	0	0	0	0	1	0	0	0	11971	101	4	2	4727	2	PKHD1	6	51732778	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	5125453	51732778	119382289	50	2619											
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55263983	55263983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GFRAL	NM_207410	exon7	c.C958A	p.P320T	GATTATCCAACCC	.	489	149	648	1	.	154	A	55263983	C	A	55263983	3	1	23	1	0	0	0	0	1	0	0	0	6351	855	30	3	984	3	GFRAL	6	55263983	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	3531205	55263983	115851084	51	2620											
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70993489	70993489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL9A1	NM_001851	exon6	c.C731A	p.P244H	CGCAGGGGGTCAC	.	236	64	140	1	.	94	T	70993489	G	T	70993489	3	4	23	1	0	0	0	0	1	0	0	0	3707	1232	43	3	2242	3	COL9A1	6	70993489	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	15729506	70993489	100121578	52	2621											
GABRR2	2570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89967516	89967516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GABRR2	NM_002043	exon9	c.G1271T	p.G424V	AGAAGCCCCTTCT	.	244	87	240	2	.	68	A	89967516	C	A	89967516	3	1	23	1	0	0	0	0	1	0	0	0	6177	623	22	3	130	3	GABRR2	6	89967516	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	18974027	89967516	81147551	53	2622											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111678241	111678241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	REV3L	NM_002912	exon18	c.A7160T	p.H2387L	ATTTCATGAAAAA	.	182	52	260	0	.	294	A	111678241	T	A	111678241	3	1	23	1	0	0	0	0	1	0	0	0	13240	1464	51	4	2292	4	REV3L	6	111678241	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	21710725	111678241	59436826	54	2623											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144758707	144758707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UTRN	NM_007124	exon10	c.A1066G	p.M356V	GCTTTTATGATGG	.	56	22	64	0	.	95	G	144758707	A	G	144758707	3	3	23	1	0	0	0	0	1	0	0	0	17100	449	16	2	1104	2	UTRN	6	144758707	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	33080466	144758707	26356360	55	2624											
MEOX2	4223	broad.mit.edu;bcgsc.ca	37	7	15725858	15725858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MEOX2	NM_005924	exon1	c.A170G	p.E57G	ATGCCCTCTTCGT	.	153	9	64	0	.	515	C	15725858	T	C	15725858	3	2	23	1	0	0	0	0	1	0	0	0	9474	1551	54	2	756	2	MEOX2	7	15725858	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10		15725858	143412805	56	2625											
SNX10	29887	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	26412162	26412162	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SNX10	NM_001199835	exon7	c.T576A	p.C192X	TGGATGTAAAGTA	.	377	114	321	1	.	226	A	26412162	T	A	26412162	4	1	23	1	0	0	0	0	0	1	0	0	14881	1644	57	4	598	4	SNX10	7	26412162	Nonsense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	10686304	26412162	132726501	57	2626											
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39504010	39504010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POU6F2	NM_007252	exon11	c.G1801T	p.G601W	TTTATCGGGAGTG	.	81	12	81	2	.	90	T	39504010	G	T	39504010	3	4	23	1	0	0	0	0	1	0	0	0	12285	1116	39	1	1839	1	POU6F2	7	39504010	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	13091848	39504010	119634653	58	2627											
TYW1	55253	broad.mit.edu;bcgsc.ca	37	7	66582604	66582604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TYW1	NM_018264	exon13	c.A1697G	p.K566R	CAGTCAAGGTAAG	.	75	6	132	0	.	91	G	66582604	A	G	66582604	3	3	23	1	0	0	0	0	1	0	0	0	16815	86	3	2	1747	2	TYW1	7	66582604	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	27078594	66582604	92556059	59	2628											
GNAI1	2770	broad.mit.edu;mdanderson.org	37	7	79764496	79764496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GNAI1	NM_002069	exon1	c.C20T	p.A7V	TGAGCGCCGAGGA	.	68	13	35	1	.	653	T	79764496	C	T	79764496	3	4	23	1	0	0	0	0	1	0	0	0	6504	739	26	3	22	3	GNAI1	7	79764496	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	13181892	79764496	79374167	60	2629											
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119914945	119914945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCND2	NM_012281	exon1	c.C259A	p.R87S	TTTGACCGTGACC	.	144	65	82	0	.	517	A	119914945	C	A	119914945	3	1	23	1	0	0	0	0	1	0	0	0	8019	652	23	1	261	1	KCND2	7	119914945	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	40150449	119914945	39223718	61	2630											
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123270025	123270025	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASB15	NM_080928	exon9	c.T1446C	p.C482C	GTTCTGTGAGTTT	.	133	52	143	0	.	228	C	123270025	T	C	123270025	2	2	23	1	0	0	0	0	0	0	0	1	1019	1702	59	2		2	ASB15	7	123270025	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	3355080	123270025	35868638	62	2631											
IMPDH1	3614	ucsc.edu;bcgsc.ca	37	7	128041169	128041169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IMPDH1	NM_000883	exon6	c.A404G	p.D135G	GTCAGGTCCTGAG	.	70	6	46	0	.	230	C	128041169	T	C	128041169	3	2	23	1	0	0	0	0	1	0	0	0	7726	1681	58	2	1443	2	IMPDH1	7	128041169	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	4771144	128041169	31097494	63	2632											
GIMAP2	26157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150390064	150390064	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GIMAP2	NM_015660	exon3	c.G690T	p.V230V	ACCTGTGGGATCA	.	134	29	153	1	.	91	T	150390064	G	T	150390064	2	4	23	1	0	0	0	0	0	0	0	1	6380	1335	47	3		3	GIMAP2	7	150390064	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	22348895	150390064	8748599	64	2633											
TTPA	7274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	63973866	63973866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTPA	NM_000370	exon5	c.A782G	p.N261S	ATAAAATTTGTCC	.	357	69	185	0	.	90	C	63973866	T	C	63973866	3	2	23	1	0	0	0	0	1	0	0	0	16733	1493	52	2	58	2	TTPA	8	63973866	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10		63973866	82390156	65	2634											
TRPA1	8989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72948615	72948615	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRPA1	NM_007332	exon21	c.C2463A	p.P821P	AAACAAGGGCAGC	.	316	49	294	2	.	230	T	72948615	G	T	72948615	2	4	23	1	0	0	0	0	0	0	0	1	16574	987	35	3		3	TRPA1	8	72948615	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	8974749	72948615	73415407	66	2635											
ATP6V0D2	245972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87162487	87162487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP6V0D2	NM_152565	exon6	c.C786A	p.D262E	CTTTGACCAGATG	.	102	86	107	2	.	90	A	87162487	C	A	87162487	3	1	23	1	0	0	0	0	1	0	0	0	1174	506	18	3	808	3	ATP6V0D2	8	87162487	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	14213872	87162487	59201535	67	2636											
PKHD1L1	93035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	110457487	110457487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon38	c.A5389C	p.N1797H	GAAAACAACATCA	.	453	28	217	1	.	145	C	110457487	A	C	110457487	3	2	23	1	0	0	0	0	1	0	0	0	11972	130	5	5	5539	5	PKHD1L1	8	110457487	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	23295000	110457487	35906535	68	2637											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110460575	110460575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon39	c.G5980C	p.V1994L	ACAGTTGTATTTG	.	232	13	103	0	.	145	C	110460575	G	C	110460575	3	2	23	1	0	0	0	0	1	0	0	0	11972	1377	48	4	6134	4	PKHD1L1	8	110460575	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	3088	110460575	35903447	69	2638											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	113662479	113662479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CSMD3	NM_198123	exon19	c.G3104T	p.S1035I	TCACAACTAAATG	.	567	50	287	0	.	1132	A	113662479	C	A	113662479	3	1	23	1	0	0	0	0	1	0	0	0	3946	565	20	3	8231	3	CSMD3	8	113662479	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	3201904	113662479	32701543	70	2639											
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	131164981	131164981	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASAP1	NM_001247996	exon15	c.1059+1G>A	.	TACTTACTGTGGC	.	364	61	175	0	.	95	T	131164981	C	T	131164981	5	4	23	1	0	0	0	0	0	0	1	0	1010	579	20	3	2380	3	ASAP1	8	131164981	Splice_Site	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	17502502	131164981	15199041	71	2640											
DDX58	23586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32457157	32457157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDX58	NM_014314	exon18	c.A2741G	p.E914G	ATCTTCTCAAAAT	.	113	39	234	2	.	230	C	32457157	T	C	32457157	3	2	23	1	0	0	0	0	1	0	0	0	4375	1551	54	2	40	2	DDX58	9	32457157	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10		32457157	108756274	72	2641			1	3		2	2	16	N	TTCCACT_T	7.364855e-05
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32457172	32457178	+	Frame_Shift_Del	DEL	TTCCACT	TTCCACT	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	TTCCACT	TTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDX58	NM_014314	exon18	c.2720_2726del	p.907_909del	AAGTCCTTCCACT	.	107	0	246	0	.	230	-	32457178	TTCCACT	-	32457172	7	5	23	1	0	1	0	1	0	0	0	0	4375	1609	56	0	55	0	DDX58	9	32457172	Frame_Shift_Del	DEL	TTCCACT	TCGA-CC-5258-01A-01D-A12Z-10	15	32457172	108756259	73	2642			1	3		2	2	16	N	TTCCACT_T	7.364855e-05
CDK5RAP2	55755	ucsc.edu;bcgsc.ca	37	9	123202153	123202153	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDK5RAP2	NM_018249	exon24	c.G3246A	p.L1082L	GGAACTCAGGTAA	.	36	4	121	0	.	229	T	123202153	C	T	123202153	2	4	23	1	0	0	0	0	0	0	0	1	3146	813	29	3		3	CDK5RAP2	9	123202153	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	90744981	123202153	18011278	74	2643											
OLFML2A	169611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127563918	127563918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OLFML2A	NM_182487	exon5	c.C895A	p.Q299K	GGCAAGCAGGAGG	.	116	59	96	2	.	68	A	127563918	C	A	127563918	3	1	23	1	0	0	0	0	1	0	0	0	10857	711	25	3	913	3	OLFML2A	9	127563918	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	4361765	127563918	13649513	75	2644											
CERCAM	51148	broad.mit.edu;mdanderson.org	37	9	131183275	131183275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CERCAM	NM_016174	exon1	c.G119T	p.R40L	TGGCCCGCAATGC	.	14	10	12	0	.	69	T	131183275	G	T	131183275	3	4	23	1	0	0	0	0	1	0	0	0	3266	1087	38	1	121	1	CERCAM	9	131183275	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	3619357	131183275	10030156	76	2645											
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137320977	137320977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RXRA	NM_002957	exon7	c.T934G	p.S312A	ATCGCCTCCTTCT	.	259	131	161	2	.	188	G	137320977	T	G	137320977	3	3	23	1	0	0	0	0	1	0	0	0	13763	1551	54	5	960	5	RXRA	9	137320977	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	6137702	137320977	3892454	77	2646											
OLFM1	10439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138011770	138011770	+	Missense_Mutation	SNP	G	G	A	rs1130517	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OLFM1	NM_014279	exon6	c.G1150A	p.A384T	CGCAGCGCCGGGG	.	55	32	35	0	.	70	A	138011770	G	A	138011770	3	1	23	1	0	0	0	0	1	0	0	0	10852	1087	38	1	1182	1	OLFM1	9	138011770	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	690793	138011770	3201661	78	2647											
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46999457	46999457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRIN2	NM_014696	exon3	c.C577G	p.Q193E	GCGAGTCAGTTGT	.	59	7	33	0	.	90	G	46999457	C	G	46999457	3	3	23	1	0	0	0	0	1	0	0	0	6730	827	29	4	579	4	GPRIN2	10	46999457	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		46999457	88535290	79	2648											
GPRIN2	9721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47000008	47000008	+	Silent	SNP	G	G	T	rs111800394	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRIN2	NM_014696	exon3	c.G1128T	p.P376P	GGTGCCGTCCCCT	.	221	23	78	0	G|0.500;A|0.500	90	T	47000008	G	T	47000008	2	4	23	1	0	0	0	0	0	0	0	1	6730	1132	40	1		1	GPRIN2	10	47000008	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	551	47000008	88534739	80	2649											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91477208	91477209	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF20B	NM_016195	exon10	c.1080_1081del	p.360_361del	AATATTACAGATT	.	317	50	613	0	.	93	-	91477209	AC	-	91477208	7	5	23	1	0	1	0	1	0	0	0	0	8287	388	14	0	1114	0	KIF20B	10	91477208	Frame_Shift_Del	DEL	AC	TCGA-CC-5258-01A-01D-A12Z-10	44477200	91477208	44057539	81	2650											
DCLRE1A	9937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115609989	115609989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCLRE1A	NM_014881	exon2	c.A875G	p.D292G	CTGAAGTCATTTT	.	236	73	153	1	.	228	C	115609989	T	C	115609989	3	2	23	1	0	0	0	0	1	0	0	0	4294	1667	58	2	2279	2	DCLRE1A	10	115609989	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	24132781	115609989	19924758	82	2651											
PDZD8	118987	ucsc.edu;bcgsc.ca	37	10	119078452	119078452	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDZD8	NM_173791	exon3	c.A1029G	p.A343A	AACATTTGCCTCT	.	45	4	123	0	.	90	C	119078452	T	C	119078452	2	2	23	1	0	0	0	0	0	0	0	1	11705	1799	63	2		2	PDZD8	10	119078452	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	3468463	119078452	16456295	83	2652											
CHST15	51363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	125769678	125769678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CHST15	NM_001270764	exon8	c.G1673A	p.W558X	GTCTTCCACGCAA	.	94	34	37	0	.	91	T	125769678	C	T	125769678	4	4	23	1	0	0	0	0	0	1	0	0	3403	595	21	3	16	3	CHST15	10	125769678	Nonsense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	6691226	125769678	9765069	84	2653											
OR10A3	26496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7960259	7960259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR10A3	NM_001003745	exon1	c.C809G	p.T270S	TTCTTGGTTTCGG	.	210	72	335	0	.	69	C	7960259	G	C	7960259	3	2	23	1	0	0	0	0	1	0	0	0	10891	1261	44	4	138	4	OR10A3	11	7960259	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10		7960259	127046257	85	2654											
BTBD10	84280	broad.mit.edu;bcgsc.ca	37	11	13443366	13443366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BTBD10	NM_032320	exon3	c.A121G	p.K41E	CTCCTTTAGCAAT	.	120	5	132	0	.	90	C	13443366	T	C	13443366	3	2	23	1	0	0	0	0	1	0	0	0	1538	1763	61	2	1334	2	BTBD10	11	13443366	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	5483107	13443366	121563150	86	2655											
NAT10	55226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34137375	34137375	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NAT10	NM_024662	exon6	c.G501A	p.V167V	GGATGTGCATTCC	.	215	63	311	0	.	92	A	34137375	G	A	34137375	2	1	23	1	0	0	0	0	0	0	0	1	10174	1306	46	3		3	NAT10	11	34137375	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	20694009	34137375	100869141	87	2656											
C1QTNF4	114900	hgsc.bcm.edu;mdanderson.org	37	11	47611682	47611682	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C1QTNF4	NM_031909	exon2	c.C681T	p.G227G	GTAGGCGCCGGGC	.	42	13	14	0	.	90	A	47611682	G	A	47611682	2	1	23	1	0	0	0	0	0	0	0	1	1965	1074	38	1		1	C1QTNF4	11	47611682	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	13474307	47611682	87394834	88	2657											
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	55927260	55927260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR8K5	NM_001004058	exon1	c.C534A	p.Y178X	ATCACAGTAAAAA	.	107	28	141	0	.	72	T	55927260	G	T	55927260	4	4	23	1	0	0	0	0	0	1	0	0	11245	1024	36	3	392	3	OR8K5	11	55927260	Nonsense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	8315578	55927260	79079256	89	2658											
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64900941	64900941	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SYVN1	NM_172230	exon2	c.A132G	p.A44A	ACTCACTGCCATG	.	82	28	44	0	.	91	C	64900941	T	C	64900941	2	2	23	1	0	0	0	0	0	0	0	1	15484	1594	55	2		2	SYVN1	11	64900941	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	8973681	64900941	70105575	90	2659											
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70507758	70507758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SHANK2	NM_133266	exon1	c.G115T	p.V39L	GGACCACCGTCTT	.	304	86	152	1	.	94	A	70507758	C	A	70507758	3	1	23	1	0	0	0	0	1	0	0	0	14265	507	18	3	3714	3	SHANK2	11	70507758	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	5606817	70507758	64498758	91	2660											
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	115085443	115085443	+	Silent	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CADM1	NM_014333	exon7	c.G879C	p.L293L	CCCAGACAGTACG	.	171	25	389	0	.	92	G	115085443	C	G	115085443	2	3	23	1	0	0	0	0	0	0	0	1	2566	465	17	4		4	CADM1	11	115085443	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	44577685	115085443	19921073	92	2661											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133814256	133814256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF9B	NM_014987	exon3	c.G268T	p.A90S	GACTGGCCCGGCC	.	148	39	74	0	.	68	A	133814256	C	A	133814256	3	1	23	1	0	0	0	0	1	0	0	0	7606	739	26	3	3849	3	IGSF9B	11	133814256	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	18728813	133814256	1192260	93	2662											
VAMP1	6843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575091	6575091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VAMP1	NM_014231	exon3	c.G205C	p.A69P	CATCAGCTCGGTC	.	240	90	124	0	.	90	G	6575091	C	G	6575091	3	3	23	1	0	0	0	0	1	0	0	0	17109	797	28	4	192	4	VAMP1	12	6575091	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		6575091	127276804	94	2663											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12291266	12291266	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP6	NM_002336	exon16	c.A3600G	p.Q1200Q	GTATTCTTGAAGG	.	186	61	258	0	.	661	C	12291266	T	C	12291266	2	2	23	1	0	0	0	0	0	0	0	1	8962	1606	56	2		2	LRP6	12	12291266	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	5716175	12291266	121560629	95	2664											
IFLTD1	160492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25801457	25801457	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFLTD1	NM_001145727	exon1	c.T29A	p.I10N	ACACCGATGTCTC	.	228	78	255	0	.	92	T	25801457	A	T	25801457	3	4	23	1	0	0	0	0	1	0	0	0	7530	333	12	4	1324	4	IFLTD1	12	25801457	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	13510191	25801457	108050438	96	2665											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31562239	31562239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DENND5B	NM_144973	exon14	c.G2761A	p.A921T	CCACAGCATTGAG	.	116	41	155	0	.	24	T	31562239	C	T	31562239	3	4	23	1	0	0	0	0	1	0	0	0	4437	710	25	3	1095	3	DENND5B	12	31562239	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	5760782	31562239	102289656	97	2666											
OR6C65	403282	hgsc.bcm.edu;bcgsc.ca	37	12	55794609	55794610	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR6C65	NM_001005518	exon1	c.297_298insT	p.V99fs	CCAAGTATTTTTT	.	140	45	122	0	.	68	T	55794610	-	T	55794609	7	5	23	1	0	1	1	0	0	0	0	0	11195	436	16	0	299	0	OR6C65	12	55794609	Frame_Shift_Ins	INS	-	TCGA-CC-5258-01A-01D-A12Z-10	24232370	55794609	78057286	98	2667											
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57038650	57038650	+	Missense_Mutation	SNP	T	T	C	rs11542649	bycluster	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP5B	NM_001686	exon3	c.A400G	p.I134V	CAGGAATTTTGAT	.	562	161	381	0	T|1.000;|0.000	91	C	57038650	T	C	57038650	3	2	23	1	0	0	0	0	1	0	0	0	1148	1493	52	2	1221	2	ATP5B	12	57038650	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	1244041	57038650	76813245	99	2668											
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57571304	57571304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP1	NM_002332	exon26	c.G4291T	p.G1431C	GAGACCGGCTCTG	.	180	57	73	1	.	596	T	57571304	G	T	57571304	3	4	23	1	0	0	0	0	1	0	0	0	8951	1116	39	1	4393	1	LRP1	12	57571304	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	532654	57571304	76280591	100	2669											
PPM1H	57460	ucsc.edu;bcgsc.ca	37	12	63087751	63087751	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PPM1H	NM_020700	exon7	c.T1102C	p.L368L	ACTTCAAGTCCTC	.	54	6	69	0	.	637	G	63087751	A	G	63087751	2	3	23	1	0	0	0	0	0	0	0	1	12341	69	3	2		2	PPM1H	12	63087751	Silent	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	5516447	63087751	70764144	101	2670											
FGD6	55785	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95603522	95603522	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FGD6	NM_018351	exon2	c.C1538G	p.A513G	GAGGCAGCCTTTT	.	217	69	214	1	.	137	C	95603522	G	C	95603522	3	2	23	1	0	0	0	0	1	0	0	0	5837	971	34	4	2834	4	FGD6	12	95603522	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	32515771	95603522	38248373	102	2671											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120580635	120580635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GCN1L1	NM_006836	exon43	c.C5606T	p.S1869F	TTGTTGGACTGGG	.	199	63	140	0	.	94	A	120580635	G	A	120580635	3	1	23	1	0	0	0	0	1	0	0	0	6299	1174	41	3	2473	3	GCN1L1	12	120580635	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	24977113	120580635	13271260	103	2672											
DHX37	57647	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	125438447	125438447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DHX37	NM_032656	exon20	c.C2674T	p.R892W	GGCCCCGCAGGCG	.	76	8	20	0	.	227	A	125438447	G	A	125438447	3	1	23	1	0	0	0	0	1	0	0	0	4510	1086	38	1	831	1	DHX37	12	125438447	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	4857812	125438447	8413448	104	2673											
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130927134	130927134	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	RIMBP2,brain,glioma,+1	RIMBP2	NM_015347	exon8	c.C712A	p.R238R	CCAACCGCGACTC	.	428	151	217	0	.	142	T	130927134	G	T	130927134	2	4	23	1	0	0	0	0	0	0	0	1	13363	1086	38	1		1	RIMBP2	12	130927134	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	5488687	130927134	2924761	105	2674											
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28143356	28143356	+	Silent	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LNX2	NM_153371	exon3	c.T465G	p.T155T	TGCTTGAGTTCTA	.	136	68	290	0	.	228	C	28143356	A	C	28143356	2	2	23	1	0	0	0	0	0	0	0	1	8866	291	11	5		5	LNX2	13	28143356	Silent	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10		28143356	87026522	106	2675											
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38158220	38158220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POSTN	NM_006475	exon9	c.G1129A	p.A377T	TTCCAGCCAGCTC	.	86	18	100	0	.	516	T	38158220	C	T	38158220	3	4	23	1	0	0	0	0	1	0	0	0	12259	739	26	3	1441	3	POSTN	13	38158220	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	10014864	38158220	77011658	107	2676											
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49710511	49710511	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FNDC3A	NM_001079673	exon6	c.A534G	p.R178R	TGAACGATCTAGT	.	133	59	241	1	.	278	G	49710511	A	G	49710511	2	3	23	1	0	0	0	0	0	0	0	1	5969	320	12	2		2	FNDC3A	13	49710511	Silent	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	11552291	49710511	65459367	108	2677											
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	80911451	80911451	+	Silent	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPRY2	NM_005842	exon2	c.C390G	p.S130S	TTCAGAGGAGCTG	.	183	26	87	0	.	659	C	80911451	G	C	80911451	2	2	23	1	0	0	0	0	0	0	0	1	15105	987	35	4		4	SPRY2	13	80911451	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	31200940	80911451	34258427	109	2678											
FAM155A	728215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108518800	108518800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM155A	NM_001080396	exon1	c.A145C	p.T49P	GGACTGTGAAAAA	.	129	29	54	1	.	23	G	108518800	T	G	108518800	3	3	23	1	0	0	0	0	1	0	0	0	5465	1696	59	5	1243	5	FAM155A	13	108518800	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	27607349	108518800	6651078	110	2679											
OR4K14	122740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20483095	20483095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR4K14	NM_001004712	exon1	c.C258A	p.F86L	ACTAAGGAAATCC	.	116	29	102	0	.	115	T	20483095	G	T	20483095	3	4	23	1	0	0	0	0	1	0	0	0	11069	1165	41	3	677	3	OR4K14	14	20483095	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10		20483095	86866445	111	2680											
PARP2	10038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20820469	20820469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PARP2	NM_005484	exon7	c.A602G	p.Y201C	GAAAATATGATAT	.	99	27	72	0	.	661	G	20820469	A	G	20820469	3	3	23	1	0	0	0	0	1	0	0	0	11461	449	16	2	628	2	PARP2	14	20820469	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	337374	20820469	86529071	112	2681											
FOXG1	2290	broad.mit.edu;mdanderson.org	37	14	29237565	29237565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXG1	NM_005249	exon1	c.C1080A	p.N360K	CGCCAACGGCCTG	.	46	8	23	0	.	660	A	29237565	C	A	29237565	3	1	23	1	0	0	0	0	1	0	0	0	6007	535	19	1	1082	1	FOXG1	14	29237565	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	8417096	29237565	78111975	113	2682											
AKAP6	9472	ucsc.edu;bcgsc.ca	37	14	33014861	33014861	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AKAP6	NM_004274	exon4	c.A1002G	p.T334T	TCTGACAAATGCT	.	46	4	87	0	.	733	G	33014861	A	G	33014861	2	3	23	1	0	0	0	0	0	0	0	1	455	117	5	2		2	AKAP6	14	33014861	Silent	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	3777296	33014861	74334679	114	2683											
GPR135	64582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59930780	59930780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR135	NM_022571	exon1	c.A1165G	p.I389V	TGCGGATGGCGTA	.	73	11	40	0	.	90	C	59930780	T	C	59930780	3	2	23	1	0	0	0	0	1	0	0	0	6644	1464	51	2	323	2	GPR135	14	59930780	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	26915919	59930780	47418760	115	2684											
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	61997206	61997206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PRKCH	NM_006255	exon12	c.G1654T	p.A552S	GGTCACGCGCCTT	.	163	26	155	0	.	1063	T	61997206	G	T	61997206	3	4	23	1	0	0	0	0	1	0	0	0	12513	1087	38	1	1700	1	PRKCH	14	61997206	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	2066426	61997206	45352334	116	2685											
LTBP2	4053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74995708	74995708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LTBP2	NM_000428	exon11	c.G2105T	p.G702V	GCTTTGCCCACGC	.	190	80	97	1	.	92	A	74995708	C	A	74995708	3	1	23	1	0	0	0	0	1	0	0	0	9074	739	26	3	3464	3	LTBP2	14	74995708	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	12998502	74995708	32353832	117	2686											
ASB2	51676	broad.mit.edu;bcgsc.ca	37	14	94405769	94405769	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASB2	NM_001202429	exon8	c.C1302T	p.G434G	GTCGGCGCCGTGT	.	60	8	33	1	.	228	A	94405769	G	A	94405769	2	1	23	1	0	0	0	0	0	0	0	1	1023	1074	38	1		1	ASB2	14	94405769	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	19410061	94405769	12943771	118	2687											
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43571883	43571883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TGM7	NM_052955	exon10	c.G1618A	p.G540S	TACCACCCCCATG	.	69	21	32	0	.	92	T	43571883	C	T	43571883	3	4	23	1	0	0	0	0	1	0	0	0	15832	623	22	3	530	3	TGM7	15	43571883	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		43571883	58959509	119	2688											
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52258056	52258056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LEO1	NM_138792	exon2	c.C704G	p.P235R	AGCTGTGGTTGTT	.	563	96	545	0	.	68	C	52258056	G	C	52258056	3	2	23	1	0	0	0	0	1	0	0	0	8726	1348	47	4	1340	4	LEO1	15	52258056	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	8686173	52258056	50273336	120	2689											
TTLL13	440307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90799374	90799374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTLL13	NM_001029964	exon6	c.T550A	p.Y184N	CATAGCTATGGGG	.	70	29	51	0	.	44	A	90799374	T	A	90799374	3	1	23	1	0	0	0	0	1	0	0	0	16723	1536	53	4	568	4	TTLL13	15	90799374	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	38541318	90799374	11732018	121	2690											
PIGQ	9091	broad.mit.edu;ucsc.edu	37	16	628459	628459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGQ	NM_148920	exon5	c.C1023G	p.D341E	ACTGGACCAGGTG	.	59	7	63	0	.	226	G	628459	C	G	628459	3	3	23	1	0	0	0	0	1	0	0	0	11896	506	18	4	1037	4	PIGQ	16	628459	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		628459	89726294	122	2691											
CREBBP	1387	ucsc.edu;bcgsc.ca	37	16	3820965	3820965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CREBBP	NM_004380	exon14	c.T2486C	p.L829P	TTAGGAAGAGCAG	.	48	5	48	1	.	1807	G	3820965	A	G	3820965	3	3	23	1	0	0	0	0	1	0	0	0	3861	72	3	2	4914	2	CREBBP	16	3820965	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	3192506	3820965	86533788	123	2692											
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	56920341	56920341	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC12A3	NM_001126108	exon16	c.1991delC	p.T664fs	TGGGCACCTTCAC	.	74	38	46	0	.	155	-	56920341	C	-	56920341	7	5	23	1	0	1	0	1	0	0	0	0	14384	507	18	0	2053	0	SLC12A3	16	56920341	Frame_Shift_Del	DEL	C	TCGA-CC-5258-01A-01D-A12Z-10	53099376	56920341	33434412	124	2693											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70884513	70884513	+	Silent	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HYDIN	NM_001270974	exon74	c.G12489C	p.V4163V	AAAGTTCACATCT	.	68	34	173	0	.	92	G	70884513	C	G	70884513	2	3	23	1	0	0	0	0	0	0	0	1	7467	813	29	4		4	HYDIN	16	70884513	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	13964172	70884513	19470240	125	2694											
CDH15	1013	ucsc.edu;bcgsc.ca	37	16	89253841	89253841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDH15	NM_004933	exon6	c.T668C	p.V223A	AGGTGGTCGCGGT	.	47	4	44	0	.	523	C	89253841	T	C	89253841	3	2	23	1	0	0	0	0	1	0	0	0	3100	1667	58	2	690	2	CDH15	16	89253841	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	18369328	89253841	1100912	126	2695											
ZNF276	92822	broad.mit.edu;bcgsc.ca	37	16	89804389	89804389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF276	NM_001113525	exon11	c.A1580G	p.E527G	GGTGTGAGGTCTG	.	98	6	79	0	.	90	G	89804389	A	G	89804389	3	3	23	1	0	0	0	0	1	0	0	0	17808	304	11	2	1622	2	ZNF276	16	89804389	Missense_Mutation	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	550548	89804389	550364	127	2696											
PELP1	27043	broad.mit.edu;bcgsc.ca	37	17	4594688	4594688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PELP1	NM_014389	exon2	c.G299T	p.S100I	ATGGAACTGAGAC	.	93	6	100	1	.	24	A	4594688	C	A	4594688	3	1	23	1	0	0	0	0	1	0	0	0	11725	565	20	3	3157	3	PELP1	17	4594688	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		4594688	76600522	128	2697											
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7216697	7216697	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPS2	NM_004489	exon9	c.724+2T>C	.	GTTATCACCTGTC	.	98	51	97	0	.	93	G	7216697	A	G	7216697	5	3	23	1	0	0	0	0	0	0	1	0	6733	173	6	2	273	2	GPS2	17	7216697	Splice_Site	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10	2622009	7216697	73978513	129	2698											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577150	7577150	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	TP53,colon,carcinoma,0	TP53	NM_000546	exon8	c.788delA	p.N263fs	AGTAGATTACCAC	.	70	33	66	0	.	70225	-	7577150	T	-	7577150	7	5	23	1	0	1	0	1	0	0	0	0	16378	1493	52	0	498	0	TP53	17	7577150	Frame_Shift_Del	DEL	T	TCGA-CC-5258-01A-01D-A12Z-10	360453	7577150	73618060	130	2699											
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu	37	17	7950032	7950032	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALOX15B	NM_001141	exon9	c.1247delC	p.A416fs	CACTCGCCCGGGA	.	65	11	55	0	.	227	-	7950032	C	-	7950032	7	5	23	1	0	1	0	1	0	0	0	0	539	739	26	0	1281	0	ALOX15B	17	7950032	Frame_Shift_Del	DEL	C	TCGA-CC-5258-01A-01D-A12Z-10	372882	7950032	73245178	131	2700											
DNAH9	1770	broad.mit.edu;mdanderson.org	37	17	11738188	11738188	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAH9	NM_001372	exon49	c.G9480A	p.A3160A	AGCAGCGCAGGCA	.	38	8	57	0	.	168	A	11738188	G	A	11738188	2	1	23	1	0	0	0	0	0	0	0	1	4608	1074	38	1		1	DNAH9	17	11738188	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	3788156	11738188	69457022	132	2701											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26967658	26967658	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIAA0100	NM_014680	exon8	c.C810T	p.F270F	GAGAAGGAATAGG	.	372	127	251	0	.	93	A	26967658	G	A	26967658	2	1	23	1	0	0	0	0	0	0	0	1	8154	1165	41	3		3	KIAA0100	17	26967658	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	15229470	26967658	54227552	133	2702											
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	34266279	34266279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LYZL6	NM_020426	exon1	c.G82A	p.A28T	CCTGGGCCAAGTC	.	59	28	84	0	.	90	T	34266279	C	T	34266279	3	4	23	1	0	0	0	0	1	0	0	0	9134	739	26	3	380	3	LYZL6	17	34266279	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	7298621	34266279	46928931	134	2703											
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35538246	35538246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ACACA	NM_198834	exon40	c.A4828G	p.I1610V	TATTGATTAACAT	.	224	112	345	0	.	154	C	35538246	T	C	35538246	3	2	23	1	0	0	0	0	1	0	0	0	106	1493	52	2	2391	2	ACACA	17	35538246	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	1271967	35538246	45656964	135	2704											
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu	37	17	58156056	58156056	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HEATR6	NM_022070	exon2	c.219+1G>A	.	CGCCTACCTCCGG	.	38	14	14	0	.	227	T	58156056	C	T	58156056	5	4	23	1	0	0	0	0	0	0	1	0	7033	521	18	3	3405	3	HEATR6	17	58156056	Splice_Site	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	22617810	58156056	23039154	136	2705											
SDK2	54549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71503642	71503642	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SDK2	NM_001144952	exon2	c.C159T	p.S53S	TGGCCAGCTGCCC	.	139	61	99	1	.	24	A	71503642	G	A	71503642	2	1	23	1	0	0	0	0	0	0	0	1	13969	962	34	3		3	SDK2	17	71503642	Silent	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	13347586	71503642	9691568	137	2706											
PTPRM	5797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8088802	8088802	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTPRM	NM_001105244	exon11	c.C1809T	p.T603T	CAATACCGTGACA	.	67	29	123	1	.	228	T	8088802	C	T	8088802	2	4	23	1	0	0	0	0	0	0	0	1	12806	639	23	1		1	PTPRM	18	8088802	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		8088802	69988446	138	2707											
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	46860102	46860102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DYM	NM_017653	exon7	c.C616T	p.P206S	ACCATGGACCTCG	.	80	12	80	0	.	226	A	46860102	G	A	46860102	3	1	23	1	0	0	0	0	1	0	0	0	4840	1174	41	3	1437	3	DYM	18	46860102	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10	38771300	46860102	31217146	139	2708											
FBN3	84467	ucsc.edu;bcgsc.ca	37	19	8175981	8175981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBN3	NM_032447	exon32	c.A4171G	p.M1391V	AGCCCATCTCACA	.	47	4	44	0	.	100	C	8175981	T	C	8175981	3	2	23	1	0	0	0	0	1	0	0	0	5704	1435	50	2	4386	2	FBN3	19	8175981	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10		8175981	50953002	140	2709											
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9084989	9084989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MUC16	NM_024690	exon1	c.A6826G	p.T2276A	AAATGGTTCTAAA	.	48	4	136	0	.	566	C	9084989	T	C	9084989	3	2	23	1	0	0	0	0	1	0	0	0	9973	1725	60	2	37033	2	MUC16	19	9084989	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	909008	9084989	50043994	141	2710											
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19740822	19740822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GMIP	NM_016573	exon21	c.G2863A	p.A955T	AGGTGGCCCTGGG	.	182	38	90	0	.	91	T	19740822	C	T	19740822	3	4	23	1	0	0	0	0	1	0	0	0	6491	739	26	3	53	3	GMIP	19	19740822	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	10655833	19740822	39388161	142	2711											
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22942280	22942281	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF99	NM_001080409	exon4	c.431_432insA	p.I144fs	TGAAATATTTTTC	.	158	51	320	0	.	24	T	22942281	-	T	22942280	7	5	23	1	0	1	1	0	0	0	0	0	18201	449	16	0	2634	0	ZNF99	19	22942280	Frame_Shift_Ins	INS	-	TCGA-CC-5258-01A-01D-A12Z-10	3201458	22942280	36186703	143	2712											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927076	23927076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_138286	exon4	c.A1276G	p.K426E	CACATTTTTCACA	.	134	47	161	0	.	.	C	23927076	T	C	23927076	3	2	23	1	0	0	0	0	1	0	0	0	18085	1850	64	2	665	2	ZNF681	19	23927076	Missense_Mutation	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	984796	23927076	35201907	144	2713											
TGFB1	7040	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	41850671	41850671	+	Silent	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TGFB1	NM_000660	exon3	c.G615T	p.R205R	CCACTGCCGCACA	.	71	19	57	0	.	522	A	41850671	C	A	41850671	2	1	23	1	0	0	0	0	0	0	0	1	15813	726	26	3		3	TGFB1	19	41850671	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	17923595	41850671	17278312	145	2714											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53747099	53747099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF677	NM_182609	exon4	c.G67C	p.E23Q	GGCACTCCCACTC	.	134	45	153	0	.	91	G	53747099	C	G	53747099	3	3	23	1	0	0	0	0	1	0	0	0	18081	864	30	4	1695	4	ZNF677	19	53747099	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	11896428	53747099	5381884	146	2715											
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54646892	54646892	+	Silent	SNP	C	C	T	rs149889819		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CNOT3	NM_014516	exon3	c.C63T	p.G21G	CGAGGGCGTGGAG	.	70	19	43	0	C|0.999;T|0.000	93	T	54646892	C	T	54646892	2	4	23	1	0	0	0	0	0	0	0	1	3620	755	27	1		1	CNOT3	19	54646892	Silent	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10	899793	54646892	4482091	147	2716											
PTGIS	5740	ucsc.edu;bcgsc.ca	37	20	48140754	48140754	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTGIS	NM_000961	exon6	c.T696C	p.S232S	TTTGACACTGCAC	.	49	4	37	0	.	93	G	48140754	A	G	48140754	2	3	23	1	0	0	0	0	0	0	0	1	12752	156	6	2		2	PTGIS	20	48140754	Silent	SNP	A	TCGA-CC-5258-01A-01D-A12Z-10		48140754	14884766	148	2717											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47850032	47850032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PCNT	NM_006031	exon36	c.C7799T	p.A2600V	TCCTGGCGGCGGA	.	315	55	166	0	.	141	T	47850032	C	T	47850032	3	4	23	1	0	0	0	0	1	0	0	0	11590	768	27	1	7941	1	PCNT	21	47850032	Missense_Mutation	SNP	C	TCGA-CC-5258-01A-01D-A12Z-10		47850032	279863	149	2718											
TRIOBP	11078	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	38119347	38119347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRIOBP	NM_001039141	exon7	c.G784A	p.A262T	TCTCCTGCCCAAA	.	122	30	62	0	.	136	A	38119347	G	A	38119347	3	1	23	1	0	0	0	0	1	0	0	0	16550	1319	46	3	802	3	TRIOBP	22	38119347	Missense_Mutation	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10		38119347	13185219	150	2719											
PAGE2	203569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	55117891	55117891	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PAGE2	NM_207339	exon4	c.319+1G>A	.	AAGCAGGTTTGTT	.	334	104	321	0	.	92	A	55117891	G	A	55117891	5	1	23	1	0	0	0	0	0	0	1	0	11390	1275	44	3	330	3	PAGE2	23	55117891	Splice_Site	SNP	G	TCGA-CC-5258-01A-01D-A12Z-10		55117891	100152669	151	2720											
NAP1L3	4675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	92927476	92927476	+	Silent	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NAP1L3	NM_004538	exon1	c.A828T	p.A276A	TCTTACTGCAGCC	.	231	166	133	0	.	131	A	92927476	T	A	92927476	2	1	23	1	0	0	0	0	0	0	0	1	10158	1567	55	4		4	NAP1L3	23	92927476	Silent	SNP	T	TCGA-CC-5258-01A-01D-A12Z-10	37809585	92927476	62343084	152	2721											
MED18	54797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28657195	28657195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MED18	NM_017638	exon2	c.A22G	p.M8V	GTCACCATGATGC	.	137	113	159	0	.	226	G	28657195	A	G	28657195	3	3	24	1	0	0	0	0	1	0	0	0	9436	217	8	2	24	2	MED18	1	28657195	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10		28657195	220593426	1	2722											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42048714	42048714	+	Silent	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HIVEP3	NM_024503	exon4	c.G1755C	p.R585R	CAGCATCCGGGGG	.	91	68	115	0	.	157	G	42048714	C	G	42048714	2	3	24	1	0	0	0	0	0	0	0	1	7188	842	30	4		4	HIVEP3	1	42048714	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	13391519	42048714	207201907	2	2723											
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75683603	75683603	+	Silent	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC44A5	NM_152697	exon18	c.A1572C	p.A524A	AATTAATGCAATA	.	102	71	126	0	.	95	G	75683603	T	G	75683603	2	3	24	1	0	0	0	0	0	0	0	1	14639	1451	51	5		5	SLC44A5	1	75683603	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	33634889	75683603	173567018	3	2724	20	2									
SLC44A5	204962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75683604	75683604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC44A5	NM_152697	exon18	c.C1571A	p.A524E	ATTAATGCAATAA	.	99	69	126	1	.	95	T	75683604	G	T	75683604	3	4	24	1	0	0	0	0	1	0	0	0	14639	1319	46	3	727	3	SLC44A5	1	75683604	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	1	75683604	173567017	4	2725	20	2									
PDE4DIP	9659	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	144923732	144923732	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PDE4DIP	NM_001002811	exon2	c.A1215T	p.A405A	GAGTTCTGCCAAG	.	448	125	410	0	.	663	A	144923732	T	A	144923732	2	1	24	1	0	0	0	0	0	0	0	1	11643	1567	55	4		4	PDE4DIP	1	144923732	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	69240128	144923732	104326889	5	2726											
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153318651	153318651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PGLYRP4	NM_020393	exon3	c.C66A	p.N22K	TGTTTTGTTCCAG	.	302	141	229	0	.	94	T	153318651	G	T	153318651	3	4	24	1	0	0	0	0	1	0	0	0	11796	1368	48	3	1083	3	PGLYRP4	1	153318651	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	8394919	153318651	95931970	6	2727											
EFNA4	1945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155039354	155039354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EFNA4	NM_182690	exon2	c.G262T	p.A88S	TGCCAGGCAGAGG	.	236	82	172	0	.	115	T	155039354	G	T	155039354	3	4	24	1	0	0	0	0	1	0	0	0	4953	1203	42	3	268	3	EFNA4	1	155039354	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	1720703	155039354	94211267	7	2728											
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804417	157804417	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CD5L	NM_005894	exon4	c.C498T	p.G166G	GCTCCAGCCTGTC	.	128	57	92	0	.	91	A	157804417	G	A	157804417	2	1	24	1	0	0	0	0	0	0	0	1	3027	958	34	3		3	CD5L	1	157804417	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	2765063	157804417	91446204	8	2729											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158590172	158590172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPTA1	NM_003126	exon44	c.C6205A	p.P2069T	GCACAGGCTCTGA	.	423	36	307	0	.	142	T	158590172	G	T	158590172	3	4	24	1	0	0	0	0	1	0	0	0	15115	1203	42	3	1090	3	SPTA1	1	158590172	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	785755	158590172	90660449	9	2730											
HSPA6	3310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161495008	161495008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HSPA6	NM_002155	exon1	c.T560A	p.L187Q	ATGGGCTGGACCG	.	314	120	267	0	.	226	A	161495008	T	A	161495008	3	1	24	1	0	0	0	0	1	0	0	0	7415	1580	55	4	562	4	HSPA6	1	161495008	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	2904836	161495008	87755613	10	2731											
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192128370	192128370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RGS18	NM_130782	exon2	c.G140C	p.R47T	GAAATAGACTAAG	.	141	15	81	0	.	229	C	192128370	G	C	192128370	3	2	24	1	0	0	0	0	1	0	0	0	13300	942	33	4	146	4	RGS18	1	192128370	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	30633362	192128370	57122251	11	2732											
TROVE2	6738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193046176	193046176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TROVE2	NM_004600	exon5	c.T1082G	p.F361C	AAACATTTAAGGT	.	154	64	90	0	.	115	G	193046176	T	G	193046176	3	3	24	1	0	0	0	0	1	0	0	0	16573	1841	64	5	1096	5	TROVE2	1	193046176	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	917806	193046176	56204445	12	2733											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216073535	216073535	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	USH2A	NM_206933	exon40	c.G7476A	p.S2492S	GCTTAACGATGCA	.	94	35	62	0	.	115	T	216073535	C	T	216073535	2	4	24	1	0	0	0	0	0	0	0	1	17033	523	19	1		1	USH2A	1	216073535	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	23027359	216073535	33177086	13	2734											
WDR64	128025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241946598	241946598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	WDR64	NM_144625	exon22	c.C2590T	p.R864C	TCCTGGCGTGCTC	.	139	14	98	0	.	91	T	241946598	C	T	241946598	3	4	24	1	0	0	0	0	1	0	0	0	17312	768	27	1	2676	1	WDR64	1	241946598	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	25873063	241946598	7304023	14	2735											
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242024779	242024779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EXO1	NM_130398	exon10	c.A1016G	p.D339G	AGATCGATGACTA	.	95	43	61	0	.	661	G	242024779	A	G	242024779	3	3	24	1	0	0	0	0	1	0	0	0	5300	333	12	2	1042	2	EXO1	1	242024779	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	78181	242024779	7225842	15	2736											
APOB	338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228347	21228347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	APOB	NM_000384	exon26	c.C11393G	p.T3798R	TATTTTGTTAACA	.	146	30	138	1	.	175	C	21228347	G	C	21228347	3	2	24	1	0	0	0	0	1	0	0	0	785	1377	48	4	2314	4	APOB	2	21228347	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		21228347	221971026	16	2737											
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36691797	36691797	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CRIM1	NM_016441	exon5	c.T990C	p.N330N	TGTTAATGGTACG	.	268	83	294	0	.	118	C	36691797	T	C	36691797	2	2	24	1	0	0	0	0	0	0	0	1	3873	1478	51	2		2	CRIM1	2	36691797	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	15463450	36691797	206507576	17	2738											
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101670763	101670763	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TBC1D8	NM_001102426	exon4	c.C393T	p.A131A	CTGCTCGGCGAGC	.	87	14	64	0	.	25	A	101670763	G	A	101670763	2	1	24	1	0	0	0	0	0	0	0	1	15622	1103	39	1		1	TBC1D8	2	101670763	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	64978966	101670763	141528610	18	2739											
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136872834	136872834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CXCR4	NM_001008540	exon1	c.A676T	p.I226F	AGATGATAATGCA	.	126	85	133	0	.	1082	A	136872834	T	A	136872834	3	1	24	1	0	0	0	0	1	0	0	0	4093	1406	49	4	398	4	CXCR4	2	136872834	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	35202071	136872834	106326539	19	2740											
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152418677	152418677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NEB	NM_001271208	exon121	c.T18943G	p.W6315G	TATCCCAAACGTA	.	90	7	81	0	.	145	C	152418677	A	C	152418677	3	2	24	1	0	0	0	0	1	0	0	0	10302	130	5	5	6991	5	NEB	2	152418677	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	15545843	152418677	90780696	20	2741											
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152502668	152502668	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NEB	NM_004543	exon55	c.A7512G	p.K2504K	GTTTGCTTTAGCC	.	136	6	106	0	.	145	C	152502668	T	C	152502668	2	2	24	1	0	0	0	0	0	0	0	1	10302	1606	56	2		2	NEB	2	152502668	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	83991	152502668	90696705	21	2742											
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	172700890	172700890	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC25A12	NM_003705	exon5	c.C454T	p.Q152X	GAAACTGCGTGAA	.	77	49	85	0	.	90	A	172700890	G	A	172700890	4	1	24	1	0	0	0	0	0	1	0	0	14474	1328	46	3	1638	3	SLC25A12	2	172700890	Nonsense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	20198222	172700890	70498483	22	2743											
PTH2R	5746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209345847	209345847	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PTH2R	NM_005048	exon10	c.1034delG	p.W345fs	AAATCTGGGAGAC	.	258	161	212	0	.	502	-	209345847	G	-	209345847	7	5	24	1	0	1	0	1	0	0	0	0	12760	1357	47	0	1072	0	PTH2R	2	209345847	Frame_Shift_Del	DEL	G	TCGA-CC-5259-01A-31D-A20W-10	36644957	209345847	33853526	23	2744											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	219225314	219225314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	C2orf62	NM_198559	exon5	c.G394T	p.E132X	CCCATGGAACGGA	.	53	34	39	0	.	68	T	219225314	G	T	219225314	4	4	24	1	0	0	0	0	0	1	0	0	2181	1175	41	3	412	3	C2orf62	2	219225314	Nonsense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	9879467	219225314	23974059	24	2745											
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219508734	219508734	+	Silent	SNP	G	G	T	rs185508464	byfrequency;alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF142	NM_001105537	exon8	c.C2505A	p.A835A	GCGGAAGGCTCGC	.	114	30	114	0	G|0.998;A|0.002	137	T	219508734	G	T	219508734	2	4	24	1	0	0	0	0	0	0	0	1	17728	987	35	3		3	ZNF142	2	219508734	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	283420	219508734	23690639	25	2746											
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222365784	222365784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EPHA4	NM_004438	exon4	c.G932A	p.R311Q	AAGCCTCGGTCAC	.	56	12	62	0	.	1441	T	222365784	C	T	222365784	3	4	24	1	0	0	0	0	1	0	0	0	5169	884	31	1	2084	1	EPHA4	2	222365784	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	2857050	222365784	20833589	26	2747											
TRIP12	9320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230672989	230672989	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRIP12	NM_004238	exon15	c.A2174T	p.Y725F	AGTTCATACAACT	.	30	5	43	0	.	572	A	230672989	T	A	230672989	3	1	24	1	0	0	0	0	1	0	0	0	16553	1406	49	4	3912	4	TRIP12	2	230672989	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	8307205	230672989	12526384	27	2748											
FBXO36	130888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230787284	230787284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBXO36	NM_174899	exon1	c.C55G	p.P19A	CCGCCGCCTAGCA	.	205	41	248	0	.	227	G	230787284	C	G	230787284	3	3	24	1	0	0	0	0	1	0	0	0	5745	739	26	4	57	4	FBXO36	2	230787284	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	114295	230787284	12412089	28	2749											
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231937074	231937074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PSMD1	NM_002807	exon7	c.G826T	p.A276S	CCTATTGCTTCTG	.	113	18	104	0	.	92	T	231937074	G	T	231937074	3	4	24	1	0	0	0	0	1	0	0	0	12692	1319	46	3	852	3	PSMD1	2	231937074	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	1149790	231937074	11262299	29	2750											
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14555217	14555217	+	RNA	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GRIP2	.	.	.	.	GCCAGTGCGGCGT	.	140	40	121	0	.	69	T	14555217	G	T	14555217	1	4	24	0	1	0	0	0	0	0	0	0	6788	1319	46	3		3	GRIP2	3	14555217	RNA	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		14555217	183467213	30	2751											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38888226	38888226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCN11A	NM_014139	exon26	c.T5335A	p.S1779T	AGCTAGACAAGTC	.	191	99	211	0	.	99	T	38888226	A	T	38888226	3	4	24	1	0	0	0	0	1	0	0	0	13913	275	10	4	44	4	SCN11A	3	38888226	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	24333009	38888226	159134204	31	2752											
ARIH2	10425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49006060	49006060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARIH2	NM_006321	exon7	c.G632C	p.R211T	AATACAGGCGCTA	.	145	19	177	0	.	91	C	49006060	G	C	49006060	3	2	24	1	0	0	0	0	1	0	0	0	924	1000	35	4	650	4	ARIH2	3	49006060	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	10117834	49006060	149016370	32	2753											
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111603106	111603106	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.263delC	p.T88fs	ATTTAACCCTCTC	.	111	66	102	0	.	96	-	111603106	C	-	111603106	7	5	24	1	0	1	0	1	0	0	0	0	11852	507	18	0	269	0	PHLDB2	3	111603106	Frame_Shift_Del	DEL	C	TCGA-CC-5259-01A-31D-A20W-10	62597046	111603106	86419324	33	2754	21	2									
PHLDB2	90102	hgsc.bcm.edu;bcgsc.ca	37	3	111603109	111603109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.T266G	p.L89R	TAACCCTCTCACA	.	111	68	100	0	.	96	G	111603109	T	G	111603109	3	3	24	1	0	0	0	0	1	0	0	0	11852	1551	54	5	272	5	PHLDB2	3	111603109	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	3	111603109	86419321	34	2755	21	2									
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111794166	111794166	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TMPRSS7	NM_001042575	exon13	c.1406-2A>G	.	CACCAAAGCCTGC	.	104	6	109	0	.	70	G	111794166	A	G	111794166	5	3	24	1	0	0	0	0	0	0	1	0	16249	86	3	2	1450	2	TMPRSS7	3	111794166	Splice_Site	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	191057	111794166	86228264	35	2756											
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148927024	148927024	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CP	NM_000096	exon4	c.A755T	p.D252V	TGGAAGTCTTCGT	.	240	119	261	0	.	515	A	148927024	T	A	148927024	3	1	24	1	0	0	0	0	1	0	0	0	3787	1667	58	4	2506	4	CP	3	148927024	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	37132858	148927024	49095406	36	2757											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	PIK3CA,brain,glioma,0	PIK3CA	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	361	157	331	0	.	27752	A	178936082	G	A	178936082	3	1	24	1	0	0	0	0	1	0	0	0	11913	1291	45	3	1658	3	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	30009058	178936082	19086348	37	2758											
DLG1	1739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197023346	197023346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DLG1	NM_001204386	exon3	c.A22T	p.T8S	TCTGGGTATCTGA	.	116	49	81	0	.	118	A	197023346	T	A	197023346	3	1	24	1	0	0	0	0	1	0	0	0	4554	1638	57	4	2892	4	DLG1	3	197023346	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	18087264	197023346	999084	38	2759											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177224	44177224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCTD8	NM_198353	exon2	c.T1005A	p.D335E	TTTCCTATCTTCA	.	113	53	116	0	.	92	T	44177224	A	T	44177224	3	4	24	1	0	0	0	0	1	0	0	0	8115	446	16	4	420	4	KCTD8	4	44177224	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10		44177224	146977052	39	2760											
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	65274943	65274943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TECRL	NM_001010874	exon1	c.G127A	p.A43T	GGCCCGCTGAGAG	.	123	12	123	0	.	90	T	65274943	C	T	65274943	3	4	24	1	0	0	0	0	1	0	0	0	15743	797	28	3	1012	3	TECRL	4	65274943	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	21097719	65274943	125879333	40	2761											
UBE2D3	7323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103722609	103722609	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	UBE2D3	NM_003340	exon7	c.304+2T>G	.	ATATTTACCTTTA	.	239	179	274	0	.	226	C	103722609	A	C	103722609	5	2	24	1	0	0	0	0	0	0	1	0	16847	405	14	5	202	5	UBE2D3	4	103722609	Splice_Site	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	38447666	103722609	87431667	41	2762											
SPATA5	166378	hgsc.bcm.edu;bcgsc.ca	37	4	123978434	123978445	+	Frame_Shift_Del	DEL	AAAGGGGCAGGT	AAAGGGGCAGGT	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	AAAGGGGCAGGT	AAAGGGGCAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPATA5	NM_145207	exon13	c.2204_2213del	p.735_738del	CAGTTGAAAGGGG	.	148	0	182	0	.	90	-	123978445	AAAGGGGCAGGT	-	123978434	7	5	24	1	0	1	0	1	0	0	0	0	15010	246	9	0	2254	0	SPATA5	4	123978434	Frame_Shift_Del	DEL	AAAGGGGCAGGT	TCGA-CC-5259-01A-31D-A20W-10	20255825	123978434	67175842	42	2763											
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153273838	153273838	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBXW7	NM_018315	exon1	c.T45A	p.L15L	ACAGTAAAGGCAA	.	57	17	55	0	.	6296	T	153273838	A	T	153273838	2	4	24	1	0	0	0	0	0	0	0	1	5769	1	1	4		4	FBXW7	4	153273838	Silent	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	29295404	153273838	37880438	43	2764											
DCHS2	54798	broad.mit.edu;bcgsc.ca	37	4	155156791	155156791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DCHS2	NM_017639	exon25	c.T7648C	p.F2550L	TCAGAAACACTAA	.	155	8	108	0	.	94	G	155156791	A	G	155156791	3	3	24	1	0	0	0	0	1	0	0	0	4288	43	2	2	1106	2	DCHS2	4	155156791	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	1882953	155156791	35997485	44	2765											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155243495	155243495	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DCHS2	NM_017639	exon13	c.T2799A	p.V933V	ATTAACAACTGCC	.	110	48	85	0	.	94	T	155243495	A	T	155243495	2	4	24	1	0	0	0	0	0	0	0	1	4288	117	5	4		4	DCHS2	4	155243495	Silent	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	86704	155243495	35910781	45	2766											
VEGFC	7424	hgsc.bcm.edu;bcgsc.ca	37	4	177605087	177605087	+	Frame_Shift_Del	DEL	A	A	-	rs72533463	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.1253delT	p.M418fs	CTCATCATTTGTG	.	103	49	83	0	.	710	-	177605087	A	-	177605087	7	5	24	1	0	1	0	1	0	0	0	0	17149	217	8	0	13	0	VEGFC	4	177605087	Frame_Shift_Del	DEL	A	TCGA-CC-5259-01A-31D-A20W-10	22361592	177605087	13549189	46	2767											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16761637	16761637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MYO10	NM_012334	exon17	c.G1675T	p.G559C	AGATACCTCGGAC	.	53	29	59	0	.	3	A	16761637	C	A	16761637	3	1	24	1	0	0	0	0	1	0	0	0	10062	681	24	3	4601	3	MYO10	5	16761637	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10		16761637	164153623	47	2768											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38350697	38350697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EGFLAM	NM_001205301	exon4	c.G386C	p.R129P	CTCCTCGGCATGT	.	75	23	74	0	.	187	C	38350697	G	C	38350697	3	2	24	1	0	0	0	0	1	0	0	0	4966	1116	39	4	400	4	EGFLAM	5	38350697	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	21589060	38350697	142564563	48	2769											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118469442	118469442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DMXL1	NM_005509	exon12	c.T1823A	p.L608Q	GTTCTCTGAATCA	.	194	52	176	0	.	92	A	118469442	T	A	118469442	3	1	24	1	0	0	0	0	1	0	0	0	4594	1580	55	4	1869	4	DMXL1	5	118469442	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	80118745	118469442	62445818	49	2770											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127714494	127714494	+	Missense_Mutation	SNP	G	G	T	rs199720456	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBN2	NM_001999	exon12	c.C1693A	p.Q565K	TCCTCTGGAATCC	.	89	31	102	0	G|0.999;A|0.001	146	T	127714494	G	T	127714494	3	4	24	1	0	0	0	0	1	0	0	0	5703	1357	47	3	7261	3	FBN2	5	127714494	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	9245052	127714494	53200766	50	2771											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139892497	139892497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANKHD1	NM_017747	exon23	c.A4189G	p.I1397V	GCAACAATTACAG	.	201	125	179	0	.	185	G	139892497	A	G	139892497	3	3	24	1	0	0	0	0	1	0	0	0	628	101	4	2	4385	2	ANKHD1	5	139892497	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	12178003	139892497	41022763	51	2772											
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154395188	154395188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KIF4B	NM_001099293	exon1	c.A1769G	p.N590S	ATGTCAACCAAGC	.	157	7	145	0	.	1	G	154395188	A	G	154395188	3	3	24	1	0	0	0	0	1	0	0	0	8304	43	2	2	1771	2	KIF4B	5	154395188	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	14502691	154395188	26520072	52	2773											
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178505747	178505747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF354C	NM_014594	exon5	c.C314A	p.T105K	AAGAAACATCTCA	.	168	19	153	0	.	91	A	178505747	C	A	178505747	3	1	24	1	0	0	0	0	1	0	0	0	17863	478	17	3	328	3	ZNF354C	5	178505747	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	24110559	178505747	2409513	53	2774											
MAK	4117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	10818123	10818123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAK	NM_005906	exon4	c.G238T	p.E80X	TATATTCAAATAT	.	150	54	139	0	.	335	A	10818123	C	A	10818123	4	1	24	1	0	0	0	0	0	1	0	0	9197	835	29	3	1677	3	MAK	6	10818123	Nonsense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10		10818123	160296944	54	2775											
GPX6	257202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28478622	28478622	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GPX6	.	.	.	.	CTCGCCGTTGAGG	.	127	59	130	0	.	95	A	28478622	G	A	28478622	2	1	24	1	0	0	0	0	0	0	0	1	6744	1136	40	1		1	GPX6	6	28478622	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	17660499	28478622	142636445	55	2776											
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33411166	33411166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYNGAP1	NM_006772	exon15	c.G2837C	p.G946A	GCCATGGAGGGGG	.	123	71	104	0	.	48	C	33411166	G	C	33411166	3	2	24	1	0	0	0	0	1	0	0	0	15444	1174	41	4	2895	4	SYNGAP1	6	33411166	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	4932544	33411166	137703901	56	2777											
TINAG	27283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	54186162	54186162	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TINAG	NM_014464	exon3	c.C487T	p.Q163X	ATTGAACAGGTCA	.	44	26	49	0	.	93	T	54186162	C	T	54186162	4	4	24	1	0	0	0	0	0	1	0	0	15918	479	17	3	497	3	TINAG	6	54186162	Nonsense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	20774996	54186162	116928905	57	2778											
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73879546	73879546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNQ5	NM_001160133	exon12	c.C1603T	p.P535S	CTCACCCCACCAC	.	195	98	150	0	.	158	T	73879546	C	T	73879546	3	4	24	1	0	0	0	0	1	0	0	0	8086	623	22	3	1649	3	KCNQ5	6	73879546	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	19693384	73879546	97235521	58	2779											
IFNGR1	3459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	137519200	137519200	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IFNGR1	NM_000416	exon7	c.A1438T	p.R480X	TTGGTCTATAACC	.	161	88	137	0	.	91	A	137519200	T	A	137519200	4	1	24	1	0	0	0	0	0	1	0	0	7549	1530	53	4	35	4	IFNGR1	6	137519200	Nonsense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	63639654	137519200	33595867	59	2780											
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160184055	160184055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ACAT2	NM_005891	exon2	c.G160T	p.E54X	GTGTCTGAGGTCA	.	224	55	214	0	.	91	T	160184055	G	T	160184055	4	4	24	1	0	0	0	0	0	1	0	0	122	1291	45	3	166	3	ACAT2	6	160184055	Nonsense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	22664855	160184055	10931012	60	2781											
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166571945	166571945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	T	NM_003181	exon9	c.C1166T	p.P389L	GAGACCGGATGGG	.	151	48	117	0	.	516	A	166571945	G	A	166571945	3	1	24	1	0	0	0	0	1	0	0	0	15485	1116	39	1	145	1	T	6	166571945	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	6387890	166571945	4543122	61	2782											
RNASET2	8635	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167343204	167343204	+	Missense_Mutation	SNP	C	C	T	rs41269593	byfrequency	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RNASET2	NM_003730	exon9	c.G643A	p.E215K	CCGGCTCGGTGCA	.	55	16	64	0	C|0.996;T|0.004	90	T	167343204	C	T	167343204	3	4	24	1	0	0	0	0	1	0	0	0	13418	893	31	1	131	1	RNASET2	6	167343204	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	771259	167343204	3771863	62	2783											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2968238	2968238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CARD11	NM_032415	exon13	c.A1748G	p.H583R	CTGCGATGGGGCG	.	27	9	57	0	.	870	C	2968238	T	C	2968238	3	2	24	1	0	0	0	0	1	0	0	0	2645	1464	51	2	1768	2	CARD11	7	2968238	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10		2968238	156170425	63	2784											
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45688359	45688359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ADCY1	NM_021116	exon5	c.T1111A	p.C371S	CACTGCTGTGTGG	.	184	75	266	0	.	95	A	45688359	T	A	45688359	3	1	24	1	0	0	0	0	1	0	0	0	292	1580	55	4	1129	4	ADCY1	7	45688359	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	42720121	45688359	113450304	64	2785											
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45717579	45717579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ADCY1	NM_021116	exon9	c.T1717A	p.L573I	CGCCTCTTAGAAG	.	180	61	222	0	.	95	A	45717579	T	A	45717579	3	1	24	1	0	0	0	0	1	0	0	0	292	1606	56	4	1751	4	ADCY1	7	45717579	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	29220	45717579	113421084	65	2786											
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86416221	86416221	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GRM3	NM_000840	exon3	c.C1113T	p.R371R	CAGGCGCGTCTGC	.	88	36	95	0	.	528	T	86416221	C	T	86416221	2	4	24	1	0	0	0	0	0	0	0	1	6798	755	27	1		1	GRM3	7	86416221	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	40698642	86416221	72722442	66	2787											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92732475	92732475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SAMD9	NM_001193307	exon2	c.G2936T	p.C979F	ACTCCACAGTAGT	.	122	47	147	0	.	140	A	92732475	C	A	92732475	3	1	24	1	0	0	0	0	1	0	0	0	13826	478	17	3	1837	3	SAMD9	7	92732475	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	6316254	92732475	66406188	67	2788											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103292164	103292164	+	Silent	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RELN	NM_173054	exon15	c.C1836A	p.I612I	AGCACAGATCTCA	.	76	42	104	0	.	574	T	103292164	G	T	103292164	2	4	24	1	0	0	0	0	0	0	0	1	13220	932	33	3		3	RELN	7	103292164	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	10559689	103292164	55846499	68	2789											
PRSS37	136242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141537672	141537672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRSS37	NM_001171951	exon3	c.C418A	p.Q140K	TTTCTTGGCTCCA	.	175	78	214	0	.	91	T	141537672	G	T	141537672	3	4	24	1	0	0	0	0	1	0	0	0	12626	1357	47	3	301	3	PRSS37	7	141537672	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	38245508	141537672	17600991	69	2790											
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22146165	22146165	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIWIL2	NM_001135721	exon8	c.T972C	p.N324N	CTACAATGTTGTT	.	188	105	185	0	.	91	C	22146165	T	C	22146165	2	2	24	1	0	0	0	0	0	0	0	1	11958	1461	51	2		2	PIWIL2	8	22146165	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10		22146165	124217857	70	2791											
IDO2	169355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39873103	39873103	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IDO2	NM_194294	exon11	c.C1245A	p.I415I	GTCAATCCTTCAC	.	92	39	95	0	.	24	A	39873103	C	A	39873103	2	1	24	1	0	0	0	0	0	0	0	1	7502	845	30	3		3	IDO2	8	39873103	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	17726938	39873103	106490919	71	2792											
PRKDC	5591	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	48815178	48815178	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRKDC	.	.	.	.	GCCTCTTGAAAGC	.	74	35	87	0	.	1515	A	48815178	T	A	48815178	4	1	24	1	0	0	0	0	0	1	0	0	12521	1821	63	4	9405	4	PRKDC	8	48815178	Nonsense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	8942075	48815178	97548844	72	2793											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52322116	52322116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PXDNL	NM_144651	exon17	c.C2068T	p.R690W	TGTACCGGAATTC	.	108	56	121	0	.	70	A	52322116	G	A	52322116	3	1	24	1	0	0	0	0	1	0	0	0	12848	1115	39	1	2351	1	PXDNL	8	52322116	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	3506938	52322116	94041906	73	2794											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53540730	53540730	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RB1CC1	NM_014781	exon23	c.4500-2A>C	.	GAAAACTGAATAA	.	75	22	51	0	.	170	G	53540730	T	G	53540730	5	3	24	1	0	0	0	0	0	0	1	0	13099	1594	55	5	298	5	RB1CC1	8	53540730	Splice_Site	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	1218614	53540730	92823292	74	2795											
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61193683	61193683	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CA8	NM_004056	exon1	c.A24T	p.E8D	GGTATCTTCGATG	.	44	19	44	0	.	90	A	61193683	T	A	61193683	3	1	24	1	0	0	0	0	1	0	0	0	2523	1606	56	4	880	4	CA8	8	61193683	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	7652953	61193683	85170339	75	2796											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	69104009	69104009	+	Missense_Mutation	SNP	G	G	T	rs202233704	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PREX2	NM_024870	exon36	c.G4399T	p.A1467S	AAAGCTGCCTATG	.	445	26	233	0	G|0.999;A|0.000	390	T	69104009	G	T	69104009	3	4	24	1	0	0	0	0	1	0	0	0	12477	1319	46	3	4770	3	PREX2	8	69104009	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	7910326	69104009	77260013	76	2797											
FABP9	646480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82371529	82371529	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FABP9	NM_001080526	exon2	c.G117T	p.P39P	TACTGTCGGTTTC	.	249	59	150	0	.	22	A	82371529	C	A	82371529	2	1	24	1	0	0	0	0	0	0	0	1	5363	871	31	1		1	FABP9	8	82371529	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	13267520	82371529	63992493	77	2798											
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	107719001	107719001	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	OXR1	NM_001198532	exon8	c.G1255T	p.E419X	AATCTTGAAATGG	.	177	19	80	0	.	68	T	107719001	G	T	107719001	4	4	24	1	0	0	0	0	0	1	0	0	11334	1291	45	3	1485	3	OXR1	8	107719001	Nonsense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	25347472	107719001	38645021	78	2799											
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116599692	116599692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRPS1	NM_014112	exon5	c.A2236T	p.I746L	TGGATATGGCATG	.	465	84	267	0	.	229	A	116599692	T	A	116599692	3	1	24	1	0	0	0	0	1	0	0	0	16590	1464	51	4	1660	4	TRPS1	8	116599692	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	8880691	116599692	29764330	79	2800											
PIP5K1B	8395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71491629	71491629	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIP5K1B	NM_003558	exon6	c.A237T	p.P79P	CTACCCAGACTTT	.	127	57	102	0	.	240	T	71491629	A	T	71491629	2	4	24	1	0	0	0	0	0	0	0	1	11940	175	7	4		4	PIP5K1B	9	71491629	Silent	SNP	A	TCGA-CC-5259-01A-31D-A20W-10		71491629	69721802	80	2801											
SCAI	286205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127734043	127734043	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCAI	NM_173690	exon17	c.A1549T	p.S517C	GCATGCTTGACAA	.	197	93	147	0	.	138	A	127734043	T	A	127734043	3	1	24	1	0	0	0	0	1	0	0	0	13869	1609	56	4	352	4	SCAI	9	127734043	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	56242414	127734043	13479388	81	2802											
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131859581	131859581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CRAT	NM_000755	exon12	c.A1475T	p.K492M	TCCACCTTCTGGT	.	67	27	45	0	.	90	A	131859581	T	A	131859581	3	1	24	1	0	0	0	0	1	0	0	0	3847	1609	56	4	417	4	CRAT	9	131859581	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	4125538	131859581	9353850	82	2803											
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139749459	139749459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAMDC4	NM_206920	exon10	c.C1094T	p.P365L	TGGGGCCCGGCGC	.	74	37	42	0	.	156	T	139749459	C	T	139749459	3	4	24	1	0	0	0	0	1	0	0	0	9204	623	22	3	1132	3	MAMDC4	9	139749459	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	7889878	139749459	1463972	83	2804											
NET1	10276	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5494450	5494450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NET1	NM_001047160	exon5	c.A493G	p.K165E	ACCATGAAGGAGT	.	146	8	109	0	.	290	G	5494450	A	G	5494450	3	3	24	1	0	0	0	0	1	0	0	0	10338	247	9	2	608	2	NET1	10	5494450	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10		5494450	130040297	84	2805											
PLXDC2	84898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	20453406	20453406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PLXDC2	NM_032812	exon7	c.793delT	p.L265fs	CCTGTCTTGGTCA	.	105	43	86	0	.	93	-	20453406	T	-	20453406	7	5	24	1	0	1	0	1	0	0	0	0	12118	1606	56	0	819	0	PLXDC2	10	20453406	Frame_Shift_Del	DEL	T	TCGA-CC-5259-01A-31D-A20W-10	14958956	20453406	115081341	85	2806											
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23244747	23244747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARMC3	NM_173081	exon4	c.A178G	p.K60E	GAAAATAAAACAA	.	64	19	43	0	.	90	G	23244747	A	G	23244747	3	3	24	1	0	0	0	0	1	0	0	0	952	363	13	2	188	2	ARMC3	10	23244747	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	2791341	23244747	112290000	86	2807											
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27324233	27324233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANKRD26	NM_014915	exon24	c.A3146G	p.N1049S	TCAAAATTCATTT	.	155	69	126	0	.	138	C	27324233	T	C	27324233	3	2	24	1	0	0	0	0	1	0	0	0	654	1493	52	2	2030	2	ANKRD26	10	27324233	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	4079486	27324233	108210514	87	2808											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	55996688	55996688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCDH15	NM_001142763	exon10	c.G895T	p.E299X	TCAGTTCTTCCTG	.	156	42	129	0	.	193	A	55996688	C	A	55996688	4	1	24	1	0	0	0	0	0	1	0	0	11511	922	32	3	6731	3	PCDH15	10	55996688	Nonsense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	28672455	55996688	79538059	88	2809											
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	75414002	75414002	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYNPO2L	NM_001114133	exon2	c.C142T	p.R48X	TCTCTCGGAGTCC	.	143	14	175	0	.	91	A	75414002	G	A	75414002	4	1	24	1	0	0	0	0	0	1	0	0	15455	1124	39	1	2907	1	SYNPO2L	10	75414002	Nonsense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	19417314	75414002	60120745	89	2810											
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	119001223	119001223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC18A2	NM_003054	exon2	c.G19C	p.A7P	GAGCTGGCGCTGG	.	61	38	86	0	.	90	C	119001223	G	C	119001223	3	2	24	1	0	0	0	0	1	0	0	0	14426	1203	42	4	21	4	SLC18A2	10	119001223	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	43587221	119001223	16533524	90	2811											
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128798514	128798514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DOCK1	NM_001380	exon10	c.A928T	p.R310W	GAGCTGAGGGACA	.	125	46	132	0	.	698	T	128798514	A	T	128798514	3	4	24	1	0	0	0	0	1	0	0	0	4684	295	11	4	966	4	DOCK1	10	128798514	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	9797291	128798514	6736233	91	2812											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135009191	135009191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KNDC1	NM_152643	exon10	c.G1600A	p.V534I	GCCGCCGTTCTGT	.	257	65	346	0	.	229	A	135009191	G	A	135009191	3	1	24	1	0	0	0	0	1	0	0	0	8426	1145	40	1	1638	1	KNDC1	10	135009191	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	6210677	135009191	525556	92	2813											
DENND5A	23258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	9192221	9192221	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DENND5A	NM_001243254	exon9	c.C2010T	p.F670F	CTTAGGGAAGAAG	.	242	16	197	1	.	91	A	9192221	G	A	9192221	2	1	24	1	0	0	0	0	0	0	0	1	4436	1165	41	3		3	DENND5A	11	9192221	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		9192221	125814295	93	2814											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56468094	56468094	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001013358	exon1	c.C231A	p.T77T	CTACACCCCAAAG	.	234	53	199	0	.	.	A	56468094	C	A	56468094	2	1	24	1	0	0	0	0	0	0	0	1	11252	610	22	3		3	OR9G9	11	56468094	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	47275873	56468094	78538422	94	2815											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62292811	62292811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	AHNAK	NM_001620	exon5	c.A9078T	p.K3026N	GGGCATTTTCACT	.	162	67	165	0	.	109	A	62292811	T	A	62292811	3	1	24	1	0	0	0	0	1	0	0	0	414	1838	64	4	8714	4	AHNAK	11	62292811	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	5824717	62292811	72713705	95	2816											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66463896	66463896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPTBN2	NM_006946	exon20	c.G4130A	p.R1377H	AGGCTGCGGGCCT	.	66	23	48	0	.	155	T	66463896	C	T	66463896	3	4	24	1	0	0	0	0	1	0	0	0	15119	768	27	1	3114	1	SPTBN2	11	66463896	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	4171085	66463896	68542620	96	2817											
PCF11	51585	hgsc.bcm.edu;bcgsc.ca	37	11	82879771	82879771	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCF11	NM_015885	exon8	c.2394delG	p.M798fs	ACAAATGGGGGGA	.	117	16	80	0	.	23	-	82879771	G	-	82879771	7	5	24	1	0	1	0	1	0	0	0	0	11573	1348	47	0	2424	0	PCF11	11	82879771	Frame_Shift_Del	DEL	G	TCGA-CC-5259-01A-31D-A20W-10	16415875	82879771	52126745	97	2818											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113078628	113078628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NCAM1	NM_001242608	exon8	c.A820G	p.I274V	CTGACCATCAAAA	.	95	37	75	0	.	23	G	113078628	A	G	113078628	3	3	24	1	0	0	0	0	1	0	0	0	10202	217	8	2	847	2	NCAM1	11	113078628	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	30198857	113078628	21927888	98	2819											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117301488	117301488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DSCAML1	NM_020693	exon32	c.C5816T	p.A1939V	CGGTCCGCATCCT	.	152	9	140	0	.	159	A	117301488	G	A	117301488	3	1	24	1	0	0	0	0	1	0	0	0	4769	1087	38	1	533	1	DSCAML1	11	117301488	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	4222860	117301488	17705028	99	2820											
ACSM4	341392	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	7470658	7470658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001080454	exon5	c.G801C	p.W267C	CATATGGAATATG	.	303	22	246	2	.	.	C	7470658	G	C	7470658	3	2	24	1	0	0	0	0	1	0	0	0	186	1183	41	4	819	4	ACSM4	12	7470658	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		7470658	126381237	100	2821											
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57493655	57493655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	STAT6	NM_001178079	exon15	c.G1639A	p.V547I	TAGTAACGTACTG	.	169	43	185	0	.	849	T	57493655	C	T	57493655	3	4	24	1	0	0	0	0	1	0	0	0	15269	536	19	1	936	1	STAT6	12	57493655	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	50022997	57493655	76358240	101	2822											
HELB	92797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66703544	66703544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HELB	NM_033647	exon4	c.A836T	p.Q279L	TTTGTCAGTGTGA	.	156	101	147	0	.	515	T	66703544	A	T	66703544	3	4	24	1	0	0	0	0	1	0	0	0	7045	188	7	4	850	4	HELB	12	66703544	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	9209889	66703544	67148351	102	2823											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101381353	101381353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANO4	NM_178826	exon7	c.A534T	p.L178F	ATGGTTACCTAAG	.	86	47	87	0	.	96	T	101381353	A	T	101381353	3	4	24	1	0	0	0	0	1	0	0	0	699	388	14	4	556	4	ANO4	12	101381353	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	34677809	101381353	32470542	103	2824											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104149204	104149204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	STAB2	NM_017564	exon62	c.A6839G	p.N2280S	GACCCAACAAGAG	.	156	86	149	0	.	104	G	104149204	A	G	104149204	3	3	24	1	0	0	0	0	1	0	0	0	15237	43	2	2	7085	2	STAB2	12	104149204	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	2767851	104149204	29702691	104	2825											
HPD	3242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122287654	122287654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HPD	NM_002150	exon8	c.A457G	p.I153V	GGCCGATGTAGTT	.	165	36	140	0	.	90	C	122287654	T	C	122287654	3	2	24	1	0	0	0	0	1	0	0	0	7332	1464	51	2	752	2	HPD	12	122287654	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	18138450	122287654	11564241	105	2826											
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	67801363	67801363	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCDH9	NM_203487	exon2	c.G1210T	p.E404X	CTCTTTCAATAAA	.	71	62	108	0	.	96	A	67801363	C	A	67801363	4	1	24	1	0	0	0	0	0	1	0	0	11518	835	29	3	2519	3	PCDH9	13	67801363	Nonsense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10		67801363	47368515	106	2827											
FMN1	342184	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33359290	33359290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FMN1	NM_001103184	exon1	c.T796A	p.S266T	CTCCAGAGACTTC	.	88	62	119	1	.	23	T	33359290	A	T	33359290	3	4	24	1	0	0	0	0	1	0	0	0	5949	304	11	4	2862	4	FMN1	15	33359290	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10		33359290	69172102	107	2828											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	45427708	45427708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DUOX1	NM_017434	exon7	c.A532G	p.I178V	AGCGCCATCTATG	.	44	22	126	0	.	142	G	45427708	A	G	45427708	3	3	24	1	0	0	0	0	1	0	0	0	4800	217	8	2	550	2	DUOX1	15	45427708	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	12068418	45427708	57103684	108	2829											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51828802	51828802	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DMXL2	NM_001174117	exon12	c.A1875T	p.A625A	AGTGACTGCCCAC	.	94	69	165	1	.	99	A	51828802	T	A	51828802	2	1	24	1	0	0	0	0	0	0	0	1	4595	1567	55	4		4	DMXL2	15	51828802	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	6401094	51828802	50702590	109	2830											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52622690	52622690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MYO5A	NM_000259	exon34	c.A4340T	p.Q1447L	TCCATCTGGCCCA	.	154	101	192	0	.	93	A	52622690	T	A	52622690	3	1	24	1	0	0	0	0	1	0	0	0	10078	1580	55	4	1259	4	MYO5A	15	52622690	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	793888	52622690	49908702	110	2831											
HCN4	10021	broad.mit.edu;mdanderson.org	37	15	73615574	73615574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HCN4	NM_005477	exon8	c.C2860G	p.L954V	CCGGGAGTCCCAG	.	15	7	27	0	.	96	C	73615574	G	C	73615574	3	2	24	1	0	0	0	0	1	0	0	0	6999	1029	36	4	755	4	HCN4	15	73615574	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	20992884	73615574	28915818	111	2832											
TRAF7	84231	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2225896	2225896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRAF7	NM_032271	exon18	c.A1688T	p.Y563F	GCGTCTACTCCAT	.	217	87	195	1	.	661	T	2225896	A	T	2225896	3	4	24	1	0	0	0	0	1	0	0	0	16443	391	14	4	1754	4	TRAF7	16	2225896	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10		2225896	88128857	112	2833											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21061288	21061288	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DNAH3	NM_017539	exon30	c.A4290T	p.P1430P	CCCAGCTGGACCC	.	62	25	65	0	.	167	A	21061288	T	A	21061288	2	1	24	1	0	0	0	0	0	0	0	1	4603	1567	55	4		4	DNAH3	16	21061288	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	18835392	21061288	69293465	113	2834											
PAPD5	64282	broad.mit.edu;bcgsc.ca	37	16	50259196	50259196	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PAPD5	NM_001040284	exon11	c.A1755G	p.V585V	TGATGTAGTAAGT	.	121	45	99	2	.	205	G	50259196	A	G	50259196	2	3	24	1	0	0	0	0	0	0	0	1	11425	434	15	2		2	PAPD5	16	50259196	Silent	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	29197908	50259196	40095557	114	2835											
RAP1GAP2	23108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2929754	2929754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RAP1GAP2	NM_015085	exon21	c.G1976A	p.S659N	GCGACAGTGGGGT	.	119	98	144	0	.	1	A	2929754	G	A	2929754	3	1	24	1	0	0	0	0	1	0	0	0	13038	1029	36	3	2058	3	RAP1GAP2	17	2929754	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		2929754	78265456	115	2836											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579312	7579312	+	Silent	SNP	C	C	A	rs55863639		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	TP53,mouth,carcinoma,-1	TP53	NM_000546	exon4	c.G375T	p.T125T	ACTGACCGTGCAA	.	159	124	157	0	.	70225	A	7579312	C	A	7579312	2	1	24	1	0	0	0	0	0	0	0	1	16378	666	23	1		1	TP53	17	7579312	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	4649558	7579312	73615898	116	2837											
KRTAP4-2	85291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39334191	39334191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRTAP4-2	NM_033062	exon1	c.T226A	p.C76S	GACGGCAGCAGGT	.	85	66	74	0	.	44	T	39334191	A	T	39334191	3	4	24	1	0	0	0	0	1	0	0	0	8551	188	7	4	188	4	KRTAP4-2	17	39334191	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	31754879	39334191	41861019	117	2838											
KRT34	3885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39535916	39535916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRT34	NM_021013	exon4	c.T782C	p.V261A	AGGTCCACAGTGG	.	126	89	188	0	.	90	G	39535916	A	G	39535916	3	3	24	1	0	0	0	0	1	0	0	0	8471	159	6	2	544	2	KRT34	17	39535916	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	201725	39535916	41659294	118	2839											
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39597173	39597173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRT38	NM_006771	exon1	c.A1G	p.M1V	AGGTCATGGTGTT	.	153	118	198	0	.	92	C	39597173	T	C	39597173	3	2	24	1	0	0	0	0	1	0	0	0	8475	1464	51	2	1397	2	KRT38	17	39597173	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	61257	39597173	41598037	119	2840											
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61513455	61513455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CYB561	NM_001915	exon3	c.C261A	p.H87Q	CAGCCCGTGCAGG	.	99	58	116	0	.	91	T	61513455	G	T	61513455	3	4	24	1	0	0	0	0	1	0	0	0	4119	1136	40	1	510	1	CYB561	17	61513455	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	21916282	61513455	19681755	120	2841											
CCDC47	57003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61829358	61829358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC47	NM_020198	exon12	c.G1313T	p.R438I	TCTGCTCTTTTTT	.	126	73	156	0	.	90	A	61829358	C	A	61829358	3	1	24	1	0	0	0	0	1	0	0	0	2818	913	32	3	146	3	CCDC47	17	61829358	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	315903	61829358	19365852	121	2842											
FHOD3	80206	ucsc.edu;bcgsc.ca	37	18	34182638	34182638	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FHOD3	NM_025135	exon8	c.G720A	p.G240G	CATAGGGGTCAAA	.	220	93	183	2	.	139	A	34182638	G	A	34182638	2	1	24	1	0	0	0	0	0	0	0	1	5883	1246	43	3		3	FHOD3	18	34182638	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		34182638	43894610	122	2843											
TCF4	6925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	53018190	53018190	+	Silent	SNP	G	G	A	rs201061418	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCF4	NM_001243226	exon8	c.C720T	p.T240T	CGAAAGGGTTCCT	.	205	102	182	1	G|0.999;C|0.000	523	A	53018190	G	A	53018190	2	1	24	1	0	0	0	0	0	0	0	1	15692	1219	43	3		3	TCF4	18	53018190	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	18835552	53018190	25059058	123	2844											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2214500	2214500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DOT1L	NM_032482	exon19	c.G1828T	p.D610Y	CAGCTGGACTGGG	.	384	18	172	0	.	132	T	2214500	G	T	2214500	3	4	24	1	0	0	0	0	1	0	0	0	4709	1174	41	3	1902	3	DOT1L	19	2214500	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		2214500	56914483	124	2845											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9065780	9065780	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MUC16	NM_024690	exon3	c.T21666A	p.T7222T	GGCAACAGTTGTA	.	153	106	270	1	.	566	T	9065780	A	T	9065780	2	4	24	1	0	0	0	0	0	0	0	1	9973	175	7	4		4	MUC16	19	9065780	Silent	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	6851280	9065780	50063203	125	2846											
HSH2D	84941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16263989	16263989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_032855	exon6	c.A352G	p.R118G	CCGCGCAGGGAGC	.	74	9	62	1	.	.	G	16263989	A	G	16263989	3	3	24	1	0	0	0	0	1	0	0	0	7400	179	7	2	362	2	HSH2D	19	16263989	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	7198209	16263989	42864994	126	2847											
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	23544469	23544469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF91	NM_003430	exon4	c.G1312A	p.E438K	CACATTCTTCACA	.	51	9	62	0	.	90	T	23544469	C	T	23544469	3	4	24	1	0	0	0	0	1	0	0	0	18197	922	32	3	2267	3	ZNF91	19	23544469	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	7280480	23544469	35584514	127	2848											
PEPD	5184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34001941	34001941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PEPD	NM_000285	exon3	c.A322T	p.M108L	TTCCCATCCAGGT	.	88	30	64	0	.	92	A	34001941	T	A	34001941	3	1	24	1	0	0	0	0	1	0	0	0	11728	1435	50	4	1211	4	PEPD	19	34001941	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	10457472	34001941	25127042	128	2849											
ZNF260	339324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37005748	37005748	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF260	NM_001166038	exon3	c.A393T	p.T131T	GGTTCCTGTATGA	.	211	40	86	1	.	90	A	37005748	T	A	37005748	2	1	24	1	0	0	0	0	0	0	0	1	17799	1567	55	4		4	ZNF260	19	37005748	Silent	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	3003807	37005748	22123235	129	2850											
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	37210908	37210908	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF567	NM_152603	exon4	c.A1189T	p.K397X	TGTGGGAAATCCT	.	97	10	39	0	.	90	T	37210908	A	T	37210908	4	4	24	1	0	0	0	0	0	1	0	0	17995	247	9	4	1199	4	ZNF567	19	37210908	Nonsense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	205160	37210908	21918075	130	2851											
ZNF224	7767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44611314	44611314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF224	NM_013398	exon6	c.A1001T	p.H334L	ATAGTCATCGCAT	.	175	44	74	0	.	92	T	44611314	A	T	44611314	3	4	24	1	0	0	0	0	1	0	0	0	17775	217	8	4	1015	4	ZNF224	19	44611314	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	7400406	44611314	14517669	131	2852											
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260278	45260278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCL3	NM_005178	exon4	c.C524T	p.P175L	AGACACCGCTCCA	.	537	101	210	0	.	848	T	45260278	C	T	45260278	3	4	24	1	0	0	0	0	1	0	0	0	1375	652	23	1	538	1	BCL3	19	45260278	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	648964	45260278	13868705	132	2853											
CEACAM18	729767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51981868	51981868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CEACAM18	NM_001080405	exon2	c.C155A	p.P52H	AGGGACCCCTCCT	.	203	32	82	0	.	23	A	51981868	C	A	51981868	3	1	24	1	0	0	0	0	1	0	0	0	3189	623	22	3	161	3	CEACAM18	19	51981868	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	6721590	51981868	7147115	133	2854											
BRSK1	84446	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55795935	55795935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BRSK1	NM_032430	exon1	c.A125T	p.K42I	TGGGCAAAGGACA	.	554	97	320	1	.	759	T	55795935	A	T	55795935	3	4	24	1	0	0	0	0	1	0	0	0	1523	14	1	4	127	4	BRSK1	19	55795935	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	3814067	55795935	3333048	134	2855											
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58578450	58578450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF135	NM_007134	exon4	c.G670C	p.D224H	AAGCCAGACCTAA	.	110	34	50	0	.	91	C	58578450	G	C	58578450	3	2	24	1	0	0	0	0	1	0	0	0	17722	942	33	4	801	4	ZNF135	19	58578450	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	2782515	58578450	550533	135	2856											
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32207387	32207387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CBFA2T2	NM_005093	exon5	c.G512T	p.R171L	CCCTTCGTCCTTT	.	137	62	123	0	.	92	T	32207387	G	T	32207387	3	4	24	1	0	0	0	0	1	0	0	0	2697	1145	40	1	564	1	CBFA2T2	20	32207387	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		32207387	30818133	136	2857											
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43727336	43727336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNS1	NM_002251	exon4	c.G77A	p.G26E	CTCCTCCCTGCGG	.	52	18	47	0	.	90	T	43727336	C	T	43727336	3	4	24	1	0	0	0	0	1	0	0	0	8088	637	22	3	1511	3	KCNS1	20	43727336	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	11519949	43727336	19298184	137	2858											
KCNG1	3755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49621256	49621256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNG1	NM_002237	exon3	c.A862G	p.I288V	CCTGAATGAGCCG	.	256	113	196	0	.	515	C	49621256	T	C	49621256	3	2	24	1	0	0	0	0	1	0	0	0	8027	1464	51	2	683	2	KCNG1	20	49621256	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	5893920	49621256	13404264	138	2859											
BCAS1	8537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52645509	52645509	+	Missense_Mutation	SNP	C	C	T	rs146806249		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCAS1	NM_003657	exon4	c.G145A	p.D49N	CCAAGTCGACTGT	.	36	18	33	0	C|1.000;T|0.000	652	T	52645509	C	T	52645509	3	4	24	1	0	0	0	0	1	0	0	0	1350	884	31	1	1645	1	BCAS1	20	52645509	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	3024253	52645509	10380011	139	2860											
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu	37	20	58467120	58467121	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYCP2	NM_014258	exon23	c.2289_2290insA	p.N763fs	TTGCACATTTTTG	.	195	15	150	0	.	525	T	58467121	-	T	58467120	7	5	24	1	0	1	1	0	0	0	0	0	15429	214	8	0	2391	0	SYCP2	20	58467120	Frame_Shift_Ins	INS	-	TCGA-CC-5259-01A-31D-A20W-10	5821611	58467120	4558400	140	2861											
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61467861	61467861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	COL9A3	NM_001853	exon29	c.A1580T	p.E527V	TCAGGGAGCTGTG	.	81	26	99	0	.	514	T	61467861	A	T	61467861	3	4	24	1	0	0	0	0	1	0	0	0	3709	304	11	4	1694	4	COL9A3	20	61467861	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	3000741	61467861	1557659	141	2862											
TCP10L	140290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33954534	33954534	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCP10L	NM_144659	exon3	c.C336T	p.H112H	CCCCGCGTGTGGG	.	240	112	321	0	.	90	A	33954534	G	A	33954534	2	1	24	1	0	0	0	0	0	0	0	1	15708	1136	40	1		1	TCP10L	21	33954534	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		33954534	14175361	142	2863											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44838314	44838314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SIK1	NM_173354	exon12	c.C1570T	p.P524S	TGGCCGGGGTGCC	.	55	39	52	0	.	346	A	44838314	G	A	44838314	3	1	24	1	0	0	0	0	1	0	0	0	14317	1232	43	3	793	3	SIK1	21	44838314	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	10883780	44838314	3291581	143	2864											
RIMBP3	85376	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	20458548	20458548	+	Silent	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_015672	exon1	c.C2754G	p.L918L	CGCTGGGAGTTGA	.	652	37	1012	0	.	.	C	20458548	G	C	20458548	2	2	24	1	0	0	0	0	0	0	0	1	13364	1161	41	4		4	RIMBP3	22	20458548	Silent	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		20458548	30846018	144	2865											
DRG1	4733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31799026	31799026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DRG1	NM_004147	exon3	c.G178T	p.A60S	GATGTGGCCAAGA	.	277	13	417	0	.	90	T	31799026	G	T	31799026	3	4	24	1	0	0	0	0	1	0	0	0	4761	1203	42	3	188	3	DRG1	22	31799026	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	11340478	31799026	19505540	145	2866											
PHF5A	84844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41863491	41863491	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHF5A	NM_032758	exon3	c.T204C	p.D68D	ATAGGCATCAGAG	.	141	99	171	0	.	91	G	41863491	A	G	41863491	2	3	24	1	0	0	0	0	0	0	0	1	11837	214	8	2		2	PHF5A	22	41863491	Silent	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	10064465	41863491	9441075	146	2867											
CCDC134	79879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42209427	42209427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC134	NM_024821	exon5	c.C470T	p.P157L	AGGGGCCCCACTC	.	166	128	187	1	.	92	T	42209427	C	T	42209427	3	4	24	1	0	0	0	0	1	0	0	0	2768	623	22	3	484	3	CCDC134	22	42209427	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	345936	42209427	9095139	147	2868											
EGFL6	25975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13645318	13645318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EGFL6	NM_001167890	exon11	c.G1477C	p.E493Q	GCATGGGAGAAGA	.	126	58	117	0	.	193	C	13645318	G	C	13645318	3	2	24	1	0	0	0	0	1	0	0	0	4963	1175	41	4	1519	4	EGFL6	23	13645318	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10		13645318	141625242	148	2869											
RAI2	10742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	17819079	17819079	+	Missense_Mutation	SNP	C	C	T	rs140631545		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RAI2	NM_001172739	exon3	c.G1052A	p.R351Q	GATTTCCGGTGGG	.	149	12	132	0	C|1.000;T|0.000	131	T	17819079	C	T	17819079	3	4	24	1	0	0	0	0	1	0	0	0	13009	652	23	1	544	1	RAI2	23	17819079	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	4173761	17819079	137451481	149	2870											
MAGEB18	286514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	26157856	26157856	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAGEB18	NM_173699	exon2	c.A754T	p.K252X	CAGCTAAAGTACC	.	251	79	245	0	.	130	T	26157856	A	T	26157856	4	4	24	1	0	0	0	0	0	1	0	0	9175	15	1	4	756	4	MAGEB18	23	26157856	Nonsense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	8338777	26157856	129112704	150	2871											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	39922123	39922123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCOR	NM_001123385	exon9	c.A4049T	p.Y1350F	TCGGTGTATTTCT	.	341	118	373	1	.	229	A	39922123	T	A	39922123	3	1	24	1	0	0	0	0	1	0	0	0	1386	1638	57	4	1246	4	BCOR	23	39922123	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	13764267	39922123	115348437	151	2872											
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	49126933	49126933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PPP1R3F	NM_033215	exon1	c.C601T	p.R201C	GTCCCGCGCAGCC	.	36	14	28	0	.	229	T	49126933	C	T	49126933	3	4	24	1	0	0	0	0	1	0	0	0	12375	768	27	1	603	1	PPP1R3F	23	49126933	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	9204810	49126933	106143627	152	2873											
ZMYM3	9203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70467743	70467743	+	Silent	SNP	C	C	T	rs200745411		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZMYM3	NM_005096	exon12	c.G1989A	p.L663L	TTTGTACAGCAGC	.	204	67	190	0	.	131	T	70467743	C	T	70467743	2	4	24	1	0	0	0	0	0	0	0	1	17698	465	17	3		3	ZMYM3	23	70467743	Silent	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	21340810	70467743	84802817	153	2874											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70617219	70617219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TAF1	NM_004606	exon23	c.G3583A	p.E1195K	CGAGATGAAGAGG	.	569	217	520	1	.	900	A	70617219	G	A	70617219	3	1	24	1	0	0	0	0	1	0	0	0	15510	1291	45	3	3673	3	TAF1	23	70617219	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	149476	70617219	84653341	154	2875											
ATP7A	538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77244075	77244075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ATP7A	NM_000052	exon3	c.T458C	p.L153P	GGACACTGGAGAA	.	237	89	199	0	.	130	C	77244075	T	C	77244075	3	2	24	1	0	0	0	0	1	0	0	0	1190	1580	55	2	464	2	ATP7A	23	77244075	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	6626856	77244075	78026485	155	2876											
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83389790	83389790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RPS6KA6	NM_014496	exon8	c.G646A	p.D216N	GCATACCTGTTAA	.	144	47	109	0	.	615	T	83389790	C	T	83389790	3	4	24	1	0	0	0	0	1	0	0	0	13655	695	24	3	1651	3	RPS6KA6	23	83389790	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	6145715	83389790	71880770	156	2877											
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	86873049	86873049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	KLHL4,NS,carcinoma,0	KLHL4	NM_019117	exon4	c.C842A	p.P281H	TCCATCCTTCAAA	.	343	155	335	0	.	133	A	86873049	C	A	86873049	3	1	24	1	0	0	0	0	1	0	0	0	8391	681	24	3	856	3	KLHL4	23	86873049	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	3483259	86873049	68397511	157	2878											
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100880696	100880696	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARMCX3	NM_016607	exon5	c.727delA	p.N243fs	CTTGCTAATTCCA	.	177	89	161	0	.	131	-	100880696	A	-	100880696	7	5	24	1	0	1	0	1	0	0	0	0	961	362	13	0	729	0	ARMCX3	23	100880696	Frame_Shift_Del	DEL	A	TCGA-CC-5259-01A-31D-A20W-10	14007647	100880696	54389864	158	2879											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134989876	134989876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SAGE1	NM_018666	exon10	c.C1035A	p.H345Q	CACTCACAATGTC	.	235	97	215	0	.	133	A	134989876	C	A	134989876	3	1	24	1	0	0	0	0	1	0	0	0	13809	477	17	3	1069	3	SAGE1	23	134989876	Missense_Mutation	SNP	C	TCGA-CC-5259-01A-31D-A20W-10	34109180	134989876	20280684	159	2880											
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140983104	140983104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAGEC3	NM_138702	exon5	c.T959C	p.L320P	TTGCACTGTGGGA	.	337	132	329	1	.	555	C	140983104	T	C	140983104	3	2	24	1	0	0	0	0	1	0	0	0	9182	1580	55	2	977	2	MAGEC3	23	140983104	Missense_Mutation	SNP	T	TCGA-CC-5259-01A-31D-A20W-10	5993228	140983104	14287456	160	2881											
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	150912895	150912895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CNGA2	NM_005140	exon7	c.G1920T	p.M640I	CAAGATGAAACAG	.	111	8	124	0	.	193	T	150912895	G	T	150912895	3	4	24	1	0	0	0	0	1	0	0	0	3597	1290	45	3	1942	3	CNGA2	23	150912895	Missense_Mutation	SNP	G	TCGA-CC-5259-01A-31D-A20W-10	9929791	150912895	4357665	161	2882											
NSDHL	50814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152018893	152018893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NSDHL	NM_015922	exon3	c.A193G	p.N65D	GCTGTCAATGTAT	.	229	102	240	0	.	130	G	152018893	A	G	152018893	3	3	24	1	0	0	0	0	1	0	0	0	10670	130	5	2	199	2	NSDHL	23	152018893	Missense_Mutation	SNP	A	TCGA-CC-5259-01A-31D-A20W-10	1105998	152018893	3251667	162	2883											
HTR6	3362	broad.mit.edu;mdanderson.org	37	1	20005787	20005787	+	Missense_Mutation	SNP	G	G	A	rs200009000		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HTR6	NM_000871	exon3	c.G1249A	p.A417T	GCTGCCGCCGTCA	.	33	13	26	0	.	91	A	20005787	G	A	20005787	3	1	25	1	0	0	0	0	1	0	0	0	7451	1087	38	1	1259	1	HTR6	1	20005787	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		20005787	229244834	1	2884											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39907974	39907974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MACF1	NM_012090	exon73	c.G12753T	p.E4251D	GGGTGAGAAAATT	.	123	39	128	0	.	165	T	39907974	G	T	39907974	3	4	25	1	0	0	0	0	1	0	0	0	9144	933	33	3	19190	3	MACF1	1	39907974	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	19902187	39907974	209342647	2	2885											
PRKAA2	5563	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	57161707	57161707	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRKAA2	NM_006252	exon6	c.G663A	p.T221T	ACCTACGTTATTT	.	595	37	568	1	.	885	A	57161707	G	A	57161707	2	1	25	1	0	0	0	0	0	0	0	1	12494	1132	40	1		1	PRKAA2	1	57161707	Silent	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	17253733	57161707	192088914	3	2886											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109339272	109339272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STXBP3	NM_007269	exon15	c.T1280A	p.I427N	GGTTGATCCAGAA	.	208	61	230	0	.	93	A	109339272	T	A	109339272	3	1	25	1	0	0	0	0	1	0	0	0	15353	1435	50	4	1338	4	STXBP3	1	109339272	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	52177565	109339272	139911349	4	2887											
TUFT1	7286	broad.mit.edu;bcgsc.ca	37	1	151553434	151553434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TUFT1	NM_020127	exon12	c.A1025G	p.D342G	TGCATGACCGGAT	.	84	6	77	0	.	90	G	151553434	A	G	151553434	3	3	25	1	0	0	0	0	1	0	0	0	16769	275	10	2	1071	2	TUFT1	1	151553434	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	42214162	151553434	97697187	5	2888											
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152732812	152732812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KPRP	NM_001025231	exon2	c.C748T	p.R250W	CGCTCTCGGAGCA	.	82	26	58	0	.	95	T	152732812	C	T	152732812	3	4	25	1	0	0	0	0	1	0	0	0	8436	875	31	1	750	1	KPRP	1	152732812	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	1179378	152732812	96517809	6	2889											
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158325699	158325699	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CD1E	NM_001042584	exon4	c.C708T	p.Y236Y	ATTCTACCCAAAG	.	320	14	273	0	.	93	T	158325699	C	T	158325699	2	4	25	1	0	0	0	0	0	0	0	1	2978	518	18	3		3	CD1E	1	158325699	Silent	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	5592887	158325699	90924922	7	2890											
LRRN2	10446	ucsc.edu;bcgsc.ca	37	1	204587323	204587323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRRN2	NM_006338	exon3	c.G1798A	p.A600T	CAAAGGCCACTTG	.	51	5	29	0	.	514	T	204587323	C	T	204587323	3	4	25	1	0	0	0	0	1	0	0	0	9035	739	26	3	347	3	LRRN2	1	204587323	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	46261624	204587323	44663298	8	2891											
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44053584	44053584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABCG5	NM_022436	exon6	c.A711C	p.E237D	AGCCAGTTCCACC	.	184	61	150	0	.	92	G	44053584	T	G	44053584	3	3	25	1	0	0	0	0	1	0	0	0	71	1722	60	5	1276	5	ABCG5	2	44053584	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10		44053584	199145789	9	2892											
CCDC104	112942	hgsc.bcm.edu;bcgsc.ca	37	2	55772122	55772124	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC104	NM_080667	exon10	c.1007_1009del	p.336_337del	AACTCAAAGAAGA	.	264	59	446	0	.	91	-	55772124	AAG	-	55772122	7	5	25	1	0	1	0	1	0	0	0	0	2739	14	1	0	1045	0	CCDC104	2	55772122	In_Frame_Del	DEL	AAG	TCGA-CC-5260-01A-01D-A12Z-10	11718538	55772122	187427251	10	2893											
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175624066	175624066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHRNA1	NM_001039523	exon3	c.T227A	p.L76Q	TGTTTCAGACGCA	.	247	78	216	0	.	518	T	175624066	A	T	175624066	3	4	25	1	0	0	0	0	1	0	0	0	3381	188	7	4	1253	4	CHRNA1	2	175624066	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	119851944	175624066	67575307	11	2894											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	294	86	267	0	.	23522	A	209113113	G	A	209113113	3	1	25	1	0	0	0	0	1	0	0	0	7494	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	33489047	209113113	34086260	12	2895											
USP37	57695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219423315	219423315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	USP37	NM_020935	exon4	c.62delA	p.K21fs	TTCCACTTTGTAA	.	301	86	335	0	.	661	-	219423315	T	-	219423315	7	5	25	1	0	1	0	1	0	0	0	0	17065	1609	56	0	2969	0	USP37	2	219423315	Frame_Shift_Del	DEL	T	TCGA-CC-5260-01A-01D-A12Z-10	10310202	219423315	23776058	13	2896											
SCN10A	6336	ucsc.edu;bcgsc.ca	37	3	38830477	38830477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SCN10A	NM_006514	exon3	c.T440C	p.M147T	CGGGTCATGCACA	.	42	5	113	0	.	99	G	38830477	A	G	38830477	3	3	25	1	0	0	0	0	1	0	0	0	13912	217	8	2	5530	2	SCN10A	3	38830477	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10		38830477	159191953	14	2897											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52437456	52437456	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BAP1	NM_004656	exon13	c.1705delG	p.V569fs	TCAGCACCCCATC	.	53	19	47	0	.	1032	-	52437456	C	-	52437456	7	5	25	1	0	1	0	1	0	0	0	0	1311	507	18	0	504	0	BAP1	3	52437456	Frame_Shift_Del	DEL	C	TCGA-CC-5260-01A-01D-A12Z-10	13606979	52437456	145584974	15	2898											
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111797619	111797619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMPRSS7	NM_001042575	exon15	c.C1877T	p.A626V	AGCAAGCGGAGGT	.	231	64	218	0	.	70	T	111797619	C	T	111797619	3	4	25	1	0	0	0	0	1	0	0	0	16249	768	27	1	1931	1	TMPRSS7	3	111797619	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	59360163	111797619	86224811	16	2899											
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122629075	122629075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SEMA5B	NM_001256347	exon23	c.C3533T	p.T1178M	GTAGTCGTGTACA	.	704	231	620	0	.	157	A	122629075	G	A	122629075	3	1	25	1	0	0	0	0	1	0	0	0	14038	1145	40	1	88	1	SEMA5B	3	122629075	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	10831456	122629075	75393355	17	2900											
C3orf58	205428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	143704410	143704410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C3orf58	NM_173552	exon2	c.C683T	p.P228L	GTTGGCCATTTGC	.	260	70	233	1	.	91	T	143704410	C	T	143704410	3	4	25	1	0	0	0	0	1	0	0	0	2236	594	21	3	723	3	C3orf58	3	143704410	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	21075335	143704410	54318020	18	2901											
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10446101	10446101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF518B	NM_053042	exon3	c.T1852A	p.L618I	TCTTTAATTCCAA	.	293	77	403	1	.	72	T	10446101	A	T	10446101	3	4	25	1	0	0	0	0	1	0	0	0	17960	98	4	4	1376	4	ZNF518B	4	10446101	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10		10446101	180708175	19	2902											
GPR125	166647	broad.mit.edu;bcgsc.ca	37	4	22389481	22389481	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR125	NM_145290	exon19	c.G3813A	p.V1271V	TTCAACCACAGCT	.	123	6	240	1	.	91	T	22389481	C	T	22389481	2	4	25	1	0	0	0	0	0	0	0	1	6639	581	21	3		3	GPR125	4	22389481	Silent	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	11943380	22389481	168764795	20	2903											
AMTN	401138	hgsc.bcm.edu;broad.mit.edu	37	4	71396955	71396955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AMTN	NM_212557	exon8	c.557delC	p.T186fs	TGACCACCCCTGC	.	202	14	186	0	.	153	-	71396955	C	-	71396955	7	5	25	1	0	1	0	1	0	0	0	0	590	507	18	0	583	0	AMTN	4	71396955	Frame_Shift_Del	DEL	C	TCGA-CC-5260-01A-01D-A12Z-10	49007474	71396955	119757321	21	2904											
GYPA	2993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145039884	145039884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GYPA	NM_002099	exon4	c.A254T	p.H85L	AAATGATGGGCAA	.	370	87	722	0	.	514	A	145039884	T	A	145039884	3	1	25	1	0	0	0	0	1	0	0	0	6908	1464	51	4	214	4	GYPA	4	145039884	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	73642929	145039884	46114392	22	2905											
FAM53C	51307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137681062	137681062	+	Missense_Mutation	SNP	C	C	T	rs145095111		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM53C	NM_001135647	exon4	c.C685T	p.R229C	CCTCAGCGCCGCT	.	49	14	29	0	C|1.000;T|0.000	91	T	137681062	C	T	137681062	3	4	25	1	0	0	0	0	1	0	0	0	5581	768	27	1	695	1	FAM53C	5	137681062	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10		137681062	43234198	23	2906											
PCDHGC5	56097	broad.mit.edu;bcgsc.ca	37	5	140890573	140890573	+	Missense_Mutation	SNP	C	C	T	rs148119281		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDHGC5	NM_018929	exon4	c.C2668T	p.R890C	AGCGCCCGCTACG	.	203	10	136	1	C|1.000;T|0.000	25	T	140890573	C	T	140890573	3	4	25	1	0	0	0	0	1	0	0	0	11571	652	23	1	2857	1	PCDHGC5	5	140890573	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	3209511	140890573	40024687	24	2907											
SERAC1	84947	ucsc.edu;bcgsc.ca	37	6	158535835	158535835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SERAC1	NM_032861	exon15	c.A1670G	p.K557R	AGTTCTTTGACTT	.	46	4	111	0	.	90	C	158535835	T	C	158535835	3	2	25	1	0	0	0	0	1	0	0	0	14074	1841	64	2	306	2	SERAC1	6	158535835	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10		158535835	12579232	25	2908											
TYW1	55253	hgsc.bcm.edu;bcgsc.ca	37	7	66582482	66582482	+	Silent	SNP	G	G	A	rs13221716		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TYW1	NM_018264	exon13	c.G1575A	p.P525P	CGAGCCGGTTACT	.	198	8	186	0	.	91	A	66582482	G	A	66582482	2	1	25	1	0	0	0	0	0	0	0	1	16815	1103	39	1		1	TYW1	7	66582482	Silent	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		66582482	92556181	26	2909											
AASS	10157	broad.mit.edu;bcgsc.ca	37	7	121726206	121726206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AASS	NM_005763	exon19	c.T2044C	p.F682L	CAAGAAAGGAGAT	.	71	4	99	1	.	92	G	121726206	A	G	121726206	3	3	25	1	0	0	0	0	1	0	0	0	24	72	3	2	760	2	AASS	7	121726206	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	55143724	121726206	37412457	27	2910											
KLRG2	346689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139164446	139164446	+	Missense_Mutation	SNP	G	G	A	rs138023732	byfrequency	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KLRG2	NM_198508	exon3	c.C932T	p.A311V	GCCTGCGCTTCTG	.	54	9	35	0	G|1.000;A|0.000	90	A	139164446	G	A	139164446	3	1	25	1	0	0	0	0	1	0	0	0	8422	1087	38	1	309	1	KLRG2	7	139164446	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	17438240	139164446	19974217	28	2911											
CHPF2	54480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150934562	150934562	+	Missense_Mutation	SNP	G	G	A	rs139379425	byfrequency;alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHPF2	NM_019015	exon4	c.G1114A	p.V372M	TTTGAGGTGCTGG	.	236	62	97	0	G|1.000;T|0.000	91	A	150934562	G	A	150934562	3	1	25	1	0	0	0	0	1	0	0	0	3369	1261	44	3	1128	3	CHPF2	7	150934562	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	11770116	150934562	8204101	29	2912											
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	9627614	9627614	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TNKS	NM_003747	exon26	c.3741-2A>T	.	TTCCTTAGACAAA	.	38	21	28	0	.	660	T	9627614	A	T	9627614	5	4	25	1	0	0	0	0	0	0	1	0	16316	434	15	4	3841	4	TNKS	8	9627614	Splice_Site	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10		9627614	136736408	30	2913											
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37756823	37756823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB11FIP1	NM_025151	exon1	c.A137T	p.Q46L	CCCACCTGGATCA	.	79	26	24	0	.	92	A	37756823	T	A	37756823	3	1	25	1	0	0	0	0	1	0	0	0	12893	1580	55	4	3738	4	RAB11FIP1	8	37756823	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	28129209	37756823	108607199	31	2914											
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	89180036	89180036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MMP16	NM_005941	exon4	c.G571A	p.G191S	GGAAACCAGATGC	.	135	33	188	0	.	231	T	89180036	C	T	89180036	3	4	25	1	0	0	0	0	1	0	0	0	9655	594	21	3	1436	3	MMP16	8	89180036	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	51423213	89180036	57183986	32	2915											
RIMS2	9699	ucsc.edu;bcgsc.ca	37	8	104897856	104897856	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIMS2	NM_001100117	exon4	c.A1029G	p.P343P	TTATCCAGTAAAG	.	44	4	130	0	.	279	G	104897856	A	G	104897856	2	3	25	1	0	0	0	0	0	0	0	1	13368	175	7	2		2	RIMS2	8	104897856	Silent	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	15717820	104897856	41466166	33	2916											
KANK1	23189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	738429	738429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KANK1	NM_001256876	exon12	c.G3478A	p.G1160S	GCAGACGGCAACG	.	255	80	219	1	.	517	A	738429	G	A	738429	3	1	25	1	0	0	0	0	1	0	0	0	7976	1116	39	1	3504	1	KANK1	9	738429	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		738429	140475002	34	2917											
TOPORS	10210	ucsc.edu;bcgsc.ca	37	9	32544214	32544214	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TOPORS	NM_005802	exon3	c.T309C	p.C103C	TATAGGACACTTA	.	46	4	40	0	.	230	G	32544214	A	G	32544214	2	3	25	1	0	0	0	0	0	0	0	1	16367	273	10	2		2	TOPORS	9	32544214	Silent	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	31805785	32544214	108669217	35	2918											
FBXO10	26267	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37518350	37518350	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FBXO10	NM_012166	exon9	c.G2286A	p.V762V	CTGGGCCACAGTA	.	331	29	207	1	.	637	T	37518350	C	T	37518350	2	4	25	1	0	0	0	0	0	0	0	1	5726	581	21	3		3	FBXO10	9	37518350	Silent	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	4974136	37518350	103695081	36	2919											
TRPM3	80036	ucsc.edu;bcgsc.ca	37	9	73253992	73253992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TRPM3	NM_001007471	exon11	c.A1565G	p.E522G	AATTCCTCTAGTC	.	45	4	78	0	.	521	C	73253992	T	C	73253992	3	2	25	1	0	0	0	0	1	0	0	0	16584	1551	54	2	3658	2	TRPM3	9	73253992	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	35735642	73253992	67959439	37	2920											
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	75355074	75355074	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMC1	NM_138691	exon9	c.T402A	p.L134L	GGCTCTTGGGAAA	.	275	67	271	0	.	91	A	75355074	T	A	75355074	2	1	25	1	0	0	0	0	0	0	0	1	15981	1799	63	4		4	TMC1	9	75355074	Silent	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	2101082	75355074	65858357	38	2921											
PALM2-AKAP2	445815	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112918686	112918686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PALM2-AKAP2	NM_007203	exon9	c.G3083A	p.G1028E	CTGCCGGAACCCA	.	99	10	119	1	.	475	A	112918686	G	A	112918686	3	1	25	1	0	0	0	0	1	0	0	0	11410	1174	41	3	3117	3	PALM2-AKAP2	9	112918686	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	37563612	112918686	28294745	39	2922											
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123177407	123177407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDK5RAP2	NM_018249	exon28	c.G4208A	p.R1403Q	AAAGTTCGAATTT	.	280	32	209	0	.	229	T	123177407	C	T	123177407	3	4	25	1	0	0	0	0	1	0	0	0	3146	884	31	1	1517	1	CDK5RAP2	9	123177407	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	10258721	123177407	18036024	40	2923											
MAPKAP1	79109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128230302	128230302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAPKAP1	NM_001006617	exon10	c.A1294G	p.I432V	AATCGATTGAGAT	.	394	30	384	0	.	678	C	128230302	T	C	128230302	3	2	25	1	0	0	0	0	1	0	0	0	9288	1493	52	2	286	2	MAPKAP1	9	128230302	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	5052895	128230302	12983129	41	2924											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55839135	55839135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDH15	NM_001142763	exon18	c.C2062T	p.R688C	TGTAGCGATCAGT	.	151	61	264	1	.	193	A	55839135	G	A	55839135	3	1	25	1	0	0	0	0	1	0	0	0	11511	1058	37	1	5507	1	PCDH15	10	55839135	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		55839135	79695612	42	2925											
DMBT1	1755	broad.mit.edu;bcgsc.ca	37	10	124399625	124399625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DMBT1	NM_007329	exon52	c.A6625G	p.R2209G	AAGAGGAGGACAG	.	125	5	152	2	.	494	G	124399625	A	G	124399625	3	3	25	1	0	0	0	0	1	0	0	0	4577	295	11	2	6831	2	DMBT1	10	124399625	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	68560490	124399625	11135122	43	2926											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129901092	129901092	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MKI67	NM_002417	exon13	c.A9012T	p.G3004G	GACGCTTCCATCT	.	73	32	107	0	.	519	A	129901092	T	A	129901092	2	1	25	1	0	0	0	0	0	0	0	1	9598	1770	62	4		4	MKI67	10	129901092	Silent	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	5501467	129901092	5633655	44	2927											
RIC8A	60626	broad.mit.edu;ucsc.edu	37	11	214285	214285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIC8A	NM_021932	exon10	c.C1549T	p.Q517X	TCCCTGCAGGATG	.	138	9	82	0	.	514	T	214285	C	T	214285	4	4	25	1	0	0	0	0	0	1	0	0	13355	711	25	3	1587	3	RIC8A	11	214285	Nonsense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10		214285	134792231	45	2928											
OR8H2	390151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55872687	55872687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR8H2	NM_001005200	exon1	c.C169T	p.H57Y	CAGCTTCACACTC	.	302	33	301	1	.	70	T	55872687	C	T	55872687	3	4	25	1	0	0	0	0	1	0	0	0	11238	826	29	3	171	3	OR8H2	11	55872687	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	55658402	55872687	79133829	46	2929											
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67957441	67957441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SUV420H1	NM_017635	exon2	c.A103T	p.T35S	TCCCCGTGTGCTG	.	462	122	538	0	.	228	A	67957441	T	A	67957441	3	1	25	1	0	0	0	0	1	0	0	0	15411	1696	59	4	2602	4	SUV420H1	11	67957441	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	12084754	67957441	67049075	47	2930											
LRTOMT	220074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71819726	71819726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRTOMT	NM_001145308	exon7	c.C631A	p.L211M	GCAGACCTGGTGC	.	36	9	28	0	.	68	A	71819726	C	A	71819726	3	1	25	1	0	0	0	0	1	0	0	0	9046	680	24	3	1250	3	LRTOMT	11	71819726	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	3862285	71819726	63186790	48	2931											
SLCO2B1	11309	broad.mit.edu;bcgsc.ca	37	11	74904564	74904564	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLCO2B1	NM_007256	exon9	c.G1377A	p.P459P	CCTGCCGCTCTTC	.	211	10	159	0	.	154	A	74904564	G	A	74904564	2	1	25	1	0	0	0	0	0	0	0	1	14727	1074	38	1		1	SLCO2B1	11	74904564	Silent	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	3084838	74904564	60101952	49	2932											
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85712084	85712084	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PICALM	NM_007166	exon10	c.T1011C	p.A337A	CTTTAAAGCTTTC	.	584	158	520	0	.	659	G	85712084	A	G	85712084	2	3	25	1	0	0	0	0	0	0	0	1	11880	59	3	2		2	PICALM	11	85712084	Silent	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	10807520	85712084	49294432	50	2933											
PRMT8	56341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	3702274	3702274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRMT8	NM_019854	exon10	c.G1111A	p.D371N	GACCTCGATTTCA	.	126	15	108	0	.	94	A	3702274	G	A	3702274	3	1	25	1	0	0	0	0	1	0	0	0	12542	1058	37	1	1149	1	PRMT8	12	3702274	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		3702274	130149621	51	2934											
SLC4A8	9498	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	51863457	51863457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC4A8	NM_001039960	exon12	c.A1409C	p.Y470S	GCGACTACCGAGA	.	522	49	548	2	.	95	C	51863457	A	C	51863457	3	2	25	1	0	0	0	0	1	0	0	0	14659	391	14	5	1455	5	SLC4A8	12	51863457	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	48161183	51863457	81988438	52	2935											
ZFC3H1	196441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72057379	72057379	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZFC3H1	NM_144982	exon1	c.A12T	p.A4A	AGTATCTGCGGTC	.	43	10	35	0	.	138	A	72057379	T	A	72057379	2	1	25	1	0	0	0	0	0	0	0	1	17630	1567	55	4		4	ZFC3H1	12	72057379	Silent	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	20193922	72057379	61794516	53	2936											
VPS36	51028	ucsc.edu;bcgsc.ca	37	13	52997746	52997746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VPS36	NM_016075	exon10	c.A803G	p.E268G	TACACCTCCGTGA	.	34	4	73	0	.	91	C	52997746	T	C	52997746	3	2	25	1	0	0	0	0	1	0	0	0	17201	1551	54	2	377	2	VPS36	13	52997746	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10		52997746	62172132	54	2937											
PCDH20	64881	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	61987587	61987587	+	Silent	SNP	C	C	T	rs201107730	alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDH20	NM_022843	exon2	c.G645A	p.S215S	CCACACCGAGATC	.	92	20	107	1	C|0.999;A|0.000	581	T	61987587	C	T	61987587	2	4	25	1	0	0	0	0	0	0	0	1	11515	639	23	1		1	PCDH20	13	61987587	Silent	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	8989841	61987587	53182291	55	2938											
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42110257	42110257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAPKBP1	NM_001128608	exon18	c.1973delA	p.Q658fs	GGTCACAGGGTGA	.	193	45	148	0	.	589	-	42110257	A	-	42110257	7	5	25	1	0	1	0	1	0	0	0	0	9292	188	7	0	2039	0	MAPKBP1	15	42110257	Frame_Shift_Del	DEL	A	TCGA-CC-5260-01A-01D-A12Z-10		42110257	60421135	56	2939											
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79063584	79063584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADAMTS7	NM_014272	exon16	c.G2438A	p.G813D	TGGCCACCTGCCT	.	208	39	142	0	.	226	T	79063584	C	T	79063584	3	4	25	1	0	0	0	0	1	0	0	0	271	507	18	3	2658	3	ADAMTS7	15	79063584	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	36953327	79063584	23467808	57	2940											
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68856129	68856129	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDH1	NM_004360	exon12	c.1936+1G>A	.	ACCCAAGTGGGTA	.	89	17	82	0	.	3377	A	68856129	G	A	68856129	5	1	25	1	0	0	0	0	0	0	1	0	3095	1043	36	3	1983	3	CDH1	16	68856129	Splice_Site	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		68856129	21498624	58	2941											
ATP2C2	9914	broad.mit.edu;bcgsc.ca	37	16	84482138	84482138	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATP2C2	NM_014861	exon17	c.1504-1G>T	.	TTCTAAGGATCAG	.	150	7	127	0	.	91	T	84482138	G	T	84482138	5	4	25	1	0	0	0	0	0	0	1	0	1144	1014	35	3	1569	3	ATP2C2	16	84482138	Splice_Site	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10	15626009	84482138	5872615	59	2942											
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48244792	48244792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SGCA	NM_001135697	exon2	c.G101T	p.R34L	TGGGCCGTGTCTT	.	219	51	130	0	.	92	T	48244792	G	T	48244792	3	4	25	1	0	0	0	0	1	0	0	0	14199	1145	40	1	107	1	SGCA	17	48244792	Missense_Mutation	SNP	G	TCGA-CC-5260-01A-01D-A12Z-10		48244792	32950418	60	2943											
MGAT5B	146664	broad.mit.edu;bcgsc.ca	37	17	74901327	74901327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MGAT5B	NM_198955	exon6	c.A800G	p.K267R	TGAAGAAGCGGAC	.	196	14	141	2	.	93	G	74901327	A	G	74901327	3	3	25	1	0	0	0	0	1	0	0	0	9549	72	3	2	894	2	MGAT5B	17	74901327	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	26656535	74901327	6293883	61	2944											
RAB27B	5874	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	52556472	52556472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB27B	NM_004163	exon6	c.C485A	p.T162K	TTGAAACAAGTGC	.	71	24	134	1	.	227	A	52556472	C	A	52556472	3	1	25	1	0	0	0	0	1	0	0	0	12915	478	17	3	503	3	RAB27B	18	52556472	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10		52556472	25520776	62	2945											
ADAMTS10	81794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8661249	8661249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADAMTS10	NM_030957	exon10	c.G1132A	p.V378I	CATTGACGCTGCA	.	95	24	42	1	.	229	T	8661249	C	T	8661249	3	4	25	1	0	0	0	0	1	0	0	0	256	536	19	1	2247	1	ADAMTS10	19	8661249	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10		8661249	50467734	63	2946											
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9083584	9083584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MUC16	NM_024690	exon1	c.T8231C	p.I2744T	ACTGTGATCGAAC	.	45	4	142	0	.	566	G	9083584	A	G	9083584	3	3	25	1	0	0	0	0	1	0	0	0	9973	333	12	2	35628	2	MUC16	19	9083584	Missense_Mutation	SNP	A	TCGA-CC-5260-01A-01D-A12Z-10	422335	9083584	50045399	64	2947											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38610466	38610466	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SIPA1L3	NM_015073	exon9	c.C2812T	p.L938L	ATCTTCCTACAGG	.	76	31	47	0	.	91	T	38610466	C	T	38610466	2	4	25	1	0	0	0	0	0	0	0	1	14331	680	24	3		3	SIPA1L3	19	38610466	Silent	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10	29526882	38610466	20518517	65	2948											
KRTAP10-11	386678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46066650	46066650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KRTAP10-11	NM_198692	exon1	c.C275G	p.S92C	GCACCTCCTCCCC	.	247	23	191	0	.	91	G	46066650	C	G	46066650	3	3	25	1	0	0	0	0	1	0	0	0	8507	855	30	4	277	4	KRTAP10-11	21	46066650	Missense_Mutation	SNP	C	TCGA-CC-5260-01A-01D-A12Z-10		46066650	2063245	66	2949											
NLGN4X	57502	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5821679	5821679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NLGN4X	NM_181332	exon5	c.A1040G	p.D347G	ATGACGTCGCCGT	.	567	176	413	2	.	195	C	5821679	T	C	5821679	3	2	25	1	0	0	0	0	1	0	0	0	10464	1667	58	2	1418	2	NLGN4X	23	5821679	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10		5821679	149448881	67	2950											
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41586732	41586732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR82	NM_080817	exon3	c.T453A	p.F151L	CAACTTTGCTAGA	.	100	13	182	0	.	110	A	41586732	T	A	41586732	3	1	25	1	0	0	0	0	1	0	0	0	6712	1809	63	4	455	4	GPR82	23	41586732	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	35765053	41586732	113683828	68	2951											
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53409455	53409455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SMC1A	NM_006306	exon21	c.A3257T	p.K1086M	AGGGCCTTATAGA	.	139	37	137	0	.	232	A	53409455	T	A	53409455	3	1	25	1	0	0	0	0	1	0	0	0	14781	1609	56	4	464	4	SMC1A	23	53409455	Missense_Mutation	SNP	T	TCGA-CC-5260-01A-01D-A12Z-10	11822723	53409455	101861105	69	2952											
PRDM2	7799	ucsc.edu;bcgsc.ca	37	1	14109178	14109178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRDM2	NM_015866	exon8	c.A4888G	p.S1630G	TTGGCGAGTAAGA	.	56	6	60	0	.	116	G	14109178	A	G	14109178	3	3	26	1	0	0	0	0	1	0	0	0	12458	304	11	2	4914	2	PRDM2	1	14109178	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10		14109178	235141443	1	2953											
KIF17	57576	ucsc.edu;bcgsc.ca	37	1	21014017	21014017	+	Missense_Mutation	SNP	G	G	A	rs114229809	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon8	c.C1802T	p.P601L	TCCTGCGGCTCCT	.	42	4	47	0	G|0.999;A|0.001	94	A	21014017	G	A	21014017	3	1	26	1	0	0	0	0	1	0	0	0	8279	1116	39	1	1319	1	KIF17	1	21014017	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	6904839	21014017	228236604	2	2954											
HIPK1	204851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114500821	114500821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIPK1	NM_198268	exon8	c.A1889G	p.Q630R	CCCAGCAGGGTGT	.	229	95	229	1	.	361	G	114500821	A	G	114500821	3	3	26	1	0	0	0	0	1	0	0	0	7116	188	7	2	1933	2	HIPK1	1	114500821	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10	93486804	114500821	134749800	3	2955											
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145474788	145474788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD34A	NM_001039888	exon4	c.G1460T	p.S487I	TCCAGAGTCTAGG	.	125	28	35	0	.	68	T	145474788	G	T	145474788	3	4	26	1	0	0	0	0	1	0	0	0	662	1029	36	3	1462	3	ANKRD34A	1	145474788	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	30973967	145474788	103775833	4	2956											
OR10R2	343406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158450031	158450031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10R2	NM_001004472	exon1	c.T364C	p.F122L	CAAATGTTCTTCT	.	657	53	396	0	.	161	C	158450031	T	C	158450031	3	2	26	1	0	0	0	0	1	0	0	0	10917	1725	60	2	366	2	OR10R2	1	158450031	Missense_Mutation	SNP	T	TCGA-CC-5261-01A-01D-A12Z-10	12975243	158450031	90800590	5	2957											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160106761	160106761	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP1A2	NM_000702	exon20	c.A2780T	p.Q927L	TGGTGCAGTGGGC	.	286	52	116	0	.	518	T	160106761	A	T	160106761	3	4	26	1	0	0	0	0	1	0	0	0	1129	188	7	4	2858	4	ATP1A2	1	160106761	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10	1656730	160106761	89143860	6	2958											
RCSD1	92241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167666539	167666539	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RCSD1	NM_052862	exon6	c.G678A	p.E226E	GGGAGAGGGAGTG	.	217	65	106	1	.	517	A	167666539	G	A	167666539	2	1	26	1	0	0	0	0	0	0	0	1	13185	991	35	3		3	RCSD1	1	167666539	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	7559778	167666539	81584082	7	2959											
PAPPA2	60676	broad.mit.edu;bcgsc.ca	37	1	176671815	176671815	+	Silent	SNP	G	G	A	rs114236977		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PAPPA2	NM_020318	exon9	c.G3309A	p.S1103S	AGCTTCGCCTCCT	.	152	10	90	1	G|0.998;A|0.002	548	A	176671815	G	A	176671815	2	1	26	1	0	0	0	0	0	0	0	1	11433	1074	38	1		1	PAPPA2	1	176671815	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	9005276	176671815	72578806	8	2960											
KIF26B	55083	hgsc.bcm.edu;bcgsc.ca	37	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	GTCCGCGCGAAGT	.	172	8	76	0	.	25	A	245862258	G	A	245862258	3	1	26	1	0	0	0	0	1	0	0	0	8295	1087	38	1	6151	1	KIF26B	1	245862258	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	69190443	245862258	3388363	9	2961											
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96952176	96952176	+	Silent	SNP	C	C	T	rs115923152	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNRNP200	NM_014014	exon29	c.G3876A	p.P1292P	CTTCTCCGGCAAG	.	54	11	33	0	C|0.995;T|0.005	162	T	96952176	C	T	96952176	2	4	26	1	0	0	0	0	0	0	0	1	14852	639	23	1		1	SNRNP200	2	96952176	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		96952176	146247197	10	2962											
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128075798	128075798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAP3K2	NM_006609	exon12	c.G1141T	p.E381X	CCAATTCTCTTCC	.	114	13	118	0	.	1403	A	128075798	C	A	128075798	4	1	26	1	0	0	0	0	0	1	0	0	9250	922	32	3	738	3	MAP3K2	2	128075798	Nonsense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	31123622	128075798	115123575	11	2963											
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209190043	209190043	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIKFYVE	NM_015040	exon20	c.C2508T	p.G836G	CCTAGGCTGTACA	.	158	23	153	0	.	583	T	209190043	C	T	209190043	2	4	26	1	0	0	0	0	0	0	0	1	11924	784	28	3		3	PIKFYVE	2	209190043	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	81114245	209190043	34009330	12	2964											
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	217012796	217012805	+	Splice_Site	DEL	TTTCCAACAG	TTTCCAACAG	-	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TTTCCAACAG	TTTCCAACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XRCC5	.	.	.	.	TTACTTTTTCCAA	.	289	22	306	0	.	970	-	217012805	TTTCCAACAG	-	217012796	8	5	26	1	0	1	0	1	0	0	1	0	17453	1856	64	0		0	XRCC5	2	217012796	Splice_Site	DEL	TTTCCAACAG	TCGA-CC-5261-01A-01D-A12Z-10	7822753	217012796	26186577	13	2965											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238249681	238249681	+	Silent	SNP	G	G	A	rs145136426	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL6A3	NM_004369	exon38	c.C7878T	p.S2626S	CTCAGCGCTGTCT	.	196	36	189	0	G|1.000;A|0.000	526	A	238249681	G	A	238249681	2	1	26	1	0	0	0	0	0	0	0	1	3701	1078	38	1		1	COL6A3	2	238249681	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	21236885	238249681	4949692	14	2966											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38150949	38150949	+	Silent	SNP	T	T	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLEC1	NM_007337	exon22	c.T3156A	p.P1052P	CCTCCCTTGTCAC	.	78	11	65	0	.	161	A	38150949	T	A	38150949	2	1	26	1	0	0	0	0	0	0	0	1	4552	1596	56	4		4	DLEC1	3	38150949	Silent	SNP	T	TCGA-CC-5261-01A-01D-A12Z-10		38150949	159871481	15	2967											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77607249	77607250	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	p.DP462ES	TAGAGATCCAAGA	.	166	65	114	0	.	.	AT	77607250	TC	AT	77607249	3	1	26	1	0	0	0	0	1	0	0	0	13514	1432	50	4	1422	4	ROBO2	3	77607249	Missense_Mutation	DNP	TC	TCGA-CC-5261-01A-01D-A12Z-10	39456300	77607249	120415181	16	2968											
COL8A1	1295	ucsc.edu;bcgsc.ca	37	3	99514182	99514182	+	Silent	SNP	C	C	T	rs61753448	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL8A1	NM_001850	exon5	c.C1437T	p.L479L	GCTTCTCGGACCT	.	31	6	32	0	C|0.996;T|0.004	90	T	99514182	C	T	99514182	2	4	26	1	0	0	0	0	0	0	0	1	3705	871	31	1		1	COL8A1	3	99514182	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	21906933	99514182	98508248	17	2969											
GTPBP8	29083	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	112711969	112711969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTPBP8	NM_014170	exon2	c.C433A	p.P145T	AAAAAACCAGTAT	.	284	17	360	0	.	90	A	112711969	C	A	112711969	3	1	26	1	0	0	0	0	1	0	0	0	6884	507	18	3	439	3	GTPBP8	3	112711969	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	13197787	112711969	85310461	18	2970											
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	8605903	8605903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPZ	NM_001014447	exon4	c.C697T	p.Q233X	CCCGGCCAGCACG	.	88	46	55	0	.	93	T	8605903	C	T	8605903	4	4	26	1	0	0	0	0	0	1	0	0	3839	595	21	3	711	3	CPZ	4	8605903	Nonsense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		8605903	182548373	19	2971											
PTPN13	5783	ucsc.edu;bcgsc.ca	37	4	87695667	87695667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPN13	NM_080685	exon33	c.G5506A	p.G1836R	AAACCTGGGGACC	.	45	4	56	0	.	230	A	87695667	G	A	87695667	3	1	26	1	0	0	0	0	1	0	0	0	12782	1348	47	3	5632	3	PTPN13	4	87695667	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	79089764	87695667	103458609	20	2972											
GPR98	84059	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	90079720	90079720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR98	NM_032119	exon67	c.A13499C	p.H4500P	GGCGCCACCTAGT	.	116	27	92	1	.	103	C	90079720	A	C	90079720	3	2	26	1	0	0	0	0	1	0	0	0	6721	159	6	5	13765	5	GPR98	5	90079720	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10		90079720	90835540	21	2973											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	127873149	127873149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBN2	NM_001999	exon1	c.G148T	p.A50S	CTGTAGCGGACCG	.	51	16	17	0	.	146	A	127873149	C	A	127873149	3	1	26	1	0	0	0	0	1	0	0	0	5703	768	27	1	8850	1	FBN2	5	127873149	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	37793429	127873149	53042111	22	2974											
SH3RF2	153769	hgsc.bcm.edu;bcgsc.ca	37	5	145393600	145393600	+	Silent	SNP	C	C	T	rs35761990	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3RF2	NM_152550	exon5	c.C1035T	p.D345D	AGCAGACGTTCCT	.	84	5	88	0	C|0.990;T|0.010	92	T	145393600	C	T	145393600	2	4	26	1	0	0	0	0	0	0	0	1	14259	535	19	1		1	SH3RF2	5	145393600	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	17520451	145393600	35521660	23	2975											
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148407322	148407322	+	Missense_Mutation	SNP	C	C	T	rs138040787		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3TC2	NM_024577	exon11	c.G1973A	p.R658H	TGCAGGCGCTCGG	.	60	14	46	0	C|1.000;T|0.000	92	T	148407322	C	T	148407322	3	4	26	1	0	0	0	0	1	0	0	0	14262	768	27	1	1921	1	SH3TC2	5	148407322	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	3013722	148407322	32507938	24	2976											
GCNT2	2651	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10529561	10529561	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GCNT2	NM_145649	exon3	c.A417G	p.A139A	AGGTGCAGTGAAA	.	111	40	69	1	.	92	G	10529561	A	G	10529561	2	3	26	1	0	0	0	0	0	0	0	1	6301	175	7	2		2	GCNT2	6	10529561	Silent	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10		10529561	160585506	25	2977											
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27218849	27218849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS16	NM_005865	exon6	c.C620T	p.A207V	CGGTCGCCTCCTC	.	115	26	69	0	.	94	T	27218849	C	T	27218849	3	4	26	1	0	0	0	0	1	0	0	0	12616	739	26	3	642	3	PRSS16	6	27218849	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	16689288	27218849	143896218	26	2978											
ALDH8A1	64577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135265052	135265052	+	Missense_Mutation	SNP	C	C	T	rs200812012		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALDH8A1	NM_022568	exon2	c.G191A	p.R64H	GGGCTGCGGGATG	.	41	27	33	0	.	94	T	135265052	C	T	135265052	3	4	26	1	0	0	0	0	1	0	0	0	505	768	27	1	1296	1	ALDH8A1	6	135265052	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	108046203	135265052	35850015	27	2979											
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142396836	142396836	+	Silent	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NMBR	NM_002511	exon3	c.C1122G	p.T374T	AGAATTGGTCACC	.	169	46	168	0	.	946	C	142396836	G	C	142396836	2	2	26	1	0	0	0	0	0	0	0	1	10487	1335	47	4		4	NMBR	6	142396836	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	7131784	142396836	28718231	28	2980											
IGF2R	3482	ucsc.edu;bcgsc.ca	37	6	160471532	160471532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IGF2R	NM_000876	exon19	c.A2542G	p.S848G	TCCATCAGTAACT	.	54	5	53	0	.	118	G	160471532	A	G	160471532	3	3	26	1	0	0	0	0	1	0	0	0	7576	188	7	2	2616	2	IGF2R	6	160471532	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10	18074696	160471532	10643535	29	2981											
T	6862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166579327	166579327	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	T	NM_003181	exon4	c.T473A	p.I158N	AGCATGATCTGAG	.	93	13	101	1	.	516	T	166579327	A	T	166579327	3	4	26	1	0	0	0	0	1	0	0	0	15485	347	12	4	858	4	T	6	166579327	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10	6107795	166579327	4535740	30	2982											
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2317903	2317903	+	Silent	SNP	G	G	A	rs78286162		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNX8	NM_013321	exon2	c.C132T	p.I44I	CTGCACGATGGCC	.	86	11	62	0	G|0.999;A|0.001	290	A	2317903	G	A	2317903	2	1	26	1	0	0	0	0	0	0	0	1	14908	1048	37	1		1	SNX8	7	2317903	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		2317903	156820760	31	2983											
BAZ1B	9031	hgsc.bcm.edu;bcgsc.ca	37	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	TGATGATCTAGGT	.	214	12	269	0	.	159	C	72903721	T	C	72903721	3	2	26	1	0	0	0	0	1	0	0	0	1330	1449	50	2	3813	2	BAZ1B	7	72903721	Missense_Mutation	SNP	T	TCGA-CC-5261-01A-01D-A12Z-10	70585818	72903721	86234942	32	2984											
GTF2IRD1	9569	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	73932488	73932488	+	Silent	SNP	C	C	G	rs112098981	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTF2IRD1	NM_001199207	exon5	c.C537G	p.A179A	AAGGGCCAGTGTG	.	91	9	74	0	C|0.996;G|0.004	94	G	73932488	C	G	73932488	2	3	26	1	0	0	0	0	0	0	0	1	6868	581	21	4		4	GTF2IRD1	7	73932488	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	1028767	73932488	85206175	33	2985											
CCDC146	57639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	76922297	76922297	+	Missense_Mutation	SNP	A	A	C	rs77337116	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC146	NM_020879	exon18	c.A2444C	p.N815T	TCAAAAATGCAAC	.	41	5	50	0	A|0.998;C|0.002	70	C	76922297	A	C	76922297	3	2	26	1	0	0	0	0	1	0	0	0	2780	101	4	5	2510	5	CCDC146	7	76922297	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10	2989809	76922297	82216366	34	2986											
C7orf43	55262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99752913	99752913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C7orf43	NM_018275	exon10	c.C1561A	p.Q521K	GCTGCTGGTGGGA	.	31	8	29	0	.	90	T	99752913	G	T	99752913	3	4	26	1	0	0	0	0	1	0	0	0	2393	1357	47	3	189	3	C7orf43	7	99752913	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	22830616	99752913	59385750	35	2987											
PSMC2	5701	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	102988209	102988209	+	Silent	SNP	G	G	A	rs61729405	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSMC2	NM_001204453	exon1	c.G51A	p.K17K	TGAGAAGGACGAC	.	73	7	78	0	G|0.994;A|0.006	90	A	102988209	G	A	102988209	2	1	26	1	0	0	0	0	0	0	0	1	12686	991	35	3		3	PSMC2	7	102988209	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	3235296	102988209	56150454	36	2988											
RELN	5649	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	103130238	103130238	+	Silent	SNP	G	G	A	rs78218774	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RELN	NM_173054	exon60	c.C9714T	p.H3238H	GTATCCGTGCCCG	.	64	8	55	0	G|0.988;A|0.012	574	A	103130238	G	A	103130238	2	1	26	1	0	0	0	0	0	0	0	1	13220	1136	40	1		1	RELN	7	103130238	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	142029	103130238	56008425	37	2989											
OR9A4	130075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141618875	141618875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR9A4	NM_001001656	exon1	c.C200T	p.A67V	TCTCTGCCCTGGA	.	199	44	205	1	.	91	T	141618875	C	T	141618875	3	4	26	1	0	0	0	0	1	0	0	0	11249	739	26	3	202	3	OR9A4	7	141618875	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	38488637	141618875	17519788	38	2990											
ZNF777	27153	ucsc.edu;bcgsc.ca	37	7	149152828	149152828	+	Missense_Mutation	SNP	G	G	C	rs76797088	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF777	NM_015694	exon2	c.C286G	p.P96A	CCAGGGGGCCCTG	.	55	8	50	1	G|0.987;C|0.013	136	C	149152828	G	C	149152828	3	2	26	1	0	0	0	0	1	0	0	0	18147	1232	43	4	2229	4	ZNF777	7	149152828	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	7533953	149152828	9985835	39	2991											
GALNTL5	168391	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	CTGTCAGCTTGGT	.	203	12	264	0	.	92	A	151664464	G	A	151664464	3	1	26	1	0	0	0	0	1	0	0	0	6224	971	34	3	135	3	GALNTL5	7	151664464	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	2511636	151664464	7474199	40	2992											
C8orf22	492307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	49985398	49985398	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001256598	exon2	c.C9T	p.S3S	GGCATCCGTACCT	.	158	40	190	0	.	.	T	49985398	C	T	49985398	2	4	26	1	0	0	0	0	0	0	0	1	2419	639	23	1		1	C8orf22	8	49985398	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		49985398	96378624	41	2993											
C8orf34	116328	hgsc.bcm.edu;bcgsc.ca	37	8	69434170	69434170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C8orf34	NM_052958	exon6	c.G902T	p.W301L	ACCAATGGGAAAG	.	95	7	128	0	.	153	T	69434170	G	T	69434170	3	4	26	1	0	0	0	0	1	0	0	0	2422	1357	47	3	587	3	C8orf34	8	69434170	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	19448772	69434170	76929852	42	2994											
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110131528	110131528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRHR	NM_003301	exon2	c.C1041G	p.N347K	TGCTAACTACAGT	.	222	27	163	0	.	620	G	110131528	C	G	110131528	3	3	26	1	0	0	0	0	1	0	0	0	16477	564	20	4	1047	4	TRHR	8	110131528	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	40697358	110131528	36232494	43	2995											
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143994118	143994118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP11B2	NM_000498	exon8	c.C1226T	p.S409L	CCCAGCGAGTAGA	.	106	15	92	0	.	90	A	143994118	G	A	143994118	3	1	26	1	0	0	0	0	1	0	0	0	4146	1059	37	1	293	1	CYP11B2	8	143994118	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	33862590	143994118	2369904	44	2996											
TBC1D2	55357	hgsc.bcm.edu;bcgsc.ca	37	9	100991356	100991356	+	Missense_Mutation	SNP	G	G	A	rs139062706		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TBC1D2	NM_001267571	exon5	c.C856T	p.R286C	TCTGGCGCTTGGC	.	196	8	216	0	G|0.999;A|0.001	93	A	100991356	G	A	100991356	3	1	26	1	0	0	0	0	1	0	0	0	15605	1087	38	1	1933	1	TBC1D2	9	100991356	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		100991356	40222075	45	2997											
USP20	10868	broad.mit.edu;bcgsc.ca	37	9	132636968	132636968	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	USP20	NM_001008563	exon18	c.G1854A	p.K618K	TGCCAAGGAGTGC	.	63	6	54	0	.	658	A	132636968	G	A	132636968	2	1	26	1	0	0	0	0	0	0	0	1	17049	991	35	3		3	USP20	9	132636968	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	31645612	132636968	8576463	46	2998											
TACC2	10579	ucsc.edu;bcgsc.ca	37	10	123845611	123845611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACC2	NM_206862	exon4	c.A3596G	p.E1199G	CCAGAGAGCTGGG	.	41	4	30	0	.	296	G	123845611	A	G	123845611	3	3	26	1	0	0	0	0	1	0	0	0	15499	304	11	2	3606	2	TACC2	10	123845611	Missense_Mutation	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10		123845611	11689136	47	2999											
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	125639753	125639753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPXM2	NM_198148	exon2	c.G377T	p.R126L	GCCACACGGACAC	.	203	61	207	0	.	92	A	125639753	C	A	125639753	3	1	26	1	0	0	0	0	1	0	0	0	3838	536	19	1	1945	1	CPXM2	10	125639753	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	1794142	125639753	9894994	48	3000											
CALY	50632	ucsc.edu;bcgsc.ca	37	10	135140403	135140403	+	Silent	SNP	G	G	A	rs142159746	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CALY	NM_015722	exon4	c.C339T	p.C113C	GTCGGGGCAGGTG	.	93	10	70	2	G|0.994;A|0.006	68	A	135140403	G	A	135140403	2	1	26	1	0	0	0	0	0	0	0	1	2595	1195	42	3		3	CALY	10	135140403	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	9500650	135140403	394344	49	3001											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1472640	1472640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BRSK2	NM_001256630	exon15	c.C1673T	p.S558L	CAGAGTCGTCCCC	.	50	20	43	0	.	333	T	1472640	C	T	1472640	3	4	26	1	0	0	0	0	1	0	0	0	1524	893	31	1	1593	1	BRSK2	11	1472640	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		1472640	133533876	50	3002											
SPON1	10418	broad.mit.edu;mdanderson.org	37	11	14282206	14282206	+	RNA	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPON1	.	.	.	.	GCATGCGAACCCG	.	119	11	105	1	.	1	A	14282206	G	A	14282206	1	1	26	0	1	0	0	0	0	0	0	0	15081	1058	37	1		1	SPON1	11	14282206	RNA	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	12809566	14282206	120724310	51	3003											
PIK3C2G	5288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18439830	18439830	+	Missense_Mutation	SNP	C	C	T	rs186647102	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIK3C2G	NM_004570	exon3	c.C728T	p.T243M	GCAATACGAGTCT	.	386	41	362	0	C|0.999;T|0.000	1312	T	18439830	C	T	18439830	3	4	26	1	0	0	0	0	1	0	0	0	11911	536	19	1	734	1	PIK3C2G	12	18439830	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		18439830	115412065	52	3004											
KRT83	3889	hgsc.bcm.edu;bcgsc.ca	37	12	52708547	52708547	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT83	NM_002282	exon9	c.C1350T	p.S450S	CGGCCGGGAGCCC	.	111	10	87	0	.	91	A	52708547	G	A	52708547	2	1	26	1	0	0	0	0	0	0	0	1	8497	1219	43	3		3	KRT83	12	52708547	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	34268717	52708547	81143348	53	3005											
SP1	6667	ucsc.edu;bcgsc.ca	37	12	53805020	53805020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SP1	NM_138473	exon6	c.T2354C	p.F785S	ATGGCTTCTGAGA	.	36	4	30	0	.	228	C	53805020	T	C	53805020	3	2	26	1	0	0	0	0	1	0	0	0	14959	1783	62	2	2376	2	SP1	12	53805020	Missense_Mutation	SNP	T	TCGA-CC-5261-01A-01D-A12Z-10	1096473	53805020	80046875	54	3006											
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109972536	109972536	+	Silent	SNP	C	C	T	rs61999293	bycluster;byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBE3B	NM_130466	exon28	c.C3156T	p.R1052R	CCTCCGCGAGAAG	.	94	18	58	0	C|0.998;T|0.002	660	T	109972536	C	T	109972536	2	4	26	1	0	0	0	0	0	0	0	1	16877	755	27	1		1	UBE3B	12	109972536	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	56167516	109972536	23879359	55	3007											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36046548	36046548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NBEA	NM_015678	exon41	c.C6460T	p.L2154F	GTGGTTCTCAGCA	.	32	12	22	0	.	144	T	36046548	C	T	36046548	3	4	26	1	0	0	0	0	1	0	0	0	10187	913	32	3	6622	3	NBEA	13	36046548	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		36046548	79123330	56	3008											
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75131540	75131540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0317	NM_001039479	exon18	c.A2192G	p.K731R	TTTACCTTTTCTC	.	43	4	62	0	.	525	C	75131540	T	C	75131540	3	2	26	1	0	0	0	0	1	0	0	0	8167	1623	56	2	291	2	KIAA0317	14	75131540	Missense_Mutation	SNP	T	TCGA-CC-5261-01A-01D-A12Z-10		75131540	32218000	57	3009											
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42492106	42492106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VPS39	NM_015289	exon2	c.C127T	p.R43W	CCTTCCGAATCCT	.	162	29	180	0	.	229	A	42492106	G	A	42492106	3	1	26	1	0	0	0	0	1	0	0	0	17206	1057	37	1	2596	1	VPS39	15	42492106	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		42492106	60039286	58	3010											
NOX5	79400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69348934	69348934	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOX5	NM_024505	exon16	c.G2196A	p.K732K	GAAGAAGGGCAAG	.	111	17	74	1	.	136	A	69348934	G	A	69348934	2	1	26	1	0	0	0	0	0	0	0	1	10559	991	35	3		3	NOX5	15	69348934	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	26856828	69348934	33182458	59	3011											
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79069906	79069906	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS7	NM_014272	exon9	c.C1347T	p.D449D	AGGGTCGTCCAGG	.	61	17	55	0	.	226	A	79069906	G	A	79069906	2	1	26	1	0	0	0	0	0	0	0	1	271	1136	40	1		1	ADAMTS7	15	79069906	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	9720972	79069906	23461486	60	3012											
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4945711	4945711	+	Missense_Mutation	SNP	C	C	T	rs74003551	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPL	NM_002705	exon10	c.G979A	p.E327K	CGTCTTCGTGAAA	.	62	6	75	0	C|0.997;T|0.003	95	T	4945711	C	T	4945711	3	4	26	1	0	0	0	0	1	0	0	0	12334	893	31	1	4343	1	PPL	16	4945711	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		4945711	85409042	61	3013											
SLC5A11	115584	hgsc.bcm.edu;bcgsc.ca	37	16	24888677	24888677	+	Silent	SNP	G	G	A	rs9932619	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC5A11	NM_052944	exon7	c.G576A	p.T192T	ATACACGGTTGCT	.	133	10	143	0	G|0.962;A|0.038	92	A	24888677	G	A	24888677	2	1	26	1	0	0	0	0	0	0	0	1	14663	1103	39	1		1	SLC5A11	16	24888677	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	19942966	24888677	65466076	62	3014											
CD2BP2	10421	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	30365266	30365266	+	Missense_Mutation	SNP	G	G	A	rs149209324	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD2BP2	NM_006110	exon4	c.C331T	p.R111W	CATCCCGGTTCAG	.	58	6	46	0	G|0.999;A|0.001	91	A	30365266	G	A	30365266	3	1	26	1	0	0	0	0	1	0	0	0	2995	1115	39	1	710	1	CD2BP2	16	30365266	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	5476589	30365266	59989487	63	3015											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350737	89350737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD11	NM_001256183	exon9	c.G2213A	p.R738H	TTCGAACGGTCTT	.	426	206	578	0	.	139	T	89350737	C	T	89350737	3	4	26	1	0	0	0	0	1	0	0	0	639	536	19	1	5798	1	ANKRD11	16	89350737	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	58985471	89350737	1004016	64	3016											
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	973210	973210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.G1015C	p.G339R	CTCACCCTGCAGA	.	94	35	69	0	.	91	G	973210	C	G	973210	3	3	26	1	0	0	0	0	1	0	0	0	99	695	24	4	1624	4	ABR	17	973210	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10		973210	80222000	65	3017	22	2									
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	973214	973214	+	Silent	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.T1011A	p.S337S	CCCTGCAGAGGTC	.	101	41	70	0	.	91	T	973214	A	T	973214	2	4	26	1	0	0	0	0	0	0	0	1	99	175	7	4		4	ABR	17	973214	Silent	SNP	A	TCGA-CC-5261-01A-01D-A12Z-10	4	973214	80221996	66	3018	22	2									
KCNJ2	3759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	68172290	68172290	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNJ2	NM_000891	exon2	c.T1110C	p.N370N	CTCAAATGCAAAT	.	144	14	93	0	.	90	C	68172290	T	C	68172290	2	2	26	1	0	0	0	0	0	0	0	1	8051	1461	51	2		2	KCNJ2	17	68172290	Silent	SNP	T	TCGA-CC-5261-01A-01D-A12Z-10	67199076	68172290	13022920	67	3019											
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20562244	20562244	+	Silent	SNP	G	G	A	rs149495397	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RBBP8	NM_203292	exon7	c.G492A	p.P164P	TTCACCGATAACA	.	139	8	159	0	G|0.999;A|0.001	659	A	20562244	G	A	20562244	2	1	26	1	0	0	0	0	0	0	0	1	13105	1045	37	1		1	RBBP8	18	20562244	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		20562244	57515004	68	3020											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23807168	23807168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAF4B	NM_005640	exon1	c.C271T	p.P91S	CCTGCTCCTCAGA	.	200	33	155	0	.	71	T	23807168	C	T	23807168	3	4	26	1	0	0	0	0	1	0	0	0	15524	855	30	3	273	3	TAF4B	18	23807168	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	3244924	23807168	54270080	69	3021											
PLIN4	729359	hgsc.bcm.edu;bcgsc.ca	37	19	4517618	4517618	+	Silent	SNP	G	G	A	rs7250771		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLIN4	NM_001080400	exon1	c.C99T	p.A33A	GTCAGCGGCCGGC	.	101	7	47	0	G|0.991;A|0.009	68	A	4517618	G	A	4517618	2	1	26	1	0	0	0	0	0	0	0	1	12092	1103	39	1		1	PLIN4	19	4517618	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		4517618	54611365	70	3022											
ZNF8	7554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58806191	58806191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF8	NM_021089	exon4	c.G1017T	p.K339N	GGAGAAGCCCTAT	.	100	11	82	1	.	91	T	58806191	G	T	58806191	3	4	26	1	0	0	0	0	1	0	0	0	18164	962	34	3	1031	3	ZNF8	19	58806191	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	54288573	58806191	322792	71	3023											
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36999419	36999419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LBP	NM_004139	exon11	c.G1187A	p.S396N	ATACCAGCAAGAT	.	233	22	135	0	.	91	A	36999419	G	A	36999419	3	1	26	1	0	0	0	0	1	0	0	0	8651	971	34	3	1229	3	LBP	20	36999419	Missense_Mutation	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		36999419	26026101	72	3024											
TBX1	6899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	19751756	19751756	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	TBX1,NS,carcinoma,+1	TBX1	NM_080647	exon5	c.G591A	p.P197P	CCACCCGGACTCG	.	69	22	47	0	.	154	A	19751756	G	A	19751756	2	1	26	1	0	0	0	0	0	0	0	1	15647	1103	39	1		1	TBX1	22	19751756	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		19751756	31552810	73	3025											
DGCR6L	85359	hgsc.bcm.edu;bcgsc.ca	37	22	20302911	20302911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DGCR6L	NM_033257	exon4	c.G461A	p.S154N	AGTGTGCTCTGCT	.	134	10	91	0	.	90	T	20302911	C	T	20302911	3	4	26	1	0	0	0	0	1	0	0	0	4463	797	28	3	209	3	DGCR6L	22	20302911	Missense_Mutation	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	551155	20302911	31001655	74	3026											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24741360	24741360	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	POLA1	NM_016937	exon11	c.G1158A	p.T386T	GCGAACGCTTTAC	.	194	131	175	1	.	229	A	24741360	G	A	24741360	2	1	26	1	0	0	0	0	0	0	0	1	12187	1074	38	1		1	POLA1	23	24741360	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10		24741360	130529200	75	3027											
DUSP21	63904	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	44703615	44703615	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DUSP21	NM_022076	exon1	c.G237A	p.S79S	TGACTCGCGTCTC	.	127	97	83	1	.	289	A	44703615	G	A	44703615	2	1	26	1	0	0	0	0	0	0	0	1	4820	1074	38	1		1	DUSP21	23	44703615	Silent	SNP	G	TCGA-CC-5261-01A-01D-A12Z-10	19962255	44703615	110566945	76	3028											
ELK1	2002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47496430	47496430	+	Silent	SNP	C	C	T	rs143440705		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ELK1	NM_001114123	exon6	c.G1170A	p.P390P	CTTGGCCGGGCTA	.	122	15	91	0	C|1.000;T|0.000	660	T	47496430	C	T	47496430	2	4	26	1	0	0	0	0	0	0	0	1	5059	639	23	1		1	ELK1	23	47496430	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	2792815	47496430	107774130	77	3029											
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135593320	135593320	+	Silent	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HTATSF1	NM_001163280	exon10	c.C1416G	p.P472P	CTGCCCCAAAAGA	.	72	14	66	0	.	132	G	135593320	C	G	135593320	2	3	26	1	0	0	0	0	0	0	0	1	7433	581	21	4		4	HTATSF1	23	135593320	Silent	SNP	C	TCGA-CC-5261-01A-01D-A12Z-10	88096890	135593320	19677240	78	3030											
PRDM2	7799	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14075887	14075887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRDM2	NM_015866	exon6	c.G416T	p.W139L	TGGTCTGGTACAA	.	64	12	54	1	.	116	T	14075887	G	T	14075887	3	4	27	1	0	0	0	0	1	0	0	0	12458	1357	47	3	434	3	PRDM2	1	14075887	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10		14075887	235174734	1	3031											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19166175	19166175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TAS1R2	NM_152232	exon6	c.A2438G	p.Y813C	ATCATGTAGCACT	.	266	29	259	0	.	93	C	19166175	T	C	19166175	3	2	27	1	0	0	0	0	1	0	0	0	15560	1638	57	2	85	2	TAS1R2	1	19166175	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	5090288	19166175	230084446	2	3032											
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22222416	22222416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HSPG2	NM_005529	exon3	c.G243A	p.M81I	CTTACCCATCTGG	.	94	18	108	0	.	141	T	22222416	C	T	22222416	3	4	27	1	0	0	0	0	1	0	0	0	7430	608	21	3	13312	3	HSPG2	1	22222416	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	3056241	22222416	227028205	3	3033											
C1orf213	148898	ucsc.edu;mdanderson.org	37	1	23697598	23697598	+	RNA	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C1orf213	.	.	.	.	AGCCCTTCTTTGT	.	588	98	526	1	.	68	A	23697598	T	A	23697598	1	1	27	0	1	0	0	0	0	0	0	0	2030	1798	62	4		4	C1orf213	1	23697598	RNA	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	1475182	23697598	225553023	4	3034											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27099008	27099008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARID1A	NM_006015	exon13	c.C3424T	p.Q1142X	TCTATGCAGGGGC	.	248	45	207	0	.	584	T	27099008	C	T	27099008	4	4	27	1	0	0	0	0	0	1	0	0	913	711	25	3	3474	3	ARID1A	1	27099008	Nonsense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	3401410	27099008	222151613	5	3035											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34003089	34003089	+	Missense_Mutation	SNP	C	C	T	rs149230645		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSMD2	NM_052896	exon60	c.G9320A	p.R3107H	AACCTGCGTGGAG	.	106	25	90	0	C|1.000;T|0.000	103	T	34003089	C	T	34003089	3	4	27	1	0	0	0	0	1	0	0	0	3945	768	27	1	1183	1	CSMD2	1	34003089	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	6904081	34003089	215247532	6	3036	23	2									
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34003090	34003090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSMD2	NM_052896	exon60	c.C9319A	p.R3107S	ACCTGCGTGGAGA	.	105	24	91	1	.	103	T	34003090	G	T	34003090	3	4	27	1	0	0	0	0	1	0	0	0	3945	1145	40	1	1184	1	CSMD2	1	34003090	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	1	34003090	215247531	7	3037	23	2									
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	38034740	38034740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GNL2	NM_013285	exon13	c.C1580A	p.T527K	ACTCGTGTGAGAA	.	369	15	344	0	.	91	T	38034740	G	T	38034740	3	4	27	1	0	0	0	0	1	0	0	0	6536	1377	48	3	631	3	GNL2	1	38034740	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	4031650	38034740	211215881	8	3038											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44069658	44069658	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PTPRF	NM_002840	exon16	c.C2835T	p.N945N	GAGGAACGGGCGC	.	119	28	117	0	.	232	T	44069658	C	T	44069658	2	4	27	1	0	0	0	0	0	0	0	1	12801	535	19	1		1	PTPRF	1	44069658	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	6034918	44069658	205180963	9	3039											
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45810698	45810699	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TESK2	NM_007170	exon11	c.1530_1531insCA	p.H510fs	AGCCTCATGGGCT	.	151	21	148	0	.	624	TG	45810699	-	TG	45810698	7	5	27	1	0	1	1	0	0	0	0	0	15765	214	8	0	189	0	TESK2	1	45810698	Frame_Shift_Ins	INS	-	TCGA-CC-5262-01A-01D-A12Z-10	1741040	45810698	203439923	10	3040											
SH3GLB1	51100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	87189994	87189994	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SH3GLB1	NM_001206653	exon4	c.178-2A>G	.	ATTTATAGAAAGA	.	452	93	254	0	.	90	G	87189994	A	G	87189994	5	3	27	1	0	0	0	0	0	0	1	0	14253	434	15	2	494	2	SH3GLB1	1	87189994	Splice_Site	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	41379296	87189994	162060627	11	3041											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517119	158517119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR6Y1	NM_001005189	exon1	c.G777T	p.M259I	AAGTGTCATGGAA	.	184	32	146	0	.	69	A	158517119	C	A	158517119	3	1	27	1	0	0	0	0	1	0	0	0	11213	826	29	3	202	3	OR6Y1	1	158517119	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	71327125	158517119	90733502	12	3042											
OR10Z1	128368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576423	158576423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR10Z1	NM_001004478	exon1	c.C195A	p.F65L	TTCCTTCCTATCC	.	522	86	443	1	.	70	A	158576423	C	A	158576423	3	1	27	1	0	0	0	0	1	0	0	0	10923	854	30	3	197	3	OR10Z1	1	158576423	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	59304	158576423	90674198	13	3043											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu	37	1	160104352	160104352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1A2	NM_000702	exon14	c.G1906T	p.E636X	GGTAACGAGACTG	.	223	11	196	0	.	518	T	160104352	G	T	160104352	4	4	27	1	0	0	0	0	0	1	0	0	1129	1059	37	1	1960	1	ATP1A2	1	160104352	Nonsense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	1527929	160104352	89146269	14	3044											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177250229	177250229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM5B	NM_021165	exon8	c.T1917A	p.F639L	TTTCTTTGAGACA	.	259	41	177	0	.	28	A	177250229	T	A	177250229	3	1	27	1	0	0	0	0	1	0	0	0	5593	1809	63	4	1943	4	FAM5B	1	177250229	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	17145877	177250229	72000392	15	3045											
SERTAD4	56256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210415122	210415122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SERTAD4	NM_019605	exon4	c.C511G	p.P171A	GACTGCCCTTACC	.	200	30	138	0	.	92	G	210415122	C	G	210415122	3	3	27	1	0	0	0	0	1	0	0	0	14123	623	22	4	521	4	SERTAD4	1	210415122	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	33164893	210415122	38835499	16	3046											
SMYD2	56950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214501025	214501025	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMYD2	NM_020197	exon7	c.G663T	p.L221L	GACCCTGGCAGAA	.	187	65	149	0	.	227	T	214501025	G	T	214501025	2	4	27	1	0	0	0	0	0	0	0	1	14822	1335	47	3		3	SMYD2	1	214501025	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	4085903	214501025	34749596	17	3047											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228465514	228465514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OBSCN	NM_001271223	exon30	c.T8101C	p.F2701L	ATCCAATTTGTAG	.	328	34	230	0	.	403	C	228465514	T	C	228465514	3	2	27	1	0	0	0	0	1	0	0	0	10812	1493	52	2	6908	2	OBSCN	1	228465514	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	13964489	228465514	20785107	18	3048											
CAPN9	10753	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230914798	230914798	+	Missense_Mutation	SNP	G	G	A	rs145648359		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CAPN9	NM_006615	exon9	c.G1033A	p.A345T	GAAGACGCGATCC	.	116	23	85	1	G|1.000;A|0.000	91	A	230914798	G	A	230914798	3	1	27	1	0	0	0	0	1	0	0	0	2632	1087	38	1	1067	1	CAPN9	1	230914798	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	2449284	230914798	18335823	19	3049											
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263522	248263522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR2L13	NM_175911	exon3	c.C845A	p.P282H	TTACCCCCATGCT	.	181	25	113	0	.	70	A	248263522	C	A	248263522	3	1	27	1	0	0	0	0	1	0	0	0	11006	623	22	3	847	3	OR2L13	1	248263522	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	17348724	248263522	987099	20	3050											
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1664717	1664717	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PXDN	NM_012293	exon14	c.C1773A	p.R591R	CTCATAGCGACCT	.	98	12	74	0	.	166	T	1664717	G	T	1664717	2	4	27	1	0	0	0	0	0	0	0	1	12847	958	34	3		3	PXDN	2	1664717	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10		1664717	241534656	21	3051											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33174004	33174004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LTBP1	NM_206943	exon2	c.G557C	p.C186S	AGAGGTGCACCAA	.	189	38	144	0	.	230	C	33174004	G	C	33174004	3	2	27	1	0	0	0	0	1	0	0	0	9073	1319	46	4	563	4	LTBP1	2	33174004	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	31509287	33174004	210025369	22	3052											
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60688381	60688381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	BCL11A	NM_018014	exon4	c.C1666A	p.Q556K	AGTGCTGCATGGA	.	58	9	73	0	.	1149	T	60688381	G	T	60688381	3	4	27	1	0	0	0	0	1	0	0	0	1363	1328	46	3	951	3	BCL11A	2	60688381	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	27514377	60688381	182510992	23	3053											
HK2	3099	broad.mit.edu;mdanderson.org	37	2	75107697	75107697	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HK2	NM_000189	exon10	c.1570+1G>T	.	GCACAGGTACACG	.	84	13	87	0	.	252	T	75107697	G	T	75107697	5	4	27	1	0	0	0	0	0	0	1	0	7191	1275	44	3	1609	3	HK2	2	75107697	Splice_Site	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	14419316	75107697	168091676	24	3054											
PROM2	150696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95952937	95952937	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PROM2	NM_001165977	exon19	c.C2151T	p.A717A	GCCTGCCTGGGCA	.	100	23	85	0	.	91	T	95952937	C	T	95952937	2	4	27	1	0	0	0	0	0	0	0	1	12556	668	24	3		3	PROM2	2	95952937	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	20845240	95952937	147246436	25	3055											
CCDC93	54520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118716046	118716046	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC93	NM_019044	exon12	c.A900C	p.L300L	AGCTGATAGCTCA	.	365	73	282	0	.	154	G	118716046	T	G	118716046	2	3	27	1	0	0	0	0	0	0	0	1	2872	1393	49	5		5	CCDC93	2	118716046	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	22763109	118716046	124483327	26	3056											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	149247524	149247524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MBD5	NM_018328	exon12	c.C3624A	p.N1208K	GCGAAACAGGTGG	.	109	11	108	0	.	95	A	149247524	C	A	149247524	3	1	27	1	0	0	0	0	1	0	0	0	9347	477	17	3	3650	3	MBD5	2	149247524	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	30531478	149247524	93951849	27	3057											
GAD1	2571	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171685987	171685987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GAD1	NM_000817	exon4	c.T148G	p.F50V	ATAGGCTTCTTGC	.	94	20	97	0	.	91	G	171685987	T	G	171685987	3	3	27	1	0	0	0	0	1	0	0	0	6179	1609	56	5	158	5	GAD1	2	171685987	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	22438463	171685987	71513386	28	3058											
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172749745	172749745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC25A12	NM_003705	exon2	c.T36A	p.D12E	ATGAGGATCCCCT	.	333	55	264	0	.	90	T	172749745	A	T	172749745	3	4	27	1	0	0	0	0	1	0	0	0	14474	330	12	4	2068	4	SLC25A12	2	172749745	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	1063758	172749745	70449628	29	3059											
EVX2	344191	broad.mit.edu;bcgsc.ca	37	2	176948182	176948182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EVX2	NM_001080458	exon1	c.C323A	p.A108E	GCGGCCGCCTCTG	.	57	10	61	1	.	70	T	176948182	G	T	176948182	3	4	27	1	0	0	0	0	1	0	0	0	5295	1087	38	1	1117	1	EVX2	2	176948182	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	4198437	176948182	66251191	30	3060											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204354662	204354662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RAPH1	NM_213589	exon4	c.A377G	p.H126R	AATGTATGTCGGC	.	569	34	433	0	.	1151	C	204354662	T	C	204354662	3	2	27	1	0	0	0	0	1	0	0	0	13050	1464	51	2	3590	2	RAPH1	2	204354662	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	27406480	204354662	38844711	31	3061											
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	211456588	211456589	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CPS1	NM_001122633	exon11	c.999_1000insA	p.N333fs	CACAAACAAACAG	.	261	50	179	0	.	162	A	211456589	-	A	211456588	7	5	27	1	0	1	1	0	0	0	0	0	3823	477	17	0	1041	0	CPS1	2	211456588	Frame_Shift_Ins	INS	-	TCGA-CC-5262-01A-01D-A12Z-10	7101926	211456588	31742785	32	3062											
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234878427	234878427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TRPM8	NM_024080	exon16	c.T2114A	p.V705E	CCTTGGTGGGCTG	.	642	108	583	1	.	94	A	234878427	T	A	234878427	3	1	27	1	0	0	0	0	1	0	0	0	16589	1696	59	4	2172	4	TRPM8	2	234878427	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	23421839	234878427	8320946	33	3063											
SLC4A7	9497	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27473077	27473077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC4A7	NM_003615	exon7	c.T835G	p.S279A	GAAGAGATAAAGG	.	225	50	183	1	.	94	C	27473077	A	C	27473077	3	2	27	1	0	0	0	0	1	0	0	0	14658	333	12	5	2885	5	SLC4A7	3	27473077	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10		27473077	170549353	34	3064											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274899	41274899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CTNNB1	NM_001098209	exon8	c.G1149C	p.W383C	TCTTTGGACTCTC	.	260	56	194	0	.	24361	C	41274899	G	C	41274899	3	2	27	1	0	0	0	0	1	0	0	0	4016	1183	41	4	1175	4	CTNNB1	3	41274899	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	13801822	41274899	156747531	35	3065											
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42787466	42787466	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC13	NM_144719	exon7	c.G774T	p.S258S	CCCTGGCGAAGAT	.	107	14	77	0	.	91	A	42787466	C	A	42787466	2	1	27	1	0	0	0	0	0	0	0	1	2765	755	27	1		1	CCDC13	3	42787466	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	1512567	42787466	155234964	36	3066											
MAP4	4134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47957722	47957722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MAP4	NM_001134364	exon7	c.A1595C	p.K532T	ACGTTCTTGATGA	.	393	85	345	0	.	93	G	47957722	T	G	47957722	3	3	27	1	0	0	0	0	1	0	0	0	9258	1609	56	5	3274	5	MAP4	3	47957722	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	5170256	47957722	150064708	37	3067											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57438657	57438657	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH12	NM_178504	exon25	c.T3630C	p.N1210N	ATTGCAATTAATG	.	134	30	112	0	.	47	G	57438657	A	G	57438657	2	3	27	1	0	0	0	0	0	0	0	1	4600	98	4	2		2	DNAH12	3	57438657	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	9480935	57438657	140583773	38	3068											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57443514	57443514	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH12	NM_178504	exon22	c.G3201A	p.K1067K	GAGCCACTTTTCC	.	175	42	127	0	.	47	T	57443514	C	T	57443514	2	4	27	1	0	0	0	0	0	0	0	1	4600	564	20	3		3	DNAH12	3	57443514	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	4857	57443514	140578916	39	3069											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64599095	64599095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAMTS9	NM_182920	exon22	c.G3280C	p.E1094Q	TGGTCTCAGGGTC	.	162	34	153	0	.	230	G	64599095	C	G	64599095	3	3	27	1	0	0	0	0	1	0	0	0	273	835	29	4	2599	4	ADAMTS9	3	64599095	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	7155581	64599095	133423335	40	3070											
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134339676	134339676	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	KY,NS,carcinoma,0	KY	NM_178554	exon7	c.C507T	p.D169D	CAGTTCGTCTAGG	.	155	36	110	1	.	24	A	134339676	G	A	134339676	2	1	27	1	0	0	0	0	0	0	0	1	8586	1136	40	1		1	KY	3	134339676	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	69740581	134339676	63682754	41	3071											
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154055824	154055824	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPR149	NM_001038705	exon4	c.G1860A	p.E620E	AAGAACCTCCAAG	.	513	49	457	0	.	96	T	154055824	C	T	154055824	2	4	27	1	0	0	0	0	0	0	0	1	6654	680	24	3		3	GPR149	3	154055824	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	19716148	154055824	43966606	42	3072											
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164906413	164906414	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.V736M	GACCCACGGGAGG	.	109	20	100	0	.	.	TT	164906414	CG	TT	164906413	3	4	27	1	0	0	0	0	1	0	0	0	14744	536	19	1	731	1	SLITRK3	3	164906413	Missense_Mutation	DNP	CG	TCGA-CC-5262-01A-01D-A12Z-10	10850589	164906413	33116017	43	3073											
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169820663	169820663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PHC3	NM_024947	exon13	c.A2528T	p.N843I	CTTTGATTATCAG	.	297	44	248	0	.	227	A	169820663	T	A	169820663	3	1	27	1	0	0	0	0	1	0	0	0	11818	1493	52	4	471	4	PHC3	3	169820663	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	4914250	169820663	28201767	44	3074											
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172835457	172835457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPATA16	NM_031955	exon2	c.T65G	p.V22G	TTTGGAACAAGCT	.	783	165	698	1	.	94	C	172835457	A	C	172835457	3	2	27	1	0	0	0	0	1	0	0	0	15000	43	2	5	1684	5	SPATA16	3	172835457	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	3014794	172835457	25186973	45	3075											
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	186915400	186915400	+	Missense_Mutation	SNP	A	A	T	rs41469544	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RTP1	NM_153708	exon1	c.A97T	p.T33S	CTCACTACTGACG	.	255	46	244	0	.	155	T	186915400	A	T	186915400	3	4	27	1	0	0	0	0	1	0	0	0	13733	391	14	4	99	4	RTP1	3	186915400	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	14079943	186915400	11107030	46	3076											
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578157	5578157	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EVC2	NM_147127	exon18	c.C3082T	p.L1028L	CCTCCAGCTTCCT	.	54	20	47	0	.	155	A	5578157	G	A	5578157	2	1	27	1	0	0	0	0	0	0	0	1	5286	962	34	3		3	EVC2	4	5578157	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10		5578157	185576119	47	3077											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85707240	85707240	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WDFY3	NM_014991	exon24	c.A3954G	p.P1318P	CTCCTCTGGTACT	.	244	44	207	0	.	93	C	85707240	T	C	85707240	2	2	27	1	0	0	0	0	0	0	0	1	17267	1567	55	2		2	WDFY3	4	85707240	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	80129083	85707240	105447036	48	3078											
ALPK1	80216	broad.mit.edu;bcgsc.ca	37	4	113352530	113352530	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ALPK1	NM_001102406	exon11	c.A1827G	p.K609K	CAGAAAAGAGCCT	.	163	7	165	1	.	337	G	113352530	A	G	113352530	2	3	27	1	0	0	0	0	0	0	0	1	544	69	3	2		2	ALPK1	4	113352530	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	27645290	113352530	77801746	49	3079											
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146029198	146029198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ABCE1	NM_002940	exon4	c.A221G	p.N74S	TTGTCAATCTACC	.	152	26	86	0	.	91	G	146029198	A	G	146029198	3	3	27	1	0	0	0	0	1	0	0	0	64	101	4	2	231	2	ABCE1	4	146029198	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	32676668	146029198	45125078	50	3080											
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152058972	152058972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SH3D19	NM_001009555	exon15	c.A1568T	p.Y523F	AGAAGATAAACAA	.	134	30	95	0	.	92	A	152058972	T	A	152058972	3	1	27	1	0	0	0	0	1	0	0	0	14249	1406	49	4	832	4	SH3D19	4	152058972	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	6029774	152058972	39095304	51	3081											
GPM6A	2823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	176556173	176556173	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPM6A	NM_201591	exon7	c.C720T	p.A240A	CACATAGGCCCAG	.	216	41	141	0	.	90	A	176556173	G	A	176556173	2	1	27	1	0	0	0	0	0	0	0	1	6615	987	35	3		3	GPM6A	4	176556173	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	24497201	176556173	14598103	52	3082											
VCAN	1462	broad.mit.edu;bcgsc.ca	37	5	82816737	82816737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	VCAN	NM_004385	exon7	c.A2612G	p.E871G	CTGATGAAGACAT	.	180	9	144	0	.	238	G	82816737	A	G	82816737	3	3	27	1	0	0	0	0	1	0	0	0	17135	246	9	2	2634	2	VCAN	5	82816737	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10		82816737	98098523	53	3083											
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102494240	102494240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PPIP5K2	NM_015216	exon15	c.A1700T	p.E567V	CTGATGAAGGACG	.	544	108	343	0	.	92	T	102494240	A	T	102494240	3	4	27	1	0	0	0	0	1	0	0	0	12333	246	9	4	1758	4	PPIP5K2	5	102494240	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	19677503	102494240	78421020	54	3084											
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237567	140237567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHA10	NM_031859	exon1	c.G1934T	p.R645L	GCCAGCGCCTACT	.	121	26	211	0	.	99	T	140237567	G	T	140237567	3	4	27	1	0	0	0	0	1	0	0	0	11520	1087	38	1	1936	1	PCDHA10	5	140237567	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	37743327	140237567	40677693	55	3085											
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140755534	140755534	+	Silent	SNP	G	G	A	rs200712802	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHGA6	NM_018919	exon1	c.G1884A	p.T628T	GCGCACGGCGCGC	.	108	19	129	0	G|0.996;A|0.004	67	A	140755534	G	A	140755534	2	1	27	1	0	0	0	0	0	0	0	1	11558	1103	39	1		1	PCDHGA6	5	140755534	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	517967	140755534	40159726	56	3086											
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170305242	170305242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RANBP17	NM_022897	exon2	c.G160C	p.G54R	GAACAAGGAACAG	.	304	58	283	0	.	524	C	170305242	G	C	170305242	3	2	27	1	0	0	0	0	1	0	0	0	13027	1001	35	4	166	4	RANBP17	5	170305242	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	29549708	170305242	10610018	57	3087											
IRF4	3662	broad.mit.edu;mdanderson.org	37	6	393366	393366	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IRF4	NM_001195286	exon2	c.A214T	p.K72X	CTCTTCAAGGTCT	.	33	6	37	0	.	659	T	393366	A	T	393366	4	4	27	1	0	0	0	0	0	1	0	0	7832	131	5	4	216	4	IRF4	6	393366	Nonsense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10		393366	170721701	58	3088											
ZNF318	24149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43306777	43306777	+	Silent	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF318	NM_014345	exon10	c.A4959T	p.L1653L	TTTCCCTAGGGCC	.	295	60	240	2	.	157	A	43306777	T	A	43306777	2	1	27	1	0	0	0	0	0	0	0	1	17833	1509	53	4		4	ZNF318	6	43306777	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	42913411	43306777	127808290	59	3089											
RHAG	6005	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49604389	49604389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RHAG	NM_000324	exon1	c.T137C	p.I46T	AAGAATATGCCCA	.	371	82	224	2	.	154	G	49604389	A	G	49604389	3	3	27	1	0	0	0	0	1	0	0	0	13315	449	16	2	1132	2	RHAG	6	49604389	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	6297612	49604389	121510678	60	3090											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	75853093	75853093	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	COL12A1	NM_004370	exon26	c.A4702T	p.R1568X	GAGGTCTGGGTAA	.	214	32	128	0	.	142	A	75853093	T	A	75853093	4	1	27	1	0	0	0	0	0	1	0	0	3669	1588	55	4	4653	4	COL12A1	6	75853093	Nonsense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	26248704	75853093	95261974	61	3091											
RWDD2A	112611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83904246	83904249	+	Frame_Shift_Del	DEL	CAAG	CAAG	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CAAG	CAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RWDD2A	NM_033411	exon2	c.76_79del	p.26_27del	CCTAACCAAGGAG	.	132	16	124	0	.	68	-	83904249	CAAG	-	83904246	7	5	27	1	0	1	0	1	0	0	0	0	13755	595	21	0	78	0	RWDD2A	6	83904246	Frame_Shift_Del	DEL	CAAG	TCGA-CC-5262-01A-01D-A12Z-10	8051153	83904246	87210821	62	3092											
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	85446949	85446950	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.T426N	GTTGAGGGTGAGG	.	189	30	195	0	.	.	AT	85446950	GG	AT	85446949	3	1	27	1	0	0	0	0	1	0	0	0	15650	1219	43	3	549	3	TBX18	6	85446949	Missense_Mutation	DNP	GG	TCGA-CC-5262-01A-01D-A12Z-10	1542703	85446949	85668118	63	3093											
EPM2A	7957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146007291	146007291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPM2A	NM_005670	exon2	c.A443C	p.N148T	GCAATATTAAAAT	.	227	36	196	1	.	415	G	146007291	T	G	146007291	3	3	27	1	0	0	0	0	1	0	0	0	5183	1493	52	5	598	5	EPM2A	6	146007291	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	60560342	146007291	25107776	64	3094											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18833076	18833076	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HDAC9	NM_178423	exon17	c.2313+1G>A	.	CTGAAGGTGAGGT	.	157	33	155	0	.	227	A	18833076	G	A	18833076	5	1	27	1	0	0	0	0	0	0	1	0	7014	1275	44	3	2436	3	HDAC9	7	18833076	Splice_Site	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10		18833076	140305587	65	3095											
PON1	5444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	94947702	94947702	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PON1	NM_000446	exon2	c.A78C	p.T26T	AAGTCGTGTTCTG	.	145	26	148	0	.	91	G	94947702	T	G	94947702	2	3	27	1	0	0	0	0	0	0	0	1	12248	1683	59	5		5	PON1	7	94947702	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	76114626	94947702	64190961	66	3096											
DLX6	1750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96639126	96639126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DLX6	NM_005222	exon3	c.A649T	p.N217Y	TTTCAGAACAAAC	.	246	33	190	0	.	92	T	96639126	A	T	96639126	3	4	27	1	0	0	0	0	1	0	0	0	4575	246	9	4	659	4	DLX6	7	96639126	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	1691424	96639126	62499537	67	3097											
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123092919	123092919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IQUB	NM_178827	exon13	c.T2254A	p.F752I	GAGAAAAATAGTT	.	359	76	300	0	.	156	T	123092919	A	T	123092919	3	4	27	1	0	0	0	0	1	0	0	0	7820	14	1	4	125	4	IQUB	7	123092919	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	26453793	123092919	36045744	68	3098											
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128119312	128119312	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	METTL2B	NM_018396	exon3	c.T303G	p.P101P	ATTCCCTGAGCTG	.	713	130	565	0	.	23	G	128119312	T	G	128119312	2	3	27	1	0	0	0	0	0	0	0	1	9500	1567	55	5		5	METTL2B	7	128119312	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	5026393	128119312	31019351	69	3099											
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154862969	154862969	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HTR5A	NM_024012	exon1	c.C360T	p.C120C	CGCGTGCGACGTG	.	40	8	33	0	.	155	T	154862969	C	T	154862969	2	4	27	1	0	0	0	0	0	0	0	1	7450	776	27	1		1	HTR5A	7	154862969	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	26743657	154862969	4275694	70	3100											
TNFRSF10D	8793	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23002148	23002148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TNFRSF10D	NM_003840	exon7	c.G769T	p.V257F	AAAGGACCTTGGG	.	83	15	103	1	.	651	A	23002148	C	A	23002148	3	1	27	1	0	0	0	0	1	0	0	0	16280	521	18	3	403	3	TNFRSF10D	8	23002148	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		23002148	123361874	71	3101											
STC1	6781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23712004	23712004	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STC1	NM_003155	exon1	c.G33A	p.L11L	GATCACCAGCACC	.	273	67	232	0	.	94	T	23712004	C	T	23712004	2	4	27	1	0	0	0	0	0	0	0	1	15274	581	21	3		3	STC1	8	23712004	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	709856	23712004	122652018	72	3102											
EPHX2	2053	ucsc.edu;bcgsc.ca	37	8	27361175	27361175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPHX2	NM_001979	exon3	c.T241C	p.C81R	AAAGTCTGCCTCC	.	43	5	47	0	.	91	C	27361175	T	C	27361175	3	2	27	1	0	0	0	0	1	0	0	0	5180	1580	55	2	251	2	EPHX2	8	27361175	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	3649171	27361175	119002847	73	3103											
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52366111	52366111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PXDNL	NM_144651	exon10	c.C1217A	p.T406N	TGAACAGTGCCGT	.	364	109	344	1	.	70	T	52366111	G	T	52366111	3	4	27	1	0	0	0	0	1	0	0	0	12848	1029	36	3	3230	3	PXDNL	8	52366111	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	25004936	52366111	93997911	74	3104											
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57876515	57876515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IMPAD1	NM_017813	exon5	c.C917G	p.A306G	AAGATGGCATTAC	.	320	69	260	0	.	91	C	57876515	G	C	57876515	3	2	27	1	0	0	0	0	1	0	0	0	7725	1203	42	4	166	4	IMPAD1	8	57876515	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	5510404	57876515	88487507	75	3105											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71068895	71068895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NCOA2	NM_006540	exon11	c.A1705G	p.M569V	GATTCATATTAAC	.	164	28	153	0	.	639	C	71068895	T	C	71068895	3	2	27	1	0	0	0	0	1	0	0	0	10229	1406	49	2	2741	2	NCOA2	8	71068895	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	13192380	71068895	75295127	76	3106											
PLEKHF2	79666	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	96166845	96166845	+	Missense_Mutation	SNP	T	T	G	rs200210769	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PLEKHF2	NM_024613	exon2	c.T573G	p.F191L	GAGATTTCTTCTT	.	598	102	421	2	T|0.999;C|0.001	92	G	96166845	T	G	96166845	3	3	27	1	0	0	0	0	1	0	0	0	12067	1780	62	5	575	5	PLEKHF2	8	96166845	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	25097950	96166845	50197177	77	3107											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110432768	110432768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PKHD1L1	NM_177531	exon23	c.C2546A	p.P849H	GACTTCCTGCATT	.	334	107	176	0	.	145	A	110432768	C	A	110432768	3	1	27	1	0	0	0	0	1	0	0	0	11972	681	24	3	2636	3	PKHD1L1	8	110432768	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	14265923	110432768	35931254	78	3108											
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	122627257	122627257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HAS2	NM_005328	exon4	c.T751A	p.W251R	AGATCCAGGAATC	.	174	28	94	0	.	236	T	122627257	A	T	122627257	3	4	27	1	0	0	0	0	1	0	0	0	6962	188	7	4	911	4	HAS2	8	122627257	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	12194489	122627257	23736765	79	3109											
DERL1	79139	ucsc.edu;bcgsc.ca	37	8	124054284	124054284	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DERL1	NM_001134671	exon1	c.T79C	p.L27L	CGACCAAGGGCAC	.	47	6	36	0	.	226	G	124054284	A	G	124054284	2	3	27	1	0	0	0	0	0	0	0	1	4446	69	3	2		2	DERL1	8	124054284	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	1427027	124054284	22309738	80	3110											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144812668	144812668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM83H	NM_198488	exon2	c.C85T	p.R29C	CCAGGCGGTAGTA	.	29	11	30	0	.	92	A	144812668	G	A	144812668	3	1	27	1	0	0	0	0	1	0	0	0	5640	1116	39	1	3470	1	FAM83H	8	144812668	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	20758384	144812668	1551354	81	3111											
DENND4C	55667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19325935	19325935	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DENND4C	NM_017925	exon14	c.1954-2A>G	.	TTTTCTAGTTGTT	.	410	74	289	1	.	92	G	19325935	A	G	19325935	5	3	27	1	0	0	0	0	0	0	1	0	4435	434	15	2	1282	2	DENND4C	9	19325935	Splice_Site	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10		19325935	121887496	82	3112											
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32418350	32418350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ACO1	NM_002197	exon6	c.A499G	p.M167V	CACAACATGCGGA	.	379	62	365	0	.	226	G	32418350	A	G	32418350	3	3	27	1	0	0	0	0	1	0	0	0	146	217	8	2	517	2	ACO1	9	32418350	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	13092415	32418350	108795081	83	3113											
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50533357	50533357	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C10orf71	NM_001135196	exon3	c.C2767A	p.R923R	AACACACGGGGCA	.	90	22	75	0	.	90	A	50533357	C	A	50533357	2	1	27	1	0	0	0	0	0	0	0	1	1614	527	19	1		1	C10orf71	10	50533357	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		50533357	85001390	84	3114											
PRF1	5551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	72358776	72358776	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRF1	NM_001083116	exon3	c.C701A	p.S234X	AGGGCCGATATGC	.	77	11	98	0	.	578	T	72358776	G	T	72358776	4	4	27	1	0	0	0	0	0	1	0	0	12478	1059	37	1	970	1	PRF1	10	72358776	Nonsense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	21825419	72358776	63175971	85	3115											
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72468471	72468471	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAMTS14	NM_139155	exon4	c.C807G	p.D269E	GGACGACTCGGTG	.	123	31	130	0	.	232	G	72468471	C	G	72468471	3	3	27	1	0	0	0	0	1	0	0	0	259	564	20	4	821	4	ADAMTS14	10	72468471	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	109695	72468471	63066276	86	3116											
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103550822	103550822	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MGEA5	NM_012215	exon14	c.T2285A	p.L762H	AGGCTGAGGGAAA	.	289	60	234	0	.	93	T	103550822	A	T	103550822	3	4	27	1	0	0	0	0	1	0	0	0	9555	304	11	4	477	4	MGEA5	10	103550822	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	31082351	103550822	31983925	87	3117											
CNNM2	54805	ucsc.edu;bcgsc.ca	37	10	104679476	104679476	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CNNM2	NM_199076	exon1	c.A1239G	p.K413K	GGAAAAACTGCTG	.	52	5	51	0	.	515	G	104679476	A	G	104679476	2	3	27	1	0	0	0	0	0	0	0	1	3613	40	2	2		2	CNNM2	10	104679476	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	1128654	104679476	30855271	88	3118											
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121556404	121556404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	INPP5F	NM_014937	exon7	c.C847T	p.R283C	ATTTCACGCCGAA	.	319	67	211	0	.	229	T	121556404	C	T	121556404	3	4	27	1	0	0	0	0	1	0	0	0	7758	536	19	1	873	1	INPP5F	10	121556404	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	16876928	121556404	13978343	89	3119											
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123843041	123843041	+	Silent	SNP	G	G	T	rs201912981	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TACC2	NM_206862	exon4	c.G1026T	p.P342P	TCTGCCGCACGCA	.	80	18	83	0	G|0.999;A|0.001	296	T	123843041	G	T	123843041	2	4	27	1	0	0	0	0	0	0	0	1	15499	1074	38	1		1	TACC2	10	123843041	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	2286637	123843041	11691706	90	3120											
KIF18A	81930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	28116264	28116264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF18A	NM_031217	exon3	c.A409C	p.M137L	GTAACATTGTTAG	.	277	46	226	0	.	92	G	28116264	T	G	28116264	3	3	27	1	0	0	0	0	1	0	0	0	8280	1493	52	5	2347	5	KIF18A	11	28116264	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10		28116264	106890252	91	3121											
ELMOD1	55531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	107518278	107518278	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_018712	exon7	c.505delC	p.P169fs	GATGATCCTAAAA	.	173	41	154	0	.	.	-	107518278	C	-	107518278	7	5	27	1	0	1	0	1	0	0	0	0	5068	855	30	0	527	0	ELMOD1	11	107518278	Frame_Shift_Del	DEL	C	TCGA-CC-5262-01A-01D-A12Z-10	79402014	107518278	27488238	92	3122											
EI24	9538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125448940	125448940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EI24	NM_001007277	exon7	c.G537T	p.L179F	CCTTTTGCTGCAG	.	179	15	152	0	.	91	T	125448940	G	T	125448940	3	4	27	1	0	0	0	0	1	0	0	0	4985	1310	46	3	559	3	EI24	11	125448940	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	17930662	125448940	9557576	93	3123											
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9027104	9027104	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	A2ML1	NM_144670	exon34	c.C4305T	p.V1435V	CAAGGTCTATGAC	.	97	26	92	0	.	93	T	9027104	C	T	9027104	2	4	27	1	0	0	0	0	0	0	0	1	5	900	32	3		3	A2ML1	12	9027104	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		9027104	124824791	94	3124											
WBP11	51729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14943652	14943652	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WBP11	NM_016312	exon10	c.A1047G	p.V349V	TTCCTCTACTTCC	.	372	67	308	0	.	92	C	14943652	T	C	14943652	2	2	27	1	0	0	0	0	0	0	0	1	17255	1509	53	2		2	WBP11	12	14943652	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	5916548	14943652	118908243	95	3125											
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	33592365	33592365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SYT10	NM_198992	exon1	c.G93A	p.W31X	CTTCTCCCACTCC	.	144	12	130	0	.	92	T	33592365	C	T	33592365	4	4	27	1	0	0	0	0	0	1	0	0	15463	624	22	3	1506	3	SYT10	12	33592365	Nonsense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	18648713	33592365	100259530	96	3126											
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	42858905	42858905	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRICKLE1	NM_001144882	exon7	c.G931C	p.D311H	GGACGTCTTCACC	.	150	40	148	0	.	518	G	42858905	C	G	42858905	3	3	27	1	0	0	0	0	1	0	0	0	12486	913	32	4	1572	4	PRICKLE1	12	42858905	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	9266540	42858905	90992990	97	3127											
STAT2	6773	broad.mit.edu;bcgsc.ca	37	12	56742939	56742954	+	Frame_Shift_Del	DEL	TCCCCTACCTGAAGGT	TCCCCTACCTGAAGGT	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	TCCCCTACCTGAAGGT	TCCCCTACCTGAAGGT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STAT2	NM_005419	exon16	c.1433_1440del	p.478_480del	CCCCACTCCCCTA	.	99	9	90	0	.	847	-	56742954	TCCCCTACCTGAAGGT	-	56742939	7	5	27	1	0	1	0	1	0	0	0	0	15264	1566	54	0		0	STAT2	12	56742939	Frame_Shift_Del	DEL	TCCCCTACCTGAAGGT	TCGA-CC-5262-01A-01D-A12Z-10	13884034	56742939	77108956	98	3128											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105538197	105538197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA1033	NM_015275	exon21	c.C2143A	p.P715T	CTGAATCCAATTC	.	422	75	367	0	.	91	A	105538197	C	A	105538197	3	1	27	1	0	0	0	0	1	0	0	0	8206	855	30	3	2225	3	KIAA1033	12	105538197	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	48795258	105538197	28313698	99	3129											
PAN3	255967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28794510	28794510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PAN3	NM_175854	exon6	c.C995T	p.A332V	GATTAGCGCCAGG	.	127	27	86	0	.	69	T	28794510	C	T	28794510	3	4	27	1	0	0	0	0	1	0	0	0	11415	768	27	1	1017	1	PAN3	13	28794510	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		28794510	86375368	100	3130											
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20612277	20612277	+	Missense_Mutation	SNP	G	G	A	rs139546094		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR4N5	NM_001004724	exon1	c.G383A	p.R128Q	TCTGCCGGCCTTT	.	416	100	347	0	G|1.000;A|0.000	69	A	20612277	G	A	20612277	3	1	27	1	0	0	0	0	1	0	0	0	11079	1116	39	1	385	1	OR4N5	14	20612277	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10		20612277	86737263	101	3131											
KHNYN	23351	broad.mit.edu;bcgsc.ca	37	14	24905604	24905604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KHNYN	NM_015299	exon7	c.T1696G	p.F566V	CTGCCCTTTACCT	.	105	10	102	0	.	93	G	24905604	T	G	24905604	3	3	27	1	0	0	0	0	1	0	0	0	8150	1609	56	5	1718	5	KHNYN	14	24905604	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	4293327	24905604	82443936	102	3132											
DDHD1	80821	broad.mit.edu;bcgsc.ca	37	14	53522391	53522391	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DDHD1	NM_001160147	exon11	c.A2253G	p.K751K	GCTTGCTTTGCCT	.	137	6	102	0	.	92	C	53522391	T	C	53522391	2	2	27	1	0	0	0	0	0	0	0	1	4326	1606	56	2		2	DDHD1	14	53522391	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	28616787	53522391	53827149	103	3133											
ADAM10	102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58902701	58902701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAM10	NM_001110	exon14	c.G1820T	p.C607F	CTGGCACAAGTTG	.	115	23	96	0	.	227	A	58902701	C	A	58902701	3	1	27	1	0	0	0	0	1	0	0	0	234	478	17	3	438	3	ADAM10	15	58902701	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		58902701	43628691	104	3134											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75983035	75983035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSPG4	NM_001897	exon3	c.C371T	p.S124L	TCGACTGACAACG	.	260	58	225	0	.	229	A	75983035	G	A	75983035	3	1	27	1	0	0	0	0	1	0	0	0	3960	1294	45	3	6629	3	CSPG4	15	75983035	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	17080334	75983035	26548357	105	3135											
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99251033	99251033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IGF1R	NM_000875	exon2	c.T337C	p.Y113H	CTCTTCTACAACT	.	183	28	139	0	.	1490	C	99251033	T	C	99251033	3	2	27	1	0	0	0	0	1	0	0	0	7571	1522	53	2	343	2	IGF1R	15	99251033	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	23267998	99251033	3280359	106	3136											
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99459277	99459277	+	Missense_Mutation	SNP	A	A	G	rs144533252		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IGF1R	NM_000875	exon9	c.A1913G	p.N638S	TGCCCAACGGCAA	.	269	35	233	1	A|1.000;G|0.000	1490	G	99459277	A	G	99459277	3	3	27	1	0	0	0	0	1	0	0	0	7571	43	2	2	1947	2	IGF1R	15	99459277	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	208244	99459277	3072115	107	3137											
LRRC28	123355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99796167	99796167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRRC28	NM_144598	exon2	c.C5T	p.A2V	TCATGGCGTCCGA	.	191	19	141	0	.	90	T	99796167	C	T	99796167	3	4	27	1	0	0	0	0	1	0	0	0	8982	768	27	1	7	1	LRRC28	15	99796167	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	336890	99796167	2735225	108	3138											
RHBDL1	9028	broad.mit.edu;bcgsc.ca	37	16	727801	727802	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RHBDL1	NM_003961	exon7	c.1066_1067insA	p.A356fs	GGCCGGGCCGTGT	.	10	4	44	0	.	90	A	727802	-	A	727801	7	5	27	1	0	1	1	0	0	0	0	0	13321	1203	42	0	1092	0	RHBDL1	16	727801	Frame_Shift_Ins	INS	-	TCGA-CC-5262-01A-01D-A12Z-10		727801	89626952	109	3139											
STUB1	10273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	732214	732214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STUB1	NM_005861	exon6	c.T719C	p.M240T	AGCTGATGCGGGA	.	56	22	96	0	.	226	C	732214	T	C	732214	3	2	27	1	0	0	0	0	1	0	0	0	15334	1464	51	2	741	2	STUB1	16	732214	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	4413	732214	89622539	110	3140											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21031159	21031159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH3	NM_017539	exon41	c.G5809A	p.E1937K	CTAATTCCATTTC	.	434	93	481	0	.	167	T	21031159	C	T	21031159	3	4	27	1	0	0	0	0	1	0	0	0	4603	864	30	3	6628	3	DNAH3	16	21031159	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	20298945	21031159	69323594	111	3141											
ZNF768	79724	broad.mit.edu;mdanderson.org	37	16	30536127	30536127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF768	NM_024671	exon2	c.C1334G	p.A445G	TGGATGGCCAGCA	.	62	14	80	0	.	90	C	30536127	G	C	30536127	3	2	27	1	0	0	0	0	1	0	0	0	18138	1203	42	4	292	4	ZNF768	16	30536127	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	9504968	30536127	59818626	112	3142											
FBXL19	54620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30939817	30939817	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FBXL19	NM_001099784	exon6	c.G717A	p.K239K	CCTGAAGAAGGTG	.	121	18	116	1	.	661	A	30939817	G	A	30939817	2	1	27	1	0	0	0	0	0	0	0	1	5715	933	33	3		3	FBXL19	16	30939817	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	403690	30939817	59414936	113	3143											
NLRP1	22861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5433881	5433881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NLRP1	NM_001033053	exon12	c.T3452C	p.V1151A	CCTGCCACCATCC	.	105	16	121	1	.	274	G	5433881	A	G	5433881	3	3	27	1	0	0	0	0	1	0	0	0	10471	159	6	2	1068	2	NLRP1	17	5433881	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10		5433881	75761329	114	3144											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7404886	7404887	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.G730W	CACCCCAGGGAAC	.	95	32	86	0	.	.	GT	7404887	AG	GT	7404886	3	3	27	1	0	0	0	0	1	0	0	0	12214	175	7	2	2241	2	POLR2A	17	7404886	Missense_Mutation	DNP	AG	TCGA-CC-5262-01A-01D-A12Z-10	1971005	7404886	73790324	115	3145											
TEKT3	64518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15211984	15211984	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TEKT3	NM_031898	exon8	c.T1253A	p.L418Q	TACCGTAGCTGAG	.	110	20	163	0	.	92	T	15211984	A	T	15211984	3	4	27	1	0	0	0	0	1	0	0	0	15751	420	15	4	227	4	TEKT3	17	15211984	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	7807098	15211984	65983226	116	3146											
SMARCE1	6605	broad.mit.edu;bcgsc.ca	37	17	38787170	38787170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMARCE1	NM_003079	exon10	c.G823A	p.G275S	TCAGACCGCACAA	.	107	5	95	0	.	227	T	38787170	C	T	38787170	3	4	27	1	0	0	0	0	1	0	0	0	14780	652	23	1	420	1	SMARCE1	17	38787170	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	23575186	38787170	42408040	117	3147											
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40696106	40696106	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NAGLU	NM_000263	exon6	c.G2082A	p.Q694Q	CCAACAGCACCAG	.	63	16	70	0	.	90	A	40696106	G	A	40696106	2	1	27	1	0	0	0	0	0	0	0	1	10143	962	34	3		3	NAGLU	17	40696106	Silent	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	1908936	40696106	40499104	118	3148											
FAM134C	162427	ucsc.edu;bcgsc.ca	37	17	40737144	40737144	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM134C	NM_178126	exon6	c.A726G	p.Q242Q	CTTACATTGTCTC	.	49	4	47	0	.	70	C	40737144	T	C	40737144	2	2	27	1	0	0	0	0	0	0	0	1	5447	1507	52	2		2	FAM134C	17	40737144	Silent	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	41038	40737144	40458066	119	3149											
RSAD1	55316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48557383	48557383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RSAD1	NM_018346	exon3	c.C412G	p.P138A	TCAGCTCCGGGCT	.	131	20	144	0	.	90	G	48557383	C	G	48557383	3	3	27	1	0	0	0	0	1	0	0	0	13694	855	30	4	422	4	RSAD1	17	48557383	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	7820239	48557383	32637827	120	3150											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60744895	60744895	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MRC2	NM_006039	exon6	c.1117+1G>T	.	CTCCAGGTGAGCC	.	32	7	34	0	.	117	T	60744895	G	T	60744895	5	4	27	1	0	0	0	0	0	0	1	0	9758	1275	44	3	1140	3	MRC2	17	60744895	Splice_Site	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	12187512	60744895	20450315	121	3151											
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61788154	61788154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STRADA	NM_001003787	exon7	c.G391T	p.V131L	ATGGCACGATATT	.	156	28	127	0	.	547	A	61788154	C	A	61788154	3	1	27	1	0	0	0	0	1	0	0	0	15323	536	19	1	990	1	STRADA	17	61788154	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	1043259	61788154	19407056	122	3152											
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62018994	62018994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SCN4A	NM_000334	exon24	c.C4648A	p.P1550T	CTGGGGGCCCGCT	.	92	21	115	0	.	93	T	62018994	G	T	62018994	3	4	27	1	0	0	0	0	1	0	0	0	13920	1203	42	3	866	3	SCN4A	17	62018994	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	230840	62018994	19176216	123	3153											
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78704429	78704429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	RPTOR,NS,carcinoma,0	RPTOR	NM_001163034	exon5	c.G577A	p.V193I	ATCTTCGTCTACG	.	131	16	134	0	.	847	A	78704429	G	A	78704429	3	1	27	1	0	0	0	0	1	0	0	0	13665	1145	40	1	595	1	RPTOR	17	78704429	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	16685435	78704429	2490781	124	3154											
LRG1	116844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4538064	4538064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRG1	NM_052972	exon2	c.A932G	p.Y311C	CAACGATAGAGGT	.	101	15	91	0	.	91	C	4538064	T	C	4538064	3	2	27	1	0	0	0	0	1	0	0	0	8942	1406	49	2	115	2	LRG1	19	4538064	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10		4538064	54590919	125	3155											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9020787	9020787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MUC16	NM_024690	exon20	c.G37315T	p.G12439C	TGCAGCCAGAGTA	.	327	71	325	0	.	566	A	9020787	C	A	9020787	3	1	27	1	0	0	0	0	1	0	0	0	9973	594	21	3	6468	3	MUC16	19	9020787	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	4482723	9020787	50108196	126	3156											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15297927	15297927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NOTCH3	NM_000435	exon11	c.C1829A	p.S610Y	GTCCCAGAAGGGC	.	173	35	216	0	.	855	T	15297927	G	T	15297927	3	4	27	1	0	0	0	0	1	0	0	0	10550	942	33	3	5228	3	NOTCH3	19	15297927	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	6277140	15297927	43831056	127	3157											
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35823581	35823581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CD22	NM_001185100	exon3	c.T166C	p.F56L	GAAAGCTTCATCC	.	230	44	165	0	.	526	C	35823581	T	C	35823581	3	2	27	1	0	0	0	0	1	0	0	0	2985	1609	56	2	172	2	CD22	19	35823581	Missense_Mutation	SNP	T	TCGA-CC-5262-01A-01D-A12Z-10	20525654	35823581	23305402	128	3158											
CIC	23152	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42797899	42797899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIC	NM_015125	exon16	c.C3951A	p.D1317E	CGGGGACACCCCG	.	29	6	39	0	.	591	A	42797899	C	A	42797899	3	1	27	1	0	0	0	0	1	0	0	0	3424	477	17	3	4013	3	CIC	19	42797899	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10	6974318	42797899	16331084	129	3159			1	4		2	2	14	N	C_A	5.837014e-05
CIC	23152	broad.mit.edu;ucsc.edu	37	19	42797912	42797912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIC	NM_015125	exon16	c.A3964C	p.K1322Q	GAGCGCAAGGAGG	.	24	4	49	0	.	591	C	42797912	A	C	42797912	3	2	27	1	0	0	0	0	1	0	0	0	3424	131	5	5	4026	5	CIC	19	42797912	Missense_Mutation	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	13	42797912	16331071	130	3160			1	4		2	2	14	N	C_A	5.837014e-05
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44471487	44471487	+	Silent	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF221	NM_013359	exon6	c.A1833C	p.L611L	AAGTCTATGTGGG	.	98	18	66	0	.	91	C	44471487	A	C	44471487	2	2	27	1	0	0	0	0	0	0	0	1	17772	436	16	5		5	ZNF221	19	44471487	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	1673575	44471487	14657496	131	3161											
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54080469	54080469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF331	NM_001253801	exon5	c.G655T	p.D219Y	TGTAAAGACTGTG	.	152	25	136	1	.	663	T	54080469	G	T	54080469	3	4	27	1	0	0	0	0	1	0	0	0	17846	942	33	3	665	3	ZNF331	19	54080469	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	9608982	54080469	5048514	132	3162											
LILRB4	11006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55175420	55175420	+	Silent	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LILRB4	NM_006847	exon3	c.A279T	p.A93A	CTATGCAGGGAGA	.	549	102	557	0	.	93	T	55175420	A	T	55175420	2	4	27	1	0	0	0	0	0	0	0	1	8793	175	7	4		4	LILRB4	19	55175420	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	1094951	55175420	3953563	133	3163											
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45194931	45194931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC13A3	NM_022829	exon11	c.C1431A	p.F477L	AGTGAAGAAGGCG	.	139	19	140	0	.	91	T	45194931	G	T	45194931	3	4	27	1	0	0	0	0	1	0	0	0	14393	933	33	3	389	3	SLC13A3	20	45194931	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10		45194931	17830589	134	3164											
APCDD1L	164284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57035986	57035986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	APCDD1L	NM_153360	exon4	c.C1366A	p.H456N	CCCCATGACAGAG	.	74	18	84	1	.	227	T	57035986	G	T	57035986	3	4	27	1	0	0	0	0	1	0	0	0	766	1290	45	3	143	3	APCDD1L	20	57035986	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	11841055	57035986	5989534	135	3165											
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31979928	31979928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SFI1	NM_001007467	exon13	c.C1316A	p.P439H	TGCTCCCCTTACT	.	151	29	109	0	.	90	A	31979928	C	A	31979928	3	1	27	1	0	0	0	0	1	0	0	0	14156	623	22	3	1362	3	SFI1	22	31979928	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		31979928	19324638	136	3166											
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40572166	40572166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MED14	NM_004229	exon6	c.G781A	p.D261N	ATTTACCTCCTGT	.	357	140	268	0	.	289	T	40572166	C	T	40572166	3	4	27	1	0	0	0	0	1	0	0	0	9432	695	24	3	3687	3	MED14	23	40572166	Missense_Mutation	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		40572166	114698394	137	3167											
PHF16	9767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46844301	46844301	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PHF16	NM_001077445	exon2	c.A6G	p.K2K	GATGAAACGCCAT	.	215	67	209	0	.	130	G	46844301	A	G	46844301	2	3	27	1	0	0	0	0	0	0	0	1	11827	40	2	2		2	PHF16	23	46844301	Silent	SNP	A	TCGA-CC-5262-01A-01D-A12Z-10	6272135	46844301	108426259	138	3168											
ATP1B4	23439	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119505028	119505028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1B4	NM_001142447	exon4	c.G525T	p.W175C	CACTTGGCAGCAT	.	146	55	96	1	.	131	T	119505028	G	T	119505028	3	4	27	1	0	0	0	0	1	0	0	0	1135	1212	42	3	539	3	ATP1B4	23	119505028	Missense_Mutation	SNP	G	TCGA-CC-5262-01A-01D-A12Z-10	72660727	119505028	35765532	139	3169											
RPS4Y2	140032	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	22941543	22941543	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001039567	exon6	c.C681T	p.V227V	TTTTGTCATTGGC	.	305	128	339	0	.	.	T	22941543	C	T	22941543	2	4	27	1	0	0	0	0	0	0	0	1	13647	813	29	3		3	RPS4Y2	24	22941543	Silent	SNP	C	TCGA-CC-5262-01A-01D-A12Z-10		22941543	36432023	140	3170											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21231426	21231426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF4G3	NM_001198802	exon13	c.C1552T	p.P518S	CTTTTGGTTTCTT	.	393	144	372	0	.	91	A	21231426	G	A	21231426	3	1	28	1	0	0	0	0	1	0	0	0	5038	1261	44	3	3315	3	EIF4G3	1	21231426	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		21231426	228019195	1	3171											
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47610101	47610101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYP4A22	NM_001010969	exon7	c.A863G	p.H288R	AGAGGCACTTGGA	.	435	176	325	1	.	139	G	47610101	A	G	47610101	3	3	28	1	0	0	0	0	1	0	0	0	4184	159	6	2	889	2	CYP4A22	1	47610101	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	26378675	47610101	201640520	2	3172											
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71512812	71512812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTGER3	NM_001126044	exon1	c.C449T	p.A150V	GCCATGGCGCTGG	.	51	24	24	0	.	660	A	71512812	G	A	71512812	3	1	28	1	0	0	0	0	1	0	0	0	12744	1203	42	3	1042	3	PTGER3	1	71512812	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	23902711	71512812	177737809	3	3173											
FPGT	8790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74671212	74671212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FPGT	NM_003838	exon4	c.G1481T	p.G494V	TCTTTGGAGTCTG	.	206	72	214	1	.	91	T	74671212	G	T	74671212	3	4	28	1	0	0	0	0	1	0	0	0	6037	1174	41	3	1495	3	FPGT	1	74671212	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	3158400	74671212	174579409	4	3174											
STXBP3	6814	ucsc.edu;bcgsc.ca	37	1	109340798	109340798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon16	c.G1388T	p.R463L	AGGATCGGTCTGC	.	600	246	533	2	.	93	T	109340798	G	T	109340798	3	4	28	1	0	0	0	0	1	0	0	0	15353	1116	39	1	1450	1	STXBP3	1	109340798	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	34669586	109340798	139909823	5	3175	24	2									
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109340799	109340799	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon16	c.G1389T	p.R463R	GGATCGGTCTGCA	.	598	245	536	1	.	93	T	109340799	G	T	109340799	2	4	28	1	0	0	0	0	0	0	0	1	15353	1248	44	3		3	STXBP3	1	109340799	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	1	109340799	139909822	6	3176	24	2									
SYT6	148281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114646254	114646254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYT6	NM_205848	exon4	c.C906A	p.N302K	CTTGAGGTTCCGA	.	83	39	76	0	.	94	T	114646254	G	T	114646254	3	4	28	1	0	0	0	0	1	0	0	0	15475	1252	44	3	387	3	SYT6	1	114646254	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	5305455	114646254	134604367	7	3177											
BCL9	607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147092307	147092307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BCL9	NM_004326	exon8	c.A2346T	p.R782S	CCCCAGACCATTC	.	120	33	66	1	.	707	T	147092307	A	T	147092307	3	4	28	1	0	0	0	0	1	0	0	0	1381	272	10	4	2364	4	BCL9	1	147092307	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	32446053	147092307	102158314	8	3178											
PGLYRP4	57115	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153314164	153314164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PGLYRP4	NM_020393	exon6	c.G564T	p.Q188H	AAGTGGCTGAACA	.	132	55	77	1	.	94	A	153314164	C	A	153314164	3	1	28	1	0	0	0	0	1	0	0	0	11796	796	28	3	573	3	PGLYRP4	1	153314164	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	6221857	153314164	95936457	9	3179											
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154033436	154033436	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUP210L	NM_001159484	exon19	c.T2730C	p.Y910Y	GTGGTTATAGATG	.	324	118	262	0	.	77	G	154033436	A	G	154033436	2	3	28	1	0	0	0	0	0	0	0	1	10761	456	16	2		2	NUP210L	1	154033436	Silent	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	719272	154033436	95217185	10	3180											
PMVK	10654	hgsc.bcm.edu;bcgsc.ca	37	1	154904884	154904884	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PMVK	NM_006556	exon2	c.G103C	p.A35P	CATCAGCTCCAAG	.	259	14	179	0	.	115	G	154904884	C	G	154904884	3	3	28	1	0	0	0	0	1	0	0	0	12144	797	28	4	491	4	PMVK	1	154904884	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	871448	154904884	94345737	11	3181											
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158817665	158817665	+	Missense_Mutation	SNP	C	C	A	rs139902913	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MNDA	NM_002432	exon6	c.C1135A	p.R379S	GTTGACCGCAAGC	.	145	58	127	0	C|1.000;T|0.000	94	A	158817665	C	A	158817665	3	1	28	1	0	0	0	0	1	0	0	0	9676	652	23	1	1153	1	MNDA	1	158817665	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	3912781	158817665	90432956	12	3182											
TBX19	9095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168262484	168262484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TBX19	NM_005149	exon3	c.T571C	p.F191L	ACCCAGTTCATAG	.	126	52	67	0	.	90	C	168262484	T	C	168262484	3	2	28	1	0	0	0	0	1	0	0	0	15651	1725	60	2	581	2	TBX19	1	168262484	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	9444819	168262484	80988137	13	3183											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179603595	179603595	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TDRD5	NM_173533	exon8	c.A1130T	p.Q377L	TAGTTCAGTCAGA	.	184	73	183	0	.	94	T	179603595	A	T	179603595	3	4	28	1	0	0	0	0	1	0	0	0	15730	188	7	4	1156	4	TDRD5	1	179603595	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	11341111	179603595	69647026	14	3184											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245847619	245847619	+	Silent	SNP	G	G	A	rs201075952		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF26B	NM_018012	exon11	c.G2343A	p.A781A	GGCCGCGGTCGGG	.	124	42	68	0	G|0.999;A|0.001	25	A	245847619	G	A	245847619	2	1	28	1	0	0	0	0	0	0	0	1	8295	1103	39	1		1	KIF26B	1	245847619	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	66244024	245847619	3403002	15	3185											
SCCPDH	51097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246923373	246923373	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SCCPDH	NM_016002	exon8	c.A928T	p.I310L	CTTCTCATAAAAG	.	934	323	854	1	.	91	T	246923373	A	T	246923373	3	4	28	1	0	0	0	0	1	0	0	0	13885	217	8	4	958	4	SCCPDH	1	246923373	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	1075754	246923373	2327248	16	3186											
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74327943	74327943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_144993	exon9	c.A3623T	p.Q1208L	CCAGCCAGGCTGT	.	69	27	46	0	.	.	T	74327943	A	T	74327943	3	4	28	1	0	0	0	0	1	0	0	0	15768	188	7	4	3657	4	TET3	2	74327943	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10		74327943	168871430	17	3187											
DOK1	1796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74783904	74783904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DOK1	NM_001381	exon5	c.C1109A	p.P370Q	TGGCCCCAGTCCC	.	113	36	82	2	.	226	A	74783904	C	A	74783904	3	1	28	1	0	0	0	0	1	0	0	0	4696	594	21	3	1127	3	DOK1	2	74783904	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	455961	74783904	168415469	18	3188											
NCKAP5	344148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133547663	133547663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_207481	exon13	c.G1025T	p.S342I	CAGGTGCTTGAAA	.	159	73	120	1	.	.	A	133547663	C	A	133547663	3	1	28	1	0	0	0	0	1	0	0	0	10223	797	28	3	4736	3	NCKAP5	2	133547663	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	58763759	133547663	109651710	19	3189											
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	157186659	157186659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NR4A2	NM_006186	exon3	c.G40A	p.G14R	TGGCTCCTTGAGG	.	147	38	122	0	.	189	T	157186659	C	T	157186659	3	4	28	1	0	0	0	0	1	0	0	0	10633	690	24	3	1780	3	NR4A2	2	157186659	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	23638996	157186659	86012714	20	3190											
MYO3B	140469	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171242774	171242774	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYO3B	NM_001083615	exon13	c.T1366C	p.L456L	ACTTTCTTGGGAA	.	371	129	296	2	.	530	C	171242774	T	C	171242774	2	2	28	1	0	0	0	0	0	0	0	1	10077	1606	56	2		2	MYO3B	2	171242774	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	14056115	171242774	71956599	21	3191											
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	177017653	177017653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HOXD4	NM_014621	exon2	c.G751C	p.D251H	CACACGGACCTGA	.	138	52	86	0	.	91	C	177017653	G	C	177017653	3	2	28	1	0	0	0	0	1	0	0	0	7324	1174	41	4	757	4	HOXD4	2	177017653	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	5774879	177017653	66181720	22	3192											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179419703	179419703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTN	NM_001267550	exon331	c.C88483T	p.L29495F	ATGCGAGGTCCGT	.	198	79	150	0	.	636	A	179419703	G	A	179419703	3	1	28	1	0	0	0	0	1	0	0	0	16732	1000	35	3	19624	3	TTN	2	179419703	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	2402050	179419703	63779670	23	3193											
CCDC108	255101	bcgsc.ca;mdanderson.org	37	2	219893116	219893116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CCDC108	NM_194302	exon12	c.T1658C	p.L553P	AGGAACAGTGGGT	.	224	88	139	2	.	94	G	219893116	A	G	219893116	3	3	28	1	0	0	0	0	1	0	0	0	2743	188	7	2	4215	2	CCDC108	2	219893116	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	40473413	219893116	23306257	24	3194											
MLPH	79083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238449167	238449167	+	Silent	SNP	G	G	A	rs202229121		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLPH	NM_024101	exon10	c.G1281A	p.A427A	CCAGGCGGACCCG	.	25	14	21	0	G|0.999;A|0.000	91	A	238449167	G	A	238449167	2	1	28	1	0	0	0	0	0	0	0	1	9633	1103	39	1		1	MLPH	2	238449167	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	18556051	238449167	4750206	25	3195											
SEPT2	4735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242275425	242275425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEPT2	NM_001008491	exon6	c.A253G	p.T85A	GCTTCAACTGTTG	.	200	77	153	1	.	68	G	242275425	A	G	242275425	3	3	28	1	0	0	0	0	1	0	0	0	14064	43	2	2	267	2	SEPT2	2	242275425	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	3826258	242275425	923948	26	3196											
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	39171742	39171742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTC21A	NM_145755	exon17	c.G2233T	p.E745X	CAGCCCGAGAAGG	.	63	42	77	0	.	91	T	39171742	G	T	39171742	4	4	28	1	0	0	0	0	0	1	0	0	16684	1059	37	1	2302	1	TTC21A	3	39171742	Nonsense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		39171742	158850688	27	3197											
EIF4E3	317649	ucsc.edu;bcgsc.ca	37	3	71748795	71748795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF4E3	NM_001134651	exon3	c.A314G	p.H105R	ATTAAATGATAAC	.	50	5	72	0	.	90	C	71748795	T	C	71748795	3	2	28	1	0	0	0	0	1	0	0	0	5031	1464	51	2	380	2	EIF4E3	3	71748795	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	32577053	71748795	126273635	28	3198											
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	C	G	rs148365070	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZIC4	NM_001168378	exon2	c.G200C	p.R67P	GTGTTTCGGTAAA	.	191	65	181	0	C|0.999;T|0.001	91	G	147120535	C	G	147120535	3	3	28	1	0	0	0	0	1	0	0	0	17678	884	31	4	970	4	ZIC4	3	147120535	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	75371740	147120535	50901895	29	3199											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183667834	183667834	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCC5	NM_005688	exon21	c.A3024T	p.A1008A	GACTCCTGCGATC	.	143	45	105	0	.	137	A	183667834	T	A	183667834	2	1	28	1	0	0	0	0	0	0	0	1	56	1567	55	4		4	ABCC5	3	183667834	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	36547299	183667834	14354596	30	3200											
ZNF141	7700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	367384	367397	+	Frame_Shift_Del	DEL	AAAAATTCATACTG	AAAAATTCATACTG	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	AAAAATTCATACTG	AAAAATTCATACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF141	NM_003441	exon4	c.1158_1171del	p.386_391del	ACATAAAAAAATT	.	130	0	112	0	.	90	-	367397	AAAAATTCATACTG	-	367384	7	5	28	1	0	1	0	1	0	0	0	0	17727	11	1	0	1172	0	ZNF141	4	367384	Frame_Shift_Del	DEL	AAAAATTCATACTG	TCGA-CC-5263-01A-01D-A12Z-10		367384	190786892	31	3201											
FGFBP1	9982	ucsc.edu;bcgsc.ca	37	4	15937856	15937856	+	Missense_Mutation	SNP	C	C	T	rs143214990	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGFBP1	NM_005130	exon3	c.G400A	p.V134M	TTTTCACAGCTGT	.	445	181	397	2	C|0.999;G|0.001	90	T	15937856	C	T	15937856	3	4	28	1	0	0	0	0	1	0	0	0	5860	478	17	3	308	3	FGFBP1	4	15937856	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	15570472	15937856	175216420	32	3202											
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56846403	56846403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP135	NM_025009	exon12	c.A1568T	p.Q523L	ATATACAGTCCAA	.	432	168	502	0	.	94	T	56846403	A	T	56846403	3	4	28	1	0	0	0	0	1	0	0	0	3247	188	7	4	1610	4	CEP135	4	56846403	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	40908547	56846403	134307873	33	3203											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123274094	123274094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA1109	NM_015312	exon79	c.G13885A	p.V4629I	CCTGGAGTATTGA	.	152	52	121	0	.	80	A	123274094	G	A	123274094	3	1	28	1	0	0	0	0	1	0	0	0	8208	1029	36	3	14199	3	KIAA1109	4	123274094	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	66427691	123274094	67880182	34	3204											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158262498	158262499	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.A643N	TTAGCTGCCTTCC	.	608	231	639	0	.	.	AA	158262499	GC	AA	158262498	3	1	28	1	0	0	0	0	1	0	0	0	6768	1319	46	3	1973	3	GRIA2	4	158262498	Missense_Mutation	DNP	GC	TCGA-CC-5263-01A-01D-A12Z-10	34988404	158262498	32891778	35	3205											
FNIP2	57600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159790073	159790073	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FNIP2	NM_020840	exon13	c.A2285T	p.Q762L	ACCCGCAGGTTTC	.	99	39	59	1	.	68	T	159790073	A	T	159790073	3	4	28	1	0	0	0	0	1	0	0	0	5976	188	7	4	2335	4	FNIP2	4	159790073	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	1527575	159790073	31364203	36	3206											
RXFP3	51289	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	33937817	33937817	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RXFP3	NM_016568	exon1	c.C972A	p.V324V	GAAGGTCACCAAA	.	170	102	58	2	.	91	A	33937817	C	A	33937817	2	1	28	1	0	0	0	0	0	0	0	1	13761	813	29	3		3	RXFP3	5	33937817	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10		33937817	146977443	37	3207											
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36684073	36684073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC1A3	NM_004172	exon9	c.C1397T	p.T466M	ACATCACGCTCAT	.	383	87	173	0	.	90	T	36684073	C	T	36684073	3	4	28	1	0	0	0	0	1	0	0	0	14433	536	19	1	1444	1	SLC1A3	5	36684073	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	2746256	36684073	144231187	38	3208											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38427282	38427282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EGFLAM	NM_001205301	exon14	c.T1982A	p.F661Y	AAGACTTCCTGTC	.	165	43	104	0	.	187	A	38427282	T	A	38427282	3	1	28	1	0	0	0	0	1	0	0	0	4966	1783	62	4	2050	4	EGFLAM	5	38427282	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	1743209	38427282	142487978	39	3209											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	89910835	89910835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GPR98	NM_032119	exon2	c.C206A	p.S69X	TTGTATCGGTAAG	.	110	63	227	0	.	103	A	89910835	C	A	89910835	4	1	28	1	0	0	0	0	0	1	0	0	6721	898	31	1	212	1	GPR98	5	89910835	Nonsense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	51483553	89910835	91004425	40	3210											
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168127670	168127670	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLIT3	NM_001271946	exon27	c.T2880C	p.T960T	GGGCACAGTGCAG	.	176	60	153	1	.	95	G	168127670	A	G	168127670	2	3	28	1	0	0	0	0	0	0	0	1	14741	175	7	2		2	SLIT3	5	168127670	Silent	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	78216835	168127670	12787590	41	3211											
LCP2	3937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169697820	169697820	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LCP2	NM_005565	exon7	c.C426T	p.D142D	ATCCGCGTCATCT	.	348	124	242	1	.	23	A	169697820	G	A	169697820	2	1	28	1	0	0	0	0	0	0	0	1	8692	1136	40	1		1	LCP2	5	169697820	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	1570150	169697820	11217440	42	3212											
RNF182	221687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13977395	13977395	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RNF182	NM_001165032	exon4	c.T45C	p.S15S	GGCCTCTGATGAG	.	193	85	113	0	.	586	C	13977395	T	C	13977395	2	2	28	1	0	0	0	0	0	0	0	1	13466	1567	55	2		2	RNF182	6	13977395	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10		13977395	157137672	43	3213											
BTN2A2	10385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26390936	26390936	+	Splice_Site	SNP	G	G	A	rs200463511		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BTN2A2	NM_001197238	exon6	c.952+1G>A	.	AATTGCGTAAGTT	.	694	199	513	2	G|0.999;A|0.001	90	A	26390936	G	A	26390936	5	1	28	1	0	0	0	0	0	0	1	0	1561	1159	40	1	971	1	BTN2A2	6	26390936	Splice_Site	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	12413541	26390936	144724131	44	3214											
PPARD	5467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35378867	35378867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPARD	NM_001171818	exon4	c.G3T	p.M1I	AGCCATGGAGCAG	.	129	38	81	0	.	187	T	35378867	G	T	35378867	3	4	28	1	0	0	0	0	1	0	0	0	12298	1348	47	3	22	3	PPARD	6	35378867	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	8987931	35378867	135736200	45	3215											
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024218	76024218	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FILIP1	NM_015687	exon5	c.A1330T	p.K444X	TACTCTTGCTAAA	.	662	328	457	1	.	94	A	76024218	T	A	76024218	4	1	28	1	0	0	0	0	0	1	0	0	5894	1821	63	4	2319	4	FILIP1	6	76024218	Nonsense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	40645351	76024218	95090849	46	3216											
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139694674	139694675	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.P136Q	CAAATCCGGCATG	.	288	141	154	0	.	.	TT	139694675	CG	TT	139694674	3	4	28	1	0	0	0	0	1	0	0	0	3440	639	23	1	408	1	CITED2	6	139694674	Missense_Mutation	DNP	CG	TCGA-CC-5263-01A-01D-A12Z-10	63670456	139694674	31420393	47	3217											
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148867236	148867236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SASH1	NM_015278	exon19	c.T3434A	p.M1145K	CCAACATGGACCA	.	104	51	57	0	.	90	A	148867236	T	A	148867236	3	1	28	1	0	0	0	0	1	0	0	0	13848	1464	51	4	3508	4	SASH1	6	148867236	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	9172562	148867236	22247831	48	3218											
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155718096	155718096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NOX3	NM_015718	exon13	c.C1581A	p.S527R	ACTGCTGCTGCAG	.	159	38	77	0	.	91	T	155718096	G	T	155718096	3	4	28	1	0	0	0	0	1	0	0	0	10557	1333	46	3	129	3	NOX3	6	155718096	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	6850860	155718096	15396971	49	3219											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160454027	160454027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	IGF2R	NM_000876	exon9	c.G1099T	p.G367X	GTCTGTGGAGAAA	.	197	59	143	0	.	118	T	160454027	G	T	160454027	4	4	28	1	0	0	0	0	0	1	0	0	7576	1349	47	3	1133	3	IGF2R	6	160454027	Nonsense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	4735931	160454027	10661040	50	3220											
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165846593	165846593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDE10A	NM_001130690	exon7	c.G562C	p.G188R	CCAGTCCAGTACC	.	323	84	231	0	.	519	G	165846593	C	G	165846593	3	3	28	1	0	0	0	0	1	0	0	0	11630	603	21	4	1871	4	PDE10A	6	165846593	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	5392566	165846593	5268474	51	3221											
MLLT4	4301	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168271129	168271129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLLT4	NM_001207008	exon3	c.G365A	p.R122Q	ATGATCGGGAAGG	.	234	23	160	2	.	685	A	168271129	G	A	168271129	3	1	28	1	0	0	0	0	1	0	0	0	9629	1116	39	1	375	1	MLLT4	6	168271129	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	2424536	168271129	2843938	52	3222											
AOAH	313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	36633945	36633945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AOAH	NM_001637	exon12	c.G938A	p.G313E	ACTTACCCAACAG	.	213	12	146	0	.	91	T	36633945	C	T	36633945	3	4	28	1	0	0	0	0	1	0	0	0	726	637	22	3	1170	3	AOAH	7	36633945	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10		36633945	122504718	53	3223											
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65751568	65751568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TPST1	NM_003596	exon3	c.A916G	p.I306V	GGGAAGATACCGC	.	147	68	139	0	.	90	G	65751568	A	G	65751568	3	3	28	1	0	0	0	0	1	0	0	0	16424	333	12	2	922	2	TPST1	7	65751568	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	29117623	65751568	93387095	54	3224											
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71571275	71571275	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CALN1	NM_031468	exon4	c.C249A	p.I83I	CTCTCGGATTTCT	.	56	20	45	0	.	91	T	71571275	G	T	71571275	2	4	28	1	0	0	0	0	0	0	0	1	2591	1164	41	3		3	CALN1	7	71571275	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	5819707	71571275	87567388	55	3225											
YWHAG	7532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75959524	75959524	+	Silent	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	YWHAG,NS,carcinoma,-1	YWHAG	NM_012479	exon2	c.G114C	p.S38S	CTCATTCGACAGT	.	56	27	36	0	.	523	G	75959524	C	G	75959524	2	3	28	1	0	0	0	0	0	0	0	1	17500	871	31	4		4	YWHAG	7	75959524	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	4388249	75959524	83179139	56	3226											
SEMA3C	10512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80432006	80432006	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEMA3C	NM_006379	exon9	c.C891A	p.G297G	TTCTGGGCCGTCT	.	173	62	148	1	.	515	T	80432006	G	T	80432006	2	4	28	1	0	0	0	0	0	0	0	1	14026	1190	42	3		3	SEMA3C	7	80432006	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	4472482	80432006	78706657	57	3227											
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99693701	99693701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MCM7	NM_005916	exon11	c.G1291T	p.G431C	CCCCACCCTCTAA	.	94	35	69	0	.	651	A	99693701	C	A	99693701	3	1	28	1	0	0	0	0	1	0	0	0	9392	623	22	3	888	3	MCM7	7	99693701	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	19261695	99693701	59444962	58	3228											
NOM1	64434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156743259	156743259	+	Silent	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NOM1	NM_138400	exon1	c.A828T	p.A276A	GGAAGCAGAAGCG	.	132	57	101	1	.	90	T	156743259	A	T	156743259	2	4	28	1	0	0	0	0	0	0	0	1	10530	175	7	4		4	NOM1	7	156743259	Silent	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	57049558	156743259	2395404	59	3229											
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16853235	16853235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGF20	NM_019851	exon2	c.C319A	p.L107M	TGACCAGTCCCAC	.	103	56	152	0	.	522	T	16853235	G	T	16853235	3	4	28	1	0	0	0	0	1	0	0	0	5849	1020	36	3	324	3	FGF20	8	16853235	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		16853235	129510787	60	3230											
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139736902	139736902	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COL22A1	NM_152888	exon25	c.G2203T	p.G735X	TCTCTCCAGGCAA	.	45	10	38	1	.	103	A	139736902	C	A	139736902	4	1	28	1	0	0	0	0	0	1	0	0	3681	603	21	3	2841	3	COL22A1	8	139736902	Nonsense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	122883667	139736902	6627120	61	3231											
KIAA2026	158358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5922996	5922996	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA2026	NM_001017969	exon8	c.G3000A	p.Q1000Q	CCCTTTCTGGAGA	.	356	112	316	2	.	92	T	5922996	C	T	5922996	2	4	28	1	0	0	0	0	0	0	0	1	8270	912	32	3		3	KIAA2026	9	5922996	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10		5922996	135290435	62	3232											
PPP2R4	5524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131909700	131909700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP2R4	NM_178001	exon11	c.A1034G	p.K345R	ACTTCAAGTTCGG	.	88	44	43	0	.	660	G	131909700	A	G	131909700	3	3	28	1	0	0	0	0	1	0	0	0	12391	72	3	2	1076	2	PPP2R4	9	131909700	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	125986704	131909700	9303731	63	3233	25	2									
PPP2R4	5524	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131909703	131909703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP2R4	NM_178001	exon11	c.T1037C	p.F346S	TCAAGTTCGGGAG	.	87	45	40	1	.	660	C	131909703	T	C	131909703	3	2	28	1	0	0	0	0	1	0	0	0	12391	1783	62	2	1079	2	PPP2R4	9	131909703	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	3	131909703	9303728	64	3234	25	2									
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27459791	27459791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MASTL	NM_032844	exon8	c.A1903T	p.M635L	CAAAAAATGTTAG	.	139	49	110	0	.	522	T	27459791	A	T	27459791	3	4	28	1	0	0	0	0	1	0	0	0	9328	101	4	4	1933	4	MASTL	10	27459791	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10		27459791	108074956	65	3235											
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50732464	50732464	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ERCC6	NM_000124	exon5	c.A1012T	p.K338X	AAGCCCTCTTCTG	.	985	364	736	2	.	1153	A	50732464	T	A	50732464	4	1	28	1	0	0	0	0	0	1	0	0	5217	1550	54	4	3537	4	ERCC6	10	50732464	Nonsense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	23272673	50732464	84802283	66	3236											
SLC22A18	5002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2939298	2939298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC22A18	NM_002555	exon7	c.G736T	p.V246L	TTCCTGGTGAAGG	.	151	46	105	1	.	92	T	2939298	G	T	2939298	3	4	28	1	0	0	0	0	1	0	0	0	14449	1261	44	3	758	3	SLC22A18	11	2939298	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		2939298	132067218	67	3237											
OR5M10	390167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56345082	56345082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001004741	exon1	c.T116A	p.L39Q	CCTGCCAGTGTGA	.	508	195	418	2	.	.	T	56345082	A	T	56345082	3	4	28	1	0	0	0	0	1	0	0	0	11173	188	7	4	835	4	OR5M10	11	56345082	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	53405784	56345082	78661434	68	3238											
OR10V1	390201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	59481145	59481145	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR10V1	NM_001005324	exon1	c.C174A	p.P58P	GTACATGGGGGTG	.	231	10	167	0	.	68	T	59481145	G	T	59481145	2	4	28	1	0	0	0	0	0	0	0	1	10920	1335	47	3		3	OR10V1	11	59481145	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	3136063	59481145	75525371	69	3239											
NUMA1	4926	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71721833	71721833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUMA1	NM_006185	exon17	c.A4718C	p.K1573T	CCCACCTTCAGCT	.	46	16	26	0	.	633	G	71721833	T	G	71721833	3	3	28	1	0	0	0	0	1	0	0	0	10750	1623	56	5	1673	5	NUMA1	11	71721833	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	12240688	71721833	63284683	70	3240											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	668557	668557	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	B4GALNT3	NM_173593	exon19	c.G2858A	p.W953X	ACCGCTGGGGCGG	.	93	34	69	0	.	92	A	668557	G	A	668557	4	1	28	1	0	0	0	0	0	1	0	0	1268	1357	47	3	2932	3	B4GALNT3	12	668557	Nonsense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		668557	133183338	71	3241											
KRT78	196374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53237937	53237937	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT78	NM_173352	exon6	c.C987T	p.I329I	CTGAGAGATCTGG	.	402	152	289	0	.	188	A	53237937	G	A	53237937	2	1	28	1	0	0	0	0	0	0	0	1	8491	932	33	3		3	KRT78	12	53237937	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	52569380	53237937	80613958	72	3242											
OR6C75	390323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55759521	55759521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR6C75	NM_001005497	exon1	c.G627T	p.L209F	CACCTTGACATTA	.	466	174	406	1	.	70	T	55759521	G	T	55759521	3	4	28	1	0	0	0	0	1	0	0	0	11199	1281	45	3	629	3	OR6C75	12	55759521	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	2521584	55759521	78092374	73	3243											
TNFRSF19	55504	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24243206	24243206	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TNFRSF19	NM_018647	exon9	c.C1215A	p.V405V	TGCTGTCATCCAC	.	145	37	65	1	.	228	A	24243206	C	A	24243206	2	1	28	1	0	0	0	0	0	0	0	1	16289	813	29	3		3	TNFRSF19	13	24243206	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10		24243206	90926672	74	3244											
KL	9365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33638123	33638123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KL	NM_004795	exon5	c.A2839G	p.I947V	AGGAAAATTATTG	.	225	51	322	0	.	155	G	33638123	A	G	33638123	3	3	28	1	0	0	0	0	1	0	0	0	8331	101	4	2	2857	2	KL	13	33638123	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	9394917	33638123	81531755	75	3245											
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36050192	36050193	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.A28E	AGTTTTGGCAATG	.	56	35	82	0	.	.	TT	36050193	GG	TT	36050192	3	4	28	1	0	0	0	0	1	0	0	0	9141	1335	47	3	999	3	MAB21L1	13	36050192	Missense_Mutation	DNP	GG	TCGA-CC-5263-01A-01D-A12Z-10	2412069	36050192	79119686	76	3246											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101717813	101717813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NALCN	NM_052867	exon40	c.G4547A	p.C1516Y	TCGTAGCACATGT	.	130	42	64	0	.	167	T	101717813	C	T	101717813	3	4	28	1	0	0	0	0	1	0	0	0	10148	710	25	3	689	3	NALCN	13	101717813	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	65667621	101717813	13452065	77	3247											
OR4M1	441670	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20249422	20249422	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR4M1	NM_001005500	exon1	c.G941A	p.X314X	AGAAGTGAAAGAT	.	554	98	494	1	.	68	A	20249422	G	A	20249422	2	1	28	1	0	0	0	0	0	0	0	1	11075	1304	45	3		3	OR4M1	14	20249422	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		20249422	87100118	78	3248											
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21878045	21878045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CHD8	NM_001170629	exon10	c.C2329T	p.R777W	GAATCCGTTTAAA	.	311	30	331	0	.	277	A	21878045	G	A	21878045	3	1	28	1	0	0	0	0	1	0	0	0	3331	1144	40	1	5528	1	CHD8	14	21878045	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	1628623	21878045	85471495	79	3249											
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23902387	23902387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYH7	NM_000257	exon4	c.T251C	p.F84S	TTGTCGAACTTGG	.	288	111	248	2	.	94	G	23902387	A	G	23902387	3	3	28	1	0	0	0	0	1	0	0	0	10039	246	9	2	5704	2	MYH7	14	23902387	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	2024342	23902387	83447153	80	3250											
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24727745	24727745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM1	NM_000359	exon8	c.G1294T	p.V432F	ACCAGACAGAATC	.	338	108	277	1	.	91	A	24727745	C	A	24727745	3	1	28	1	0	0	0	0	1	0	0	0	15826	478	17	3	1191	3	TGM1	14	24727745	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	825358	24727745	82621795	81	3251											
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24730963	24730963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM1	NM_000359	exon3	c.T446C	p.M149T	AGGAGCATATGGA	.	253	84	181	1	.	91	G	24730963	A	G	24730963	3	3	28	1	0	0	0	0	1	0	0	0	15826	217	8	2	2059	2	TGM1	14	24730963	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	3218	24730963	82618577	82	3252											
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93483123	93483123	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ITPK1	NM_001142593	exon4	c.G144A	p.E48E	CTGCTCCTCGATC	.	71	34	47	0	.	115	T	93483123	C	T	93483123	2	4	28	1	0	0	0	0	0	0	0	1	7916	680	24	3		3	ITPK1	14	93483123	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	68752160	93483123	13866417	83	3253											
RCOR1	23186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103174914	103174914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RCOR1	NM_015156	exon6	c.A773G	p.E258G	AGCGGGAGGAGAG	.	95	29	83	1	.	91	G	103174914	A	G	103174914	3	3	28	1	0	0	0	0	1	0	0	0	13182	304	11	2	786	2	RCOR1	14	103174914	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	9691791	103174914	4174626	84	3254											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52638630	52638630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYO5A	NM_000259	exon30	c.3887delT	p.L1296fs	TCTTCCAAAAGTA	.	274	107	280	0	.	93	-	52638630	A	-	52638630	7	5	28	1	0	1	0	1	0	0	0	0	10078	131	5	0	1728	0	MYO5A	15	52638630	Frame_Shift_Del	DEL	A	TCGA-CC-5263-01A-01D-A12Z-10		52638630	49892762	85	3255											
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102359072	102359072	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR4F15	NM_001001674	exon1	c.A683T	p.H228L	GGAAACATTCTTC	.	989	257	611	0	.	68	T	102359072	A	T	102359072	3	4	28	1	0	0	0	0	1	0	0	0	11061	217	8	4	685	4	OR4F15	15	102359072	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	49720442	102359072	172320	86	3256											
PDXDC1	23042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	15126797	15126797	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDXDC1	NM_015027	exon18	c.A1651T	p.K551X	CTGAAGAAGTTAA	.	138	52	124	0	.	91	T	15126797	A	T	15126797	4	4	28	1	0	0	0	0	0	1	0	0	11696	247	9	4	1721	4	PDXDC1	16	15126797	Nonsense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10		15126797	75227956	87	3257											
CD19	930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28946809	28946809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CD19	NM_001178098	exon5	c.G880A	p.A294T	GTCTCAGCTGTGA	.	607	217	394	2	.	92	A	28946809	G	A	28946809	3	1	28	1	0	0	0	0	1	0	0	0	2973	971	34	3	898	3	CD19	16	28946809	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	13820012	28946809	61407944	88	3258											
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29001267	29001267	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LAT	NM_001014989	exon12	c.C744A	p.S248S	GAGTTCCCAGGAG	.	161	53	95	0	.	44	A	29001267	C	A	29001267	2	1	28	1	0	0	0	0	0	0	0	1	8644	610	22	3		3	LAT	16	29001267	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	54458	29001267	61353486	89	3259											
MYLK3	91807	hgsc.bcm.edu;mdanderson.org	37	16	46766546	46766546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYLK3	NM_182493	exon4	c.G1036A	p.G346R	TCTCCCCAGGAGT	.	18	14	8	0	.	374	T	46766546	C	T	46766546	3	4	28	1	0	0	0	0	1	0	0	0	10058	594	21	3	1463	3	MYLK3	16	46766546	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	17765279	46766546	43588207	90	3260											
TMEM170A	124491	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75485578	75485578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM170A	NM_145254	exon2	c.G293A	p.G98E	AAGATTCCAGCAG	.	67	37	88	0	.	68	T	75485578	C	T	75485578	3	4	28	1	0	0	0	0	1	0	0	0	16083	855	30	3	149	3	TMEM170A	16	75485578	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	28719032	75485578	14869175	91	3261											
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7129551	7129551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DVL2	NM_004422	exon15	c.A1844C	p.K615T	CCGGACTTGGACT	.	25	14	14	0	.	659	G	7129551	T	G	7129551	3	3	28	1	0	0	0	0	1	0	0	0	4836	1609	56	5	370	5	DVL2	17	7129551	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10		7129551	74065659	92	3262											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577107	7577107	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	TP53,NS,carcinoma,-2	TP53	NM_000546	exon8	c.T831A	p.C277X	CCCAGGACAGGCA	.	65	47	87	0	.	70225	T	7577107	A	T	7577107	4	4	28	1	0	0	0	0	0	1	0	0	16378	273	10	4	455	4	TP53	17	7577107	Nonsense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	447556	7577107	73618103	93	3263											
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29119458	29119458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CRLF3	NM_015986	exon6	c.G959A	p.R320K	ACTTGCCTGAATG	.	131	46	116	0	.	90	T	29119458	C	T	29119458	3	4	28	1	0	0	0	0	1	0	0	0	3888	695	24	3	381	3	CRLF3	17	29119458	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	21542351	29119458	52075752	94	3264											
SLFN11	91607	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33690385	33690385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLFN11	NM_152270	exon2	c.G442T	p.A148S	AGAATGCCTCTCT	.	142	42	133	2	.	159	A	33690385	C	A	33690385	3	1	28	1	0	0	0	0	1	0	0	0	14733	739	26	3	2279	3	SLFN11	17	33690385	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	4570927	33690385	47504825	95	3265											
KRT28	162605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38955214	38955214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT28	NM_181535	exon2	c.T488C	p.L163P	ATCTGCAGAATGA	.	782	217	595	0	.	91	G	38955214	A	G	38955214	3	3	28	1	0	0	0	0	1	0	0	0	8465	188	7	2	934	2	KRT28	17	38955214	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	5264829	38955214	42239996	96	3266											
FAM134C	162427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40733882	40733889	+	Frame_Shift_Del	DEL	CAGAAGTT	CAGAAGTT	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	CAGAAGTT	CAGAAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAM134C	NM_178126	exon9	c.1343_1350del	p.448_450del	CTGGTCCAGAAGT	.	98	22	47	0	.	70	-	40733889	CAGAAGTT	-	40733882	7	5	28	1	0	1	0	1	0	0	0	0	5447	581	21	0	54	0	FAM134C	17	40733882	Frame_Shift_Del	DEL	CAGAAGTT	TCGA-CC-5263-01A-01D-A12Z-10	1778668	40733882	40461328	97	3267											
MPP2	4355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41958848	41958848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MPP2	NM_005374	exon7	c.A791C	p.Q264P	TCATCCTGGTTTA	.	105	30	55	0	.	90	G	41958848	T	G	41958848	3	3	28	1	0	0	0	0	1	0	0	0	9734	1580	55	5	895	5	MPP2	17	41958848	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	1224966	41958848	39236362	98	3268											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57759022	57759022	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CLTC	NM_004859	exon21	c.T3264C	p.H1088H	TGAGCATATTGGA	.	179	93	147	0	.	835	C	57759022	T	C	57759022	2	2	28	1	0	0	0	0	0	0	0	1	3566	1403	49	2		2	CLTC	17	57759022	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	15800174	57759022	23436188	99	3269											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	72343926	72343926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF19	NM_153209	exon9	c.G935A	p.G312E	CTCTGGGAGGAAA	.	50	13	26	0	.	90	A	72343926	G	A	72343926	3	1	28	1	0	0	0	0	1	0	0	0	8282	1174	41	3	969	3	KIF19	17	72343926	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	14584904	72343926	8851284	100	3270											
ST6GALNAC1	55808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74625419	74625419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST6GALNAC1	NM_018414	exon2	c.G506A	p.G169D	GTCTGGCCCCCAT	.	670	201	345	2	.	90	T	74625419	C	T	74625419	3	4	28	1	0	0	0	0	1	0	0	0	15222	739	26	3	1328	3	ST6GALNAC1	17	74625419	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	2281493	74625419	6569791	101	3271											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039104	80039104	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FASN	NM_004104	exon38	c.C6531T	p.R2177R	CACCTCGCGCACG	.	113	68	43	0	.	90	A	80039104	G	A	80039104	2	1	28	1	0	0	0	0	0	0	0	1	5683	1074	38	1		1	FASN	17	80039104	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	5413685	80039104	1156106	102	3272											
RALBP1	10928	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	9535918	9535918	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RALBP1	NM_006788	exon10	c.A1951T	p.K651X	GATAGGAAGGAGA	.	153	52	75	1	.	522	T	9535918	A	T	9535918	4	4	28	1	0	0	0	0	0	1	0	0	13012	247	9	4	1985	4	RALBP1	18	9535918	Nonsense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10		9535918	68541330	103	3273											
MPPE1	65258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11889442	11889442	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MPPE1	NM_001242904	exon4	c.A438T	p.P146P	ATGACTTGGGTGT	.	203	50	135	0	.	90	A	11889442	T	A	11889442	2	1	28	1	0	0	0	0	0	0	0	1	9740	1799	63	4		4	MPPE1	18	11889442	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	2353524	11889442	66187806	104	3274											
CEP76	79959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12691398	12691398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP76	NM_024899	exon7	c.G893T	p.R298L	GAGGGTCGAATTT	.	205	101	162	1	.	90	A	12691398	C	A	12691398	3	1	28	1	0	0	0	0	1	0	0	0	3261	884	31	1	1110	1	CEP76	18	12691398	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	801956	12691398	65385850	105	3275											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	40854035	40854035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYT4	NM_020783	exon2	c.A359T	p.N120I	GTTGCATTCTCCA	.	329	105	207	0	.	132	A	40854035	T	A	40854035	3	1	28	1	0	0	0	0	1	0	0	0	15473	1493	52	4	930	4	SYT4	18	40854035	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	28162637	40854035	37223213	106	3276											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1051263	1051263	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCA7	NM_019112	exon20	c.A2794T	p.K932X	GTCTCCAAGCAGA	.	85	27	53	0	.	98	T	1051263	A	T	1051263	4	4	28	1	0	0	0	0	0	1	0	0	37	131	5	4	2868	4	ABCA7	19	1051263	Nonsense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10		1051263	58077720	107	3277											
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416830	6416830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KHSRP	NM_003685	exon13	c.G1246A	p.G416S	CTTGGCCTCTTCC	.	34	14	31	0	.	226	T	6416830	C	T	6416830	3	4	28	1	0	0	0	0	1	0	0	0	8151	681	24	3	921	3	KHSRP	19	6416830	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	5365567	6416830	52712153	108	3278											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9045799	9045799	+	Silent	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC16	NM_024690	exon5	c.C35832G	p.T11944T	TATCAAGGTCATA	.	455	148	313	0	.	566	C	9045799	G	C	9045799	2	2	28	1	0	0	0	0	0	0	0	1	9973	987	35	4		4	MUC16	19	9045799	Silent	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	2628969	9045799	50083184	109	3279											
ABHD8	79575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17412326	17412326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABHD8	NM_024527	exon2	c.A100T	p.T34S	CAAAGGTGTAGCC	.	49	23	26	0	.	90	A	17412326	T	A	17412326	3	1	28	1	0	0	0	0	1	0	0	0	87	1696	59	4	1235	4	ABHD8	19	17412326	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	8366527	17412326	41716657	110	3280											
TMEM59L	25789	broad.mit.edu;mdanderson.org	37	19	18731265	18731265	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM59L	NM_012109	exon8	c.G948A	p.W316X	CGATTGGCCCCTG	.	41	9	30	0	.	94	A	18731265	G	A	18731265	4	1	28	1	0	0	0	0	0	1	0	0	16183	1212	42	3	978	3	TMEM59L	19	18731265	Nonsense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	1318939	18731265	40397718	111	3281											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927768	23927768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_138286	exon4	c.T584A	p.V195E	AAATTTACTCTAG	.	202	77	280	0	.	.	T	23927768	A	T	23927768	3	4	28	1	0	0	0	0	1	0	0	0	18085	391	14	4	1357	4	ZNF681	19	23927768	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10	5196503	23927768	35201215	112	3282											
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44514563	44514563	+	Silent	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF230	NM_006300	exon5	c.C372G	p.S124S	CCCCTCCCAGGTT	.	134	95	193	0	.	90	G	44514563	C	G	44514563	2	3	28	1	0	0	0	0	0	0	0	1	17781	610	22	4		4	ZNF230	19	44514563	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	20586795	44514563	14614420	113	3283											
SULT2B1	6820	ucsc.edu;bcgsc.ca	37	19	49094943	49094943	+	Missense_Mutation	SNP	G	G	T	rs149312079	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SULT2B1	NM_177973	exon4	c.G501T	p.K167N	GTTAAAGGACCCG	.	52	6	45	0	G|0.998;A|0.002	91	T	49094943	G	T	49094943	3	4	28	1	0	0	0	0	1	0	0	0	15379	991	35	3	541	3	SULT2B1	19	49094943	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	4580380	49094943	10034040	114	3284											
PPP1R12C	54776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55606963	55606963	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP1R12C	NM_017607	exon10	c.A1236G	p.E412E	GGCCTCTTCAAGC	.	54	18	25	0	.	227	C	55606963	T	C	55606963	2	2	28	1	0	0	0	0	0	0	0	1	12356	1606	56	2		2	PPP1R12C	19	55606963	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	6512020	55606963	3522020	115	3285											
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55716907	55716907	+	Missense_Mutation	SNP	C	C	A	rs144055741	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTPRH	NM_002842	exon4	c.G406T	p.A136S	TCAGGGCGATGGA	.	396	156	255	0	C|1.000;T|0.000	138	A	55716907	C	A	55716907	3	1	28	1	0	0	0	0	1	0	0	0	12803	768	27	1	3009	1	PTPRH	19	55716907	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	109944	55716907	3412076	116	3286											
ZNF264	9422	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57723567	57723567	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF264	NM_003417	exon4	c.G1102T	p.E368X	ACCGGGGAGAAGC	.	192	77	172	1	.	92	T	57723567	G	T	57723567	4	4	28	1	0	0	0	0	0	1	0	0	17801	1175	41	3	1116	3	ZNF264	19	57723567	Nonsense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	2006660	57723567	1405416	117	3287											
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3669214	3669214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SIGLEC1	NM_023068	exon21	c.T5123A	p.L1708Q	CAGCCCAGGGGTG	.	107	44	81	0	.	167	T	3669214	A	T	3669214	3	4	28	1	0	0	0	0	1	0	0	0	14305	188	7	4	10	4	SIGLEC1	20	3669214	Missense_Mutation	SNP	A	TCGA-CC-5263-01A-01D-A12Z-10		3669214	59356306	118	3288											
C20orf26	26074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20056165	20056165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C20orf26	NM_015585	exon6	c.G472T	p.G158W	CAAGTGGGGAACA	.	169	69	161	1	.	94	T	20056165	G	T	20056165	3	4	28	1	0	0	0	0	1	0	0	0	2106	1232	43	3	490	3	C20orf26	20	20056165	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10	16386951	20056165	42969355	119	3289											
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45004003	45004003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ELMO2	NM_182764	exon12	c.A937G	p.R313G	TGTCCCTTTGAGC	.	206	76	152	0	.	91	C	45004003	T	C	45004003	3	2	28	1	0	0	0	0	1	0	0	0	5066	1608	56	2	1265	2	ELMO2	20	45004003	Missense_Mutation	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	24947838	45004003	18021517	120	3290											
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58444857	58444857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYCP2	NM_014258	exon35	c.3737delG	p.R1246fs	ACCTCTCTTTTGC	.	196	70	280	0	.	525	-	58444857	C	-	58444857	7	5	28	1	0	1	0	1	0	0	0	0	15429	913	32	0	895	0	SYCP2	20	58444857	Frame_Shift_Del	DEL	C	TCGA-CC-5263-01A-01D-A12Z-10	13440854	58444857	4580663	121	3291											
NPBWR2	2832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62737266	62737266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NPBWR2	NM_005286	exon1	c.G919A	p.A307T	AGTTGGCGTAGCT	.	73	28	71	0	.	153	T	62737266	C	T	62737266	3	4	28	1	0	0	0	0	1	0	0	0	10569	768	27	1	85	1	NPBWR2	20	62737266	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	4292409	62737266	288254	122	3292											
NF2	4771	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30050696	30050696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NF2	NM_000268	exon5	c.G498T	p.E166D	CCAAGAGGAATTG	.	268	117	229	2	.	4696	T	30050696	G	T	30050696	3	4	28	1	0	0	0	0	1	0	0	0	10357	991	35	3	516	3	NF2	22	30050696	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		30050696	21253870	123	3293											
ST13	6767	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41223190	41223190	+	Missense_Mutation	SNP	C	C	A	rs710193	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST13	NM_003932	exon11	c.G891T	p.M297I	TCCAGGCATTCCT	.	49	20	39	0	C|0.941;T|0.059	226	A	41223190	C	A	41223190	3	1	28	1	0	0	0	0	1	0	0	0	15209	710	25	3	226	3	ST13	22	41223190	Missense_Mutation	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	11172494	41223190	10081376	124	3294											
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	41739420	41739420	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZC3H7B	NM_017590	exon13	c.C1299T	p.G433G	CATAGGCCCCCGG	.	108	36	50	0	.	90	T	41739420	C	T	41739420	2	4	28	1	0	0	0	0	0	0	0	1	17570	753	26	3		3	ZC3H7B	22	41739420	Silent	SNP	C	TCGA-CC-5263-01A-01D-A12Z-10	516230	41739420	9565146	125	3295											
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47428285	47428285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ARAF	NM_001256196	exon11	c.G1254T	p.Q418H	TGCCCAGGGCATG	.	106	84	62	0	.	1557	T	47428285	G	T	47428285	3	4	28	1	0	0	0	0	1	0	0	0	837	991	35	3	1283	3	ARAF	23	47428285	Missense_Mutation	SNP	G	TCGA-CC-5263-01A-01D-A12Z-10		47428285	107842275	126	3296											
OPHN1	4983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	67283856	67283856	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OPHN1	NM_002547	exon21	c.A1998T	p.P666P	CACCTCTGGGCAG	.	216	168	114	0	.	110	A	67283856	T	A	67283856	2	1	28	1	0	0	0	0	0	0	0	1	10875	1567	55	4		4	OPHN1	23	67283856	Silent	SNP	T	TCGA-CC-5263-01A-01D-A12Z-10	19855571	67283856	87986704	127	3297											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3342300	3342300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRDM16	NM_022114	exon13	c.A3095T	p.H1032L	ACGAGCACGAGAA	.	114	38	44	0	.	660	T	3342300	A	T	3342300	3	4	29	1	0	0	0	0	1	0	0	0	12457	159	6	4	3145	4	PRDM16	1	3342300	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10		3342300	245908321	1	3298											
MASP2	10747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11107262	11107262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MASP2	NM_139208	exon1	c.G3A	p.M1I	CTACCTCATGGTG	.	112	36	47	0	.	94	T	11107262	C	T	11107262	3	4	29	1	0	0	0	0	1	0	0	0	9323	826	29	3	2119	3	MASP2	1	11107262	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	7764962	11107262	238143359	2	3299											
SRM	6723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	11119332	11119332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRM	NM_003132	exon2	c.C238T	p.Q80X	TCTCCTGGTAGGA	.	337	95	98	0	.	90	A	11119332	G	A	11119332	4	1	29	1	0	0	0	0	0	1	0	0	15150	1357	47	3	698	3	SRM	1	11119332	Nonsense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	12070	11119332	238131289	3	3300											
DHRS3	9249	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12677249	12677249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DHRS3	NM_004753	exon1	c.C105A	p.D35E	CGACAGGTCCCGC	.	133	75	56	1	.	91	T	12677249	G	T	12677249	3	4	29	1	0	0	0	0	1	0	0	0	4491	1252	44	3	827	3	DHRS3	1	12677249	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	1557917	12677249	236573372	4	3301											
TMEM82	388595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16073479	16073479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM82	NM_001013641	exon5	c.T875A	p.L292H	GCATCCTTGTCTC	.	400	114	159	0	.	90	A	16073479	T	A	16073479	3	1	29	1	0	0	0	0	1	0	0	0	16203	1609	56	4	893	4	TMEM82	1	16073479	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	3396230	16073479	233177142	5	3302											
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16577289	16577289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBXO42	NM_018994	exon10	c.G2030T	p.S677I	TGCAGGCTGGTTT	.	393	133	236	0	.	228	A	16577289	C	A	16577289	3	1	29	1	0	0	0	0	1	0	0	0	5751	797	28	3	127	3	FBXO42	1	16577289	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	503810	16577289	232673332	6	3303											
RCC1	1104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28863318	28863318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RCC1	NM_001048194	exon10	c.G1090A	p.E364K	GGTGCTGAGGAGA	.	264	149	97	0	.	228	A	28863318	G	A	28863318	3	1	29	1	0	0	0	0	1	0	0	0	13173	1291	45	3	1124	3	RCC1	1	28863318	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	12286029	28863318	220387303	7	3304											
RBM8A	9939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145508934	145508934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RBM8A	NM_005105	exon5	c.T361C	p.Y121H	GTTGAATATGAAA	.	483	184	215	0	.	90	C	145508934	T	C	145508934	3	2	29	1	0	0	0	0	1	0	0	0	13146	1406	49	2	379	2	RBM8A	1	145508934	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	116645616	145508934	103741687	8	3305											
IFI16	3428	hgsc.bcm.edu;bcgsc.ca	37	1	159015214	159015214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IFI16	NM_001206567	exon7	c.A1289T	p.Q430L	CTCCTCAGATGCC	.	1731	213	1314	0	.	91	T	159015214	A	T	159015214	3	4	29	1	0	0	0	0	1	0	0	0	7511	203	7	4		4	IFI16	1	159015214	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	13506280	159015214	90235407	9	3306											
KISS1	3814	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	204159887	204159887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KISS1	NM_002256	exon3	c.G142T	p.E48X	TCTGCTCCCCGGG	.	101	50	26	0	.	947	A	204159887	C	A	204159887	4	1	29	1	0	0	0	0	0	1	0	0	8327	864	30	3	278	3	KISS1	1	204159887	Nonsense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	45144673	204159887	45090734	10	3307											
NUAK2	81788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205272673	205272673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NUAK2	NM_030952	exon7	c.G1792C	p.D598H	AAGGATCCTGCCG	.	215	85	66	0	.	391	G	205272673	C	G	205272673	3	3	29	1	0	0	0	0	1	0	0	0	10713	855	30	4	98	4	NUAK2	1	205272673	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	1112786	205272673	43977948	11	3308											
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	209789918	209789918	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMB3	NM_000228	exon22	c.C3280T	p.Q1094X	AACTCTGACCCAA	.	631	221	166	0	.	156	A	209789918	G	A	209789918	4	1	29	1	0	0	0	0	0	1	0	0	8612	1299	45	3	246	3	LAMB3	1	209789918	Nonsense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	4517245	209789918	39460703	12	3309											
GUK1	2987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	228336430	228336430	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GUK1	NM_001242840	exon7	c.C603T	p.P201P	CGGGCCCATACAG	.	101	49	20	0	.	115	T	228336430	C	T	228336430	2	4	29	1	0	0	0	0	0	0	0	1	6900	609	21	3		3	GUK1	1	228336430	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	18546512	228336430	20914191	13	3310											
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242045224	242045224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EXO1	NM_130398	exon14	c.G2116A	p.D706N	GAATCTGATTGCA	.	210	77	467	1	.	661	A	242045224	G	A	242045224	3	1	29	1	0	0	0	0	1	0	0	0	5300	1290	45	3	2158	3	EXO1	1	242045224	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	13708794	242045224	7205397	14	3311											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9667941	9667941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM17	NM_003183	exon5	c.G593A	p.G198E	ACTAACCCTTTTG	.	92	28	155	0	.	659	T	9667941	C	T	9667941	3	4	29	1	0	0	0	0	1	0	0	0	238	623	22	3	1941	3	ADAM17	2	9667941	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		9667941	233531432	15	3312											
OTOF	9381	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	26725219	26725219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OTOF	NM_194248	exon7	c.C659A	p.S220X	GACACCGAGTCGG	.	188	22	37	1	.	135	T	26725219	G	T	26725219	4	4	29	1	0	0	0	0	0	1	0	0	11303	1059	37	1	5823	1	OTOF	2	26725219	Nonsense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	17057278	26725219	216474154	16	3313											
TRMT61B	55006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29092901	29092901	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRMT61B	NM_017910	exon1	c.T243C	p.C81C	CGAAAGACATCCA	.	311	152	86	0	.	90	G	29092901	A	G	29092901	2	3	29	1	0	0	0	0	0	0	0	1	16567	273	10	2		2	TRMT61B	2	29092901	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	2367682	29092901	214106472	17	3314											
LRPPRC	10128	broad.mit.edu;mdanderson.org	37	2	44201378	44201378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRPPRC	NM_133259	exon9	c.C1066T	p.Q356X	AAATTTGCAACGC	.	594	29	409	1	.	93	A	44201378	G	A	44201378	4	1	29	1	0	0	0	0	0	1	0	0	8965	1328	46	3	3238	3	LRPPRC	2	44201378	Nonsense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	15108477	44201378	198997995	18	3315											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141250227	141250227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP1B	NM_018557	exon57	c.G9070A	p.E3024K	TTATCTCATGATG	.	59	15	113	0	.	311	T	141250227	C	T	141250227	3	4	29	1	0	0	0	0	1	0	0	0	8955	835	29	3	4869	3	LRP1B	2	141250227	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	97048849	141250227	101949146	19	3316											
ITGAV	3685	broad.mit.edu;bcgsc.ca	37	2	187540575	187540575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITGAV	NM_002210	exon28	c.T2849C	p.L950P	ATTCTCTGAAGTC	.	117	5	297	0	.	653	C	187540575	T	C	187540575	3	2	29	1	0	0	0	0	1	0	0	0	7888	1580	55	2	3010	2	ITGAV	2	187540575	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	46290348	187540575	55658798	20	3317											
FEV	54738	broad.mit.edu;bcgsc.ca	37	2	219846741	219846741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FEV	NM_017521	exon3	c.A365G	p.Y122C	TAGGCGTAGCGCT	.	171	8	68	0	.	846	C	219846741	T	C	219846741	3	2	29	1	0	0	0	0	1	0	0	0	5822	1638	57	2	355	2	FEV	2	219846741	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	32306166	219846741	23352632	21	3318											
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225266346	225266346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM124B	NM_024785	exon1	c.G140C	p.R47P	CTGGCCCGTTCAG	.	65	53	59	0	.	92	G	225266346	C	G	225266346	3	3	29	1	0	0	0	0	1	0	0	0	5426	652	23	4	1326	4	FAM124B	2	225266346	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	5419605	225266346	17933027	22	3319											
USP40	55230	ucsc.edu;bcgsc.ca	37	2	234450954	234450954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP40	NM_018218	exon8	c.T1058C	p.I353T	TGATCAATCTCTT	.	37	4	84	0	.	455	G	234450954	A	G	234450954	3	3	29	1	0	0	0	0	1	0	0	0	17069	101	4	2	2781	2	USP40	2	234450954	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	9184608	234450954	8748419	23	3320											
SRGAP3	9901	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9055115	9055115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRGAP3	NM_014850	exon17	c.G2024A	p.C675Y	GCCTGGCAGGACA	.	279	98	318	0	.	344	T	9055115	C	T	9055115	3	4	29	1	0	0	0	0	1	0	0	0	15146	710	25	3	1299	3	SRGAP3	3	9055115	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		9055115	188967315	24	3321											
GLB1	2720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33106973	33106973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GLB1	NM_001135602	exon3	c.G322A	p.A108T	AACTGGCCCTCCA	.	428	230	314	0	.	135	T	33106973	C	T	33106973	3	4	29	1	0	0	0	0	1	0	0	0	6427	739	26	3	1547	3	GLB1	3	33106973	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	24051858	33106973	164915457	25	3322											
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38347844	38347844	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC22A14	NM_004803	exon1	c.C327T	p.H109H	CCCCCACCTGTCC	.	273	20	115	0	.	90	T	38347844	C	T	38347844	2	4	29	1	0	0	0	0	0	0	0	1	14445	506	18	3		3	SLC22A14	3	38347844	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	5240871	38347844	159674586	26	3323											
CADPS	8618	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62467411	62467411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CADPS	NM_003716	exon22	c.A3160T	p.I1054L	CATATATAGCAGC	.	203	113	207	1	.	281	A	62467411	T	A	62467411	3	1	29	1	0	0	0	0	1	0	0	0	2570	1406	49	4	937	4	CADPS	3	62467411	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	24119567	62467411	135555019	27	3324											
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134369796	134369796	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KY	NM_178554	exon1	c.C7T	p.L3L	TCTTCAGCTCCAT	.	325	85	138	0	.	24	A	134369796	G	A	134369796	2	1	29	1	0	0	0	0	0	0	0	1	8586	962	34	3		3	KY	3	134369796	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	71902385	134369796	63652634	28	3325											
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142405170	142405170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLS1	NM_001172312	exon9	c.A933T	p.K311N	CCCTAAAGGTGGG	.	116	32	87	0	.	91	T	142405170	A	T	142405170	3	4	29	1	0	0	0	0	1	0	0	0	12107	69	3	4	963	4	PLS1	3	142405170	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	8035374	142405170	55617260	29	3326											
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	156009791	156009791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNAB1	NM_172159	exon1	c.T95A	p.V32E	CCAATGTGGTGAA	.	313	27	141	0	.	94	A	156009791	T	A	156009791	3	1	29	1	0	0	0	0	1	0	0	0	8009	1696	59	4	622	4	KCNAB1	3	156009791	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	13604621	156009791	42012639	30	3327											
WDR49	151790	ucsc.edu;bcgsc.ca	37	3	167223203	167223203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDR49	NM_178824	exon13	c.G1720A	p.V574I	GTCTGACACTGGA	.	23	4	122	0	.	155	T	167223203	C	T	167223203	3	4	29	1	0	0	0	0	1	0	0	0	17299	492	17	3	385	3	WDR49	3	167223203	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	11213412	167223203	30799227	31	3328											
UBXN7	26043	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196134222	196134222	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBXN7	NM_015562	exon2	c.116delA	p.N39fs	TTATTGTTGCACG	.	284	93	201	0	.	71	-	196134222	T	-	196134222	7	5	29	1	0	1	0	1	0	0	0	0	16915	1725	60	0	1393	0	UBXN7	3	196134222	Frame_Shift_Del	DEL	T	TCGA-CC-5264-01A-01D-A12Z-10	28911019	196134222	1888208	32	3329											
WHSC1	7468	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1957858	1957858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WHSC1	NM_133335	exon15	c.G2824T	p.G942W	ATGGAGGGGGACC	.	217	104	105	0	.	664	T	1957858	G	T	1957858	3	4	29	1	0	0	0	0	1	0	0	0	17359	1232	43	3	2954	3	WHSC1	4	1957858	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10		1957858	189196418	33	3330											
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799406	38799406	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR1	NM_003263	exon4	c.G1047T	p.P349P	CAGGAACGGGCTA	.	79	16	84	0	.	524	A	38799406	C	A	38799406	2	1	29	1	0	0	0	0	0	0	0	1	15946	523	19	1		1	TLR1	4	38799406	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	36841548	38799406	152354870	34	3331											
YIPF7	285525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44631480	44631480	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_182592	exon4	c.T438C	p.N146N	CGTTTCATTCATA	.	104	58	158	0	.	.	G	44631480	A	G	44631480	2	3	29	1	0	0	0	0	0	0	0	1	17480	214	8	2		2	YIPF7	4	44631480	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	5832074	44631480	146522796	35	3332											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46930408	46930408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GABRA4	NM_000809	exon9	c.C1499A	p.S500X	GTAGCTGACAACT	.	99	63	196	1	.	156	T	46930408	G	T	46930408	4	4	29	1	0	0	0	0	0	1	0	0	6163	1294	45	3	169	3	GABRA4	4	46930408	Nonsense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	2298928	46930408	144223868	36	3333											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55599301	55599301	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIT	NM_000222	exon17	c.T2427A	p.C809X	GATTTGTGATTTT	.	82	17	174	0	.	20166	A	55599301	T	A	55599301	4	1	29	1	0	0	0	0	0	1	0	0	8329	1702	59	4	2493	4	KIT	4	55599301	Nonsense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	8668893	55599301	135554975	37	3334											
TMPRSS11F	389208	ucsc.edu;bcgsc.ca	37	4	68935724	68935724	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMPRSS11F	NM_207407	exon6	c.T516C	p.P172P	GTCAATAGCTGGA	.	34	4	158	0	.	91	G	68935724	A	G	68935724	2	3	29	1	0	0	0	0	0	0	0	1	16240	434	15	2		2	TMPRSS11F	4	68935724	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	13336423	68935724	122218552	38	3335											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268886	123268886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1109	NM_015312	exon74	c.G13081C	p.A4361P	TCCCCAGCTTCCA	.	60	17	138	0	.	80	C	123268886	G	C	123268886	3	2	29	1	0	0	0	0	1	0	0	0	8208	971	34	4	13375	4	KIAA1109	4	123268886	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	54333162	123268886	67885390	39	3336											
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159048703	159048703	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM198B	NM_001031700	exon6	c.T1440A	p.S480S	AAACAGAGACTGA	.	76	64	134	0	.	90	T	159048703	A	T	159048703	2	4	29	1	0	0	0	0	0	0	0	1	5529	291	11	4		4	FAM198B	4	159048703	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	35779817	159048703	32105573	40	3337											
HAND2	9464	hgsc.bcm.edu;bcgsc.ca	37	4	174450187	174450187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HAND2	NM_021973	exon1	c.C254A	p.P85Q	GCGCCCGGCGGCA	.	22	22	7	0	.	91	T	174450187	G	T	174450187	3	4	29	1	0	0	0	0	1	0	0	0	6950	1116	39	1	407	1	HAND2	4	174450187	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	15401484	174450187	16704089	41	3338											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37186475	37186475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C5orf42	NM_023073	exon24	c.G4102T	p.A1368S	GAAATGCTTTCAC	.	567	136	217	0	.	94	A	37186475	C	A	37186475	3	1	29	1	0	0	0	0	1	0	0	0	2301	797	28	3	5607	3	C5orf42	5	37186475	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		37186475	143728785	42	3339											
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39306883	39306883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C9	NM_001737	exon9	c.A1252G	p.S418G	TTTCACTGGTGAT	.	178	47	162	1	.	90	C	39306883	T	C	39306883	3	2	29	1	0	0	0	0	1	0	0	0	2443	1580	55	2	439	2	C9	5	39306883	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	2120408	39306883	141608377	43	3340											
ERBB2IP	55914	broad.mit.edu;bcgsc.ca	37	5	65288707	65288707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERBB2IP	NM_001253701	exon3	c.A161G	p.D54G	ATTTAGATGCTAA	.	46	4	82	0	.	653	G	65288707	A	G	65288707	3	3	29	1	0	0	0	0	1	0	0	0	5207	333	12	2	163	2	ERBB2IP	5	65288707	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	25981824	65288707	115626553	44	3341											
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96219543	96219543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERAP2	NM_001130140	exon3	c.T623C	p.F208S	TGGCTTTCCCTTG	.	175	149	250	0	.	68	C	96219543	T	C	96219543	3	2	29	1	0	0	0	0	1	0	0	0	5204	1783	62	2	629	2	ERAP2	5	96219543	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	30930836	96219543	84695717	45	3342											
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	148411195	148411195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SH3TC2	NM_024577	exon9	c.G1057T	p.G353X	CACTTCCCAGGGC	.	153	131	103	0	.	92	A	148411195	C	A	148411195	4	1	29	1	0	0	0	0	0	1	0	0	14262	632	22	3	2845	3	SH3TC2	5	148411195	Nonsense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	52191652	148411195	32504065	46	3343											
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170610173	170610173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RANBP17	NM_022897	exon17	c.A1868G	p.Y623C	TTACTTATATCCT	.	56	44	288	0	.	524	G	170610173	A	G	170610173	3	3	29	1	0	0	0	0	1	0	0	0	13027	449	16	2	1934	2	RANBP17	5	170610173	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	22198978	170610173	10305087	47	3344											
OR2W1	26692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29012335	29012335	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR2W1	NM_030903	exon1	c.T618A	p.I206I	GAGGACAATTATA	.	257	77	226	0	.	93	T	29012335	A	T	29012335	2	4	29	1	0	0	0	0	0	0	0	1	11032	126	5	4		4	OR2W1	6	29012335	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10		29012335	142102732	48	3345											
PPP2R5D	5528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42978962	42978962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PPP2R5D	NM_006245	exon16	c.A1747C	p.K583Q	ACCATCAAGGCAC	.	222	114	98	1	.	1082	C	42978962	A	C	42978962	3	2	29	1	0	0	0	0	1	0	0	0	12395	131	5	5	1809	5	PPP2R5D	6	42978962	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	13966627	42978962	128136105	49	3346											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138550956	138550956	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1244	NM_020340	exon5	c.T387C	p.D129D	ATTTGATCTGAAT	.	406	181	302	0	.	228	C	138550956	T	C	138550956	2	2	29	1	0	0	0	0	0	0	0	1	8217	1432	50	2		2	KIAA1244	6	138550956	Silent	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	95571994	138550956	32564111	50	3347											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157502282	157502282	+	Silent	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARID1B	NM_020732	exon12	c.C3315G	p.V1105V	CTACGTCTGCGTC	.	111	40	40	0	.	154	G	157502282	C	G	157502282	2	3	29	1	0	0	0	0	0	0	0	1	914	900	32	4		4	ARID1B	6	157502282	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	18951326	157502282	13612785	51	3348											
THSD7A	221981	ucsc.edu;bcgsc.ca	37	7	11416259	11416259	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	THSD7A	NM_015204	exon26	c.C4827T	p.Y1609Y	TACACCGTAAACC	.	40	4	72	0	.	71	A	11416259	G	A	11416259	2	1	29	1	0	0	0	0	0	0	0	1	15876	1140	40	1		1	THSD7A	7	11416259	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10		11416259	147722404	52	3349											
SHFM1	7979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96324155	96324155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SHFM1	NM_006304	exon2	c.A125C	p.N42T	TCCCAATTATCCT	.	147	17	143	0	.	227	G	96324155	T	G	96324155	3	3	29	1	0	0	0	0	1	0	0	0	14278	1493	52	5	95	5	SHFM1	7	96324155	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	84907896	96324155	62814508	53	3350											
NRCAM	4897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107807387	107807387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon27	c.G3445A	p.D1149N	ACACATCCTCTGA	.	188	19	81	1	.	156	T	107807387	C	T	107807387	3	4	29	1	0	0	0	0	1	0	0	0	10644	855	30	3	515	3	NRCAM	7	107807387	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	11483232	107807387	51331276	54	3351											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107836240	107836240	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon12	c.T1428C	p.C476C	GAAGGCACAGTCT	.	359	177	223	0	.	156	G	107836240	A	G	107836240	2	3	29	1	0	0	0	0	0	0	0	1	10644	157	6	2		2	NRCAM	7	107836240	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	28853	107836240	51302423	55	3352											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	108155899	108155899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PNPLA8	NM_001256008	exon2	c.C37T	p.L13F	TAAGGAGGTAAAT	.	82	43	87	0	.	135	A	108155899	G	A	108155899	3	1	29	1	0	0	0	0	1	0	0	0	12171	1000	35	3	2347	3	PNPLA8	7	108155899	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	319659	108155899	50982764	56	3353											
CFTR	1080	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117292987	117292987	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CFTR	NM_000492	exon24	c.3963+2T>G	.	ATGAGGTAAGGCT	.	130	54	290	2	.	518	G	117292987	T	G	117292987	5	3	29	1	0	0	0	0	0	0	1	0	3294	1652	57	5	4059	5	CFTR	7	117292987	Splice_Site	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	9137088	117292987	41845676	57	3354											
AASS	10157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	121756964	121756964	+	Silent	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AASS	NM_005763	exon7	c.C735G	p.P245P	TTCATGGGGCTCC	.	118	19	94	0	.	92	C	121756964	G	C	121756964	2	2	29	1	0	0	0	0	0	0	0	1	24	1219	43	4		4	AASS	7	121756964	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	4463977	121756964	37381699	58	3355											
TACC1	6867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	38678084	38678084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TACC1	NM_006283	exon3	c.G1322C	p.C441S	ACTTTTGTTCTCC	.	60	10	16	0	.	187	C	38678084	G	C	38678084	3	2	29	1	0	0	0	0	1	0	0	0	15498	1377	48	4	1332	4	TACC1	8	38678084	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10		38678084	107685938	59	3356											
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39537556	39537556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM18	NM_014237	exon16	c.G1632T	p.K544N	TTCCAGGGATGTT	.	154	69	138	2	.	228	T	39537556	G	T	39537556	3	4	29	1	0	0	0	0	1	0	0	0	239	1246	43	3	1694	3	ADAM18	8	39537556	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	859472	39537556	106826466	60	3357											
ZMAT4	79698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	40683185	40683185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZMAT4	NM_024645	exon2	c.C11T	p.S4F	ATATCGGAGGACT	.	87	37	35	0	.	92	A	40683185	G	A	40683185	3	1	29	1	0	0	0	0	1	0	0	0	17691	1174	41	3	702	3	ZMAT4	8	40683185	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	1145629	40683185	105680837	61	3358											
OPRK1	4986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54147486	54147486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OPRK1	NM_000912	exon3	c.C443G	p.T148S	GTCAAGGTGAAGA	.	225	64	99	0	.	70	C	54147486	G	C	54147486	3	2	29	1	0	0	0	0	1	0	0	0	10885	1261	44	4	707	4	OPRK1	8	54147486	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	13464301	54147486	92216536	62	3359											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68934295	68934295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PREX2	NM_025170	exon4	c.G361C	p.E121Q	TATGATGAATATT	.	43	16	75	0	.	390	C	68934295	G	C	68934295	3	2	29	1	0	0	0	0	1	0	0	0	12477	1291	45	4	375	4	PREX2	8	68934295	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	14786809	68934295	77429727	63	3360											
SLC7A13	157724	ucsc.edu;bcgsc.ca	37	8	87226761	87226761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC7A13	NM_138817	exon4	c.G1294A	p.G432R	GTAATCCGCTGAG	.	34	4	59	0	.	90	T	87226761	C	T	87226761	3	4	29	1	0	0	0	0	1	0	0	0	14695	661	23	1	122	1	SLC7A13	8	87226761	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	18292466	87226761	59137261	64	3361											
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88886016	88886016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DCAF4L2	NM_152418	exon1	c.C184T	p.H62Y	AGCTATGAATCTG	.	544	270	199	0	.	91	A	88886016	G	A	88886016	3	1	29	1	0	0	0	0	1	0	0	0	4272	1290	45	3	1007	3	DCAF4L2	8	88886016	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	1659255	88886016	57478006	65	3362											
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457698	107457698	+	Silent	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR13D1	NM_001004484	exon1	c.T996A	p.A332A	AGAGGCTGTAAAG	.	131	36	122	0	.	70	A	107457698	T	A	107457698	2	1	29	1	0	0	0	0	0	0	0	1	10940	1567	55	4		4	OR13D1	9	107457698	Silent	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10		107457698	33755733	66	3363											
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109687219	109687219	+	Silent	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF462	NM_021224	exon3	c.T1026G	p.S342S	CATGTCTTACCCT	.	197	35	54	0	.	95	G	109687219	T	G	109687219	2	3	29	1	0	0	0	0	0	0	0	1	17923	1596	56	5		5	ZNF462	9	109687219	Silent	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	2229521	109687219	31526212	67	3364											
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126134509	126134509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CRB2	NM_173689	exon9	c.C2490A	p.H830Q	CTTCCACTGTACC	.	235	97	91	2	.	91	A	126134509	C	A	126134509	3	1	29	1	0	0	0	0	1	0	0	0	3849	564	20	3	2524	3	CRB2	9	126134509	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	16447290	126134509	15078922	68	3365											
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131476850	131476850	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKN3	NM_013355	exon12	c.G1491A	p.L497L	TTTCCTGCCCAAG	.	275	111	89	0	.	521	A	131476850	G	A	131476850	2	1	29	1	0	0	0	0	0	0	0	1	11981	1306	46	3		3	PKN3	9	131476850	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	5342341	131476850	9736581	69	3366											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133948175	133948175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMC3	NM_006059	exon19	c.T3370A	p.S1124T	CTGGAGTCCTCGG	.	283	127	94	0	.	93	A	133948175	T	A	133948175	3	1	29	1	0	0	0	0	1	0	0	0	8616	1667	58	4	3444	4	LAMC3	9	133948175	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	2471325	133948175	7265256	70	3367											
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13239672	13239672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCM10	NM_182751	exon15	c.C2027T	p.T676I	CAAAAACAAACCC	.	287	118	148	0	.	653	T	13239672	C	T	13239672	3	4	29	1	0	0	0	0	1	0	0	0	9385	478	17	3	2081	3	MCM10	10	13239672	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		13239672	122295075	71	3368											
CCDC6	8030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61572436	61572436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC6	NM_005436	exon5	c.A804C	p.E268D	TTCCACTTCATTC	.	96	82	153	0	.	686	G	61572436	T	G	61572436	3	3	29	1	0	0	0	0	1	0	0	0	2830	1606	56	5	640	5	CCDC6	10	61572436	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	48332764	61572436	73962311	72	3369											
OR10A2	341276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6891293	6891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR10A2	NM_001004460	exon1	c.C308T	p.A103V	TCCTGGCTACCAT	.	265	114	134	0	.	113	T	6891293	C	T	6891293	3	4	29	1	0	0	0	0	1	0	0	0	10890	797	28	3	310	3	OR10A2	11	6891293	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		6891293	128115223	73	3370											
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579471	55579471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR5L1	NM_001004738	exon1	c.T529G	p.F177V	AACCACTTTTTCT	.	842	114	552	1	.	73	G	55579471	T	G	55579471	3	3	29	1	0	0	0	0	1	0	0	0	11170	1609	56	5	531	5	OR5L1	11	55579471	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	48688178	55579471	79427045	74	3371											
KCNA1	3736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5021299	5021299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNA1	NM_000217	exon2	c.A755G	p.N252S	TCAAAAACATCAT	.	262	117	96	2	.	228	G	5021299	A	G	5021299	3	3	29	1	0	0	0	0	1	0	0	0	8001	43	2	2	757	2	KCNA1	12	5021299	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10		5021299	128830596	75	3372											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43833853	43833853	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAMTS20	NM_025003	exon17	c.G2310T	p.G770G	AAAATTCCCTTCA	.	38	16	45	0	.	795	A	43833853	C	A	43833853	2	1	29	1	0	0	0	0	0	0	0	1	266	842	30	3		3	ADAMTS20	12	43833853	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	38812554	43833853	90018042	76	3373											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52056826	52056826	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SCN8A	NM_014191	exon2	c.C225T	p.G75G	CCAAGGCCTGGTT	.	254	123	151	0	.	29	T	52056826	C	T	52056826	2	4	29	1	0	0	0	0	0	0	0	1	13924	726	26	3		3	SCN8A	12	52056826	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	8222973	52056826	81795069	77	3374											
KRT6C	286887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52863028	52863028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KRT6C	NM_173086	exon9	c.A1513T	p.S505C	AGCCACTGCCGAC	.	135	29	72	0	.	114	A	52863028	T	A	52863028	3	1	29	1	0	0	0	0	1	0	0	0	8482	1580	55	4	185	4	KRT6C	12	52863028	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	806202	52863028	80988867	78	3375											
HOXC8	3224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54405067	54405067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HOXC8	NM_022658	exon2	c.G631T	p.D211Y	AACAAGGATAAAC	.	146	33	43	0	.	91	T	54405067	G	T	54405067	3	4	29	1	0	0	0	0	1	0	0	0	7316	1174	41	3	637	3	HOXC8	12	54405067	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	1542039	54405067	79446828	79	3376											
NFE2	4778	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54687079	54687079	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NFE2	NM_001261461	exon4	c.C201A	p.P67P	TGAGCAGGGGCAG	.	1042	450	389	2	.	226	T	54687079	G	T	54687079	2	4	29	1	0	0	0	0	0	0	0	1	10366	987	35	3		3	NFE2	12	54687079	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	282012	54687079	79164816	80	3377											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	124829344	124829344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCOR2	NM_006312	exon34	c.G4513A	p.E1505K	TCTCCTCGTAGCA	.	72	18	17	0	.	229	T	124829344	C	T	124829344	3	4	29	1	0	0	0	0	1	0	0	0	10236	893	31	1	3095	1	NCOR2	12	124829344	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	70142265	124829344	9022551	81	3378											
PIBF1	10464	ucsc.edu;bcgsc.ca	37	13	73369662	73369662	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PIBF1	NM_006346	exon4	c.T519C	p.P173P	TTTTCCTGAAGAT	.	44	4	253	0	.	136	C	73369662	T	C	73369662	2	2	29	1	0	0	0	0	0	0	0	1	11879	1567	55	2		2	PIBF1	13	73369662	Silent	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10		73369662	41800216	82	3379											
MYCBP2	23077	broad.mit.edu;bcgsc.ca	37	13	77641991	77641991	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYCBP2	NM_015057	exon71	c.T12180C	p.S4060S	TAGTAAAGAGGTT	.	56	5	85	0	.	236	G	77641991	A	G	77641991	2	3	29	1	0	0	0	0	0	0	0	1	10018	59	3	2		2	MYCBP2	13	77641991	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	4272329	77641991	37527887	83	3380											
BAZ1A	11177	ucsc.edu;bcgsc.ca	37	14	35280226	35280226	+	Missense_Mutation	SNP	T	T	C	rs145884653	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BAZ1A	NM_182648	exon5	c.A553G	p.I185V	GATCAATTGCATC	.	30	4	136	0	T|1.000;C|0.000	291	C	35280226	T	C	35280226	3	2	29	1	0	0	0	0	1	0	0	0	1329	1493	52	2	4209	2	BAZ1A	14	35280226	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10		35280226	72069314	84	3381											
PRPF39	55015	ucsc.edu;bcgsc.ca	37	14	45578823	45578823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRPF39	NM_017922	exon8	c.A1016G	p.K339R	AGATTAAAAGACC	.	38	4	172	1	.	70	G	45578823	A	G	45578823	3	3	29	1	0	0	0	0	1	0	0	0	12569	14	1	2	1042	2	PRPF39	14	45578823	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	10298597	45578823	61770717	85	3382											
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50915494	50915494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAP4K5	NM_006575	exon15	c.A1072G	p.M358V	TTACCATTTCATC	.	39	29	200	0	.	546	C	50915494	T	C	50915494	3	2	29	1	0	0	0	0	1	0	0	0	9263	1493	52	2	1540	2	MAP4K5	14	50915494	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	5336671	50915494	56434046	86	3383											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68238928	68238928	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFYVE26	NM_015346	exon29	c.5321-1G>A	.	AGATACCTGGGAG	.	90	71	148	0	.	162	T	68238928	C	T	68238928	5	4	29	1	0	0	0	0	0	0	1	0	17665	695	24	3	2359	3	ZFYVE26	14	68238928	Splice_Site	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	17323434	68238928	39110612	87	3384											
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25953217	25953217	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ATP10A	NM_024490	exon12	c.G2481A	p.L827L	GCTTTGCAACCAG	.	165	123	96	2	.	139	T	25953217	C	T	25953217	2	4	29	1	0	0	0	0	0	0	0	1	1116	709	25	3		3	ATP10A	15	25953217	Silent	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		25953217	76578175	88	3385											
RTF1	23168	broad.mit.edu;bcgsc.ca	37	15	41767797	41767797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RTF1	NM_015138	exon10	c.A1361G	p.K454R	TTATGAAGTGGAA	.	147	7	154	0	.	92	G	41767797	A	G	41767797	3	3	29	1	0	0	0	0	1	0	0	0	13721	72	3	2	1399	2	RTF1	15	41767797	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	15814580	41767797	60763595	89	3386											
ARNT2	9915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80767490	80767490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARNT2	NM_014862	exon5	c.T548G	p.L183R	GCACACTGTATGA	.	187	153	111	0	.	175	G	80767490	T	G	80767490	3	3	29	1	0	0	0	0	1	0	0	0	966	1580	55	5	566	5	ARNT2	15	80767490	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	38999693	80767490	21763902	90	3387											
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22126725	22126725	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	VWA3A	NM_173615	exon9	c.G747A	p.L249L	CAACCTGCTACAA	.	173	79	98	0	.	1	A	22126725	G	A	22126725	2	1	29	1	0	0	0	0	0	0	0	1	17237	1306	46	3		3	VWA3A	16	22126725	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10		22126725	68228028	91	3388											
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31072640	31072640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF668	NM_001172669	exon4	c.T1678A	p.S560T	GGTGTGAGCGCTC	.	147	28	51	0	.	585	T	31072640	A	T	31072640	3	4	29	1	0	0	0	0	1	0	0	0	18072	304	11	4	254	4	ZNF668	16	31072640	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	8945915	31072640	59282113	92	3389											
TSNAXIP1	55815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67859123	67859123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TSNAXIP1	NM_018430	exon7	c.C600A	p.D200E	CGCAGACCTGAAT	.	165	69	68	0	.	90	A	67859123	C	A	67859123	3	1	29	1	0	0	0	0	1	0	0	0	16629	506	18	3	618	3	TSNAXIP1	16	67859123	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	36786483	67859123	22495630	93	3390											
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6360967	6360970	+	Frame_Shift_Del	DEL	AGGC	AGGC	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	AGGC	AGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PITPNM3	NM_031220	exon19	c.2563_2566del	p.855_856del	TCTGGGAGGCAGG	.	55	41	52	0	.	228	-	6360970	AGGC	-	6360967	7	5	29	1	0	1	0	1	0	0	0	0	11952	304	11	0	366	0	PITPNM3	17	6360967	Frame_Shift_Del	DEL	AGGC	TCGA-CC-5264-01A-01D-A12Z-10		6360967	74834243	94	3391											
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42883077	42883077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GJC1	NM_005497	exon3	c.G109C	p.A37P	CTACAGCTGTAAG	.	230	96	139	0	.	248	G	42883077	C	G	42883077	3	3	29	1	0	0	0	0	1	0	0	0	6414	797	28	4	1085	4	GJC1	17	42883077	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	36522110	42883077	38312133	95	3392											
FAM20A	54757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66533757	66533757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM20A	NM_017565	exon11	c.T1487C	p.L496P	AGGGCAAGGAGGT	.	242	85	149	1	.	90	G	66533757	A	G	66533757	3	3	29	1	0	0	0	0	1	0	0	0	5537	72	3	2	142	2	FAM20A	17	66533757	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	23650680	66533757	14661453	96	3393											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	76421607	76421607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAH17	NM_173628	exon80	c.T12961A	p.W4321R	CCAGCCACACGGT	.	100	12	31	0	.	142	T	76421607	A	T	76421607	3	4	29	1	0	0	0	0	1	0	0	0	4601	159	6	4	435	4	DNAH17	17	76421607	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	9887850	76421607	4773603	97	3394											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77075702	77075702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ENGASE	NM_001042573	exon4	c.A548G	p.H183R	ACAGGCATGGGGT	.	197	82	65	0	.	91	G	77075702	A	G	77075702	3	3	29	1	0	0	0	0	1	0	0	0	5118	217	8	2	562	2	ENGASE	17	77075702	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	654095	77075702	4119508	98	3395											
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79982609	79982609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRRC45	NM_144999	exon3	c.A323G	p.K108R	TGGGAAAACTCCT	.	108	46	51	0	.	91	G	79982609	A	G	79982609	3	3	29	1	0	0	0	0	1	0	0	0	9002	14	1	2	333	2	LRRC45	17	79982609	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	2906907	79982609	1212601	99	3396											
FASN	2194	bcgsc.ca;mdanderson.org	37	17	80051491	80051491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FASN	NM_004104	exon4	c.T437C	p.F146S	AAGAAGAAGGAGA	.	79	41	40	1	.	90	G	80051491	A	G	80051491	3	3	29	1	0	0	0	0	1	0	0	0	5683	246	9	2	7258	2	FASN	17	80051491	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	68882	80051491	1143719	100	3397											
MBD3	53615	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1578491	1578491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBD3	NM_003926	exon6	c.G724T	p.A242S	TCAGCGCCTCCTC	.	98	20	39	0	.	93	A	1578491	C	A	1578491	3	1	29	1	0	0	0	0	1	0	0	0	9344	739	26	3	155	3	MBD3	19	1578491	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10		1578491	57550492	101	3398											
LONP1	9361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	5699211	5699211	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LONP1	NM_004793	exon10	c.C1512T	p.S504S	GGCAATGAACTCC	.	43	27	22	0	.	91	A	5699211	G	A	5699211	2	1	29	1	0	0	0	0	0	0	0	1	8892	1281	45	3		3	LONP1	19	5699211	Silent	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	4120720	5699211	53429772	102	3399											
SBSN	374897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36019030	36019030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SBSN	NM_001166034	exon1	c.G154T	p.D52Y	TGCCATCCAGGGC	.	375	209	172	1	.	91	A	36019030	C	A	36019030	3	1	29	1	0	0	0	0	1	0	0	0	13864	855	30	3	1634	3	SBSN	19	36019030	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	30319819	36019030	23109953	103	3400											
ZNF565	147929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36673862	36673862	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF565	NM_001042474	exon5	c.G1006T	p.E336X	TACACTCGTAGGG	.	163	49	94	0	.	92	A	36673862	C	A	36673862	4	1	29	1	0	0	0	0	0	1	0	0	17993	893	31	1	497	1	ZNF565	19	36673862	Nonsense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	654832	36673862	22455121	104	3401											
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39898413	39898413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP36	NM_003407	exon2	c.G73T	p.V25L	GTGCCCGTGCCAT	.	72	18	24	0	.	227	T	39898413	G	T	39898413	3	4	29	1	0	0	0	0	1	0	0	0	17642	1145	40	1	61	1	ZFP36	19	39898413	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	3224551	39898413	19230570	105	3402											
B9D2	80776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41860879	41860879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	B9D2	NM_030578	exon4	c.G254T	p.S85I	CCAAAGCTGTCCT	.	72	43	32	0	.	69	A	41860879	C	A	41860879	3	1	29	1	0	0	0	0	1	0	0	0	1278	797	28	3	277	3	B9D2	19	41860879	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	1962466	41860879	17268104	106	3403											
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48886580	48886580	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDELR1	NM_006801	exon5	c.A609G	p.L203L	CCCCTTTAGGACT	.	107	56	49	0	.	90	C	48886580	T	C	48886580	2	2	29	1	0	0	0	0	0	0	0	1	8119	1741	61	2		2	KDELR1	19	48886580	Silent	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	7025701	48886580	10242403	107	3404											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55493601	55493601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NLRP2	NM_017852	exon6	c.A535T	p.S179C	GGAGATAGCAAAG	.	240	124	104	0	.	120	T	55493601	A	T	55493601	3	4	29	1	0	0	0	0	1	0	0	0	10477	420	15	4	553	4	NLRP2	19	55493601	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	6607021	55493601	3635382	108	3405											
ZIK1	284307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58101688	58101688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZIK1	NM_001010879	exon4	c.G509T	p.W170L	GCAAATGGGAGGT	.	147	48	83	0	.	91	T	58101688	G	T	58101688	3	4	29	1	0	0	0	0	1	0	0	0	17680	1357	47	3	523	3	ZIK1	19	58101688	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	2608087	58101688	1027295	109	3406											
ADRA1D	146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	4202228	4202229	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	p.A554N	CAGGTGGCGCCCT	.	236	102	62	0	.	.	TT	4202229	GC	TT	4202228	3	4	29	1	0	0	0	0	1	0	0	0	336	1203	42	3	61	3	ADRA1D	20	4202228	Missense_Mutation	DNP	GC	TCGA-CC-5264-01A-01D-A12Z-10		4202228	58823292	110	3407											
C20orf26	26074	broad.mit.edu;bcgsc.ca	37	20	20150077	20150077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C20orf26	NM_015585	exon13	c.A1358G	p.Y453C	ACCTCTACGTCTT	.	150	7	117	1	.	94	G	20150077	A	G	20150077	3	3	29	1	0	0	0	0	1	0	0	0	2106	391	14	2	1404	2	C20orf26	20	20150077	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	15947849	20150077	42875443	111	3408											
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	39792450	39792451	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCG1	NM_182811	exon10	c.987_988insT	p.Y329fs	CCACTACTGGATC	.	351	139	112	0	.	911	T	39792451	-	T	39792450	7	5	29	1	0	1	1	0	0	0	0	0	12035	576	20	0	1025	0	PLCG1	20	39792450	Frame_Shift_Ins	INS	-	TCGA-CC-5264-01A-01D-A12Z-10	19642373	39792450	23233070	112	3409											
BMP7	655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	55840845	55840845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BMP7	NM_001719	exon1	c.A334T	p.S112C	GGGTACTGAAGAC	.	177	79	61	0	.	187	A	55840845	T	A	55840845	3	1	29	1	0	0	0	0	1	0	0	0	1465	1580	55	4	989	4	BMP7	20	55840845	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10	16048395	55840845	7184675	113	3410											
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57766858	57766858	+	Silent	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF831	NM_178457	exon1	c.A784C	p.R262R	GATGTGAGGACCG	.	125	17	34	0	.	126	C	57766858	A	C	57766858	2	2	29	1	0	0	0	0	0	0	0	1	18182	295	11	5		5	ZNF831	20	57766858	Silent	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	1926013	57766858	5258662	114	3411											
CABIN1	23523	ucsc.edu;bcgsc.ca	37	22	24479290	24479290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CABIN1	NM_001199281	exon20	c.T2858C	p.F953S	ACAGCTTCCCCAG	.	15	4	43	0	.	94	C	24479290	T	C	24479290	3	2	29	1	0	0	0	0	1	0	0	0	2528	1783	62	2	2932	2	CABIN1	22	24479290	Missense_Mutation	SNP	T	TCGA-CC-5264-01A-01D-A12Z-10		24479290	26825276	115	3412											
SGSM1	129049	ucsc.edu;bcgsc.ca	37	22	25294176	25294176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SGSM1	NM_001039948	exon20	c.G2425A	p.G809S	AGGGATGGCAGCG	.	40	4	41	0	.	27	A	25294176	G	A	25294176	3	1	29	1	0	0	0	0	1	0	0	0	14222	1348	47	3	2503	3	SGSM1	22	25294176	Missense_Mutation	SNP	G	TCGA-CC-5264-01A-01D-A12Z-10	814886	25294176	26010390	116	3413											
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26422560	26422560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO18B	NM_032608	exon43	c.A6620G	p.D2207G	TTGGGGACGGCGA	.	45	4	42	0	.	142	G	26422560	A	G	26422560	3	3	29	1	0	0	0	0	1	0	0	0	10066	275	10	2	6786	2	MYO18B	22	26422560	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10	1128384	26422560	24882006	117	3414											
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12904609	12904609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR7	NM_016562	exon3	c.A982G	p.K328E	TTGGCCAAAGAAA	.	95	82	86	0	.	564	G	12904609	A	G	12904609	3	3	29	1	0	0	0	0	1	0	0	0	15953	131	5	2	988	2	TLR7	23	12904609	Missense_Mutation	SNP	A	TCGA-CC-5264-01A-01D-A12Z-10		12904609	142365951	118	3415											
HEPH	9843	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	65393436	65393436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HEPH	NM_138737	exon4	c.C580G	p.L194V	GGTTCCCTATACC	.	51	13	34	0	.	135	G	65393436	C	G	65393436	3	3	29	1	0	0	0	0	1	0	0	0	7054	680	24	4	594	4	HEPH	23	65393436	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	52488827	65393436	89877124	119	3416											
MORF4L2	9643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102931737	102931737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MORF4L2	NM_001142422	exon5	c.G219T	p.R73S	GGTCTTCCTCACG	.	219	206	82	0	.	130	A	102931737	C	A	102931737	3	1	29	1	0	0	0	0	1	0	0	0	9707	854	30	3	651	3	MORF4L2	23	102931737	Missense_Mutation	SNP	C	TCGA-CC-5264-01A-01D-A12Z-10	37538301	102931737	52338823	120	3417											
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6530878	6530878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHG5	NM_001265592	exon15	c.C1696T	p.R566W	TGAGCCGCTGGTG	.	75	47	52	0	.	652	A	6530878	G	A	6530878	3	1	30	1	0	0	0	0	1	0	0	0	12073	1086	38	1	1593	1	PLEKHG5	1	6530878	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10		6530878	242719743	1	3418											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27107084	27107085	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARID1A	NM_006015	exon20	c.6695_6696insGC	p.R2232fs	TGATGCGGCGGGC	.	22	13	18	0	.	584	GC	27107085	-	GC	27107084	7	5	30	1	0	1	1	0	0	0	0	0	913	1116	39	0	6773	0	ARID1A	1	27107084	Frame_Shift_Ins	INS	-	TCGA-CC-A123-01A-11D-A12Z-10	20576206	27107084	222143537	2	3419											
COL16A1	1307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32121031	32121031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COL16A1	NM_001856	exon67	c.G4174A	p.G1392S	TCTTGCCAGGTCC	.	204	84	177	1	.	98	T	32121031	C	T	32121031	3	4	30	1	0	0	0	0	1	0	0	0	3673	594	21	3	660	3	COL16A1	1	32121031	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	5013947	32121031	217129590	3	3420											
INPP5B	3633	broad.mit.edu;bcgsc.ca	37	1	38339824	38339824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	INPP5B	NM_005540	exon18	c.T1792C	p.C598R	GAAAACAGAACTG	.	88	7	68	1	.	227	G	38339824	A	G	38339824	3	3	30	1	0	0	0	0	1	0	0	0	7755	188	7	2	977	2	INPP5B	1	38339824	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	6218793	38339824	210910797	4	3421											
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77333366	77333366	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ST6GALNAC5	NM_030965	exon1	c.G6A	p.K2K	AATGAAGACCCTG	.	118	52	115	0	.	92	A	77333366	G	A	77333366	2	1	30	1	0	0	0	0	0	0	0	1	15226	933	33	3		3	ST6GALNAC5	1	77333366	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	38993542	77333366	171917255	5	3422											
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152759968	152759968	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCE1E	NM_178353	exon2	c.193delG	p.G65fs	AGCTCTGGGGGCT	.	147	39	112	0	.	90	-	152759968	G	-	152759968	7	5	30	1	0	1	0	1	0	0	0	0	8663	1348	47	0	195	0	LCE1E	1	152759968	Frame_Shift_Del	DEL	G	TCGA-CC-A123-01A-11D-A12Z-10	75426602	152759968	96490653	6	3423											
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883162	152883162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IVL	NM_005547	exon2	c.G889A	p.D297N	CACCTGGATCAGC	.	220	85	159	2	.	93	A	152883162	G	A	152883162	3	1	30	1	0	0	0	0	1	0	0	0	7929	1174	41	3	891	3	IVL	1	152883162	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	123194	152883162	96367459	7	3424											
LAMB3	3914	broad.mit.edu;bcgsc.ca	37	1	209790903	209790903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LAMB3	NM_000228	exon21	c.A3080G	p.K1027R	ACCAGCTTTTCTG	.	84	6	83	0	.	156	C	209790903	T	C	209790903	3	2	30	1	0	0	0	0	1	0	0	0	8612	1609	56	2	450	2	LAMB3	1	209790903	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	56907741	209790903	39459718	8	3425											
TPO	7173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1497607	1497607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TPO	NM_001206744	exon11	c.C1802A	p.P601H	GCCTGCCTCGCCT	.	107	46	63	1	.	332	A	1497607	C	A	1497607	3	1	30	1	0	0	0	0	1	0	0	0	16407	681	24	3	1840	3	TPO	2	1497607	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		1497607	241701766	9	3426											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	9676045	9676045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ADAM17	NM_003183	exon4	c.C368A	p.P123H	GAGTCAGGCTCAC	.	108	8	123	0	.	659	T	9676045	G	T	9676045	3	4	30	1	0	0	0	0	1	0	0	0	238	1000	35	3	2170	3	ADAM17	2	9676045	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	8178438	9676045	233523328	10	3427											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	16082220	16082220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYCN	NM_005378	exon2	c.A34G	p.M12V	CCGGGCATGATCT	.	268	120	162	0	.	1271	G	16082220	A	G	16082220	3	3	30	1	0	0	0	0	1	0	0	0	10021	217	8	2	36	2	MYCN	2	16082220	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	6406175	16082220	227117153	11	3428											
EXOC6B	23233	ucsc.edu;bcgsc.ca	37	2	72606935	72606935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EXOC6B	NM_015189	exon19	c.T2045C	p.L682P	AACAAAAGTTGCA	.	39	4	30	1	.	68	G	72606935	A	G	72606935	3	3	30	1	0	0	0	0	1	0	0	0	5309	72	3	2	406	2	EXOC6B	2	72606935	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	56524715	72606935	170592438	12	3429											
SCN1A	6323	broad.mit.edu;bcgsc.ca	37	2	166897747	166897747	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SCN1A	NM_001165963	exon13	c.A2409G	p.G803G	CAAGTTTCCTACT	.	143	6	98	0	.	147	C	166897747	T	C	166897747	2	2	30	1	0	0	0	0	0	0	0	1	13914	1770	62	2		2	SCN1A	2	166897747	Silent	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	94290812	166897747	76301626	13	3430											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179472788	179472788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TTN	NM_001267550	exon276	c.C52726T	p.P17576S	CTCTTGGGATAGG	.	172	78	120	0	.	636	A	179472788	G	A	179472788	3	1	30	1	0	0	0	0	1	0	0	0	16732	1232	43	3	55315	3	TTN	2	179472788	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	12575041	179472788	63726585	14	3431											
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776191	9776191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BRPF1	NM_001003694	exon2	c.G367A	p.E123K	GAGGATGAGGAAG	.	116	72	88	0	.	92	A	9776191	G	A	9776191	3	1	30	1	0	0	0	0	1	0	0	0	1520	1291	45	3	369	3	BRPF1	3	9776191	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10		9776191	188246239	15	3432											
ZCWPW2	152098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	28566047	28566047	+	Silent	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZCWPW2	NM_001040432	exon9	c.A939T	p.A313A	TCCTGCAGGCAGT	.	326	79	323	0	.	24	T	28566047	A	T	28566047	2	4	30	1	0	0	0	0	0	0	0	1	17595	175	7	4		4	ZCWPW2	3	28566047	Silent	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	18789856	28566047	169456383	16	3433											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37366808	37366808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GOLGA4	NM_001172713	exon15	c.A3497G	p.N1166S	ACTTGAATAAGTC	.	225	123	207	0	.	93	G	37366808	A	G	37366808	3	3	30	1	0	0	0	0	1	0	0	0	6555	101	4	2	3555	2	GOLGA4	3	37366808	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	8800761	37366808	160655622	17	3434											
KY	339855	bcgsc.ca;mdanderson.org	37	3	134348537	134348537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KY	NM_178554	exon4	c.G263T	p.G88V	TGTGTCCCTACAA	.	202	64	108	2	.	24	A	134348537	C	A	134348537	3	1	30	1	0	0	0	0	1	0	0	0	8586	637	22	3	1754	3	KY	3	134348537	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	96981729	134348537	63673893	18	3435											
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155643090	155643090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GMPS	NM_003875	exon12	c.A1495T	p.M499L	AAGCTGATGCAAA	.	1011	681	643	1	.	229	T	155643090	A	T	155643090	3	4	30	1	0	0	0	0	1	0	0	0	6498	333	12	4	1541	4	GMPS	3	155643090	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	21294553	155643090	42379340	19	3436											
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	180381668	180381668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC39	NM_181426	exon2	c.T197G	p.L66R	ATTGAGAGCTCTT	.	168	13	137	0	.	72	C	180381668	A	C	180381668	3	2	30	1	0	0	0	0	1	0	0	0	2811	304	11	5	2704	5	CCDC39	3	180381668	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	24738578	180381668	17640762	20	3437											
FRAS1	80144	ucsc.edu;bcgsc.ca	37	4	79284727	79284727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRAS1	NM_001166133	exon21	c.T2483C	p.L828P	TCTGCCTCAGGTG	.	45	4	82	0	.	68	C	79284727	T	C	79284727	3	2	30	1	0	0	0	0	1	0	0	0	6042	1551	54	2	2565	2	FRAS1	4	79284727	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10		79284727	111869549	21	3438											
METAP1	23173	ucsc.edu;bcgsc.ca	37	4	99955478	99955478	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_015143	exon3	c.A264G	p.R88R	ACTCAGACCACAT	.	42	4	52	0	.	.	G	99955478	A	G	99955478	2	3	30	1	0	0	0	0	0	0	0	1	9486	272	10	2		2	METAP1	4	99955478	Silent	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	20670751	99955478	91198798	22	3439											
ITGA2	3673	broad.mit.edu;bcgsc.ca	37	5	52379216	52379216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ITGA2	NM_002203	exon27	c.A3191G	p.D1064G	TGAAAGACGTTCA	.	197	11	123	1	.	226	G	52379216	A	G	52379216	3	3	30	1	0	0	0	0	1	0	0	0	7875	275	10	2	3297	2	ITGA2	5	52379216	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10		52379216	128536044	23	3440											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260049	55260057	+	In_Frame_Del	DEL	CAATGTTGA	CAATGTTGA	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAATGTTGA	CAATGTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL6ST	NM_175767	exon6	c.575_583del	p.192_195del	AGACTTCAATGTT	.	273	73	296	0	.	290	-	55260057	CAATGTTGA	-	55260049	7	5	30	1	0	1	0	1	0	0	0	0	7703	835	29	0	2221	0	IL6ST	5	55260049	In_Frame_Del	DEL	CAATGTTGA	TCGA-CC-A123-01A-11D-A12Z-10	2880833	55260049	125655211	24	3441											
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	86637134	86637134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RASA1	NM_002890	exon6	c.A1045T	p.K349X	GAAGGAAAAATGT	.	145	49	167	0	.	661	T	86637134	A	T	86637134	4	4	30	1	0	0	0	0	0	1	0	0	13060	15	1	4	1079	4	RASA1	5	86637134	Nonsense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	31377085	86637134	94278126	25	3442											
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140741069	140741069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDHGB2	NM_018923	exon1	c.C1367T	p.S456F	AGACTTCCTACAT	.	130	57	161	1	.	33	T	140741069	C	T	140741069	3	4	30	1	0	0	0	0	1	0	0	0	11563	855	30	3	1369	3	PCDHGB2	5	140741069	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	54103935	140741069	40174191	26	3443											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141036086	141036086	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARAP3	NM_022481	exon27	c.G3774T	p.L1258L	CTTGAGCAGCAGC	.	92	35	86	0	.	291	A	141036086	C	A	141036086	2	1	30	1	0	0	0	0	0	0	0	1	840	697	25	3		3	ARAP3	5	141036086	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	295017	141036086	39879174	27	3444											
GABRA1	2554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161318012	161318012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GABRA1	NM_001127643	exon9	c.C812T	p.S271F	AAGTCTCCTTCTG	.	148	62	156	1	.	93	T	161318012	C	T	161318012	3	4	30	1	0	0	0	0	1	0	0	0	6160	855	30	3	838	3	GABRA1	5	161318012	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	20281926	161318012	19597248	28	3445											
PRRT1	80863	broad.mit.edu;mdanderson.org	37	6	32118206	32118206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRRT1	NM_030651	exon2	c.C497A	p.P166H	TATCCGGGCGCTA	.	32	6	14	0	.	153	T	32118206	G	T	32118206	3	4	30	1	0	0	0	0	1	0	0	0	12609	1232	43	3	435	3	PRRT1	6	32118206	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10		32118206	138996861	29	3446											
AGPAT1	10554	broad.mit.edu;bcgsc.ca	37	6	32138749	32138749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AGPAT1	NM_006411	exon3	c.T299C	p.V100A	GAGACAACAACAT	.	94	4	61	0	.	90	G	32138749	A	G	32138749	3	3	30	1	0	0	0	0	1	0	0	0	386	43	2	2	572	2	AGPAT1	6	32138749	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	20543	32138749	138976318	30	3447											
RXRB	6257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33165688	33165688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RXRB	NM_021976	exon4	c.G671T	p.G224V	TTGCAACCCTCAC	.	201	43	117	2	.	189	A	33165688	C	A	33165688	3	1	30	1	0	0	0	0	1	0	0	0	13764	507	18	3	958	3	RXRB	6	33165688	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	1026939	33165688	137949379	31	3448											
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71603895	71603895	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	B3GAT2	NM_080742	exon2	c.C672T	p.N224N	TTTGCCGTTTTCC	.	67	18	61	0	.	93	A	71603895	G	A	71603895	2	1	30	1	0	0	0	0	0	0	0	1	1254	1136	40	1		1	B3GAT2	6	71603895	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	38438207	71603895	99511172	32	3449											
HDAC2	3066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114264582	114264582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HDAC2	NM_001527	exon12	c.T1311A	p.D437E	CTTATGATCAGCC	.	194	71	198	0	.	660	T	114264582	A	T	114264582	3	4	30	1	0	0	0	0	1	0	0	0	7007	330	12	4	167	4	HDAC2	6	114264582	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	42660687	114264582	56850485	33	3450											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484350	43484350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HECW1	NM_015052	exon11	c.T1579A	p.S527T	CGGGCCTCGGTGA	.	73	20	58	0	.	669	A	43484350	T	A	43484350	3	1	30	1	0	0	0	0	1	0	0	0	7042	1551	54	4	1613	4	HECW1	7	43484350	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10		43484350	115654313	34	3451											
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	45005391	45005391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO1G	NM_033054	exon17	c.G2226A	p.W742X	CCGGAACCAGCGC	.	23	14	16	0	.	137	T	45005391	C	T	45005391	4	4	30	1	0	0	0	0	0	1	0	0	10074	508	18	3	854	3	MYO1G	7	45005391	Nonsense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	1521041	45005391	114133272	35	3452											
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97498423	97498423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ASNS	NM_133436	exon3	c.G46C	p.V16L	ACTGAACAGAAAG	.	186	55	221	0	.	91	G	97498423	C	G	97498423	3	3	30	1	0	0	0	0	1	0	0	0	1048	478	17	4	1683	4	ASNS	7	97498423	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	52493032	97498423	61640240	36	3453											
ZNF800	168850	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127013575	127013575	+	Silent	SNP	G	G	T	rs76411607	byfrequency;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF800	NM_176814	exon5	c.C1815A	p.V605V	AATACCGACGTCA	.	248	85	327	2	G|0.982;A|0.018	23	T	127013575	G	T	127013575	2	4	30	1	0	0	0	0	0	0	0	1	18166	1045	37	1		1	ZNF800	7	127013575	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	29515152	127013575	32125088	37	3454											
ZC3HC1	51530	ucsc.edu;bcgsc.ca	37	7	129664107	129664107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZC3HC1	NM_016478	exon7	c.A1016G	p.E339G	ACCTGCTCTGAGC	.	27	4	23	0	.	90	C	129664107	T	C	129664107	3	2	30	1	0	0	0	0	1	0	0	0	17574	1551	54	2	508	2	ZC3HC1	7	129664107	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	2650532	129664107	29474556	38	3455											
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	132192587	132192587	+	Missense_Mutation	SNP	G	G	A	rs200648753		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLXNA4	NM_001105543	exon2	c.C866T	p.A289V	TTGAAGGCTGTGT	.	81	36	62	1	G|0.999;A|0.000	91	A	132192587	G	A	132192587	3	1	30	1	0	0	0	0	1	0	0	0	12122	1203	42	3	5256	3	PLXNA4	7	132192587	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	2528480	132192587	26946076	39	3456											
ZNF777	27153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152476	149152476	+	Missense_Mutation	SNP	G	G	A	rs201407206		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF777	NM_015694	exon2	c.C638T	p.T213M	GTCCCCGTCCTGC	.	161	61	167	1	G|0.999;A|0.001	136	A	149152476	G	A	149152476	3	1	30	1	0	0	0	0	1	0	0	0	18147	1145	40	1	1877	1	ZNF777	7	149152476	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	16959889	149152476	9986187	40	3457											
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113662399	113662399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CSMD3	NM_198123	exon19	c.A3184G	p.T1062A	CACAGGTTGGAAG	.	363	84	143	1	.	1132	C	113662399	T	C	113662399	3	2	30	1	0	0	0	0	1	0	0	0	3946	1725	60	2	8151	2	CSMD3	8	113662399	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10		113662399	32701623	41	3458											
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116616801	116616801	+	Silent	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRPS1	NM_014112	exon4	c.A1395T	p.L465L	ATGTTCTAGCAGT	.	238	63	106	0	.	229	A	116616801	T	A	116616801	2	1	30	1	0	0	0	0	0	0	0	1	16590	1509	53	4		4	TRPS1	8	116616801	Silent	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	2954402	116616801	29747221	42	3459											
OC90	729330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133053841	133053841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OC90	NM_001080399	exon5	c.G275T	p.R92L	AAGTCTCGGGGGC	.	270	84	151	0	.	206	A	133053841	C	A	133053841	3	1	30	1	0	0	0	0	1	0	0	0	10814	884	31	1	1198	1	OC90	8	133053841	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	16437040	133053841	13310181	43	3460											
FANCG	2189	ucsc.edu;bcgsc.ca	37	9	35079184	35079184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCG	NM_004629	exon2	c.C139A	p.L47M	CTTCCAGTGCATC	.	45	4	38	1	.	724	T	35079184	G	T	35079184	3	4	30	1	0	0	0	0	1	0	0	0	5668	1020	36	3	1781	3	FANCG	9	35079184	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10		35079184	106134247	44	3461											
LCN2	3934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130912582	130912582	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCN2	NM_005564	exon2	c.G204A	p.P68P	AGACCCGCAAAAG	.	232	111	178	0	.	90	A	130912582	G	A	130912582	2	1	30	1	0	0	0	0	0	0	0	1	8684	1074	38	1		1	LCN2	9	130912582	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	95833398	130912582	10300849	45	3462											
C9orf96	169436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136269044	136269044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C9orf96	NM_153710	exon16	c.G1604T	p.G535V	CTGCAGGCTGCAT	.	49	14	34	0	.	334	T	136269044	G	T	136269044	3	4	30	1	0	0	0	0	1	0	0	0	2508	1217	42	3	1666	3	C9orf96	9	136269044	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	5356462	136269044	4944387	46	3463											
SLC34A3	142680	broad.mit.edu;bcgsc.ca	37	9	140127320	140127320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC34A3	NM_001177317	exon5	c.C389T	p.A130V	TCACAGCCCTGGT	.	62	5	48	0	.	90	T	140127320	C	T	140127320	3	4	30	1	0	0	0	0	1	0	0	0	14569	739	26	3	403	3	SLC34A3	9	140127320	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	3858276	140127320	1086111	47	3464											
TUBB8	347688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94784	94784	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TUBB8	NM_177987	exon2	c.G126T	p.L42L	CAGCTGCAGGTGG	.	63	30	38	0	.	69	A	94784	C	A	94784	2	1	30	1	0	0	0	0	0	0	0	1	16758	697	25	3		3	TUBB8	10	94784	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		94784	135439963	48	3465											
EPC1	80314	ucsc.edu;bcgsc.ca	37	10	32576204	32576204	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EPC1	NM_001272004	exon8	c.976-2A>G	.	TCTTGCTGCAACA	.	35	4	37	0	.	93	C	32576204	T	C	32576204	5	2	30	1	0	0	0	0	0	0	1	0	5160	1594	55	2	1572	2	EPC1	10	32576204	Splice_Site	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	32481420	32576204	102958543	49	3466											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	56106175	56106177	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDH15	NM_001142763	exon7	c.557_559del	p.186_187del	TTGGTCCATCATC	.	158	62	135	0	.	193	-	56106177	CAT	-	56106175	7	5	30	1	0	1	0	1	0	0	0	0	11511	603	21	0	7079	0	PCDH15	10	56106175	In_Frame_Del	DEL	CAT	TCGA-CC-A123-01A-11D-A12Z-10	23529971	56106175	79428572	50	3467											
FAM13C	220965	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61029860	61029860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM13C	NM_198215	exon7	c.C602A	p.P201Q	TGGACTGGTGAGG	.	253	127	180	1	.	70	T	61029860	G	T	61029860	3	4	30	1	0	0	0	0	1	0	0	0	5454	1348	47	3	1187	3	FAM13C	10	61029860	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	4923685	61029860	74504887	51	3468											
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75277370	75277370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USP54	NM_152586	exon18	c.A2814G	p.P938P	TGACTCTGGAGAT	.	260	137	170	0	.	721	C	75277370	T	C	75277370	2	2	30	1	0	0	0	0	0	0	0	1	17082	1567	55	2		2	USP54	10	75277370	Silent	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	14247510	75277370	60257377	52	3469											
HMX3	340784	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124896950	124896950	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HMX3	NM_001105574	exon2	c.C777T	p.G259G	AGCCGGCCTGGCC	.	85	33	49	1	.	68	T	124896950	C	T	124896950	2	4	30	1	0	0	0	0	0	0	0	1	7248	726	26	3		3	HMX3	10	124896950	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	49619580	124896950	10637797	53	3470											
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	281055	281055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NLRP6	NM_138329	exon4	c.G1321C	p.D441H	CAGGGCGACCTGC	.	72	17	44	0	.	583	C	281055	G	C	281055	3	2	30	1	0	0	0	0	1	0	0	0	10481	1058	37	4	1335	4	NLRP6	11	281055	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10		281055	134725461	54	3471											
HPS5	11234	broad.mit.edu;bcgsc.ca	37	11	18318512	18318512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HPS5	NM_181507	exon12	c.A1343G	p.D448G	CCAGAGTCCAAGA	.	105	6	107	1	.	133	C	18318512	T	C	18318512	3	2	30	1	0	0	0	0	1	0	0	0	7342	1667	58	2	2094	2	HPS5	11	18318512	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	18037457	18318512	116688004	55	3472											
BBOX1	8424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27137031	27137031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BBOX1	NM_003986	exon6	c.C566A	p.A189E	TCGATGCAAACAA	.	67	24	43	0	.	515	A	27137031	C	A	27137031	3	1	30	1	0	0	0	0	1	0	0	0	1334	710	25	3	580	3	BBOX1	11	27137031	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	8818519	27137031	107869485	56	3473											
DNAJC4	3338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63999389	63999389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAJC4	NM_005528	exon3	c.G133T	p.A45S	CCTGGTGCCAGCA	.	132	39	121	1	.	226	T	63999389	G	T	63999389	3	4	30	1	0	0	0	0	1	0	0	0	4649	1319	46	3	139	3	DNAJC4	11	63999389	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	36862358	63999389	71007127	57	3474											
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3736844	3736844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EFCAB4B	NM_001144958	exon16	c.T1764G	p.N588K	GTCCACATTCAAC	.	59	15	46	0	.	92	C	3736844	A	C	3736844	3	2	30	1	0	0	0	0	1	0	0	0	4937	214	8	5	451	5	EFCAB4B	12	3736844	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10		3736844	130115051	58	3475											
CCND2	894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4383263	4383263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCND2	NM_001759	exon1	c.C57A	p.N19K	CCGCAACCTGCTC	.	75	18	42	0	.	1271	A	4383263	C	A	4383263	3	1	30	1	0	0	0	0	1	0	0	0	2917	506	18	3	59	3	CCND2	12	4383263	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	646419	4383263	129468632	59	3476											
GALNT8	26290	broad.mit.edu;mdanderson.org	37	12	4848462	4848462	+	Nonsense_Mutation	SNP	G	G	T	rs111635477	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GALNT8	NM_017417	exon3	c.G643T	p.E215X	TTGAAGGAAATCA	.	66	32	58	1	G|0.500;A|0.500	230	T	4848462	G	T	4848462	4	4	30	1	0	0	0	0	0	1	0	0	6219	1175	41	3	653	3	GALNT8	12	4848462	Nonsense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	465199	4848462	129003433	60	3477											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	83250808	83250808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMTC2	NM_152588	exon2	c.C103T	p.Q35X	ACTAATCAGGACC	.	158	57	134	0	.	92	T	83250808	C	T	83250808	4	4	30	1	0	0	0	0	0	1	0	0	16258	827	29	3	109	3	TMTC2	12	83250808	Nonsense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	78402346	83250808	50601087	61	3478											
PSPC1	55269	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	20277467	20277467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PSPC1	NM_001042414	exon10	c.C1420A	p.Q474K	CCATCTGAGATGG	.	606	42	655	0	.	135	T	20277467	G	T	20277467	3	4	30	1	0	0	0	0	1	0	0	0	12716	1299	45	3	155	3	PSPC1	13	20277467	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10		20277467	94892411	62	3479											
FLT1	2321	ucsc.edu;bcgsc.ca	37	13	28942733	28942733	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FLT1	NM_001160030	exon15	c.A2184G	p.S728S	TGATGATGACGAT	.	62	6	58	0	.	1406	C	28942733	T	C	28942733	2	2	30	1	0	0	0	0	0	0	0	1	5941	1451	51	2		2	FLT1	13	28942733	Silent	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	8665266	28942733	86227145	63	3480											
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20215599	20215599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4Q3	NM_172194	exon1	c.C13G	p.Q5E	AAAGAACAAGATT	.	821	172	868	0	.	71	G	20215599	C	G	20215599	3	3	30	1	0	0	0	0	1	0	0	0	11081	479	17	4	15	4	OR4Q3	14	20215599	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		20215599	87133941	64	3481											
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20612767	20612767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4N5	NM_001004724	exon1	c.C873A	p.N291K	TCGCAACCAGGAG	.	130	65	106	0	.	69	A	20612767	C	A	20612767	3	1	30	1	0	0	0	0	1	0	0	0	11079	506	18	3	875	3	OR4N5	14	20612767	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	397168	20612767	86736773	65	3482											
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53540463	53540463	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	DDHD1,NS,carcinoma,-2	DDHD1	NM_001160147	exon6	c.T1413C	p.D471D	ACCTCCATCAAGA	.	191	77	214	0	.	92	G	53540463	A	G	53540463	2	3	30	1	0	0	0	0	0	0	0	1	4326	214	8	2		2	DDHD1	14	53540463	Silent	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	32927696	53540463	53809077	66	3483											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64520042	64520042	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SYNE2	NM_182914	exon48	c.C9411T	p.L3137L	AGTTCTCCAAAAC	.	169	68	213	0	.	164	T	64520042	C	T	64520042	2	4	30	1	0	0	0	0	0	0	0	1	15443	842	30	3		3	SYNE2	14	64520042	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	10979579	64520042	42829498	67	3484											
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77746417	77746417	+	Missense_Mutation	SNP	G	G	A	rs148466370		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	POMT2	NM_013382	exon17	c.C1732T	p.R578C	AGAAGCGTAGGCC	.	96	37	74	0	G|1.000;A|0.000	91	A	77746417	G	A	77746417	3	1	30	1	0	0	0	0	1	0	0	0	12246	1145	40	1	540	1	POMT2	14	77746417	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	13226375	77746417	29603123	68	3485											
SHF	90525	ucsc.edu;bcgsc.ca	37	15	45465913	45465913	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SHF	NM_138356	exon5	c.T654C	p.V218V	AATGTCAACTGGA	.	42	4	44	0	.	69	G	45465913	A	G	45465913	2	3	30	1	0	0	0	0	0	0	0	1	14277	144	5	2		2	SHF	15	45465913	Silent	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10		45465913	57065479	69	3486											
CHRNB4	1143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78927919	78927919	+	Silent	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHRNB4	NM_000750	exon2	c.C66G	p.R22R	GGCCACGCGGCAG	.	123	108	49	0	.	90	C	78927919	G	C	78927919	2	2	30	1	0	0	0	0	0	0	0	1	3393	1074	38	4		4	CHRNB4	15	78927919	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	33462006	78927919	23603473	70	3487											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88472662	88472662	+	Silent	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NTRK3	NM_001012338	exon17	c.C1893A	p.A631A	CCCATGGGCCCTG	.	74	39	51	0	.	3538	T	88472662	G	T	88472662	2	4	30	1	0	0	0	0	0	0	0	1	10708	1219	43	3		3	NTRK3	15	88472662	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	9544743	88472662	14058730	71	3488											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	27448870	27448870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL21R	NM_181079	exon5	c.C280A	p.H94N	TCGGCCCACAATG	.	38	27	37	0	.	660	A	27448870	C	A	27448870	3	1	30	1	0	0	0	0	1	0	0	0	7671	594	21	3	224	3	IL21R	16	27448870	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		27448870	62905883	72	3489											
SRCAP	10847	broad.mit.edu;bcgsc.ca	37	16	30721368	30721368	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SRCAP	NM_006662	exon8	c.T1053C	p.S351S	CCCCTCTCAAACC	.	81	5	105	0	.	94	C	30721368	T	C	30721368	2	2	30	1	0	0	0	0	0	0	0	1	15134	1538	54	2		2	SRCAP	16	30721368	Silent	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	3272498	30721368	59633385	73	3490											
ELMO3	79767	ucsc.edu;bcgsc.ca	37	16	67234641	67234641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELMO3	NM_024712	exon7	c.A754G	p.S252G	ACCTTGAGCAGCC	.	40	4	35	1	.	90	G	67234641	A	G	67234641	3	3	30	1	0	0	0	0	1	0	0	0	5067	304	11	2	780	2	ELMO3	16	67234641	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	36513273	67234641	23120112	74	3491											
ZDHHC1	29800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67432171	67432171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZDHHC1	NM_013304	exon8	c.G871C	p.A291P	CCTTGGCCTCCTG	.	92	74	74	0	.	90	G	67432171	C	G	67432171	3	3	30	1	0	0	0	0	1	0	0	0	17597	739	26	4	602	4	ZDHHC1	16	67432171	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	197530	67432171	22922582	75	3492											
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89836314	89836314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCA	NM_000135	exon26	c.T2435C	p.L812P	ACAGGAAGGCCAG	.	44	5	54	1	.	1130	G	89836314	A	G	89836314	3	3	30	1	0	0	0	0	1	0	0	0	5662	72	3	2	2004	2	FANCA	16	89836314	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	22404143	89836314	518439	76	3493											
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3101458	3101458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR1A2	NM_012352	exon1	c.T646C	p.S216P	ATTGTCTCCTATG	.	354	32	620	0	.	70	C	3101458	T	C	3101458	3	2	30	1	0	0	0	0	1	0	0	0	10950	1551	54	2	648	2	OR1A2	17	3101458	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10		3101458	78093752	77	3494											
ACADVL	37	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7126517	7126517	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ACADVL	NM_001270447	exon12	c.G1212A	p.E404E	CCAGGAGAAGCTG	.	90	66	105	1	.	93	A	7126517	G	A	7126517	2	1	30	1	0	0	0	0	0	0	0	1	116	933	33	3		3	ACADVL	17	7126517	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	4025059	7126517	74068693	78	3495											
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12896302	12896302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAC2	NM_018127	exon24	c.G2314C	p.A772P	CGCCAGCAAACAG	.	25	19	16	0	.	90	G	12896302	C	G	12896302	3	3	30	1	0	0	0	0	1	0	0	0	5047	710	25	4	170	4	ELAC2	17	12896302	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	5769785	12896302	68298908	79	3496											
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	34072948	34072948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GAS2L2	NM_139285	exon6	c.C1568T	p.T523I	CCACTTGTAGCAC	.	27	9	14	0	.	227	A	34072948	G	A	34072948	3	1	30	1	0	0	0	0	1	0	0	0	6247	1377	48	3	1078	3	GAS2L2	17	34072948	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	21176646	34072948	47122262	80	3497											
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61784645	61784645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STRADA	NM_001003787	exon9	c.A715G	p.K239E	GAACCTTGACACT	.	73	48	29	0	.	547	C	61784645	T	C	61784645	3	2	30	1	0	0	0	0	1	0	0	0	15323	1821	63	2	658	2	STRADA	17	61784645	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	27711697	61784645	19410565	81	3498											
MYO5B	4645	ucsc.edu;bcgsc.ca	37	18	47367793	47367793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO5B	NM_001080467	exon35	c.T4643C	p.F1548S	AACCAGAATGACG	.	38	4	48	0	.	72	G	47367793	A	G	47367793	3	3	30	1	0	0	0	0	1	0	0	0	10079	246	9	2	927	2	MYO5B	18	47367793	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10		47367793	30709455	82	3499											
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	57026472	57026472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LMAN1	NM_005570	exon1	c.C5T	p.A2V	GATCCCGCCATCT	.	39	27	52	0	.	91	A	57026472	G	A	57026472	3	1	30	1	0	0	0	0	1	0	0	0	8836	1087	38	1	1579	1	LMAN1	18	57026472	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	9658679	57026472	21050776	83	3500											
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2120931	2120931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AP3D1	NM_001261826	exon14	c.A1411C	p.S471R	TGCTGCTGGCCAG	.	66	24	38	0	.	90	G	2120931	T	G	2120931	3	3	30	1	0	0	0	0	1	0	0	0	746	1580	55	5	2276	5	AP3D1	19	2120931	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10		2120931	57008052	84	3501											
SPPL2B	56928	broad.mit.edu;bcgsc.ca	37	19	2345304	2345304	+	RNA	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	TCCAGGGTATACT	.	145	6	80	0	.	.	A	2345304	G	A	2345304	1	1	30	0	1	0	0	0	0	0	0	0	15088	1261	44	3		3	SPPL2B	19	2345304	RNA	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	224373	2345304	56783679	85	3502											
YIPF2	78992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11034659	11034659	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	YIPF2	NM_024029	exon7	c.C501T	p.I167I	GATGCTGATGCCT	.	22	10	27	0	.	90	A	11034659	G	A	11034659	2	1	30	1	0	0	0	0	0	0	0	1	17475	1280	45	3		3	YIPF2	19	11034659	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	8689355	11034659	48094324	86	3503											
ELAVL3	1995	bcgsc.ca;mdanderson.org	37	19	11569052	11569052	+	Silent	SNP	G	G	A	rs114284954	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAVL3	NM_032281	exon5	c.C537T	p.A179A	CTCTTCGGCCTCA	.	84	30	56	1	G|0.996;A|0.004	92	A	11569052	G	A	11569052	2	1	30	1	0	0	0	0	0	0	0	1	5051	1103	39	1		1	ELAVL3	19	11569052	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	534393	11569052	47559931	87	3504											
RFX1	5989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14092957	14092957	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RFX1	NM_002918	exon5	c.C597T	p.T199T	CTGCTGGGTACCA	.	103	50	87	0	.	92	A	14092957	G	A	14092957	2	1	30	1	0	0	0	0	0	0	0	1	13262	1219	43	3		3	RFX1	19	14092957	Silent	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	2523905	14092957	45036026	88	3505											
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36339602	36339602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NPHS1	NM_004646	exon9	c.G1107A	p.R369R	CAGAACCCGCGGG	.	197	50	63	0	.	49	T	36339602	C	T	36339602	2	4	30	1	0	0	0	0	0	0	0	1	10582	610	22	3		3	NPHS1	19	36339602	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	22246645	36339602	22789381	89	3506											
ZNF234	10780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44661606	44661606	+	Silent	SNP	C	C	G	rs182811010	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_006630	exon6	c.C1437G	p.T479T	CCATACCGGTGAG	.	148	42	126	0	C|0.999;T|0.001	.	G	44661606	C	G	44661606	2	3	30	1	0	0	0	0	0	0	0	1	17784	639	23	4		4	ZNF234	19	44661606	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	8322004	44661606	14467377	90	3507											
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914889	46914889	+	Silent	SNP	C	C	T	rs142275307	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.G1179A	p.A393A	GGCCTCCGCCCTC	.	325	141	182	0	C|1.000;T|0.000	93	T	46914889	C	T	46914889	2	4	30	1	0	0	0	0	0	0	0	1	2853	639	23	1		1	CCDC8	19	46914889	Silent	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	2253283	46914889	12214094	91	3508											
JPH2	57158	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	42815335	42815335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	JPH2	NM_175913	exon1	c.G11T	p.G4V	AAGCGGCCCCCAC	.	15	11	9	0	.	91	A	42815335	C	A	42815335	3	1	30	1	0	0	0	0	1	0	0	0	7961	739	26	3	2114	3	JPH2	20	42815335	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		42815335	20210185	92	3509											
ZNF335	63925	broad.mit.edu;bcgsc.ca	37	20	44592119	44592119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF335	NM_022095	exon9	c.C1526T	p.S509L	TTGAGCGAGGACC	.	33	6	28	0	.	94	A	44592119	G	A	44592119	3	1	30	1	0	0	0	0	1	0	0	0	17849	1059	37	1	2582	1	ZNF335	20	44592119	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	1776784	44592119	18433401	93	3510											
STX16	8675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57246217	57246217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STX16	NM_001001433	exon7	c.C656A	p.T219K	GTTTTACAGAGGA	.	129	34	106	1	.	91	A	57246217	C	A	57246217	3	1	30	1	0	0	0	0	1	0	0	0	15338	478	17	3	682	3	STX16	20	57246217	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	12654098	57246217	5779303	94	3511											
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58560154	58560154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDH26	NM_177980	exon7	c.C807A	p.N269K	AGGCAACAACCAC	.	80	20	41	0	.	93	A	58560154	C	A	58560154	3	1	30	1	0	0	0	0	1	0	0	0	3110	477	17	3	833	3	CDH26	20	58560154	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10	1313937	58560154	4465366	95	3512											
CHAF1B	8208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37785409	37785409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHAF1B	NM_005441	exon12	c.C1289A	p.P430H	GCAGCCCCGGCAC	.	54	20	35	0	.	92	A	37785409	C	A	37785409	3	1	30	1	0	0	0	0	1	0	0	0	3312	623	22	3	1331	3	CHAF1B	21	37785409	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		37785409	10344486	96	3513											
MCM3AP	8888	ucsc.edu;bcgsc.ca	37	21	47693478	47693478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MCM3AP	NM_003906	exon7	c.A2020G	p.K674E	ACTCTTTCACAGC	.	30	4	25	0	.	291	C	47693478	T	C	47693478	3	2	30	1	0	0	0	0	1	0	0	0	9388	1792	62	2	4010	2	MCM3AP	21	47693478	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	9908069	47693478	436417	97	3514											
MICAL3	57553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18385513	18385514	+	Splice_Site	DNP	CC	CC	AA	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	CGGATACCTGGGA	.	120	59	123	2	.	.	AA	18385514	CC	AA	18385513	5	1	30	1	0	0	0	0	0	0	1	0	9571	521	18	3	6388	3	MICAL3	22	18385513	Splice_Site	DNP	CC	TCGA-CC-A123-01A-11D-A12Z-10		18385513	32919053	98	3515											
IL17REL	400935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50439551	50439551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL17REL	NM_001001694	exon4	c.C69G	p.C23W	CATCGCGCAGCCG	.	78	46	43	0	.	23	C	50439551	G	C	50439551	3	2	30	1	0	0	0	0	1	0	0	0	7644	1079	38	4	985	4	IL17REL	22	50439551	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	32054038	50439551	865015	99	3516											
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	19017392	19017392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GPR64	NM_001184834	exon26	c.G2336T	p.W779L	TTGATCCAGCAGC	.	209	20	152	0	.	130	A	19017392	C	A	19017392	3	1	30	1	0	0	0	0	1	0	0	0	6705	595	21	3	733	3	GPR64	23	19017392	Missense_Mutation	SNP	C	TCGA-CC-A123-01A-11D-A12Z-10		19017392	136253168	100	3517											
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53588743	53588743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HUWE1	NM_031407	exon55	c.A7481G	p.E2494G	TCAAACTCAATGA	.	171	7	133	0	.	280	C	53588743	T	C	53588743	3	2	30	1	0	0	0	0	1	0	0	0	7461	1551	54	2	5763	2	HUWE1	23	53588743	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	34571351	53588743	101681817	101	3518											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73811891	73811891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RLIM	NM_183353	exon5	c.T1259A	p.M420K	CTGTACATAAAAT	.	185	88	160	0	.	228	T	73811891	A	T	73811891	3	4	30	1	0	0	0	0	1	0	0	0	13390	217	8	4	619	4	RLIM	23	73811891	Missense_Mutation	SNP	A	TCGA-CC-A123-01A-11D-A12Z-10	20223148	73811891	81458669	102	3519											
CYLC1	1538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128877	83128877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYLC1	NM_021118	exon4	c.G1161T	p.L387F	AAATTTGAAGAAA	.	194	102	181	0	.	112	T	83128877	G	T	83128877	3	4	30	1	0	0	0	0	1	0	0	0	4141	1281	45	3	1175	3	CYLC1	23	83128877	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	9316986	83128877	72141683	103	3520											
RAB40A	142684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102755566	102755566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAB40A	NM_080879	exon3	c.A119T	p.E40V	GGGGACTCAGCTG	.	281	104	236	0	.	227	A	102755566	T	A	102755566	3	1	30	1	0	0	0	0	1	0	0	0	12939	1551	54	4	718	4	RAB40A	23	102755566	Missense_Mutation	SNP	T	TCGA-CC-A123-01A-11D-A12Z-10	19626689	102755566	52514994	104	3521											
FRMD7	90167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131212315	131212315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRMD7	NM_194277	exon12	c.C1730T	p.A577V	ACAAATGCATCTT	.	245	113	202	0	.	228	A	131212315	G	A	131212315	3	1	30	1	0	0	0	0	1	0	0	0	6055	1319	46	3	418	3	FRMD7	23	131212315	Missense_Mutation	SNP	G	TCGA-CC-A123-01A-11D-A12Z-10	28456749	131212315	24058245	105	3522											
MSH4	4438	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	76365354	76365354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MSH4	NM_002440	exon19	c.C2582T	p.A861V	TGGATGCCAAGGA	.	733	42	940	1	.	660	T	76365354	C	T	76365354	3	4	31	1	0	0	0	0	1	0	0	0	9872	739	26	3	2656	3	MSH4	1	76365354	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		76365354	172885267	1	3523											
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151108527	151108527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SEMA6C	NM_001178061	exon13	c.C1219A	p.P407T	CAGGTGGTACAGC	.	452	170	284	0	.	92	T	151108527	G	T	151108527	3	4	31	1	0	0	0	0	1	0	0	0	14041	1261	44	3	1701	3	SEMA6C	1	151108527	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	74743173	151108527	98142094	2	3524											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158623173	158623173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPTA1	NM_003126	exon22	c.C3079A	p.P1027T	CAGCTGGGACAAT	.	232	97	203	0	.	142	T	158623173	G	T	158623173	3	4	31	1	0	0	0	0	1	0	0	0	15115	1232	43	3	4304	3	SPTA1	1	158623173	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	7514646	158623173	90627448	3	3525											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185970862	185970862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HMCN1	NM_031935	exon28	c.T4337A	p.I1446N	TTAACATTGATGT	.	189	46	234	0	.	113	A	185970862	T	A	185970862	3	1	31	1	0	0	0	0	1	0	0	0	7220	1493	52	4	4447	4	HMCN1	1	185970862	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	27347689	185970862	63279759	4	3526											
COG2	22796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230819335	230819335	+	Silent	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COG2	NM_007357	exon11	c.G1182C	p.A394A	AATAGCGGGATCC	.	155	12	160	0	.	90	C	230819335	G	C	230819335	2	2	31	1	0	0	0	0	0	0	0	1	3658	1103	39	4		4	COG2	1	230819335	Silent	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	44848473	230819335	18431286	5	3527											
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247614391	247614391	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR2B11	NM_001004492	exon1	c.T894C	p.N298N	ATCTTTATTTCTC	.	186	28	202	0	.	69	G	247614391	A	G	247614391	2	3	31	1	0	0	0	0	0	0	0	1	10988	446	16	2		2	OR2B11	1	247614391	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	16795056	247614391	1636230	6	3528											
OR2W3	343171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248059698	248059698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR2W3	NM_001001957	exon1	c.G810T	p.Q270H	GGACCAGGGCATG	.	269	69	292	1	.	115	T	248059698	G	T	248059698	3	4	31	1	0	0	0	0	1	0	0	0	11033	991	35	3	812	3	OR2W3	1	248059698	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	445307	248059698	1190923	7	3529											
ACP1	52	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	277013	277013	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACP1	NM_007099	exon5	c.C327T	p.T109T	TAAAACCTGCAAA	.	241	39	277	0	.	523	T	277013	C	T	277013	2	4	31	1	0	0	0	0	0	0	0	1	162	668	24	3		3	ACP1	2	277013	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		277013	242922360	8	3530											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1812887	1812887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYT1L	NM_015025	exon22	c.G3127A	p.G1043R	GCTCTCCAGAAAG	.	170	26	197	0	.	95	T	1812887	C	T	1812887	3	4	31	1	0	0	0	0	1	0	0	0	10107	603	21	3	443	3	MYT1L	2	1812887	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	1535874	1812887	241386486	9	3531											
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32859027	32859027	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTC27	NM_017735	exon3	c.C351T	p.H117H	CTTACACCCTCAG	.	461	74	456	0	.	90	T	32859027	C	T	32859027	2	4	31	1	0	0	0	0	0	0	0	1	16692	506	18	3		3	TTC27	2	32859027	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	31046140	32859027	210340346	10	3532											
GMCL1	64395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70066643	70066643	+	Missense_Mutation	SNP	A	A	G	rs147534979	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GMCL1	NM_178439	exon3	c.A439G	p.I147V	ATGAATATTATTG	.	484	97	592	1	A|0.999;G|0.001	93	G	70066643	A	G	70066643	3	3	31	1	0	0	0	0	1	0	0	0	6485	449	16	2	449	2	GMCL1	2	70066643	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	37207616	70066643	173132730	11	3533											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141812802	141812802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRP1B	NM_018557	exon10	c.C1435T	p.P479S	CATATGGATCGAC	.	167	22	167	0	.	311	A	141812802	G	A	141812802	3	1	31	1	0	0	0	0	1	0	0	0	8955	1174	41	3	12692	3	LRP1B	2	141812802	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	71746159	141812802	101386571	12	3534											
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165551580	165551580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COBLL1	NM_014900	exon12	c.A2436T	p.K812N	AGTTTCTTTCACA	.	325	60	396	0	.	93	A	165551580	T	A	165551580	3	1	31	1	0	0	0	0	1	0	0	0	3654	1606	56	4	1076	4	COBLL1	2	165551580	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	23738778	165551580	77647793	13	3535											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179395002	179395002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTN	NM_001267550	exon358	c.C106340G	p.P35447R	GGCCGGGGTTCTC	.	134	21	131	0	.	636	C	179395002	G	C	179395002	3	2	31	1	0	0	0	0	1	0	0	0	16732	1232	43	4	1659	4	TTN	2	179395002	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	13843422	179395002	63804371	14	3536											
PLCL1	5334	broad.mit.edu;bcgsc.ca	37	2	198950191	198950191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLCL1	NM_006226	exon2	c.T1950A	p.D650E	GATCGATTCCAGT	.	153	7	164	1	.	228	A	198950191	T	A	198950191	3	1	31	1	0	0	0	0	1	0	0	0	12039	1490	52	4	1956	4	PLCL1	2	198950191	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	19555189	198950191	44249182	15	3537											
TNP1	7141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217724619	217724619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNP1	NM_003284	exon1	c.G139T	p.A47S	ACTCACCGTCATC	.	226	37	221	0	.	90	A	217724619	C	A	217724619	3	1	31	1	0	0	0	0	1	0	0	0	16330	666	23	1	36	1	TNP1	2	217724619	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	18774428	217724619	25474754	16	3538											
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9991578	9991578	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRRT3	NM_207351	exon2	c.T222C	p.D74D	GCGGACATCAGAG	.	120	25	90	0	.	90	G	9991578	A	G	9991578	2	3	31	1	0	0	0	0	0	0	0	1	12611	214	8	2		2	PRRT3	3	9991578	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10		9991578	188030852	17	3539											
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu	37	3	11606425	11606426	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VGLL4	NM_001128219	exon3	c.340_341del	p.114_114del	GCCACAGCGCGCT	.	105	11	80	0	.	91	-	11606426	GC	-	11606425	7	5	31	1	0	1	0	1	0	0	0	0	17158	971	34	0	561	0	VGLL4	3	11606425	Frame_Shift_Del	DEL	GC	TCGA-CC-A1HT-01A-11D-A12Z-10	1614847	11606425	186416005	18	3540											
TMEM115	11070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50396005	50396005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM115	NM_007024	exon1	c.G490A	p.V164M	CGCGCACCTGGGG	.	24	7	24	0	.	278	T	50396005	C	T	50396005	3	4	31	1	0	0	0	0	1	0	0	0	16026	507	18	3	573	3	TMEM115	3	50396005	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	38789580	50396005	147626425	19	3541											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138426053	138426053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PIK3CB	NM_006219	exon9	c.T1478C	p.V493A	AATTTAACATGCA	.	265	34	257	0	.	1311	G	138426053	A	G	138426053	3	3	31	1	0	0	0	0	1	0	0	0	11914	43	2	2	1788	2	PIK3CB	3	138426053	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	88030048	138426053	59596377	20	3542											
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140401304	140401304	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM42	NM_152616	exon2	c.C342A	p.S114S	TTTCAGCTCCAAG	.	119	15	111	0	.	227	A	140401304	C	A	140401304	2	1	31	1	0	0	0	0	0	0	0	1	16514	811	28	3		3	TRIM42	3	140401304	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	1975251	140401304	57621126	21	3543											
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148923993	148923993	+	Missense_Mutation	SNP	T	T	C	rs201036476		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CP	NM_000096	exon6	c.A1170G	p.I390M	GATGTCTATACCA	.	253	62	267	0	T|0.999;C|0.001	515	C	148923993	T	C	148923993	3	2	31	1	0	0	0	0	1	0	0	0	3787	1512	53	2	2083	2	CP	3	148923993	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	8522689	148923993	49098437	22	3544											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154890002	154890002	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MME	NM_000902	exon21	c.2076+1G>T	.	GCACAGGTATTGT	.	827	132	1098	0	.	516	T	154890002	G	T	154890002	5	4	31	1	0	0	0	0	0	0	1	0	9645	1275	44	3	2155	3	MME	3	154890002	Splice_Site	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	5966009	154890002	43132428	23	3545											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184045645	184045645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EIF4G1	NM_001194946	exon27	c.G3829A	p.A1277T	GAGCTGGCCTCAC	.	109	33	106	0	.	344	A	184045645	G	A	184045645	3	1	31	1	0	0	0	0	1	0	0	0	5036	1203	42	3	3902	3	EIF4G1	3	184045645	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	29155643	184045645	13976785	24	3546											
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66361224	66361224	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA5	NM_004439	exon4	c.C948T	p.I316I	GCTCTGGATGTGA	.	209	37	216	0	.	1430	A	66361224	G	A	66361224	2	1	31	1	0	0	0	0	0	0	0	1	5170	1164	41	3		3	EPHA5	4	66361224	Silent	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		66361224	124793052	25	3547											
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346814	71346814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC7	NM_001145007	exon4	c.C353T	p.S118L	TCCCATCAGCTTC	.	160	31	171	0	.	93	T	71346814	C	T	71346814	3	4	31	1	0	0	0	0	1	0	0	0	9981	838	29	3	359	3	MUC7	4	71346814	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	4985590	71346814	119807462	26	3548											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	79328918	79328918	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRAS1	NM_001166133	exon31	c.C4231T	p.Q1411X	TTCACCCAGCAGG	.	207	27	162	0	.	68	T	79328918	C	T	79328918	4	4	31	1	0	0	0	0	0	1	0	0	6042	595	21	3	4353	3	FRAS1	4	79328918	Nonsense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	7982104	79328918	111825358	27	3549											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79455713	79455713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRAS1	NM_025074	exon71	c.C11036T	p.P3679L	TGGATCCCAATAC	.	133	20	133	0	.	68	T	79455713	C	T	79455713	3	4	31	1	0	0	0	0	1	0	0	0	6042	623	22	3	11393	3	FRAS1	4	79455713	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	126795	79455713	111698563	28	3550											
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104640417	104640417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TACR3	NM_001059	exon1	c.C416A	p.T139K	ACCAACGTGTTGA	.	128	17	128	0	.	525	T	104640417	G	T	104640417	3	4	31	1	0	0	0	0	1	0	0	0	15504	1145	40	1	1001	1	TACR3	4	104640417	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	25184704	104640417	86513859	29	3551											
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119154261	119154261	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NDST3	NM_004784	exon9	c.T1914C	p.N638N	CTTTAATAGAAAT	.	238	45	234	0	.	153	C	119154261	T	C	119154261	2	2	31	1	0	0	0	0	0	0	0	1	10257	1403	49	2		2	NDST3	4	119154261	Silent	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	14513844	119154261	72000015	30	3552											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155226013	155226013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DCHS2	NM_017639	exon17	c.G4048T	p.G1350X	GGAATCCCCCATC	.	314	47	409	0	.	94	A	155226013	C	A	155226013	4	1	31	1	0	0	0	0	0	1	0	0	4288	632	22	3	4738	3	DCHS2	4	155226013	Nonsense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	36071752	155226013	35928263	31	3553											
ENPP6	133121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185038169	185038169	+	Missense_Mutation	SNP	C	C	T	rs139781867	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ENPP6	NM_153343	exon5	c.G695A	p.R232H	TTCAGGCGGTCCT	.	168	31	130	0	C|0.999;T|0.001	90	T	185038169	C	T	185038169	3	4	31	1	0	0	0	0	1	0	0	0	5134	768	27	1	643	1	ENPP6	4	185038169	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	29812156	185038169	6116107	32	3554											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140210049	140210049	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHA6	NM_018909	exon1	c.A2373G	p.L791L	GGATTTAAATGAA	.	153	12	133	0	.	92	G	140210049	A	G	140210049	2	3	31	1	0	0	0	0	0	0	0	1	11528	359	13	2		2	PCDHA6	5	140210049	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10		140210049	40705211	33	3555											
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140432442	140432442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHB1	NM_013340	exon1	c.G1387A	p.E463K	GTTCGAGAAAACA	.	147	23	146	0	.	90	A	140432442	G	A	140432442	3	1	31	1	0	0	0	0	1	0	0	0	11534	943	33	3	1389	3	PCDHB1	5	140432442	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	222393	140432442	40482818	34	3556											
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140753695	140753695	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHGA6	NM_018919	exon1	c.G45T	p.L15L	GGTCCTGCTCCTC	.	176	47	122	0	.	67	T	140753695	G	T	140753695	2	4	31	1	0	0	0	0	0	0	0	1	11558	1306	46	3		3	PCDHGA6	5	140753695	Silent	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	321253	140753695	40161565	35	3557											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	169483728	169483728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	DOCK2,NS,carcinoma,-1	DOCK2	NM_004946	exon43	c.C4336T	p.R1446W	TACTCCCGGCCCG	.	215	16	175	1	.	97	T	169483728	C	T	169483728	3	4	31	1	0	0	0	0	1	0	0	0	4687	643	23	1	4506	1	DOCK2	5	169483728	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	28730033	169483728	11431532	36	3558											
CAP2	10486	broad.mit.edu;bcgsc.ca	37	6	17514111	17514111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CAP2	NM_006366	exon7	c.T562C	p.Y188H	AAGTCATATTTGA	.	153	10	163	1	.	91	C	17514111	T	C	17514111	3	2	31	1	0	0	0	0	1	0	0	0	2620	1406	49	2	584	2	CAP2	6	17514111	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10		17514111	153600956	37	3559											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38781906	38781906	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAH8	NM_001206927	exon25	c.3333+1G>T	.	AATGTGGTAAGTA	.	146	21	147	0	.	615	T	38781906	G	T	38781906	5	4	31	1	0	0	0	0	0	0	1	0	4607	1275	44	3	2765	3	DNAH8	6	38781906	Splice_Site	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	21267795	38781906	132333161	38	3560											
COL21A1	81578	broad.mit.edu;bcgsc.ca	37	6	56035645	56035645	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COL21A1	NM_030820	exon5	c.T828C	p.G276G	AGGAAGACCTTCT	.	87	5	117	0	.	24	G	56035645	A	G	56035645	2	3	31	1	0	0	0	0	0	0	0	1	3680	262	10	2		2	COL21A1	6	56035645	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	17253739	56035645	115079422	39	3561											
TMEM30A	55754	ucsc.edu;bcgsc.ca	37	6	75974945	75974945	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM30A	NM_018247	exon4	c.453+2T>A	.	TTACTTACAAGCA	.	45	4	54	0	.	90	T	75974945	A	T	75974945	5	4	31	1	0	0	0	0	0	0	1	0	16150	405	14	4	650	4	TMEM30A	6	75974945	Splice_Site	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	19939300	75974945	95140122	40	3562											
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	94124469	94124469	+	Silent	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA7	NM_004440	exon2	c.T114A	p.S38S	TGCTTTAGAATCC	.	71	10	97	0	.	1453	T	94124469	A	T	94124469	2	4	31	1	0	0	0	0	0	0	0	1	5172	407	15	4		4	EPHA7	6	94124469	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	18149524	94124469	76990598	41	3563											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152674871	152674871	+	Missense_Mutation	SNP	G	G	T	rs201704617	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SYNE1	NM_182961	exon68	c.C10935A	p.H3645Q	TTCTTCGTGCCAC	.	132	21	122	0	G|0.999;A|0.001	607	T	152674871	G	T	152674871	3	4	31	1	0	0	0	0	1	0	0	0	15442	1136	40	1	15847	1	SYNE1	6	152674871	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	58550402	152674871	18440196	42	3564											
FNDC1	84624	broad.mit.edu;bcgsc.ca	37	6	159655417	159655417	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FNDC1	NM_032532	exon11	c.C3873T	p.S1291S	CTTCTCCACCACC	.	246	11	180	0	.	138	T	159655417	C	T	159655417	2	4	31	1	0	0	0	0	0	0	0	1	5968	581	21	3		3	FNDC1	6	159655417	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	6980546	159655417	11459650	43	3565											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1517435	1517435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001080453	exon34	c.G4768A	p.E1590K	CCTCCTCCTGCAG	.	165	21	93	0	.	.	T	1517435	C	T	1517435	3	4	31	1	0	0	0	0	1	0	0	0	7775	864	30	3	1864	3	INTS1	7	1517435	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		1517435	157621228	44	3566											
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20445703	20445703	+	Silent	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITGB8	NM_002214	exon12	c.T1932A	p.L644L	ATGCCTTCACCCT	.	141	25	145	0	.	227	A	20445703	T	A	20445703	2	1	31	1	0	0	0	0	0	0	0	1	7901	1770	62	4		4	ITGB8	7	20445703	Silent	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	18928268	20445703	138692960	45	3567											
PDE1C	5137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31877505	31877505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PDE1C	NM_001191058	exon11	c.C1241T	p.T414I	AGAGCAGTCTTCA	.	117	11	109	0	.	94	A	31877505	G	A	31877505	3	1	31	1	0	0	0	0	1	0	0	0	11635	1029	36	3	875	3	PDE1C	7	31877505	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	11431802	31877505	127261158	46	3568											
PION	54103	ucsc.edu;bcgsc.ca	37	7	76982931	76982931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PION	NM_017439	exon17	c.T1366C	p.S456P	AGGCAGAGACATT	.	47	4	70	0	.	514	G	76982931	A	G	76982931	3	3	31	1	0	0	0	0	1	0	0	0	11934	304	11	2	1258	2	PION	7	76982931	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	45105426	76982931	82155732	47	3569											
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87196165	87196165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ABCB1	NM_000927	exon7	c.A466T	p.M156L	GTCGCATTATAGC	.	133	23	147	0	.	582	A	87196165	T	A	87196165	3	1	31	1	0	0	0	0	1	0	0	0	40	1493	52	4	3468	4	ABCB1	7	87196165	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	10213234	87196165	71942498	48	3570											
SRPK2	6733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104787043	104787043	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SRPK2	NM_182692	exon8	c.G684A	p.P228P	ATTTTCCGGCTTT	.	277	27	312	2	.	805	T	104787043	C	T	104787043	2	4	31	1	0	0	0	0	0	0	0	1	15159	639	23	1		1	SRPK2	7	104787043	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	17590878	104787043	54351620	49	3571											
KCND2	3751	broad.mit.edu;bcgsc.ca	37	7	120382615	120382615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	KCND2,brain,glioma,-2	KCND2	NM_012281	exon4	c.A1426G	p.T476A	TTTGAAACCCAGC	.	200	10	186	0	.	517	G	120382615	A	G	120382615	3	3	31	1	0	0	0	0	1	0	0	0	8019	43	2	2	1440	2	KCND2	7	120382615	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	15595572	120382615	38756048	50	3572											
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122787291	122787291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC13A1	NM_022444	exon7	c.C734G	p.A245G	GAGTAGGCAATGC	.	168	29	163	0	.	92	C	122787291	G	C	122787291	3	2	31	1	0	0	0	0	1	0	0	0	14391	1203	42	4	1089	4	SLC13A1	7	122787291	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	2404676	122787291	36351372	51	3573											
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135269705	135269705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NUP205	NM_015135	exon8	c.C1168T	p.R390C	TATATTCGCAGAG	.	153	18	161	0	.	207	T	135269705	C	T	135269705	3	4	31	1	0	0	0	0	1	0	0	0	10759	884	31	1	1198	1	NUP205	7	135269705	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	12482414	135269705	23868958	52	3574											
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154263941	154263941	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DPP6	NM_130797	exon5	c.C567T	p.A189A	AAGAGCCATCAGA	.	127	15	185	0	.	652	T	154263941	C	T	154263941	2	4	31	1	0	0	0	0	0	0	0	1	4730	581	21	3		3	DPP6	7	154263941	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	18994236	154263941	4874722	53	3575											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3081364	3081364	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSMD1	NM_033225	exon28	c.C4371A	p.G1457G	TGCTGGGCCCGTC	.	169	18	188	0	.	86	T	3081364	G	T	3081364	2	4	31	1	0	0	0	0	0	0	0	1	3944	1190	42	3		3	CSMD1	8	3081364	Silent	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		3081364	143282658	54	3576											
CHRNB3	1142	ucsc.edu;bcgsc.ca	37	8	42587687	42587687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHRNB3	NM_000749	exon5	c.A1237G	p.S413G	TTTATCAGCCAGG	.	59	5	82	0	.	91	G	42587687	A	G	42587687	3	3	31	1	0	0	0	0	1	0	0	0	3392	188	7	2	1255	2	CHRNB3	8	42587687	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	39506323	42587687	103776335	55	3577											
MYBL1	4603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67492397	67492397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYBL1	NM_001080416	exon9	c.T1072C	p.F358L	CTGCAAATTCTGG	.	206	20	111	0	.	395	G	67492397	A	G	67492397	3	3	31	1	0	0	0	0	1	0	0	0	10009	101	4	2	1218	2	MYBL1	8	67492397	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	24904710	67492397	78871625	56	3578											
SGK3	23678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67752248	67752248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SGK3	NM_001033578	exon11	c.A752G	p.H251R	TTTTCCACTTACA	.	183	72	145	1	.	1003	G	67752248	A	G	67752248	3	3	31	1	0	0	0	0	1	0	0	0	14212	159	6	2	790	2	SGK3	8	67752248	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	259851	67752248	78611774	57	3579											
CYP11B2	1585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143993483	143993483	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CYP11B2	NM_000498	exon9	c.A1425G	p.T475T	AGTTAGTGTCTCC	.	262	95	215	1	.	90	C	143993483	T	C	143993483	2	2	31	1	0	0	0	0	0	0	0	1	4146	1683	59	2		2	CYP11B2	8	143993483	Silent	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	76241235	143993483	2370539	58	3580											
DNAI1	27019	broad.mit.edu;bcgsc.ca	37	9	34506717	34506717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAI1	NM_012144	exon13	c.G1156A	p.V386I	AGCGGCGTCATGT	.	188	8	160	1	.	90	A	34506717	G	A	34506717	3	1	31	1	0	0	0	0	1	0	0	0	4609	1145	40	1	1206	1	DNAI1	9	34506717	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		34506717	106706714	59	3581											
ALG2	85365	ucsc.edu;bcgsc.ca	37	9	101981028	101981028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALG2	NM_033087	exon2	c.A439G	p.R147G	AATCTCTCTTGGT	.	40	4	65	0	.	92	C	101981028	T	C	101981028	3	2	31	1	0	0	0	0	1	0	0	0	519	1559	54	2	815	2	ALG2	9	101981028	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	67474311	101981028	39232403	60	3582											
TEX10	54881	broad.mit.edu;bcgsc.ca	37	9	103090078	103090078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TEX10	NM_001161584	exon8	c.C1801G	p.R601G	AAATTCGGAGGGC	.	235	14	292	0	.	92	C	103090078	G	C	103090078	3	2	31	1	0	0	0	0	1	0	0	0	15769	1124	39	4	1029	4	TEX10	9	103090078	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	1109050	103090078	38123353	61	3583											
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135537950	135537950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX31	NM_022779	exon2	c.G523A	p.A175T	TTTGTGCGTTCCC	.	271	22	319	0	.	226	T	135537950	C	T	135537950	3	4	31	1	0	0	0	0	1	0	0	0	4356	768	27	1	2115	1	DDX31	9	135537950	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	32447872	135537950	5675481	62	3584											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32582635	32582635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPC1	NM_001272004	exon3	c.A344G	p.Y115C	AAATCATAATCAG	.	260	37	210	0	.	93	C	32582635	T	C	32582635	3	2	31	1	0	0	0	0	1	0	0	0	5160	1406	49	2	2218	2	EPC1	10	32582635	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10		32582635	102952112	63	3585											
RASSF4	83937	ucsc.edu;bcgsc.ca	37	10	45479554	45479554	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RASSF4	NM_032023	exon5	c.C366T	p.D122D	CACAGACAGCTCG	.	39	4	27	0	.	290	T	45479554	C	T	45479554	2	4	31	1	0	0	0	0	0	0	0	1	13088	477	17	3		3	RASSF4	10	45479554	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	12896919	45479554	90055193	64	3586											
LIPJ	142910	ucsc.edu;bcgsc.ca	37	10	90351178	90351178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LIPJ	NM_001010939	exon4	c.A53G	p.D18G	AATATGATATTGT	.	41	4	101	0	.	91	G	90351178	A	G	90351178	3	3	31	1	0	0	0	0	1	0	0	0	8826	333	12	2	59	2	LIPJ	10	90351178	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	44871624	90351178	45183569	65	3587											
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	418530	418530	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANO9	NM_001012302	exon23	c.G2190A	p.S730S	CTTCACCGACTGA	.	137	15	139	0	.	227	T	418530	C	T	418530	2	4	31	1	0	0	0	0	0	0	0	1	704	639	23	1		1	ANO9	11	418530	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		418530	134587986	66	3588											
FNBP4	23360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47744730	47744730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FNBP4	NM_015308	exon15	c.C2603A	p.A868E	GCAGGTGCTGCCG	.	237	35	238	1	.	91	T	47744730	G	T	47744730	3	4	31	1	0	0	0	0	1	0	0	0	5967	1319	46	3	462	3	FNBP4	11	47744730	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	47326200	47744730	87261786	67	3589											
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55541610	55541610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR5D13	NM_001001967	exon1	c.G697A	p.A233T	CGATCTGCAAGTG	.	189	17	170	0	.	71	A	55541610	G	A	55541610	3	1	31	1	0	0	0	0	1	0	0	0	11154	1319	46	3	699	3	OR5D13	11	55541610	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	7796880	55541610	79464906	68	3590											
FAM111B	374393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58893210	58893210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM111B	NM_198947	exon4	c.T1640G	p.I547S	ATGCCATTTTAAA	.	69	14	90	0	.	92	G	58893210	T	G	58893210	3	3	31	1	0	0	0	0	1	0	0	0	5400	1493	52	5	1646	5	FAM111B	11	58893210	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	3351600	58893210	76113306	69	3591											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92085831	92085831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAT3	NM_001008781	exon1	c.G553T	p.A185S	ACAGACGCAGATA	.	86	14	108	0	.	73	T	92085831	G	T	92085831	3	4	31	1	0	0	0	0	1	0	0	0	5691	1087	38	1	555	1	FAT3	11	92085831	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	33192621	92085831	42920685	70	3592											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105842667	105842667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRIA4	NM_000829	exon15	c.A2321C	p.K774T	TTTTGAAACTCAG	.	201	40	164	1	.	230	C	105842667	A	C	105842667	3	2	31	1	0	0	0	0	1	0	0	0	6770	14	1	5	2531	5	GRIA4	11	105842667	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	13756836	105842667	29163849	71	3593											
ST14	6768	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130067803	130067803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ST14	NM_021978	exon12	c.G1422T	p.W474C	TGGCTGGGCCGAC	.	65	9	48	0	.	94	T	130067803	G	T	130067803	3	4	31	1	0	0	0	0	1	0	0	0	15210	1241	43	3	1468	3	ST14	11	130067803	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	24225136	130067803	4938713	72	3594											
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5603521	5603521	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NTF3	NM_001102654	exon2	c.G180A	p.K60K	AAACAAGCTCTCC	.	54	10	68	0	.	205	A	5603521	G	A	5603521	2	1	31	1	0	0	0	0	0	0	0	1	10696	962	34	3		3	NTF3	12	5603521	Silent	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		5603521	128248374	73	3595											
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7967043	7967043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC2A14	NM_153449	exon12	c.C1432T	p.R478C	TGCCACGGGTCTC	.	195	15	202	0	.	91	A	7967043	G	A	7967043	3	1	31	1	0	0	0	0	1	0	0	0	14543	1116	39	1	134	1	SLC2A14	12	7967043	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	2363522	7967043	125884852	74	3596											
SLCO1A2	6579	broad.mit.edu;bcgsc.ca	37	12	21445184	21445184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLCO1A2	NM_134431	exon13	c.G1524T	p.L508F	GAGCATCAAGGAA	.	85	7	89	0	.	157	A	21445184	C	A	21445184	3	1	31	1	0	0	0	0	1	0	0	0	14722	825	29	3	504	3	SLCO1A2	12	21445184	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	13478141	21445184	112406711	75	3597											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31605091	31605092	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DENND5B	NM_144973	exon5	c.1412_1413insA	p.M471fs	AGGTCCATTTTTT	.	269	42	227	0	.	24	T	31605092	-	T	31605091	7	5	31	1	0	1	1	0	0	0	0	0	4437	217	8	0	2480	0	DENND5B	12	31605091	Frame_Shift_Ins	INS	-	TCGA-CC-A1HT-01A-11D-A12Z-10	10159907	31605091	102246804	76	3598											
TMBIM6	7009	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50152248	50152248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMBIM6	NM_001098576	exon6	c.T592C	p.Y198H	CGTAGCTACCTCT	.	206	26	205	1	.	90	C	50152248	T	C	50152248	3	2	31	1	0	0	0	0	1	0	0	0	15980	1522	53	2	614	2	TMBIM6	12	50152248	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	18547157	50152248	83699647	77	3599											
IKBIP	121457	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99019886	99019886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IKBIP	NM_153687	exon3	c.T956C	p.M319T	ATCTCCATTATTT	.	421	70	571	1	.	226	G	99019886	A	G	99019886	3	3	31	1	0	0	0	0	1	0	0	0	7609	217	8	2	941	2	IKBIP	12	99019886	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	48867638	99019886	34832009	78	3600											
GOLGA3	2802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133358985	133358985	+	Missense_Mutation	SNP	A	A	C	rs79085716		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GOLGA3	NM_005895	exon17	c.T3362G	p.L1121R	CCCGTAAGCTTCC	.	394	65	393	1	A|0.999;C|0.001	95	C	133358985	A	C	133358985	3	2	31	1	0	0	0	0	1	0	0	0	6554	72	3	5	1166	5	GOLGA3	12	133358985	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	34339099	133358985	492910	79	3601											
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28883065	28883065	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FLT1	NM_002019	exon29	c.3636-1G>C	.	ACGTATCTAATGA	.	67	8	71	0	.	1406	G	28883065	C	G	28883065	5	3	31	1	0	0	0	0	0	0	1	0	5941	927	32	4	393	4	FLT1	13	28883065	Splice_Site	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		28883065	86286813	80	3602											
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	72204825	72204825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DACH1	NM_080759	exon3	c.C995A	p.A332D	GCAGCAGCTGCTG	.	118	39	100	0	.	135	T	72204825	G	T	72204825	3	4	31	1	0	0	0	0	1	0	0	0	4220	971	34	3	1167	3	DACH1	13	72204825	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	43321760	72204825	42965053	81	3603											
PLEK2	26499	ucsc.edu;bcgsc.ca	37	14	67862126	67862126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLEK2	NM_016445	exon3	c.A382G	p.S128G	GCAGGCTGATGTG	.	47	5	47	1	.	92	C	67862126	T	C	67862126	3	2	31	1	0	0	0	0	1	0	0	0	12054	1580	55	2	707	2	PLEK2	14	67862126	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10		67862126	39487414	82	3604											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43749109	43749109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TP53BP1	NM_001141980	exon12	c.C1697G	p.P566R	TCAGCAGGAACAA	.	174	34	204	0	.	294	C	43749109	G	C	43749109	3	2	31	1	0	0	0	0	1	0	0	0	16380	1000	35	4	4304	4	TP53BP1	15	43749109	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		43749109	58782283	83	3605											
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83926506	83926506	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BNC1	NM_001717	exon5	c.T2673C	p.D891D	GTTCCCATCACTG	.	90	23	84	0	.	93	G	83926506	A	G	83926506	2	3	31	1	0	0	0	0	0	0	0	1	1474	214	8	2		2	BNC1	15	83926506	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	40177397	83926506	18604886	84	3606											
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	96875607	96875608	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NR2F2	NM_021005	exon1	c.273_274del	p.91_92del	GCACTACGGCCAG	.	100	15	100	0	.	228	-	96875608	CG	-	96875607	7	5	31	1	0	1	0	1	0	0	0	0	10628	547	19	0	322	0	NR2F2	15	96875607	Frame_Shift_Del	DEL	CG	TCGA-CC-A1HT-01A-11D-A12Z-10	12949101	96875607	5655785	85	3607											
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	601376	601376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SOLH	NM_005632	exon8	c.G2141A	p.R714H	GCCTGCGCCCCCG	.	44	7	27	0	.	523	A	601376	G	A	601376	3	1	31	1	0	0	0	0	1	0	0	0	14925	1087	38	1	2159	1	SOLH	16	601376	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		601376	89753377	86	3608											
WDR24	84219	ucsc.edu;bcgsc.ca	37	16	736891	736891	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	WDR24	NM_032259	exon3	c.T1185C	p.S395S	GAGGGCACTGGAG	.	29	4	32	0	.	91	G	736891	A	G	736891	2	3	31	1	0	0	0	0	0	0	0	1	17278	156	6	2		2	WDR24	16	736891	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	135515	736891	89617862	87	3609											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70884548	70884548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HYDIN	NM_001270974	exon74	c.G12454A	p.D4152N	AAATATCAATTGG	.	134	20	162	0	.	92	T	70884548	C	T	70884548	3	4	31	1	0	0	0	0	1	0	0	0	7467	826	29	3	2963	3	HYDIN	16	70884548	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	70147657	70884548	19470205	88	3610											
FGF11	2256	broad.mit.edu;mdanderson.org	37	17	7343007	7343007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FGF11	NM_004112	exon1	c.C68T	p.P23L	GCCGGCCGGTGTC	.	34	5	12	0	.	522	T	7343007	C	T	7343007	3	4	31	1	0	0	0	0	1	0	0	0	5840	652	23	1	70	1	FGF11	17	7343007	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		7343007	73852203	89	3611											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	TP53,NS,carcinoma,0	TP53	NM_000546	exon6	c.376-1G>A	.	GGAGTACTGTAGG	.	50	8	56	0	.	70225	T	7578555	C	T	7578555	5	4	31	1	0	0	0	0	0	0	1	0	16378	579	20	3	923	3	TP53	17	7578555	Splice_Site	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	235548	7578555	73616655	90	3612											
KRT14	3861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39742690	39742690	+	Missense_Mutation	SNP	C	C	T	rs61027685	bycluster	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KRT14	NM_000526	exon1	c.G397A	p.V133M	CACGCACCTTGTC	.	225	48	200	0	.	91	T	39742690	C	T	39742690	3	4	31	1	0	0	0	0	1	0	0	0	8451	507	18	3	1053	3	KRT14	17	39742690	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	32164135	39742690	41452520	91	3613											
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40961398	40961398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CNTD1	NM_173478	exon7	c.C838A	p.Q280K	CATTTGCAGAGCA	.	220	42	207	0	.	90	A	40961398	C	A	40961398	3	1	31	1	0	0	0	0	1	0	0	0	3635	711	25	3	864	3	CNTD1	17	40961398	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	1218708	40961398	40233812	92	3614											
AXIN2	8313	hgsc.bcm.edu;bcgsc.ca	37	17	63545764	63545765	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AXIN2	NM_004655	exon3	c.829_830del	p.277_277del	GGATCGCTCCTCT	.	95	14	127	0	.	658	-	63545765	CT	-	63545764	7	5	31	1	0	1	0	1	0	0	0	0	1237	797	28	0	1737	0	AXIN2	17	63545764	Frame_Shift_Del	DEL	CT	TCGA-CC-A1HT-01A-11D-A12Z-10	22584366	63545764	17649446	93	3615											
CDR2L	30850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72998268	72998268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_014603	exon4	c.C451T	p.R151C	CGGGAACGCAGGC	.	80	18	39	0	.	.	T	72998268	C	T	72998268	3	4	31	1	0	0	0	0	1	0	0	0	3173	536	19	1	465	1	CDR2L	17	72998268	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	9452504	72998268	8196942	94	3616											
LLGL2	3993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73569581	73569581	+	Silent	SNP	C	C	G	rs144386071	byfrequency;alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LLGL2	NM_004524	exon21	c.C2745G	p.P915P	CTCACCCTCGGAG	.	254	40	224	0	C|0.997;T|0.003	251	G	73569581	C	G	73569581	2	3	31	1	0	0	0	0	0	0	0	1	8834	668	24	4		4	LLGL2	17	73569581	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	571313	73569581	7625629	95	3617											
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7505118	7505118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGEF18	NM_001130955	exon1	c.T292A	p.S98T	CTGACCTCCAAGA	.	111	17	109	0	.	228	A	7505118	T	A	7505118	3	1	31	1	0	0	0	0	1	0	0	0	901	1551	54	4	294	4	ARHGEF18	19	7505118	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10		7505118	51623865	96	3618											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9024161	9024161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon18	c.A37111T	p.T12371S	ATGGAGTCCCTGA	.	241	21	254	0	.	566	A	9024161	T	A	9024161	3	1	31	1	0	0	0	0	1	0	0	0	9973	1667	58	4	6680	4	MUC16	19	9024161	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	1519043	9024161	50104822	97	3619											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048323	9048323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon5	c.C33308A	p.T11103N	GAACTAGTGACCA	.	133	22	158	1	.	566	T	9048323	G	T	9048323	3	4	31	1	0	0	0	0	1	0	0	0	9973	1029	36	3	10535	3	MUC16	19	9048323	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	24162	9048323	50080660	98	3620	26	2									
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048324	9048324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon5	c.A33307C	p.T11103P	AACTAGTGACCAG	.	136	21	158	0	.	566	G	9048324	T	G	9048324	3	3	31	1	0	0	0	0	1	0	0	0	9973	1696	59	5	10536	5	MUC16	19	9048324	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10	1	9048324	50080659	99	3621	26	2									
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20002465	20002465	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF253	NM_021047	exon4	c.A409T	p.T137S	TGTTTGACAACTA	.	163	27	236	0	.	90	T	20002465	A	T	20002465	3	4	31	1	0	0	0	0	1	0	0	0	17794	275	10	4	423	4	ZNF253	19	20002465	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	10954141	20002465	39126518	100	3622											
ZNF229	7772	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934680	44934680	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF229	NM_014518	exon6	c.T276C	p.D92D	TTCTTCATCTTGA	.	121	11	161	0	.	94	G	44934680	A	G	44934680	2	3	31	1	0	0	0	0	0	0	0	1	17779	214	8	2		2	ZNF229	19	44934680	Silent	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	24932215	44934680	14194303	101	3623											
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59059680	59059680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM28	NM_005762	exon8	c.G1121A	p.R374Q	TGCACCGGGCCCT	.	129	34	121	0	.	870	A	59059680	G	A	59059680	3	1	31	1	0	0	0	0	1	0	0	0	16499	1116	39	1	1151	1	TRIM28	19	59059680	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	14125000	59059680	69303	102	3624											
TGM3	7053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2321189	2321189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TGM3	NM_003245	exon13	c.G2044T	p.A682S	TTCCCTGCAATCA	.	141	12	122	0	.	139	T	2321189	G	T	2321189	3	4	31	1	0	0	0	0	1	0	0	0	15828	1319	46	3	2094	3	TGM3	20	2321189	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		2321189	60704331	103	3625											
FLRT3	23767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	14307370	14307370	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FLRT3	NM_013281	exon2	c.G783A	p.R261R	GGGCACCCGATTG	.	131	30	154	1	.	91	T	14307370	C	T	14307370	2	4	31	1	0	0	0	0	0	0	0	1	5940	610	22	3		3	FLRT3	20	14307370	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	11986181	14307370	48718150	104	3626											
SPATA2	9825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	48523374	48523374	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPATA2	NM_006038	exon3	c.G345T	p.T115T	AGGGCCCGTGTAG	.	242	22	186	0	.	91	A	48523374	C	A	48523374	2	1	31	1	0	0	0	0	0	0	0	1	15004	639	23	1		1	SPATA2	20	48523374	Silent	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	34216004	48523374	14502146	105	3627											
ITSN1	6453	broad.mit.edu;bcgsc.ca	37	21	35208755	35208755	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITSN1	NM_001001132	exon29	c.G3480A	p.V1160V	CCAGGTGATTGGG	.	51	4	79	0	.	94	A	35208755	G	A	35208755	2	1	31	1	0	0	0	0	0	0	0	1	7926	1277	45	3		3	ITSN1	21	35208755	Silent	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10		35208755	12921140	106	3628											
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19223332	19223332	+	Missense_Mutation	SNP	C	C	G	rs191439705		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CLTCL1	NM_001835	exon6	c.G856C	p.D286H	CTAGGTCGTACAG	.	131	32	164	0	C|0.999;G|0.001	230	G	19223332	C	G	19223332	3	3	31	1	0	0	0	0	1	0	0	0	3567	884	31	4	4174	4	CLTCL1	22	19223332	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10		19223332	32081234	107	3629											
KLHL22	84861	broad.mit.edu;bcgsc.ca	37	22	20843480	20843480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KLHL22	NM_032775	exon2	c.T19C	p.F7L	GGGTGAACTCCTG	.	158	8	163	0	.	278	G	20843480	A	G	20843480	3	3	31	1	0	0	0	0	1	0	0	0	8377	43	2	2	1909	2	KLHL22	22	20843480	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	1620148	20843480	30461086	108	3630											
NF2	4771	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	30069414	30069414	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NF2	NM_000268	exon12	c.G1279T	p.E427X	CTGATGGAGCAGA	.	106	25	96	1	.	4696	T	30069414	G	T	30069414	4	4	31	1	0	0	0	0	0	1	0	0	10357	1175	41	3	1325	3	NF2	22	30069414	Nonsense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	9225934	30069414	21235152	109	3631											
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38696748	38696748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSNK1E	NM_001894	exon5	c.C546G	p.I182M	CGTGTTGATGGAA	.	289	77	353	0	.	1193	C	38696748	G	C	38696748	3	2	31	1	0	0	0	0	1	0	0	0	3953	1280	45	4	728	4	CSNK1E	22	38696748	Missense_Mutation	SNP	G	TCGA-CC-A1HT-01A-11D-A12Z-10	8627334	38696748	12607818	110	3632											
MAP3K15	389840	ucsc.edu;bcgsc.ca	37	X	19418728	19418728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAP3K15	NM_001001671	exon14	c.A1898G	p.E633G	TCCAGCTCCACCG	.	51	5	61	0	.	335	C	19418728	T	C	19418728	3	2	31	1	0	0	0	0	1	0	0	0	9249	1551	54	2	2107	2	MAP3K15	23	19418728	Missense_Mutation	SNP	T	TCGA-CC-A1HT-01A-11D-A12Z-10		19418728	135851832	111	3633											
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140985121	140985121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAGEC3	NM_138702	exon7	c.A1577G	p.E526G	TCTTTGAAGACAC	.	44	22	75	0	.	555	G	140985121	A	G	140985121	3	3	31	1	0	0	0	0	1	0	0	0	9182	246	9	2	1832	2	MAGEC3	23	140985121	Missense_Mutation	SNP	A	TCGA-CC-A1HT-01A-11D-A12Z-10	121566393	140985121	14285439	112	3634											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	151821044	151821044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GABRQ	NM_018558	exon9	c.C1199A	p.P400H	CTCTCCCCATCAC	.	169	66	159	0	.	133	A	151821044	C	A	151821044	3	1	31	1	0	0	0	0	1	0	0	0	6175	623	22	3	1233	3	GABRQ	23	151821044	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	10835923	151821044	3449516	113	3635											
MPP1	4354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154013425	154013425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MPP1	NM_002436	exon7	c.G685A	p.A229T	TACTTGCCACTCG	.	70	30	65	0	.	132	T	154013425	C	T	154013425	3	4	31	1	0	0	0	0	1	0	0	0	9733	739	26	3	739	3	MPP1	23	154013425	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	2192381	154013425	1257135	114	3636											
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	155239667	155239667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IL9R	NM_002186	exon9	c.C1159A	p.L387M	GGGAACCTGAGCT	.	330	38	247	0	.	40	A	155239667	C	A	155239667	3	1	31	1	0	0	0	0	1	0	0	0	7708	680	24	3	1193	3	IL9R	23	155239667	Missense_Mutation	SNP	C	TCGA-CC-A1HT-01A-11D-A12Z-10	1226242	155239667	30893	115	3637											
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3425655	3425655	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MEGF6	NM_001409	exon12	c.G1512A	p.T504T	TGTGAGCGTGTGT	.	138	41	114	0	.	90	T	3425655	C	T	3425655	2	4	32	1	0	0	0	0	0	0	0	1	9462	755	27	1		1	MEGF6	1	3425655	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		3425655	245824966	1	3638											
CAMTA1	23261	ucsc.edu;bcgsc.ca	37	1	6880251	6880251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CAMTA1	NM_015215	exon2	c.A56G	p.Q19R	TTTCCCAAAGTGT	.	47	5	70	0	.	520	G	6880251	A	G	6880251	3	3	32	1	0	0	0	0	1	0	0	0	2613	130	5	2	62	2	CAMTA1	1	6880251	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	3454596	6880251	242370370	2	3639											
HNRNPCL1	343069	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12907411	12907411	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HNRNPCL1	NM_001013631	exon2	c.A732G	p.A244A	GTCTTCTGCACCC	.	198	15	316	1	.	68	C	12907411	T	C	12907411	2	2	32	1	0	0	0	0	0	0	0	1	7263	1567	55	2		2	HNRNPCL1	1	12907411	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	6027160	12907411	236343210	3	3640											
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32158742	32158742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	COL16A1	NM_001856	exon13	c.A1022T	p.E341V	CCCCGCTCACCTT	.	113	18	125	0	.	98	A	32158742	T	A	32158742	3	1	32	1	0	0	0	0	1	0	0	0	3673	1551	54	4	4028	4	COL16A1	1	32158742	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	19251331	32158742	217091879	4	3641											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34498286	34498286	+	Silent	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD2	NM_052896	exon3	c.A306C	p.P102P	GGTGGCTGGCAGC	.	93	12	83	0	.	103	G	34498286	T	G	34498286	2	3	32	1	0	0	0	0	0	0	0	1	3945	1567	55	5		5	CSMD2	1	34498286	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	2339544	34498286	214752335	5	3642											
KCNQ4	9132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41304173	41304173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KCNQ4	NM_004700	exon14	c.C2066T	p.S689L	CCCGCTCGGTCAG	.	313	32	321	2	.	90	T	41304173	C	T	41304173	3	4	32	1	0	0	0	0	1	0	0	0	8085	893	31	1	2120	1	KCNQ4	1	41304173	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	6805887	41304173	207946448	6	3643											
CNN3	1266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	95364951	95364951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNN3	NM_001839	exon6	c.G624A	p.M208I	AGTGCCCATCTGC	.	67	15	128	0	.	90	T	95364951	C	T	95364951	3	4	32	1	0	0	0	0	1	0	0	0	3611	594	21	3	373	3	CNN3	1	95364951	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	54060778	95364951	153885670	7	3644											
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109273448	109273448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FNDC7	NM_001144937	exon9	c.C1777T	p.L593F	CACTGCCTCCTAG	.	98	18	106	0	.	92	T	109273448	C	T	109273448	3	4	32	1	0	0	0	0	1	0	0	0	5973	681	24	3	1811	3	FNDC7	1	109273448	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	13908497	109273448	139977173	8	3645											
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114454510	114454510	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DCLRE1B	NM_022836	exon4	c.A1296G	p.S432S	ATTTTCAGTGCAC	.	102	18	117	0	.	227	G	114454510	A	G	114454510	2	3	32	1	0	0	0	0	0	0	0	1	4295	175	7	2		2	DCLRE1B	1	114454510	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	5181062	114454510	134796111	9	3646											
CHRNB2	1141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154543762	154543762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRNB2	NM_000748	exon5	c.T463C	p.C155R	AGCGCATGCAAGA	.	88	11	101	0	.	90	C	154543762	T	C	154543762	3	2	32	1	0	0	0	0	1	0	0	0	3391	1464	51	2	481	2	CHRNB2	1	154543762	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	40089252	154543762	94706859	10	3647											
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162688873	162688873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DDR2	NM_001014796	exon4	c.T20C	p.M7T	CCAGAATGCTCTT	.	64	15	118	0	.	1464	C	162688873	T	C	162688873	3	2	32	1	0	0	0	0	1	0	0	0	4337	1464	51	2	22	2	DDR2	1	162688873	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	8145111	162688873	86561748	11	3648											
MFSD4	148808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	205568282	205568282	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MFSD4	NM_181644	exon9	c.T1392C	p.Y464Y	CAGCTATAGTTTC	.	317	73	369	0	.	92	C	205568282	T	C	205568282	2	2	32	1	0	0	0	0	0	0	0	1	9533	1413	49	2		2	MFSD4	1	205568282	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	42879409	205568282	43682339	12	3649											
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243291604	243291604	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP170	NM_001042405	exon19	c.4042-2A>T	.	ATCTCCTGCAGGG	.	270	34	420	1	.	93	A	243291604	T	A	243291604	5	1	32	1	0	0	0	0	0	0	1	0	3250	1594	55	4	350	4	CEP170	1	243291604	Splice_Site	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	37723322	243291604	5959017	13	3650											
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243328135	243328135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP170	NM_014812	exon13	c.G3127A	p.D1043N	CTTGATCAGATGA	.	328	26	446	1	.	93	T	243328135	C	T	243328135	3	4	32	1	0	0	0	0	1	0	0	0	3250	826	29	3	1689	3	CEP170	1	243328135	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	36531	243328135	5922486	14	3651											
ZNF496	84838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	247464447	247464447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF496	NM_032752	exon9	c.G1138T	p.E380X	GCTTCTCTGTGGG	.	154	47	190	0	.	91	A	247464447	C	A	247464447	4	1	32	1	0	0	0	0	0	1	0	0	17942	922	32	3	629	3	ZNF496	1	247464447	Nonsense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	4136312	247464447	1786174	15	3652											
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248039390	248039390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM58	NM_015431	exon6	c.G1060A	p.E354K	GTGGGAGAAGGAG	.	193	11	206	0	.	96	A	248039390	G	A	248039390	3	1	32	1	0	0	0	0	1	0	0	0	16528	943	33	3	1082	3	TRIM58	1	248039390	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	574943	248039390	1211231	16	3653											
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109380631	109380631	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RANBP2	NM_006267	exon20	c.A3636G	p.K1212K	ATGGAAAGAACGT	.	35	4	72	0	.	675	G	109380631	A	G	109380631	2	3	32	1	0	0	0	0	0	0	0	1	13028	69	3	2		2	RANBP2	2	109380631	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10		109380631	133818742	17	3654											
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125555776	125555776	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNTNAP5	NM_130773	exon19	c.A3093T	p.T1031T	TTACACAGATTCA	.	199	53	243	0	.	524	T	125555776	A	T	125555776	2	4	32	1	0	0	0	0	0	0	0	1	3650	175	7	4		4	CNTNAP5	2	125555776	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	16175145	125555776	117643597	18	3655											
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128247424	128247424	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	IWS1	NM_017969	exon11	c.C2143T	p.R715X	TTCGTCGTTGAGG	.	267	41	348	0	.	91	A	128247424	G	A	128247424	4	1	32	1	0	0	0	0	0	1	0	0	7931	1153	40	1	332	1	IWS1	2	128247424	Nonsense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	2691648	128247424	114951949	19	3656											
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168099492	168099492	+	Missense_Mutation	SNP	C	C	G	rs112137897		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XIRP2	NM_152381	exon9	c.C1590G	p.N530K	AATGAACTCAGGG	.	43	5	77	0	C|0.500;G|0.500	104	G	168099492	C	G	168099492	3	3	32	1	0	0	0	0	1	0	0	0	17427	564	20	4	1620	4	XIRP2	2	168099492	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	39852068	168099492	75099881	20	3657											
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171259467	171259467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYO3B	NM_001083615	exon19	c.C2239G	p.Q747E	CAAATCCAGTACT	.	102	16	126	0	.	530	G	171259467	C	G	171259467	3	3	32	1	0	0	0	0	1	0	0	0	10077	595	21	4	2313	4	MYO3B	2	171259467	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	3159975	171259467	71939906	21	3658											
MYO1B	4430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192160940	192160940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYO1B	NM_012223	exon3	c.T239G	p.L80R	ATGAACTGAGCCC	.	82	21	101	1	.	238	G	192160940	T	G	192160940	3	3	32	1	0	0	0	0	1	0	0	0	10069	1580	55	5	245	5	MYO1B	2	192160940	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	20901473	192160940	51038433	22	3659											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13383318	13383318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NUP210	NM_024923	exon23	c.A3158T	p.Q1053L	CTGGTCTGGCCGA	.	193	57	217	0	.	256	A	13383318	T	A	13383318	3	1	32	1	0	0	0	0	1	0	0	0	10760	1580	55	4	2577	4	NUP210	3	13383318	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10		13383318	184639112	23	3660											
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645542	38645542	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCN5A	NM_001160160	exon12	c.G1551A	p.R517R	AGAAGTCCTGCTG	.	107	16	101	0	.	98	T	38645542	C	T	38645542	2	4	32	1	0	0	0	0	0	0	0	1	13922	854	30	3		3	SCN5A	3	38645542	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	25262224	38645542	159376888	24	3661											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38991632	38991632	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCN11A	NM_014139	exon1	c.A222T	p.I74I	CTTTCCTATGAGC	.	152	26	170	0	.	99	A	38991632	T	A	38991632	2	1	32	1	0	0	0	0	0	0	0	1	13913	1512	53	4		4	SCN11A	3	38991632	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	346090	38991632	159030798	25	3662											
SLC6A20	54716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45823619	45823619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC6A20	NM_022405	exon2	c.G218A	p.S73N	CCGATGCTGCCCT	.	108	33	151	1	.	92	T	45823619	C	T	45823619	3	4	32	1	0	0	0	0	1	0	0	0	14684	797	28	3	1600	3	SLC6A20	3	45823619	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	6831987	45823619	152198811	26	3663											
DNAH12	201625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57431862	57431862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DNAH12	NM_178504	exon27	c.T4006G	p.F1336V	AAACAAACACAAC	.	182	43	214	1	.	47	C	57431862	A	C	57431862	3	2	32	1	0	0	0	0	1	0	0	0	4600	43	2	5	5404	5	DNAH12	3	57431862	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	11608243	57431862	140590568	27	3664											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121179064	121179064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	POLQ	NM_199420	exon25	c.G6985T	p.A2329S	AGTCAGCAGCCAG	.	155	24	159	0	.	664	A	121179064	C	A	121179064	3	1	32	1	0	0	0	0	1	0	0	0	12208	710	25	3	811	3	POLQ	3	121179064	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	63747202	121179064	76843366	28	3665											
MGLL	11343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	127413989	127413989	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MGLL	NM_007283	exon7	c.G645A	p.L215L	CACCTTCAGCCCT	.	165	36	232	0	.	90	T	127413989	C	T	127413989	2	4	32	1	0	0	0	0	0	0	0	1	9556	813	29	3		3	MGLL	3	127413989	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	6234925	127413989	70608441	29	3666											
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167277892	167277892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WDR49	NM_178824	exon5	c.A611T	p.E204V	CGAGTCTCATTTG	.	152	44	222	0	.	155	A	167277892	T	A	167277892	3	1	32	1	0	0	0	0	1	0	0	0	17299	1551	54	4	1526	4	WDR49	3	167277892	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	39863903	167277892	30744538	30	3667											
KDR	3791	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55946222	55946222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KDR	NM_002253	exon30	c.C3957A	p.Y1319X	ACTGGAGTACACG	.	162	51	206	1	.	2298	T	55946222	G	T	55946222	4	4	32	1	0	0	0	0	0	1	0	0	8139	1024	36	3	117	3	KDR	4	55946222	Nonsense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10		55946222	135208054	31	3668											
HNRNPD	3184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83278019	83278020	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HNRNPD	NM_002138	exon6	c.783_784insG	p.E261fs	ATATTGTTCCTTC	.	132	23	175	0	.	22	C	83278020	-	C	83278019	7	5	32	1	0	1	1	0	0	0	0	0	7264	1722	60	0	296	0	HNRNPD	4	83278019	Frame_Shift_Ins	INS	-	TCGA-CC-A3M9-01A-11D-A20W-10	27331797	83278019	107876257	32	3669											
TET2	54790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	106155167	106155168	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TET2	NM_017628	exon3	c.68_69insT	p.P23fs	CACCTCCCATTTG	.	47	11	89	0	.	4618	T	106155168	-	T	106155167	7	5	32	1	0	1	1	0	0	0	0	0	15767	623	22	0	70	0	TET2	4	106155167	Frame_Shift_Ins	INS	-	TCGA-CC-A3M9-01A-11D-A20W-10	22877148	106155167	84999109	33	3670	27	2									
TET2	54790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	106155168	106155169	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TET2	NM_017628	exon3	c.69_70insCA	p.P23fs	ACCTCCCATTTGC	.	48	11	92	0	.	4618	CA	106155169	-	CA	106155168	7	5	32	1	0	1	1	0	0	0	0	0	15767	581	21	0	71	0	TET2	4	106155168	Frame_Shift_Ins	INS	-	TCGA-CC-A3M9-01A-11D-A20W-10	1	106155168	84999108	34	3671	27	2									
MMAA	166785	broad.mit.edu;bcgsc.ca	37	4	146575235	146575235	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MMAA	NM_172250	exon6	c.A909G	p.Q303Q	GATACAAGCGGAA	.	110	6	121	0	.	91	G	146575235	A	G	146575235	2	3	32	1	0	0	0	0	0	0	0	1	9639	69	3	2		2	MMAA	4	146575235	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	40420067	146575235	44579041	35	3672											
KIAA0922	23240	broad.mit.edu;bcgsc.ca	37	4	154557488	154557488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA0922	NM_001131007	exon35	c.G4593A	p.M1531I	TCCAATGTCTGGA	.	105	6	123	0	.	92	A	154557488	G	A	154557488	3	1	32	1	0	0	0	0	1	0	0	0	8201	1377	48	3	4731	3	KIAA0922	4	154557488	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	7982253	154557488	36596788	36	3673											
PDCD6	10016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	306821	306821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDCD6	NM_013232	exon4	c.G313C	p.D105H	GACCGGGACAACT	.	220	30	184	0	.	290	C	306821	G	C	306821	3	2	32	1	0	0	0	0	1	0	0	0	11623	1174	41	4	327	4	PDCD6	5	306821	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10		306821	180608439	37	3674											
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	464493	464493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EXOC3	NM_007277	exon10	c.A1742G	p.N581S	ATTTCAACGATTT	.	74	7	85	0	.	90	G	464493	A	G	464493	3	3	32	1	0	0	0	0	1	0	0	0	5303	43	2	2	1776	2	EXOC3	5	464493	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	157672	464493	180450767	38	3675											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71491475	71491475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAP1B	NM_005909	exon5	c.T2293C	p.S765P	GAAGAGTCTGTCA	.	82	12	116	0	.	155	C	71491475	T	C	71491475	3	2	32	1	0	0	0	0	1	0	0	0	9228	1667	58	2	2311	2	MAP1B	5	71491475	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	71026982	71491475	109423785	39	3676											
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111600669	111600669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EPB41L4A	NM_022140	exon6	c.G478T	p.V160L	CAGATACATATCC	.	85	13	75	0	.	91	A	111600669	C	A	111600669	3	1	32	1	0	0	0	0	1	0	0	0	5155	478	17	3	1654	3	EPB41L4A	5	111600669	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	40109194	111600669	69314591	40	3677											
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112899131	112899131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	YTHDC2	NM_022828	exon19	c.T2384C	p.M795T	TTCTTATGAAAGC	.	124	17	104	0	.	92	C	112899131	T	C	112899131	3	2	32	1	0	0	0	0	1	0	0	0	17494	1464	51	2	2458	2	YTHDC2	5	112899131	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	1298462	112899131	68016129	41	3678											
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125821443	125821443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GRAMD3	NM_001146319	exon11	c.A1081G	p.I361V	CACCATATTCTTA	.	39	6	52	0	.	90	G	125821443	A	G	125821443	3	3	32	1	0	0	0	0	1	0	0	0	6751	449	16	2	1292	2	GRAMD3	5	125821443	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	12922312	125821443	55093817	42	3679											
HSPA4	3308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132400692	132400692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSPA4	NM_002154	exon2	c.C128T	p.P43L	TTGGTCCTAAGAA	.	209	32	183	0	.	226	T	132400692	C	T	132400692	3	4	32	1	0	0	0	0	1	0	0	0	7412	681	24	3	134	3	HSPA4	5	132400692	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	6579249	132400692	48514568	43	3680											
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140798233	140798233	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDHGB7	NM_018927	exon1	c.G807A	p.Q269Q	TGACCAGGACGAG	.	41	5	37	0	.	29	A	140798233	G	A	140798233	2	1	32	1	0	0	0	0	0	0	0	1	11568	991	35	3		3	PCDHGB7	5	140798233	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	8397541	140798233	40117027	44	3681											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	142435642	142435642	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARHGAP26	NM_015071	exon16	c.A1423T	p.K475X	TTCATCAAAGCAG	.	51	8	59	0	.	660	T	142435642	A	T	142435642	4	4	32	1	0	0	0	0	0	1	0	0	875	131	5	4	1485	4	ARHGAP26	5	142435642	Nonsense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	1637409	142435642	38479618	45	3682											
MAPK9	5601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179674507	179674507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAPK9	NM_002752	exon7	c.A620C	p.D207A	CAGATATCAACTG	.	48	5	64	0	.	1402	G	179674507	T	G	179674507	3	3	32	1	0	0	0	0	1	0	0	0	9287	1435	50	5	724	5	MAPK9	5	179674507	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	37238865	179674507	1240753	46	3683											
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	34029743	34029743	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GRM4	NM_001256811	exon4	c.A799T	p.K267X	TGATCTTGTCGAA	.	170	55	214	0	.	525	A	34029743	T	A	34029743	4	1	32	1	0	0	0	0	0	1	0	0	6799	1821	63	4	1971	4	GRM4	6	34029743	Nonsense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10		34029743	137085324	47	3684											
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	84233541	84233541	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRSS35	NM_153362	exon2	c.C381A	p.T127T	TGGCACCGACAGC	.	157	10	210	0	.	91	A	84233541	C	A	84233541	2	1	32	1	0	0	0	0	0	0	0	1	12624	639	23	1		1	PRSS35	6	84233541	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	50203798	84233541	86881526	48	3685											
VTA1	51534	broad.mit.edu;bcgsc.ca	37	6	142487370	142487370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	VTA1	NM_016485	exon2	c.T118C	p.L40L	GGTCGTTTATACG	.	126	7	154	0	.	90	C	142487370	T	C	142487370	2	2	32	1	0	0	0	0	0	0	0	1	17230	1838	64	2		2	VTA1	6	142487370	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	58253829	142487370	28627697	49	3686											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1529320	1529320	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001080453	exon18	c.2166-2A>T	.	GGTACCTGGAAGG	.	65	9	79	0	.	.	A	1529320	T	A	1529320	5	1	32	1	0	0	0	0	0	0	1	0	7775	1594	55	4	4536	4	INTS1	7	1529320	Splice_Site	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10		1529320	157609343	50	3687											
ADCYAP1R1	117	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31104532	31104532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ADCYAP1R1	NM_001118	exon3	c.G137T	p.G46V	TGATGGGCTTCAA	.	49	5	99	0	.	91	T	31104532	G	T	31104532	3	4	32	1	0	0	0	0	1	0	0	0	303	1203	42	3	143	3	ADCYAP1R1	7	31104532	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	29575212	31104532	128034131	51	3688											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94057038	94057038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	COL1A2	NM_000089	exon49	c.C3367A	p.R1123S	CAGCCTCGCTCAG	.	87	26	123	0	.	521	A	94057038	C	A	94057038	3	1	32	1	0	0	0	0	1	0	0	0	3678	884	31	1	3561	1	COL1A2	7	94057038	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	62952506	94057038	65081625	52	3689											
LMTK2	22853	broad.mit.edu;bcgsc.ca	37	7	97822981	97822981	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LMTK2	NM_014916	exon11	c.T3204C	p.P1068P	TCTGCCTCCCAAC	.	61	5	62	0	.	1381	C	97822981	T	C	97822981	2	2	32	1	0	0	0	0	0	0	0	1	8859	1538	54	2		2	LMTK2	7	97822981	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	3765943	97822981	61315682	53	3690											
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99490170	99490171	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM4	NM_033017	exon7	c.1119_1120insA	p.N373fs	GAAAACGTTTTTT	.	137	16	139	0	.	227	T	99490171	-	T	99490170	7	5	32	1	0	1	1	0	0	0	0	0	16511	1136	40	0	387	0	TRIM4	7	99490170	Frame_Shift_Ins	INS	-	TCGA-CC-A3M9-01A-11D-A20W-10	1667189	99490170	59648493	54	3691											
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	102113247	102113247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LRWD1	NM_152892	exon14	c.C1799T	p.T600I	CCCCCACACAGGT	.	141	6	110	0	.	69	T	102113247	C	T	102113247	3	4	32	1	0	0	0	0	1	0	0	0	9047	478	17	3	1853	3	LRWD1	7	102113247	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	2623077	102113247	57025416	55	3692											
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	117243675	117243675	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CFTR	NM_000492	exon17	c.T2747A	p.F916Y	ATGTGTTTTACAT	.	118	11	243	0	.	518	A	117243675	T	A	117243675	3	1	32	1	0	0	0	0	1	0	0	0	3294	1841	64	4	2813	4	CFTR	7	117243675	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	15130428	117243675	41894988	56	3693											
CTTNBP2	83992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117432446	117432446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CTTNBP2	NM_033427	exon4	c.A804C	p.Q268H	TTTCAGTTGCTCA	.	267	41	276	1	.	94	G	117432446	T	G	117432446	3	3	32	1	0	0	0	0	1	0	0	0	4045	1722	60	5	4267	5	CTTNBP2	7	117432446	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	188771	117432446	41706217	57	3694											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117432538	117432538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CTTNBP2	NM_033427	exon4	c.C712T	p.R238W	GTTCCCGCTCAGT	.	232	28	232	0	.	94	A	117432538	G	A	117432538	3	1	32	1	0	0	0	0	1	0	0	0	4045	1086	38	1	4359	1	CTTNBP2	7	117432538	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	92	117432538	41706125	58	3695											
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135377154	135377154	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC13A4	NM_012450	exon11	c.T1137C	p.T379T	AAATCCAGTCACC	.	81	17	86	0	.	90	G	135377154	A	G	135377154	2	3	32	1	0	0	0	0	0	0	0	1	14394	175	7	2		2	SLC13A4	7	135377154	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	17944616	135377154	23761509	59	3696											
TRIM24	8805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	138239638	138239638	+	Missense_Mutation	SNP	G	G	A	rs201288398	alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM24	NM_015905	exon9	c.G1457A	p.R486Q	TGCAACGGAGGCC	.	129	11	244	0	G|0.999;T|0.001	1030	A	138239638	G	A	138239638	3	1	32	1	0	0	0	0	1	0	0	0	16495	1116	39	1	1491	1	TRIM24	7	138239638	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	2862484	138239638	20899025	60	3697											
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	139791731	139791731	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	JHDM1D	NM_030647	exon19	c.G2604A	p.A868A	CTGGCACGCCCCC	.	181	9	201	0	.	91	T	139791731	C	T	139791731	2	4	32	1	0	0	0	0	0	0	0	1	7948	523	19	1		1	JHDM1D	7	139791731	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	1552093	139791731	19346932	61	3698											
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150708074	150708074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NOS3	NM_000603	exon23	c.G2984C	p.G995A	TCCGGGGGTAAGT	.	48	10	78	0	.	1011	C	150708074	G	C	150708074	3	2	32	1	0	0	0	0	1	0	0	0	10544	1246	43	4	3352	4	NOS3	7	150708074	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	10916343	150708074	8430589	62	3699											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151970873	151970873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MLL3	NM_170606	exon7	c.G929T	p.C310F	GCAGCACAAGGAT	.	394	18	472	0	.	1398	A	151970873	C	A	151970873	3	1	32	1	0	0	0	0	1	0	0	0	9622	478	17	3	14018	3	MLL3	7	151970873	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	1262799	151970873	7167790	63	3700											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2799992	2799992	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD1	NM_033225	exon70	c.10535+2T>G	.	TGCAGTACCTGTG	.	41	23	51	0	.	86	C	2799992	A	C	2799992	5	2	32	1	0	0	0	0	0	0	1	0	3944	405	14	5	165	5	CSMD1	8	2799992	Splice_Site	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10		2799992	143564030	64	3701											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3443701	3443701	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD1	NM_033225	exon9	c.A1179G	p.T393T	CGTCTCTGTAACT	.	75	21	79	0	.	86	C	3443701	T	C	3443701	2	2	32	1	0	0	0	0	0	0	0	1	3944	1567	55	2		2	CSMD1	8	3443701	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	643709	3443701	142920321	65	3702											
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42587427	42587427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRNB3	NM_000749	exon5	c.C977T	p.S326F	CTTCTTCCACGTA	.	438	176	300	0	.	91	T	42587427	C	T	42587427	3	4	32	1	0	0	0	0	1	0	0	0	3392	855	30	3	995	3	CHRNB3	8	42587427	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	39143726	42587427	103776595	66	3703											
ARFGEF1	10565	broad.mit.edu;bcgsc.ca	37	8	68184028	68184028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARFGEF1	NM_006421	exon10	c.T1481C	p.V494A	GATGAGACTCCAT	.	142	6	111	0	.	294	G	68184028	A	G	68184028	3	3	32	1	0	0	0	0	1	0	0	0	852	275	10	2	4188	2	ARFGEF1	8	68184028	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	25596601	68184028	78179994	67	3704											
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75932132	75932132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CRISPLD1	NM_031461	exon11	c.A1155G	p.T385T	CTTCACAGTCTCT	.	165	56	211	0	.	91	G	75932132	A	G	75932132	2	3	32	1	0	0	0	0	0	0	0	1	3882	175	7	2		2	CRISPLD1	8	75932132	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	7748104	75932132	70431890	68	3705											
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	82357106	82357106	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PMP2	NM_002677	exon2	c.C192G	p.S64S	CTTGAAGGAGATT	.	104	13	117	0	.	90	C	82357106	G	C	82357106	2	2	32	1	0	0	0	0	0	0	0	1	12138	987	35	4		4	PMP2	8	82357106	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	6424974	82357106	64006916	69	3706											
ATP6V0D2	245972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87165053	87165053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP6V0D2	NM_152565	exon8	c.G900T	p.M300I	ACAAATGAATGTG	.	64	21	84	0	.	90	T	87165053	G	T	87165053	3	4	32	1	0	0	0	0	1	0	0	0	1174	1290	45	3	930	3	ATP6V0D2	8	87165053	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	4807947	87165053	59198969	70	3707											
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87755800	87755800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNGB3	NM_019098	exon1	c.A56T	p.E19V	TCATTCTCATTGT	.	285	120	397	0	.	93	A	87755800	T	A	87755800	3	1	32	1	0	0	0	0	1	0	0	0	3601	1551	54	4	2445	4	CNGB3	8	87755800	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	590747	87755800	58608222	71	3708											
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121644855	121644855	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SNTB1	NM_021021	exon3	c.G825A	p.T275T	GATCACCGTGTGC	.	96	5	131	0	.	228	T	121644855	C	T	121644855	2	4	32	1	0	0	0	0	0	0	0	1	14872	639	23	1		1	SNTB1	8	121644855	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	33889055	121644855	24719167	72	3709											
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124266621	124266621	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZHX1	NM_007222	exon3	c.A1566G	p.S522S	ACTCTTTGAATTT	.	54	20	100	0	.	91	C	124266621	T	C	124266621	2	2	32	1	0	0	0	0	0	0	0	1	17672	1799	63	2		2	ZHX1	8	124266621	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	2621766	124266621	22097401	73	3710											
PDCD1LG2	80380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5549465	5549465	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDCD1LG2	NM_025239	exon4	c.C492A	p.T164T	CAACACCAGCCAC	.	74	22	164	1	.	227	A	5549465	C	A	5549465	2	1	32	1	0	0	0	0	0	0	0	1	11618	581	21	3		3	PDCD1LG2	9	5549465	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		5549465	135663966	74	3711											
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33796749	33796749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRSS3	NM_007343	exon2	c.G320A	p.G107D	GCGGTGGCTCCCT	.	174	21	229	0	.	90	A	33796749	G	A	33796749	3	1	32	1	0	0	0	0	1	0	0	0	12622	1203	42	3	370	3	PRSS3	9	33796749	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	28247284	33796749	107416682	75	3712											
PTAR1	375743	ucsc.edu;bcgsc.ca	37	9	72347125	72347125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PTAR1	NM_001099666	exon5	c.A572G	p.Y191C	CTTGGGTATCTCC	.	45	4	101	0	.	69	C	72347125	T	C	72347125	3	2	32	1	0	0	0	0	1	0	0	0	12724	1638	57	2	652	2	PTAR1	9	72347125	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	38550376	72347125	68866306	76	3713											
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	124535287	124535287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DAB2IP	NM_032552	exon12	c.C2396G	p.S799C	CGCTCTCCTTCCA	.	98	28	148	0	.	91	G	124535287	C	G	124535287	3	3	32	1	0	0	0	0	1	0	0	0	4219	855	30	4	2442	4	DAB2IP	9	124535287	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	52188162	124535287	16678144	77	3714											
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25861801	25861801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPR158	NM_020752	exon7	c.T1738A	p.Y580N	TGGGACTACATGA	.	102	17	201	0	.	141	A	25861801	T	A	25861801	3	1	32	1	0	0	0	0	1	0	0	0	6663	1522	53	4	1764	4	GPR158	10	25861801	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10		25861801	109672946	78	3715											
PARD3	56288	broad.mit.edu;bcgsc.ca	37	10	34690758	34690758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PARD3	NM_001184788	exon6	c.C802G	p.L268V	ACTCCAGAGAAAA	.	50	5	78	0	.	92	C	34690758	G	C	34690758	3	2	32	1	0	0	0	0	1	0	0	0	11443	933	33	4	3383	4	PARD3	10	34690758	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	8828957	34690758	100843989	79	3716											
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413759	48413759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GDF2	NM_016204	exon2	c.C1109T	p.P370L	TTCGTCGGCGTCA	.	141	18	162	0	.	229	A	48413759	G	A	48413759	3	1	32	1	0	0	0	0	1	0	0	0	6314	1116	39	1	184	1	GDF2	10	48413759	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	13723001	48413759	87120988	80	3717											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568668	55568668	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH15	.	.	.	.	ATCTTGAGCTTCA	.	212	51	261	0	.	193	T	55568668	A	T	55568668	2	4	32	1	0	0	0	0	0	0	0	1	11511	291	11	4		4	PCDH15	10	55568668	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	7154909	55568668	79966079	81	3718											
KIF11	3832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94369152	94369152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF11	NM_004523	exon6	c.T584C	p.I195T	GAGTGATAATTAA	.	60	9	91	0	.	227	C	94369152	T	C	94369152	3	2	32	1	0	0	0	0	1	0	0	0	8272	1406	49	2	606	2	KIF11	10	94369152	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	38800484	94369152	41165595	82	3719											
SORCS1	114815	broad.mit.edu;bcgsc.ca	37	10	108389095	108389095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SORCS1	NM_001206572	exon19	c.G2527A	p.V843M	AAGACACCGCGAT	.	89	7	113	1	.	153	T	108389095	C	T	108389095	3	4	32	1	0	0	0	0	1	0	0	0	14930	507	18	3	1245	3	SORCS1	10	108389095	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	14019943	108389095	27145652	83	3720											
TDRD1	56165	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115986999	115986999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TDRD1	NM_198795	exon23	c.T3344G	p.L1115R	ATAAGCTAGTGAC	.	192	66	237	1	.	90	G	115986999	T	G	115986999	3	3	32	1	0	0	0	0	1	0	0	0	15727	1522	53	5	3430	5	TDRD1	10	115986999	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	7597904	115986999	19547748	84	3721											
HSPA12A	259217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118458224	118458224	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSPA12A	NM_025015	exon5	c.G468T	p.T156T	TGCTGCCGTCAGG	.	89	28	124	0	.	206	A	118458224	C	A	118458224	2	1	32	1	0	0	0	0	0	0	0	1	7404	639	23	1		1	HSPA12A	10	118458224	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	2471225	118458224	17076523	85	3722											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124377713	124377713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DMBT1	NM_007329	exon38	c.C4685A	p.A1562D	GAAATGCCCAGTT	.	66	20	100	0	.	494	A	124377713	C	A	124377713	3	1	32	1	0	0	0	0	1	0	0	0	4577	739	26	3	4835	3	DMBT1	10	124377713	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	5919489	124377713	11157034	86	3723											
SYT8	90019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1858034	1858034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SYT8	NM_138567	exon7	c.T775A	p.S259T	CCCAGCTCAGGCC	.	94	11	107	0	.	91	A	1858034	T	A	1858034	3	1	32	1	0	0	0	0	1	0	0	0	15477	1551	54	4	801	4	SYT8	11	1858034	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10		1858034	133148482	87	3724											
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1955638	1955638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TNNT3	NM_006757	exon12	c.C443T	p.S148F	CTCTGTCTTCCAT	.	92	14	82	0	.	91	T	1955638	C	T	1955638	3	4	32	1	0	0	0	0	1	0	0	0	16329	913	32	3	526	3	TNNT3	11	1955638	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	97604	1955638	133050878	88	3725											
STK33	65975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8496345	8496345	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	STK33	NM_030906	exon3	c.A108G	p.P36P	CAAAACTGGAGGA	.	92	21	140	0	.	337	C	8496345	T	C	8496345	2	2	32	1	0	0	0	0	0	0	0	1	15299	1567	55	2		2	STK33	11	8496345	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	6540707	8496345	126510171	89	3726											
MRGPRX1	259249	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18955787	18955787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MRGPRX1	NM_147199	exon1	c.C545T	p.A182V	AGCCACGCGACTG	.	79	11	92	1	.	92	A	18955787	G	A	18955787	3	1	32	1	0	0	0	0	1	0	0	0	9766	1087	38	1	427	1	MRGPRX1	11	18955787	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	10459442	18955787	116050729	90	3727											
BDNF	627	ucsc.edu;mdanderson.org	37	11	27681097	27681097	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BDNF	.	.	.	.	AACCCTTCACTCC	.	259	78	237	0	.	514	C	27681097	T	C	27681097	1	2	32	0	1	0	0	0	0	0	0	0	1394	1798	62	2		2	BDNF	11	27681097	RNA	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	8725310	27681097	107325419	91	3728											
OR5D18	219438	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587762	55587762	+	Silent	SNP	T	T	C	rs116682108	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OR5D18	NM_001001952	exon1	c.T657C	p.Y219Y	ATCTTATGCGTTC	.	166	24	219	0	T|0.997;C|0.003	71	C	55587762	T	C	55587762	2	2	32	1	0	0	0	0	0	0	0	1	11157	1471	51	2		2	OR5D18	11	55587762	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	27906665	55587762	79418754	92	3729											
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66384504	66384504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RBM14	NM_001198837	exon1	c.G313T	p.V105F	GGACGCGTCATCG	.	76	9	73	0	.	92	T	66384504	G	T	66384504	3	4	32	1	0	0	0	0	1	0	0	0	13115	1145	40	1	315	1	RBM14	11	66384504	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	10796742	66384504	68622012	93	3730											
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94040391	94040391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOLR4	NM_001199206	exon3	c.G409A	p.E137K	GACTGTGAGGAGT	.	112	12	162	0	.	23	A	94040391	G	A	94040391	3	1	32	1	0	0	0	0	1	0	0	0	5984	1291	45	3	398	3	FOLR4	11	94040391	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	27655887	94040391	40966125	94	3731											
C11orf87	399947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	109294862	109294862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C11orf87	NM_207645	exon2	c.C503A	p.P168Q	CTCCACCGCCAGC	.	64	19	71	0	.	92	A	109294862	C	A	109294862	3	1	32	1	0	0	0	0	1	0	0	0	1669	652	23	1	505	1	C11orf87	11	109294862	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	15254471	109294862	25711654	95	3732											
WBP11	51729	broad.mit.edu;bcgsc.ca	37	12	14953690	14953690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WBP11	NM_016312	exon3	c.A92G	p.K31R	ACCTTCTTTAATT	.	75	6	141	0	.	92	C	14953690	T	C	14953690	3	2	32	1	0	0	0	0	1	0	0	0	17255	1609	56	2	1873	2	WBP11	12	14953690	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10		14953690	118898205	96	3733											
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	113901064	113901064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LHX5	NM_022363	exon5	c.C1140A	p.S380R	GGTGCCGCTCATT	.	34	14	20	0	.	90	T	113901064	G	T	113901064	3	4	32	1	0	0	0	0	1	0	0	0	8774	1078	38	1	72	1	LHX5	12	113901064	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	98947374	113901064	19950831	97	3734											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121432040	121432040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	HNF1A,NS,other,0	HNF1A	NM_000545	exon4	c.C787G	p.R263G	GAGGTGCGTGTCT	.	61	5	111	0	.	1745	G	121432040	C	G	121432040	3	3	32	1	0	0	0	0	1	0	0	0	7251	768	27	4	801	4	HNF1A	12	121432040	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	7530976	121432040	12419855	98	3735											
GOLGA3	2802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133384623	133384623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GOLGA3	NM_001172557	exon5	c.G1032T	p.M344I	GTTGACCATATAG	.	103	30	124	0	.	95	A	133384623	C	A	133384623	3	1	32	1	0	0	0	0	1	0	0	0	6554	594	21	3	3682	3	GOLGA3	12	133384623	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	11952583	133384623	467272	99	3736											
MIPEP	4285	broad.mit.edu;bcgsc.ca	37	13	24384001	24384001	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MIPEP	NM_005932	exon15	c.T1716C	p.D572D	TTGCATATCAGCT	.	66	6	57	0	.	90	G	24384001	A	G	24384001	2	3	32	1	0	0	0	0	0	0	0	1	9592	446	16	2		2	MIPEP	13	24384001	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10		24384001	90785877	100	3737											
DIAPH3	81624	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	60413570	60413570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DIAPH3	NM_001042517	exon23	c.C2750T	p.T917M	TCCAGCGTTTCTA	.	15	3	63	0	.	516	A	60413570	G	A	60413570	3	1	32	1	0	0	0	0	1	0	0	0	4520	1145	40	1	875	1	DIAPH3	13	60413570	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	36029569	60413570	54756308	101	3738											
UCHL3	7347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	76140947	76140947	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UCHL3	NM_006002	exon4	c.G300A	p.L100L	TGGACTGATTCAT	.	54	8	102	0	.	522	A	76140947	G	A	76140947	2	1	32	1	0	0	0	0	0	0	0	1	16918	1277	45	3		3	UCHL3	13	76140947	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	15727377	76140947	39028931	102	3739											
C14orf166B	145497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77311222	77311222	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_194287	exon7	c.G705A	p.G235G	AGGAGGGGAGCAC	.	51	17	67	0	.	.	A	77311222	G	A	77311222	2	1	32	1	0	0	0	0	0	0	0	1	1757	1219	43	3		3	C14orf166B	14	77311222	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10		77311222	30038318	103	3740											
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79269978	79269978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NRXN3	NM_004796	exon6	c.G941A	p.S314N	TCCTGAGCTATGA	.	107	27	130	0	.	587	A	79269978	G	A	79269978	3	1	32	1	0	0	0	0	1	0	0	0	10667	971	34	3	955	3	NRXN3	14	79269978	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	1958756	79269978	28079562	104	3741											
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	104642658	104642658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF26A	NM_015656	exon12	c.G3533T	p.G1178V	GCCCTGGGGAAGT	.	107	34	83	0	.	24	T	104642658	G	T	104642658	3	4	32	1	0	0	0	0	1	0	0	0	8294	1232	43	3	3579	3	KIF26A	14	104642658	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	25372680	104642658	2706882	105	3742											
BRF1	2972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105693005	105693005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BRF1	NM_001519	exon8	c.A881G	p.Y294C	GCTGTGTACGAGG	.	102	29	88	1	.	155	C	105693005	T	C	105693005	3	2	32	1	0	0	0	0	1	0	0	0	1510	1638	57	2	1196	2	BRF1	14	105693005	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	1050347	105693005	1656535	106	3743											
UBE3A	7337	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25616256	25616256	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UBE3A	NM_000462	exon7	c.T1074C	p.S358S	ATTTCGACTGTTA	.	125	19	132	1	.	660	G	25616256	A	G	25616256	2	3	32	1	0	0	0	0	0	0	0	1	16876	272	10	2		2	UBE3A	15	25616256	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10		25616256	76915136	107	3744											
DUOX2	50506	broad.mit.edu;bcgsc.ca	37	15	45393403	45393403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DUOX2	NM_014080	exon22	c.G2921A	p.R974H	GCTCACCGCTCCC	.	105	7	133	1	.	95	T	45393403	C	T	45393403	3	4	32	1	0	0	0	0	1	0	0	0	4801	666	23	1	1777	1	DUOX2	15	45393403	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	19777147	45393403	57137989	108	3745											
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48500027	48500027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC12A1	NM_001184832	exon2	c.T111A	p.D37E	TGCAGATGACAAT	.	83	25	120	0	.	24	A	48500027	T	A	48500027	3	1	32	1	0	0	0	0	1	0	0	0	14382	1461	51	4	113	4	SLC12A1	15	48500027	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	3106624	48500027	54031365	109	3746											
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49135766	49135766	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SHC4	NM_203349	exon10	c.G1323A	p.G441G	CTGCACCCCTCTT	.	186	57	183	0	.	95	T	49135766	C	T	49135766	2	4	32	1	0	0	0	0	0	0	0	1	14273	610	22	3		3	SHC4	15	49135766	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	635739	49135766	53395626	110	3747											
UNC13C	440279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54306041	54306041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UNC13C	NM_001080534	exon1	c.A941G	p.H314R	TAGGTCATATGGG	.	51	7	83	0	.	51	G	54306041	A	G	54306041	3	3	32	1	0	0	0	0	1	0	0	0	16983	217	8	2	943	2	UNC13C	15	54306041	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	5170275	54306041	48225351	111	3748											
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76165791	76165791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UBE2Q2	NM_173469	exon5	c.A470G	p.Y157C	ATCACTATGAGAT	.	130	20	183	0	.	70	G	76165791	A	G	76165791	3	3	32	1	0	0	0	0	1	0	0	0	16867	449	16	2	624	2	UBE2Q2	15	76165791	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	21859750	76165791	26365601	112	3749											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89417182	89417182	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ACAN	NM_013227	exon17	c.C7443A	p.V2481V	GTTTGTCCAGCGC	.	95	9	107	0	.	25	A	89417182	C	A	89417182	2	1	32	1	0	0	0	0	0	0	0	1	117	842	30	3		3	ACAN	15	89417182	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	13251391	89417182	13114210	113	3750											
KIF22	3835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29811026	29811026	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF22	NM_007317	exon7	c.C1068T	p.V356V	CACAGTCTCCGCA	.	124	22	225	0	.	68	T	29811026	C	T	29811026	2	4	32	1	0	0	0	0	0	0	0	1	8290	900	32	3		3	KIF22	16	29811026	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		29811026	60543727	114	3751											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65038624	65038624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDH11	NM_001797	exon3	c.G149A	p.R50H	TTGGAGCGCTGTA	.	95	19	109	0	.	852	T	65038624	C	T	65038624	3	4	32	1	0	0	0	0	1	0	0	0	3097	768	27	1	2285	1	CDH11	16	65038624	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	35227598	65038624	25316129	115	3752											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65038770	65038770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDH11	NM_001797	exon3	c.G3T	p.M1I	CTCCTTCATTTTT	.	133	31	178	0	.	852	A	65038770	C	A	65038770	3	1	32	1	0	0	0	0	1	0	0	0	3097	826	29	3	2431	3	CDH11	16	65038770	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	146	65038770	25315983	116	3753											
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69959360	69959360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WWP2	NM_001270454	exon11	c.C1207T	p.P403S	CATGATCCCCTGG	.	157	40	129	0	.	658	T	69959360	C	T	69959360	3	4	32	1	0	0	0	0	1	0	0	0	17413	855	30	3	1249	3	WWP2	16	69959360	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	4920590	69959360	20395393	117	3754											
GLG1	2734	ucsc.edu;bcgsc.ca	37	16	74496078	74496078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GLG1	NM_001145667	exon22	c.T2950C	p.C984R	CTTCACAGTCTGA	.	40	4	55	0	.	136	G	74496078	A	G	74496078	3	3	32	1	0	0	0	0	1	0	0	0	6436	188	7	2	689	2	GLG1	16	74496078	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	4536718	74496078	15858675	118	3755											
FOXL1	2300	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612389	86612389	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOXL1	NM_005250	exon1	c.G60C	p.L20L	GTATCTGTACGGT	.	96	11	115	0	.	227	C	86612389	G	C	86612389	2	2	32	1	0	0	0	0	0	0	0	1	6016	1364	48	4		4	FOXL1	16	86612389	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	12116311	86612389	3742364	119	3756											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	203	103	211	0	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	32	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		7577534	73617676	120	3757											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10432947	10432947	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYH2	NM_017534	exon24	c.G3051A	p.Q1017Q	CTCTGCCTGCAGG	.	362	166	335	0	.	194	T	10432947	C	T	10432947	2	4	32	1	0	0	0	0	0	0	0	1	10035	680	24	3		3	MYH2	17	10432947	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	2855413	10432947	70762263	121	3758											
GPATCH8	23131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42475028	42475028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPATCH8	NM_001002909	exon8	c.G4417T	p.A1473S	CTGCTGCAGCAGG	.	152	30	225	1	.	94	A	42475028	C	A	42475028	3	1	32	1	0	0	0	0	1	0	0	0	6594	710	25	3	95	3	GPATCH8	17	42475028	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	32042081	42475028	38720182	122	3759											
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45885990	45885990	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OSBPL7	NM_145798	exon22	c.C2334T	p.A778A	CTTCTGGGCCTCA	.	237	33	305	0	.	68	A	45885990	G	A	45885990	2	1	32	1	0	0	0	0	0	0	0	1	11282	1219	43	3		3	OSBPL7	17	45885990	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	3410962	45885990	35309220	123	3760											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66267772	66267772	+	Missense_Mutation	SNP	T	T	C	rs139961659		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC16A6	NM_001174166	exon6	c.A529G	p.I177V	AGCCAATGCGCTC	.	95	19	93	0	T|1.000;C|0.000	90	C	66267772	T	C	66267772	3	2	32	1	0	0	0	0	1	0	0	0	14412	1464	51	2	1050	2	SLC16A6	17	66267772	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	20381782	66267772	14927438	124	3761											
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76113656	76113656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TMC6	NM_001127198	exon17	c.G2091T	p.W697C	GCGCACCCACACC	.	67	20	86	0	.	90	A	76113656	C	A	76113656	3	1	32	1	0	0	0	0	1	0	0	0	15986	624	22	3	342	3	TMC6	17	76113656	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	9845884	76113656	5081554	125	3762											
CYTH1	9267	broad.mit.edu;bcgsc.ca	37	17	76698670	76698670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CYTH1	NM_017456	exon4	c.A187G	p.N63D	GTTTGTTCCTCTG	.	146	6	136	0	.	228	C	76698670	T	C	76698670	3	2	32	1	0	0	0	0	1	0	0	0	4203	1783	62	2	1049	2	CYTH1	17	76698670	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	585014	76698670	4496540	126	3763											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2610833	2610833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NDC80	NM_006101	exon16	c.G1764A	p.M588I	AGAGATGGTTGCT	.	174	22	213	0	.	91	A	2610833	G	A	2610833	3	1	32	1	0	0	0	0	1	0	0	0	10242	1348	47	3	1822	3	NDC80	18	2610833	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10		2610833	75466415	127	3764											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	7023225	7023225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LAMA1	NM_005559	exon19	c.C2639A	p.A880D	CAGTGGGCGCCAT	.	119	10	122	0	.	149	T	7023225	G	T	7023225	3	4	32	1	0	0	0	0	1	0	0	0	8605	1203	42	3	6768	3	LAMA1	18	7023225	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	4412392	7023225	71054023	128	3765											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13049219	13049219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP192	NM_032142	exon16	c.A2429T	p.D810V	CTTGGGATTTATC	.	80	11	72	0	.	27	T	13049219	A	T	13049219	3	4	32	1	0	0	0	0	1	0	0	0	3251	333	12	4	2487	4	CEP192	18	13049219	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	6025994	13049219	65028029	129	3766											
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19263896	19263896	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ABHD3	NM_138340	exon4	c.G540A	p.A180A	CTCCCCCGCCACT	.	193	46	189	0	.	90	T	19263896	C	T	19263896	2	4	32	1	0	0	0	0	0	0	0	1	83	639	23	1		1	ABHD3	18	19263896	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	6214677	19263896	58813352	130	3767											
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34646878	34646878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA1328	NM_020776	exon7	c.A602G	p.Q201R	CTCTCCAGTGTTC	.	142	33	166	0	.	90	G	34646878	A	G	34646878	3	3	32	1	0	0	0	0	1	0	0	0	8225	188	7	2	628	2	KIAA1328	18	34646878	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	15382982	34646878	43430370	131	3768											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	51025767	51025767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DCC	NM_005215	exon27	c.C3998T	p.T1333I	TCCCCACAGCTTG	.	84	9	171	0	.	225	T	51025767	C	T	51025767	3	4	32	1	0	0	0	0	1	0	0	0	4282	478	17	3	4104	3	DCC	18	51025767	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	16378889	51025767	27051481	132	3769											
GALR1	2587	broad.mit.edu;mdanderson.org	37	18	74962595	74962595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GALR1	NM_001480	exon1	c.G91A	p.V31M	ATCGGCGTGGAGA	.	40	7	44	0	.	522	A	74962595	G	A	74962595	3	1	32	1	0	0	0	0	1	0	0	0	6227	1145	40	1	93	1	GALR1	18	74962595	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	23936828	74962595	3114653	133	3770											
SEMA6B	10501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4550257	4550257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SEMA6B	NM_032108	exon12	c.G1149A	p.M383I	GTACTGCATCCCG	.	107	26	138	0	.	91	T	4550257	C	T	4550257	3	4	32	1	0	0	0	0	1	0	0	0	14040	710	25	3	1541	3	SEMA6B	19	4550257	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		4550257	54578726	134	3771											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9011461	9011461	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	ENSG00000232861,NS,carcinoma,-2	MUC16	NM_024690	exon36	c.T38772C	p.D12924D	GATGGCATCCATT	.	154	12	241	0	.	566	G	9011461	A	G	9011461	2	3	32	1	0	0	0	0	0	0	0	1	9973	214	8	2		2	MUC16	19	9011461	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	4461204	9011461	50117522	135	3772											
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12155914	12155914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001080404	exon4	c.C302T	p.S101L	TCATATGATTGTA	.	124	31	142	0	.	.	A	12155914	G	A	12155914	3	1	32	1	0	0	0	0	1	0	0	0	18193	1294	45	3	1297	3	ZNF878	19	12155914	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	3144453	12155914	46973069	136	3773											
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12575313	12575313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF709	NM_152601	exon4	c.C1423T	p.P475S	CATAGGGTTTCTC	.	42	8	51	0	.	90	A	12575313	G	A	12575313	3	1	32	1	0	0	0	0	1	0	0	0	18110	1261	44	3	506	3	ZNF709	19	12575313	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	419399	12575313	46553670	137	3774											
TNPO2	30000	ucsc.edu;bcgsc.ca	37	19	12831732	12831732	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TNPO2	NM_013433	exon2	c.A60G	p.S20S	CGACTGTGAGTCT	.	38	4	58	0	.	227	C	12831732	T	C	12831732	2	2	32	1	0	0	0	0	0	0	0	1	16333	1683	59	2		2	TNPO2	19	12831732	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	256419	12831732	46297251	138	3775											
ZNF14	7561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19822650	19822650	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF14	NM_021030	exon4	c.T1440C	p.C480C	TTTTCCACACTGT	.	48	10	69	0	.	517	G	19822650	A	G	19822650	2	3	32	1	0	0	0	0	0	0	0	1	17725	157	6	2		2	ZNF14	19	19822650	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	6990918	19822650	39306333	139	3776											
ZNF675	171392	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23836584	23836584	+	Missense_Mutation	SNP	G	G	A	rs200866824	alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF675	NM_138330	exon4	c.C1151T	p.T384M	TGTTCCGTAAGAT	.	33	8	27	0	G|0.999;C|0.001	228	A	23836584	G	A	23836584	3	1	32	1	0	0	0	0	1	0	0	0	18079	1145	40	1	559	1	ZNF675	19	23836584	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	4013934	23836584	35292399	140	3777											
U2AF1L4	199746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36236067	36236067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	U2AF1L4	NM_144987	exon2	c.G91A	p.D31N	ACCGGTCCCCGTG	.	56	19	78	0	.	90	T	36236067	C	T	36236067	3	4	32	1	0	0	0	0	1	0	0	0	16819	855	30	3	595	3	U2AF1L4	19	36236067	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	12399483	36236067	22892916	141	3778											
ZNF585B	92285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37676268	37676268	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF585B	NM_152279	exon5	c.G2171C	p.G724A	GCCTTCCCACACT	.	311	73	332	1	.	91	G	37676268	C	G	37676268	3	3	32	1	0	0	0	0	1	0	0	0	18015	623	22	4	142	4	ZNF585B	19	37676268	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	1440201	37676268	21452715	142	3779											
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40485836	40485836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PSMC4	NM_006503	exon7	c.C786G	p.I262M	CATCATCTTCATA	.	161	34	188	0	.	91	G	40485836	C	G	40485836	3	3	32	1	0	0	0	0	1	0	0	0	12689	903	32	4	812	4	PSMC4	19	40485836	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	2809568	40485836	18643147	143	3780											
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969676	43969676	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LYPD3	NM_014400	exon1	c.A48T	p.A16A	CCAGCCTGCAGTC	.	56	12	64	0	.	91	A	43969676	T	A	43969676	2	1	32	1	0	0	0	0	0	0	0	1	9111	1567	55	4		4	LYPD3	19	43969676	Silent	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	3483840	43969676	15159307	144	3781											
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45853937	45853937	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KLC3	NM_177417	exon11	c.G1311A	p.E437E	CCGTGAGTCTATC	.	159	37	184	0	.	91	A	45853937	G	A	45853937	2	1	32	1	0	0	0	0	0	0	0	1	8335	1020	36	3		3	KLC3	19	45853937	Silent	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	1884261	45853937	13275046	145	3782											
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45924624	45924624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ERCC1	NM_001983	exon3	c.A133G	p.S45G	GAAGGCTCTGTGT	.	74	10	74	0	.	659	C	45924624	T	C	45924624	3	2	32	1	0	0	0	0	1	0	0	0	5212	1551	54	2	921	2	ERCC1	19	45924624	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	70687	45924624	13204359	146	3783											
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47569634	47569634	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZC3H4	NM_015168	exon15	c.G3891T	p.T1297T	GGAGGCCGTGGGG	.	64	12	73	0	.	74	A	47569634	C	A	47569634	2	1	32	1	0	0	0	0	0	0	0	1	17567	639	23	1		1	ZC3H4	19	47569634	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	1645010	47569634	11559349	147	3784											
GLTSCR2	29997	broad.mit.edu;bcgsc.ca	37	19	48257974	48257974	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GLTSCR2	NM_015710	exon8	c.A879G	p.T293T	GTCCACATTCCAG	.	97	7	94	0	.	514	G	48257974	A	G	48257974	2	3	32	1	0	0	0	0	0	0	0	1	6475	204	8	2		2	GLTSCR2	19	48257974	Silent	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	688340	48257974	10871009	148	3785											
KCNA7	3743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49574011	49574011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KCNA7	NM_031886	exon2	c.G680T	p.R227L	AGGAGGCGTACCA	.	67	20	83	0	.	90	A	49574011	C	A	49574011	3	1	32	1	0	0	0	0	1	0	0	0	8008	768	27	1	694	1	KCNA7	19	49574011	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	1316037	49574011	9554972	149	3786											
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249985	52249985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FPR1	NM_001193306	exon3	c.G263T	p.G88V	TGTCCTCCCATGG	.	183	35	204	0	.	524	A	52249985	C	A	52249985	3	1	32	1	0	0	0	0	1	0	0	0	6038	855	30	3	793	3	FPR1	19	52249985	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	2675974	52249985	6878998	150	3787											
PTPRH	5794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55715293	55715293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PTPRH	NM_002842	exon5	c.A743G	p.D248G	CCACCATCTCCAG	.	148	31	165	1	.	138	C	55715293	T	C	55715293	3	2	32	1	0	0	0	0	1	0	0	0	12803	1435	50	2	2668	2	PTPRH	19	55715293	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	3465308	55715293	3413690	151	3788											
ZNF749	388567	broad.mit.edu;bcgsc.ca	37	19	57955019	57955019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001023561	exon3	c.T503C	p.L168P	ACCTTCTCCAGCA	.	130	6	131	1	.	.	C	57955019	T	C	57955019	3	2	32	1	0	0	0	0	1	0	0	0	18128	1551	54	2	513	2	ZNF749	19	57955019	Missense_Mutation	SNP	T	TCGA-CC-A3M9-01A-11D-A20W-10	2239726	57955019	1173964	152	3789											
SNAP25	6616	ucsc.edu;bcgsc.ca	37	20	10273575	10273575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SNAP25	NM_003081	exon5	c.A209G	p.D70G	ACCAAGACATGAA	.	39	4	61	0	.	92	G	10273575	A	G	10273575	3	3	32	1	0	0	0	0	1	0	0	0	14830	275	10	2	223	2	SNAP25	20	10273575	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10		10273575	52751945	153	3790											
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34515736	34515736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PHF20	NM_016436	exon14	c.G2039T	p.C680F	GGGTCTGCATGGG	.	139	50	120	0	.	515	T	34515736	G	T	34515736	3	4	32	1	0	0	0	0	1	0	0	0	11831	1319	46	3	2089	3	PHF20	20	34515736	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	24242161	34515736	28509784	154	3791											
MATN4	8785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43933399	43933399	+	Missense_Mutation	SNP	C	C	T	rs114313957	byfrequency;alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MATN4	NM_030592	exon3	c.G112A	p.V38M	CAATCACGAACAC	.	116	28	88	0	C|0.987;G|0.013	90	T	43933399	C	T	43933399	3	4	32	1	0	0	0	0	1	0	0	0	9336	536	19	1	1665	1	MATN4	20	43933399	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	9417663	43933399	19092121	155	3792											
DSCR3	10311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38597864	38597864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DSCR3	NM_006052	exon8	c.T875A	p.L292Q	AGCTTCAGCGGGA	.	106	20	120	0	.	90	T	38597864	A	T	38597864	3	4	32	1	0	0	0	0	1	0	0	0	4771	188	7	4	22	4	DSCR3	21	38597864	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10		38597864	9532031	156	3793											
FOXRED2	80020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36892113	36892113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOXRED2	NM_001102371	exon7	c.G1525T	p.D509Y	AGACGTCCTTGTC	.	126	16	166	1	.	92	A	36892113	C	A	36892113	3	1	32	1	0	0	0	0	1	0	0	0	6034	855	30	3	541	3	FOXRED2	22	36892113	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		36892113	14412453	157	3794											
SSTR3	6753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37602722	37602722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SSTR3	NM_001051	exon2	c.T1121A	p.V374D	TGGCTGACCCGGC	.	58	16	89	0	.	522	T	37602722	A	T	37602722	3	4	32	1	0	0	0	0	1	0	0	0	15198	275	10	4	139	4	SSTR3	22	37602722	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	710609	37602722	13701844	158	3795											
USP9X	8239	broad.mit.edu;bcgsc.ca	37	X	41012219	41012219	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	USP9X	NM_001039591	exon14	c.C1782T	p.P594P	AAGTCCCCATGTG	.	67	5	55	0	.	563	T	41012219	C	T	41012219	2	4	32	1	0	0	0	0	0	0	0	1	17087	610	22	3		3	USP9X	23	41012219	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10		41012219	114258341	159	3796											
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99551540	99551540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH19	NM_001184880	exon6	c.C3182A	p.A1061E	CTAATCGCCTCAC	.	46	22	65	0	.	110	T	99551540	G	T	99551540	3	4	32	1	0	0	0	0	1	0	0	0	11514	1087	38	1	268	1	PCDH19	23	99551540	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	58539321	99551540	55719020	160	3797											
ZCCHC12	170261	broad.mit.edu;bcgsc.ca	37	X	117960058	117960058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZCCHC12	NM_173798	exon4	c.A851G	p.D284G	CTCAGGACCCTCC	.	136	6	98	0	.	131	G	117960058	A	G	117960058	3	3	32	1	0	0	0	0	1	0	0	0	17578	275	10	2	853	2	ZCCHC12	23	117960058	Missense_Mutation	SNP	A	TCGA-CC-A3M9-01A-11D-A20W-10	18408518	117960058	37310502	161	3798											
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135314089	135314089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAP7D3	NM_024597	exon8	c.G1027C	p.V343L	CGTCCACGCTCAC	.	101	55	114	0	.	110	G	135314089	C	G	135314089	3	3	32	1	0	0	0	0	1	0	0	0	9269	536	19	4	1647	4	MAP7D3	23	135314089	Missense_Mutation	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	17354031	135314089	19956471	162	3799											
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291370	141291370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAGEC2	NM_016249	exon3	c.C404T	p.S135F	AAAGAGGACTCAC	.	35	16	38	0	.	193	A	141291370	G	A	141291370	3	1	32	1	0	0	0	0	1	0	0	0	9181	1174	41	3	721	3	MAGEC2	23	141291370	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10	5977281	141291370	13979190	163	3800											
TMEM185A	84548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148693147	148693147	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TMEM185A	NM_032508	exon3	c.39-1G>T	.	AATTTACTAGGAG	.	56	32	60	0	.	131	A	148693147	C	A	148693147	5	1	32	1	0	0	0	0	0	0	1	0	16104	579	20	3	1038	3	TMEM185A	23	148693147	Splice_Site	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	7401777	148693147	6577413	164	3801											
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152835147	152835147	+	Silent	SNP	C	C	T	rs147874519	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP2B3	NM_021949	exon20	c.C3429T	p.D1143D	TCATGACGTAACC	.	191	41	135	0	C|1.000;T|0.000	109	T	152835147	C	T	152835147	2	4	32	1	0	0	0	0	0	0	0	1	1141	535	19	1		1	ATP2B3	23	152835147	Silent	SNP	C	TCGA-CC-A3M9-01A-11D-A20W-10	4142000	152835147	2435413	165	3802											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4966401	4966401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_032972	exon2	c.G782C	p.R261T	CTCAAAGATCCAG	.	162	21	284	0	.	.	C	4966401	G	C	4966401	3	2	32	1	0	0	0	0	1	0	0	0	11509	942	33	4	824	4	PCDH11Y	24	4966401	Missense_Mutation	SNP	G	TCGA-CC-A3M9-01A-11D-A20W-10		4966401	54407165	166	3803											
IGSF21	84966	hgsc.bcm.edu;bcgsc.ca	37	1	18691796	18691796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGSF21	NM_032880	exon6	c.A620G	p.Q207R	CCCTACAGGACAG	.	68	4	135	0	.	156	G	18691796	A	G	18691796	3	3	33	1	0	0	0	0	1	0	0	0	7599	188	7	2	642	2	IGSF21	1	18691796	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10		18691796	230558825	1	3804											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19186095	19186095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TAS1R2	NM_152232	exon1	c.G60C	p.E20D	AGCCGGCTCAGCC	.	135	90	186	0	.	93	G	19186095	C	G	19186095	3	3	33	1	0	0	0	0	1	0	0	0	15560	796	28	4	2483	4	TAS1R2	1	19186095	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	494299	19186095	230064526	2	3805											
SRRM1	10250	hgsc.bcm.edu;bcgsc.ca	37	1	24997900	24997900	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SRRM1	NM_005839	exon16	c.A2424G	p.G808G	AGGTGGAAAGAAA	.	66	4	100	0	.	93	G	24997900	A	G	24997900	2	3	33	1	0	0	0	0	0	0	0	1	15167	233	9	2		2	SRRM1	1	24997900	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	5811805	24997900	224252721	3	3806											
CCDC30	728621	hgsc.bcm.edu;bcgsc.ca	37	1	43076653	43076653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC30	NM_001080850	exon10	c.T1388C	p.V463A	AGCATGTCAAAAG	.	65	4	82	0	.	90	C	43076653	T	C	43076653	3	2	33	1	0	0	0	0	1	0	0	0	2805	1667	58	2	1422	2	CCDC30	1	43076653	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	18078753	43076653	206173968	4	3807											
DMBX1	127343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46976674	46976674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMBX1	NM_147192	exon3	c.A416G	p.Q139R	AGCTCCAGAAGCA	.	117	43	124	0	.	227	G	46976674	A	G	46976674	3	3	33	1	0	0	0	0	1	0	0	0	4578	188	7	2	426	2	DMBX1	1	46976674	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	3900021	46976674	202273947	5	3808											
ACADM	34	hgsc.bcm.edu;bcgsc.ca	37	1	76216192	76216192	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACADM	NM_001127328	exon10	c.T918C	p.Y306Y	CAAGTATGCCCTG	.	86	4	75	0	.	155	C	76216192	T	C	76216192	2	2	33	1	0	0	0	0	0	0	0	1	113	1471	51	2		2	ACADM	1	76216192	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	29239518	76216192	173034429	6	3809											
GBP5	115362	hgsc.bcm.edu;bcgsc.ca	37	1	89728392	89728392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GBP5	NM_052942	exon10	c.T1439C	p.L480P	TCTGTGAGAGCCT	.	75	4	102	0	.	91	G	89728392	A	G	89728392	3	3	33	1	0	0	0	0	1	0	0	0	6277	304	11	2	333	2	GBP5	1	89728392	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	13512200	89728392	159522229	7	3810											
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	120458918	120458919	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NOTCH2	NM_024408	exon34	c.6427_6428insTT	p.E2143fs	AACTCTCAGACAG	.	216	49	217	0	.	1441	AA	120458919	-	AA	120458918	7	5	33	1	0	1	1	0	0	0	0	0	10548	835	29	0	992	0	NOTCH2	1	120458918	Frame_Shift_Ins	INS	-	TCGA-CC-A3MA-01A-11D-A20W-10	30730526	120458918	128791703	8	3811											
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161989875	161989875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OLFML2B	NM_015441	exon2	c.G272T	p.R91M	TTGATCCTCTGGC	.	223	49	127	0	.	69	A	161989875	C	A	161989875	3	1	33	1	0	0	0	0	1	0	0	0	10858	681	24	3	2008	3	OLFML2B	1	161989875	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	41530957	161989875	87260746	9	3812											
ZBTB41	360023	hgsc.bcm.edu;bcgsc.ca	37	1	197169179	197169179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB41	NM_194314	exon1	c.T425C	p.F142S	TAAAGAAATTCAA	.	83	4	42	0	.	92	G	197169179	A	G	197169179	3	3	33	1	0	0	0	0	1	0	0	0	17540	14	1	2	2344	2	ZBTB41	1	197169179	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	35179304	197169179	52081442	10	3813											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204401382	204401382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3C2B	NM_002646	exon28	c.C4101G	p.I1367M	ATCACTGATTCGG	.	360	81	184	0	.	1310	C	204401382	G	C	204401382	3	2	33	1	0	0	0	0	1	0	0	0	11910	1280	45	4	831	4	PIK3C2B	1	204401382	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	7232203	204401382	44849239	11	3814											
EFEMP1	2202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56145028	56145028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EFEMP1	NM_001039349	exon4	c.G289A	p.A97T	TGGTTGCCCCTGA	.	199	78	217	0	.	520	T	56145028	C	T	56145028	3	4	33	1	0	0	0	0	1	0	0	0	4941	739	26	3	1224	3	EFEMP1	2	56145028	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10		56145028	187054345	12	3815											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141092035	141092035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRP1B	NM_018557	exon79	c.A12210G	p.L4070L	TCTCTGTAAGTTC	.	252	94	288	0	.	311	C	141092035	T	C	141092035	2	2	33	1	0	0	0	0	0	0	0	1	8955	1635	57	2		2	LRP1B	2	141092035	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	84947007	141092035	102107338	13	3816											
TMEFF2	23671	hgsc.bcm.edu;bcgsc.ca	37	2	193056689	193056689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMEFF2	NM_016192	exon2	c.T199C	p.F67L	AGAGGAAGAGATC	.	91	4	86	0	.	524	G	193056689	A	G	193056689	3	3	33	1	0	0	0	0	1	0	0	0	16011	72	3	2	961	2	TMEFF2	2	193056689	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	51964654	193056689	50142684	14	3817											
DNAH7	56171	hgsc.bcm.edu;bcgsc.ca	37	2	196750895	196750895	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH7	NM_018897	exon34	c.A5508G	p.R1836R	ATCATTTCTCTCC	.	100	4	58	0	.	102	C	196750895	T	C	196750895	2	2	33	1	0	0	0	0	0	0	0	1	4606	1780	62	2		2	DNAH7	2	196750895	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	3694206	196750895	46448478	15	3818											
STK17B	9262	hgsc.bcm.edu;bcgsc.ca	37	2	197021354	197021354	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STK17B	NM_004226	exon3	c.A144G	p.R48R	ACATTGTCTAACC	.	98	4	102	0	.	334	C	197021354	T	C	197021354	2	2	33	1	0	0	0	0	0	0	0	1	15290	1664	58	2		2	STK17B	2	197021354	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	270459	197021354	46178019	16	3819											
SGOL2	151246	hgsc.bcm.edu;bcgsc.ca	37	2	201437542	201437542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGOL2	NM_001160046	exon7	c.A2473G	p.I825V	AACCAAATATATG	.	119	5	116	0	.	94	G	201437542	A	G	201437542	3	3	33	1	0	0	0	0	1	0	0	0	14217	101	4	2	2495	2	SGOL2	2	201437542	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	4416188	201437542	41761831	17	3820											
COL4A4	1286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227922184	227922184	+	Missense_Mutation	SNP	G	G	A	rs199562472		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL4A4	NM_000092	exon29	c.C2516T	p.P839L	AGTCCCGGTTGCC	.	75	23	61	1	G|0.999;A|0.001	142	A	227922184	G	A	227922184	3	1	33	1	0	0	0	0	1	0	0	0	3693	1116	39	1	2636	1	COL4A4	2	227922184	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	26484642	227922184	15277189	18	3821											
CAPN10	11132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241534647	241534647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CAPN10	NM_023085	exon7	c.G1204T	p.D402Y	GTGGGTGACAGTC	.	293	72	222	0	.	656	T	241534647	G	T	241534647	3	4	33	1	0	0	0	0	1	0	0	0	2623	1290	45	3	1230	3	CAPN10	2	241534647	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	13612463	241534647	1664726	19	3822											
TRNT1	51095	hgsc.bcm.edu;bcgsc.ca	37	3	3189269	3189269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRNT1	NM_182916	exon7	c.T938C	p.L313S	TGAGGTTGAAGAT	.	102	5	148	0	.	90	C	3189269	T	C	3189269	3	2	33	1	0	0	0	0	1	0	0	0	16570	1821	63	2	960	2	TRNT1	3	3189269	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		3189269	194833161	20	3823											
ZNF662	389114	hgsc.bcm.edu;bcgsc.ca	37	3	42954744	42954744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF662	NM_207404	exon4	c.A203G	p.E68G	TGGAAGAGCCATT	.	62	4	127	0	.	90	G	42954744	A	G	42954744	3	3	33	1	0	0	0	0	1	0	0	0	18068	304	11	2	400	2	ZNF662	3	42954744	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	39765475	42954744	155067686	21	3824											
FYCO1	79443	hgsc.bcm.edu;bcgsc.ca	37	3	46021198	46021198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FYCO1	NM_024513	exon4	c.A287G	p.E96G	CTTACCTCTGAGA	.	125	5	210	0	.	91	C	46021198	T	C	46021198	3	2	33	1	0	0	0	0	1	0	0	0	6125	1565	54	2	4209	2	FYCO1	3	46021198	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	3066454	46021198	152001232	22	3825											
ITIH3	3699	broad.mit.edu;bcgsc.ca	37	3	52842646	52842646	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITIH3	NM_002217	exon22	c.A2622G	p.E874E	CGGAGAAGGGCTG	.	142	6	202	1	.	93	G	52842646	A	G	52842646	2	3	33	1	0	0	0	0	0	0	0	1	7905	69	3	2		2	ITIH3	3	52842646	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	6821448	52842646	145179784	23	3826											
TMF1	7110	hgsc.bcm.edu;bcgsc.ca	37	3	69079080	69079080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMF1	NM_007114	exon11	c.A2480G	p.Q827R	GACATCTGAATTT	.	77	4	132	0	.	90	C	69079080	T	C	69079080	3	2	33	1	0	0	0	0	1	0	0	0	16225	1580	55	2	829	2	TMF1	3	69079080	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	16236434	69079080	128943350	24	3827											
CNTN3	5067	hgsc.bcm.edu;bcgsc.ca	37	3	74418520	74418520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CNTN3	NM_020872	exon7	c.A766G	p.I256V	GAGGTATGGGACT	.	81	4	184	0	.	137	C	74418520	T	C	74418520	3	2	33	1	0	0	0	0	1	0	0	0	3642	1464	51	2	2384	2	CNTN3	3	74418520	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	5339440	74418520	123603910	25	3828											
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93611837	93611837	+	Silent	SNP	A	A	G	rs199469491	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PROS1	NM_000313	exon10	c.T1095C	p.N365N	ATGTTCATTCTTA	.	421	172	371	0	A|0.999;C|0.001	153	G	93611837	A	G	93611837	2	3	33	1	0	0	0	0	0	0	0	1	12558	214	8	2		2	PROS1	3	93611837	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	19193317	93611837	104410593	26	3829											
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126071499	126071499	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLF15	NM_014079	exon2	c.C267T	p.G89G	GCCCCCGCCACTG	.	130	60	64	0	.	91	A	126071499	G	A	126071499	2	1	33	1	0	0	0	0	0	0	0	1	8343	1074	38	1		1	KLF15	3	126071499	Silent	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	32459662	126071499	71950931	27	3830											
PIK3R4	30849	hgsc.bcm.edu;bcgsc.ca	37	3	130449233	130449233	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3R4	NM_014602	exon5	c.T1504C	p.L502L	TTTTTAACTGTAC	.	86	4	85	0	.	1471	G	130449233	A	G	130449233	2	3	33	1	0	0	0	0	0	0	0	1	11921	40	2	2		2	PIK3R4	3	130449233	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	4377734	130449233	67573197	28	3831											
ATP13A4	84239	ucsc.edu;bcgsc.ca	37	3	193151700	193151700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP13A4	NM_032279	exon25	c.A2776G	p.N926D	GGCTGTTTGTCTC	.	28	4	30	0	.	92	C	193151700	T	C	193151700	3	2	33	1	0	0	0	0	1	0	0	0	1126	1841	64	2	838	2	ATP13A4	3	193151700	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	62702467	193151700	4870730	29	3832											
FBXL5	26234	hgsc.bcm.edu;bcgsc.ca	37	4	15629615	15629615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FBXL5	NM_012161	exon7	c.A934G	p.M312V	TTTCCATTTGTGC	.	82	4	86	0	.	226	C	15629615	T	C	15629615	3	2	33	1	0	0	0	0	1	0	0	0	5722	1493	52	2	1161	2	FBXL5	4	15629615	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		15629615	175524661	30	3833											
CORIN	10699	hgsc.bcm.edu;bcgsc.ca	37	4	47685795	47685795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CORIN	NM_006587	exon7	c.G974A	p.C325Y	CCATCACACACAA	.	67	4	60	0	.	91	T	47685795	C	T	47685795	3	4	33	1	0	0	0	0	1	0	0	0	3752	478	17	3	2218	3	CORIN	4	47685795	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	32056180	47685795	143468481	31	3834											
FRYL	285527	hgsc.bcm.edu;bcgsc.ca	37	4	48545872	48545872	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FRYL	NM_015030	exon44	c.T5544C	p.V1848V	GGAGAGAACATCA	.	90	4	68	0	.	69	G	48545872	A	G	48545872	2	3	33	1	0	0	0	0	0	0	0	1	6064	233	9	2		2	FRYL	4	48545872	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	860077	48545872	142608404	32	3835											
FIP1L1	81608	hgsc.bcm.edu;bcgsc.ca	37	4	54265931	54265931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FIP1L1	NM_030917	exon10	c.A740G	p.E247G	AGAAAGAAACTGC	.	87	5	109	0	.	1083	G	54265931	A	G	54265931	3	3	33	1	0	0	0	0	1	0	0	0	5896	246	9	2	778	2	FIP1L1	4	54265931	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	5720059	54265931	136888345	33	3836											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936570	62936570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LPHN3	NM_015236	exon23	c.G4354A	p.G1452R	AAAGATGGGACCC	.	83	32	90	0	.	508	A	62936570	G	A	62936570	3	1	33	1	0	0	0	0	1	0	0	0	8917	1348	47	3	4444	3	LPHN3	4	62936570	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	8670639	62936570	128217706	34	3837											
MTHFD2L	441024	hgsc.bcm.edu;bcgsc.ca	37	4	75023925	75023925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MTHFD2L	NM_001144978	exon1	c.A70G	p.S24G	GGCAGAAGCACAG	.	101	5	36	0	.	91	G	75023925	A	G	75023925	3	3	33	1	0	0	0	0	1	0	0	0	9930	72	3	2	72	2	MTHFD2L	4	75023925	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	12087355	75023925	116130351	35	3838											
GSTCD	79807	hgsc.bcm.edu;bcgsc.ca	37	4	106650634	106650634	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GSTCD	NM_001031720	exon5	c.T1218C	p.P406P	TCTCCCTGCAGCA	.	95	4	96	0	.	92	C	106650634	T	C	106650634	2	2	33	1	0	0	0	0	0	0	0	1	6835	1567	55	2		2	GSTCD	4	106650634	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	31626709	106650634	84503642	36	3839											
NAF1	92345	hgsc.bcm.edu;bcgsc.ca	37	4	164058390	164058390	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NAF1	NM_138386	exon6	c.A891G	p.S297S	TGCATCTGATCCC	.	69	4	144	0	.	70	C	164058390	T	C	164058390	2	2	33	1	0	0	0	0	0	0	0	1	10140	1567	55	2		2	NAF1	4	164058390	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	57407756	164058390	27095886	37	3840											
CDH6	1004	hgsc.bcm.edu;bcgsc.ca	37	5	31305284	31305284	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH6	NM_004932	exon7	c.T1003C	p.L335L	AAGCTCTTGGACT	.	54	5	61	0	.	159	C	31305284	T	C	31305284	2	2	33	1	0	0	0	0	0	0	0	1	3114	1606	56	2		2	CDH6	5	31305284	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		31305284	149609976	38	3841											
RASA1	5921	broad.mit.edu;bcgsc.ca	37	5	86665656	86665668	+	Frame_Shift_Del	DEL	AGCACTTTAGTGA	AGCACTTTAGTGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	AGCACTTTAGTGA	AGCACTTTAGTGA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASA1	NM_002890	exon12	c.1637_1649del	p.546_550del	TAGTTCAGCACTT	.	143	12	188	0	.	661	-	86665668	AGCACTTTAGTGA	-	86665656	7	5	33	1	0	1	0	1	0	0	0	0	13060	188	7	0	1695	0	RASA1	5	86665656	Frame_Shift_Del	DEL	AGCACTTTAGTGA	TCGA-CC-A3MA-01A-11D-A20W-10	55360372	86665656	94249604	39	3842											
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136963985	136963985	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLHL3	NM_017415	exon14	c.1591+1G>T	.	TCATTACCTGCGT	.	93	42	99	0	.	90	A	136963985	C	A	136963985	5	1	33	1	0	0	0	0	0	0	1	0	8383	521	18	3	183	3	KLHL3	5	136963985	Splice_Site	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	50298329	136963985	43951275	40	3843											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7580098	7580098	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DSP	NM_004415	exon23	c.C3675G	p.S1225S	GATATCCATGCAA	.	91	39	116	0	.	518	G	7580098	C	G	7580098	2	3	33	1	0	0	0	0	0	0	0	1	4781	581	21	4		4	DSP	6	7580098	Silent	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10		7580098	163534969	41	3844											
EYS	346007	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	64498005	64498005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EYS	NM_001142800	exon39	c.T7716C	p.G2572G	TTGAAAACCATTT	.	56	5	58	0	.	660	G	64498005	A	G	64498005	2	3	33	1	0	0	0	0	0	0	0	1	5332	30	2	2		2	EYS	6	64498005	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	56917907	64498005	106617062	42	3845											
SNAP91	9892	hgsc.bcm.edu;bcgsc.ca	37	6	84371275	84371275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNAP91	NM_001242794	exon5	c.A398G	p.E133G	GCCTTTTCATTCA	.	72	4	134	0	.	23	C	84371275	T	C	84371275	3	2	33	1	0	0	0	0	1	0	0	0	14833	1783	62	2	2421	2	SNAP91	6	84371275	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	19873270	84371275	86743792	43	3846											
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105244550	105244550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HACE1	NM_020771	exon9	c.G796A	p.E266K	GGTCTTCATTCTG	.	44	23	114	0	.	663	T	105244550	C	T	105244550	3	4	33	1	0	0	0	0	1	0	0	0	6940	835	29	3	1997	3	HACE1	6	105244550	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	20873275	105244550	65870517	44	3847											
SNX3	8724	hgsc.bcm.edu;bcgsc.ca	37	6	108544209	108544209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNX3	NM_003795	exon2	c.G203A	p.R68K	CTTCTTCTAACAG	.	50	4	71	0	.	226	T	108544209	C	T	108544209	3	4	33	1	0	0	0	0	1	0	0	0	14899	913	32	3	297	3	SNX3	6	108544209	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	3299659	108544209	62570858	45	3848											
DCBLD1	285761	hgsc.bcm.edu;bcgsc.ca	37	6	117861869	117861869	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCBLD1	NM_173674	exon10	c.A1140G	p.Q380Q	AGTGCAAAACAAT	.	95	4	131	0	.	91	G	117861869	A	G	117861869	2	3	33	1	0	0	0	0	0	0	0	1	4280	11	1	2		2	DCBLD1	6	117861869	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	9317660	117861869	53253198	46	3849											
HDDC2	51020	hgsc.bcm.edu;bcgsc.ca	37	6	125619942	125619942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HDDC2	NM_016063	exon3	c.T227C	p.V76A	TCATGAACCAGGG	.	89	4	131	0	.	90	G	125619942	A	G	125619942	3	3	33	1	0	0	0	0	1	0	0	0	7016	43	2	2	403	2	HDDC2	6	125619942	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	7758073	125619942	45495125	47	3850											
ZC3H12D	340152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	149783104	149783104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_207360	exon3	c.A308G	p.H103R	TTTCCATGGCTAC	.	41	4	94	0	.	.	C	149783104	T	C	149783104	3	2	33	1	0	0	0	0	1	0	0	0	17561	1464	51	2	1291	2	ZC3H12D	6	149783104	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	24163162	149783104	21331963	48	3851											
SYNE1	23345	hgsc.bcm.edu;bcgsc.ca	37	6	152763360	152763360	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE1	NM_033071	exon31	c.A3879G	p.S1293S	CTTTGCTGAGATC	.	73	4	107	0	.	607	C	152763360	T	C	152763360	2	2	33	1	0	0	0	0	0	0	0	1	15442	1567	55	2		2	SYNE1	6	152763360	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	2980256	152763360	18351707	49	3852											
BBS9	27241	hgsc.bcm.edu;bcgsc.ca	37	7	33217138	33217138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BBS9	NM_014451	exon5	c.T377C	p.M126T	AATTGATGTATGA	.	70	4	64	0	.	230	C	33217138	T	C	33217138	3	2	33	1	0	0	0	0	1	0	0	0	1342	1464	51	2	391	2	BBS9	7	33217138	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		33217138	125921525	50	3853											
PCLO	27445	hgsc.bcm.edu;bcgsc.ca	37	7	82580361	82580361	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PCLO	NM_014510	exon6	c.T9543C	p.V3181V	AGTGGGAACAGAG	.	100	4	90	0	.	29	G	82580361	A	G	82580361	2	3	33	1	0	0	0	0	0	0	0	1	11583	233	9	2		2	PCLO	7	82580361	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	49363223	82580361	76558302	51	3854											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100334504	100334504	+	RNA	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZAN	.	.	.	.	CCGACCTATGGGA	.	101	45	86	0	.	142	A	100334504	T	A	100334504	1	1	33	0	1	0	0	0	0	0	0	0	17510	1522	53	4		4	ZAN	7	100334504	RNA	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	17754143	100334504	58804159	52	3855											
RELN	5649	hgsc.bcm.edu;bcgsc.ca	37	7	103162472	103162472	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RELN	NM_173054	exon48	c.T7665C	p.S2555S	CACCCCACTGAAA	.	75	4	57	0	.	574	G	103162472	A	G	103162472	2	3	33	1	0	0	0	0	0	0	0	1	13220	156	6	2		2	RELN	7	103162472	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	2827968	103162472	55976191	53	3856											
CCDC136	64753	hgsc.bcm.edu;bcgsc.ca	37	7	128452197	128452197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC136	NM_022742	exon13	c.A2372G	p.D791G	GCTATGACAGCAG	.	103	5	110	0	.	24	G	128452197	A	G	128452197	3	3	33	1	0	0	0	0	1	0	0	0	2770	275	10	2	2422	2	CCDC136	7	128452197	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	25289725	128452197	30686466	54	3857											
DGKI	9162	hgsc.bcm.edu;bcgsc.ca	37	7	137374712	137374712	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DGKI	NM_004717	exon2	c.T438C	p.A146A	TGCAGGAGCCAGA	.	87	5	75	0	.	228	G	137374712	A	G	137374712	2	3	33	1	0	0	0	0	0	0	0	1	4471	291	11	2		2	DGKI	7	137374712	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	8922515	137374712	21763951	55	3858											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149129992	149129992	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF777	NM_015694	exon6	c.C1371T	p.D457D	CTCCTCGTCTTGT	.	143	63	141	0	.	136	A	149129992	G	A	149129992	2	1	33	1	0	0	0	0	0	0	0	1	18147	1136	40	1		1	ZNF777	7	149129992	Silent	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	11755280	149129992	10008671	56	3859											
SGK3	23678	hgsc.bcm.edu;bcgsc.ca	37	8	67752280	67752280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGK3	NM_001033578	exon11	c.A784G	p.R262G	GAGCACAGAGCTA	.	75	4	85	0	.	1003	G	67752280	A	G	67752280	3	3	33	1	0	0	0	0	1	0	0	0	14212	180	7	2	822	2	SGK3	8	67752280	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10		67752280	78611742	57	3860											
SLC7A13	157724	hgsc.bcm.edu;bcgsc.ca	37	8	87242258	87242258	+	Silent	SNP	A	A	G	rs141043236	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC7A13	NM_138817	exon1	c.T249C	p.F83F	CTTGAGAAAATAG	.	87	4	53	0	A|0.996;G|0.004	90	G	87242258	A	G	87242258	2	3	33	1	0	0	0	0	0	0	0	1	14695	243	9	2		2	SLC7A13	8	87242258	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	19489978	87242258	59121764	58	3861											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	98943556	98943556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MATN2	NM_002380	exon3	c.C518G	p.P173R	GGAGACCTCAGGA	.	95	18	73	0	.	24	G	98943556	C	G	98943556	3	3	33	1	0	0	0	0	1	0	0	0	9334	681	24	4	524	4	MATN2	8	98943556	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	11701298	98943556	47420466	59	3862											
RASEF	158158	hgsc.bcm.edu;bcgsc.ca	37	9	85627416	85627416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASEF	NM_152573	exon5	c.A776G	p.Q259R	TTTGATTGTTCTT	.	77	4	74	0	.	280	C	85627416	T	C	85627416	3	2	33	1	0	0	0	0	1	0	0	0	13068	1812	63	2	1498	2	RASEF	9	85627416	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		85627416	55586015	60	3863											
ASB13	79754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5691033	5691033	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ASB13	NM_024701	exon4	c.C417T	p.V139V	GGCCCCGACGTCA	.	105	61	98	0	.	227	A	5691033	G	A	5691033	2	1	33	1	0	0	0	0	0	0	0	1	1017	1045	37	1		1	ASB13	10	5691033	Silent	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10		5691033	129843714	61	3864											
ATAD1	84896	hgsc.bcm.edu;bcgsc.ca	37	10	89544340	89544340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATAD1	NM_032810	exon5	c.T470C	p.L157P	GGCTGAAGGTTAA	.	89	5	108	0	.	578	G	89544340	A	G	89544340	3	3	33	1	0	0	0	0	1	0	0	0	1070	72	3	2	639	2	ATAD1	10	89544340	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	83853307	89544340	45990407	62	3865											
IDE	3416	hgsc.bcm.edu;bcgsc.ca	37	10	94274762	94274762	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IDE	NM_004969	exon5	c.A699G	p.E233E	AATGCCTTCTTGG	.	64	4	108	0	.	92	C	94274762	T	C	94274762	2	2	33	1	0	0	0	0	0	0	0	1	7493	1606	56	2		2	IDE	10	94274762	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	4730422	94274762	41259985	63	3866											
CCNJ	54619	hgsc.bcm.edu;bcgsc.ca	37	10	97816897	97816897	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCNJ	NM_001134375	exon5	c.T633C	p.A211A	TGTGGCTTCTTCG	.	133	6	293	0	.	91	C	97816897	T	C	97816897	2	2	33	1	0	0	0	0	0	0	0	1	2928	1596	56	2		2	CCNJ	10	97816897	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	3542135	97816897	37717850	64	3867											
GPAM	57678	hgsc.bcm.edu;bcgsc.ca	37	10	113940243	113940243	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPAM	NM_020918	exon4	c.T213C	p.T71T	CTGGGGAGTGCAG	.	47	4	92	0	.	92	G	113940243	A	G	113940243	2	3	33	1	0	0	0	0	0	0	0	1	6588	291	11	2		2	GPAM	10	113940243	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	16123346	113940243	21594504	65	3868											
VWA2	340706	hgsc.bcm.edu;bcgsc.ca	37	10	116045937	116045937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VWA2	NM_001272046	exon11	c.A1237G	p.I413V	GATGGCATTCCCT	.	72	4	115	0	.	156	G	116045937	A	G	116045937	3	3	33	1	0	0	0	0	1	0	0	0	17236	217	8	2	1275	2	VWA2	10	116045937	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	2105694	116045937	19488810	66	3869											
FANK1	92565	hgsc.bcm.edu;bcgsc.ca	37	10	127697829	127697829	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FANK1	NM_145235	exon10	c.C966T	p.D322D	TTTTGACAGACAG	.	58	5	106	0	.	91	T	127697829	C	T	127697829	2	4	33	1	0	0	0	0	0	0	0	1	5672	477	17	3		3	FANK1	10	127697829	Silent	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	11651892	127697829	7836918	67	3870											
PSMD13	5719	hgsc.bcm.edu;bcgsc.ca	37	11	248788	248788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PSMD13	NM_175932	exon6	c.A587G	p.Q196R	AGCAGCAGGAGAG	.	72	4	119	0	.	515	G	248788	A	G	248788	3	3	33	1	0	0	0	0	1	0	0	0	12696	188	7	2	692	2	PSMD13	11	248788	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10		248788	134757728	68	3871											
AP2A2	161	ucsc.edu;bcgsc.ca	37	11	993286	993286	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AP2A2	NM_001242837	exon12	c.T1458C	p.A486A	GCAGGCTCTTCAG	.	30	4	57	0	.	90	C	993286	T	C	993286	2	2	33	1	0	0	0	0	0	0	0	1	740	1538	54	2		2	AP2A2	11	993286	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	744498	993286	134013230	69	3872											
ARFIP2	23647	hgsc.bcm.edu;bcgsc.ca	37	11	6501574	6501574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARFIP2	NM_012402	exon2	c.T78C	p.P26P	ATCTTCAGGAAGC	.	70	4	132	0	.	90	G	6501574	A	G	6501574	2	3	33	1	0	0	0	0	0	0	0	1	855	175	7	2		2	ARFIP2	11	6501574	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	5508288	6501574	128504942	70	3873											
USP47	55031	hgsc.bcm.edu;bcgsc.ca	37	11	11941963	11941963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP47	NM_017944	exon9	c.G936A	p.M312I	AACCATGCATAGG	.	58	4	102	0	.	660	A	11941963	G	A	11941963	3	1	33	1	0	0	0	0	1	0	0	0	17075	1319	46	3	970	3	USP47	11	11941963	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	5440389	11941963	123064553	71	3874											
SLC17A6	57084	hgsc.bcm.edu;bcgsc.ca	37	11	22381052	22381052	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC17A6	NM_020346	exon4	c.A552G	p.R184R	TGTCAGAATACTG	.	96	4	139	0	.	580	G	22381052	A	G	22381052	2	3	33	1	0	0	0	0	0	0	0	1	14421	243	9	2		2	SLC17A6	11	22381052	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	10439089	22381052	112625464	72	3875											
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32977609	32977609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	QSER1	NM_001076786	exon7	c.A4306G	p.K1436E	AACAAGAAGGAAT	.	71	4	115	0	.	95	G	32977609	A	G	32977609	3	3	33	1	0	0	0	0	1	0	0	0	12882	247	9	2	4324	2	QSER1	11	32977609	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	10596557	32977609	102028907	73	3876											
LRTOMT	220074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71819858	71819858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRTOMT	NM_001145308	exon7	c.C763A	p.Q255K	TTCTTGCAGTATG	.	125	45	108	0	.	68	A	71819858	C	A	71819858	3	1	33	1	0	0	0	0	1	0	0	0	9046	711	25	3	1382	3	LRTOMT	11	71819858	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	38842249	71819858	63186658	74	3877											
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103018563	103018563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DYNC2H1	NM_001377	exon19	c.T2765C	p.L922P	ATGATCTCATCCA	.	64	4	41	0	.	68	C	103018563	T	C	103018563	3	2	33	1	0	0	0	0	1	0	0	0	4846	1551	54	2	2839	2	DYNC2H1	11	103018563	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	31198705	103018563	31987953	75	3878											
SLCO1B3	28234	hgsc.bcm.edu;bcgsc.ca	37	12	21068948	21068948	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLCO1B3	NM_019844	exon16	c.T1876C	p.L626L	GTCTACTTGGGCT	.	58	5	59	0	.	155	C	21068948	T	C	21068948	2	2	33	1	0	0	0	0	0	0	0	1	14724	1606	56	2		2	SLCO1B3	12	21068948	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		21068948	112782947	76	3879											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46246364	46246376	+	Frame_Shift_Del	DEL	TCCCGACTCAGGA	TCCCGACTCAGGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	TCCCGACTCAGGA	TCCCGACTCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARID2	NM_152641	exon15	c.4458_4470del	p.1486_1490del	AGCAGTTCCCGAC	.	81	23	210	0	.	100	-	46246376	TCCCGACTCAGGA	-	46246364	7	5	33	1	0	1	0	1	0	0	0	0	915	1770	62	0	4516	0	ARID2	12	46246364	Frame_Shift_Del	DEL	TCCCGACTCAGGA	TCGA-CC-A3MA-01A-11D-A20W-10	25177416	46246364	87605531	77	3880											
USP15	9958	hgsc.bcm.edu;bcgsc.ca	37	12	62790141	62790141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP15	NM_001252078	exon20	c.T2637C	p.A879A	GATTGCTGTTTCC	.	75	6	124	0	.	1084	C	62790141	T	C	62790141	2	2	33	1	0	0	0	0	0	0	0	1	17043	1567	55	2		2	USP15	12	62790141	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	16543777	62790141	71061754	78	3881											
PPP1R12A	4659	hgsc.bcm.edu;bcgsc.ca	37	12	80266678	80266678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R12A	NM_002480	exon2	c.T278C	p.V93A	TTTTCTACCAGAA	.	74	4	122	0	.	273	G	80266678	A	G	80266678	3	3	33	1	0	0	0	0	1	0	0	0	12354	391	14	2	2910	2	PPP1R12A	12	80266678	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	17476537	80266678	53585217	79	3882											
PLXNC1	10154	hgsc.bcm.edu;bcgsc.ca	37	12	94631455	94631455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNC1	NM_005761	exon10	c.T1996C	p.S666P	ATTAAGTCCATTG	.	55	4	71	0	.	92	C	94631455	T	C	94631455	3	2	33	1	0	0	0	0	1	0	0	0	12126	1667	58	2	2034	2	PLXNC1	12	94631455	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	14364777	94631455	39220440	80	3883											
ANO4	121601	hgsc.bcm.edu;bcgsc.ca	37	12	101333217	101333217	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANO4	NM_178826	exon3	c.A180G	p.E60E	ATTGGAAGCCGGG	.	63	4	110	0	.	96	G	101333217	A	G	101333217	2	3	33	1	0	0	0	0	0	0	0	1	699	69	3	2		2	ANO4	12	101333217	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	6701762	101333217	32518678	81	3884											
DAO	1610	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	109288138	109288138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DAO	NM_001917	exon7	c.A607G	p.M203V	CAGATCATGAAGG	.	44	4	83	0	.	92	G	109288138	A	G	109288138	3	3	33	1	0	0	0	0	1	0	0	0	4231	217	8	2	629	2	DAO	12	109288138	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	7954921	109288138	24563757	82	3885											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120241020	120241020	+	Missense_Mutation	SNP	C	C	G	rs145965687	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CIT	NM_001206999	exon10	c.G1285C	p.G429R	ATCTACCAAGAAT	.	77	53	112	0	C|0.999;T|0.000	399	G	120241020	C	G	120241020	3	3	33	1	0	0	0	0	1	0	0	0	3438	594	21	4	4950	4	CIT	12	120241020	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	10952882	120241020	13610875	83	3886											
CCDC62	84660	hgsc.bcm.edu;bcgsc.ca	37	12	123285708	123285708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC62	NM_201435	exon9	c.C1015T	p.P339S	AACCACCCAAAAG	.	81	4	124	0	.	157	T	123285708	C	T	123285708	3	4	33	1	0	0	0	0	1	0	0	0	2833	623	22	3	1049	3	CCDC62	12	123285708	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	3044688	123285708	10566187	84	3887											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124824953	124824953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NCOR2	NM_006312	exon38	c.C5375T	p.S1792F	GACGAGGACGTGG	.	51	4	90	0	.	229	A	124824953	G	A	124824953	3	1	33	1	0	0	0	0	1	0	0	0	10236	1174	41	3	2217	3	NCOR2	12	124824953	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	1539245	124824953	9026942	85	3888											
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23909856	23909856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SACS	NM_014363	exon10	c.A8159G	p.D2720G	ATTCTGTCTGATG	.	72	4	106	0	.	298	C	23909856	T	C	23909856	3	2	33	1	0	0	0	0	1	0	0	0	13804	1667	58	2	5584	2	SACS	13	23909856	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		23909856	91260022	86	3889											
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99038053	99038053	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FARP1	NM_005766	exon8	c.A744T	p.G248G	CACGGGAATTCTA	.	39	20	25	0	.	290	T	99038053	A	T	99038053	2	4	33	1	0	0	0	0	0	0	0	1	5676	233	9	4		4	FARP1	13	99038053	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	75128197	99038053	16131825	87	3890											
F10	2159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	113803258	113803258	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	F10	NM_000504	exon8	c.C894T	p.G298G	GGAGGGCGGTGAG	.	420	26	361	0	.	227	T	113803258	C	T	113803258	2	4	33	1	0	0	0	0	0	0	0	1	5336	755	27	1		1	F10	13	113803258	Silent	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	14765205	113803258	1366620	88	3891											
TEP1	7011	hgsc.bcm.edu;bcgsc.ca	37	14	20859791	20859791	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEP1	NM_007110	exon13	c.A2064G	p.A688A	CCTGTCTGCATTA	.	72	4	149	0	.	95	C	20859791	T	C	20859791	2	2	33	1	0	0	0	0	0	0	0	1	15756	1567	55	2		2	TEP1	14	20859791	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		20859791	86489749	89	3892											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24884365	24884365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.C3410T	p.A1137V	AGGAGGCCTTCCT	.	15	12	36	0	.	3	T	24884365	C	T	24884365	3	4	33	1	0	0	0	0	1	0	0	0	10796	739	26	3	3440	3	NYNRIN	14	24884365	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	4024574	24884365	82465175	90	3893											
NYNRIN	57523	hgsc.bcm.edu;bcgsc.ca	37	14	24885708	24885708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.A4753G	p.S1585G	TGCAGGAGCTGCT	.	55	4	83	0	.	3	G	24885708	A	G	24885708	3	3	33	1	0	0	0	0	1	0	0	0	10796	304	11	2	4783	2	NYNRIN	14	24885708	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	1343	24885708	82463832	91	3894											
POLE2	5427	hgsc.bcm.edu;bcgsc.ca	37	14	50118040	50118040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	POLE2	NM_001197331	exon16	c.A1267G	p.M423V	TGCACATTTTATT	.	83	4	159	0	.	229	C	50118040	T	C	50118040	3	2	33	1	0	0	0	0	1	0	0	0	12197	1493	52	2	332	2	POLE2	14	50118040	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	25232332	50118040	57231500	92	3895											
WDHD1	11169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55408242	55408242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDHD1	NM_007086	exon26	c.A3356G	p.Q1119R	AGTTTCTGATTTG	.	82	51	117	1	.	91	C	55408242	T	C	55408242	3	2	33	1	0	0	0	0	1	0	0	0	17268	1580	55	2	37	2	WDHD1	14	55408242	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	5290202	55408242	51941298	93	3896											
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64641759	64641759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE2	NM_182914	exon95	c.A17333G	p.E5778G	CTAAAGAGTCTGT	.	59	4	96	0	.	164	G	64641759	A	G	64641759	3	3	33	1	0	0	0	0	1	0	0	0	15443	304	11	2	17707	2	SYNE2	14	64641759	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	9233517	64641759	42707781	94	3897											
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68215323	68215323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZFYVE26	NM_015346	exon42	c.T7450C	p.S2484P	AGGCAGAACGCAG	.	68	4	117	0	.	162	G	68215323	A	G	68215323	3	3	33	1	0	0	0	0	1	0	0	0	17665	246	9	2	173	2	ZFYVE26	14	68215323	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	3573564	68215323	39134217	95	3898											
DLST	1743	hgsc.bcm.edu;bcgsc.ca	37	14	75365074	75365074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DLST	NM_001933	exon11	c.A773G	p.N258S	ACAGTAACATCCA	.	92	4	140	0	.	227	G	75365074	A	G	75365074	3	3	33	1	0	0	0	0	1	0	0	0	4569	43	2	2	815	2	DLST	14	75365074	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	7149751	75365074	31984466	96	3899											
EIF5	1983	hgsc.bcm.edu;bcgsc.ca	37	14	103803078	103803078	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EIF5	NM_001969	exon5	c.T219C	p.R73R	TGACCGTTACATT	.	80	4	97	0	.	155	C	103803078	T	C	103803078	2	2	33	1	0	0	0	0	0	0	0	1	5040	1712	60	2		2	EIF5	14	103803078	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	28438004	103803078	3546462	97	3900											
PPP1R13B	23368	hgsc.bcm.edu;bcgsc.ca	37	14	104206859	104206859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R13B	NM_015316	exon12	c.T1894C	p.S632P	CCGTGGACAGTGA	.	75	5	114	0	.	227	G	104206859	A	G	104206859	3	3	33	1	0	0	0	0	1	0	0	0	12357	275	10	2	1402	2	PPP1R13B	14	104206859	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	403781	104206859	3142681	98	3901											
HERC2	8924	ucsc.edu;bcgsc.ca	37	15	28427625	28427625	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HERC2	NM_004667	exon57	c.A8859G	p.S2953S	AGCTGCTGATTCC	.	44	4	64	0	.	234	C	28427625	T	C	28427625	2	2	33	1	0	0	0	0	0	0	0	1	7058	1567	55	2		2	HERC2	15	28427625	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		28427625	74103767	99	3902											
C15orf55	256646	hgsc.bcm.edu;bcgsc.ca	37	15	34646648	34646648	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C15orf55	NM_175741	exon5	c.G993A	p.V331V	CTTAGTGTACATT	.	68	4	160	0	.	206	A	34646648	G	A	34646648	2	1	33	1	0	0	0	0	0	0	0	1	1803	1391	48	3		3	C15orf55	15	34646648	Silent	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	6219023	34646648	67884744	100	3903											
DMXL2	23312	hgsc.bcm.edu;bcgsc.ca	37	15	51748508	51748508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMXL2	NM_001174116	exon37	c.A8333G	p.Y2778C	TTACAGTATTGAT	.	99	4	197	0	.	99	C	51748508	T	C	51748508	3	2	33	1	0	0	0	0	1	0	0	0	4595	1638	57	2	808	2	DMXL2	15	51748508	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	17101860	51748508	50782884	101	3904											
NEDD4	4734	hgsc.bcm.edu;bcgsc.ca	37	15	56207944	56207944	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NEDD4	NM_198400	exon1	c.A1086G	p.R362R	AGTCTGTCTGGGA	.	59	4	67	0	.	723	C	56207944	T	C	56207944	2	2	33	1	0	0	0	0	0	0	0	1	10310	1664	58	2		2	NEDD4	15	56207944	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	4459436	56207944	46323448	102	3905											
IQCH	64799	hgsc.bcm.edu;bcgsc.ca	37	15	67553702	67553702	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IQCH	NM_022784	exon2	c.A144G	p.T48T	TGAAACAGCAATC	.	57	4	81	0	.	94	G	67553702	A	G	67553702	2	3	33	1	0	0	0	0	0	0	0	1	7811	175	7	2		2	IQCH	15	67553702	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	11345758	67553702	34977690	103	3906											
SCAPER	49855	hgsc.bcm.edu;bcgsc.ca	37	15	77059425	77059425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SCAPER	NM_020843	exon10	c.T1253C	p.M418T	TCTGCCATGGACT	.	76	4	155	0	.	137	G	77059425	A	G	77059425	3	3	33	1	0	0	0	0	1	0	0	0	13878	217	8	2	3037	2	SCAPER	15	77059425	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	9505723	77059425	25471967	104	3907											
C1QTNF8	390664	hgsc.bcm.edu;bcgsc.ca	37	16	1143730	1143730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C1QTNF8	NM_207419	exon4	c.A530G	p.E177G	TAGGTCTCCTTGT	.	70	4	66	0	.	91	C	1143730	T	C	1143730	3	2	33	1	0	0	0	0	1	0	0	0	1969	1551	54	2	232	2	C1QTNF8	16	1143730	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		1143730	89211023	105	3908											
C16orf88	400506	hgsc.bcm.edu;bcgsc.ca	37	16	19725915	19725915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C16orf88	NM_001012991	exon2	c.T443C	p.L148P	TTTTTGAGCTTCT	.	68	4	95	0	.	68	G	19725915	A	G	19725915	3	3	33	1	0	0	0	0	1	0	0	0	1841	304	11	2	949	2	C16orf88	16	19725915	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	18582185	19725915	70628838	106	3909											
ARHGAP17	55114	hgsc.bcm.edu;bcgsc.ca	37	16	24958829	24958829	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP17	NM_001006634	exon14	c.T1215C	p.P405P	CAAGTTAGGGCCT	.	68	4	64	0	.	227	G	24958829	A	G	24958829	2	3	33	1	0	0	0	0	0	0	0	1	867	407	15	2		2	ARHGAP17	16	24958829	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	5232914	24958829	65395924	107	3910											
CDH16	1014	hgsc.bcm.edu;bcgsc.ca	37	16	66946026	66946026	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH16	NM_004062	exon13	c.A1566G	p.A522A	TGGAGCTGCCTCA	.	75	4	96	0	.	93	C	66946026	T	C	66946026	2	2	33	1	0	0	0	0	0	0	0	1	3101	1567	55	2		2	CDH16	16	66946026	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	41987197	66946026	23408727	108	3911											
CENPT	80152	hgsc.bcm.edu;bcgsc.ca	37	16	67864301	67864301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CENPT	NM_025082	exon11	c.A854G	p.Q285R	TTCTTCTGCAGCC	.	94	6	119	0	.	90	C	67864301	T	C	67864301	3	2	33	1	0	0	0	0	1	0	0	0	3242	1580	55	2	855	2	CENPT	16	67864301	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	918275	67864301	22490452	109	3912											
PHLPP2	23035	hgsc.bcm.edu;bcgsc.ca	37	16	71683278	71683278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PHLPP2	NM_015020	exon18	c.A3487G	p.S1163G	CCTTGCTGCCATT	.	69	4	72	0	.	91	C	71683278	T	C	71683278	3	2	33	1	0	0	0	0	1	0	0	0	11855	1580	55	2	488	2	PHLPP2	16	71683278	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	3818977	71683278	18671475	110	3913											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89341222	89341227	+	In_Frame_Del	DEL	CTGGCT	CTGGCT	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	CTGGCT	CTGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANKRD11	NM_001256183	exon11	c.7708_7713del	p.2570_2571del	CCCTACCTGGCTC	.	70	18	90	0	.	139	-	89341227	CTGGCT	-	89341222	7	5	33	1	0	1	0	1	0	0	0	0	639	695	24	0	290	0	ANKRD11	16	89341222	In_Frame_Del	DEL	CTGGCT	TCGA-CC-A3MA-01A-11D-A20W-10	17657944	89341222	1013531	111	3914											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579349	7579349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	TP53,brain,glioma,-1	TP53	NM_000546	exon4	c.T338G	p.F113C	TGCAAGAAGCCCA	.	137	84	200	0	.	70225	C	7579349	A	C	7579349	3	2	33	1	0	0	0	0	1	0	0	0	16378	246	9	5	964	5	TP53	17	7579349	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10		7579349	73615861	112	3915											
TRIM16L	147166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18638692	18638692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIM16L	NM_001037330	exon5	c.G966T	p.K322N	TTCCAAGAAGGAA	.	182	74	161	0	.	90	T	18638692	G	T	18638692	3	4	33	1	0	0	0	0	1	0	0	0	16489	933	33	3	980	3	TRIM16L	17	18638692	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	11059343	18638692	62556518	113	3916											
WSB1	26118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	25630657	25630657	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WSB1	NM_015626	exon3	c.T474A	p.Y158X	TGTATATACAGGT	.	90	34	115	0	.	226	A	25630657	T	A	25630657	4	1	33	1	0	0	0	0	0	1	0	0	17401	1413	49	4	484	4	WSB1	17	25630657	Nonsense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	6991965	25630657	55564553	114	3917											
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40343211	40343211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GHDC	NM_001142623	exon6	c.C907G	p.L303V	GCTGTAGGTTTAG	.	72	34	71	0	.	90	C	40343211	G	C	40343211	3	2	33	1	0	0	0	0	1	0	0	0	6369	991	35	4	794	4	GHDC	17	40343211	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	14712554	40343211	40851999	115	3918											
SEPT4	5414	hgsc.bcm.edu;bcgsc.ca	37	17	56603141	56603141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SEPT4	NM_001256782	exon5	c.A498G	p.G166G	AGACTCTCCTGAG	.	58	4	80	0	.	68	C	56603141	T	C	56603141	2	2	33	1	0	0	0	0	0	0	0	1	14066	1565	54	2		2	SEPT4	17	56603141	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	16259930	56603141	24592069	116	3919											
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56638968	56638968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEX14	NM_001201457	exon30	c.A4208G	p.H1403R	GTAGAGTGAGCTC	.	109	5	114	0	.	810	C	56638968	T	C	56638968	3	2	33	1	0	0	0	0	1	0	0	0	15775	1696	59	2	301	2	TEX14	17	56638968	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	35827	56638968	24556242	117	3920											
NUP85	79902	hgsc.bcm.edu;bcgsc.ca	37	17	73214301	73214301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NUP85	NM_024844	exon7	c.T497C	p.L166P	TCCATCTCCTTGA	.	110	6	115	0	.	205	C	73214301	T	C	73214301	3	2	33	1	0	0	0	0	1	0	0	0	10770	1551	54	2	523	2	NUP85	17	73214301	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	16575333	73214301	7980909	118	3921											
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74169787	74169787	+	Missense_Mutation	SNP	C	C	T	rs144334591		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RNF157	NM_052916	exon3	c.G292A	p.V98I	ACTTGACGAGCCT	.	131	62	152	0	C|1.000;T|0.000	228	T	74169787	C	T	74169787	3	4	33	1	0	0	0	0	1	0	0	0	13454	536	19	1	1815	1	RNF157	17	74169787	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	955486	74169787	7025423	119	3922											
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79414423	79414423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BAHCC1	.	.	.	.	GGCTCATTCTACT	.	50	13	95	0	.	23	A	79414423	T	A	79414423	3	1	33	1	0	0	0	0	1	0	0	0	1296	1490	52	4	3398	4	BAHCC1	17	79414423	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	5244636	79414423	1780787	120	3923											
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8376068	8376068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTPRM	NM_001105244	exon25	c.A3196G	p.I1066V	CGAGAGATCAGAC	.	67	4	68	0	.	228	G	8376068	A	G	8376068	3	3	33	1	0	0	0	0	1	0	0	0	12806	333	12	2	3294	2	PTPRM	18	8376068	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10		8376068	69701180	121	3924											
BCL2	596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60795978	60795978	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BCL2	NM_000633	exon3	c.A600G	p.E200E	GTACAGTTCCACA	.	119	42	132	0	.	1271	C	60795978	T	C	60795978	2	2	33	1	0	0	0	0	0	0	0	1	1365	1722	60	2		2	BCL2	18	60795978	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	52419910	60795978	17281270	122	3925											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9020072	9020072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MUC16	NM_024690	exon21	c.C37423T	p.R12475W	ACAGCCGCTCTCT	.	247	90	220	0	.	566	A	9020072	G	A	9020072	3	1	33	1	0	0	0	0	1	0	0	0	9973	1086	38	1	6356	1	MUC16	19	9020072	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10		9020072	50108911	123	3926											
AKAP8	10270	hgsc.bcm.edu;bcgsc.ca	37	19	15484733	15484733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP8	NM_005858	exon4	c.T235C	p.S79P	CGTAAGAGGCCAT	.	97	5	104	0	.	290	G	15484733	A	G	15484733	3	3	33	1	0	0	0	0	1	0	0	0	457	304	11	2	1887	2	AKAP8	19	15484733	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	6464661	15484733	43644250	124	3927											
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37211090	37211090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF567	NM_152603	exon4	c.G1371T	p.M457I	TAGAATGAAGTCA	.	108	32	92	0	.	90	T	37211090	G	T	37211090	3	4	33	1	0	0	0	0	1	0	0	0	17995	1290	45	3	1381	3	ZNF567	19	37211090	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	21726357	37211090	21917893	125	3928											
ZNF576	79177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44103100	44103100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF576	NM_001145347	exon3	c.G203A	p.G68E	TGCAGGGGGTCCT	.	173	80	133	0	.	90	A	44103100	G	A	44103100	3	1	33	1	0	0	0	0	1	0	0	0	18005	1232	43	3	209	3	ZNF576	19	44103100	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	6892010	44103100	15025883	126	3929											
PLEKHA4	57664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49357343	49357343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLEKHA4	NM_020904	exon11	c.C1097T	p.T366M	AGCAGCGTCTGGA	.	121	59	106	0	.	227	A	49357343	G	A	49357343	3	1	33	1	0	0	0	0	1	0	0	0	12058	1159	40	1	1282	1	PLEKHA4	19	49357343	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	5254243	49357343	9771640	127	3930											
ZNF347	84671	hgsc.bcm.edu;bcgsc.ca	37	19	53643997	53643997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF347	NM_001172675	exon5	c.A2087G	p.K696R	GCAAGCTTTGATG	.	122	6	88	0	.	90	C	53643997	T	C	53643997	3	2	33	1	0	0	0	0	1	0	0	0	17858	1609	56	2	439	2	ZNF347	19	53643997	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	4286654	53643997	5484986	128	3931											
BRSK1	84446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55816894	55816894	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BRSK1	NM_032430	exon16	c.C1830T	p.L610L	ATTCCTCGTGCTA	.	185	59	182	1	.	759	T	55816894	C	T	55816894	2	4	33	1	0	0	0	0	0	0	0	1	1523	871	31	1		1	BRSK1	19	55816894	Silent	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	2172897	55816894	3312089	129	3932											
KIF16B	55614	hgsc.bcm.edu;bcgsc.ca	37	20	16360047	16360047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIF16B	NM_001199865	exon19	c.A2600G	p.E867G	TCATGTTCACATT	.	82	4	74	0	.	291	C	16360047	T	C	16360047	3	2	33	1	0	0	0	0	1	0	0	0	8278	1783	62	2	1385	2	KIF16B	20	16360047	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		16360047	46665473	130	3933											
OVOL2	58495	hgsc.bcm.edu;bcgsc.ca	37	20	18022238	18022238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OVOL2	NM_021220	exon3	c.T451C	p.F151L	CGCAGAAGGTGCA	.	123	5	114	0	.	68	G	18022238	A	G	18022238	3	3	33	1	0	0	0	0	1	0	0	0	11327	72	3	2	384	2	OVOL2	20	18022238	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	1662191	18022238	45003282	131	3934											
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19698204	19698204	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC24A3	NM_020689	exon16	c.C1752T	p.S584S	CTACTCCGTAGGC	.	241	103	235	0	.	91	T	19698204	C	T	19698204	2	4	33	1	0	0	0	0	0	0	0	1	14467	639	23	1		1	SLC24A3	20	19698204	Silent	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10	1675966	19698204	43327316	132	3935											
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33874568	33874568	+	Missense_Mutation	SNP	G	G	A	rs138265873	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM83C	NM_178468	exon4	c.C2014T	p.R672W	TTAGCCGTTTCTC	.	206	62	222	0	G|1.000;A|0.000	92	A	33874568	G	A	33874568	3	1	33	1	0	0	0	0	1	0	0	0	5635	1144	40	1	233	1	FAM83C	20	33874568	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	14176364	33874568	29150952	133	3936											
TSHZ2	128553	hgsc.bcm.edu;bcgsc.ca	37	20	51872639	51872639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TSHZ2	NM_173485	exon2	c.A2642G	p.E881G	CACAAGAGCGTAT	.	86	4	104	0	.	232	G	51872639	A	G	51872639	3	3	33	1	0	0	0	0	1	0	0	0	16621	304	11	2	2648	2	TSHZ2	20	51872639	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	17998071	51872639	11152881	134	3937											
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15746539	15746539	+	Missense_Mutation	SNP	T	T	C	rs200321727		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HSPA13	NM_006948	exon5	c.A815G	p.Y272C	GTTTGATAGATCT	.	37	11	38	0	T|0.999;C|0.000	226	C	15746539	T	C	15746539	3	2	33	1	0	0	0	0	1	0	0	0	7406	1406	49	2	604	2	HSPA13	21	15746539	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10		15746539	32383356	135	3938											
FAM3B	54097	hgsc.bcm.edu;bcgsc.ca	37	21	42720630	42720630	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM3B	NM_058186	exon7	c.T597C	p.P199P	ACTCCCTTCCGAA	.	96	4	150	0	.	90	C	42720630	T	C	42720630	2	2	33	1	0	0	0	0	0	0	0	1	5557	1596	56	2		2	FAM3B	21	42720630	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	26974091	42720630	5409265	136	3939											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37902375	37902375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CARD10	NM_014550	exon7	c.G1207T	p.D403Y	TCCGGTCACGGCT	.	230	68	207	0	.	662	A	37902375	C	A	37902375	3	1	33	1	0	0	0	0	1	0	0	0	2644	826	29	3	1947	3	CARD10	22	37902375	Missense_Mutation	SNP	C	TCGA-CC-A3MA-01A-11D-A20W-10		37902375	13402191	137	3940											
MAGEB10	139422	hgsc.bcm.edu;bcgsc.ca	37	X	27839847	27839847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAGEB10	NM_182506	exon3	c.A424G	p.T142A	AATGTAACCCAAA	.	84	4	113	0	.	130	G	27839847	A	G	27839847	3	3	33	1	0	0	0	0	1	0	0	0	9173	43	2	2	426	2	MAGEB10	23	27839847	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10		27839847	127430713	138	3941											
USP9X	8239	hgsc.bcm.edu;bcgsc.ca	37	X	41088999	41088999	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP9X	NM_001039591	exon43	c.A7398G	p.T2466T	GATGACACTTGCA	.	108	5	79	0	.	563	G	41088999	A	G	41088999	2	3	33	1	0	0	0	0	0	0	0	1	17087	146	6	2		2	USP9X	23	41088999	Silent	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	13249152	41088999	114181561	139	3942											
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47919903	47919903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF630	NM_001037735	exon4	c.A164G	p.D55G	ATTACATCTGGTT	.	27	21	22	0	.	131	C	47919903	T	C	47919903	3	2	33	1	0	0	0	0	1	0	0	0	18051	1435	50	2	1817	2	ZNF630	23	47919903	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	6830904	47919903	107350657	140	3943											
AKAP4	8852	hgsc.bcm.edu;bcgsc.ca	37	X	49958534	49958534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP4	NM_003886	exon5	c.A830G	p.E277G	ACAGCTTCATAGG	.	65	4	46	0	.	540	C	49958534	T	C	49958534	3	2	33	1	0	0	0	0	1	0	0	0	453	1783	62	2	1742	2	AKAP4	23	49958534	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	2038631	49958534	105312026	141	3944											
FAM120C	54954	hgsc.bcm.edu;bcgsc.ca	37	X	54162988	54162988	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM120C	NM_017848	exon5	c.A1194G	p.K398K	AACTGCTTTCTTG	.	75	4	76	0	.	131	C	54162988	T	C	54162988	2	2	33	1	0	0	0	0	0	0	0	1	5418	1606	56	2		2	FAM120C	23	54162988	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	4204454	54162988	101107572	142	3945											
YIPF6	286451	hgsc.bcm.edu;bcgsc.ca	37	X	67731743	67731743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	YIPF6	NM_173834	exon2	c.A110G	p.E37G	AAGGAGAAATCAC	.	50	4	47	0	.	130	G	67731743	A	G	67731743	3	3	33	1	0	0	0	0	1	0	0	0	17479	246	9	2	116	2	YIPF6	23	67731743	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	13568755	67731743	87538817	143	3946											
STARD8	9754	hgsc.bcm.edu;bcgsc.ca	37	X	67937131	67937131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STARD8	NM_001142503	exon6	c.T375C	p.S125S	CTGGTCTCCTATG	.	78	4	96	0	.	196	C	67937131	T	C	67937131	2	2	33	1	0	0	0	0	0	0	0	1	15262	1538	54	2		2	STARD8	23	67937131	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	205388	67937131	87333429	144	3947											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909698	101909698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.G857T	p.R286M	GGTTTAGGTCTAA	.	80	66	76	0	.	131	T	101909698	G	T	101909698	3	4	33	1	0	0	0	0	1	0	0	0	6722	1000	35	3	859	3	GPRASP1	23	101909698	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	33972567	101909698	53360862	145	3948											
GPRASP1	9737	hgsc.bcm.edu;bcgsc.ca	37	X	101912553	101912553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.T3712C	p.C1238R	TACATATGTAAAG	.	76	4	57	0	.	131	C	101912553	T	C	101912553	3	2	33	1	0	0	0	0	1	0	0	0	6722	1464	51	2	3714	2	GPRASP1	23	101912553	Missense_Mutation	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	2855	101912553	53358007	146	3949											
IL1RAPL2	26280	hgsc.bcm.edu;bcgsc.ca	37	X	104478544	104478544	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IL1RAPL2	NM_017416	exon4	c.T399C	p.V133V	GACTGTTGCAGAG	.	66	4	64	0	.	194	C	104478544	T	C	104478544	2	2	33	1	0	0	0	0	0	0	0	1	7662	1799	63	2		2	IL1RAPL2	23	104478544	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	2565991	104478544	50792016	147	3950											
OCRL	4952	hgsc.bcm.edu;bcgsc.ca	37	X	128695175	128695175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OCRL	NM_000276	exon10	c.A844G	p.S282G	GACTTGAGCACAG	.	112	5	111	0	.	206	G	128695175	A	G	128695175	3	3	33	1	0	0	0	0	1	0	0	0	10823	304	11	2	882	2	OCRL	23	128695175	Missense_Mutation	SNP	A	TCGA-CC-A3MA-01A-11D-A20W-10	24216631	128695175	26575385	148	3951											
ARHGAP36	158763	hgsc.bcm.edu;bcgsc.ca	37	X	130220617	130220617	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP36	NM_144967	exon11	c.T1464C	p.A488A	CCTTGCTCAAAGC	.	78	4	61	0	.	133	C	130220617	T	C	130220617	2	2	33	1	0	0	0	0	0	0	0	1	883	1538	54	2		2	ARHGAP36	23	130220617	Silent	SNP	T	TCGA-CC-A3MA-01A-11D-A20W-10	1525442	130220617	25049943	149	3952											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905987	144905987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLITRK2	NM_001144005	exon5	c.G2044A	p.G682S	ACAGACGGCCATG	.	51	43	57	0	.	136	A	144905987	G	A	144905987	3	1	33	1	0	0	0	0	1	0	0	0	14743	1116	39	1	2046	1	SLITRK2	23	144905987	Missense_Mutation	SNP	G	TCGA-CC-A3MA-01A-11D-A20W-10	14685370	144905987	10364573	150	3953											
SLC2A7	155184	hgsc.bcm.edu;ucsc.edu	37	1	9074919	9074919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC2A7	NM_207420	exon7	c.A724G	p.R242G	TCAGCCTCCTCAG	.	37	4	17	0	.	514	C	9074919	T	C	9074919	3	2	34	1	0	0	0	0	1	0	0	0	14550	1550	54	2	838	2	SLC2A7	1	9074919	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10		9074919	240175702	1	3954											
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12403094	12403094	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS13D	NM_015378	exon42	c.A8871G	p.G2957G	AAGAGGAAAGTTA	.	62	4	61	0	.	95	G	12403094	A	G	12403094	2	3	34	1	0	0	0	0	0	0	0	1	17189	233	9	2		2	VPS13D	1	12403094	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	3328175	12403094	236847527	2	3955											
EIF4G3	8672	hgsc.bcm.edu;bcgsc.ca	37	1	21221985	21221985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EIF4G3	NM_001198802	exon15	c.A1859G	p.K620R	GTAGGCTTCCAGG	.	67	4	86	0	.	91	C	21221985	T	C	21221985	3	2	34	1	0	0	0	0	1	0	0	0	5038	1609	56	2	3000	2	EIF4G3	1	21221985	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	8818891	21221985	228028636	3	3956											
SEPN1	57190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26139198	26139198	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SEPN1	.	.	.	.	GTTCACTGAGGCC	.	94	67	126	0	.	92	A	26139198	T	A	26139198	2	1	34	1	0	0	0	0	0	0	0	1	14056	1567	55	4		4	SEPN1	1	26139198	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	4917213	26139198	223111423	4	3957											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39751339	39751339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MACF1	NM_012090	exon15	c.C1432A	p.Q478K	TACATTCAGGAGT	.	194	153	257	0	.	165	A	39751339	C	A	39751339	3	1	34	1	0	0	0	0	1	0	0	0	9144	827	29	3	1482	3	MACF1	1	39751339	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	13612141	39751339	209499282	5	3958											
ROR1	4919	hgsc.bcm.edu;bcgsc.ca	37	1	64605903	64605903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ROR1	NM_001083592	exon6	c.T722C	p.V241A	CATCCGTCCCAAA	.	116	5	162	0	.	1536	C	64605903	T	C	64605903	3	2	34	1	0	0	0	0	1	0	0	0	13526	1667	58	2	744	2	ROR1	1	64605903	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	24854564	64605903	184644718	6	3959											
C1orf173	127254	hgsc.bcm.edu;bcgsc.ca	37	1	75078418	75078418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C1orf173	NM_001002912	exon9	c.T1076C	p.V359A	CTGTTCACCTGCA	.	61	5	68	0	.	94	G	75078418	A	G	75078418	3	3	34	1	0	0	0	0	1	0	0	0	2014	159	6	2	3540	2	C1orf173	1	75078418	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	10472515	75078418	174172203	7	3960											
TYW3	127253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75199081	75199081	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TYW3	NM_001162916	exon1	c.C153T	p.G51G	CGCTGGCCGCATC	.	43	5	62	0	.	70	T	75199081	C	T	75199081	2	4	34	1	0	0	0	0	0	0	0	1	16817	726	26	3		3	TYW3	1	75199081	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	120663	75199081	174051540	8	3961											
CDC7	8317	hgsc.bcm.edu;bcgsc.ca	37	1	91978625	91978625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G583A	p.V195I	GCCTTGGTAGACT	.	73	4	166	0	.	1125	A	91978625	G	A	91978625	3	1	34	1	0	0	0	0	1	0	0	0	3084	1261	44	3	605	3	CDC7	1	91978625	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	16779544	91978625	157271996	9	3962											
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91978829	91978829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G787T	p.A263S	ACAAATGCACAAA	.	125	20	192	0	.	1125	T	91978829	G	T	91978829	3	4	34	1	0	0	0	0	1	0	0	0	3084	1319	46	3	809	3	CDC7	1	91978829	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	204	91978829	157271792	10	3963											
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	108292166	108292166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VAV3	NM_006113	exon14	c.A1310T	p.D437V	TAGTTATCACCTT	.	57	4	108	0	.	1339	A	108292166	T	A	108292166	3	1	34	1	0	0	0	0	1	0	0	0	17130	1435	50	4	1314	4	VAV3	1	108292166	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	16313337	108292166	140958455	11	3964											
AMPD2	271	hgsc.bcm.edu;bcgsc.ca	37	1	110173318	110173318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AMPD2	NM_004037	exon17	c.A2333G	p.E778G	TGATGGAGGAGTA	.	68	4	94	0	.	292	G	110173318	A	G	110173318	3	3	34	1	0	0	0	0	1	0	0	0	586	304	11	2	2440	2	AMPD2	1	110173318	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	1881152	110173318	139077303	12	3965											
GJA5	2702	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	147230516	147230516	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA5	NM_005266	exon2	c.A831G	p.G277G	GAATTTTCCCCCA	.	267	74	187	1	.	91	C	147230516	T	C	147230516	2	2	34	1	0	0	0	0	0	0	0	1	6404	1770	62	2		2	GJA5	1	147230516	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	37057198	147230516	102020105	13	3966											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	150933423	150933423	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETDB1	NM_012432	exon16	c.C2885G	p.S962X	CTCCCTCAATCCC	.	203	14	139	0	.	228	G	150933423	C	G	150933423	4	3	34	1	0	0	0	0	0	1	0	0	14138	838	29	4	2943	4	SETDB1	1	150933423	Nonsense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	3702907	150933423	98317198	14	3967											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156108485	156108485	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LMNA	NM_170707	exon11	c.C1905T	p.G635G	GGGTGGCAGCTTC	.	242	50	191	0	.	228	T	156108485	C	T	156108485	2	4	34	1	0	0	0	0	0	0	0	1	8848	697	25	3		3	LMNA	1	156108485	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	5175062	156108485	93142136	15	3968											
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca	37	1	158646052	158646052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTA1	NM_003126	exon8	c.A991G	p.T331A	AAAGTGTCAGCTT	.	148	6	128	0	.	142	C	158646052	T	C	158646052	3	2	34	1	0	0	0	0	1	0	0	0	15115	1667	58	2	6448	2	SPTA1	1	158646052	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	2537567	158646052	90604569	16	3969											
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171236701	171236701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FMO1	NM_002021	exon3	c.G152A	p.R51K	AAGGCAGAGCCAG	.	191	46	124	0	.	515	A	171236701	G	A	171236701	3	1	34	1	0	0	0	0	1	0	0	0	5954	942	33	3	158	3	FMO1	1	171236701	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	12590649	171236701	78013920	17	3970											
TNN	63923	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	175067580	175067580	+	Silent	SNP	T	T	G	rs61747978	byfrequency;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TNN	NM_022093	exon9	c.T1968G	p.S656S	CACCTCTGCTGGT	.	656	57	277	0	T|0.981;C|0.019	138	G	175067580	T	G	175067580	2	3	34	1	0	0	0	0	0	0	0	1	16320	1567	55	5		5	TNN	1	175067580	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	3830879	175067580	74183041	18	3971											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177247856	177247856	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM5B	NM_021165	exon7	c.A1170T	p.L390L	GATCCTACGCCGG	.	116	49	117	0	.	28	T	177247856	A	T	177247856	2	4	34	1	0	0	0	0	0	0	0	1	5593	378	14	4		4	FAM5B	1	177247856	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	2180276	177247856	72002765	19	3972											
QSOX1	5768	hgsc.bcm.edu;bcgsc.ca	37	1	180163522	180163522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	QSOX1	NM_002826	exon11	c.T1463C	p.L488P	CTCGCCTTGCAGG	.	98	5	130	0	.	91	C	180163522	T	C	180163522	3	2	34	1	0	0	0	0	1	0	0	0	12883	1609	56	2	1505	2	QSOX1	1	180163522	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	2915666	180163522	69087099	20	3973											
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	1	186340129	186340129	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TPR	NM_003292	exon3	c.T303C	p.I101I	CTGAGCAATTTCA	.	84	4	102	0	.	228	G	186340129	A	G	186340129	2	3	34	1	0	0	0	0	0	0	0	1	16413	126	5	2		2	TPR	1	186340129	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	6176607	186340129	62910492	21	3974											
NR5A2	2494	hgsc.bcm.edu;bcgsc.ca	37	1	199997033	199997033	+	Missense_Mutation	SNP	C	C	T	rs142187332		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NR5A2	NM_003822	exon1	c.A58T	p.M20L	CTTACACCTATTG	.	71	4	56	0	C|1.000;T|0.000	227	T	199997033	C	T	199997033	3	4	34	1	0	0	0	0	1	0	0	0	10636	507	18	3	60	3	NR5A2	1	199997033	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	13656904	199997033	49253588	22	3975											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207679429	207679429	+	Splice_Site	SNP	G	G	A	rs199647026		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CR1	NM_000573	exon2	c.301+1G>A	.	GCAGACGTAAGTA	.	117	30	139	0	.	93	A	207679429	G	A	207679429	5	1	34	1	0	0	0	0	0	0	1	0	3840	1159	40	1	308	1	CR1	1	207679429	Splice_Site	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	7682396	207679429	41571192	23	3976											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373462	216373462	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USH2A	NM_007123	exon17	c.T3318C	p.S1106S	TTGAATACCTGAA	.	17	10	41	0	.	115	G	216373462	A	G	216373462	2	3	34	1	0	0	0	0	0	0	0	1	17033	405	14	2		2	USH2A	1	216373462	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	8694033	216373462	32877159	24	3977											
EPHX1	2052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226030103	226030103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPHX1	NM_001136018	exon7	c.C968A	p.A323D	TGGCTGCCTATAT	.	111	53	85	0	.	281	A	226030103	C	A	226030103	3	1	34	1	0	0	0	0	1	0	0	0	5179	739	26	3	990	3	EPHX1	1	226030103	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	9656641	226030103	23220518	25	3978											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240072218	240072218	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHRM3	NM_000740	exon5	c.G1467A	p.A489A	GAAAGCGGCCCAG	.	147	36	148	0	.	95	A	240072218	G	A	240072218	2	1	34	1	0	0	0	0	0	0	0	1	3378	1103	39	1		1	CHRM3	1	240072218	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	14042115	240072218	9178403	26	3979											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	9533657	9533657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASAP2	NM_003887	exon24	c.C2565A	p.S855R	GCCCAGCGTAATG	.	80	12	71	0	.	90	A	9533657	C	A	9533657	3	1	34	1	0	0	0	0	1	0	0	0	1011	767	27	1	2659	1	ASAP2	2	9533657	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10		9533657	233665716	27	3980											
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60687558	60687558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL11A	NM_022893	exon4	c.A2489C	p.N830T	ATATCATTATTCA	.	50	31	84	0	.	1149	G	60687558	T	G	60687558	3	3	34	1	0	0	0	0	1	0	0	0	1363	1493	52	5	128	5	BCL11A	2	60687558	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	51153901	60687558	182511815	28	3981											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61571021	61571021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USP34	NM_014709	exon16	c.C2429A	p.A810E	AGTTCCGCATGTG	.	173	112	196	0	.	579	T	61571021	G	T	61571021	3	4	34	1	0	0	0	0	1	0	0	0	17062	1087	38	1	8471	1	USP34	2	61571021	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	883463	61571021	181628352	29	3982											
ETAA1	54465	hgsc.bcm.edu;bcgsc.ca	37	2	67632242	67632242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ETAA1	NM_019002	exon5	c.A2428G	p.S810G	GCTCAGAGCAACC	.	73	5	77	0	.	156	G	67632242	A	G	67632242	3	3	34	1	0	0	0	0	1	0	0	0	5267	304	11	2	2446	2	ETAA1	2	67632242	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	6061221	67632242	175567131	30	3983											
EXOC6B	23233	hgsc.bcm.edu;bcgsc.ca	37	2	72707813	72707813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EXOC6B	NM_015189	exon17	c.A1732G	p.T578A	TGTTGGTGATAAA	.	76	4	111	0	.	68	C	72707813	T	C	72707813	3	2	34	1	0	0	0	0	1	0	0	0	5309	1696	59	2	727	2	EXOC6B	2	72707813	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	5075571	72707813	170491560	31	3984											
DNAH6	1768	hgsc.bcm.edu;bcgsc.ca	37	2	84924794	84924794	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH6	NM_001370	exon47	c.A7620G	p.L2540L	GGTTTTAGCGGCC	.	64	4	83	0	.	69	G	84924794	A	G	84924794	2	3	34	1	0	0	0	0	0	0	0	1	4605	417	15	2		2	DNAH6	2	84924794	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	12216981	84924794	158274579	32	3985											
FER1L5	90342	hgsc.bcm.edu;bcgsc.ca	37	2	97365352	97365352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FER1L5	NM_001113382	exon42	c.A4757G	p.D1586G	ACTTCGACCTATT	.	106	5	105	0	.	23	G	97365352	A	G	97365352	3	3	34	1	0	0	0	0	1	0	0	0	5814	275	10	2	4923	2	FER1L5	2	97365352	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	12440558	97365352	145834021	33	3986											
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116593811	116593811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DPP10	NM_001178034	exon22	c.A2041C	p.I681L	GCACCTATCACAG	.	118	17	142	0	.	142	C	116593811	A	C	116593811	3	2	34	1	0	0	0	0	1	0	0	0	4727	449	16	5	2286	5	DPP10	2	116593811	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	19228459	116593811	126605562	34	3987											
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125192079	125192079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTNAP5	NM_130773	exon5	c.T548G	p.F183C	CTGACTTTGATGG	.	185	86	232	0	.	524	G	125192079	T	G	125192079	3	3	34	1	0	0	0	0	1	0	0	0	3650	1841	64	5	566	5	CNTNAP5	2	125192079	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	8598268	125192079	118007294	35	3988											
BAZ2B	29994	broad.mit.edu;mdanderson.org	37	2	160295184	160295184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BAZ2B	NM_013450	exon8	c.A923G	p.D308G	TTTGGGTCTGAAA	.	18	3	25	0	.	94	C	160295184	T	C	160295184	3	2	34	1	0	0	0	0	1	0	0	0	1332	1667	58	2	5703	2	BAZ2B	2	160295184	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	35103105	160295184	82904189	36	3989											
BBS5	129880	hgsc.bcm.edu;bcgsc.ca	37	2	170343593	170343593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BBS5	NM_152384	exon3	c.A157G	p.T53A	TTGGTAACAAATT	.	83	4	87	0	.	90	G	170343593	A	G	170343593	3	3	34	1	0	0	0	0	1	0	0	0	1340	43	2	2	167	2	BBS5	2	170343593	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	10048409	170343593	72855780	37	3990											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179648880	179648880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon16	c.G2692A	p.V898M	TTTTCACCTCAAC	.	259	12	256	0	.	636	T	179648880	C	T	179648880	3	4	34	1	0	0	0	0	1	0	0	0	16732	507	18	3	108684	3	TTN	2	179648880	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	9305287	179648880	63550493	38	3991											
PSMD1	5707	hgsc.bcm.edu;bcgsc.ca	37	2	232028362	232028362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMD1	NM_002807	exon21	c.A2402G	p.Q801R	AAGTTCAGTATAA	.	75	4	80	0	.	92	G	232028362	A	G	232028362	3	3	34	1	0	0	0	0	1	0	0	0	12692	188	7	2	2484	2	PSMD1	2	232028362	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	52379482	232028362	11171011	39	3992											
ZNF860	344787	hgsc.bcm.edu;bcgsc.ca	37	3	32030646	32030646	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF860	NM_001137674	exon2	c.T75C	p.T25T	CTTGACTTTTAGG	.	72	4	135	0	.	1	C	32030646	T	C	32030646	2	2	34	1	0	0	0	0	0	0	0	1	18191	1596	56	2		2	ZNF860	3	32030646	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10		32030646	165991784	40	3993											
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39226588	39226588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	XIRP1	NM_194293	exon2	c.T4349C	p.M1450T	CCTTCCATGGGCT	.	49	14	64	0	.	158	G	39226588	A	G	39226588	3	3	34	1	0	0	0	0	1	0	0	0	17426	217	8	2	1186	2	XIRP1	3	39226588	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	7195942	39226588	158795842	41	3994											
TRAK1	22906	broad.mit.edu;bcgsc.ca	37	3	42234621	42234660	+	Frame_Shift_Del	DEL	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TRAK1	NM_001265608	exon8	c.824_863del	p.275_288del	AGACGGAAGATGC	.	84	4	164	0	.	91	-	42234660	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	-	42234621	7	5	34	1	0	1	0	1	0	0	0	0	16446	246	9	0	970	0	TRAK1	3	42234621	Frame_Shift_Del	DEL	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	TCGA-CC-A3MB-01A-11D-A20W-10	3008033	42234621	155787809	42	3995											
CCK	885	hgsc.bcm.edu;bcgsc.ca	37	3	42305118	42305118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCK	NM_000729	exon4	c.A5G	p.N2S	CCGCTGTTCATGG	.	51	4	52	0	.	514	C	42305118	T	C	42305118	3	2	34	1	0	0	0	0	1	0	0	0	2879	1725	60	2	350	2	CCK	3	42305118	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	70497	42305118	155717312	43	3996											
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45153758	45153758	+	Missense_Mutation	SNP	C	C	G	rs149422328	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDCP1	NM_178181	exon3	c.G472C	p.G158R	TGACTCCGTCTGG	.	60	28	94	0	C|1.000;T|0.000	117	G	45153758	C	G	45153758	3	3	34	1	0	0	0	0	1	0	0	0	3093	661	23	4	2074	4	CDCP1	3	45153758	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	2848640	45153758	152868672	44	3997											
SHISA5	51246	hgsc.bcm.edu;bcgsc.ca	37	3	48510952	48510952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHISA5	NM_016479	exon5	c.T451C	p.S151P	TGGTGGATGTGGT	.	91	5	114	0	.	68	G	48510952	A	G	48510952	3	3	34	1	0	0	0	0	1	0	0	0	14283	333	12	2	279	2	SHISA5	3	48510952	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	3357194	48510952	149511478	45	3998											
SFMBT1	51460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52962211	52962211	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SFMBT1	NM_016329	exon9	c.T1044G	p.P348P	ACCTGGAGGGGGG	.	28	12	48	0	.	91	C	52962211	A	C	52962211	2	2	34	1	0	0	0	0	0	0	0	1	14157	291	11	5		5	SFMBT1	3	52962211	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	4451259	52962211	145060219	46	3999											
PTPRG	5793	hgsc.bcm.edu;bcgsc.ca	37	3	62180755	62180755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRG	NM_002841	exon10	c.T1238C	p.V413A	GCCATGTCTCACC	.	80	6	131	0	.	419	C	62180755	T	C	62180755	3	2	34	1	0	0	0	0	1	0	0	0	12802	1667	58	2	1276	2	PTPRG	3	62180755	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	9218544	62180755	135841675	47	4000											
STXBP5L	9515	hgsc.bcm.edu;bcgsc.ca	37	3	120941989	120941989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STXBP5L	NM_014980	exon11	c.A1096G	p.T366A	TGTGAAACGCCCT	.	60	4	72	0	.	77	G	120941989	A	G	120941989	3	3	34	1	0	0	0	0	1	0	0	0	15356	43	2	2	1134	2	STXBP5L	3	120941989	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	58761234	120941989	77080441	48	4001											
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126229602	126229602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UROC1	NM_001165974	exon2	c.G162A	p.P54P	GACATCCGGGGGG	.	45	9	39	0	.	91	T	126229602	C	T	126229602	2	4	34	1	0	0	0	0	0	0	0	1	17025	639	23	1		1	UROC1	3	126229602	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	5287613	126229602	71792828	49	4002											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130098302	130098302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_153264	exon4	c.C709A	p.L237I	GCTGACCTCGTGT	.	201	90	163	0	.	.	A	130098302	C	A	130098302	3	1	34	1	0	0	0	0	1	0	0	0	3702	681	24	3	719	3	COL6A5	3	130098302	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	3868700	130098302	67924128	50	4003											
CCDC39	339829	hgsc.bcm.edu;bcgsc.ca	37	3	180361933	180361933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC39	NM_181426	exon12	c.T1640C	p.L547P	TTATCAAGTTCTT	.	81	5	97	0	.	72	G	180361933	A	G	180361933	3	3	34	1	0	0	0	0	1	0	0	0	2811	72	3	2	1221	2	CCDC39	3	180361933	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	50263631	180361933	17660497	51	4004											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183655819	183655819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABCC5	NM_005688	exon26	c.C3724T	p.R1242C	CCAGACGGAAGAG	.	124	27	126	0	.	137	A	183655819	G	A	183655819	3	1	34	1	0	0	0	0	1	0	0	0	56	1116	39	1	609	1	ABCC5	3	183655819	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	3293886	183655819	14366611	52	4005											
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6377634	6377634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP2R2C	NM_181876	exon4	c.T359A	p.I120N	TCGGTAATCTTCC	.	190	92	208	0	.	1084	T	6377634	A	T	6377634	3	4	34	1	0	0	0	0	1	0	0	0	12386	101	4	4	1008	4	PPP2R2C	4	6377634	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		6377634	184776642	53	4006											
PPARGC1A	10891	hgsc.bcm.edu;bcgsc.ca	37	4	23816124	23816124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPARGC1A	NM_013261	exon8	c.T982C	p.S328P	TCTTTGATGGTGG	.	79	4	100	0	.	230	G	23816124	A	G	23816124	3	3	34	1	0	0	0	0	1	0	0	0	12300	333	12	2	1438	2	PPARGC1A	4	23816124	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	17438490	23816124	167338152	54	4007											
ARAP2	116984	hgsc.bcm.edu;bcgsc.ca	37	4	36069848	36069848	+	Missense_Mutation	SNP	T	T	C	rs202134005	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP2	NM_015230	exon33	c.A4796G	p.E1599G	ACGGACTCTTTAT	.	57	4	59	0	T|0.999;A|0.001	93	C	36069848	T	C	36069848	3	2	34	1	0	0	0	0	1	0	0	0	839	1551	54	2	322	2	ARAP2	4	36069848	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	12253724	36069848	155084428	55	4008											
SDAD1	55153	hgsc.bcm.edu;bcgsc.ca	37	4	76882410	76882410	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SDAD1	NM_018115	exon15	c.A1233G	p.E411E	AAGTTCTTCAGTC	.	87	4	142	0	.	91	C	76882410	T	C	76882410	2	2	34	1	0	0	0	0	0	0	0	1	13950	1606	56	2		2	SDAD1	4	76882410	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	40812562	76882410	114271866	56	4009											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	79204044	79204044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRAS1	NM_001166133	exon12	c.A1178G	p.E393G	GCTACGAGCCCTC	.	97	6	131	0	.	68	G	79204044	A	G	79204044	3	3	34	1	0	0	0	0	1	0	0	0	6042	304	11	2	1224	2	FRAS1	4	79204044	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	2321634	79204044	111950232	57	4010											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88052964	88052964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AFF1	NM_001166693	exon18	c.T3121A	p.S1041T	TTAAAATCCTTCT	.	104	19	181	0	.	289	A	88052964	T	A	88052964	3	1	34	1	0	0	0	0	1	0	0	0	356	1435	50	4	3208	4	AFF1	4	88052964	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	8848920	88052964	103101312	58	4011											
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141484605	141484605	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UCP1	NM_021833	exon3	c.G393A	p.G131G	GGGTTGCCCAATG	.	72	32	110	0	.	91	T	141484605	C	T	141484605	2	4	34	1	0	0	0	0	0	0	0	1	16927	726	26	3		3	UCP1	4	141484605	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	53431641	141484605	49669671	59	4012											
POU4F2	5458	hgsc.bcm.edu;bcgsc.ca	37	4	147561644	147561644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	POU4F2	NM_004575	exon2	c.T914C	p.L305P	AGTCCCTCACACT	.	51	4	76	0	.	135	C	147561644	T	C	147561644	3	2	34	1	0	0	0	0	1	0	0	0	12279	1551	54	2	920	2	POU4F2	4	147561644	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	6077039	147561644	43592632	60	4013											
DCHS2	54798	hgsc.bcm.edu;bcgsc.ca	37	4	155278418	155278418	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DCHS2	NM_017639	exon6	c.A753G	p.E251E	CATTACTTCCTTG	.	33	4	42	0	.	94	C	155278418	T	C	155278418	2	2	34	1	0	0	0	0	0	0	0	1	4288	1606	56	2		2	DCHS2	4	155278418	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	7716774	155278418	35875858	61	4014											
DDX60L	91351	hgsc.bcm.edu;bcgsc.ca	37	4	169282339	169282339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon37	c.A4952G	p.K1651R	AAACACTTTAAAA	.	94	4	113	0	.	69	C	169282339	T	C	169282339	3	2	34	1	0	0	0	0	1	0	0	0	4379	1609	56	2	176	2	DDX60L	4	169282339	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	14003921	169282339	21871937	62	4015											
DDX60L	91351	hgsc.bcm.edu;bcgsc.ca	37	4	169317190	169317190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon27	c.A3577G	p.K1193E	GAATCTTCAGATT	.	146	6	207	0	.	69	C	169317190	T	C	169317190	3	2	34	1	0	0	0	0	1	0	0	0	4379	1792	62	2	1591	2	DDX60L	4	169317190	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	34851	169317190	21837086	63	4016											
FAM149A	25854	hgsc.bcm.edu;bcgsc.ca	37	4	187077241	187077241	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM149A	NM_001006655	exon6	c.T471C	p.C157C	TGACTGTGTCAAA	.	71	4	108	0	.	90	C	187077241	T	C	187077241	2	2	34	1	0	0	0	0	0	0	0	1	5455	1702	59	2		2	FAM149A	4	187077241	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	17760051	187077241	4077035	64	4017											
KLKB1	3818	hgsc.bcm.edu;bcgsc.ca	37	4	187175807	187175807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLKB1	NM_000892	exon12	c.A1379G	p.D460G	CAAAAGATACACC	.	79	4	136	0	.	227	G	187175807	A	G	187175807	3	3	34	1	0	0	0	0	1	0	0	0	8412	333	12	2	1421	2	KLKB1	4	187175807	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	98566	187175807	3978469	65	4018											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26906841	26906841	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH9	NM_016279	exon4	c.G630T	p.V210V	TGGGTCCACTGAA	.	73	20	87	0	.	99	A	26906841	C	A	26906841	2	1	34	1	0	0	0	0	0	0	0	1	3117	581	21	3		3	CDH9	5	26906841	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10		26906841	154008419	66	4019											
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38958582	38958582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RICTOR	NM_152756	exon24	c.T2383A	p.S795T	GGTGGGATAACGC	.	217	93	220	0	.	849	T	38958582	A	T	38958582	3	4	34	1	0	0	0	0	1	0	0	0	13358	333	12	4	2803	4	RICTOR	5	38958582	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	12051741	38958582	141956678	67	4020											
OXCT1	5019	hgsc.bcm.edu;bcgsc.ca	37	5	41794835	41794835	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OXCT1	NM_000436	exon12	c.T1116C	p.T372T	AAGAATAGTAACT	.	66	4	46	0	.	133	G	41794835	A	G	41794835	2	3	34	1	0	0	0	0	0	0	0	1	11329	407	15	2		2	OXCT1	5	41794835	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	2836253	41794835	139120425	68	4021											
ACOT12	134526	hgsc.bcm.edu;bcgsc.ca	37	5	80655835	80655835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACOT12	NM_130767	exon5	c.T383C	p.L128P	GTTAGAAGTGTGA	.	83	4	73	0	.	92	G	80655835	A	G	80655835	3	3	34	1	0	0	0	0	1	0	0	0	150	72	3	2	1328	2	ACOT12	5	80655835	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	38861000	80655835	100259425	69	4022											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	101755554	101755554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO6A1	NM_173488	exon8	c.C1448T	p.A483V	ATCCCAGCAAATT	.	195	13	243	0	.	96	A	101755554	G	A	101755554	3	1	34	1	0	0	0	0	1	0	0	0	14732	971	34	3	735	3	SLCO6A1	5	101755554	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	21099719	101755554	79159706	70	4023											
PPIP5K2	23262	hgsc.bcm.edu;bcgsc.ca	37	5	102490644	102490644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPIP5K2	NM_015216	exon12	c.A1400G	p.E467G	TATTAGAGATGTG	.	55	4	68	0	.	92	G	102490644	A	G	102490644	3	3	34	1	0	0	0	0	1	0	0	0	12333	304	11	2	1446	2	PPIP5K2	5	102490644	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	735090	102490644	78424616	71	4024											
EFNA5	1946	hgsc.bcm.edu;broad.mit.edu	37	5	106763128	106763128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EFNA5	NM_001962	exon2	c.C208A	p.P70T	CTTCTGGGACGGA	.	97	4	123	0	.	90	T	106763128	G	T	106763128	3	4	34	1	0	0	0	0	1	0	0	0	4954	1232	43	3	494	3	EFNA5	5	106763128	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	4272484	106763128	74152132	72	4025											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu	37	5	140605206	140605206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHB14	NM_018934	exon1	c.C2129T	p.A710V	TCGTGGCGGTGCG	.	57	4	34	0	.	91	T	140605206	C	T	140605206	3	4	34	1	0	0	0	0	1	0	0	0	11539	768	27	1	2131	1	PCDHB14	5	140605206	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	33842078	140605206	40310054	73	4026											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141059772	141059772	+	Silent	SNP	G	G	A	rs146312944		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP3	NM_022481	exon2	c.C282T	p.P94P	CGGCACGGGCTTA	.	134	66	150	0	G|1.000;A|0.000	291	A	141059772	G	A	141059772	2	1	34	1	0	0	0	0	0	0	0	1	840	1103	39	1		1	ARAP3	5	141059772	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	454566	141059772	39855488	74	4027											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150945475	150945475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAT2	NM_001447	exon1	c.G3018T	p.R1006S	TAGGGGCCTCCCA	.	154	9	128	0	.	96	A	150945475	C	A	150945475	3	1	34	1	0	0	0	0	1	0	0	0	5690	738	26	3	10123	3	FAT2	5	150945475	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	9885703	150945475	29969785	75	4028											
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	155935693	155935693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_000337	exon4	c.A275T	p.K92I	ACGCCAAAGAAAT	.	63	32	70	0	.	.	T	155935693	A	T	155935693	3	4	34	1	0	0	0	0	1	0	0	0	14201	14	1	4	285	4	SGCD	5	155935693	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	4990218	155935693	24979567	76	4029											
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156755023	156755023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CYFIP2	NM_001037332	exon19	c.C2122G	p.Q708E	GCAGACCAGATCT	.	108	21	115	0	.	22	G	156755023	C	G	156755023	3	3	34	1	0	0	0	0	1	0	0	0	4138	595	21	4	2192	4	CYFIP2	5	156755023	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	819330	156755023	24160237	77	4030											
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	162911119	162911119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HMMR	NM_001142556	exon16	c.T1830G	p.N610K	GTTGAATGAACAT	.	133	9	127	0	.	90	G	162911119	T	G	162911119	3	3	34	1	0	0	0	0	1	0	0	0	7242	1461	51	5	1892	5	HMMR	5	162911119	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	6156096	162911119	18004141	78	4031											
RANBP9	10048	ucsc.edu;bcgsc.ca	37	6	13642747	13642747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RANBP9	NM_005493	exon7	c.G1189A	p.V397I	CTAGAACGGTCTG	.	43	4	30	0	.	414	T	13642747	C	T	13642747	3	4	34	1	0	0	0	0	1	0	0	0	13032	536	19	1	1032	1	RANBP9	6	13642747	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10		13642747	157472320	79	4032											
KIF13A	63971	hgsc.bcm.edu;bcgsc.ca	37	6	17834225	17834225	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF13A	NM_001105567	exon12	c.A1233G	p.E411E	CTTCTCTTCCCAA	.	125	5	115	0	.	137	C	17834225	T	C	17834225	2	2	34	1	0	0	0	0	0	0	0	1	8274	1606	56	2		2	KIF13A	6	17834225	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	4191478	17834225	153280842	80	4033											
HIST1H1E	3008	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26156843	26156843	+	Missense_Mutation	SNP	G	G	T	rs150948103	byfrequency;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HIST1H1E	NM_005321	exon1	c.G225T	p.K75N	GGAGAAGAACAAC	.	118	28	129	0	G|0.994;A|0.006	154	T	26156843	G	T	26156843	3	4	34	1	0	0	0	0	1	0	0	0	7126	933	33	3	227	3	HIST1H1E	6	26156843	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	8322618	26156843	144958224	81	4034											
FAM83B	222584	hgsc.bcm.edu;bcgsc.ca	37	6	54805894	54805894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM83B	NM_001010872	exon5	c.A2125G	p.S709G	TCTAAAAGCATGC	.	78	4	72	0	.	96	G	54805894	A	G	54805894	3	3	34	1	0	0	0	0	1	0	0	0	5634	72	3	2	2139	2	FAM83B	6	54805894	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	28649051	54805894	116309173	82	4035											
DST	667	bcgsc.ca;mdanderson.org	37	6	56418422	56418422	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DST	NM_015548	exon42	c.T7299C	p.C2433C	GCTTGCACAGGCC	.	21	3	30	0	.	523	G	56418422	A	G	56418422	2	3	34	1	0	0	0	0	0	0	0	1	4783	157	6	2		2	DST	6	56418422	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	1612528	56418422	114696645	83	4036											
PGM3	5238	hgsc.bcm.edu;bcgsc.ca	37	6	83889643	83889643	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PGM3	NM_001199917	exon8	c.A915G	p.G305G	TGCATCTCCATCA	.	108	5	116	0	.	90	C	83889643	T	C	83889643	2	2	34	1	0	0	0	0	0	0	0	1	11800	1538	54	2		2	PGM3	6	83889643	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	27471221	83889643	87225424	84	4037											
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90428856	90428856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MDN1	NM_014611	exon41	c.A6056G	p.Q2019R	CTTACCTGAACAT	.	57	4	60	0	.	100	C	90428856	T	C	90428856	3	2	34	1	0	0	0	0	1	0	0	0	9415	1594	55	2	10982	2	MDN1	6	90428856	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	6539213	90428856	80686211	85	4038											
ASCC3	10973	hgsc.bcm.edu;bcgsc.ca	37	6	101109765	101109765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASCC3	NM_006828	exon16	c.A2620G	p.S874G	AATGGCTGAGTTT	.	110	5	108	0	.	96	C	101109765	T	C	101109765	3	2	34	1	0	0	0	0	1	0	0	0	1033	1580	55	2	4096	2	ASCC3	6	101109765	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	10680909	101109765	70005302	86	4039											
FRK	2444	hgsc.bcm.edu;bcgsc.ca	37	6	116263618	116263618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRK	NM_002031	exon8	c.A1477G	p.T493A	AGTCTGTTTCAAA	.	102	5	143	0	.	948	C	116263618	T	C	116263618	3	2	34	1	0	0	0	0	1	0	0	0	6048	1725	60	2	44	2	FRK	6	116263618	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	15153853	116263618	54851449	87	4040											
GJA1	2697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	121768871	121768871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA1	NM_000165	exon2	c.G878A	p.R293K	GCGACAGAAACAA	.	50	6	85	0	.	92	A	121768871	G	A	121768871	3	1	34	1	0	0	0	0	1	0	0	0	6400	942	33	3	880	3	GJA1	6	121768871	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	5505253	121768871	49346196	88	4041											
CENPW	387103	hgsc.bcm.edu;bcgsc.ca	37	6	126661441	126661441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CENPW	NM_001012507	exon1	c.T22C	p.S8P	ATAGTCTCCCAGA	.	68	4	66	0	.	90	C	126661441	T	C	126661441	3	2	34	1	0	0	0	0	1	0	0	0	3244	1551	54	2	24	2	CENPW	6	126661441	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	4892570	126661441	44453626	89	4042											
PTPRK	5796	hgsc.bcm.edu;bcgsc.ca	37	6	128388889	128388889	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRK	NM_001135648	exon12	c.A1932G	p.R644R	GGCTTCTCTCTTG	.	83	4	97	0	.	231	C	128388889	T	C	128388889	2	2	34	1	0	0	0	0	0	0	0	1	12805	1548	54	2		2	PTPRK	6	128388889	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	1727448	128388889	42726178	90	4043											
SHPRH	257218	hgsc.bcm.edu;bcgsc.ca	37	6	146243946	146243946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHPRH	NM_173082	exon19	c.T3584C	p.F1195S	AGTAAGAACTGAA	.	78	4	91	0	.	92	G	146243946	A	G	146243946	3	3	34	1	0	0	0	0	1	0	0	0	14291	246	9	2	1544	2	SHPRH	6	146243946	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	17855057	146243946	24871121	91	4044											
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	150001056	150001058	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LATS1	NM_004690	exon5	c.2546_2548del	p.849_850del	CAGTGCAGAGGCC	.	152	116	208	0	.	992	-	150001058	AGA	-	150001056	7	5	34	1	0	1	0	1	0	0	0	0	8646	188	7	0	860	0	LATS1	6	150001056	In_Frame_Del	DEL	AGA	TCGA-CC-A3MB-01A-11D-A20W-10	3757110	150001056	21114011	92	4045											
ESR1	2099	hgsc.bcm.edu;bcgsc.ca	37	6	152265434	152265434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ESR1	NM_000125	exon4	c.T887C	p.L296P	GCCCGCTCATGAT	.	109	5	99	0	.	1042	C	152265434	T	C	152265434	3	2	34	1	0	0	0	0	1	0	0	0	5256	1551	54	2	901	2	ESR1	6	152265434	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	2264378	152265434	18849633	93	4046											
MTRF1L	54516	hgsc.bcm.edu;bcgsc.ca	37	6	153313995	153313995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MTRF1L	NM_019041	exon5	c.A802G	p.T268A	CACCTGTTGGAAG	.	63	4	42	0	.	90	C	153313995	T	C	153313995	3	2	34	1	0	0	0	0	1	0	0	0	9960	1725	60	2	352	2	MTRF1L	6	153313995	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	1048561	153313995	17801072	94	4047											
AGPAT4	56895	hgsc.bcm.edu;bcgsc.ca	37	6	161567572	161567572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT4	NM_020133	exon7	c.A827G	p.K276R	TAGAGCTTGTGCA	.	64	4	68	0	.	90	C	161567572	T	C	161567572	3	2	34	1	0	0	0	0	1	0	0	0	389	1609	56	2	321	2	AGPAT4	6	161567572	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	8253577	161567572	9547495	95	4048											
PDE10A	10846	hgsc.bcm.edu;bcgsc.ca	37	6	165863852	165863852	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE10A	NM_001130690	exon5	c.226-2A>G	.	TGGTACTTTGGAT	.	84	5	100	0	.	519	C	165863852	T	C	165863852	5	2	34	1	0	0	0	0	0	0	1	0	11630	1623	56	2	2221	2	PDE10A	6	165863852	Splice_Site	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	4296280	165863852	5251215	96	4049											
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	8198174	8198175	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	p.HM229QV	CTAGCATGTGAGA	.	108	46	134	0	.	.	CT	8198175	TG	CT	8198174	3	2	34	1	0	0	0	0	1	0	0	0	7477	1464	51	2	795	2	ICA1	7	8198174	Missense_Mutation	DNP	TG	TCGA-CC-A3MB-01A-11D-A20W-10		8198174	150940489	97	4050											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu	37	7	47849144	47849144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKD1L1	NM_138295	exon51	c.T7613C	p.L2538P	ACACAGAGGTGGA	.	45	5	45	0	.	145	G	47849144	A	G	47849144	3	3	34	1	0	0	0	0	1	0	0	0	11964	304	11	2	964	2	PKD1L1	7	47849144	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	39650970	47849144	111289519	98	4051											
KRIT1	889	hgsc.bcm.edu;bcgsc.ca	37	7	91851228	91851228	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRIT1	NM_194456	exon15	c.A1551G	p.E517E	TTCAACTTCCAAG	.	73	4	50	0	.	132	C	91851228	T	C	91851228	2	2	34	1	0	0	0	0	0	0	0	1	8445	1606	56	2		2	KRIT1	7	91851228	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	44002084	91851228	67287435	99	4052											
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92028083	92028083	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANKIB1	NM_019004	exon20	c.T3090C	p.S1030S	TGTCAGTGAAGGT	.	129	51	103	0	.	432	C	92028083	T	C	92028083	2	2	34	1	0	0	0	0	0	0	0	1	630	1693	59	2		2	ANKIB1	7	92028083	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	176855	92028083	67110580	100	4053											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	104746372	104746372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MLL5	NM_018682	exon18	c.C2518T	p.Q840X	CCCTGTCAAGAAA	.	152	24	154	0	.	93	T	104746372	C	T	104746372	4	4	34	1	0	0	0	0	0	1	0	0	9624	827	29	3	2584	3	MLL5	7	104746372	Nonsense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	12718289	104746372	54392291	101	4054											
DUS4L	11062	hgsc.bcm.edu;bcgsc.ca	37	7	107216859	107216859	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DUS4L	NM_001270419	exon7	c.A528G	p.E176E	GGCTGAAGCAACA	.	98	4	69	0	.	90	G	107216859	A	G	107216859	2	3	34	1	0	0	0	0	0	0	0	1	4808	69	3	2		2	DUS4L	7	107216859	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	2470487	107216859	51921804	102	4055											
KLHDC10	23008	hgsc.bcm.edu;bcgsc.ca	37	7	129762020	129762020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHDC10	NM_014997	exon5	c.T757C	p.S253P	AACCTATCCTGTG	.	80	4	87	0	.	90	C	129762020	T	C	129762020	3	2	34	1	0	0	0	0	1	0	0	0	8355	1435	50	2	775	2	KLHDC10	7	129762020	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	22545161	129762020	29376643	103	4056											
TMEM209	84928	hgsc.bcm.edu;bcgsc.ca	37	7	129818251	129818251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM209	NM_032842	exon10	c.A1237G	p.R413G	TGATCCTTTCAAA	.	54	4	60	0	.	92	C	129818251	T	C	129818251	3	2	34	1	0	0	0	0	1	0	0	0	16131	1608	56	2	472	2	TMEM209	7	129818251	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	56231	129818251	29320412	104	4057											
PPP3CC	5533	hgsc.bcm.edu;bcgsc.ca	37	8	22333119	22333119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP3CC	NM_001243974	exon3	c.A354G	p.R118R	GGACAGAGGCTAT	.	85	4	90	0	.	227	G	22333119	A	G	22333119	2	3	34	1	0	0	0	0	0	0	0	1	12399	301	11	2		2	PPP3CC	8	22333119	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		22333119	124030903	105	4058											
EGR3	1960	broad.mit.edu;ucsc.edu	37	8	22548280	22548280	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EGR3	NM_004430	exon2	c.C870T	p.D290D	CAGCTCGTCCGAA	.	48	12	21	1	.	90	A	22548280	G	A	22548280	2	1	34	1	0	0	0	0	0	0	0	1	4973	1136	40	1		1	EGR3	8	22548280	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	215161	22548280	123815742	106	4059											
UNC5D	137970	broad.mit.edu;bcgsc.ca	37	8	35647893	35647893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC5D	NM_080872	exon17	c.G2674T	p.A892S	TATTTCGCTACAC	.	78	31	77	1	.	96	T	35647893	G	T	35647893	3	4	34	1	0	0	0	0	1	0	0	0	16992	1087	38	1	2740	1	UNC5D	8	35647893	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	13099613	35647893	110716129	107	4060											
AGPAT6	137964	hgsc.bcm.edu;bcgsc.ca	37	8	41472557	41472557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT6	NM_178819	exon10	c.T1043C	p.V348A	ACCCTGTTGCTAT	.	90	5	124	0	.	90	C	41472557	T	C	41472557	3	2	34	1	0	0	0	0	1	0	0	0	391	1725	60	2	1077	2	AGPAT6	8	41472557	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	5824664	41472557	104891465	108	4061											
RP1	6101	hgsc.bcm.edu;bcgsc.ca	37	8	55542178	55542178	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RP1	NM_006269	exon4	c.T5736C	p.A1912A	GTATGCTCTTTGT	.	58	4	77	0	.	102	C	55542178	T	C	55542178	2	2	34	1	0	0	0	0	0	0	0	1	13532	1538	54	2		2	RP1	8	55542178	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	14069621	55542178	90821844	109	4062											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	61757511	61757511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD7	NM_017780	exon22	c.C4939G	p.L1647V	ACCATCCTGGTGT	.	99	5	78	0	.	141	G	61757511	C	G	61757511	3	3	34	1	0	0	0	0	1	0	0	0	3330	680	24	4	5021	4	CHD7	8	61757511	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	6215333	61757511	84606511	110	4063											
PDE7A	5150	hgsc.bcm.edu;bcgsc.ca	37	8	66636575	66636575	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE7A	NM_001242318	exon11	c.A1077G	p.K359K	AGCACATTTCAAA	.	58	4	73	0	.	90	C	66636575	T	C	66636575	2	2	34	1	0	0	0	0	0	0	0	1	11651	1490	52	2		2	PDE7A	8	66636575	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	4879064	66636575	79727447	111	4064											
KLF10	7071	hgsc.bcm.edu;bcgsc.ca	37	8	103664250	103664250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLF10	NM_005655	exon3	c.T310C	p.S104P	CTTGAGAGGGTTC	.	87	4	80	0	.	226	G	103664250	A	G	103664250	3	3	34	1	0	0	0	0	1	0	0	0	8338	304	11	2	1140	2	KLF10	8	103664250	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	37027675	103664250	42699772	112	4065											
RAD21	5885	hgsc.bcm.edu;bcgsc.ca	37	8	117870690	117870690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.G382T	p.D128Y	CCACATCGATGTC	.	82	4	56	0	.	227	A	117870690	C	A	117870690	3	1	34	1	0	0	0	0	1	0	0	0	12981	884	31	1	1553	1	RAD21	8	117870690	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	14206440	117870690	28493332	113	4066											
TAF2	6873	hgsc.bcm.edu;bcgsc.ca	37	8	120810035	120810035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TAF2	NM_003184	exon7	c.T844C	p.S282P	GGTATGATGTGGT	.	95	4	91	0	.	274	G	120810035	A	G	120810035	3	3	34	1	0	0	0	0	1	0	0	0	15521	333	12	2	2835	2	TAF2	8	120810035	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	2939345	120810035	25553987	114	4067											
SMARCA2	6595	hgsc.bcm.edu;bcgsc.ca	37	9	2029231	2029231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMARCA2	NM_139045	exon2	c.T209C	p.M70T	AAGGCATGCATCA	.	73	4	103	0	.	653	C	2029231	T	C	2029231	3	2	34	1	0	0	0	0	1	0	0	0	14769	1464	51	2	211	2	SMARCA2	9	2029231	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10		2029231	139184200	115	4068											
ADAMTSL1	92949	hgsc.bcm.edu;bcgsc.ca	37	9	18636002	18636002	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADAMTSL1	NM_052866	exon6	c.T663C	p.G221G	AAAAGGTCCTGAT	.	98	4	163	0	.	230	C	18636002	T	C	18636002	2	2	34	1	0	0	0	0	0	0	0	1	274	1654	58	2		2	ADAMTSL1	9	18636002	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	16606771	18636002	122577429	116	4069											
NFX1	4799	hgsc.bcm.edu;bcgsc.ca	37	9	33351736	33351736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NFX1	NM_147133	exon16	c.T2603C	p.M868T	CGTGTATGGCACC	.	54	4	54	0	.	91	C	33351736	T	C	33351736	3	2	34	1	0	0	0	0	1	0	0	0	10387	1464	51	2	2747	2	NFX1	9	33351736	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	14715734	33351736	107861695	117	4070											
CREB3	10488	hgsc.bcm.edu;bcgsc.ca	37	9	35733445	35733445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CREB3	NM_006368	exon4	c.A398G	p.E133G	AGAAGGAGGGGCT	.	84	4	125	0	.	90	G	35733445	A	G	35733445	3	3	34	1	0	0	0	0	1	0	0	0	3855	304	11	2	412	2	CREB3	9	35733445	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	2381709	35733445	105479986	118	4071											
C9orf41	138199	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	77614715	77614715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C9orf41	NM_152420	exon4	c.T662C	p.L221P	TAACCTAGCATAG	.	24	4	43	0	.	92	G	77614715	A	G	77614715	3	3	34	1	0	0	0	0	1	0	0	0	2482	420	15	2	587	2	C9orf41	9	77614715	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	41881270	77614715	63598716	119	4072											
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95051645	95051645	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IARS	NM_013417	exon2	c.G57A	p.L19L	AAACTCCAAGATT	.	58	4	115	0	.	92	T	95051645	C	T	95051645	2	4	34	1	0	0	0	0	0	0	0	1	7473	593	21	3		3	IARS	9	95051645	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	17436930	95051645	46161786	120	4073											
HSD17B3	3293	hgsc.bcm.edu;bcgsc.ca	37	9	99006632	99006632	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HSD17B3	NM_000197	exon9	c.A651G	p.K217K	TTTTGCTTTATAT	.	75	4	104	0	.	90	C	99006632	T	C	99006632	2	2	34	1	0	0	0	0	0	0	0	1	7385	1606	56	2		2	HSD17B3	9	99006632	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	3954987	99006632	42206799	121	4074											
OR2K2	26248	hgsc.bcm.edu;bcgsc.ca	37	9	114089950	114089950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR2K2	NM_205859	exon1	c.T764C	p.L255P	ATAGAGAGGGCAG	.	61	4	101	0	.	69	G	114089950	A	G	114089950	3	3	34	1	0	0	0	0	1	0	0	0	11005	304	11	2	189	2	OR2K2	9	114089950	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	15083318	114089950	27123481	122	4075											
DNAJC25	548645	hgsc.bcm.edu;bcgsc.ca	37	9	114411855	114411855	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAJC25	NM_001015882	exon3	c.A612G	p.K204K	AGAAAAAGGCAAA	.	81	4	118	0	.	22	G	114411855	A	G	114411855	2	3	34	1	0	0	0	0	0	0	0	1	4643	69	3	2		2	DNAJC25	9	114411855	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	321905	114411855	26801576	123	4076											
SLC46A2	57864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115652239	115652239	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC46A2	NM_033051	exon1	c.C723T	p.P241P	CACGGCGGGGAGC	.	70	51	92	0	.	90	A	115652239	G	A	115652239	2	1	34	1	0	0	0	0	0	0	0	1	14645	1103	39	1		1	SLC46A2	9	115652239	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	1240384	115652239	25561192	124	4077											
RC3H2	54542	hgsc.bcm.edu;bcgsc.ca	37	9	125613389	125613389	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RC3H2	NM_001100588	exon20	c.A3351G	p.K1117K	ACTCTGTTTCTTC	.	77	5	147	0	.	523	C	125613389	T	C	125613389	2	2	34	1	0	0	0	0	0	0	0	1	13167	1722	60	2		2	RC3H2	9	125613389	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	9961150	125613389	15600042	125	4078											
PKN3	29941	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131469012	131469012	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKN3	NM_013355	exon4	c.T432C	p.A144A	GGCAGCTGCCCAG	.	54	5	57	0	.	521	C	131469012	T	C	131469012	2	2	34	1	0	0	0	0	0	0	0	1	11981	1567	55	2		2	PKN3	9	131469012	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	5855623	131469012	9744419	126	4079											
PHYH	5264	hgsc.bcm.edu;bcgsc.ca	37	10	13333891	13333891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PHYH	NM_006214	exon5	c.T436C	p.F146L	CAGTGAAGCACTC	.	63	4	44	0	.	90	G	13333891	A	G	13333891	3	3	34	1	0	0	0	0	1	0	0	0	11864	72	3	2	600	2	PHYH	10	13333891	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		13333891	122200856	127	4080											
CCDC6	8030	hgsc.bcm.edu;bcgsc.ca	37	10	61612353	61612353	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC6	NM_005436	exon2	c.A411G	p.E137E	TTCTTCTTCTTTC	.	84	4	128	0	.	686	C	61612353	T	C	61612353	2	2	34	1	0	0	0	0	0	0	0	1	2830	1606	56	2		2	CCDC6	10	61612353	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	48278462	61612353	73922394	128	4081											
ANK3	288	hgsc.bcm.edu;bcgsc.ca	37	10	61843261	61843261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANK3	NM_001204404	exon34	c.T4192C	p.F1398L	TGGAAAATGGCAG	.	59	4	88	0	.	107	G	61843261	A	G	61843261	3	3	34	1	0	0	0	0	1	0	0	0	622	101	4	2	9301	2	ANK3	10	61843261	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	230908	61843261	73691486	129	4082											
CCAR1	55749	hgsc.bcm.edu;bcgsc.ca	37	10	70515291	70515291	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCAR1	NM_018237	exon13	c.A1623G	p.Q541Q	CACACAATGGTAA	.	95	4	160	0	.	159	G	70515291	A	G	70515291	2	3	34	1	0	0	0	0	0	0	0	1	2730	98	4	2		2	CCAR1	10	70515291	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	8672030	70515291	65019456	130	4083											
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71025391	71025391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HKDC1	NM_025130	exon17	c.T2423C	p.L808P	TGGGCCTGGACAG	.	88	27	76	0	.	95	C	71025391	T	C	71025391	3	2	34	1	0	0	0	0	1	0	0	0	7193	1580	55	2	2489	2	HKDC1	10	71025391	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	510100	71025391	64509356	131	4084											
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78669796	78669796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNMA1	NM_001161352	exon25	c.A3075G	p.E1025E	GTACAGTTCTGTA	.	39	4	61	0	.	93	C	78669796	T	C	78669796	2	2	34	1	0	0	0	0	0	0	0	1	8073	1722	60	2		2	KCNMA1	10	78669796	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	7644405	78669796	56864951	132	4085											
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88421086	88421086	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.1047delC	p.I349fs	CGTCATCGCCAAG	.	94	34	112	0	.	69	-	88421086	C	-	88421086	7	5	34	1	0	1	0	1	0	0	0	0	10882	874	31	0	1077	0	OPN4	10	88421086	Frame_Shift_Del	DEL	C	TCGA-CC-A3MB-01A-11D-A20W-10	9751290	88421086	47113661	133	4086											
KIF20B	9585	hgsc.bcm.edu;bcgsc.ca	37	10	91484863	91484863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF20B	NM_016195	exon15	c.A1949G	p.D650G	AATGTGACACTCG	.	74	4	104	0	.	93	G	91484863	A	G	91484863	3	3	34	1	0	0	0	0	1	0	0	0	8287	275	10	2	2003	2	KIF20B	10	91484863	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	3063777	91484863	44049884	134	4087											
MYOF	26509	hgsc.bcm.edu;bcgsc.ca	37	10	95109578	95109578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYOF	NM_013451	exon36	c.T4070C	p.L1357P	ATGAAGAGAACAG	.	83	4	147	0	.	93	G	95109578	A	G	95109578	3	3	34	1	0	0	0	0	1	0	0	0	10089	304	11	2	2191	2	MYOF	10	95109578	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	3624715	95109578	40425169	135	4088											
C10orf137	26098	hgsc.bcm.edu;bcgsc.ca	37	10	127431772	127431772	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C10orf137	NM_001202438	exon18	c.A2517G	p.R839R	AAAGAGAATGGGT	.	84	4	99	0	.	590	G	127431772	A	G	127431772	2	3	34	1	0	0	0	0	0	0	0	1	1594	243	9	2		2	C10orf137	10	127431772	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	32322194	127431772	8102975	136	4089											
OR52B4	143496	hgsc.bcm.edu;bcgsc.ca	37	11	4389188	4389188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR52B4	NM_001005161	exon1	c.A338G	p.E113G	CCTGACTCAGAGA	.	83	4	101	0	.	90	C	4389188	T	C	4389188	3	2	34	1	0	0	0	0	1	0	0	0	11112	1551	54	2	610	2	OR52B4	11	4389188	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10		4389188	130617328	137	4090											
MS4A14	84689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	60184403	60184403	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MS4A14	NM_001261828	exon6	c.G2061A	p.W687X	ATTCTGGCAATTC	.	89	17	102	0	.	90	A	60184403	G	A	60184403	4	1	34	1	0	0	0	0	0	1	0	0	9858	1212	42	3	1980	3	MS4A14	11	60184403	Nonsense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	55795215	60184403	74822113	138	4091											
TMEM132A	54972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60701185	60701185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM132A	NM_017870	exon8	c.C1531T	p.R511C	CAGGTCCGCGGCT	.	69	38	64	0	.	227	T	60701185	C	T	60701185	3	4	34	1	0	0	0	0	1	0	0	0	16042	652	23	1	1561	1	TMEM132A	11	60701185	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	516782	60701185	74305331	139	4092											
SF1	7536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64534515	64534515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SF1	NM_001178030	exon12	c.C1814T	p.P605L	GGCGGCGGCGGCA	.	74	14	61	0	.	227	A	64534515	G	A	64534515	3	1	34	1	0	0	0	0	1	0	0	0	14145	1116	39	1	622	1	SF1	11	64534515	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	3833330	64534515	70472001	140	4093											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66472881	66472881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTBN2	NM_006946	exon14	c.C1866G	p.S622R	CTCATAGCTCTGC	.	118	73	96	0	.	155	C	66472881	G	C	66472881	3	2	34	1	0	0	0	0	1	0	0	0	15119	962	34	4	5402	4	SPTBN2	11	66472881	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	1938366	66472881	68533635	141	4094											
KDM4D	55693	hgsc.bcm.edu;bcgsc.ca	37	11	94731384	94731384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KDM4D	NM_018039	exon3	c.T848C	p.F283S	CTGGCTTCAACCA	.	85	5	107	0	.	226	C	94731384	T	C	94731384	3	2	34	1	0	0	0	0	1	0	0	0	8131	1783	62	2	850	2	KDM4D	11	94731384	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	28258503	94731384	40275132	142	4095											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108138031	108138031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATM	NM_000051	exon17	c.G2600C	p.S867T	GTGTTAGTGATGC	.	68	31	124	0	.	3419	C	108138031	G	C	108138031	3	2	34	1	0	0	0	0	1	0	0	0	1109	1029	36	4	2662	4	ATM	11	108138031	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	13406647	108138031	26868485	143	4096											
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9334596	9334596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PZP	NM_002864	exon14	c.A1664G	p.E555G	TCAATCTCAAATT	.	123	6	132	0	.	157	C	9334596	T	C	9334596	3	2	34	1	0	0	0	0	1	0	0	0	12869	1551	54	2	2876	2	PZP	12	9334596	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10		9334596	124517299	144	4097											
EPS8	2059	hgsc.bcm.edu;bcgsc.ca	37	12	15774278	15774278	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPS8	NM_004447	exon21	c.A2442G	p.E814E	AAAAGATTCCACT	.	67	6	64	0	.	94	C	15774278	T	C	15774278	2	2	34	1	0	0	0	0	0	0	0	1	5194	1490	52	2		2	EPS8	12	15774278	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	6439682	15774278	118077617	145	4098											
SLCO1B1	10599	hgsc.bcm.edu;bcgsc.ca	37	12	21392086	21392086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1B1	NM_006446	exon15	c.T2039C	p.V680A	ATTTTGTCCCTTC	.	70	4	67	0	.	97	C	21392086	T	C	21392086	3	2	34	1	0	0	0	0	1	0	0	0	14723	1667	58	2	2093	2	SLCO1B1	12	21392086	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	5617808	21392086	112459809	146	4099											
SLCO1A2	6579	hgsc.bcm.edu;bcgsc.ca	37	12	21453353	21453353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1A2	NM_134431	exon9	c.A839G	p.D280G	ATGATGTCAGCAT	.	44	4	64	0	.	157	C	21453353	T	C	21453353	3	2	34	1	0	0	0	0	1	0	0	0	14722	1667	58	2	1205	2	SLCO1A2	12	21453353	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	61267	21453353	112398542	147	4100											
BICD1	636	hgsc.bcm.edu;bcgsc.ca	37	12	32369322	32369322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon2	c.A355G	p.S119G	AAACAGAGCCGGG	.	116	5	127	0	.	153	G	32369322	A	G	32369322	3	3	34	1	0	0	0	0	1	0	0	0	1428	304	11	2	361	2	BICD1	12	32369322	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	10915969	32369322	101482573	148	4101											
BICD1	636	hgsc.bcm.edu;bcgsc.ca	37	12	32520657	32520657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon9	c.A2818G	p.R940G	GCCGGGAGGCAAG	.	73	4	60	0	.	153	G	32520657	A	G	32520657	3	3	34	1	0	0	0	0	1	0	0	0	1428	295	11	2	2852	2	BICD1	12	32520657	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	151335	32520657	101331238	149	4102											
OR10A7	121364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55614885	55614885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR10A7	NM_001005280	exon1	c.C77A	p.S26Y	AAGTTTCCCTCTT	.	176	82	263	1	.	72	A	55614885	C	A	55614885	3	1	34	1	0	0	0	0	1	0	0	0	10895	855	30	3	79	3	OR10A7	12	55614885	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	23094228	55614885	78237010	150	4103											
TMBIM4	51643	hgsc.bcm.edu;bcgsc.ca	37	12	66531841	66531841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMBIM4	NM_016056	exon7	c.T616C	p.S206P	CAGGTGACAGTTT	.	81	4	114	0	.	515	G	66531841	A	G	66531841	3	3	34	1	0	0	0	0	1	0	0	0	15979	275	10	2	104	2	TMBIM4	12	66531841	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	10916956	66531841	67320054	151	4104											
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70724192	70724192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNOT2	NM_001199302	exon7	c.C512A	p.P171Q	GCTCGCCAAGCAT	.	126	70	199	0	.	226	A	70724192	C	A	70724192	3	1	34	1	0	0	0	0	1	0	0	0	3619	594	21	3	530	3	CNOT2	12	70724192	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	4192351	70724192	63127703	152	4105											
NAV3	89795	hgsc.bcm.edu;bcgsc.ca	37	12	78388596	78388596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAV3	NM_014903	exon6	c.T685C	p.Y229H	GCCAGATATGCAA	.	56	4	89	0	.	279	C	78388596	T	C	78388596	3	2	34	1	0	0	0	0	1	0	0	0	10185	1406	49	2	707	2	NAV3	12	78388596	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	7664404	78388596	55463299	153	4106											
PPP1R12A	4659	hgsc.bcm.edu;bcgsc.ca	37	12	80191131	80191131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP1R12A	NM_002480	exon16	c.A2136G	p.G712G	ACTTCTTCCTATT	.	69	4	97	0	.	273	C	80191131	T	C	80191131	2	2	34	1	0	0	0	0	0	0	0	1	12354	1770	62	2		2	PPP1R12A	12	80191131	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	1802535	80191131	53660764	154	4107											
VEZT	55591	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	95650962	95650962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VEZT	NM_017599	exon3	c.A205G	p.S69G	ATCAAAAGTTGGA	.	42	4	75	0	.	23	G	95650962	A	G	95650962	3	3	34	1	0	0	0	0	1	0	0	0	17153	72	3	2	215	2	VEZT	12	95650962	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	15459831	95650962	38200933	155	4108											
BCL7A	605	hgsc.bcm.edu;bcgsc.ca	37	12	122492735	122492735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL7A	NM_020993	exon5	c.A464G	p.Q155R	ATTCACAGTCCTC	.	75	4	68	0	.	685	G	122492735	A	G	122492735	3	3	34	1	0	0	0	0	1	0	0	0	1378	188	7	2	482	2	BCL7A	12	122492735	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	26841773	122492735	11359160	156	4109											
RNF17	56163	hgsc.bcm.edu;bcgsc.ca	37	13	25399863	25399863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNF17	NM_001184993	exon16	c.G2198A	p.C733Y	AAGCCTGTGTAGC	.	45	4	87	0	.	228	A	25399863	G	A	25399863	3	1	34	1	0	0	0	0	1	0	0	0	13461	1377	48	3	2260	3	RNF17	13	25399863	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10		25399863	89770015	157	4110											
FRY	10129	hgsc.bcm.edu;bcgsc.ca	37	13	32698997	32698997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRY	NM_023037	exon7	c.T701C	p.V234A	TTGGAGTGTTGGC	.	87	4	92	0	.	142	C	32698997	T	C	32698997	3	2	34	1	0	0	0	0	1	0	0	0	6063	1696	59	2	727	2	FRY	13	32698997	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	7299134	32698997	82470881	158	4111											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35758164	35758164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NBEA	NM_015678	exon30	c.C4883A	p.A1628D	TCCTTGCCAAGTT	.	126	73	149	0	.	144	A	35758164	C	A	35758164	3	1	34	1	0	0	0	0	1	0	0	0	10187	739	26	3	5001	3	NBEA	13	35758164	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	3059167	35758164	79411714	159	4112											
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41891035	41891035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAA16	NM_001110798	exon2	c.T108C	p.I36I	GATGATTCTGTCG	.	81	4	86	0	.	90	C	41891035	T	C	41891035	2	2	34	1	0	0	0	0	0	0	0	1	10119	1771	62	2		2	NAA16	13	41891035	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	6132871	41891035	73278843	160	4113											
KIAA0391	9692	hgsc.bcm.edu;bcgsc.ca	37	14	35593210	35593210	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0391	NM_014672	exon2	c.A759G	p.G253G	CCAGGGAGCTCTC	.	68	4	95	0	.	226	G	35593210	A	G	35593210	2	3	34	1	0	0	0	0	0	0	0	1	8172	291	11	2		2	KIAA0391	14	35593210	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		35593210	71756330	161	4114											
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64519805	64519805	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYNE2	NM_182914	exon48	c.T9174C	p.I3058I	AGCTATTGATTTG	.	84	4	146	0	.	164	C	64519805	T	C	64519805	2	2	34	1	0	0	0	0	0	0	0	1	15443	1800	63	2		2	SYNE2	14	64519805	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	28926595	64519805	42829735	162	4115											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64989571	64989571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZBTB1	NM_014950	exon2	c.G1349T	p.C450F	GTGCATGTGGTAA	.	62	44	88	0	.	91	T	64989571	G	T	64989571	3	4	34	1	0	0	0	0	1	0	0	0	17519	1377	48	3	1351	3	ZBTB1	14	64989571	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	469766	64989571	42359969	163	4116											
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68248209	68248209	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFYVE26	NM_015346	exon22	c.T4410C	p.D1470D	AGATGCATCCTTC	.	49	4	68	0	.	162	G	68248209	A	G	68248209	2	3	34	1	0	0	0	0	0	0	0	1	17665	214	8	2		2	ZFYVE26	14	68248209	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	3258638	68248209	39101331	164	4117											
SIPA1L1	26037	ucsc.edu;bcgsc.ca	37	14	72205030	72205030	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SIPA1L1	NM_015556	exon21	c.A5259G	p.E1753E	TCGGGAAGATTTG	.	24	4	28	0	.	156	G	72205030	A	G	72205030	2	3	34	1	0	0	0	0	0	0	0	1	14329	69	3	2		2	SIPA1L1	14	72205030	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	3956821	72205030	35144510	165	4118											
RGS6	9628	hgsc.bcm.edu;bcgsc.ca	37	14	72945005	72945005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RGS6	NM_001204424	exon12	c.A822G	p.R274R	CGACAGACATTGT	.	61	4	95	0	.	227	G	72945005	A	G	72945005	2	3	34	1	0	0	0	0	0	0	0	1	13309	272	10	2		2	RGS6	14	72945005	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	739975	72945005	34404535	166	4119											
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91770230	91770230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC88C	NM_001080414	exon20	c.C3450T	p.N1150N	GCTTTCGTTCTCC	.	76	5	104	0	.	25	A	91770230	G	A	91770230	2	1	34	1	0	0	0	0	0	0	0	1	2865	1136	40	1		1	CCDC88C	14	91770230	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	18825225	91770230	15579310	167	4120											
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92790275	92790275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC24A4	NM_153646	exon1	c.G101A	p.C34Y	TGGTGTGCTGTGC	.	90	15	79	0	.	93	A	92790275	G	A	92790275	3	1	34	1	0	0	0	0	1	0	0	0	14468	1319	46	3	52	3	SLC24A4	14	92790275	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	1020045	92790275	14559265	168	4121											
EHD4	30844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42245961	42245961	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EHD4	NM_139265	exon3	c.413+1G>T	.	TCCTTACCGATTC	.	66	36	77	0	.	92	A	42245961	C	A	42245961	5	1	34	1	0	0	0	0	0	0	1	0	4980	521	18	3	1231	3	EHD4	15	42245961	Splice_Site	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10		42245961	60285431	169	4122											
FAM81A	145773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59801108	59801108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM81A	NM_152450	exon6	c.G590A	p.S197N	AGCAGAGCACCAA	.	567	149	583	0	.	91	A	59801108	G	A	59801108	3	1	34	1	0	0	0	0	1	0	0	0	5628	971	34	3	608	3	FAM81A	15	59801108	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	17555147	59801108	42730284	170	4123											
PAQR5	54852	hgsc.bcm.edu;bcgsc.ca	37	15	69672244	69672244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAQR5	NM_001104554	exon4	c.T74C	p.L25P	GCATCCTGTTCGG	.	90	4	80	0	.	70	C	69672244	T	C	69672244	3	2	34	1	0	0	0	0	1	0	0	0	11438	1580	55	2	80	2	PAQR5	15	69672244	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	9871136	69672244	32859148	171	4124											
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93489406	93489406	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.G1337C	p.S446T	TCCACAGTAGGAA	.	186	68	276	1	.	229	C	93489406	G	C	93489406	3	2	34	1	0	0	0	0	1	0	0	0	3325	1029	36	4	1379	4	CHD2	15	93489406	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	23817162	93489406	9041986	172	4125											
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93489423	93489423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.A1354G	p.T452A	TCAAAAACCATCC	.	199	76	288	0	.	229	G	93489423	A	G	93489423	3	3	34	1	0	0	0	0	1	0	0	0	3325	43	2	2	1396	2	CHD2	15	93489423	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	17	93489423	9041969	173	4126											
VPS35	55737	hgsc.bcm.edu;bcgsc.ca	37	16	46708512	46708512	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS35	NM_018206	exon9	c.T975C	p.F325F	TATATCAAAAAGT	.	77	4	100	0	.	90	G	46708512	A	G	46708512	2	3	34	1	0	0	0	0	0	0	0	1	17200	127	5	2		2	VPS35	16	46708512	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		46708512	43646241	174	4127											
RBL2	5934	hgsc.bcm.edu;bcgsc.ca	37	16	53513864	53513864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RBL2	NM_005611	exon19	c.A2842G	p.S948G	AGCAGAAGCCATC	.	98	4	141	0	.	841	G	53513864	A	G	53513864	3	3	34	1	0	0	0	0	1	0	0	0	13110	72	3	2	2916	2	RBL2	16	53513864	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	6805352	53513864	36840889	175	4128											
ZFP1	162239	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	75204019	75204019	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFP1	NM_153688	exon4	c.A1011G	p.S337S	GAACTCACAGCTC	.	16	4	34	0	.	92	G	75204019	A	G	75204019	2	3	34	1	0	0	0	0	0	0	0	1	17633	146	6	2		2	ZFP1	16	75204019	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	21690155	75204019	15150734	176	4129											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	123	91	191	0	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	34	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10		7577534	73617676	177	4130											
KIAA0100	9703	hgsc.bcm.edu;bcgsc.ca	37	17	26946934	26946934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0100	NM_014680	exon30	c.C5464T	p.R1822W	GCTGCCGCACAGC	.	82	4	69	0	.	93	A	26946934	G	A	26946934	3	1	34	1	0	0	0	0	1	0	0	0	8154	1086	38	1	1283	1	KIAA0100	17	26946934	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	19369400	26946934	54248276	178	4131											
KLHL11	55175	hgsc.bcm.edu;bcgsc.ca	37	17	40010298	40010298	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHL11	NM_018143	exon2	c.C1821T	p.Y607Y	ATCTTTGTAATAG	.	81	4	119	0	.	90	A	40010298	G	A	40010298	2	1	34	1	0	0	0	0	0	0	0	1	8367	1372	48	3		3	KLHL11	17	40010298	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	13063364	40010298	41184912	179	4132											
WNT9B	7484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	44953863	44953863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WNT9B	NM_003396	exon4	c.G853T	p.E285X	TACATGGAGGACT	.	137	76	144	0	.	522	T	44953863	G	T	44953863	4	4	34	1	0	0	0	0	0	1	0	0	17396	1175	41	3	867	3	WNT9B	17	44953863	Nonsense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	4943565	44953863	36241347	180	4133											
BZRAP1	9256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56388536	56388536	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BZRAP1	NM_004758	exon19	c.G3120T	p.L1040L	CTCCACCAGTACA	.	115	84	109	1	.	229	A	56388536	C	A	56388536	2	1	34	1	0	0	0	0	0	0	0	1	1577	581	21	3		3	BZRAP1	17	56388536	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	11434673	56388536	24806674	181	4134											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76503588	76503588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH17	NM_173628	exon28	c.G4536C	p.Q1512H	CGGGAGCTGGGTG	.	151	30	129	0	.	142	G	76503588	C	G	76503588	3	3	34	1	0	0	0	0	1	0	0	0	4601	796	28	4	9068	4	DNAH17	17	76503588	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	20115052	76503588	4691622	182	4135											
SPIRE1	56907	hgsc.bcm.edu;bcgsc.ca	37	18	12453092	12453092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPIRE1	NM_001128626	exon14	c.T1822C	p.S608P	TATAAGACCAAGT	.	59	4	111	0	.	90	G	12453092	A	G	12453092	3	3	34	1	0	0	0	0	1	0	0	0	15070	275	10	2	464	2	SPIRE1	18	12453092	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		12453092	65624156	183	4136											
DSEL	92126	ucsc.edu;bcgsc.ca	37	18	65180906	65180906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DSEL	NM_032160	exon2	c.T970C	p.F324L	AATAGAACCAAAA	.	43	4	84	0	.	157	G	65180906	A	G	65180906	3	3	34	1	0	0	0	0	1	0	0	0	4775	43	2	2	2702	2	DSEL	18	65180906	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	52727814	65180906	12896342	184	4137											
KRI1	65095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10671691	10671691	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRI1	NM_023008	exon8	c.C669G	p.S223S	CTTCAGGGAATCT	.	110	26	93	0	.	69	C	10671691	G	C	10671691	2	2	34	1	0	0	0	0	0	0	0	1	8444	1219	43	4		4	KRI1	19	10671691	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10		10671691	48457292	185	4138											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22155053	22155053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF208	NM_007153	exon4	c.G2783T	p.W928L	GACAACCAGCTGA	.	68	13	101	0	.	7	A	22155053	C	A	22155053	3	1	34	1	0	0	0	0	1	0	0	0	17763	595	21	3	1063	3	ZNF208	19	22155053	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	11483362	22155053	36973930	186	4139											
LGI4	163175	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35622722	35622722	+	Silent	SNP	C	C	T	rs191436645		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LGI4	NM_139284	exon5	c.G429A	p.L143L	TCGGAACAGGAAT	.	147	77	190	1	C|0.999;T|0.001	91	T	35622722	C	T	35622722	2	4	34	1	0	0	0	0	0	0	0	1	8754	465	17	3		3	LGI4	19	35622722	Silent	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	13467669	35622722	23506261	187	4140											
KIRREL2	84063	hgsc.bcm.edu;bcgsc.ca	37	19	36353409	36353409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIRREL2	NM_199180	exon12	c.G1525A	p.V509M	CCCACTGTGCGGA	.	74	4	50	0	.	93	A	36353409	G	A	36353409	3	1	34	1	0	0	0	0	1	0	0	0	8325	1377	48	3	1571	3	KIRREL2	19	36353409	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	730687	36353409	22775574	188	4141											
ZNF345	25850	hgsc.bcm.edu;bcgsc.ca	37	19	37368330	37368330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF345	NM_001242476	exon4	c.A598G	p.K200E	GGTGAGAAACCTT	.	76	4	61	0	.	91	G	37368330	A	G	37368330	3	3	34	1	0	0	0	0	1	0	0	0	17856	247	9	2	600	2	ZNF345	19	37368330	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	1014921	37368330	21760653	189	4142											
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46915065	46915065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC8	NM_032040	exon1	c.C1003G	p.Q335E	CCCTCTGATTATC	.	160	20	205	0	.	93	C	46915065	G	C	46915065	3	2	34	1	0	0	0	0	1	0	0	0	2853	1299	45	4	617	4	CCDC8	19	46915065	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10	9546735	46915065	12213918	190	4143											
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47207810	47207810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRKD2	NM_016457	exon4	c.G608C	p.S203T	TGGCCACTGGCCA	.	100	26	106	0	.	759	G	47207810	C	G	47207810	3	3	34	1	0	0	0	0	1	0	0	0	12519	565	20	4	2088	4	PRKD2	19	47207810	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	292745	47207810	11921173	191	4144											
ARHGAP35	2909	hgsc.bcm.edu;bcgsc.ca	37	19	47424967	47424967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_004491	exon1	c.T3035C	p.L1012P	CTAAGCTCTCTAT	.	123	5	113	0	.	.	C	47424967	T	C	47424967	3	2	34	1	0	0	0	0	1	0	0	0	6795	1551	54	2	3037	2	ARHGAP35	19	47424967	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	217157	47424967	11704016	192	4145											
ZNF17	7565	hgsc.bcm.edu;bcgsc.ca	37	19	57932584	57932584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF17	NM_006959	exon3	c.T1724C	p.V575A	AAAAAGTTCACAC	.	79	4	100	0	.	90	C	57932584	T	C	57932584	3	2	34	1	0	0	0	0	1	0	0	0	17740	1725	60	2	1734	2	ZNF17	19	57932584	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	10507617	57932584	1196399	193	4146											
ZNF749	388567	broad.mit.edu;bcgsc.ca	37	19	57954874	57954874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001023561	exon3	c.C358A	p.L120M	CATGACCTGCACC	.	145	8	144	1	.	.	A	57954874	C	A	57954874	3	1	34	1	0	0	0	0	1	0	0	0	18128	680	24	3	368	3	ZNF749	19	57954874	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	22290	57954874	1174109	194	4147											
ZNF549	256051	hgsc.bcm.edu;bcgsc.ca	37	19	58048846	58048846	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF549	NM_001199295	exon4	c.A474G	p.K158K	AGAGAAACACATC	.	100	5	117	0	.	91	G	58048846	A	G	58048846	2	3	34	1	0	0	0	0	0	0	0	1	17978	40	2	2		2	ZNF549	19	58048846	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	93972	58048846	1080137	195	4148											
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3102976	3102976	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBOX5	NM_014948	exon3	c.C309T	p.G103G	AGCTGGGCCCAGG	.	102	47	114	0	.	227	A	3102976	G	A	3102976	2	1	34	1	0	0	0	0	0	0	0	1	16891	1190	42	3		3	UBOX5	20	3102976	Silent	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10		3102976	59922544	196	4149											
OVOL2	58495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	18022310	18022310	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OVOL2	NM_021220	exon3	c.G379C	p.G127R	GGAAGCCCTTGCC	.	142	6	157	0	.	68	G	18022310	C	G	18022310	3	3	34	1	0	0	0	0	1	0	0	0	11327	623	22	4	456	4	OVOL2	20	18022310	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	14919334	18022310	45003210	197	4150											
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49214133	49214133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM65C	NM_080829	exon14	c.G1762T	p.G588C	GGGAGCCCCCAAA	.	140	18	109	0	.	92	A	49214133	C	A	49214133	3	1	34	1	0	0	0	0	1	0	0	0	5601	623	22	3	1114	3	FAM65C	20	49214133	Missense_Mutation	SNP	C	TCGA-CC-A3MB-01A-11D-A20W-10	31191823	49214133	13811387	198	4151											
KCNJ6	3763	hgsc.bcm.edu;bcgsc.ca	37	21	38997717	38997717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNJ6	NM_002240	exon4	c.T1016C	p.V339A	GTCAGGACAGGTG	.	80	4	114	0	.	91	G	38997717	A	G	38997717	3	3	34	1	0	0	0	0	1	0	0	0	8055	275	10	2	259	2	KCNJ6	21	38997717	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		38997717	9132178	199	4152											
BRWD1	54014	hgsc.bcm.edu;bcgsc.ca	37	21	40590495	40590495	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BRWD1	NM_018963	exon30	c.T3474C	p.G1158G	TTTCTGACCCCAT	.	86	5	92	0	.	94	G	40590495	A	G	40590495	2	3	34	1	0	0	0	0	0	0	0	1	1525	262	10	2		2	BRWD1	21	40590495	Silent	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	1592778	40590495	7539400	200	4153											
SGSM1	129049	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	25263061	25263061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SGSM1	NM_001098497	exon10	c.G928A	p.V310I	TCCAGCGTCTACT	.	116	8	86	0	.	27	A	25263061	G	A	25263061	3	1	34	1	0	0	0	0	1	0	0	0	14222	1159	40	1	966	1	SGSM1	22	25263061	Missense_Mutation	SNP	G	TCGA-CC-A3MB-01A-11D-A20W-10		25263061	26041505	201	4154											
MYH9	4627	hgsc.bcm.edu;bcgsc.ca	37	22	36696312	36696312	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYH9	NM_002473	exon24	c.2839-2A>G	.	AGCTCCTGCCGGG	.	60	4	52	0	.	292	C	36696312	T	C	36696312	5	2	34	1	0	0	0	0	0	0	1	0	10042	1594	55	2	3121	2	MYH9	22	36696312	Splice_Site	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	11433251	36696312	14608254	202	4155											
PTCHD1	139411	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	23411906	23411906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCHD1	NM_173495	exon3	c.A2271T	p.L757F	ATGCTTAATTTAT	.	86	75	69	1	.	135	T	23411906	A	T	23411906	3	4	34	1	0	0	0	0	1	0	0	0	12732	359	13	4	2281	4	PTCHD1	23	23411906	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10		23411906	131858654	203	4156											
SYTL5	94122	hgsc.bcm.edu;bcgsc.ca	37	X	37913595	37913595	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYTL5	NM_001163334	exon2	c.T249C	p.A83A	TCAGGCTTGCTCA	.	67	4	45	0	.	131	C	37913595	T	C	37913595	2	2	34	1	0	0	0	0	0	0	0	1	15483	1596	56	2		2	SYTL5	23	37913595	Silent	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	14501689	37913595	117356965	204	4157											
SHROOM4	57477	hgsc.bcm.edu;bcgsc.ca	37	X	50351123	50351123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHROOM4	NM_020717	exon6	c.A3019G	p.N1007D	CTGGGTTCTCAAG	.	99	5	102	0	.	131	C	50351123	T	C	50351123	3	2	34	1	0	0	0	0	1	0	0	0	14296	1783	62	2	1478	2	SHROOM4	23	50351123	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	12437528	50351123	104919437	205	4158											
RPS6KA6	27330	hgsc.bcm.edu;bcgsc.ca	37	X	83389804	83389804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RPS6KA6	NM_014496	exon8	c.A632G	p.H211R	TTGATATGTCCTA	.	52	4	58	0	.	615	C	83389804	T	C	83389804	3	2	34	1	0	0	0	0	1	0	0	0	13655	1464	51	2	1665	2	RPS6KA6	23	83389804	Missense_Mutation	SNP	T	TCGA-CC-A3MB-01A-11D-A20W-10	33038681	83389804	71880756	206	4159											
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439078	110439078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAK3	NM_001128168	exon13	c.A1227T	p.Q409H	CCTGCAAGCTTTG	.	58	49	46	0	.	1043	T	110439078	A	T	110439078	3	4	34	1	0	0	0	0	1	0	0	0	11402	69	3	4	1277	4	PAK3	23	110439078	Missense_Mutation	SNP	A	TCGA-CC-A3MB-01A-11D-A20W-10	27049274	110439078	44831482	207	4160											
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7797423	7797423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CAMTA1	NM_015215	exon15	c.G3451A	p.A1151T	GGAATTGCCAGGT	.	60	25	61	0	.	520	A	7797423	G	A	7797423	3	1	35	1	0	0	0	0	1	0	0	0	2613	1319	46	3	3509	3	CAMTA1	1	7797423	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		7797423	241453198	1	4161											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16259330	16259330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SPEN	NM_015001	exon11	c.G6595T	p.A2199S	GGCCTTGCCCCAG	.	86	28	97	1	.	298	T	16259330	G	T	16259330	3	4	35	1	0	0	0	0	1	0	0	0	15037	1319	46	3	6637	3	SPEN	1	16259330	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	8461907	16259330	232991291	2	4162											
C1orf50	79078	ucsc.edu;bcgsc.ca	37	1	43240502	43240502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C1orf50	NM_024097	exon4	c.A377G	p.E126G	AACGGGAGAGTGG	.	42	4	48	0	.	91	G	43240502	A	G	43240502	3	3	35	1	0	0	0	0	1	0	0	0	2042	304	11	2	391	2	C1orf50	1	43240502	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	26981172	43240502	206010119	3	4163											
ALG6	29929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	63876884	63876884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ALG6	NM_013339	exon8	c.C562A	p.L188I	GACCTCCTAGGGT	.	173	10	191	0	.	90	A	63876884	C	A	63876884	3	1	35	1	0	0	0	0	1	0	0	0	522	680	24	3	588	3	ALG6	1	63876884	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	20636382	63876884	185373737	4	4164											
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74649130	74649130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LRRIQ3	NM_001105659	exon2	c.A239C	p.H80P	TTTCCATGGAGAT	.	144	36	168	0	.	92	G	74649130	T	G	74649130	3	3	35	1	0	0	0	0	1	0	0	0	9030	1464	51	5	1663	5	LRRIQ3	1	74649130	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	10772246	74649130	174601491	5	4165											
C1orf173	127254	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75038452	75038452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C1orf173	NM_001002912	exon14	c.C2942T	p.A981V	TCTTTGGCTGGTT	.	158	54	135	2	.	94	A	75038452	G	A	75038452	3	1	35	1	0	0	0	0	1	0	0	0	2014	1203	42	3	1654	3	C1orf173	1	75038452	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	389322	75038452	174212169	6	4166											
ZNF644	84146	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91406103	91406103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZNF644	NM_201269	exon3	c.A808G	p.M270V	TAGTCATAAGAAA	.	217	74	239	2	.	155	C	91406103	T	C	91406103	3	2	35	1	0	0	0	0	1	0	0	0	18057	1406	49	2	3191	2	ZNF644	1	91406103	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	16367651	91406103	157844518	7	4167											
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	102302451	102302451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	OLFM3	NM_058170	exon2	c.G200T	p.R67L	AGTTGGCGAAGTT	.	83	23	97	0	.	93	A	102302451	C	A	102302451	3	1	35	1	0	0	0	0	1	0	0	0	10854	768	27	1	1196	1	OLFM3	1	102302451	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	10896348	102302451	146948170	8	4168											
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	107600118	107600118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PRMT6	NM_018137	exon1	c.G781T	p.A261S	TCCCGCGCCGGCT	.	27	15	22	0	.	90	T	107600118	G	T	107600118	3	4	35	1	0	0	0	0	1	0	0	0	12540	1087	38	1	783	1	PRMT6	1	107600118	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	5297667	107600118	141650503	9	4169											
CAPZA1	829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113192075	113192075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CAPZA1	NM_006135	exon3	c.A139T	p.R47W	CTCCTCAGGGAAG	.	93	25	104	0	.	514	T	113192075	A	T	113192075	3	4	35	1	0	0	0	0	1	0	0	0	2640	179	7	4	149	4	CAPZA1	1	113192075	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	5591957	113192075	136058546	10	4170											
LCE5A	254910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152484032	152484032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LCE5A	NM_178438	exon2	c.C22A	p.Q8K	AGCCAGCAGCAGT	.	114	14	52	0	.	91	A	152484032	C	A	152484032	3	1	35	1	0	0	0	0	1	0	0	0	8675	711	25	3	24	3	LCE5A	1	152484032	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	39291957	152484032	96766589	11	4171											
RAB25	57111	hgsc.bcm.edu;broad.mit.edu	37	1	156035802	156035802	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	RAB25	NM_020387	exon2	c.G144A	p.E48E	GGTTGAGTTCTCC	.	94	4	44	0	.	227	A	156035802	G	A	156035802	2	1	35	1	0	0	0	0	0	0	0	1	12912	1020	36	3		3	RAB25	1	156035802	Silent	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	3551770	156035802	93214819	12	4172											
ETV3	2117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157095349	157095349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ETV3	NM_001145312	exon5	c.T823C	p.S275P	TATAGGAGAAGAT	.	219	85	103	1	.	226	G	157095349	A	G	157095349	3	3	35	1	0	0	0	0	1	0	0	0	5279	304	11	2	719	2	ETV3	1	157095349	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	1059547	157095349	92155272	13	4173											
CD55	1604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207510136	207510136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CD55	NM_001114752	exon7	c.A952C	p.T318P	ACCACCACAAAAA	.	158	81	104	0	.	187	C	207510136	A	C	207510136	3	2	35	1	0	0	0	0	1	0	0	0	3024	159	6	5	978	5	CD55	1	207510136	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	50414787	207510136	41740485	14	4174											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29296015	29296015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C2orf71	NM_001029883	exon1	c.G1113T	p.W371C	AAGGTCCCAGCTG	.	103	42	99	0	.	91	A	29296015	C	A	29296015	3	1	35	1	0	0	0	0	1	0	0	0	2191	624	22	3	2761	3	C2orf71	2	29296015	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		29296015	213903358	15	4175											
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32463205	32463205	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NLRC4	NM_001199138	exon6	c.C2517T	p.I839I	ACCTAGGATTTTC	.	87	20	88	0	.	276	A	32463205	G	A	32463205	2	1	35	1	0	0	0	0	0	0	0	1	10469	1164	41	3		3	NLRC4	2	32463205	Silent	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	3167190	32463205	210736168	16	4176											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu	37	2	32640007	32640007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	BIRC6	NM_016252	exon10	c.G1648T	p.E550X	AAGAGTGAAAAGA	.	98	5	101	0	.	233	T	32640007	G	T	32640007	4	4	35	1	0	0	0	0	0	1	0	0	1438	1291	45	3	1686	3	BIRC6	2	32640007	Nonsense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	176802	32640007	210559366	17	4177											
UBXN4	23190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	136513213	136513213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	UBXN4	NM_014607	exon5	c.C460T	p.L154F	GCAGAGCTTTGTG	.	31	12	32	0	.	92	T	136513213	C	T	136513213	3	4	35	1	0	0	0	0	1	0	0	0	16913	797	28	3	478	3	UBXN4	2	136513213	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	103873206	136513213	106686160	18	4178											
PSMD14	10213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162227718	162227718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PSMD14	NM_005805	exon7	c.C347G	p.P116R	GTCACCCTGGCTT	.	263	55	265	0	.	433	G	162227718	C	G	162227718	3	3	35	1	0	0	0	0	1	0	0	0	12697	681	24	4	365	4	PSMD14	2	162227718	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	25714505	162227718	80971655	19	4179											
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179407287	179407287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TTN	NM_001267550	exon349	c.A97196G	p.K32399R	CCAGGCTTGTCTA	.	90	4	84	0	.	636	C	179407287	T	C	179407287	3	2	35	1	0	0	0	0	1	0	0	0	16732	1609	56	2	10839	2	TTN	2	179407287	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	17179569	179407287	63792086	20	4180											
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211471635	211471635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CPS1	NM_001122633	exon19	c.G2180T	p.R727L	TGTCCCGAAGCTC	.	107	45	119	0	.	162	T	211471635	G	T	211471635	3	4	35	1	0	0	0	0	1	0	0	0	3823	1058	37	1	2254	1	CPS1	2	211471635	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	32064348	211471635	31727738	21	4181											
C2orf57	165100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232458647	232458647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C2orf57	NM_152614	exon1	c.C985A	p.R329S	AGCTTGCGCTCGG	.	42	11	40	0	.	91	A	232458647	C	A	232458647	3	1	35	1	0	0	0	0	1	0	0	0	2178	768	27	1	987	1	C2orf57	2	232458647	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	20987012	232458647	10740726	22	4182											
NEU2	4759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233899496	233899496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NEU2	NM_005383	exon2	c.A872T	p.Q291L	CAGCCCAGTGGCT	.	36	12	67	0	.	90	T	233899496	A	T	233899496	3	4	35	1	0	0	0	0	1	0	0	0	10342	188	7	4	878	4	NEU2	2	233899496	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	1440849	233899496	9299877	23	4183											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10128833	10128833	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FANCD2	NM_001018115	exon34	c.C3351T	p.Y1117Y	CCATTACTTGCAG	.	152	44	135	0	.	229	T	10128833	C	T	10128833	2	4	35	1	0	0	0	0	0	0	0	1	5665	576	20	3		3	FANCD2	3	10128833	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		10128833	187893597	24	4184											
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52558208	52558208	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	STAB1	NM_015136	exon68	c.C7635T	p.D2545D	CAGCGACACCTTT	.	78	21	114	1	.	139	T	52558208	C	T	52558208	2	4	35	1	0	0	0	0	0	0	0	1	15236	477	17	3		3	STAB1	3	52558208	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	42429375	52558208	145464222	25	4185											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69097137	69097137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TMF1	NM_007114	exon2	c.A719G	p.N240S	GGTGTATTGCTCT	.	135	44	121	0	.	90	C	69097137	T	C	69097137	3	2	35	1	0	0	0	0	1	0	0	0	16225	1493	52	2	2626	2	TMF1	3	69097137	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	16538929	69097137	128925293	26	4186											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	79639035	79639036	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ROBO1	NM_002941	exon2	c.27_28insT	p.L9fs	CATGACCAAAAAA	.	97	11	84	0	.	67	A	79639036	-	A	79639035	7	5	35	1	0	1	1	0	0	0	0	0	13513	593	21	0	5120	0	ROBO1	3	79639035	Frame_Shift_Ins	INS	-	TCGA-CC-A3MC-01A-11D-A22F-10	10541898	79639035	118383395	27	4187											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108156479	108156479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MYH15	NM_014981	exon26	c.A3203C	p.E1068A	TTGCCCTCCAGTT	.	123	38	128	0	.	73	G	108156479	T	G	108156479	3	3	35	1	0	0	0	0	1	0	0	0	10034	1551	54	5	2705	5	MYH15	3	108156479	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	28517444	108156479	89865951	28	4188											
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132061394	132061394	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ACPP	NM_001099	exon6	c.556-2A>C	.	TGTTTCAGGATTT	.	76	18	84	0	.	91	C	132061394	A	C	132061394	5	2	35	1	0	0	0	0	0	0	1	0	167	202	7	5	576	5	ACPP	3	132061394	Splice_Site	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	23904915	132061394	65961036	29	4189											
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184070097	184070097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CLCN2	NM_004366	exon21	c.A2294G	p.E765G	CTCATCTCGCCTT	.	82	23	78	0	.	90	C	184070097	T	C	184070097	3	2	35	1	0	0	0	0	1	0	0	0	3463	1551	54	2	418	2	CLCN2	3	184070097	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	52008703	184070097	13952333	30	4190											
NAAA	27163	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76857288	76857288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NAAA	NM_014435	exon3	c.G472T	p.D158Y	GCACATCCACTGT	.	66	10	64	0	.	91	A	76857288	C	A	76857288	3	1	35	1	0	0	0	0	1	0	0	0	10127	855	30	3	646	3	NAAA	4	76857288	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		76857288	114296988	31	4191											
EDNRA	1909	broad.mit.edu;bcgsc.ca	37	4	148407203	148407203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EDNRA	NM_001166055	exon2	c.C370G	p.L124V	CTTGCCCTTGGAG	.	88	6	114	1	.	586	G	148407203	C	G	148407203	3	3	35	1	0	0	0	0	1	0	0	0	4919	681	24	4	372	4	EDNRA	4	148407203	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	71549915	148407203	42747073	32	4192											
TSLP	85480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110409217	110409217	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TSLP	NM_033035	exon3	c.C225T	p.C75C	ACATTGCCTTACT	.	136	18	98	0	.	90	T	110409217	C	T	110409217	2	4	35	1	0	0	0	0	0	0	0	1	16625	747	26	3		3	TSLP	5	110409217	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		110409217	70506043	33	4193											
TSSK1B	83942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112769739	112769739	+	Silent	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TSSK1B	NM_032028	exon1	c.C798A	p.I266I	GCTGAGGATCTCG	.	62	14	44	0	.	268	T	112769739	G	T	112769739	2	4	35	1	0	0	0	0	0	0	0	1	16665	1164	41	3		3	TSSK1B	5	112769739	Silent	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	2360522	112769739	68145521	34	4194											
PCDHGB5	56101	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	140778538	140778538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	.	NM_018925	exon1	c.T844C	p.Y282H	TCCTTCTACAGAA	.	89	23	59	0	.	.	C	140778538	T	C	140778538	3	2	35	1	0	0	0	0	1	0	0	0	11566	1522	53	2	846	2	PCDHGB5	5	140778538	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	28008799	140778538	40136722	35	4195											
GPRIN1	114787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176026296	176026296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GPRIN1	NM_052899	exon2	c.G540A	p.M180I	TGTAAACATGGGA	.	134	12	106	0	.	92	T	176026296	C	T	176026296	3	4	35	1	0	0	0	0	1	0	0	0	6729	478	17	3	2490	3	GPRIN1	5	176026296	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	35247758	176026296	4888964	36	4196											
CAP2	10486	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17514129	17514129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CAP2	NM_006366	exon7	c.G580C	p.E194Q	TGGAGTGAACTTC	.	70	23	83	1	.	91	C	17514129	G	C	17514129	3	2	35	1	0	0	0	0	1	0	0	0	2620	1291	45	4	602	4	CAP2	6	17514129	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		17514129	153600938	37	4197											
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	24847845	24847845	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FAM65B	NM_014722	exon13	c.1152delC	p.A384fs	CAGCTTGGCAAAG	.	36	12	40	0	.	91	-	24847845	G	-	24847845	7	5	35	1	0	1	0	1	0	0	0	0	5600	1335	47	0	2108	0	FAM65B	6	24847845	Frame_Shift_Del	DEL	G	TCGA-CC-A3MC-01A-11D-A22F-10	7333716	24847845	146267222	38	4198											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	43250675	43250675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TTBK1	NM_032538	exon14	c.G2197T	p.E733X	GGGAAGGAGGAAG	.	66	25	56	0	.	353	T	43250675	G	T	43250675	4	4	35	1	0	0	0	0	0	1	0	0	16673	1175	41	3	2247	3	TTBK1	6	43250675	Nonsense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	18402830	43250675	127864392	39	4199											
FHL5	9457	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97053845	97053845	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FHL5	NM_020482	exon5	c.A402G	p.R134R	TTGCCGACAACCT	.	129	49	118	1	.	92	G	97053845	A	G	97053845	2	3	35	1	0	0	0	0	0	0	0	1	5881	262	10	2		2	FHL5	6	97053845	Silent	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	53803170	97053845	74061222	40	4200											
SLC16A10	117247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111540208	111540208	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SLC16A10	NM_018593	exon5	c.C1278T	p.F426F	CGGATTCATGTCT	.	195	82	195	0	.	514	T	111540208	C	T	111540208	2	4	35	1	0	0	0	0	0	0	0	1	14403	825	29	3		3	SLC16A10	6	111540208	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	14486363	111540208	59574859	41	4201											
C6orf170	221322	ucsc.edu;bcgsc.ca	37	6	121642787	121642787	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C6orf170	NM_152730	exon2	c.A309G	p.E103E	TTTAGATTCTTGA	.	180	63	187	2	.	92	C	121642787	T	C	121642787	2	2	35	1	0	0	0	0	0	0	0	1	2344	1490	52	2		2	C6orf170	6	121642787	Silent	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	10102579	121642787	49472280	42	4202											
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137323486	137323486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	IL20RA	NM_014432	exon7	c.A871G	p.I291V	CATAAATCAAAAT	.	73	20	71	0	.	94	C	137323486	T	C	137323486	3	2	35	1	0	0	0	0	1	0	0	0	7668	1435	50	2	794	2	IL20RA	6	137323486	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	15680699	137323486	33791581	43	4203											
HOXA3	3200	broad.mit.edu;mdanderson.org	37	7	27150183	27150183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	HOXA3	NM_030661	exon2	c.A77G	p.Y26C	GCATTATAAGCGA	.	20	5	16	0	.	153	C	27150183	T	C	27150183	3	2	35	1	0	0	0	0	1	0	0	0	7293	1406	49	2	1262	2	HOXA3	7	27150183	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10		27150183	131988480	44	4204											
HOXA6	3203	broad.mit.edu;bcgsc.ca	37	7	27185389	27185389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	HOXA6,brain,glioma,+1	HOXA6	NM_024014	exon2	c.G590A	p.R197H	ATCTGGCGCTCGG	.	67	5	83	0	.	91	T	27185389	C	T	27185389	3	4	35	1	0	0	0	0	1	0	0	0	7296	768	27	1	115	1	HOXA6	7	27185389	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	35206	27185389	131953274	45	4205											
ABCA13	154664	broad.mit.edu;bcgsc.ca	37	7	48319233	48319233	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ABCA13	NM_152701	exon18	c.A8442G	p.K2814K	TGAAAAAGCAATC	.	123	5	129	0	.	521	G	48319233	A	G	48319233	2	3	35	1	0	0	0	0	0	0	0	1	31	69	3	2		2	ABCA13	7	48319233	Silent	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	21133844	48319233	110819430	46	4206											
EIF4H	7458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73609125	73609125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EIF4H	NM_022170	exon6	c.G524T	p.R175L	ACCGGCGAACAGG	.	63	16	72	0	.	90	T	73609125	G	T	73609125	3	4	35	1	0	0	0	0	1	0	0	0	5039	1058	37	1	546	1	EIF4H	7	73609125	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	25289892	73609125	85529538	47	4207											
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77551943	77551943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PHTF2	NM_001127359	exon9	c.A865G	p.T289A	TAGGATACCCAAA	.	60	17	86	0	.	23	G	77551943	A	G	77551943	3	3	35	1	0	0	0	0	1	0	0	0	11863	391	14	2	899	2	PHTF2	7	77551943	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	3942818	77551943	81586720	48	4208											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	88963648	88963648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZNF804B	NM_181646	exon4	c.G1352T	p.G451V	AGGATGGCCACAC	.	98	28	98	0	.	101	T	88963648	G	T	88963648	3	4	35	1	0	0	0	0	1	0	0	0	18168	1203	42	3	1366	3	ZNF804B	7	88963648	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	11411705	88963648	70175015	49	4209											
GNB2	2783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100275413	100275413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GNB2	NM_005273	exon7	c.A469G	p.I157V	AACCAAATCATCA	.	56	16	46	0	.	229	G	100275413	A	G	100275413	3	3	35	1	0	0	0	0	1	0	0	0	6517	101	4	2	491	2	GNB2	7	100275413	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	11311765	100275413	58863250	50	4210											
NDUFA5	4698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123197496	123197496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NDUFA5	NM_005000	exon2	c.G28T	p.G10C	CAAGGCCAGTGGT	.	103	38	97	0	.	90	A	123197496	C	A	123197496	3	1	35	1	0	0	0	0	1	0	0	0	10268	594	21	3	338	3	NDUFA5	7	123197496	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	22922083	123197496	35941167	51	4211											
POT1	25913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	124475442	124475442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	POT1	NM_015450	exon15	c.C1396T	p.L466F	TCGAGAGTTTGCA	.	85	15	85	0	.	227	A	124475442	G	A	124475442	3	1	35	1	0	0	0	0	1	0	0	0	12260	1029	36	3	528	3	POT1	7	124475442	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	1277946	124475442	34663221	52	4212											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	131925877	131925877	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PLXNA4	NM_020911	exon5	c.G1552T	p.E518X	GGCACTCGCCGCA	.	75	31	77	0	.	91	A	131925877	C	A	131925877	4	1	35	1	0	0	0	0	0	1	0	0	12122	893	31	1	4244	1	PLXNA4	7	131925877	Nonsense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	7450435	131925877	27212786	53	4213											
TAS2R38	5726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141673256	141673256	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TAS2R38	NM_176817	exon1	c.T234C	p.L78L	GTGGGTAAGCTGG	.	69	28	74	0	.	92	G	141673256	A	G	141673256	2	3	35	1	0	0	0	0	0	0	0	1	15572	349	13	2		2	TAS2R38	7	141673256	Silent	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	9747379	141673256	17465407	54	4214											
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	144096113	144096113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NOBOX	NM_001080413	exon8	c.C1399A	p.P467T	GCAGTGGCATCAG	.	92	26	133	0	.	69	T	144096113	G	T	144096113	3	4	35	1	0	0	0	0	1	0	0	0	10512	1203	42	3	688	3	NOBOX	7	144096113	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	2422857	144096113	15042550	55	4215											
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	155093275	155093275	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	INSIG1	NM_005542	exon3	c.413-1G>C	.	AAAACAGCTGTTG	.	66	21	99	0	.	90	C	155093275	G	C	155093275	5	2	35	1	0	0	0	0	0	0	1	0	7765	985	34	4	418	4	INSIG1	7	155093275	Splice_Site	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	10997162	155093275	4045388	56	4216											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77766040	77766041	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZFHX4	NM_024721	exon10	c.6883_6884insA	p.E2295fs	GATAATGAAAAAA	.	139	61	94	0	.	98	A	77766041	-	A	77766040	7	5	35	1	0	1	1	0	0	0	0	0	17632	1291	45	0	6917	0	ZFHX4	8	77766040	Frame_Shift_Ins	INS	-	TCGA-CC-A3MC-01A-11D-A22F-10		77766040	68597982	57	4217											
TMEM215	401498	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	32784555	32784555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TMEM215	NM_212558	exon2	c.G374A	p.S125N	CACAAAGCCAGGG	.	38	11	62	0	.	90	A	32784555	G	A	32784555	3	1	35	1	0	0	0	0	1	0	0	0	16135	971	34	3	376	3	TMEM215	9	32784555	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		32784555	108428876	58	4218											
SUSD3	203328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95846880	95846880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SUSD3	NM_145006	exon5	c.G619A	p.G207R	GACCCTGGGATCC	.	36	9	44	0	.	292	A	95846880	G	A	95846880	3	1	35	1	0	0	0	0	1	0	0	0	15406	1348	47	3	637	3	SUSD3	9	95846880	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	63062325	95846880	45366551	59	4219											
SURF4	6836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136234218	136234218	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SURF4	NM_033161	exon2	c.A152T	p.Q51L	TCGCGCTGCTCGC	.	38	8	38	0	.	90	A	136234218	T	A	136234218	3	1	35	1	0	0	0	0	1	0	0	0	15402	1580	55	4	677	4	SURF4	9	136234218	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	40387338	136234218	4979213	60	4220											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137630606	137630606	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	COL5A1	NM_000093	exon11	c.T1446C	p.P482P	CGGACCTCCAGGA	.	62	18	76	0	.	524	C	137630606	T	C	137630606	2	2	35	1	0	0	0	0	0	0	0	1	3696	1538	54	2		2	COL5A1	9	137630606	Silent	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	1396388	137630606	3582825	61	4221											
STAM	8027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	17730065	17730065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	STAM	NM_003473	exon5	c.G337A	p.V113I	CTTATGGTTGAAT	.	81	33	104	0	.	154	A	17730065	G	A	17730065	3	1	35	1	0	0	0	0	1	0	0	0	15247	1261	44	3	355	3	STAM	10	17730065	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		17730065	117804682	62	4222											
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	29818698	29818698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SVIL	NM_021738	exon12	c.C2182T	p.R728C	GACGGCGTAGCCT	.	59	11	58	0	.	96	A	29818698	G	A	29818698	3	1	35	1	0	0	0	0	1	0	0	0	15418	1145	40	1	4570	1	SVIL	10	29818698	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	12088633	29818698	105716049	63	4223											
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	101825001	101825001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CPN1	NM_001308	exon4	c.C703T	p.R235X	CCCCTCGGACCCG	.	33	8	48	0	.	227	A	101825001	G	A	101825001	4	1	35	1	0	0	0	0	0	1	0	0	3809	1124	39	1	697	1	CPN1	10	101825001	Nonsense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	72006303	101825001	33709746	64	4224											
SEC31B	25956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102250534	102250534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SEC31B	NM_015490	exon20	c.A2579G	p.N860S	CTTATATTCTGTG	.	26	5	40	0	.	91	C	102250534	T	C	102250534	3	2	35	1	0	0	0	0	1	0	0	0	13999	1493	52	2	988	2	SEC31B	10	102250534	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	425533	102250534	33284213	65	4225											
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114910795	114910795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TCF7L2	NM_001146283	exon9	c.A986T	p.H329L	CGCTACACACGAC	.	84	19	104	0	.	586	T	114910795	A	T	114910795	3	4	35	1	0	0	0	0	1	0	0	0	15695	159	6	4	1093	4	TCF7L2	10	114910795	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	12660261	114910795	20623952	66	4226											
ACCS	84680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44096174	44096174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ACCS	NM_032592	exon5	c.A432C	p.E144D	GGAGGAAGTGGCC	.	45	13	55	0	.	155	C	44096174	A	C	44096174	3	2	35	1	0	0	0	0	1	0	0	0	133	69	3	5	446	5	ACCS	11	44096174	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10		44096174	90910342	67	4227											
C11orf80	79703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66568539	66568539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	.	NM_024650	exon8	c.A811G	p.I271V	AATGGAATTGCTC	.	91	16	86	0	.	.	G	66568539	A	G	66568539	3	3	35	1	0	0	0	0	1	0	0	0	1664	101	4	2	841	2	C11orf80	11	66568539	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	22472365	66568539	68437977	68	4228											
FOLR2	2350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71932083	71932083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FOLR2	NM_001113535	exon3	c.T320A	p.L107Q	CCAACCTGGGGCC	.	60	24	64	0	.	290	A	71932083	T	A	71932083	3	1	35	1	0	0	0	0	1	0	0	0	5982	1580	55	4	326	4	FOLR2	11	71932083	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	5363544	71932083	63074433	69	4229											
INPPL1	3636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71944787	71944787	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	INPPL1	NM_001567	exon19	c.A2211G	p.K737K	CAAGAAAGGTGAC	.	59	15	80	1	.	660	G	71944787	A	G	71944787	2	3	35	1	0	0	0	0	0	0	0	1	7761	86	3	2		2	INPPL1	11	71944787	Silent	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	12704	71944787	63061729	70	4230											
NOX4	50507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89133229	89133229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NOX4	NM_001143836	exon11	c.C1030G	p.P344A	CACTGGGACAATG	.	118	13	122	0	.	515	C	89133229	G	C	89133229	3	2	35	1	0	0	0	0	1	0	0	0	10558	1174	41	4	738	4	NOX4	11	89133229	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	17188442	89133229	45873287	71	4231											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121036027	121036027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TECTA	NM_005422	exon16	c.G5318T	p.R1773L	CCAACCGAACTTG	.	203	40	209	0	.	225	T	121036027	G	T	121036027	3	4	35	1	0	0	0	0	1	0	0	0	15744	1058	37	1	5380	1	TECTA	11	121036027	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	31902798	121036027	13970489	72	4232											
OR10G7	390265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123909699	123909699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	OR10G7	NM_001004463	exon1	c.G10A	p.A4T	GGGTGGCGTTGGA	.	133	49	186	0	.	70	T	123909699	C	T	123909699	3	4	35	1	0	0	0	0	1	0	0	0	10902	768	27	1	929	1	OR10G7	11	123909699	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	2873672	123909699	11096817	73	4233											
IPO8	10526	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	30789975	30789975	+	Missense_Mutation	SNP	C	C	A	rs61751231	byfrequency;alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	IPO8	NM_006390	exon22	c.G2636T	p.R879I	AGTTGTCTAGTAG	.	71	7	97	0	C|0.992;T|0.008	227	A	30789975	C	A	30789975	3	1	35	1	0	0	0	0	1	0	0	0	7798	913	32	3	493	3	IPO8	12	30789975	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		30789975	103061920	74	4234											
NACA	4666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57113603	57113603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NACA	NM_001113203	exon3	c.C1711A	p.P571T	AAGAAGGGGAATT	.	117	11	128	0	.	254	T	57113603	G	T	57113603	3	4	35	1	0	0	0	0	1	0	0	0	10133	1232	43	3	4553	3	NACA	12	57113603	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	26323628	57113603	76738292	75	4235											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	105519876	105519876	+	Nonsense_Mutation	SNP	C	C	G	rs190039477	alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	KIAA1033	NM_015275	exon11	c.C881G	p.S294X	TTCGGTCAATTTT	.	113	38	161	0	C|0.999;T|0.000	91	G	105519876	C	G	105519876	4	3	35	1	0	0	0	0	0	1	0	0	8206	838	29	4	923	4	KIAA1033	12	105519876	Nonsense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	48406273	105519876	28332019	76	4236											
DNAH10	196385	broad.mit.edu;bcgsc.ca	37	12	124383209	124383209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	DNAH10	NM_207437	exon55	c.A9134G	p.K3045R	AGTGCAAGCGTCT	.	35	4	44	0	.	95	G	124383209	A	G	124383209	3	3	35	1	0	0	0	0	1	0	0	0	4598	72	3	2	9352	2	DNAH10	12	124383209	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	18863333	124383209	9468686	77	4237											
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113960890	113960890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LAMP1	NM_005561	exon2	c.C152T	p.S51L	CCTTCTCAGTGAA	.	83	48	79	0	.	514	T	113960890	C	T	113960890	3	4	35	1	0	0	0	0	1	0	0	0	8617	838	29	3	158	3	LAMP1	13	113960890	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		113960890	1208988	78	4238											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33936690	33936690	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	RYR3	NM_001243996	exon28	c.C3735A	p.V1245V	GTTTGTCAACGTG	.	105	44	77	0	.	520	A	33936690	C	A	33936690	2	1	35	1	0	0	0	0	0	0	0	1	13770	813	29	3		3	RYR3	15	33936690	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		33936690	68594702	79	4239											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	40660976	40660976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	DISP2	NM_033510	exon8	c.A2663T	p.Q888L	GCACCCAGGACCT	.	40	12	45	0	.	92	T	40660976	A	T	40660976	3	4	35	1	0	0	0	0	1	0	0	0	4540	188	7	4	2693	4	DISP2	15	40660976	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	6724286	40660976	61870416	80	4240											
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43815176	43815176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MAP1A	NM_002373	exon4	c.C1505T	p.P502L	CTGAGCCCCAGAC	.	118	40	120	0	.	141	T	43815176	C	T	43815176	3	4	35	1	0	0	0	0	1	0	0	0	9227	623	22	3	1507	3	MAP1A	15	43815176	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	3154200	43815176	58716216	81	4241											
GCOM1	145781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57953696	57953696	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GCOM1	NM_001018090	exon11	c.C1168G	p.Q390E	ATACTGCAGCTTT	.	157	38	135	0	.	91	G	57953696	C	G	57953696	3	3	35	1	0	0	0	0	1	0	0	0	6304	711	25	4	1210	4	GCOM1	15	57953696	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	14138520	57953696	44577696	82	4242											
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59502718	59502718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MYO1E	NM_004998	exon13	c.A1357C	p.K453Q	CCACTTTGTTCTC	.	97	32	119	0	.	514	G	59502718	T	G	59502718	3	3	35	1	0	0	0	0	1	0	0	0	10072	1821	63	5	2033	5	MYO1E	15	59502718	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	1549022	59502718	43028674	83	4243											
FOXB1	27023	broad.mit.edu;bcgsc.ca	37	15	60297165	60297165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FOXB1	NM_012182	exon2	c.G3T	p.M1I	GAAGATGCCTCGG	.	57	19	45	1	.	227	T	60297165	G	T	60297165	3	4	35	1	0	0	0	0	1	0	0	0	5992	1319	46	3	5	3	FOXB1	15	60297165	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	794447	60297165	42234227	84	4244											
CLPX	10845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	65443162	65443162	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CLPX	NM_006660	exon14	c.A1901G	p.X634X	ACAGTTTAGCTGT	.	33	11	57	0	.	90	C	65443162	T	C	65443162	2	2	35	1	0	0	0	0	0	0	0	1	3556	1761	61	2		2	CLPX	15	65443162	Silent	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10	5145997	65443162	37088230	85	4245											
NEIL1	79661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75641492	75641492	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NEIL1	NM_001256552	exon2	c.C504T	p.S168S	CATGTCCGGCTCT	.	15	5	17	0	.	659	T	75641492	C	T	75641492	2	4	35	1	0	0	0	0	0	0	0	1	10318	639	23	1		1	NEIL1	15	75641492	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	10198330	75641492	26889900	86	4246											
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2158258	2158258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PKD1	NM_000296	exon15	c.A6910G	p.T2304A	CCTGTGTCGAAGC	.	21	8	28	0	.	91	C	2158258	T	C	2158258	3	2	35	1	0	0	0	0	1	0	0	0	11963	1667	58	2	6129	2	PKD1	16	2158258	Missense_Mutation	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10		2158258	88196495	87	4247											
BCKDK	10295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31121012	31121012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	BCKDK	NM_005881	exon4	c.283delC	p.Q95fs	TACCTGCAGCAAG	.	77	20	82	0	.	765	-	31121012	C	-	31121012	7	5	35	1	0	1	0	1	0	0	0	0	1361	711	25	0	293	0	BCKDK	16	31121012	Frame_Shift_Del	DEL	C	TCGA-CC-A3MC-01A-11D-A22F-10	28962754	31121012	59233741	88	4248											
PKD1L2	114780	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	81190514	81190514	+	RNA	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PKD1L2	.	.	.	.	CCAGCACGTAGAC	.	42	25	57	0	.	92	T	81190514	C	T	81190514	1	4	35	0	1	0	0	0	0	0	0	0	11965	536	19	1		1	PKD1L2	16	81190514	RNA	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	50069502	81190514	9164239	89	4249											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89352532	89352532	+	Silent	SNP	C	C	T	rs149525788	alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ANKRD11	NM_001256183	exon8	c.G807A	p.T269T	CAGCGGCGTCTCG	.	22	10	32	0	C|1.000;G|0.000	139	T	89352532	C	T	89352532	2	4	35	1	0	0	0	0	0	0	0	1	639	755	27	1		1	ANKRD11	16	89352532	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	8162018	89352532	1002221	90	4250											
PSMB6	5694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4701710	4701710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PSMB6	NM_002798	exon6	c.C713A	p.P238H	TACCACCCGCCTG	.	37	14	57	0	.	92	A	4701710	C	A	4701710	3	1	35	1	0	0	0	0	1	0	0	0	12681	623	22	3	735	3	PSMB6	17	4701710	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		4701710	76493500	91	4251											
EIF5A	1984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7213030	7213030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EIF5A	NM_001143760	exon2	c.C166T	p.R56C	GCATTACGTAAGA	.	26	17	52	0	.	90	T	7213030	C	T	7213030	3	4	35	1	0	0	0	0	1	0	0	0	5041	536	19	1	172	1	EIF5A	17	7213030	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	2511320	7213030	73982180	92	4252											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	13980195	13980195	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	COX10	NM_001303	exon3	c.A321G	p.L107L	CAGCCTATCTTTG	.	102	44	152	0	.	226	G	13980195	A	G	13980195	2	3	35	1	0	0	0	0	0	0	0	1	3762	436	16	2		2	COX10	17	13980195	Silent	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	6767165	13980195	67215015	93	4253											
DGKE	8526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	54925299	54925299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	DGKE	NM_003647	exon5	c.A761G	p.K254R	TAACTAAAACTCC	.	52	12	53	0	.	289	G	54925299	A	G	54925299	3	3	35	1	0	0	0	0	1	0	0	0	4468	14	1	2	775	2	DGKE	17	54925299	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	40945104	54925299	26269911	94	4254											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57758348	57758348	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CLTC	NM_004859	exon19	c.G2995C	p.D999H	ACTGCAGACCTTC	.	136	43	134	0	.	835	C	57758348	G	C	57758348	3	2	35	1	0	0	0	0	1	0	0	0	3566	942	33	4	3069	4	CLTC	17	57758348	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	2833049	57758348	23436862	95	4255											
TANC2	26115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	61476233	61476233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TANC2	NM_025185	exon17	c.C3067T	p.R1023X	GTAGAGCGAGCAC	.	136	43	126	0	.	24	T	61476233	C	T	61476233	4	4	35	1	0	0	0	0	0	1	0	0	15542	760	27	1	3133	1	TANC2	17	61476233	Nonsense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	3717885	61476233	19718977	96	4256											
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76183502	76183502	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	AFMID	NM_001145526	exon1	c.G51A	p.K17K	GAAGAAGATGTCT	.	47	20	49	0	.	136	A	76183502	G	A	76183502	2	1	35	1	0	0	0	0	0	0	0	1	362	933	33	3		3	AFMID	17	76183502	Silent	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10	14707269	76183502	5011708	97	4257											
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2891529	2891529	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EMILIN2	NM_032048	exon4	c.C1404T	p.C468C	ACATTGCTTTTAC	.	99	42	89	0	.	93	T	2891529	C	T	2891529	2	4	35	1	0	0	0	0	0	0	0	1	5094	805	28	3		3	EMILIN2	18	2891529	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10		2891529	75185719	98	4258											
CYB5A	1528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	71959015	71959027	+	Frame_Shift_Del	DEL	GTGGTGCAGGATC	GTGGTGCAGGATC	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	GTGGTGCAGGATC	GTGGTGCAGGATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CYB5A	NM_148923	exon1	c.84_96del	p.28_32del	CACCTTGTGGTGC	.	61	12	53	0	.	90	-	71959027	GTGGTGCAGGATC	-	71959015	7	5	35	1	0	1	0	1	0	0	0	0	4122	1368	48	0	341	0	CYB5A	18	71959015	Frame_Shift_Del	DEL	GTGGTGCAGGATC	TCGA-CC-A3MC-01A-11D-A22F-10	69067486	71959015	6118233	99	4259											
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5931460	5931460	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	RANBP3	NM_007322	exon8	c.A648G	p.A216A	TCTCCATGCAGCA	.	39	19	66	0	.	272	C	5931460	T	C	5931460	2	2	35	1	0	0	0	0	0	0	0	1	13029	1451	51	2		2	RANBP3	19	5931460	Silent	SNP	T	TCGA-CC-A3MC-01A-11D-A22F-10		5931460	53197523	100	4260											
YIPF2	78992	ucsc.edu;bcgsc.ca	37	19	11034084	11034084	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	YIPF2	NM_024029	exon10	c.835-1G>A	.	GTACAACTGCACA	.	39	4	35	0	.	90	T	11034084	C	T	11034084	5	4	35	1	0	0	0	0	0	0	1	0	17475	579	20	3	120	3	YIPF2	19	11034084	Splice_Site	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	5102624	11034084	48094899	101	4261											
PKN1	5585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14574553	14574553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PKN1	NM_213560	exon10	c.A1512C	p.Q504H	GCAGCAAGGTGAG	.	97	32	95	0	.	1481	C	14574553	A	C	14574553	3	2	35	1	0	0	0	0	1	0	0	0	11979	86	3	5	1575	5	PKN1	19	14574553	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	3540469	14574553	44554430	102	4262											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15300099	15300099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NOTCH3	NM_000435	exon7	c.G1177C	p.D393H	ACTCGTCCACATC	.	33	12	41	0	.	855	G	15300099	C	G	15300099	3	3	35	1	0	0	0	0	1	0	0	0	10550	855	30	4	5896	4	NOTCH3	19	15300099	Missense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	725546	15300099	43828884	103	4263											
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22575694	22575694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZNF98	NM_001098626	exon4	c.T343A	p.C115S	GTCCACATTTTTT	.	284	103	325	1	.	24	T	22575694	A	T	22575694	3	4	35	1	0	0	0	0	1	0	0	0	18200	217	8	4	1379	4	ZNF98	19	22575694	Missense_Mutation	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	7275595	22575694	36553289	104	4264											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38633246	38633246	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SIPA1L3	NM_015073	exon12	c.A3429G	p.V1143V	CACAGTATCACCA	.	27	7	32	0	.	91	G	38633246	A	G	38633246	2	3	35	1	0	0	0	0	0	0	0	1	14331	436	16	2		2	SIPA1L3	19	38633246	Silent	SNP	A	TCGA-CC-A3MC-01A-11D-A22F-10	16057552	38633246	20495737	105	4265											
PRMT1	3276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	50187272	50187272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PRMT1	NM_001536	exon6	c.C501A	p.C167X	CTACTGCCTCTTC	.	87	22	90	0	.	91	A	50187272	C	A	50187272	4	1	35	1	0	0	0	0	0	1	0	0	12535	747	26	3	523	3	PRMT1	19	50187272	Nonsense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	11554026	50187272	8941711	106	4266											
GGT7	2686	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	33451284	33451284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GGT7	NM_178026	exon2	c.C237G	p.S79R	GTCTTGGCTGCCC	.	24	7	33	0	.	91	C	33451284	G	C	33451284	3	2	35	1	0	0	0	0	1	0	0	0	6364	1194	42	4	1807	4	GGT7	20	33451284	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		33451284	29574236	107	4267											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18374289	18374289	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MICAL3	NM_015241	exon12	c.C1656G	p.A552A	ACAAAGGGCCAAG	.	170	56	169	0	.	68	C	18374289	G	C	18374289	2	2	35	1	0	0	0	0	0	0	0	1	9571	1219	43	4		4	MICAL3	22	18374289	Silent	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		18374289	32930277	108	4268											
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	40662452	40662452	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TNRC6B	NM_001162501	exon5	c.C2218T	p.Q740X	CCCAATCAAGGAT	.	112	54	49	0	.	22	T	40662452	C	T	40662452	4	4	35	1	0	0	0	0	0	1	0	0	16338	827	29	3	2357	3	TNRC6B	22	40662452	Nonsense_Mutation	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	22288163	40662452	10642114	109	4269											
CD99	4267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2644348	2644348	+	Missense_Mutation	SNP	G	G	A	rs188016181		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CD99	NM_002414	exon8	c.G409A	p.A137T	GTGGTCGCCGTGG	.	81	12	101	0	G|1.000;A|0.000	40	A	2644348	G	A	2644348	3	1	35	1	0	0	0	0	1	0	0	0	3050	1087	38	1	439	1	CD99	23	2644348	Missense_Mutation	SNP	G	TCGA-CC-A3MC-01A-11D-A22F-10		2644348	152626212	110	4270											
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153224782	153224782	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	HCFC1	NM_005334	exon9	c.G1605T	p.T535T	CCTCACCGTTCCC	.	43	26	45	0	.	132	A	153224782	C	A	153224782	2	1	35	1	0	0	0	0	0	0	0	1	6991	666	23	1		1	HCFC1	23	153224782	Silent	SNP	C	TCGA-CC-A3MC-01A-11D-A22F-10	150580434	153224782	2045778	111	4271											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11298100	11298100	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MTOR	NM_004958	exon13	c.G2008C	p.D670H	GAATGTCAGGGTC	.	160	50	161	0	.	1439	G	11298100	C	G	11298100	3	3	36	1	0	0	0	0	1	0	0	0	9954	826	29	4	5825	4	MTOR	1	11298100	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		11298100	237952521	1	4272											
PLEKHM2	23207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16060357	16060357	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLEKHM2	NM_015164	exon20	c.C2988T	p.S996S	CTTGAGCCTCATC	.	182	50	265	0	.	23	T	16060357	C	T	16060357	2	4	36	1	0	0	0	0	0	0	0	1	12081	738	26	3		3	PLEKHM2	1	16060357	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	4762257	16060357	233190264	2	4273											
PTBP2	58155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97250800	97250800	+	Silent	SNP	A	A	G	rs142048957	byfrequency;alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PTBP2	NM_021190	exon8	c.A894G	p.T298T	GGAGACATCCCTC	.	74	21	81	1	A|1.000;T|0.000	90	G	97250800	A	G	97250800	2	3	36	1	0	0	0	0	0	0	0	1	12726	204	8	2		2	PTBP2	1	97250800	Silent	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	81190443	97250800	151999821	3	4274											
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158059547	158059547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	KIRREL	NM_018240	exon10	c.T1211C	p.V404A	ATGCTGTGAGGGG	.	228	43	187	0	.	91	C	158059547	T	C	158059547	3	2	36	1	0	0	0	0	1	0	0	0	8324	1696	59	2	1249	2	KIRREL	1	158059547	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	60808747	158059547	91191074	4	4275											
ATP1A2	477	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160104376	160104376	+	Missense_Mutation	SNP	C	C	T	rs150784486	alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ATP1A2	NM_000702	exon14	c.C1930T	p.R644W	GCAGCCCGGCTCA	.	233	62	194	2	C|1.000;A|0.000	518	T	160104376	C	T	160104376	3	4	36	1	0	0	0	0	1	0	0	0	1129	643	23	1	1984	1	ATP1A2	1	160104376	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	2044829	160104376	89146245	5	4276											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767459	181767459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CACNA1E	NM_001205293	exon48	c.C6431T	p.P2144L	CCATCCCCTCTGT	.	34	6	24	0	.	95	T	181767459	C	T	181767459	3	4	36	1	0	0	0	0	1	0	0	0	2542	623	22	3	6488	3	CACNA1E	1	181767459	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	21663083	181767459	67483162	6	4277											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185992215	185992215	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	HMCN1	NM_031935	exon36	c.T5679C	p.A1893A	AGATGCTGGCAGA	.	150	28	142	0	.	113	C	185992215	T	C	185992215	2	2	36	1	0	0	0	0	0	0	0	1	7220	1567	55	2		2	HMCN1	1	185992215	Silent	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	4224756	185992215	63258406	7	4278											
SERTAD4	56256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210412936	210412936	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SERTAD4	NM_019605	exon3	c.A274T	p.S92C	CCACTCAGCAGCT	.	186	65	140	0	.	92	T	210412936	A	T	210412936	3	4	36	1	0	0	0	0	1	0	0	0	14123	188	7	4	280	4	SERTAD4	1	210412936	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	24420721	210412936	38837685	8	4279											
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	223176572	223176572	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DISP1	NM_032890	exon10	c.C1833A	p.T611T	CGTCACCAGTTTT	.	177	14	150	0	.	68	A	223176572	C	A	223176572	2	1	36	1	0	0	0	0	0	0	0	1	4539	581	21	3		3	DISP1	1	223176572	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	12763636	223176572	26074049	9	4280											
OR2T2	401992	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248616426	248616426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	OR2T2	NM_001004136	exon1	c.G328A	p.G110R	CTGATTGGAGGGG	.	1212	57	915	1	.	23	A	248616426	G	A	248616426	3	1	36	1	0	0	0	0	1	0	0	0	11020	1349	47	3	330	3	OR2T2	1	248616426	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	25439854	248616426	634195	10	4281											
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	28761221	28761221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLB1	NM_001170585	exon10	c.G624A	p.M208I	GCTGATGGGGGTG	.	33	13	42	0	.	141	A	28761221	G	A	28761221	3	1	36	1	0	0	0	0	1	0	0	0	12024	1348	47	3	662	3	PLB1	2	28761221	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10		28761221	214438152	11	4282											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	149226010	149226010	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MBD5	NM_018328	exon9	c.T498C	p.N166N	TAAGAATCCTTTC	.	131	9	105	0	.	95	C	149226010	T	C	149226010	2	2	36	1	0	0	0	0	0	0	0	1	9347	1432	50	2		2	MBD5	2	149226010	Silent	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	120464789	149226010	93973363	12	4283											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196759699	196759699	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH7	NM_018897	exon31	c.4896+1G>T	.	TACTTGCCTTTTC	.	205	46	195	0	.	102	A	196759699	C	A	196759699	5	1	36	1	0	0	0	0	0	0	1	0	4606	753	26	3	7321	3	DNAH7	2	196759699	Splice_Site	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	47533689	196759699	46439674	13	4284											
ALPPL2	251	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233272463	233272463	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ALPPL2	NM_031313	exon4	c.C460A	p.R154R	ATGAATCGGGCCA	.	308	66	356	2	.	91	A	233272463	C	A	233272463	2	1	36	1	0	0	0	0	0	0	0	1	549	875	31	1		1	ALPPL2	2	233272463	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	36512764	233272463	9926910	14	4285											
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39433444	39433444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SLC25A38	NM_017875	exon5	c.T557G	p.L186R	CTCTCCTTCGAGA	.	184	31	156	0	.	90	G	39433444	T	G	39433444	3	3	36	1	0	0	0	0	1	0	0	0	14502	1609	56	5	575	5	SLC25A38	3	39433444	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10		39433444	158588986	15	4286											
DZIP3	9666	broad.mit.edu;mdanderson.org	37	3	108363329	108363329	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DZIP3	NM_014648	exon14	c.G1460A	p.W487X	AAGGATGGAATAT	.	205	14	179	1	.	91	A	108363329	G	A	108363329	4	1	36	1	0	0	0	0	0	1	0	0	4865	1357	47	3	1510	3	DZIP3	3	108363329	Nonsense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	68929885	108363329	89659101	16	4287											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113092280	113092280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	WDR52	NM_001164496	exon18	c.C2422T	p.P808S	GGATGGGATTGTC	.	89	9	99	0	.	90	A	113092280	G	A	113092280	3	1	36	1	0	0	0	0	1	0	0	0	17301	1174	41	3	3229	3	WDR52	3	113092280	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	4728951	113092280	84930150	17	4288											
DNAJB8	165721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128181964	128181964	+	Missense_Mutation	SNP	G	G	A	rs142768827		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAJB8	NM_153330	exon3	c.C125T	p.A42V	TTCTCCGCCTCCT	.	209	27	226	1	G|1.000;A|0.000	226	A	128181964	G	A	128181964	3	1	36	1	0	0	0	0	1	0	0	0	4626	1087	38	1	577	1	DNAJB8	3	128181964	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	15089684	128181964	69840466	18	4289											
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	131208896	131208896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MRPL3	NM_007208	exon5	c.G497A	p.R166Q	AGTTCCCGGTAAA	.	64	12	42	0	.	90	T	131208896	C	T	131208896	3	4	36	1	0	0	0	0	1	0	0	0	9793	652	23	1	573	1	MRPL3	3	131208896	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	3026932	131208896	66813534	19	4290											
DRD5	1816	ucsc.edu;bcgsc.ca	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DRD5	NM_000798	exon1	c.T964C	p.C322R	CCTTTCTGCAGTG	.	82	12	70	0	T|0.500;C|0.500	91	C	9784617	T	C	9784617	3	2	36	1	0	0	0	0	1	0	0	0	4760	1580	55	2	966	2	DRD5	4	9784617	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10		9784617	181369659	20	4291											
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467871	66467871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EPHA5	NM_004439	exon3	c.C398T	p.T133I	CGCAGGGTAAATT	.	41	7	43	0	.	1430	A	66467871	G	A	66467871	3	1	36	1	0	0	0	0	1	0	0	0	5170	1261	44	3	2779	3	EPHA5	4	66467871	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	56683254	66467871	124686405	21	4292											
ATOH1	474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	94750441	94750441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ATOH1	NM_005172	exon1	c.G364T	p.V122L	GGGCCGGTGAAAG	.	110	12	132	0	.	90	T	94750441	G	T	94750441	3	4	36	1	0	0	0	0	1	0	0	0	1112	1261	44	3	366	3	ATOH1	4	94750441	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	28282570	94750441	96403835	22	4293											
ANKRD34B	340120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79855469	79855469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ANKRD34B	NM_001004441	exon5	c.T370C	p.Y124H	TAGCATAAACAAG	.	128	33	145	0	.	69	G	79855469	A	G	79855469	3	3	36	1	0	0	0	0	1	0	0	0	663	362	13	2	1178	2	ANKRD34B	5	79855469	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10		79855469	101059791	23	4294											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114462308	114462308	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRIM36	NM_018700	exon10	c.G2079A	p.V693V	ACAGTCCACTTGG	.	129	31	120	0	.	725	T	114462308	C	T	114462308	2	4	36	1	0	0	0	0	0	0	0	1	16507	581	21	3		3	TRIM36	5	114462308	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	34606839	114462308	66452952	24	4295											
REEP2	51308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137780443	137780443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	REEP2	NM_016606	exon5	c.G304C	p.E102Q	CCATAGGAGATCG	.	109	24	121	0	.	90	C	137780443	G	C	137780443	3	2	36	1	0	0	0	0	1	0	0	0	13205	1188	41	4	322	4	REEP2	5	137780443	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	23318135	137780443	43134817	25	4296											
GRM6	2916	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178413890	178413890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRM6	NM_000843	exon7	c.C1449A	p.S483R	GCCACTGCTGGCA	.	101	23	107	1	.	588	T	178413890	G	T	178413890	3	4	36	1	0	0	0	0	1	0	0	0	6801	1310	46	3	1200	3	GRM6	5	178413890	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	40633447	178413890	2501370	26	4297											
EDN1	1906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12294540	12294540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EDN1	NM_001955	exon4	c.A436G	p.K146E	AAAGGAAAAGACT	.	396	117	419	0	.	91	G	12294540	A	G	12294540	3	3	36	1	0	0	0	0	1	0	0	0	4916	15	1	2	450	2	EDN1	6	12294540	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10		12294540	158820527	27	4298											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	38891940	38891940	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH8	NM_001206927	exon73	c.10962+2T>C	.	CAACTGTAAGTTT	.	44	17	44	0	.	615	C	38891940	T	C	38891940	5	2	36	1	0	0	0	0	0	0	1	0	4607	1652	57	2	10587	2	DNAH8	6	38891940	Splice_Site	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	26597400	38891940	132223127	28	4299											
LRFN2	57497	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	40360440	40360440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LRFN2	NM_020737	exon3	c.A1612G	p.I538V	CCCCGATGACCAG	.	72	17	86	1	.	93	C	40360440	T	C	40360440	3	2	36	1	0	0	0	0	1	0	0	0	8938	1464	51	2	761	2	LRFN2	6	40360440	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	1468500	40360440	130754627	29	4300											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56391319	56391319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DST	NM_015548	exon50	c.T10100G	p.L3367R	TCATTAAGGGAGT	.	108	33	110	0	.	523	C	56391319	A	C	56391319	3	2	36	1	0	0	0	0	1	0	0	0	4783	72	3	5	5555	5	DST	6	56391319	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	16030879	56391319	114723748	30	4301											
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39379463	39379463	+	Missense_Mutation	SNP	C	C	A	rs150071017	byfrequency;alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	POU6F2	NM_007252	exon6	c.C734A	p.A245E	AACAGGCGCCTCA	.	75	14	59	0	C|0.994;T|0.006	90	A	39379463	C	A	39379463	3	1	36	1	0	0	0	0	1	0	0	0	12285	768	27	1	752	1	POU6F2	7	39379463	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		39379463	119759200	31	4302											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47886599	47886599	+	Silent	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PKD1L1	NM_138295	exon32	c.T5031G	p.A1677A	TGCCTTAGCTAAA	.	181	52	193	0	.	145	C	47886599	A	C	47886599	2	2	36	1	0	0	0	0	0	0	0	1	11964	407	15	5		5	PKD1L1	7	47886599	Silent	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	8507136	47886599	111252064	32	4303											
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	38396047	38396047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ALDH1B1	NM_000692	exon2	c.G302T	p.R101L	CTGAGCGGGGCCG	.	90	28	79	0	.	227	T	38396047	G	T	38396047	3	4	36	1	0	0	0	0	1	0	0	0	493	1116	39	1	304	1	ALDH1B1	9	38396047	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10		38396047	102817384	33	4304											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73426150	73426150	+	Silent	SNP	C	C	A	rs200079844	alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRPM3	NM_001007470	exon7	c.G525T	p.P175P	GAAAAACGGCAGG	.	144	30	122	0	C|0.999;T|0.000	521	A	73426150	C	A	73426150	2	1	36	1	0	0	0	0	0	0	0	1	16584	523	19	1		1	TRPM3	9	73426150	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	35030103	73426150	67787281	34	4305											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113137703	113137703	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SVEP1	NM_153366	exon46	c.G10545A	p.V3515V	AGGGGCCACACAG	.	173	28	180	0	.	75	T	113137703	C	T	113137703	2	4	36	1	0	0	0	0	0	0	0	1	15417	581	21	3		3	SVEP1	9	113137703	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	39711553	113137703	28075728	35	4306											
SUSD1	64420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114911630	114911630	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SUSD1	NM_022486	exon3	c.A267T	p.T89T	GCAAGATGTGTGG	.	118	22	141	1	.	90	A	114911630	T	A	114911630	2	1	36	1	0	0	0	0	0	0	0	1	15404	1451	51	4		4	SUSD1	9	114911630	Silent	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	1773927	114911630	26301801	36	4307											
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71700763	71700763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	COL13A1	NM_001130103	exon34	c.G1865A	p.G622D	TGGACGGCAGGCC	.	73	21	86	0	.	91	A	71700763	G	A	71700763	3	1	36	1	0	0	0	0	1	0	0	0	3670	1203	42	3	1999	3	COL13A1	10	71700763	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10		71700763	63833984	37	4308											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115987675	115987675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TDRD1	NM_198795	exon24	c.T3410C	p.M1137T	AAAAGATGTATAG	.	42	10	51	0	.	90	C	115987675	T	C	115987675	3	2	36	1	0	0	0	0	1	0	0	0	15727	1464	51	2	3500	2	TDRD1	10	115987675	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	44286912	115987675	19547072	38	4309											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1262923	1262923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_002458	exon31	c.G4813A	p.G1605R	TGCAGGGGACGTG	.	102	24	132	0	.	.	A	1262923	G	A	1262923	3	1	36	1	0	0	0	0	1	0	0	0	9979	1233	43	3	4944	3	MUC5B	11	1262923	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10		1262923	133743593	39	4310											
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67166225	67166225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PPP1CA	NM_001008709	exon6	c.A883G	p.S295G	CCACACTCATCAT	.	76	5	104	0	.	659	C	67166225	T	C	67166225	3	2	36	1	0	0	0	0	1	0	0	0	12349	1551	54	2	150	2	PPP1CA	11	67166225	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	65903302	67166225	67840291	40	4311											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123483491	123483491	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRAMD1B	NM_020716	exon14	c.C1513A	p.R505R	CGCTATCGAAAAC	.	122	31	107	0	.	69	A	123483491	C	A	123483491	2	1	36	1	0	0	0	0	0	0	0	1	6748	876	31	1		1	GRAMD1B	11	123483491	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	56317266	123483491	11523025	41	4312											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41966919	41966919	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PDZRN4	NM_001164595	exon10	c.C2338G	p.Q780E	GCCACCCAGTCCT	.	136	21	114	0	.	296	G	41966919	C	G	41966919	3	3	36	1	0	0	0	0	1	0	0	0	11710	595	21	4	2449	4	PDZRN4	12	41966919	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		41966919	91884976	42	4313											
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	56478884	56478884	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ERBB3	NM_001982	exon3	c.A340T	p.K114X	GATGGGAAGTTTG	.	141	16	128	0	.	1403	T	56478884	A	T	56478884	4	4	36	1	0	0	0	0	0	1	0	0	5208	247	9	4	350	4	ERBB3	12	56478884	Nonsense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	14511965	56478884	77373011	43	4314											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72021636	72021636	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZFC3H1	NM_144982	exon21	c.A4025T	p.N1342I	GTCTCATTTGTAA	.	76	11	91	0	.	138	A	72021636	T	A	72021636	3	1	36	1	0	0	0	0	1	0	0	0	17630	1493	52	4	2004	4	ZFC3H1	12	72021636	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10	15542752	72021636	61830259	44	4315											
RABGGTA	5875	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24737122	24737122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_004581	exon12	c.C1190A	p.P397H	AGCAGGGGGTCCA	.	158	25	189	1	.	.	T	24737122	G	T	24737122	3	4	36	1	0	0	0	0	1	0	0	0	12967	1232	43	3	533	3	RABGGTA	14	24737122	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10		24737122	82612418	45	4316											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	31318460	31318460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRPM1	NM_001252020	exon26	c.G3562A	p.D1188N	CCTCGTCGCTAAG	.	38	5	43	0	.	94	T	31318460	C	T	31318460	3	4	36	1	0	0	0	0	1	0	0	0	16582	884	31	1	1374	1	TRPM1	15	31318460	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		31318460	71212932	46	4317											
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40062634	40062634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	FSIP1	NM_152597	exon3	c.T304C	p.C102R	CTGAACACTCAGA	.	42	7	45	0	.	517	G	40062634	A	G	40062634	3	3	36	1	0	0	0	0	1	0	0	0	6074	159	6	2	1481	2	FSIP1	15	40062634	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	8744174	40062634	62468758	47	4318											
MGA	23269	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42059142	42059142	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MGA	NM_001164273	exon24	c.C8862A	p.L2954L	TGGCCTCCCTGCA	.	92	13	80	2	.	522	A	42059142	C	A	42059142	2	1	36	1	0	0	0	0	0	0	0	1	9540	842	30	3		3	MGA	15	42059142	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	1996508	42059142	60472250	48	4319											
PLA2G4E	123745	hgsc.bcm.edu;bcgsc.ca	37	15	42285005	42285005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_001206670	exon13	c.G1400A	p.S467N	TCCTGGCTGCGCT	.	74	7	114	0	.	.	T	42285005	C	T	42285005	3	4	36	1	0	0	0	0	1	0	0	0	12005	797	28	3	1238	3	PLA2G4E	15	42285005	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	225863	42285005	60246387	49	4320											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	396352	396352	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AXIN1	NM_181050	exon2	c.674delG	p.S225fs	CCAGAGCTCTGGT	.	56	10	60	0	.	684	-	396352	C	-	396352	7	5	36	1	0	1	0	1	0	0	0	0	1236	797	28	0	1954	0	AXIN1	16	396352	Frame_Shift_Del	DEL	C	TCGA-CC-A5UC-01A-11D-A28X-10		396352	89958401	50	4321											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	4033250	4033250	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ADCY9	NM_001116	exon7	c.C2502T	p.S834S	CGCGAGGGACAGC	.	40	13	67	0	.	139	A	4033250	G	A	4033250	2	1	36	1	0	0	0	0	0	0	0	1	301	1219	43	3		3	ADCY9	16	4033250	Silent	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	3636898	4033250	86321503	51	4322											
ZNF267	10308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31926823	31926823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF267	NM_003414	exon4	c.G1253A	p.R418H	CCTTTCGCTGTAG	.	34	11	35	0	.	138	A	31926823	G	A	31926823	3	1	36	1	0	0	0	0	1	0	0	0	17803	1087	38	1	1267	1	ZNF267	16	31926823	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	27893573	31926823	58427930	52	4323											
ACSF3	197322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89180877	89180877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ACSF3	NM_174917	exon6	c.A1108G	p.T370A	CTGACCACTGCCG	.	53	17	87	0	.	68	G	89180877	A	G	89180877	3	3	36	1	0	0	0	0	1	0	0	0	176	159	6	2	1122	2	ACSF3	16	89180877	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	57254054	89180877	1173876	53	4324											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79094590	79094590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AATK	NM_001080395	exon11	c.G3146A	p.G1049D	CCAGAGCCTTGTG	.	33	5	47	0	.	933	T	79094590	C	T	79094590	3	4	36	1	0	0	0	0	1	0	0	0	26	739	26	3	994	3	AATK	17	79094590	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		79094590	2100620	54	4325											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu	37	19	22156012	22156012	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF208	NM_007153	exon4	c.C1824A	p.P608P	TTTGTAGGGTTTC	.	28	5	30	0	.	7	T	22156012	G	T	22156012	2	4	36	1	0	0	0	0	0	0	0	1	17763	987	35	3		3	ZNF208	19	22156012	Silent	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10		22156012	36972971	55	4326											
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33493213	33493213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	RHPN2	NM_033103	exon9	c.G1045A	p.A349T	GGTGGGCCTTCAC	.	192	22	194	0	.	516	T	33493213	C	T	33493213	3	4	36	1	0	0	0	0	1	0	0	0	13351	739	26	3	1043	3	RHPN2	19	33493213	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10	11337201	33493213	25635770	56	4327											
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54756260	54756260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LILRB5	NM_001081442	exon11	c.C1545A	p.S515R	AACTGGGCTGGCC	.	55	10	77	0	.	92	T	54756260	G	T	54756260	3	4	36	1	0	0	0	0	1	0	0	0	8794	1194	42	3	242	3	LILRB5	19	54756260	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	21263047	54756260	4372723	57	4328											
ZNF551	90233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58198623	58198623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF551	NM_138347	exon3	c.G980C	p.R327T	ACCAGAGACGTCA	.	75	23	77	0	.	91	C	58198623	G	C	58198623	3	2	36	1	0	0	0	0	1	0	0	0	17980	942	33	4	942	4	ZNF551	19	58198623	Missense_Mutation	SNP	G	TCGA-CC-A5UC-01A-11D-A28X-10	3442363	58198623	930360	58	4329											
CST8	10047	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23472345	23472345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CST8	NM_005492	exon2	c.T41A	p.I14N	TCACCATTCCCCT	.	118	16	106	2	.	90	A	23472345	T	A	23472345	3	1	36	1	0	0	0	0	1	0	0	0	3978	1493	52	4	43	4	CST8	20	23472345	Missense_Mutation	SNP	T	TCGA-CC-A5UC-01A-11D-A28X-10		23472345	39553175	59	4330											
PCK1	5105	hgsc.bcm.edu;bcgsc.ca	37	20	56137828	56137828	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PCK1	NM_002591	exon4	c.483delG	p.T161fs	GCTGACGGATTCA	.	141	29	138	0	.	227	-	56137828	G	-	56137828	7	5	36	1	0	1	0	1	0	0	0	0	11581	1103	39	0	493	0	PCK1	20	56137828	Frame_Shift_Del	DEL	G	TCGA-CC-A5UC-01A-11D-A28X-10	32665483	56137828	6887692	60	4331											
PNPLA3	80339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44328955	44328955	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PNPLA3	NM_025225	exon4	c.C684T	p.P228P	TGTCCCCCCGGAT	.	121	22	80	0	.	90	T	44328955	C	T	44328955	2	4	36	1	0	0	0	0	0	0	0	1	12166	610	22	3		3	PNPLA3	22	44328955	Silent	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		44328955	6975611	61	4332											
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	56590709	56590709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UBQLN2	NM_013444	exon1	c.C403G	p.P135A	TCCACACCTATTT	.	127	19	138	0	.	131	G	56590709	C	G	56590709	3	3	36	1	0	0	0	0	1	0	0	0	16894	507	18	4	405	4	UBQLN2	23	56590709	Missense_Mutation	SNP	C	TCGA-CC-A5UC-01A-11D-A28X-10		56590709	98679851	62	4333											
LONRF3	79836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118145797	118145797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LONRF3	NM_001031855	exon8	c.A1672G	p.I558V	GTGCCTATTTTCG	.	103	28	147	0	.	289	G	118145797	A	G	118145797	3	3	36	1	0	0	0	0	1	0	0	0	8896	449	16	2	1702	2	LONRF3	23	118145797	Missense_Mutation	SNP	A	TCGA-CC-A5UC-01A-11D-A28X-10	61555088	118145797	37124763	63	4334											
SCNN1D	6339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1223365	1223365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCNN1D	NM_001130413	exon12	c.G1610T	p.G537V	CCGCCGGCGGGGA	.	105	52	150	0	.	90	T	1223365	G	T	1223365	3	4	37	1	0	0	0	0	1	0	0	0	13929	1203	42	3	1350	3	SCNN1D	1	1223365	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10		1223365	248027256	1	4335											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3328344	3328344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRDM16	NM_022114	exon9	c.T1583A	p.L528Q	CGCCTCTGCTACC	.	27	10	50	0	.	660	A	3328344	T	A	3328344	3	1	37	1	0	0	0	0	1	0	0	0	12457	1580	55	4	1617	4	PRDM16	1	3328344	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	2104979	3328344	245922277	2	4336											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10384901	10384901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF1B	NM_015074	exon24	c.A2485C	p.T829P	ACTGTGACTGGCA	.	83	35	78	0	.	93	C	10384901	A	C	10384901	3	2	37	1	0	0	0	0	1	0	0	0	8284	275	10	5	4064	5	KIF1B	1	10384901	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7056557	10384901	238865720	3	4337											
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20474788	20474788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLA2G2F	NM_022819	exon5	c.T530A	p.L177H	GCTTCCTCAATGT	.	193	81	310	1	.	91	A	20474788	T	A	20474788	3	1	37	1	0	0	0	0	1	0	0	0	11999	1551	54	4	548	4	PLA2G2F	1	20474788	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	10089887	20474788	228775833	4	4338											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27107029	27107029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARID1A	NM_006015	exon20	c.A6640T	p.S2214C	CAGGCCAGCCTCC	.	90	38	124	0	.	584	T	27107029	A	T	27107029	3	4	37	1	0	0	0	0	1	0	0	0	913	188	7	4	6718	4	ARID1A	1	27107029	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	6632241	27107029	222143592	5	4339											
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27684710	27684710	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP3K6	NM_004672	exon21	c.G2877A	p.P959P	GCGCTTCGGGGGG	.	96	43	128	0	.	1523	T	27684710	C	T	27684710	2	4	37	1	0	0	0	0	0	0	0	1	9254	871	31	1		1	MAP3K6	1	27684710	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	577681	27684710	221565911	6	4340											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34038176	34038176	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CSMD2	NM_052896	exon51	c.C7698T	p.G2566G	CTCAGCGCCTGCC	.	87	35	107	0	.	103	A	34038176	G	A	34038176	2	1	37	1	0	0	0	0	0	0	0	1	3945	1074	38	1		1	CSMD2	1	34038176	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	6353466	34038176	215212445	7	4341											
MTF1	4520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38287832	38287832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MTF1	NM_005955	exon9	c.A1728C	p.L576F	ACCATTTAATATC	.	163	78	233	0	.	92	G	38287832	T	G	38287832	3	3	37	1	0	0	0	0	1	0	0	0	9922	1751	61	5	545	5	MTF1	1	38287832	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	4249656	38287832	210962789	8	4342											
FOXJ3	22887	ucsc.edu;bcgsc.ca	37	1	42657316	42657316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FOXJ3	NM_001198851	exon11	c.A1009T	p.T337S	TCACTGTACTGCT	.	153	52	226	2	.	228	A	42657316	T	A	42657316	3	1	37	1	0	0	0	0	1	0	0	0	6013	1638	57	4	879	4	FOXJ3	1	42657316	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	4369484	42657316	206593305	9	4343											
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	43055011	43055011	+	Missense_Mutation	SNP	G	G	A	rs145632548		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC30	NM_001080850	exon9	c.G1240A	p.V414I	CAGAACGTAGATG	.	46	18	67	0	G|1.000;A|0.000	90	A	43055011	G	A	43055011	3	1	37	1	0	0	0	0	1	0	0	0	2805	1145	40	1	1270	1	CCDC30	1	43055011	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	397695	43055011	206195610	10	4344											
PTCH2	8643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45307528	45307528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PTCH2	NM_001166292	exon2	c.T256A	p.W86R	CTACCCAGAGCTG	.	140	56	228	1	.	851	T	45307528	A	T	45307528	3	4	37	1	0	0	0	0	1	0	0	0	12731	188	7	4	3459	4	PTCH2	1	45307528	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	2252517	45307528	203943093	11	4345											
ADORA3	140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112045693	112045693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADORA3	NM_020683	exon1	c.A284T	p.H95L	GAGGCGTGGGTAA	.	201	84	339	2	.	156	A	112045693	T	A	112045693	3	1	37	1	0	0	0	0	1	0	0	0	329	1696	59	4	1394	4	ADORA3	1	112045693	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	66738165	112045693	137204928	12	4346											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113655151	113655151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRIG2	NM_014813	exon14	c.G1849T	p.A617S	ACTGGTGCCATGG	.	79	17	123	0	.	229	T	113655151	G	T	113655151	3	4	37	1	0	0	0	0	1	0	0	0	8945	1319	46	3	1903	3	LRIG2	1	113655151	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	1609458	113655151	135595470	13	4347											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144854658	144854658	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PDE4DIP	NM_001198834	exon43	c.6814-2A>T	.	TCTCCCTGGATAA	.	145	9	126	0	.	663	A	144854658	T	A	144854658	5	1	37	1	0	0	0	0	0	0	1	0	11643	1594	55	4	240	4	PDE4DIP	1	144854658	Splice_Site	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	31199507	144854658	104395963	14	4348											
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145688137	145688137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RNF115	NM_014455	exon9	c.A832T	p.T278S	GACTCTACTCGGC	.	242	61	166	0	.	91	T	145688137	A	T	145688137	3	4	37	1	0	0	0	0	1	0	0	0	13430	391	14	4	866	4	RNF115	1	145688137	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	833479	145688137	103562484	15	4349											
FLG	2312	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152279631	152279631	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FLG	NM_002016	exon3	c.A7731C	p.S2577S	GTCTTCTGAGTGT	.	327	76	213	1	.	106	G	152279631	T	G	152279631	2	3	37	1	0	0	0	0	0	0	0	1	5922	1567	55	5		5	FLG	1	152279631	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	6591494	152279631	96970990	16	4350											
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152732782	152732782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KPRP	NM_001025231	exon2	c.T718A	p.Y240N	GGCTCCTATGGGA	.	146	35	80	0	.	95	A	152732782	T	A	152732782	3	1	37	1	0	0	0	0	1	0	0	0	8436	1522	53	4	720	4	KPRP	1	152732782	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	453151	152732782	96517839	17	4351											
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152785001	152785001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LCE1B	NM_178349	exon1	c.C79G	p.P27A	CTCACCCCTAGAT	.	367	174	245	1	.	68	G	152785001	C	G	152785001	3	3	37	1	0	0	0	0	1	0	0	0	8660	623	22	4	81	4	LCE1B	1	152785001	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	52219	152785001	96465620	18	4352											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155449286	155449286	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASH1L	NM_018489	exon3	c.A3375T	p.A1125A	AAAACCTGCATCA	.	186	52	142	0	.	234	A	155449286	T	A	155449286	2	1	37	1	0	0	0	0	0	0	0	1	1041	1567	55	4		4	ASH1L	1	155449286	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	2664285	155449286	93801335	19	4353											
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156594457	156594457	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HAPLN2	NM_021817	exon6	c.T621A	p.P207P	CTACCCTGTGCTC	.	30	7	31	0	.	90	A	156594457	T	A	156594457	2	1	37	1	0	0	0	0	0	0	0	1	6955	1567	55	4		4	HAPLN2	1	156594457	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	1145171	156594457	92656164	20	4354											
CRABP2	1382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156670823	156670823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CRABP2	NM_001199723	exon3	c.A92T	p.K31M	GCAATCTTCCTCA	.	116	31	77	0	.	91	A	156670823	T	A	156670823	3	1	37	1	0	0	0	0	1	0	0	0	3844	1609	56	4	336	4	CRABP2	1	156670823	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	76366	156670823	92579798	21	4355											
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157767574	157767574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FCRL1	NM_001159397	exon8	c.A1034T	p.Q345L	TGCTGTTGTCTGC	.	202	33	125	0	.	153	A	157767574	T	A	157767574	3	1	37	1	0	0	0	0	1	0	0	0	5794	1812	63	4	140	4	FCRL1	1	157767574	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	1096751	157767574	91483047	22	4356											
NUF2	83540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163295880	163295880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUF2	NM_145697	exon2	c.G39C	p.E13D	AGCTGAGATTGTG	.	93	18	58	0	.	231	C	163295880	G	C	163295880	3	2	37	1	0	0	0	0	1	0	0	0	10747	933	33	4	41	4	NUF2	1	163295880	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	5528306	163295880	85954741	23	4357											
TDRD5	163589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179562787	179562787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TDRD5	NM_173533	exon3	c.T425A	p.L142Q	AGGACCTGTTGGC	.	336	82	212	1	.	94	A	179562787	T	A	179562787	3	1	37	1	0	0	0	0	1	0	0	0	15730	1580	55	4	431	4	TDRD5	1	179562787	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	16266907	179562787	69687834	24	4358											
GLUL	2752	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182353642	182353642	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLUL	NM_001033056	exon7	c.T1020C	p.R340R	GGGGCGACGATCT	.	200	41	136	0	.	90	G	182353642	A	G	182353642	2	3	37	1	0	0	0	0	0	0	0	1	6478	262	10	2		2	GLUL	1	182353642	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	2790855	182353642	66896979	25	4359											
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196197434	196197434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KCNT2	NM_198503	exon28	c.C3328G	p.L1110V	TTGGAAGGTAGGC	.	87	17	60	0	.	159	C	196197434	G	C	196197434	3	2	37	1	0	0	0	0	1	0	0	0	8092	1000	35	4	83	4	KCNT2	1	196197434	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	13843792	196197434	53053187	26	4360											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201060850	201060850	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CACNA1S	NM_000069	exon5	c.C612T	p.L204L	CATAAAGAGGACC	.	220	32	211	0	.	94	A	201060850	G	A	201060850	2	1	37	1	0	0	0	0	0	0	0	1	2547	929	33	3		3	CACNA1S	1	201060850	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	4863416	201060850	48189771	27	4361											
MFSD4	148808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	205553249	205553249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD4	NM_181644	exon4	c.T857A	p.L286Q	CACACCTAGGTAG	.	46	12	54	0	.	92	A	205553249	T	A	205553249	3	1	37	1	0	0	0	0	1	0	0	0	9533	1522	53	4	871	4	MFSD4	1	205553249	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	4492399	205553249	43697372	28	4362											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216420052	216420052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USH2A	NM_007123	exon13	c.A2684T	p.Q895L	CAGTGTTGAAAAT	.	238	62	184	1	.	115	A	216420052	T	A	216420052	3	1	37	1	0	0	0	0	1	0	0	0	17033	1812	63	4	13178	4	USH2A	1	216420052	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	10866803	216420052	32830569	29	4363											
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228003457	228003457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRSS38	NM_183062	exon1	c.T40A	p.S14T	GGGCCCTCTGCCC	.	129	43	131	0	.	92	A	228003457	T	A	228003457	3	1	37	1	0	0	0	0	1	0	0	0	12627	1551	54	4	42	4	PRSS38	1	228003457	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	11583405	228003457	21247164	30	4364											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228563447	228563447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OBSCN	NM_001271223	exon109	c.G25579A	p.A8527T	GTGTACGCGGATG	.	171	41	184	0	.	403	A	228563447	G	A	228563447	3	1	37	1	0	0	0	0	1	0	0	0	10812	1087	38	1	24304	1	OBSCN	1	228563447	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	559990	228563447	20687174	31	4365											
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24438936	24438936	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITSN2	NM_006277	exon32	c.T3972C	p.D1324D	TTTGAAATCTGTG	.	87	16	60	0	.	539	G	24438936	A	G	24438936	2	3	37	1	0	0	0	0	0	0	0	1	7927	98	4	2		2	ITSN2	2	24438936	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10		24438936	218760437	32	4366											
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25141705	25141705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADCY3	NM_004036	exon1	c.G152T	p.R51L	ATGAAGCGAGGCA	.	138	41	146	1	.	94	A	25141705	C	A	25141705	3	1	37	1	0	0	0	0	1	0	0	0	295	768	27	1	3366	1	ADCY3	2	25141705	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	702769	25141705	218057668	33	4367											
DTNB	1838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25705696	25705696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DTNB	NM_021907	exon10	c.A1048G	p.M350V	AGGACATGTGGCT	.	111	76	96	0	.	137	C	25705696	T	C	25705696	3	2	37	1	0	0	0	0	1	0	0	0	4789	1464	51	2	879	2	DTNB	2	25705696	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	563991	25705696	217493677	34	4368											
XDH	7498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31571159	31571159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	XDH	NM_000379	exon28	c.A3122T	p.Q1041L	AGGCCTTGGCCCA	.	188	121	212	2	.	158	A	31571159	T	A	31571159	3	1	37	1	0	0	0	0	1	0	0	0	17423	1812	63	4	915	4	XDH	2	31571159	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	5865463	31571159	211628214	35	4369											
SLC8A1	6546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	40655701	40655701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC8A1	NM_001252624	exon1	c.T1720C	p.Y574H	TTTTATATGGAAC	.	100	57	109	1	.	93	G	40655701	A	G	40655701	3	3	37	1	0	0	0	0	1	0	0	0	14706	449	16	2	1349	2	SLC8A1	2	40655701	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	9084542	40655701	202543672	36	4370											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73678026	73678026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ALMS1	NM_015120	exon8	c.G4369T	p.A1457S	TCAGTTGCTCCTG	.	124	75	91	0	.	142	T	73678026	G	T	73678026	3	4	37	1	0	0	0	0	1	0	0	0	535	1319	46	3	4399	3	ALMS1	2	73678026	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	33022325	73678026	169521347	37	4371											
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108999919	108999919	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SULT1C4	NM_006588	exon5	c.A568T	p.K190X	GAAGCCAAAGACA	.	93	55	82	0	.	22	T	108999919	A	T	108999919	4	4	37	1	0	0	0	0	0	1	0	0	15376	131	5	4	586	4	SULT1C4	2	108999919	Nonsense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	35321893	108999919	134199454	38	4372											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152539201	152539201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEB	NM_004543	exon29	c.A2918T	p.K973M	GCTCGCTTTGCCT	.	109	31	77	0	.	145	A	152539201	T	A	152539201	3	1	37	1	0	0	0	0	1	0	0	0	10302	1609	56	4	23384	4	NEB	2	152539201	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	43539282	152539201	90660172	39	4373											
TBR1	10716	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	162279937	162279937	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBR1	NM_006593	exon6	c.C1248A	p.R416R	GCCGCGCTCGCAG	.	98	33	189	1	.	91	A	162279937	C	A	162279937	2	1	37	1	0	0	0	0	0	0	0	1	15644	784	28	3		3	TBR1	2	162279937	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	9740736	162279937	80919436	40	4374											
IFIH1	64135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163124064	163124064	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFIH1	NM_022168	exon15	c.A2823G	p.V941V	TTCTCTTACAATG	.	34	15	43	0	.	91	C	163124064	T	C	163124064	2	2	37	1	0	0	0	0	0	0	0	1	7520	1741	61	2		2	IFIH1	2	163124064	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	844127	163124064	80075309	41	4375											
MFSD6	54842	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191301292	191301292	+	Silent	SNP	G	G	A	rs115585862	byfrequency;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD6	NM_017694	exon3	c.G537A	p.L179L	TATCCTGCCAACA	.	93	32	86	0	G|0.996;T|0.004	92	A	191301292	G	A	191301292	2	1	37	1	0	0	0	0	0	0	0	1	9535	1306	46	3		3	MFSD6	2	191301292	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	28177228	191301292	51898081	42	4376											
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198508920	198508920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RFTN2	NM_144629	exon3	c.G400A	p.A134T	TTTGTGCCTCAGA	.	130	73	104	0	.	90	T	198508920	C	T	198508920	3	4	37	1	0	0	0	0	1	0	0	0	13259	739	26	3	1133	3	RFTN2	2	198508920	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	7207628	198508920	44690453	43	4377											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212812232	212812232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERBB4	NM_001042599	exon3	c.A344T	p.Y115F	AAGGCATATCGAT	.	94	58	97	0	.	1461	A	212812232	T	A	212812232	3	1	37	1	0	0	0	0	1	0	0	0	5209	1406	49	4	3686	4	ERBB4	2	212812232	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	14303312	212812232	30387141	44	4378											
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238275833	238275833	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	COL6A3	NM_004369	exon11	c.T4997A	p.V1666E	GTGTCCACTATTT	.	123	79	134	2	.	526	T	238275833	A	T	238275833	3	4	37	1	0	0	0	0	1	0	0	0	3701	159	6	4	4672	4	COL6A3	2	238275833	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	25463601	238275833	4923540	45	4379											
SEPT2	4735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	242283230	242283230	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SEPT2	NM_001008491	exon10	c.A760T	p.R254X	AAGGTCAGAGGCC	.	162	44	123	0	.	68	T	242283230	A	T	242283230	4	4	37	1	0	0	0	0	0	1	0	0	14064	180	7	4	790	4	SEPT2	2	242283230	Nonsense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	4007397	242283230	916143	46	4380											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	383657	383657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHL1	NM_001253388	exon5	c.G571T	p.A191S	TACTTCGCAAACG	.	340	174	229	0	.	583	T	383657	G	T	383657	3	4	37	1	0	0	0	0	1	0	0	0	3349	1087	38	1	589	1	CHL1	3	383657	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10		383657	197638773	47	4381											
FBLN2	2199	hgsc.bcm.edu;bcgsc.ca	37	3	13670761	13670761	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.T2811C	p.F937F	CGGCTTTCAGCGG	.	107	60	112	0	.	91	C	13670761	T	C	13670761	2	2	37	1	0	0	0	0	0	0	0	1	5699	1780	62	2		2	FBLN2	3	13670761	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	13287104	13670761	184351669	48	4382	28	2									
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	13670764	13670765	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.2814_2815del	p.938_939del	CTTTCAGCGGGAT	.	107	54	110	0	.	91	-	13670765	GC	-	13670764	7	5	37	1	0	1	0	1	0	0	0	0	5699	962	34	0	1550	0	FBLN2	3	13670764	Frame_Shift_Del	DEL	GC	TCGA-CC-A5UD-01A-11D-A28X-10	3	13670764	184351666	49	4383	28	2									
ITGA9	3680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37860441	37860441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITGA9	NM_002207	exon28	c.G3069C	p.E1023D	GAAAGAGAATGAA	.	163	51	181	2	.	715	C	37860441	G	C	37860441	3	2	37	1	0	0	0	0	1	0	0	0	7883	933	33	4	3179	4	ITGA9	3	37860441	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	24189677	37860441	160161989	50	4384											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38951586	38951586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCN11A	NM_014139	exon8	c.1072delC	p.Q358fs	AATCTTGGGTCAT	.	94	23	60	0	.	99	-	38951586	G	-	38951586	7	5	37	1	0	1	0	1	0	0	0	0	13913	1357	47	0	4379	0	SCN11A	3	38951586	Frame_Shift_Del	DEL	G	TCGA-CC-A5UD-01A-11D-A28X-10	1091145	38951586	159070844	51	4385											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	bycluster	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98A	p.S33Y	TGGACTCTGGAAT	.	145	44	139	0	.	24361	A	41266101	C	A	41266101	3	1	37	1	0	0	0	0	1	0	0	0	4016	913	32	3	104	3	CTNNB1	3	41266101	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	2314515	41266101	156756329	52	4386											
KIF15	56992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44879894	44879894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF15	NM_020242	exon27	c.T3299A	p.I1100N	CCCTGATTCAGGA	.	150	86	155	0	.	91	A	44879894	T	A	44879894	3	1	37	1	0	0	0	0	1	0	0	0	8277	1493	52	4	3405	4	KIF15	3	44879894	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	3613793	44879894	153142536	53	4387											
CCR1	1230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46244963	46244963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR1	NM_001295	exon2	c.T842A	p.L281Q	ACAGCCAGGTCCA	.	131	77	114	0	.	660	T	46244963	A	T	46244963	3	4	37	1	0	0	0	0	1	0	0	0	2939	188	7	4	229	4	CCR1	3	46244963	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	1365069	46244963	151777467	54	4388											
NME6	10201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48339972	48339972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NME6	NM_005793	exon2	c.59delA	p.Q20fs	GTGAGCTGGAGAG	.	98	27	109	0	.	115	-	48339972	T	-	48339972	7	5	37	1	0	1	0	1	0	0	0	0	10495	1580	55	0	545	0	NME6	3	48339972	Frame_Shift_Del	DEL	T	TCGA-CC-A5UD-01A-11D-A28X-10	2095009	48339972	149682458	55	4389											
PLXNB1	5364	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48457128	48457128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLXNB1	NM_001130082	exon19	c.A3658T	p.S1220C	GTGGGCTGGTCTC	.	104	30	125	1	.	293	A	48457128	T	A	48457128	3	1	37	1	0	0	0	0	1	0	0	0	12123	1580	55	4	2829	4	PLXNB1	3	48457128	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	117156	48457128	149565302	56	4390											
P4HTM	54681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49042389	49042389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HTM	NM_177938	exon6	c.A983T	p.H328L	ATGCCCACGTGGA	.	102	58	110	0	.	205	T	49042389	A	T	49042389	3	4	37	1	0	0	0	0	1	0	0	0	11360	159	6	4	1005	4	P4HTM	3	49042389	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	585261	49042389	148980041	57	4391											
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52848087	52848087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_002218	exon23	c.G2627T	p.G876V	AACTGGCCTGAGA	.	99	27	111	0	.	46	A	52848087	C	A	52848087	3	1	37	1	0	0	0	0	1	0	0	0	7906	753	26	3	173	3	ITIH4	3	52848087	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	3805698	52848087	145174343	58	4392											
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52861120	52861120	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_001166449	exon3	c.T345C	p.A115A	GAGGCCAGCGCTC	.	177	82	157	1	.	46	G	52861120	A	G	52861120	2	3	37	1	0	0	0	0	0	0	0	1	7906	175	7	2		2	ITIH4	3	52861120	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	13033	52861120	145161310	59	4393											
ROBO1	6091	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78717373	78717373	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ROBO1	NM_002941	exon13	c.A1710T	p.T570T	GACATCTGTCACT	.	116	34	112	1	.	67	A	78717373	T	A	78717373	2	1	37	1	0	0	0	0	0	0	0	1	13513	1567	55	4		4	ROBO1	3	78717373	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	25856253	78717373	119305057	60	4394											
PCOLCE2	26577	broad.mit.edu;ucsc.edu	37	3	142542413	142542413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCOLCE2	NM_013363	exon7	c.A910G	p.T304A	TCCCCGTCCGTCT	.	99	20	112	2	.	93	C	142542413	T	C	142542413	3	2	37	1	0	0	0	0	1	0	0	0	11595	1667	58	2	349	2	PCOLCE2	3	142542413	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	63825040	142542413	55480017	61	4395											
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160803895	160803895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	B3GALNT1	NM_001038628	exon8	c.A648T	p.R216S	AAATCCTCTATAG	.	26	5	28	0	.	91	A	160803895	T	A	160803895	3	1	37	1	0	0	0	0	1	0	0	0	1245	1548	54	4	351	4	B3GALNT1	3	160803895	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	18261482	160803895	37218535	62	4396											
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	166960387	166960387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZBBX	NM_001199201	exon21	c.G2299A	p.D767N	TGAAATCTGGGAA	.	48	16	29	0	.	92	T	166960387	C	T	166960387	3	4	37	1	0	0	0	0	1	0	0	0	17513	913	32	3	228	3	ZBBX	3	166960387	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	6156492	166960387	31062043	63	4397											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184039550	184039550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF4G1	NM_001194946	exon11	c.C1199G	p.P400R	CTGTGCCCATTGC	.	155	96	195	0	.	344	G	184039550	C	G	184039550	3	3	37	1	0	0	0	0	1	0	0	0	5036	623	22	4	1208	4	EIF4G1	3	184039550	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	17079163	184039550	13982880	64	4398											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513058	195513058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MUC4	NM_018406	exon2	c.T5393A	p.V1798D	GAGGAAACGTCGG	.	1859	369	1820	1	.	90	T	195513058	A	T	195513058	3	4	37	1	0	0	0	0	1	0	0	0	9978	43	2	4		4	MUC4	3	195513058	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	11473508	195513058	2509372	65	4399											
MXD4	10608	broad.mit.edu;mdanderson.org	37	4	2252295	2252295	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MXD4	NM_006454	exon6	c.G606T	p.R202R	GCCCAGCCGCCGG	.	16	8	14	0	.	226	A	2252295	C	A	2252295	2	1	37	1	0	0	0	0	0	0	0	1	10001	726	26	3		3	MXD4	4	2252295	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10		2252295	188901981	66	4400											
LDB2	9079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16510279	16510279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LDB2	NM_001290	exon7	c.G770A	p.R257Q	TTTCTCCGTTTGG	.	108	52	97	0	.	90	T	16510279	C	T	16510279	3	4	37	1	0	0	0	0	1	0	0	0	8696	652	23	1	468	1	LDB2	4	16510279	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	14257984	16510279	174643997	67	4401											
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	43032457	43032457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRXCR1	NM_001080476	exon4	c.T773A	p.M258K	GCAAGATGTCCAT	.	118	32	75	1	.	23	A	43032457	T	A	43032457	3	1	37	1	0	0	0	0	1	0	0	0	6812	1464	51	4	787	4	GRXCR1	4	43032457	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	26522178	43032457	148121819	68	4402											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48529665	48529665	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRYL	NM_015030	exon53	c.A7146G	p.V2382V	AGAAAATACAACC	.	50	27	41	0	.	69	C	48529665	T	C	48529665	2	2	37	1	0	0	0	0	0	0	0	1	6064	1393	49	2		2	FRYL	4	48529665	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	5497208	48529665	142624611	69	4403											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55593652	55593652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	KIT,fibrous_tissue_and_uncertain_origin,gastrointestinal_stromal_tumour,0	KIT	NM_000222	exon11	c.C1718A	p.P573Q	TAGACCCAACACA	.	138	77	91	0	.	20166	A	55593652	C	A	55593652	3	1	37	1	0	0	0	0	1	0	0	0	8329	594	21	3	1760	3	KIT	4	55593652	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	7063987	55593652	135560624	70	4404											
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86989078	86989078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAPK10	NM_002753	exon10	c.A833T	p.Q278L	CCTAGTTGTTCAA	.	92	67	100	0	.	1402	A	86989078	T	A	86989078	3	1	37	1	0	0	0	0	1	0	0	0	9272	1812	63	4	586	4	MAPK10	4	86989078	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	31395426	86989078	104165198	71	4405											
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	178231110	178231110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon1	c.G3C	p.M1I	AGAGATGGTGGAA	.	264	15	273	0	.	660	C	178231110	G	C	178231110	3	2	37	1	0	0	0	0	1	0	0	0	10320	1348	47	4	5	4	NEIL3	4	178231110	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	91242032	178231110	12923166	72	4406											
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	178256896	178256896	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon3	c.T333C	p.Y111Y	TAAATATAAAAAT	.	91	79	108	0	.	660	C	178256896	T	C	178256896	2	2	37	1	0	0	0	0	0	0	0	1	10320	1413	49	2		2	NEIL3	4	178256896	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	25786	178256896	12897380	73	4407											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1053526	1053526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC12A7	NM_006598	exon23	c.A3098G	p.D1033G	TGCGCATCCTGGG	.	211	36	164	0	.	138	C	1053526	T	C	1053526	3	2	37	1	0	0	0	0	1	0	0	0	14388	1435	50	2	161	2	SLC12A7	5	1053526	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		1053526	179861734	74	4408											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13830159	13830159	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH5	NM_001369	exon37	c.T6225A	p.P2075P	AAATTCAGGGTTC	.	233	44	163	0	.	182	T	13830159	A	T	13830159	2	4	37	1	0	0	0	0	0	0	0	1	4604	175	7	4		4	DNAH5	5	13830159	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	12776633	13830159	167085101	75	4409											
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928539	15928539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBXL7	NM_012304	exon3	c.A668T	p.Y223F	GCTGTTACAATAT	.	246	53	153	0	.	228	T	15928539	A	T	15928539	3	4	37	1	0	0	0	0	1	0	0	0	5724	391	14	4	678	4	FBXL7	5	15928539	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	2098380	15928539	164986721	76	4410											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	16704767	16704767	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYO10	NM_012334	exon22	c.A2197T	p.K733X	CCAGTTTCTGTTC	.	64	16	58	0	.	3	A	16704767	T	A	16704767	4	1	37	1	0	0	0	0	0	1	0	0	10062	1792	62	4	4059	4	MYO10	5	16704767	Nonsense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	776228	16704767	164210493	77	4411											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	71494849	71494849	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP1B	NM_005909	exon5	c.T5667C	p.Y1889Y	TGACTATGAGTCT	.	48	27	54	0	.	155	C	71494849	T	C	71494849	2	2	37	1	0	0	0	0	0	0	0	1	9228	1471	51	2		2	MAP1B	5	71494849	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	54790082	71494849	109420411	78	4412											
CMYA5	202333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79057643	79057643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CMYA5	NM_153610	exon8	c.A11270T	p.E3757V	TGGTAGAAGAATA	.	70	37	100	1	.	77	T	79057643	A	T	79057643	3	4	37	1	0	0	0	0	1	0	0	0	3590	246	9	4	11300	4	CMYA5	5	79057643	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7562794	79057643	101857617	79	4413											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	82834673	82834673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	VCAN	NM_004385	exon8	c.G5851A	p.E1951K	GCAAAAGAAGAAA	.	56	14	66	0	.	238	A	82834673	G	A	82834673	3	1	37	1	0	0	0	0	1	0	0	0	17135	943	33	3	5877	3	VCAN	5	82834673	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	3777030	82834673	98080587	80	4414											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89971058	89971058	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR98	NM_032119	exon24	c.5111-2A>T	.	TCCACTAGGCTTG	.	59	23	82	0	.	103	T	89971058	A	T	89971058	5	4	37	1	0	0	0	0	0	0	1	0	6721	434	15	4	5203	4	GPR98	5	89971058	Splice_Site	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7136385	89971058	90944202	81	4415											
ELL2	22936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95242487	95242487	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELL2	NM_012081	exon6	c.482-1G>C	.	TTTTCCCTAAAGT	.	88	34	104	1	.	90	G	95242487	C	G	95242487	5	3	37	1	0	0	0	0	0	0	1	0	5063	695	24	4	1473	4	ELL2	5	95242487	Splice_Site	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	5271429	95242487	85672773	82	4416											
TCF7	6932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133480499	133480499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TCF7	NM_201634	exon9	c.C742T	p.P248S	GGCTCGCCTAAGA	.	107	38	218	0	.	90	T	133480499	C	T	133480499	3	4	37	1	0	0	0	0	1	0	0	0	15693	739	26	3	1125	3	TCF7	5	133480499	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	38238012	133480499	47434761	83	4417											
PITX1	5307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134364795	134364795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PITX1	NM_002653	exon3	c.C619G	p.P207A	ACAGCGGGCTCAT	.	122	46	193	0	.	227	C	134364795	G	C	134364795	3	2	37	1	0	0	0	0	1	0	0	0	11954	1232	43	4	329	4	PITX1	5	134364795	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	884296	134364795	46550465	84	4418											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189340	139189340	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSD2	NM_032289	exon2	c.A315T	p.A105A	GCTGGCAGAGGGG	.	59	32	90	0	.	91	T	139189340	A	T	139189340	2	4	37	1	0	0	0	0	0	0	0	1	12647	175	7	4		4	PSD2	5	139189340	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	4824545	139189340	41725920	85	4419											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139909162	139909162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANKHD1	NM_017747	exon29	c.A6631T	p.N2211Y	CTTTTCAATCACT	.	93	41	123	0	.	185	T	139909162	A	T	139909162	3	4	37	1	0	0	0	0	1	0	0	0	628	130	5	4	6851	4	ANKHD1	5	139909162	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	719822	139909162	41006098	86	4420											
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140308516	140308516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHAC1	NM_031882	exon1	c.A2039T	p.Q680L	CTGCCCAGAACTT	.	52	24	79	0	.	28	T	140308516	A	T	140308516	3	4	37	1	0	0	0	0	1	0	0	0	11532	188	7	4	2041	4	PCDHAC1	5	140308516	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	399354	140308516	40606744	87	4421											
PCDHB2	56133	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140475814	140475814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHB2	NM_018936	exon1	c.A1440T	p.R480S	AGACAGAGACTCG	.	164	58	249	0	.	96	T	140475814	A	T	140475814	3	4	37	1	0	0	0	0	1	0	0	0	11542	301	11	4	1442	4	PCDHB2	5	140475814	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	167298	140475814	40439446	88	4422											
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150663626	150663626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC36A3	NM_001145017	exon9	c.C1076A	p.T359N	TTGAGGGTGATGC	.	111	49	145	0	.	93	T	150663626	G	T	150663626	3	4	37	1	0	0	0	0	1	0	0	0	14595	1261	44	3	471	3	SLC36A3	5	150663626	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	10187812	150663626	30251634	89	4423											
MGAT1	4245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180218676	180218676	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAT1	NM_001114617	exon3	c.G1296A	p.A432A	TGGGGGCGCCAGG	.	213	96	282	0	.	91	T	180218676	C	T	180218676	2	4	37	1	0	0	0	0	0	0	0	1	9542	755	27	1		1	MGAT1	5	180218676	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	29555050	180218676	696584	90	4424											
NUP153	9972	broad.mit.edu;ucsc.edu	37	6	17637902	17637902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP153	NM_005124	exon16	c.G1946A	p.G649E	CCAATTCCACTAG	.	14	5	16	0	.	637	T	17637902	C	T	17637902	3	4	37	1	0	0	0	0	1	0	0	0	10755	855	30	3	2509	3	NUP153	6	17637902	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10		17637902	153477165	91	4425											
PSMB9	5698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32826201	32826201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSMB9	NM_002800	exon5	c.A451T	p.S151C	TCCGGCAGCACCT	.	75	31	94	0	.	90	T	32826201	A	T	32826201	3	4	37	1	0	0	0	0	1	0	0	0	12684	188	7	4	469	4	PSMB9	6	32826201	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	15188299	32826201	138288866	92	4426											
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35280290	35280290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DEF6	NM_022047	exon4	c.A635T	p.E212V	ACCAGGAGCTCAT	.	93	76	167	0	.	227	T	35280290	A	T	35280290	3	4	37	1	0	0	0	0	1	0	0	0	4386	304	11	4	649	4	DEF6	6	35280290	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	2454089	35280290	135834777	93	4427											
NCR2	9436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41309647	41309647	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCR2	NM_004828	exon3	c.T510C	p.S170S	TCCATCTACCATC	.	63	50	106	0	.	91	C	41309647	T	C	41309647	2	2	37	1	0	0	0	0	0	0	0	1	10238	1509	53	2		2	NCR2	6	41309647	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	6029357	41309647	129805420	94	4428											
FRK	2444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116277657	116277657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRK	NM_002031	exon5	c.A916T	p.T306S	ACTCTGTAATAAT	.	31	12	63	0	.	948	A	116277657	T	A	116277657	3	1	37	1	0	0	0	0	1	0	0	0	6048	1638	57	4	617	4	FRK	6	116277657	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	74968010	116277657	54837410	95	4429											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143092423	143092423	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HIVEP2	NM_006734	exon5	c.G3453T	p.L1151L	CAGGTGCAGTGGC	.	91	35	88	0	.	95	A	143092423	C	A	143092423	2	1	37	1	0	0	0	0	0	0	0	1	7187	697	25	3		3	HIVEP2	6	143092423	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	26814766	143092423	28022644	96	4430											
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155569180	155569180	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TIAM2	NM_012454	exon19	c.C3699T	p.P1233P	GAACCCCACCAAG	.	83	69	125	0	.	93	T	155569180	C	T	155569180	2	4	37	1	0	0	0	0	0	0	0	1	15888	581	21	3		3	TIAM2	6	155569180	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	12476757	155569180	15545887	97	4431											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2984108	2984108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CARD11	NM_032415	exon5	c.A422T	p.Q141L	TTCATCTGCTGCT	.	79	33	102	0	.	870	A	2984108	T	A	2984108	3	1	37	1	0	0	0	0	1	0	0	0	2645	1580	55	4	3126	4	CARD11	7	2984108	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		2984108	156154555	98	4432											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4188918	4188918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon30	c.T4448A	p.L1483H	GAGAGCTCCTGGT	.	54	16	75	0	.	138	A	4188918	T	A	4188918	3	1	37	1	0	0	0	0	1	0	0	0	13968	1551	54	4	4566	4	SDK1	7	4188918	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	1204810	4188918	154949745	99	4433											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4201422	4201422	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon32	c.A4734T	p.P1578P	AGTTCCAGGAGAG	.	90	39	134	0	.	138	T	4201422	A	T	4201422	2	4	37	1	0	0	0	0	0	0	0	1	13968	175	7	4		4	SDK1	7	4201422	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	12504	4201422	154937241	100	4434											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20698148	20698148	+	Missense_Mutation	SNP	G	G	T	rs199505251	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon14	c.G1556T	p.G519V	TGGTAGGGGAAAA	.	25	11	55	0	G|0.999;A|0.001	158	T	20698148	G	T	20698148	3	4	37	1	0	0	0	0	1	0	0	0	44	1232	43	3	1606	3	ABCB5	7	20698148	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	16496726	20698148	138440515	101	4435											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20762841	20762841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon21	c.A2624T	p.K875M	CTGGAAAGGTAAA	.	44	6	77	0	.	158	T	20762841	A	T	20762841	3	4	37	1	0	0	0	0	1	0	0	0	44	86	3	4	2743	4	ABCB5	7	20762841	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	64693	20762841	138375822	102	4436											
TBX20	57057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35293206	35293206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBX20	NM_001077653	exon1	c.C26A	p.P9H	AGTTGGGGCTTGG	.	29	12	46	0	.	90	T	35293206	G	T	35293206	3	4	37	1	0	0	0	0	1	0	0	0	15653	1232	43	3	1350	3	TBX20	7	35293206	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	14530365	35293206	123845457	103	4437											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42088201	42088201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLI3	NM_000168	exon5	c.T568A	p.F190I	GGCTGAAGGGAGA	.	167	55	240	0	.	1149	T	42088201	A	T	42088201	3	4	37	1	0	0	0	0	1	0	0	0	6439	72	3	4	4218	4	GLI3	7	42088201	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	6794995	42088201	117050462	104	4438											
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97484710	97484710	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASNS	NM_133436	exon9	c.A1092T	p.G364G	TCCTTCTCCAGAG	.	45	13	32	0	.	91	A	97484710	T	A	97484710	2	1	37	1	0	0	0	0	0	0	0	1	1048	1538	54	4		4	ASNS	7	97484710	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	55396509	97484710	61653953	105	4439											
PILRA	29992	ucsc.edu;bcgsc.ca	37	7	99987596	99987596	+	Silent	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PILRA	NM_013439	exon3	c.C540G	p.V180V	CAGGGTCACACAG	.	147	51	261	2	.	91	G	99987596	C	G	99987596	2	3	37	1	0	0	0	0	0	0	0	1	11925	813	29	4		4	PILRA	7	99987596	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	2502886	99987596	59151067	106	4440											
LMOD2	442721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123302237	123302237	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LMOD2	NM_207163	exon2	c.T597A	p.I199I	AGTGATTGAGGAC	.	85	38	97	0	.	68	A	123302237	T	A	123302237	2	1	37	1	0	0	0	0	0	0	0	1	8857	1800	63	4		4	LMOD2	7	123302237	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	23314641	123302237	35836426	107	4441											
WASL	8976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123332584	123332584	+	Silent	SNP	C	C	T	rs138588268	byfrequency;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WASL	NM_003941	exon9	c.G1164A	p.P388P	GCCAGGCGGGGGC	.	26	10	40	0	C|0.999;A|0.001	90	T	123332584	C	T	123332584	2	4	37	1	0	0	0	0	0	0	0	1	17253	755	27	1		1	WASL	7	123332584	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	30347	123332584	35806079	108	4442											
LEP	3952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127894794	127894794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LEP	NM_000230	exon3	c.T482A	p.L161Q	GGCAGCTGGACCT	.	25	13	40	0	.	90	A	127894794	T	A	127894794	3	1	37	1	0	0	0	0	1	0	0	0	8727	1580	55	4	488	4	LEP	7	127894794	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	4562210	127894794	31243869	109	4443											
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	135095305	135095305	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CNOT4	NM_001190850	exon7	c.A781T	p.K261X	TATTTTTATCAAC	.	63	30	78	0	.	90	A	135095305	T	A	135095305	4	1	37	1	0	0	0	0	0	1	0	0	3621	1763	61	4	1263	4	CNOT4	7	135095305	Nonsense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	7200511	135095305	24043358	110	4444											
KIAA1549	57670	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138602195	138602195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIAA1549	NM_020910	exon2	c.C2177A	p.S726Y	TCGAGAGAATCAG	.	63	24	71	1	.	369	T	138602195	G	T	138602195	3	4	37	1	0	0	0	0	1	0	0	0	8244	942	33	3	3751	3	KIAA1549	7	138602195	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	3506890	138602195	20536468	111	4445											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141765270	141765270	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAM	NM_004668	exon38	c.4618+2T>A	.	CATTGGTGCGTGG	.	64	37	90	0	.	70	A	141765270	T	A	141765270	5	1	37	1	0	0	0	0	0	0	1	0	9541	1710	59	4	4766	4	MGAM	7	141765270	Splice_Site	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	3163075	141765270	17373393	112	4446											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149529876	149529876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_198455	exon109	c.A15290T	p.Q5097L	AGAGCCAGTGTGA	.	40	17	86	0	.	.	T	149529876	A	T	149529876	3	4	37	1	0	0	0	0	1	0	0	0	15188	188	7	4	15715	4	SSPO	7	149529876	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7764606	149529876	9608787	113	4447											
WDR60	55112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158672638	158672638	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WDR60	NM_018051	exon5	c.A837G	p.K279K	TAGAAAAGAGAAA	.	189	72	213	0	.	92	G	158672638	A	G	158672638	2	3	37	1	0	0	0	0	0	0	0	1	17308	69	3	2		2	WDR60	7	158672638	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	9142762	158672638	466025	114	4448											
LZTS1	11178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20112615	20112615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LZTS1	NM_021020	exon1	c.C78T	p.R26R	GGACTTGCGCAGC	.	105	27	99	0	.	91	A	20112615	G	A	20112615	2	1	37	1	0	0	0	0	0	0	0	1	9138	1306	46	3		3	LZTS1	8	20112615	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10		20112615	126251407	115	4449											
C8orf58	541565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22458397	22458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C8orf58	NM_001013842	exon2	c.G43T	p.G15W	GCAGATGGGGCTG	.	64	42	76	0	.	91	T	22458397	G	T	22458397	3	4	37	1	0	0	0	0	1	0	0	0	2433	1348	47	3	49	3	C8orf58	8	22458397	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	2345782	22458397	123905625	116	4450											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35542098	35542098	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC5D	NM_080872	exon6	c.752-2A>T	.	TCTCTCAGTGAAT	.	85	16	109	0	.	96	T	35542098	A	T	35542098	5	4	37	1	0	0	0	0	0	0	1	0	16992	202	7	4	772	4	UNC5D	8	35542098	Splice_Site	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	13083701	35542098	110821924	117	4451											
WHSC1L1	54904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	38133854	38133854	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WHSC1L1	NM_023034	exon23	c.A4032C	p.A1344A	GTGGTATGCTTTG	.	321	80	248	1	.	658	G	38133854	T	G	38133854	2	3	37	1	0	0	0	0	0	0	0	1	17360	1451	51	5		5	WHSC1L1	8	38133854	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	2591756	38133854	108230168	118	4452											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765635	61765635	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHD7	NM_017780	exon31	c.C6351T	p.L2117L	CATCCTCAATGAC	.	182	50	176	0	.	141	T	61765635	C	T	61765635	2	4	37	1	0	0	0	0	0	0	0	1	3330	813	29	3		3	CHD7	8	61765635	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	23631781	61765635	84598387	119	4453											
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116599393	116599393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRPS1	NM_014112	exon5	c.T2535G	p.N845K	CTCCACATTGGGA	.	117	19	51	0	.	229	C	116599393	A	C	116599393	3	2	37	1	0	0	0	0	1	0	0	0	16590	214	8	5	1361	5	TRPS1	8	116599393	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	54833758	116599393	29764629	120	4454											
NOV	4856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120431542	120431542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOV	NM_002514	exon4	c.T734A	p.M245K	TCTGCATGGTGCG	.	192	75	100	1	.	228	A	120431542	T	A	120431542	3	1	37	1	0	0	0	0	1	0	0	0	10553	1464	51	4	748	4	NOV	8	120431542	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	3832149	120431542	25932480	121	4455											
ATAD2	29028	broad.mit.edu;ucsc.edu	37	8	124361592	124361592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATAD2	NM_014109	exon14	c.T1739C	p.I580T	GGATCTATAGAAT	.	127	18	73	1	.	92	G	124361592	A	G	124361592	3	3	37	1	0	0	0	0	1	0	0	0	1071	449	16	2	2493	2	ATAD2	8	124361592	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	3930050	124361592	22002430	122	4456											
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133595953	133595953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC6	NM_012472	exon11	c.A1214T	p.Q405L	TTTGTTTGTTCTC	.	289	44	95	0	.	92	A	133595953	T	A	133595953	3	1	37	1	0	0	0	0	1	0	0	0	9016	1812	63	4	194	4	LRRC6	8	133595953	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	9234361	133595953	12768069	123	4457											
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144899155	144899155	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_078480	exon11	c.C1305T	p.S435S	CTGCTCGCTCAGC	.	128	10	111	0	.	.	A	144899155	G	A	144899155	2	1	37	1	0	0	0	0	0	0	0	1	12824	1078	38	1		1	PUF60	8	144899155	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	11303202	144899155	1464867	124	4458											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144943295	144943295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EPPK1	NM_031308	exon1	c.A4127T	p.Q1376L	GCCGCCTGGGGCA	.	100	41	51	0	.	25	A	144943295	T	A	144943295	3	1	37	1	0	0	0	0	1	0	0	0	5190	1580	55	4	3139	4	EPPK1	8	144943295	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	44140	144943295	1420727	125	4459											
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145640635	145640635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A4	NM_130849	exon3	c.A643T	p.S215C	CCTCGCTGCTGTG	.	273	34	161	0	.	90	A	145640635	T	A	145640635	3	1	37	1	0	0	0	0	1	0	0	0	14620	1580	55	4	1340	4	SLC39A4	8	145640635	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	697340	145640635	723387	126	4460											
ADAMTSL1	92949	broad.mit.edu;bcgsc.ca	37	9	18776974	18776974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADAMTSL1	NM_001040272	exon19	c.A2747T	p.Q916L	ACGGCCAGCACCT	.	69	54	89	2	.	230	T	18776974	A	T	18776974	3	4	37	1	0	0	0	0	1	0	0	0	274	188	7	4	2825	4	ADAMTSL1	9	18776974	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10		18776974	122436457	127	4461											
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19786418	19786418	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A2	NM_001193288	exon1	c.A447T	p.L149F	AATGGCTAAGGCT	.	33	27	31	0	.	517	A	19786418	T	A	19786418	3	1	37	1	0	0	0	0	1	0	0	0	14466	1519	53	4	1578	4	SLC24A2	9	19786418	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	1009444	19786418	121427013	128	4462											
IFNW1	3467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21141360	21141360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFNW1	NM_002177	exon1	c.G210T	p.Q70H	CTGCAACTGGCTC	.	53	42	82	1	.	90	A	21141360	C	A	21141360	3	1	37	1	0	0	0	0	1	0	0	0	7552	564	20	3	381	3	IFNW1	9	21141360	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	1354942	21141360	120072071	129	4463											
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82333727	82333727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TLE4	NM_007005	exon15	c.T1431A	p.H477Q	CCGGCATGCTCGC	.	156	36	168	0	.	524	A	82333727	T	A	82333727	3	1	37	1	0	0	0	0	1	0	0	0	15938	1461	51	4	1489	4	TLE4	9	82333727	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	61192367	82333727	58879704	130	4464											
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114500592	114500592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C9orf84	NM_173521	exon10	c.T1193A	p.I398K	AAAAATATCTCAA	.	63	29	43	0	.	92	T	114500592	A	T	114500592	3	4	37	1	0	0	0	0	1	0	0	0	2500	449	16	4	3209	4	C9orf84	9	114500592	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	32166865	114500592	26712839	131	4465											
HDHD3	81932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116135994	116135994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HDHD3	NM_031219	exon2	c.C641T	p.P214L	GCCTGTGGGCCAA	.	105	64	90	0	.	90	A	116135994	G	A	116135994	3	1	37	1	0	0	0	0	1	0	0	0	7024	1348	47	3	118	3	HDHD3	9	116135994	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	1635402	116135994	25077437	132	4466											
NCS1	23413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132980139	132980139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCS1	NM_014286	exon3	c.A118T	p.S40C	TGCCCCAGTGGGC	.	139	39	123	0	.	90	T	132980139	A	T	132980139	3	4	37	1	0	0	0	0	1	0	0	0	10240	188	7	4	142	4	NCS1	9	132980139	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	16844145	132980139	8233292	133	4467											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134525525	134525525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAPGEF1	NM_198679	exon3	c.A309C	p.Q103H	CTGCCTTTGAGAC	.	89	67	95	0	.	849	G	134525525	T	G	134525525	3	3	37	1	0	0	0	0	1	0	0	0	13043	1838	64	5	3066	5	RAPGEF1	9	134525525	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	1545386	134525525	6687906	134	4468											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	16877186	16877186	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CUBN	NM_001081	exon64	c.A10189T	p.R3397X	AGTCTCTGTTGCA	.	242	68	80	0	.	166	A	16877186	T	A	16877186	4	1	37	1	0	0	0	0	0	1	0	0	4051	1588	55	4	698	4	CUBN	10	16877186	Nonsense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		16877186	118657561	135	4469											
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18282139	18282139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A12	NM_001145195	exon9	c.G1452A	p.V484V	GCACGTGGGTCAT	.	303	43	141	1	.	154	A	18282139	G	A	18282139	2	1	37	1	0	0	0	0	0	0	0	1	14615	1335	47	3		3	SLC39A12	10	18282139	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	1404953	18282139	117252608	136	4470											
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25701321	25701321	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR158	NM_020752	exon4	c.T1254G	p.L418L	ACGACTTGCCATC	.	296	82	115	0	.	141	G	25701321	T	G	25701321	2	3	37	1	0	0	0	0	0	0	0	1	6663	1799	63	5		5	GPR158	10	25701321	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	7419182	25701321	109833426	137	4471											
P4HA1	5033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	74803644	74803660	+	Frame_Shift_Del	DEL	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HA1	NM_001142596	exon9	c.1133_1148del	p.378_383del	CCCTTACCTCTTA	.	24	13	76	0	.	69	-	74803660	CCTCTTAGATACTCTGT	-	74803644	7	5	37	1	0	1	0	1	0	0	0	0	11356	521	18	0	483	0	P4HA1	10	74803644	Frame_Shift_Del	DEL	CCTCTTAGATACTCTGT	TCGA-CC-A5UD-01A-11D-A28X-10	49102323	74803644	60731103	138	4472											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89712017	89712017	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon6	c.634+1G>T	.	CTTGCAGTAAGTG	.	16	12	39	0	.	17735	T	89712017	G	T	89712017	5	4	37	1	0	0	0	0	0	0	1	0	12738	1043	36	3	657	3	PTEN	10	89712017	Splice_Site	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	14908373	89712017	45822730	139	4473											
ANO9	338440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	428381	428381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANO9	NM_001012302	exon14	c.T1199A	p.V400E	AGGGCCACGCACC	.	101	30	133	1	.	227	T	428381	A	T	428381	3	4	37	1	0	0	0	0	1	0	0	0	704	159	6	4	1189	4	ANO9	11	428381	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10		428381	134578135	140	4474											
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661967	4661967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR51D1	NM_001004751	exon1	c.T947A	p.L316H	GGGTCCTCTGTAT	.	100	25	67	0	.	68	A	4661967	T	A	4661967	3	1	37	1	0	0	0	0	1	0	0	0	11093	1551	54	4	949	4	OR51D1	11	4661967	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	4233586	4661967	130344549	141	4475											
EIF3F	8665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8017529	8017529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF3F	NM_003754	exon8	c.A1034T	p.Q345L	TCACACAGTCACA	.	62	16	57	0	.	500	T	8017529	A	T	8017529	3	4	37	1	0	0	0	0	1	0	0	0	5016	188	7	4	1064	4	EIF3F	11	8017529	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	3355562	8017529	126988987	142	4476											
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9462080	9462080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IPO7	NM_006391	exon23	c.2774delA	p.E925fs	CTGGTGAAGATGG	.	155	48	138	0	.	271	-	9462080	A	-	9462080	7	5	37	1	0	1	0	1	0	0	0	0	7797	246	9	0	2864	0	IPO7	11	9462080	Frame_Shift_Del	DEL	A	TCGA-CC-A5UD-01A-11D-A28X-10	1444551	9462080	125544436	143	4477											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137322	40137322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC4C	NM_001258419	exon7	c.T521C	p.L174S	CGGCGCAAAGAAG	.	76	18	52	0	.	521	G	40137322	A	G	40137322	3	3	37	1	0	0	0	0	1	0	0	0	9008	131	5	2	1405	2	LRRC4C	11	40137322	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	30675242	40137322	94869194	144	4478											
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	55926911	55926911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR8K5	NM_001004058	exon1	c.G883T	p.E295X	CCTCTTCGTTTCT	.	39	13	81	0	.	72	A	55926911	C	A	55926911	4	1	37	1	0	0	0	0	0	1	0	0	11245	893	31	1	43	1	OR8K5	11	55926911	Nonsense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	15789589	55926911	79079605	145	4479											
OR5R1	219479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56185421	56185421	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR5R1	NM_001004744	exon1	c.T288A	p.A96A	TGCACAAGCATGG	.	93	46	111	2	.	70	T	56185421	A	T	56185421	2	4	37	1	0	0	0	0	0	0	0	1	11180	59	3	4		4	OR5R1	11	56185421	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	258510	56185421	78821095	146	4480											
OR4D9	390199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59283045	59283045	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR4D9	NM_001004711	exon1	c.C660A	p.V220V	CACGGTCATCTTG	.	78	36	94	0	.	68	A	59283045	C	A	59283045	2	1	37	1	0	0	0	0	0	0	0	1	11059	813	29	3		3	OR4D9	11	59283045	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	3097624	59283045	75723471	147	4481											
IL18BP	10068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71712350	71712350	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IL18BP	NM_001145057	exon4	c.A339G	p.R113R	AGGCCGACTGTGG	.	85	36	108	0	.	90	G	71712350	A	G	71712350	2	3	37	1	0	0	0	0	0	0	0	1	7646	262	10	2		2	IL18BP	11	71712350	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	12429305	71712350	63294166	148	4482											
FOLR3	2352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71847147	71847147	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	GCCCCGAGGACGA	.	206	71	354	0	.	.	C	71847147	A	C	71847147	3	2	37	1	0	0	0	0	1	0	0	0	5983	304	11	5	151	5	FOLR3	11	71847147	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	134797	71847147	63159369	149	4483											
FOLR3	2352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71850783	71850783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	TTTGACTCAGCCC	.	128	54	174	0	.	.	A	71850783	T	A	71850783	3	1	37	1	0	0	0	0	1	0	0	0	5983	1551	54	4	658	4	FOLR3	11	71850783	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	3636	71850783	63155733	150	4484											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108114838	108114838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATM	NM_000051	exon6	c.T655A	p.C219S	ATTCAGTGTGCGA	.	39	14	54	0	.	3419	A	108114838	T	A	108114838	3	1	37	1	0	0	0	0	1	0	0	0	1109	1696	59	4	673	4	ATM	11	108114838	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	36264055	108114838	26891678	151	4485											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118347664	118347664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MLL	NM_001197104	exon4	c.C3301T	p.R1101X	GAAGAACGAGAAA	.	121	44	151	0	.	1255	T	118347664	C	T	118347664	4	4	37	1	0	0	0	0	0	1	0	0	9620	528	19	1	3315	1	MLL	11	118347664	Nonsense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	10232826	118347664	16658852	152	4486											
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	125514071	125514071	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHEK1	NM_001244846	exon10	c.A1009T	p.K337X	ATTGATAAATTGG	.	77	39	66	0	.	1509	T	125514071	A	T	125514071	4	4	37	1	0	0	0	0	0	1	0	0	3334	363	13	4	1043	4	CHEK1	11	125514071	Nonsense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7166407	125514071	9492445	153	4487											
KLRC4	8302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10561527	10561527	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KLRC4	NM_013431	exon2	c.A270T	p.T90T	AACTATTGTTTTT	.	317	180	344	0	.	90	A	10561527	T	A	10561527	2	1	37	1	0	0	0	0	0	0	0	1	8418	1799	63	4		4	KLRC4	12	10561527	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		10561527	123290368	154	4488											
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50190491	50190491	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCKAP5L	NM_001037806	exon8	c.T1152C	p.G384G	TGGGGTACCCCCA	.	37	8	43	0	.	68	G	50190491	A	G	50190491	2	3	37	1	0	0	0	0	0	0	0	1	10224	378	14	2		2	NCKAP5L	12	50190491	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	39628964	50190491	83661404	155	4489											
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53723037	53723037	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_152860	exon2	c.T189A	p.A63A	TGGATAAGCATCC	.	63	24	67	0	.	.	T	53723037	A	T	53723037	2	4	37	1	0	0	0	0	0	0	0	1	14969	59	3	4		4	SP7	12	53723037	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	3532546	53723037	80128858	156	4490											
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54118967	54118967	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CALCOCO1	NM_020898	exon2	c.A60T	p.V20V	CCGGGCTACATTG	.	246	146	230	0	.	91	A	54118967	T	A	54118967	2	1	37	1	0	0	0	0	0	0	0	1	2577	1509	53	4		4	CALCOCO1	12	54118967	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	395930	54118967	79732928	157	4491											
METTL1	4234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58163625	58163625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	METTL1	NM_005371	exon3	c.G389T	p.G130V	TGGAAGCCACCTG	.	135	77	157	0	.	492	A	58163625	C	A	58163625	3	1	37	1	0	0	0	0	1	0	0	0	9493	739	26	3	457	3	METTL1	12	58163625	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	4044658	58163625	75688270	158	4492											
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71960645	71960645	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGR5	NM_003667	exon11	c.A1023T	p.S341S	GATCTCATCTCTT	.	176	91	125	0	.	527	T	71960645	A	T	71960645	2	4	37	1	0	0	0	0	0	0	0	1	8757	204	8	4		4	LGR5	12	71960645	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	13797020	71960645	61891250	159	4493											
TMTC3	160418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88548085	88548085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TMTC3	NM_181783	exon4	c.A429T	p.R143S	TGGAAGAGCAGAA	.	26	5	40	0	.	91	T	88548085	A	T	88548085	3	4	37	1	0	0	0	0	1	0	0	0	16259	301	11	4	439	4	TMTC3	12	88548085	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	16587440	88548085	45303810	160	4494											
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95927304	95927304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USP44	NM_032147	exon2	c.T729A	p.D243E	TACTTTATCTTTT	.	72	19	63	0	.	658	T	95927304	A	T	95927304	3	4	37	1	0	0	0	0	1	0	0	0	17072	446	16	4	1429	4	USP44	12	95927304	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7379219	95927304	37924591	161	4495											
GLT8D2	83468	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104396987	104396987	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLT8D2	NM_031302	exon5	c.T210A	p.N70K	GATGCTATTGATG	.	151	89	115	1	.	92	T	104396987	A	T	104396987	3	4	37	1	0	0	0	0	1	0	0	0	6470	446	16	4	867	4	GLT8D2	12	104396987	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	8469683	104396987	29454908	162	4496											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117669901	117669901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOS1	NM_001204218	exon23	c.C3373G	p.P1125A	AGGGCGGGAGGCG	.	158	54	190	0	.	154	C	117669901	G	C	117669901	3	2	37	1	0	0	0	0	1	0	0	0	10541	1232	43	4	1065	4	NOS1	12	117669901	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	13272914	117669901	16181994	163	4497											
PAN3	255967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28748529	28748529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PAN3	NM_175854	exon2	c.A551T	p.Q184L	TGATGCAGGTATC	.	29	20	33	0	.	69	T	28748529	A	T	28748529	3	4	37	1	0	0	0	0	1	0	0	0	11415	202	7	4	557	4	PAN3	13	28748529	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10		28748529	86421349	164	4498											
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33092036	33092036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	N4BP2L2	NM_014887	exon6	c.A1655G	p.H552R	CTTTTGTGTGATG	.	77	43	74	0	.	68	C	33092036	T	C	33092036	3	2	37	1	0	0	0	0	1	0	0	0	10112	1696	59	2	1961	2	N4BP2L2	13	33092036	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	4343507	33092036	82077842	165	4499											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	35923307	35923307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NBEA	NM_015678	exon37	c.T5966A	p.L1989X	TTATTTTGAACAG	.	102	30	130	0	.	144	A	35923307	T	A	35923307	4	1	37	1	0	0	0	0	0	1	0	0	10187	1821	63	4	6112	4	NBEA	13	35923307	Nonsense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	2831271	35923307	79246571	166	4500											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95822825	95822825	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCC4	NM_005845	exon14	c.G1785C	p.Q595H	GAGGTACTGCAAC	.	44	19	47	0	.	515	G	95822825	C	G	95822825	3	3	37	1	0	0	0	0	1	0	0	0	55	564	20	4	2313	4	ABCC4	13	95822825	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	59899518	95822825	19347053	167	4501											
OR11H4	390442	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20711071	20711071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR11H4	NM_001004479	exon1	c.T121C	p.F41L	TCATTGTTTTTGG	.	174	54	150	1	.	69	C	20711071	T	C	20711071	3	2	37	1	0	0	0	0	1	0	0	0	10928	1725	60	2	123	2	OR11H4	14	20711071	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		20711071	86638469	168	4502											
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44975744	44975744	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FSCB	NM_032135	exon1	c.A447G	p.E149E	CACTTTTTCTACA	.	167	107	146	0	.	587	C	44975744	T	C	44975744	2	2	37	1	0	0	0	0	0	0	0	1	6066	1838	64	2		2	FSCB	14	44975744	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	24264673	44975744	62373796	169	4503											
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65209799	65209799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLEKHG3	NM_015549	exon15	c.A2870T	p.Q957L	CACCACAGCGTTT	.	73	22	92	0	.	91	T	65209799	A	T	65209799	3	4	37	1	0	0	0	0	1	0	0	0	12070	188	7	4	2924	4	PLEKHG3	14	65209799	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	20234055	65209799	42139741	170	4504											
EIF2B2	8892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75469779	75469779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF2B2	NM_014239	exon1	c.G86C	p.R29P	GGCCGCGCAGCTC	.	222	67	202	2	.	91	C	75469779	G	C	75469779	3	2	37	1	0	0	0	0	1	0	0	0	5001	1087	38	4	88	4	EIF2B2	14	75469779	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	10259980	75469779	31879761	171	4505											
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91787522	91787522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC88C	NM_001080414	exon13	c.A1469T	p.E490V	CTCTCCTCCAACA	.	97	22	110	0	.	25	A	91787522	T	A	91787522	3	1	37	1	0	0	0	0	1	0	0	0	2865	1551	54	4	4689	4	CCDC88C	14	91787522	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	16317743	91787522	15562018	172	4506											
FMN1	342184	bcgsc.ca;mdanderson.org	37	15	33194233	33194233	+	Missense_Mutation	SNP	T	T	A	rs199507823		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FMN1	NM_001103184	exon9	c.A2717T	p.H906L	AACTCATGTAAAA	.	32	26	35	1	.	23	A	33194233	T	A	33194233	3	1	37	1	0	0	0	0	1	0	0	0	5949	1464	51	4	909	4	FMN1	15	33194233	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		33194233	69337159	173	4507											
SLC24A5	283652	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	48427084	48427084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A5	NM_205850	exon5	c.T493A	p.S165T	CAGGTCTCAACAC	.	62	51	69	0	.	90	A	48427084	T	A	48427084	3	1	37	1	0	0	0	0	1	0	0	0	14469	1551	54	4	511	4	SLC24A5	15	48427084	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	15232851	48427084	54104308	174	4508											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54306838	54306838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC13C	NM_001080534	exon1	c.T1738A	p.S580T	CTCCTGTCATCTT	.	35	28	44	0	.	51	A	54306838	T	A	54306838	3	1	37	1	0	0	0	0	1	0	0	0	16983	1667	58	4	1740	4	UNC13C	15	54306838	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	5879754	54306838	48224554	175	4509											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101606245	101606246	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRK1	NM_024652	exon32	c.5603_5604del	p.1868_1868del	CTTCCAGTGTGCC	.	70	57	107	0	.	602	-	101606246	GT	-	101606245	7	5	37	1	0	1	0	1	0	0	0	0	9032	1029	36	0	5725	0	LRRK1	15	101606245	Frame_Shift_Del	DEL	GT	TCGA-CC-A5UD-01A-11D-A28X-10	47299407	101606245	925147	176	4510											
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	813260	813260	+	Missense_Mutation	SNP	C	C	T	rs200684663		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MSLN	NM_005823	exon4	c.C113T	p.A38V	CCCTGGCTGGAGA	.	169	49	228	0	C|0.999;T|0.000	91	T	813260	C	T	813260	3	4	37	1	0	0	0	0	1	0	0	0	9881	797	28	3	119	3	MSLN	16	813260	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10		813260	89541493	177	4511											
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1511413	1511413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CLCN7	NM_001287	exon4	c.A344T	p.N115I	GTGTGATTGATCC	.	59	26	68	0	.	92	A	1511413	T	A	1511413	3	1	37	1	0	0	0	0	1	0	0	0	3468	1493	52	4	2161	4	CLCN7	16	1511413	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	698153	1511413	88843340	178	4512											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10032379	10032379	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRIN2A	NM_000833	exon4	c.A444T	p.G148G	GGACGCTCCAAAC	.	29	18	26	0	.	349	A	10032379	T	A	10032379	2	1	37	1	0	0	0	0	0	0	0	1	6779	1538	54	4		4	GRIN2A	16	10032379	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	8520966	10032379	80322374	179	4513											
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23711862	23711862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERN2	NM_033266	exon13	c.A1667T	p.E556V	TCACCTTCAGGGT	.	59	34	58	0	.	322	A	23711862	T	A	23711862	3	1	37	1	0	0	0	0	1	0	0	0	5238	1783	62	4	1297	4	ERN2	16	23711862	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	13679483	23711862	66642891	180	4514											
ZNF629	23361	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	30793273	30793273	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001080417	exon3	c.G2376A	p.Q792Q	TTTTTCCTGGGTG	.	23	9	30	1	.	.	T	30793273	C	T	30793273	2	4	37	1	0	0	0	0	0	0	0	1	18050	680	24	3		3	ZNF629	16	30793273	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	7081411	30793273	59561480	181	4515											
SIAH1	6477	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48395767	48395767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SIAH1	NM_001006610	exon2	c.A666T	p.L222F	TAAGACTAACATG	.	73	59	131	2	.	415	A	48395767	T	A	48395767	3	1	37	1	0	0	0	0	1	0	0	0	14299	1519	53	4	279	4	SIAH1	16	48395767	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	17602494	48395767	41958986	182	4516											
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71007743	71007743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HYDIN	NM_001270974	exon34	c.C5218T	p.P1740S	CAACAGGCTTTTG	.	191	23	162	0	.	92	A	71007743	G	A	71007743	3	1	37	1	0	0	0	0	1	0	0	0	7467	1203	42	3	10359	3	HYDIN	16	71007743	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	22611976	71007743	19347010	183	4517											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon5	c.G469T	p.V157F	CGCGGACGCGGGT	.	82	61	199	2	.	70225	A	7578461	C	A	7578461	3	1	37	1	0	0	0	0	1	0	0	0	16378	536	19	1	829	1	TP53	17	7578461	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10		7578461	73616749	184	4518											
DNAH2	146754	broad.mit.edu;bcgsc.ca	37	17	7699791	7699791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH2	NM_020877	exon49	c.A7684G	p.I2562V	TCCCAGATCATCC	.	70	60	95	1	.	102	G	7699791	A	G	7699791	3	3	37	1	0	0	0	0	1	0	0	0	4602	333	12	2	7878	2	DNAH2	17	7699791	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	121330	7699791	73495419	185	4519											
ZNF286A	57335	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	15619693	15619693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF286A	NM_020652	exon6	c.A655T	p.T219S	TTCCATACACTTG	.	96	49	86	1	.	90	T	15619693	A	T	15619693	3	4	37	1	0	0	0	0	1	0	0	0	17820	391	14	4	673	4	ZNF286A	17	15619693	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	7919902	15619693	65575517	186	4520											
LRRC48	83450	broad.mit.edu;bcgsc.ca	37	17	17910349	17910349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC48	NM_031294	exon12	c.G1214C	p.C405S	CTCAGTGCCGGGA	.	193	40	183	2	.	46	C	17910349	G	C	17910349	3	2	37	1	0	0	0	0	1	0	0	0	9005	1319	46	4	1252	4	LRRC48	17	17910349	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	2290656	17910349	63284861	187	4521											
LGALS9B	284194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	20358665	20358665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGALS9B	NM_001042685	exon5	c.T491A	p.F164Y	TGGGAGAACGGCA	.	479	121	679	1	.	23	T	20358665	A	T	20358665	3	4	37	1	0	0	0	0	1	0	0	0	8749	246	9	4	604	4	LGALS9B	17	20358665	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	2448316	20358665	60836545	188	4522											
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30616020	30616020	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RHBDL3	NM_138328	exon4	c.A504T	p.T168T	GATCACAGTCACG	.	180	106	246	0	.	91	T	30616020	A	T	30616020	2	4	37	1	0	0	0	0	0	0	0	1	13323	175	7	4		4	RHBDL3	17	30616020	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	10257355	30616020	50579190	189	4523											
MRPL45	84311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36478426	36478426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MRPL45	NM_032351	exon8	c.A869T	p.E290V	AACCAGAAGAAGA	.	50	11	86	0	.	90	T	36478426	A	T	36478426	3	4	37	1	0	0	0	0	1	0	0	0	9809	246	9	4	829	4	MRPL45	17	36478426	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	5862406	36478426	44716784	190	4524											
CCR7	1236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38711550	38711550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR7	NM_001838	exon3	c.T581A	p.L194H	TACAGGAGCTCTG	.	139	76	120	2	.	659	T	38711550	A	T	38711550	3	4	37	1	0	0	0	0	1	0	0	0	2946	304	11	4	559	4	CCR7	17	38711550	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	2233124	38711550	42483660	191	4525											
SAMD14	201191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48191392	48191392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAMD14	NM_174920	exon10	c.G1078A	p.G360S	ACTGGCCCACCTG	.	139	41	168	1	.	68	T	48191392	C	T	48191392	3	4	37	1	0	0	0	0	1	0	0	0	13819	623	22	3	267	3	SAMD14	17	48191392	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	9479842	48191392	33003818	192	4526											
C17orf47	284083	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	56621179	56621179	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C17orf47	NM_001038704	exon1	c.T369A	p.V123V	TGGACTAACTTTC	.	165	103	158	1	.	135	T	56621179	A	T	56621179	2	4	37	1	0	0	0	0	0	0	0	1	1858	349	13	4		4	C17orf47	17	56621179	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	8429787	56621179	24574031	193	4527											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72351437	72351437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF19	NM_153209	exon20	c.T2983C	p.S995P	GGATGCTCCCGGC	.	53	10	52	0	.	90	C	72351437	T	C	72351437	3	2	37	1	0	0	0	0	1	0	0	0	8282	1551	54	2	3061	2	KIF19	17	72351437	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	15730258	72351437	8843773	194	4528											
GALK1	2584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73760089	73760089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GALK1	NM_000154	exon2	c.G244T	p.A82S	CATCGGCACCCTC	.	57	17	69	0	.	90	A	73760089	C	A	73760089	3	1	37	1	0	0	0	0	1	0	0	0	6203	710	25	3	962	3	GALK1	17	73760089	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	1408652	73760089	7435121	195	4529											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80049390	80049390	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FASN	NM_004104	exon9	c.G1200A	p.V400V	GATGTGCACGTTG	.	128	36	157	0	.	90	T	80049390	C	T	80049390	2	4	37	1	0	0	0	0	0	0	0	1	5683	697	25	3		3	FASN	17	80049390	Silent	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10	6289301	80049390	1145820	196	4530											
MC2R	4158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13885429	13885429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MC2R	NM_000529	exon2	c.T89C	p.I30T	AAAAATATCTCCT	.	65	23	62	0	.	95	G	13885429	A	G	13885429	3	3	37	1	0	0	0	0	1	0	0	0	9364	449	16	2	808	2	MC2R	18	13885429	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10		13885429	64191819	197	4531											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31320038	31320038	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASXL3	NM_030632	exon11	c.A2670T	p.T890T	AGGGACAGATAAT	.	50	21	53	0	.	49	T	31320038	A	T	31320038	2	4	37	1	0	0	0	0	0	0	0	1	1068	175	7	4		4	ASXL3	18	31320038	Silent	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	17434609	31320038	46757210	198	4532											
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4110509	4110509	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP2K2	NM_030662	exon3	c.A448T	p.M150L	TCACCATGTGTTC	.	17	8	59	0	.	510	A	4110509	T	A	4110509	3	1	37	1	0	0	0	0	1	0	0	0	9237	1464	51	4	790	4	MAP2K2	19	4110509	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		4110509	55018474	199	4533											
RAB3D	9545	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11447930	11447930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAB3D	NM_004283	exon2	c.C146T	p.P49L	AAGGCGGGAGTGA	.	71	53	259	2	.	653	A	11447930	G	A	11447930	3	1	37	1	0	0	0	0	1	0	0	0	12934	1232	43	3	529	3	RAB3D	19	11447930	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	7337421	11447930	47681053	200	4534											
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23543010	23543010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF91	NM_003430	exon4	c.A2771T	p.H924L	GTAAGGTGTGAAG	.	28	9	22	0	.	90	A	23543010	T	A	23543010	3	1	37	1	0	0	0	0	1	0	0	0	18197	1696	59	4	808	4	ZNF91	19	23543010	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	12095080	23543010	35585973	201	4535											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50412454	50412454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP62	NM_153719	exon3	c.A611G	p.Q204R	GCTGGCTGTGTGG	.	86	38	106	0	.	615	C	50412454	T	C	50412454	3	2	37	1	0	0	0	0	1	0	0	0	10768	1580	55	2	961	2	NUP62	19	50412454	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	26869444	50412454	8716529	202	4536											
ZNF841	284371	broad.mit.edu;ucsc.edu	37	19	52570324	52570324	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001136499	exon7	c.A811T	p.R271X	ACACTCTGAAGGC	.	88	36	128	1	.	.	A	52570324	T	A	52570324	4	1	37	1	0	0	0	0	0	1	0	0	18186	1588	55	4	1967	4	ZNF841	19	52570324	Nonsense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	2157870	52570324	6558659	203	4537											
NLRP2	55655	broad.mit.edu;bcgsc.ca	37	19	55496458	55496458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NLRP2	NM_017852	exon7	c.T2074A	p.C692S	GACCTTTGTTCCA	.	51	24	85	2	.	120	A	55496458	T	A	55496458	3	1	37	1	0	0	0	0	1	0	0	0	10477	1812	63	4	2096	4	NLRP2	19	55496458	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	2926134	55496458	3632525	204	4538											
ZNF581	51545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56156253	56156253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF581	NM_016535	exon2	c.A316T	p.S106C	CGACACAGCATCA	.	170	85	229	0	.	44	T	56156253	A	T	56156253	3	4	37	1	0	0	0	0	1	0	0	0	18010	188	7	4	318	4	ZNF581	19	56156253	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	659795	56156253	2972730	205	4539											
ZNF470	388566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57088220	57088220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF470	NM_001001668	exon6	c.T423G	p.C141W	GAAATGTGAAGAC	.	63	25	76	2	.	92	G	57088220	T	G	57088220	3	3	37	1	0	0	0	0	1	0	0	0	17926	1702	59	5	437	5	ZNF470	19	57088220	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	931967	57088220	2040763	206	4540											
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175003	57175003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF835	NM_001005850	exon2	c.T1564A	p.C522S	GTTGACAGGTTTC	.	143	56	188	0	.	72	T	57175003	A	T	57175003	3	4	37	1	0	0	0	0	1	0	0	0	18183	188	7	4	51	4	ZNF835	19	57175003	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	86783	57175003	1953980	207	4541											
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20585826	20585826	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RALGAPA2	NM_020343	exon15	c.A2031T	p.R677R	TTTGCCTCGTTGC	.	97	23	99	0	.	24	A	20585826	T	A	20585826	2	1	37	1	0	0	0	0	0	0	0	1	13014	1538	54	4		4	RALGAPA2	20	20585826	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		20585826	42439694	208	4542											
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56227157	56227157	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PMEPA1	NM_020182	exon4	c.A816T	p.A272A	GATGGCTGCGCTC	.	37	12	27	0	.	227	A	56227157	T	A	56227157	2	1	37	1	0	0	0	0	0	0	0	1	12132	1567	55	4		4	PMEPA1	20	56227157	Silent	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	35641331	56227157	6798363	209	4543											
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20102931	20102931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRMT2A	NM_001257994	exon4	c.G748A	p.G250R	CCACCCCGACGCC	.	58	21	75	0	.	153	T	20102931	C	T	20102931	3	4	37	1	0	0	0	0	1	0	0	0	16562	652	23	1	1165	1	TRMT2A	22	20102931	Missense_Mutation	SNP	C	TCGA-CC-A5UD-01A-11D-A28X-10		20102931	31201635	210	4544											
ELFN2	114794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37771020	37771020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELFN2	NM_052906	exon3	c.C555A	p.N185K	GAAGGGGTTGCCG	.	118	43	181	0	.	70	T	37771020	G	T	37771020	3	4	37	1	0	0	0	0	1	0	0	0	5058	1252	44	3	1911	3	ELFN2	22	37771020	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	17668089	37771020	13533546	211	4545											
NOL12	79159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38082401	38082401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOL12	NM_024313	exon1	c.T2A	p.M1K	CTGCTATGGGCCG	.	50	20	66	0	.	90	A	38082401	T	A	38082401	3	1	37	1	0	0	0	0	1	0	0	0	10522	1464	51	4	4	4	NOL12	22	38082401	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	311381	38082401	13222165	212	4546											
SMCR7L	54471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39909580	39909580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SMCR7L	NM_019008	exon6	c.G644T	p.W215L	ACCTGTGGTCATG	.	72	29	112	0	.	90	T	39909580	G	T	39909580	3	4	37	1	0	0	0	0	1	0	0	0	14791	1357	47	3	658	3	SMCR7L	22	39909580	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	1827179	39909580	11394986	213	4547											
ARX	170302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	25033712	25033712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARX	NM_139058	exon1	c.A143T	p.Q48L	AAGCTCTGCGCGG	.	48	40	132	0	.	130	A	25033712	T	A	25033712	3	1	37	1	0	0	0	0	1	0	0	0	1004	1580	55	4	1565	4	ARX	23	25033712	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10		25033712	130236848	214	4548											
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71425152	71425152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERCC6L	NM_017669	exon2	c.C3465A	p.N1155K	GGACTTGTTTTCT	.	49	39	59	0	.	93	T	71425152	G	T	71425152	3	4	37	1	0	0	0	0	1	0	0	0	5218	1368	48	3	291	3	ERCC6L	23	71425152	Missense_Mutation	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	46391440	71425152	83845408	215	4549											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79989645	79989645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	BRWD3	NM_153252	exon11	c.A1058T	p.E353V	ATTTTCTCAGGAA	.	63	6	81	0	.	134	A	79989645	T	A	79989645	3	1	37	1	0	0	0	0	1	0	0	0	1526	1551	54	4	4474	4	BRWD3	23	79989645	Missense_Mutation	SNP	T	TCGA-CC-A5UD-01A-11D-A28X-10	8564493	79989645	75280915	216	4550											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83126557	83126557	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CYLC1	NM_021118	exon3	c.G156A	p.L52L	ACCTTTGAAATCA	.	58	35	99	0	.	112	A	83126557	G	A	83126557	2	1	37	1	0	0	0	0	0	0	0	1	4141	1281	45	3		3	CYLC1	23	83126557	Silent	SNP	G	TCGA-CC-A5UD-01A-11D-A28X-10	3136912	83126557	72144003	217	4551											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134994077	134994077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAGE1	NM_018666	exon18	c.A2486T	p.Y829F	TAAAATATCAATT	.	37	31	55	0	.	133	T	134994077	A	T	134994077	3	4	37	1	0	0	0	0	1	0	0	0	13809	449	16	4	2552	4	SAGE1	23	134994077	Missense_Mutation	SNP	A	TCGA-CC-A5UD-01A-11D-A28X-10	51867520	134994077	20276483	218	4552											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17331929	17331929	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ATP13A2	NM_001141973	exon3	c.G228T	p.R76R	CCGGAGCCGCAGC	.	199	35	235	0	.	93	A	17331929	C	A	17331929	2	1	38	1	0	0	0	0	0	0	0	1	1124	726	26	3		3	ATP13A2	1	17331929	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10		17331929	231918692	1	4553											
LAPTM5	7805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31208055	31208055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LAPTM5	NM_006762	exon7	c.G664T	p.V222L	CCTCCACCGAGTT	.	91	12	94	0	.	226	A	31208055	C	A	31208055	3	1	38	1	0	0	0	0	1	0	0	0	8626	507	18	3	132	3	LAPTM5	1	31208055	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	13876126	31208055	218042566	2	4554											
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32741654	32741655	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	.	.	.	p.H208N	GGTCCGCCATTAC	.	158	116	126	0	.	.	AA	32741655	CC	AA	32741654	3	1	38	1	0	0	0	0	1	0	0	0	8676	726	26	3	643	3	LCK	1	32741654	Missense_Mutation	DNP	CC	TCGA-CC-A5UE-01A-11D-A28X-10	1533599	32741654	216508967	3	4555											
HECTD3	79654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45469577	45469577	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HECTD3	NM_024602	exon19	c.G2379A	p.T793T	GCGGCCCGTGACA	.	182	53	170	0	.	658	T	45469577	C	T	45469577	2	4	38	1	0	0	0	0	0	0	0	1	7041	639	23	1		1	HECTD3	1	45469577	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	12727923	45469577	203781044	4	4556											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103478004	103478004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	COL11A1	NM_080629	exon14	c.G1630C	p.G544R	TTGGGCCAGGTGG	.	204	148	139	0	.	586	G	103478004	C	G	103478004	3	3	38	1	0	0	0	0	1	0	0	0	3667	594	21	4	4042	4	COL11A1	1	103478004	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	58008427	103478004	145772617	5	4557											
NBPF10	100132406	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145359172	145359172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_001039703	exon72	c.G9112T	p.A3038S	GGCTTGGCTGTTG	.	89	21	132	1	.	.	T	145359172	G	T	145359172	3	4	38	1	0	0	0	0	1	0	0	0	10193	1203	42	3	9398	3	NBPF10	1	145359172	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	41881168	145359172	103891449	6	4558											
TCHH	7062	hgsc.bcm.edu;bcgsc.ca	37	1	152080252	152080253	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	.	.	.	p.P1814S	TGTTGGGGGCGCA	.	86	10	89	0	.	.	CT	152080253	GG	CT	152080252	3	2	38	1	0	0	0	0	1	0	0	0	15697	1232	43	4	394	4	TCHH	1	152080252	Missense_Mutation	DNP	GG	TCGA-CC-A5UE-01A-11D-A28X-10	6721080	152080252	97170369	7	4559											
TCHH	7062	hgsc.bcm.edu;bcgsc.ca	37	1	152080284	152080284	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TCHH	NM_007113	exon3	c.A5409C	p.L1803L	CTGGCGTAGCTGT	.	79	6	93	0	.	72	G	152080284	T	G	152080284	2	3	38	1	0	0	0	0	0	0	0	1	15697	1625	57	5		5	TCHH	1	152080284	Silent	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	32	152080284	97170337	8	4560											
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177934193	177934193	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SEC16B	NM_033127	exon4	c.G522A	p.E174E	GTGGGTCTCACTA	.	114	85	109	0	.	93	T	177934193	C	T	177934193	2	4	38	1	0	0	0	0	0	0	0	1	13987	912	32	3		3	SEC16B	1	177934193	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	25853909	177934193	71316428	9	4561											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237850763	237850763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RYR2	NM_001035	exon63	c.G9026T	p.C3009F	TATTCTGCAAACT	.	93	12	111	0	.	158	T	237850763	G	T	237850763	3	4	38	1	0	0	0	0	1	0	0	0	13769	1319	46	3	9276	3	RYR2	1	237850763	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	59916570	237850763	11399858	10	4562											
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	243437866	243437866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SDCCAG8	NM_006642	exon4	c.A328G	p.T110A	GAGGAAACCAATA	.	146	22	160	0	.	90	G	243437866	A	G	243437866	3	3	38	1	0	0	0	0	1	0	0	0	13959	43	2	2	342	2	SDCCAG8	1	243437866	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	5587103	243437866	5812755	11	4563											
OR2T27	403239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248813752	248813752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	OR2T27	NM_001001824	exon1	c.T434C	p.V145A	GCCGCCACAATCA	.	267	100	427	0	.	47	G	248813752	A	G	248813752	3	3	38	1	0	0	0	0	1	0	0	0	11021	159	6	2	522	2	OR2T27	1	248813752	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	5375886	248813752	436869	12	4564											
GCKR	2646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27741789	27741789	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GCKR	NM_001486	exon17	c.G1557T	p.A519A	GCGGGCGCTGGCC	.	62	21	85	0	.	92	T	27741789	G	T	27741789	2	4	38	1	0	0	0	0	0	0	0	1	6294	1074	38	1		1	GCKR	2	27741789	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		27741789	215457584	13	4565											
SPAST	6683	broad.mit.edu;mdanderson.org	37	2	32289161	32289161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SPAST	NM_199436	exon1	c.G261A	p.M87I	CCTCATGGCAGCC	.	30	11	40	0	.	153	A	32289161	G	A	32289161	3	1	38	1	0	0	0	0	1	0	0	0	14996	1348	47	3	263	3	SPAST	2	32289161	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	4547372	32289161	210910212	14	4566											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33585803	33585803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LTBP1	NM_206943	exon27	c.G4140T	p.W1380C	GGGATGGGGAGAT	.	136	43	134	0	.	230	T	33585803	G	T	33585803	3	4	38	1	0	0	0	0	1	0	0	0	9073	1241	43	3	4301	3	LTBP1	2	33585803	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	1296642	33585803	209613570	15	4567											
EIF2AK2	5610	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37349804	37349804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	EIF2AK2	NM_001135651	exon12	c.G912T	p.K304N	CTCCGCCTTCCTA	.	109	59	147	1	.	794	A	37349804	C	A	37349804	3	1	38	1	0	0	0	0	1	0	0	0	4997	680	24	3	767	3	EIF2AK2	2	37349804	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	3764001	37349804	205849569	16	4568											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39222434	39222434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SOS1	NM_005633	exon20	c.A3176G	p.E1059G	CTTGGCTCCTGCT	.	138	70	144	0	.	851	C	39222434	T	C	39222434	3	2	38	1	0	0	0	0	1	0	0	0	14936	1551	54	2	841	2	SOS1	2	39222434	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	1872630	39222434	203976939	17	4569											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	50463974	50463974	+	Silent	SNP	G	G	T	rs199546979	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NRXN1	NM_001135659	exon19	c.C3619A	p.R1207R	CCACTCGCACCAA	.	153	66	147	0	.	92	T	50463974	G	T	50463974	2	4	38	1	0	0	0	0	0	0	0	1	10665	1095	38	1		1	NRXN1	2	50463974	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	11241540	50463974	192735399	18	4570											
EFEMP1	2202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56144961	56144961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	EFEMP1	NM_001039349	exon4	c.T356C	p.V119A	CTGGCCACAAAAC	.	76	35	75	0	.	520	G	56144961	A	G	56144961	3	3	38	1	0	0	0	0	1	0	0	0	4941	159	6	2	1157	2	EFEMP1	2	56144961	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	5680987	56144961	187054412	19	4571											
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96798324	96798324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ASTL	NM_001002036	exon6	c.G592T	p.D198Y	CCCGGTCGGCCCG	.	212	101	267	0	.	90	A	96798324	C	A	96798324	3	1	38	1	0	0	0	0	1	0	0	0	1063	884	31	1	718	1	ASTL	2	96798324	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	40653363	96798324	146401049	20	4572											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	105886085	105886085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TGFBRAP1	NM_004257	exon11	c.C2050T	p.H684Y	GGATATGCAGCGC	.	84	31	98	0	.	91	A	105886085	G	A	105886085	3	1	38	1	0	0	0	0	1	0	0	0	15821	1319	46	3	540	3	TGFBRAP1	2	105886085	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	9087761	105886085	137313288	21	4573											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu	37	2	109369517	109369517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RANBP2	NM_006267	exon13	c.1819delA	p.K607fs	TATTGGAAGAAAG	.	516	114	650	0	.	675	-	109369517	A	-	109369517	7	5	38	1	0	1	0	1	0	0	0	0	13028	247	9	0	1869	0	RANBP2	2	109369517	Frame_Shift_Del	DEL	A	TCGA-CC-A5UE-01A-11D-A28X-10	3483432	109369517	133829856	22	4574											
POTEF	728378	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	130832599	130832599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	POTEF	NM_001099771	exon17	c.C2446T	p.R816C	TCTCGCGGTTGGC	.	446	225	526	2	.	27	A	130832599	G	A	130832599	3	1	38	1	0	0	0	0	1	0	0	0	12265	1116	39	1	785	1	POTEF	2	130832599	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	21463082	130832599	112366774	23	4575											
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136579639	136579639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LCT	NM_002299	exon5	c.G937A	p.G313R	CAAACCCAATGGT	.	76	16	77	0	.	101	T	136579639	C	T	136579639	3	4	38	1	0	0	0	0	1	0	0	0	8693	594	21	3	4898	3	LCT	2	136579639	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	5747040	136579639	106619734	24	4576											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137988760	137988760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	THSD7B	.	.	.	.	TCAGATGGGAAAC	.	154	50	177	1	.	75	A	137988760	G	A	137988760	3	1	38	1	0	0	0	0	1	0	0	0	15877	1348	47	3	1803	3	THSD7B	2	137988760	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	1409121	137988760	105210613	25	4577											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179463972	179463972	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TTN	NM_001267550	exon290	c.C56548T	p.L18850L	CTTCTAGCAATTT	.	112	51	123	0	.	636	A	179463972	G	A	179463972	2	1	38	1	0	0	0	0	0	0	0	1	16732	962	34	3		3	TTN	2	179463972	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	41475212	179463972	63735401	26	4578											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179665290	179665290	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TTN	NM_001267550	exon4	c.C415A	p.R139R	CATCCCGGTAGAA	.	132	51	108	0	.	636	T	179665290	G	T	179665290	2	4	38	1	0	0	0	0	0	0	0	1	16732	1115	39	1		1	TTN	2	179665290	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	201318	179665290	63534083	27	4579											
MYO1B	4430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192273885	192273885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MYO1B	NM_001161819	exon26	c.G2747C	p.R916T	TAAAAAGGATTTT	.	100	49	85	0	.	238	C	192273885	G	C	192273885	3	2	38	1	0	0	0	0	1	0	0	0	10069	1000	35	4	2845	4	MYO1B	2	192273885	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	12608595	192273885	50925488	28	4580											
CTLA4	1493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204732726	204732726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CTLA4	NM_005214	exon1	c.C61A	p.P21T	ACCTGGCCCTGCA	.	91	38	113	0	.	90	A	204732726	C	A	204732726	3	1	38	1	0	0	0	0	1	0	0	0	4011	739	26	3	63	3	CTLA4	2	204732726	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	12458841	204732726	38466647	29	4581											
PARD3B	117583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	205829899	205829899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PARD3B	NM_205863	exon3	c.G247A	p.E83K	GAACAAGAACCAC	.	72	16	67	0	.	140	A	205829899	G	A	205829899	3	1	38	1	0	0	0	0	1	0	0	0	11444	943	33	3	257	3	PARD3B	2	205829899	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	1097173	205829899	37369474	30	4582											
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209141531	209141531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PIKFYVE	NM_015040	exon4	c.G418C	p.E140Q	CTCAAGGAAATCA	.	125	65	109	0	.	583	C	209141531	G	C	209141531	3	2	38	1	0	0	0	0	1	0	0	0	11924	1175	41	4	428	4	PIKFYVE	2	209141531	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	3311632	209141531	34057842	31	4583											
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216946462	216946462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PECR	NM_018441	exon1	c.G3T	p.M1I	GGAGGCCATCCCT	.	81	45	111	0	.	90	A	216946462	C	A	216946462	3	1	38	1	0	0	0	0	1	0	0	0	11717	594	21	3	940	3	PECR	2	216946462	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	7804931	216946462	26252911	32	4584											
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220500114	220500114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SLC4A3	NM_201574	exon13	c.G1949T	p.R650L	TGCTGCGCTCCGT	.	239	114	345	0	.	157	T	220500114	G	T	220500114	3	4	38	1	0	0	0	0	1	0	0	0	14655	1087	38	1	1995	1	SLC4A3	2	220500114	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	3553652	220500114	22699259	33	4585											
UGT1A3	54659	ucsc.edu;bcgsc.ca	37	2	234638229	234638229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	UGT1A3	NM_019093	exon1	c.C457T	p.P153S	ACAGACCCCGTTA	.	230	34	215	2	.	24	T	234638229	C	T	234638229	3	4	38	1	0	0	0	0	1	0	0	0	16943	623	22	3	459	3	UGT1A3	2	234638229	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	14138115	234638229	8561144	34	4586											
KLHL30	377007	ucsc.edu;bcgsc.ca	37	2	239054430	239054430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	KLHL30	NM_198582	exon5	c.C1107A	p.N369K	CACCAACCACGCC	.	330	111	480	2	.	22	A	239054430	C	A	239054430	3	1	38	1	0	0	0	0	1	0	0	0	8384	506	18	3	1121	3	KLHL30	2	239054430	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	4416201	239054430	4144943	35	4587											
NEK10	152110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27346421	27346421	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NEK10	NM_199347	exon13	c.A845T	p.Q282L	TTCACCTGGGGCT	.	57	22	80	1	.	695	A	27346421	T	A	27346421	3	1	38	1	0	0	0	0	1	0	0	0	10322	1580	55	4	1345	4	NEK10	3	27346421	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10		27346421	170676009	36	4588											
PRSS45	377047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46784019	46784019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_199183	exon4	c.G508A	p.G170R	ACACCCCAGCCAG	.	137	59	159	0	.	.	T	46784019	C	T	46784019	3	4	38	1	0	0	0	0	1	0	0	0	12629	594	21	3	182	3	PRSS45	3	46784019	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	19437598	46784019	151238411	37	4589											
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	55717878	55717878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ERC2	NM_015576	exon16	c.G2851C	p.E951Q	TGCCCTCCTCGTC	.	87	27	153	0	.	24	G	55717878	C	G	55717878	3	3	38	1	0	0	0	0	1	0	0	0	5211	864	30	4	20	4	ERC2	3	55717878	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	8933859	55717878	142304552	38	4590											
LMOD3	56203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69167886	69167886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LMOD3	NM_198271	exon2	c.C1620A	p.N540K	AATGTCGTTTAGC	.	137	46	197	0	.	23	T	69167886	G	T	69167886	3	4	38	1	0	0	0	0	1	0	0	0	8858	1136	40	1	70	1	LMOD3	3	69167886	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	13450008	69167886	128854544	39	4591											
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132378583	132378583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ACAD11	NM_032169	exon1	c.G13T	p.A5S	CAGTAGCACCTGG	.	72	34	125	0	.	91	A	132378583	C	A	132378583	3	1	38	1	0	0	0	0	1	0	0	0	109	710	25	3	2409	3	ACAD11	3	132378583	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	63210697	132378583	65643847	40	4592											
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154146874	154146874	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GPR149	NM_001038705	exon1	c.C531T	p.R177R	GGGCGTGCGCACG	.	33	19	54	0	.	96	A	154146874	G	A	154146874	2	1	38	1	0	0	0	0	0	0	0	1	6654	1306	46	3		3	GPR149	3	154146874	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	21768291	154146874	43875556	41	4593											
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197562626	197562626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRCH3	NM_032773	exon9	c.G1184A	p.G395E	CCAAGGGACCAGA	.	88	33	119	0	.	91	A	197562626	G	A	197562626	3	1	38	1	0	0	0	0	1	0	0	0	8934	1174	41	3	1218	3	LRCH3	3	197562626	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	43415752	197562626	459804	42	4594											
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38798659	38798659	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TLR1	NM_003263	exon4	c.C1794T	p.T598T	GAGGGAGGTCACA	.	128	75	205	1	.	524	A	38798659	G	A	38798659	2	1	38	1	0	0	0	0	0	0	0	1	15946	987	35	3		3	TLR1	4	38798659	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		38798659	152355617	43	4595											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74272392	74272393	+	Frame_Shift_Ins	INS	-	-	ATCA	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ALB	NM_000477	exon3	c.184_185insATCA	p.D62fs	TTTGAAGATCATG	.	44	29	71	0	.	96	ATCA	74272393	-	ATCA	74272392	7	5	38	1	0	1	1	0	0	0	0	0	486	942	33	0	194	0	ALB	4	74272392	Frame_Shift_Ins	INS	-	TCGA-CC-A5UE-01A-11D-A28X-10	35473733	74272392	116881884	44	4596											
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155505651	155505651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FGA	NM_000508	exon6	c.C2226G	p.F742L	TACCCGGAAGTGA	.	112	82	162	0	.	93	C	155505651	G	C	155505651	3	2	38	1	0	0	0	0	1	0	0	0	5830	1165	41	4	378	4	FGA	4	155505651	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	81233259	155505651	35648625	45	4597											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169305825	169305825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DDX60L	NM_001012967	exon30	c.C4054G	p.L1352V	GGACCAGGGTTAT	.	354	173	328	0	.	69	C	169305825	G	C	169305825	3	2	38	1	0	0	0	0	1	0	0	0	4379	991	35	4	1102	4	DDX60L	4	169305825	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	13800174	169305825	21848451	46	4598											
KIAA0947	23379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5461287	5461287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	KIAA0947	NM_015325	exon13	c.G1840A	p.D614N	GATGATGACTCAG	.	112	58	105	1	.	48	A	5461287	G	A	5461287	3	1	38	1	0	0	0	0	1	0	0	0	8202	1290	45	3	1890	3	KIAA0947	5	5461287	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		5461287	175453973	47	4599											
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	9066573	9066573	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SEMA5A	NM_003966	exon17	c.G2259A	p.R753R	ACAGTACCGCATT	.	157	50	181	0	.	91	T	9066573	C	T	9066573	2	4	38	1	0	0	0	0	0	0	0	1	14037	494	18	3		3	SEMA5A	5	9066573	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	3605286	9066573	171848687	48	4600											
FAM105A	54491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14601219	14601219	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FAM105A	NM_019018	exon2	c.G210T	p.G70G	TTCAGGGCACAAG	.	56	24	63	0	.	91	T	14601219	G	T	14601219	2	4	38	1	0	0	0	0	0	0	0	1	5387	1190	42	3		3	FAM105A	5	14601219	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	5534646	14601219	166314041	49	4601											
LMBRD2	92255	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36136503	36136503	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LMBRD2	NM_001007527	exon6	c.A655T	p.R219W	AACCCCTTTTTGC	.	115	46	117	0	.	90	A	36136503	T	A	36136503	3	1	38	1	0	0	0	0	1	0	0	0	8843	1608	56	4	1484	4	LMBRD2	5	36136503	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	21535284	36136503	144778757	50	4602											
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141337154	141337154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PCDH12	NM_016580	exon1	c.C263G	p.T88R	CTGCCTGTGCTGA	.	194	102	236	0	.	93	C	141337154	G	C	141337154	3	2	38	1	0	0	0	0	1	0	0	0	11510	1377	48	4	3307	4	PCDH12	5	141337154	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	105200651	141337154	39578106	51	4603											
HAVCR1	26762	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156476055	156476055	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HAVCR1	NM_001099414	exon5	c.A775T	p.T259S	CTGTTGTGTAAGA	.	115	47	195	1	.	92	A	156476055	T	A	156476055	3	1	38	1	0	0	0	0	1	0	0	0	6973	1696	59	4	339	4	HAVCR1	5	156476055	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	15138901	156476055	24439205	52	4604											
DOCK2	1794	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169230139	169230139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DOCK2	NM_004946	exon26	c.C2632A	p.Q878K	CAACACCAGGTCC	.	134	60	198	1	.	97	A	169230139	C	A	169230139	3	1	38	1	0	0	0	0	1	0	0	0	4687	595	21	3	2734	3	DOCK2	5	169230139	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	12754084	169230139	11685121	53	4605											
HNRNPH1	3187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179043937	179043937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HNRNPH1	NM_001257293	exon11	c.C1140A	p.F380L	ATTCAAGAAGAGT	.	173	64	269	0	.	22	T	179043937	G	T	179043937	3	4	38	1	0	0	0	0	1	0	0	0	7266	933	33	3	221	3	HNRNPH1	5	179043937	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	9813798	179043937	1871323	54	4606											
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	16327490	16327490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ATXN1	NM_001128164	exon7	c.C1052T	p.S351L	GGAACCGACTTGC	.	92	8	97	0	.	93	A	16327490	G	A	16327490	3	1	38	1	0	0	0	0	1	0	0	0	1209	1059	37	1	1403	1	ATXN1	6	16327490	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		16327490	154787577	55	4607											
PKHD1	5314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920438	51920438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PKHD1	NM_170724	exon19	c.G1783T	p.V595F	TAAGGACAAGGTG	.	94	28	107	1	.	603	A	51920438	C	A	51920438	3	1	38	1	0	0	0	0	1	0	0	0	11971	478	17	3	10676	3	PKHD1	6	51920438	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	35592948	51920438	119194629	56	4608											
ZDHHC4	55146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6620253	6620253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZDHHC4	NM_018106	exon3	c.A61G	p.I21V	GTTCTTATCTGCG	.	168	88	237	1	.	154	G	6620253	A	G	6620253	3	3	38	1	0	0	0	0	1	0	0	0	17614	449	16	2	63	2	ZDHHC4	7	6620253	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10		6620253	152518410	57	4609											
CRHR2	1395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30721587	30721587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CRHR2	NM_001202475	exon3	c.C254A	p.A85D	ACGAGGGCTCCGG	.	56	10	102	0	.	524	T	30721587	G	T	30721587	3	4	38	1	0	0	0	0	1	0	0	0	3872	1203	42	3	1106	3	CRHR2	7	30721587	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	24101334	30721587	128417076	58	4610											
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31378831	31378831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NEUROD6	NM_022728	exon2	c.T52A	p.C18S	TTCTGCACATCTG	.	28	18	26	0	.	92	T	31378831	A	T	31378831	3	4	38	1	0	0	0	0	1	0	0	0	10351	159	6	4	965	4	NEUROD6	7	31378831	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	657244	31378831	127759832	59	4611											
C7orf25	79020	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42949411	42949411	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	C7orf25	NM_001099858	exon2	c.G1263A	p.G421G	TCCCGTCCCAAAA	.	134	81	126	0	.	69	T	42949411	C	T	42949411	2	4	38	1	0	0	0	0	0	0	0	1	2380	842	30	3		3	C7orf25	7	42949411	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	11570580	42949411	116189252	60	4612											
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100174773	100174773	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRCH4	NM_002319	exon12	c.T1300C	p.L434L	GCTTCAAGAGGCT	.	67	21	133	0	.	136	G	100174773	A	G	100174773	2	3	38	1	0	0	0	0	0	0	0	1	8935	69	3	2		2	LRCH4	7	100174773	Silent	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	57225362	100174773	58963890	61	4613											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117351762	117351762	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CTTNBP2	NM_033427	exon23	c.A4821T	p.S1607S	AACTCTTGAAACA	.	42	23	40	0	.	94	A	117351762	T	A	117351762	2	1	38	1	0	0	0	0	0	0	0	1	4045	1799	63	4		4	CTTNBP2	7	117351762	Silent	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	17176989	117351762	41786901	62	4614											
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122303420	122303420	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CADPS2	NM_001167940	exon3	c.A657G	p.K219K	TGGCTGTTTGCAC	.	98	61	90	0	.	94	C	122303420	T	C	122303420	2	2	38	1	0	0	0	0	0	0	0	1	2571	1722	60	2		2	CADPS2	7	122303420	Silent	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	4951658	122303420	36835243	63	4615											
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127721412	127721412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SND1	NM_014390	exon18	c.G1969C	p.V657L	ATGCAGGTCTGGG	.	92	53	125	0	.	92	C	127721412	G	C	127721412	3	2	38	1	0	0	0	0	1	0	0	0	14844	1275	44	4	2039	4	SND1	7	127721412	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	5417992	127721412	31417251	64	4616											
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128133954	128133954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	METTL2B	NM_018396	exon6	c.A766G	p.I256V	CTTGATATTATCA	.	160	103	174	0	.	23	G	128133954	A	G	128133954	3	3	38	1	0	0	0	0	1	0	0	0	9500	449	16	2	788	2	METTL2B	7	128133954	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	412542	128133954	31004709	65	4617											
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139285298	139285298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HIPK2	NM_022740	exon11	c.A2300T	p.Q767L	GCAGGCTGCTGCA	.	166	86	213	0	.	785	A	139285298	T	A	139285298	3	1	38	1	0	0	0	0	1	0	0	0	7117	1580	55	4	1316	4	HIPK2	7	139285298	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	11151344	139285298	19853365	66	4618											
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139655333	139655333	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TBXAS1	NM_001166253	exon8	c.T756A	p.P252P	GGCCCCTGAGGAT	.	45	9	61	0	.	155	A	139655333	T	A	139655333	2	1	38	1	0	0	0	0	0	0	0	1	15661	1567	55	4		4	TBXAS1	7	139655333	Silent	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	370035	139655333	19483330	67	4619											
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	15397946	15397946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TUSC3	NM_178234	exon1	c.G7T	p.A3S	ATGGGGGCCCGGG	.	17	8	40	0	.	516	T	15397946	G	T	15397946	3	4	38	1	0	0	0	0	1	0	0	0	16775	1203	42	3	9	3	TUSC3	8	15397946	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		15397946	130966076	68	4620											
SCARA5	286133	broad.mit.edu;bcgsc.ca	37	8	27779611	27779611	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SCARA5	NM_173833	exon4	c.G393T	p.A131A	CTGCAGCGCGTCC	.	40	15	85	1	.	91	A	27779611	C	A	27779611	2	1	38	1	0	0	0	0	0	0	0	1	13880	755	27	1		1	SCARA5	8	27779611	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	12381665	27779611	118584411	69	4621											
GPR124	25960	broad.mit.edu;bcgsc.ca	37	8	37693183	37693183	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GPR124	NM_032777	exon13	c.C1945A	p.R649R	GTCTTCCGAAATG	.	59	17	121	1	.	157	A	37693183	C	A	37693183	2	1	38	1	0	0	0	0	0	0	0	1	6638	644	23	1		1	GPR124	8	37693183	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	9913572	37693183	108670839	70	4622											
XKR4	114786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56015754	56015754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	XKR4	NM_052898	exon1	c.G706T	p.A236S	AGCGGGGCTACCC	.	142	64	162	1	.	92	T	56015754	G	T	56015754	3	4	38	1	0	0	0	0	1	0	0	0	17430	1203	42	3	708	3	XKR4	8	56015754	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	18322571	56015754	90348268	71	4623											
AZIN1	51582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103842142	103842142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	AZIN1	NM_015878	exon11	c.A927T	p.E309D	GGCTGGTTCATCA	.	129	88	94	0	.	90	A	103842142	T	A	103842142	3	1	38	1	0	0	0	0	1	0	0	0	1242	1722	60	4	431	4	AZIN1	8	103842142	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	47826388	103842142	42521880	72	4624											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73736204	73736204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TRPM3	NM_001007471	exon1	c.T67A	p.W23R	TCCACCAGGAAAA	.	68	34	88	0	.	521	T	73736204	A	T	73736204	3	4	38	1	0	0	0	0	1	0	0	0	16584	188	7	4	5279	4	TRPM3	9	73736204	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10		73736204	67477227	73	4625											
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	101798606	101798607	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	COL15A1	NM_001855	exon21	c.2337_2338insT	p.G779fs	AAGGGGGATGGAT	.	49	11	96	0	.	96	T	101798607	-	T	101798606	7	5	38	1	0	1	1	0	0	0	0	0	3672	1161	41	0	2419	0	COL15A1	9	101798606	Frame_Shift_Ins	INS	-	TCGA-CC-A5UE-01A-11D-A28X-10	28062402	101798606	39414825	74	4626											
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114332480	114332480	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PTGR1	NM_001146108	exon9	c.770delC	p.P257fs	ATCTCTGGGGGTG	.	56	11	68	0	.	90	-	114332480	G	-	114332480	7	5	38	1	0	1	0	1	0	0	0	0	12753	1348	47	0	258	0	PTGR1	9	114332480	Frame_Shift_Del	DEL	G	TCGA-CC-A5UE-01A-11D-A28X-10	12533874	114332480	26880951	75	4627											
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115812084	115812084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZFP37	NM_003408	exon2	c.C201A	p.N67K	GGCTTGGTTGCAG	.	121	66	156	0	.	92	T	115812084	G	T	115812084	3	4	38	1	0	0	0	0	1	0	0	0	17645	1252	44	3	1703	3	ZFP37	9	115812084	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	1479604	115812084	25401347	76	4628											
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125391806	125391806	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	OR1B1	NM_001004450	exon1	c.C9T	p.S3S	GGCAAAGCTCATC	.	94	40	94	0	.	68	A	125391806	G	A	125391806	2	1	38	1	0	0	0	0	0	0	0	1	10951	962	34	3		3	OR1B1	9	125391806	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	9579722	125391806	15821625	77	4629											
NTNG2	84628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135117276	135117276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NTNG2	NM_032536	exon8	c.C1371A	p.D457E	GTGCGACGACGAC	.	14	5	36	0	.	90	A	135117276	C	A	135117276	3	1	38	1	0	0	0	0	1	0	0	0	10705	535	19	1	1397	1	NTNG2	9	135117276	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	9725470	135117276	6096155	78	4630											
GPSM1	26086	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139244159	139244159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	GPSM1	NM_001145638	exon11	c.G1399C	p.E467Q	CCCCGGGAGGGCA	.	45	9	118	1	.	90	C	139244159	G	C	139244159	3	2	38	1	0	0	0	0	1	0	0	0	6734	1175	41	4	1608	4	GPSM1	9	139244159	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	4126883	139244159	1969272	79	4631											
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140093451	140093451	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TPRN	NM_001128228	exon1	c.C1713T	p.S571S	TCTTGAGGAGCCA	.	56	12	115	0	.	90	A	140093451	G	A	140093451	2	1	38	1	0	0	0	0	0	0	0	1	16418	987	35	3		3	TPRN	9	140093451	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	849292	140093451	1119980	80	4632											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	12858286	12858286	+	Silent	SNP	G	G	A	rs199768578		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CAMK1D	NM_153498	exon8	c.G792A	p.P264P	GGACCCGAATAAA	.	231	22	378	0	G|0.999;A|0.000	334	A	12858286	G	A	12858286	2	1	38	1	0	0	0	0	0	0	0	1	2597	1045	37	1		1	CAMK1D	10	12858286	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		12858286	122676461	81	4633											
SYT15	83849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46965864	46965864	+	Missense_Mutation	SNP	G	G	T	rs202146218	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SYT15	NM_031912	exon5	c.C673A	p.Q225K	CCCTCTGGGTGAT	.	90	31	142	0	.	22	T	46965864	G	T	46965864	3	4	38	1	0	0	0	0	1	0	0	0	15468	1357	47	3	662	3	SYT15	10	46965864	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	34107578	46965864	88568883	82	4634											
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73765630	73765630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CHST3	NM_004273	exon2	c.C30A	p.D10E	CCAGGACTGCCGG	.	62	47	95	0	.	90	A	73765630	C	A	73765630	3	1	38	1	0	0	0	0	1	0	0	0	3405	564	20	3	32	3	CHST3	10	73765630	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	26799766	73765630	61769117	83	4635											
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100021841	100021841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LOXL4	NM_032211	exon3	c.G407A	p.R136H	CGATGGCGCCGGG	.	51	11	75	0	.	230	T	100021841	C	T	100021841	3	4	38	1	0	0	0	0	1	0	0	0	8902	768	27	1	1915	1	LOXL4	10	100021841	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	26256211	100021841	35512906	84	4636											
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103921354	103921354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NOLC1	NM_004741	exon11	c.G1783T	p.A595S	AAGGAGGCAGAGA	.	45	33	99	0	.	91	T	103921354	G	T	103921354	3	4	38	1	0	0	0	0	1	0	0	0	10529	1203	42	3	1825	3	NOLC1	10	103921354	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	3899513	103921354	31613393	85	4637											
SFXN2	118980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104489489	104489489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SFXN2	NM_178858	exon6	c.C517T	p.P173S	GCGCCGCCCTTGG	.	25	21	33	0	.	90	T	104489489	C	T	104489489	3	4	38	1	0	0	0	0	1	0	0	0	14195	739	26	3	535	3	SFXN2	10	104489489	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	568135	104489489	31045258	86	4638											
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116061116	116061116	+	Silent	SNP	A	A	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	AFAP1L2	NM_032550	exon13	c.T1539G	p.A513A	TACCGCAGCTGTG	.	34	27	74	0	.	136	C	116061116	A	C	116061116	2	2	38	1	0	0	0	0	0	0	0	1	355	175	7	5		5	AFAP1L2	10	116061116	Silent	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	11571627	116061116	19473631	87	4639											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127455372	127455372	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MMP21	NM_147191	exon7	c.C1569T	p.G523G	TGCATTGCCTTTG	.	57	42	97	0	.	228	A	127455372	G	A	127455372	2	1	38	1	0	0	0	0	0	0	0	1	9660	1306	46	3		3	MMP21	10	127455372	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	11394256	127455372	8079375	88	4640											
BRSK2	9024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1466647	1466647	+	Missense_Mutation	SNP	C	C	A	rs199880359	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	BRSK2	NM_001256630	exon10	c.C1074A	p.F358L	CTGCTTCCGAGAC	.	55	28	127	2	C|0.999;T|0.001	333	A	1466647	C	A	1466647	3	1	38	1	0	0	0	0	1	0	0	0	1524	854	30	3	974	3	BRSK2	11	1466647	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10		1466647	133539869	89	4641											
TH	7054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	2189846	2189846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TH	NM_199292	exon4	c.C455T	p.P152L	GCTCGCGGCCTCT	.	18	12	33	0	.	90	A	2189846	G	A	2189846	3	1	38	1	0	0	0	0	1	0	0	0	15835	1116	39	1	1175	1	TH	11	2189846	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	723199	2189846	132816670	90	4642											
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6943217	6943217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	OR2D3	NM_001004684	exon1	c.A985T	p.R329W	TCTCATAGGCAGT	.	48	20	54	0	.	68	T	6943217	A	T	6943217	3	4	38	1	0	0	0	0	1	0	0	0	10995	411	15	4	987	4	OR2D3	11	6943217	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	4753371	6943217	128063299	91	4643											
ST5	6764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	8752447	8752447	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ST5	NM_005418	exon6	c.390delC	p.A130fs	GAGGCAGGCAGCG	.	22	12	47	0	.	227	-	8752447	G	-	8752447	7	5	38	1	0	1	0	1	0	0	0	0	15219	987	35	0	3095	0	ST5	11	8752447	Frame_Shift_Del	DEL	G	TCGA-CC-A5UE-01A-11D-A28X-10	1809230	8752447	126254069	92	4644											
USH1C	10083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17548323	17548323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USH1C	NM_153676	exon7	c.G556A	p.D186N	ACTGATCCACATA	.	135	40	170	1	.	91	T	17548323	C	T	17548323	3	4	38	1	0	0	0	0	1	0	0	0	17031	855	30	3	2305	3	USH1C	11	17548323	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	8795876	17548323	117458193	93	4645											
MPPED2	744	broad.mit.edu;bcgsc.ca	37	11	30410485	30410485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MPPED2	NM_001145399	exon7	c.C785A	p.S262Y	GCCTTGGAGATGC	.	49	21	72	1	.	91	T	30410485	G	T	30410485	3	4	38	1	0	0	0	0	1	0	0	0	9742	1174	41	3	52	3	MPPED2	11	30410485	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	12862162	30410485	104596031	94	4646											
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36595488	36595488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RAG1	NM_000448	exon2	c.G634T	p.D212Y	TCCTGTGACATCT	.	74	17	81	0	.	230	T	36595488	G	T	36595488	3	4	38	1	0	0	0	0	1	0	0	0	13003	1290	45	3	636	3	RAG1	11	36595488	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	6185003	36595488	98411028	95	4647											
TMEM132A	54972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60698051	60698051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TMEM132A	NM_178031	exon5	c.G936T	p.K312N	TGCCAAGCTGGAC	.	42	11	80	0	.	227	T	60698051	G	T	60698051	3	4	38	1	0	0	0	0	1	0	0	0	16042	962	34	3	954	3	TMEM132A	11	60698051	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	24102563	60698051	74308465	96	4648											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92577730	92577730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FAT3	NM_001008781	exon18	c.A11197G	p.M3733V	AATATCATGCGCA	.	157	71	234	0	.	73	G	92577730	A	G	92577730	3	3	38	1	0	0	0	0	1	0	0	0	5691	217	8	2	11267	2	FAT3	11	92577730	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	31879679	92577730	42428786	97	4649											
PGR	5241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100922293	100922293	+	Missense_Mutation	SNP	C	C	T	rs149186732	byfrequency	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	PGR,NS,carcinoma,0	PGR	NM_000926	exon5	c.G2219A	p.R740Q	AAGTTTCGAAAAC	.	106	31	132	0	C|1.000;T|0.000	652	T	100922293	C	T	100922293	3	4	38	1	0	0	0	0	1	0	0	0	11805	884	31	1	598	1	PGR	11	100922293	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	8344563	100922293	34084223	98	4650											
DDI1	414301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103908038	103908038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DDI1	NM_001001711	exon1	c.G488A	p.R163H	AGGAACGCAACCC	.	47	11	78	0	.	137	A	103908038	G	A	103908038	3	1	38	1	0	0	0	0	1	0	0	0	4328	1087	38	1	490	1	DDI1	11	103908038	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	2985745	103908038	31098478	99	4651											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118376454	118376454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MLL	NM_001197104	exon27	c.C9847T	p.R3283X	TCTCACCGAACTG	.	65	29	71	0	.	1255	T	118376454	C	T	118376454	4	4	38	1	0	0	0	0	0	1	0	0	9620	644	23	1	9944	1	MLL	11	118376454	Nonsense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	14468416	118376454	16630062	100	4652											
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124765401	124765401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ROBO4	NM_019055	exon6	c.G988T	p.A330S	CTCGAGCCCGGCC	.	43	21	34	0	.	92	A	124765401	C	A	124765401	3	1	38	1	0	0	0	0	1	0	0	0	13516	739	26	3	2087	3	ROBO4	11	124765401	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	6388947	124765401	10241115	101	4653											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40657644	40657644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRRK2	NM_198578	exon14	c.G1597T	p.V533F	AATATGGTTAAAA	.	101	21	140	0	.	533	T	40657644	G	T	40657644	3	4	38	1	0	0	0	0	1	0	0	0	9033	1261	44	3	1651	3	LRRK2	12	40657644	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		40657644	93194251	102	4654											
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49089809	49089809	+	Missense_Mutation	SNP	C	C	A	rs35965578	byfrequency;alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CCNT1	NM_001240	exon7	c.G679T	p.A227S	CAGTGGCGTCAAC	.	94	24	125	0	C|0.500;G|0.500	418	A	49089809	C	A	49089809	3	1	38	1	0	0	0	0	1	0	0	0	2934	768	27	1	1513	1	CCNT1	12	49089809	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	8432165	49089809	84762086	103	4655											
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498513	28498513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PDX1	NM_000209	exon2	c.G527T	p.R176L	CGCGCCGGGTGGA	.	45	38	161	1	.	514	T	28498513	G	T	28498513	3	4	38	1	0	0	0	0	1	0	0	0	11695	1116	39	1	533	1	PDX1	13	28498513	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		28498513	86671365	104	4656											
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	21679444	21679444	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HNRNPC	NM_031314	exon9	c.G859T	p.E287X	CTTTTTCATCATC	.	75	30	129	0	.	90	A	21679444	C	A	21679444	4	1	38	1	0	0	0	0	0	1	0	0	7262	835	29	3	65	3	HNRNPC	14	21679444	Nonsense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10		21679444	85670096	105	4657											
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75016623	75016623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LTBP2	NM_000428	exon8	c.G1732T	p.G578C	CACTGCCACAGCA	.	79	31	154	0	.	92	A	75016623	C	A	75016623	3	1	38	1	0	0	0	0	1	0	0	0	9074	594	21	3	3849	3	LTBP2	14	75016623	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	53337179	75016623	32332917	106	4658											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75515470	75515470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MLH3	NM_014381	exon2	c.C889T	p.R297W	TAGACCGGTGCCG	.	58	16	109	0	.	228	A	75515470	G	A	75515470	3	1	38	1	0	0	0	0	1	0	0	0	9618	1115	39	1	3520	1	MLH3	14	75515470	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	498847	75515470	31834070	107	4659											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28518063	28518063	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	HERC2	NM_004667	exon8	c.G888T	p.L296L	CACAGCCAGCTCC	.	24	11	40	0	.	234	A	28518063	C	A	28518063	2	1	38	1	0	0	0	0	0	0	0	1	7058	581	21	3		3	HERC2	15	28518063	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10		28518063	74013329	108	4660											
MEIS2	4212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	37184488	37184488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MEIS2	NM_170675	exon12	c.G1320T	p.M440I	TCCGTGCATCATC	.	79	33	102	1	.	92	A	37184488	C	A	37184488	3	1	38	1	0	0	0	0	1	0	0	0	9468	710	25	3	117	3	MEIS2	15	37184488	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	8666425	37184488	65346904	109	4661											
RTF1	23168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41763423	41763423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RTF1	NM_015138	exon8	c.A1079G	p.N360S	AATTGAATCGGGT	.	72	16	110	0	.	92	G	41763423	A	G	41763423	3	3	38	1	0	0	0	0	1	0	0	0	13721	101	4	2	1109	2	RTF1	15	41763423	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	4578935	41763423	60767969	110	4662											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48829964	48829964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FBN1	NM_000138	exon7	c.A580T	p.M194L	GGCACATCTGGTT	.	72	20	71	0	.	92	A	48829964	T	A	48829964	3	1	38	1	0	0	0	0	1	0	0	0	5702	1435	50	4	8275	4	FBN1	15	48829964	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	7066541	48829964	53701428	111	4663											
LYSMD4	145748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100269392	100269392	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LYSMD4	NM_152449	exon6	c.T830A	p.V277D	ACTGCAACTGCTA	.	138	56	181	0	.	90	T	100269392	A	T	100269392	3	4	38	1	0	0	0	0	1	0	0	0	9127	43	2	4	67	4	LYSMD4	15	100269392	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	51439428	100269392	2262000	112	4664											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	348096	348097	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	AXIN1	NM_003502	exon6	c.1410_1411insT	p.I470fs	GTCCAGGATGCTC	.	21	14	67	0	.	684	A	348097	-	A	348096	7	5	38	1	0	1	1	0	0	0	0	0	1236	1164	41	0	1202	0	AXIN1	16	348096	Frame_Shift_Ins	INS	-	TCGA-CC-A5UE-01A-11D-A28X-10		348096	90006657	113	4665											
FBXO31	79791	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87364936	87364936	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	FBXO31	NM_024735	exon9	c.C1578T	p.A526A	ATCGAAGGCCTGT	.	62	48	158	2	.	226	A	87364936	G	A	87364936	2	1	38	1	0	0	0	0	0	0	0	1	5741	987	35	3		3	FBXO31	16	87364936	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	87016840	87364936	2989817	114	4666											
JPH3	57338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87677929	87677929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	JPH3	NM_020655	exon2	c.T448C	p.Y150H	GTCCCGTATGGCA	.	44	33	174	2	.	92	C	87677929	T	C	87677929	3	2	38	1	0	0	0	0	1	0	0	0	7962	1638	57	2	454	2	JPH3	16	87677929	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	312993	87677929	2676824	115	4667											
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	89	69	249	2	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	38	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10		7577534	73617676	116	4668											
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8390877	8390877	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MYH10	NM_001256012	exon36	c.G4920A	p.R1640R	CTGTTTCCTCTCA	.	41	29	58	0	.	92	T	8390877	C	T	8390877	2	4	38	1	0	0	0	0	0	0	0	1	10030	854	30	3		3	MYH10	17	8390877	Silent	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	813343	8390877	72804333	117	4669											
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30616004	30616004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	RHBDL3	NM_138328	exon4	c.C488T	p.P163L	CCCCACCCTGGTT	.	194	83	359	0	.	91	T	30616004	C	T	30616004	3	4	38	1	0	0	0	0	1	0	0	0	13323	623	22	3	502	3	RHBDL3	17	30616004	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	22225127	30616004	50579206	118	4670											
NKIRAS2	28511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40174597	40174597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NKIRAS2	NM_001144927	exon3	c.A275G	p.E92G	GCAGAGAGTCTTT	.	45	23	91	0	.	660	G	40174597	A	G	40174597	3	3	38	1	0	0	0	0	1	0	0	0	10445	304	11	2	281	2	NKIRAS2	17	40174597	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	9558593	40174597	41020613	119	4671											
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	43861914	43861914	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CRHR1	NM_001145148	exon1	c.G4T	p.G2X	AGGATGGGAGGGC	.	31	15	74	0	.	522	T	43861914	G	T	43861914	4	4	38	1	0	0	0	0	0	1	0	0	3871	1233	43	3	6	3	CRHR1	17	43861914	Nonsense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	3687317	43861914	37333296	120	4672											
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	48149396	48149396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ITGA3	NM_005501	exon7	c.G1006T	p.E336X	AGGAAAGAGGAAG	.	155	68	213	0	.	229	T	48149396	G	T	48149396	4	4	38	1	0	0	0	0	0	1	0	0	7877	943	33	3	1032	3	ITGA3	17	48149396	Nonsense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	4287482	48149396	33045814	121	4673											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60024306	60024306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	MED13	NM_005121	exon29	c.G6364C	p.D2122H	TTGAGTCAAGTGG	.	168	27	125	0	.	136	G	60024306	C	G	60024306	3	3	38	1	0	0	0	0	1	0	0	0	9430	826	29	4	168	4	MED13	17	60024306	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	11874910	60024306	21170904	122	4674											
METTL2A	339175	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60518074	60518074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	METTL2A	NM_181725	exon6	c.A766G	p.I256V	CTTGATATTATCA	.	370	32	384	0	.	248	G	60518074	A	G	60518074	3	3	38	1	0	0	0	0	1	0	0	0	9499	449	16	2	788	2	METTL2A	17	60518074	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	493768	60518074	20677136	123	4675											
USH1G	124590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72916210	72916210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USH1G	NM_173477	exon2	c.G721T	p.A241S	AGCGGGCGCTCTT	.	39	28	32	0	.	92	A	72916210	C	A	72916210	3	1	38	1	0	0	0	0	1	0	0	0	17032	768	27	1	672	1	USH1G	17	72916210	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	12398136	72916210	8279000	124	4676											
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79988573	79988573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	LRRC45	NM_144999	exon17	c.G1905C	p.E635D	GGCGGAGATCGCC	.	74	49	72	0	.	91	C	79988573	G	C	79988573	3	2	38	1	0	0	0	0	1	0	0	0	9002	933	33	4	1971	4	LRRC45	17	79988573	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	7072363	79988573	1206637	125	4677											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50923774	50923774	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DCC	NM_005215	exon18	c.A2785T	p.S929C	AGGTCCAGTACTT	.	73	20	87	0	.	225	T	50923774	A	T	50923774	3	4	38	1	0	0	0	0	1	0	0	0	4282	188	7	4	2855	4	DCC	18	50923774	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10		50923774	27153474	126	4678											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11096863	11096863	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SMARCA4	NM_003072	exon4	c.356-2A>T	.	CTCTGCAGGTTAC	.	34	25	87	0	.	1523	T	11096863	A	T	11096863	5	4	38	1	0	0	0	0	0	0	1	0	14770	202	7	4	364	4	SMARCA4	19	11096863	Splice_Site	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10		11096863	48032120	127	4679											
PLD3	23646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40872522	40872522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PLD3	NM_012268	exon4	c.G33T	p.K11N	GCTGAAGGTGCCT	.	44	25	69	0	.	228	T	40872522	G	T	40872522	3	4	38	1	0	0	0	0	1	0	0	0	12047	991	35	3	39	3	PLD3	19	40872522	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	29775659	40872522	18256461	128	4680											
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44571032	44571032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZNF223	NM_013361	exon5	c.A1051G	p.K351E	TGTGGGAAGAGCT	.	96	36	124	0	.	91	G	44571032	A	G	44571032	3	3	38	1	0	0	0	0	1	0	0	0	17774	247	9	2	1065	2	ZNF223	19	44571032	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	3698510	44571032	14557951	129	4681											
PPP1R13L	10848	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45898840	45898840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PPP1R13L	NM_001142502	exon7	c.C1208G	p.P403R	TTAGGCGGGGGTG	.	10	5	18	0	.	91	C	45898840	G	C	45898840	3	2	38	1	0	0	0	0	1	0	0	0	12358	1116	39	4	1306	4	PPP1R13L	19	45898840	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	1327808	45898840	13230143	130	4682											
VASP	7408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46021343	46021343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	VASP	NM_003370	exon3	c.G334T	p.A112S	CTAGAGGCGTTGG	.	68	26	148	0	.	514	T	46021343	G	T	46021343	3	4	38	1	0	0	0	0	1	0	0	0	17125	1203	42	3	344	3	VASP	19	46021343	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	122503	46021343	13107640	131	4683											
PPP2R1A	5518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52714742	52714742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PPP2R1A	NM_014225	exon4	c.G500A	p.R167Q	AACTTCGACAGTG	.	43	16	36	0	.	1666	A	52714742	G	A	52714742	3	1	38	1	0	0	0	0	1	0	0	0	12382	1058	37	1	514	1	PPP2R1A	19	52714742	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	6693399	52714742	6414241	132	4684											
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	52941617	52941617	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZNF534	NM_001143939	exon4	c.G943T	p.E315X	TGTAGTGAATGTG	.	87	28	122	0	.	68	T	52941617	G	T	52941617	4	4	38	1	0	0	0	0	0	1	0	0	17970	1291	45	3	957	3	ZNF534	19	52941617	Nonsense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	226875	52941617	6187366	133	4685											
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44403077	44403077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	WFDC3	NM_080614	exon7	c.C686T	p.P229L	GGCACCGGGATCT	.	53	12	70	0	.	90	A	44403077	G	A	44403077	3	1	38	1	0	0	0	0	1	0	0	0	17350	1116	39	1	13	1	WFDC3	20	44403077	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		44403077	18622443	134	4686											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47342858	47342858	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	PREX1	NM_020820	exon5	c.A590T	p.Q197L	ATCCTCTGGATCG	.	128	57	187	0	.	231	A	47342858	T	A	47342858	3	1	38	1	0	0	0	0	1	0	0	0	12476	1580	55	4	4533	4	PREX1	20	47342858	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10	2939781	47342858	15682662	135	4687											
TSHZ2	128553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872915	51872915	+	Missense_Mutation	SNP	G	G	T	rs201353411	alternate_allele	TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TSHZ2	NM_173485	exon2	c.G2918T	p.R973L	TCTCCCGGGTATC	.	126	43	130	1	.	232	T	51872915	G	T	51872915	3	4	38	1	0	0	0	0	1	0	0	0	16621	1116	39	1	2924	1	TSHZ2	20	51872915	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	4530057	51872915	11152605	136	4688											
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57288476	57288476	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	.	NM_024663	exon9	c.G1002A	p.K334K	CCCCAGGACGGTG	.	125	53	159	0	.	.	A	57288476	G	A	57288476	2	1	38	1	0	0	0	0	0	0	0	1	10574	1188	41	3		3	NPEPL1	20	57288476	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	5415561	57288476	5737044	137	4689											
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	28217002	28217002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ADAMTS1	NM_006988	exon1	c.C272A	p.P91H	CTGTCGGGCCGCA	.	56	15	82	0	.	272	T	28217002	G	T	28217002	3	4	38	1	0	0	0	0	1	0	0	0	255	1232	43	3	2667	3	ADAMTS1	21	28217002	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		28217002	19912893	138	4690											
SYNJ1	8867	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	21	34100328	34100328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	SYNJ1	NM_203446	exon1	c.G24T	p.W8C	TCCGCTCCAGCAG	.	11	10	12	0	.	232	A	34100328	C	A	34100328	3	1	38	1	0	0	0	0	1	0	0	0	15449	856	30	3	4976	3	SYNJ1	21	34100328	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	5883326	34100328	14029567	139	4691											
DIP2A	23181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47952072	47952072	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	DIP2A	NM_206891	exon10	c.G1227T	p.V409V	CCCTGTGATGTTC	.	124	76	153	0	.	24	T	47952072	G	T	47952072	2	4	38	1	0	0	0	0	0	0	0	1	4527	1277	45	3		3	DIP2A	21	47952072	Silent	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	13851744	47952072	177823	140	4692											
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	29886676	29886676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	NEFH	NM_021076	exon4	c.C3047A	p.A1016D	ACAAGGCCGCCAA	.	65	39	80	0	.	90	A	29886676	C	A	29886676	3	1	38	1	0	0	0	0	1	0	0	0	10314	739	26	3	3061	3	NEFH	22	29886676	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10		29886676	21417890	141	4693											
CDC42EP1	11135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37964608	37964608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	CDC42EP1	NM_152243	exon3	c.G957T	p.R319S	CGGCAGGCACTGG	.	71	27	132	0	.	90	T	37964608	G	T	37964608	3	4	38	1	0	0	0	0	1	0	0	0	3075	1194	42	3	963	3	CDC42EP1	22	37964608	Missense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10	8077932	37964608	13339958	142	4694											
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38823369	38823377	+	In_Frame_Del	DEL	ACACCAGGA	ACACCAGGA	-	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	ACACCAGGA	ACACCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	KCNJ4	NM_004981	exon2	c.761_769del	p.254_257del	TGGGCGACACCAG	.	147	28	183	0	.	90	-	38823377	ACACCAGGA	-	38823369	7	5	38	1	0	1	0	1	0	0	0	0	8053	275	10	0	572	0	KCNJ4	22	38823369	In_Frame_Del	DEL	ACACCAGGA	TCGA-CC-A5UE-01A-11D-A28X-10	858761	38823369	12481197	143	4695											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70674056	70674056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	TAF1	NM_004606	exon33	c.T4850C	p.I1617T	AGGAGATTGTGAA	.	78	66	104	0	.	900	C	70674056	T	C	70674056	3	2	38	1	0	0	0	0	1	0	0	0	15510	1493	52	2	4980	2	TAF1	23	70674056	Missense_Mutation	SNP	T	TCGA-CC-A5UE-01A-11D-A28X-10		70674056	84596504	144	4696											
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	111698140	111698140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	ZCCHC16	NM_001004308	exon3	c.A184T	p.T62S	CATCTCACCCAGT	.	278	125	134	1	.	91	T	111698140	A	T	111698140	3	4	38	1	0	0	0	0	1	0	0	0	17581	159	6	4	186	4	ZCCHC16	23	111698140	Missense_Mutation	SNP	A	TCGA-CC-A5UE-01A-11D-A28X-10	41024084	111698140	43572420	145	4697											
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132159790	132159790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USP26	NM_031907	exon1	c.G2459T	p.G820V	TGATCTCCCTTAT	.	52	11	16	0	.	661	A	132159790	C	A	132159790	3	1	38	1	0	0	0	0	1	0	0	0	17054	855	30	3	285	3	USP26	23	132159790	Missense_Mutation	SNP	C	TCGA-CC-A5UE-01A-11D-A28X-10	20461650	132159790	23110770	146	4698											
USP9Y	8287	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	Y	14951877	14951877	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UE-01A-11D-A28X-10	TCGA-CC-A5UE-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	02ae91b2-04c4-42aa-a17e-acc1cd567538	94ab9c19-5161-421e-8816-59e46a6af947	.	USP9Y	NM_004654	exon36	c.G5425T	p.E1809X	GAAAGAGAATGTG	.	35	28	82	0	.	136	T	14951877	G	T	14951877	4	4	38	1	0	0	0	0	0	1	0	0	17088	943	33	3	5559	3	USP9Y	24	14951877	Nonsense_Mutation	SNP	G	TCGA-CC-A5UE-01A-11D-A28X-10		14951877	44421689	147	4699											
EFHD2	79180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15753664	15753664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EFHD2	NM_024329	exon3	c.A475G	p.K159E	TTCCGCAAGGCGG	.	67	30	131	0	.	90	G	15753664	A	G	15753664	3	3	39	1	0	0	0	0	1	0	0	0	4949	131	5	2	485	2	EFHD2	1	15753664	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10		15753664	233496957	1	4700											
ZMYM1	79830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35578710	35578710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZMYM1	NM_024772	exon10	c.A1279G	p.N427D	AAAGACAATATGA	.	144	31	238	0	.	90	G	35578710	A	G	35578710	3	3	39	1	0	0	0	0	1	0	0	0	17696	130	5	2	1313	2	ZMYM1	1	35578710	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	19825046	35578710	213671911	2	4701											
EBNA1BP2	10969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43637963	43637963	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EBNA1BP2	NM_001159936	exon1	c.T130C	p.L44L	TGCTCAACTTTTG	.	49	13	93	0	.	90	G	43637963	A	G	43637963	2	3	39	1	0	0	0	0	0	0	0	1	4885	40	2	2		2	EBNA1BP2	1	43637963	Silent	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	8059253	43637963	205612658	3	4702											
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67833704	67833704	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IL12RB2	NM_001559	exon10	c.T1455C	p.I485I	TCTGATTTCAGGT	.	47	6	53	0	.	92	C	67833704	T	C	67833704	2	2	39	1	0	0	0	0	0	0	0	1	7627	1829	64	2		2	IL12RB2	1	67833704	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	24195741	67833704	181416917	4	4703											
CLCA1	1179	broad.mit.edu;bcgsc.ca	37	1	86939514	86939514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CLCA1	NM_001285	exon3	c.C406A	p.P136T	CTCACTCCTGATT	.	131	12	187	0	.	91	A	86939514	C	A	86939514	3	1	39	1	0	0	0	0	1	0	0	0	3457	855	30	3	416	3	CLCA1	1	86939514	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	19105810	86939514	162311107	5	4704											
ABCA4	24	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94496008	94496008	+	Missense_Mutation	SNP	C	C	T	rs61750142		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ABCA4	NM_000350	exon29	c.G4328A	p.R1443H	AGGCAGCGGTTGC	.	36	5	66	1	.	162	T	94496008	C	T	94496008	3	4	39	1	0	0	0	0	1	0	0	0	34	768	27	1	2581	1	ABCA4	1	94496008	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	7556494	94496008	154754613	6	4705											
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117944848	117944848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAN1A2	NM_006699	exon2	c.C343T	p.H115Y	GCTGATCATGAGA	.	122	27	186	0	.	90	T	117944848	C	T	117944848	3	4	39	1	0	0	0	0	1	0	0	0	9211	826	29	3	349	3	MAN1A2	1	117944848	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	23448840	117944848	131305773	7	4706											
SLC27A3	11000	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153752329	153752329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC27A3	NM_024330	exon10	c.A2044G	p.K682E	ACCTTCAAACAGC	.	70	38	105	2	.	91	G	153752329	A	G	153752329	3	3	39	1	0	0	0	0	1	0	0	0	14527	131	5	2	2082	2	SLC27A3	1	153752329	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	35807481	153752329	95498292	8	4707											
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167666394	167666394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RCSD1	NM_052862	exon6	c.A533C	p.Q178P	GGTCACAGTCAGA	.	167	12	167	0	.	517	C	167666394	A	C	167666394	3	2	39	1	0	0	0	0	1	0	0	0	13185	188	7	5	555	5	RCSD1	1	167666394	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	13914065	167666394	81584227	9	4708											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216040477	216040477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	USH2A	NM_206933	exon44	c.A8717G	p.N2906S	ACACTGTTGTGTA	.	134	57	129	0	.	115	C	216040477	T	C	216040477	3	2	39	1	0	0	0	0	1	0	0	0	17033	1725	60	2	7007	2	USH2A	1	216040477	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	48374083	216040477	33210144	10	4709											
ZNF669	79862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247264138	247264138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF669	NM_024804	exon4	c.933delT	p.C311fs	TTTCCCACATTCC	.	92	22	85	0	.	90	-	247264138	A	-	247264138	7	5	39	1	0	1	0	1	0	0	0	0	18073	157	6	0	465	0	ZNF669	1	247264138	Frame_Shift_Del	DEL	A	TCGA-CC-A7IF-01A-11D-A33K-10	31223661	247264138	1986483	11	4710											
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248024000	248024000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM58	NM_015431	exon2	c.A502G	p.T168A	AAAAAGACTGTCA	.	140	67	163	0	.	96	G	248024000	A	G	248024000	3	3	39	1	0	0	0	0	1	0	0	0	16528	275	10	2	508	2	TRIM58	1	248024000	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	759862	248024000	1226621	12	4711											
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248844793	248844793	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR14I1	NM_001004734	exon1	c.G813T	p.V271V	AGCAATCACTAAA	.	65	14	64	0	.	46	A	248844793	C	A	248844793	2	1	39	1	0	0	0	0	0	0	0	1	10947	813	29	3		3	OR14I1	1	248844793	Silent	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	820793	248844793	405828	13	4712											
MSGN1	343930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17998144	17998144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MSGN1	NM_001105569	exon1	c.G359A	p.R120K	AAGTCAGGATGTC	.	148	51	217	2	.	69	A	17998144	G	A	17998144	3	1	39	1	0	0	0	0	1	0	0	0	9869	1000	35	3	361	3	MSGN1	2	17998144	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		17998144	225201229	14	4713											
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29259514	29259514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM179A	NM_199280	exon18	c.C2526A	p.H842Q	CTTACACCCCATG	.	90	36	98	0	.	26	A	29259514	C	A	29259514	3	1	39	1	0	0	0	0	1	0	0	0	5505	506	18	3	2592	3	FAM179A	2	29259514	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	11261370	29259514	213939859	15	4714											
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96799781	96799781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ASTL	NM_001002036	exon4	c.T260G	p.L87R	GCTGACAGCAGTC	.	36	13	67	0	.	90	C	96799781	A	C	96799781	3	2	39	1	0	0	0	0	1	0	0	0	1063	188	7	5	1058	5	ASTL	2	96799781	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	67540267	96799781	146399592	16	4715											
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423271	107423271	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ST6GAL2	NM_032528	exon6	c.C1453T	p.L485L	AGAGTAGTGGGTG	.	75	35	89	0	.	191	A	107423271	G	A	107423271	2	1	39	1	0	0	0	0	0	0	0	1	15221	1020	36	3		3	ST6GAL2	2	107423271	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	10623490	107423271	135776102	17	4716											
CCDC93	54520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118703151	118703151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCDC93	NM_019044	exon17	c.C1304T	p.S435F	CCACTGGAGAGGG	.	27	9	36	0	.	154	A	118703151	G	A	118703151	3	1	39	1	0	0	0	0	1	0	0	0	2872	1174	41	3	623	3	CCDC93	2	118703151	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	11279880	118703151	124496222	18	4717											
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210588377	210588377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP2	NM_001039538	exon12	c.A1235T	p.K412M	GTTCCAAGGATAA	.	167	74	234	0	.	591	T	210588377	A	T	210588377	3	4	39	1	0	0	0	0	1	0	0	0	9235	72	3	4	5345	4	MAP2	2	210588377	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	91885226	210588377	32610996	19	4718											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225688292	225688292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DOCK10	NM_014689	exon28	c.C3109A	p.H1037N	TCACATGGTCGGA	.	89	44	91	0	.	92	T	225688292	G	T	225688292	3	4	39	1	0	0	0	0	1	0	0	0	4685	1348	47	3	3567	3	DOCK10	2	225688292	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	15099915	225688292	17511081	20	4719											
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154146446	154146446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR149	NM_001038705	exon1	c.T959A	p.V320D	AGGACGACTTTTG	.	114	47	189	0	.	96	T	154146446	A	T	154146446	3	4	39	1	0	0	0	0	1	0	0	0	6654	275	10	4	1252	4	GPR149	3	154146446	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10		154146446	43875984	21	4720											
MFSD1	64747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158525238	158525238	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MFSD1	NM_022736	exon5	c.A573C	p.G191G	ATTTGGAAGATTT	.	71	29	116	0	.	90	C	158525238	A	C	158525238	2	2	39	1	0	0	0	0	0	0	0	1	9527	233	9	5		5	MFSD1	3	158525238	Silent	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	4378792	158525238	39497192	22	4721											
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184646286	184646286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS8	NM_001009921	exon31	c.G2679C	p.E893D	TGAAGAGAGTCGA	.	96	44	116	0	.	91	C	184646286	G	C	184646286	3	2	39	1	0	0	0	0	1	0	0	0	17215	933	33	4	2797	4	VPS8	3	184646286	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	26121048	184646286	13376144	23	4722											
LGI2	55203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25005095	25005095	+	Missense_Mutation	SNP	A	A	G	rs150163590		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	LGI2	NM_018176	exon8	c.T1616C	p.I539T	ACAATTATATGTT	.	105	43	147	0	A|1.000;G|0.000	90	G	25005095	A	G	25005095	3	3	39	1	0	0	0	0	1	0	0	0	8752	449	16	2	25	2	LGI2	4	25005095	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10		25005095	166149181	24	4723											
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895442	42895442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GRXCR1	NM_001080476	exon1	c.T159A	p.D53E	GATAGATGGACTA	.	89	47	119	0	.	23	A	42895442	T	A	42895442	3	1	39	1	0	0	0	0	1	0	0	0	6812	1461	51	4	161	4	GRXCR1	4	42895442	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	17890347	42895442	148258834	25	4724											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55964415	55964415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDR	NM_002253	exon17	c.G2398C	p.G800R	AGTAGCCTGTCTT	.	83	21	139	0	.	2298	G	55964415	C	G	55964415	3	3	39	1	0	0	0	0	1	0	0	0	8139	681	24	4	1728	4	KDR	4	55964415	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	13068973	55964415	135189861	26	4725											
UGT2A3	79799	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69816874	69816874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGT2A3	NM_024743	exon1	c.G605T	p.R202I	GTCATTCTGTCTG	.	137	60	171	2	.	92	A	69816874	C	A	69816874	3	1	39	1	0	0	0	0	1	0	0	0	16952	913	32	3	1002	3	UGT2A3	4	69816874	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	13852459	69816874	121337402	27	4726											
RNF175	285533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154636682	154636682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RNF175	NM_173662	exon7	c.G763A	p.V255I	GATACACATGATT	.	49	17	72	1	.	47	T	154636682	C	T	154636682	3	4	39	1	0	0	0	0	1	0	0	0	13463	492	17	3	235	3	RNF175	4	154636682	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	84819808	154636682	36517594	28	4727											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155412382	155412382	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DCHS2	NM_001142552	exon1	c.G126A	p.R42R	CTGCGTCCTGGCG	.	63	14	86	0	.	94	T	155412382	C	T	155412382	2	4	39	1	0	0	0	0	0	0	0	1	4288	854	30	3		3	DCHS2	4	155412382	Silent	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	775700	155412382	35741894	29	4728											
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	160243510	160243510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RAPGEF2	NM_014247	exon4	c.G382T	p.E128X	CTCTTGGAATTTA	.	71	53	152	0	.	637	T	160243510	G	T	160243510	4	4	39	1	0	0	0	0	0	1	0	0	13044	1175	41	3	396	3	RAPGEF2	4	160243510	Nonsense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	4831128	160243510	30910766	30	4729											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175898867	175898867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.C2191A	p.Q731K	CCTCCCCAGAGTC	.	58	50	143	0	.	729	A	175898867	C	A	175898867	3	1	39	1	0	0	0	0	1	0	0	0	247	595	21	3	2193	3	ADAM29	4	175898867	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	15655357	175898867	15255409	31	4730	29	2									
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175898869	175898869	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.G2193A	p.Q731Q	TCCCCAGAGTCAA	.	58	50	142	1	.	729	A	175898869	G	A	175898869	2	1	39	1	0	0	0	0	0	0	0	1	247	933	33	3		3	ADAM29	4	175898869	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	2	175898869	15255407	32	4731	29	2									
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5462512	5462512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KIAA0947	NM_015325	exon13	c.G3065C	p.G1022A	GCTGTGGAGACAC	.	67	15	102	0	.	48	C	5462512	G	C	5462512	3	2	39	1	0	0	0	0	1	0	0	0	8202	1174	41	4	3115	4	KIAA0947	5	5462512	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		5462512	175452748	33	4732											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7709399	7709399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADCY2	NM_020546	exon10	c.C1477T	p.R493C	TCGGTCCGCATGA	.	85	29	94	0	.	97	T	7709399	C	T	7709399	3	4	39	1	0	0	0	0	1	0	0	0	294	652	23	1	1515	1	ADCY2	5	7709399	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	2246887	7709399	173205861	34	4733											
CCT5	22948	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10258415	10258415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCT5	NM_012073	exon5	c.A723C	p.K241N	GCCAAAAGTGAGC	.	121	20	147	1	.	92	C	10258415	A	C	10258415	3	2	39	1	0	0	0	0	1	0	0	0	2956	86	3	5	741	5	CCT5	5	10258415	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	2549016	10258415	170656845	35	4734											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13917343	13917343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH5	NM_001369	exon8	c.G998A	p.R333Q	GTGATTCGAATAT	.	63	26	64	0	.	182	T	13917343	C	T	13917343	3	4	39	1	0	0	0	0	1	0	0	0	4604	884	31	1	13164	1	DNAH5	5	13917343	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	3658928	13917343	166997917	36	4735											
PJA2	9867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	108714271	108714271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PJA2	NM_014819	exon4	c.A917G	p.H306R	CTTCCATGGTTCT	.	86	18	90	0	.	92	C	108714271	T	C	108714271	3	2	39	1	0	0	0	0	1	0	0	0	11962	1464	51	2	1237	2	PJA2	5	108714271	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	94796928	108714271	72200989	37	4736											
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433011	140433011	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDHB1	NM_013340	exon1	c.T1956A	p.A652A	ACCAGCTCTTTCC	.	81	33	108	0	.	90	A	140433011	T	A	140433011	2	1	39	1	0	0	0	0	0	0	0	1	11534	1538	54	4		4	PCDHB1	5	140433011	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	31718740	140433011	40482249	38	4737											
IRF4	3662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	393203	393203	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IRF4	NM_001195286	exon2	c.G51A	p.V17V	CGCGGTGAGCTGC	.	123	51	134	0	.	659	A	393203	G	A	393203	2	1	39	1	0	0	0	0	0	0	0	1	7832	1277	45	3		3	IRF4	6	393203	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		393203	170721864	39	4738											
TRIM26	7726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30154170	30154170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM26	NM_001242783	exon9	c.T1103A	p.V368D	CAGTAGACCTTGC	.	65	25	61	1	.	206	T	30154170	A	T	30154170	3	4	39	1	0	0	0	0	1	0	0	0	16497	275	10	4	520	4	TRIM26	6	30154170	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	29760967	30154170	140960897	40	4739											
AGER	177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32149151	32149151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AGER	NM_172197	exon9	c.G940A	p.A314T	TTGCCGCCTTTGC	.	57	21	55	0	.	226	T	32149151	C	T	32149151	3	4	39	1	0	0	0	0	1	0	0	0	379	739	26	3	127	3	AGER	6	32149151	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	1994981	32149151	138965916	41	4740											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38858481	38858481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH8	NM_001206927	exon58	c.T8527C	p.C2843R	CAAATATGTGAGA	.	62	30	87	0	.	615	C	38858481	T	C	38858481	3	2	39	1	0	0	0	0	1	0	0	0	4607	1464	51	2	8090	2	DNAH8	6	38858481	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	6709330	38858481	132256586	42	4741											
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136704840	136704840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP7	NM_001198609	exon6	c.A672T	p.S224S	TGCAGATGAAGAG	.	46	35	84	0	.	90	A	136704840	T	A	136704840	2	1	39	1	0	0	0	0	0	0	0	1	9266	1451	51	4		4	MAP7	6	136704840	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	97846359	136704840	34410227	43	4742											
NMBR	4829	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	142409548	142409548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NMBR	NM_002511	exon1	c.C248A	p.S83Y	AGGTTAGAGATGA	.	36	29	74	2	.	946	T	142409548	G	T	142409548	3	4	39	1	0	0	0	0	1	0	0	0	10487	942	33	3	936	3	NMBR	6	142409548	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	5704708	142409548	28705519	44	4743											
FBXL18	80028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5541166	5541166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FBXL18	NM_024963	exon3	c.A734T	p.E245V	ACCACCTCCTGGT	.	70	33	87	0	.	651	A	5541166	T	A	5541166	3	1	39	1	0	0	0	0	1	0	0	0	5714	1551	54	4	1434	4	FBXL18	7	5541166	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10		5541166	153597497	45	4744											
ZNF680	340252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	63982871	63982872	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF680	NM_178558	exon4	c.260_261del	p.87_87del	ATGAGAATATATA	.	46	14	55	0	.	91	-	63982872	AT	-	63982871	7	5	39	1	0	1	0	1	0	0	0	0	18084	108	4	0	1335	0	ZNF680	7	63982871	Frame_Shift_Del	DEL	AT	TCGA-CC-A7IF-01A-11D-A33K-10	58441705	63982871	95155792	46	4745											
CACNA2D1	781	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	81964563	81964563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNA2D1	NM_000722	exon3	c.A182T	p.Y61F	TTCTCATAAATCT	.	69	29	84	2	.	96	A	81964563	T	A	81964563	3	1	39	1	0	0	0	0	1	0	0	0	2548	1406	49	4	3241	4	CACNA2D1	7	81964563	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	17981692	81964563	77174100	47	4746											
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98552830	98552830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRRAP	NM_001244580	exon40	c.A5819T	p.Q1940L	GGCACCAGATGCT	.	69	35	83	0	.	923	T	98552830	A	T	98552830	3	4	39	1	0	0	0	0	1	0	0	0	16598	188	7	4	5915	4	TRRAP	7	98552830	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	16588267	98552830	60585833	48	4747											
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99270218	99270218	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CYP3A5	NM_001190484	exon4	c.C303A	p.V101V	TGTGAAGACAGAA	.	131	48	149	0	.	90	T	99270218	G	T	99270218	2	4	39	1	0	0	0	0	0	0	0	1	4180	929	33	3		3	CYP3A5	7	99270218	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	717388	99270218	59868445	49	4748											
CALD1	800	broad.mit.edu;bcgsc.ca	37	7	134642970	134642970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALD1	NM_033138	exon11	c.1990delA	p.K664fs	GGTGTCAAATCGA	.	70	8	103	0	.	226	-	134642970	A	-	134642970	7	5	39	1	0	1	0	1	0	0	0	0	2581	131	5	0	2081	0	CALD1	7	134642970	Frame_Shift_Del	DEL	A	TCGA-CC-A7IF-01A-11D-A33K-10	35372752	134642970	24495693	50	4749											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152414	149152414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF777	NM_015694	exon2	c.C700A	p.L234M	TCTCCAGATGGTT	.	66	26	73	0	.	136	T	149152414	G	T	149152414	3	4	39	1	0	0	0	0	1	0	0	0	18147	933	33	3	1815	3	ZNF777	7	149152414	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	14509444	149152414	9986249	51	4750											
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154862937	154862937	+	Missense_Mutation	SNP	G	G	T	rs141719500	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HTR5A	NM_024012	exon1	c.G328T	p.G110C	CAGCTAGGTCGGA	.	14	6	26	0	G|1.000;C|0.000	155	T	154862937	G	T	154862937	3	4	39	1	0	0	0	0	1	0	0	0	7450	1000	35	3	330	3	HTR5A	7	154862937	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	5710523	154862937	4275726	52	4751											
PXDNL	137902	broad.mit.edu;bcgsc.ca	37	8	52233381	52233381	+	Missense_Mutation	SNP	C	C	G	rs201816215		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PXDNL	NM_144651	exon22	c.G4223C	p.R1408P	ATCCAGCGCTCCT	.	51	7	76	0	C|0.998;G|0.002	70	G	52233381	C	G	52233381	3	3	39	1	0	0	0	0	1	0	0	0	12848	768	27	4	176	4	PXDNL	8	52233381	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10		52233381	94130641	53	4752											
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57892756	57892756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IMPAD1	NM_017813	exon2	c.A388G	p.I130V	TATTAATCTGCAT	.	66	38	96	0	.	91	C	57892756	T	C	57892756	3	2	39	1	0	0	0	0	1	0	0	0	7725	1449	50	2	707	2	IMPAD1	8	57892756	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	5659375	57892756	88471266	54	4753											
TMEM74	157753	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796877	109796877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TMEM74	NM_153015	exon2	c.G451T	p.A151S	TGGCAGCCTCTTG	.	240	114	143	0	.	228	A	109796877	C	A	109796877	3	1	39	1	0	0	0	0	1	0	0	0	16199	739	26	3	470	3	TMEM74	8	109796877	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	51904121	109796877	36567145	55	4754											
TRHR	7201	broad.mit.edu;mdanderson.org	37	8	110099964	110099964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRHR	NM_003301	exon1	c.T223A	p.L75M	ATGGTCTTGGTGG	.	131	10	79	1	.	620	A	110099964	T	A	110099964	3	1	39	1	0	0	0	0	1	0	0	0	16477	1606	56	4	225	4	TRHR	8	110099964	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	303087	110099964	36264058	56	4755											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113418769	113418769	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSMD3	NM_198123	exon35	c.C5793A	p.S1931S	AGGTAAGGAATCA	.	222	85	170	0	.	1132	T	113418769	G	T	113418769	2	4	39	1	0	0	0	0	0	0	0	1	3946	987	35	3		3	CSMD3	8	113418769	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	3318805	113418769	32945253	57	4756											
MRPL13	28998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	121444294	121444294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MRPL13	NM_014078	exon3	c.A221G	p.Q74R	ACTTTTTGTTCCC	.	207	21	138	0	.	226	C	121444294	T	C	121444294	3	2	39	1	0	0	0	0	1	0	0	0	9778	1812	63	2	335	2	MRPL13	8	121444294	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	8025525	121444294	24919728	58	4757											
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6986628	6986628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDM4C	NM_001146696	exon11	c.G1705C	p.V569L	CCAGCGGTCCCCA	.	61	11	100	0	.	228	C	6986628	G	C	6986628	3	2	39	1	0	0	0	0	1	0	0	0	8130	1261	44	4	1747	4	KDM4C	9	6986628	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		6986628	134226803	59	4758											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14816776	14816776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FREM1	NM_144966	exon16	c.G2640T	p.E880D	ACCCACCTCAACA	.	40	25	63	0	.	138	A	14816776	C	A	14816776	3	1	39	1	0	0	0	0	1	0	0	0	6044	695	24	3	4041	3	FREM1	9	14816776	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	7830148	14816776	126396655	60	4759											
GNE	10020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36246477	36246477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GNE	NM_001128227	exon3	c.A260G	p.N87S	TATGTATTTCTAA	.	33	22	47	0	.	115	C	36246477	T	C	36246477	3	2	39	1	0	0	0	0	1	0	0	0	6522	1493	52	2	2041	2	GNE	9	36246477	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	21429701	36246477	104966954	61	4760											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73442764	73442764	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon6	c.A972T	p.T324T	CTTACTTGTGTTT	.	81	20	80	0	.	521	A	73442764	T	A	73442764	2	1	39	1	0	0	0	0	0	0	0	1	16584	1826	63	4		4	TRPM3	9	73442764	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	37196287	73442764	67770667	62	4761											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73479369	73479369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon2	c.C236G	p.P79R	GTGCTGGGTATGA	.	38	12	51	0	.	521	C	73479369	G	C	73479369	3	2	39	1	0	0	0	0	1	0	0	0	16584	1232	43	4	5106	4	TRPM3	9	73479369	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	36605	73479369	67734062	63	4762											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79322771	79322771	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PRUNE2	NM_015225	exon8	c.G4419A	p.E1473E	CTCTGGCTCTAGA	.	37	19	65	0	.	157	T	79322771	C	T	79322771	2	4	39	1	0	0	0	0	0	0	0	1	12641	796	28	3		3	PRUNE2	9	79322771	Silent	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	5843402	79322771	61890660	64	4763											
PSAT1	29968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	80923477	80923477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PSAT1	NM_021154	exon6	c.T718C	p.Y240H	TCCTTGTACAACA	.	31	18	40	0	.	91	C	80923477	T	C	80923477	3	2	39	1	0	0	0	0	1	0	0	0	12644	1638	57	2	740	2	PSAT1	9	80923477	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	1600706	80923477	60289954	65	4764											
GFI1B	8328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135862139	135862139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GFI1B	NM_001135031	exon2	c.C74T	p.P25L	ATGAACCGCTCTG	.	34	17	64	0	.	154	T	135862139	C	T	135862139	3	4	39	1	0	0	0	0	1	0	0	0	6340	652	23	1	76	1	GFI1B	9	135862139	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	54938662	135862139	5351292	66	4765											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138676396	138676396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNT1	NM_020822	exon26	c.T2959A	p.Y987N	AAGGACTACATGA	.	62	24	114	0	.	137	A	138676396	T	A	138676396	3	1	39	1	0	0	0	0	1	0	0	0	8091	1522	53	4	3061	4	KCNT1	9	138676396	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	2814257	138676396	2537035	67	4766											
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139612124	139612124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM69B	NM_152421	exon2	c.C159A	p.Y53X	GTCCTACTCGGAG	.	27	15	28	0	.	90	A	139612124	C	A	139612124	4	1	39	1	0	0	0	0	0	1	0	0	5603	576	20	3	165	3	FAM69B	9	139612124	Nonsense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	935728	139612124	1601307	68	4767											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34558586	34558586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PARD3	NM_019619	exon22	c.A3427G	p.S1143G	CCTACCTGTCTAC	.	77	28	96	0	.	92	C	34558586	T	C	34558586	3	2	39	1	0	0	0	0	1	0	0	0	11443	1594	55	2	659	2	PARD3	10	34558586	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10		34558586	100976161	69	4768											
CSTF2T	23283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	53458521	53458521	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSTF2T	NM_015235	exon1	c.A789T	p.P263P	TGGAGCTGGAATT	.	48	23	49	0	.	91	A	53458521	T	A	53458521	2	1	39	1	0	0	0	0	0	0	0	1	3985	1567	55	4		4	CSTF2T	10	53458521	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	18899935	53458521	82076226	70	4769											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	55582876	55582876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDH15	NM_001142763	exon35	c.C4631A	p.S1544X	TTTGTTGATACTT	.	53	22	65	0	.	193	T	55582876	G	T	55582876	4	4	39	1	0	0	0	0	0	1	0	0	11511	1294	45	3	2867	3	PCDH15	10	55582876	Nonsense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	2124355	55582876	79951871	71	4770											
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97916530	97916530	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF518A	.	.	.	.	TCATATCCTTGTG	.	82	28	161	0	.	23	T	97916530	C	T	97916530	1	4	39	0	1	0	0	0	0	0	0	0	17959	855	30	3		3	ZNF518A	10	97916530	RNA	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	42333654	97916530	37618217	72	4771											
SUFU	51684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104268937	104268937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SUFU	NM_001178133	exon2	c.C194A	p.P65Q	GTGGCCCAGACCC	.	62	21	81	0	.	2246	A	104268937	C	A	104268937	3	1	39	1	0	0	0	0	1	0	0	0	15367	594	21	3	200	3	SUFU	10	104268937	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	6352407	104268937	31265810	73	4772											
HPX	3263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6453022	6453022	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HPX	NM_000613	exon9	c.A978G	p.V326V	GACATATACCTGG	.	42	20	45	0	.	90	C	6453022	T	C	6453022	2	2	39	1	0	0	0	0	0	0	0	1	7346	1393	49	2		2	HPX	11	6453022	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10		6453022	128553494	74	4773											
RBMXL2	27288	broad.mit.edu;mdanderson.org	37	11	7110658	7110658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBMXL2	NM_014469	exon1	c.G307A	p.G103S	AGCCGCGGTCGCC	.	20	4	17	0	.	68	A	7110658	G	A	7110658	3	1	39	1	0	0	0	0	1	0	0	0	13154	1116	39	1	309	1	RBMXL2	11	7110658	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	657636	7110658	127895858	75	4774											
OLFML1	283298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7530924	7530924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OLFML1	NM_198474	exon3	c.A714C	p.K238N	AATCAAATATAAC	.	81	31	116	0	.	70	C	7530924	A	C	7530924	3	2	39	1	0	0	0	0	1	0	0	0	10856	98	4	5	724	5	OLFML1	11	7530924	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	420266	7530924	127475592	76	4775											
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22380971	22380971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC17A6	NM_020346	exon4	c.T471G	p.A157A	CGGAGCTGCCATA	.	47	20	62	0	.	580	G	22380971	T	G	22380971	2	3	39	1	0	0	0	0	0	0	0	1	14421	1567	55	5		5	SLC17A6	11	22380971	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	14850047	22380971	112625545	77	4776											
OR8J1	219477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56127868	56127868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR8J1	NM_001005205	exon1	c.C146A	p.T49N	CCCTCACCAGTGT	.	145	71	168	0	.	70	A	56127868	C	A	56127868	3	1	39	1	0	0	0	0	1	0	0	0	11241	507	18	3	148	3	OR8J1	11	56127868	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	33746897	56127868	78878648	78	4777											
AQP11	282679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77301269	77301269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AQP11	NM_173039	exon1	c.A232T	p.T78S	ACCTGGACGCTGA	.	46	19	51	0	.	90	T	77301269	A	T	77301269	3	4	39	1	0	0	0	0	1	0	0	0	823	275	10	4	234	4	AQP11	11	77301269	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	21173401	77301269	57705247	79	4778											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYNC2H1	NM_001377	exon19	c.G2758A	p.D920N	GTGATTGATGATC	.	46	14	61	0	.	68	A	103018556	G	A	103018556	3	1	39	1	0	0	0	0	1	0	0	0	4846	1290	45	3	2832	3	DYNC2H1	11	103018556	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	25717287	103018556	31987960	80	4779											
BUD13	84811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116628662	116628662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BUD13	NM_032725	exon8	c.G1504A	p.A502T	TCTGGGCAAGCCT	.	35	13	42	0	.	154	T	116628662	C	T	116628662	3	4	39	1	0	0	0	0	1	0	0	0	1573	710	25	3	367	3	BUD13	11	116628662	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	13610106	116628662	18377854	81	4780											
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095697	124095697	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001007249	exon1	c.A300C	p.T100T	TGTGACAGAGAAG	.	68	21	103	0	.	.	C	124095697	A	C	124095697	2	2	39	1	0	0	0	0	0	0	0	1	11235	175	7	5		5	OR8G2	11	124095697	Silent	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	7467035	124095697	10910819	82	4781											
DYRK4	8798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4722680	4722680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYRK4	NM_003845	exon13	c.G1324A	p.D442N	TTAGCAGATGAGA	.	174	60	228	1	.	360	A	4722680	G	A	4722680	3	1	39	1	0	0	0	0	1	0	0	0	4858	942	33	3	1366	3	DYRK4	12	4722680	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		4722680	129129215	83	4782											
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25002861	25002861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BCAT1	NM_001178093	exon6	c.C569A	p.P190H	TTGGTAGGCTTCT	.	79	36	102	0	.	522	T	25002861	G	T	25002861	3	4	39	1	0	0	0	0	1	0	0	0	1354	1000	35	3	651	3	BCAT1	12	25002861	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	20280181	25002861	108849034	84	4783											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43860553	43860553	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAMTS20	NM_025003	exon9	c.A1269G	p.K423K	TGTAACTTTCATT	.	54	17	79	0	.	795	C	43860553	T	C	43860553	2	2	39	1	0	0	0	0	0	0	0	1	266	1606	56	2		2	ADAMTS20	12	43860553	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	18857692	43860553	89991342	85	4784											
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54686660	54686660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NFE2	NM_001261461	exon4	c.C620T	p.P207L	GAGGAGGGCTCTA	.	103	26	151	0	.	226	A	54686660	G	A	54686660	3	1	39	1	0	0	0	0	1	0	0	0	10366	1232	43	3	505	3	NFE2	12	54686660	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	10826107	54686660	79165235	86	4785											
DEPDC4	120863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	100660786	100660786	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DEPDC4	NM_152317	exon1	c.T69A	p.L23L	ACTGACAAGTCTA	.	60	21	77	0	.	90	T	100660786	A	T	100660786	2	4	39	1	0	0	0	0	0	0	0	1	4441	117	5	4		4	DEPDC4	12	100660786	Silent	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	45974126	100660786	33191109	87	4786											
CHPT1	56994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102108302	102108302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CHPT1	NM_020244	exon3	c.T442G	p.S148A	GGAGCTTCAATTG	.	28	10	38	0	.	90	G	102108302	T	G	102108302	3	3	39	1	0	0	0	0	1	0	0	0	3370	1783	62	5	452	5	CHPT1	12	102108302	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	1447516	102108302	31743593	88	4787											
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102433674	102433674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_016053	exon5	c.A407G	p.Y136C	CTGGCATATCTTG	.	64	36	67	0	.	.	C	102433674	T	C	102433674	3	2	39	1	0	0	0	0	1	0	0	0	2823	1406	49	2	120	2	CCDC53	12	102433674	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	325372	102433674	31418221	89	4788											
UBC	7316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125397123	125397123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UBC	NM_021009	exon2	c.C1195T	p.P399S	CACTCGGCTCCAC	.	238	87	310	0	.	46	A	125397123	G	A	125397123	3	1	39	1	0	0	0	0	1	0	0	0	16839	1203	42	3	866	3	UBC	12	125397123	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	22963449	125397123	8454772	90	4789											
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46083887	46083887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	COG3	NM_031431	exon15	c.G1655T	p.G552V	TTCATGGAATGTG	.	83	30	200	0	.	154	T	46083887	G	T	46083887	3	4	39	1	0	0	0	0	1	0	0	0	3659	1174	41	3	1713	3	COG3	13	46083887	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		46083887	69085991	91	4790											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954325	48954326	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1446_1447del	p.482_483del	CATTTTTCATATG	.	44	20	204	0	.	3784	-	48954326	TC	-	48954325	7	5	39	1	0	1	0	1	0	0	0	0	13098	1780	62	0	1508	0	RB1	13	48954325	Frame_Shift_Del	DEL	TC	TCGA-CC-A7IF-01A-11D-A33K-10	2870438	48954325	66215553	92	4791	30	2									
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954328	48954334	+	Frame_Shift_Del	DEL	TATGTCT	TATGTCT	-	rs5803433	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TATGTCT	TATGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1449_1455del	p.483_485del	TTTTCATATGTCT	.	36	20	206	0	.	3784	-	48954334	TATGTCT	-	48954328	7	5	39	1	0	1	0	1	0	0	0	0	13098	1403	49	0	1511	0	RB1	13	48954328	Frame_Shift_Del	DEL	TATGTCT	TCGA-CC-A7IF-01A-11D-A33K-10	3	48954328	66215550	93	4792	30	2									
UGGT2	55757	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	96555132	96555132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGGT2	NM_020121	exon21	c.T2478C	p.D826D	AATTTTATCTCCA	.	94	20	83	0	.	92	G	96555132	A	G	96555132	2	3	39	1	0	0	0	0	0	0	0	1	16939	446	16	2		2	UGGT2	13	96555132	Silent	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	47600804	96555132	18614746	94	4793											
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	34269611	34269611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NPAS3	NM_001164749	exon12	c.G2098T	p.G700W	GGCGGTGGGGGTG	.	74	16	92	0	.	93	T	34269611	G	T	34269611	3	4	39	1	0	0	0	0	1	0	0	0	10564	1348	47	3	2199	3	NPAS3	14	34269611	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		34269611	73079929	95	4794											
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88707142	88707142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNK10	NM_138318	exon3	c.C425T	p.A142V	ACTCCCGCATTGT	.	29	12	49	0	.	95	A	88707142	G	A	88707142	3	1	39	1	0	0	0	0	1	0	0	0	8059	1087	38	1	1226	1	KCNK10	14	88707142	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	54437531	88707142	18642398	96	4795											
CATSPERB	79820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92058310	92058310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CATSPERB	NM_024764	exon23	c.A2746G	p.T916A	CCCGAGTGGAAAC	.	88	34	118	2	.	138	C	92058310	T	C	92058310	3	2	39	1	0	0	0	0	1	0	0	0	2691	1696	59	2	624	2	CATSPERB	14	92058310	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	3351168	92058310	15291230	97	4796											
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93720042	93720042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BTBD7	NM_001002860	exon7	c.G1703A	p.G568D	TAGATGCCAGCAT	.	62	20	61	0	.	91	T	93720042	C	T	93720042	3	4	39	1	0	0	0	0	1	0	0	0	1546	739	26	3	1715	3	BTBD7	14	93720042	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	1661732	93720042	13629498	98	4797											
BAG5	9529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104026264	104026264	+	Missense_Mutation	SNP	T	T	C	rs143892215	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BAG5	NM_001015049	exon2	c.A1361G	p.D454G	TGCGGATCAACAG	.	98	44	121	0	T|1.000;A|0.000	229	C	104026264	T	C	104026264	3	2	39	1	0	0	0	0	1	0	0	0	1290	1435	50	2	109	2	BAG5	14	104026264	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	10306222	104026264	3323276	99	4798											
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34109089	34109089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RYR3	NM_001036	exon75	c.A10529T	p.H3510L	TCCTCCATGGCTA	.	94	29	112	1	.	520	T	34109089	A	T	34109089	3	4	39	1	0	0	0	0	1	0	0	0	13770	217	8	4	10827	4	RYR3	15	34109089	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10		34109089	68422303	100	4799											
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38794569	38794569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP1	NM_005739	exon12	c.A1482C	p.E494D	TTCAAATTCTTCC	.	78	43	88	0	.	697	G	38794569	T	G	38794569	3	3	39	1	0	0	0	0	1	0	0	0	13074	1490	52	5	935	5	RASGRP1	15	38794569	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	4685480	38794569	63736823	101	4800											
VPS13C	54832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62201321	62201321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS13C	NM_020821	exon65	c.G8848A	p.G2950R	TACCCCCATTCTA	.	81	10	73	0	.	92	T	62201321	C	T	62201321	3	4	39	1	0	0	0	0	1	0	0	0	17188	594	21	3	2525	3	VPS13C	15	62201321	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	23406752	62201321	40330071	102	4801											
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68657110	68657110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ITGA11	NM_001004439	exon4	c.G292A	p.E98K	TCCGCTCGGACAC	.	123	28	118	0	.	538	T	68657110	C	T	68657110	3	4	39	1	0	0	0	0	1	0	0	0	7874	893	31	1	3382	1	ITGA11	15	68657110	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	6455789	68657110	33874282	103	4802											
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2499459	2499459	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCNF	NM_001761	exon12	c.G1395T	p.G465G	GCACGGGCAGAGT	.	13	6	14	0	.	658	T	2499459	G	T	2499459	2	4	39	1	0	0	0	0	0	0	0	1	2922	1190	42	3		3	CCNF	16	2499459	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		2499459	87855294	104	4803											
EMP2	2013	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	10631874	10631874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EMP2	NM_001424	exon4	c.G227T	p.C76F	GCGATGCAGCAGA	.	65	25	81	1	.	90	A	10631874	C	A	10631874	3	1	39	1	0	0	0	0	1	0	0	0	5102	710	25	3	284	3	EMP2	16	10631874	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	8132415	10631874	79722879	105	4804											
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	24579152	24579152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBBP6	NM_006910	exon16	c.T1992G	p.D664E	AAATGATTTTGCT	.	178	15	250	0	.	230	G	24579152	T	G	24579152	3	3	39	1	0	0	0	0	1	0	0	0	13103	1490	52	5	2108	5	RBBP6	16	24579152	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	13947278	24579152	65775601	106	4805											
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47005262	47005262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAJA2	NM_005880	exon3	c.A361C	p.K121Q	TTCACTTGAGTGG	.	225	158	99	0	.	226	G	47005262	T	G	47005262	3	3	39	1	0	0	0	0	1	0	0	0	4612	1826	63	5	905	5	DNAJA2	16	47005262	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	22426110	47005262	43349491	107	4806											
CD68	968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7483022	7483022	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CD68	NM_001040059	exon1	c.G27C	p.G9G	CTCGGGGGCCCTG	.	22	12	55	0	.	90	C	7483022	G	C	7483022	2	2	39	1	0	0	0	0	0	0	0	1	3030	1219	43	4		4	CD68	17	7483022	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		7483022	73712188	108	4807											
MAPK7	5598	bcgsc.ca;mdanderson.org	37	17	19285377	19285377	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAPK7	NM_002749	exon5	c.G1761T	p.P587P	TGTGCCGGCCCCT	.	68	53	116	2	.	1402	T	19285377	G	T	19285377	2	4	39	1	0	0	0	0	0	0	0	1	9282	1103	39	1		1	MAPK7	17	19285377	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	11802355	19285377	61909833	109	4808											
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37347830	37347830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNB1	NM_199248	exon3	c.A188G	p.Y63C	CTGGTGTAGGACT	.	46	12	64	0	.	154	C	37347830	T	C	37347830	3	2	39	1	0	0	0	0	1	0	0	0	2552	1638	57	2	1920	2	CACNB1	17	37347830	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	18062453	37347830	43847380	110	4809											
MAP3K14	9020	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43366633	43366633	+	RNA	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP3K14	.	.	.	.	AAATGCGTTCTGA	.	135	77	115	0	.	1453	C	43366633	G	C	43366633	1	2	39	0	1	0	0	0	0	0	0	0	9248	1145	40	4		4	MAP3K14	17	43366633	RNA	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	6018803	43366633	37828577	111	4810											
MEX3C	51320	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702884	48702884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MEX3C	NM_016626	exon2	c.A1817C	p.H606P	CAGTCGTGCTTTC	.	128	42	200	1	.	659	G	48702884	T	G	48702884	3	3	39	1	0	0	0	0	1	0	0	0	9511	1696	59	5	166	5	MEX3C	18	48702884	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10		48702884	29374364	112	4811											
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60242216	60242216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZCCHC2	NM_017742	exon13	c.C2902G	p.P968A	CCAGGCCCTGCCC	.	52	21	58	0	.	432	G	60242216	C	G	60242216	3	3	39	1	0	0	0	0	1	0	0	0	17584	623	22	4	2952	4	ZCCHC2	18	60242216	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	11539332	60242216	17835032	113	4812											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63511191	63511191	+	Silent	SNP	T	T	A	rs139333396	byfrequency;alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CDH7	NM_004361	exon7	c.T1125A	p.P375P	GCCCCCTGTGTTC	.	137	48	183	0	T|0.999;C|0.001	94	A	63511191	T	A	63511191	2	1	39	1	0	0	0	0	0	0	0	1	3115	1567	55	4		4	CDH7	18	63511191	Silent	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	3268975	63511191	14566057	114	4813											
BSG	682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	579633	579633	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BSG	NM_001728	exon3	c.G549A	p.L183L	CGCGCTGCCCGGC	.	25	9	46	0	.	90	A	579633	G	A	579633	2	1	39	1	0	0	0	0	0	0	0	1	1529	1306	46	3		3	BSG	19	579633	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		579633	58549350	115	4814											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9059979	9059979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon3	c.C27467A	p.S9156Y	GGAGAAGATGAGG	.	66	19	95	0	.	566	T	9059979	G	T	9059979	3	4	39	1	0	0	0	0	1	0	0	0	9973	942	33	3	16384	3	MUC16	19	9059979	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	8480346	9059979	50069004	116	4815											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9084032	9084032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon1	c.A7783T	p.S2595C	AAAGGCTCTCAGG	.	96	23	128	0	.	566	A	9084032	T	A	9084032	3	1	39	1	0	0	0	0	1	0	0	0	9973	1551	54	4	36076	4	MUC16	19	9084032	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	24053	9084032	50044951	117	4816											
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13054713	13054713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALR	NM_004343	exon9	c.A1240G	p.K414E	CAGGCCAAGGACG	.	109	37	181	0	.	91	G	13054713	A	G	13054713	3	3	39	1	0	0	0	0	1	0	0	0	2592	131	5	2	1274	2	CALR	19	13054713	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	3970681	13054713	46074270	118	4817											
STX10	8677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13259885	13259886	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	STX10	NM_003765	exon4	c.321_322insT	p.V107fs	TGGGCTGACCATA	.	71	16	139	0	.	90	A	13259886	-	A	13259885	7	5	39	1	0	1	1	0	0	0	0	0	15335	1277	45	0	447	0	STX10	19	13259885	Frame_Shift_Ins	INS	-	TCGA-CC-A7IF-01A-11D-A33K-10	205172	13259885	45869098	119	4818											
NWD1	284434	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	16890277	16890277	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NWD1	NM_001007525	exon12	c.2731+1G>C	.	ACACAGGTGAGAC	.	11	4	21	0	.	7	C	16890277	G	C	16890277	5	2	39	1	0	0	0	0	0	0	1	0	10781	1275	44	4	2357	4	NWD1	19	16890277	Splice_Site	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	3630392	16890277	42238706	120	4819											
RASGRP4	115727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38907809	38907809	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP4	NM_001146202	exon9	c.796-1G>T	.	GAGCCTCTAGGAA	.	16	9	62	0	.	660	A	38907809	C	A	38907809	5	1	39	1	0	0	0	0	0	0	1	0	13077	927	32	3	1224	3	RASGRP4	19	38907809	Splice_Site	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	22017532	38907809	20221174	121	4820											
MYPOP	339344	broad.mit.edu;bcgsc.ca	37	19	46404577	46404577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MYPOP	NM_001012643	exon2	c.A455T	p.Q152L	TAGCGCTGAGGGC	.	27	9	45	0	.	90	A	46404577	T	A	46404577	3	1	39	1	0	0	0	0	1	0	0	0	10099	1580	55	4	752	4	MYPOP	19	46404577	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	7496768	46404577	12724406	122	4821											
NOVA2	4858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46457041	46457041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NOVA2	NM_002516	exon3	c.G393T	p.K131N	GACCTGCTTGGCT	.	67	25	140	0	.	226	A	46457041	C	A	46457041	3	1	39	1	0	0	0	0	1	0	0	0	10555	796	28	3	1093	3	NOVA2	19	46457041	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	52464	46457041	12671942	123	4822											
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734194	48734194	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CARD8	NM_001184900	exon6	c.G612A	p.E204E	TGTGACCTCATCC	.	98	68	135	0	.	227	T	48734194	C	T	48734194	2	4	39	1	0	0	0	0	0	0	0	1	2651	680	24	3		3	CARD8	19	48734194	Silent	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	2277153	48734194	10394789	124	4823											
ZNF135	7694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579143	58579143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF135	NM_007134	exon4	c.A1363G	p.I455V	CGGAGGATTCACA	.	74	9	111	0	.	91	G	58579143	A	G	58579143	3	3	39	1	0	0	0	0	1	0	0	0	17722	333	12	2	1494	2	ZNF135	19	58579143	Missense_Mutation	SNP	A	TCGA-CC-A7IF-01A-11D-A33K-10	9844949	58579143	549840	125	4824											
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3739248	3739248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C20orf27	NM_001039140	exon3	c.G172T	p.D58Y	TCTCATCAAAGTG	.	23	18	46	0	.	90	A	3739248	C	A	3739248	3	1	39	1	0	0	0	0	1	0	0	0	2107	826	29	3	443	3	C20orf27	20	3739248	Missense_Mutation	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10		3739248	59286272	126	4825											
SSTR4	6754	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23016896	23016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SSTR4	NM_001052	exon1	c.G776A	p.R259K	TCACCAGGCTGGT	.	33	10	44	0	.	522	A	23016896	G	A	23016896	3	1	39	1	0	0	0	0	1	0	0	0	15199	1000	35	3	778	3	SSTR4	20	23016896	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	19277648	23016896	40008624	127	4826											
SGSM1	129049	bcgsc.ca;mdanderson.org	37	22	25270403	25270403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SGSM1	NM_133454	exon13	c.G1313A	p.S438N	TGGGCAGCACTTC	.	64	29	80	2	.	27	A	25270403	G	A	25270403	3	1	39	1	0	0	0	0	1	0	0	0	14222	971	34	3	1363	3	SGSM1	22	25270403	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		25270403	26034163	128	4827											
MN1	4330	broad.mit.edu;mdanderson.org	37	22	28196151	28196151	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MN1	NM_002430	exon1	c.C381T	p.C127C	GTGCAGGCACGAG	.	15	6	15	0	.	993	A	28196151	G	A	28196151	2	1	39	1	0	0	0	0	0	0	0	1	9673	1195	42	3		3	MN1	22	28196151	Silent	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10	2925748	28196151	23108415	129	4828											
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48418242	48418242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TBC1D25	NM_002536	exon6	c.G946T	p.D316Y	CTGCACGACCTGC	.	63	53	77	0	.	131	T	48418242	G	T	48418242	3	4	39	1	0	0	0	0	1	0	0	0	15612	1058	37	1	968	1	TBC1D25	23	48418242	Missense_Mutation	SNP	G	TCGA-CC-A7IF-01A-11D-A33K-10		48418242	106852318	130	4829											
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100808723	100808724	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	p.L271I	CAATGCCCTTAAT	.	33	27	34	0	.	.	AA	100808724	CC	AA	100808723	3	1	39	1	0	0	0	0	1	0	0	0	959	610	22	3	812	3	ARMCX1	23	100808723	Missense_Mutation	DNP	CC	TCGA-CC-A7IF-01A-11D-A33K-10	52390481	100808723	54461837	131	4830											
RHOXF1	158800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119243261	119243261	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RHOXF1	NM_139282	exon4	c.445-1G>C	.	CCAAACCTACAAT	.	39	35	64	0	.	130	G	119243261	C	G	119243261	5	3	39	1	0	0	0	0	0	0	1	0	13347	695	24	4	114	4	RHOXF1	23	119243261	Splice_Site	SNP	C	TCGA-CC-A7IF-01A-11D-A33K-10	18434538	119243261	36027299	132	4831											
GPR119	139760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129518890	129518890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR119	NM_178471	exon1	c.A532T	p.M178L	GGAGCATGGCTGG	.	38	32	54	0	.	132	A	129518890	T	A	129518890	3	1	39	1	0	0	0	0	1	0	0	0	6634	1464	51	4	479	4	GPR119	23	129518890	Missense_Mutation	SNP	T	TCGA-CC-A7IF-01A-11D-A33K-10	10275629	129518890	25751670	133	4832											
RPS4Y1	6192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	2722723	2722724	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RPS4Y1	NM_001008	exon5	c.443_444insCT	p.R148fs	CCATCCGCTACCC	.	122	99	141	0	.	424	CT	2722724	-	CT	2722723	7	5	39	1	0	1	1	0	0	0	0	0	13646	1087	38	0	461	0	RPS4Y1	24	2722723	Frame_Shift_Ins	INS	-	TCGA-CC-A7IF-01A-11D-A33K-10		2722723	56650843	134	4833											
TAS1R1	80835	broad.mit.edu;mdanderson.org	37	1	6635435	6635435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TAS1R1	NM_138697	exon3	c.C1243T	p.R415X	AGGGGCCGAGTCT	.	44	32	62	1	.	516	T	6635435	C	T	6635435	4	4	40	1	0	0	0	0	0	1	0	0	15559	644	23	1	1253	1	TAS1R1	1	6635435	Nonsense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10		6635435	242615186	1	4834											
SPOCD1	90853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32256443	32256443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SPOCD1	NM_144569	exon16	c.C3412T	p.H1138Y	GGAAGTGCTGGCC	.	66	49	76	0	.	158	A	32256443	G	A	32256443	3	1	40	1	0	0	0	0	1	0	0	0	15077	1319	46	3	242	3	SPOCD1	1	32256443	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	25621008	32256443	216994178	2	4835											
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60324102	60324102	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HOOK1	NM_015888	exon13	c.A1245G	p.R415R	TCAGAGACTAATT	.	206	167	251	0	.	154	G	60324102	A	G	60324102	2	3	40	1	0	0	0	0	0	0	0	1	7282	272	10	2		2	HOOK1	1	60324102	Silent	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	28067659	60324102	188926519	3	4836											
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152733416	152733416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KPRP	NM_001025231	exon2	c.G1352T	p.R451L	TTCCTCGCCCAGG	.	52	48	32	0	.	95	T	152733416	G	T	152733416	3	4	40	1	0	0	0	0	1	0	0	0	8436	1087	38	1	1354	1	KPRP	1	152733416	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	92409314	152733416	96517205	4	4837											
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154320946	154320946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ATP8B2	NM_020452	exon27	c.G3325A	p.V1109I	ACAGTCGTCTGCA	.	113	94	75	0	.	92	A	154320946	G	A	154320946	3	1	40	1	0	0	0	0	1	0	0	0	1195	1145	40	1	3561	1	ATP8B2	1	154320946	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	1587530	154320946	94929675	5	4838											
RUSC1	23623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155292170	155292170	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RUSC1	NM_001105203	exon2	c.G606A	p.R202R	CGAGAGGGCGGAG	.	363	310	228	0	.	92	A	155292170	G	A	155292170	2	1	40	1	0	0	0	0	0	0	0	1	13750	1223	43	3		3	RUSC1	1	155292170	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	971224	155292170	93958451	6	4839											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517456	158517456	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	OR6Y1	NM_001005189	exon1	c.G440C	p.G147A	AGTGTGCCACAGA	.	91	83	72	0	.	69	G	158517456	C	G	158517456	3	3	40	1	0	0	0	0	1	0	0	0	11213	739	26	4	539	4	OR6Y1	1	158517456	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	3225286	158517456	90733165	7	4840											
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162344018	162344018	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C1orf111	NM_182581	exon3	c.C606A	p.I202I	CCTCTTGATGTGG	.	122	42	89	0	.	69	T	162344018	G	T	162344018	2	4	40	1	0	0	0	0	0	0	0	1	1984	1280	45	3		3	C1orf111	1	162344018	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	3826562	162344018	86906603	8	4841											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220406172	220406172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RAB3GAP2	NM_012414	exon2	c.G149T	p.G50V	CATGCTCCCCAAC	.	213	178	111	0	.	90	A	220406172	C	A	220406172	3	1	40	1	0	0	0	0	1	0	0	0	12936	855	30	3	4168	3	RAB3GAP2	1	220406172	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	58062154	220406172	28844449	9	4842											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1241790	1241790	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SNTG2	NM_018968	exon10	c.849+1G>A	.	CAGAACGTGAGCA	.	51	15	44	0	.	136	A	1241790	G	A	1241790	5	1	40	1	0	0	0	0	0	0	1	0	14875	1159	40	1	888	1	SNTG2	2	1241790	Splice_Site	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		1241790	241957583	10	4843											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	21246408	21246408	+	Nonsense_Mutation	SNP	C	C	A	rs150005693	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	APOB	NM_000384	exon17	c.G2593T	p.E865X	CTACTTCCAGTTT	.	101	64	76	0	C|1.000;T|0.000	175	A	21246408	C	A	21246408	4	1	40	1	0	0	0	0	0	1	0	0	785	864	30	3	11150	3	APOB	2	21246408	Nonsense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	20004618	21246408	221952965	11	4844											
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27156187	27156187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DPYSL5	NM_001253724	exon7	c.C776G	p.A259G	TCGCAGCTGCTAA	.	129	65	99	0	.	92	G	27156187	C	G	27156187	3	3	40	1	0	0	0	0	1	0	0	0	4750	797	28	4	798	4	DPYSL5	2	27156187	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	5909779	27156187	216043186	12	4845											
FEZ2	9637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36808548	36808548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FEZ2	NM_001042548	exon4	c.G519A	p.M173I	TTCCTGCATCATT	.	175	16	146	0	.	23	T	36808548	C	T	36808548	3	4	40	1	0	0	0	0	1	0	0	0	5824	710	25	3	647	3	FEZ2	2	36808548	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	9652361	36808548	206390825	13	4846											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013401	99013401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CNGA3	NM_001298	exon8	c.G1768A	p.E590K	CTCACCGAGTACC	.	53	17	57	0	.	96	A	99013401	G	A	99013401	3	1	40	1	0	0	0	0	1	0	0	0	3598	1059	37	1	1794	1	CNGA3	2	99013401	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	62204853	99013401	144185972	14	4847											
SH3RF3	344558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109964184	109964184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SH3RF3	NM_001099289	exon2	c.C628A	p.P210T	AAGGAACCTGGTG	.	90	9	153	0	.	24	A	109964184	C	A	109964184	3	1	40	1	0	0	0	0	1	0	0	0	14260	507	18	3	634	3	SH3RF3	2	109964184	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	10950783	109964184	133235189	15	4848											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162719562	162719562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC4A10	NM_001178016	exon7	c.G789T	p.M263I	TTCCATGGACAAA	.	110	92	136	0	.	229	T	162719562	G	T	162719562	3	4	40	1	0	0	0	0	1	0	0	0	14651	1348	47	3	863	3	SLC4A10	2	162719562	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	52755378	162719562	80479811	16	4849											
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171092541	171092541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYO3B	NM_001083615	exon7	c.C644A	p.A215D	ATGACGCTCGCTG	.	78	17	77	0	.	530	A	171092541	C	A	171092541	3	1	40	1	0	0	0	0	1	0	0	0	10077	797	28	3	670	3	MYO3B	2	171092541	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	8372979	171092541	72106832	17	4850											
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220404347	220404347	+	Missense_Mutation	SNP	C	C	T	rs142415191	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CHPF	NM_024536	exon4	c.G2086A	p.E696K	CTTGTTCTGAGGC	.	171	54	192	0	C|0.999;G|0.000;T|0.000	90	T	220404347	C	T	220404347	3	4	40	1	0	0	0	0	1	0	0	0	3368	922	32	3	245	3	CHPF	2	220404347	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	49311806	220404347	22795026	18	4851											
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45153829	45153829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CDCP1	NM_178181	exon3	c.G401T	p.S134I	CCGATGCTCTTAT	.	163	96	140	0	.	117	A	45153829	C	A	45153829	3	1	40	1	0	0	0	0	1	0	0	0	3093	797	28	3	2145	3	CDCP1	3	45153829	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10		45153829	152868601	19	4852											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47043973	47043973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NBEAL2	NM_015175	exon32	c.G5264T	p.R1755L	AGCGGCGCCAGTG	.	46	27	56	0	.	69	T	47043973	G	T	47043973	3	4	40	1	0	0	0	0	1	0	0	0	10189	1087	38	1	5390	1	NBEAL2	3	47043973	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	1890144	47043973	150978457	20	4853											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47155493	47155493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SETD2	NM_014159	exon5	c.T4588A	p.S1530T	GAGAAGAACTGAA	.	166	12	116	0	.	1273	T	47155493	A	T	47155493	3	4	40	1	0	0	0	0	1	0	0	0	14131	260	9	4	3174	4	SETD2	3	47155493	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	111520	47155493	150866937	21	4854											
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93755396	93755396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ARL13B	NM_182896	exon5	c.G487A	p.E163K	TTTTAGGAACCAT	.	361	37	282	0	.	91	A	93755396	G	A	93755396	3	1	40	1	0	0	0	0	1	0	0	0	929	1188	41	3	505	3	ARL13B	3	93755396	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	46599903	93755396	104267034	22	4855											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108203979	108203979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYH15	NM_014981	exon12	c.A1133G	p.Q378R	GGTTTCTGTTTAA	.	70	29	65	0	.	73	C	108203979	T	C	108203979	3	2	40	1	0	0	0	0	1	0	0	0	10034	1580	55	2	4831	2	MYH15	3	108203979	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	14448583	108203979	89818451	23	4856											
SLC35A5	55032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112300032	112300032	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC35A5	NM_017945	exon6	c.C1068T	p.S356S	GCCCTCCCTGGAA	.	136	44	118	0	.	91	T	112300032	C	T	112300032	2	4	40	1	0	0	0	0	0	0	0	1	14574	610	22	3		3	SLC35A5	3	112300032	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	4096053	112300032	85722398	24	4857											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112326103	112326103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCDC80	NM_199511	exon7	c.G2426A	p.G809D	CGCAGACCTGAGA	.	129	19	85	0	.	92	T	112326103	C	T	112326103	3	4	40	1	0	0	0	0	1	0	0	0	2854	521	18	3	434	3	CCDC80	3	112326103	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	26071	112326103	85696327	25	4858											
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	126062613	126062613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KLF15	NM_014079	exon3	c.A1208T	p.H403L	AAGCGGTGCACCT	.	210	52	261	0	.	91	A	126062613	T	A	126062613	3	1	40	1	0	0	0	0	1	0	0	0	8343	1696	59	4	46	4	KLF15	3	126062613	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	13736510	126062613	71959817	26	4859											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130103715	130103715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_153264	exon5	c.C1369A	p.Q457K	GAGAAACAGTTTG	.	131	69	100	0	.	.	A	130103715	C	A	130103715	3	1	40	1	0	0	0	0	1	0	0	0	3702	479	17	3	1383	3	COL6A5	3	130103715	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	4041102	130103715	67918715	27	4860	31	2									
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130103724	130103724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_153264	exon5	c.C1378G	p.Q460E	TTTGAGCAAATCA	.	134	67	103	0	.	.	G	130103724	C	G	130103724	3	3	40	1	0	0	0	0	1	0	0	0	3702	711	25	4	1392	4	COL6A5	3	130103724	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	9	130103724	67918706	28	4861	31	2									
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150127752	150127752	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TSC22D2	NM_014779	exon1	c.C615T	p.S205S	ACACAGCAGTACT	.	111	26	101	0	.	91	T	150127752	C	T	150127752	2	4	40	1	0	0	0	0	0	0	0	1	16605	709	25	3		3	TSC22D2	3	150127752	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	20024028	150127752	47894678	29	4862											
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167277885	167277885	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	WDR49	NM_178824	exon5	c.G618A	p.R206R	CAAAAGCCGAGTC	.	138	35	94	0	.	155	T	167277885	C	T	167277885	2	4	40	1	0	0	0	0	0	0	0	1	17299	726	26	3		3	WDR49	3	167277885	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	17150133	167277885	30744545	30	4863											
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184295208	184295208	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EPHB3	NM_004443	exon6	c.C1432A	p.R478R	CCAGAGCGGCCCA	.	377	201	380	0	.	1455	A	184295208	C	A	184295208	2	1	40	1	0	0	0	0	0	0	0	1	5176	759	27	1		1	EPHB3	3	184295208	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	17017323	184295208	13727222	31	4864											
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	197687166	197687166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LMLN	NM_001136049	exon1	c.G74T	p.G25V	GCCCGGGCCGGAG	.	114	33	92	0	.	91	T	197687166	G	T	197687166	3	4	40	1	0	0	0	0	1	0	0	0	8847	1203	42	3	76	3	LMLN	3	197687166	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	13391958	197687166	335264	32	4865											
ZFYVE28	57732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2273119	2273119	+	Silent	SNP	G	G	A	rs146945400		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZFYVE28	NM_020972	exon12	c.C2451T	p.D817D	GGCCTCGTCTGGC	.	120	29	93	0	G|1.000;A|0.000	93	A	2273119	G	A	2273119	2	1	40	1	0	0	0	0	0	0	0	1	17667	1136	40	1		1	ZFYVE28	4	2273119	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		2273119	188881157	33	4866											
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7705958	7705958	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SORCS2	NM_020777	exon14	c.G1815T	p.S605S	CACCTCGGTGTTT	.	85	24	60	0	.	91	T	7705958	G	T	7705958	2	4	40	1	0	0	0	0	0	0	0	1	14931	1103	39	1		1	SORCS2	4	7705958	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	5432839	7705958	183448318	34	4867											
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40351330	40351330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CHRNA9	NM_017581	exon4	c.G797T	p.G266V	CCTCCGGAGAAAA	.	252	138	208	0	.	96	T	40351330	G	T	40351330	3	4	40	1	0	0	0	0	1	0	0	0	3389	1174	41	3	811	3	CHRNA9	4	40351330	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	32645372	40351330	150802946	35	4868											
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55156636	55156636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PDGFRA	NM_006206	exon22	c.A3037G	p.S1013G	AGACTGAGCGCTG	.	186	24	126	0	.	9497	G	55156636	A	G	55156636	3	3	40	1	0	0	0	0	1	0	0	0	11661	304	11	2	3119	2	PDGFRA	4	55156636	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	14805306	55156636	135997640	36	4869											
HHIP	64399	broad.mit.edu;bcgsc.ca	37	4	145627786	145627786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HHIP	NM_022475	exon5	c.T935C	p.I312T	GGGCTATCGGGCC	.	124	9	207	0	.	283	C	145627786	T	C	145627786	3	2	40	1	0	0	0	0	1	0	0	0	7092	1435	50	2	953	2	HHIP	4	145627786	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	90471150	145627786	45526490	37	4870											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	475176	475176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC9A3	NM_004174	exon16	c.C2323A	p.L775M	GAGACAGCCAGGG	.	93	44	107	0	.	90	T	475176	G	T	475176	3	4	40	1	0	0	0	0	1	0	0	0	14713	962	34	3	189	3	SLC9A3	5	475176	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		475176	180440084	38	4871											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1406399	1406399	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC6A3	NM_001044	exon12	c.T1503A	p.V501V	CTGCCCAACACCT	.	86	27	87	0	.	157	T	1406399	A	T	1406399	2	4	40	1	0	0	0	0	0	0	0	1	14685	117	5	4		4	SLC6A3	5	1406399	Silent	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	931223	1406399	179508861	39	4872											
ERBB2IP	55914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65371047	65371047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ERBB2IP	NM_001253699	exon23	c.G3973T	p.A1325S	GAACTGGCAAAAC	.	323	155	294	0	.	653	T	65371047	G	T	65371047	3	4	40	1	0	0	0	0	1	0	0	0	5207	1203	42	3	3907	3	ERBB2IP	5	65371047	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	63964648	65371047	115544213	40	4873											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816787	82816787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	VCAN	NM_004385	exon7	c.T2662A	p.S888T	ACTACATCAACTG	.	114	52	84	0	.	238	A	82816787	T	A	82816787	3	1	40	1	0	0	0	0	1	0	0	0	17135	1435	50	4	2684	4	VCAN	5	82816787	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	17445740	82816787	98098473	41	4874											
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135561777	135561777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_020389	exon9	c.A2207T	p.K736M	TTGGCCTTAGATT	.	148	50	122	0	.	.	A	135561777	T	A	135561777	3	1	40	1	0	0	0	0	1	0	0	0	16581	1609	56	4	397	4	TRPC7	5	135561777	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	52744990	135561777	45353483	42	4875											
KDM3B	51780	broad.mit.edu;bcgsc.ca	37	5	137754700	137754700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KDM3B	NM_016604	exon14	c.G3494C	p.G1165A	GTGGAGGAGGACC	.	333	15	266	1	.	542	C	137754700	G	C	137754700	3	2	40	1	0	0	0	0	1	0	0	0	8127	1174	41	4	3548	4	KDM3B	5	137754700	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	2192923	137754700	43160560	43	4876											
KDM3B	51780	broad.mit.edu;bcgsc.ca	37	5	137766109	137766109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KDM3B	NM_016604	exon22	c.C5065T	p.H1689Y	GCCCCACACCAGG	.	136	11	125	1	.	542	T	137766109	C	T	137766109	3	4	40	1	0	0	0	0	1	0	0	0	8127	478	17	3	5151	3	KDM3B	5	137766109	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	11409	137766109	43149151	44	4877											
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140180920	140180920	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHA3	NM_031497	exon1	c.C138A	p.G46G	CGTGGGCCGCATC	.	51	16	57	0	.	98	A	140180920	C	A	140180920	2	1	40	1	0	0	0	0	0	0	0	1	11525	726	26	3		3	PCDHA3	5	140180920	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	2414811	140180920	40734340	45	4878											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222940	140222940	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHA8	NM_031856	exon1	c.G2034A	p.A678A	AAAAGCGTCATCG	.	95	55	83	0	.	92	A	140222940	G	A	140222940	2	1	40	1	0	0	0	0	0	0	0	1	11530	1132	40	1		1	PCDHA8	5	140222940	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	42020	140222940	40692320	46	4879											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140562729	140562730	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHB16	NM_020957	exon1	c.595_596insA	p.E199fs	GATAAAGAGCTGG	.	76	27	69	0	.	92	A	140562730	-	A	140562729	7	5	40	1	0	1	1	0	0	0	0	0	11541	943	33	0	597	0	PCDHB16	5	140562729	Frame_Shift_Ins	INS	-	TCGA-CC-A7IG-01A-11D-A33K-10	339789	140562729	40352531	47	4880											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140573693	140573693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHB10	NM_018930	exon1	c.C1568A	p.A523D	ACGAGGCCCTGCA	.	62	21	53	0	.	92	A	140573693	C	A	140573693	3	1	40	1	0	0	0	0	1	0	0	0	11535	739	26	3	1570	3	PCDHB10	5	140573693	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	10964	140573693	40341567	48	4881											
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156890181	156890181	+	Missense_Mutation	SNP	C	C	A	rs200083422		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NIPAL4	NM_001099287	exon2	c.C303A	p.S101R	GCCCAGCAATGCC	.	99	28	120	0	C|0.999;A|0.001	68	A	156890181	C	A	156890181	3	1	40	1	0	0	0	0	1	0	0	0	10427	709	25	3	309	3	NIPAL4	5	156890181	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	16316488	156890181	24025079	49	4882											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169081429	169081429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DOCK2	NM_004946	exon2	c.C66A	p.S22R	AGGCAGCGGAGCC	.	50	16	51	0	.	97	A	169081429	C	A	169081429	3	1	40	1	0	0	0	0	1	0	0	0	4687	767	27	1	72	1	DOCK2	5	169081429	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	12191248	169081429	11833831	50	4883											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	6248626	6248626	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	F13A1	NM_000129	exon6	c.C717A	p.C239X	ATACAGGCAAGTG	.	60	24	35	0	.	519	T	6248626	G	T	6248626	4	4	40	1	0	0	0	0	0	1	0	0	5340	1195	42	3	1521	3	F13A1	6	6248626	Nonsense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		6248626	164866441	51	4884											
MYLIP	29116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	16145305	16145305	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYLIP	NM_013262	exon6	c.T1005A	p.V335V	TGGCGTTGTGGAC	.	213	97	141	0	.	91	A	16145305	T	A	16145305	2	1	40	1	0	0	0	0	0	0	0	1	10055	1799	63	4		4	MYLIP	6	16145305	Silent	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	9896679	16145305	154969762	52	4885											
SLC17A1	6568	hgsc.bcm.edu;bcgsc.ca	37	6	25811666	25811666	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.T1138C	p.L380L	CACCCAAGCAAAA	.	395	26	250	0	.	94	G	25811666	A	G	25811666	2	3	40	1	0	0	0	0	0	0	0	1	14416	69	3	2		2	SLC17A1	6	25811666	Silent	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	9666361	25811666	145303401	53	4886											
SLC17A1	6568	hgsc.bcm.edu;bcgsc.ca	37	6	25811734	25811734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.A1070G	p.Y357C	CTCAGGTAAGGCA	.	278	38	185	0	.	94	C	25811734	T	C	25811734	3	2	40	1	0	0	0	0	1	0	0	0	14416	1638	57	2	345	2	SLC17A1	6	25811734	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	68	25811734	145303333	54	4887											
DAAM2	23500	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39864686	39864686	+	Missense_Mutation	SNP	C	C	A	rs146966805	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DAAM2	NM_015345	exon20	c.C2440A	p.R814S	GGGCAGCGTGGGG	.	89	42	63	0	C|0.999;T|0.001	228	A	39864686	C	A	39864686	3	1	40	1	0	0	0	0	1	0	0	0	4216	768	27	1	2514	1	DAAM2	6	39864686	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	14052952	39864686	131250381	55	4888											
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44198616	44198616	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC29A1	NM_004955	exon8	c.C756T	p.L252L	GGACCTCATTAGC	.	94	53	75	0	.	154	T	44198616	C	T	44198616	2	4	40	1	0	0	0	0	0	0	0	1	14534	813	29	3		3	SLC29A1	6	44198616	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	4333930	44198616	126916451	56	4889											
LACE1	246269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108645051	108645051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LACE1	NM_145315	exon2	c.G162T	p.E54D	ATCCGAGAGCATG	.	83	71	70	0	.	90	T	108645051	G	T	108645051	3	4	40	1	0	0	0	0	1	0	0	0	8595	933	33	3	168	3	LACE1	6	108645051	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	64446435	108645051	62470016	57	4890											
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167549831	167549831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCR6	NM_004367	exon3	c.T113C	p.L38S	GCTCCTTGCAGGA	.	66	48	87	0	.	227	C	167549831	T	C	167549831	3	2	40	1	0	0	0	0	1	0	0	0	2945	1821	63	2	119	2	CCR6	6	167549831	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	58904780	167549831	3565236	58	4891											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484630	43484630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HECW1	NM_015052	exon11	c.C1859A	p.P620H	AAGAGCCCGAGGG	.	31	11	34	0	.	669	A	43484630	C	A	43484630	3	1	40	1	0	0	0	0	1	0	0	0	7042	623	22	3	1893	3	HECW1	7	43484630	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10		43484630	115654033	59	4892											
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82546021	82546021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon7	c.A11281C	p.K3761Q	GAATCTTGGCTCG	.	99	32	118	1	.	29	G	82546021	T	G	82546021	3	3	40	1	0	0	0	0	1	0	0	0	11583	1821	63	5	4240	5	PCLO	7	82546021	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	39061391	82546021	76592642	60	4893											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82583500	82583500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon5	c.G6769T	p.A2257S	CACTAGCTCTACC	.	48	16	56	0	.	29	A	82583500	C	A	82583500	3	1	40	1	0	0	0	0	1	0	0	0	11583	797	28	3	8760	3	PCLO	7	82583500	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	37479	82583500	76555163	61	4894											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764880	82764880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon3	c.G1986T	p.K662N	TGCAGTCTTCAGT	.	58	27	96	0	.	29	A	82764880	C	A	82764880	3	1	40	1	0	0	0	0	1	0	0	0	11583	912	32	3	13551	3	PCLO	7	82764880	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	181380	82764880	76373783	62	4895											
ASNS	440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97486092	97486092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ASNS	NM_133436	exon8	c.C940G	p.L314V	TAAAAAGGACTTC	.	302	87	309	1	.	91	C	97486092	G	C	97486092	3	2	40	1	0	0	0	0	1	0	0	0	1048	1000	35	4	769	4	ASNS	7	97486092	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	14721212	97486092	61652571	63	4896											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100361473	100361473	+	RNA	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZAN	.	.	.	.	ATTCATCTCTGCA	.	60	22	49	0	.	142	G	100361473	C	G	100361473	1	3	40	0	1	0	0	0	0	0	0	0	17510	913	32	4		4	ZAN	7	100361473	RNA	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	2875381	100361473	58777190	64	4897											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121652602	121652602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPRZ1	NM_002851	exon12	c.T3502A	p.L1168I	CAGCTCTTATTTT	.	45	18	102	0	.	699	A	121652602	T	A	121652602	3	1	40	1	0	0	0	0	1	0	0	0	12814	1606	56	4	3548	4	PTPRZ1	7	121652602	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	21291129	121652602	37486061	65	4898											
SSPO	23145	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149523554	149523554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_198455	exon102	c.A14465G	p.Q4822R	CTGGCCAGGTGCT	.	21	10	20	0	.	.	G	149523554	A	G	149523554	3	3	40	1	0	0	0	0	1	0	0	0	15188	188	7	2	14862	2	SSPO	7	149523554	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	27870952	149523554	9615109	66	4899											
NCAPG2	54892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158437057	158437057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NCAPG2	NM_017760	exon27	c.A3304G	p.R1102G	CCTCCCTCACTTT	.	60	12	72	0	.	272	C	158437057	T	C	158437057	3	2	40	1	0	0	0	0	1	0	0	0	10208	1550	54	2	135	2	NCAPG2	7	158437057	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	8913503	158437057	701606	67	4900											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3141773	3141773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CSMD1	NM_033225	exon26	c.G4046A	p.S1349N	GAGCCACTCCACT	.	38	23	140	0	.	86	T	3141773	C	T	3141773	3	4	40	1	0	0	0	0	1	0	0	0	3944	565	20	3	6828	3	CSMD1	8	3141773	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10		3141773	143222249	68	4901											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6302684	6302684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MCPH1	NM_001172574	exon8	c.A1441G	p.I481V	AAAACCATCTCCA	.	49	22	111	0	.	229	G	6302684	A	G	6302684	3	3	40	1	0	0	0	0	1	0	0	0	9398	217	8	2	1471	2	MCPH1	8	6302684	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	3160911	6302684	140061338	69	4902											
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68334896	68334896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CPA6	NM_020361	exon11	c.C1157A	p.A386D	TTGTAGGCCCAAT	.	165	21	121	0	.	92	T	68334896	G	T	68334896	3	4	40	1	0	0	0	0	1	0	0	0	3794	1203	42	3	160	3	CPA6	8	68334896	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	62032212	68334896	78029126	70	4903											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71087033	71087033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NCOA2	NM_006540	exon5	c.G321T	p.Q107H	GACACCCTGCCCT	.	99	23	63	0	.	639	A	71087033	C	A	71087033	3	1	40	1	0	0	0	0	1	0	0	0	10229	680	24	3	4149	3	NCOA2	8	71087033	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	2752137	71087033	75276989	71	4904											
CALB1	793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	91094853	91094853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CALB1	NM_004929	exon1	c.73delG	p.A25fs	CGTCAGCGTCGAA	.	156	62	84	0	.	91	-	91094853	C	-	91094853	7	5	40	1	0	1	0	1	0	0	0	0	2573	768	27	0	756	0	CALB1	8	91094853	Frame_Shift_Del	DEL	C	TCGA-CC-A7IG-01A-11D-A33K-10	20007820	91094853	55269169	72	4905											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133899348	133899348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TG	NM_003235	exon9	c.C1731A	p.F577L	AGAATTCCTTCTC	.	246	63	152	0	.	145	A	133899348	C	A	133899348	3	1	40	1	0	0	0	0	1	0	0	0	15810	854	30	3	1765	3	TG	8	133899348	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	42804495	133899348	12464674	73	4906											
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143623348	143623348	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	BAI1	NM_001702	exon27	c.C3753T	p.G1251G	CACGGGCACACTG	.	49	14	37	0	.	1129	T	143623348	C	T	143623348	2	4	40	1	0	0	0	0	0	0	0	1	1298	697	25	3		3	BAI1	8	143623348	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	9724000	143623348	2740674	74	4907											
RHPN1	114822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144462150	144462150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RHPN1	NM_052924	exon9	c.G1097A	p.G366D	GCGACGGCTCCCG	.	37	8	44	0	.	67	A	144462150	G	A	144462150	3	1	40	1	0	0	0	0	1	0	0	0	13350	1203	42	3	1131	3	RHPN1	8	144462150	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	838802	144462150	1901872	75	4908											
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72723140	72723140	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MAMDC2	NM_153267	exon3	c.T162C	p.Y54Y	CATTTATGTGGAT	.	56	29	45	0	.	91	C	72723140	T	C	72723140	2	2	40	1	0	0	0	0	0	0	0	1	9203	1471	51	2		2	MAMDC2	9	72723140	Silent	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10		72723140	68490291	76	4909											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73151774	73151774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TRPM3	NM_001007471	exon25	c.A4219G	p.M1407V	CATCCATAGCAGA	.	125	50	146	0	.	521	C	73151774	T	C	73151774	3	2	40	1	0	0	0	0	1	0	0	0	16584	1406	49	2	908	2	TRPM3	9	73151774	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	428634	73151774	68061657	77	4910											
ANKRD30A	91074	hgsc.bcm.edu;bcgsc.ca	37	10	37455583	37455583	+	Silent	SNP	G	G	T	rs75413857	bycluster;alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ANKRD30A	NM_052997	exon19	c.G1947T	p.A649A	GGCTGCGCATCAA	.	789	155	702	1	A|1.000;|0.000	161	T	37455583	G	T	37455583	2	4	40	1	0	0	0	0	0	0	0	1	658	1074	38	1		1	ANKRD30A	10	37455583	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		37455583	98079164	78	4911											
LRRC18	474354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50121829	50121829	+	Silent	SNP	G	G	A	rs144747704	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LRRC18	NM_001006939	exon1	c.C372T	p.R124R	CACAGCGCGGATG	.	93	30	83	1	G|0.999;A|0.001	92	A	50121829	G	A	50121829	2	1	40	1	0	0	0	0	0	0	0	1	8974	1074	38	1		1	LRRC18	10	50121829	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	12666246	50121829	85412918	79	4912											
HPS6	79803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103827340	103827340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HPS6	NM_024747	exon1	c.G2109T	p.E703D	AGCTGAGCTCCTG	.	44	22	33	0	.	90	T	103827340	G	T	103827340	3	4	40	1	0	0	0	0	1	0	0	0	7343	962	34	3	2111	3	HPS6	10	103827340	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	53705511	103827340	31707407	80	4913											
LOC653486	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	194445	194445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001097610	exon3	c.G283A	p.A95T	GACGGTGCCTAAG	.	58	21	73	0	.	.	A	194445	G	A	194445	3	1	40	1	0	0	0	0	1	0	0	0	8886	1319	46	3	293	3	LOC653486	11	194445	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		194445	134812071	81	4914											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	609135	609135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PHRF1	NM_020901	exon14	c.C3676G	p.H1226D	GAAGCACATGTCT	.	28	9	24	0	.	22	G	609135	C	G	609135	3	3	40	1	0	0	0	0	1	0	0	0	11861	478	17	4	3726	4	PHRF1	11	609135	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	414690	609135	134397381	82	4915											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1017131	1017131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MUC6	NM_005961	exon31	c.C5670A	p.H1890Q	GGCTGTGTGGGTG	.	126	21	139	0	.	23	T	1017131	G	T	1017131	3	4	40	1	0	0	0	0	1	0	0	0	9980	1368	48	3	1661	3	MUC6	11	1017131	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	407996	1017131	133989385	83	4916											
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6964783	6964783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF215	NM_013250	exon6	c.T623A	p.L208Q	CACATCTACTTTC	.	104	46	145	0	.	514	A	6964783	T	A	6964783	3	1	40	1	0	0	0	0	1	0	0	0	17768	1522	53	4	637	4	ZNF215	11	6964783	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	5947652	6964783	128041733	84	4917											
FAR1	84188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13750208	13750208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAR1	NM_032228	exon12	c.T1435C	p.W479R	CTCATCTGGCGCA	.	53	18	43	0	.	92	C	13750208	T	C	13750208	3	2	40	1	0	0	0	0	1	0	0	0	5674	1580	55	2	1477	2	FAR1	11	13750208	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	6785425	13750208	121256308	85	4918											
PTPN5	84867	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18754797	18754797	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPN5	NM_032781	exon11	c.C1203A	p.I401I	CTCCTCGATGTTG	.	32	16	48	0	.	229	T	18754797	G	T	18754797	2	4	40	1	0	0	0	0	0	0	0	1	12791	1048	37	1		1	PTPN5	11	18754797	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	5004589	18754797	116251719	86	4919											
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66259030	66259030	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DPP3	NM_130443	exon8	c.C864A	p.G288G	CCAGGGCTCCATC	.	53	22	47	0	.	46	A	66259030	C	A	66259030	2	1	40	1	0	0	0	0	0	0	0	1	4728	784	28	3		3	DPP3	11	66259030	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	47504233	66259030	68747486	87	4920											
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	69995875	69995875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ANO1	NM_018043	exon12	c.C1318T	p.L440F	TGGGACCTCACGG	.	108	50	136	0	.	47	T	69995875	C	T	69995875	3	4	40	1	0	0	0	0	1	0	0	0	695	681	24	3	1364	3	ANO1	11	69995875	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	3736845	69995875	65010641	88	4921											
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77692543	77692543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	INTS4	NM_033547	exon3	c.G326A	p.C109Y	ATAATGCAGTCTG	.	58	24	56	0	.	92	T	77692543	C	T	77692543	3	4	40	1	0	0	0	0	1	0	0	0	7780	710	25	3	2649	3	INTS4	11	77692543	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	7696668	77692543	57313973	89	4922											
C11orf82	220042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82644353	82644353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C11orf82	NM_145018	exon6	c.A1973G	p.N658S	ATATCAATAACAA	.	82	18	78	0	.	70	G	82644353	A	G	82644353	3	3	40	1	0	0	0	0	1	0	0	0	1665	101	4	2	1987	2	C11orf82	11	82644353	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	4951810	82644353	52362163	90	4923											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92577146	92577146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAT3	NM_001008781	exon18	c.G10613A	p.R3538H	ACATCCGCGTGCG	.	90	40	121	0	.	73	A	92577146	G	A	92577146	3	1	40	1	0	0	0	0	1	0	0	0	5691	1087	38	1	10683	1	FAT3	11	92577146	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	9932793	92577146	42429370	91	4924											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	94316706	94316706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PIWIL4	NM_152431	exon5	c.C606A	p.C202X	CGTGTGCATCCAG	.	110	46	138	0	.	91	A	94316706	C	A	94316706	4	1	40	1	0	0	0	0	0	1	0	0	11960	718	25	3	624	3	PIWIL4	11	94316706	Nonsense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	1739560	94316706	40689810	92	4925											
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810405	106810405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GUCY1A2	NM_000855	exon4	c.C987G	p.F329L	CAAGTGGAAAGGG	.	150	55	163	0	.	589	C	106810405	G	C	106810405	3	2	40	1	0	0	0	0	1	0	0	0	6893	1165	41	4	1231	4	GUCY1A2	11	106810405	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	12493699	106810405	28196111	93	4926											
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118980899	118980899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C2CD2L	NM_014807	exon2	c.A440G	p.E147G	AATCTGAGCATAC	.	75	35	103	0	.	68	G	118980899	A	G	118980899	3	3	40	1	0	0	0	0	1	0	0	0	2153	304	11	2	446	2	C2CD2L	11	118980899	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	12170494	118980899	16025617	94	4927											
C2CD2L	9854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118986773	118986773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C2CD2L	NM_014807	exon14	c.G1931T	p.G644V	GCAGCGGCACTAA	.	29	9	34	0	.	68	T	118986773	G	T	118986773	3	4	40	1	0	0	0	0	1	0	0	0	2153	1203	42	3	1985	3	C2CD2L	11	118986773	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	5874	118986773	16019743	95	4928											
PRB2	653247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11546698	11546698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRB2	NM_006248	exon3	c.G314T	p.G105V	TTGTCTCCTTGTG	.	121	56	129	0	.	22	A	11546698	C	A	11546698	3	1	40	1	0	0	0	0	1	0	0	0	12443	855	30	3	940	3	PRB2	12	11546698	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10		11546698	122305197	96	4929											
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51890828	51890828	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC4A8	NM_001039960	exon22	c.C3001G	p.L1001V	CGAGAGCTGAGCT	.	171	16	178	0	.	95	G	51890828	C	G	51890828	3	3	40	1	0	0	0	0	1	0	0	0	14659	796	28	4	3087	4	SLC4A8	12	51890828	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	40344130	51890828	81961067	97	4930											
CDK2	1017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56365394	56365394	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CDK2	NM_001798	exon7	c.C882G	p.P294P	AGTACCCCATCTT	.	91	31	116	0	.	1511	G	56365394	C	G	56365394	2	3	40	1	0	0	0	0	0	0	0	1	3136	610	22	4		4	CDK2	12	56365394	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	4474566	56365394	77486501	98	4931											
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63042384	63042384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PPM1H	NM_020700	exon10	c.G1430T	p.R477L	CGGGCACGCATCA	.	55	27	53	0	.	637	A	63042384	C	A	63042384	3	1	40	1	0	0	0	0	1	0	0	0	12341	536	19	1	118	1	PPM1H	12	63042384	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	6676990	63042384	70809511	99	4932											
TBX5	6910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	114823367	114823367	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TBX5	NM_000192	exon7	c.G669T	p.T223T	TAATTGCGTGATC	.	70	17	88	0	.	98	A	114823367	C	A	114823367	2	1	40	1	0	0	0	0	0	0	0	1	15658	755	27	1		1	TBX5	12	114823367	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	51780983	114823367	19028528	100	4933											
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123070262	123070262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KNTC1	NM_014708	exon37	c.A3614T	p.E1205V	TTCTTGAGTCACA	.	63	29	66	0	.	543	T	123070262	A	T	123070262	3	4	40	1	0	0	0	0	1	0	0	0	8428	304	11	4	3756	4	KNTC1	12	123070262	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	8246895	123070262	10781633	101	4934											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124354994	124354994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DNAH10	NM_207437	exon43	c.A7247T	p.Y2416F	CAGAGTATATTCA	.	64	15	65	0	.	95	T	124354994	A	T	124354994	3	4	40	1	0	0	0	0	1	0	0	0	4598	449	16	4	7417	4	DNAH10	12	124354994	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	1284732	124354994	9496901	102	4935											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262451	39262451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FREM2	NM_207361	exon1	c.G970A	p.A324T	TTCGTGGCCATGA	.	129	95	144	0	.	100	A	39262451	G	A	39262451	3	1	40	1	0	0	0	0	1	0	0	0	6045	1203	42	3	972	3	FREM2	13	39262451	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		39262451	75907427	103	4936											
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	43543304	43543304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EPSTI1	NM_001002264	exon3	c.A257T	p.Q86L	AGCTCCTGCTCCG	.	25	18	65	0	.	91	A	43543304	T	A	43543304	3	1	40	1	0	0	0	0	1	0	0	0	5198	1580	55	4	1019	4	EPSTI1	13	43543304	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	4280853	43543304	71626574	104	4937											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	49039196	49039228	+	In_Frame_Del	DEL	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RB1	NM_000321	exon22	c.2274_2306del	p.758_769del	TAACTCGGTCTTC	.	51	17	164	0	.	3784	-	49039228	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	-	49039196	7	5	40	1	0	1	0	1	0	0	0	0	13098	1103	39	0	2360	0	RB1	13	49039196	In_Frame_Del	DEL	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	TCGA-CC-A7IG-01A-11D-A33K-10	5495892	49039196	66130682	105	4938											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28377352	28377352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HERC2	NM_004667	exon81	c.C12464T	p.A4155V	GTCTGGGCATCTC	.	159	66	225	0	.	234	A	28377352	G	A	28377352	3	1	40	1	0	0	0	0	1	0	0	0	7058	1203	42	3	2092	3	HERC2	15	28377352	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		28377352	74154040	106	4939											
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	33954429	33954429	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR3	NM_001243996	exon35	c.C4698T	p.S1566S	CTACAGCGCGGTG	.	37	4	52	0	.	520	T	33954429	C	T	33954429	2	4	40	1	0	0	0	0	0	0	0	1	13770	767	27	1		1	RYR3	15	33954429	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	5577077	33954429	68576963	107	4940											
WDR76	79968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44158353	44158353	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	WDR76	NM_024908	exon13	c.G1644T	p.L548L	ATGGCTGACCAGG	.	94	39	87	0	.	90	T	44158353	G	T	44158353	2	4	40	1	0	0	0	0	0	0	0	1	17323	1277	45	3		3	WDR76	15	44158353	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	10203924	44158353	58373039	108	4941											
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79058475	79058475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ADAMTS7	NM_014272	exon19	c.C3778A	p.L1260M	TCCACAGCTCCGC	.	35	23	42	0	.	226	T	79058475	G	T	79058475	3	4	40	1	0	0	0	0	1	0	0	0	271	962	34	3	1306	3	ADAMTS7	15	79058475	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	34900122	79058475	23472917	109	4942											
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90190176	90190176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KIF7	NM_198525	exon7	c.C1673A	p.S558Y	ACAAAGGACCCGG	.	43	26	81	0	.	523	T	90190176	G	T	90190176	3	4	40	1	0	0	0	0	1	0	0	0	8309	1174	41	3	2410	3	KIF7	15	90190176	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	11131701	90190176	12341216	110	4943											
SERPINF2	5345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	1657772	1657772	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SERPINF2	NM_000934	exon10	c.T1420C	p.L474L	CCTGACTTAAAAC	.	46	35	37	0	.	226	C	1657772	T	C	1657772	2	2	40	1	0	0	0	0	0	0	0	1	14115	1606	56	2		2	SERPINF2	17	1657772	Silent	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10		1657772	79537438	111	4944											
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6511774	6511774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KIAA0753	NM_014804	exon10	c.C1723G	p.L575V	CCTTTAGCCATGC	.	65	48	79	0	.	90	C	6511774	G	C	6511774	3	2	40	1	0	0	0	0	1	0	0	0	8191	962	34	4	1220	4	KIAA0753	17	6511774	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	4854002	6511774	74683436	112	4945											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	7578188	7578188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	TP53,NS,carcinoma,+2	TP53	NM_000546	exon6	c.G661T	p.E221X	GCGGCTCATAGGG	.	89	64	103	0	.	70225	A	7578188	C	A	7578188	4	1	40	1	0	0	0	0	0	1	0	0	16378	835	29	3	633	3	TP53	17	7578188	Nonsense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	1066414	7578188	73617022	113	4946											
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17697493	17697493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RAI1	NM_030665	exon3	c.G1231T	p.A411S	ACCCAGGCTGGCA	.	58	36	105	0	.	91	T	17697493	G	T	17697493	3	4	40	1	0	0	0	0	1	0	0	0	13007	1203	42	3	1233	3	RAI1	17	17697493	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	10119305	17697493	63497717	114	4947											
RNF135	84282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29325932	29325932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RNF135	NM_032322	exon5	c.G1022T	p.G341V	TCCTGGGAAGGAC	.	147	70	108	0	.	227	T	29325932	G	T	29325932	3	4	40	1	0	0	0	0	1	0	0	0	13440	1174	41	3	1109	3	RNF135	17	29325932	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	11628439	29325932	51869278	115	4948											
ZNF830	91603	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	33288615	33288615	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF830	NM_052857	exon1	c.G30T	p.P10P	GACTCCGGCAGGG	.	121	53	85	1	.	89	T	33288615	G	T	33288615	2	4	40	1	0	0	0	0	0	0	0	1	18181	1103	39	1		1	ZNF830	17	33288615	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	3962683	33288615	47906595	116	4949											
MEOX1	4222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41738808	41738808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MEOX1	NM_004527	exon1	c.C95T	p.A32V	CCTGAGGCCCCAT	.	144	59	96	0	.	90	A	41738808	G	A	41738808	3	1	40	1	0	0	0	0	1	0	0	0	9473	1203	42	3	681	3	MEOX1	17	41738808	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	8450193	41738808	39456402	117	4950											
ITGA2B	3674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42453683	42453683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ITGA2B	NM_000419	exon23	c.C2341G	p.L781V	CTCGCAGCTCCAC	.	91	42	77	0	.	228	C	42453683	G	C	42453683	3	2	40	1	0	0	0	0	1	0	0	0	7876	962	34	4	810	4	ITGA2B	17	42453683	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	714875	42453683	38741527	118	4951											
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	43884410	43884410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CRHR1	NM_001145148	exon2	c.C68T	p.A23V	TCTCTGCCTCCCT	.	58	27	40	0	.	522	T	43884410	C	T	43884410	3	4	40	1	0	0	0	0	1	0	0	0	3871	739	26	3	74	3	CRHR1	17	43884410	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	1430727	43884410	37310800	119	4952											
MAP3K3	4215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61768464	61768464	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MAP3K3	NM_203351	exon14	c.G1308A	p.E436E	CTAGGAGGTGAGT	.	33	14	50	0	.	979	A	61768464	G	A	61768464	2	1	40	1	0	0	0	0	0	0	0	1	9251	991	35	3		3	MAP3K3	17	61768464	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	17884054	61768464	19426746	120	4953											
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77922702	77922702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TBC1D16	NM_019020	exon8	c.G1510T	p.G504W	CTTCCCCCCGGAA	.	105	16	70	0	.	90	A	77922702	C	A	77922702	3	1	40	1	0	0	0	0	1	0	0	0	15602	623	22	3	813	3	TBC1D16	17	77922702	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	16154238	77922702	3272508	121	4954											
UTS2R	2837	bcgsc.ca;mdanderson.org	37	17	80333246	80333246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UTS2R	NM_018949	exon1	c.C1046A	p.A349D	CCCGCGCCCGCTT	.	25	13	52	2	.	153	A	80333246	C	A	80333246	3	1	40	1	0	0	0	0	1	0	0	0	17103	739	26	3	1048	3	UTS2R	17	80333246	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	2410544	80333246	861964	122	4955											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21422647	21422647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LAMA3	NM_001127717	exon29	c.A3536T	p.E1179V	AGATTGAGTTTGA	.	183	75	132	0	.	100	T	21422647	A	T	21422647	3	4	40	1	0	0	0	0	1	0	0	0	8607	304	11	4	3650	4	LAMA3	18	21422647	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10		21422647	56654601	123	4956											
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	31523091	31523097	+	Frame_Shift_Del	DEL	CCAAGAT	CCAAGAT	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	CCAAGAT	CCAAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NOL4	NM_003787	exon9	c.1474_1480del	p.492_494del	CTGAAGCCAAGAT	.	115	0	108	0	.	93	-	31523097	CCAAGAT	-	31523091	7	5	40	1	0	1	0	1	0	0	0	0	10524	739	26	0	448	0	NOL4	18	31523091	Frame_Shift_Del	DEL	CCAAGAT	TCGA-CC-A7IG-01A-11D-A33K-10	10100444	31523091	46554157	124	4957											
SIGLEC15	284266	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	43418741	43418741	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SIGLEC15	NM_213602	exon4	c.G555T	p.A185A	CCGCGCGCTCTGC	.	14	7	13	0	.	90	T	43418741	G	T	43418741	2	4	40	1	0	0	0	0	0	0	0	1	14310	1074	38	1		1	SIGLEC15	18	43418741	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	11895650	43418741	34658507	125	4958											
C18orf25	147339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	43796312	43796312	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C18orf25	NM_145055	exon2	c.A466T	p.K156X	GCCAAGAAAAACC	.	141	57	129	0	.	515	T	43796312	A	T	43796312	4	4	40	1	0	0	0	0	0	1	0	0	1899	247	9	4	468	4	C18orf25	18	43796312	Nonsense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	377571	43796312	34280936	126	4959											
PTPRS	5802	broad.mit.edu;mdanderson.org	37	19	5223017	5223017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPRS	NM_002850	exon18	c.G2786A	p.R929H	TGGCCACGGGGCG	.	21	11	20	0	.	357	T	5223017	C	T	5223017	3	4	40	1	0	0	0	0	1	0	0	0	12811	536	19	1	3144	1	PTPRS	19	5223017	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10		5223017	53905966	127	4960											
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6147641	6147641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ACSBG2	NM_030924	exon3	c.C252G	p.N84K	TTTCAACCAGTAC	.	111	24	99	0	.	23	G	6147641	C	G	6147641	3	3	40	1	0	0	0	0	1	0	0	0	174	506	18	4	258	4	ACSBG2	19	6147641	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	924624	6147641	52981342	128	4961											
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11834023	11834023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF823	NM_001080493	exon4	c.G326C	p.G109A	GAATGACCCAAGA	.	103	21	107	0	.	24	G	11834023	C	G	11834023	3	3	40	1	0	0	0	0	1	0	0	0	18176	507	18	4	1510	4	ZNF823	19	11834023	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	5686382	11834023	47294960	129	4962											
IER2	9592	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13264628	13264628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	IER2	NM_004907	exon2	c.G628T	p.D210Y	CCGGCGGACAGCA	.	10	4	19	0	.	537	T	13264628	G	T	13264628	3	4	40	1	0	0	0	0	1	0	0	0	7505	1174	41	3	630	3	IER2	19	13264628	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	1430605	13264628	45864355	130	4963											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17942056	17942056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	JAK3	NM_000215	exon21	c.G2959A	p.G987S	TCTGGCCTGGCTC	.	50	25	61	0	.	2418	T	17942056	C	T	17942056	3	4	40	1	0	0	0	0	1	0	0	0	7939	681	24	3	431	3	JAK3	19	17942056	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	4677428	17942056	41186927	131	4964											
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21132144	21132144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF85	NM_001256171	exon5	c.C914A	p.T305N	TTACTACCCATAA	.	49	10	73	0	.	514	A	21132144	C	A	21132144	3	1	40	1	0	0	0	0	1	0	0	0	18190	507	18	3	838	3	ZNF85	19	21132144	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	3190088	21132144	37996839	132	4965											
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	22575415	22575415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF98	NM_001098626	exon4	c.A622G	p.K208E	AGGGTTTCTCTCC	.	307	152	305	0	.	24	C	22575415	T	C	22575415	3	2	40	1	0	0	0	0	1	0	0	0	18200	1792	62	2	1100	2	ZNF98	19	22575415	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	1443271	22575415	36553568	133	4966											
ZNF99	7652	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	22941607	22941607	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF99	NM_001080409	exon4	c.C1104T	p.P368P	TTTGTAGGGTTTC	.	35	10	45	1	.	24	A	22941607	G	A	22941607	2	1	40	1	0	0	0	0	0	0	0	1	18201	987	35	3		3	ZNF99	19	22941607	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	366192	22941607	36187376	134	4967											
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35624619	35624619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LGI4	NM_139284	exon3	c.G292T	p.G98C	ACAGGCCCGCAAA	.	58	28	39	0	.	91	A	35624619	C	A	35624619	3	1	40	1	0	0	0	0	1	0	0	0	8754	623	22	3	1349	3	LGI4	19	35624619	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	12683012	35624619	23504364	135	4968											
PRODH2	58510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36297613	36297613	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRODH2	NM_021232	exon7	c.G1026T	p.G342G	CCAGGGCCCGCCT	.	51	27	56	0	.	92	A	36297613	C	A	36297613	2	1	40	1	0	0	0	0	0	0	0	1	12549	726	26	3		3	PRODH2	19	36297613	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	672994	36297613	22831370	136	4969											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39001379	39001379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR1	NM_001042723	exon60	c.G9080T	p.S3027I	TGGGCAGCGGTGG	.	91	41	94	0	.	100	T	39001379	G	T	39001379	3	4	40	1	0	0	0	0	1	0	0	0	13768	971	34	3	9318	3	RYR1	19	39001379	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	2703766	39001379	20127604	137	4970	32	2									
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	39001380	39001380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR1	NM_001042723	exon60	c.C9081A	p.S3027R	GGGCAGCGGTGGC	.	91	42	95	0	.	100	A	39001380	C	A	39001380	3	1	40	1	0	0	0	0	1	0	0	0	13768	767	27	1	9319	1	RYR1	19	39001380	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	1	39001380	20127603	138	4971	32	2									
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969693	43969693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LYPD3	NM_014400	exon1	c.G31T	p.A11S	TCATGGCCTGGGC	.	37	15	41	1	.	91	A	43969693	C	A	43969693	3	1	40	1	0	0	0	0	1	0	0	0	9111	739	26	3	1029	3	LYPD3	19	43969693	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	4968313	43969693	15159290	139	4972											
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55396884	55396884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FCAR	NM_133279	exon3	c.G308A	p.R103K	AATATAGGATAGG	.	86	31	83	0	.	92	A	55396884	G	A	55396884	3	1	40	1	0	0	0	0	1	0	0	0	5773	1000	35	3	318	3	FCAR	19	55396884	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	11427191	55396884	3732099	140	4973											
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58574854	58574854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF135	NM_007134	exon3	c.G237T	p.E79D	GCTGGAGCAAGAG	.	112	51	100	0	.	91	T	58574854	G	T	58574854	3	4	40	1	0	0	0	0	1	0	0	0	17722	962	34	3	284	3	ZNF135	19	58574854	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	3177970	58574854	554129	141	4974											
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17240976	17240976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCSK2	NM_002594	exon2	c.A269G	p.E90G	AGCTGGAGAGAGA	.	107	59	121	0	.	157	G	17240976	A	G	17240976	3	3	40	1	0	0	0	0	1	0	0	0	11601	304	11	2	275	2	PCSK2	20	17240976	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10		17240976	45784544	142	4975											
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23546707	23546707	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CST9L	NM_080610	exon2	c.A258G	p.V86V	TGAGAATACAGTC	.	83	38	123	0	.	90	C	23546707	T	C	23546707	2	2	40	1	0	0	0	0	0	0	0	1	3980	1393	49	2		2	CST9L	20	23546707	Silent	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	6305731	23546707	39478813	143	4976											
TTLL9	164395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	30522615	30522615	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TTLL9	NM_001008409	exon12	c.C928T	p.Q310X	AGTGTGCAGAAGG	.	97	24	104	0	.	92	T	30522615	C	T	30522615	4	4	40	1	0	0	0	0	0	1	0	0	16731	711	25	3	970	3	TTLL9	20	30522615	Nonsense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	6975908	30522615	32502905	144	4977											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56140768	56140769	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCK1	NM_002591	exon10	c.1777_1778del	p.593_593del	GACATCGAGAAGT	.	144	0	151	0	.	227	-	56140769	GA	-	56140768	7	5	40	1	0	1	0	1	0	0	0	0	11581	1059	37	0	1811	0	PCK1	20	56140768	Frame_Shift_Del	DEL	GA	TCGA-CC-A7IG-01A-11D-A33K-10	25618153	56140768	6884752	145	4978											
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57428698	57428698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GNAS	NM_001077490	exon1	c.G191T	p.G64V	CAGTGGGGTCCAT	.	46	27	61	0	.	4767	T	57428698	G	T	57428698	3	4	40	1	0	0	0	0	1	0	0	0	6510	1232	43	3	1122	3	GNAS	20	57428698	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	1287930	57428698	5596822	146	4979											
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19687499	19687499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TMPRSS15	NM_002772	exon17	c.C1996G	p.L666V	AGTGCAGATGACC	.	87	38	79	0	.	160	C	19687499	G	C	19687499	3	2	40	1	0	0	0	0	1	0	0	0	16243	933	33	4	1099	4	TMPRSS15	21	19687499	Missense_Mutation	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		19687499	28442396	147	4980											
TRAPPC10	7109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45504036	45504036	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TRAPPC10	NM_003274	exon15	c.C2272T	p.L758L	AGGCAGCTGTGCG	.	68	20	45	0	.	92	T	45504036	C	T	45504036	2	4	40	1	0	0	0	0	0	0	0	1	16454	796	28	3		3	TRAPPC10	21	45504036	Silent	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	25816537	45504036	2625859	148	4981											
SLC2A11	66035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24224833	24224833	+	Silent	SNP	G	G	T	rs199527068	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC2A11	NM_030807	exon8	c.G894T	p.S298S	TGACTCGGTGAGA	.	47	27	32	1	G|0.999;A|0.000	91	T	24224833	G	T	24224833	2	4	40	1	0	0	0	0	0	0	0	1	14540	1130	39	1		1	SLC2A11	22	24224833	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10		24224833	27079733	149	4982											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26164107	26164107	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYO18B	NM_032608	exon4	c.C224G	p.P75R	GCCAACCCAACAG	.	266	71	266	0	.	142	G	26164107	C	G	26164107	3	3	40	1	0	0	0	0	1	0	0	0	10066	623	22	4	234	4	MYO18B	22	26164107	Missense_Mutation	SNP	C	TCGA-CC-A7IG-01A-11D-A33K-10	1939274	26164107	25140459	150	4983											
KREMEN1	83999	broad.mit.edu;bcgsc.ca	37	22	29490382	29490382	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KREMEN1	NM_001039570	exon2	c.G234C	p.G78G	GGAGGGGGGCCTG	.	121	8	98	0	.	659	C	29490382	G	C	29490382	2	2	40	1	0	0	0	0	0	0	0	1	8442	1219	43	4		4	KREMEN1	22	29490382	Silent	SNP	G	TCGA-CC-A7IG-01A-11D-A33K-10	3326275	29490382	21814184	151	4984											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	46930838	46930838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CELSR1	NM_014246	exon1	c.A2230G	p.I744V	GGGTGATGAGGCC	.	37	12	39	0	.	525	C	46930838	T	C	46930838	3	2	40	1	0	0	0	0	1	0	0	0	3221	1464	51	2	6954	2	CELSR1	22	46930838	Missense_Mutation	SNP	T	TCGA-CC-A7IG-01A-11D-A33K-10	17440456	46930838	4373728	152	4985											
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47065468	47065468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UBA1	NM_153280	exon15	c.A1697G	p.Q566R	TTTTCCAAAACCT	.	103	72	121	0	.	227	G	47065468	A	G	47065468	3	3	40	1	0	0	0	0	1	0	0	0	16824	130	5	2	1751	2	UBA1	23	47065468	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10		47065468	108205092	153	4986											
XPNPEP2	7512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128893170	128893170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	XPNPEP2	NM_003399	exon15	c.A1382T	p.D461V	CCACAGACATCAC	.	59	51	65	1	.	130	T	128893170	A	T	128893170	3	4	40	1	0	0	0	0	1	0	0	0	17440	275	10	4	1440	4	XPNPEP2	23	128893170	Missense_Mutation	SNP	A	TCGA-CC-A7IG-01A-11D-A33K-10	81827702	128893170	26377390	154	4987											
SCNN1D	6339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1222886	1222886	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCNN1D	NM_001130413	exon10	c.1311-2A>T	.	CATTCCAGACAGT	.	71	24	114	0	.	90	T	1222886	A	T	1222886	5	4	41	1	0	0	0	0	0	0	1	0	13929	202	7	4	1041	4	SCNN1D	1	1222886	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10		1222886	248027735	1	4988											
KIF1B	23095	broad.mit.edu;ucsc.edu	37	1	10363425	10363425	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF1B	NM_183416	exon21	c.A2182T	p.K728X	GATTCCAAGTGGG	.	334	141	381	2	.	93	T	10363425	A	T	10363425	4	4	41	1	0	0	0	0	0	1	0	0	8284	131	5	4	2260	4	KIF1B	1	10363425	Nonsense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	9140539	10363425	238887196	2	4989											
EXOSC10	5394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11141273	11141273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EXOSC10	NM_002685	exon11	c.A1303T	p.S435C	CGTAGCTGAGCAT	.	128	55	161	0	.	116	A	11141273	T	A	11141273	3	1	41	1	0	0	0	0	1	0	0	0	5314	1580	55	4	1414	4	EXOSC10	1	11141273	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	777848	11141273	238109348	3	4990											
PRAMEF12	390999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12837669	12837669	+	Missense_Mutation	SNP	G	G	A	rs201008398	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRAMEF12	NM_001080830	exon3	c.G1379A	p.G460D	GCTGTGGCATCAG	.	275	125	291	0	G|0.993;T|0.007	25	A	12837669	G	A	12837669	3	1	41	1	0	0	0	0	1	0	0	0	12428	1203	42	3	1389	3	PRAMEF12	1	12837669	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1696396	12837669	236412952	4	4991											
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16459692	16459692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA2	NM_004431	exon11	c.A2036T	p.E679V	ACGCCCTCTAGGC	.	47	25	52	0	.	1419	A	16459692	T	A	16459692	3	1	41	1	0	0	0	0	1	0	0	0	5167	1551	54	4	922	4	EPHA2	1	16459692	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3622023	16459692	232790929	5	4992											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19433356	19433356	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UBR4	NM_020765	exon82	c.C12210T	p.A4070A	CTTCCAGGCATCA	.	184	83	255	0	.	612	A	19433356	G	A	19433356	2	1	41	1	0	0	0	0	0	0	0	1	16901	987	35	3		3	UBR4	1	19433356	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2973664	19433356	229817265	6	4993											
CAMK2N1	55450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20811760	20811760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAMK2N1	NM_018584	exon1	c.C113G	p.A38G	TGCCCGGCGCCGA	.	46	17	47	0	.	93	C	20811760	G	C	20811760	3	2	41	1	0	0	0	0	1	0	0	0	2603	1203	42	4	131	4	CAMK2N1	1	20811760	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1378404	20811760	228438861	7	4994											
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21940198	21940198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAP1GAP	NM_001145658	exon9	c.A589T	p.T197S	ACTTGGTCCTGAG	.	36	18	54	0	.	245	A	21940198	T	A	21940198	3	1	41	1	0	0	0	0	1	0	0	0	13037	1681	58	4	1740	4	RAP1GAP	1	21940198	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1128438	21940198	227310423	8	4995											
WNT4	54361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22446623	22446623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WNT4	NM_030761	exon5	c.T976C	p.C326R	AGCTGCAGCGTTC	.	33	15	57	0	.	524	G	22446623	A	G	22446623	3	3	41	1	0	0	0	0	1	0	0	0	17387	188	7	2	83	2	WNT4	1	22446623	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	506425	22446623	226803998	9	4996											
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26694278	26694278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_173574	exon3	c.C125G	p.A42G	CTGCAGGCTGAGA	.	75	36	107	0	.	.	C	26694278	G	C	26694278	3	2	41	1	0	0	0	0	1	0	0	0	18087	1203	42	4	1405	4	ZNF683	1	26694278	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4247655	26694278	222556343	10	4997											
NUDC	10726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27268120	27268120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUDC	NM_006600	exon3	c.A332G	p.E111G	ATGAAGAGGCAGA	.	175	15	200	0	.	91	G	27268120	A	G	27268120	3	3	41	1	0	0	0	0	1	0	0	0	10721	304	11	2	342	2	NUDC	1	27268120	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	573842	27268120	221982501	11	4998											
LAPTM5	7805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31215394	31215394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAPTM5	NM_006762	exon2	c.C90G	p.I30M	GCTCATGATCTGG	.	59	27	102	0	.	226	C	31215394	G	C	31215394	3	2	41	1	0	0	0	0	1	0	0	0	8626	1280	45	4	726	4	LAPTM5	1	31215394	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3947274	31215394	218035227	12	4999											
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32101091	32101091	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PEF1	NM_012392	exon2	c.A57T	p.G19G	AGGGGCTCCTGGT	.	270	105	308	0	.	68	A	32101091	T	A	32101091	2	1	41	1	0	0	0	0	0	0	0	1	11718	1538	54	4		4	PEF1	1	32101091	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	885697	32101091	217149530	13	5000											
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34174805	34174805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD2	NM_052896	exon22	c.T3340C	p.F1114L	CAGGAAAGTTGGG	.	97	34	152	1	.	103	G	34174805	A	G	34174805	3	3	41	1	0	0	0	0	1	0	0	0	3945	72	3	2	7315	2	CSMD2	1	34174805	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2073714	34174805	215075816	14	5001											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34663030	34663030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf94	NM_001134734	exon2	c.A525T	p.R175S	CCCCAGAGCCTCC	.	104	46	88	0	.	90	T	34663030	A	T	34663030	3	4	41	1	0	0	0	0	1	0	0	0	2071	301	11	4	531	4	C1orf94	1	34663030	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	488225	34663030	214587591	15	5002											
GRIK3	2899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37315910	37315910	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIK3	NM_000831	exon10	c.1326+2T>C	.	GCTCTTACCAGCA	.	45	16	53	0	.	158	G	37315910	A	G	37315910	5	3	41	1	0	0	0	0	0	0	1	0	6775	405	14	2	1463	2	GRIK3	1	37315910	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2652880	37315910	211934711	16	5003											
KLF17	128209	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44595431	44595431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLF17	NM_173484	exon2	c.C488T	p.S163F	CGGCTTCCACTGG	.	91	29	86	1	.	92	T	44595431	C	T	44595431	3	4	41	1	0	0	0	0	1	0	0	0	8345	855	30	3	494	3	KLF17	1	44595431	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	7279521	44595431	204655190	17	5004											
NSUN4	387338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46810731	46810732	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NSUN4	NM_199044	exon2	c.352_353insT	p.P118fs	GCAGCCCCATCCC	.	82	34	74	0	.	90	T	46810732	-	T	46810731	7	5	41	1	0	1	1	0	0	0	0	0	10680	623	22	0	358	0	NSUN4	1	46810731	Frame_Shift_Ins	INS	-	TCGA-CC-A7IH-01A-11D-A33K-10	2215300	46810731	202439890	18	5005											
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52761649	52761649	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFYVE9	NM_004799	exon12	c.A3333G	p.A1111A	TCTTGCAGTAAGT	.	102	43	115	0	.	230	G	52761649	A	G	52761649	2	3	41	1	0	0	0	0	0	0	0	1	17668	202	7	2		2	ZFYVE9	1	52761649	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5950918	52761649	196488972	19	5006											
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64515633	64515633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROR1	NM_001083592	exon3	c.T434C	p.V145A	CTGGAGTCTTGTT	.	75	26	97	0	.	1536	C	64515633	T	C	64515633	3	2	41	1	0	0	0	0	1	0	0	0	13526	1667	58	2	444	2	ROR1	1	64515633	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	11753984	64515633	184734988	20	5007											
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74621535	74621535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRIQ3	NM_001105659	exon4	c.G589A	p.E197K	TTTCCTCTTCATA	.	347	135	327	0	.	92	T	74621535	C	T	74621535	3	4	41	1	0	0	0	0	1	0	0	0	9030	922	32	3	1305	3	LRRIQ3	1	74621535	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	10105902	74621535	174629086	21	5008											
C1orf173	127254	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75039093	75039093	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf173	NM_001002912	exon14	c.T2301C	p.Y767Y	CAGTGTATACGTT	.	102	43	130	1	.	94	G	75039093	A	G	75039093	2	3	41	1	0	0	0	0	0	0	0	1	2014	456	16	2		2	C1orf173	1	75039093	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	417558	75039093	174211528	22	5009											
GBP6	163351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89848365	89848365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GBP6	NM_198460	exon8	c.A1295G	p.H432R	GAGGGCACAAGCT	.	169	54	200	0	.	92	G	89848365	A	G	89848365	3	3	41	1	0	0	0	0	1	0	0	0	6278	159	6	2	1321	2	GBP6	1	89848365	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	14809272	89848365	159402256	23	5010											
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92428482	92428482	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRDT	NM_001242806	exon2	c.T171C	p.D57D	TGTGGATGCTGTG	.	128	46	124	0	.	374	C	92428482	T	C	92428482	2	2	41	1	0	0	0	0	0	0	0	1	1508	1461	51	2		2	BRDT	1	92428482	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2580117	92428482	156822139	24	5011											
EPHX4	253152	broad.mit.edu;bcgsc.ca	37	1	92495733	92495733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHX4	NM_173567	exon1	c.T97C	p.S33P	TGCGCCTCCATCC	.	102	36	93	2	.	90	C	92495733	T	C	92495733	3	2	41	1	0	0	0	0	1	0	0	0	5182	1551	54	2	99	2	EPHX4	1	92495733	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	67251	92495733	156754888	25	5012	33	2									
EPHX4	253152	broad.mit.edu;bcgsc.ca	37	1	92495735	92495735	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHX4	NM_173567	exon1	c.C99A	p.S33S	CGCCTCCATCCAC	.	103	36	90	1	.	90	A	92495735	C	A	92495735	2	1	41	1	0	0	0	0	0	0	0	1	5182	581	21	3		3	EPHX4	1	92495735	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2	92495735	156754886	26	5013	33	2									
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94568641	94568641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA4	NM_000350	exon5	c.T500G	p.L167R	TTAATGAGAAATA	.	97	33	113	0	.	162	C	94568641	A	C	94568641	3	2	41	1	0	0	0	0	1	0	0	0	34	304	11	5	6505	5	ABCA4	1	94568641	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2072906	94568641	154681980	27	5014											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103453234	103453234	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL11A1	NM_080629	exon30	c.A2493T	p.A831A	TGGGCCTGCTCGA	.	91	35	113	0	.	586	A	103453234	T	A	103453234	2	1	41	1	0	0	0	0	0	0	0	1	3667	1567	55	4		4	COL11A1	1	103453234	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8884593	103453234	145797387	28	5015											
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109525342	109525342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR47	NM_001142550	exon12	c.G2179A	p.G727S	CTGGGCCTTCCAT	.	138	61	133	0	.	91	T	109525342	C	T	109525342	3	4	41	1	0	0	0	0	1	0	0	0	17297	681	24	3	620	3	WDR47	1	109525342	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	6072108	109525342	139725279	29	5016											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109801366	109801366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CELSR2	NM_001408	exon2	c.G3623C	p.R1208P	AGGAGCGCCTATA	.	57	25	74	0	.	526	C	109801366	G	C	109801366	3	2	41	1	0	0	0	0	1	0	0	0	3222	1087	38	4	3629	4	CELSR2	1	109801366	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	276024	109801366	139449255	30	5017											
SORT1	6272	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109910100	109910100	+	Missense_Mutation	SNP	T	T	C	rs61797119	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SORT1	NM_002959	exon3	c.A370G	p.I124V	CTAGAATGACCTG	.	58	24	65	0	T|0.995;C|0.005	91	C	109910100	T	C	109910100	3	2	41	1	0	0	0	0	1	0	0	0	14935	1464	51	2	2197	2	SORT1	1	109910100	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	108734	109910100	139340521	31	5018											
UBL4B	164153	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	110655547	110655547	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UBL4B	NM_203412	exon1	c.G391T	p.E131X	CACCTGGAGCAGC	.	98	37	117	1	.	69	T	110655547	G	T	110655547	4	4	41	1	0	0	0	0	0	1	0	0	16885	1175	41	3	393	3	UBL4B	1	110655547	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	745447	110655547	138595074	32	5019											
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111146974	111146974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNA2	NM_001204269	exon3	c.A431T	p.E144V	TGAAACTCATTTT	.	95	45	82	0	.	91	A	111146974	T	A	111146974	3	1	41	1	0	0	0	0	1	0	0	0	8003	1551	54	4	1072	4	KCNA2	1	111146974	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	491427	111146974	138103647	33	5020											
KCNA3	3738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111216207	111216207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNA3	NM_002232	exon1	c.G1225T	p.V409F	GGATGACCCCAAT	.	70	28	92	0	.	95	A	111216207	C	A	111216207	3	1	41	1	0	0	0	0	1	0	0	0	8004	507	18	3	506	3	KCNA3	1	111216207	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	69233	111216207	138034414	34	5021											
CD101	9398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117556093	117556093	+	Missense_Mutation	SNP	G	G	T	rs201304832	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD101	NM_001256109	exon4	c.G907T	p.V303F	GAACTGGTTTGCC	.	108	42	136	0	G|0.999;A|0.001	94	T	117556093	G	T	117556093	3	4	41	1	0	0	0	0	1	0	0	0	2962	1261	44	3	921	3	CD101	1	117556093	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	6339886	117556093	131694528	35	5022											
GPR89B	51463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147408746	147408746	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR89B	NM_016334	exon2	c.A48T	p.L16L	GATACTATTTTTT	.	383	87	249	0	.	158	T	147408746	A	T	147408746	2	4	41	1	0	0	0	0	0	0	0	1	6719	436	16	4		4	GPR89B	1	147408746	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	29852653	147408746	101841875	36	5023											
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	149902441	149902441	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MTMR11	NM_181873	exon15	c.1249-2A>G	.	TTTAACTGGACAG	.	76	11	35	0	.	90	C	149902441	T	C	149902441	5	2	41	1	0	0	0	0	0	0	1	0	9940	1594	55	2	717	2	MTMR11	1	149902441	Splice_Site	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2493695	149902441	99348180	37	5024											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151262629	151262630	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF687	NM_020832	exon7	c.2996_2997insG	p.E999fs	TGTGTGAGCGCTC	.	164	30	114	0	.	92	G	151262630	-	G	151262629	7	5	41	1	0	1	1	0	0	0	0	0	18089	304	11	0	3018	0	ZNF687	1	151262629	Frame_Shift_Ins	INS	-	TCGA-CC-A7IH-01A-11D-A33K-10	1360188	151262629	97987992	38	5025											
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152081242	152081242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCHH	NM_007113	exon3	c.A4451G	p.D1484G	TTTCTGTCACGCT	.	246	49	147	0	.	72	C	152081242	T	C	152081242	3	2	41	1	0	0	0	0	1	0	0	0	15697	1667	58	2	1384	2	TCHH	1	152081242	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	818613	152081242	97169379	39	5026											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152280562	152280562	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG	NM_002016	exon3	c.A6800T	p.H2267L	CCATGATGGTTTC	.	367	71	245	0	.	106	A	152280562	T	A	152280562	3	1	41	1	0	0	0	0	1	0	0	0	5922	1464	51	4	5389	4	FLG	1	152280562	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	199320	152280562	96970059	40	5027											
FLG2	388698	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152328113	152328113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG2	NM_001014342	exon3	c.T2149C	p.S717P	ATCCAGATGTCTG	.	290	55	160	2	.	151	G	152328113	A	G	152328113	3	3	41	1	0	0	0	0	1	0	0	0	5923	333	12	2	5030	2	FLG2	1	152328113	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	47551	152328113	96922508	41	5028											
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152329823	152329823	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG2	NM_001014342	exon3	c.T439A	p.S147T	CCCTTGAGTGCCC	.	388	272	266	0	.	151	T	152329823	A	T	152329823	3	4	41	1	0	0	0	0	1	0	0	0	5923	304	11	4	6740	4	FLG2	1	152329823	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1710	152329823	96920798	42	5029											
IVL	3713	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883220	152883220	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IVL	NM_005547	exon2	c.T947A	p.L316Q	AGCACCTGGAGCA	.	313	140	211	2	.	93	A	152883220	T	A	152883220	3	1	41	1	0	0	0	0	1	0	0	0	7929	1580	55	4	949	4	IVL	1	152883220	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	553397	152883220	96367401	43	5030											
TMEM79	84283	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255759	156255759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM79	NM_032323	exon2	c.T742A	p.F248I	GCCACCTTCCCCA	.	143	95	83	1	.	90	A	156255759	T	A	156255759	3	1	41	1	0	0	0	0	1	0	0	0	16200	1609	56	4	744	4	TMEM79	1	156255759	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3372539	156255759	92994862	44	5031											
NES	10763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156641502	156641502	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NES	NM_006617	exon4	c.A2478T	p.L826L	TGATTCTAGGATC	.	194	126	130	1	.	520	A	156641502	T	A	156641502	2	1	41	1	0	0	0	0	0	0	0	1	10337	1509	53	4		4	NES	1	156641502	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	385743	156641502	92609119	45	5032											
INSRR	3645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156816454	156816454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	INSRR	NM_014215	exon8	c.A1667T	p.Q556L	GGCTCCTGGGTGC	.	223	40	152	1	.	1403	A	156816454	T	A	156816454	3	1	41	1	0	0	0	0	1	0	0	0	7774	1580	55	4	2285	4	INSRR	1	156816454	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	174952	156816454	92434167	46	5033											
OR10Z1	128368	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158577013	158577013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR10Z1	NM_001004478	exon1	c.C785A	p.P262H	TGAGGCCCAAAGC	.	231	45	125	2	.	70	A	158577013	C	A	158577013	3	1	41	1	0	0	0	0	1	0	0	0	10923	623	22	3	787	3	OR10Z1	1	158577013	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1760559	158577013	90673608	47	5034											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158632708	158632708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTA1	NM_003126	exon17	c.G2248C	p.A750P	ATGCAGCCAGGTC	.	209	10	148	0	.	142	G	158632708	C	G	158632708	3	3	41	1	0	0	0	0	1	0	0	0	15115	739	26	4	5155	4	SPTA1	1	158632708	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	55695	158632708	90617913	48	5035											
OR6K2	81448	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669520	158669520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6K2	NM_001005279	exon1	c.A923G	p.Q308R	TTAGCTTGACCTA	.	437	84	229	1	.	69	C	158669520	T	C	158669520	3	2	41	1	0	0	0	0	1	0	0	0	11202	1812	63	2	55	2	OR6K2	1	158669520	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	36812	158669520	90581101	49	5036											
DARC	2532	broad.mit.edu;bcgsc.ca	37	1	159176132	159176132	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DARC	NM_001122951	exon1	c.C909G	p.P303P	TACGCCCCTGCTC	.	147	101	96	2	.	659	G	159176132	C	G	159176132	2	3	41	1	0	0	0	0	0	0	0	1	4240	610	22	4		4	DARC	1	159176132	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	506612	159176132	90074489	50	5037											
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159176146	159176146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DARC	NM_001122951	exon1	c.T923C	p.L308P	TCGCCCTATTCTG	.	160	37	104	0	.	659	C	159176146	T	C	159176146	3	2	41	1	0	0	0	0	1	0	0	0	4240	1522	53	2	950	2	DARC	1	159176146	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	14	159176146	90074475	51	5038											
FCRL6	343413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159779343	159779343	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FCRL6	NM_001004310	exon5	c.A756G	p.S252S	CCACTCAGCTCCC	.	144	99	100	1	.	93	G	159779343	A	G	159779343	2	3	41	1	0	0	0	0	0	0	0	1	5799	175	7	2		2	FCRL6	1	159779343	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	603197	159779343	89471278	52	5039											
NCSTN	23385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160314603	160314606	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NCSTN	NM_015331	exon2	c.177_180del	p.59_60del	TCATCAGATTGGC	.	183	116	124	0	.	658	-	160314606	GATT	-	160314603	7	5	41	1	0	1	0	1	0	0	0	0	10241	933	33	0	183	0	NCSTN	1	160314603	Frame_Shift_Del	DEL	GATT	TCGA-CC-A7IH-01A-11D-A33K-10	535260	160314603	88936018	53	5040											
LY9	4063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160784465	160784465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LY9	NM_001261457	exon4	c.T986C	p.I329T	TGAAGATAGAGGA	.	265	163	164	1	.	91	C	160784465	T	C	160784465	3	2	41	1	0	0	0	0	1	0	0	0	9101	1406	49	2	1132	2	LY9	1	160784465	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	469862	160784465	88466156	54	5041											
FCGR2A	2212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161479767	161479767	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FCGR2A	NM_001136219	exon4	c.C522T	p.I174I	CTCCATCCCACAA	.	1276	240	853	1	.	91	T	161479767	C	T	161479767	2	4	41	1	0	0	0	0	0	0	0	1	5781	845	30	3		3	FCGR2A	1	161479767	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	695302	161479767	87770854	55	5042											
MAEL	84944	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	166974609	166974609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAEL	NM_032858	exon8	c.A820C	p.M274L	GTGGCCATGTGGG	.	407	20	249	1	.	91	C	166974609	A	C	166974609	3	2	41	1	0	0	0	0	1	0	0	0	9154	217	8	5	850	5	MAEL	1	166974609	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5494842	166974609	82276012	56	5043											
METTL13	51603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171753199	171753199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	METTL13	NM_015935	exon2	c.G473T	p.C158F	ATCTCTGCATCTC	.	190	49	112	0	.	91	T	171753199	G	T	171753199	3	4	41	1	0	0	0	0	1	0	0	0	9497	1319	46	3	479	3	METTL13	1	171753199	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4778590	171753199	77497422	57	5044											
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173842760	173842760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBTB37	NM_032522	exon4	c.A1079T	p.Y360F	CTGTGTATGAATA	.	234	38	130	0	.	90	T	173842760	A	T	173842760	3	4	41	1	0	0	0	0	1	0	0	0	17535	449	16	4	1085	4	ZBTB37	1	173842760	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2089561	173842760	75407861	58	5045											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176927577	176927577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASTN1	NM_004319	exon10	c.G1640A	p.S547N	CTCTTGCTGAGGG	.	278	72	206	0	.	319	T	176927577	C	T	176927577	3	4	41	1	0	0	0	0	1	0	0	0	1064	797	28	3	2304	3	ASTN1	1	176927577	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3084817	176927577	72323044	59	5046											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245534	177245534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM5B	NM_021165	exon6	c.T976C	p.S326P	CAGGACTCCTGGG	.	691	69	495	0	.	28	C	177245534	T	C	177245534	3	2	41	1	0	0	0	0	1	0	0	0	5593	1551	54	2	994	2	FAM5B	1	177245534	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	317957	177245534	72005087	60	5047											
FAM163A	148753	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	179783192	179783192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM163A	NM_173509	exon5	c.T372G	p.F124L	CTCCTTTGCTCCC	.	356	37	229	0	.	91	G	179783192	T	G	179783192	3	3	41	1	0	0	0	0	1	0	0	0	5476	1809	63	5	378	5	FAM163A	1	179783192	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2537658	179783192	69467429	61	5048											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181753861	181753861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA1E	NM_001205293	exon41	c.C5535A	p.H1845Q	GCCTCACCTATCC	.	202	42	152	0	.	95	A	181753861	C	A	181753861	3	1	41	1	0	0	0	0	1	0	0	0	2542	506	18	3	5697	3	CACNA1E	1	181753861	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1970669	181753861	67496760	62	5049											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182836133	182836133	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DHX9	NM_001357	exon14	c.A1512T	p.G504G	TCGAGGAATCAGT	.	167	35	117	0	.	92	T	182836133	A	T	182836133	2	4	41	1	0	0	0	0	0	0	0	1	4516	233	9	4		4	DHX9	1	182836133	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1082272	182836133	66414488	63	5050											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190067337	190067337	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM5C	NM_199051	exon8	c.A2112T	p.L704L	GATCTCTAGTAGT	.	303	67	147	0	.	228	A	190067337	T	A	190067337	2	1	41	1	0	0	0	0	0	0	0	1	5594	1509	53	4		4	FAM5C	1	190067337	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7231204	190067337	59183284	64	5051											
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202571584	202571584	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYT2	NM_177402	exon5	c.T555A	p.P185P	CTTGTCAGGAAGG	.	132	99	77	0	.	93	T	202571584	A	T	202571584	2	4	41	1	0	0	0	0	0	0	0	1	15471	175	7	4		4	SYT2	1	202571584	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	12504247	202571584	46679037	65	5052											
FMOD	2331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203316593	203316593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FMOD	NM_002023	exon2	c.A806G	p.K269R	AGCAGCTTGGGCG	.	183	36	111	0	.	137	C	203316593	T	C	203316593	3	2	41	1	0	0	0	0	1	0	0	0	5959	1609	56	2	332	2	FMOD	1	203316593	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	745009	203316593	45934028	66	5053											
AVPR1B	553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206230897	206230897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AVPR1B	NM_000707	exon2	c.C1030A	p.H344N	AACAGCCACCTGT	.	257	72	138	0	.	569	A	206230897	C	A	206230897	3	1	41	1	0	0	0	0	1	0	0	0	1232	594	21	3	1036	3	AVPR1B	1	206230897	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2914304	206230897	43019724	67	5054											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207646133	207646133	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CR2	NM_001006658	exon10	c.A1587T	p.P529P	CCCACCACCCCCT	.	135	38	89	0	.	232	T	207646133	A	T	207646133	2	4	41	1	0	0	0	0	0	0	0	1	3842	146	6	4		4	CR2	1	207646133	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1415236	207646133	41604488	68	5055											
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209789949	209789949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAMB3	NM_000228	exon22	c.A3249T	p.Q1083H	ATACTTTTGTTTT	.	281	50	205	0	.	156	A	209789949	T	A	209789949	3	1	41	1	0	0	0	0	1	0	0	0	8612	1838	64	4	277	4	LAMB3	1	209789949	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2143816	209789949	39460672	69	5056											
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	211192594	211192594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNH1	NM_172362	exon6	c.T563A	p.L188Q	AGCTGTAGGACCT	.	58	29	25	0	.	94	T	211192594	A	T	211192594	3	4	41	1	0	0	0	0	1	0	0	0	8031	420	15	4	2430	4	KCNH1	1	211192594	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1402645	211192594	38058027	70	5057											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211751602	211751602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC30A1	NM_021194	exon1	c.G353T	p.G118V	CCGACCCCAAGGA	.	205	43	105	0	.	93	A	211751602	C	A	211751602	3	1	41	1	0	0	0	0	1	0	0	0	14553	623	22	3	1178	3	SLC30A1	1	211751602	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	559008	211751602	37499019	71	5058											
C1orf227	149643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213009317	213009317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf227	NM_001024601	exon2	c.A175C	p.T59P	TATCAGTAAAGGA	.	302	213	204	1	.	514	G	213009317	T	G	213009317	3	3	41	1	0	0	0	0	1	0	0	0	2033	1638	57	5	129	5	C1orf227	1	213009317	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1257715	213009317	36241304	72	5059											
GPATCH2	55105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217783743	217783743	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPATCH2	NM_018040	exon6	c.1019-1G>T	.	GGAAACCTGTAAA	.	124	35	61	0	.	91	A	217783743	C	A	217783743	5	1	41	1	0	0	0	0	0	0	1	0	6591	695	24	3	592	3	GPATCH2	1	217783743	Splice_Site	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4774426	217783743	31466878	73	5060											
EPRS	2058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220156702	220156702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPRS	NM_004446	exon22	c.A3129G	p.I1043M	GCCACTTATGTCA	.	466	97	289	1	.	92	C	220156702	T	C	220156702	3	2	41	1	0	0	0	0	1	0	0	0	5191	1744	61	2	1453	2	EPRS	1	220156702	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2372959	220156702	29093919	74	5061											
ZNF678	339500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227834348	227834348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF678	NM_178549	exon3	c.A227G	p.N76S	TCGAGAACTACAG	.	100	69	60	1	.	91	G	227834348	A	G	227834348	3	3	41	1	0	0	0	0	1	0	0	0	18082	43	2	2	237	2	ZNF678	1	227834348	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	7677646	227834348	21416273	75	5062											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228462464	228462464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OBSCN	NM_001271223	exon24	c.G7000T	p.D2334Y	ATCTCAGACCTGG	.	96	16	73	0	.	403	T	228462464	G	T	228462464	3	4	41	1	0	0	0	0	1	0	0	0	10812	942	33	3	5949	3	OBSCN	1	228462464	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	628116	228462464	20788157	76	5063											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228559946	228559946	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OBSCN	NM_001271223	exon105	c.A24338T	p.E8113V	AGGCTGAGGATCT	.	192	39	113	0	.	403	T	228559946	A	T	228559946	3	4	41	1	0	0	0	0	1	0	0	0	10812	304	11	4	23047	4	OBSCN	1	228559946	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	97482	228559946	20690675	77	5064											
TSNAX	7257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231700443	231700443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TSNAX	NM_005999	exon6	c.G665T	p.R222L	TTTTACGTCAGGT	.	359	240	237	0	.	90	T	231700443	G	T	231700443	3	4	41	1	0	0	0	0	1	0	0	0	16628	1145	40	1	687	1	TSNAX	1	231700443	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3140497	231700443	17550178	78	5065											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231829654	231829654	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DISC1	NM_001164541	exon2	c.A150T	p.T50T	CTCGACAGGGCCT	.	134	25	93	0	.	91	T	231829654	A	T	231829654	2	4	41	1	0	0	0	0	0	0	0	1	4538	175	7	4		4	DISC1	1	231829654	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	129211	231829654	17420967	79	5066											
KIAA1804	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233515084	233515084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1804	NM_032435	exon9	c.A2332T	p.T778S	CCTCCCACAAGCC	.	299	64	193	2	.	523	T	233515084	A	T	233515084	3	4	41	1	0	0	0	0	1	0	0	0	8259	159	6	4	2366	4	KIAA1804	1	233515084	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1685430	233515084	15735537	80	5067											
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237666678	237666678	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RYR2	NM_001035	exon22	c.A2486T	p.K829I	TGCCAAAAGAAAA	.	273	198	193	2	.	158	T	237666678	A	T	237666678	3	4	41	1	0	0	0	0	1	0	0	0	13769	14	1	4	2572	4	RYR2	1	237666678	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4151594	237666678	11583943	81	5068											
C1orf101	257044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244681971	244681971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf101	NM_173807	exon8	c.T507G	p.V169V	AAAAGTTTATTCT	.	623	137	387	0	.	154	G	244681971	T	G	244681971	2	3	41	1	0	0	0	0	0	0	0	1	1976	1828	64	5		5	C1orf101	1	244681971	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7015293	244681971	4568650	82	5069											
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245772585	245772585	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF26B	NM_018012	exon8	c.A1669T	p.I557F	ACCATGATCGGAA	.	509	105	331	1	.	25	T	245772585	A	T	245772585	3	4	41	1	0	0	0	0	1	0	0	0	8295	333	12	4	1699	4	KIF26B	1	245772585	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1090614	245772585	3478036	83	5070											
ZNF496	84838	broad.mit.edu;ucsc.edu	37	1	247492170	247492170	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF496	NM_032752	exon5	c.391-2A>G	.	TTGAGCTGCAATC	.	68	13	75	2	.	91	C	247492170	T	C	247492170	5	2	41	1	0	0	0	0	0	0	1	0	17942	1594	55	2	1398	2	ZNF496	1	247492170	Splice_Site	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1719585	247492170	1758451	84	5071											
OR2G3	81469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247769234	247769234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2G3	NM_001001914	exon1	c.C347A	p.A116D	TCTTGGCTGACAT	.	288	202	186	1	.	68	A	247769234	C	A	247769234	3	1	41	1	0	0	0	0	1	0	0	0	10999	797	28	3	349	3	OR2G3	1	247769234	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	277064	247769234	1481387	85	5072											
OR14A16	284532	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978552	247978552	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR14A16	NM_001001966	exon1	c.C480A	p.G160G	GAAGGTGCCAGCT	.	230	52	129	1	.	46	T	247978552	G	T	247978552	2	4	41	1	0	0	0	0	0	0	0	1	10945	1306	46	3		3	OR14A16	1	247978552	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	209318	247978552	1272069	86	5073											
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248366439	248366439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2M3	NM_001004689	exon1	c.C70T	p.H24Y	CCCACCCACACCT	.	563	114	339	0	.	70	T	248366439	C	T	248366439	3	4	41	1	0	0	0	0	1	0	0	0	11011	594	21	3	72	3	OR2M3	1	248366439	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	387887	248366439	884182	87	5074											
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248487089	248487089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2M7	NM_001004691	exon1	c.A782T	p.Q261L	GTGGGCTGAATGC	.	374	82	249	1	.	70	A	248487089	T	A	248487089	3	1	41	1	0	0	0	0	1	0	0	0	11014	1580	55	4	159	4	OR2M7	1	248487089	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	120650	248487089	763532	88	5075											
OR2G6	391211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248685871	248685871	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2G6	NM_001013355	exon1	c.T924C	p.S308S	GGGTAGTGCTGCT	.	74	8	37	0	.	71	C	248685871	T	C	248685871	2	2	41	1	0	0	0	0	0	0	0	1	11000	1693	59	2		2	OR2G6	1	248685871	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	198782	248685871	564750	89	5076											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	1983303	1983303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYT1L	NM_015025	exon7	c.G79T	p.E27X	ACAGCTCTTGTAT	.	92	32	141	0	.	95	A	1983303	C	A	1983303	4	1	41	1	0	0	0	0	0	1	0	0	10107	922	32	3	3551	3	MYT1L	2	1983303	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10		1983303	241216070	90	5077											
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	19552136	19552136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OSR1	NM_145260	exon3	c.A701G	p.Q234R	CACTCTTGACACT	.	115	48	108	0	.	257	C	19552136	T	C	19552136	3	2	41	1	0	0	0	0	1	0	0	0	11293	1812	63	2	103	2	OSR1	2	19552136	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	17568833	19552136	223647237	91	5078											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21229513	21229513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APOB	NM_000384	exon26	c.T10227A	p.S3409R	GTTATGACTACCC	.	109	48	103	0	.	175	T	21229513	A	T	21229513	3	4	41	1	0	0	0	0	1	0	0	0	785	272	10	4	3480	4	APOB	2	21229513	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1677377	21229513	221969860	92	5079											
GPR113	165082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26540974	26540974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR113	NM_001145168	exon2	c.T196G	p.C66G	TGGGGCAGGCAGG	.	96	45	128	2	.	94	C	26540974	A	C	26540974	3	2	41	1	0	0	0	0	1	0	0	0	6630	188	7	5	3180	5	GPR113	2	26540974	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5311461	26540974	216658399	93	5080											
EMILIN1	11117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	27302028	27302028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMILIN1	NM_007046	exon1	c.A95G	p.Y32C	GCCTCTACACAGG	.	47	16	70	0	.	91	G	27302028	A	G	27302028	3	3	41	1	0	0	0	0	1	0	0	0	5093	391	14	2	97	2	EMILIN1	2	27302028	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	761054	27302028	215897345	94	5081											
WDR43	23160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29169340	29169340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR43	NM_015131	exon17	c.A1829T	p.D610V	CTGATGATGAAAT	.	126	44	120	0	.	69	T	29169340	A	T	29169340	3	4	41	1	0	0	0	0	1	0	0	0	17292	333	12	4	1895	4	WDR43	2	29169340	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1867312	29169340	214030033	95	5082											
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37599570	37599570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	QPCT	NM_012413	exon6	c.T895A	p.Y299N	TACAGTTATGGAG	.	99	41	119	0	.	90	A	37599570	T	A	37599570	3	1	41	1	0	0	0	0	1	0	0	0	12874	1754	61	4	917	4	QPCT	2	37599570	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8430230	37599570	205599803	96	5083											
FOXN2	3344	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48602463	48602463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXN2	NM_002158	exon7	c.A1177G	p.I393V	CAAGAAATTGATG	.	100	44	101	1	.	226	G	48602463	A	G	48602463	3	3	41	1	0	0	0	0	1	0	0	0	6020	101	4	2	1195	2	FOXN2	2	48602463	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	11002893	48602463	194596910	97	5084											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	50149221	50149221	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NRXN1	NM_001135659	exon24	c.C4505A	p.S1502X	TGGTATGAGCCTT	.	125	53	126	0	.	92	T	50149221	G	T	50149221	4	4	41	1	0	0	0	0	0	1	0	0	10665	1294	45	3	142	3	NRXN1	2	50149221	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1546758	50149221	193050152	98	5085											
SPTBN1	6711	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54882216	54882216	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTBN1	NM_003128	exon28	c.A5832G	p.S1944S	TGTATCATCTGTT	.	113	45	123	1	.	140	G	54882216	A	G	54882216	2	3	41	1	0	0	0	0	0	0	0	1	15118	204	8	2		2	SPTBN1	2	54882216	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4732995	54882216	188317157	99	5086											
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62112155	62112155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCT4	NM_001256721	exon2	c.G180C	p.M60I	CTTTACCATTTTA	.	105	51	124	0	.	92	G	62112155	C	G	62112155	3	3	41	1	0	0	0	0	1	0	0	0	2955	608	21	4	1491	4	CCT4	2	62112155	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	7229939	62112155	181087218	100	5087											
MPHOSPH10	10199	ucsc.edu;bcgsc.ca	37	2	71376544	71376544	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MPHOSPH10	NM_005791	exon10	c.A1857G	p.L619L	GAAGTTAAAACAG	.	468	185	483	2	.	93	G	71376544	A	G	71376544	2	3	41	1	0	0	0	0	0	0	0	1	9725	359	13	2		2	MPHOSPH10	2	71376544	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	9264389	71376544	171822829	101	5088											
RAB11FIP5	26056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73315575	73315575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAB11FIP5	NM_015470	exon3	c.A1171G	p.S391G	TACGACTGCCTCT	.	39	15	39	0	.	90	C	73315575	T	C	73315575	3	2	41	1	0	0	0	0	1	0	0	0	12897	1580	55	2	802	2	RAB11FIP5	2	73315575	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1939031	73315575	169883798	102	5089											
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74883712	74883712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEMA4F	NM_001271662	exon2	c.C197A	p.S66Y	ATTACTCTGTTCT	.	119	52	148	0	.	93	A	74883712	C	A	74883712	3	1	41	1	0	0	0	0	1	0	0	0	14035	913	32	3	203	3	SEMA4F	2	74883712	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1568137	74883712	168315661	103	5090											
SUCLG1	8802	ucsc.edu;bcgsc.ca	37	2	84668526	84668526	+	Missense_Mutation	SNP	C	C	A	rs146102400	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SUCLG1	NM_003849	exon4	c.G376T	p.A126S	CAGCAGCAGCAAA	.	260	98	327	2	C|1.000;T|0.000	90	A	84668526	C	A	84668526	3	1	41	1	0	0	0	0	1	0	0	0	15363	710	25	3	688	3	SUCLG1	2	84668526	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	9784814	84668526	158530847	104	5091											
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98797635	98797635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VWA3B	NM_144992	exon9	c.T1271C	p.I424T	TGGATATAAAAGC	.	125	48	196	0	.	139	C	98797635	T	C	98797635	3	2	41	1	0	0	0	0	1	0	0	0	17238	1406	49	2	1301	2	VWA3B	2	98797635	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	14129109	98797635	144401738	105	5092											
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103040730	103040730	+	Missense_Mutation	SNP	A	A	T	rs138125296	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL18RAP	NM_003853	exon5	c.A435T	p.L145F	GATTTTAGAAGTT	.	177	79	161	0	A|1.000;G|0.000	95	T	103040730	A	T	103040730	3	4	41	1	0	0	0	0	1	0	0	0	7648	417	15	4	445	4	IL18RAP	2	103040730	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4243095	103040730	140158643	106	5093											
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105858393	105858393	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR45	NM_007227	exon1	c.C78A	p.S26S	GGGGTCCACCCAG	.	121	50	132	0	.	154	A	105858393	C	A	105858393	2	1	41	1	0	0	0	0	0	0	0	1	6696	581	21	3		3	GPR45	2	105858393	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2817663	105858393	137340980	107	5094											
ACOXL	55289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111556610	111556610	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACOXL	NM_001142807	exon7	c.T480A	p.V160V	CATCGTTCCTGTC	.	118	62	115	0	.	90	A	111556610	T	A	111556610	2	1	41	1	0	0	0	0	0	0	0	1	161	1770	62	4		4	ACOXL	2	111556610	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5698217	111556610	131642763	108	5095											
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	116593732	116593732	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPP10	NM_020868	exon22	c.1951-1G>T	.	CCCCCAGGGTTAT	.	125	46	127	0	.	142	T	116593732	G	T	116593732	5	4	41	1	0	0	0	0	0	0	1	0	4727	1014	35	3	2207	3	DPP10	2	116593732	Splice_Site	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5037122	116593732	126605641	109	5096											
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	120020691	120020691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STEAP3	NM_182915	exon6	c.G1274T	p.W425L	ACGGCTGGACCCG	.	47	21	41	0	.	91	T	120020691	G	T	120020691	3	4	41	1	0	0	0	0	1	0	0	0	15278	1357	47	3	1292	3	STEAP3	2	120020691	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3426959	120020691	123178682	110	5097											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121743964	121743964	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	GLI2,NS,carcinoma,0	GLI2	NM_005270	exon12	c.G2067T	p.G689G	GCCCGGGAGCCTG	.	138	66	160	0	.	954	T	121743964	G	T	121743964	2	4	41	1	0	0	0	0	0	0	0	1	6438	1161	41	3		3	GLI2	2	121743964	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1723273	121743964	121455409	111	5098											
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131803692	131803692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF4	NM_015320	exon14	c.T2003C	p.L668P	TGGTGCTGGCGGA	.	50	13	57	0	.	292	C	131803692	T	C	131803692	3	2	41	1	0	0	0	0	1	0	0	0	908	1580	55	2	2141	2	ARHGEF4	2	131803692	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	10059728	131803692	111395681	112	5099											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152522831	152522831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEB	NM_004543	exon41	c.T4804A	p.Y1602N	TCATGTAGTGAAC	.	86	34	93	0	.	145	T	152522831	A	T	152522831	3	4	41	1	0	0	0	0	1	0	0	0	10302	420	15	4	21450	4	NEB	2	152522831	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	20719139	152522831	90676542	113	5100											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160087091	160087091	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TANC1	NM_033394	exon27	c.C5154A	p.P1718P	CAGACCCCGCAAC	.	111	43	135	0	.	92	A	160087091	C	A	160087091	2	1	41	1	0	0	0	0	0	0	0	1	15541	610	22	3		3	TANC1	2	160087091	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	7564260	160087091	83112282	114	5101											
DPP4	1803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162895528	162895528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPP4	NM_001935	exon7	c.G423T	p.Q141H	AATCAGCTGCCTG	.	164	58	180	0	.	93	A	162895528	C	A	162895528	3	1	41	1	0	0	0	0	1	0	0	0	4729	796	28	3	1957	3	DPP4	2	162895528	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2808437	162895528	80303845	115	5102											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166897949	166897949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN1A	NM_001165963	exon13	c.C2207T	p.P736L	CAACAGGGTGGGC	.	73	30	72	0	.	147	A	166897949	G	A	166897949	3	1	41	1	0	0	0	0	1	0	0	0	13914	1232	43	3	3878	3	SCN1A	2	166897949	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4002421	166897949	76301424	116	5103											
NOSTRIN	115677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169681160	169681160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOSTRIN	NM_001039724	exon3	c.A130C	p.S44R	GAAATTAGCTATG	.	600	221	701	0	.	90	C	169681160	A	C	169681160	3	2	41	1	0	0	0	0	1	0	0	0	10546	420	15	5	140	5	NOSTRIN	2	169681160	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2783211	169681160	73518213	117	5104											
PPIG	9360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170465241	170465241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPIG	NM_004792	exon7	c.A350G	p.K117R	GAGGGAAGGATAC	.	356	154	378	0	.	92	G	170465241	A	G	170465241	3	3	41	1	0	0	0	0	1	0	0	0	12324	72	3	2	368	2	PPIG	2	170465241	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	784081	170465241	72734132	118	5105											
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	174230178	174230178	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDCA7	NM_031942	exon7	c.895-2A>C	.	TAATGCAGGAAGA	.	65	34	80	0	.	91	C	174230178	A	C	174230178	5	2	41	1	0	0	0	0	0	0	1	0	3090	202	7	5	919	5	CDCA7	2	174230178	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3764937	174230178	68969195	119	5106											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179431803	179431803	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon326	c.A79056G	p.L26352L	ACCTTCTAAGAGT	.	119	43	120	0	.	636	C	179431803	T	C	179431803	2	2	41	1	0	0	0	0	0	0	0	1	16732	1519	53	2		2	TTN	2	179431803	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5201625	179431803	63767570	120	5107											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179544108	179544108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon142	c.C33700A	p.P11234T	GCACAGGAACTTT	.	136	48	168	1	.	636	T	179544108	G	T	179544108	3	4	41	1	0	0	0	0	1	0	0	0	16732	1174	41	3	70713	3	TTN	2	179544108	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	112305	179544108	63655265	121	5108											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179587117	179587117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon77	c.A22397C	p.Q7466P	GAAGTCTGTAGAT	.	98	38	109	0	.	636	G	179587117	T	G	179587117	3	3	41	1	0	0	0	0	1	0	0	0	16732	1580	55	5	82276	5	TTN	2	179587117	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	43009	179587117	63612256	122	5109											
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196729249	196729249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH7	NM_018897	exon41	c.A7130T	p.H2377L	TCTTCATGCCATT	.	143	67	165	2	.	102	A	196729249	T	A	196729249	3	1	41	1	0	0	0	0	1	0	0	0	4606	1464	51	4	5044	4	DNAH7	2	196729249	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	17142132	196729249	46470124	123	5110											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196913052	196913052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH7	NM_018897	exon4	c.A218T	p.E73V	AATGGTTCTGGAC	.	59	25	61	0	.	102	A	196913052	T	A	196913052	3	1	41	1	0	0	0	0	1	0	0	0	4606	1783	62	4	12104	4	DNAH7	2	196913052	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	183803	196913052	46286321	124	5111											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197183894	197183894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECW2	NM_020760	exon9	c.G1720A	p.D574N	GCTGATCTACCTC	.	101	39	108	0	.	668	T	197183894	C	T	197183894	3	4	41	1	0	0	0	0	1	0	0	0	7043	913	32	3	3082	3	HECW2	2	197183894	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	270842	197183894	46015479	125	5112											
MARS2	92935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198570872	198570872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MARS2	NM_138395	exon1	c.A743T	p.E248V	TGGACGAGGAGCT	.	106	43	122	2	.	92	T	198570872	A	T	198570872	3	4	41	1	0	0	0	0	1	0	0	0	9317	304	11	4	745	4	MARS2	2	198570872	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1386978	198570872	44628501	126	5113											
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202593826	202593826	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALS2	NM_020919	exon14	c.G2661A	p.K887K	TGCTTCCTTCCTT	.	162	86	180	0	.	275	T	202593826	C	T	202593826	2	4	41	1	0	0	0	0	0	0	0	1	550	680	24	3		3	ALS2	2	202593826	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4022954	202593826	40605547	127	5114											
PARD3B	117583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206036933	206036933	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PARD3B	NM_057177	exon12	c.1621-2A>T	.	TGCCTTAGGATGG	.	128	50	148	0	.	140	T	206036933	A	T	206036933	5	4	41	1	0	0	0	0	0	0	1	0	11444	434	15	4	1665	4	PARD3B	2	206036933	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3443107	206036933	37162440	128	5115											
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210557752	210557752	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAP2	NM_002374	exon7	c.T858A	p.P286P	ATCTCCTGGCCCT	.	141	60	165	0	.	591	A	210557752	T	A	210557752	2	1	41	1	0	0	0	0	0	0	0	1	9235	1567	55	4		4	MAP2	2	210557752	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4520819	210557752	32641621	129	5116											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215833480	215833480	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA12	NM_173076	exon38	c.T5742C	p.D1914D	TGTTATATCAAAA	.	122	44	109	0	.	99	G	215833480	A	G	215833480	2	3	41	1	0	0	0	0	0	0	0	1	30	446	16	2		2	ABCA12	2	215833480	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5275728	215833480	27365893	130	5117											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215914355	215914355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA12	NM_173076	exon6	c.T688A	p.S230T	CCTGGGAGAACTG	.	95	43	111	0	.	99	T	215914355	A	T	215914355	3	4	41	1	0	0	0	0	1	0	0	0	30	304	11	4	7322	4	ABCA12	2	215914355	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	80875	215914355	27285018	131	5118											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218750502	218750502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNS1	NM_022648	exon13	c.A706G	p.I236V	GCTCGATGGTGAT	.	74	29	72	0	.	156	C	218750502	T	C	218750502	3	2	41	1	0	0	0	0	1	0	0	0	16340	1464	51	2	4585	2	TNS1	2	218750502	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2836147	218750502	24448871	132	5119											
SERPINE2	5270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224866418	224866418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SERPINE2	NM_001136530	exon2	c.T236A	p.L79Q	GCCCCCAGCTGAA	.	63	27	63	0	.	290	T	224866418	A	T	224866418	3	4	41	1	0	0	0	0	1	0	0	0	14112	188	7	4	1028	4	SERPINE2	2	224866418	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6115916	224866418	18332955	133	5120											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227886777	227886777	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A4	NM_000092	exon44	c.C4203T	p.G1401G	TGAGGGGCCTCTC	.	247	105	240	1	.	142	A	227886777	G	A	227886777	2	1	41	1	0	0	0	0	0	0	0	1	3693	1190	42	3		3	COL4A4	2	227886777	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3020359	227886777	15312596	134	5121											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242380941	242380941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FARP2	NM_014808	exon13	c.C1381T	p.L461F	CAGCCCCTCGGGC	.	89	40	96	0	.	93	T	242380941	C	T	242380941	3	4	41	1	0	0	0	0	1	0	0	0	5677	681	24	3	1427	3	FARP2	2	242380941	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	14494164	242380941	818432	135	5122											
IL17RC	84818	ucsc.edu;bcgsc.ca	37	3	9974301	9974301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL17RC	NM_153461	exon17	c.A1610G	p.K537R	TCCACAAGCGCTG	.	151	129	214	2	.	92	G	9974301	A	G	9974301	3	3	41	1	0	0	0	0	1	0	0	0	7641	72	3	2	1676	2	IL17RC	3	9974301	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10		9974301	188048129	136	5123											
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12858225	12858225	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAND2	NM_001162499	exon10	c.T1794A	p.L598L	CCACCTTGTAGGC	.	123	105	149	1	.	72	A	12858225	T	A	12858225	2	1	41	1	0	0	0	0	0	0	0	1	2616	1799	63	4		4	CAND2	3	12858225	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2883924	12858225	185164205	137	5124											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13401819	13401819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUP210	NM_024923	exon15	c.A2105G	p.N702S	TGATAATTCCGGG	.	115	101	161	0	.	256	C	13401819	T	C	13401819	3	2	41	1	0	0	0	0	1	0	0	0	10760	1493	52	2	3662	2	NUP210	3	13401819	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	543594	13401819	184620611	138	5125											
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14561754	14561754	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIP2	.	.	.	.	ATGGACAGGATGT	.	76	55	86	1	.	69	G	14561754	A	G	14561754	1	3	41	0	1	0	0	0	0	0	0	0	6788	188	7	2		2	GRIP2	3	14561754	RNA	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1159935	14561754	183460676	139	5126											
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	14860937	14860937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FGD5	NM_152536	exon1	c.C359A	p.S120X	AGGATTCAGTGGC	.	187	158	204	1	.	231	A	14860937	C	A	14860937	4	1	41	1	0	0	0	0	0	1	0	0	5836	838	29	3	361	3	FGD5	3	14860937	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	299183	14860937	183161493	140	5127											
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37774280	37774280	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITGA9	NM_002207	exon19	c.A2145C	p.S715S	GAGGTCAAAGTCA	.	74	63	92	0	.	715	C	37774280	A	C	37774280	2	2	41	1	0	0	0	0	0	0	0	1	7883	117	5	5		5	ITGA9	3	37774280	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	22913343	37774280	160248150	141	5128											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38766700	38766700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN10A	NM_006514	exon17	c.T3193G	p.W1065G	CTTTCCACGTCTC	.	60	45	140	1	.	99	C	38766700	A	C	38766700	3	2	41	1	0	0	0	0	1	0	0	0	13912	159	6	5	2721	5	SCN10A	3	38766700	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	992420	38766700	159255730	142	5129											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38926834	38926834	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN11A	NM_014139	exon17	c.T3009C	p.F1003F	CCATCCAAAGCCA	.	118	102	144	1	.	99	G	38926834	A	G	38926834	2	3	41	1	0	0	0	0	0	0	0	1	13913	127	5	2		2	SCN11A	3	38926834	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	160134	38926834	159095596	143	5130											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266127	41266150	+	In_Frame_Del	DEL	ACAGCTCCTTCTCTGAGTGGTAAA	ACAGCTCCTTCTCTGAGTGGTAAA	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	ACAGCTCCTTCTCTGAGTGGTAAA	ACAGCTCCTTCTCTGAGTGGTAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CTNNB1,NS,carcinoma,-1	CTNNB1	NM_001098209	exon3	c.124_147del	p.42_49del	ACTACCACAGCTC	.	130	63	196	0	.	24361	-	41266150	ACAGCTCCTTCTCTGAGTGGTAAA	-	41266127	7	5	41	1	0	1	0	1	0	0	0	0	4016	159	6	0	130	0	CTNNB1	3	41266127	In_Frame_Del	DEL	ACAGCTCCTTCTCTGAGTGGTAAA	TCGA-CC-A7IH-01A-11D-A33K-10	2339293	41266127	156756303	144	5131											
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46937344	46937344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTH1R	NM_001184744	exon4	c.G298T	p.G100C	CCCACTGGCAGCA	.	100	90	132	1	.	522	T	46937344	G	T	46937344	3	4	41	1	0	0	0	0	1	0	0	0	12758	1348	47	3	308	3	PTH1R	3	46937344	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5671217	46937344	151085086	145	5132											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47042832	47042832	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBEAL2	NM_015175	exon29	c.G4548T	p.L1516L	GGTCCTGGCCAGC	.	41	36	56	0	.	69	T	47042832	G	T	47042832	2	4	41	1	0	0	0	0	0	0	0	1	10189	1335	47	3		3	NBEAL2	3	47042832	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	105488	47042832	150979598	146	5133											
CCDC36	339834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49293846	49293846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC36	NM_001135197	exon8	c.T916C	p.W306R	GCTGCATGGAATC	.	67	59	89	1	.	92	C	49293846	T	C	49293846	3	2	41	1	0	0	0	0	1	0	0	0	2808	1464	51	2	942	2	CCDC36	3	49293846	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2251014	49293846	148728584	147	5134											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52554842	52554842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STAB1	NM_015136	exon55	c.G5729T	p.R1910L	GCTGGCGCTTCTA	.	42	32	54	0	.	139	T	52554842	G	T	52554842	3	4	41	1	0	0	0	0	1	0	0	0	15236	1087	38	1	5947	1	STAB1	3	52554842	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3260996	52554842	145467588	148	5135											
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu	37	3	53700544	53700544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA1D	NM_001128840	exon7	c.G1098A	p.W366X	GGGCTGGACAGAT	.	128	6	123	0	.	100	A	53700544	G	A	53700544	4	1	41	1	0	0	0	0	0	1	0	0	2541	1183	41	3	1124	3	CACNA1D	3	53700544	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1145702	53700544	144321886	149	5136											
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	54958771	54958771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRTM1	NM_020678	exon2	c.A479T	p.Q160L	TCAAGCTGCTGAA	.	140	123	187	0	.	90	A	54958771	T	A	54958771	3	1	41	1	0	0	0	0	1	0	0	0	9044	1580	55	4	566	4	LRTM1	3	54958771	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1258227	54958771	143063659	150	5137											
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67049479	67049479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KBTBD8	NM_032505	exon2	c.C91T	p.H31Y	CCCTTCCATGCTT	.	271	93	208	0	.	587	T	67049479	C	T	67049479	3	4	41	1	0	0	0	0	1	0	0	0	7999	594	21	3	97	3	KBTBD8	3	67049479	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	12090708	67049479	130972951	151	5138											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69097054	69097054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMF1	NM_007114	exon2	c.A802G	p.I268V	CACTTATTACACT	.	68	30	58	0	.	90	C	69097054	T	C	69097054	3	2	41	1	0	0	0	0	1	0	0	0	16225	1493	52	2	2543	2	TMF1	3	69097054	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2047575	69097054	128925376	152	5139											
ROBO2	6092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77629214	77629214	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO2	NM_002942	exon16	c.A2445T	p.A815A	GGTTGCAGCTAGT	.	175	105	142	1	.	328	T	77629214	A	T	77629214	2	4	41	1	0	0	0	0	0	0	0	1	13514	175	7	4		4	ROBO2	3	77629214	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8532160	77629214	120393216	153	5140											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78684981	78684981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO1	NM_002941	exon23	c.G3315T	p.Q1105H	TTGTTTCTGCTGT	.	326	95	275	0	.	67	A	78684981	C	A	78684981	3	1	41	1	0	0	0	0	1	0	0	0	13513	912	32	3	1676	3	ROBO1	3	78684981	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1055767	78684981	119337449	154	5141											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78711213	78711213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO1	NM_002941	exon15	c.T2018A	p.L673Q	TTTCCCAGCTCTC	.	291	86	232	0	.	67	T	78711213	A	T	78711213	3	4	41	1	0	0	0	0	1	0	0	0	13513	188	7	4	3005	4	ROBO1	3	78711213	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	26232	78711213	119311217	155	5142											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	96585699	96585699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA6	NM_001080448	exon2	c.G416A	p.G139E	TACTGGGAGAGCT	.	506	202	553	2	.	1561	A	96585699	G	A	96585699	3	1	41	1	0	0	0	0	1	0	0	0	5171	1174	41	3	422	3	EPHA6	3	96585699	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	17874486	96585699	101436731	156	5143											
ZBED2	79413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111312691	111312691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBED2	NM_024508	exon2	c.C358A	p.Q120K	GGCGCTGCCCAGC	.	67	30	70	0	.	91	T	111312691	G	T	111312691	3	4	41	1	0	0	0	0	1	0	0	0	17515	1328	46	3	302	3	ZBED2	3	111312691	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	14726992	111312691	86709739	157	5144											
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111394182	111394182	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCXD2	NM_001185106	exon1	c.C90A	p.V30V	GGAGGTCTGCAAT	.	213	91	266	0	.	227	A	111394182	C	A	111394182	2	1	41	1	0	0	0	0	0	0	0	1	12042	900	32	3		3	PLCXD2	3	111394182	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	81491	111394182	86628248	158	5145											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112358178	112358178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC80	NM_199511	exon2	c.A575G	p.Q192R	CCTGCCTGGTGGA	.	130	63	126	0	.	92	C	112358178	T	C	112358178	3	2	41	1	0	0	0	0	1	0	0	0	2854	1580	55	2	2305	2	CCDC80	3	112358178	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	963996	112358178	85664252	159	5146											
CD200R1L	344807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112546319	112546319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD200R1L	NM_001008784	exon3	c.G325T	p.D109Y	GAAGGTCCGAATT	.	170	63	183	1	.	91	A	112546319	C	A	112546319	3	1	41	1	0	0	0	0	1	0	0	0	2982	855	30	3	506	3	CD200R1L	3	112546319	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	188141	112546319	85476111	160	5147											
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112993376	112993376	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BOC	NM_033254	exon9	c.A1389T	p.P463P	GTGTCCAGGAGAG	.	129	61	182	0	.	157	T	112993376	A	T	112993376	2	4	41	1	0	0	0	0	0	0	0	1	1481	175	7	4		4	BOC	3	112993376	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	447057	112993376	85029054	161	5148											
C3orf30	152405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	118865983	118865983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf30	NM_152539	exon1	c.A947G	p.E316G	CCACTGAACTAGC	.	136	57	130	0	.	92	G	118865983	A	G	118865983	3	3	41	1	0	0	0	0	1	0	0	0	2220	246	9	2	949	2	C3orf30	3	118865983	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5872607	118865983	79156447	162	5149											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121208148	121208148	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POLQ	NM_199420	exon16	c.G3630A	p.Q1210Q	ATTTTTCTGTTTG	.	121	53	109	0	.	664	T	121208148	C	T	121208148	2	4	41	1	0	0	0	0	0	0	0	1	12208	912	32	3		3	POLQ	3	121208148	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2342165	121208148	76814282	163	5150											
ADCY5	111	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123051454	123051454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADCY5	NM_183357	exon4	c.T1475A	p.M492K	AGGGTCATGACCA	.	141	50	173	2	.	94	T	123051454	A	T	123051454	3	4	41	1	0	0	0	0	1	0	0	0	297	217	8	4	2382	4	ADCY5	3	123051454	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1843306	123051454	74970976	164	5151											
SLC41A3	54946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	125775394	125775416	+	Frame_Shift_Del	DEL	ATGGCCAGGCAATGCACCACGAT	ATGGCCAGGCAATGCACCACGAT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	ATGGCCAGGCAATGCACCACGAT	ATGGCCAGGCAATGCACCACGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC41A3	NM_001008487	wholegene			ACCACCATGGCCA	.	88	14	140	0	.	90	-	125775416	ATGGCCAGGCAATGCACCACGAT	-	125775394	7	5	41	1	0	1	0	1	0	0	0	0	14631	217	8	0	1585	0	SLC41A3	3	125775394	Frame_Shift_Del	DEL	ATGGCCAGGCAATGCACCACGAT	TCGA-CC-A7IH-01A-11D-A33K-10	2723940	125775394	72247036	165	5152											
TPRA1	131601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127298924	127298924	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPRA1	NM_001142646	exon2	c.A66G	p.P22P	GATGTTTGGTGCC	.	39	4	52	0	.	90	C	127298924	T	C	127298924	2	2	41	1	0	0	0	0	0	0	0	1	16414	1799	63	2		2	TPRA1	3	127298924	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1523530	127298924	70723506	166	5153											
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127642796	127642796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KBTBD12	NM_207335	exon1	c.A892T	p.S298C	GATGCCAGTTTTT	.	131	60	162	0	.	23	T	127642796	A	T	127642796	3	4	41	1	0	0	0	0	1	0	0	0	7991	188	7	4	894	4	KBTBD12	3	127642796	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	343872	127642796	70379634	167	5154											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130290136	130290136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL6A6	NM_001102608	exon6	c.T2876G	p.M959R	TAGCCATGGCAGG	.	193	80	240	0	.	76	G	130290136	T	G	130290136	3	3	41	1	0	0	0	0	1	0	0	0	3703	1464	51	5	2898	5	COL6A6	3	130290136	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2647340	130290136	67732294	168	5155											
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132075574	132075574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACPP	NM_001099	exon10	c.A1013T	p.E338V	AGCACGAGCCGTA	.	99	26	158	0	.	91	T	132075574	A	T	132075574	3	4	41	1	0	0	0	0	1	0	0	0	167	304	11	4	1051	4	ACPP	3	132075574	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1785438	132075574	65946856	169	5156											
C3orf36	80111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133647332	133647332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf36	NM_025041	exon1	c.T316C	p.C106R	GTGAGCAAGGTGG	.	134	45	175	0	.	91	G	133647332	A	G	133647332	3	3	41	1	0	0	0	0	1	0	0	0	2226	130	5	2	185	2	C3orf36	3	133647332	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1571758	133647332	64375098	170	5157											
DZIP1L	199221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137787119	137787119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DZIP1L	NM_173543	exon13	c.C1706A	p.P569Q	GGGGGTGGCTCTG	.	55	18	100	2	.	92	T	137787119	G	T	137787119	3	4	41	1	0	0	0	0	1	0	0	0	4864	1348	47	3	613	3	DZIP1L	3	137787119	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4139787	137787119	60235311	171	5158											
RASA2	5922	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141290358	141290358	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RASA2	NM_006506	exon11	c.T1131C	p.F377F	TCCTTTTGCCACT	.	200	64	221	1	.	661	C	141290358	T	C	141290358	2	2	41	1	0	0	0	0	0	0	0	1	13061	1809	63	2		2	RASA2	3	141290358	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3503239	141290358	56732072	172	5159											
GRK7	131890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141497734	141497734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRK7	NM_139209	exon1	c.G608T	p.G203V	GTTTTGGGGAGGT	.	170	70	193	1	.	522	T	141497734	G	T	141497734	3	4	41	1	0	0	0	0	1	0	0	0	6794	1232	43	3	610	3	GRK7	3	141497734	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	207376	141497734	56524696	173	5160											
GK5	256356	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141884551	141884551	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GK5	NM_001039547	exon16	c.A1503G	p.P501P	CTTCTGTGGCTTG	.	143	60	158	1	.	90	C	141884551	T	C	141884551	2	2	41	1	0	0	0	0	0	0	0	1	6422	1683	59	2		2	GK5	3	141884551	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	386817	141884551	56137879	174	5161											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142145680	142145680	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	XRN1	NM_001042604	exon3	c.A312T	p.S104S	CTTTGCTGACCTT	.	68	40	94	0	.	93	A	142145680	T	A	142145680	2	1	41	1	0	0	0	0	0	0	0	1	17456	1567	55	4		4	XRN1	3	142145680	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	261129	142145680	55876750	175	5162											
C3orf58	205428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	143708572	143708572	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf58	NM_173552	exon3	c.G1182A	p.R394R	TGGCCGGCTCGAG	.	142	69	140	2	.	91	A	143708572	G	A	143708572	2	1	41	1	0	0	0	0	0	0	0	1	2236	1190	42	3		3	C3orf58	3	143708572	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1562892	143708572	54313858	176	5163											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151160801	151160801	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IGSF10	NM_178822	exon5	c.A5934G	p.P1978P	CTTGGATGGTAAC	.	94	38	108	0	.	102	C	151160801	T	C	151160801	2	2	41	1	0	0	0	0	0	0	0	1	7597	1451	51	2		2	IGSF10	3	151160801	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7452229	151160801	46861629	177	5164											
KCNAB1	7881	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155838579	155838579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNAB1	NM_172160	exon1	c.T179A	p.L60Q	GTCAACTGGCTCT	.	132	53	138	1	.	94	A	155838579	T	A	155838579	3	1	41	1	0	0	0	0	1	0	0	0	8009	1580	55	4	181	4	KCNAB1	3	155838579	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4677778	155838579	42183851	178	5165											
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157031464	157031464	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VEPH1	NM_001167912	exon11	c.G1956T	p.G652G	AGCACCCCCTGCC	.	91	33	103	0	.	155	A	157031464	C	A	157031464	2	1	41	1	0	0	0	0	0	0	0	1	17151	610	22	3		3	VEPH1	3	157031464	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1192885	157031464	40990966	179	5166											
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160803874	160803874	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	B3GALNT1	NM_001038628	exon8	c.T669C	p.H223H	AGAAATATGGGTT	.	69	25	84	0	.	91	G	160803874	A	G	160803874	2	3	41	1	0	0	0	0	0	0	0	1	1245	446	16	2		2	B3GALNT1	3	160803874	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3772410	160803874	37218556	180	5167											
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167183368	167183368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SERPINI2	NM_001012303	exon5	c.A602T	p.Q201L	AATTTCTGTTTCC	.	102	43	106	0	.	228	A	167183368	T	A	167183368	3	1	41	1	0	0	0	0	1	0	0	0	14119	1580	55	4	669	4	SERPINI2	3	167183368	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6379494	167183368	30839062	181	5168											
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	171395376	171395376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLD1	NM_002662	exon17	c.A1976G	p.Q659R	TCAAGTTGAACCC	.	113	56	147	0	.	660	C	171395376	T	C	171395376	3	2	41	1	0	0	0	0	1	0	0	0	12045	1812	63	2	1292	2	PLD1	3	171395376	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4212008	171395376	26627054	182	5169											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183689367	183689367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCC5	NM_005688	exon11	c.A1745T	p.D582V	TCCAGATCGATGC	.	52	21	108	0	.	137	A	183689367	T	A	183689367	3	1	41	1	0	0	0	0	1	0	0	0	56	1435	50	4	2648	4	ABCC5	3	183689367	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	12293991	183689367	14333063	183	5170											
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	189690681	189690681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LEPREL1	NM_018192	exon11	c.T1681C	p.C561R	TTCGGCAGACCAT	.	250	106	268	0	.	155	G	189690681	A	G	189690681	3	3	41	1	0	0	0	0	1	0	0	0	8730	188	7	2	465	2	LEPREL1	3	189690681	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6001314	189690681	8331749	184	5171											
LEPREL1	55214	broad.mit.edu;mdanderson.org	37	3	189838134	189838134	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LEPREL1	NM_018192	exon1	c.G387A	p.G129G	GGGGCCCCCGAGG	.	24	8	25	0	.	155	T	189838134	C	T	189838134	2	4	41	1	0	0	0	0	0	0	0	1	8730	610	22	3		3	LEPREL1	3	189838134	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	147453	189838134	8184296	185	5172											
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	193332727	193332727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OPA1	NM_130832	exon2	c.A248T	p.Q83L	GCTACCAGCCTCG	.	246	17	280	0	.	68	T	193332727	A	T	193332727	3	4	41	1	0	0	0	0	1	0	0	0	10871	188	7	4	254	4	OPA1	3	193332727	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3494593	193332727	4689703	186	5173											
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	193374929	193374929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OPA1	NM_130837	exon23	c.G2239T	p.E747X	GGGAAAGAGCATG	.	131	64	191	0	.	68	T	193374929	G	T	193374929	4	4	41	1	0	0	0	0	0	1	0	0	10871	943	33	3	2329	3	OPA1	3	193374929	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	42202	193374929	4647501	187	5174											
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195112843	195112843	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACAP2	NM_012287	exon2	c.A87T	p.A29A	CAATTCTGCCACA	.	775	294	806	1	.	136	A	195112843	T	A	195112843	2	1	41	1	0	0	0	0	0	0	0	1	119	1567	55	4		4	ACAP2	3	195112843	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1737914	195112843	2909587	188	5175											
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578129	5578129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EVC2	NM_147127	exon18	c.C3110T	p.A1037V	TGGGCTGCCTCCT	.	72	37	62	0	.	155	A	5578129	G	A	5578129	3	1	41	1	0	0	0	0	1	0	0	0	5286	1319	46	3	836	3	EVC2	4	5578129	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		5578129	185576147	189	5176											
EVC2	132884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5642427	5642427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EVC2	NM_147127	exon10	c.G1284T	p.M428I	AGCACTCATTTTT	.	139	77	115	1	.	155	A	5642427	C	A	5642427	3	1	41	1	0	0	0	0	1	0	0	0	5286	826	29	3	2694	3	EVC2	4	5642427	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	64298	5642427	185511849	190	5177											
ABLIM2	84448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8029484	8029484	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABLIM2	NM_001130083	exon13	c.1267+2T>A	.	TGCCTTACCTCGG	.	121	42	106	0	.	47	T	8029484	A	T	8029484	5	4	41	1	0	0	0	0	0	0	1	0	95	405	14	4	725	4	ABLIM2	4	8029484	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2387057	8029484	183124792	191	5178											
FGFBP1	9982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15938116	15938116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FGFBP1	NM_005130	exon3	c.A140T	p.Q47L	TTAATCTGGGTGT	.	219	128	149	0	.	90	A	15938116	T	A	15938116	3	1	41	1	0	0	0	0	1	0	0	0	5860	1580	55	4	568	4	FGFBP1	4	15938116	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7908632	15938116	175216160	192	5179											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	20255500	20255500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLIT2	NM_004787	exon1	c.A62G	p.N21S	TCCTGAACAAGGT	.	42	11	17	0	.	521	G	20255500	A	G	20255500	3	3	41	1	0	0	0	0	1	0	0	0	14740	43	2	2	64	2	SLIT2	4	20255500	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4317384	20255500	170898776	193	5180											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	20525440	20525440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLIT2	NM_004787	exon13	c.C1188A	p.H396Q	TCTCCACAACTTG	.	251	15	208	0	.	521	A	20525440	C	A	20525440	3	1	41	1	0	0	0	0	1	0	0	0	14740	477	17	3	1238	3	SLIT2	4	20525440	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	269940	20525440	170628836	194	5181											
SEPSECS	51091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25160667	25160667	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEPSECS	NM_016955	exon2	c.A177C	p.A59A	CATGATTGCAAGT	.	265	154	199	0	.	90	G	25160667	T	G	25160667	2	3	41	1	0	0	0	0	0	0	0	1	14058	1799	63	5		5	SEPSECS	4	25160667	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4635227	25160667	165993609	195	5182											
PDGFRA	5156	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55152024	55152024	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PDGFRA	NM_006206	exon18	c.T2456G	p.L819R	GTGATCTGGCTGC	.	52	21	51	1	.	9497	G	55152024	T	G	55152024	3	3	41	1	0	0	0	0	1	0	0	0	11661	1580	55	5	2522	5	PDGFRA	4	55152024	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	29991357	55152024	136002252	196	5183											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55564702	55564702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIT	NM_000222	exon3	c.C590A	p.S197X	TGCTGTCGGAAAA	.	75	34	100	0	.	20166	A	55564702	C	A	55564702	4	1	41	1	0	0	0	0	0	1	0	0	8329	893	31	1	600	1	KIT	4	55564702	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	412678	55564702	135589574	197	5184											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55973948	55973948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KDR	NM_002253	exon10	c.C1368G	p.I456M	CCAGTGGATGTGA	.	115	43	154	0	.	2298	C	55973948	G	C	55973948	3	2	41	1	0	0	0	0	1	0	0	0	8139	1164	41	4	2786	4	KDR	4	55973948	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	409246	55973948	135180328	198	5185											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57250311	57250311	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AASDH	NM_181806	exon2	c.A155T	p.H52L	TCACAGTGTAACA	.	235	92	253	0	.	94	A	57250311	T	A	57250311	3	1	41	1	0	0	0	0	1	0	0	0	22	1696	59	4	3197	4	AASDH	4	57250311	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1276363	57250311	133903965	199	5186											
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66356415	66356415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon5	c.C1082G	p.P361R	TTCCGAGGAGCAG	.	174	52	207	1	.	1430	C	66356415	G	C	66356415	3	2	41	1	0	0	0	0	1	0	0	0	5170	1000	35	4	2087	4	EPHA5	4	66356415	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	9106104	66356415	124797861	200	5187											
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467379	66467379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon3	c.A890T	p.E297V	TTTTTCTCTTCAT	.	55	23	58	0	.	1430	A	66467379	T	A	66467379	3	1	41	1	0	0	0	0	1	0	0	0	5170	1551	54	4	2287	4	EPHA5	4	66467379	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	110964	66467379	124686897	201	5188											
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467935	66467935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon3	c.T334A	p.W112R	AAAGCCAGTTATT	.	50	22	63	0	.	1430	T	66467935	A	T	66467935	3	4	41	1	0	0	0	0	1	0	0	0	5170	188	7	4	2843	4	EPHA5	4	66467935	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	556	66467935	124686341	202	5189											
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68780363	68780363	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMPRSS11A	NM_182606	exon9	c.T1047C	p.D349D	TTTTATATCATTG	.	235	30	251	0	.	69	G	68780363	A	G	68780363	2	3	41	1	0	0	0	0	0	0	0	1	16236	446	16	2		2	TMPRSS11A	4	68780363	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2312428	68780363	122373913	203	5190											
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68795630	68795630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMPRSS11A	NM_182606	exon5	c.T458C	p.L153S	ATTGGCAAGGCTC	.	165	79	213	0	.	69	G	68795630	A	G	68795630	3	3	41	1	0	0	0	0	1	0	0	0	16236	131	5	2	831	2	TMPRSS11A	4	68795630	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	15267	68795630	122358646	204	5191											
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77675938	77675938	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SHROOM3	NM_020859	exon7	c.C4302T	p.A1434A	GTGGGCCCACGCA	.	151	58	172	1	.	93	T	77675938	C	T	77675938	2	4	41	1	0	0	0	0	0	0	0	1	14295	610	22	3		3	SHROOM3	4	77675938	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	8880308	77675938	113478338	205	5192											
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87732253	87732253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPN13	NM_080685	exon47	c.C7369A	p.Q2457K	ATGGTTCAGACAG	.	42	12	46	0	.	230	A	87732253	C	A	87732253	3	1	41	1	0	0	0	0	1	0	0	0	12782	827	29	3	7551	3	PTPN13	4	87732253	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	10056315	87732253	103422023	206	5193											
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102783820	102783820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BANK1	NM_017935	exon4	c.A762T	p.L254F	AGCTTTAGGTAAG	.	157	64	192	0	.	93	T	102783820	A	T	102783820	3	4	41	1	0	0	0	0	1	0	0	0	1309	434	15	4	776	4	BANK1	4	102783820	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	15051567	102783820	88370456	207	5194											
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110904598	110904598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EGF	NM_001963	exon16	c.A2392G	p.N798D	CTAAAGAACCAAG	.	111	56	121	0	.	524	G	110904598	A	G	110904598	3	3	41	1	0	0	0	0	1	0	0	0	4962	246	9	2	2454	2	EGF	4	110904598	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8120778	110904598	80249678	208	5195											
ANKRD50	57182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125592808	125592808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD50	NM_020337	exon4	c.G1624T	p.D542Y	TTGAATCACACTG	.	141	58	144	1	.	90	A	125592808	C	A	125592808	3	1	41	1	0	0	0	0	1	0	0	0	677	826	29	3	2669	3	ANKRD50	4	125592808	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	14688210	125592808	65561468	209	5196											
MAML3	55534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140651774	140651774	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAML3	NM_018717	exon4	c.C2115A	p.S705S	CACGGAGGACTGC	.	112	65	97	0	.	455	T	140651774	G	T	140651774	2	4	41	1	0	0	0	0	0	0	0	1	9207	987	35	3		3	MAML3	4	140651774	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	15058966	140651774	50502502	210	5197											
ZNF330	27309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	142145639	142145639	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF330	NM_014487	exon3	c.121-2A>T	.	TGTTACAGGAATG	.	354	156	349	0	.	90	T	142145639	A	T	142145639	5	4	41	1	0	0	0	0	0	0	1	0	17845	202	7	4	125	4	ZNF330	4	142145639	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1493865	142145639	49008637	211	5198											
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	142949992	142949992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	INPP4B	NM_003866	exon27	c.G2718T	p.M906I	GAAAGCCATCAGC	.	89	47	115	0	.	228	A	142949992	C	A	142949992	3	1	41	1	0	0	0	0	1	0	0	0	7753	594	21	3	60	3	INPP4B	4	142949992	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	804353	142949992	48204284	212	5199											
MAB21L2	10586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151504564	151504564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAB21L2	NM_006439	exon1	c.T383C	p.I128T	GTAAGATCCGCTC	.	58	20	55	0	.	91	C	151504564	T	C	151504564	3	2	41	1	0	0	0	0	1	0	0	0	9142	1435	50	2	385	2	MAB21L2	4	151504564	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8554572	151504564	39649712	213	5200											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155156385	155156385	+	Missense_Mutation	SNP	T	T	A	rs147174513		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCHS2	NM_017639	exon25	c.A8054T	p.D2685V	AGCTGGTCTGAGT	.	101	44	94	0	T|1.000;A|0.000	94	A	155156385	T	A	155156385	3	1	41	1	0	0	0	0	1	0	0	0	4288	1667	58	4	700	4	DCHS2	4	155156385	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3651821	155156385	35997891	214	5201											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155226268	155226268	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCHS2	NM_017639	exon16	c.A4011G	p.Q1337Q	GACTTCTTGAATT	.	95	37	99	0	.	94	C	155226268	T	C	155226268	2	2	41	1	0	0	0	0	0	0	0	1	4288	1606	56	2		2	DCHS2	4	155226268	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	69883	155226268	35928008	215	5202											
GRIA2	2891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158142912	158142912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIA2	NM_000826	exon2	c.A182G	p.H61R	CACCCCACATCGA	.	125	55	140	2	.	515	G	158142912	A	G	158142912	3	3	41	1	0	0	0	0	1	0	0	0	6768	159	6	2	188	2	GRIA2	4	158142912	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2916644	158142912	33011364	216	5203											
SPOCK3	50859	broad.mit.edu;bcgsc.ca	37	4	168155255	168155255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPOCK3	NM_016950	exon2	c.G70T	p.A24S	CCGCCGCGGCAGC	.	109	42	129	1	.	136	A	168155255	C	A	168155255	3	1	41	1	0	0	0	0	1	0	0	0	15080	768	27	1	1284	1	SPOCK3	4	168155255	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	10012343	168155255	22999021	217	5204											
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186997908	186997908	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TLR3	NM_003265	exon2	c.A135C	p.V45V	TCAGGTACCCGAT	.	105	41	135	0	.	524	C	186997908	A	C	186997908	2	2	41	1	0	0	0	0	0	0	0	1	15949	378	14	5		5	TLR3	4	186997908	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	18842653	186997908	4156368	218	5205											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1409895	1409895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A3	NM_001044	exon10	c.C1339A	p.L447I	TGAAGAGCTCACG	.	51	29	74	0	.	157	T	1409895	G	T	1409895	3	4	41	1	0	0	0	0	1	0	0	0	14685	971	34	3	547	3	SLC6A3	5	1409895	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		1409895	179505365	219	5206											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	3600372	3600372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRX1	NM_024337	exon2	c.C1310A	p.P437Q	CGCTCCCAGGTAC	.	37	17	37	0	.	228	A	3600372	C	A	3600372	3	1	41	1	0	0	0	0	1	0	0	0	7843	594	21	3	1316	3	IRX1	5	3600372	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2190477	3600372	177314888	220	5207											
ADAMTS16	170690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5242253	5242253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS16	NM_139056	exon17	c.A2611T	p.S871C	CAGCCCAGCTACA	.	45	19	74	1	.	275	T	5242253	A	T	5242253	3	4	41	1	0	0	0	0	1	0	0	0	261	188	7	4	2677	4	ADAMTS16	5	5242253	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1641881	5242253	175673007	221	5208											
C5orf22	55322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31534522	31534522	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C5orf22	NM_018356	exon2	c.T225C	p.F75F	ACTCTTTGGGTAA	.	92	23	111	0	.	92	C	31534522	T	C	31534522	2	2	41	1	0	0	0	0	0	0	0	1	2285	1809	63	2		2	C5orf22	5	31534522	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	26292269	31534522	149380738	222	5209											
BRIX1	55299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34922851	34922851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRIX1	NM_018321	exon6	c.G488A	p.R163Q	GTTCTCGGCCCCT	.	381	136	419	0	.	90	A	34922851	G	A	34922851	3	1	41	1	0	0	0	0	1	0	0	0	1515	1116	39	1	510	1	BRIX1	5	34922851	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3388329	34922851	145992409	223	5210											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	37206332	37206332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C5orf42	NM_023073	exon17	c.A3116T	p.Q1039L	AACAGCTGGAAAG	.	306	30	343	0	.	94	A	37206332	T	A	37206332	3	1	41	1	0	0	0	0	1	0	0	0	2301	1580	55	4	6621	4	C5orf42	5	37206332	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2283481	37206332	143708928	224	5211											
WDR70	55100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37721261	37721261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR70	NM_018034	exon14	c.G1461A	p.M487I	GATCATGGTTGGA	.	153	63	176	0	.	187	A	37721261	G	A	37721261	3	1	41	1	0	0	0	0	1	0	0	0	17318	1348	47	3	1515	3	WDR70	5	37721261	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	514929	37721261	143193999	225	5212											
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	59899225	59899225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DEPDC1B	NM_001145208	exon9	c.G1235T	p.R412I	TGGACTCTTCGTA	.	69	22	81	0	.	91	A	59899225	C	A	59899225	3	1	41	1	0	0	0	0	1	0	0	0	4440	913	32	3	366	3	DEPDC1B	5	59899225	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	22177964	59899225	121016035	226	5213											
CARTPT	9607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71016426	71016426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CARTPT	NM_004291	exon3	c.T335C	p.L112P	CCTTCCTCCTGAA	.	88	42	114	0	.	91	C	71016426	T	C	71016426	3	2	41	1	0	0	0	0	1	0	0	0	2659	1551	54	2	345	2	CARTPT	5	71016426	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	11117201	71016426	109898834	227	5214											
MRPS27	23107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71519592	71519592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MRPS27	NM_015084	exon10	c.A923T	p.Q308L	GACCCCTGGTTGT	.	97	48	121	0	.	90	A	71519592	T	A	71519592	3	1	41	1	0	0	0	0	1	0	0	0	9838	1580	55	4	329	4	MRPS27	5	71519592	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	503166	71519592	109395668	228	5215											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72188978	72188978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNPO1	NM_002270	exon16	c.G1801T	p.V601F	TCTTCAGTTGCCA	.	104	45	80	0	.	228	T	72188978	G	T	72188978	3	4	41	1	0	0	0	0	1	0	0	0	16332	1029	36	3	1863	3	TNPO1	5	72188978	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	669386	72188978	108726282	229	5216											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72201205	72201205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNPO1	NM_002270	exon24	c.A2665G	p.K889E	CCCTTAAAAGAGC	.	75	26	77	0	.	228	G	72201205	A	G	72201205	3	3	41	1	0	0	0	0	1	0	0	0	16332	15	1	2	2759	2	TNPO1	5	72201205	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	12227	72201205	108714055	230	5217											
BTF3	689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72798773	72798773	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BTF3	NM_001037637	exon4	c.C348A	p.I116I	AGTGATCCACTTT	.	36	15	42	0	.	90	A	72798773	C	A	72798773	2	1	41	1	0	0	0	0	0	0	0	1	1551	845	30	3		3	BTF3	5	72798773	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	597568	72798773	108116487	231	5218											
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72868323	72868323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UTP15	NM_032175	exon7	c.A683G	p.Y228C	GTCGTTATGTTAA	.	143	56	173	0	.	90	G	72868323	A	G	72868323	3	3	41	1	0	0	0	0	1	0	0	0	17094	449	16	2	705	2	UTP15	5	72868323	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	69550	72868323	108046937	232	5219											
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93989111	93989111	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD32	NM_032290	exon8	c.A1017T	p.I339I	GCACATATATAAT	.	449	201	488	0	.	92	T	93989111	A	T	93989111	2	4	41	1	0	0	0	0	0	0	0	1	660	439	16	4		4	ANKRD32	5	93989111	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	21120788	93989111	86926149	233	5220											
GIN1	54826	ucsc.edu;bcgsc.ca	37	5	102444366	102444366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GIN1	NM_017676	exon2	c.G46A	p.A16T	AATATGCAATCTG	.	81	30	105	2	.	92	T	102444366	C	T	102444366	3	4	41	1	0	0	0	0	1	0	0	0	6386	710	25	3	1550	3	GIN1	5	102444366	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	8455255	102444366	78470894	234	5221											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	128863439	128863439	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS19	NM_133638	exon5	c.1069-2A>T	.	GTTTTTAGGTATT	.	247	104	315	1	.	295	T	128863439	A	T	128863439	5	4	41	1	0	0	0	0	0	0	1	0	264	434	15	4	1085	4	ADAMTS19	5	128863439	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	26419073	128863439	52051821	235	5222											
CHSY3	337876	ucsc.edu;bcgsc.ca	37	5	129243821	129243821	+	Missense_Mutation	SNP	A	A	T	rs146180146	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHSY3	NM_175856	exon2	c.A854T	p.Y285F	CTCTCTACCTGGG	.	146	68	147	2	A|0.999;T|0.001	25	T	129243821	A	T	129243821	3	4	41	1	0	0	0	0	1	0	0	0	3413	391	14	4	860	4	CHSY3	5	129243821	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	380382	129243821	51671439	236	5223											
SLC22A4	6583	broad.mit.edu;bcgsc.ca	37	5	131647952	131647952	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC22A4	NM_003059	exon2	c.A492G	p.S164S	GCTGTCAGACAGG	.	61	5	106	0	.	90	G	131647952	A	G	131647952	2	3	41	1	0	0	0	0	0	0	0	1	14456	175	7	2		2	SLC22A4	5	131647952	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2404131	131647952	49267308	237	5224											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137284750	137284750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001101800	exon17	c.A1988G	p.K663R	ATGACCTTGGGTT	.	77	35	63	0	.	.	C	137284750	T	C	137284750	3	2	41	1	0	0	0	0	1	0	0	0	5453	1609	56	2	787	2	FAM13B	5	137284750	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5636798	137284750	43630510	238	5225											
PCDHA3	56145	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140183244	140183244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHA3	NM_031497	exon1	c.T2462A	p.L821Q	CTCCTCTGGAAAT	.	93	36	82	1	.	98	A	140183244	T	A	140183244	3	1	41	1	0	0	0	0	1	0	0	0	11525	1580	55	4	2464	4	PCDHA3	5	140183244	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2898494	140183244	40732016	239	5226											
PCDHA5	56143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140202294	140202294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHA5	NM_018908	exon1	c.T934G	p.Y312D	GAAGACTATAACT	.	147	60	150	1	.	137	G	140202294	T	G	140202294	3	3	41	1	0	0	0	0	1	0	0	0	11527	1522	53	5	936	5	PCDHA5	5	140202294	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	19050	140202294	40712966	240	5227											
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140308412	140308412	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHAC1	NM_031882	exon1	c.A1935G	p.P645P	CCCACCACTTTCC	.	74	23	74	0	.	28	G	140308412	A	G	140308412	2	3	41	1	0	0	0	0	0	0	0	1	11532	146	6	2		2	PCDHAC1	5	140308412	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	106118	140308412	40606848	241	5228											
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140531986	140531986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB6	NM_018939	exon1	c.G2148T	p.R716S	GAGCAGGGCGGCC	.	45	22	57	0	.	91	T	140531986	G	T	140531986	3	4	41	1	0	0	0	0	1	0	0	0	11546	1223	43	3	2150	3	PCDHB6	5	140531986	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	223574	140531986	40383274	242	5229											
PCDHB7	56129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140553027	140553027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB7	NM_018940	exon1	c.A611T	p.E204V	GGGAAGAGATACC	.	168	91	161	0	.	95	T	140553027	A	T	140553027	3	4	41	1	0	0	0	0	1	0	0	0	11547	304	11	4	613	4	PCDHB7	5	140553027	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	21041	140553027	40362233	243	5230											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140572771	140572771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB10	NM_018930	exon1	c.G646T	p.D216Y	GCGCTGGATGGTG	.	133	51	147	0	.	92	T	140572771	G	T	140572771	3	4	41	1	0	0	0	0	1	0	0	0	11535	1174	41	3	648	3	PCDHB10	5	140572771	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	19744	140572771	40342489	244	5231											
PCDHGA3	56112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140723872	140723872	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHGA3	NM_032011	exon1	c.A272C	p.D91A	GGATAGACCGGGA	.	142	54	164	1	.	68	C	140723872	A	C	140723872	3	2	41	1	0	0	0	0	1	0	0	0	11555	275	10	5	274	5	PCDHGA3	5	140723872	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	151101	140723872	40191388	245	5232											
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145239349	145239349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRXCR2	NM_001080516	exon3	c.T694A	p.C232S	CAGGGCACCTCAG	.	213	11	258	0	.	22	T	145239349	A	T	145239349	3	4	41	1	0	0	0	0	1	0	0	0	6813	159	6	4	56	4	GRXCR2	5	145239349	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4515477	145239349	35675911	246	5233											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150930189	150930189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAT2	NM_001447	exon7	c.C4540T	p.L1514F	AGCCGAGGTCCAA	.	68	29	79	0	.	96	A	150930189	G	A	150930189	3	1	41	1	0	0	0	0	1	0	0	0	5690	1000	35	3	8577	3	FAT2	5	150930189	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5690840	150930189	29985071	247	5234											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154311783	154311783	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GEMIN5	NM_015465	exon4	c.T537C	p.I179I	GATGTCAATTATC	.	158	70	155	0	.	228	G	154311783	A	G	154311783	2	3	41	1	0	0	0	0	0	0	0	1	6331	126	5	2		2	GEMIN5	5	154311783	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3381594	154311783	26603477	248	5235											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156590341	156590341	+	Missense_Mutation	SNP	G	G	T	rs200982218	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM71B	NM_130899	exon2	c.C935A	p.A312E	GCCAGCGCTGTGG	.	53	29	52	0	G|0.999;A|0.000	96	T	156590341	G	T	156590341	3	4	41	1	0	0	0	0	1	0	0	0	5608	1087	38	1	886	1	FAM71B	5	156590341	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2278558	156590341	24324919	249	5236											
ADRA1B	147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159344340	159344340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADRA1B	NM_000679	exon1	c.G428A	p.R143H	TCGATCGCTACAT	.	56	25	60	0	.	522	A	159344340	G	A	159344340	3	1	41	1	0	0	0	0	1	0	0	0	335	1087	38	1	430	1	ADRA1B	5	159344340	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2753999	159344340	21570920	250	5237											
HMMR	3161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	162900512	162900512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HMMR	NM_001142556	exon9	c.A853G	p.K285E	TTATCTAAACAAG	.	313	136	349	2	.	90	G	162900512	A	G	162900512	3	3	41	1	0	0	0	0	1	0	0	0	7242	363	13	2	887	2	HMMR	5	162900512	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3556172	162900512	18014748	251	5238											
STK10	6793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	171509351	171509351	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STK10	NM_005990	exon12	c.G1968A	p.Q656Q	TTTGAGCTGCTCT	.	67	27	100	0	.	1022	T	171509351	C	T	171509351	2	4	41	1	0	0	0	0	0	0	0	1	15285	796	28	3		3	STK10	5	171509351	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	8608839	171509351	9405909	252	5239											
HRH2	3274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175112498	175112498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HRH2	NM_001131055	exon3	c.A1163T	p.H388L	ACATTCATCCAAT	.	207	87	284	1	.	91	T	175112498	A	T	175112498	3	4	41	1	0	0	0	0	1	0	0	0	7356	217	8	4	1173	4	HRH2	5	175112498	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3603147	175112498	5802762	253	5240											
DBN1	1627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176886227	176886227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DBN1	NM_080881	exon12	c.T1004C	p.I335T	GTGGGGATGGGAG	.	26	6	26	0	.	587	G	176886227	A	G	176886227	3	3	41	1	0	0	0	0	1	0	0	0	4252	333	12	2	967	2	DBN1	5	176886227	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1773729	176886227	4029033	254	5241											
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178548746	178548746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS2	NM_014244	exon21	c.A3094T	p.I1032F	CTGAGATGTTTCC	.	67	23	84	0	.	228	A	178548746	T	A	178548746	3	1	41	1	0	0	0	0	1	0	0	0	265	1464	51	4	549	4	ADAMTS2	5	178548746	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1662519	178548746	2366514	255	5242											
TUBB2B	347733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	3227741	3227741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TUBB2B	NM_178012	exon1	c.G37T	p.G13C	GGTTGCCGCACTG	.	37	11	21	0	.	153	A	3227741	C	A	3227741	3	1	41	1	0	0	0	0	1	0	0	0	16752	652	23	1	1316	1	TUBB2B	6	3227741	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10		3227741	167887326	256	5243											
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4057278	4057278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRPF4B	NM_003913	exon13	c.A2590G	p.K864E	ATAGGTAAAAGCT	.	122	25	64	0	.	1308	G	4057278	A	G	4057278	3	3	41	1	0	0	0	0	1	0	0	0	12573	363	13	2	2640	2	PRPF4B	6	4057278	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	829537	4057278	167057789	257	5244											
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7556029	7556029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSP	NM_004415	exon2	c.G249T	p.M83I	CTTGATGCGAGCA	.	183	38	134	2	.	518	T	7556029	G	T	7556029	3	4	41	1	0	0	0	0	1	0	0	0	4781	1319	46	3	255	3	DSP	6	7556029	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3498751	7556029	163559038	258	5245											
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7581019	7581019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSP	NM_004415	exon23	c.G4596T	p.E1532D	TCAGGAGCAAGAA	.	275	73	115	1	.	518	T	7581019	G	T	7581019	3	4	41	1	0	0	0	0	1	0	0	0	4781	962	34	3	4686	3	DSP	6	7581019	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	24990	7581019	163534048	259	5246											
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7581656	7581656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSP	NM_004415	exon23	c.A5233G	p.K1745E	AGTGATAAAAATG	.	330	72	197	1	.	518	G	7581656	A	G	7581656	3	3	41	1	0	0	0	0	1	0	0	0	4781	363	13	2	5323	2	DSP	6	7581656	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	637	7581656	163533411	260	5247											
EEF1E1	9521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	8097609	8097609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EEF1E1	NM_001135650	exon2	c.T179C	p.L60S	CCCAGCAAATATT	.	227	60	150	0	.	186	G	8097609	A	G	8097609	3	3	41	1	0	0	0	0	1	0	0	0	4927	131	5	2	397	2	EEF1E1	6	8097609	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	515953	8097609	163017458	261	5248											
EDN1	1906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12290873	12290873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EDN1	NM_001955	exon1	c.T11G	p.L4W	ATTATTTGCTCAT	.	156	37	80	1	.	91	G	12290873	T	G	12290873	3	3	41	1	0	0	0	0	1	0	0	0	4916	1821	63	5	13	5	EDN1	6	12290873	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4193264	12290873	158824194	262	5249											
SIRT5	23408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13588600	13588600	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIRT5	NM_012241	exon4	c.G153A	p.K51K	AGCAAAGCACATA	.	367	86	173	0	.	228	A	13588600	G	A	13588600	2	1	41	1	0	0	0	0	0	0	0	1	14341	962	34	3		3	SIRT5	6	13588600	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1297727	13588600	157526467	263	5250											
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	17706588	17706588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUP153	NM_005124	exon1	c.G31T	p.G11C	CACCGCCCCCTCC	.	87	9	57	0	.	637	A	17706588	C	A	17706588	3	1	41	1	0	0	0	0	1	0	0	0	10755	623	22	3	4484	3	NUP153	6	17706588	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4117988	17706588	153408479	264	5251											
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22287693	22287693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRL	NM_000948	exon5	c.C622A	p.H208N	TTTTATGTGAATC	.	143	43	63	0	.	90	T	22287693	G	T	22287693	3	4	41	1	0	0	0	0	1	0	0	0	12528	1377	48	3	65	3	PRL	6	22287693	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4581105	22287693	148827374	265	5252											
HIST1H3D	8351	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26197264	26197264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIST1H3D	NM_003530	exon2	c.T215G	p.V72G	TCACGGACTAGAC	.	339	64	192	1	.	90	C	26197264	A	C	26197264	3	2	41	1	0	0	0	0	1	0	0	0	7158	275	10	5	199	5	HIST1H3D	6	26197264	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3909571	26197264	144917803	266	5253											
HIST1H2BJ	8970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27100194	27100194	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIST1H2BJ	NM_021058	exon1	c.G336T	p.V112V	CTCGGACACGGCG	.	174	34	93	0	.	90	A	27100194	C	A	27100194	2	1	41	1	0	0	0	0	0	0	0	1	7149	465	17	3		3	HIST1H2BJ	6	27100194	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	902930	27100194	144014873	267	5254											
PRSS16	10279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27216671	27216671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRSS16	NM_005865	exon3	c.A283T	p.I95L	GGACCCATATTCC	.	295	57	220	2	.	94	T	27216671	A	T	27216671	3	4	41	1	0	0	0	0	1	0	0	0	12616	217	8	4	293	4	PRSS16	6	27216671	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	116477	27216671	143898396	268	5255											
ZSCAN23	222696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28402633	28402633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZSCAN23	NM_001012455	exon4	c.A779G	p.Q260R	GAATTCTGGGTGA	.	275	66	148	0	.	68	C	28402633	T	C	28402633	3	2	41	1	0	0	0	0	1	0	0	0	18232	1580	55	2	394	2	ZSCAN23	6	28402633	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1185962	28402633	142712434	269	5256											
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28962885	28962885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF311	NM_001010877	exon7	c.A1894G	p.R632G	GTTTTCTTTTCTT	.	208	38	130	0	.	22	C	28962885	T	C	28962885	3	2	41	1	0	0	0	0	1	0	0	0	17831	1617	56	2	110	2	ZNF311	6	28962885	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	560252	28962885	142152182	270	5257											
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29591692	29591692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABBR1	NM_001470	exon7	c.C767A	p.A256D	CTAGCAGCCTCAG	.	278	57	215	0	.	521	T	29591692	G	T	29591692	3	4	41	1	0	0	0	0	1	0	0	0	6155	971	34	3	2186	3	GABBR1	6	29591692	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	628807	29591692	141523375	271	5258											
GABBR1	2550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29599361	29599361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABBR1	NM_021904	exon3	c.A101T	p.H34L	GGCGGGTGTATGA	.	160	37	136	1	.	521	A	29599361	T	A	29599361	3	1	41	1	0	0	0	0	1	0	0	0	6155	1696	59	4	3013	4	GABBR1	6	29599361	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7669	29599361	141515706	272	5259											
DPCR1	135656	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917770	30917770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPCR1	NM_080870	exon2	c.A1529G	p.E510G	CCAATGAGAAAAC	.	182	52	120	1	.	90	G	30917770	A	G	30917770	3	3	41	1	0	0	0	0	1	0	0	0	4712	304	11	2	1535	2	DPCR1	6	30917770	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1318409	30917770	140197297	273	5260											
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30955854	30955854	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC21	NM_001010909	exon3	c.A1584C	p.P528P	TGGTCCAGGCCCT	.	255	42	189	0	.	92	C	30955854	A	C	30955854	2	2	41	1	0	0	0	0	0	0	0	1	9977	175	7	5		5	MUC21	6	30955854	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	38084	30955854	140159213	274	5261											
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	31627616	31627616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C6orf47	NM_021184	exon1	c.G109T	p.E37X	AATTCTCCGAGGA	.	247	47	163	0	.	91	A	31627616	C	A	31627616	4	1	41	1	0	0	0	0	0	1	0	0	2364	864	30	3	779	3	C6orf47	6	31627616	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	671762	31627616	139487451	275	5262											
C6orf25	80739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31691511	31691511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C6orf25	NM_138277	exon2	c.T157C	p.C53R	CCGGCCTGCAAGG	.	90	16	75	1	.	90	C	31691511	T	C	31691511	3	2	41	1	0	0	0	0	1	0	0	0	2360	1580	55	2	163	2	C6orf25	6	31691511	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	63895	31691511	139423556	276	5263											
HSPA1L	3305	broad.mit.edu;ucsc.edu	37	6	31779395	31779395	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HSPA1L	NM_005527	exon2	c.G355T	p.E119X	TTTCCTCAGGGTA	.	563	140	332	2	.	230	A	31779395	C	A	31779395	4	1	41	1	0	0	0	0	0	1	0	0	7410	835	29	3	1574	3	HSPA1L	6	31779395	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	87884	31779395	139335672	277	5264											
SLC44A4	80736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31839119	31839119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC44A4	NM_025257	exon9	c.T673G	p.F225V	GGGCAAAATCTTC	.	168	7	117	0	.	156	C	31839119	A	C	31839119	3	2	41	1	0	0	0	0	1	0	0	0	14638	14	1	5	1511	5	SLC44A4	6	31839119	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	59724	31839119	139275948	278	5265											
HLA-DMB	3109	broad.mit.edu;bcgsc.ca	37	6	32905064	32905064	+	Silent	SNP	A	A	G	rs147622332		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HLA-DMB	NM_002118	exon3	c.T507C	p.N169N	GTCTCCATTGGGC	.	450	74	256	1	A|1.000;G|0.000	90	G	32905064	A	G	32905064	2	3	41	1	0	0	0	0	0	0	0	1	7199	214	8	2		2	HLA-DMB	6	32905064	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1065945	32905064	138210003	279	5266											
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33646238	33646238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITPR3	NM_002224	exon29	c.A3689G	p.Q1230R	CGCACCAGTTCCT	.	289	82	191	1	.	1085	G	33646238	A	G	33646238	3	3	41	1	0	0	0	0	1	0	0	0	7922	188	7	2	3803	2	ITPR3	6	33646238	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	741174	33646238	137468829	280	5267											
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34003458	34003458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM4	NM_000841	exon9	c.A2429T	p.Q810L	GCCGACTGCGAGG	.	377	69	228	0	.	525	A	34003458	T	A	34003458	3	1	41	1	0	0	0	0	1	0	0	0	6799	1580	55	4	321	4	GRM4	6	34003458	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	357220	34003458	137111609	281	5268											
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35260758	35260758	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF76	NM_003427	exon11	c.G1266T	p.A422A	GGTGGCGATGGTG	.	239	58	160	0	.	90	T	35260758	G	T	35260758	2	4	41	1	0	0	0	0	0	0	0	1	18132	1045	37	1		1	ZNF76	6	35260758	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1257300	35260758	135854309	282	5269											
BRPF3	27154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36169160	36169160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRPF3	NM_015695	exon2	c.A1061C	p.Q354P	GTGCACAGCGGGC	.	131	21	89	0	.	92	C	36169160	A	C	36169160	3	2	41	1	0	0	0	0	1	0	0	0	1521	188	7	5	1063	5	BRPF3	6	36169160	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	908402	36169160	134945907	283	5270											
PNPLA1	285848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36238348	36238348	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PNPLA1	NM_001145717	exon1	c.C112T	p.L38L	CGGGACCTGGCCC	.	401	111	250	2	.	137	T	36238348	C	T	36238348	2	4	41	1	0	0	0	0	0	0	0	1	12164	680	24	3		3	PNPLA1	6	36238348	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	69188	36238348	134876719	284	5271											
RNF8	9025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37349083	37349083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF8	NM_003958	exon7	c.G1394T	p.S465I	ATCTGAGCTCAGA	.	194	40	127	1	.	227	T	37349083	G	T	37349083	3	4	41	1	0	0	0	0	1	0	0	0	13500	971	34	3	1420	3	RNF8	6	37349083	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1110735	37349083	133765984	285	5272											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38994404	38994404	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH8	NM_001206927	exon92	c.T13797A	p.V4599V	TGAAGTTCTGAGA	.	81	20	61	0	.	615	A	38994404	T	A	38994404	2	1	41	1	0	0	0	0	0	0	0	1	4607	1770	62	4		4	DNAH8	6	38994404	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1645321	38994404	132120663	286	5273											
GLP1R	2740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39040691	39040691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GLP1R	NM_002062	exon6	c.T563A	p.I188N	CCTTCATCCTGCG	.	146	42	92	0	.	659	A	39040691	T	A	39040691	3	1	41	1	0	0	0	0	1	0	0	0	6452	1435	50	4	585	4	GLP1R	6	39040691	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	46287	39040691	132074376	287	5274											
KIF6	221458	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39387773	39387773	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF6	NM_145027	exon15	c.T1761A	p.S587S	GGCTTCAGAAAAT	.	170	37	98	1	.	713	T	39387773	A	T	39387773	2	4	41	1	0	0	0	0	0	0	0	1	8308	175	7	4		4	KIF6	6	39387773	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	347082	39387773	131727294	288	5275											
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41739273	41739273	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FRS3	NM_006653	exon8	c.565-2A>T	.	TGGGACTGGGGAA	.	37	11	16	0	.	92	A	41739273	T	A	41739273	5	1	41	1	0	0	0	0	0	0	1	0	6062	1594	55	4	919	4	FRS3	6	41739273	Splice_Site	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2351500	41739273	129375794	289	5276											
PTK7	5754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43109672	43109672	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTK7	NM_001270398	exon12	c.T1796A	p.F599Y	CAGTTTTTATCAC	.	88	27	49	0	.	1493	A	43109672	T	A	43109672	3	1	41	1	0	0	0	0	1	0	0	0	12765	1841	64	4	1818	4	PTK7	6	43109672	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1370399	43109672	128005395	290	5277											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155101	43155101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CUL9	NM_015089	exon6	c.T1505C	p.L502P	GGGAGCTGCTTTT	.	187	25	110	0	.	529	C	43155101	T	C	43155101	3	2	41	1	0	0	0	0	1	0	0	0	4061	1580	55	2	1523	2	CUL9	6	43155101	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	45429	43155101	127959966	291	5278											
POLH	5429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43555153	43555153	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POLH	NM_006502	exon4	c.A417T	p.A139A	CTCGGCAGACTTG	.	296	83	187	1	.	290	T	43555153	A	T	43555153	2	4	41	1	0	0	0	0	0	0	0	1	12202	175	7	4		4	POLH	6	43555153	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	400052	43555153	127559914	292	5279											
GPR116	221395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46826559	46826559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR116	NM_015234	exon17	c.G3081T	p.L1027F	GGCTGCCAAGCTC	.	148	42	100	1	.	91	A	46826559	C	A	46826559	3	1	41	1	0	0	0	0	1	0	0	0	6633	593	21	3	979	3	GPR116	6	46826559	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3271406	46826559	124288508	293	5280											
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46976727	46976727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR110	NM_153840	exon11	c.A2444T	p.Q815L	AGATTCTGGCTGT	.	457	122	275	0	.	71	A	46976727	T	A	46976727	3	1	41	1	0	0	0	0	1	0	0	0	6627	1580	55	4	308	4	GPR110	6	46976727	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	150168	46976727	124138340	294	5281											
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54804890	54804890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM83B	NM_001010872	exon5	c.A1121T	p.Q374L	TACGTCAGTTTCA	.	409	95	239	0	.	96	T	54804890	A	T	54804890	3	4	41	1	0	0	0	0	1	0	0	0	5634	188	7	4	1135	4	FAM83B	6	54804890	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	7828163	54804890	116310177	295	5282											
FAM83B	222584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	54805800	54805800	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM83B	NM_001010872	exon5	c.T2031C	p.P677P	AGATCCTGGAAAT	.	534	118	279	2	.	96	C	54805800	T	C	54805800	2	2	41	1	0	0	0	0	0	0	0	1	5634	1567	55	2		2	FAM83B	6	54805800	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	910	54805800	116309267	296	5283											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	56328485	56328485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DST	NM_015548	exon81	c.C14896T	p.R4966X	GGGGTCGGAAAGC	.	168	30	83	0	.	523	A	56328485	G	A	56328485	4	1	41	1	0	0	0	0	0	1	0	0	4783	1124	39	1	635	1	DST	6	56328485	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1522685	56328485	114786582	297	5284											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56497806	56497806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DST	NM_001723	exon14	c.G2040T	p.Q680H	AACTTGCTGATGT	.	136	26	94	0	.	523	A	56497806	C	A	56497806	3	1	41	1	0	0	0	0	1	0	0	0	4783	796	28	3	18399	3	DST	6	56497806	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	169321	56497806	114617261	298	5285											
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56917944	56917944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1586	NM_020931	exon4	c.A647G	p.H216R	AAGCCCATGGTAA	.	260	61	128	0	.	44	G	56917944	A	G	56917944	3	3	41	1	0	0	0	0	1	0	0	0	8245	217	8	2	661	2	KIAA1586	6	56917944	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	420138	56917944	114197123	299	5286											
ZNF451	26036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	57011970	57011970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF451	NM_001031623	exon10	c.T1087A	p.Y363N	AGAGGTTATTGTC	.	345	65	169	1	.	93	A	57011970	T	A	57011970	3	1	41	1	0	0	0	0	1	0	0	0	17919	1754	61	4	1125	4	ZNF451	6	57011970	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	94026	57011970	114103097	300	5287	34	2									
ZNF451	26036	ucsc.edu;bcgsc.ca	37	6	57011971	57011971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF451	NM_001031623	exon10	c.A1088T	p.Y363F	GAGGTTATTGTCC	.	345	64	170	2	.	93	T	57011971	A	T	57011971	3	4	41	1	0	0	0	0	1	0	0	0	17919	449	16	4	1126	4	ZNF451	6	57011971	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1	57011971	114103096	301	5288	34	2									
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	63990332	63990334	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LGSN	NM_016571	exon4	c.1122_1124del	p.374_375del	TTCAGGTCTTTCC	.	78	39	75	0	.	227	-	63990334	TCT	-	63990332	7	5	41	1	0	1	0	1	0	0	0	0	8759	1667	58	0	409	0	LGSN	6	63990332	In_Frame_Del	DEL	TCT	TCGA-CC-A7IH-01A-11D-A33K-10	6978361	63990332	107124735	302	5289											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64389990	64389990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHF3	NM_015153	exon2	c.A334T	p.R112W	CCTAACAGGAACT	.	124	60	149	0	.	229	T	64389990	A	T	64389990	3	4	41	1	0	0	0	0	1	0	0	0	11836	179	7	4	340	4	PHF3	6	64389990	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	399658	64389990	106725077	303	5290											
LMBRD1	55788	hgsc.bcm.edu;bcgsc.ca	37	6	70411411	70411411	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LMBRD1	NM_018368	exon11	c.1007delG	p.G336fs	TCTATTCCAGCTG	.	242	99	213	0	.	91	-	70411411	C	-	70411411	7	5	41	1	0	1	0	1	0	0	0	0	8842	855	30	0	639	0	LMBRD1	6	70411411	Frame_Shift_Del	DEL	C	TCGA-CC-A7IH-01A-11D-A33K-10	6021421	70411411	100703656	304	5291											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72892030	72892030	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RIMS1	NM_014989	exon6	c.C856G	p.L286V	GGAGCCCTGAAGA	.	279	128	295	0	.	144	G	72892030	C	G	72892030	3	3	41	1	0	0	0	0	1	0	0	0	13367	680	24	4	878	4	RIMS1	6	72892030	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2480619	72892030	98223037	305	5292											
IMPG1	3617	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76744355	76744355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IMPG1	NM_001563	exon3	c.C451A	p.L151M	GATCCAGGTGCTC	.	102	30	105	1	.	93	T	76744355	G	T	76744355	3	4	41	1	0	0	0	0	1	0	0	0	7728	991	35	3	2002	3	IMPG1	6	76744355	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3852325	76744355	94370712	306	5293											
TTK	7272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80746315	80746315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTK	NM_003318	exon17	c.A2048G	p.Q683R	ATTCTCAGGTAAG	.	104	39	87	0	.	1299	G	80746315	A	G	80746315	3	3	41	1	0	0	0	0	1	0	0	0	16717	202	7	2	2110	2	TTK	6	80746315	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4001960	80746315	90368752	307	5294											
TPBG	7162	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	83074944	83074944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPBG	NM_001166392	exon2	c.T266A	p.L89Q	CGGACCTGCCCGC	.	24	8	39	0	.	514	A	83074944	T	A	83074944	3	1	41	1	0	0	0	0	1	0	0	0	16391	1580	55	4	268	4	TPBG	6	83074944	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2328629	83074944	88040123	308	5295											
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	88757710	88757710	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPACA1	NM_030960	exon1	c.G87A	p.G29G	GCGCGGGACCAAC	.	119	51	114	0	.	90	A	88757710	G	A	88757710	2	1	41	1	0	0	0	0	0	0	0	1	14972	1161	41	3		3	SPACA1	6	88757710	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5682766	88757710	82357357	309	5296											
RTN4IP1	84816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107076839	107076839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RTN4IP1	NM_032730	exon1	c.T58C	p.W20R	TTCTCCAGAAGCA	.	76	36	78	0	.	90	G	107076839	A	G	107076839	3	3	41	1	0	0	0	0	1	0	0	0	13729	188	7	2	1168	2	RTN4IP1	6	107076839	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	18319129	107076839	64038228	310	5297											
DSE	29940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116757673	116757673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSE	NM_001080976	exon6	c.A2042T	p.Q681L	ACTCTCAGCAACT	.	118	55	110	0	.	91	T	116757673	A	T	116757673	3	4	41	1	0	0	0	0	1	0	0	0	4774	188	7	4	2060	4	DSE	6	116757673	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	9680834	116757673	54357394	311	5298											
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119136767	119136767	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MCM9	NM_017696	exon12	c.A2652G	p.P884P	TCTGTCTGGGCTA	.	47	17	84	0	.	515	C	119136767	T	C	119136767	2	2	41	1	0	0	0	0	0	0	0	1	9394	1595	55	2		2	MCM9	6	119136767	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2379094	119136767	51978300	312	5299											
CLVS2	134829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	123319264	123319264	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLVS2	NM_001010852	exon2	c.T342C	p.Y114Y	CCACTATGGCAGG	.	76	28	95	0	.	27	C	123319264	T	C	123319264	2	2	41	1	0	0	0	0	0	0	0	1	3572	1471	51	2		2	CLVS2	6	123319264	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4182497	123319264	47795803	313	5300											
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132006562	132006562	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENPP3	NM_005021	exon13	c.A1179T	p.I393I	CAGAATAAACTTC	.	186	88	211	0	.	95	T	132006562	A	T	132006562	2	4	41	1	0	0	0	0	0	0	0	1	5131	352	13	4		4	ENPP3	6	132006562	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8687298	132006562	39108505	314	5301											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152765648	152765648	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYNE1	NM_033071	exon30	c.C3756A	p.L1252L	TTCTTCGAGAGAA	.	60	33	101	0	.	607	T	152765648	G	T	152765648	2	4	41	1	0	0	0	0	0	0	0	1	15442	1045	37	1		1	SYNE1	6	152765648	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	20759086	152765648	18349419	315	5302											
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	159654905	159654905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FNDC1	NM_032532	exon11	c.G3361T	p.A1121S	GCAGGGGCAGGTG	.	53	32	44	0	.	138	T	159654905	G	T	159654905	3	4	41	1	0	0	0	0	1	0	0	0	5968	1203	42	3	3403	3	FNDC1	6	159654905	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	6889257	159654905	11460162	316	5303											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	1513873	1513873	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001080453	exon41	c.G5760T	p.P1920P	CACGTGCGGCTGC	.	21	11	19	0	.	.	A	1513873	C	A	1513873	2	1	41	1	0	0	0	0	0	0	0	1	7775	755	27	1		1	INTS1	7	1513873	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10		1513873	157624790	317	5304											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2968233	2968233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CARD11	NM_032415	exon13	c.A1753T	p.S585C	CCCACCTGCGATG	.	28	9	30	0	.	870	A	2968233	T	A	2968233	3	1	41	1	0	0	0	0	1	0	0	0	2645	1594	55	4	1763	4	CARD11	7	2968233	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1454360	2968233	156170430	318	5305											
RNF216	54476	broad.mit.edu;bcgsc.ca	37	7	5756357	5756357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF216	NM_207111	exon10	c.A1685C	p.Q562P	TGATACTGTTCTT	.	89	6	127	0	.	274	G	5756357	T	G	5756357	3	3	41	1	0	0	0	0	1	0	0	0	13480	1580	55	5	1118	5	RNF216	7	5756357	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2788124	5756357	153382306	319	5306											
PRPS1L1	221823	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	18066634	18066634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRPS1L1	NM_175886	exon1	c.A772G	p.I258V	GAGAAATGGCTGG	.	147	11	173	1	.	1	C	18066634	T	C	18066634	3	2	41	1	0	0	0	0	1	0	0	0	12579	1464	51	2	188	2	PRPS1L1	7	18066634	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	12310277	18066634	141072029	320	5307											
HDAC9	9734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	18705951	18705951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HDAC9	NM_178425	exon11	c.A1583G	p.N528S	GTGGCAACAGCAC	.	110	39	111	1	.	227	G	18705951	A	G	18705951	3	3	41	1	0	0	0	0	1	0	0	0	7014	43	2	2	1625	2	HDAC9	7	18705951	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	639317	18705951	140432712	321	5308											
DBNL	28988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44096470	44096470	+	Missense_Mutation	SNP	C	C	A	rs145524590	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DBNL	NM_001122956	exon5	c.C442A	p.R148S	AGTGGCCGCTTCC	.	90	13	81	0	C|1.000;T|0.000	91	A	44096470	C	A	44096470	3	1	41	1	0	0	0	0	1	0	0	0	4255	652	23	1	460	1	DBNL	7	44096470	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	25390519	44096470	115042193	322	5309											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47342734	47342734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNS3	NM_022748	exon22	c.A3271T	p.T1091S	GCAGGGTCACACC	.	100	11	112	0	.	94	A	47342734	T	A	47342734	3	1	41	1	0	0	0	0	1	0	0	0	16341	1667	58	4	1106	4	TNS3	7	47342734	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3246264	47342734	111795929	323	5310											
ABCA13	154664	ucsc.edu;bcgsc.ca	37	7	48634410	48634410	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA13	NM_152701	exon58	c.14744+1G>A	.	CCACAGGTGAGTT	.	182	73	214	2	.	521	A	48634410	G	A	48634410	5	1	41	1	0	0	0	0	0	0	1	0	31	1275	44	3	14804	3	ABCA13	7	48634410	Splice_Site	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1291676	48634410	110504253	324	5311											
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50467947	50467947	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IKZF1	NM_006060	exon8	c.C1182T	p.C394C	CAGCTGCCAAGAC	.	87	43	115	0	.	1242	T	50467947	C	T	50467947	2	4	41	1	0	0	0	0	0	0	0	1	7614	747	26	3		3	IKZF1	7	50467947	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1833537	50467947	108670716	325	5312											
ZNF479	90827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	57188114	57188115	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	.	.	.	p.W336F	TGAGGACCAGCTA	.	188	67	202	0	.	.	AA	57188115	CC	AA	57188114	3	1	41	1	0	0	0	0	1	0	0	0	17930	508	18	3	570	3	ZNF479	7	57188114	Missense_Mutation	DNP	CC	TCGA-CC-A7IH-01A-11D-A33K-10	6720167	57188114	101950549	326	5313											
DTX2	113878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	76112438	76112438	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DTX2	NM_001102596	exon2	c.A882T	p.P294P	GCCCCCAGGATCC	.	143	55	154	0	.	524	T	76112438	A	T	76112438	2	4	41	1	0	0	0	0	0	0	0	1	4794	175	7	4		4	DTX2	7	76112438	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	18924324	76112438	83026225	327	5314											
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81714106	81714106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA2D1	NM_000722	exon7	c.G637T	p.G213C	CTAGGCCAGTGGC	.	263	114	302	0	.	96	A	81714106	C	A	81714106	3	1	41	1	0	0	0	0	1	0	0	0	2548	594	21	3	2770	3	CACNA2D1	7	81714106	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5601668	81714106	77424557	328	5315											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82467649	82467649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon15	c.A14107G	p.N4703D	CATAGTTAATTTG	.	66	22	72	0	.	29	C	82467649	T	C	82467649	3	2	41	1	0	0	0	0	1	0	0	0	11583	1754	61	2	1382	2	PCLO	7	82467649	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	753543	82467649	76671014	329	5316											
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82580709	82580709	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon6	c.A9195T	p.T3065T	TCTTGCTGTGGAA	.	93	45	125	1	.	29	A	82580709	T	A	82580709	2	1	41	1	0	0	0	0	0	0	0	1	11583	1567	55	4		4	PCLO	7	82580709	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	113060	82580709	76557954	330	5317											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82581285	82581285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon5	c.C8984A	p.S2995Y	GTGTCAGACATGG	.	168	85	161	0	.	29	T	82581285	G	T	82581285	3	4	41	1	0	0	0	0	1	0	0	0	11583	942	33	3	6545	3	PCLO	7	82581285	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	576	82581285	76557378	331	5318											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764725	82764725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon3	c.G2141T	p.G714V	GGAGAGCCATGAA	.	151	71	167	0	.	29	A	82764725	C	A	82764725	3	1	41	1	0	0	0	0	1	0	0	0	11583	739	26	3	13396	3	PCLO	7	82764725	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	183440	82764725	76373938	332	5319											
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86416372	86416372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM3	NM_000840	exon3	c.A1264G	p.M422V	GATGCTATGAAGA	.	89	9	135	0	.	528	G	86416372	A	G	86416372	3	3	41	1	0	0	0	0	1	0	0	0	6798	449	16	2	1270	2	GRM3	7	86416372	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3651647	86416372	72722291	333	5320											
FZD1	8321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90895564	90895564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD1	NM_003505	exon1	c.A1369G	p.I457V	CCGGCCATCAAGA	.	56	20	57	0	.	658	G	90895564	A	G	90895564	3	3	41	1	0	0	0	0	1	0	0	0	6128	217	8	2	1371	2	FZD1	7	90895564	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4479192	90895564	68243099	334	5321											
SAMD9	54809	ucsc.edu;bcgsc.ca	37	7	92732405	92732405	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAMD9	NM_001193307	exon2	c.G3006A	p.L1002L	TTTATTCAGGTGA	.	140	54	136	2	.	140	T	92732405	C	T	92732405	2	4	41	1	0	0	0	0	0	0	0	1	13826	813	29	3		3	SAMD9	7	92732405	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1836841	92732405	66406258	335	5322											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94040245	94040245	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL1A2	NM_000089	exon22	c.T1242C	p.A414A	CAGAGCTGGCGTC	.	66	25	113	0	.	521	C	94040245	T	C	94040245	2	2	41	1	0	0	0	0	0	0	0	1	3678	1567	55	2		2	COL1A2	7	94040245	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1307840	94040245	65098418	336	5323											
PPP1R9A	55607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94540283	94540283	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPP1R9A	NM_017650	exon2	c.T858C	p.S286S	TAAAAGTACCTCT	.	134	59	163	1	.	208	C	94540283	T	C	94540283	2	2	41	1	0	0	0	0	0	0	0	1	12378	1635	57	2		2	PPP1R9A	7	94540283	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	500038	94540283	64598380	337	5324											
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107114661	107114661	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR22	NM_005295	exon3	c.T156A	p.I52I	AGAAATTGTGTTG	.	195	83	174	0	.	92	A	107114661	T	A	107114661	2	1	41	1	0	0	0	0	0	0	0	1	6682	1800	63	4		4	GPR22	7	107114661	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	12574378	107114661	52024002	338	5325											
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107706917	107706917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAMB4	NM_007356	exon20	c.A2575T	p.S859C	GGCAGCTGGGAAA	.	117	48	125	0	.	140	A	107706917	T	A	107706917	3	1	41	1	0	0	0	0	1	0	0	0	8613	1580	55	4	2770	4	LAMB4	7	107706917	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	592256	107706917	51431746	339	5326											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107820770	107820770	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NRCAM	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	104	62	105	0	.	156	T	107820770	C	T	107820770	2	4	41	1	0	0	0	0	0	0	0	1	10644	639	23	1		1	NRCAM	7	107820770	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	113853	107820770	51317893	340	5327											
ASZ1	136991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117003770	117003770	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASZ1	NM_130768	exon13	c.T1308C	p.H436H	TTGTATATGAGTT	.	85	26	73	0	.	515	G	117003770	A	G	117003770	2	3	41	1	0	0	0	0	0	0	0	1	1069	446	16	2		2	ASZ1	7	117003770	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	9183000	117003770	42134893	341	5328											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117407202	117407202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CTTNBP2	NM_033427	exon9	c.G2807T	p.G936V	AGCCCTCCGTGCC	.	76	32	72	0	.	94	A	117407202	C	A	117407202	3	1	41	1	0	0	0	0	1	0	0	0	4045	855	30	3	2244	3	CTTNBP2	7	117407202	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	403432	117407202	41731461	342	5329											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653036	121653036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPRZ1	NM_002851	exon12	c.T3936A	p.F1312L	TGTATTTGCTACA	.	146	57	157	0	.	699	A	121653036	T	A	121653036	3	1	41	1	0	0	0	0	1	0	0	0	12814	1809	63	4	3982	4	PTPRZ1	7	121653036	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4245834	121653036	37485627	343	5330											
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128323061	128323061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001012454	exon5	c.A778G	p.K260E	AGCTACAAGATAC	.	77	39	111	0	.	.	G	128323061	A	G	128323061	3	3	41	1	0	0	0	0	1	0	0	0	5613	131	5	2	796	2	FAM71F2	7	128323061	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6670025	128323061	30815602	344	5331											
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128434789	128434789	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC136	NM_001201372	exon4	c.G463T	p.E155X	CAGGCAGAGGTGT	.	222	83	314	1	.	24	T	128434789	G	T	128434789	4	4	41	1	0	0	0	0	0	1	0	0	2770	943	33	3	323	3	CCDC136	7	128434789	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	111728	128434789	30703874	345	5332											
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128450365	128450365	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC136	NM_022742	exon12	c.T1973G	p.L658W	AAGTGTTGGAGAA	.	158	69	149	0	.	24	G	128450365	T	G	128450365	3	3	41	1	0	0	0	0	1	0	0	0	2770	1821	63	5	2019	5	CCDC136	7	128450365	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	15576	128450365	30688298	346	5333											
ATP6V1F	9296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	128505618	128505618	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATP6V1F	NM_001198909	exon3	c.G430T	p.E144X	ACTGCCGAAGACC	.	64	27	79	0	.	91	T	128505618	G	T	128505618	4	4	41	1	0	0	0	0	0	1	0	0	1185	1059	37	1	352	1	ATP6V1F	7	128505618	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	55253	128505618	30633045	347	5334											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131908376	131908376	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLXNA4	NM_020911	exon9	c.A2007G	p.P669P	GCGGTATGGACTC	.	84	50	135	0	.	91	C	131908376	T	C	131908376	2	2	41	1	0	0	0	0	0	0	0	1	12122	1451	51	2		2	PLXNA4	7	131908376	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3402758	131908376	27230287	348	5335											
SLC37A3	84255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140048534	140048534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC37A3	NM_207113	exon10	c.A916G	p.N306D	AGTAATTCACTAA	.	90	44	120	0	.	93	C	140048534	T	C	140048534	3	2	41	1	0	0	0	0	1	0	0	0	14599	1783	62	2	741	2	SLC37A3	7	140048534	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8140158	140048534	19090129	349	5336											
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140285439	140285439	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DENND2A	NM_015689	exon3	c.T1195C	p.L399L	AATTCAAGACACA	.	134	51	144	0	.	138	G	140285439	A	G	140285439	2	3	41	1	0	0	0	0	0	0	0	1	4429	69	3	2		2	DENND2A	7	140285439	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	236905	140285439	18853224	350	5337											
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141752594	141752594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon26	c.C2969T	p.S990F	CCAATTCTTCTGG	.	96	34	111	1	.	70	T	141752594	C	T	141752594	3	4	41	1	0	0	0	0	1	0	0	0	9541	913	32	3	3067	3	MGAM	7	141752594	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1467155	141752594	17386069	351	5338											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141755835	141755835	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon29	c.C3519T	p.Y1173Y	CTACTACATGGGG	.	54	19	70	0	.	70	T	141755835	C	T	141755835	2	4	41	1	0	0	0	0	0	0	0	1	9541	489	17	3		3	MGAM	7	141755835	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3241	141755835	17382828	352	5339											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141764190	141764190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon37	c.A4352G	p.E1451G	ATTTGGAGTCCAG	.	70	29	100	0	.	70	G	141764190	A	G	141764190	3	3	41	1	0	0	0	0	1	0	0	0	9541	304	11	2	4494	2	MGAM	7	141764190	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8355	141764190	17374473	353	5340											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142563375	142563375	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHB6	NM_004445	exon8	c.C1092T	p.A364A	AGAGGCCCCCTGC	.	44	13	97	0	.	1489	T	142563375	C	T	142563375	2	4	41	1	0	0	0	0	0	0	0	1	5178	610	22	3		3	EPHB6	7	142563375	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	799185	142563375	16575288	354	5341											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143044041	143044041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLCN1	NM_000083	exon20	c.A2402T	p.E801V	CTGAAGAGGTGAG	.	64	30	118	0	.	156	T	143044041	A	T	143044041	3	4	41	1	0	0	0	0	1	0	0	0	3462	318	11	4	2480	4	CLCN1	7	143044041	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	480666	143044041	16094622	355	5342											
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143657623	143657623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2F1	NM_012369	exon1	c.T560A	p.L187Q	TCAGGCTGGCTTG	.	161	56	172	0	.	71	A	143657623	T	A	143657623	3	1	41	1	0	0	0	0	1	0	0	0	10996	1580	55	4	562	4	OR2F1	7	143657623	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	613582	143657623	15481040	356	5343											
OR6B1	135946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143701238	143701238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6B1	NM_001005281	exon1	c.T149A	p.L50Q	TGGTGCTGCAAAA	.	165	64	204	0	.	91	A	143701238	T	A	143701238	3	1	41	1	0	0	0	0	1	0	0	0	11187	1580	55	4	151	4	OR6B1	7	143701238	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	43615	143701238	15437425	357	5344											
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143792917	143792917	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2A12	NM_001004135	exon1	c.C717A	p.T239T	CTCTACCTGCTCC	.	136	44	173	0	.	92	A	143792917	C	A	143792917	2	1	41	1	0	0	0	0	0	0	0	1	10975	668	24	3		3	OR2A12	7	143792917	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	91679	143792917	15345746	358	5345											
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148767562	148767562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF786	NM_152411	exon4	c.A2302G	p.K768E	GCCTTTTCTTAAT	.	138	58	111	0	.	50	C	148767562	T	C	148767562	3	2	41	1	0	0	0	0	1	0	0	0	18155	1792	62	2	50	2	ZNF786	7	148767562	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4974645	148767562	10371101	359	5346											
FASTK	10922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150774867	150774867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FASTK	NM_006712	exon6	c.G1040A	p.G347D	GGGGTGCCTGTGG	.	88	36	101	0	.	359	T	150774867	C	T	150774867	3	4	41	1	0	0	0	0	1	0	0	0	5684	753	26	3	629	3	FASTK	7	150774867	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2007305	150774867	8363796	360	5347											
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150839513	150839513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGAP3	NM_031946	exon16	c.A2065T	p.S689C	TGGGCCAGCCTGA	.	76	9	110	0	.	92	T	150839513	A	T	150839513	3	4	41	1	0	0	0	0	1	0	0	0	369	188	7	4	2194	4	AGAP3	7	150839513	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	64646	150839513	8299150	361	5348											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3889582	3889582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD1	NM_033225	exon4	c.T455A	p.L152Q	CCTTTCAGGATTT	.	50	41	117	0	.	86	T	3889582	A	T	3889582	3	4	41	1	0	0	0	0	1	0	0	0	3944	188	7	4	10320	4	CSMD1	8	3889582	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10		3889582	142474440	362	5349											
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	6612657	6612657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGPAT5	NM_018361	exon7	c.G831A	p.M277I	ACATATGAGAAGA	.	294	20	540	0	.	90	A	6612657	G	A	6612657	3	1	41	1	0	0	0	0	1	0	0	0	390	1290	45	3	857	3	AGPAT5	8	6612657	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2723075	6612657	139751365	363	5350											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10465648	10465648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RP1L1	NM_178857	exon4	c.A5960T	p.Q1987L	GCCTCCTGGGTCT	.	38	21	80	0	.	139	A	10465648	T	A	10465648	3	1	41	1	0	0	0	0	1	0	0	0	13533	1580	55	4	1246	4	RP1L1	8	10465648	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3852991	10465648	135898374	364	5351											
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17933073	17933073	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASAH1	NM_001127505	exon2	c.A150T	p.S50S	ATAGGTTGATTTT	.	65	55	141	0	.	90	A	17933073	T	A	17933073	2	1	41	1	0	0	0	0	0	0	0	1	1006	1799	63	4		4	ASAH1	8	17933073	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7467425	17933073	128430949	365	5352											
CDCA2	157313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25319603	25319603	+	Missense_Mutation	SNP	G	G	T	rs149260399	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDCA2	NM_152562	exon4	c.G266T	p.R89L	GTAGACGACGTTC	.	53	40	120	1	G|1.000;A|0.000	90	T	25319603	G	T	25319603	3	4	41	1	0	0	0	0	1	0	0	0	3086	1058	37	1	276	1	CDCA2	8	25319603	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	7386530	25319603	121044419	366	5353											
FZD3	7976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28385435	28385435	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD3	NM_017412	exon5	c.G1158C	p.G386G	AGTTGGGGTTTCT	.	69	50	142	0	.	659	C	28385435	G	C	28385435	2	2	41	1	0	0	0	0	0	0	0	1	6131	1219	43	4		4	FZD3	8	28385435	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3065832	28385435	117978587	367	5354											
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42171857	42171857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IKBKB	NM_001556	exon9	c.A710G	p.Q237R	TGCGGCAGAAGAG	.	95	61	165	0	.	1164	G	42171857	A	G	42171857	3	3	41	1	0	0	0	0	1	0	0	0	7611	188	7	2	740	2	IKBKB	8	42171857	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	13786422	42171857	104192165	368	5355											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48695065	48695065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRKDC	.	.	.	.	CGCAGGTCCTCGC	.	59	15	39	0	.	1515	A	48695065	T	A	48695065	3	1	41	1	0	0	0	0	1	0	0	0	12521	1667	58	4	1148	4	PRKDC	8	48695065	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6523208	48695065	97668957	369	5356											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52320842	52320842	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PXDNL	NM_144651	exon17	c.C3342G	p.P1114P	GTAGGAGGGTGCC	.	193	73	145	0	.	70	C	52320842	G	C	52320842	2	2	41	1	0	0	0	0	0	0	0	1	12848	987	35	4		4	PXDNL	8	52320842	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3625777	52320842	94043180	370	5357											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52321428	52321428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PXDNL	NM_144651	exon17	c.T2756A	p.L919H	TTCAGGAGACCCC	.	201	67	178	0	.	70	T	52321428	A	T	52321428	3	4	41	1	0	0	0	0	1	0	0	0	12848	304	11	4	1663	4	PXDNL	8	52321428	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	586	52321428	94042594	371	5358											
FAM150A	389658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53451056	53451056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM150A	NM_207413	exon4	c.T337C	p.C113R	TAGCACATCTTTT	.	701	160	521	0	.	68	G	53451056	A	G	53451056	3	3	41	1	0	0	0	0	1	0	0	0	5456	217	8	2	56	2	FAM150A	8	53451056	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1129628	53451056	92912966	372	5359											
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54764467	54764467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RGS20	NM_170587	exon1	c.A8T	p.Q3L	TGCCCCAGCTTTC	.	124	32	95	0	.	227	T	54764467	A	T	54764467	3	4	41	1	0	0	0	0	1	0	0	0	13303	188	7	4	10	4	RGS20	8	54764467	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1313411	54764467	91599555	373	5360											
RP1	6101	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	55533893	55533893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RP1	NM_006269	exon2	c.C367T	p.R123C	CGTCGGCGCCCGC	.	142	89	75	1	.	102	T	55533893	C	T	55533893	3	4	41	1	0	0	0	0	1	0	0	0	13532	768	27	1	369	1	RP1	8	55533893	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	769426	55533893	90830129	374	5361											
PENK	5179	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57354153	57354153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PENK	NM_001135690	exon4	c.T482A	p.L161Q	GTTTCCAGAAGCT	.	202	26	173	1	.	517	T	57354153	A	T	57354153	3	4	41	1	0	0	0	0	1	0	0	0	11727	188	7	4	325	4	PENK	8	57354153	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1820260	57354153	89009869	375	5362											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	67976717	67976717	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSPP1	NM_024790	exon1	c.A84T	p.R28R	GACGCGAGCCCGC	.	123	73	85	0	.	138	T	67976717	A	T	67976717	2	4	41	1	0	0	0	0	0	0	0	1	3962	291	11	4		4	CSPP1	8	67976717	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	10622564	67976717	78387305	376	5363											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68965436	68965436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PREX2	NM_025170	exon9	c.C1048A	p.H350N	GAGAAGCATGAAT	.	192	130	142	0	.	390	A	68965436	C	A	68965436	3	1	41	1	0	0	0	0	1	0	0	0	12477	710	25	3	1082	3	PREX2	8	68965436	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	988719	68965436	77398586	377	5364											
TRPA1	8989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	72938310	72938310	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRPA1	NM_007332	exon26	c.2938-2A>T	.	TCCACCTAAAGTG	.	111	58	69	1	.	230	A	72938310	T	A	72938310	5	1	41	1	0	0	0	0	0	0	1	0	16574	1536	53	4	435	4	TRPA1	8	72938310	Splice_Site	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3972874	72938310	73425712	378	5365											
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	80553736	80553736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STMN2	NM_007029	exon3	c.C239T	p.S80F	ACCTGTCCCTGGA	.	300	20	266	0	.	515	T	80553736	C	T	80553736	3	4	41	1	0	0	0	0	1	0	0	0	15308	855	30	3	249	3	STMN2	8	80553736	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	7615426	80553736	65810286	379	5366											
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106813578	106813578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	ZFPM2,NS,carcinoma,-1	ZFPM2	NM_012082	exon8	c.G1268A	p.S423N	CCCAGAGCCAAAA	.	299	134	149	0	.	139	A	106813578	G	A	106813578	3	1	41	1	0	0	0	0	1	0	0	0	17655	971	34	3	1298	3	ZFPM2	8	106813578	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	26259842	106813578	39550444	380	5367											
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110100121	110100121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRHR	NM_003301	exon1	c.T380G	p.I127S	TAGCAATCTGTCA	.	416	77	237	0	.	620	G	110100121	T	G	110100121	3	3	41	1	0	0	0	0	1	0	0	0	16477	1435	50	5	382	5	TRHR	8	110100121	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3286543	110100121	36263901	381	5368											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110509272	110509272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PKHD1L1	NM_177531	exon64	c.C10452G	p.C3484W	GACATGCTGGGAT	.	318	68	140	0	.	145	G	110509272	C	G	110509272	3	3	41	1	0	0	0	0	1	0	0	0	11972	805	28	4	10706	4	PKHD1L1	8	110509272	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	409151	110509272	35854750	382	5369											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	113326785	113326785	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD3	NM_198123	exon48	c.T7422A	p.Y2474X	GTCAGGATATCCA	.	354	83	184	0	.	1132	T	113326785	A	T	113326785	4	4	41	1	0	0	0	0	0	1	0	0	3946	340	12	4	3797	4	CSMD3	8	113326785	Nonsense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2817513	113326785	33037237	383	5370											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113988150	113988150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD3	NM_198123	exon7	c.G1258T	p.A420S	TATCTGCTGGATG	.	316	145	150	0	.	1132	A	113988150	C	A	113988150	3	1	41	1	0	0	0	0	1	0	0	0	3946	797	28	3	10125	3	CSMD3	8	113988150	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	661365	113988150	32375872	384	5371											
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120628551	120628551	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENPP2	NM_001130863	exon8	c.T731A	p.L244Q	CCTCGCAGATGAA	.	195	93	71	0	.	292	T	120628551	A	T	120628551	3	4	41	1	0	0	0	0	1	0	0	0	5130	188	7	4	2171	4	ENPP2	8	120628551	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6640401	120628551	25735471	385	5372											
FER1L6	654463	ucsc.edu;bcgsc.ca	37	8	125103740	125103740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FER1L6	NM_001039112	exon34	c.G4468A	p.D1490N	AAGCTGGATGGAC	.	380	182	228	2	.	100	A	125103740	G	A	125103740	3	1	41	1	0	0	0	0	1	0	0	0	5815	1174	41	3	4598	3	FER1L6	8	125103740	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4475189	125103740	21260282	386	5373											
GSDMC	56169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	130778031	130778031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GSDMC	NM_031415	exon4	c.T413C	p.L138S	GGATCCAACAGTT	.	117	29	73	0	.	93	G	130778031	A	G	130778031	3	3	41	1	0	0	0	0	1	0	0	0	6818	131	5	2	1157	2	GSDMC	8	130778031	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5674291	130778031	15585991	387	5374											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	131955635	131955635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADCY8	NM_001115	exon4	c.C1315T	p.L439F	CGTTGAGCATCCT	.	175	77	116	0	.	157	A	131955635	G	A	131955635	3	1	41	1	0	0	0	0	1	0	0	0	300	971	34	3	2500	3	ADCY8	8	131955635	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1177604	131955635	14408387	388	5375											
KCNQ3	3786	broad.mit.edu;bcgsc.ca	37	8	133141583	133141583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNQ3	NM_004519	exon15	c.G2545T	p.G849C	TGGAGCCGCTGGG	.	166	46	78	2	.	138	A	133141583	C	A	133141583	3	1	41	1	0	0	0	0	1	0	0	0	8084	652	23	1	77	1	KCNQ3	8	133141583	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1185948	133141583	13222439	389	5376											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139705929	139705929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL22A1	NM_152888	exon35	c.A2714C	p.Q905P	CCTTCCTGTCCCT	.	133	32	73	0	.	103	G	139705929	T	G	139705929	3	3	41	1	0	0	0	0	1	0	0	0	3681	1580	55	5	2290	5	COL22A1	8	139705929	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6564346	139705929	6658093	390	5377											
DENND3	22898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142146872	142146872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DENND3	NM_014957	exon2	c.C127A	p.P43T	ACCCTGCCGCAGC	.	98	51	68	1	.	91	A	142146872	C	A	142146872	3	1	41	1	0	0	0	0	1	0	0	0	4432	739	26	3	129	3	DENND3	8	142146872	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2440943	142146872	4217150	391	5378											
BAI1	575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	143558633	143558633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BAI1	NM_001702	exon4	c.T1216G	p.C406G	GCCGTGTGCCCAG	.	54	10	42	0	.	1129	G	143558633	T	G	143558633	3	3	41	1	0	0	0	0	1	0	0	0	1298	1696	59	5	1230	5	BAI1	8	143558633	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1411761	143558633	2805389	392	5379											
ARC	23237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143694546	143694546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARC	NM_015193	exon1	c.G1087T	p.A363S	GCTCGGCCGCCTG	.	86	36	53	0	.	135	A	143694546	C	A	143694546	3	1	41	1	0	0	0	0	1	0	0	0	841	739	26	3	107	3	ARC	8	143694546	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	135913	143694546	2669476	393	5380											
GLI4	2738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144351615	144351615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GLI4	NM_138465	exon2	c.G49T	p.V17F	TCCCCTGTCAGTC	.	151	68	98	0	.	91	T	144351615	G	T	144351615	3	4	41	1	0	0	0	0	1	0	0	0	6440	1377	48	3	51	3	GLI4	8	144351615	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	657069	144351615	2012407	394	5381											
TIGD5	84948	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144681732	144681732	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TIGD5	NM_032862	exon1	c.G1659A	p.L553L	AGCCCTGCCCCCT	.	75	27	46	2	.	90	A	144681732	G	A	144681732	2	1	41	1	0	0	0	0	0	0	0	1	15896	1306	46	3		3	TIGD5	8	144681732	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	330117	144681732	1682290	395	5382											
ZNF707	286075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144776308	144776308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF707	NM_001100598	exon6	c.A724G	p.S242G	GCGTTCAGCCTGA	.	89	10	49	0	.	67	G	144776308	A	G	144776308	3	3	41	1	0	0	0	0	1	0	0	0	18108	188	7	2	738	2	ZNF707	8	144776308	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	94576	144776308	1587714	396	5383											
DGAT1	8694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145540683	145540684	+	Splice_Site	INS	-	-	CC	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_012079	exon16	c.1248+2->GG	.	GCACTGACCTCGT	.	114	57	68	0	.	.	CC	145540684	-	CC	145540683	8	5	41	1	0	1	1	0	0	0	1	0	4457	289	10	0	228	0	DGAT1	8	145540683	Splice_Site	INS	-	TCGA-CC-A7IH-01A-11D-A33K-10	764375	145540683	823339	397	5384											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14859459	14859459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FREM1	NM_144966	exon5	c.T353G	p.I118R	GTTTCTATGAAGG	.	119	49	178	0	.	138	C	14859459	A	C	14859459	3	2	41	1	0	0	0	0	1	0	0	0	6044	449	16	5	6372	5	FREM1	9	14859459	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10		14859459	126353972	398	5385											
PTPLAD2	401494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008034	21008034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPLAD2	NM_001010915	exon6	c.T602C	p.M201T	AGCATCATGAGAT	.	98	43	98	0	.	91	G	21008034	A	G	21008034	3	3	41	1	0	0	0	0	1	0	0	0	12776	217	8	2	104	2	PTPLAD2	9	21008034	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6148575	21008034	120205397	399	5386											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27203079	27203079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TEK	NM_000459	exon13	c.C2171A	p.A724D	ACCCAGCCTTTTC	.	134	56	185	0	.	1584	A	27203079	C	A	27203079	3	1	41	1	0	0	0	0	1	0	0	0	15748	739	26	3	2221	3	TEK	9	27203079	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	6195045	27203079	114010352	400	5387											
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32632432	32632432	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TAF1L	NM_153809	exon1	c.G3146C	p.R1049P	ATTGTGCGCACCA	.	217	81	215	0	.	870	G	32632432	C	G	32632432	3	3	41	1	0	0	0	0	1	0	0	0	15520	768	27	4	2338	4	TAF1L	9	32632432	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5429353	32632432	108580999	401	5388											
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33469275	33469275	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOL6	NM_022917	exon6	c.G792C	p.P264P	GCGGCACGGGCGG	.	98	45	116	0	.	92	G	33469275	C	G	33469275	2	3	41	1	0	0	0	0	0	0	0	1	10525	523	19	4		4	NOL6	9	33469275	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	836843	33469275	107744156	402	5389											
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34263160	34263160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF24	NM_194313	exon9	c.G1454T	p.C485F	CGGATACATTCCT	.	121	46	157	0	.	22	A	34263160	C	A	34263160	3	1	41	1	0	0	0	0	1	0	0	0	8292	478	17	3	2672	3	KIF24	9	34263160	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	793885	34263160	106950271	403	5390											
DCAF10	79269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37861138	37861138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCAF10	NM_024345	exon7	c.G1313T	p.C438F	CCTAGTGTACTTG	.	34	8	48	0	.	115	T	37861138	G	T	37861138	3	4	41	1	0	0	0	0	1	0	0	0	4261	1391	48	3	1339	3	DCAF10	9	37861138	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3597978	37861138	103352293	404	5391											
PIP5K1B	8395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71555562	71555562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PIP5K1B	NM_003558	exon14	c.C1358A	p.A453D	TCCTAGCCCTGGG	.	147	64	146	0	.	240	A	71555562	C	A	71555562	3	1	41	1	0	0	0	0	1	0	0	0	11940	753	26	3	1400	3	PIP5K1B	9	71555562	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	33694424	71555562	69657869	405	5392											
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	75404071	75404071	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMC1	NM_138691	exon15	c.A1062T	p.V354V	CCAAGTAGAAGAA	.	139	8	130	0	.	91	T	75404071	A	T	75404071	2	4	41	1	0	0	0	0	0	0	0	1	15981	407	15	4		4	TMC1	9	75404071	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3848509	75404071	65809360	406	5393											
PRUNE2	158471	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79318669	79318669	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRUNE2	NM_015225	exon9	c.G7860A	p.T2620T	TGATCTCGTATCG	.	111	45	141	2	.	157	T	79318669	C	T	79318669	2	4	41	1	0	0	0	0	0	0	0	1	12641	871	31	1		1	PRUNE2	9	79318669	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3914598	79318669	61894762	407	5394											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79325463	79325463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRUNE2	NM_015225	exon8	c.G1727T	p.S576I	CTGGGACTGTCTT	.	74	27	83	0	.	157	A	79325463	C	A	79325463	3	1	41	1	0	0	0	0	1	0	0	0	12641	565	20	3	7587	3	PRUNE2	9	79325463	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	6794	79325463	61887968	408	5395											
FOXB2	442425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	79635447	79635447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXB2	NM_001013735	exon1	c.T877A	p.S293T	TTGGCGTCCGTCA	.	40	20	43	0	.	205	A	79635447	T	A	79635447	3	1	41	1	0	0	0	0	1	0	0	0	5993	1667	58	4	879	4	FOXB2	9	79635447	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	309984	79635447	61577984	409	5396											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88292376	88292376	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGTPBP1	NM_015239	exon6	c.T411G	p.S137S	AAGAATAGAATGA	.	122	6	110	0	.	158	C	88292376	A	C	88292376	2	2	41	1	0	0	0	0	0	0	0	1	400	407	15	5		5	AGTPBP1	9	88292376	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8656929	88292376	52921055	410	5397											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88961390	88961390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZCCHC6	NM_024617	exon3	c.A526G	p.K176E	GCTTCTTGTTTTC	.	90	28	118	0	.	92	C	88961390	T	C	88961390	3	2	41	1	0	0	0	0	1	0	0	0	17589	1821	63	2	4061	2	ZCCHC6	9	88961390	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	669014	88961390	52252041	411	5398											
SYK	6850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	93650165	93650165	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYK	NM_003177	exon12	c.A1716G	p.P572P	GAAGCCATATCGA	.	97	40	111	0	.	1402	G	93650165	A	G	93650165	2	3	41	1	0	0	0	0	0	0	0	1	15435	204	8	2		2	SYK	9	93650165	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4688775	93650165	47563266	412	5399											
ROR2	4920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94486208	94486208	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROR2	NM_004560	exon9	c.C2568A	p.V856V	CTTGGGGACCATC	.	39	16	73	0	.	1471	T	94486208	G	T	94486208	2	4	41	1	0	0	0	0	0	0	0	1	13527	1161	41	3		3	ROR2	9	94486208	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	836043	94486208	46727223	413	5400											
BICD2	23299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95477644	95477644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD2	NM_001003800	exon7	c.A2360T	p.Q787L	TTCTGCTGGATGG	.	81	35	85	0	.	226	A	95477644	T	A	95477644	3	1	41	1	0	0	0	0	1	0	0	0	1429	1580	55	4	221	4	BICD2	9	95477644	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	991436	95477644	45735787	414	5401											
MURC	347273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103348527	103348527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MURC	NM_001018116	exon2	c.A889G	p.I297V	GACATCATTGCCA	.	120	50	153	1	.	69	G	103348527	A	G	103348527	3	3	41	1	0	0	0	0	1	0	0	0	9987	217	8	2	895	2	MURC	9	103348527	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	7870883	103348527	37864904	415	5402											
ABCA1	19	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107599794	107599794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA1	NM_005502	exon10	c.T1109C	p.I370T	CAGATAATGCGGG	.	65	28	70	1	.	1016	G	107599794	A	G	107599794	3	3	41	1	0	0	0	0	1	0	0	0	28	101	4	2	5840	2	ABCA1	9	107599794	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4251267	107599794	33613637	416	5403											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113168473	113168473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SVEP1	NM_153366	exon38	c.A9407T	p.E3136V	TGTGCCTCTCCAG	.	153	62	145	0	.	75	A	113168473	T	A	113168473	3	1	41	1	0	0	0	0	1	0	0	0	15417	1551	54	4	1352	4	SVEP1	9	113168473	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5568679	113168473	28044958	417	5404											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	113341549	113341549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SVEP1	NM_153366	exon1	c.C275T	p.S92F	ACGCTGGACGAAT	.	51	21	60	0	.	75	A	113341549	G	A	113341549	3	1	41	1	0	0	0	0	1	0	0	0	15417	1174	41	3	10632	3	SVEP1	9	113341549	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	173076	113341549	27871882	418	5405											
ZNF483	158399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114289679	114289679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF483	NM_133464	exon2	c.C4A	p.Q2K	ACAATGCAAGCTG	.	117	9	104	0	.	91	A	114289679	C	A	114289679	3	1	41	1	0	0	0	0	1	0	0	0	17933	711	25	3	6	3	ZNF483	9	114289679	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	948130	114289679	26923752	419	5406											
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126133122	126133122	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CRB2	NM_173689	exon7	c.A1790T	p.E597V	TCGGTGAGAACGT	.	32	7	28	1	.	91	T	126133122	A	T	126133122	3	4	41	1	0	0	0	0	1	0	0	0	3849	304	11	4	1816	4	CRB2	9	126133122	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	11843443	126133122	15080309	420	5407											
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127549471	127549471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OLFML2A	NM_182487	exon2	c.A308G	p.E103G	AGAACGAGTGGAA	.	70	35	76	0	.	68	G	127549471	A	G	127549471	3	3	41	1	0	0	0	0	1	0	0	0	10857	304	11	2	314	2	OLFML2A	9	127549471	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1416349	127549471	13663960	421	5408											
LMX1B	4010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129455877	129455877	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LMX1B	NM_001174146	exon5	c.A816T	p.A272A	AAGAGCAAAGGTA	.	88	37	145	0	.	90	T	129455877	A	T	129455877	2	4	41	1	0	0	0	0	0	0	0	1	8862	117	5	4		4	LMX1B	9	129455877	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1906406	129455877	11757554	422	5409											
FAM129B	64855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130279260	130279260	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM129B	NM_022833	exon8	c.C849A	p.A283A	CGCCTTGGCCTGC	.	57	21	81	0	.	68	T	130279260	G	T	130279260	2	4	41	1	0	0	0	0	0	0	0	1	5437	1335	47	3		3	FAM129B	9	130279260	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	823383	130279260	10934171	423	5410											
CDK9	1025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130551623	130551623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDK9	NM_001261	exon7	c.A920T	p.D307V	ACAGCGATGACGC	.	82	38	87	1	.	521	T	130551623	A	T	130551623	3	4	41	1	0	0	0	0	1	0	0	0	3151	333	12	4	946	4	CDK9	9	130551623	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	272363	130551623	10661808	424	5411											
C9orf50	375759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	132375462	132375471	+	Frame_Shift_Del	DEL	GAACAGAAGG	GAACAGAAGG	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GAACAGAAGG	GAACAGAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C9orf50	NM_199350	exon6	c.1103_1112del	p.368_371del	TTCCATGAACAGA	.	87	25	106	0	.	91	-	132375471	GAACAGAAGG	-	132375462	7	5	41	1	0	1	0	1	0	0	0	0	2487	1294	45	0	191	0	C9orf50	9	132375462	Frame_Shift_Del	DEL	GAACAGAAGG	TCGA-CC-A7IH-01A-11D-A33K-10	1823839	132375462	8837969	425	5412											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134526250	134526250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAPGEF1	NM_198679	exon2	c.A151G	p.K51E	TTCCCTTCTTTGA	.	169	68	172	0	.	849	C	134526250	T	C	134526250	3	2	41	1	0	0	0	0	1	0	0	0	13043	1792	62	2	3228	2	RAPGEF1	9	134526250	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2150788	134526250	6687181	426	5413											
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136029632	136029632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GBGT1	NM_021996	exon7	c.C376G	p.Q126E	AGGACTGGATGAA	.	33	11	37	0	.	90	C	136029632	G	C	136029632	3	2	41	1	0	0	0	0	1	0	0	0	6272	1357	47	4	671	4	GBGT1	9	136029632	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1503382	136029632	5183799	427	5414											
ADAMTS13	11093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136324153	136324153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS13	NM_139025	exon29	c.T4135C	p.W1379R	CTCTACTGGGAGT	.	136	60	193	2	.	229	C	136324153	T	C	136324153	3	2	41	1	0	0	0	0	1	0	0	0	258	1580	55	2	4249	2	ADAMTS13	9	136324153	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	294521	136324153	4889278	428	5415											
SOHLH1	402381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138589403	138589403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SOHLH1	NM_001012415	exon4	c.A416T	p.Q139L	TGAATCTGACTCG	.	67	30	98	0	.	135	A	138589403	T	A	138589403	3	1	41	1	0	0	0	0	1	0	0	0	14923	1580	55	4	808	4	SOHLH1	9	138589403	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2265250	138589403	2624028	429	5416											
LHX3	8022	broad.mit.edu;bcgsc.ca	37	9	139089345	139089345	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LHX3	NM_014564	exon6	c.A1035C	p.P345P	GGTGTCTGGGTAC	.	63	31	69	2	.	91	G	139089345	T	G	139089345	2	3	41	1	0	0	0	0	0	0	0	1	8772	1567	55	5		5	LHX3	9	139089345	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	499942	139089345	2124086	430	5417											
GPSM1	26086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139231978	139231978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPSM1	NM_015597	exon5	c.A659G	p.Y220C	CCCACTATTTGTT	.	157	73	189	1	.	90	G	139231978	A	G	139231978	3	3	41	1	0	0	0	0	1	0	0	0	6734	449	16	2	677	2	GPSM1	9	139231978	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	142633	139231978	1981453	431	5418											
CELF2	10659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	11207586	11207586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CELF2	NM_006561	exon2	c.G212A	p.G71E	CTTACGGAGCCGT	.	115	69	91	0	.	90	A	11207586	G	A	11207586	3	1	41	1	0	0	0	0	1	0	0	0	3216	1174	41	3	275	3	CELF2	10	11207586	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		11207586	124327161	432	5419											
PTER	9317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16553155	16553155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTER	NM_001001484	exon6	c.T950C	p.L317P	ATATACTCACCAA	.	156	31	123	0	.	92	C	16553155	T	C	16553155	3	2	41	1	0	0	0	0	1	0	0	0	12739	1551	54	2	964	2	PTER	10	16553155	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5345569	16553155	118981592	433	5420											
NEBL	10529	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21120179	21120179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEBL	NM_006393	exon16	c.C1617A	p.S539R	ATCCATGCTCACT	.	69	38	77	1	.	92	T	21120179	G	T	21120179	3	4	41	1	0	0	0	0	1	0	0	0	10303	1310	46	3	1479	3	NEBL	10	21120179	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4567024	21120179	114414568	434	5421											
NEBL	10529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21178773	21178773	+	Splice_Site	SNP	C	C	A	rs139581346	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEBL	NM_006393	exon4	c.258+1G>T	.	ACCTTACCTCAGA	.	299	170	209	0	C|0.999;T|0.001	92	A	21178773	C	A	21178773	5	1	41	1	0	0	0	0	0	0	1	0	10303	521	18	3	2889	3	NEBL	10	21178773	Splice_Site	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	58594	21178773	114355974	435	5422											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24833078	24833078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1217	NM_019590	exon19	c.A4879T	p.R1627W	ATCGCTAGGTCTC	.	119	64	84	0	.	98	T	24833078	A	T	24833078	3	4	41	1	0	0	0	0	1	0	0	0	8216	411	15	4	4953	4	KIAA1217	10	24833078	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3654305	24833078	110701669	436	5423											
PRTFDC1	56952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	25145922	25145922	+	Missense_Mutation	SNP	A	A	T	rs148662493		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTFDC1	NM_020200	exon6	c.T426A	p.D142E	GACAACATCCTTT	.	164	12	136	0	A|1.000;T|0.000	91	T	25145922	A	T	25145922	3	4	41	1	0	0	0	0	1	0	0	0	12637	214	8	4	267	4	PRTFDC1	10	25145922	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	312844	25145922	110388825	437	5424											
PRTFDC1	56952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25226147	25226147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTFDC1	NM_020200	exon3	c.T305C	p.M102T	ACCTTCATTGAGA	.	86	22	79	0	.	91	G	25226147	A	G	25226147	3	3	41	1	0	0	0	0	1	0	0	0	12637	217	8	2	400	2	PRTFDC1	10	25226147	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	80225	25226147	110308600	438	5425											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26377316	26377316	+	Missense_Mutation	SNP	G	G	T	rs200209381	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO3A	NM_017433	exon15	c.G1544T	p.R515L	AATCCCGAGTTAT	.	166	42	106	0	G|0.999;A|0.000	1007	T	26377316	G	T	26377316	3	4	41	1	0	0	0	0	1	0	0	0	10076	1058	37	1	1594	1	MYO3A	10	26377316	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1151169	26377316	109157431	439	5426											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26465717	26465717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO3A	NM_017433	exon31	c.G4381T	p.G1461C	TATCTGGGTGTCT	.	98	5	87	0	.	1007	T	26465717	G	T	26465717	3	4	41	1	0	0	0	0	1	0	0	0	10076	1232	43	3	4495	3	MYO3A	10	26465717	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	88401	26465717	109069030	440	5427											
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27306632	27306632	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD26	NM_014915	exon30	c.A4305G	p.L1435L	CATAGATAACAAC	.	159	93	96	1	.	138	C	27306632	T	C	27306632	2	2	41	1	0	0	0	0	0	0	0	1	654	1403	49	2		2	ANKRD26	10	27306632	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	840915	27306632	108228115	441	5428											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34759158	34759158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PARD3	NM_001184788	exon4	c.C437T	p.P146L	AGAGCTGGGTCAC	.	130	34	117	0	.	92	A	34759158	G	A	34759158	3	1	41	1	0	0	0	0	1	0	0	0	11443	1348	47	3	3756	3	PARD3	10	34759158	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	7452526	34759158	100775589	442	5429											
MBL2	4153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	54528161	54528161	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MBL2	NM_000242	exon4	c.T483G	p.S161S	GGCCACAGAGGCC	.	153	46	144	0	.	91	C	54528161	A	C	54528161	2	2	41	1	0	0	0	0	0	0	0	1	9350	175	7	5		5	MBL2	10	54528161	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	19769003	54528161	81006586	443	5430											
FAM13C	220965	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61014197	61014197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM13C	NM_198215	exon11	c.A1243C	p.K415Q	CTTGCTTAGTTAC	.	116	36	109	2	.	70	G	61014197	T	G	61014197	3	3	41	1	0	0	0	0	1	0	0	0	5454	1763	61	5	530	5	FAM13C	10	61014197	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6486036	61014197	74520550	444	5431											
SLC16A9	220963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61443920	61443920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC16A9	NM_194298	exon2	c.T130C	p.F44L	CACCAAAGGCATC	.	243	12	213	0	.	93	G	61443920	A	G	61443920	3	3	41	1	0	0	0	0	1	0	0	0	14415	72	3	2	1419	2	SLC16A9	10	61443920	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	429723	61443920	74090827	445	5432											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61829030	61829030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANK3	NM_020987	exon37	c.C11609A	p.T3870N	GGTGAAGTGGCCT	.	354	202	252	0	.	107	T	61829030	G	T	61829030	3	4	41	1	0	0	0	0	1	0	0	0	622	1029	36	3	1865	3	ANK3	10	61829030	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	385110	61829030	73705717	446	5433											
RUFY2	55680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70141014	70141014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RUFY2	NM_017987	exon11	c.A1187T	p.N396I	TCTATGTTAATTG	.	116	37	81	0	.	91	A	70141014	T	A	70141014	3	1	41	1	0	0	0	0	1	0	0	0	13739	1725	60	4	883	4	RUFY2	10	70141014	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8311984	70141014	65393733	447	5434											
SAR1A	56681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71917592	71917592	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAR1A	NM_020150	exon5	c.A276C	p.A92A	ATTAATTGCTGGG	.	127	43	92	0	.	227	G	71917592	T	G	71917592	2	3	41	1	0	0	0	0	0	0	0	1	13839	1799	63	5		5	SAR1A	10	71917592	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1776578	71917592	63617155	448	5435											
PSAP	5660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73591653	73591653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSAP	NM_002778	exon3	c.A199G	p.K67E	CGTCTTTGCATAT	.	116	19	85	0	.	91	C	73591653	T	C	73591653	3	2	41	1	0	0	0	0	1	0	0	0	12643	1821	63	2	1439	2	PSAP	10	73591653	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1674061	73591653	61943094	449	5436											
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75525661	75525661	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEC24C	NM_004922	exon11	c.A1470T	p.V490V	CACTGTAGATTAC	.	108	34	123	0	.	92	T	75525661	A	T	75525661	2	4	41	1	0	0	0	0	0	0	0	1	13996	407	15	4		4	SEC24C	10	75525661	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1934008	75525661	60009086	450	5437											
SFTPA1	653509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81371581	81371581	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001093770	exon3	c.C45A	p.A15A	CAGAGCCATGTGG	.	421	152	332	1	.	.	A	81371581	C	A	81371581	2	1	41	1	0	0	0	0	0	0	0	1	14189	581	21	3		3	SFTPA1	10	81371581	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5845920	81371581	54163166	451	5438											
CDHR1	92211	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85970915	85970915	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDHR1	NM_001171971	exon13	c.T1479A	p.A493A	GGTGGCTGTCACA	.	138	42	114	1	.	91	A	85970915	T	A	85970915	2	1	41	1	0	0	0	0	0	0	0	1	3118	1567	55	4		4	CDHR1	10	85970915	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4599334	85970915	49563832	452	5439											
LRIT1	26103	ucsc.edu;bcgsc.ca	37	10	85992413	85992413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRIT1	NM_015613	exon4	c.G1142T	p.R381M	ACATGCCTGGCCA	.	193	111	160	2	.	90	A	85992413	C	A	85992413	3	1	41	1	0	0	0	0	1	0	0	0	8947	681	24	3	733	3	LRIT1	10	85992413	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	21498	85992413	49542334	453	5440											
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88441277	88441277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LDB3	NM_007078	exon4	c.C406A	p.P136T	GGCACCCCGGAGC	.	63	19	35	0	.	92	A	88441277	C	A	88441277	3	1	41	1	0	0	0	0	1	0	0	0	8697	623	22	3	420	3	LDB3	10	88441277	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2448864	88441277	47093470	454	5441											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91174557	91174558	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFIT5	NM_012420	exon1	c.2_3insGA	p.M1fs	CCATCATGAGGTA	.	78	45	40	0	.	90	GA	91174558	-	GA	91174557	7	5	41	1	0	1	1	0	0	0	0	0	7525	1464	51	0	4	0	IFIT5	10	91174557	Frame_Shift_Ins	INS	-	TCGA-CC-A7IH-01A-11D-A33K-10	2733280	91174557	44360190	455	5442											
TLX1NB	100038246	broad.mit.edu;mdanderson.org	37	10	102849344	102849344	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001085398	exon3	c.C319A	p.R107R	TTCTCCGTAGGCG	.	99	59	78	2	.	.	T	102849344	G	T	102849344	2	4	41	1	0	0	0	0	0	0	0	1	15957	1144	40	1		1	TLX1NB	10	102849344	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	11674787	102849344	32685403	456	5443											
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104268957	104268957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SUFU	NM_001178133	exon2	c.A214T	p.S72C	TATGTTAGCATGT	.	130	89	150	0	.	2246	T	104268957	A	T	104268957	3	4	41	1	0	0	0	0	1	0	0	0	15367	420	15	4	220	4	SUFU	10	104268957	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1419613	104268957	31265790	457	5444											
SHOC2	8036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	112724768	112724768	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SHOC2	NM_007373	exon2	c.652delA	p.S218fs	AAACTCAGCATGC	.	133	42	102	0	.	524	-	112724768	A	-	112724768	7	5	41	1	0	1	0	1	0	0	0	0	14287	188	7	0	654	0	SHOC2	10	112724768	Frame_Shift_Del	DEL	A	TCGA-CC-A7IH-01A-11D-A33K-10	8455811	112724768	22809979	458	5445											
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118969679	118969679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNK18	NM_181840	exon3	c.A1024G	p.I342V	TTCTCCATTTATA	.	132	36	107	0	.	91	G	118969679	A	G	118969679	3	3	41	1	0	0	0	0	1	0	0	0	8065	217	8	2	1034	2	KCNK18	10	118969679	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6244911	118969679	16565068	459	5446											
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124339354	124339354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DMBT1	NM_007329	exon10	c.C940A	p.P314T	AGCTGCCCCCACA	.	150	43	155	2	.	494	A	124339354	C	A	124339354	3	1	41	1	0	0	0	0	1	0	0	0	4577	623	22	3	978	3	DMBT1	10	124339354	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5369675	124339354	11195393	460	5447											
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134910562	134910562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR123	NM_001083909	exon3	c.C88A	p.L30I	ATGCTGCTCTGCC	.	54	32	44	0	.	90	A	134910562	C	A	134910562	3	1	41	1	0	0	0	0	1	0	0	0	6637	797	28	3	94	3	GPR123	10	134910562	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	10571208	134910562	624185	461	5448											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	1031239	1031239	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC6	NM_005961	exon5	c.C504G	p.Y168X	ACCCATGTACTTC	.	124	51	121	0	.	23	C	1031239	G	C	1031239	4	2	41	1	0	0	0	0	0	1	0	0	9980	1372	48	4	6931	4	MUC6	11	1031239	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		1031239	133975277	462	5449											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1087958	1087958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC2	NM_002457	exon25	c.T3433C	p.C1145R	GAGACCTGCAGGA	.	61	25	94	0	.	90	C	1087958	T	C	1087958	3	2	41	1	0	0	0	0	1	0	0	0	9975	1580	55	2	3531	2	MUC2	11	1087958	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	56719	1087958	133918558	463	5450											
KRTAP5-1	387264	broad.mit.edu;bcgsc.ca	37	11	1605913	1605913	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-1	NM_001005922	exon1	c.T567C	p.S189S	CCCACAAGAACCG	.	103	14	129	2	.	44	G	1605913	A	G	1605913	2	3	41	1	0	0	0	0	0	0	0	1	8558	59	3	2		2	KRTAP5-1	11	1605913	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	517955	1605913	133400603	464	5451											
KRTAP5-3	387266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1629498	1629498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-3	NM_001012708	exon1	c.T118A	p.C40S	AGCAGCAGACAGG	.	93	39	126	0	.	92	T	1629498	A	T	1629498	3	4	41	1	0	0	0	0	1	0	0	0	8562	188	7	4	602	4	KRTAP5-3	11	1629498	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	23585	1629498	133377018	465	5452											
KRTAP5-6	440023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1718512	1718532	+	In_Frame_Del	DEL	GGCTGTGGGGGCTGTGGCTCT	GGCTGTGGGGGCTGTGGCTCT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GGCTGTGGGGGCTGTGGCTCT	GGCTGTGGGGGCTGTGGCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-6	NM_001012416	exon1	c.37_57del	p.13_19del	GGCTCCGGCTGTG	.	142	44	159	0	.	90	-	1718532	GGCTGTGGGGGCTGTGGCTCT	-	1718512	7	5	41	1	0	1	0	1	0	0	0	0	8565	1116	39	0	39	0	KRTAP5-6	11	1718512	In_Frame_Del	DEL	GGCTGTGGGGGCTGTGGCTCT	TCGA-CC-A7IH-01A-11D-A33K-10	89014	1718512	133288004	466	5453											
OR51L1	119682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5020779	5020779	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR51L1	NM_001004755	exon1	c.A567G	p.L189L	AAGATTATCCTGT	.	127	55	168	2	.	69	G	5020779	A	G	5020779	2	3	41	1	0	0	0	0	0	0	0	1	11102	446	16	2		2	OR51L1	11	5020779	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3302267	5020779	129985737	467	5454											
OR51V1	283111	ucsc.edu;bcgsc.ca	37	11	5221747	5221747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR51V1	NM_001004760	exon1	c.C184A	p.P62T	GGCTTGGCTCAGT	.	88	36	136	2	.	69	T	5221747	G	T	5221747	3	4	41	1	0	0	0	0	1	0	0	0	11107	1203	42	3	784	3	OR51V1	11	5221747	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	200968	5221747	129784769	468	5455											
OR56A5	390084	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	5988980	5988980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001146033	exon1	c.A745T	p.I249F	TGAGGATGAAGTG	.	157	63	195	0	.	.	A	5988980	T	A	5988980	3	1	41	1	0	0	0	0	1	0	0	0	11136	1464	51	4	198	4	OR56A5	11	5988980	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	767233	5988980	129017536	469	5456											
CNGA4	1262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6262882	6262882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CNGA4	NM_001037329	exon5	c.A1139T	p.D380V	AAGGAGACATTGG	.	88	34	133	1	.	91	T	6262882	A	T	6262882	3	4	41	1	0	0	0	0	1	0	0	0	3599	275	10	4	1157	4	CNGA4	11	6262882	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	273902	6262882	128743634	470	5457											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6292239	6292239	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCKBR	NM_176875	exon5	c.812-2A>G	.	GTGCTCAGGGGCT	.	40	25	50	0	.	574	G	6292239	A	G	6292239	5	3	41	1	0	0	0	0	0	0	1	0	2881	202	7	2	828	2	CCKBR	11	6292239	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	29357	6292239	128714277	471	5458											
OR2AG1	144125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6806883	6806883	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2AG1	NM_001004489	exon1	c.C615T	p.T205T	TGTGACCTTCCTG	.	104	43	83	0	.	68	T	6806883	C	T	6806883	2	4	41	1	0	0	0	0	0	0	0	1	10984	668	24	3		3	OR2AG1	11	6806883	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	514644	6806883	128199633	472	5459											
OR10A5	144124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6867208	6867208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR10A5	NM_178168	exon1	c.G295T	p.A99S	GGCTGTGCCACTC	.	222	92	237	0	.	71	T	6867208	G	T	6867208	3	4	41	1	0	0	0	0	1	0	0	0	10893	1319	46	3	297	3	OR10A5	11	6867208	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	60325	6867208	128139308	473	5460											
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7981937	7981937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NLRP10	NM_176821	exon2	c.A1222T	p.R408W	GGACCCTGTGCCG	.	57	23	57	0	.	209	A	7981937	T	A	7981937	3	1	41	1	0	0	0	0	1	0	0	0	10472	1579	55	4	749	4	NLRP10	11	7981937	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1114729	7981937	127024579	474	5461											
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9499989	9499989	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF143	NM_003442	exon6	c.A426T	p.T142T	TACCACAGCTTAT	.	75	22	98	0	.	90	T	9499989	A	T	9499989	2	4	41	1	0	0	0	0	0	0	0	1	17729	175	7	4		4	ZNF143	11	9499989	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1518052	9499989	125506527	475	5462											
ZDHHC13	54503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19170802	19170802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZDHHC13	NM_019028	exon5	c.A443C	p.E148A	ATGGAGAGGGATT	.	134	51	135	0	.	90	C	19170802	A	C	19170802	3	2	41	1	0	0	0	0	1	0	0	0	17600	304	11	5	461	5	ZDHHC13	11	19170802	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	9670813	19170802	115835714	476	5463											
ZDHHC13	54503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19170823	19170823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZDHHC13	NM_019028	exon5	c.T464A	p.L155Q	TCCACCTGGCAGT	.	124	55	133	1	.	90	A	19170823	T	A	19170823	3	1	41	1	0	0	0	0	1	0	0	0	17600	1580	55	4	482	4	ZDHHC13	11	19170823	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	21	19170823	115835693	477	5464											
SLC6A5	9152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20652295	20652295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A5	NM_004211	exon10	c.A1558C	p.I520L	TTCGTCATCTTCT	.	134	52	151	0	.	156	C	20652295	A	C	20652295	3	2	41	1	0	0	0	0	1	0	0	0	14687	217	8	5	1596	5	SLC6A5	11	20652295	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1481472	20652295	114354221	478	5465											
KIF18A	81930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	28119476	28119476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF18A	NM_031217	exon2	c.G19T	p.D7Y	ACAGGTCTTCCTC	.	155	64	138	2	.	92	A	28119476	C	A	28119476	3	1	41	1	0	0	0	0	1	0	0	0	8280	913	32	3	2741	3	KIF18A	11	28119476	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	7467181	28119476	106887040	479	5466											
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33358716	33358716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIPK3	NM_001048200	exon4	c.G1317T	p.M439I	AGATATGTCTCAT	.	60	27	91	0	.	336	T	33358716	G	T	33358716	3	4	41	1	0	0	0	0	1	0	0	0	7118	1377	48	3	1327	3	HIPK3	11	33358716	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5239240	33358716	101647800	480	5467											
ELF5	2001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34515128	34515128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ELF5	NM_198381	exon3	c.A283T	p.S95C	GGCCACTGATGTT	.	95	45	117	0	.	227	A	34515128	T	A	34515128	3	1	41	1	0	0	0	0	1	0	0	0	5057	1580	55	4	534	4	ELF5	11	34515128	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1156412	34515128	100491388	481	5468											
OR8H2	390151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55873220	55873220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8H2	NM_001005200	exon1	c.G702T	p.K234N	AGGAAAGCAGAAA	.	182	73	157	1	.	70	T	55873220	G	T	55873220	3	4	41	1	0	0	0	0	1	0	0	0	11238	962	34	3	704	3	OR8H2	11	55873220	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	21358092	55873220	79133296	482	5469											
OR8J3	81168	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55904573	55904573	+	Missense_Mutation	SNP	C	C	A	rs1384094	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8J3	NM_001004064	exon1	c.G622T	p.V208F	AAAAAACCAAATT	.	84	36	48	0	C|0.992;A|0.008	70	A	55904573	C	A	55904573	3	1	41	1	0	0	0	0	1	0	0	0	11242	507	18	3	327	3	OR8J3	11	55904573	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	31353	55904573	79101943	483	5470											
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55904587	55904587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8J3	NM_001004064	exon1	c.C608A	p.A203E	GTTGCTGCAGATA	.	76	33	53	0	.	70	T	55904587	G	T	55904587	3	4	41	1	0	0	0	0	1	0	0	0	11242	1319	46	3	341	3	OR8J3	11	55904587	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	14	55904587	79101929	484	5471											
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56113774	56113774	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8K1	NM_001002907	exon1	c.T260A	p.M87K	CGAAGATGTTAGT	.	149	53	145	0	.	70	A	56113774	T	A	56113774	3	1	41	1	0	0	0	0	1	0	0	0	11243	1464	51	4	262	4	OR8K1	11	56113774	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	209187	56113774	78892742	485	5472											
TCN1	6947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59623413	59623413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCN1	NM_001062	exon6	c.A866T	p.Q289L	AAGACCTGGGCTG	.	264	66	205	1	.	92	A	59623413	T	A	59623413	3	1	41	1	0	0	0	0	1	0	0	0	15703	1580	55	4	451	4	TCN1	11	59623413	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3509639	59623413	75383103	486	5473											
RAB3IL1	5866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61675695	61675695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAB3IL1	NM_001271686	exon2	c.A236G	p.H79R	TCCCTGTGGCCTT	.	19	14	47	0	.	228	C	61675695	T	C	61675695	3	2	41	1	0	0	0	0	1	0	0	0	12937	1696	59	2	1089	2	RAB3IL1	11	61675695	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2052282	61675695	73330821	487	5474											
SLC22A24	283238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62886696	62886696	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001136506	exon3	c.A618T	p.A206A	GAACCCTGCCAAG	.	213	76	205	0	.	.	A	62886696	T	A	62886696	2	1	41	1	0	0	0	0	0	0	0	1	14453	1567	55	4		4	SLC22A24	11	62886696	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1211001	62886696	72119820	488	5475											
FERMT3	83706	ucsc.edu;bcgsc.ca	37	11	63978540	63978540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FERMT3	NM_031471	exon4	c.G411T	p.E137D	CCCCGAGGAGCTG	.	45	4	99	0	.	23	T	63978540	G	T	63978540	3	4	41	1	0	0	0	0	1	0	0	0	5819	991	35	3	421	3	FERMT3	11	63978540	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1091844	63978540	71027976	489	5476											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64527129	64527129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PYGM	NM_001164716	exon1	c.A242G	p.K81R	AGCACCTTGGGGT	.	26	20	51	0	.	92	C	64527129	T	C	64527129	3	2	41	1	0	0	0	0	1	0	0	0	12862	1623	56	2	2366	2	PYGM	11	64527129	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	548589	64527129	70479387	490	5477											
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64575092	64575092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEN1	NM_130800	exon4	c.A730G	p.M244V	ACACCATGAACGC	.	42	31	99	0	.	3017	C	64575092	T	C	64575092	3	2	41	1	0	0	0	0	1	0	0	0	9472	1464	51	2	1145	2	MEN1	11	64575092	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	47963	64575092	70431424	491	5478											
KLC2	64837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66029592	66029592	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLC2	NM_001134775	exon4	c.460-2A>T	.	CTTCCCAGGAGGA	.	109	45	115	0	.	90	T	66029592	A	T	66029592	5	4	41	1	0	0	0	0	0	0	1	0	8334	202	7	4	468	4	KLC2	11	66029592	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1454500	66029592	68976924	492	5479											
ADRBK1	156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67047308	67047308	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADRBK1	NM_001619	exon6	c.442-2A>T	.	TCCCTTAGCCATA	.	176	80	94	0	.	521	T	67047308	A	T	67047308	5	4	41	1	0	0	0	0	0	0	1	0	343	434	15	4	462	4	ADRBK1	11	67047308	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1017716	67047308	67959208	493	5480											
CDK2AP2	10263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67274928	67274928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDK2AP2	NM_005851	exon3	c.A221G	p.Y74C	TCCGTGTAGGTGC	.	215	102	147	1	.	90	C	67274928	T	C	67274928	3	2	41	1	0	0	0	0	1	0	0	0	3139	1638	57	2	167	2	CDK2AP2	11	67274928	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	227620	67274928	67731588	494	5481											
P2RY6	5031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73007940	73007940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	P2RY6	NM_176796	exon4	c.T377A	p.L126Q	GCTACCTGGGCAT	.	38	8	25	0	.	501	A	73007940	T	A	73007940	3	1	41	1	0	0	0	0	1	0	0	0	11354	1580	55	4	379	4	P2RY6	11	73007940	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5733012	73007940	61998576	495	5482											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063253	76063253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRKRIR	NM_004705	exon5	c.T941A	p.I314K	TCAGTTATCATAG	.	387	135	401	1	.	93	T	76063253	A	T	76063253	3	4	41	1	0	0	0	0	1	0	0	0	12526	449	16	4	1348	4	PRKRIR	11	76063253	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3055313	76063253	58943263	496	5483											
THRSP	7069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77775013	77775013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	THRSP	NM_003251	exon1	c.A86G	p.Q29R	TGGAGCAGGTGGT	.	70	32	63	0	.	69	G	77775013	A	G	77775013	3	3	41	1	0	0	0	0	1	0	0	0	15873	188	7	2	88	2	THRSP	11	77775013	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1711760	77775013	57231503	497	5484											
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85622367	85622411	+	In_Frame_Del	DEL	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC83	NM_173556	exon8	c.716_760del	p.239_254del	ATGCTATTCATGA	.	156	15	232	0	.	91	-	85622411	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	-	85622367	7	5	41	1	0	1	0	1	0	0	0	0	2857	1493	52	0	742	0	CCDC83	11	85622367	In_Frame_Del	DEL	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TCGA-CC-A7IH-01A-11D-A33K-10	7847354	85622367	49384149	498	5485											
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88338049	88338049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM5	NM_000842	exon5	c.C1231A	p.L411I	TGTGGAGCCCATA	.	117	52	140	0	.	949	T	88338049	G	T	88338049	3	4	41	1	0	0	0	0	1	0	0	0	6800	971	34	3	2431	3	GRM5	11	88338049	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2715682	88338049	46668467	499	5486											
TYR	7299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911129	88911129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TYR	NM_000372	exon1	c.T8A	p.L3Q	TGCTCCTGGCTGT	.	57	28	103	0	.	92	A	88911129	T	A	88911129	3	1	41	1	0	0	0	0	1	0	0	0	16810	1580	55	4	10	4	TYR	11	88911129	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	573080	88911129	46095387	500	5487											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92498202	92498202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAT3	NM_001008781	exon5	c.T4142C	p.V1381A	AAATTGTAGGGGT	.	115	46	143	0	.	73	C	92498202	T	C	92498202	3	2	41	1	0	0	0	0	1	0	0	0	5691	1638	57	2	4160	2	FAT3	11	92498202	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3587073	92498202	42508314	501	5488											
TRPC6	7225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101375282	101375282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRPC6	NM_004621	exon2	c.G418T	p.A140S	CCACTGCCAACTG	.	97	40	120	0	.	93	A	101375282	C	A	101375282	3	1	41	1	0	0	0	0	1	0	0	0	16580	739	26	3	2425	3	TRPC6	11	101375282	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	8877080	101375282	33631234	502	5489											
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102991298	102991298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DYNC2H1	NM_001377	exon7	c.T1122G	p.N374K	ATATAATCCATAT	.	135	58	136	1	.	68	G	102991298	T	G	102991298	3	3	41	1	0	0	0	0	1	0	0	0	4846	1432	50	5	1148	5	DYNC2H1	11	102991298	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1616016	102991298	32015218	503	5490											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103026215	103026215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DYNC2H1	NM_001377	exon25	c.A3729T	p.K1243N	AGCCAAAGCTGCC	.	125	49	139	0	.	68	T	103026215	A	T	103026215	3	4	41	1	0	0	0	0	1	0	0	0	4846	69	3	4	3827	4	DYNC2H1	11	103026215	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	34917	103026215	31980301	504	5491											
ELMOD1	55531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107526788	107526788	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018712	exon11	c.A828G	p.T276T	GCAAACATTCTGT	.	59	30	84	0	.	.	G	107526788	A	G	107526788	2	3	41	1	0	0	0	0	0	0	0	1	5068	204	8	2		2	ELMOD1	11	107526788	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4500573	107526788	27479728	505	5492											
C11orf65	160140	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108264018	108264018	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C11orf65	NM_152587	exon7	c.T648C	p.A216A	TTCAAAAGCTCTA	.	211	80	310	2	.	91	G	108264018	A	G	108264018	2	3	41	1	0	0	0	0	0	0	0	1	1655	59	3	2		2	C11orf65	11	108264018	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	737230	108264018	26742498	506	5493											
DDX10	1662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108709284	108709284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DDX10	NM_004398	exon14	c.G2077A	p.E693K	ACTGATGAAGGGG	.	186	62	236	0	.	1145	A	108709284	G	A	108709284	3	1	41	1	0	0	0	0	1	0	0	0	4342	1291	45	3	2131	3	DDX10	11	108709284	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	445266	108709284	26297232	507	5494											
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	117109396	117109396	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF214	NM_207343	exon3	c.A187T	p.R63X	AATAACAGAAATG	.	137	58	150	0	.	90	T	117109396	A	T	117109396	4	4	41	1	0	0	0	0	0	1	0	0	13478	180	7	4	193	4	RNF214	11	117109396	Nonsense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8400112	117109396	17897120	508	5495											
DSCAML1	57453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117387274	117387274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSCAML1	NM_020693	exon8	c.T1871A	p.V624E	TTCTGCACGTCAG	.	83	20	130	1	.	159	T	117387274	A	T	117387274	3	4	41	1	0	0	0	0	1	0	0	0	4769	159	6	4	4574	4	DSCAML1	11	117387274	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	277878	117387274	17619242	509	5496											
OR6T1	219874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123814484	123814484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6T1	NM_001005187	exon1	c.A62T	p.H21L	ATGAGGTGGCTAC	.	104	50	137	1	.	69	A	123814484	T	A	123814484	3	1	41	1	0	0	0	0	1	0	0	0	11210	1696	59	4	912	4	OR6T1	11	123814484	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6427210	123814484	11192032	510	5497											
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095466	124095466	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001007249	exon1	c.T69A	p.T23T	AGTGACTGAGTTC	.	126	53	168	0	.	.	A	124095466	T	A	124095466	2	1	41	1	0	0	0	0	0	0	0	1	11235	1567	55	4		4	OR8G2	11	124095466	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	280982	124095466	10911050	511	5498											
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125891234	125891234	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDON	NM_016952	exon3	c.T258C	p.S86S	GTTGAGAGAAAGA	.	58	17	82	0	.	158	G	125891234	A	G	125891234	2	3	41	1	0	0	0	0	0	0	0	1	3170	291	11	2		2	CDON	11	125891234	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1795768	125891234	9115282	512	5499											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133807314	133807314	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IGSF9B	NM_014987	exon5	c.C636T	p.S212S	CTGAATGCTGTAC	.	83	28	104	0	.	68	A	133807314	G	A	133807314	2	1	41	1	0	0	0	0	0	0	0	1	7606	1310	46	3		3	IGSF9B	11	133807314	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	7916080	133807314	1199202	513	5500											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	666812	666812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	B4GALNT3	NM_173593	exon16	c.G2419T	p.D807Y	ATCAAAGACATGG	.	147	54	165	0	.	92	T	666812	G	T	666812	3	4	41	1	0	0	0	0	1	0	0	0	1268	942	33	3	2481	3	B4GALNT3	12	666812	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		666812	133185083	514	5501											
IFFO1	25900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6659920	6659920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFFO1	NM_001039670	exon3	c.G871A	p.A291T	TCAGTGCCAGCTC	.	85	24	121	2	.	68	T	6659920	C	T	6659920	3	4	41	1	0	0	0	0	1	0	0	0	7510	739	26	3	852	3	IFFO1	12	6659920	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5993108	6659920	127191975	515	5502											
ENO2	2026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7026812	7026812	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENO2	NM_001975	exon6	c.G378C	p.R126R	TGAGCGGGAACTG	.	43	16	50	0	.	226	C	7026812	G	C	7026812	2	2	41	1	0	0	0	0	0	0	0	1	5122	1219	43	4		4	ENO2	12	7026812	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	366892	7026812	126825083	516	5503											
A2ML1	144568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8990976	8990976	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	A2ML1	NM_144670	exon9	c.C900T	p.T300T	GGCCACCTTTGAC	.	111	50	197	1	.	93	T	8990976	C	T	8990976	2	4	41	1	0	0	0	0	0	0	0	1	5	668	24	3		3	A2ML1	12	8990976	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1964164	8990976	124860919	517	5504											
PHC1	1911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	9083485	9083485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHC1	NM_004426	exon7	c.C1067A	p.T356K	CACGGACAGCCAC	.	121	36	79	0	.	154	A	9083485	C	A	9083485	3	1	41	1	0	0	0	0	1	0	0	0	11816	478	17	3	1089	3	PHC1	12	9083485	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	92509	9083485	124768410	518	5505											
CD69	969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9907785	9907785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD69	NM_001781	exon3	c.A260G	p.E87G	CAGTCCTCAGAGC	.	103	42	131	0	.	90	C	9907785	T	C	9907785	3	2	41	1	0	0	0	0	1	0	0	0	3031	1551	54	2	351	2	CD69	12	9907785	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	824300	9907785	123944110	519	5506											
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10147839	10147839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLEC1B	NM_016509	exon5	c.A445T	p.I149F	CTTTGATGTACTC	.	40	13	55	0	.	90	A	10147839	T	A	10147839	3	1	41	1	0	0	0	0	1	0	0	0	3506	1464	51	4	252	4	CLEC1B	12	10147839	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	240054	10147839	123704056	520	5507											
PRB2	653247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11546400	11546400	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRB2	NM_006248	exon3	c.A612T	p.P204P	TGGGGGTGGTCCT	.	322	46	369	0	.	22	A	11546400	T	A	11546400	2	1	41	1	0	0	0	0	0	0	0	1	12443	1683	59	4		4	PRB2	12	11546400	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1398561	11546400	122305495	521	5508											
CASC1	55259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	25267703	25267703	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CASC1	NM_001082972	exon13	c.C1672T	p.Q558X	CATCTTGAATCAA	.	113	45	165	0	.	92	A	25267703	G	A	25267703	4	1	41	1	0	0	0	0	0	1	0	0	2660	1299	45	3	686	3	CASC1	12	25267703	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	13721303	25267703	108584192	522	5509											
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26217535	26217535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RASSF8	NM_007211	exon4	c.G208T	p.A70S	CAGTATGCTAGTG	.	100	42	119	0	.	90	T	26217535	G	T	26217535	3	4	41	1	0	0	0	0	1	0	0	0	13092	1319	46	3	214	3	RASSF8	12	26217535	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	949832	26217535	107634360	523	5510											
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	27832961	27832961	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPFIBP1	NM_177444	exon20	c.T1880A	p.L627X	CCCGATTAGGTTG	.	74	39	90	0	.	228	A	27832961	T	A	27832961	4	1	41	1	0	0	0	0	0	1	0	0	12313	1764	61	4	1978	4	PPFIBP1	12	27832961	Nonsense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1615426	27832961	106018934	524	5511											
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32369200	32369200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD1	NM_001714	exon2	c.C233G	p.S78C	CCTTCTCCATCCA	.	150	58	163	0	.	153	G	32369200	C	G	32369200	3	3	41	1	0	0	0	0	1	0	0	0	1428	855	30	4	239	4	BICD1	12	32369200	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4536239	32369200	101482695	525	5512											
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32490444	32490444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD1	NM_001714	exon7	c.A2264G	p.Y755C	ATGAATATGTCAC	.	114	50	130	0	.	153	G	32490444	A	G	32490444	3	3	41	1	0	0	0	0	1	0	0	0	1428	449	16	2	2290	2	BICD1	12	32490444	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	121244	32490444	101361451	526	5513											
LRRK2	120892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40760830	40760830	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK2	NM_198578	exon50	c.G7413A	p.L2471L	CATGCTGGTATTG	.	360	140	429	2	.	533	A	40760830	G	A	40760830	2	1	41	1	0	0	0	0	0	0	0	1	9033	1335	47	3		3	LRRK2	12	40760830	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	8270386	40760830	93091065	527	5514											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49432023	49432023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MLL2	NM_003482	exon34	c.A9116G	p.D3039G	AGGTCATCCAAGT	.	138	59	143	0	.	612	C	49432023	T	C	49432023	3	2	41	1	0	0	0	0	1	0	0	0	9621	1435	50	2	7581	2	MLL2	12	49432023	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8671193	49432023	84419872	528	5515											
KRT5	3852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52913903	52913903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT5	NM_000424	exon1	c.T178A	p.Y60N	TGCCATAGCCACC	.	68	26	81	0	.	90	T	52913903	A	T	52913903	3	4	41	1	0	0	0	0	1	0	0	0	8479	420	15	4	1630	4	KRT5	12	52913903	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3481880	52913903	80937992	529	5516											
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53878895	53878895	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAP3K12	NM_001193511	exon6	c.C1084T	p.L362L	CGGGCAGATGGAG	.	123	52	126	0	.	604	A	53878895	G	A	53878895	2	1	41	1	0	0	0	0	0	0	0	1	9246	933	33	3		3	MAP3K12	12	53878895	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	964992	53878895	79973000	530	5517											
ZBTB39	9880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57397645	57397645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBTB39	NM_014830	exon2	c.G1057C	p.E353Q	TGGGCTCTAGAAC	.	117	48	128	0	.	135	G	57397645	C	G	57397645	3	3	41	1	0	0	0	0	1	0	0	0	17537	922	32	4	1085	4	ZBTB39	12	57397645	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3518750	57397645	76454250	531	5518											
IRAK3	11213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66638446	66638446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRAK3	NM_007199	exon9	c.T1068A	p.D356E	AACAGATGTCTAC	.	101	35	118	0	.	1379	A	66638446	T	A	66638446	3	1	41	1	0	0	0	0	1	0	0	0	7824	1461	51	4	1102	4	IRAK3	12	66638446	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	9240801	66638446	67213449	532	5519											
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72425319	72425319	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPH2	NM_173353	exon11	c.T1317C	p.I439I	GTCAATTACCCGT	.	141	60	156	0	.	93	C	72425319	T	C	72425319	2	2	41	1	0	0	0	0	0	0	0	1	16399	1742	61	2		2	TPH2	12	72425319	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5786873	72425319	61426576	533	5520											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513452	78513452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NAV3	NM_014903	exon15	c.C3476G	p.T1159S	CCAGTACCAGCAG	.	132	56	169	0	.	279	G	78513452	C	G	78513452	3	3	41	1	0	0	0	0	1	0	0	0	10185	507	18	4	3534	4	NAV3	12	78513452	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	6088133	78513452	55338443	534	5521											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82147865	82147865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPFIA2	NM_001220476	exon2	c.C136G	p.L46V	TGTCTAGAAGACG	.	120	49	138	0	.	231	C	82147865	G	C	82147865	3	2	41	1	0	0	0	0	1	0	0	0	12310	933	33	4	3757	4	PPFIA2	12	82147865	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3634413	82147865	51704030	535	5522											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85518207	85518207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRIQ1	NM_001079910	exon17	c.G3917T	p.S1306I	CAAGCAGTATTCC	.	76	32	70	0	.	95	T	85518207	G	T	85518207	3	4	41	1	0	0	0	0	1	0	0	0	9029	1029	36	3	3979	3	LRRIQ1	12	85518207	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3370342	85518207	48333688	536	5523											
KITLG	4254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88910260	88910260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KITLG	NM_003994	exon5	c.A371G	p.K124R	GATTTTTTTAGAT	.	44	22	69	0	.	227	C	88910260	T	C	88910260	3	2	41	1	0	0	0	0	1	0	0	0	8330	1841	64	2	470	2	KITLG	12	88910260	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3392053	88910260	44941635	537	5524											
KERA	11081	broad.mit.edu;bcgsc.ca	37	12	91445249	91445249	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KERA	NM_007035	exon3	c.A933C	p.A311A	TCGTTCTGCAGGC	.	56	27	52	2	.	91	G	91445249	T	G	91445249	2	3	41	1	0	0	0	0	0	0	0	1	8143	1567	55	5		5	KERA	12	91445249	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2534989	91445249	42406646	538	5525											
DCN	1634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	91546950	91546950	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCN	NM_001920	exon6	c.T669A	p.L223L	TTCCGTAAGGGAA	.	82	37	100	0	.	555	T	91546950	A	T	91546950	2	4	41	1	0	0	0	0	0	0	0	1	4297	349	13	4		4	DCN	12	91546950	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	101701	91546950	42304945	539	5526											
BTBD11	121551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108008836	108008836	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BTBD11	NM_001018072	exon7	c.1900-2A>C	.	GTTTATAGGTTGT	.	112	46	151	1	.	93	C	108008836	A	C	108008836	5	2	41	1	0	0	0	0	0	0	1	0	1539	434	15	5	2029	5	BTBD11	12	108008836	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	16461886	108008836	25843059	540	5527											
GIT2	9815	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110421240	110421240	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GIT2	NM_057170	exon6	c.A561G	p.A187A	ATATACTGCCAAT	.	168	72	171	1	.	226	C	110421240	T	C	110421240	2	2	41	1	0	0	0	0	0	0	0	1	6397	1567	55	2		2	GIT2	12	110421240	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2412404	110421240	23430655	541	5528											
IFT81	28981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110565247	110565247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFT81	NM_014055	exon2	c.A62G	p.Y21C	AGAACTATAATTT	.	249	83	249	0	.	91	G	110565247	A	G	110565247	3	3	41	1	0	0	0	0	1	0	0	0	7565	449	16	2	64	2	IFT81	12	110565247	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	144007	110565247	23286648	542	5529											
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	116446847	116446847	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MED13L	NM_015335	exon10	c.A1371G	p.S457S	TAAAGATGAAGAT	.	123	41	122	0	.	232	C	116446847	T	C	116446847	2	2	41	1	0	0	0	0	0	0	0	1	9431	1451	51	2		2	MED13L	12	116446847	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5881600	116446847	17405048	543	5530											
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117710243	117710243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOS1	NM_000620	exon10	c.A1786G	p.T596A	TCTCTGTGCCCAT	.	130	56	141	1	.	154	C	117710243	T	C	117710243	3	2	41	1	0	0	0	0	1	0	0	0	10541	1696	59	2	2598	2	NOS1	12	117710243	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1263396	117710243	16141652	544	5531											
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119554788	119554788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SRRM4	NM_194286	exon4	c.A412T	p.S138C	AAGAAAAGTTCCA	.	60	25	70	0	.	2	T	119554788	A	T	119554788	3	4	41	1	0	0	0	0	1	0	0	0	15170	72	3	4	426	4	SRRM4	12	119554788	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1844545	119554788	14297107	545	5532											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120271925	120271925	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CIT	NM_001206999	exon6	c.T624A	p.A208A	GTGAACAGCCAAA	.	122	45	147	0	.	399	T	120271925	A	T	120271925	2	4	41	1	0	0	0	0	0	0	0	1	3438	175	7	4		4	CIT	12	120271925	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	717137	120271925	13579970	546	5533											
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122413230	122413230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR66	NM_144668	exon18	c.A2852G	p.K951R	AAGGAAAATTCTA	.	156	55	200	0	.	92	G	122413230	A	G	122413230	3	3	41	1	0	0	0	0	1	0	0	0	17314	14	1	2	2977	2	WDR66	12	122413230	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2141305	122413230	11438665	547	5534											
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126138603	126138603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM132B	NM_052907	exon9	c.A2584G	p.K862E	TTACTCAAAAGTG	.	91	44	132	0	.	185	G	126138603	A	G	126138603	3	3	41	1	0	0	0	0	1	0	0	0	16043	131	5	2	2618	2	TMEM132B	12	126138603	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3725373	126138603	7713292	548	5535											
FZD10	11211	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	130648002	130648002	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD10	NM_007197	exon1	c.A515C	p.Q172P	GGCCGCAGCGGCC	.	99	42	98	1	.	658	C	130648002	A	C	130648002	3	2	41	1	0	0	0	0	1	0	0	0	6129	188	7	5	517	5	FZD10	12	130648002	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4509399	130648002	3203893	549	5536											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131456098	131456098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR133	NM_198827	exon4	c.A283G	p.S95G	TGCATCAGCAAGC	.	77	34	85	0	.	191	G	131456098	A	G	131456098	3	3	41	1	0	0	0	0	1	0	0	0	6643	188	7	2	297	2	GPR133	12	131456098	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	808096	131456098	2395797	550	5537											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132393332	132393332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ULK1	NM_003565	exon6	c.G460T	p.A154S	CGCCGCGCCAACC	.	37	19	44	0	.	758	T	132393332	G	T	132393332	3	4	41	1	0	0	0	0	1	0	0	0	16972	1087	38	1	482	1	ULK1	12	132393332	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	937234	132393332	1458563	551	5538											
PUS1	80324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132423731	132423731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PUS1	NM_025215	exon4	c.C455A	p.A152D	CCGCAGCCGGCCA	.	88	42	100	0	.	577	A	132423731	C	A	132423731	3	1	41	1	0	0	0	0	1	0	0	0	12830	739	26	3	469	3	PUS1	12	132423731	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	30399	132423731	1428164	552	5539											
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30066785	30066785	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MTUS2	NM_001033602	exon10	c.T3538C	p.L1180L	CCAGAATTGATGT	.	98	35	99	0	.	218	C	30066785	T	C	30066785	2	2	41	1	0	0	0	0	0	0	0	1	9966	1490	52	2		2	MTUS2	13	30066785	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10		30066785	85103093	553	5540											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35729982	35729982	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBEA	NM_015678	exon19	c.T2517A	p.I839I	GAAAATTCAGAAT	.	90	18	62	0	.	144	A	35729982	T	A	35729982	2	1	41	1	0	0	0	0	0	0	0	1	10187	1771	62	4		4	NBEA	13	35729982	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	5663197	35729982	79439896	554	5541											
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049699	36049699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAB21L1	NM_005584	exon1	c.C577A	p.P193T	GCCAGGGGATGTG	.	34	12	55	0	.	92	T	36049699	G	T	36049699	3	4	41	1	0	0	0	0	1	0	0	0	9141	1232	43	3	506	3	MAB21L1	13	36049699	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	319717	36049699	79120179	555	5542											
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86368800	86368800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLITRK6	NM_032229	exon2	c.T1844G	p.L615R	ATAATCAGAAGTC	.	173	69	194	0	.	137	C	86368800	A	C	86368800	3	2	41	1	0	0	0	0	1	0	0	0	14747	188	7	5	685	5	SLITRK6	13	86368800	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	50319101	86368800	28801078	556	5543											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95858957	95858957	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCC4	NM_005845	exon8	c.C990A	p.I330I	CACGATGATTTTG	.	120	58	168	0	.	515	T	95858957	G	T	95858957	2	4	41	1	0	0	0	0	0	0	0	1	55	1280	45	3		3	ABCC4	13	95858957	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	9490157	95858957	19310921	557	5544											
DZIP1	22873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96237036	96237036	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DZIP1	NM_198968	exon22	c.G2478T	p.V826V	ATTTAGCACATGA	.	123	50	181	0	.	92	A	96237036	C	A	96237036	2	1	41	1	0	0	0	0	0	0	0	1	4863	697	25	3		3	DZIP1	13	96237036	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	378079	96237036	18932842	558	5545											
OXGR1	27199	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	97639601	97639601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OXGR1	NM_080818	exon4	c.C413A	p.P138Q	CTCATTGGGTGAA	.	107	41	150	1	.	70	T	97639601	G	T	97639601	3	4	41	1	0	0	0	0	1	0	0	0	11332	1348	47	3	604	3	OXGR1	13	97639601	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1402565	97639601	17530277	559	5546											
EFNB2	1948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	107145427	107145427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EFNB2	NM_004093	exon5	c.G963A	p.M321I	CGGGGGCATCTCC	.	32	9	32	0	.	91	T	107145427	C	T	107145427	3	4	41	1	0	0	0	0	1	0	0	0	4956	710	25	3	42	3	EFNB2	13	107145427	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	9505826	107145427	8024451	560	5547											
COL4A2	1284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111158834	111158834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A2	NM_001846	exon46	c.T4475A	p.L1492Q	ACCTCCTGGTGAA	.	272	29	325	1	.	95	A	111158834	T	A	111158834	3	1	41	1	0	0	0	0	1	0	0	0	3690	1580	55	4	4653	4	COL4A2	13	111158834	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4013407	111158834	4011044	561	5548											
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111938504	111938504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF7	NM_001113511	exon18	c.A2024G	p.K675R	TTAGTAAGAGCCC	.	78	8	80	0	.	232	G	111938504	A	G	111938504	3	3	41	1	0	0	0	0	1	0	0	0	911	72	3	2	2094	2	ARHGEF7	13	111938504	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	779670	111938504	3231374	562	5549											
OR4K17	390436	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20586546	20586546	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR4K17	NM_001004715	exon1	c.A981C	p.I327I	GAAGATATCCATG	.	70	33	99	1	.	71	C	20586546	A	C	20586546	2	2	41	1	0	0	0	0	0	0	0	1	11071	439	16	5		5	OR4K17	14	20586546	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10		20586546	86762994	563	5550											
CHD8	57680	broad.mit.edu;bcgsc.ca	37	14	21861848	21861848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHD8	NM_001170629	exon31	c.C6106T	p.P2036S	GGGTTGGTCGGCT	.	78	29	99	2	.	277	A	21861848	G	A	21861848	3	1	41	1	0	0	0	0	1	0	0	0	3331	1261	44	3	1667	3	CHD8	14	21861848	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1275302	21861848	85487692	564	5551											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23865974	23865974	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH6	NM_002471	exon19	c.A2221C	p.R741R	CCTTCCTGCTATC	.	110	40	124	0	.	94	G	23865974	T	G	23865974	2	3	41	1	0	0	0	0	0	0	0	1	10038	1579	55	5		5	MYH6	14	23865974	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2004126	23865974	83483566	565	5552											
MYH7	4625	ucsc.edu;bcgsc.ca	37	14	23901694	23901694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH7	NM_000257	exon6	c.T524G	p.L175R	GTGATCAGGATGG	.	121	52	148	2	.	94	C	23901694	A	C	23901694	3	2	41	1	0	0	0	0	1	0	0	0	10039	188	7	5	5423	5	MYH7	14	23901694	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	35720	23901694	83447846	566	5553											
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24806550	24806550	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RIPK3	NM_006871	exon8	c.T1017A	p.S339S	ATTACGAGAGTGC	.	28	13	52	0	.	946	T	24806550	A	T	24806550	2	4	41	1	0	0	0	0	0	0	0	1	13382	291	11	4		4	RIPK3	14	24806550	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	904856	24806550	82542990	567	5554											
NYNRIN	57523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24882219	24882219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NYNRIN	NM_025081	exon7	c.G2659A	p.A887T	AAGCTGGCAGAGG	.	102	47	152	1	.	3	A	24882219	G	A	24882219	3	1	41	1	0	0	0	0	1	0	0	0	10796	1203	42	3	2681	3	NYNRIN	14	24882219	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	75669	24882219	82467321	568	5555											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	31641123	31641123	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECTD1	NM_015382	exon8	c.C1276T	p.Q426X	ACCTTTGACCTCT	.	312	121	352	1	.	570	A	31641123	G	A	31641123	4	1	41	1	0	0	0	0	0	1	0	0	7039	1299	45	3	6700	3	HECTD1	14	31641123	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	6758904	31641123	75708417	569	5556											
ARHGAP5	394	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32560362	32560362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGAP5	NM_001173	exon2	c.A487G	p.I163V	TTATGCATTGATG	.	95	50	104	1	.	94	G	32560362	A	G	32560362	3	3	41	1	0	0	0	0	1	0	0	0	886	217	8	2	489	2	ARHGAP5	14	32560362	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	919239	32560362	74789178	570	5557											
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	34269082	34269082	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NPAS3	NM_001164749	exon12	c.G1569C	p.P523P	TAACCCGGACAGC	.	121	54	152	0	.	93	C	34269082	G	C	34269082	2	2	41	1	0	0	0	0	0	0	0	1	10564	1103	39	4		4	NPAS3	14	34269082	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1708720	34269082	73080458	571	5558											
NPAS3	64067	broad.mit.edu;ucsc.edu	37	14	34270267	34270267	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NPAS3	NM_001164749	exon12	c.C2754G	p.Y918X	CGTCTACAGCAAC	.	100	36	116	1	.	93	G	34270267	C	G	34270267	4	3	41	1	0	0	0	0	0	1	0	0	10564	489	17	4	2855	4	NPAS3	14	34270267	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1185	34270267	73079273	572	5559											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	38724410	38724410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLEC14A	NM_175060	exon1	c.G818A	p.C273Y	GTAGCACATTCGC	.	59	30	77	0	.	94	T	38724410	C	T	38724410	3	4	41	1	0	0	0	0	1	0	0	0	3499	478	17	3	658	3	CLEC14A	14	38724410	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4454143	38724410	68625130	573	5560											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356398	42356398	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRFN5	NM_152447	exon3	c.C570A	p.T190T	GGGGACCTTCTCC	.	91	38	86	0	.	97	A	42356398	C	A	42356398	2	1	41	1	0	0	0	0	0	0	0	1	8941	668	24	3		3	LRFN5	14	42356398	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3631988	42356398	64993142	574	5561											
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55629758	55629758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DLGAP5	NM_014750	exon13	c.C1584G	p.I528M	AAGTTTGATCAGA	.	47	14	72	0	.	92	C	55629758	G	C	55629758	3	2	41	1	0	0	0	0	1	0	0	0	4563	1280	45	4	1079	4	DLGAP5	14	55629758	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	13273360	55629758	51719782	575	5562											
KTN1	3895	ucsc.edu;bcgsc.ca	37	14	56079277	56079277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KTN1	NM_004986	exon2	c.A511G	p.K171E	AAGTCTAAAAATG	.	231	94	221	2	.	1147	G	56079277	A	G	56079277	3	3	41	1	0	0	0	0	1	0	0	0	8585	363	13	2	513	2	KTN1	14	56079277	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	449519	56079277	51270263	576	5563											
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64519465	64519465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYNE2	NM_182914	exon48	c.G8834A	p.C2945Y	AGTTTTGCAGACA	.	139	50	133	1	.	164	A	64519465	G	A	64519465	3	1	41	1	0	0	0	0	1	0	0	0	15443	1319	46	3	9020	3	SYNE2	14	64519465	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	8440188	64519465	42830075	577	5564											
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69256435	69256435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFP36L1	NM_001244701	exon3	c.C1039A	p.L347I	GGAAGAGGAAGGT	.	63	34	96	0	.	91	T	69256435	G	T	69256435	3	4	41	1	0	0	0	0	1	0	0	0	17643	1000	35	3	188	3	ZFP36L1	14	69256435	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4736970	69256435	38093105	578	5565											
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92126218	92126218	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CATSPERB	NM_024764	exon15	c.T1395C	p.F465F	AGAAACAAAAGTA	.	34	13	52	0	.	138	G	92126218	A	G	92126218	2	3	41	1	0	0	0	0	0	0	0	1	2691	127	5	2		2	CATSPERB	14	92126218	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	22869783	92126218	15223322	579	5566											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95560494	95560494	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DICER1	NM_177438	exon25	c.5096-1G>T	.	AACAATCTGAGGG	.	47	17	60	0	.	961	A	95560494	C	A	95560494	5	1	41	1	0	0	0	0	0	0	1	0	4521	927	32	3	689	3	DICER1	14	95560494	Splice_Site	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3434276	95560494	11789046	580	5567											
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707662	96707662	+	Missense_Mutation	SNP	G	G	T	rs201791629	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BDKRB2	NM_000623	exon3	c.G997T	p.V333L	GTGTACGTGATCG	.	99	44	117	0	.	662	T	96707662	G	T	96707662	3	4	41	1	0	0	0	0	1	0	0	0	1393	1145	40	1	1003	1	BDKRB2	14	96707662	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1147168	96707662	10641878	581	5568											
SETD3	84193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	99865385	99865385	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SETD3	NM_032233	exon13	c.A1416G	p.K472K	AATCTCTTTCTCA	.	142	57	148	0	.	514	C	99865385	T	C	99865385	2	2	41	1	0	0	0	0	0	0	0	1	14132	1606	56	2		2	SETD3	14	99865385	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3157723	99865385	7484155	582	5569											
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104460669	104460669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TDRD9	NM_153046	exon10	c.G1181T	p.G394V	CCCTAGGTCTGGG	.	77	29	63	0	.	70	T	104460669	G	T	104460669	3	4	41	1	0	0	0	0	1	0	0	0	15733	1275	44	3	1219	3	TDRD9	14	104460669	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4595284	104460669	2888871	583	5570											
KIF26A	26153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104640574	104640574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF26A	NM_015656	exon11	c.C2120A	p.A707D	CGCCAGCCCAGCA	.	88	41	127	1	.	24	A	104640574	C	A	104640574	3	1	41	1	0	0	0	0	1	0	0	0	8294	739	26	3	2162	3	KIF26A	14	104640574	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	179905	104640574	2708966	584	5571											
TMEM179	388021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105070865	105070865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM179	NM_207379	exon1	c.C214T	p.R72C	TGAAGCGGCAGGC	.	43	19	63	0	.	514	A	105070865	G	A	105070865	3	1	41	1	0	0	0	0	1	0	0	0	16093	1116	39	1	391	1	TMEM179	14	105070865	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	430291	105070865	2278675	585	5572											
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27114454	27114454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABRA5	NM_001165037	exon3	c.T59A	p.I20N	TTTGTATTTCCAT	.	132	45	139	0	.	91	A	27114454	T	A	27114454	3	1	41	1	0	0	0	0	1	0	0	0	6164	1493	52	4	61	4	GABRA5	15	27114454	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10		27114454	75416938	586	5573											
CHRM5	1133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34355220	34355220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHRM5	NM_012125	exon3	c.T302G	p.L101R	GGAGTCTGGCTTG	.	138	54	172	0	.	91	G	34355220	T	G	34355220	3	3	41	1	0	0	0	0	1	0	0	0	3380	1580	55	5	304	5	CHRM5	15	34355220	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7240766	34355220	68176172	587	5574											
GJD2	57369	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35045130	35045130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GJD2	NM_020660	exon2	c.A515G	p.K172R	AGCTCCTTAACCT	.	169	67	233	2	.	90	C	35045130	T	C	35045130	3	2	41	1	0	0	0	0	1	0	0	0	6417	1609	56	2	454	2	GJD2	15	35045130	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	689910	35045130	67486262	588	5575											
ATPBD4	89978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35830633	35830633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATPBD4	NM_001141972	exon3	c.A154T	p.T52S	CCACTGTCTGATA	.	157	70	151	0	.	90	A	35830633	T	A	35830633	3	1	41	1	0	0	0	0	1	0	0	0	1202	1667	58	4	867	4	ATPBD4	15	35830633	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	785503	35830633	66700759	589	5576											
FAM98B	283742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38773693	38773693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM98B	NM_001042429	exon7	c.A930C	p.E310D	AAATGAATTGATG	.	150	60	149	0	.	515	C	38773693	A	C	38773693	3	2	41	1	0	0	0	0	1	0	0	0	5657	98	4	5	956	5	FAM98B	15	38773693	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2943060	38773693	63757699	590	5577											
FRMD5	84978	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44202176	44202176	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FRMD5	NM_032892	exon5	c.T331A	p.Y111N	CTAAATACCTGGA	.	45	15	61	1	.	91	T	44202176	A	T	44202176	3	4	41	1	0	0	0	0	1	0	0	0	6053	405	14	4	1421	4	FRMD5	15	44202176	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5428483	44202176	58329216	591	5578											
GATM	2628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45668899	45668899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GATM	NM_001482	exon2	c.A188C	p.D63A	GGGCAGTCCTTGG	.	100	37	99	0	.	90	G	45668899	T	G	45668899	3	3	41	1	0	0	0	0	1	0	0	0	6263	1667	58	5	1115	5	GATM	15	45668899	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1466723	45668899	56862493	592	5579											
SPATA5L1	79029	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	45694903	45694903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPATA5L1	NM_024063	exon1	c.G276C	p.R92S	CCGGAGGAGTCTC	.	14	8	10	0	.	94	C	45694903	G	C	45694903	3	2	41	1	0	0	0	0	1	0	0	0	15011	1165	41	4	278	4	SPATA5L1	15	45694903	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	26004	45694903	56836489	593	5580											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	48741033	48741033	+	Missense_Mutation	SNP	G	G	T	rs145082616	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FBN1	NM_000138	exon46	c.C5603A	p.T1868K	CCAACTGTGTCAA	.	69	7	60	0	G|1.000;A|0.000	92	T	48741033	G	T	48741033	3	4	41	1	0	0	0	0	1	0	0	0	5702	1377	48	3	3096	3	FBN1	15	48741033	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	3046130	48741033	53790359	594	5581											
GABPB1	2553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50578223	50578223	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABPB1	NM_002041	exon8	c.A1077T	p.P359P	TTATTTTGGATGA	.	104	45	130	0	.	153	A	50578223	T	A	50578223	2	1	41	1	0	0	0	0	0	0	0	1	6158	1799	63	4		4	GABPB1	15	50578223	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1837190	50578223	51953169	595	5582											
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55971629	55971629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTG	NM_173814	exon7	c.G988T	p.V330F	ATTCAACAAATGA	.	104	44	88	0	.	92	A	55971629	C	A	55971629	3	1	41	1	0	0	0	0	1	0	0	0	12638	478	17	3	2520	3	PRTG	15	55971629	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5393406	55971629	46559763	596	5583											
CLN6	54982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68504126	68504126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLN6	NM_017882	exon4	c.A373T	p.S125C	GGATGCTGGCACC	.	57	30	105	0	.	91	A	68504126	T	A	68504126	3	1	41	1	0	0	0	0	1	0	0	0	3545	1580	55	4	578	4	CLN6	15	68504126	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	12532497	68504126	34027266	597	5584											
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	68609680	68609680	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITGA11	NM_001004439	exon21	c.G2638T	p.E880X	CACACTCAATGCT	.	101	39	130	0	.	538	A	68609680	C	A	68609680	4	1	41	1	0	0	0	0	0	1	0	0	7874	835	29	3	968	3	ITGA11	15	68609680	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	105554	68609680	33921712	598	5585											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73564819	73564819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEO1	NM_001172623	exon19	c.G2881C	p.V961L	AAGGATGTGACTG	.	91	35	123	0	.	116	C	73564819	G	C	73564819	3	2	41	1	0	0	0	0	1	0	0	0	10336	1377	48	4	2955	4	NEO1	15	73564819	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4955139	73564819	28966573	599	5586											
ISLR2	57611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74426996	74426996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ISLR2	NM_001130138	exon4	c.C1901G	p.P634R	AGGCCCCTGACCC	.	89	40	112	0	.	90	G	74426996	C	G	74426996	3	3	41	1	0	0	0	0	1	0	0	0	7859	681	24	4	1903	4	ISLR2	15	74426996	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	862177	74426996	28104396	600	5587											
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78837269	78837269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA4	NM_001102667	exon6	c.G346A	p.D116N	CTGTGTGATATCA	.	99	39	129	0	.	90	A	78837269	G	A	78837269	3	1	41	1	0	0	0	0	1	0	0	0	12669	1290	45	3	364	3	PSMA4	15	78837269	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4410273	78837269	23694123	601	5588											
ADAMTS7	11173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79080627	79080627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS7	NM_014272	exon8	c.C1268T	p.A423V	GGAGCGGCGTCGT	.	84	41	121	1	.	226	A	79080627	G	A	79080627	3	1	41	1	0	0	0	0	1	0	0	0	271	1203	42	3	3860	3	ADAMTS7	15	79080627	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	243358	79080627	23450765	602	5589	35	2									
ADAMTS7	11173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79080629	79080629	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS7	NM_014272	exon8	c.C1266T	p.D422D	AGCGGCGTCGTAC	.	85	41	120	1	.	226	A	79080629	G	A	79080629	2	1	41	1	0	0	0	0	0	0	0	1	271	1136	40	1		1	ADAMTS7	15	79080629	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2	79080629	23450763	603	5590	35	2									
KIAA1024	23251	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79749155	79749155	+	Missense_Mutation	SNP	C	C	A	rs3750000	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1024	NM_015206	exon2	c.C666A	p.N222K	CGAAAACGAGTCC	.	138	59	131	1	C|0.960;T|0.040	183	A	79749155	C	A	79749155	3	1	41	1	0	0	0	0	1	0	0	0	8205	535	19	1	668	1	KIAA1024	15	79749155	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	668526	79749155	22782237	604	5591											
CPEB1	64506	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	83226572	83226572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CPEB1	NM_030594	exon4	c.A544T	p.S182C	AGGGGCTGCTAGA	.	117	54	161	1	.	136	A	83226572	T	A	83226572	3	1	41	1	0	0	0	0	1	0	0	0	3800	1580	55	4	1192	4	CPEB1	15	83226572	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	3477417	83226572	19304820	605	5592											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88472454	88472454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NTRK3	NM_001012338	exon17	c.T2101A	p.S701T	CTCTGGACATGCC	.	162	70	197	0	.	3538	T	88472454	A	T	88472454	3	4	41	1	0	0	0	0	1	0	0	0	10708	275	10	4	434	4	NTRK3	15	88472454	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5245882	88472454	14058938	606	5593											
WDR93	56964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	90272996	90272996	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR93	NM_020212	exon11	c.A1206G	p.K402K	GGATAAAGCTGGT	.	93	5	135	0	.	24	G	90272996	A	G	90272996	2	3	41	1	0	0	0	0	0	0	0	1	17337	69	3	2		2	WDR93	15	90272996	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1800542	90272996	12258396	607	5594											
FURIN	5045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	91423153	91423153	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FURIN	NM_002569	exon12	c.C1315T	p.Q439X	CTGGCCCAGAATT	.	122	56	174	0	.	1083	T	91423153	C	T	91423153	4	4	41	1	0	0	0	0	0	1	0	0	6099	595	21	3	1357	3	FURIN	15	91423153	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1150157	91423153	11108239	608	5595											
ALDH1A3	220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101438327	101438327	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALDH1A3	NM_000693	exon8	c.C820T	p.L274L	AGCAATCTGAAGC	.	165	22	181	1	.	651	T	101438327	C	T	101438327	2	4	41	1	0	0	0	0	0	0	0	1	492	912	32	3		3	ALDH1A3	15	101438327	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	10015174	101438327	1093065	609	5596											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101523888	101523888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK1	NM_024652	exon4	c.G417T	p.L139F	GGAATTGCTTGAG	.	65	24	89	0	.	602	T	101523888	G	T	101523888	3	4	41	1	0	0	0	0	1	0	0	0	9032	1310	46	3	427	3	LRRK1	15	101523888	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	85561	101523888	1007504	610	5597											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101595197	101595197	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK1	NM_024652	exon27	c.C4101A	p.A1367A	AATAGCCTACCAG	.	125	57	156	0	.	602	A	101595197	C	A	101595197	2	1	41	1	0	0	0	0	0	0	0	1	9032	668	24	3		3	LRRK1	15	101595197	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	71309	101595197	936195	611	5598											
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2499281	2499281	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCNF	NM_001761	exon12	c.1219-2A>T	.	CTGTCTAGGTCCC	.	60	25	82	0	.	658	T	2499281	A	T	2499281	5	4	41	1	0	0	0	0	0	0	1	0	2922	434	15	4	1263	4	CCNF	16	2499281	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10		2499281	87855472	612	5599											
MEFV	4210	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3306451	3306451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEFV	NM_000243	exon1	c.A137T	p.Q46L	GCTCTCTGGATCT	.	138	67	136	1	.	228	A	3306451	T	A	3306451	3	1	41	1	0	0	0	0	1	0	0	0	9459	1580	55	4	2248	4	MEFV	16	3306451	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	807170	3306451	87048302	613	5600											
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	8988707	8988707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	USP7	NM_003470	exon29	c.G3045T	p.E1015D	AAAATGCTCGCCC	.	88	33	104	0	.	661	A	8988707	C	A	8988707	3	1	41	1	0	0	0	0	1	0	0	0	17085	796	28	3	275	3	USP7	16	8988707	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5682256	8988707	81366046	614	5601											
ERCC4	2072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	14020498	14020498	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ERCC4	NM_005236	exon3	c.A469T	p.K157X	AAAAACAAACGTG	.	80	31	87	0	.	665	T	14020498	A	T	14020498	4	4	41	1	0	0	0	0	0	1	0	0	5215	131	5	4	479	4	ERCC4	16	14020498	Nonsense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5031791	14020498	76334255	615	5602											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14341108	14341108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MKL2	NM_014048	exon12	c.C1991T	p.P664L	GCCAGCCCGTCTC	.	72	26	99	0	.	95	T	14341108	C	T	14341108	3	4	41	1	0	0	0	0	1	0	0	0	9602	623	22	3	2029	3	MKL2	16	14341108	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	320610	14341108	76013645	616	5603											
ARL6IP1	23204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	18810100	18810100	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARL6IP1	NM_015161	exon2	c.G93A	p.L31L	AGCCATCAGCATC	.	120	48	132	0	.	90	T	18810100	C	T	18810100	2	4	41	1	0	0	0	0	0	0	0	1	942	813	29	3		3	ARL6IP1	16	18810100	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4468992	18810100	71544653	617	5604											
C16orf62	57020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19640035	19640035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf62	NM_020314	exon17	c.A1727C	p.N576T	TTCTCAACGAAGC	.	82	26	107	0	.	69	C	19640035	A	C	19640035	3	2	41	1	0	0	0	0	1	0	0	0	1825	43	2	5	1526	5	C16orf62	16	19640035	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	829935	19640035	70714718	618	5605											
ACSM5	54988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20432662	20432663	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACSM5	NM_017888	exon5	c.706_707insC	p.A236fs	ACCGGGGCCCCCA	.	66	29	86	0	.	70	C	20432663	-	C	20432662	7	5	41	1	0	1	1	0	0	0	0	0	187	1203	42	0	720	0	ACSM5	16	20432662	Frame_Shift_Ins	INS	-	TCGA-CC-A7IH-01A-11D-A33K-10	792627	20432662	69922091	619	5606											
NSMCE1	197370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27268833	27268833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NSMCE1	NM_145080	exon2	c.A59G	p.Q20R	AGCAACTGGAGGA	.	106	49	146	0	.	90	C	27268833	T	C	27268833	3	2	41	1	0	0	0	0	1	0	0	0	10675	1580	55	2	769	2	NSMCE1	16	27268833	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6836171	27268833	63085920	620	5607											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27472839	27472839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GTF3C1	NM_001520	exon37	c.G6162T	p.K2054N	CCTTGGCTTTCTC	.	45	18	68	0	.	94	A	27472839	C	A	27472839	3	1	41	1	0	0	0	0	1	0	0	0	6872	796	28	3	171	3	GTF3C1	16	27472839	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	204006	27472839	62881914	621	5608											
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28137133	28137141	+	In_Frame_Del	DEL	CGGCAGTCG	CGGCAGTCG	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	CGGCAGTCG	CGGCAGTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	XPO6	NM_015171	exon13	c.1635_1643del	p.545_548del	AGCCGCCGGCAGT	.	51	17	71	0	.	227	-	28137141	CGGCAGTCG	-	28137133	7	5	41	1	0	1	0	1	0	0	0	0	17445	652	23	0	1782	0	XPO6	16	28137133	In_Frame_Del	DEL	CGGCAGTCG	TCGA-CC-A7IH-01A-11D-A33K-10	664294	28137133	62217620	622	5609											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30749727	30749727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SRCAP	NM_006662	exon34	c.G8366A	p.G2789E	GCCCGGGAAGCCC	.	66	9	79	0	.	94	A	30749727	G	A	30749727	3	1	41	1	0	0	0	0	1	0	0	0	15134	1174	41	3	8492	3	SRCAP	16	30749727	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2612594	30749727	59605026	623	5610											
C16orf93	90835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30771751	30771751	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf93	NM_001195620	exon4	c.T323A	p.L108Q	CACCCTAGCTCCA	.	98	35	115	0	.	90	T	30771751	A	T	30771751	3	4	41	1	0	0	0	0	1	0	0	0	1846	420	15	4	696	4	C16orf93	16	30771751	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	22024	30771751	59583002	624	5611											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47622887	47622887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHKB	NM_000293	exon10	c.C942G	p.S314R	TTTTAGCCAGACA	.	73	26	68	0	.	154	G	47622887	C	G	47622887	3	3	41	1	0	0	0	0	1	0	0	0	11845	738	26	4	1039	4	PHKB	16	47622887	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	16851136	47622887	42731866	625	5612											
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53337778	53337778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHD9	NM_025134	exon31	c.A5860T	p.N1954Y	CATCCAAATCCAG	.	185	82	208	1	.	272	T	53337778	A	T	53337778	3	4	41	1	0	0	0	0	1	0	0	0	3332	14	1	4	5978	4	CHD9	16	53337778	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5714891	53337778	37016975	626	5613											
RBL2	5934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53515713	53515713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBL2	NM_005611	exon21	c.A3215C	p.K1072T	GAGAAAAGATTTT	.	111	57	121	0	.	841	C	53515713	A	C	53515713	3	2	41	1	0	0	0	0	1	0	0	0	13110	72	3	5	3297	5	RBL2	16	53515713	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	177935	53515713	36839040	627	5614											
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57760018	57760018	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC135	NM_032269	exon13	c.C1797A	p.P599P	GAAGCCCGCGGAG	.	239	115	294	0	.	90	A	57760018	C	A	57760018	2	1	41	1	0	0	0	0	0	0	0	1	2769	639	23	1		1	CCDC135	16	57760018	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4244305	57760018	32594735	628	5615											
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	69703941	69703943	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NFAT5	NM_001113178	exon8	c.1431_1433del	p.477_478del	GAAAGGAGAAGAA	.	235	85	308	0	.	90	-	69703943	AGA	-	69703941	7	5	41	1	0	1	0	1	0	0	0	0	10360	291	11	0	1461	0	NFAT5	16	69703941	In_Frame_Del	DEL	AGA	TCGA-CC-A7IH-01A-11D-A33K-10	11943923	69703941	20650812	629	5616											
PDPR	55066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70190550	70190550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PDPR	NM_017990	exon19	c.C2408A	p.A803D	GCAGTGCCTACAG	.	83	34	111	1	.	135	A	70190550	C	A	70190550	3	1	41	1	0	0	0	0	1	0	0	0	11689	739	26	3	2474	3	PDPR	16	70190550	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	486609	70190550	20164203	630	5617											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76509861	76509861	+	Missense_Mutation	SNP	G	G	A	rs150806968		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CNTNAP4	NM_138994	exon10	c.G1462A	p.G488S	GAACACGGTGGGG	.	75	29	112	0	G|1.000;A|0.000	70	A	76509861	G	A	76509861	3	1	41	1	0	0	0	0	1	0	0	0	3649	1116	39	1	1736	1	CNTNAP4	16	76509861	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	6319311	76509861	13844892	631	5618											
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83998905	83998905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OSGIN1	NM_182981	exon6	c.G727A	p.V243I	AACGTGGTCCTCG	.	35	15	42	0	.	68	A	83998905	G	A	83998905	3	1	41	1	0	0	0	0	1	0	0	0	11289	1261	44	3	1002	3	OSGIN1	16	83998905	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	7489044	83998905	6355848	632	5619											
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84459339	84459339	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATP2C2	NM_014861	exon11	c.920-2A>T	.	TTCCCCAGGTCTC	.	168	64	152	0	.	91	T	84459339	A	T	84459339	5	4	41	1	0	0	0	0	0	0	1	0	1144	202	7	4	960	4	ATP2C2	16	84459339	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	460434	84459339	5895414	633	5620											
FOXF1	2294	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	86544400	86544400	+	Nonsense_Mutation	SNP	C	C	A	rs121909336		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXF1	NM_001451	exon1	c.C225A	p.Y75X	GATCTACCAGTTC	.	121	43	136	0	.	226	A	86544400	C	A	86544400	4	1	41	1	0	0	0	0	0	1	0	0	6005	518	18	3	227	3	FOXF1	16	86544400	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2085061	86544400	3810353	634	5621											
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88705453	88705453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL17C	NM_013278	exon2	c.T71A	p.L24H	CCTCCCTCAGGGG	.	71	8	79	0	.	90	A	88705453	T	A	88705453	3	1	41	1	0	0	0	0	1	0	0	0	7636	1551	54	4	77	4	IL17C	16	88705453	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2161053	88705453	1649300	635	5622											
OR1A1	8383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	3119514	3119514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR1A1	NM_014565	exon1	c.C600A	p.Y200X	GATGTACCTAGGG	.	85	36	99	0	.	70	A	3119514	C	A	3119514	4	1	41	1	0	0	0	0	0	1	0	0	10949	518	18	3	602	3	OR1A1	17	3119514	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10		3119514	78075696	636	5623											
SPATA22	84690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3349813	3349813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPATA22	NM_032598	exon7	c.A755G	p.Y252C	CGCCAATACTTCA	.	409	155	423	0	.	90	C	3349813	T	C	3349813	3	2	41	1	0	0	0	0	1	0	0	0	15007	1406	49	2	348	2	SPATA22	17	3349813	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	230299	3349813	77845397	637	5624											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3937451	3937451	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZZEF1	NM_015113	exon40	c.T6442C	p.L2148L	CTGGCAAAAGACG	.	202	78	199	0	.	93	G	3937451	A	G	3937451	2	3	41	1	0	0	0	0	0	0	0	1	18252	11	1	2		2	ZZEF1	17	3937451	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	587638	3937451	77257759	638	5625											
ZMYND15	84225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	4649179	4649179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZMYND15	NM_001267822	exon14	c.C2147A	p.A716E	GCCCGGCGCCCGG	.	245	129	315	0	.	90	A	4649179	C	A	4649179	3	1	41	1	0	0	0	0	1	0	0	0	17705	768	27	1	2173	1	ZMYND15	17	4649179	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	711728	4649179	76546031	639	5626											
SAT2	112483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7530941	7530941	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAT2	NM_133491	exon1	c.C13A	p.R5R	GGATCCGCACGGA	.	89	31	101	0	.	90	T	7530941	G	T	7530941	2	4	41	1	0	0	0	0	0	0	0	1	13852	1086	38	1		1	SAT2	17	7530941	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2881762	7530941	73664269	640	5627											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7644139	7644139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH2	NM_020877	exon10	c.G1518A	p.R506R	CAAGCGGACTTAT	.	52	18	51	0	.	102	A	7644139	G	A	7644139	2	1	41	1	0	0	0	0	0	0	0	1	4602	1161	41	3		3	DNAH2	17	7644139	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	113198	7644139	73551071	641	5628											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7660453	7660453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH2	NM_020877	exon12	c.T1949A	p.L650Q	AGCGGCTGCTGTT	.	73	29	146	0	.	102	A	7660453	T	A	7660453	3	1	41	1	0	0	0	0	1	0	0	0	4602	1580	55	4	1995	4	DNAH2	17	7660453	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	16314	7660453	73534757	642	5629											
ALOX12B	242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7989531	7989531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALOX12B	NM_001139	exon2	c.A155T	p.Q52L	GTGTACTGGCCCA	.	74	33	102	0	.	226	A	7989531	T	A	7989531	3	1	41	1	0	0	0	0	1	0	0	0	537	1580	55	4	2006	4	ALOX12B	17	7989531	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	329078	7989531	73205679	643	5630											
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8215862	8215862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF15	NM_025014	exon2	c.G505C	p.D169H	GATGCAGATGCCC	.	38	14	39	0	.	230	C	8215862	G	C	8215862	3	2	41	1	0	0	0	0	1	0	0	0	898	942	33	4	507	4	ARHGEF15	17	8215862	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	226331	8215862	72979348	644	5631											
RCVRN	5957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9804355	9804355	+	Silent	SNP	C	C	T	rs144667256		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RCVRN	NM_002903	exon2	c.G444A	p.P148P	CTTTTCCGGCGTG	.	99	49	101	0	C|1.000;T|0.000	90	T	9804355	C	T	9804355	2	4	41	1	0	0	0	0	0	0	0	1	13186	639	23	1		1	RCVRN	17	9804355	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1588493	9804355	71390855	645	5632											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10212854	10212854	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH13	NM_003802	exon34	c.C4950G	p.V1650V	GCCCTGGACCGTG	.	47	21	49	0	.	6	C	10212854	G	C	10212854	2	2	41	1	0	0	0	0	0	0	0	1	10032	1161	41	4		4	MYH13	17	10212854	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	408499	10212854	70982356	646	5633											
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10351254	10351254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH4	NM_017533	exon34	c.C4846A	p.L1616M	TCCTCAGAGCATC	.	155	55	191	1	.	102	T	10351254	G	T	10351254	3	4	41	1	0	0	0	0	1	0	0	0	10037	933	33	3	1001	3	MYH4	17	10351254	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	138400	10351254	70843956	647	5634											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11696953	11696953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH9	NM_001372	exon42	c.A8195G	p.Q2732R	AAATCCAGACAGA	.	102	40	111	0	.	168	G	11696953	A	G	11696953	3	3	41	1	0	0	0	0	1	0	0	0	4608	188	7	2	8361	2	DNAH9	17	11696953	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1345699	11696953	69498257	648	5635											
ZNF287	57336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16470686	16470686	+	Silent	SNP	T	T	C	rs201476319	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF287	NM_020653	exon2	c.A360G	p.A120A	AGTCACTGCTTCC	.	85	35	98	1	T|0.999;G|0.001	90	C	16470686	T	C	16470686	2	2	41	1	0	0	0	0	0	0	0	1	17822	1567	55	2		2	ZNF287	17	16470686	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4773733	16470686	64724524	649	5636											
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17698925	17698925	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAI1	NM_030665	exon3	c.A2663T	p.Q888L	GCATGCAGGACCC	.	66	33	80	0	.	91	T	17698925	A	T	17698925	3	4	41	1	0	0	0	0	1	0	0	0	13007	188	7	4	2665	4	RAI1	17	17698925	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1228239	17698925	63496285	650	5637											
MYO15A	51168	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18061879	18061879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO15A	NM_016239	exon51	c.G9010T	p.A3004S	GAGGACGCCCTGG	.	190	80	203	2	.	97	T	18061879	G	T	18061879	3	4	41	1	0	0	0	0	1	0	0	0	10063	1087	38	1	9208	1	MYO15A	17	18061879	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	362954	18061879	63133331	651	5638											
MFAP4	4239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19289686	19289686	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MFAP4	NM_001198695	exon3	c.C249G	p.P83P	GCCCGAGGGGTAG	.	137	59	137	0	.	514	C	19289686	G	C	19289686	2	2	41	1	0	0	0	0	0	0	0	1	9517	987	35	4		4	MFAP4	17	19289686	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1227807	19289686	61905524	652	5639											
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28534791	28534791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A4	NM_001045	exon13	c.T1609A	p.W537R	TCCTCCAGAACCA	.	117	43	205	0	.	94	T	28534791	A	T	28534791	3	4	41	1	0	0	0	0	1	0	0	0	14686	188	7	4	295	4	SLC6A4	17	28534791	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	9245105	28534791	52660419	653	5640											
MYO1D	4642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	31048069	31048069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO1D	NM_015194	exon15	c.C1885T	p.R629C	TCTGGCGGAAGGC	.	125	10	155	0	.	137	A	31048069	G	A	31048069	3	1	41	1	0	0	0	0	1	0	0	0	10071	1116	39	1	1167	1	MYO1D	17	31048069	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2513278	31048069	50147141	654	5641											
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33767910	33767910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLFN13	NM_144682	exon6	c.T2398A	p.F800I	TTTCAAAGAAGCA	.	114	52	92	0	.	91	T	33767910	A	T	33767910	3	4	41	1	0	0	0	0	1	0	0	0	14736	72	3	4	299	4	SLFN13	17	33767910	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2719841	33767910	47427300	655	5642											
CCL14	6358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34311402	34311402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCL14	NM_032962	exon3	c.A214G	p.N72D	GGCTGTTGGTCTC	.	98	38	111	0	.	90	C	34311402	T	C	34311402	3	2	41	1	0	0	0	0	1	0	0	0	2885	1812	63	2	123	2	CCL14	17	34311402	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	543492	34311402	46883808	656	5643											
RARA	5914	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	38512266	38512266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RARA	NM_000964	exon9	c.G1177A	p.E393K	GGGGCTGAGCGGG	.	177	79	174	1	.	1083	A	38512266	G	A	38512266	3	1	41	1	0	0	0	0	1	0	0	0	13052	1291	45	3	1374	3	RARA	17	38512266	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	4200864	38512266	42682944	657	5644											
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39084545	39084545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT23	NM_015515	exon6	c.A866G	p.E289G	TTCAGTTCGTGGA	.	57	28	89	0	.	91	C	39084545	T	C	39084545	3	2	41	1	0	0	0	0	1	0	0	0	8460	1783	62	2	418	2	KRT23	17	39084545	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	572279	39084545	42110665	658	5645											
KRT34	3885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39538297	39538297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT34	NM_021013	exon1	c.G328A	p.A110T	AGCTGGCCAGGCG	.	179	69	175	0	.	90	T	39538297	C	T	39538297	3	4	41	1	0	0	0	0	1	0	0	0	8471	739	26	3	1010	3	KRT34	17	39538297	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	453752	39538297	41656913	659	5646											
TTC25	83538	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	40117322	40117322	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTC25	.	.	.	.	TATAGGAGGCCTT	.	135	50	135	0	.	23	G	40117322	A	G	40117322	1	3	41	0	1	0	0	0	0	0	0	0	16690	295	11	2		2	TTC25	17	40117322	RNA	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	579025	40117322	41077888	660	5647											
COASY	80347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40715081	40715081	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COASY	NM_001042532	exon3	c.G528C	p.L176L	GCGACTGGCCTCG	.	106	52	121	1	.	115	C	40715081	G	C	40715081	2	2	41	1	0	0	0	0	0	0	0	1	3652	1335	47	4		4	COASY	17	40715081	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	597759	40715081	40480129	661	5648											
MLX	6945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40721541	40721541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MLX	NM_170607	exon6	c.G555T	p.Q185H	CATTCAGTTTTTG	.	79	32	83	0	.	90	T	40721541	G	T	40721541	3	4	41	1	0	0	0	0	1	0	0	0	9635	1020	36	3	577	3	MLX	17	40721541	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	6460	40721541	40473669	662	5649											
RPL27	6155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41150829	41150829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RPL27	NM_000988	exon2	c.G62A	p.R21H	CCGGACGCAAAGC	.	42	19	50	0	.	90	A	41150829	G	A	41150829	3	1	41	1	0	0	0	0	1	0	0	0	13575	1087	38	1	64	1	RPL27	17	41150829	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	429288	41150829	40044381	663	5650											
IFI35	3430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41166312	41166312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFI35	NM_005533	exon7	c.G863T	p.G288V	AGTCAGGCTAGGG	.	52	29	80	0	.	91	T	41166312	G	T	41166312	3	4	41	1	0	0	0	0	1	0	0	0	7516	1203	42	3	889	3	IFI35	17	41166312	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	15483	41166312	40028898	664	5651											
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41349033	41349033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBR1	NM_031862	exon16	c.A1936G	p.T646A	AGTGGGACCCAGT	.	187	11	201	0	.	130	G	41349033	A	G	41349033	3	3	41	1	0	0	0	0	1	0	0	0	10200	275	10	2	1994	2	NBR1	17	41349033	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	182721	41349033	39846177	665	5652											
SLC4A1	6521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42328926	42328926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC4A1	NM_000342	exon18	c.C2342T	p.S781F	ATGCGGGACAGGA	.	135	47	153	0	.	92	A	42328926	G	A	42328926	3	1	41	1	0	0	0	0	1	0	0	0	14650	1174	41	3	405	3	SLC4A1	17	42328926	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	979893	42328926	38866284	666	5653											
FMNL1	752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43311537	43311537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FMNL1	NM_005892	exon6	c.C584A	p.S195Y	CCTCCTCCGTGCC	.	63	11	89	0	.	91	A	43311537	C	A	43311537	3	1	41	1	0	0	0	0	1	0	0	0	5951	855	30	3	606	3	FMNL1	17	43311537	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	982611	43311537	37883673	667	5654											
LRRC46	90506	broad.mit.edu;bcgsc.ca	37	17	45911898	45911898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRC46	NM_033413	exon3	c.G224A	p.G75E	TGCAAGGGGTAAC	.	90	7	113	1	.	91	A	45911898	G	A	45911898	3	1	41	1	0	0	0	0	1	0	0	0	9003	1246	43	3	234	3	LRRC46	17	45911898	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2600361	45911898	35283312	668	5655											
NME1	4830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49239133	49239133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NME1	NM_198175	exon6	c.A461T	p.E154V	AGAAGGAGATCGG	.	104	53	131	0	.	251	T	49239133	A	T	49239133	3	4	41	1	0	0	0	0	1	0	0	0	10489	304	11	4	479	4	NME1	17	49239133	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3327235	49239133	31956077	669	5656											
OR4D2	124538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56247411	56247411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR4D2	NM_001004707	exon1	c.A395G	p.Y132C	TCCGCTATGTCAC	.	73	28	74	0	.	114	G	56247411	A	G	56247411	3	3	41	1	0	0	0	0	1	0	0	0	11056	449	16	2	397	2	OR4D2	17	56247411	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	7008278	56247411	24947799	670	5657											
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56384317	56384317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BZRAP1	NM_004758	exon25	c.A4996G	p.K1666E	CATCCTTGTCCCC	.	43	17	48	0	.	229	C	56384317	T	C	56384317	3	2	41	1	0	0	0	0	1	0	0	0	1577	1821	63	2	605	2	BZRAP1	17	56384317	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	136906	56384317	24810893	671	5658											
GDPD1	284161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57351120	57351120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GDPD1	NM_182569	exon10	c.A931T	p.N311Y	TTACATAACTTTT	.	65	25	44	0	.	90	T	57351120	A	T	57351120	3	4	41	1	0	0	0	0	1	0	0	0	6323	362	13	4	1020	4	GDPD1	17	57351120	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	966803	57351120	23844090	672	5659											
NACA2	342538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	59667968	59667968	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NACA2	NM_199290	exon1	c.A574T	p.R192X	TTGCTCTCGACAC	.	110	43	109	0	.	91	A	59667968	T	A	59667968	4	1	41	1	0	0	0	0	0	1	0	0	10134	1559	54	4	77	4	NACA2	17	59667968	Nonsense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2316848	59667968	21527242	673	5660											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61566056	61566056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACE	NM_000789	exon16	c.T2353G	p.W785G	CTGTTATGGGCAT	.	70	29	68	0	.	94	G	61566056	T	G	61566056	3	3	41	1	0	0	0	0	1	0	0	0	136	1464	51	5	2618	5	ACE	17	61566056	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1898088	61566056	19629154	674	5661											
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61957713	61957713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GH2	NM_002059	exon5	c.T622C	p.C208R	AGCGGCACTGCAC	.	91	11	114	0	.	93	G	61957713	A	G	61957713	3	3	41	1	0	0	0	0	1	0	0	0	6368	159	6	2	123	2	GH2	17	61957713	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	391657	61957713	19237497	675	5662											
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987231	61987231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSHL1	NM_022579	exon5	c.T509A	p.L170H	TGCTTGAGGGTCT	.	150	71	137	0	.	90	T	61987231	A	T	61987231	3	4	41	1	0	0	0	0	1	0	0	0	3942	304	11	4	163	4	CSHL1	17	61987231	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	29518	61987231	19207979	676	5663											
COG1	9382	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71196782	71196782	+	Missense_Mutation	SNP	G	G	A	rs149528257	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COG1	NM_018714	exon6	c.G1148A	p.R383Q	GAATCCGGGACGC	.	123	54	143	1	G|1.000;A|0.000	91	A	71196782	G	A	71196782	3	1	41	1	0	0	0	0	1	0	0	0	3657	1116	39	1	1170	1	COG1	17	71196782	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	9209551	71196782	9998428	677	5664											
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74921070	74921070	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAT5B	NM_198955	exon8	c.C1081A	p.R361R	CCAGGCCGGGGAA	.	54	20	78	0	.	93	A	74921070	C	A	74921070	2	1	41	1	0	0	0	0	0	0	0	1	9549	643	23	1		1	MGAT5B	17	74921070	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3724288	74921070	6274140	678	5665											
AFMID	125061	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76183458	76183458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AFMID	NM_001145526	exon1	c.G7C	p.D3H	ATGATGGATGTGT	.	100	43	107	1	.	136	C	76183458	G	C	76183458	3	2	41	1	0	0	0	0	1	0	0	0	362	1174	41	4	9	4	AFMID	17	76183458	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1262388	76183458	5011752	679	5666											
AZI1	22994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79170793	79170793	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AZI1	NM_014984	exon14	c.G1710C	p.V570V	CCGCATCACAGAC	.	240	109	240	0	.	136	G	79170793	C	G	79170793	2	3	41	1	0	0	0	0	0	0	0	1	1240	813	29	4		4	AZI1	17	79170793	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2987335	79170793	2024417	680	5667											
FN3KRP	79672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80674715	80674715	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FN3KRP	NM_024619	exon1	c.C84T	p.G28G	CCAGGGCCGGAGC	.	449	206	586	2	.	115	T	80674715	C	T	80674715	2	4	41	1	0	0	0	0	0	0	0	1	5964	726	26	3		3	FN3KRP	17	80674715	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1503922	80674715	520495	681	5668											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5397253	5397253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPB41L3	NM_012307	exon18	c.C2645A	p.A882E	GGCTGTGCTGCAG	.	81	24	90	0	.	95	T	5397253	G	T	5397253	3	4	41	1	0	0	0	0	1	0	0	0	5154	1319	46	3	638	3	EPB41L3	18	5397253	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		5397253	72679995	682	5669											
IMPA2	3613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12009936	12009936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IMPA2	NM_014214	exon3	c.C285A	p.S95R	CCACAGCCCGACG	.	92	42	101	0	.	226	A	12009936	C	A	12009936	3	1	41	1	0	0	0	0	1	0	0	0	7723	738	26	3	295	3	IMPA2	18	12009936	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	6612683	12009936	66067312	683	5670											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13113583	13113583	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CEP192	NM_032142	exon41	c.7048-2A>T	.	TTTCGTAGGTCTC	.	70	32	62	0	.	27	T	13113583	A	T	13113583	5	4	41	1	0	0	0	0	0	0	1	0	3251	434	15	4	7204	4	CEP192	18	13113583	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1103647	13113583	64963665	684	5671											
MC5R	4161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13826194	13826194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MC5R	NM_005913	exon1	c.A430C	p.I144L	GTCACCATCTTCT	.	84	32	105	0	.	526	C	13826194	A	C	13826194	3	2	41	1	0	0	0	0	1	0	0	0	9367	217	8	5	432	5	MC5R	18	13826194	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	712611	13826194	64251054	685	5672											
HRH4	59340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22057255	22057255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HRH4	NM_021624	exon3	c.T902C	p.L301S	GGAGATTAGCCAA	.	142	55	172	0	.	92	C	22057255	T	C	22057255	3	2	41	1	0	0	0	0	1	0	0	0	7358	1764	61	2	912	2	HRH4	18	22057255	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	8231061	22057255	56019993	686	5673											
ZNF521	25925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22805628	22805628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF521	NM_015461	exon4	c.T2254A	p.Y752N	ACCTATAGACTTT	.	82	36	78	1	.	275	T	22805628	A	T	22805628	3	4	41	1	0	0	0	0	1	0	0	0	17962	420	15	4	1701	4	ZNF521	18	22805628	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	748373	22805628	55271620	687	5674											
KCTD1	284252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	24126984	24126984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCTD1	NM_001142730	exon1	c.A1517T	p.Q506L	GGCGGCTGGGGGC	.	26	15	26	0	.	91	A	24126984	T	A	24126984	3	1	41	1	0	0	0	0	1	0	0	0	8096	1580	55	4	1100	4	KCTD1	18	24126984	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1321356	24126984	53950264	688	5675											
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29793483	29793483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEP1B	NM_005925	exon11	c.A1540C	p.N514H	ATGTCCAATCAGC	.	89	35	89	0	.	92	C	29793483	A	C	29793483	3	2	41	1	0	0	0	0	1	0	0	0	9476	130	5	5	1582	5	MEP1B	18	29793483	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5666499	29793483	48283765	689	5676											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50923756	50923756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCC	NM_005215	exon18	c.A2767T	p.T923S	ATGGTAACAAAAA	.	145	60	184	0	.	225	T	50923756	A	T	50923756	3	4	41	1	0	0	0	0	1	0	0	0	4282	43	2	4	2837	4	DCC	18	50923756	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	21130273	50923756	27153492	690	5677											
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	53303052	53303052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCF4	NM_001243226	exon1	c.A77T	p.Y26F	TTTGAGTAATTTG	.	116	40	120	0	.	523	A	53303052	T	A	53303052	3	1	41	1	0	0	0	0	1	0	0	0	15692	1653	57	4		4	TCF4	18	53303052	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2379296	53303052	24774196	691	5678											
MALT1	10892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56414872	56414872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MALT1	NM_006785	exon17	c.A2273G	p.H758R	CATTCCATGGTGT	.	95	30	95	1	.	660	G	56414872	A	G	56414872	3	3	41	1	0	0	0	0	1	0	0	0	9202	217	8	2	2339	2	MALT1	18	56414872	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3111820	56414872	21662376	692	5679											
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77896097	77896097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADNP2	NM_014913	exon4	c.A2801G	p.H934R	CCGTCCATTTGGT	.	78	31	57	0	.	140	G	77896097	A	G	77896097	3	3	41	1	0	0	0	0	1	0	0	0	324	217	8	2	2811	2	ADNP2	18	77896097	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	21481225	77896097	181151	693	5680											
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1434882	1434882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DAZAP1	NM_018959	exon12	c.G1195C	p.V399L	CACAACGTGCAAG	.	80	29	96	0	.	153	C	1434882	G	C	1434882	3	2	41	1	0	0	0	0	1	0	0	0	4244	1145	40	4	1334	4	DAZAP1	19	1434882	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		1434882	57694101	694	5681											
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2810300	2810300	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	THOP1	NM_003249	exon10	c.1456-2A>T	.	CCCTGCAGGCGGA	.	45	19	61	0	.	92	T	2810300	A	T	2810300	5	4	41	1	0	0	0	0	0	0	1	0	15868	202	7	4	1492	4	THOP1	19	2810300	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1375418	2810300	56318683	695	5682											
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4510630	4510630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLIN4	NM_001080400	exon3	c.G3300T	p.K1100N	AAGGCCCTTGGTA	.	63	30	65	0	.	68	A	4510630	C	A	4510630	3	1	41	1	0	0	0	0	1	0	0	0	12092	680	24	3	789	3	PLIN4	19	4510630	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1700330	4510630	54618353	696	5683											
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5455751	5455751	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNRF4	NM_181710	exon1	c.C249T	p.V83V	GGCAGTCAAAGCC	.	25	11	31	0	.	135	T	5455751	C	T	5455751	2	4	41	1	0	0	0	0	0	0	0	1	18211	813	29	3		3	ZNRF4	19	5455751	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	945121	5455751	53673232	697	5684											
CCL25	6370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	8117950	8117950	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCL25	NM_001201359	exon2	c.T17A	p.L6Q	GGCTCCTGGCCTG	.	46	22	71	0	.	90	A	8117950	T	A	8117950	3	1	41	1	0	0	0	0	1	0	0	0	2897	1580	55	4	19	4	CCL25	19	8117950	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2662199	8117950	51011033	698	5685											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9048117	9048117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC16	NM_024690	exon5	c.A33514G	p.I11172V	AAGAAATAGTCAG	.	71	28	112	0	.	566	C	9048117	T	C	9048117	3	2	41	1	0	0	0	0	1	0	0	0	9973	1406	49	2	10329	2	MUC16	19	9048117	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	930167	9048117	50080866	699	5686											
RDH8	50700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10129508	10129508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RDH8	NM_015725	exon3	c.G424T	p.V142F	CGTCTCGTCAAAG	.	77	25	81	0	.	94	T	10129508	G	T	10129508	3	4	41	1	0	0	0	0	1	0	0	0	13196	1145	40	1	374	1	RDH8	19	10129508	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1081391	10129508	48999475	700	5687											
ICAM5	7087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10404581	10404581	+	Missense_Mutation	SNP	G	G	T	rs147604357	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ICAM5	NM_003259	exon7	c.G1673T	p.R558L	ACCCTCGGGGCTC	.	41	19	52	0	G|0.999;A|0.000	153	T	10404581	G	T	10404581	3	4	41	1	0	0	0	0	1	0	0	0	7483	1116	39	1	1699	1	ICAM5	19	10404581	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	275073	10404581	48724402	701	5688											
ECSIT	51295	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11618657	11618657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ECSIT	NM_016581	exon6	c.A805G	p.S269G	CGGGACTCTGGAT	.	60	21	59	2	.	91	C	11618657	T	C	11618657	3	2	41	1	0	0	0	0	1	0	0	0	4900	1551	54	2	502	2	ECSIT	19	11618657	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1214076	11618657	47510326	702	5689											
NANOS3	342977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13988465	13988465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NANOS3	NM_001098622	exon1	c.T403A	p.Y135N	CAGGGCTACACCT	.	52	29	77	0	.	69	A	13988465	T	A	13988465	3	1	41	1	0	0	0	0	1	0	0	0	10153	1522	53	4	405	4	NANOS3	19	13988465	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2369808	13988465	45140518	703	5690											
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14029727	14029727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CC2D1A	NM_017721	exon10	c.G1021T	p.V341L	CCAGAGGTGCCCC	.	167	64	211	0	.	90	T	14029727	G	T	14029727	3	4	41	1	0	0	0	0	1	0	0	0	2726	1261	44	3	1059	3	CC2D1A	19	14029727	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	41262	14029727	45099256	704	5691											
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14772862	14772862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMR3	NM_032571	exon4	c.G268A	p.G90R	AACTTCCTTCGAC	.	109	47	122	0	.	528	T	14772862	C	T	14772862	3	4	41	1	0	0	0	0	1	0	0	0	5106	690	24	3	1742	3	EMR3	19	14772862	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	743135	14772862	44356121	705	5692											
SLC1A6	6511	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	15083653	15083653	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC1A6	NM_001272087	exon4	c.C70T	p.Q24X	GCCGCTGCAGCCA	.	107	48	106	1	.	186	A	15083653	G	A	15083653	4	1	41	1	0	0	0	0	0	1	0	0	14436	1328	46	3	1660	3	SLC1A6	19	15083653	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	310791	15083653	44045330	706	5693											
CCDC105	126402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15122107	15122107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC105	NM_173482	exon1	c.A470G	p.Q157R	TGCGCCAGCGCGA	.	73	26	58	0	.	91	G	15122107	A	G	15122107	3	3	41	1	0	0	0	0	1	0	0	0	2740	188	7	2	472	2	CCDC105	19	15122107	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	38454	15122107	44006876	707	5694											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15281192	15281192	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOTCH3	NM_000435	exon27	c.T5064C	p.S1688S	GTGACCAGAGGCC	.	51	24	86	0	.	855	G	15281192	A	G	15281192	2	3	41	1	0	0	0	0	0	0	0	1	10550	175	7	2		2	NOTCH3	19	15281192	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	159085	15281192	43847791	708	5695											
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17441186	17441186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANO8	NM_020959	exon9	c.T1121C	p.L374P	AGCATGAGCAAGA	.	74	31	92	0	.	93	G	17441186	A	G	17441186	3	3	41	1	0	0	0	0	1	0	0	0	703	304	11	2	2617	2	ANO8	19	17441186	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	2159994	17441186	41687797	709	5696											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18273890	18273890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PIK3R2	NM_005027	exon10	c.A1223G	p.E408G	GCCACGAGTCTCT	.	147	50	178	0	.	1311	G	18273890	A	G	18273890	3	3	41	1	0	0	0	0	1	0	0	0	11919	304	11	2	1257	2	PIK3R2	19	18273890	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	832704	18273890	40855093	710	5697											
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21477081	21477081	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF708	NM_021269	exon4	c.T687A	p.C229X	TTTTCCACATTCT	.	32	15	27	0	.	516	T	21477081	A	T	21477081	4	4	41	1	0	0	0	0	0	1	0	0	18109	157	6	4	1008	4	ZNF708	19	21477081	Nonsense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3203191	21477081	37651902	711	5698											
ZNF676	163223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22375842	22375842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF676	NM_001001411	exon2	c.C106A	p.H36N	TCTCATGTCTCTT	.	63	14	107	1	.	90	T	22375842	G	T	22375842	3	4	41	1	0	0	0	0	1	0	0	0	18080	1377	48	3	1668	3	ZNF676	19	22375842	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	898761	22375842	36753141	712	5699											
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35823773	35823773	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD22	NM_001185100	exon3	c.A358T	p.R120W	GGGCTGAGGATGG	.	76	26	89	0	.	526	T	35823773	A	T	35823773	3	4	41	1	0	0	0	0	1	0	0	0	2985	295	11	4	364	4	CD22	19	35823773	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	13447931	35823773	23305210	713	5700											
APLP1	333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36370026	36370026	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APLP1	NM_001024807	exon16	c.C1764A	p.I588I	GCTGATCATGGGA	.	21	9	44	0	.	92	A	36370026	C	A	36370026	2	1	41	1	0	0	0	0	0	0	0	1	778	816	29	3		3	APLP1	19	36370026	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	546253	36370026	22758957	714	5701											
HKR1	284459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37854185	37854185	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HKR1	NM_181786	exon6	c.A1488T	p.P496P	GAAGCCATTTGTA	.	128	50	103	0	.	92	T	37854185	A	T	37854185	2	4	41	1	0	0	0	0	0	0	0	1	7194	204	8	4		4	HKR1	19	37854185	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1484159	37854185	21274798	715	5702											
YIF1B	90522	broad.mit.edu;bcgsc.ca	37	19	38798334	38798334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	YIF1B	NM_001039672	exon6	c.G598A	p.E200K	GCACCTCCAGGGT	.	63	27	97	2	.	68	T	38798334	C	T	38798334	3	4	41	1	0	0	0	0	1	0	0	0	17473	864	30	3	439	3	YIF1B	19	38798334	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	944149	38798334	20330649	716	5703											
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41071395	41071395	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTBN4	NM_020971	exon28	c.G5982A	p.R1994R	GGCGCGGGTGCCT	.	116	48	110	0	.	94	A	41071395	G	A	41071395	2	1	41	1	0	0	0	0	0	0	0	1	15120	1219	43	3		3	SPTBN4	19	41071395	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	2273061	41071395	18057588	717	5704											
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41133127	41133127	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LTBP4	.	.	.	.	TGAGGACGATGGT	.	44	13	45	0	.	93	T	41133127	C	T	41133127	2	4	41	1	0	0	0	0	0	0	0	1	9076	535	19	1		1	LTBP4	19	41133127	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	61732	41133127	17995856	718	5705											
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42510881	42510881	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIK5	NM_002088	exon15	c.T1953C	p.P651P	CTCCACAGGCACC	.	49	17	59	0	.	90	G	42510881	A	G	42510881	2	3	41	1	0	0	0	0	0	0	0	1	6777	175	7	2		2	GRIK5	19	42510881	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1377754	42510881	16618102	719	5706											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42795109	42795109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CIC	NM_015125	exon10	c.C2189G	p.S730W	TGTATTCGGACAA	.	104	46	109	0	.	591	G	42795109	C	G	42795109	3	3	41	1	0	0	0	0	1	0	0	0	3424	893	31	4	2227	4	CIC	19	42795109	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	284228	42795109	16333874	720	5707											
CEACAM1	634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43013273	43013273	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CEACAM1	NM_001712	exon9	c.A1569G	p.V523V	CTTTTTTACTTCT	.	126	61	154	0	.	515	C	43013273	T	C	43013273	2	2	41	1	0	0	0	0	0	0	0	1	3187	1741	61	2		2	CEACAM1	19	43013273	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	218164	43013273	16115710	721	5708											
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223324	44223324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRGC	NM_019612	exon2	c.C614A	p.A205D	GGGAGGCCGGCGT	.	34	14	33	0	.	70	A	44223324	C	A	44223324	3	1	41	1	0	0	0	0	1	0	0	0	7838	739	26	3	616	3	IRGC	19	44223324	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1210051	44223324	14905659	722	5709											
LYPD5	284348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44306498	44306498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LYPD5	NM_001031749	exon1	c.G35T	p.C12F	AAGAGGCAGAGCA	.	38	15	68	0	.	90	A	44306498	C	A	44306498	3	1	41	1	0	0	0	0	1	0	0	0	9113	710	25	3	740	3	LYPD5	19	44306498	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	83174	44306498	14822485	723	5710											
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44892183	44892183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF285	NM_152354	exon4	c.A224C	p.Q75P	CAAATCTGCCAGC	.	175	67	197	0	.	94	G	44892183	T	G	44892183	3	3	41	1	0	0	0	0	1	0	0	0	17819	1580	55	5	1552	5	ZNF285	19	44892183	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	585685	44892183	14236800	724	5711											
NOVA2	4858	broad.mit.edu;mdanderson.org	37	19	46444123	46444123	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOVA2	NM_002516	exon4	c.G477A	p.Q159Q	TCCTGACTGTTCC	.	10	3	32	0	.	226	T	46444123	C	T	46444123	2	4	41	1	0	0	0	0	0	0	0	1	10555	564	20	3		3	NOVA2	19	46444123	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1551940	46444123	12684860	725	5712											
PNMAL1	55228	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46974216	46974216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PNMAL1	NM_018215	exon2	c.T77C	p.L26S	GTGACCAACAAGG	.	101	38	109	2	.	68	G	46974216	A	G	46974216	3	3	41	1	0	0	0	0	1	0	0	0	12157	131	5	2	1272	2	PNMAL1	19	46974216	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	530093	46974216	12154767	726	5713											
CABP5	56344	broad.mit.edu;bcgsc.ca	37	19	48537602	48537602	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CABP5	NM_019855	exon5	c.T366A	p.D122E	CTCCCCATCTCCA	.	75	5	103	0	.	91	T	48537602	A	T	48537602	3	4	41	1	0	0	0	0	1	0	0	0	2534	214	8	4	163	4	CABP5	19	48537602	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1563386	48537602	10591381	727	5714											
BCAT2	587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49309901	49309901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BCAT2	NM_001190	exon3	c.G173C	p.G58A	GTCTTCCCAAACA	.	60	22	60	0	.	91	G	49309901	C	G	49309901	3	3	41	1	0	0	0	0	1	0	0	0	1355	623	22	4	1041	4	BCAT2	19	49309901	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	772299	49309901	9819082	728	5715											
ZNF473	25888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50549039	50549039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF473	NM_015428	exon5	c.A1339G	p.N447D	CACCTTAATGAAC	.	104	45	106	1	.	91	G	50549039	A	G	50549039	3	3	41	1	0	0	0	0	1	0	0	0	17928	362	13	2	1353	2	ZNF473	19	50549039	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1239138	50549039	8579944	729	5716											
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51022208	51022208	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRC4B	NM_001080457	exon3	c.C762T	p.S254S	GCGCAGGCTGGTG	.	66	21	77	0	.	205	A	51022208	G	A	51022208	2	1	41	1	0	0	0	0	0	0	0	1	9007	1194	42	3		3	LRRC4B	19	51022208	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	473169	51022208	8106775	730	5717											
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51128790	51128790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYT3	NM_032298	exon6	c.G1434T	p.E478D	CCGCCCCTCGCTG	.	84	27	114	0	.	155	A	51128790	C	A	51128790	3	1	41	1	0	0	0	0	1	0	0	0	15472	680	24	3	350	3	SYT3	19	51128790	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	106582	51128790	8000193	731	5718											
SIGLEC7	27036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51645871	51645871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIGLEC7	NM_016543	exon1	c.A245T	p.N82I	CAAACAACCCAGC	.	95	9	139	0	.	153	T	51645871	A	T	51645871	3	4	41	1	0	0	0	0	1	0	0	0	14313	43	2	4	247	4	SIGLEC7	19	51645871	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	517081	51645871	7483112	732	5719											
HAS1	3036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52219555	52219555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HAS1	NM_001523	exon4	c.G1015T	p.D339Y	GCCGGTCATCCCC	.	103	38	163	0	.	92	A	52219555	C	A	52219555	3	1	41	1	0	0	0	0	1	0	0	0	6961	826	29	3	729	3	HAS1	19	52219555	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	573684	52219555	6909428	733	5720											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53303548	53303548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF28	NM_006969	exon4	c.A1550G	p.H517R	CCAGTATGAACTC	.	65	21	104	0	.	91	C	53303548	T	C	53303548	3	2	41	1	0	0	0	0	1	0	0	0	17810	1464	51	2	610	2	ZNF28	19	53303548	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1083993	53303548	5825435	734	5721											
LILRB3	11025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54721082	54721082	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRB3	NM_001081450	exon13	c.T1779C	p.D593D	GGTCACATCCTGG	.	166	80	176	0	.	93	G	54721082	A	G	54721082	2	3	41	1	0	0	0	0	0	0	0	1	8792	214	8	2		2	LILRB3	19	54721082	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1417534	54721082	4407901	735	5722											
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803142	54803142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.C535T	p.R179W	TGGCCCGGGATGA	.	130	47	174	1	.	91	A	54803142	G	A	54803142	3	1	41	1	0	0	0	0	1	0	0	0	8786	1115	39	1	800	1	LILRA3	19	54803142	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	82060	54803142	4325841	736	5723	36	3									
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803146	54803146	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.A531G	p.S177S	CCGGGATGACCCA	.	129	45	166	1	.	91	C	54803146	T	C	54803146	2	2	41	1	0	0	0	0	0	0	0	1	8786	1451	51	2		2	LILRA3	19	54803146	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4	54803146	4325837	737	5724	36	3									
LILRA3	11026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54803147	54803147	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.C530G	p.S177X	CGGGATGACCCAC	.	129	46	167	0	.	91	C	54803147	G	C	54803147	4	2	41	1	0	0	0	0	0	1	0	0	8786	1294	45	4	805	4	LILRA3	19	54803147	Nonsense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1	54803147	4325836	738	5725	36	3									
U2AF2	11338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56173908	56173908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	U2AF2	NM_001012478	exon6	c.G527T	p.G176V	GCCTGGGGGGGCT	.	131	52	156	1	.	91	T	56173908	G	T	56173908	3	4	41	1	0	0	0	0	1	0	0	0	16820	1232	43	3	549	3	U2AF2	19	56173908	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	1370761	56173908	2955075	739	5726											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu	37	19	57327366	57327366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PEG3	NM_001146184	exon9	c.A2444G	p.H815R	CTCTGATGGTTGA	.	148	6	177	0	.	164	C	57327366	T	C	57327366	3	2	41	1	0	0	0	0	1	0	0	0	11720	1464	51	2	2326	2	PEG3	19	57327366	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1153458	57327366	1801617	740	5727											
ZIM3	114026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57646378	57646378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZIM3	NM_052882	exon5	c.G1327T	p.G443X	TTTGTCCAGTATG	.	127	50	143	0	.	92	A	57646378	C	A	57646378	4	1	41	1	0	0	0	0	0	1	0	0	17682	603	21	3	95	3	ZIM3	19	57646378	Nonsense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	319012	57646378	1482605	741	5728											
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58452722	58452722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF256	NM_005773	exon3	c.A1454G	p.H485R	CCAGTATGAACTT	.	56	21	60	0	.	92	C	58452722	T	C	58452722	3	2	41	1	0	0	0	0	1	0	0	0	17796	1464	51	2	433	2	ZNF256	19	58452722	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	806344	58452722	676261	742	5729											
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59022230	59022230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC27A5	NM_012254	exon2	c.C756T	p.L252L	ATGGCTGAGGTAG	.	52	25	55	0	.	90	A	59022230	G	A	59022230	2	1	41	1	0	0	0	0	0	0	0	1	14529	1277	45	3		3	SLC27A5	19	59022230	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	569508	59022230	106753	743	5730											
TRIM28	10155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59057222	59057222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRIM28	NM_005762	exon3	c.A545G	p.Q182R	CGCACCAGCGGGT	.	123	48	124	1	.	870	G	59057222	A	G	59057222	3	3	41	1	0	0	0	0	1	0	0	0	16499	188	7	2	555	2	TRIM28	19	59057222	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	34992	59057222	71761	744	5731											
SOX12	6666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	306791	306791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SOX12	NM_006943	exon1	c.G223A	p.G75S	CGCCTGGGCCGCC	.	123	51	155	0	.	514	A	306791	G	A	306791	3	1	41	1	0	0	0	0	1	0	0	0	14943	1232	43	3	225	3	SOX12	20	306791	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		306791	62718729	745	5732											
STK35	140901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2097911	2097911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STK35	NM_080836	exon3	c.A1492G	p.M498V	ACTTCCATGTCTG	.	80	40	127	0	.	334	G	2097911	A	G	2097911	3	3	41	1	0	0	0	0	1	0	0	0	15300	217	8	2	1502	2	STK35	20	2097911	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1791120	2097911	60927609	746	5733											
C20orf194	25943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3274839	3274839	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf194	NM_001009984	exon25	c.T2184C	p.P728P	CAGCACAGGAAGA	.	61	26	61	1	.	68	G	3274839	A	G	3274839	2	3	41	1	0	0	0	0	0	0	0	1	2099	175	7	2		2	C20orf194	20	3274839	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1176928	3274839	59750681	747	5734											
SIGLEC1	6614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3674934	3674934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIGLEC1	NM_023068	exon12	c.G3190A	p.V1064I	TATAGACACCCTC	.	122	47	193	1	.	167	T	3674934	C	T	3674934	3	4	41	1	0	0	0	0	1	0	0	0	14305	478	17	3	1979	3	SIGLEC1	20	3674934	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	400095	3674934	59350586	748	5735											
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4155893	4155893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SMOX	NM_175839	exon2	c.T191C	p.V64A	GCCGTGTGCAGAG	.	95	36	106	0	.	153	C	4155893	T	C	4155893	3	2	41	1	0	0	0	0	1	0	0	0	14803	1696	59	2	193	2	SMOX	20	4155893	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	480959	4155893	58869627	749	5736											
SLC23A2	9962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	4837746	4837746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC23A2	NM_203327	exon17	c.A1825G	p.I609V	TTATAATGTTCAT	.	79	40	124	2	.	92	C	4837746	T	C	4837746	3	2	41	1	0	0	0	0	1	0	0	0	14463	1464	51	2	131	2	SLC23A2	20	4837746	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	681853	4837746	58187774	750	5737											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9288511	9288511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCB4	NM_182797	exon2	c.T50G	p.L17W	CCTTTTTGCAAGA	.	80	51	80	0	.	274	G	9288511	T	G	9288511	3	3	41	1	0	0	0	0	1	0	0	0	12030	1821	63	5	52	5	PLCB4	20	9288511	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	4450765	9288511	53737009	751	5738											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9352961	9352961	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCB4	NM_182797	exon9	c.T597A	p.I199I	TGAAATTGAGCCC	.	165	80	186	0	.	274	A	9352961	T	A	9352961	2	1	41	1	0	0	0	0	0	0	0	1	12030	1800	63	4		4	PLCB4	20	9352961	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	64450	9352961	53672559	752	5739											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9525119	9525119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PAK7	NM_177990	exon8	c.T1766C	p.F589S	GCACAGAAACCAA	.	139	48	169	0	.	1434	G	9525119	A	G	9525119	3	3	41	1	0	0	0	0	1	0	0	0	11405	246	9	2	405	2	PAK7	20	9525119	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	172158	9525119	53500401	753	5740											
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18491619	18491619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEC23B	NM_032985	exon2	c.A140G	p.E47G	TGAAAGAACGTCC	.	239	106	216	0	.	91	G	18491619	A	G	18491619	3	3	41	1	0	0	0	0	1	0	0	0	13992	246	9	2	142	2	SEC23B	20	18491619	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8966500	18491619	44533901	754	5741											
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20144825	20144825	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf26	NM_015585	exon11	c.T1158A	p.A386A	CTCAGCTGCTTTT	.	60	19	77	0	.	94	A	20144825	T	A	20144825	2	1	41	1	0	0	0	0	0	0	0	1	2106	1567	55	4		4	C20orf26	20	20144825	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1653206	20144825	42880695	755	5742											
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20269371	20269371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf26	NM_015585	exon23	c.T2915C	p.I972T	ACGACATAGCCAT	.	166	66	218	0	.	94	C	20269371	T	C	20269371	3	2	41	1	0	0	0	0	1	0	0	0	2106	1406	49	2	3033	2	C20orf26	20	20269371	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	124546	20269371	42756149	756	5743											
NANP	140838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25596957	25596957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NANP	NM_152667	exon2	c.G351T	p.M117I	AGTAAGCATGGCT	.	89	37	121	0	.	90	A	25596957	C	A	25596957	3	1	41	1	0	0	0	0	1	0	0	0	10154	710	25	3	399	3	NANP	20	25596957	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5327586	25596957	37428563	757	5744											
TM9SF4	9777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30738606	30738606	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TM9SF4	NM_014742	exon12	c.G1173T	p.V391V	CAGGGTGTTTGGC	.	110	50	133	0	.	514	T	30738606	G	T	30738606	2	4	41	1	0	0	0	0	0	0	0	1	15977	1364	48	3		3	TM9SF4	20	30738606	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5141649	30738606	32286914	758	5745											
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31023559	31023580	+	Frame_Shift_Del	DEL	AGGCTGACACTAGAGAAGCTGC	AGGCTGACACTAGAGAAGCTGC	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	AGGCTGACACTAGAGAAGCTGC	AGGCTGACACTAGAGAAGCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASXL1	NM_015338	exon12	c.3044_3065del	p.1015_1022del	GCAGTGAGGCTGA	.	61	24	75	0	.	2057	-	31023580	AGGCTGACACTAGAGAAGCTGC	-	31023559	7	5	41	1	0	1	0	1	0	0	0	0	1066	304	11	0	3100	0	ASXL1	20	31023559	Frame_Shift_Del	DEL	AGGCTGACACTAGAGAAGCTGC	TCGA-CC-A7IH-01A-11D-A33K-10	284953	31023559	32001961	759	5746											
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	33324500	33324500	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NCOA6	NM_014071	exon12	c.A5956T	p.R1986X	CTGGTCTGGCAAC	.	123	54	146	0	.	292	A	33324500	T	A	33324500	4	1	41	1	0	0	0	0	0	1	0	0	10233	1588	55	4	251	4	NCOA6	20	33324500	Nonsense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	2300941	33324500	29701020	760	5747											
RBM12	10137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34242510	34242510	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBM12	NM_001198840	exon2	c.G735A	p.P245P	CAAGGGCGGCATG	.	72	26	81	2	.	93	T	34242510	C	T	34242510	2	4	41	1	0	0	0	0	0	0	0	1	13113	755	27	1		1	RBM12	20	34242510	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	918010	34242510	28783010	761	5748											
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	35632146	35632146	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBL1	NM_183404	exon21	c.A2995T	p.R999X	CGCTTCTTGGTGT	.	228	97	213	0	.	419	A	35632146	T	A	35632146	4	1	41	1	0	0	0	0	0	1	0	0	13109	1617	56	4	228	4	RBL1	20	35632146	Nonsense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1389636	35632146	27393374	762	5749											
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44405762	44405762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WFDC3	NM_080614	exon5	c.T445A	p.C149S	TGCAGCATTTATG	.	151	62	190	0	.	90	T	44405762	A	T	44405762	3	4	41	1	0	0	0	0	1	0	0	0	17350	217	8	4	262	4	WFDC3	20	44405762	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8773616	44405762	18619758	763	5750											
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44418554	44418554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WFDC3	NM_080614	exon2	c.T61A	p.W21R	TTATCCAGGATTC	.	66	20	115	0	.	90	T	44418554	A	T	44418554	3	4	41	1	0	0	0	0	1	0	0	0	17350	188	7	4	658	4	WFDC3	20	44418554	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	12792	44418554	18606966	764	5751											
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130946	45130946	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF334	NM_018102	exon5	c.A1032T	p.T344T	CTCCCCTGTGTGT	.	97	40	107	0	.	92	A	45130946	T	A	45130946	2	1	41	1	0	0	0	0	0	0	0	1	17848	1567	55	4		4	ZNF334	20	45130946	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	712392	45130946	17894574	765	5752											
PHACTR3	116154	broad.mit.edu;bcgsc.ca	37	20	58180075	58180075	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHACTR3	NM_080672	exon1	c.C6G	p.A2A	CATGGCCGCGTCG	.	18	6	22	0	.	93	G	58180075	C	G	58180075	2	3	41	1	0	0	0	0	0	0	0	1	11811	639	23	4		4	PHACTR3	20	58180075	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	13049129	58180075	4845445	766	5753											
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	60718284	60718284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA7	NM_002792	exon1	c.G76C	p.V26L	TCTTGACGGCCTC	.	18	14	9	0	.	90	G	60718284	C	G	60718284	3	3	41	1	0	0	0	0	1	0	0	0	12672	536	19	4	698	4	PSMA7	20	60718284	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2538209	60718284	2307236	767	5754											
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	60718296	60718296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA7	NM_002792	exon1	c.G64T	p.A22S	CCTGCGCGTACTC	.	16	12	11	0	.	90	A	60718296	C	A	60718296	3	1	41	1	0	0	0	0	1	0	0	0	12672	768	27	1	710	1	PSMA7	20	60718296	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	12	60718296	2307224	768	5755											
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61947981	61947981	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL20A1	NM_020882	exon21	c.T2601C	p.S867S	GCCCTCTGCCTTC	.	38	16	77	0	.	90	C	61947981	T	C	61947981	2	2	41	1	0	0	0	0	0	0	0	1	3679	1567	55	2		2	COL20A1	20	61947981	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	1229685	61947981	1077539	769	5756											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62366141	62366141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZGPAT	NM_032527	exon5	c.G1016T	p.R339I	GCTCCAGACTCCT	.	94	35	88	0	.	90	T	62366141	G	T	62366141	3	4	41	1	0	0	0	0	1	0	0	0	17671	942	33	3	1030	3	ZGPAT	20	62366141	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	418160	62366141	659379	770	5757											
MYT1	4661	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62844964	62844964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYT1	NM_004535	exon10	c.C1595A	p.P532H	GAGATCCTTCCAA	.	59	33	64	1	.	704	A	62844964	C	A	62844964	3	1	41	1	0	0	0	0	1	0	0	0	10106	681	24	3	1625	3	MYT1	20	62844964	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	478823	62844964	180556	771	5758											
LIPI	149998	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15516949	15516949	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LIPI	NM_198996	exon9	c.A1353G	p.P451P	CCTTTCTGGGTAT	.	229	80	229	1	.	70	C	15516949	T	C	15516949	2	2	41	1	0	0	0	0	0	0	0	1	8825	1567	55	2		2	LIPI	21	15516949	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10		15516949	32612946	772	5759											
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15746215	15746215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HSPA13	NM_006948	exon5	c.A1139C	p.K380T	AGTATTTTCTGAA	.	149	71	153	0	.	226	G	15746215	T	G	15746215	3	3	41	1	0	0	0	0	1	0	0	0	7406	1841	64	5	280	5	HSPA13	21	15746215	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	229266	15746215	32383680	773	5760											
CCT8	10694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30437364	30437364	+	Silent	SNP	A	A	C	rs143385323	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCT8	NM_006585	exon7	c.T687G	p.G229G	TACATCACCTTCG	.	75	38	90	0	A|0.999;G|0.001	90	C	30437364	A	C	30437364	2	2	41	1	0	0	0	0	0	0	0	1	2960	146	6	5		5	CCT8	21	30437364	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	14691149	30437364	17692531	774	5761											
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34715660	34715660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFNAR1	NM_000629	exon4	c.A463T	p.M155L	AGTGTTATGTGGG	.	113	48	98	0	.	91	T	34715660	A	T	34715660	3	4	41	1	0	0	0	0	1	0	0	0	7544	449	16	4	477	4	IFNAR1	21	34715660	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4278296	34715660	13414235	775	5762											
MX2	4600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42762601	42762601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MX2	NM_002463	exon6	c.A842T	p.E281V	CCCATGAGGTGGA	.	81	38	112	2	.	92	T	42762601	A	T	42762601	3	4	41	1	0	0	0	0	1	0	0	0	9998	304	11	4	860	4	MX2	21	42762601	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	8046941	42762601	5367294	776	5763											
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43496123	43496123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UMODL1	NM_173568	exon2	c.T86A	p.L29H	AAGGCCTCTCCCT	.	92	34	131	0	.	93	A	43496123	T	A	43496123	3	1	41	1	0	0	0	0	1	0	0	0	16977	1551	54	4	92	4	UMODL1	21	43496123	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	733522	43496123	4633772	777	5764											
PCBP3	54039	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47320533	47320533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCBP3	NM_001130141	exon4	c.A218G	p.E73G	TGCGTGAGGAGGT	.	222	66	308	1	.	227	G	47320533	A	G	47320533	3	3	41	1	0	0	0	0	1	0	0	0	11502	304	11	2	232	2	PCBP3	21	47320533	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3824410	47320533	809362	778	5765											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	19969151	19969151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARVCF	NM_001670	exon5	c.A479G	p.D160G	GCACCATCTGCAA	.	38	19	44	0	.	91	C	19969151	T	C	19969151	3	2	41	1	0	0	0	0	1	0	0	0	1003	1435	50	2	2469	2	ARVCF	22	19969151	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10		19969151	31335415	779	5766											
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26702074	26702074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEZ6L	NM_021115	exon6	c.T1478C	p.L493P	TGCACCTGCACTT	.	90	32	75	1	.	95	C	26702074	T	C	26702074	3	2	41	1	0	0	0	0	1	0	0	0	14143	1580	55	2	1500	2	SEZ6L	22	26702074	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	6732923	26702074	24602492	780	5767											
HPS4	89781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26860234	26860234	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HPS4	NM_022081	exon11	c.C1362G	p.P454P	GGGAATGGGGGCT	.	52	20	82	0	.	90	C	26860234	G	C	26860234	2	2	41	1	0	0	0	0	0	0	0	1	7341	1335	47	4		4	HPS4	22	26860234	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	158160	26860234	24444332	781	5768											
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31533830	31533830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLA2G3	NM_015715	exon4	c.G932T	p.G311V	GGTGGCCCCTTCC	.	90	37	144	0	.	226	A	31533830	C	A	31533830	3	1	41	1	0	0	0	0	1	0	0	0	12000	623	22	3	613	3	PLA2G3	22	31533830	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4673596	31533830	19770736	782	5769											
SLC5A1	6523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32495287	32495287	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC5A1	NM_000343	exon12	c.C1398A	p.P466P	ACCACCCATTGCG	.	74	30	129	1	.	91	A	32495287	C	A	32495287	2	1	41	1	0	0	0	0	0	0	0	1	14661	581	21	3		3	SLC5A1	22	32495287	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	961457	32495287	18809279	783	5770											
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32586882	32586882	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RFPL2	NM_001098527	exon5	c.G1014A	p.E338E	CAATGGCTCCTCA	.	264	116	250	0	.	91	T	32586882	C	T	32586882	2	4	41	1	0	0	0	0	0	0	0	1	13254	796	28	3		3	RFPL2	22	32586882	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	91595	32586882	18717684	784	5771											
MICALL1	85377	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38321666	38321666	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MICALL1	NM_033386	exon8	c.1083-2A>T	.	TCCTCCAGGACAC	.	111	46	149	1	.	153	T	38321666	A	T	38321666	5	4	41	1	0	0	0	0	0	0	1	0	9573	202	7	4	1111	4	MICALL1	22	38321666	Splice_Site	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5734784	38321666	12982900	785	5772											
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40257983	40257983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENTHD1	NM_152512	exon3	c.G379T	p.V127F	TGATGACTTGCTT	.	194	81	209	0	.	93	A	40257983	C	A	40257983	3	1	41	1	0	0	0	0	1	0	0	0	5137	565	20	3	1464	3	ENTHD1	22	40257983	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	1936317	40257983	11046583	786	5773											
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40708962	40708962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNRC6B	NM_001162501	exon19	c.G4639T	p.A1547S	TACAGTGCCTCTG	.	106	39	110	0	.	22	T	40708962	G	T	40708962	3	4	41	1	0	0	0	0	1	0	0	0	16338	1319	46	3	4834	3	TNRC6B	22	40708962	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	450979	40708962	10595604	787	5774											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45970507	45970507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FBLN1	NM_006486	exon15	c.C1814T	p.T605I	TGCCTACCTTCCG	.	57	22	82	0	.	515	T	45970507	C	T	45970507	3	4	41	1	0	0	0	0	1	0	0	0	5698	507	18	3	2352	3	FBLN1	22	45970507	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	5261545	45970507	5334059	788	5775											
GTSE1	51512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46719148	46719148	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GTSE1	NM_016426	exon8	c.G1494T	p.T498T	GTGCACGTCAGTT	.	57	23	82	0	.	187	T	46719148	G	T	46719148	2	4	41	1	0	0	0	0	0	0	0	1	6885	1132	40	1		1	GTSE1	22	46719148	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	748641	46719148	4585418	789	5776											
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50580530	50580530	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MOV10L1	NM_018995	exon16	c.C2091T	p.D697D	GACGGACCAAGCT	.	79	37	85	0	.	93	T	50580530	C	T	50580530	2	4	41	1	0	0	0	0	0	0	0	1	9719	506	18	3		3	MOV10L1	22	50580530	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3861382	50580530	724036	790	5777											
ACR	49	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51178223	51178223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACR	NM_001097	exon3	c.T383C	p.I128T	AGAAAATCATCAT	.	126	58	156	0	.	90	C	51178223	T	C	51178223	3	2	41	1	0	0	0	0	1	0	0	0	169	1435	50	2	393	2	ACR	22	51178223	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	597693	51178223	126343	791	5778											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	6069058	6069058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NLGN4X	NM_181332	exon2	c.C450A	p.N150K	GTAGATGTTTAAG	.	51	41	74	0	.	195	T	6069058	G	T	6069058	3	4	41	1	0	0	0	0	1	0	0	0	10464	1368	48	3	2020	3	NLGN4X	23	6069058	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10		6069058	149201502	792	5779											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23397834	23397834	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTCHD1	NM_173495	exon2	c.C478T	p.L160L	GAAGAGCTAAAGA	.	242	204	358	0	.	135	T	23397834	C	T	23397834	2	4	41	1	0	0	0	0	0	0	0	1	12732	796	28	3		3	PTCHD1	23	23397834	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	17328776	23397834	131872726	793	5780											
FTHL17	53940	ucsc.edu;bcgsc.ca	37	X	31089830	31089830	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FTHL17	NM_031894	exon1	c.A241T	p.I81F	GGCAGATGTGGCC	.	131	112	145	2	.	130	A	31089830	T	A	31089830	3	1	41	1	0	0	0	0	1	0	0	0	6083	1464	51	4	314	4	FTHL17	23	31089830	Missense_Mutation	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	7691996	31089830	124180730	794	5781											
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34149063	34149063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM47A	NM_203408	exon1	c.T1333A	p.C445S	CCTCACAACGATC	.	131	114	173	2	.	134	T	34149063	A	T	34149063	3	4	41	1	0	0	0	0	1	0	0	0	5569	130	5	4	1046	4	FAM47A	23	34149063	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3059233	34149063	121121497	795	5782											
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49143177	49143177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPP1R3F	NM_033215	exon4	c.A2025G	p.I675M	CCAGATAGAGGTC	.	115	99	134	0	.	229	G	49143177	A	G	49143177	3	3	41	1	0	0	0	0	1	0	0	0	12375	410	15	2	2039	2	PPP1R3F	23	49143177	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	14994114	49143177	106127383	796	5783											
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50125538	50125538	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DGKK	.	.	.	.	GTCCAGAGAAATT	.	81	73	101	0	.	227	G	50125538	A	G	50125538	1	3	41	0	1	0	0	0	0	0	0	0	4472	291	11	2		2	DGKK	23	50125538	RNA	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	982361	50125538	105145022	797	5784											
APEX2	27301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	55033578	55033578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APEX2	NM_014481	exon6	c.A1267T	p.T423S	CTCATGACCCCGA	.	86	62	124	0	.	659	T	55033578	A	T	55033578	3	4	41	1	0	0	0	0	1	0	0	0	770	275	10	4	1289	4	APEX2	23	55033578	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	4908040	55033578	100236982	798	5785											
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69572476	69572476	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF4A	NM_012310	exon14	c.A1458G	p.A486A	GGCTGCAGCCATT	.	152	77	104	0	.	134	G	69572476	A	G	69572476	2	3	41	1	0	0	0	0	0	0	0	1	8303	175	7	2		2	KIF4A	23	69572476	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	14538898	69572476	85698084	799	5786											
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69772028	69772028	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TEX11	NM_001003811	exon29	c.T2513A	p.L838Q	TCTTCCAGGGGAC	.	467	215	326	1	.	178	T	69772028	A	T	69772028	3	4	41	1	0	0	0	0	1	0	0	0	15771	188	7	4	321	4	TEX11	23	69772028	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	199552	69772028	85498532	800	5787											
MAGEE2	139599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75004449	75004449	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEE2	NM_138703	exon1	c.T438C	p.V146V	ATCAATAACTCTC	.	112	49	74	1	.	132	G	75004449	A	G	75004449	2	3	41	1	0	0	0	0	0	0	0	1	9186	349	13	2		2	MAGEE2	23	75004449	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5232421	75004449	80266111	801	5788											
P2RY10	27334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78216943	78216943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	P2RY10	NM_198333	exon2	c.C926A	p.A309D	TTATGGCTTCAGA	.	188	84	125	0	.	542	A	78216943	C	A	78216943	3	1	41	1	0	0	0	0	1	0	0	0	11347	797	28	3	928	3	P2RY10	23	78216943	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	3212494	78216943	77053617	802	5789											
POU3F4	5456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	82764127	82764127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POU3F4	NM_000307	exon1	c.C795A	p.S265R	AGGGAGCCCGACC	.	367	152	226	1	.	131	A	82764127	C	A	82764127	3	1	41	1	0	0	0	0	1	0	0	0	12277	738	26	3	797	3	POU3F4	23	82764127	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	4547184	82764127	72506433	803	5790											
DACH2	117154	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	85906101	85906101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DACH2	NM_053281	exon4	c.A703T	p.N235Y	GCTATGAACACTC	.	295	142	183	1	.	136	T	85906101	A	T	85906101	3	4	41	1	0	0	0	0	1	0	0	0	4221	246	9	4	717	4	DACH2	23	85906101	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3141974	85906101	69364459	804	5791											
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu	37	X	91131828	91131828	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDH11X	NM_001168363	exon2	c.A589T	p.K197X	GGAGACAAGATGC	.	554	238	333	1	.	193	T	91131828	A	T	91131828	4	4	41	1	0	0	0	0	0	1	0	0	11508	131	5	4	595	4	PCDH11X	23	91131828	Nonsense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	5225727	91131828	64138732	805	5792											
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91873264	91873264	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDH11X	NM_032968	exon7	c.T3369A	p.A1123A	AACAGCTGCAGAA	.	245	116	112	0	.	193	A	91873264	T	A	91873264	2	1	41	1	0	0	0	0	0	0	0	1	11508	1594	55	4		4	PCDH11X	23	91873264	Silent	SNP	T	TCGA-CC-A7IH-01A-11D-A33K-10	741436	91873264	63397296	806	5793											
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107464587	107464587	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A6	NM_001847	exon4	c.T165C	p.I55I	AATTCCAATTGGT	.	153	73	89	0	.	199	G	107464587	A	G	107464587	2	3	41	1	0	0	0	0	0	0	0	1	3695	126	5	2		2	COL4A6	23	107464587	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	15591323	107464587	47805973	807	5794											
DCAF12L2	340578	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125298937	125298937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCAF12L2	NM_001013628	exon1	c.G971T	p.G324V	TGAGAGCCCACAG	.	185	85	115	1	.	113	A	125298937	C	A	125298937	3	1	41	1	0	0	0	0	1	0	0	0	4265	739	26	3	424	3	DCAF12L2	23	125298937	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	17834350	125298937	29971623	808	5795											
GPC4	2239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132458433	132458433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPC4	NM_001448	exon3	c.G451T	p.V151L	CCACCACGTAGTA	.	200	91	118	0	.	226	A	132458433	C	A	132458433	3	1	41	1	0	0	0	0	1	0	0	0	6600	536	19	1	1247	1	GPC4	23	132458433	Missense_Mutation	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	7159496	132458433	22812127	809	5796											
PHF6	84295	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133547942	133547942	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHF6	NM_032335	exon7	c.A678G	p.R226R	AGCACGAGGAAAA	.	631	311	342	2	.	131	G	133547942	A	G	133547942	2	3	41	1	0	0	0	0	0	0	0	1	11838	291	11	2		2	PHF6	23	133547942	Silent	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1089509	133547942	21722618	810	5797											
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135488040	135488040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR112	NM_153834	exon23	c.A8844T	p.L2948F	ATTCTTACTTGGC	.	157	26	76	0	.	183	T	135488040	A	T	135488040	3	4	41	1	0	0	0	0	1	0	0	0	6629	388	14	4	8922	4	GPR112	23	135488040	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	1940098	135488040	19782520	811	5798											
MCF2	4168	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138701843	138701843	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MCF2	NM_001171876	exon10	c.T890A	p.L297Q	TTTAATAGAAATT	.	784	347	430	2	.	227	T	138701843	A	T	138701843	3	4	41	1	0	0	0	0	1	0	0	0	9378	420	15	4	2223	4	MCF2	23	138701843	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	3213803	138701843	16568717	812	5799											
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140969387	140969387	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEC3	NM_138702	exon4	c.C714T	p.G238G	TTTTGGCATTTCC	.	141	60	89	0	.	555	T	140969387	C	T	140969387	2	4	41	1	0	0	0	0	0	0	0	1	9182	697	25	3		3	MAGEC3	23	140969387	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	2267544	140969387	14301173	813	5800											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147743516	147743516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AFF2	NM_002025	exon3	c.A268G	p.N90D	CATTCTAATCAGA	.	394	176	248	0	.	135	G	147743516	A	G	147743516	3	3	41	1	0	0	0	0	1	0	0	0	357	362	13	2	278	2	AFF2	23	147743516	Missense_Mutation	SNP	A	TCGA-CC-A7IH-01A-11D-A33K-10	6774129	147743516	7527044	814	5801											
EMD	2010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153607910	153607910	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMD	NM_000117	exon1	c.G66T	p.P22P	CATCCCGCACGGG	.	100	46	77	0	.	130	T	153607910	G	T	153607910	2	4	41	1	0	0	0	0	0	0	0	1	5087	1074	38	1		1	EMD	23	153607910	Silent	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	5864394	153607910	1662650	815	5802											
DNASE1L1	1774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153633398	153633398	+	Silent	SNP	C	C	T	rs150301252	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNASE1L1	NM_006730	exon3	c.G162A	p.V54V	CTGCAGCACCATG	.	224	114	132	1	C|1.000;T|0.000	554	T	153633398	C	T	153633398	2	4	41	1	0	0	0	0	0	0	0	1	4661	697	25	3		3	DNASE1L1	23	153633398	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	25488	153633398	1637162	816	5803											
CTAG2	30848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153880820	153880820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CTAG2	NM_020994	exon2	c.C355A	p.P119T	CCCCTGGTCGGGG	.	178	88	134	0	.	131	T	153880820	G	T	153880820	3	4	41	1	0	0	0	0	1	0	0	0	3991	1261	44	3	420	3	CTAG2	23	153880820	Missense_Mutation	SNP	G	TCGA-CC-A7IH-01A-11D-A33K-10	247422	153880820	1389740	817	5804											
VBP1	7411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154444801	154444801	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VBP1	NM_003372	exon1	c.C42G	p.A14A	AATGGCCACAGGG	.	130	72	69	0	.	226	G	154444801	C	G	154444801	2	3	41	1	0	0	0	0	0	0	0	1	17133	581	21	4		4	VBP1	23	154444801	Silent	SNP	C	TCGA-CC-A7IH-01A-11D-A33K-10	563981	154444801	825759	818	5805											
PRAMEF17	391004	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	13716967	13716967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_001099851	exon2	c.G454T	p.D152Y	TTCATAGACCTCT	.	212	96	209	0	.	.	T	13716967	G	T	13716967	3	4	42	1	0	0	0	0	1	0	0	0	12432	942	33	3	460	3	PRAMEF17	1	13716967	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		13716967	235533654	1	5806											
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22304871	22304871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CELA3B	NM_007352	exon2	c.A53G	p.Y18C	CAGGCTATGGCCC	.	108	42	102	0	.	91	G	22304871	A	G	22304871	3	3	42	1	0	0	0	0	1	0	0	0	3214	449	16	2	59	2	CELA3B	1	22304871	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	8587904	22304871	226945750	2	5807											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27939760	27939760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FGR	NM_001042729	exon12	c.C1351A	p.L451I	TGATGAGCTCAGT	.	127	62	111	0	.	547	T	27939760	G	T	27939760	3	4	42	1	0	0	0	0	1	0	0	0	5874	971	34	3	246	3	FGR	1	27939760	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	5634889	27939760	221310861	3	5808											
NCDN	23154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36025987	36025987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NCDN	NM_001014839	exon4	c.G235T	p.A79S	TTCGATGCTGTCG	.	109	36	129	0	.	155	T	36025987	G	T	36025987	3	4	42	1	0	0	0	0	1	0	0	0	10214	1319	46	3	245	3	NCDN	1	36025987	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	8086227	36025987	213224634	4	5809											
UQCRH	7388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46782226	46782226	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	UQCRH	NM_006004	exon4	c.G246T	p.V82V	CTAGGTGGCCCAC	.	228	118	217	0	.	90	T	46782226	G	T	46782226	2	4	42	1	0	0	0	0	0	0	0	1	17019	1335	47	3		3	UQCRH	1	46782226	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	10756239	46782226	202468395	5	5810											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109810616	109810616	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CELSR2	NM_001408	exon17	c.G6252T	p.L2084L	GCGGCTGCTGGCC	.	32	9	45	0	.	526	T	109810616	G	T	109810616	2	4	42	1	0	0	0	0	0	0	0	1	3222	1306	46	3		3	CELSR2	1	109810616	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	63028390	109810616	139440005	6	5811											
SORT1	6272	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109883462	109883462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SORT1	NM_002959	exon10	c.G1148T	p.G383V	ACAATGCCTCGAT	.	255	82	246	1	.	91	A	109883462	C	A	109883462	3	1	42	1	0	0	0	0	1	0	0	0	14935	739	26	3	1391	3	SORT1	1	109883462	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	72846	109883462	139367159	7	5812											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152280060	152280060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FLG	NM_002016	exon3	c.C7302A	p.S2434R	TCCAGTGCTGGTC	.	156	47	145	0	.	106	T	152280060	G	T	152280060	3	4	42	1	0	0	0	0	1	0	0	0	5922	1310	46	3	4887	3	FLG	1	152280060	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	42396598	152280060	96970561	8	5813											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201021743	201021743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CACNA1S	NM_000069	exon32	c.C3895A	p.Q1299K	TTATTTGGGTCCC	.	113	38	123	0	.	94	T	201021743	G	T	201021743	3	4	42	1	0	0	0	0	1	0	0	0	2547	1357	47	3	1778	3	CACNA1S	1	201021743	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	48741683	201021743	48228878	9	5814											
TATDN3	128387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212965299	212965315	+	Frame_Shift_Del	DEL	CTGCCACCTCTCCGCCC	CTGCCACCTCTCCGCCC	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	CTGCCACCTCTCCGCCC	CTGCCACCTCTCCGCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TATDN3	NM_001146170	exon1	c.36_52del	p.12_18del	CTGTCACTGCCAC	.	141	25	182	0	.	22	-	212965315	CTGCCACCTCTCCGCCC	-	212965299	7	5	42	1	0	1	0	1	0	0	0	0	15590	564	20	0	38	0	TATDN3	1	212965299	Frame_Shift_Del	DEL	CTGCCACCTCTCCGCCC	TCGA-CC-A7II-01A-11D-A33K-10	11943556	212965299	36285322	10	5815											
TLR5	7100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223285710	223285710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TLR5	NM_003268	exon6	c.C664T	p.P222S	TGAATGGGTTCAT	.	129	33	112	0	.	525	A	223285710	G	A	223285710	3	1	42	1	0	0	0	0	1	0	0	0	15951	1232	43	3	1916	3	TLR5	1	223285710	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	10320411	223285710	25964911	11	5816											
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228503597	228503597	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OBSCN	NM_001271223	exon61	c.C15933A	p.G5311G	GGAGGGCGGCGAG	.	51	16	63	1	.	403	A	228503597	C	A	228503597	2	1	42	1	0	0	0	0	0	0	0	1	10812	755	27	1		1	OBSCN	1	228503597	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	5217887	228503597	20747024	12	5817											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228525079	228525079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OBSCN	NM_001271223	exon77	c.G19666A	p.G6556S	GCCCGAGGCGAGG	.	165	55	223	0	.	403	A	228525079	G	A	228525079	3	1	42	1	0	0	0	0	1	0	0	0	10812	1000	35	3	17053	3	OBSCN	1	228525079	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	21482	228525079	20725542	13	5818											
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228560614	228560614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OBSCN	NM_001271223	exon105	c.G25006T	p.A8336S	CTGCTGGCAGAGG	.	58	19	72	1	.	403	T	228560614	G	T	228560614	3	4	42	1	0	0	0	0	1	0	0	0	10812	1203	42	3	23715	3	OBSCN	1	228560614	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	35535	228560614	20690007	14	5819											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237947437	237947437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	RYR2	NM_001035	exon90	c.C12425T	p.A4142V	GAAGCGCCAAACG	.	106	44	155	0	.	158	T	237947437	C	T	237947437	3	4	42	1	0	0	0	0	1	0	0	0	13769	739	26	3	12783	3	RYR2	1	237947437	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	9386823	237947437	11303184	15	5820											
FAM84A	151354	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	14774404	14774404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FAM84A	NM_145175	exon2	c.G301T	p.G101C	GTGAGCGGTGGCC	.	14	7	13	0	.	91	T	14774404	G	T	14774404	3	4	42	1	0	0	0	0	1	0	0	0	5641	1116	39	1	303	1	FAM84A	2	14774404	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		14774404	228424969	16	5821											
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	26699163	26699163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OTOF	NM_194248	exon23	c.G2699T	p.G900V	GCCGAGCCGAAGC	.	27	10	27	0	.	135	A	26699163	C	A	26699163	3	1	42	1	0	0	0	0	1	0	0	0	11303	739	26	3	3575	3	OTOF	2	26699163	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	11924759	26699163	216500210	17	5822											
MAPRE3	22924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27248563	27248563	+	Silent	SNP	C	C	T	rs113977877		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAPRE3	NM_012326	exon5	c.C582T	p.G194G	AAATGGCGGCCAT	.	119	48	151	1	C|0.500;T|0.500	91	T	27248563	C	T	27248563	2	4	42	1	0	0	0	0	0	0	0	1	9296	755	27	1		1	MAPRE3	2	27248563	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	549400	27248563	215950810	18	5823											
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27804122	27804122	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	C2orf16	NM_032266	exon1	c.C4683A	p.P1561P	TAACCCCTCTTGG	.	100	21	79	0	.	67	A	27804122	C	A	27804122	2	1	42	1	0	0	0	0	0	0	0	1	2157	668	24	3		3	C2orf16	2	27804122	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	555559	27804122	215395251	19	5824											
ADD2	119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70933425	70933425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADD2	NM_001185055	exon2	c.C164A	p.A55E	AGGTCCGCCGCCC	.	74	31	104	0	.	93	T	70933425	G	T	70933425	3	4	42	1	0	0	0	0	1	0	0	0	305	1087	38	1	2301	1	ADD2	2	70933425	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	43129303	70933425	172265948	20	5825											
ACOXL	55289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111556210	111556210	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ACOXL	NM_001142807	exon6	c.T369C	p.C123C	GCCGTGTGAAAAT	.	48	17	75	0	.	90	C	111556210	T	C	111556210	2	2	42	1	0	0	0	0	0	0	0	1	161	1702	59	2		2	ACOXL	2	111556210	Silent	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	40622785	111556210	131643163	21	5826											
WDR33	55339	broad.mit.edu;bcgsc.ca	37	2	128495606	128495606	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	WDR33	NM_001006623	exon8	c.T747G	p.R249R	GTAACAACGGCAG	.	71	37	96	2	.	90	C	128495606	A	C	128495606	2	2	42	1	0	0	0	0	0	0	0	1	17284	30	2	5		5	WDR33	2	128495606	Silent	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	16939396	128495606	114703767	22	5827											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148684674	148684674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	ACVR2A,NS,carcinoma,0	ACVR2A	NM_001616	exon11	c.T1373C	p.I458T	AAACCATTGAAGA	.	73	18	121	1	.	831	C	148684674	T	C	148684674	3	2	42	1	0	0	0	0	1	0	0	0	223	1493	52	2	1415	2	ACVR2A	2	148684674	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	20189068	148684674	94514699	23	5828											
EVX2	344191	broad.mit.edu;mdanderson.org	37	2	176944851	176944851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EVX2	NM_001080458	exon3	c.C1415A	p.A472D	AGCGGAGCCTCGT	.	28	7	23	0	.	70	T	176944851	G	T	176944851	3	4	42	1	0	0	0	0	1	0	0	0	5295	971	34	3	17	3	EVX2	2	176944851	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	28260177	176944851	66254522	24	5829											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179701999	179701999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC141	NM_173648	exon23	c.G3947T	p.S1316I	TCAGCACTGATTC	.	81	28	117	0	.	78	A	179701999	C	A	179701999	3	1	42	1	0	0	0	0	1	0	0	0	2775	565	20	3	409	3	CCDC141	2	179701999	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	2757148	179701999	63497374	25	5830											
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	187455211	187455222	+	In_Frame_Del	DEL	TCGGCTTCGCCG	TCGGCTTCGCCG	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	TCGGCTTCGCCG	TCGGCTTCGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ITGAV	NM_001145000	exon1	c.146_157del	p.49_53del	GTTACTTCGGCTT	.	180	36	222	0	.	653	-	187455222	TCGGCTTCGCCG	-	187455211	7	5	42	1	0	1	0	1	0	0	0	0	7888	1783	62	0	148	0	ITGAV	2	187455211	In_Frame_Del	DEL	TCGGCTTCGCCG	TCGA-CC-A7II-01A-11D-A33K-10	7753212	187455211	55744162	26	5831											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189850437	189850437	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	COL3A1	NM_000090	exon4	c.G380C	p.G127A	TTCCAGGACAACC	.	192	74	232	0	.	581	C	189850437	G	C	189850437	3	2	42	1	0	0	0	0	1	0	0	0	3688	1174	41	4	394	4	COL3A1	2	189850437	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	2395226	189850437	53348936	27	5832											
SCG2	7857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	224462635	224462635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SCG2	NM_003469	exon2	c.C1366A	p.P456T	TATATGGATTGGG	.	62	25	74	1	.	69	T	224462635	G	T	224462635	3	4	42	1	0	0	0	0	1	0	0	0	13891	1174	41	3	491	3	SCG2	2	224462635	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	34612198	224462635	18736738	28	5833											
DOCK10	55619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225669789	225669789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DOCK10	NM_014689	exon37	c.C4104A	p.F1368L	GCTGAAGAAGTCG	.	253	95	377	1	.	92	T	225669789	G	T	225669789	3	4	42	1	0	0	0	0	1	0	0	0	4685	933	33	3	2536	3	DOCK10	2	225669789	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	1207154	225669789	17529584	29	5834											
ESPNL	339768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239010624	239010624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ESPNL	NM_194312	exon2	c.C337T	p.R113C	GCCGCCCGTTTTG	.	46	18	59	0	.	69	T	239010624	C	T	239010624	3	4	42	1	0	0	0	0	1	0	0	0	5255	652	23	1	343	1	ESPNL	2	239010624	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	13340835	239010624	4188749	30	5835											
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242202212	242202212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	HDLBP	NM_001243900	exon6	c.G472A	p.D158N	CTTGGTCTTTGGC	.	96	37	130	0	.	290	T	242202212	C	T	242202212	3	4	42	1	0	0	0	0	1	0	0	0	7025	913	32	3	3538	3	HDLBP	2	242202212	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	3191588	242202212	997161	31	5836											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38743417	38743417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SCN10A	NM_006514	exon26	c.G4570T	p.V1524F	TCATGACACATTC	.	97	28	111	0	.	99	A	38743417	C	A	38743417	3	1	42	1	0	0	0	0	1	0	0	0	13912	478	17	3	1308	3	SCN10A	3	38743417	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		38743417	159279013	32	5837											
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42750569	42750569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC13	NM_144719	exon16	c.G2051T	p.G684V	TCCTTTCCCCGCA	.	60	19	82	0	.	91	A	42750569	C	A	42750569	3	1	42	1	0	0	0	0	1	0	0	0	2765	855	30	3	100	3	CCDC13	3	42750569	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	4007152	42750569	155271861	33	5838											
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49201424	49201424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC71	NM_022903	exon2	c.A218G	p.Y73C	GAACTATAGCCAT	.	116	44	164	0	.	91	C	49201424	T	C	49201424	3	2	42	1	0	0	0	0	1	0	0	0	2844	1406	49	2	1189	2	CCDC71	3	49201424	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	6450855	49201424	148821006	34	5839											
BSN	8927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49701930	49701930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	BSN	NM_003458	exon9	c.G11683A	p.V3895M	GAGAGCGTGTTCT	.	30	8	55	0	.	97	A	49701930	G	A	49701930	3	1	42	1	0	0	0	0	1	0	0	0	1530	1145	40	1	11717	1	BSN	3	49701930	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	500506	49701930	148320500	35	5840											
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49744294	49744294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	RNF123	NM_022064	exon26	c.G2459T	p.R820L	TGAGCCGCCGTCT	.	92	25	115	0	.	584	T	49744294	G	T	49744294	3	4	42	1	0	0	0	0	1	0	0	0	13433	1087	38	1	2557	1	RNF123	3	49744294	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	42364	49744294	148278136	36	5841											
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132438610	132438610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NPHP3	NM_153240	exon2	c.A458C	p.Q153P	ATTGCTTGGTATT	.	64	28	107	0	.	91	G	132438610	T	G	132438610	3	3	42	1	0	0	0	0	1	0	0	0	10580	1812	63	5	3638	5	NPHP3	3	132438610	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	82694316	132438610	65583820	37	5842											
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	160134114	160134114	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SMC4	NM_005496	exon9	c.G1348T	p.E450X	GCCCTCGAGAAGG	.	307	119	374	0	.	291	T	160134114	G	T	160134114	4	4	42	1	0	0	0	0	0	1	0	0	14785	1059	37	1	1382	1	SMC4	3	160134114	Nonsense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	27695504	160134114	37888316	38	5843											
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183210427	183210427	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KLHL6	NM_130446	exon6	c.C1419A	p.I473I	TCCCCCGATCACA	.	118	31	160	0	.	93	T	183210427	G	T	183210427	2	4	42	1	0	0	0	0	0	0	0	1	8393	1048	37	1		1	KLHL6	3	183210427	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	23076313	183210427	14812003	39	5844											
GK2	2712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80327763	80327763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GK2	NM_033214	exon1	c.C1592T	p.P531L	CCCAAAGGCAGAC	.	189	45	266	1	.	94	A	80327763	G	A	80327763	3	1	42	1	0	0	0	0	1	0	0	0	6421	1000	35	3	73	3	GK2	4	80327763	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		80327763	110826513	40	5845											
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177041113	177041113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	WDR17	NM_170710	exon5	c.C475A	p.P159T	TCAGGACCAGATA	.	41	11	123	1	.	95	A	177041113	C	A	177041113	3	1	42	1	0	0	0	0	1	0	0	0	17274	507	18	3	489	3	WDR17	4	177041113	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	96713350	177041113	14113163	41	5846											
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143613	143613	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PLEKHG4B	NM_052909	exon3	c.C738A	p.I246I	TAGCATCCCCAGG	.	64	15	74	0	.	228	A	143613	C	A	143613	2	1	42	1	0	0	0	0	0	0	0	1	12072	845	30	3		3	PLEKHG4B	5	143613	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		143613	180771647	42	5847											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1411361	1411361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SLC6A3	NM_001044	exon9	c.C1266A	p.S422R	CACGGCGCTGTCG	.	41	26	54	0	.	157	T	1411361	G	T	1411361	3	4	42	1	0	0	0	0	1	0	0	0	14685	1078	38	1	624	1	SLC6A3	5	1411361	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	1267748	1411361	179503899	43	5848											
MARCH6	10299	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10403615	10403615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MARCH6	NM_005885	exon15	c.G1294T	p.V432F	GTATATGTCTTCT	.	151	37	134	1	.	501	T	10403615	G	T	10403615	3	4	42	1	0	0	0	0	1	0	0	0	9305	1377	48	3	1352	3	MARCH6	5	10403615	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	8992254	10403615	170511645	44	5849											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38438475	38438475	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EGFLAM	NM_001205301	exon17	c.C2382T	p.A794A	TTGTGCCCATGGG	.	177	104	151	0	.	187	T	38438475	C	T	38438475	2	4	42	1	0	0	0	0	0	0	0	1	4966	610	22	3		3	EGFLAM	5	38438475	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	28034860	38438475	142476785	45	5850											
PTGER4	5734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40692406	40692406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PTGER4	NM_000958	exon3	c.C1393A	p.P465T	GCTGGGCCTGCCC	.	111	30	114	0	.	658	A	40692406	C	A	40692406	3	1	42	1	0	0	0	0	1	0	0	0	12745	739	26	3	1399	3	PTGER4	5	40692406	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	2253931	40692406	140222854	46	5851											
MAP3K1	4214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56176951	56176951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAP3K1	NM_005921	exon13	c.A2221G	p.I741V	AATTGTATTCTTG	.	92	41	139	1	.	956	G	56176951	A	G	56176951	3	3	42	1	0	0	0	0	1	0	0	0	9243	449	16	2	2271	2	MAP3K1	5	56176951	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	15484545	56176951	124738309	47	5852											
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82406962	82406962	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	XRCC4	NM_003401	exon3	c.G255C	p.T85T	ATACACGTTTAAT	.	93	20	111	0	.	229	C	82406962	G	C	82406962	2	2	42	1	0	0	0	0	0	0	0	1	17452	1132	40	4		4	XRCC4	5	82406962	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	26230011	82406962	98508298	48	5853											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222692	140222692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PCDHA8	NM_031856	exon1	c.G1786T	p.A596S	GTGCGCGCAGTGG	.	42	21	64	0	.	92	T	140222692	G	T	140222692	3	4	42	1	0	0	0	0	1	0	0	0	11530	1087	38	1	1788	1	PCDHA8	5	140222692	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	57815730	140222692	40692568	49	5854											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154287212	154287212	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GEMIN5	NM_015465	exon16	c.A2334G	p.S778S	TTGGTCTGACACA	.	131	44	172	0	.	228	C	154287212	T	C	154287212	2	2	42	1	0	0	0	0	0	0	0	1	6331	1567	55	2		2	GEMIN5	5	154287212	Silent	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	14064520	154287212	26628048	50	5855											
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177669082	177669082	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	COL23A1	NM_173465	exon27	c.C1542A	p.G514G	CGGCTCGCCCTTC	.	46	8	53	0	.	91	T	177669082	G	T	177669082	2	4	42	1	0	0	0	0	0	0	0	1	3682	1074	38	1		1	COL23A1	5	177669082	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	23381870	177669082	3246178	51	5856											
GNMT	27232	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	42928679	42928679	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GNMT	NM_018960	exon1	c.C174T	p.C58C	CGGCTGCCAGCGG	.	24	10	17	0	.	514	T	42928679	C	T	42928679	2	4	42	1	0	0	0	0	0	0	0	1	6540	747	26	3		3	GNMT	6	42928679	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		42928679	128186388	52	5857											
DLK2	65989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43418725	43418725	+	Missense_Mutation	SNP	T	T	A	rs80187636	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DLK2	NM_023932	exon6	c.A704T	p.D235V	AGGCAGTCGAAGT	.	114	50	102	0	.	68	A	43418725	T	A	43418725	3	1	42	1	0	0	0	0	1	0	0	0	4565	1667	58	4	451	4	DLK2	6	43418725	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	490046	43418725	127696342	53	5858											
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44218826	44218826	+	Silent	SNP	A	A	G	rs2070694	byfrequency	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	HSP90AB1	NM_007355	exon7	c.A999G	p.L333L	ATTGCTATTTATT	.	96	53	100	0	A|0.991;G|0.009	658	G	44218826	A	G	44218826	2	3	42	1	0	0	0	0	0	0	0	1	7402	436	16	2		2	HSP90AB1	6	44218826	Silent	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	800101	44218826	126896241	54	5859											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90577673	90577673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CASP8AP2	NM_001137667	exon8	c.G4664A	p.G1555D	CTTCTGGCCTTAA	.	68	21	84	0	.	24	A	90577673	G	A	90577673	3	1	42	1	0	0	0	0	1	0	0	0	2678	1203	42	3	4690	3	CASP8AP2	6	90577673	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	46358847	90577673	80537394	55	5860											
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	152129176	152129176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ESR1	NM_000125	exon1	c.C129A	p.Y43X	GGTGTACCTGGAC	.	62	25	57	0	.	1042	A	152129176	C	A	152129176	4	1	42	1	0	0	0	0	0	1	0	0	5256	518	18	3	131	3	ESR1	6	152129176	Nonsense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	61551503	152129176	18985891	56	5861											
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159210363	159210363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EZR	NM_003379	exon2	c.T53A	p.F18Y	ATTGCAAACTCCA	.	126	36	140	0	.	70	T	159210363	A	T	159210363	3	4	42	1	0	0	0	0	1	0	0	0	5335	14	1	4	1755	4	EZR	6	159210363	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	7081187	159210363	11904704	57	5862											
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	161507445	161507445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAP3K4	NM_006724	exon8	c.G2407T	p.E803X	CTGAAGGAGCTCT	.	95	34	80	0	.	548	T	161507445	G	T	161507445	4	4	42	1	0	0	0	0	0	1	0	0	9252	1175	41	3	2437	3	MAP3K4	6	161507445	Nonsense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	2297082	161507445	9607622	58	5863											
IGF2BP3	10643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	23509624	23509624	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	IGF2BP3	NM_006547	exon1	c.A106T	p.K36X	CAGTCTTCACCAG	.	80	30	87	0	.	92	A	23509624	T	A	23509624	4	1	42	1	0	0	0	0	0	1	0	0	7575	1792	62	4	1693	4	IGF2BP3	7	23509624	Nonsense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10		23509624	135629039	59	5864											
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38457451	38457451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	AMPH	NM_001635	exon17	c.G1372T	p.A458S	CCTCAGCCCGAGT	.	67	19	74	0	.	95	A	38457451	C	A	38457451	3	1	42	1	0	0	0	0	1	0	0	0	588	739	26	3	735	3	AMPH	7	38457451	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	14947827	38457451	120681212	60	5865											
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81591312	81591312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CACNA2D1	NM_000722	exon36	c.C2864A	p.A955D	AGGGAGGCCGTGA	.	84	27	160	1	.	96	T	81591312	G	T	81591312	3	4	42	1	0	0	0	0	1	0	0	0	2548	1203	42	3	427	3	CACNA2D1	7	81591312	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	43133861	81591312	77547351	61	5866											
NPTX2	4885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98256508	98256508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NPTX2	NM_002523	exon4	c.G920T	p.G307V	GTGACGGCAAGTG	.	64	30	64	0	.	515	T	98256508	G	T	98256508	3	4	42	1	0	0	0	0	1	0	0	0	10603	1203	42	3	934	3	NPTX2	7	98256508	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	16665196	98256508	60882155	62	5867											
AKR1B15	441282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134262493	134262493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	AKR1B15	NM_001080538	exon11	c.C947A	p.T316N	TGGCAACCATACT	.	127	74	117	1	.	23	A	134262493	C	A	134262493	3	1	42	1	0	0	0	0	1	0	0	0	468	507	18	3	981	3	AKR1B15	7	134262493	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	36005985	134262493	24876170	63	5868											
DGKI	9162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137080389	137080389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DGKI	NM_004717	exon33	c.G3036T	p.Q1012H	CAGAAGCTGGCAC	.	142	37	132	0	.	228	A	137080389	C	A	137080389	3	1	42	1	0	0	0	0	1	0	0	0	4471	796	28	3	169	3	DGKI	7	137080389	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	2817896	137080389	22058274	64	5869											
TPK1	27010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	144150676	144150676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TPK1	NM_022445	exon9	c.G694T	p.D232Y	GGTGGTCAGTTTC	.	122	29	119	0	.	188	A	144150676	C	A	144150676	3	1	42	1	0	0	0	0	1	0	0	0	16401	826	29	3	41	3	TPK1	7	144150676	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	7070287	144150676	14987987	65	5870											
GIMAP8	155038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150171330	150171330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GIMAP8	NM_175571	exon4	c.G913T	p.D305Y	GCTCCGGACATCT	.	138	74	105	1	.	95	T	150171330	G	T	150171330	3	4	42	1	0	0	0	0	1	0	0	0	6385	1174	41	3	923	3	GIMAP8	7	150171330	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	6020654	150171330	8967333	66	5871											
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150696315	150696315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NOS3	NM_001160111	exon8	c.G994C	p.A332P	TGGTACGCCCTCC	.	51	32	42	0	.	1011	C	150696315	G	C	150696315	3	2	42	1	0	0	0	0	1	0	0	0	10544	1087	38	4	1024	4	NOS3	7	150696315	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	524985	150696315	8442348	67	5872											
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1514022	1514022	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DLGAP2	NM_004745	exon3	c.G1164T	p.L388L	GCTGCTGAAGTCC	.	73	31	104	1	.	22	T	1514022	G	T	1514022	2	4	42	1	0	0	0	0	0	0	0	1	4560	1277	45	3		3	DLGAP2	8	1514022	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		1514022	144850000	68	5873											
POLR3D	661	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	22105780	22105780	+	Nonsense_Mutation	SNP	G	G	T	rs199704064	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	POLR3D	NM_001722	exon5	c.G475T	p.E159X	ATGCTGGAGAAGG	.	966	46	117	0	G|1.000;A|0.000	90	T	22105780	G	T	22105780	4	4	42	1	0	0	0	0	0	1	0	0	12231	1175	41	3	489	3	POLR3D	8	22105780	Nonsense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	20591758	22105780	124258242	69	5874											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125074249	125074249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FER1L6	NM_001039112	exon25	c.G3304T	p.V1102L	ACACAGGTGGATG	.	268	213	111	0	.	100	T	125074249	G	T	125074249	3	4	42	1	0	0	0	0	1	0	0	0	5815	1261	44	3	3398	3	FER1L6	8	125074249	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	102968469	125074249	21289773	70	5875											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	139737668	139737668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	COL22A1	NM_152888	exon24	c.C2155T	p.P719S	CACCAGGGGGTCC	.	214	10	92	0	.	103	A	139737668	G	A	139737668	3	1	42	1	0	0	0	0	1	0	0	0	3681	1232	43	3	2893	3	COL22A1	8	139737668	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	14663419	139737668	6626354	71	5876											
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140631020	140631020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KCNK9	NM_016601	exon2	c.C606A	p.F202L	GTCCCCGAACCCA	.	283	214	93	0	.	93	T	140631020	G	T	140631020	3	4	42	1	0	0	0	0	1	0	0	0	8072	1049	37	1	522	1	KCNK9	8	140631020	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	893352	140631020	5733002	72	5877											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144891811	144891811	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SCRIB	NM_015356	exon14	c.C1608T	p.P536P	GCCCTCGGGCTCA	.	121	94	51	0	.	228	A	144891811	G	A	144891811	2	1	42	1	0	0	0	0	0	0	0	1	13937	1103	39	1		1	SCRIB	8	144891811	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	4260791	144891811	1472211	73	5878											
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2097384	2097385	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	.	.	.	.	TTCTTAGGGGAAA	.	84	38	50	0	.	.	TC	2097385	GG	TC	2097384	3	4	42	1	0	0	0	0	1	0	0	0	14769	1014	35	3	3069	3	SMARCA2	9	2097384	Missense_Mutation	DNP	GG	TCGA-CC-A7II-01A-11D-A33K-10		2097384	139116047	74	5879											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5923025	5923025	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KIAA2026	NM_001017969	exon8	c.T2971C	p.L991L	AATCCAATGAGGC	.	167	61	146	0	.	92	G	5923025	A	G	5923025	2	3	42	1	0	0	0	0	0	0	0	1	8270	98	4	2		2	KIAA2026	9	5923025	Silent	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	3825641	5923025	135290406	75	5880											
VCP	7415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35068346	35068346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	VCP	NM_007126	exon2	c.G31A	p.D11N	ATAGGTCATCACC	.	93	34	57	0	.	228	T	35068346	C	T	35068346	3	4	42	1	0	0	0	0	1	0	0	0	17137	826	29	3	2453	3	VCP	9	35068346	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	29145321	35068346	106145085	76	5881											
KIAA1958	158405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115421771	115421771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KIAA1958	NM_133465	exon4	c.G1573A	p.A525T	TCGGGCGCGCGTT	.	159	69	117	0	.	91	A	115421771	G	A	115421771	3	1	42	1	0	0	0	0	1	0	0	0	8264	1087	38	1	1583	1	KIAA1958	9	115421771	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	80353425	115421771	25791660	77	5882											
MRPS2	51116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138392921	138392921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MRPS2	NM_016034	exon2	c.C121T	p.L41F	AGGACGCTTGGAA	.	89	29	68	0	.	90	T	138392921	C	T	138392921	3	4	42	1	0	0	0	0	1	0	0	0	9831	797	28	3	127	3	MRPS2	9	138392921	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	22971150	138392921	2820510	78	5883											
PTGDS	5730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139873558	139873558	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PTGDS	NM_000954	exon2	c.C228A	p.G76G	TGGTGGCCTCAAC	.	79	28	67	0	.	91	A	139873558	C	A	139873558	2	1	42	1	0	0	0	0	0	0	0	1	12742	726	26	3		3	PTGDS	9	139873558	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	1480637	139873558	1339873	79	5884											
ITIH5	80760	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	7679202	7679202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ITIH5	NM_001001851	exon5	c.G641T	p.G214V	CCGCGCCCACTGC	.	37	15	51	1	.	92	A	7679202	C	A	7679202	3	1	42	1	0	0	0	0	1	0	0	0	7907	623	22	3	2364	3	ITIH5	10	7679202	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		7679202	127855545	80	5885											
C10orf113	387638	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21414907	21414907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	C10orf113	NM_001010896	exon2	c.G313A	p.A105T	GAGCTGCCTGGAT	.	93	32	110	1	.	93	T	21414907	C	T	21414907	3	4	42	1	0	0	0	0	1	0	0	0	1584	739	26	3	158	3	C10orf113	10	21414907	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	13735705	21414907	114119840	81	5886											
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49450281	49450281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FRMPD2	NM_001018071	exon5	c.G490A	p.E164K	ACACTTCTTTCTC	.	112	40	178	0	.	153	T	49450281	C	T	49450281	3	4	42	1	0	0	0	0	1	0	0	0	6058	922	32	3	3539	3	FRMPD2	10	49450281	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	28035374	49450281	86084466	82	5887											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70405127	70405127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TET1	NM_030625	exon4	c.A2641G	p.M881V	TCGTTAATGAAAG	.	62	24	71	0	.	663	G	70405127	A	G	70405127	3	3	42	1	0	0	0	0	1	0	0	0	15766	101	4	2	2651	2	TET1	10	70405127	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	20954846	70405127	65129620	83	5888											
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	73767615	73767615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CHST3	NM_004273	exon3	c.C826A	p.R276S	GCGGTGCGCATCC	.	25	10	19	0	.	90	A	73767615	C	A	73767615	3	1	42	1	0	0	0	0	1	0	0	0	3405	768	27	1	832	1	CHST3	10	73767615	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	3362488	73767615	61767132	84	5889											
SLC16A12	387700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91196032	91196032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SLC16A12	NM_213606	exon7	c.G1073T	p.G358V	TCCATTCCCACGG	.	80	37	122	0	.	69	A	91196032	C	A	91196032	3	1	42	1	0	0	0	0	1	0	0	0	14405	855	30	3	485	3	SLC16A12	10	91196032	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	17428417	91196032	44338715	85	5890											
NEURL	9148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	105350084	105350084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NEURL	NM_004210	exon6	c.C1680A	p.C560X	CATCTGCCGCCGC	.	63	17	77	0	.	226	A	105350084	C	A	105350084	4	1	42	1	0	0	0	0	0	1	0	0	10345	747	26	3	1702	3	NEURL	10	105350084	Nonsense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	14154052	105350084	30184663	86	5891											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108431023	108431023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SORCS1	NM_001206572	exon16	c.T2161C	p.C721R	AGACACAGGGTTC	.	83	26	129	0	.	153	G	108431023	A	G	108431023	3	3	42	1	0	0	0	0	1	0	0	0	14930	188	7	2	1623	2	SORCS1	10	108431023	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	3080939	108431023	27103724	87	5892											
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126715003	126715003	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CTBP2	NM_022802	exon1	c.C1326T	p.P442P	AGGGGTGGGAGAG	.	99	44	117	0	.	90	A	126715003	G	A	126715003	2	1	42	1	0	0	0	0	0	0	0	1	3998	1335	47	3		3	CTBP2	10	126715003	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	18283980	126715003	8819744	88	5893											
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945191	4945191	+	Missense_Mutation	SNP	C	C	A	rs148836962	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OR51G1	NM_001005237	exon1	c.G379T	p.A127S	AGACGGCCACGTA	.	104	26	103	0	C|0.999;T|0.001	70	A	4945191	C	A	4945191	3	1	42	1	0	0	0	0	1	0	0	0	11098	739	26	3	588	3	OR51G1	11	4945191	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		4945191	130061325	89	5894											
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18743087	18743087	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	IGSF22	NM_173588	exon4	c.C373T	p.L125L	CCTTCAGCACGTG	.	101	30	83	0	.	140	A	18743087	G	A	18743087	2	1	42	1	0	0	0	0	0	0	0	1	7600	962	34	3		3	IGSF22	11	18743087	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	13797896	18743087	116263429	90	5895											
FSHB	2488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30255242	30255242	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FSHB	NM_000510	exon3	c.A285T	p.P95P	ATACCCAGTGGCC	.	152	32	117	0	.	93	T	30255242	A	T	30255242	2	4	42	1	0	0	0	0	0	0	0	1	6072	175	7	4		4	FSHB	11	30255242	Silent	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	11512155	30255242	104751274	91	5896											
PACSIN3	29763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47201773	47201773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PACSIN3	NM_016223	exon6	c.G567T	p.Q189H	CCGTTCCTGCAGT	.	30	13	23	0	.	68	A	47201773	C	A	47201773	3	1	42	1	0	0	0	0	1	0	0	0	11376	680	24	3	731	3	PACSIN3	11	47201773	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	16946531	47201773	87804743	92	5897											
ZFP91	80829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58384203	58384203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZFP91	NM_053023	exon10	c.A1117G	p.I373V	GATTATATCTGTG	.	102	21	81	0	.	91	G	58384203	A	G	58384203	3	3	42	1	0	0	0	0	1	0	0	0	17652	449	16	2	1155	2	ZFP91	11	58384203	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	11182430	58384203	76622313	93	5898											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	58980026	58980026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MPEG1	NM_001039396	exon1	c.G313A	p.A105T	AATTTGCCCAGGA	.	83	7	84	0	.	70	T	58980026	C	T	58980026	3	4	42	1	0	0	0	0	1	0	0	0	9723	739	26	3	1841	3	MPEG1	11	58980026	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	595823	58980026	76026490	94	5899											
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65394885	65394885	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PCNXL3	NM_032223	exon22	c.G3534A	p.A1178A	CCGGGCGCTGCTG	.	29	7	21	0	.	46	A	65394885	G	A	65394885	2	1	42	1	0	0	0	0	0	0	0	1	11593	1074	38	1		1	PCNXL3	11	65394885	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	6414859	65394885	69611631	95	5900											
KRTAP5-8	57830	ucsc.edu;mdanderson.org	37	11	71249152	71249152	+	Silent	SNP	C	C	T	rs112809261	byfrequency	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KRTAP5-8	NM_021046	exon1	c.C51T	p.C17C	GGGCTGCGGCTCT	.	75	37	44	1	C|0.896;T|0.104	44	T	71249152	C	T	71249152	2	4	42	1	0	0	0	0	0	0	0	1	8567	776	27	1		1	KRTAP5-8	11	71249152	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	5854267	71249152	63757364	96	5901											
CCDC81	60494	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86108768	86108768	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC81	NM_001156474	exon6	c.A741G	p.K247K	AGACAAAGAAGAA	.	50	25	57	1	.	91	G	86108768	A	G	86108768	2	3	42	1	0	0	0	0	0	0	0	1	2855	69	3	2		2	CCDC81	11	86108768	Silent	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	14859616	86108768	48897748	97	5902											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120996428	120996428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TECTA	NM_005422	exon7	c.G1621A	p.V541M	ACTGTCGTGGACC	.	77	11	88	0	.	225	A	120996428	G	A	120996428	3	1	42	1	0	0	0	0	1	0	0	0	15744	1145	40	1	1647	1	TECTA	11	120996428	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	34887660	120996428	14010088	98	5903											
OR4D5	219875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123811018	123811018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OR4D5	NM_001001965	exon1	c.G695T	p.G232V	GGGAGGGCCGCAG	.	143	35	145	0	.	69	T	123811018	G	T	123811018	3	4	42	1	0	0	0	0	1	0	0	0	11057	1203	42	3	697	3	OR4D5	11	123811018	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	2814590	123811018	11195498	99	5904											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40714888	40714889	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	LRRK2	NM_198578	exon35	c.5068_5069insT	p.I1690fs	TCTGAAATTATCA	.	74	33	108	0	.	533	T	40714889	-	T	40714888	7	5	42	1	0	1	1	0	0	0	0	0	9033	101	4	0	5206	0	LRRK2	12	40714888	Frame_Shift_Ins	INS	-	TCGA-CC-A7II-01A-11D-A33K-10		40714888	93137007	100	5905											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41966302	41966302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PDZRN4	NM_001164595	exon10	c.C1721A	p.A574D	ATGCAGCCGAGGA	.	161	81	200	1	.	296	A	41966302	C	A	41966302	3	1	42	1	0	0	0	0	1	0	0	0	11710	739	26	3	1832	3	PDZRN4	12	41966302	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	1251414	41966302	91885593	101	5906											
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53170525	53170525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KRT76	NM_015848	exon1	c.G551T	p.R184L	TGTTCCCGCTCCT	.	116	38	136	0	.	154	A	53170525	C	A	53170525	3	1	42	1	0	0	0	0	1	0	0	0	8489	652	23	1	1401	1	KRT76	12	53170525	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	11204223	53170525	80681370	102	5907											
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53207647	53207647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KRT4	NM_002272	exon1	c.G196A	p.A66T	ACCCAGCCACACT	.	70	38	93	0	.	96	T	53207647	C	T	53207647	3	4	42	1	0	0	0	0	1	0	0	0	8477	739	26	3	1402	3	KRT4	12	53207647	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	37122	53207647	80644248	103	5908											
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58002913	58002913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DTX3	NM_178502	exon7	c.C1022T	p.A341V	TGAGAGCGAAGGG	.	87	38	94	0	.	1083	T	58002913	C	T	58002913	3	4	42	1	0	0	0	0	1	0	0	0	4795	768	27	1	1036	1	DTX3	12	58002913	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	4795266	58002913	75848982	104	5909											
SYT1	6857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	79689884	79689884	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	SYT1,NS,NS,0	SYT1	NM_001135805	exon8	c.C510T	p.P170P	ACTGCCCGCCTTG	.	71	28	107	1	.	655	T	79689884	C	T	79689884	2	4	42	1	0	0	0	0	0	0	0	1	15462	639	23	1		1	SYT1	12	79689884	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	21686971	79689884	54162011	105	5910											
DCN	1634	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	91558395	91558395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DCN	NM_001920	exon3	c.T311C	p.L104P	TTCTTCAGGTTCT	.	94	17	93	1	.	555	G	91558395	A	G	91558395	3	3	42	1	0	0	0	0	1	0	0	0	4297	188	7	2	792	2	DCN	12	91558395	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	11868511	91558395	42293500	106	5911											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104077060	104077060	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	STAB2	NM_017564	exon26	c.C2883A	p.T961T	ACAAACCGGGAAA	.	183	59	141	0	.	104	A	104077060	C	A	104077060	2	1	42	1	0	0	0	0	0	0	0	1	15237	639	23	1		1	STAB2	12	104077060	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	12518665	104077060	29774835	107	5912											
SSH1	54434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109192797	109192797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SSH1	NM_001161331	exon12	c.A1361G	p.Y454C	CCTTCATACTCAG	.	60	18	55	0	.	94	C	109192797	T	C	109192797	3	2	42	1	0	0	0	0	1	0	0	0	15183	1406	49	2	2019	2	SSH1	12	109192797	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	5115737	109192797	24659098	108	5913											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132445446	132445446	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EP400	NM_015409	exon2	c.G282T	p.L94L	CCCACTGCCGCTC	.	245	126	304	1	.	520	T	132445446	G	T	132445446	2	4	42	1	0	0	0	0	0	0	0	1	5149	1306	46	3		3	EP400	12	132445446	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	23252649	132445446	1406449	109	5914											
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25416232	25416232	+	Missense_Mutation	SNP	C	C	T	rs140457030		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	RNF17	NM_001184993	exon19	c.C2536T	p.P846S	GGTGCTCCTGAAA	.	63	20	78	0	C|1.000;T|0.000	228	T	25416232	C	T	25416232	3	4	42	1	0	0	0	0	1	0	0	0	13461	855	30	3	2610	3	RNF17	13	25416232	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		25416232	89753646	110	5915											
PAN3	255967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28794511	28794511	+	Silent	SNP	G	G	A	rs45530141	byfrequency	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PAN3	NM_175854	exon6	c.G996A	p.A332A	ATTAGCGCCAGGT	.	67	28	77	0	G|0.988;A|0.012	69	A	28794511	G	A	28794511	2	1	42	1	0	0	0	0	0	0	0	1	11415	1074	38	1		1	PAN3	13	28794511	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	3378279	28794511	86375367	111	5916											
ADPRHL1	113622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	114107605	114107632	+	Frame_Shift_Del	DEL	GCGAGAGTACGAGGTGGTCCAGGCCCCC	GCGAGAGTACGAGGTGGTCCAGGCCCCC	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	GCGAGAGTACGAGGTGGTCCAGGCCCCC	GCGAGAGTACGAGGTGGTCCAGGCCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADPRHL1	NM_138430	exon1	c.121_148del	p.41_50del	CTCCTGGCGAGAG	.	96	9	107	0	.	90	-	114107632	GCGAGAGTACGAGGTGGTCCAGGCCCCC	-	114107605	7	5	42	1	0	1	0	1	0	0	0	0	332	1203	42	0	944	0	ADPRHL1	13	114107605	Frame_Shift_Del	DEL	GCGAGAGTACGAGGTGGTCCAGGCCCCC	TCGA-CC-A7II-01A-11D-A33K-10	85313094	114107605	1062273	112	5917											
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30100159	30100159	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PRKD1	NM_002742	exon10	c.C1461T	p.A487A	AGGATTGGCCCCA	.	130	43	188	0	.	1534	A	30100159	G	A	30100159	2	1	42	1	0	0	0	0	0	0	0	1	12518	1335	47	3		3	PRKD1	14	30100159	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		30100159	77249381	113	5918											
ESR2	2100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64727461	64727461	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ESR2	NM_001214902	exon4	c.C658A	p.R220R	CTCTCCGGGAGCC	.	39	7	45	0	.	611	T	64727461	G	T	64727461	2	4	42	1	0	0	0	0	0	0	0	1	5257	1115	39	1		1	ESR2	14	64727461	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	34627302	64727461	42622079	114	5919											
ZBTB25	7597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64954580	64954580	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZBTB25	NM_006977	exon3	c.G369T	p.V123V	GGACTGCACAGTC	.	168	77	194	1	.	92	A	64954580	C	A	64954580	2	1	42	1	0	0	0	0	0	0	0	1	17529	697	25	3		3	ZBTB25	14	64954580	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	227119	64954580	42394960	115	5920											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105413999	105413999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	AHNAK2	NM_138420	exon7	c.G7789T	p.G2597C	TGGGGCCTTTCAG	.	183	76	198	0	.	47	A	105413999	C	A	105413999	3	1	42	1	0	0	0	0	1	0	0	0	415	681	24	3	9602	3	AHNAK2	14	105413999	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	40459419	105413999	1935541	116	5921											
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	27128577	27128577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GABRA5	NM_001165037	exon6	c.C370A	p.L124I	AACCTCCTTGCCA	.	89	40	119	0	.	91	A	27128577	C	A	27128577	3	1	42	1	0	0	0	0	1	0	0	0	6164	681	24	3	384	3	GABRA5	15	27128577	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		27128577	75402815	117	5922											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45437120	45437120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DUOX1	NM_017434	exon19	c.C2164T	p.R722W	GAAGAGCGGCAGG	.	59	25	84	0	.	142	T	45437120	C	T	45437120	3	4	42	1	0	0	0	0	1	0	0	0	4800	759	27	1	2230	1	DUOX1	15	45437120	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	18308543	45437120	57094272	118	5923											
TPM1	7168	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63335126	63335126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TPM1	NM_001018007	exon1	c.A98G	p.E33G	CGGCGGAAGACAG	.	165	30	151	1	.	90	G	63335126	A	G	63335126	3	3	42	1	0	0	0	0	1	0	0	0	16402	246	9	2	100	2	TPM1	15	63335126	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	17898006	63335126	39196266	119	5924											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65208032	65208032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ANKDD1A	NM_182703	exon2	c.G71A	p.R24H	CCGCCCGCCAGAA	.	43	13	57	0	.	69	A	65208032	G	A	65208032	3	1	42	1	0	0	0	0	1	0	0	0	624	1087	38	1	77	1	ANKDD1A	15	65208032	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	1872906	65208032	37323360	120	5925											
LOXL1	4016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74235272	74235272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	LOXL1	NM_005576	exon2	c.C1180T	p.R394C	TCCCTGCGCTGTG	.	91	29	136	0	.	226	T	74235272	C	T	74235272	3	4	42	1	0	0	0	0	1	0	0	0	8899	768	27	1	1186	1	LOXL1	15	74235272	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	9027240	74235272	28296120	121	5926											
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74467261	74467261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ISLR	NM_201526	exon2	c.A62G	p.E21G	GCCCTGAGCCCTG	.	41	10	57	0	.	155	G	74467261	A	G	74467261	3	3	42	1	0	0	0	0	1	0	0	0	7858	304	11	2	64	2	ISLR	15	74467261	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	231989	74467261	28064131	122	5927											
ARID3B	10620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74836781	74836781	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ARID3B	NM_006465	exon2	c.C504T	p.V168V	TTCTGTCTCCACA	.	77	27	104	0	.	90	T	74836781	C	T	74836781	2	4	42	1	0	0	0	0	0	0	0	1	917	900	32	3		3	ARID3B	15	74836781	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	369520	74836781	27694611	123	5928											
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85681082	85681082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PDE8A	NM_002605	exon22	c.G2438T	p.W813L	AATACTGGAAAGG	.	103	36	146	0	.	94	T	85681082	G	T	85681082	3	4	42	1	0	0	0	0	1	0	0	0	11653	1357	47	3	2524	3	PDE8A	15	85681082	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	10844301	85681082	16850310	124	5929											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	87097615	87097615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_152336	exon20	c.G2703A	p.K901K	TGATAAGCTAGCA	.	61	23	72	0	.	.	A	87097615	G	A	87097615	2	1	42	1	0	0	0	0	0	0	0	1	375	962	34	3		3	AGBL1	15	87097615	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	1416533	87097615	15433777	125	5930											
SSTR5	6755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1129560	1129560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SSTR5	NM_001172560	exon2	c.C692A	p.A231E	GGGCGGCGGGCGT	.	63	46	70	0	.	522	A	1129560	C	A	1129560	3	1	42	1	0	0	0	0	1	0	0	0	15200	768	27	1	694	1	SSTR5	16	1129560	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		1129560	89225193	126	5931											
ALG1	56052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	5121883	5121883	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ALG1	NM_019109	exon1	c.G33A	p.L11L	GGCGCTGTGTCTG	.	18	14	29	0	.	92	A	5121883	G	A	5121883	2	1	42	1	0	0	0	0	0	0	0	1	510	1364	48	3		3	ALG1	16	5121883	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	3992323	5121883	85232870	127	5932											
ARHGAP17	55114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24955152	24955152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ARHGAP17	NM_001006634	exon15	c.G1273A	p.V425I	CATGGACGGATGT	.	121	31	73	1	.	227	T	24955152	C	T	24955152	3	4	42	1	0	0	0	0	1	0	0	0	867	536	19	1	1396	1	ARHGAP17	16	24955152	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	19833269	24955152	65399601	128	5933											
GSG1L	146395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27840186	27840186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GSG1L	NM_001109763	exon5	c.C754T	p.R252C	CCTTGCGCTTGTG	.	145	41	159	0	.	91	A	27840186	G	A	27840186	3	1	42	1	0	0	0	0	1	0	0	0	6821	1087	38	1	253	1	GSG1L	16	27840186	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	2885034	27840186	62514567	129	5934											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31405619	31405619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ITGAD	NM_005353	exon2	c.G94T	p.A32S	GAGGATGCAGGCG	.	104	15	132	0	.	226	T	31405619	G	T	31405619	3	4	42	1	0	0	0	0	1	0	0	0	7884	1319	46	3	100	3	ITGAD	16	31405619	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	3565433	31405619	58949134	130	5935											
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48119516	48119516	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ABCC12	NM_033226	exon27	c.C3816A	p.L1272L	ATTACGGAGAAGA	.	144	43	191	0	.	93	T	48119516	G	T	48119516	2	4	42	1	0	0	0	0	0	0	0	1	52	1161	41	3		3	ABCC12	16	48119516	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	16713897	48119516	42235237	131	5936											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76592443	76592443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CNTNAP4	NM_138994	exon23	c.A3571G	p.I1191V	GTTCGCATTTATC	.	176	52	172	0	.	70	G	76592443	A	G	76592443	3	3	42	1	0	0	0	0	1	0	0	0	3649	217	8	2	3897	2	CNTNAP4	16	76592443	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	28472927	76592443	13762310	132	5937											
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77355100	77355100	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADAMTS18	NM_199355	exon16	c.2164-1G>A	.	CACTAGCTGTGAC	.	111	34	102	0	.	1036	T	77355100	C	T	77355100	5	4	42	1	0	0	0	0	0	0	1	0	263	811	28	3	1538	3	ADAMTS18	16	77355100	Splice_Site	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	762657	77355100	12999653	133	5938											
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77401346	77401346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADAMTS18	NM_199355	exon4	c.G770A	p.R257H	TTCTTGCGTCGTC	.	76	32	91	0	.	1036	T	77401346	C	T	77401346	3	4	42	1	0	0	0	0	1	0	0	0	263	768	27	1	2975	1	ADAMTS18	16	77401346	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	46246	77401346	12953407	134	5939											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	50	22	87	0	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	42	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		7577534	73617676	135	5940											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721980	7721980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DNAH2	NM_020877	exon69	c.T10556C	p.L3519P	AGCTGCTGGGCAT	.	24	13	47	0	.	102	C	7721980	T	C	7721980	3	2	42	1	0	0	0	0	1	0	0	0	4602	1580	55	2	10830	2	DNAH2	17	7721980	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	144446	7721980	73473230	136	5941											
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10534941	10534941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MYH3	NM_002470	exon36	c.A5273G	p.K1758R	ATGGCCTTCTTGG	.	48	25	122	0	.	95	C	10534941	T	C	10534941	3	2	42	1	0	0	0	0	1	0	0	0	10036	1609	56	2	573	2	MYH3	17	10534941	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	2812961	10534941	70660269	137	5942											
PLCD3	113026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43196348	43196348	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PLCD3	.	.	.	.	CAGCAGCCGCCGC	.	36	15	39	0	.	703	A	43196348	C	A	43196348	2	1	42	1	0	0	0	0	0	0	0	1	12032	726	26	3		3	PLCD3	17	43196348	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	32661407	43196348	37998862	138	5943											
TBX21	30009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45820045	45820045	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TBX21	NM_013351	exon2	c.G561A	p.V187V	GTTTGTGGACGTG	.	56	7	93	0	.	90	A	45820045	G	A	45820045	2	1	42	1	0	0	0	0	0	0	0	1	15654	1335	47	3		3	TBX21	17	45820045	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	2623697	45820045	35375165	139	5944											
ANKFN1	162282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54559743	54559743	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ANKFN1	NM_153228	exon17	c.G2127A	p.Q709Q	CACACAGGAGGTG	.	133	47	195	2	.	136	A	54559743	G	A	54559743	2	1	42	1	0	0	0	0	0	0	0	1	625	991	35	3		3	ANKFN1	17	54559743	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	8739698	54559743	26635467	140	5945											
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560529	59560529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TBX4	NM_018488	exon8	c.C1290A	p.S430R	CTATAGCGTGCAG	.	76	27	106	2	.	227	A	59560529	C	A	59560529	3	1	42	1	0	0	0	0	1	0	0	0	15657	767	27	1	1320	1	TBX4	17	59560529	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	5000786	59560529	21634681	141	5946											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74014602	74014602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EVPL	NM_001988	exon12	c.G1364T	p.G455V	GTCTCCCCGCCAG	.	104	32	108	0	.	93	A	74014602	C	A	74014602	3	1	42	1	0	0	0	0	1	0	0	0	5292	623	22	3	4781	3	EVPL	17	74014602	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	14454073	74014602	7180608	142	5947											
DUS1L	64118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80019565	80019565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DUS1L	NM_022156	exon7	c.G626A	p.G209E	ATGTTCCCGTTAG	.	50	18	81	0	.	91	T	80019565	C	T	80019565	3	4	42	1	0	0	0	0	1	0	0	0	4805	623	22	3	827	3	DUS1L	17	80019565	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	6004963	80019565	1175645	143	5948											
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59217241	59217241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CDH20	NM_031891	exon10	c.C1679A	p.S560Y	GGAGGTCTGGTTT	.	117	48	95	0	.	155	A	59217241	C	A	59217241	3	1	42	1	0	0	0	0	1	0	0	0	3106	913	32	3	1717	3	CDH20	18	59217241	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		59217241	18860007	144	5949											
SOCS6	9306	broad.mit.edu;ucsc.edu	37	18	67992706	67992706	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SOCS6	NM_004232	exon2	c.C802T	p.Q268X	GAGAGTCAGGTAG	.	160	91	173	1	.	721	T	67992706	C	T	67992706	4	4	42	1	0	0	0	0	0	1	0	0	14918	827	29	3	804	3	SOCS6	18	67992706	Nonsense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	8775465	67992706	10084542	145	5950											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8619381	8619395	+	In_Frame_Del	DEL	CTCACAGTCGATAAG	CTCACAGTCGATAAG	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	CTCACAGTCGATAAG	CTCACAGTCGATAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MYO1F	NM_012335	exon4	c.292_306del	p.98_102del	CTGGTTCTCACAG	.	46	14	55	0	.	93	-	8619395	CTCACAGTCGATAAG	-	8619381	7	5	42	1	0	1	0	1	0	0	0	0	10073	912	32	0	3090	0	MYO1F	19	8619381	In_Frame_Del	DEL	CTCACAGTCGATAAG	TCGA-CC-A7II-01A-11D-A33K-10		8619381	50509602	146	5951											
FAM129C	199786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17657556	17657556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FAM129C	NM_001098524	exon14	c.G1709T	p.G570V	CTGAGGGCATCTA	.	42	12	42	0	.	90	T	17657556	G	T	17657556	3	4	42	1	0	0	0	0	1	0	0	0	5438	1203	42	3	1763	3	FAM129C	19	17657556	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	9038175	17657556	41471427	147	5952											
ANKRD27	84079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33096767	33096767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ANKRD27	NM_032139	exon24	c.C2467T	p.H823Y	GCTCGTGATGGCC	.	454	292	166	0	.	95	A	33096767	G	A	33096767	3	1	42	1	0	0	0	0	1	0	0	0	655	1290	45	3	709	3	ANKRD27	19	33096767	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	15439211	33096767	26032216	148	5953											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36222992	36222992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MLL4	NM_014727	exon27	c.G5621T	p.R1874L	CATCCCGGAGGCC	.	218	50	71	0	.	697	T	36222992	G	T	36222992	3	4	42	1	0	0	0	0	1	0	0	0	9623	1116	39	1	5727	1	MLL4	19	36222992	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	3126225	36222992	22905991	149	5954											
ZNF829	374899	hgsc.bcm.edu;broad.mit.edu	37	19	37383281	37383281	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF829	NM_001171979	exon6	c.655delA	p.I219fs	GCTGAATAAAAGT	.	97	15	39	0	.	90	-	37383281	T	-	37383281	7	5	42	1	0	1	0	1	0	0	0	0	18179	1406	49	0	890	0	ZNF829	19	37383281	Frame_Shift_Del	DEL	T	TCGA-CC-A7II-01A-11D-A33K-10	1160289	37383281	21745702	150	5955											
MAP4K1	11184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39105049	39105049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAP4K1	NM_007181	exon5	c.T350C	p.V117A	CGGCAGACATAGC	.	206	23	63	0	.	980	G	39105049	A	G	39105049	3	3	42	1	0	0	0	0	1	0	0	0	9259	275	10	2	2325	2	MAP4K1	19	39105049	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	1721768	39105049	20023934	151	5956											
CCDC97	90324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41822393	41822393	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC97	NM_052848	exon2	c.C151T	p.L51L	GTGGCCCTGGACA	.	100	70	142	1	.	90	T	41822393	C	T	41822393	2	4	42	1	0	0	0	0	0	0	0	1	2875	680	24	3		3	CCDC97	19	41822393	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	2717344	41822393	17306590	152	5957											
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42492257	42492257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ATP1A3	NM_001256214	exon4	c.C227A	p.A76D	TCCCGGGCCAGGA	.	63	49	96	0	.	92	T	42492257	G	T	42492257	3	4	42	1	0	0	0	0	1	0	0	0	1130	1203	42	3	2933	3	ATP1A3	19	42492257	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	669864	42492257	16636726	153	5958											
HIF3A	64344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46825090	46825090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	HIF3A	NM_152795	exon10	c.C1202A	p.A401D	AGGCTGCCCTGGC	.	123	68	91	0	.	228	A	46825090	C	A	46825090	3	1	42	1	0	0	0	0	1	0	0	0	7105	739	26	3	1264	3	HIF3A	19	46825090	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	4332833	46825090	12303893	154	5959											
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47424838	47424838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_004491	exon1	c.A2906T	p.N969I	TGTTTAACTCCCC	.	130	68	111	0	.	.	T	47424838	A	T	47424838	3	4	42	1	0	0	0	0	1	0	0	0	6795	43	2	4	2908	4	ARHGAP35	19	47424838	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	599748	47424838	11704145	155	5960											
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49104612	49104613	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	.	.	.	p.W397F	GGAGCCCCAGGAT	.	175	38	146	0	.	.	AA	49104613	CC	AA	49104612	3	1	42	1	0	0	0	0	1	0	0	0	5637	624	22	3	249	3	FAM83E	19	49104612	Missense_Mutation	DNP	CC	TCGA-CC-A7II-01A-11D-A33K-10	1679774	49104612	10024371	156	5961											
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50200664	50200664	+	Missense_Mutation	SNP	C	C	A	rs201792786	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CPT1C	NM_001199752	exon4	c.C223A	p.L75I	TGGTTCCTCCAGC	.	128	22	99	1	C|0.999;T|0.000	92	A	50200664	C	A	50200664	3	1	42	1	0	0	0	0	1	0	0	0	3833	681	24	3	229	3	CPT1C	19	50200664	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	1096052	50200664	8928319	157	5962											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53302982	53302982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF28	NM_006969	exon4	c.C2116G	p.L706V	ATACAAGGTTTGA	.	71	41	73	0	.	91	C	53302982	G	C	53302982	3	2	42	1	0	0	0	0	1	0	0	0	17810	1000	35	4	44	4	ZNF28	19	53302982	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	3102318	53302982	5826001	158	5963											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53740851	53740851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF677	NM_182609	exon5	c.T1129C	p.C377R	CATTACATTTGTA	.	118	25	122	0	.	91	G	53740851	A	G	53740851	3	3	42	1	0	0	0	0	1	0	0	0	18081	217	8	2	629	2	ZNF677	19	53740851	Missense_Mutation	SNP	A	TCGA-CC-A7II-01A-11D-A33K-10	437869	53740851	5388132	159	5964											
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56539232	56539232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NLRP5	NM_153447	exon7	c.G1633T	p.V545L	AAGTCAGTGTTTG	.	116	62	120	1	.	162	T	56539232	G	T	56539232	3	4	42	1	0	0	0	0	1	0	0	0	10480	1029	36	3	1659	3	NLRP5	19	56539232	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	2798381	56539232	2589751	160	5965											
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133835	57133835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF71	NM_021216	exon3	c.C1180A	p.R394S	ACGGGGCGCTCGT	.	55	28	56	0	.	91	A	57133835	C	A	57133835	3	1	42	1	0	0	0	0	1	0	0	0	18111	768	27	1	1182	1	ZNF71	19	57133835	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	594603	57133835	1995148	161	5966											
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329288	33329288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NCOA6	NM_014071	exon11	c.C4772T	p.P1591L	GGCAAGGGAGTGG	.	130	54	71	0	.	292	A	33329288	G	A	33329288	3	1	42	1	0	0	0	0	1	0	0	0	10233	1232	43	3	1439	3	NCOA6	20	33329288	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		33329288	29696232	162	5967											
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34025505	34025505	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GDF5	NM_000557	exon1	c.G204C	p.G68G	GGTGGCCCCCCCA	.	89	38	60	0	.	226	G	34025505	C	G	34025505	2	3	42	1	0	0	0	0	0	0	0	1	6316	610	22	4		4	GDF5	20	34025505	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	696217	34025505	29000015	163	5968											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768554	57768554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF831	NM_178457	exon1	c.T2480C	p.V827A	TGAAAGTGGAGGA	.	140	62	81	0	.	126	C	57768554	T	C	57768554	3	2	42	1	0	0	0	0	1	0	0	0	18182	1696	59	2	2482	2	ZNF831	20	57768554	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	23743049	57768554	5256966	164	5969											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42064797	42064797	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DSCAM	NM_001271534	exon3	c.C447T	p.S149S	CACCGAGGAGGGG	.	64	19	104	0	.	101	A	42064797	G	A	42064797	2	1	42	1	0	0	0	0	0	0	0	1	4768	987	35	3		3	DSCAM	21	42064797	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		42064797	6065098	165	5970											
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45820191	45820191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TRPM2	NM_003307	exon15	c.T2258A	p.L753Q	ATGGGCTGTGGCG	.	46	15	53	0	.	92	A	45820191	T	A	45820191	3	1	42	1	0	0	0	0	1	0	0	0	16583	1580	55	4	2316	4	TRPM2	21	45820191	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	3755394	45820191	2309704	166	5971											
ZNF74	7625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20749677	20749677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF74	NM_003426	exon2	c.C89G	p.S30W	ATATATCGGGTTG	.	138	62	161	0	.	91	G	20749677	C	G	20749677	3	3	42	1	0	0	0	0	1	0	0	0	18124	893	31	4	95	4	ZNF74	22	20749677	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10		20749677	30554889	167	5972											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26298603	26298603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MYO18B	NM_032608	exon30	c.C4847A	p.A1616D	CCCAGGCCCTAGG	.	50	13	66	0	.	142	A	26298603	C	A	26298603	3	1	42	1	0	0	0	0	1	0	0	0	10066	739	26	3	4961	3	MYO18B	22	26298603	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	5548926	26298603	25005963	168	5973											
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42608089	42608089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TCF20	NM_181492	exon1	c.C3223G	p.P1075A	CGTTAGGGTCCCC	.	115	54	101	0	.	95	C	42608089	G	C	42608089	3	2	42	1	0	0	0	0	1	0	0	0	15687	1232	43	4	2697	4	TCF20	22	42608089	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	16309486	42608089	8696477	169	5974											
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42983538	42983538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	POLDIP3	NM_032311	exon8	c.1062delT	p.V354fs	GGTGATAACATTC	.	126	37	140	0	.	90	-	42983538	A	-	42983538	7	5	42	1	0	1	0	1	0	0	0	0	12195	349	13	0	211	0	POLDIP3	22	42983538	Frame_Shift_Del	DEL	A	TCGA-CC-A7II-01A-11D-A33K-10	375449	42983538	8321028	170	5975											
KIAA1644	85352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44681337	44681337	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KIAA1644	NM_001099294	exon4	c.G570T	p.P190P	CATCAGCGGTGGG	.	129	34	137	1	.	23	A	44681337	C	A	44681337	2	1	42	1	0	0	0	0	0	0	0	1	8250	755	27	1		1	KIAA1644	22	44681337	Silent	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	1697799	44681337	6623229	171	5976											
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45279146	45279146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PHF21B	NM_138415	exon13	c.G1416T	p.Q472H	GCCCCTCTGGCGG	.	38	10	29	0	.	93	A	45279146	C	A	45279146	3	1	42	1	0	0	0	0	1	0	0	0	11834	912	32	3	183	3	PHF21B	22	45279146	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	597809	45279146	6025420	172	5977											
CRELD2	79174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50312939	50312939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CRELD2	NM_024324	exon2	c.C191T	p.T64M	AAAAGACGCTGTC	.	268	17	182	0	.	90	T	50312939	C	T	50312939	3	4	42	1	0	0	0	0	1	0	0	0	3867	536	19	1	197	1	CRELD2	22	50312939	Missense_Mutation	SNP	C	TCGA-CC-A7II-01A-11D-A33K-10	5033793	50312939	991627	173	5978											
ZNF645	158506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22291221	22291221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF645	NM_152577	exon1	c.G113T	p.W38L	ACCGTTGGGGGGA	.	92	73	103	1	.	131	T	22291221	G	T	22291221	3	4	42	1	0	0	0	0	1	0	0	0	18058	1357	47	3	115	3	ZNF645	23	22291221	Missense_Mutation	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10		22291221	132979339	174	5979											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32834720	32834720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DMD	NM_004006	exon6	c.A395T	p.Q132L	GTTTGTTGCAATC	.	87	56	107	0	.	265	A	32834720	T	A	32834720	3	1	42	1	0	0	0	0	1	0	0	0	4580	1812	63	4	11201	4	DMD	23	32834720	Missense_Mutation	SNP	T	TCGA-CC-A7II-01A-11D-A33K-10	10543499	32834720	122435840	175	5980											
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334693	102334693	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NXF3	NM_022052	exon13	c.C1158T	p.A386A	TCACGGGGCTGAG	.	77	58	108	0	.	205	A	102334693	G	A	102334693	2	1	42	1	0	0	0	0	0	0	0	1	10785	1219	43	3		3	NXF3	23	102334693	Silent	SNP	G	TCGA-CC-A7II-01A-11D-A33K-10	69499973	102334693	52935867	176	5981											
KLHL21	9903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6661948	6661948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	KLHL21	NM_014851	exon1	c.G930T	p.Q310H	ACCCGTCTGCGGG	.	113	31	135	0	.	514	A	6661948	C	A	6661948	3	1	43	1	0	0	0	0	1	0	0	0	8376	912	32	3	879	3	KLHL21	1	6661948	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		6661948	242588673	1	5982											
SLC2A7	155184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9078428	9078428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC2A7	NM_207420	exon5	c.C443G	p.S148C	CTGTAGGAGATGC	.	84	14	87	0	.	514	C	9078428	G	C	9078428	3	2	43	1	0	0	0	0	1	0	0	0	14550	1174	41	4	1127	4	SLC2A7	1	9078428	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	2416480	9078428	240172193	2	5983											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16256548	16256548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SPEN	NM_015001	exon11	c.A3813C	p.E1271D	CCATGAAGATGAG	.	81	22	126	0	.	298	C	16256548	A	C	16256548	3	2	43	1	0	0	0	0	1	0	0	0	15037	69	3	5	3855	5	SPEN	1	16256548	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	7178120	16256548	232994073	3	5984											
AKR7A3	22977	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19612757	19612757	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AKR7A3	NM_012067	exon2	c.C324T	p.D108D	GAAGAGGTCCACT	.	238	68	267	1	.	90	A	19612757	G	A	19612757	2	1	43	1	0	0	0	0	0	0	0	1	476	1252	44	3		3	AKR7A3	1	19612757	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	3356209	19612757	229637864	4	5985											
DNAJC6	9829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65874377	65874377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAJC6	NM_001256864	exon17	c.A2545T	p.N849Y	GGTTTCAATGCTC	.	260	71	361	0	.	272	T	65874377	A	T	65874377	3	4	43	1	0	0	0	0	1	0	0	0	4653	130	5	4	2440	4	DNAJC6	1	65874377	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	46261620	65874377	183376244	5	5986											
BNIPL	149428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151015463	151015463	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BNIPL	NM_138278	exon5	c.C465A	p.T155T	GGGCACCAGTGAG	.	105	22	178	0	.	227	A	151015463	C	A	151015463	2	1	43	1	0	0	0	0	0	0	0	1	1480	581	21	3		3	BNIPL	1	151015463	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	85141086	151015463	98235158	6	5987											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152276077	152276077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FLG	NM_002016	exon3	c.C11285A	p.P3762Q	GACCCCGGGTGTC	.	96	25	121	0	.	106	T	152276077	G	T	152276077	3	4	43	1	0	0	0	0	1	0	0	0	5922	1116	39	1	904	1	FLG	1	152276077	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1260614	152276077	96974544	7	5988											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153920605	153920605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CRTC2	NM_181715	exon14	c.C2062A	p.R688S	CACTGCGGAATGA	.	77	14	150	0	.	228	T	153920605	G	T	153920605	3	4	43	1	0	0	0	0	1	0	0	0	3900	1116	39	1	23	1	CRTC2	1	153920605	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1644528	153920605	95330016	8	5989											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197072361	197072361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ASPM	NM_018136	exon18	c.A6020C	p.Y2007S	ATACTGTAAGCCC	.	56	11	67	0	.	615	G	197072361	T	G	197072361	3	3	43	1	0	0	0	0	1	0	0	0	1056	1638	57	5	4457	5	ASPM	1	197072361	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	43151756	197072361	52178260	9	5990											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197404289	197404289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CRB1	NM_201253	exon9	c.C3296A	p.T1099K	TAAGTACAATAGA	.	55	14	66	0	.	161	A	197404289	C	A	197404289	3	1	43	1	0	0	0	0	1	0	0	0	3848	478	17	3	3330	3	CRB1	1	197404289	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	331928	197404289	51846332	10	5991											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	223983912	223983912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TP53BP2	NM_001031685	exon13	c.C2329G	p.P777A	TGGATGGGTATGA	.	69	6	99	0	.	229	C	223983912	G	C	223983912	3	2	43	1	0	0	0	0	1	0	0	0	16381	1232	43	4	1099	4	TP53BP2	1	223983912	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	26579623	223983912	25266709	11	5992											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	228474027	228474027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	OBSCN	NM_001271223	exon39	c.G10540T	p.A3514S	CAGCGGGCCTCGG	.	46	15	65	0	.	403	T	228474027	G	T	228474027	3	4	43	1	0	0	0	0	1	0	0	0	10812	1203	42	3	9383	3	OBSCN	1	228474027	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	4490115	228474027	20776594	12	5993											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	234743411	234743411	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IRF2BP2	NM_182972	exon2	c.C1236T	p.T412T	CGGTGTGGTCCGG	.	105	19	118	0	.	90	A	234743411	G	A	234743411	2	1	43	1	0	0	0	0	0	0	0	1	7830	1335	47	3		3	IRF2BP2	1	234743411	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	6269384	234743411	14507210	13	5994											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247587376	247587376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NLRP3	NM_183395	exon3	c.C631A	p.P211T	TTTGACCCCGATG	.	130	24	175	0	.	674	A	247587376	C	A	247587376	3	1	43	1	0	0	0	0	1	0	0	0	10478	623	22	3	641	3	NLRP3	1	247587376	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	12843965	247587376	1663245	14	5995											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27456323	27456323	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CAD	NM_004341	exon20	c.T3135G	p.A1045A	CTCGGCTGAGAAC	.	54	7	66	0	.	295	G	27456323	T	G	27456323	2	3	43	1	0	0	0	0	0	0	0	1	2565	1567	55	5		5	CAD	2	27456323	Silent	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10		27456323	215743050	15	5996											
EIF2B4	8890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27590910	27590910	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	EIF2B4	NM_172195	exon6	c.G747T	p.L249L	ACGAAGCAGGGCA	.	99	9	97	2	.	90	A	27590910	C	A	27590910	2	1	43	1	0	0	0	0	0	0	0	1	5003	697	25	3		3	EIF2B4	2	27590910	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	134587	27590910	215608463	16	5997											
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31596741	31596741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	XDH	NM_000379	exon16	c.C1684A	p.Q562K	TCACTTGGAAGAG	.	46	9	57	0	.	158	T	31596741	G	T	31596741	3	4	43	1	0	0	0	0	1	0	0	0	17423	1357	47	3	2401	3	XDH	2	31596741	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	4005831	31596741	211602632	17	5998											
ZFP36L2	678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	43452474	43452474	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZFP36L2	NM_006887	exon2	c.G469C	p.E157Q	ACAGCTCGGTCTT	.	30	7	45	0	.	226	G	43452474	C	G	43452474	3	3	43	1	0	0	0	0	1	0	0	0	17644	893	31	4	1019	4	ZFP36L2	2	43452474	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	11855733	43452474	199746899	18	5999											
LRPPRC	10128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44176800	44176800	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRPPRC	NM_133259	exon17	c.1678-2A>C	.	GTTATCTGGTAAG	.	108	39	105	1	.	93	G	44176800	T	G	44176800	5	3	43	1	0	0	0	0	0	0	1	0	8965	1594	55	5	2600	5	LRPPRC	2	44176800	Splice_Site	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	724326	44176800	199022573	19	6000											
AHSA2	130872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61413791	61413791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AHSA2	NM_152392	exon6	c.T284A	p.L95Q	CTACTCTAGGGCA	.	84	22	118	0	.	289	A	61413791	T	A	61413791	3	1	43	1	0	0	0	0	1	0	0	0	419	1522	53	4	298	4	AHSA2	2	61413791	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	17236991	61413791	181785582	20	6001											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84775472	84775472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAH6	NM_001370	exon8	c.A1247T	p.Y416F	CCACTTATGGAGA	.	112	19	125	0	.	69	T	84775472	A	T	84775472	3	4	43	1	0	0	0	0	1	0	0	0	4605	449	16	4	1273	4	DNAH6	2	84775472	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	23361681	84775472	158423901	21	6002											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013018	99013018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CNGA3	NM_001298	exon8	c.A1385G	p.D462G	TCCCAGACAAGCT	.	106	17	102	0	.	96	G	99013018	A	G	99013018	3	3	43	1	0	0	0	0	1	0	0	0	3598	275	10	2	1411	2	CNGA3	2	99013018	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	14237546	99013018	144186355	22	6003											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102808473	102808473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IL1RL2	NM_003854	exon4	c.T382A	p.L128I	CCAAATTTATCAG	.	210	42	201	0	.	92	A	102808473	T	A	102808473	3	1	43	1	0	0	0	0	1	0	0	0	7664	1838	64	4	392	4	IL1RL2	2	102808473	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	3795455	102808473	140390900	23	6004											
GALNT13	114805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	155098670	155098670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GALNT13	NM_052917	exon5	c.C439A	p.L147I	TATCTACTCTCAG	.	81	31	95	0	.	95	A	155098670	C	A	155098670	3	1	43	1	0	0	0	0	1	0	0	0	6211	565	20	3	449	3	GALNT13	2	155098670	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	52290197	155098670	88100703	24	6005											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179604561	179604561	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TTN	NM_001267550	exon48	c.13399delG	p.A4467fs	GGTTAGCCATTTG	.	108	25	123	0	.	636	-	179604561	C	-	179604561	7	5	43	1	0	1	0	1	0	0	0	0	16732	739	26	0	91390	0	TTN	2	179604561	Frame_Shift_Del	DEL	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	24505891	179604561	63594812	25	6006											
ALS2CR12	130540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202211384	202211384	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ALS2CR12	NM_001127391	exon5	c.G249T	p.V83V	AGGTGACACGTTG	.	46	11	63	0	.	154	A	202211384	C	A	202211384	2	1	43	1	0	0	0	0	0	0	0	1	553	465	17	3		3	ALS2CR12	2	202211384	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	22606823	202211384	40987989	26	6007											
SLC6A11	6538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10970961	10970961	+	Missense_Mutation	SNP	G	G	A	rs202136147		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC6A11	NM_014229	exon10	c.G1307A	p.R436Q	ACCGGCGGGAGCT	.	113	35	107	0	G|0.999;A|0.000	132	A	10970961	G	A	10970961	3	1	43	1	0	0	0	0	1	0	0	0	14674	1116	39	1	1345	1	SLC6A11	3	10970961	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10		10970961	187051469	27	6008											
LRRC3B	116135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	26751375	26751375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRC3B	NM_052953	exon2	c.T212A	p.L71Q	TGTATCTGGACTC	.	69	19	89	0	.	94	A	26751375	T	A	26751375	3	1	43	1	0	0	0	0	1	0	0	0	8996	1580	55	4	214	4	LRRC3B	3	26751375	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	15780414	26751375	171271055	28	6009											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38938564	38938564	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCN11A	NM_014139	exon14	c.T2175A	p.R725R	GAAGCTACGGCCA	.	94	46	194	0	.	99	T	38938564	A	T	38938564	2	4	43	1	0	0	0	0	0	0	0	1	13913	378	14	4		4	SCN11A	3	38938564	Silent	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	12187189	38938564	159083866	29	6010											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48697293	48697293	+	Silent	SNP	C	C	T	rs200302496		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CELSR3	NM_001407	exon1	c.G2775A	p.V925V	GTAGGTCACCTGG	.	151	77	203	0	C|0.999;T|0.000	523	T	48697293	C	T	48697293	2	4	43	1	0	0	0	0	0	0	0	1	3223	813	29	3		3	CELSR3	3	48697293	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	9758729	48697293	149325137	30	6011											
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53851839	53851839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CHDH	NM_018397	exon9	c.G1750A	p.V584I	TGTAGACAGGGAC	.	55	16	46	0	.	91	T	53851839	C	T	53851839	3	4	43	1	0	0	0	0	1	0	0	0	3333	478	17	3	38	3	CHDH	3	53851839	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	5154546	53851839	144170591	31	6012											
IL17RD	54756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57139919	57139919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IL17RD	NM_017563	exon7	c.A713G	p.H238R	CCTTCGTGCTTGA	.	93	34	134	1	.	500	C	57139919	T	C	57139919	3	2	43	1	0	0	0	0	1	0	0	0	7642	1696	59	2	1534	2	IL17RD	3	57139919	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	3288080	57139919	140882511	32	6013											
IQCB1	9657	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	121514404	121514404	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	IQCB1	NM_001023570	exon10	c.C886T	p.Q296X	CTGCTTGATGTAG	.	212	14	231	0	.	90	A	121514404	G	A	121514404	4	1	43	1	0	0	0	0	0	1	0	0	7803	1299	45	3	934	3	IQCB1	3	121514404	Nonsense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	64374485	121514404	76508026	33	6014											
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135721147	135721147	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PPP2R3A	NM_002718	exon2	c.T807C	p.D269D	TAATGATACAATT	.	120	25	118	0	.	662	C	135721147	T	C	135721147	2	2	43	1	0	0	0	0	0	0	0	1	12388	1403	49	2		2	PPP2R3A	3	135721147	Silent	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	14206743	135721147	62301283	34	6015											
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156271447	156271447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SSR3	NM_007107	exon2	c.A257C	p.H86P	TACTTGTGCTTGA	.	99	21	135	0	.	90	G	156271447	T	G	156271447	3	3	43	1	0	0	0	0	1	0	0	0	15191	1696	59	5	316	5	SSR3	3	156271447	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	20550300	156271447	41750983	35	6016											
TP63	8626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	189590736	189590736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TP63	NM_001114979	exon10	c.C1301T	p.T434M	TTGAAACGTACAG	.	297	117	288	0	.	421	T	189590736	C	T	189590736	3	4	43	1	0	0	0	0	1	0	0	0	16389	536	19	1	1385	1	TP63	3	189590736	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	33319289	189590736	8431694	36	6017											
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193025125	193025125	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ATP13A5	NM_198505	exon22	c.C2559T	p.N853N	ACAGTCGTTAGCT	.	114	38	91	0	.	144	A	193025125	G	A	193025125	2	1	43	1	0	0	0	0	0	0	0	1	1127	1136	40	1		1	ATP13A5	3	193025125	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	3434389	193025125	4997305	37	6018											
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	22425952	22425952	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPR125	NM_145290	exon11	c.T1467C	p.I489I	ACTTGCAATGTCA	.	172	100	182	0	.	91	G	22425952	A	G	22425952	2	3	43	1	0	0	0	0	0	0	0	1	6639	126	5	2		2	GPR125	4	22425952	Silent	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10		22425952	168728324	38	6019											
ATP10D	57205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47525056	47525056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ATP10D	NM_020453	exon4	c.C513G	p.C171W	CCGATGCTGGAAA	.	77	20	136	0	.	93	G	47525056	C	G	47525056	3	3	43	1	0	0	0	0	1	0	0	0	1118	805	28	4	523	4	ATP10D	4	47525056	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	25099104	47525056	143629220	39	6020											
RNF150	57484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141888999	141888999	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	RNF150	NM_020724	exon2	c.T513C	p.I171I	CTCAGGAATCATT	.	49	25	88	0	.	227	G	141888999	A	G	141888999	2	3	43	1	0	0	0	0	0	0	0	1	13451	242	9	2		2	RNF150	4	141888999	Silent	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	94363943	141888999	49265277	40	6021											
ASB5	140458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177146466	177146466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ASB5	NM_080874	exon2	c.C223T	p.H75Y	CTTCATGTAGTGG	.	109	47	174	0	.	228	A	177146466	G	A	177146466	3	1	43	1	0	0	0	0	1	0	0	0	1026	1377	48	3	790	3	ASB5	4	177146466	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	35257467	177146466	14007810	41	6022											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1330438	1330438	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CLPTM1L	NM_030782	exon9	c.G1037C	p.S346T	AGCAGGCTCGTCT	.	166	9	221	0	.	153	G	1330438	C	G	1330438	3	3	43	1	0	0	0	0	1	0	0	0	3555	797	28	4	615	4	CLPTM1L	5	1330438	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		1330438	179584822	42	6023											
MARCH6	10299	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10415698	10415698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MARCH6	NM_005885	exon21	c.A2065G	p.I689V	CTAACCATAAGGG	.	93	40	95	1	.	501	G	10415698	A	G	10415698	3	3	43	1	0	0	0	0	1	0	0	0	9305	217	8	2	2147	2	MARCH6	5	10415698	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	9085260	10415698	170499562	43	6024											
BRD8	10902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137485482	137485482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BRD8	NM_139199	exon23	c.A3125G	p.E1042G	TGAGCCTCCCCCT	.	72	5	93	0	.	91	C	137485482	T	C	137485482	3	2	43	1	0	0	0	0	1	0	0	0	1506	1551	54	2	602	2	BRD8	5	137485482	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	127069784	137485482	43429778	44	6025											
PCDHA11	56138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140250482	140250482	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PCDHA11	NM_018902	exon1	c.G1794A	p.A598A	GGATGCGGACTCA	.	23	8	46	1	.	67	A	140250482	G	A	140250482	2	1	43	1	0	0	0	0	0	0	0	1	11521	1103	39	1		1	PCDHA11	5	140250482	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	2765000	140250482	40664778	45	6026											
PCDHGB7	56099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798922	140798922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PCDHGB7	NM_018927	exon1	c.G1496A	p.R499Q	AGTCACGAACGCT	.	67	15	97	1	.	29	A	140798922	G	A	140798922	3	1	43	1	0	0	0	0	1	0	0	0	11568	1058	37	1	1498	1	PCDHGB7	5	140798922	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	548440	140798922	40116338	46	6027											
RANBP17	64901	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170668124	170668124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	RANBP17	NM_022897	exon23	c.C2615T	p.S872L	TGCTGTCAGTGTC	.	34	7	46	0	.	524	T	170668124	C	T	170668124	3	4	43	1	0	0	0	0	1	0	0	0	13027	838	29	3	2705	3	RANBP17	5	170668124	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	29869202	170668124	10247136	47	6028											
DCDC2	51473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24278324	24278324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DCDC2	NM_001195610	exon8	c.A875T	p.K292I	TTTTGTTTCAATT	.	71	13	112	0	.	91	A	24278324	T	A	24278324	3	1	43	1	0	0	0	0	1	0	0	0	4285	1841	64	4	571	4	DCDC2	6	24278324	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10		24278324	146836743	48	6029											
SLC17A1	6568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25799088	25799088	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC17A1	NM_005074	exon12	c.C1329G	p.G443G	AATTAGGCCAGTC	.	36	13	61	0	.	94	C	25799088	G	C	25799088	2	2	43	1	0	0	0	0	0	0	0	1	14416	1190	42	4		4	SLC17A1	6	25799088	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1520764	25799088	145315979	49	6030											
HIST1H4C	8364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26104441	26104441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	HIST1H4C	NM_003542	exon1	c.A266G	p.Y89C	TAGTATATGCCCT	.	83	16	79	0	.	68	G	26104441	A	G	26104441	3	3	43	1	0	0	0	0	1	0	0	0	7167	449	16	2	268	2	HIST1H4C	6	26104441	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	305353	26104441	145010626	50	6031											
BTN2A1	11120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26468554	26468554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	BTN2A1	NM_007049	exon8	c.T1361A	p.L454Q	TCTTCCTGGACTA	.	121	24	132	0	.	92	A	26468554	T	A	26468554	3	1	43	1	0	0	0	0	1	0	0	0	1560	1580	55	4	1414	4	BTN2A1	6	26468554	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	364113	26468554	144646513	51	6032											
NKAPL	222698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28227197	28227197	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NKAPL	NM_001007531	exon1	c.T48C	p.S16S	GGGCTCTCGGAGA	.	98	19	91	0	.	70	C	28227197	T	C	28227197	2	2	43	1	0	0	0	0	0	0	0	1	10440	1538	54	2		2	NKAPL	6	28227197	Silent	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	1758643	28227197	142887870	52	6033											
MSH5	4439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31726650	31726650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MSH5	NM_025259	exon15	c.C1375G	p.L459V	ATCCCTCTGGTGA	.	93	22	128	0	.	661	G	31726650	C	G	31726650	3	3	43	1	0	0	0	0	1	0	0	0	9873	912	32	4	1429	4	MSH5	6	31726650	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	3499453	31726650	139388417	53	6034											
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu	37	6	46609971	46609971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CYP39A1	NM_016593	exon2	c.G242A	p.G81E	TTAATTCCTTCTT	.	48	4	79	0	.	91	T	46609971	C	T	46609971	3	4	43	1	0	0	0	0	1	0	0	0	4177	855	30	3	1211	3	CYP39A1	6	46609971	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	14883321	46609971	124505096	54	6035											
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49583450	49583450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	RHAG	NM_000324	exon4	c.C527A	p.A176D	CCAAAGGCATGGA	.	108	20	109	0	.	154	T	49583450	G	T	49583450	3	4	43	1	0	0	0	0	1	0	0	0	13315	1203	42	3	730	3	RHAG	6	49583450	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	2973479	49583450	121531617	55	6036											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65622636	65622636	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	EYS	NM_001142800	exon16	c.A2382T	p.R794R	CTCACATCTGAAA	.	48	5	50	0	.	660	A	65622636	T	A	65622636	2	1	43	1	0	0	0	0	0	0	0	1	5332	1449	50	4		4	EYS	6	65622636	Silent	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	16039186	65622636	105492431	56	6037											
MTO1	25821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74202034	74202034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MTO1	NM_001123226	exon11	c.A1835G	p.Y612C	AGAAGTATACTAA	.	68	21	58	0	.	96	G	74202034	A	G	74202034	3	3	43	1	0	0	0	0	1	0	0	0	9953	449	16	2	1956	2	MTO1	6	74202034	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	8579398	74202034	96913033	57	6038											
FUT9	10690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96651384	96651384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FUT9	NM_006581	exon3	c.C353A	p.T118K	ATCTGACAAATTT	.	96	17	106	0	.	95	A	96651384	C	A	96651384	3	1	43	1	0	0	0	0	1	0	0	0	6111	478	17	3	355	3	FUT9	6	96651384	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	22449350	96651384	74463683	58	6039											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106969168	106969168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AIM1	NM_001624	exon2	c.T2861C	p.L954P	CAAAACTGAAGAA	.	111	45	99	0	.	139	C	106969168	T	C	106969168	3	2	43	1	0	0	0	0	1	0	0	0	430	1580	55	2	2867	2	AIM1	6	106969168	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	10317784	106969168	64145899	59	6040											
NT5DC1	221294	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116439079	116439079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NT5DC1	NM_152729	exon6	c.A500G	p.Q167R	CTATACAACACAA	.	55	10	83	1	.	226	G	116439079	A	G	116439079	3	3	43	1	0	0	0	0	1	0	0	0	10690	130	5	2	522	2	NT5DC1	6	116439079	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	9469911	116439079	54675988	60	6041											
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	117128020	117128020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPRC6A	NM_148963	exon3	c.T848A	p.V283D	TCAAAAACATGGA	.	47	12	45	0	.	96	T	117128020	A	T	117128020	3	4	43	1	0	0	0	0	1	0	0	0	6728	43	2	4	1948	4	GPRC6A	6	117128020	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	688941	117128020	53987047	61	6042											
FUCA2	2519	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143828467	143828467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FUCA2	NM_032020	exon2	c.T319A	p.F107I	CTGTAAATAGTGG	.	84	12	101	1	.	91	T	143828467	A	T	143828467	3	4	43	1	0	0	0	0	1	0	0	0	6095	101	4	4	1108	4	FUCA2	6	143828467	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	26700447	143828467	27286600	62	6043											
FBXO30	84085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146127013	146127013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FBXO30	NM_032145	exon2	c.G529C	p.E177Q	AAGATTCTTCATC	.	63	21	55	0	.	291	G	146127013	C	G	146127013	3	3	43	1	0	0	0	0	1	0	0	0	5740	922	32	4	1716	4	FBXO30	6	146127013	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	2298546	146127013	24988054	63	6044											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12666242	12666242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCIN	NM_001112706	exon8	c.A1015C	p.I339L	ACACCAATCTTCA	.	78	51	82	0	.	24	C	12666242	A	C	12666242	3	2	43	1	0	0	0	0	1	0	0	0	13905	101	4	5	1045	5	SCIN	7	12666242	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10		12666242	146472421	64	6045											
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36435972	36435972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ANLN	NM_018685	exon2	c.G116T	p.R39L	CTAAGCGAGCTAG	.	163	33	165	0	.	517	T	36435972	G	T	36435972	3	4	43	1	0	0	0	0	1	0	0	0	694	1058	37	1	122	1	ANLN	7	36435972	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	23769730	36435972	122702691	65	6046											
ZNF716	441234	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	57529255	57529255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF716	NM_001159279	exon4	c.T1088A	p.F363Y	TTACCTTCTCCTC	.	99	35	116	1	.	24	A	57529255	T	A	57529255	3	1	43	1	0	0	0	0	1	0	0	0	18116	1783	62	4	1102	4	ZNF716	7	57529255	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	21093283	57529255	101609408	66	6047											
CD36	948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80295781	80295781	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CD36	NM_001127444	exon6	c.C724G	p.H242D	GAAAGTCACTGCG	.	33	13	36	0	.	69	G	80295781	C	G	80295781	3	3	43	1	0	0	0	0	1	0	0	0	3007	826	29	4	746	4	CD36	7	80295781	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	22766526	80295781	78842882	67	6048											
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98645348	98645348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SMURF1	NM_020429	exon11	c.G1189T	p.G397C	AATGACCAGCTTG	.	77	20	71	0	.	661	A	98645348	C	A	98645348	3	1	43	1	0	0	0	0	1	0	0	0	14819	594	21	3	1120	3	SMURF1	7	98645348	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	18349567	98645348	60493315	68	6049											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100677761	100677761	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MUC17	NM_001040105	exon3	c.T3064A	p.S1022T	GCCAGTTCACCTC	.	197	34	205	0	.	95	A	100677761	T	A	100677761	3	1	43	1	0	0	0	0	1	0	0	0	9974	1783	62	4	3074	4	MUC17	7	100677761	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	2032413	100677761	58460902	69	6050											
LHFPL3	375612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	104377307	104377307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	.	NM_199000	exon2	c.G631C	p.G211R	GTGCTTGGTAATC	.	65	16	73	0	.	.	C	104377307	G	C	104377307	3	2	43	1	0	0	0	0	1	0	0	0	8766	1348	47	4	637	4	LHFPL3	7	104377307	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	3699546	104377307	54761356	70	6051											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108113028	108113028	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PNPLA8	NM_001256008	exon10	c.T2166C	p.S722S	ATTTCGACTTTCA	.	97	15	84	0	.	135	G	108113028	A	G	108113028	2	3	43	1	0	0	0	0	0	0	0	1	12171	272	10	2		2	PNPLA8	7	108113028	Silent	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	3735721	108113028	51025635	71	6052											
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128485033	128485033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FLNC	NM_001127487	exon21	c.G3514A	p.E1172K	GTCGGTGAGGCAG	.	97	22	82	0	.	141	A	128485033	G	A	128485033	3	1	43	1	0	0	0	0	1	0	0	0	5935	1291	45	3	3596	3	FLNC	7	128485033	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	20372005	128485033	30653630	72	6053											
CHRM2	1129	ucsc.edu;mdanderson.org	37	7	136701545	136701545	+	RNA	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CHRM2	.	.	.	.	GTTACGGTCCTAT	.	64	29	85	0	.	94	T	136701545	G	T	136701545	1	4	43	0	1	0	0	0	0	0	0	0	3377	1276	44	3		3	CHRM2	7	136701545	RNA	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	8216512	136701545	22437118	73	6054											
ABP1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150554178	150554178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ABP1	NM_001091	exon2	c.T620C	p.V207A	GCTATGTAGAAGG	.	32	8	34	0	.	139	C	150554178	T	C	150554178	3	2	43	1	0	0	0	0	1	0	0	0	98	1638	57	2	622	2	ABP1	7	150554178	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	13852633	150554178	8584485	74	6055											
DNAJB6	10049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157155965	157155965	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAJB6	NM_005494	exon3	c.175+1G>T	.	CGGATGGTGAGTG	.	61	14	81	0	.	93	T	157155965	G	T	157155965	5	4	43	1	0	0	0	0	0	0	1	0	4624	1275	44	3	182	3	DNAJB6	7	157155965	Splice_Site	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	6601787	157155965	1982698	75	6056											
WDR60	55112	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	158734669	158734669	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	WDR60	NM_018051	exon24	c.G2832C	p.P944P	GTTTCCGCTCCTG	.	28	6	35	0	.	92	C	158734669	G	C	158734669	2	2	43	1	0	0	0	0	0	0	0	1	17308	1074	38	4		4	WDR60	7	158734669	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1578704	158734669	403994	76	6057											
ZDHHC2	51201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17072756	17072756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	.	NM_016353	exon11	c.C961T	p.H321Y	GAAAACCATCAGT	.	59	30	86	0	.	.	T	17072756	C	T	17072756	3	4	43	1	0	0	0	0	1	0	0	0	17607	594	21	3	1003	3	ZDHHC2	8	17072756	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		17072756	129291266	77	6058											
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82670408	82670408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CHMP4C	NM_152284	exon4	c.A515T	p.E172V	AATTGGAACAGGA	.	94	18	72	0	.	92	T	82670408	A	T	82670408	3	4	43	1	0	0	0	0	1	0	0	0	3358	246	9	4	529	4	CHMP4C	8	82670408	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	65597652	82670408	63693614	78	6059											
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	86041583	86041583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRCC1	NM_033402	exon10	c.A1595G	p.E532G	AAATGGAGAGACA	.	289	105	291	0	.	90	G	86041583	A	G	86041583	3	3	43	1	0	0	0	0	1	0	0	0	9026	304	11	2	1633	2	LRRCC1	8	86041583	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	3371175	86041583	60322439	79	6060											
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	101153047	101153047	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FBXO43	NM_001029860	exon2	c.C1435T	p.Q479X	TACACTGCAGTAC	.	105	24	128	0	.	226	A	101153047	G	A	101153047	4	1	43	1	0	0	0	0	0	1	0	0	5752	1328	46	3	707	3	FBXO43	8	101153047	Nonsense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	15111464	101153047	45210975	80	6061											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113326812	113326812	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CSMD3	NM_198123	exon48	c.T7395C	p.S2465S	TCCAGTAGAATCT	.	101	13	112	0	.	1132	G	113326812	A	G	113326812	2	3	43	1	0	0	0	0	0	0	0	1	3946	407	15	2		2	CSMD3	8	113326812	Silent	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	12173765	113326812	33037210	81	6062											
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121706115	121706115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SNTB1	NM_021021	exon2	c.A605G	p.K202R	CCTTTCTTCACAT	.	69	17	85	0	.	228	C	121706115	T	C	121706115	3	2	43	1	0	0	0	0	1	0	0	0	14872	1609	56	2	1035	2	SNTB1	8	121706115	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	8379303	121706115	24657907	82	6063											
FBXO32	114907	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	124553194	124553194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FBXO32	NM_001242463	exon1	c.G61A	p.G21S	TCCAGCCGTCGGC	.	95	29	78	0	.	660	T	124553194	C	T	124553194	3	4	43	1	0	0	0	0	1	0	0	0	5742	652	23	1	1042	1	FBXO32	8	124553194	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	2847079	124553194	21810828	83	6064											
GLIS3	169792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4117860	4117860	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GLIS3	NM_001042413	exon4	c.G1618C	p.G540R	GGCAACCGGCCCA	.	262	232	69	0	.	91	G	4117860	C	G	4117860	3	3	43	1	0	0	0	0	1	0	0	0	6447	652	23	4	1206	4	GLIS3	9	4117860	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		4117860	137095571	84	6065											
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	6015579	6015579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	RANBP6	NM_001243203	exon1	c.C29T	p.P10L	GTCGCCGGCACCC	.	61	56	14	0	.	229	A	6015579	G	A	6015579	3	1	43	1	0	0	0	0	1	0	0	0	13031	1116	39	1	3292	1	RANBP6	9	6015579	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1897719	6015579	135197852	85	6066											
GNE	10020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36223377	36223377	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GNE	NM_001128227	exon8	c.G1497A	p.L499L	TACTCCCAAAATT	.	62	15	73	0	.	115	T	36223377	C	T	36223377	2	4	43	1	0	0	0	0	0	0	0	1	6522	593	21	3		3	GNE	9	36223377	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	30207798	36223377	104990054	86	6067											
ZNF510	22869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	99525914	99525914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF510	NM_014930	exon4	c.G130A	p.A44T	CTGATGCCTGTAA	.	54	27	66	0	.	90	T	99525914	C	T	99525914	3	4	43	1	0	0	0	0	1	0	0	0	17951	753	26	3	1933	3	ZNF510	9	99525914	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	63302537	99525914	41687517	87	6068											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107595004	107595004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ABCA1	NM_005502	exon12	c.G1360A	p.D454N	AGCCATCCAACTG	.	105	24	158	0	.	1016	T	107595004	C	T	107595004	3	4	43	1	0	0	0	0	1	0	0	0	28	855	30	3	5581	3	ABCA1	9	107595004	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	8069090	107595004	33618427	88	6069											
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	121930349	121930349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DBC1	NM_014618	exon8	c.C1299G	p.N433K	GCTGTTGTTCCCG	.	36	13	45	0	.	582	C	121930349	G	C	121930349	3	2	43	1	0	0	0	0	1	0	0	0	4247	1368	48	4	990	4	DBC1	9	121930349	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	14335345	121930349	19283082	89	6070											
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	121976358	121976358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DBC1	NM_014618	exon6	c.G761A	p.G254E	CCCTCCCCATTGC	.	70	40	110	0	.	582	T	121976358	C	T	121976358	3	4	43	1	0	0	0	0	1	0	0	0	4247	623	22	3	1536	3	DBC1	9	121976358	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	46009	121976358	19237073	90	6071											
TTF1	7270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135276847	135276847	+	Silent	SNP	C	C	T	rs61741946		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TTF1	NM_007344	exon2	c.G1362A	p.A454A	CCTTGGCGCCTCT	.	86	50	112	0	C|0.987;T|0.013	94	T	135276847	C	T	135276847	2	4	43	1	0	0	0	0	0	0	0	1	16715	755	27	1		1	TTF1	9	135276847	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	13300489	135276847	5936584	91	6072											
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15290660	15290660	+	Silent	SNP	C	C	A	rs151163427	byfrequency;alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FAM171A1	NM_001010924	exon5	c.G732T	p.A244A	CCGCCACGCCGCG	.	81	26	113	0	C|1.000;T|0.000	138	A	15290660	C	A	15290660	2	1	43	1	0	0	0	0	0	0	0	1	5490	523	19	1		1	FAM171A1	10	15290660	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		15290660	120244087	92	6073											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26455035	26455035	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MYO3A	NM_017433	exon27	c.C3039G	p.R1013R	GCCCCGCATGAGC	.	46	19	81	0	.	1007	G	26455035	C	G	26455035	2	3	43	1	0	0	0	0	0	0	0	1	10076	697	25	4		4	MYO3A	10	26455035	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	11164375	26455035	109079712	93	6074											
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79569437	79569437	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DLG5	NM_004747	exon24	c.C4515T	p.I1505I	CTTTTTGATGAAG	.	207	55	240	0	.	98	A	79569437	G	A	79569437	2	1	43	1	0	0	0	0	0	0	0	1	4558	1280	45	3		3	DLG5	10	79569437	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	53114402	79569437	55965310	94	6075											
HECTD2	143279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93252211	93252211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	HECTD2	NM_182765	exon13	c.C1402G	p.L468V	CTTCTTCTAATTC	.	104	39	73	0	.	658	G	93252211	C	G	93252211	3	3	43	1	0	0	0	0	1	0	0	0	7040	912	32	4	1476	4	HECTD2	10	93252211	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	13682774	93252211	42282536	95	6076											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6550235	6550235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNHD1	NM_144666	exon12	c.T2231A	p.V744E	ACTACGTGACGCT	.	81	14	95	0	.	24	A	6550235	T	A	6550235	3	1	43	1	0	0	0	0	1	0	0	0	4668	1696	59	4	2278	4	DNHD1	11	6550235	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10		6550235	128456281	96	6077											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6644337	6644337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DCHS1	NM_003737	exon21	c.C8570A	p.P2857H	AAATAGGGGGAAG	.	44	17	35	0	.	73	T	6644337	G	T	6644337	3	4	43	1	0	0	0	0	1	0	0	0	4287	1232	43	3	1330	3	DCHS1	11	6644337	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	94102	6644337	128362179	97	6078											
SLC6A5	9152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	20622906	20622906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SLC6A5	NM_004211	exon2	c.T235A	p.S79T	GTGGGGTCTTGCA	.	15	7	25	0	.	156	A	20622906	T	A	20622906	3	1	43	1	0	0	0	0	1	0	0	0	14687	1667	58	4	241	4	SLC6A5	11	20622906	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	13978569	20622906	114383610	98	6079											
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35513688	35513688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PAMR1	NM_001001991	exon3	c.G284T	p.R95L	CCATTTCGGCAGC	.	74	25	68	0	.	70	A	35513688	C	A	35513688	3	1	43	1	0	0	0	0	1	0	0	0	11413	884	31	1	1969	1	PAMR1	11	35513688	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	14890782	35513688	99492828	99	6080											
OR4P4	81300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55405983	55405983	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	OR4P4	NM_001004124	exon1	c.C150A	p.T50T	GTGCACCCAGCTC	.	68	24	66	0	.	68	A	55405983	C	A	55405983	2	1	43	1	0	0	0	0	0	0	0	1	11080	610	22	3		3	OR4P4	11	55405983	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	19892295	55405983	79600533	100	6081											
SPTBN2	6712	ucsc.edu;bcgsc.ca	37	11	66472170	66472170	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SPTBN2	NM_006946	exon14	c.C2577T	p.S859S	GGCCTCGCTGAGC	.	42	4	62	0	.	155	A	66472170	G	A	66472170	2	1	43	1	0	0	0	0	0	0	0	1	15119	1078	38	1		1	SPTBN2	11	66472170	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	11066187	66472170	68534346	101	6082											
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104819283	104819283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CASP4	NM_001225	exon6	c.T902C	p.I301T	AAAGCAATGAAGT	.	48	21	78	0	.	660	G	104819283	A	G	104819283	3	3	43	1	0	0	0	0	1	0	0	0	2673	101	4	2	243	2	CASP4	11	104819283	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	38347113	104819283	30187233	102	6083											
CASP5	838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104872821	104872821	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CASP5	NM_001136112	exon5	c.G690T	p.V230V	CATCCCCACGATG	.	93	26	121	0	.	661	A	104872821	C	A	104872821	2	1	43	1	0	0	0	0	0	0	0	1	2674	581	21	3		3	CASP5	11	104872821	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	53538	104872821	30133695	103	6084											
PDZD3	79849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119059407	119059407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PDZD3	NM_001168468	exon9	c.G1118C	p.G373A	CCCGGGGCAGCAG	.	102	44	178	0	.	153	C	119059407	G	C	119059407	3	2	43	1	0	0	0	0	1	0	0	0	11702	1203	42	4	1152	4	PDZD3	11	119059407	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	14186586	119059407	15947109	104	6085											
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120811107	120811107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GRIK4	NM_014619	exon12	c.G1528T	p.V510L	GAGAAGGTGATTG	.	55	15	75	0	.	92	T	120811107	G	T	120811107	3	4	43	1	0	0	0	0	1	0	0	0	6776	1261	44	3	1574	3	GRIK4	11	120811107	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1751700	120811107	14195409	105	6086											
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1192448	1192448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ERC1	NM_178039	exon3	c.C788G	p.T263R	AGCTGACAGAGGA	.	107	13	76	0	.	660	G	1192448	C	G	1192448	3	3	43	1	0	0	0	0	1	0	0	0	5210	478	17	4	794	4	ERC1	12	1192448	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		1192448	132659447	106	6087											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26752255	26752255	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ITPR2	NM_002223	exon30	c.G3825A	p.R1275R	GATGTGCCGCATG	.	84	14	87	0	.	542	T	26752255	C	T	26752255	2	4	43	1	0	0	0	0	0	0	0	1	7921	726	26	3		3	ITPR2	12	26752255	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	25559807	26752255	107099640	107	6088											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40740721	40740721	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRRK2	NM_198578	exon42	c.A6276T	p.L2092F	AAAATTACCTGGT	.	42	17	43	0	.	533	T	40740721	A	T	40740721	3	4	43	1	0	0	0	0	1	0	0	0	9033	388	14	4	6442	4	LRRK2	12	40740721	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	13988466	40740721	93111174	108	6089											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43769295	43769295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ADAMTS20	NM_025003	exon36	c.G5333A	p.C1778Y	AAAGGACATTGAT	.	83	23	94	0	.	795	T	43769295	C	T	43769295	3	4	43	1	0	0	0	0	1	0	0	0	266	478	17	3	414	3	ADAMTS20	12	43769295	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	3028574	43769295	90082600	109	6090											
AMIGO2	347902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	47471425	47471425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AMIGO2	NM_181847	exon2	c.C1361T	p.S454F	TCAGCGGAGGCAT	.	126	20	135	0	.	92	A	47471425	G	A	47471425	3	1	43	1	0	0	0	0	1	0	0	0	576	1174	41	3	211	3	AMIGO2	12	47471425	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	3702130	47471425	86380470	110	6091											
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49743205	49743205	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DNAJC22	NM_024902	exon2	c.C550G	p.R184G	CTCTATCGTCTGG	.	42	19	37	0	.	159	G	49743205	C	G	49743205	3	3	43	1	0	0	0	0	1	0	0	0	4641	884	31	4	552	4	DNAJC22	12	49743205	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	2271780	49743205	84108690	111	6092											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	50869325	50869325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LARP4	NM_052879	exon16	c.G1853T	p.S618I	AGTTAAGTTATGC	.	82	14	103	0	.	91	T	50869325	G	T	50869325	3	4	43	1	0	0	0	0	1	0	0	0	8630	1029	36	3	1919	3	LARP4	12	50869325	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1126120	50869325	82982570	112	6093											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52056683	52056683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCN8A	NM_014191	exon2	c.C82T	p.R28C	GAGAGGCGCATTG	.	80	20	94	0	.	29	T	52056683	C	T	52056683	3	4	43	1	0	0	0	0	1	0	0	0	13924	768	27	1	84	1	SCN8A	12	52056683	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	1187358	52056683	81795212	113	6094											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757483	54757483	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPR84	NM_020370	exon2	c.C153G	p.L51L	GGTACGGAGCTTG	.	66	23	68	0	.	523	C	54757483	G	C	54757483	2	2	43	1	0	0	0	0	0	0	0	1	6714	1161	41	4		4	GPR84	12	54757483	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	2700800	54757483	79094412	114	6095											
LACRT	90070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55024698	55024698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LACRT	NM_033277	exon5	c.G395A	p.S132N	AATAGACTGAATT	.	128	13	133	0	.	90	T	55024698	C	T	55024698	3	4	43	1	0	0	0	0	1	0	0	0	8596	565	20	3	25	3	LACRT	12	55024698	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	267215	55024698	78827197	115	6096											
HCFC2	29915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104480666	104480666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	HCFC2	NM_013320	exon8	c.A1105G	p.T369A	AAAGCCACTACCA	.	116	28	91	0	.	92	G	104480666	A	G	104480666	3	3	43	1	0	0	0	0	1	0	0	0	6993	159	6	2	1135	2	HCFC2	12	104480666	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	49455968	104480666	29371229	116	6097											
MVK	4598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110032905	110032905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MVK	NM_000431	exon10	c.C958A	p.Q320K	CTCTGCCAGGTGA	.	51	7	73	0	.	115	A	110032905	C	A	110032905	3	1	43	1	0	0	0	0	1	0	0	0	9995	595	21	3	992	3	MVK	12	110032905	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	5552239	110032905	23818990	117	6098											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130015669	130015669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TMEM132D	NM_133448	exon3	c.T1050A	p.D350E	AGTATAATCCGTG	.	48	13	58	0	.	106	T	130015669	A	T	130015669	3	4	43	1	0	0	0	0	1	0	0	0	16044	98	4	4	2277	4	TMEM132D	12	130015669	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	19982764	130015669	3836226	118	6099											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39422758	39422758	+	Silent	SNP	T	T	C	rs112083916	byfrequency;alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FREM2	NM_207361	exon8	c.T6330C	p.L2110L	AGCCCTTGGCGAG	.	34	16	56	0	T|0.995;G|0.005	100	C	39422758	T	C	39422758	2	2	43	1	0	0	0	0	0	0	0	1	6045	1799	63	2		2	FREM2	13	39422758	Silent	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10		39422758	75747120	119	6100											
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42875560	42875560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	AKAP11	NM_016248	exon8	c.C2678T	p.S893L	TGACATCATTGGA	.	54	26	69	0	.	227	T	42875560	C	T	42875560	3	4	43	1	0	0	0	0	1	0	0	0	447	838	29	3	2700	3	AKAP11	13	42875560	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	3452802	42875560	72294318	120	6101											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356467	42356467	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LRFN5	NM_152447	exon3	c.C639T	p.D213D	ACCTGACCCTCTC	.	57	28	91	0	.	97	T	42356467	C	T	42356467	2	4	43	1	0	0	0	0	0	0	0	1	8941	506	18	3		3	LRFN5	14	42356467	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		42356467	64993073	121	6102											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64491167	64491167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SYNE2	NM_182914	exon39	c.C5830G	p.Q1944E	TTGCAGCAGCTAC	.	44	9	30	0	.	164	G	64491167	C	G	64491167	3	3	43	1	0	0	0	0	1	0	0	0	15443	711	25	4	5980	4	SYNE2	14	64491167	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	22134700	64491167	42858373	122	6103											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67647566	67647566	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPHN	NM_020806	exon23	c.G2222C	p.G741A	CCAATGGATTGTT	.	56	10	77	0	.	228	C	67647566	G	C	67647566	3	2	43	1	0	0	0	0	1	0	0	0	6610	1174	41	4	2312	4	GPHN	14	67647566	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	3156399	67647566	39701974	123	6104											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102508727	102508727	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DYNC1H1	NM_001376	exon68	c.G12282A	p.V4094V	GTGGGTGATGCTG	.	57	14	50	0	.	98	A	102508727	G	A	102508727	2	1	43	1	0	0	0	0	0	0	0	1	4841	1277	45	3		3	DYNC1H1	14	102508727	Silent	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	34861161	102508727	4840813	124	6105											
CASC5	57082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40916828	40916828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CASC5	NM_170589	exon11	c.G4444A	p.G1482R	AAAAAAGGACAGA	.	87	46	121	1	.	660	A	40916828	G	A	40916828	3	1	43	1	0	0	0	0	1	0	0	0	2663	1001	35	3	4482	3	CASC5	15	40916828	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10		40916828	61614564	125	6106											
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43622597	43622597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	LCMT2	NM_014793	exon1	c.G91A	p.G31R	CGTACCCGCGCGC	.	29	4	28	0	.	90	T	43622597	C	T	43622597	3	4	43	1	0	0	0	0	1	0	0	0	8679	652	23	1	1973	1	LCMT2	15	43622597	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	2705769	43622597	58908795	126	6107											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75705145	75705145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SIN3A	NM_001145358	exon5	c.G715A	p.A239T	GCTGGGCAGGAGC	.	87	44	82	0	.	230	T	75705145	C	T	75705145	3	4	43	1	0	0	0	0	1	0	0	0	14325	710	25	3	3174	3	SIN3A	15	75705145	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	32082548	75705145	26826247	127	6108											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2138085	2138088	+	Frame_Shift_Del	DEL	TCGT	TCGT	-	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	TCGT	TCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TSC2	NM_000548	exon40	c.5105_5108del	p.1702_1703del	CCAAGATCGTGTC	.	34	12	54	0	.	1908	-	2138088	TCGT	-	2138085	7	5	43	1	0	1	0	1	0	0	0	0	16603	1435	50	0	5259	0	TSC2	16	2138085	Frame_Shift_Del	DEL	TCGT	TCGA-CC-A7IJ-01A-11D-A33Q-10		2138085	88216668	128	6109											
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu	37	16	11876180	11876180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZC3H7A	NM_014153	exon2	c.A31G	p.R11G	GCTGCCTTTTTCT	.	76	4	104	0	.	94	C	11876180	T	C	11876180	3	2	43	1	0	0	0	0	1	0	0	0	17569	1608	56	2	2972	2	ZC3H7A	16	11876180	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	9738095	11876180	78478573	129	6110											
GPRC5B	51704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19883202	19883202	+	Silent	SNP	C	C	T	rs199935784	alternate_allele	TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	GPRC5B	NM_016235	exon2	c.G966A	p.E322E	CACGTCCTCCTCG	.	42	19	62	0	C|0.999;G|0.000	523	T	19883202	C	T	19883202	2	4	43	1	0	0	0	0	0	0	0	1	6725	680	24	3		3	GPRC5B	16	19883202	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	8007022	19883202	70471551	130	6111											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58589731	58589731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CNOT1	NM_206999	exon20	c.G2561T	p.R854L	TATATTCGCTGGA	.	26	13	31	0	.	95	A	58589731	C	A	58589731	3	1	43	1	0	0	0	0	1	0	0	0	3617	884	31	1	4911	1	CNOT1	16	58589731	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	38706529	58589731	31765022	131	6112											
JPH3	57338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	87723913	87723913	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	JPH3	NM_020655	exon4	c.C1947A	p.G649G	CCGGGGCTTCGGG	.	79	52	100	0	.	92	A	87723913	C	A	87723913	2	1	43	1	0	0	0	0	0	0	0	1	7962	784	28	3		3	JPH3	16	87723913	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	29134182	87723913	2630840	132	6113											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon5	c.G469T	p.V157F	CGCGGACGCGGGT	.	63	39	75	0	.	70225	A	7578461	C	A	7578461	3	1	43	1	0	0	0	0	1	0	0	0	16378	536	19	1	829	1	TP53	17	7578461	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		7578461	73616749	133	6114											
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39622138	39622138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	KRT32	NM_002278	exon3	c.A595G	p.I199V	CATTGATGTCGGC	.	62	12	71	0	.	90	C	39622138	T	C	39622138	3	2	43	1	0	0	0	0	1	0	0	0	8468	1464	51	2	771	2	KRT32	17	39622138	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	32043677	39622138	41573072	134	6115											
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12277129	12277129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CIDEA	NM_001279	exon5	c.C520A	p.L174M	AGTCTGCTGCGGT	.	74	32	75	0	.	91	A	12277129	C	A	12277129	3	1	43	1	0	0	0	0	1	0	0	0	3425	796	28	3	682	3	CIDEA	18	12277129	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		12277129	65800119	135	6116											
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29126582	29126582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DSG2	NM_001943	exon15	c.G3233C	p.G1078A	TGTCTGGAGCTGG	.	103	15	95	0	.	563	C	29126582	G	C	29126582	3	2	43	1	0	0	0	0	1	0	0	0	4777	1174	41	4	3291	4	DSG2	18	29126582	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	16849453	29126582	48950666	136	6117											
SERPINB8	5271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	61645627	61645627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SERPINB8	NM_001031848	exon2	c.T85C	p.F29L	AACGTATTCTTCT	.	66	6	58	0	.	226	C	61645627	T	C	61645627	3	2	43	1	0	0	0	0	1	0	0	0	14107	1493	52	2	87	2	SERPINB8	18	61645627	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	32519045	61645627	16431621	137	6118											
CDH7	1005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63547825	63547825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CDH7	NM_004361	exon12	c.G2053T	p.D685Y	CGGAGGGATGTGA	.	162	29	186	1	.	94	T	63547825	G	T	63547825	3	4	43	1	0	0	0	0	1	0	0	0	3115	1174	41	3	2095	3	CDH7	18	63547825	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	1902198	63547825	14529423	138	6119											
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14991644	14991644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	OR7A17	NM_030901	exon1	c.C524T	p.P175L	AAGTGGGGGATTT	.	60	25	68	0	.	68	A	14991644	G	A	14991644	3	1	43	1	0	0	0	0	1	0	0	0	11215	1232	43	3	407	3	OR7A17	19	14991644	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10		14991644	44137339	139	6120											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15298796	15298796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	NOTCH3	NM_000435	exon10	c.G1502T	p.G501V	GTGGAGCCGCTGA	.	82	38	98	0	.	855	A	15298796	C	A	15298796	3	1	43	1	0	0	0	0	1	0	0	0	10550	739	26	3	5559	3	NOTCH3	19	15298796	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	307152	15298796	43830187	140	6121											
ZNF430	80264	broad.mit.edu;mdanderson.org	37	19	21216933	21216933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF430	NM_025189	exon4	c.G265C	p.E89Q	TGTCTAGAGCAAG	.	33	6	41	0	.	516	C	21216933	G	C	21216933	3	2	43	1	0	0	0	0	1	0	0	0	17901	943	33	4	279	4	ZNF430	19	21216933	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	5918137	21216933	37912050	141	6122											
FXYD3	5349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35614352	35614352	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FXYD3	NM_001136007	exon11	c.C426T	p.A142A	CTCAGCCCAAAGC	.	57	10	82	0	.	90	T	35614352	C	T	35614352	2	4	43	1	0	0	0	0	0	0	0	1	6119	610	22	3		3	FXYD3	19	35614352	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	14397419	35614352	23514631	142	6123											
CEACAM8	1088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	43098936	43098936	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CEACAM8	NM_001816	exon1	c.G45A	p.W15X	CCCCTGCCAGGGG	.	32	8	29	0	.	91	T	43098936	C	T	43098936	4	4	43	1	0	0	0	0	0	1	0	0	3198	740	26	3	1024	3	CEACAM8	19	43098936	Nonsense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	7484584	43098936	16030047	143	6124											
FUT1	2523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49253562	49253562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	FUT1	NM_000148	exon4	c.C977G	p.A326G	AAGTTGGCCAGGT	.	52	27	41	0	.	227	C	49253562	G	C	49253562	3	2	43	1	0	0	0	0	1	0	0	0	6101	1203	42	4	124	4	FUT1	19	49253562	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	6154626	49253562	9875421	144	6125											
ZNF586	54807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58290133	58290133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF586	NM_017652	exon3	c.G178A	p.G60R	CATGGAGGGGAAG	.	38	7	28	0	.	92	A	58290133	G	A	58290133	3	1	43	1	0	0	0	0	1	0	0	0	18016	1000	35	3	188	3	ZNF586	19	58290133	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	9036571	58290133	838850	145	6126											
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58453067	58453067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ZNF256	NM_005773	exon3	c.A1109G	p.Q370R	ACTCTCTGGTGTG	.	42	8	60	0	.	92	C	58453067	T	C	58453067	3	2	43	1	0	0	0	0	1	0	0	0	17796	1580	55	2	778	2	ZNF256	19	58453067	Missense_Mutation	SNP	T	TCGA-CC-A7IJ-01A-11D-A33Q-10	162934	58453067	675916	146	6127											
ANGPT4	51378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	869031	869031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	ANGPT4	NM_015985	exon3	c.T517C	p.S173P	TGGTGGACAGAAA	.	22	10	34	0	.	92	G	869031	A	G	869031	3	3	43	1	0	0	0	0	1	0	0	0	612	275	10	2	1022	2	ANGPT4	20	869031	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10		869031	62156489	147	6128											
MACROD2	140733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13983050	13983050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MACROD2	NM_080676	exon2	c.G163A	p.E55K	AATGATGGTAAGT	.	85	45	97	0	.	22	A	13983050	G	A	13983050	3	1	43	1	0	0	0	0	1	0	0	0	9146	1362	47	3	169	3	MACROD2	20	13983050	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	13114019	13983050	49042470	148	6129											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61522428	61522428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	DIDO1	NM_080797	exon15	c.G3425A	p.S1142N	CCACGGCTGCTGA	.	76	16	114	0	.	96	T	61522428	C	T	61522428	3	4	43	1	0	0	0	0	1	0	0	0	4522	797	28	3	3334	3	DIDO1	20	61522428	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	47539378	61522428	1503092	149	6130											
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62044867	62044867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	KCNQ2	NM_172107	exon15	c.G1699T	p.V567F	CGATGACGTCCAT	.	128	35	235	0	.	92	A	62044867	C	A	62044867	3	1	43	1	0	0	0	0	1	0	0	0	8083	536	19	1	931	1	KCNQ2	20	62044867	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	522439	62044867	980653	150	6131											
CLDN17	26285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31538834	31538834	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	CLDN17	NM_012131	exon1	c.T102G	p.A34A	AACAAAAGCTGAT	.	75	14	113	0	.	92	C	31538834	A	C	31538834	2	2	43	1	0	0	0	0	0	0	0	1	3478	59	3	5		5	CLDN17	21	31538834	Silent	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10		31538834	16591061	151	6132											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38461097	38461097	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TTC3	NM_001001894	exon5	c.339-2A>T	.	TCTTTAAGCAATT	.	67	22	103	0	.	590	T	38461097	A	T	38461097	5	4	43	1	0	0	0	0	0	0	1	0	16694	86	3	4	351	4	TTC3	21	38461097	Splice_Site	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10	6922263	38461097	9668798	152	6133											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44108091	44108091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	PDE9A	NM_001001570	exon3	c.G205A	p.A69T	ATGCCCGCGAATT	.	32	12	55	0	.	92	A	44108091	G	A	44108091	3	1	43	1	0	0	0	0	1	0	0	0	11655	1087	38	1	215	1	PDE9A	21	44108091	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	5646994	44108091	4021804	153	6134											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	44845966	44845966	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SIK1	NM_173354	exon2	c.G93A	p.R31R	CAGGGTCCGCTCG	.	45	15	67	0	.	346	T	44845966	C	T	44845966	2	4	43	1	0	0	0	0	0	0	0	1	14317	842	30	3		3	SIK1	21	44845966	Silent	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	737875	44845966	3283929	154	6135											
XPNPEP3	63929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41318489	41318489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	XPNPEP3	NM_022098	exon8	c.A1208C	p.K403T	TCATGAAGAACAT	.	71	6	53	0	.	68	C	41318489	A	C	41318489	3	2	43	1	0	0	0	0	1	0	0	0	17441	72	3	5	1238	5	XPNPEP3	22	41318489	Missense_Mutation	SNP	A	TCGA-CC-A7IJ-01A-11D-A33Q-10		41318489	9986077	155	6136											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42177763	42177763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	MEI1	NM_152513	exon24	c.G3001A	p.A1001T	GCAAAGGCAGATT	.	132	77	109	0	.	70	A	42177763	G	A	42177763	3	1	43	1	0	0	0	0	1	0	0	0	9465	1203	42	3	3095	3	MEI1	22	42177763	Missense_Mutation	SNP	G	TCGA-CC-A7IJ-01A-11D-A33Q-10	859274	42177763	9126803	156	6137											
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	43608598	43608598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	SCUBE1	NM_173050	exon17	c.G2054T	p.G685V	CACTGGCCTGAAA	.	37	13	44	0	.	93	A	43608598	C	A	43608598	3	1	43	1	0	0	0	0	1	0	0	0	13944	753	26	3	936	3	SCUBE1	22	43608598	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10	1430835	43608598	7695968	157	6138											
TYMP	1890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50967719	50967743	+	Frame_Shift_Del	DEL	GTCTCCTCCAGATCCATGCCCCGAA	GTCTCCTCCAGATCCATGCCCCGAA	-	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	GTCTCCTCCAGATCCATGCCCCGAA	GTCTCCTCCAGATCCATGCCCCGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	TYMP	NM_001257989	exon3	c.239_263del	p.80_88del	ACCGAGGTCTCCT	.	49	20	69	0	.	23	-	50967743	GTCTCCTCCAGATCCATGCCCCGAA	-	50967719	7	5	43	1	0	1	0	1	0	0	0	0	16808	1261	44	0	1217	0	TYMP	22	50967719	Frame_Shift_Del	DEL	GTCTCCTCCAGATCCATGCCCCGAA	TCGA-CC-A7IJ-01A-11D-A33Q-10	7359121	50967719	336847	158	6139											
UPRT	139596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	74494412	74494412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IJ-01A-11D-A33Q-10	TCGA-CC-A7IJ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4daabef7-38d1-4a34-882c-1a78de6fe252	0d941ca8-539e-4a09-827d-7089b997f42e	.	UPRT	NM_145052	exon1	c.C323T	p.A108V	TCGGGGCGCAGCT	.	128	88	98	0	.	130	T	74494412	C	T	74494412	3	4	43	1	0	0	0	0	1	0	0	0	17011	768	27	1	325	1	UPRT	23	74494412	Missense_Mutation	SNP	C	TCGA-CC-A7IJ-01A-11D-A33Q-10		74494412	80776148	159	6140											
MXRA8	54587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1290242	1290242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MXRA8	NM_032348	exon5	c.C769A	p.L257M	TACGCAGTGAGAA	.	118	49	111	0	.	90	T	1290242	G	T	1290242	3	4	44	1	0	0	0	0	1	0	0	0	10005	1020	36	3	583	3	MXRA8	1	1290242	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10		1290242	247960379	1	6141											
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	6206301	6206301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHD5	NM_015557	exon11	c.G1773A	p.W591X	CATCATCCACTCT	.	73	15	57	0	.	719	T	6206301	C	T	6206301	4	4	44	1	0	0	0	0	0	1	0	0	3328	856	30	3	4215	3	CHD5	1	6206301	Nonsense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	4916059	6206301	243044320	2	6142											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	14108238	14108238	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRDM2	NM_015866	exon8	c.A3948T	p.T1316T	TGTGACAGCCACA	.	83	38	79	0	.	116	T	14108238	A	T	14108238	2	4	44	1	0	0	0	0	0	0	0	1	12458	175	7	4		4	PRDM2	1	14108238	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	7901937	14108238	235142383	3	6143											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22895781	22895781	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHA8	NM_020526	exon2	c.95-1G>A	.	TTTACAGTGAATT	.	55	11	62	0	.	1380	A	22895781	G	A	22895781	5	1	44	1	0	0	0	0	0	0	1	0	5173	1043	36	3	100	3	EPHA8	1	22895781	Splice_Site	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	8787543	22895781	226354840	4	6144											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23762387	23762387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASAP3	NM_017707	exon17	c.A1706C	p.N569T	TGCCCATTGGCAA	.	117	21	114	0	.	155	G	23762387	T	G	23762387	3	3	44	1	0	0	0	0	1	0	0	0	1012	1493	52	5	1041	5	ASAP3	1	23762387	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	866606	23762387	225488234	5	6145											
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27720703	27720703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR3	NM_005281	exon2	c.G401C	p.R134P	TCGACCGCTACCT	.	31	13	39	0	.	91	C	27720703	G	C	27720703	3	2	44	1	0	0	0	0	1	0	0	0	6686	1087	38	4	403	4	GPR3	1	27720703	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	3958316	27720703	221529918	6	6146											
SPOCD1	90853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32265012	32265012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPOCD1	NM_144569	exon7	c.C1858A	p.L620I	TCCATAGTACCTC	.	238	110	191	0	.	158	T	32265012	G	T	32265012	3	4	44	1	0	0	0	0	1	0	0	0	15077	1020	36	3	1832	3	SPOCD1	1	32265012	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	4544309	32265012	216985609	7	6147											
SMAP2	64744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40882562	40882562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SMAP2	NM_022733	exon9	c.A958G	p.M320V	GTAGGCATGGTTG	.	276	40	213	0	.	68	G	40882562	A	G	40882562	3	3	44	1	0	0	0	0	1	0	0	0	14767	217	8	2	992	2	SMAP2	1	40882562	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	8617550	40882562	208368059	8	6148											
CCDC30	728621	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	43110399	43110399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC30	NM_001080850	exon13	c.A1811T	p.Q604L	AATTACAGGAAAA	.	30	9	21	0	.	90	T	43110399	A	T	43110399	3	4	44	1	0	0	0	0	1	0	0	0	2805	188	7	4	1857	4	CCDC30	1	43110399	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2227837	43110399	206140222	9	6149											
ST3GAL3	6487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44395833	44395833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ST3GAL3	NM_001270463	exon8	c.A584G	p.K195R	AGAGAAAGAGTTT	.	61	15	57	0	.	93	G	44395833	A	G	44395833	3	3	44	1	0	0	0	0	1	0	0	0	15215	73	3	2	1321	2	ST3GAL3	1	44395833	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1285434	44395833	204854788	10	6150											
DMRTB1	63948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53932266	53932266	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMRTB1	NM_033067	exon4	c.962-2A>T	.	CTTCACAGATGAC	.	233	112	209	0	.	92	T	53932266	A	T	53932266	5	4	44	1	0	0	0	0	0	0	1	0	4590	202	7	4	974	4	DMRTB1	1	53932266	Splice_Site	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	9536433	53932266	195318355	11	6151											
YIPF1	54432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54332055	54332055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	YIPF1	NM_018982	exon9	c.A649G	p.I217V	ACAGTATCTGAAA	.	313	136	282	0	.	154	C	54332055	T	C	54332055	3	2	44	1	0	0	0	0	1	0	0	0	17474	1449	50	2	279	2	YIPF1	1	54332055	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	399789	54332055	194918566	12	6152											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79411969	79411969	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELTD1	NM_022159	exon3	c.C315A	p.T105T	ACAGACGGTTCCA	.	128	54	101	0	.	24	T	79411969	G	T	79411969	2	4	44	1	0	0	0	0	0	0	0	1	5084	1103	39	1		1	ELTD1	1	79411969	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	25079914	79411969	169838652	13	6153											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94543350	94543350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCA4	NM_000350	exon11	c.A1450G	p.K484E	GGCCCTTGTAGAG	.	130	37	126	0	.	162	C	94543350	T	C	94543350	3	2	44	1	0	0	0	0	1	0	0	0	34	1821	63	2	5531	2	ABCA4	1	94543350	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	15131381	94543350	154707271	14	6154											
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97271990	97271990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTBP2	NM_021190	exon10	c.A1060G	p.S354G	CCCCAAAGTCTGT	.	65	23	59	0	.	90	G	97271990	A	G	97271990	3	3	44	1	0	0	0	0	1	0	0	0	12726	72	3	2	1098	2	PTBP2	1	97271990	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2728640	97271990	151978631	15	6155											
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	102269846	102269846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OLFM3	NM_058170	exon6	c.T1325A	p.V442E	AACAGCACCTGGT	.	86	33	67	0	.	93	T	102269846	A	T	102269846	3	4	44	1	0	0	0	0	1	0	0	0	10854	159	6	4	55	4	OLFM3	1	102269846	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	4997856	102269846	146980775	16	6156											
SLC25A24	29957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	108742645	108742645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC25A24	NM_013386	exon1	c.T116A	p.V39E	ATGTCCACCACTC	.	108	63	76	0	.	91	T	108742645	A	T	108742645	3	4	44	1	0	0	0	0	1	0	0	0	14487	159	6	4	1487	4	SLC25A24	1	108742645	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	6472799	108742645	140507976	17	6157											
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114240970	114240970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PHTF1	NM_006608	exon17	c.A2182T	p.N728Y	AGGGATTCATTGT	.	70	18	67	0	.	91	A	114240970	T	A	114240970	3	1	44	1	0	0	0	0	1	0	0	0	11862	1783	62	4	114	4	PHTF1	1	114240970	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5498325	114240970	135009651	18	6158											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117142910	117142910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGSF3	NM_001542	exon8	c.C1742G	p.S581C	TCAAAGGAGTCGC	.	44	19	46	0	.	92	C	117142910	G	C	117142910	3	2	44	1	0	0	0	0	1	0	0	0	7601	1174	41	4	1922	4	IGSF3	1	117142910	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	2901940	117142910	132107711	19	6159											
SF3B4	10262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149898428	149898428	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SF3B4	NM_005850	exon3	c.C546T	p.S182S	ACCCTTGGAGTCC	.	135	25	89	0	.	91	A	149898428	G	A	149898428	2	1	44	1	0	0	0	0	0	0	0	1	14153	1335	47	3		3	SF3B4	1	149898428	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	32755518	149898428	99352193	20	6160											
MRPS21	54460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150266814	150266814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MRPS21	NM_018997	exon1	c.A28T	p.R10W	ATCGCCAGGACTG	.	309	27	196	0	.	90	T	150266814	A	T	150266814	3	4	44	1	0	0	0	0	1	0	0	0	9832	179	7	4	30	4	MRPS21	1	150266814	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	368386	150266814	98983807	21	6161											
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150676627	150676627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HORMAD1	NM_032132	exon12	c.915delA	p.K305fs	ACTTTCTTTAGAC	.	196	28	181	0	.	92	-	150676627	T	-	150676627	7	5	44	1	0	1	0	1	0	0	0	0	7286	1606	56	0	285	0	HORMAD1	1	150676627	Frame_Shift_Del	DEL	T	TCGA-CC-A7IK-01A-12D-A33Q-10	409813	150676627	98573994	22	6162											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152284916	152284917	+	Missense_Mutation	DNP	CT	CT	GA	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	p.V816L	GTCTTACTCCAGT	.	148	37	124	0	.	.	GA	152284917	CT	GA	152284916	3	3	44	1	0	0	0	0	1	0	0	0	5922	565	20	4	9743	4	FLG	1	152284916	Missense_Mutation	DNP	CT	TCGA-CC-A7IK-01A-12D-A33Q-10	1608289	152284916	96965705	23	6163											
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152326656	152326656	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLG2	NM_001014342	exon3	c.C3606A	p.S1202S	TCCAGTGGACTGA	.	124	26	96	0	.	151	T	152326656	G	T	152326656	2	4	44	1	0	0	0	0	0	0	0	1	5923	1335	47	3		3	FLG2	1	152326656	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	41740	152326656	96923965	24	6164											
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152944448	152944448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPRR4	NM_173080	exon2	c.C82T	p.Q28X	CCTTGTCAGCCAC	.	238	69	174	0	.	68	T	152944448	C	T	152944448	4	4	44	1	0	0	0	0	0	1	0	0	15103	827	29	3	84	3	SPRR4	1	152944448	Nonsense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	617792	152944448	96306173	25	6165											
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154296109	154296109	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AQP10	NM_080429	exon5	c.G534C	p.L178L	CATCCTGGACAGA	.	114	16	98	0	.	90	C	154296109	G	C	154296109	2	2	44	1	0	0	0	0	0	0	0	1	822	1335	47	4		4	AQP10	1	154296109	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1351661	154296109	94954512	26	6166											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154569745	154569745	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAR	NM_015840	exon6	c.1935-2A>G	.	GGAACCTGACAGG	.	79	36	63	0	.	157	C	154569745	T	C	154569745	5	2	44	1	0	0	0	0	0	0	1	0	281	1594	55	2	1791	2	ADAR	1	154569745	Splice_Site	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	273636	154569745	94680876	27	6167											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160098468	160098468	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP1A2	NM_000702	exon9	c.C1044A	p.R348R	CAAGCGCATGGCA	.	154	31	104	0	.	518	A	160098468	C	A	160098468	2	1	44	1	0	0	0	0	0	0	0	1	1129	697	25	3		3	ATP1A2	1	160098468	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	5528723	160098468	89152153	28	6168											
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167659345	167659345	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	RCSD1,NS,carcinoma,+2	RCSD1	NM_052862	exon4	c.T258A	p.I86I	TCTGATTGAGAAG	.	114	39	98	0	.	517	A	167659345	T	A	167659345	2	1	44	1	0	0	0	0	0	0	0	1	13185	1800	63	4		4	RCSD1	1	167659345	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	7560877	167659345	81591276	29	6169											
GPR161	23432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168054803	168054803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR161	NM_001267609	exon7	c.A1616C	p.E539A	CCTTCTTCGATGC	.	139	67	85	0	.	90	G	168054803	T	G	168054803	3	3	44	1	0	0	0	0	1	0	0	0	6665	1783	62	5	37	5	GPR161	1	168054803	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	395458	168054803	81195818	30	6170											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	177250137	177250137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM5B	NM_021165	exon8	c.A1825C	p.S609R	GAGGGCAGCTTTC	.	84	13	65	0	.	28	C	177250137	A	C	177250137	3	2	44	1	0	0	0	0	1	0	0	0	5593	188	7	5	1851	5	FAM5B	1	177250137	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	9195334	177250137	72000484	31	6171											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197102525	197102525	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASPM	NM_001206846	exon6	c.A2374T	p.R792W	ACCGCCTAGCTTC	.	175	62	115	0	.	615	A	197102525	T	A	197102525	3	1	44	1	0	0	0	0	1	0	0	0	1056	1521	53	4	8151	4	ASPM	1	197102525	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	19852388	197102525	52148096	32	6172											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201196213	201196213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGFN1	NM_001164586	exon23	c.G10990T	p.D3664Y	AGCACTGACCTGC	.	225	72	171	0	.	71	T	201196213	G	T	201196213	3	4	44	1	0	0	0	0	1	0	0	0	7590	1290	45	3	11076	3	IGFN1	1	201196213	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	4093688	201196213	48054408	33	6173											
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201757764	201757764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NAV1	NM_020443	exon10	c.A3164G	p.D1055G	CGGACGATGGTGA	.	48	12	36	0	.	228	G	201757764	A	G	201757764	3	3	44	1	0	0	0	0	1	0	0	0	10183	333	12	2	3259	2	NAV1	1	201757764	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	561551	201757764	47492857	34	6174											
TMEM183B	653659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202987649	202987649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001079809	exon6	c.A749C	p.Q250P	ACAGACAGGAACC	.	302	124	250	0	.	.	C	202987649	A	C	202987649	3	2	44	1	0	0	0	0	1	0	0	0	16100	188	7	5	771	5	TMEM183B	1	202987649	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1229885	202987649	46262972	35	6175											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207649619	207649620	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	p.N920H	TAACGGGAACCAT	.	115	61	79	0	.	.	TC	207649620	GA	TC	207649619	3	4	44	1	0	0	0	0	1	0	0	0	3842	1161	41	3	2815	3	CR2	1	207649619	Missense_Mutation	DNP	GA	TCGA-CC-A7IK-01A-12D-A33Q-10	4661970	207649619	41601002	36	6176											
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212558622	212558622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM206	NM_001198862	exon5	c.G672T	p.Q224H	CACAGTCTGATTG	.	313	50	225	0	.	153	A	212558622	C	A	212558622	3	1	44	1	0	0	0	0	1	0	0	0	16128	912	32	3	583	3	TMEM206	1	212558622	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	4909003	212558622	36691999	37	6177											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214537999	214537999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPN14	NM_005401	exon18	c.G3291T	p.Q1097H	GACCGACTGGATC	.	227	36	146	0	.	290	A	214537999	C	A	214537999	3	1	44	1	0	0	0	0	1	0	0	0	12783	564	20	3	280	3	PTPN14	1	214537999	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1979377	214537999	34712622	38	6178											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228550304	228550304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OBSCN	NM_001271223	exon91	c.A21560C	p.E7187A	ACCAGGAGGTCAC	.	278	103	194	0	.	403	C	228550304	A	C	228550304	3	2	44	1	0	0	0	0	1	0	0	0	10812	304	11	5	20213	5	OBSCN	1	228550304	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	14012305	228550304	20700317	39	6179											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245850812	245850812	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KIF26B	NM_018012	exon12	c.C4527A	p.V1509V	GAGGGTCGTGGAT	.	213	117	157	0	.	25	A	245850812	C	A	245850812	2	1	44	1	0	0	0	0	0	0	0	1	8295	871	31	1		1	KIF26B	1	245850812	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	17300508	245850812	3399809	40	6180											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27455440	27455440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CAD	NM_004341	exon18	c.A2770G	p.T924A	TGGGGCACCACCC	.	164	82	151	0	.	295	G	27455440	A	G	27455440	3	3	44	1	0	0	0	0	1	0	0	0	2565	159	6	2	2840	2	CAD	2	27455440	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		27455440	215743933	41	6181											
SPAST	6683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32314626	32314626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPAST	NM_199436	exon3	c.A538G	p.K180E	CAAGCTAAAATGA	.	103	26	81	0	.	153	G	32314626	A	G	32314626	3	3	44	1	0	0	0	0	1	0	0	0	14996	363	13	2	548	2	SPAST	2	32314626	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	4859186	32314626	210884747	42	6182											
FER1L5	90342	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	97335890	97335890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FER1L5	NM_001113382	exon17	c.A1382T	p.Y461F	TAGCTTATCGAGG	.	134	35	125	0	.	23	T	97335890	A	T	97335890	3	4	44	1	0	0	0	0	1	0	0	0	5814	449	16	4	1448	4	FER1L5	2	97335890	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	65021264	97335890	145863483	43	6183											
TMEM131	23505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98429012	98429012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM131	NM_015348	exon17	c.A1735G	p.I579V	TTTTTATAGCCAA	.	246	52	191	0	.	74	C	98429012	T	C	98429012	3	2	44	1	0	0	0	0	1	0	0	0	16041	1406	49	2	4016	2	TMEM131	2	98429012	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1093122	98429012	144770361	44	6184											
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100058804	100058804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	REV1	NM_001037872	exon5	c.A478G	p.I160V	TGGCTATATTGCT	.	141	33	100	0	.	92	C	100058804	T	C	100058804	3	2	44	1	0	0	0	0	1	0	0	0	13239	1406	49	2	3353	2	REV1	2	100058804	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1629792	100058804	143140569	45	6185											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105914979	105914979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TGFBRAP1	NM_004257	exon3	c.A872C	p.Q291P	AAGTCCTGTAGGA	.	88	23	83	0	.	91	G	105914979	T	G	105914979	3	3	44	1	0	0	0	0	1	0	0	0	15821	1580	55	5	1750	5	TGFBRAP1	2	105914979	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5856175	105914979	137284394	46	6186											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	141459798	141459798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRP1B	NM_018557	exon39	c.G6214T	p.G2072X	TCCCTCCAGTCTC	.	263	60	168	0	.	311	A	141459798	C	A	141459798	4	1	44	1	0	0	0	0	0	1	0	0	8955	603	21	3	7797	3	LRP1B	2	141459798	Nonsense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	35544819	141459798	101739575	47	6187											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152512686	152512686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NEB	NM_004543	exon49	c.T6476C	p.M2159T	CGATTCATATTCC	.	108	20	95	0	.	145	G	152512686	A	G	152512686	3	3	44	1	0	0	0	0	1	0	0	0	10302	217	8	2	19746	2	NEB	2	152512686	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	11052888	152512686	90686687	48	6188											
STK39	27347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169020389	169020389	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK39	NM_013233	exon4	c.T432A	p.G144G	CATTGAACCTAAG	.	91	16	83	0	.	546	T	169020389	A	T	169020389	2	4	44	1	0	0	0	0	0	0	0	1	15304	57	2	4		4	STK39	2	169020389	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	16507703	169020389	74178984	49	6189											
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178769916	178769916	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PDE11A	NM_001077197	exon5	c.322-2A>T	.	ATAACCTGGGACA	.	57	14	40	0	.	93	A	178769916	T	A	178769916	5	1	44	1	0	0	0	0	0	0	1	0	11631	1594	55	4	1803	4	PDE11A	2	178769916	Splice_Site	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	9749527	178769916	64429457	50	6190											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179642164	179642164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TTN	NM_001267550	exon26	c.T4628A	p.V1543E	AAAATCACTGAAA	.	52	34	48	0	.	636	T	179642164	A	T	179642164	3	4	44	1	0	0	0	0	1	0	0	0	16732	159	6	4	106708	4	TTN	2	179642164	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	872248	179642164	63557209	51	6191											
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191362167	191362167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MFSD6	NM_017694	exon7	c.A1894G	p.K632E	CCAGACAAGACAA	.	63	14	40	0	.	92	G	191362167	A	G	191362167	3	3	44	1	0	0	0	0	1	0	0	0	9535	131	5	2	1912	2	MFSD6	2	191362167	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	11720003	191362167	51837206	52	6192											
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222301134	222301134	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHA4	NM_004438	exon13	c.A2331T	p.A777A	GTAAGCTGCTTCC	.	93	23	84	0	.	1441	A	222301134	T	A	222301134	2	1	44	1	0	0	0	0	0	0	0	1	5169	1567	55	4		4	EPHA4	2	222301134	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	30938967	222301134	20898239	53	6193											
ALPP	250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233243696	233243696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ALPP	NM_001632	exon2	c.C92A	p.P31Q	AGAACCCGGACTT	.	109	16	77	0	.	91	A	233243696	C	A	233243696	3	1	44	1	0	0	0	0	1	0	0	0	548	652	23	1	98	1	ALPP	2	233243696	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	10942562	233243696	9955677	54	6194											
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	235951205	235951205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SH3BP4	NM_014521	exon4	c.G1792T	p.E598X	GACCAGGAGGCCA	.	130	94	116	0	.	94	T	235951205	G	T	235951205	4	4	44	1	0	0	0	0	0	1	0	0	14246	1175	41	3	1798	3	SH3BP4	2	235951205	Nonsense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	2707509	235951205	7248168	55	6195											
FARP2	9855	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242380934	242380934	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FARP2	NM_014808	exon13	c.C1374A	p.A458A	ATCGGCCCAGCCC	.	77	41	83	1	.	93	A	242380934	C	A	242380934	2	1	44	1	0	0	0	0	0	0	0	1	5677	610	22	3		3	FARP2	2	242380934	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	6429729	242380934	818439	56	6196											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10382000	10382000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP2B2	NM_001001331	exon21	c.A3163T	p.S1055C	AGCAGCTGAATGG	.	73	16	69	0	.	95	A	10382000	T	A	10382000	3	1	44	1	0	0	0	0	1	0	0	0	1140	1580	55	4	580	4	ATP2B2	3	10382000	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		10382000	187640430	57	6197											
UBP1	7342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33441756	33441756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	UBP1	NM_014517	exon11	c.A1105G	p.T369A	GGATCGTAGCTGA	.	54	6	60	0	.	537	C	33441756	T	C	33441756	3	2	44	1	0	0	0	0	1	0	0	0	16892	1638	57	2	541	2	UBP1	3	33441756	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	23059756	33441756	164580674	58	6198											
STAC	6769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36484900	36484900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STAC	NM_003149	exon2	c.A156T	p.L52F	GAGTTTACGGAGC	.	170	37	173	1	.	94	T	36484900	A	T	36484900	3	4	44	1	0	0	0	0	1	0	0	0	15238	388	14	4	162	4	STAC	3	36484900	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	3043144	36484900	161537530	59	6199											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	167	34	160	0	.	24361	T	41266098	A	T	41266098	3	4	44	1	0	0	0	0	1	0	0	0	4016	275	10	4	101	4	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	4781198	41266098	156756332	60	6200											
CDCP1	64866	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	45187699	45187699	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CDCP1	NM_178181	exon1	c.A81T	p.A27A	CTCACCTGCCCCG	.	83	14	89	0	.	117	A	45187699	T	A	45187699	2	1	44	1	0	0	0	0	0	0	0	1	3093	1594	55	4		4	CDCP1	3	45187699	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	3921601	45187699	152834731	61	6201											
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48455150	48455150	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLXNB1	NM_001130082	exon23	c.A4464T	p.A1488A	CTGGGCTGCCACA	.	74	14	75	0	.	293	A	48455150	T	A	48455150	2	1	44	1	0	0	0	0	0	0	0	1	12123	1567	55	4		4	PLXNB1	3	48455150	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	3267451	48455150	149567280	62	6202											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48689876	48689876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CELSR3	NM_001407	exon11	c.C5745A	p.C1915X	CTGGATGCAGCCA	.	85	11	109	0	.	523	T	48689876	G	T	48689876	4	4	44	1	0	0	0	0	0	1	0	0	3223	1311	46	3	4293	3	CELSR3	3	48689876	Nonsense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	234726	48689876	149332554	63	6203											
QRICH1	54870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49095208	49095208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	QRICH1	NM_198880	exon3	c.A425T	p.Q142L	GGTGCCTGGCCTT	.	75	18	76	0	.	91	A	49095208	T	A	49095208	3	1	44	1	0	0	0	0	1	0	0	0	12879	1580	55	4	1937	4	QRICH1	3	49095208	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	405332	49095208	148927222	64	6204											
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49149350	49149350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	USP19	NM_001199161	exon20	c.A2897T	p.Y966F	CGGGCATAGCCCT	.	59	18	76	1	.	663	A	49149350	T	A	49149350	3	1	44	1	0	0	0	0	1	0	0	0	17047	1406	49	4	1400	4	USP19	3	49149350	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	54142	49149350	148873080	65	6205											
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49166551	49166551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LAMB2	NM_002292	exon13	c.C1633G	p.Q545E	TGTGCTGGCGGCA	.	53	26	45	0	.	93	C	49166551	G	C	49166551	3	2	44	1	0	0	0	0	1	0	0	0	8611	1357	47	4	3843	4	LAMB2	3	49166551	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	17201	49166551	148855879	66	6206											
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49698355	49698355	+	Missense_Mutation	SNP	C	C	G	rs141830771	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BSN	NM_003458	exon6	c.C9077G	p.T3026S	GCTGCACCACTCC	.	49	13	46	0	C|1.000;T|0.000	97	G	49698355	C	G	49698355	3	3	44	1	0	0	0	0	1	0	0	0	1530	507	18	4	9099	4	BSN	3	49698355	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	531804	49698355	148324075	67	6207											
CDHR4	389118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49832413	49832413	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001007540	exon9	c.T1152A	p.P384P	GCTGGCAGGGTTG	.	139	34	121	0	.	.	T	49832413	A	T	49832413	2	4	44	1	0	0	0	0	0	0	0	1	3121	175	7	4		4	CDHR4	3	49832413	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	134058	49832413	148190017	68	6208											
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	54952542	54952542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRTM1	NM_020678	exon3	c.A982G	p.T328A	CATTGGTTTGAGC	.	141	38	145	0	.	90	C	54952542	T	C	54952542	3	2	44	1	0	0	0	0	1	0	0	0	9044	1725	60	2	59	2	LRTM1	3	54952542	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5120129	54952542	143069888	69	6209											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57394214	57394214	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNAH12	NM_178504	exon40	c.G6012T	p.L2004L	AGCAATCAGCTCT	.	117	67	112	0	.	47	A	57394214	C	A	57394214	2	1	44	1	0	0	0	0	0	0	0	1	4600	813	29	3		3	DNAH12	3	57394214	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	2441672	57394214	140628216	70	6210											
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	70008478	70008478	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MITF	NM_198159	exon9	c.A1068G	p.R356R	TATCCGAAAGTTG	.	216	32	216	0	.	524	G	70008478	A	G	70008478	2	3	44	1	0	0	0	0	0	0	0	1	9596	233	9	2		2	MITF	3	70008478	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	12614264	70008478	128013952	71	6211											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77666666	77666666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ROBO2	NM_002942	exon22	c.A3296G	p.Y1099C	TCAGCTATGACAG	.	63	44	64	0	.	328	G	77666666	A	G	77666666	3	3	44	1	0	0	0	0	1	0	0	0	13514	449	16	2	3384	2	ROBO2	3	77666666	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	7658188	77666666	120355764	72	6212											
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	100948247	100948247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPG2	NM_016247	exon17	c.G3610T	p.E1204X	TGCTCTCATACAT	.	74	9	91	0	.	93	A	100948247	C	A	100948247	4	1	44	1	0	0	0	0	0	1	0	0	7729	835	29	3	127	3	IMPG2	3	100948247	Nonsense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	23281581	100948247	97074183	73	6213											
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100976471	100976471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPG2	NM_016247	exon10	c.G1055T	p.S352I	AAGTTACTGATTG	.	92	60	92	0	.	93	A	100976471	C	A	100976471	3	1	44	1	0	0	0	0	1	0	0	0	7729	565	20	3	2710	3	IMPG2	3	100976471	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	28224	100976471	97045959	74	6214											
BTLA	151888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	112185077	112185077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BTLA	NM_181780	exon5	c.G748T	p.E250X	TGTTTTCTTCCAG	.	74	21	63	0	.	90	A	112185077	C	A	112185077	4	1	44	1	0	0	0	0	0	1	0	0	1558	922	32	3	125	3	BTLA	3	112185077	Nonsense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	11208606	112185077	85837353	75	6215											
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112736436	112736436	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C3orf17	NM_015412	exon2	c.A120T	p.A40A	TACAGCTGCAATG	.	99	42	93	0	.	90	A	112736436	T	A	112736436	2	1	44	1	0	0	0	0	0	0	0	1	2210	1567	55	4		4	C3orf17	3	112736436	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	551359	112736436	85285994	76	6216											
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113004363	113004363	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BOC	NM_033254	exon19	c.C3108T	p.A1036A	GAGAGCCCCCGAC	.	112	69	95	0	.	157	T	113004363	C	T	113004363	2	4	44	1	0	0	0	0	0	0	0	1	1481	610	22	3		3	BOC	3	113004363	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	267927	113004363	85018067	77	6217											
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281142	140281142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLSTN2	NM_022131	exon13	c.C2204A	p.S735Y	GCTACTCCATCTA	.	35	20	33	0	.	157	A	140281142	C	A	140281142	3	1	44	1	0	0	0	0	1	0	0	0	3562	855	30	3	2254	3	CLSTN2	3	140281142	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	27276779	140281142	57741288	78	6218											
EPHB3	2049	broad.mit.edu;bcgsc.ca	37	3	184298848	184298848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHB3	NM_004443	exon14	c.T2627G	p.V876G	GCTGGGTGCGGGA	.	75	6	96	1	.	1455	G	184298848	T	G	184298848	3	3	44	1	0	0	0	0	1	0	0	0	5176	1696	59	5	2681	5	EPHB3	3	184298848	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	44017706	184298848	13723582	79	6219											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195507996	195507996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C10455A	p.H3485Q	GGTGGTGTGACCT	.	133	15	160	0	.	90	T	195507996	G	T	195507996	3	4	44	1	0	0	0	0	1	0	0	0	9978	1368	48	3		3	MUC4	3	195507996	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	11209148	195507996	2514434	80	6220											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195509863	195509863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C8588A	p.T2863N	AGAGAGGTGGCGT	.	168	12	197	0	.	90	T	195509863	G	T	195509863	3	4	44	1	0	0	0	0	1	0	0	0	9978	1261	44	3		3	MUC4	3	195509863	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1867	195509863	2512567	81	6221											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195515685	195515685	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C2766A	p.I922I	CAGGCTGATAGTG	.	108	27	135	0	.	90	T	195515685	G	T	195515685	2	4	44	1	0	0	0	0	0	0	0	1	9978	1280	45	3		3	MUC4	3	195515685	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	5822	195515685	2506745	82	6222											
JAKMIP1	152789	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6058425	6058425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JAKMIP1	NM_001099433	exon12	c.A1706T	p.K569M	CGCACCTTTTCCA	.	12	6	36	0	.	292	A	6058425	T	A	6058425	3	1	44	1	0	0	0	0	1	0	0	0	7940	1623	56	4	904	4	JAKMIP1	4	6058425	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		6058425	185095851	83	6223											
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6288867	6288867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	WFS1,brain,glioma,-2	WFS1	NM_001145853	exon3	c.A280T	p.R94W	CTGGAGAGGGCCA	.	32	16	108	0	.	91	T	6288867	A	T	6288867	3	4	44	1	0	0	0	0	1	0	0	0	17357	295	11	4	286	4	WFS1	4	6288867	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	230442	6288867	184865409	84	6224											
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39313096	39313096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RFC1	NM_002913	exon12	c.A1457G	p.K486R	TTGGATTTCTTGC	.	38	7	50	0	.	230	C	39313096	T	C	39313096	3	2	44	1	0	0	0	0	1	0	0	0	13244	1841	64	2	2042	2	RFC1	4	39313096	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	33024229	39313096	151841180	85	6225											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46967019	46967019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GABRA4	NM_000809	exon8	c.C1102T	p.Q368X	CTCTCTGCACTGG	.	72	16	138	0	.	156	A	46967019	G	A	46967019	4	1	44	1	0	0	0	0	0	1	0	0	6163	1328	46	3	570	3	GABRA4	4	46967019	Nonsense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	7653923	46967019	144187257	86	6226											
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52943036	52943036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPATA18	NM_145263	exon7	c.A850T	p.R284W	AAGGTCAGGAGAC	.	129	67	264	0	.	72	T	52943036	A	T	52943036	3	4	44	1	0	0	0	0	1	0	0	0	15002	179	7	4	876	4	SPATA18	4	52943036	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5976017	52943036	138211240	87	6227											
SULT1B1	27284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70620914	70620914	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SULT1B1	NM_014465	exon2	c.C22T	p.L8L	TTCGCAGAATATC	.	74	38	125	0	.	90	A	70620914	G	A	70620914	2	1	44	1	0	0	0	0	0	0	0	1	15373	933	33	3		3	SULT1B1	4	70620914	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	17677878	70620914	120533362	88	6228											
SEC31A	22872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83793196	83793196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SEC31A	NM_001077206	exon7	c.A683C	p.Q228P	ACCATCTGAGTAG	.	108	41	212	0	.	268	G	83793196	T	G	83793196	3	3	44	1	0	0	0	0	1	0	0	0	13998	1580	55	5	3063	5	SEC31A	4	83793196	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	13172282	83793196	107361080	89	6229											
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83838969	83838969	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	THAP9	NM_024672	exon5	c.T1604A	p.L535Q	GGCCTCTGTTGCC	.	33	16	70	0	.	156	A	83838969	T	A	83838969	3	1	44	1	0	0	0	0	1	0	0	0	15848	1580	55	4	1622	4	THAP9	4	83838969	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	45773	83838969	107315307	90	6230											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85623579	85623579	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WDFY3	NM_014991	exon56	c.A8523C	p.A2841A	TACATCTGCCATA	.	84	43	200	0	.	93	G	85623579	T	G	85623579	2	3	44	1	0	0	0	0	0	0	0	1	17267	1567	55	5		5	WDFY3	4	85623579	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1784610	85623579	105530697	91	6231											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123185451	123185451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KIAA1109	NM_015312	exon43	c.A7186C	p.N2396H	GATTTCAACACTG	.	60	16	130	0	.	80	C	123185451	A	C	123185451	3	2	44	1	0	0	0	0	1	0	0	0	8208	130	5	5	7356	5	KIAA1109	4	123185451	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	37561872	123185451	67968825	92	6232											
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155507589	155507589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FGA	NM_000508	exon5	c.C992A	p.T331N	CTTCCAGTACTTC	.	75	16	136	0	.	93	T	155507589	G	T	155507589	3	4	44	1	0	0	0	0	1	0	0	0	5830	1029	36	3	1660	3	FGA	4	155507589	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	32322138	155507589	35646687	93	6233											
NKD2	85409	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1036382	1036382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NKD2	NM_001271082	exon9	c.A670T	p.T224S	CCCAGTACTGACC	.	54	25	67	1	.	226	T	1036382	A	T	1036382	3	4	44	1	0	0	0	0	1	0	0	0	10442	391	14	4	704	4	NKD2	5	1036382	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		1036382	179878878	94	6234											
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40763061	40763061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRKAA1	NM_206907	exon10	c.A1544G	p.Y515C	GATCGATAGTTGC	.	101	27	117	0	.	792	C	40763061	T	C	40763061	3	2	44	1	0	0	0	0	1	0	0	0	12493	1406	49	2	184	2	PRKAA1	5	40763061	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	39726679	40763061	140152199	95	6235											
MARVELD2	153562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68715680	68715680	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MARVELD2	NM_001244734	exon2	c.G468A	p.R156R	TCCCCGGGATCCC	.	105	39	106	0	.	22	A	68715680	G	A	68715680	2	1	44	1	0	0	0	0	0	0	0	1	9318	1219	43	3		3	MARVELD2	5	68715680	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	27952619	68715680	112199580	96	6236											
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95236690	95236690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELL2	NM_012081	exon6	c.A836G	p.D279G	CGTCTGTCTATTT	.	163	73	217	0	.	90	C	95236690	T	C	95236690	3	2	44	1	0	0	0	0	1	0	0	0	5063	1667	58	2	1114	2	ELL2	5	95236690	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	26521010	95236690	85678570	97	6237											
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101631729	101631729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLCO4C1	NM_180991	exon1	c.C238G	p.L80V	CGGACAGCGACAG	.	99	29	147	0	.	93	C	101631729	G	C	101631729	3	2	44	1	0	0	0	0	1	0	0	0	14730	962	34	4	1988	4	SLCO4C1	5	101631729	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	6395039	101631729	79283531	98	6238											
MAN2A1	4124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109049407	109049407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MAN2A1	NM_002372	exon2	c.T322G	p.S108A	CAATTATCCCTCT	.	85	23	97	0	.	92	G	109049407	T	G	109049407	3	3	44	1	0	0	0	0	1	0	0	0	9214	1435	50	5	328	5	MAN2A1	5	109049407	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	7417678	109049407	71865853	99	6239											
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	112849665	112849665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	YTHDC2	NM_022828	exon1	c.T73C	p.C25R	TCGCCTTGTGGCC	.	70	21	86	0	.	92	C	112849665	T	C	112849665	3	2	44	1	0	0	0	0	1	0	0	0	17494	1812	63	2	75	2	YTHDC2	5	112849665	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	3800258	112849665	68065595	100	6240											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	118513717	118513717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMXL1	NM_005509	exon28	c.A6913T	p.N2305Y	CTTTTGAATTCTT	.	89	15	102	0	.	92	T	118513717	A	T	118513717	3	4	44	1	0	0	0	0	1	0	0	0	4594	246	9	4	7023	4	DMXL1	5	118513717	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5664052	118513717	62401543	101	6241											
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127484507	127484507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC12A2	NM_001046	exon12	c.A1943G	p.N648S	GGAAAAATAATGA	.	74	9	92	0	.	94	G	127484507	A	G	127484507	3	3	44	1	0	0	0	0	1	0	0	0	14383	101	4	2	1989	2	SLC12A2	5	127484507	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	8970790	127484507	53430753	102	6242											
P4HA2	8974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131552947	131552947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	P4HA2	NM_001017974	exon4	c.C274T	p.R92W	TTAGCCGCTTCAC	.	49	18	73	0	.	68	A	131552947	G	A	131552947	3	1	44	1	0	0	0	0	1	0	0	0	11357	1086	38	1	1445	1	P4HA2	5	131552947	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	4068440	131552947	49362313	103	6243											
SMAD5	4090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135496605	135496605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SMAD5	.	.	.	.	TTCTGGTTCAGTT	.	140	80	208	0	.	278	G	135496605	T	G	135496605	3	3	44	1	0	0	0	0	1	0	0	0	14761	1725	60	5	470	5	SMAD5	5	135496605	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	3943658	135496605	45418655	104	6244											
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140432008	140432008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PCDHB1	NM_013340	exon1	c.A953G	p.D318G	ACATTGACATTCA	.	89	22	129	0	.	90	G	140432008	A	G	140432008	3	3	44	1	0	0	0	0	1	0	0	0	11534	275	10	2	955	2	PCDHB1	5	140432008	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	4935403	140432008	40483252	105	6245											
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558117	140558117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PCDHB8	NM_019120	exon1	c.A502G	p.I168V	AACAATATTGAGA	.	352	71	512	0	.	131	G	140558117	A	G	140558117	3	3	44	1	0	0	0	0	1	0	0	0	11548	449	16	2	504	2	PCDHB8	5	140558117	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	126109	140558117	40357143	106	6246											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147030071	147030071	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JAKMIP2	NM_001270941	exon4	c.C667T	p.L223L	TTTCCAGGGAAAA	.	138	51	163	0	.	154	A	147030071	G	A	147030071	2	1	44	1	0	0	0	0	0	0	0	1	7941	991	35	3		3	JAKMIP2	5	147030071	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	6471954	147030071	33885189	107	6247											
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150678223	150678223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC36A3	NM_181774	exon2	c.C150A	p.H50Q	CAACAAGTGGATC	.	73	15	94	0	.	93	T	150678223	G	T	150678223	3	4	44	1	0	0	0	0	1	0	0	0	14595	1020	36	3	1425	3	SLC36A3	5	150678223	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	3648152	150678223	30237037	108	6248											
SPARC	6678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151045983	151045983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPARC	NM_003118	exon8	c.A673T	p.N225Y	ACATGTTATAGTT	.	88	46	98	0	.	514	A	151045983	T	A	151045983	3	1	44	1	0	0	0	0	1	0	0	0	14994	1754	61	4	250	4	SPARC	5	151045983	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	367760	151045983	29869277	109	6249											
FAM114A2	10827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153413430	153413430	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM114A2	NM_018691	exon4	c.A324G	p.S108S	GACATTTGAAATG	.	151	41	166	0	.	90	C	153413430	T	C	153413430	2	2	44	1	0	0	0	0	0	0	0	1	5404	1799	63	2		2	FAM114A2	5	153413430	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	2367447	153413430	27501830	110	6250											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15501254	15501254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JARID2	NM_004973	exon8	c.A2062G	p.R688G	ATCCCCAGAACTG	.	80	9	99	0	.	228	G	15501254	A	G	15501254	3	3	44	1	0	0	0	0	1	0	0	0	7945	180	7	2	2092	2	JARID2	6	15501254	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		15501254	155613813	111	6251											
HIST1H3I	8354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27839739	27839739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HIST1H3I	NM_003533	exon1	c.A355C	p.T119P	TAATAGTGACGCG	.	101	39	111	0	.	91	G	27839739	T	G	27839739	3	3	44	1	0	0	0	0	1	0	0	0	7163	1696	59	5	59	5	HIST1H3I	6	27839739	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	12338485	27839739	143275328	112	6252											
OR2B2	81697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27879561	27879561	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR2B2	NM_033057	exon1	c.T537C	p.C179C	GACTTCACAGAAG	.	76	28	75	0	.	68	G	27879561	A	G	27879561	2	3	44	1	0	0	0	0	0	0	0	1	10989	157	6	2		2	OR2B2	6	27879561	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	39822	27879561	143235506	113	6253											
TRIM27	5987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	28876789	28876789	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRIM27	NM_006510	exon5	c.A847T	p.K283X	GACATTTTTGGGC	.	201	45	135	0	.	684	A	28876789	T	A	28876789	4	1	44	1	0	0	0	0	0	1	0	0	16498	1850	64	4	710	4	TRIM27	6	28876789	Nonsense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	997228	28876789	142238278	114	6254											
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28963167	28963167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF311	NM_001010877	exon7	c.G1612T	p.G538W	ACTTCCCACTGAA	.	87	8	121	0	.	22	A	28963167	C	A	28963167	3	1	44	1	0	0	0	0	1	0	0	0	17831	594	21	3	392	3	ZNF311	6	28963167	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	86378	28963167	142151900	115	6255											
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29342442	29342442	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR12D3	NM_030959	exon1	c.623delC	p.A208fs	AAGAAAGCTCCCA	.	67	16	74	0	.	133	-	29342442	G	-	29342442	7	5	44	1	0	1	0	1	0	0	0	0	10932	971	34	0	331	0	OR12D3	6	29342442	Frame_Shift_Del	DEL	G	TCGA-CC-A7IK-01A-12D-A33Q-10	379275	29342442	141772625	116	6256											
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32085719	32085719	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATF6B	NM_004381	exon12	c.A1341T	p.P447P	CTGAACTGGCTCT	.	107	32	90	0	.	90	A	32085719	T	A	32085719	2	1	44	1	0	0	0	0	0	0	0	1	1085	1567	55	4		4	ATF6B	6	32085719	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	2743277	32085719	139029348	117	6257											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	32163815	32163815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOTCH4	NM_004557	exon30	c.C5411T	p.A1804V	ACGTCCGCCGGCG	.	21	13	9	0	.	1321	A	32163815	G	A	32163815	3	1	44	1	0	0	0	0	1	0	0	0	10551	1087	38	1	604	1	NOTCH4	6	32163815	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	78096	32163815	138951252	118	6258											
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	41754595	41754596	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRICKLE4	NM_013397	exon8	c.883_884insGC	p.S295fs	GGTTCCAGCCTGC	.	76	39	57	0	.	22	GC	41754596	-	GC	41754595	7	5	44	1	0	1	1	0	0	0	0	0	12489	188	7	0	905	0	PRICKLE4	6	41754595	Frame_Shift_Ins	INS	-	TCGA-CC-A7IK-01A-12D-A33Q-10	9590780	41754595	129360472	119	6259											
RCAN2	10231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46424645	46424645	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RCAN2	NM_001251973	exon2	c.A69G	p.G23G	AAGTCCTCCATCT	.	86	17	68	0	.	90	C	46424645	T	C	46424645	2	2	44	1	0	0	0	0	0	0	0	1	13169	1566	54	2		2	RCAN2	6	46424645	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4670050	46424645	124690422	120	6260											
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46828555	46828555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR116	NM_015234	exon16	c.C2276T	p.A759V	TGTTCCGCTTTGT	.	78	37	91	0	.	91	A	46828555	G	A	46828555	3	1	44	1	0	0	0	0	1	0	0	0	6633	1087	38	1	1788	1	GPR116	6	46828555	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	403910	46828555	124286512	121	6261											
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	49937328	49937328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DEFB113	NM_001037729	exon1	c.T11G	p.L4R	ATACAAAGTATCT	.	89	8	52	0	.	90	C	49937328	A	C	49937328	3	2	44	1	0	0	0	0	1	0	0	0	4402	72	3	5	237	5	DEFB113	6	49937328	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	3108773	49937328	121177739	122	6262											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70092727	70092727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BAI3	NM_001704	exon31	c.T4280C	p.V1427A	AGAAGGTCATGCA	.	74	26	83	0	.	1148	C	70092727	T	C	70092727	3	2	44	1	0	0	0	0	1	0	0	0	1300	1667	58	2	4394	2	BAI3	6	70092727	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	20155399	70092727	101022340	123	6263											
C6orf57	135154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71289154	71289154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C6orf57	NM_145267	exon2	c.T102G	p.S34R	AACAAGTTCTTCT	.	102	30	94	0	.	90	G	71289154	T	G	71289154	3	3	44	1	0	0	0	0	1	0	0	0	2366	1722	60	5	108	5	C6orf57	6	71289154	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1196427	71289154	99825913	124	6264											
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74407156	74407156	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CD109	NM_133493	exon2	c.C108T	p.I36I	GATCATCAGGCCC	.	71	23	71	0	.	155	T	74407156	C	T	74407156	2	4	44	1	0	0	0	0	0	0	0	1	2963	816	29	3		3	CD109	6	74407156	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	3118002	74407156	96707911	125	6265											
HTR1B	3351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	78172967	78172967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HTR1B	NM_000863	exon1	c.C154A	p.L52M	TAACCAGCAGTAC	.	149	95	162	0	.	90	T	78172967	G	T	78172967	3	4	44	1	0	0	0	0	1	0	0	0	7437	962	34	3	1022	3	HTR1B	6	78172967	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	3765811	78172967	92942100	126	6266											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83862023	83862023	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DOPEY1	NM_015018	exon30	c.A6066G	p.A2022A	ACCTGCAATGGAA	.	109	36	124	0	.	155	G	83862023	A	G	83862023	2	3	44	1	0	0	0	0	0	0	0	1	4707	117	5	2		2	DOPEY1	6	83862023	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5689056	83862023	87253044	127	6267	37	2									
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83862028	83862028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DOPEY1	NM_015018	exon30	c.A6071C	p.E2024A	CAATGGAAACCGC	.	108	37	124	0	.	155	C	83862028	A	C	83862028	3	2	44	1	0	0	0	0	1	0	0	0	4707	246	9	5	6181	5	DOPEY1	6	83862028	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5	83862028	87253039	128	6268	37	2									
FUT9	10690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96651917	96651917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FUT9	NM_006581	exon3	c.A886T	p.S296C	TCTCCCAGTGAGC	.	56	8	51	0	.	95	T	96651917	A	T	96651917	3	4	44	1	0	0	0	0	1	0	0	0	6111	188	7	4	888	4	FUT9	6	96651917	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	12789889	96651917	74463150	129	6269											
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	109766714	109766714	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MICAL1	NM_022765	exon21	c.A2692T	p.K898X	AGGTCTTGGCAAA	.	67	26	47	0	.	154	A	109766714	T	A	109766714	4	1	44	1	0	0	0	0	0	1	0	0	9569	1821	63	4	531	4	MICAL1	6	109766714	Nonsense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	13114797	109766714	61348353	130	6270											
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110081565	110081565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FIG4	NM_014845	exon11	c.A1250T	p.D417V	CCTGGGACATGGC	.	81	20	94	0	.	69	T	110081565	A	T	110081565	3	4	44	1	0	0	0	0	1	0	0	0	5888	275	10	4	1292	4	FIG4	6	110081565	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	314851	110081565	61033502	131	6271											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111696479	111696479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	REV3L	NM_002912	exon13	c.G3079T	p.V1027F	CGGGAACTTTTGG	.	52	12	45	0	.	294	A	111696479	C	A	111696479	3	1	44	1	0	0	0	0	1	0	0	0	13240	565	20	3	6393	3	REV3L	6	111696479	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1614914	111696479	59418588	132	6272											
DSE	29940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116757490	116757490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DSE	NM_001080976	exon6	c.A1859G	p.D620G	GGATGGACGATAC	.	100	23	76	1	.	91	G	116757490	A	G	116757490	3	3	44	1	0	0	0	0	1	0	0	0	4774	275	10	2	1877	2	DSE	6	116757490	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5061011	116757490	54357577	133	6273											
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	130415451	130415451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	L3MBTL3	NM_032438	exon18	c.T1675C	p.S559P	GGATGCTCAACCC	.	79	10	70	0	.	96	C	130415451	T	C	130415451	3	2	44	1	0	0	0	0	1	0	0	0	8593	1551	54	2	1737	2	L3MBTL3	6	130415451	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	13657961	130415451	40699616	134	6274											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143090697	143090697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HIVEP2	NM_006734	exon5	c.T5179C	p.F1727L	GAGTAAACTGCTT	.	70	52	55	0	.	95	G	143090697	A	G	143090697	3	3	44	1	0	0	0	0	1	0	0	0	7187	43	2	2	2185	2	HIVEP2	6	143090697	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	12675246	143090697	28024370	135	6275											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152652650	152652650	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SYNE1	NM_182961	exon78	c.C13170T	p.I4390I	ACTGCAGATGGCC	.	104	71	133	0	.	607	A	152652650	G	A	152652650	2	1	44	1	0	0	0	0	0	0	0	1	15442	932	33	3		3	SYNE1	6	152652650	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	9561953	152652650	18462417	136	6276											
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776020	155776020	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOX3	NM_015718	exon3	c.C180T	p.C60C	ATTCAGGCACAGT	.	98	32	74	0	.	91	A	155776020	G	A	155776020	2	1	44	1	0	0	0	0	0	0	0	1	10557	1195	42	3		3	NOX3	6	155776020	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	3123370	155776020	15339047	137	6277											
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159650876	159650876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FNDC1	NM_032532	exon10	c.A1210C	p.K404Q	GCTCTCAAACCAT	.	82	22	60	0	.	138	C	159650876	A	C	159650876	3	2	44	1	0	0	0	0	1	0	0	0	5968	131	5	5	1248	5	FNDC1	6	159650876	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	3874856	159650876	11464191	138	6278											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168352222	168352222	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MLLT4	NM_001040000	exon29	c.A4167T	p.P1389P	TCTCCCACCACCC	.	71	7	50	0	.	685	T	168352222	A	T	168352222	2	4	44	1	0	0	0	0	0	0	0	1	9629	146	6	4		4	MLLT4	6	168352222	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	8701346	168352222	2762845	139	6279											
LFNG	3955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2565185	2565185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LFNG	NM_001040167	exon4	c.T719A	p.V240D	AGCGGGTCAGCGA	.	39	13	46	0	.	636	A	2565185	T	A	2565185	3	1	44	1	0	0	0	0	1	0	0	0	8737	1667	58	4	1009	4	LFNG	7	2565185	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		2565185	156573478	140	6280											
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4801902	4801902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FOXK1	NM_001037165	exon9	c.A2009T	p.K670M	GGCCCAAGGAGCC	.	129	37	124	0	.	516	T	4801902	A	T	4801902	3	4	44	1	0	0	0	0	1	0	0	0	6014	72	3	4	2043	4	FOXK1	7	4801902	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2236717	4801902	154336761	141	6281											
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5643005	5643005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FSCN1	NM_003088	exon2	c.T950A	p.L317Q	GGACGCTGACGGC	.	62	10	70	0	.	91	A	5643005	T	A	5643005	3	1	44	1	0	0	0	0	1	0	0	0	6067	1580	55	4	956	4	FSCN1	7	5643005	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	841103	5643005	153495658	142	6282											
STK31	56164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23766879	23766879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK31	NM_031414	exon5	c.C269T	p.S90F	TATTTTCTGAAGA	.	78	36	109	0	.	338	T	23766879	C	T	23766879	3	4	44	1	0	0	0	0	1	0	0	0	15295	913	32	3	287	3	STK31	7	23766879	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	18123874	23766879	135371784	143	6283											
HOXA11	3207	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27224509	27224509	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HOXA11	NM_005523	exon1	c.G255T	p.A85A	CTCCTCCGCGGAG	.	73	37	96	0	.	1082	A	27224509	C	A	27224509	2	1	44	1	0	0	0	0	0	0	0	1	7290	639	23	1		1	HOXA11	7	27224509	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	3457630	27224509	131914154	144	6284											
STK17A	9263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43647961	43647961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK17A	NM_004760	exon3	c.T526G	p.F176V	GTTCACTTTTTAC	.	134	59	164	0	.	335	G	43647961	T	G	43647961	3	3	44	1	0	0	0	0	1	0	0	0	15289	1609	56	5	536	5	STK17A	7	43647961	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	16423452	43647961	115490702	145	6285											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47870917	47870917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PKD1L1	NM_138295	exon42	c.A6371G	p.Q2124R	GACCACTGGGGCA	.	96	36	121	0	.	145	C	47870917	T	C	47870917	3	2	44	1	0	0	0	0	1	0	0	0	11964	1580	55	2	2242	2	PKD1L1	7	47870917	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4222956	47870917	111267746	146	6286											
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	50514059	50514060	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FIGNL1	NM_022116	exon4	c.927_928insA	p.K309fs	GTGGTACTTTTTT	.	113	28	148	0	.	93	T	50514060	-	T	50514059	7	5	44	1	0	1	1	0	0	0	0	0	5892	564	20	0	1101	0	FIGNL1	7	50514059	Frame_Shift_Ins	INS	-	TCGA-CC-A7IK-01A-12D-A33Q-10	2643142	50514059	108624604	147	6287											
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64388967	64388967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF273	NM_021148	exon4	c.A1261G	p.K421E	AAACATAAGAGAA	.	148	22	143	0	.	90	G	64388967	A	G	64388967	3	3	44	1	0	0	0	0	1	0	0	0	17805	363	13	2	1275	2	ZNF273	7	64388967	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	13874908	64388967	94749696	148	6288											
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99272195	99272195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP3A5	NM_001190484	exon3	c.T179G	p.F60C	GTGTCAAATTTCC	.	42	22	69	0	.	90	C	99272195	A	C	99272195	3	2	44	1	0	0	0	0	1	0	0	0	4180	14	1	5	1373	5	CYP3A5	7	99272195	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	34883228	99272195	59866468	149	6289											
AZGP1	563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99569527	99569527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AZGP1	NM_001185	exon2	c.G179T	p.R60I	TTGTATCTAAAGA	.	81	18	79	0	.	515	A	99569527	C	A	99569527	3	1	44	1	0	0	0	0	1	0	0	0	1239	913	32	3	729	3	AZGP1	7	99569527	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	297332	99569527	59569136	150	6290											
TMEM168	64418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112412840	112412840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM168	NM_022484	exon4	c.A1542T	p.L514L	ACCTGCTAGAGCC	.	139	37	194	0	.	91	A	112412840	T	A	112412840	2	1	44	1	0	0	0	0	0	0	0	1	16080	1509	53	4		4	TMEM168	7	112412840	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	12843313	112412840	46725823	151	6291											
CFTR	1080	hgsc.bcm.edu;broad.mit.edu	37	7	117175426	117175426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CFTR	NM_000492	exon6	c.T704C	p.L235P	TTGCCCTTTTTCA	.	96	4	121	0	.	518	C	117175426	T	C	117175426	3	2	44	1	0	0	0	0	1	0	0	0	3294	1609	56	2	726	2	CFTR	7	117175426	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4762586	117175426	41963237	152	6292											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653534	121653534	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRZ1	NM_002851	exon12	c.T4434A	p.S1478S	ACTATCTGAGAAT	.	69	27	92	0	.	699	A	121653534	T	A	121653534	2	1	44	1	0	0	0	0	0	0	0	1	12814	1567	55	4		4	PTPRZ1	7	121653534	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4478108	121653534	37485129	153	6293											
GCC1	79571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127222729	127222729	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GCC1	NM_024523	exon2	c.T1667A	p.L556Q	CGGGCCAGCTCCT	.	34	5	48	0	.	92	T	127222729	A	T	127222729	3	4	44	1	0	0	0	0	1	0	0	0	6285	188	7	4	664	4	GCC1	7	127222729	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5569195	127222729	31915934	154	6294											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136700208	136700208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHRM2	NM_001006632	exon3	c.T596C	p.V199A	TGCCAGTGATCAT	.	58	30	69	0	.	94	C	136700208	T	C	136700208	3	2	44	1	0	0	0	0	1	0	0	0	3377	1696	59	2	598	2	CHRM2	7	136700208	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	9477479	136700208	22438455	155	6295											
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137776523	137776523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AKR1D1	NM_001190907	exon3	c.A271G	p.T91A	TGGGCTACAAATC	.	75	14	67	0	.	91	G	137776523	A	G	137776523	3	3	44	1	0	0	0	0	1	0	0	0	473	391	14	2	281	2	AKR1D1	7	137776523	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1076315	137776523	21362140	156	6296											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143021573	143021573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLCN1	NM_000083	exon7	c.A841G	p.T281A	TTTGGGACACCAC	.	98	29	98	0	.	156	G	143021573	A	G	143021573	3	3	44	1	0	0	0	0	1	0	0	0	3462	275	10	2	867	2	CLCN1	7	143021573	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5245050	143021573	16117090	157	6297											
GIMAP8	155038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150164267	150164267	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GIMAP8	NM_175571	exon2	c.T481A	p.Y161N	CAAGACTATGAGG	.	85	21	65	1	.	95	A	150164267	T	A	150164267	3	1	44	1	0	0	0	0	1	0	0	0	6385	1522	53	4	483	4	GIMAP8	7	150164267	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	7142694	150164267	8974396	158	6298											
GALNT11	63917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151810421	151810421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GALNT11	NM_022087	exon8	c.G1171C	p.G391R	CCCGAAGGCCAGG	.	104	14	125	0	.	90	C	151810421	G	C	151810421	3	2	44	1	0	0	0	0	1	0	0	0	6209	1000	35	4	1197	4	GALNT11	7	151810421	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1646154	151810421	7328242	159	6299											
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24254913	24254913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMDEC1	NM_014479	exon6	c.A571G	p.S191G	GTGAAGAGCACTG	.	88	34	115	0	.	228	G	24254913	A	G	24254913	3	3	44	1	0	0	0	0	1	0	0	0	254	304	11	2	593	2	ADAMDEC1	8	24254913	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		24254913	122109109	160	6300											
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27293843	27293843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTK2B	NM_173174	exon20	c.A1319G	p.Y440C	AGGTCTATGAAGG	.	90	12	129	0	.	1378	G	27293843	A	G	27293843	3	3	44	1	0	0	0	0	1	0	0	0	12763	449	16	2	1373	2	PTK2B	8	27293843	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	3038930	27293843	119070179	161	6301											
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	31498128	31498128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NRG1	NM_013962	exon1	c.G628A	p.E210K	TTCATGGAGCCCG	.	68	34	78	0	.	525	A	31498128	G	A	31498128	3	1	44	1	0	0	0	0	1	0	0	0	10647	1175	41	3	630	3	NRG1	8	31498128	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	4204285	31498128	114865894	162	6302											
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39018462	39018462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAM32	NM_145004	exon7	c.A572G	p.H191R	AAATGCATATTGT	.	79	31	64	0	.	227	G	39018462	A	G	39018462	3	3	44	1	0	0	0	0	1	0	0	0	249	217	8	2	598	2	ADAM32	8	39018462	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	7520334	39018462	107345560	163	6303											
AGPAT6	137964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41469773	41469773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AGPAT6	NM_178819	exon7	c.G776A	p.S259N	TGGCCAGCGATGG	.	91	33	107	0	.	90	A	41469773	G	A	41469773	3	1	44	1	0	0	0	0	1	0	0	0	391	971	34	3	798	3	AGPAT6	8	41469773	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	2451311	41469773	104894249	164	6304											
C8orf22	492307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	49986888	49986888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001256598	exon4	c.A229G	p.T77A	TCTGCTACTGGGT	.	63	17	64	0	.	.	G	49986888	A	G	49986888	3	3	44	1	0	0	0	0	1	0	0	0	2419	391	14	2	239	2	C8orf22	8	49986888	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	8517115	49986888	96377134	165	6305											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68107738	68107738	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CSPP1	NM_024790	exon29	c.C3576T	p.F1192F	ACGTTTCATGGCA	.	174	89	163	0	.	138	T	68107738	C	T	68107738	2	4	44	1	0	0	0	0	0	0	0	1	3962	825	29	3		3	CSPP1	8	68107738	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	18120850	68107738	78256284	166	6306											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71036125	71036125	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NCOA2	NM_006540	exon21	c.C4287T	p.P1429P	CTGCTCGGGACCC	.	126	34	103	0	.	639	A	71036125	G	A	71036125	2	1	44	1	0	0	0	0	0	0	0	1	10229	1103	39	1		1	NCOA2	8	71036125	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	2928387	71036125	75327897	167	6307											
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72229893	72229893	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EYA1	NM_000503	exon7	c.T450A	p.G150G	CAATCCACCTTCA	.	58	23	55	0	.	652	T	72229893	A	T	72229893	2	4	44	1	0	0	0	0	0	0	0	1	5328	146	6	4		4	EYA1	8	72229893	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1193768	72229893	74134129	168	6308											
IMPA1	3612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82572837	82572837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPA1	NM_001144878	exon9	c.A809G	p.Y270C	TCATAATATGCAT	.	453	53	290	0	.	226	C	82572837	T	C	82572837	3	2	44	1	0	0	0	0	1	0	0	0	7722	1406	49	2	209	2	IMPA1	8	82572837	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	10342944	82572837	63791185	169	6309											
CA1	759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	86250479	86250479	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CA1	NM_001738	exon5	c.235+2T>A	.	CAGCTCACCTGAT	.	92	13	60	0	.	91	T	86250479	A	T	86250479	5	4	44	1	0	0	0	0	0	0	1	0	2510	173	6	4	572	4	CA1	8	86250479	Splice_Site	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	3677642	86250479	60113543	170	6310											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	131797638	131797638	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADCY8	NM_001115	exon16	c.T3144A	p.P1048P	TTTTTCAGGTGAC	.	75	6	49	0	.	157	T	131797638	A	T	131797638	2	4	44	1	0	0	0	0	0	0	0	1	300	175	7	4		4	ADCY8	8	131797638	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	45547159	131797638	14566384	171	6311											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131848557	131848557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	ADCY8,rectum,carcinoma,+2	ADCY8	NM_001115	exon12	c.T2641C	p.F881L	GCAGAAAGAGGCC	.	130	46	98	0	.	157	G	131848557	A	G	131848557	3	3	44	1	0	0	0	0	1	0	0	0	300	72	3	2	1142	2	ADCY8	8	131848557	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	50919	131848557	14515465	172	6312											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133935748	133935748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TG	NM_003235	exon22	c.G4694C	p.C1565S	CACAGTGTTTGAG	.	89	24	67	0	.	145	C	133935748	G	C	133935748	3	2	44	1	0	0	0	0	1	0	0	0	15810	1377	48	4	4780	4	TG	8	133935748	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	2087191	133935748	12428274	173	6313											
WISP1	8840	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134225330	134225330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WISP1	NM_003882	exon2	c.G293T	p.G98V	ACCGGGGCCTCTA	.	224	35	168	1	.	610	T	134225330	G	T	134225330	3	4	44	1	0	0	0	0	1	0	0	0	17369	1203	42	3	299	3	WISP1	8	134225330	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	289582	134225330	12138692	174	6314											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141889628	141889628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTK2	NM_005607	exon4	c.A370G	p.M124V	CGCCCATATCCAC	.	194	92	128	0	.	1517	C	141889628	T	C	141889628	3	2	44	1	0	0	0	0	1	0	0	0	12762	1406	49	2	2970	2	PTK2	8	141889628	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	7664298	141889628	4474394	175	6315											
ZFP41	286128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144332183	144332183	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZFP41	NM_173832	exon2	c.A170T	p.E57V	AAGACGAAGAGCA	.	97	7	79	0	.	91	T	144332183	A	T	144332183	3	4	44	1	0	0	0	0	1	0	0	0	17646	246	9	4	172	4	ZFP41	8	144332183	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2442555	144332183	2031839	176	6316											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145001890	145001890	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLEC	NM_201380	exon27	c.C3855T	p.A1285A	CCGCAGGGCGTCG	.	59	11	48	0	.	141	A	145001890	G	A	145001890	2	1	44	1	0	0	0	0	0	0	0	1	12052	1219	43	3		3	PLEC	8	145001890	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	669707	145001890	1362132	177	6317											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145758592	145758592	+	Missense_Mutation	SNP	C	C	T	rs144988605	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP39	NM_025251	exon10	c.G2806A	p.E936K	GGCGCTCGGGGTA	.	62	24	41	0	C|1.000;G|0.000	90	T	145758592	C	T	145758592	3	4	44	1	0	0	0	0	1	0	0	0	884	893	31	1	554	1	ARHGAP39	8	145758592	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	756702	145758592	605430	178	6318											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145806392	145806392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP39	NM_025251	exon4	c.G350A	p.R117H	GAGGCGCGCGGGG	.	55	23	42	0	.	90	T	145806392	C	T	145806392	3	4	44	1	0	0	0	0	1	0	0	0	884	768	27	1	3034	1	ARHGAP39	8	145806392	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	47800	145806392	557630	179	6319											
CHMP5	51510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33271184	33271184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHMP5	NM_016410	exon5	c.A350G	p.K117R	AAATGAAGAAGGC	.	49	25	57	0	.	91	G	33271184	A	G	33271184	3	3	44	1	0	0	0	0	1	0	0	0	3359	72	3	2	368	2	CHMP5	9	33271184	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		33271184	107942247	180	6320											
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37541574	37541574	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXO10	NM_012166	exon2	c.A192G	p.P64P	CACATCTGGCTGG	.	127	36	132	0	.	637	C	37541574	T	C	37541574	2	2	44	1	0	0	0	0	0	0	0	1	5726	1567	55	2		2	FBXO10	9	37541574	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4270390	37541574	103671857	181	6321											
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	75431065	75431065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMC1	NM_138691	exon19	c.T1702G	p.Y568D	CCTTCATACACCG	.	95	13	97	0	.	91	G	75431065	T	G	75431065	3	3	44	1	0	0	0	0	1	0	0	0	15981	1406	49	5	1760	5	TMC1	9	75431065	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	37889491	75431065	65782366	182	6322											
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95148565	95148565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OGN	NM_033014	exon6	c.T644A	p.L215H	AAGGTGAGGTTAT	.	64	29	50	0	.	492	T	95148565	A	T	95148565	3	4	44	1	0	0	0	0	1	0	0	0	10846	304	11	4	260	4	OGN	9	95148565	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	19717500	95148565	46064866	183	6323											
NIPSNAP3B	55335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	107533137	107533137	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NIPSNAP3B	NM_018376	exon4	c.T438A	p.Y146X	AGTCTATGAACTA	.	88	31	74	0	.	92	A	107533137	T	A	107533137	4	1	44	1	0	0	0	0	0	1	0	0	10431	1471	51	4	452	4	NIPSNAP3B	9	107533137	Nonsense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	12384572	107533137	33680294	184	6324											
PPP6C	5537	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127920663	127920663	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PPP6C	NM_002721	exon5	c.238-2A>T	.	TCACCCTGTGAAG	.	102	8	58	0	.	227	A	127920663	T	A	127920663	5	1	44	1	0	0	0	0	0	0	1	0	12407	1594	55	4	697	4	PPP6C	9	127920663	Splice_Site	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	20387526	127920663	13292768	185	6325											
LMX1B	4010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129458665	129458665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LMX1B	NM_001174146	exon8	c.C1156A	p.Q386K	TCCCTGCAGGCCC	.	108	35	114	0	.	90	A	129458665	C	A	129458665	3	1	44	1	0	0	0	0	1	0	0	0	8862	711	25	3	1207	3	LMX1B	9	129458665	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1538002	129458665	11754766	186	6326											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138642869	138642869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KCNT1	NM_020822	exon4	c.C416A	p.P139Q	ATGACCCGGCCCT	.	27	10	38	0	.	137	A	138642869	C	A	138642869	3	1	44	1	0	0	0	0	1	0	0	0	8091	652	23	1	430	1	KCNT1	9	138642869	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	9184204	138642869	2570562	187	6327											
C9orf172	389813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139740383	139740383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001080482	exon1	c.T1517C	p.L506P	CCGCACTGTCCCT	.	51	26	41	0	.	.	C	139740383	T	C	139740383	3	2	44	1	0	0	0	0	1	0	0	0	2471	1580	55	2	1519	2	C9orf172	9	139740383	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1097514	139740383	1473048	188	6328											
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27822715	27822715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RAB18	NM_001256410	exon6	c.A398G	p.N133S	GGTTAAATGAATT	.	67	18	61	0	.	227	G	27822715	A	G	27822715	3	3	44	1	0	0	0	0	1	0	0	0	12903	101	4	2	329	2	RAB18	10	27822715	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		27822715	107712032	189	6329											
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49687731	49687731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP22	NM_001256025	exon4	c.G417A	p.M139I	GTCCTCCATGTCA	.	73	21	71	0	.	228	T	49687731	C	T	49687731	3	4	44	1	0	0	0	0	1	0	0	0	872	594	21	3	1725	3	ARHGAP22	10	49687731	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	21865016	49687731	85847016	190	6330											
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50873041	50873041	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHAT	NM_020549	exon15	c.A2196G	p.P732P	CAAGCCATTGGCA	.	64	45	79	0	.	514	G	50873041	A	G	50873041	2	3	44	1	0	0	0	0	0	0	0	1	3313	204	8	2		2	CHAT	10	50873041	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1185310	50873041	84661706	191	6331											
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70190319	70190319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001080449	exon14	c.A2082G	p.I694M	AAATCCTATTTTA	.	85	23	111	0	.	.	C	70190319	T	C	70190319	3	2	44	1	0	0	0	0	1	0	0	0	4596	1512	53	2	1132	2	DNA2	10	70190319	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	19317278	70190319	65344428	192	6332											
ASCC1	51008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73892879	73892879	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASCC1	NM_001198799	exon9	c.A891G	p.K297K	CCACTCTTTCACT	.	85	23	97	0	.	226	C	73892879	T	C	73892879	2	2	44	1	0	0	0	0	0	0	0	1	1031	1606	56	2		2	ASCC1	10	73892879	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	3702560	73892879	61641868	193	6333											
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97916998	97916998	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF518A	.	.	.	.	GCAAAGACTTCTG	.	92	51	125	1	.	23	G	97916998	A	G	97916998	1	3	44	0	1	0	0	0	0	0	0	0	17959	275	10	2		2	ZNF518A	10	97916998	RNA	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	24024119	97916998	37617749	194	6334											
GOLGA7B	401647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99623744	99623744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GOLGA7B	NM_001010917	exon3	c.G196A	p.A66T	GCAGAGGCTGAGA	.	63	15	81	0	.	90	A	99623744	G	A	99623744	3	1	44	1	0	0	0	0	1	0	0	0	6562	1203	42	3	206	3	GOLGA7B	10	99623744	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1706746	99623744	35911003	195	6335											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101556936	101556936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCC2	NM_000392	exon7	c.G715T	p.V239L	ACATTAGTGAGCA	.	63	32	79	0	.	91	T	101556936	G	T	101556936	3	4	44	1	0	0	0	0	1	0	0	0	53	1029	36	3	741	3	ABCC2	10	101556936	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1933192	101556936	33977811	196	6336											
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104389884	104389884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SUFU	NM_016169	exon12	c.A1427T	p.D476V	TGCCTGACGTGGT	.	51	23	75	0	.	2246	T	104389884	A	T	104389884	3	4	44	1	0	0	0	0	1	0	0	0	15367	275	10	4	1483	4	SUFU	10	104389884	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2832948	104389884	31144863	197	6337											
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106924072	106924072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SORCS3	NM_014978	exon12	c.C1744G	p.P582A	ATTGGCCCGGAGC	.	46	6	44	0	.	99	G	106924072	C	G	106924072	3	3	44	1	0	0	0	0	1	0	0	0	14932	623	22	4	1790	4	SORCS3	10	106924072	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	2534188	106924072	28610675	198	6338											
EIF3A	8661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120819149	120819149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EIF3A	NM_003750	exon10	c.G1408A	p.A470T	CTATGGCCCGTTC	.	256	63	281	0	.	226	T	120819149	C	T	120819149	3	4	44	1	0	0	0	0	1	0	0	0	5012	739	26	3	2792	3	EIF3A	10	120819149	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	13895077	120819149	14715598	199	6339											
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123276887	123276887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FGFR2	NM_000141	exon8	c.G1030T	p.A344S	TACCCGCCAAGCA	.	86	22	102	0	.	2607	A	123276887	C	A	123276887	3	1	44	1	0	0	0	0	1	0	0	0	5866	739	26	3	1583	3	FGFR2	10	123276887	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	2457738	123276887	12257860	200	6340											
FAM196A	642938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128973670	128973670	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM196A	NM_001039762	exon4	c.G990C	p.G330G	CCCCAGCCCCGGC	.	37	9	30	0	.	70	G	128973670	C	G	128973670	2	3	44	1	0	0	0	0	0	0	0	1	5528	726	26	4		4	FAM196A	10	128973670	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	5696783	128973670	6561077	201	6341											
NPS	594857	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	129350903	129350903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NPS	NM_001030013	exon3	c.A270T	p.X90C	ATCATGACTAAGT	.	76	16	89	1	.	22	T	129350903	A	T	129350903	3	4	44	1	0	0	0	0	1	0	0	0	10599	288	10	4	280	4	NPS	10	129350903	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	377233	129350903	6183844	202	6342											
VENTX	27287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135053333	135053333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VENTX	NM_014468	exon2	c.A395T	p.E132V	TCTCAGAGGTCCA	.	44	12	42	0	.	90	T	135053333	A	T	135053333	3	4	44	1	0	0	0	0	1	0	0	0	17150	304	11	4	401	4	VENTX	10	135053333	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5702430	135053333	481414	203	6343											
LRRC56	115399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	552109	552109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRC56	NM_198075	exon12	c.A1058T	p.Q353L	CCGAGCAGCTGCC	.	76	37	107	0	.	91	T	552109	A	T	552109	3	4	44	1	0	0	0	0	1	0	0	0	9012	188	7	4	1092	4	LRRC56	11	552109	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		552109	134454407	204	6344											
OR52A1	23538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5172674	5172674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR52A1	NM_012375	exon1	c.T926C	p.M309T	CAGAACATTTTTA	.	58	19	92	0	.	114	G	5172674	A	G	5172674	3	3	44	1	0	0	0	0	1	0	0	0	11108	217	8	2	14	2	OR52A1	11	5172674	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	4620565	5172674	129833842	205	6345											
TRIM6-TRIM34	445372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5624771	5624771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRIM6-TRIM34	NM_001003819	exon2	c.A313G	p.I105V	GCCAACATAGTGA	.	31	15	68	0	.	45	G	5624771	A	G	5624771	3	3	44	1	0	0	0	0	1	0	0	0	16531	217	8	2	319	2	TRIM6-TRIM34	11	5624771	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	452097	5624771	129381745	206	6346											
ZNF408	79797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46724704	46724704	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF408	NM_024741	exon4	c.A563T	p.E188V	ACAAAGAGGCAGC	.	39	12	87	1	.	90	T	46724704	A	T	46724704	3	4	44	1	0	0	0	0	1	0	0	0	17885	304	11	4	609	4	ZNF408	11	46724704	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	41099933	46724704	88281812	207	6347											
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47289839	47289839	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NR1H3	NM_001251934	exon9	c.A1148C	p.Q383P	AGCTCCAGGTAGA	.	62	27	100	0	.	228	C	47289839	A	C	47289839	3	2	44	1	0	0	0	0	1	0	0	0	10618	188	7	5	1160	5	NR1H3	11	47289839	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	565135	47289839	87716677	208	6348											
OR5B17	219965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58126348	58126348	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR5B17	NM_001005489	exon1	c.T195C	p.S65S	TGCAAGAGACAGG	.	27	10	85	0	.	71	G	58126348	A	G	58126348	2	3	44	1	0	0	0	0	0	0	0	1	11149	291	11	2		2	OR5B17	11	58126348	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	10836509	58126348	76880168	209	6349											
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63883947	63883947	+	Silent	SNP	C	C	A	rs139162750	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLRT1	NM_013280	exon2	c.C208A	p.R70R	AACGACCGGGGAC	.	26	18	53	0	C|1.000;T|0.000	90	A	63883947	C	A	63883947	2	1	44	1	0	0	0	0	0	0	0	1	5938	643	23	1		1	FLRT1	11	63883947	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	5757599	63883947	71122569	210	6350											
CCDC88B	283234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64111953	64111953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC88B	NM_032251	exon14	c.A1940G	p.E647G	GCCCTGAGCACAA	.	58	22	89	0	.	94	G	64111953	A	G	64111953	3	3	44	1	0	0	0	0	1	0	0	0	2864	304	11	2	1994	2	CCDC88B	11	64111953	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	228006	64111953	70894563	211	6351											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71948760	71948760	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	INPPL1	NM_001567	exon26	c.C3472T	p.L1158L	CGGGGACTGCCCT	.	59	25	105	0	.	660	T	71948760	C	T	71948760	2	4	44	1	0	0	0	0	0	0	0	1	7761	564	20	3		3	INPPL1	11	71948760	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	7836807	71948760	63057756	212	6352											
MMP27	64066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102573828	102573828	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MMP27	NM_022122	exon3	c.T363A	p.D121E	TGCCATATCCGGA	.	59	34	100	0	.	229	T	102573828	A	T	102573828	3	4	44	1	0	0	0	0	1	0	0	0	9664	446	16	4	1210	4	MMP27	11	102573828	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	30625068	102573828	32432688	213	6353											
DDI1	414301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103908140	103908140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DDI1	NM_001001711	exon1	c.G590T	p.R197M	AAGAGAGGCTTCG	.	51	5	100	0	.	137	T	103908140	G	T	103908140	3	4	44	1	0	0	0	0	1	0	0	0	4328	1000	35	3	592	3	DDI1	11	103908140	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1334312	103908140	31098376	214	6354											
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	110033998	110033998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZC3H12C	NM_033390	exon5	c.G1149T	p.K383N	TGACAGGTTCATG	.	56	26	93	0	.	68	T	110033998	G	T	110033998	3	4	44	1	0	0	0	0	1	0	0	0	17560	1275	44	3	1167	3	ZC3H12C	11	110033998	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	6125858	110033998	24972518	215	6355											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu	37	11	113102431	113102431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NCAM1	NM_001242607	exon12	c.T1232C	p.I411T	AGAGCATCCAGTA	.	68	4	97	0	.	23	C	113102431	T	C	113102431	3	2	44	1	0	0	0	0	1	0	0	0	10202	1435	50	2	1193	2	NCAM1	11	113102431	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	3068433	113102431	21904085	216	6356											
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8800721	8800721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MFAP5	NM_003480	exon10	c.A488G	p.E163G	ACATTTTCACAGG	.	85	70	166	0	.	577	C	8800721	T	C	8800721	3	2	44	1	0	0	0	0	1	0	0	0	9518	1783	62	2	37	2	MFAP5	12	8800721	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		8800721	125051174	217	6357											
RPAP3	79657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48064026	48064026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RPAP3	NM_024604	exon13	c.A1390T	p.N464Y	CTAGATTAATAGG	.	55	20	55	0	.	69	A	48064026	T	A	48064026	3	1	44	1	0	0	0	0	1	0	0	0	13543	1754	61	4	627	4	RPAP3	12	48064026	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	39263305	48064026	85787869	218	6358											
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49391094	49391094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DDN	NM_015086	exon2	c.A1565T	p.Q522L	CCGGGCTGGTGTA	.	180	89	195	0	.	90	A	49391094	T	A	49391094	3	1	44	1	0	0	0	0	1	0	0	0	4333	1580	55	4	574	4	DDN	12	49391094	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1327068	49391094	84460801	219	6359											
RACGAP1	29127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50388003	50388003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RACGAP1	NM_013277	exon14	c.C1250T	p.A417V	CAGATAGCATGGA	.	104	42	96	0	.	227	A	50388003	G	A	50388003	3	1	44	1	0	0	0	0	1	0	0	0	12977	971	34	3	672	3	RACGAP1	12	50388003	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	996909	50388003	83463892	220	6360											
KRT71	112802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52938508	52938508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT71	NM_033448	exon9	c.T1380G	p.S460R	GCCGCCACTGGTG	.	22	7	36	0	.	92	C	52938508	A	C	52938508	3	2	44	1	0	0	0	0	1	0	0	0	8484	156	6	5	195	5	KRT71	12	52938508	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2550505	52938508	80913387	221	6361											
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53073703	53073703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT1	NM_006121	exon1	c.G430T	p.G144C	CAGGACCATAACC	.	113	26	191	0	.	92	A	53073703	C	A	53073703	3	1	44	1	0	0	0	0	1	0	0	0	8447	594	21	3	1540	3	KRT1	12	53073703	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	135195	53073703	80778192	222	6362											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67691234	67691234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CAND1	NM_018448	exon5	c.T539C	p.L180P	CCTGTCTACTTCC	.	112	51	114	0	.	516	C	67691234	T	C	67691234	3	2	44	1	0	0	0	0	1	0	0	0	2615	1522	53	2	557	2	CAND1	12	67691234	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	14617531	67691234	66160661	223	6363											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78362415	78362415	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NAV3	NM_014903	exon5	c.C604A	p.R202R	CAGCAGCGAGTTA	.	213	87	194	0	.	279	A	78362415	C	A	78362415	2	1	44	1	0	0	0	0	0	0	0	1	10185	760	27	1		1	NAV3	12	78362415	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	10671181	78362415	55489480	224	6364											
NEDD1	121441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	97337446	97337446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NEDD1	NM_001135175	exon11	c.C1424A	p.S475Y	TGGGATCTCCAGG	.	55	19	61	0	.	90	A	97337446	C	A	97337446	3	1	44	1	0	0	0	0	1	0	0	0	10309	913	32	3	1466	3	NEDD1	12	97337446	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	18975031	97337446	36514449	225	6365											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120575521	120575521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GCN1L1	NM_006836	exon49	c.A6491G	p.E2164G	CCCACCTCAGGGC	.	69	10	91	0	.	94	C	120575521	T	C	120575521	3	2	44	1	0	0	0	0	1	0	0	0	6299	1551	54	2	1564	2	GCN1L1	12	120575521	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	23238075	120575521	13276374	226	6366											
KNTC1	9735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123086099	123086099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KNTC1	NM_014708	exon45	c.A4580G	p.Y1527C	ATGACTATGAAAT	.	30	4	33	0	.	543	G	123086099	A	G	123086099	3	3	44	1	0	0	0	0	1	0	0	0	8428	449	16	2	4754	2	KNTC1	12	123086099	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2510578	123086099	10765796	227	6367											
CCDC92	80212	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124427315	124427315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC92	NM_025140	exon4	c.A199G	p.T67A	TGACTGTCAGCTC	.	71	16	80	1	.	90	C	124427315	T	C	124427315	3	2	44	1	0	0	0	0	1	0	0	0	2871	1667	58	2	804	2	CCDC92	12	124427315	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1341216	124427315	9424580	228	6368											
LATS2	26524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21549409	21549409	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LATS2	NM_014572	exon8	c.A2867T	p.D956V	CGGTGGTCTGCGG	.	71	25	88	0	.	1404	A	21549409	T	A	21549409	3	1	44	1	0	0	0	0	1	0	0	0	8647	1667	58	4	403	4	LATS2	13	21549409	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		21549409	93620469	229	6369											
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24410481	24410481	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MIPEP	NM_005932	exon14	c.G1551A	p.R517R	AGGGCACCTGGTC	.	50	16	53	0	.	90	T	24410481	C	T	24410481	2	4	44	1	0	0	0	0	0	0	0	1	9592	506	18	3		3	MIPEP	13	24410481	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	2861072	24410481	90759397	230	6370											
ATP12A	479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25284608	25284608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP12A	NM_001185085	exon20	c.A2792G	p.Q931R	GGTACCAGAGGGA	.	80	39	164	0	.	137	G	25284608	A	G	25284608	3	3	44	1	0	0	0	0	1	0	0	0	1122	188	7	2	2870	2	ATP12A	13	25284608	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	874127	25284608	89885270	231	6371											
WBP4	11193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41656941	41656941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WBP4	NM_007187	exon10	c.C1022T	p.T341I	AAAAAACAGTCAC	.	75	17	100	0	.	289	T	41656941	C	T	41656941	3	4	44	1	0	0	0	0	1	0	0	0	17258	478	17	3	1060	3	WBP4	13	41656941	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	16372333	41656941	73512937	232	6372											
TNFSF11	8600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	43174893	43174893	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TNFSF11	NM_003701	exon3	c.A393G	p.L131L	GGAATTACAACAT	.	38	13	46	0	.	522	G	43174893	A	G	43174893	2	3	44	1	0	0	0	0	0	0	0	1	16299	388	14	2		2	TNFSF11	13	43174893	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1517952	43174893	71994985	233	6373											
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	114535616	114535616	+	Missense_Mutation	SNP	T	T	A	rs200744856	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GAS6	NM_000820	exon9	c.A944T	p.Q315L	GTGGGCTGCAGCC	.	40	4	40	0	T|0.999;C|0.000	650	A	114535616	T	A	114535616	3	1	44	1	0	0	0	0	1	0	0	0	6249	1580	55	4	1120	4	GAS6	13	114535616	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	71360723	114535616	634262	234	6374											
RASA3	22821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114766318	114766318	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RASA3	NM_007368	exon19	c.C1833A	p.T611T	GTGGTAGGTAAAT	.	85	37	124	0	.	658	T	114766318	G	T	114766318	2	4	44	1	0	0	0	0	0	0	0	1	13062	987	35	3		3	RASA3	13	114766318	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	230702	114766318	403560	235	6375											
RNASE10	338879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20979115	20979115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RNASE10	NM_001012975	exon1	c.A485T	p.K162M	AGCTCAAGGGGGG	.	66	9	108	0	.	90	T	20979115	A	T	20979115	3	4	44	1	0	0	0	0	1	0	0	0	13400	72	3	4	487	4	RNASE10	14	20979115	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		20979115	86370425	236	6376											
GZMB	3002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	25101298	25101298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GZMB	NM_004131	exon4	c.A366T	p.R122S	CACAGCTCTGGTC	.	55	16	55	0	.	514	A	25101298	T	A	25101298	3	1	44	1	0	0	0	0	1	0	0	0	6916	1548	54	4	385	4	GZMB	14	25101298	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4122183	25101298	82248242	237	6377											
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45433642	45433642	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM179B	NM_015091	exon1	c.A2018T	p.Q673L	AAAACCAGACCTC	.	32	25	46	0	.	93	T	45433642	A	T	45433642	3	4	44	1	0	0	0	0	1	0	0	0	5506	188	7	4	2020	4	FAM179B	14	45433642	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	20332344	45433642	61915898	238	6378											
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63860613	63860613	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PPP2R5E	NM_006246	exon8	c.A774G	p.A258A	GTGTTCTGCCTTA	.	76	13	82	0	.	658	C	63860613	T	C	63860613	2	2	44	1	0	0	0	0	0	0	0	1	12396	1567	55	2		2	PPP2R5E	14	63860613	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	18426971	63860613	43488927	239	6379											
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74411141	74411141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM161B	NM_152445	exon3	c.G1011C	p.Q337H	GTCTCTCTGTCGA	.	56	13	70	0	.	91	G	74411141	C	G	74411141	3	3	44	1	0	0	0	0	1	0	0	0	5473	912	32	4	1149	4	FAM161B	14	74411141	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	10550528	74411141	32938399	240	6380											
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707630	96707630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BDKRB2	NM_000623	exon3	c.A965G	p.Y322C	TGGCCTACAGCAA	.	61	7	111	0	.	662	G	96707630	A	G	96707630	3	3	44	1	0	0	0	0	1	0	0	0	1393	391	14	2	971	2	BDKRB2	14	96707630	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	22296489	96707630	10641910	241	6381											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105408806	105408806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AHNAK2	NM_138420	exon7	c.G12982A	p.V4328M	CCTCCACCTTCAG	.	82	54	93	0	.	47	T	105408806	C	T	105408806	3	4	44	1	0	0	0	0	1	0	0	0	415	507	18	3	4409	3	AHNAK2	14	105408806	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	8701176	105408806	1940734	242	6382											
OTUD7A	161725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	31776404	31776404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OTUD7A	NM_130901	exon11	c.T1874G	p.L625R	GCGCGCAGGATGT	.	20	10	22	0	.	502	C	31776404	A	C	31776404	3	2	44	1	0	0	0	0	1	0	0	0	11318	188	7	5	910	5	OTUD7A	15	31776404	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		31776404	70754988	243	6383											
PLA2G4D	283748	broad.mit.edu;mdanderson.org	37	15	42362276	42362276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLA2G4D	NM_178034	exon19	c.G2061T	p.E687D	GTACAGCTCCGTC	.	16	4	23	0	.	136	A	42362276	C	A	42362276	3	1	44	1	0	0	0	0	1	0	0	0	12004	796	28	3	403	3	PLA2G4D	15	42362276	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	10585872	42362276	60169116	244	6384											
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49033896	49033896	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CEP152	NM_001194998	exon26	c.A3995T	p.E1332V	TTTTTCTCAGCCC	.	45	10	55	0	.	70	A	49033896	T	A	49033896	3	1	44	1	0	0	0	0	1	0	0	0	3248	1551	54	4	1145	4	CEP152	15	49033896	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	6671620	49033896	53497496	245	6385											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63970246	63970246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC1	NM_003922	exon37	c.G6868T	p.D2290Y	AGAGGTCAGCGAG	.	70	28	83	0	.	666	A	63970246	C	A	63970246	3	1	44	1	0	0	0	0	1	0	0	0	7057	826	29	3	7885	3	HERC1	15	63970246	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	14936350	63970246	38561146	246	6386											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63986548	63986548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC1	NM_003922	exon29	c.A5443T	p.S1815C	TTGTACTGGCCAC	.	65	13	119	0	.	666	A	63986548	T	A	63986548	3	1	44	1	0	0	0	0	1	0	0	0	7057	1580	55	4	9342	4	HERC1	15	63986548	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	16302	63986548	38544844	247	6387											
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	79059245	79059245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMTS7	NM_014272	exon19	c.C3008A	p.P1003H	CCTTCAGGGCCCA	.	55	21	83	0	.	226	T	79059245	G	T	79059245	3	4	44	1	0	0	0	0	1	0	0	0	271	1000	35	3	2076	3	ADAMTS7	15	79059245	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	15072697	79059245	23472147	248	6388											
ADAMTSL3	57188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84568428	84568428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMTSL3	NM_207517	exon15	c.T1645A	p.W549R	TTGCCTTGGCTGA	.	174	66	232	0	.	1153	A	84568428	T	A	84568428	3	1	44	1	0	0	0	0	1	0	0	0	276	1812	63	4	1699	4	ADAMTSL3	15	84568428	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5509183	84568428	17962964	249	6389											
MEF2A	4205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100214726	100214726	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEF2A	NM_005587	exon6	c.A525G	p.T175T	GTTAACAGATTCA	.	89	39	119	0	.	455	G	100214726	A	G	100214726	2	3	44	1	0	0	0	0	0	0	0	1	9455	175	7	2		2	MEF2A	15	100214726	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	15646298	100214726	2316666	250	6390											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101562141	101562141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRK1	NM_024652	exon14	c.C1831A	p.P611T	AATGTGCCTGCAG	.	35	18	77	0	.	602	A	101562141	C	A	101562141	3	1	44	1	0	0	0	0	1	0	0	0	9032	739	26	3	1881	3	LRRK1	15	101562141	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1347415	101562141	969251	251	6391											
OR4F6	390648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102346471	102346471	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR4F6	NM_001005326	exon1	c.A549G	p.R183R	TCCTCGATTTATC	.	74	34	80	0	.	69	G	102346471	A	G	102346471	2	3	44	1	0	0	0	0	0	0	0	1	11066	320	12	2		2	OR4F6	15	102346471	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	784330	102346471	184921	252	6392											
PRSS22	64063	broad.mit.edu;mdanderson.org	37	16	2903200	2903200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRSS22	NM_022119	exon6	c.C848A	p.S283Y	ACCCAGGAGCGGT	.	9	5	9	0	.	90	T	2903200	G	T	2903200	3	4	44	1	0	0	0	0	1	0	0	0	12619	1174	41	3	109	3	PRSS22	16	2903200	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10		2903200	87451553	253	6393											
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3304779	3304779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEFV	NM_000243	exon2	c.C289G	p.Q97E	TTTCTTGTGTGGA	.	36	10	31	0	.	228	C	3304779	G	C	3304779	3	2	44	1	0	0	0	0	1	0	0	0	9459	1386	48	4	2092	4	MEFV	16	3304779	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	401579	3304779	87049974	254	6394											
SEC14L5	9717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5050737	5050737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_014692	exon9	c.T1052A	p.L351Q	CGCTGCTGCGGCA	.	57	23	66	0	.	.	A	5050737	T	A	5050737	3	1	44	1	0	0	0	0	1	0	0	0	13985	1580	55	4	1082	4	SEC14L5	16	5050737	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1745958	5050737	85304016	255	6395											
IGSF6	10261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21654919	21654919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGSF6	NM_005849	exon4	c.T535A	p.S179T	ATTTTGACTGCCA	.	73	14	57	0	.	68	T	21654919	A	T	21654919	3	4	44	1	0	0	0	0	1	0	0	0	7603	289	10	4	202	4	IGSF6	16	21654919	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	16604182	21654919	68699834	256	6396											
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56435757	56435757	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AMFR	NM_001144	exon9	c.975-2A>T	.	CAAACCTGTGGAA	.	40	8	43	0	.	1009	A	56435757	T	A	56435757	5	1	44	1	0	0	0	0	0	0	1	0	571	1594	55	4	986	4	AMFR	16	56435757	Splice_Site	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	34780838	56435757	33918996	257	6397											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72993128	72993128	+	Missense_Mutation	SNP	C	C	T	rs142256050	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZFHX3	NM_006885	exon2	c.G917A	p.R306Q	GTCATTCGATGGT	.	153	35	181	0	C|0.999;T|0.001	72	T	72993128	C	T	72993128	3	4	44	1	0	0	0	0	1	0	0	0	17631	884	31	1	10230	1	ZFHX3	16	72993128	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	16557371	72993128	17361625	258	6398											
CMIP	80790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81691394	81691394	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_198390	exon5	c.C654A	p.T218T	CTTGACCACCCAG	.	120	25	136	0	.	.	A	81691394	C	A	81691394	2	1	44	1	0	0	0	0	0	0	0	1	3578	581	21	3		3	CMIP	16	81691394	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	8698266	81691394	8663359	259	6399											
OR3A1	4994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3195335	3195335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR3A1	NM_002550	exon1	c.A542G	p.Y181C	TCACAGTAGAAGT	.	79	62	169	0	.	70	C	3195335	T	C	3195335	3	2	44	1	0	0	0	0	1	0	0	0	11037	1638	57	2	409	2	OR3A1	17	3195335	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		3195335	77999875	260	6400											
TP53	7157	broad.mit.edu;bcgsc.ca	37	17	7576866	7576866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	TP53,NS,carcinoma,+1	TP53	NM_000546	exon9	c.980delA	p.Y327fs	GTGAAATATTCTC	.	15	8	82	0	.	70225	-	7576866	T	-	7576866	7	5	44	1	0	1	0	1	0	0	0	0	16378	1406	49	0	302	0	TP53	17	7576866	Frame_Shift_Del	DEL	T	TCGA-CC-A7IK-01A-12D-A33Q-10	4381531	7576866	73618344	261	6401	38	2									
TP53	7157	broad.mit.edu;bcgsc.ca	37	17	7576868	7576897	+	In_Frame_Del	DEL	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	TP53,colon,carcinoma,-2	TP53	NM_000546	exon9	c.949_978del	p.317_326del	GAAATATTCTCCA	.	11	8	82	0	.	70225	-	7576897	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	-	7576868	7	5	44	1	0	1	0	1	0	0	0	0	16378	1490	52	0	304	0	TP53	17	7576868	In_Frame_Del	DEL	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TCGA-CC-A7IK-01A-12D-A33Q-10	2	7576868	73618342	262	6402	38	2									
MYH10	4628	broad.mit.edu;bcgsc.ca	37	17	8383601	8383604	+	Frame_Shift_Del	DEL	GCGC	GCGC	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	GCGC	GCGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MYH10	NM_001256012	exon40	c.5421_5424del	p.1807_1808del	GGCGCTGCGCTCG	.	7	4	49	0	.	92	-	8383604	GCGC	-	8383601	7	5	44	1	0	1	0	1	0	0	0	0	10030	1306	46	0	615	0	MYH10	17	8383601	Frame_Shift_Del	DEL	GCGC	TCGA-CC-A7IK-01A-12D-A33Q-10	806733	8383601	72811609	263	6403	39	2									
MYH10	4628	broad.mit.edu;bcgsc.ca	37	17	8383607	8383624	+	In_Frame_Del	DEL	GGCTGCTAGCTCGGCGTT	GGCTGCTAGCTCGGCGTT	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	GGCTGCTAGCTCGGCGTT	GGCTGCTAGCTCGGCGTT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MYH10	NM_001256012	exon40	c.5401_5418del	p.1801_1806del	GCGCTCGGCTGCT	.	6	4	48	0	.	92	-	8383624	GGCTGCTAGCTCGGCGTT	-	8383607	7	5	44	1	0	1	0	1	0	0	0	0	10030	1103	39	0	621	0	MYH10	17	8383607	In_Frame_Del	DEL	GGCTGCTAGCTCGGCGTT	TCGA-CC-A7IK-01A-12D-A33Q-10	6	8383607	72811603	264	6404	39	2									
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9739777	9739777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GLP2R	NM_004246	exon3	c.C367T	p.P123S	TACTTACCTTGGT	.	40	26	118	0	.	524	T	9739777	C	T	9739777	3	4	44	1	0	0	0	0	1	0	0	0	6453	507	18	3	377	3	GLP2R	17	9739777	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1356170	9739777	71455433	265	6405											
FBXW10	10517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18653121	18653121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXW10	NM_001267585	exon3	c.G757A	p.D253N	GGGTACGATCCCT	.	344	15	315	0	.	91	A	18653121	G	A	18653121	3	1	44	1	0	0	0	0	1	0	0	0	5763	1058	37	1	767	1	FBXW10	17	18653121	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	8913344	18653121	62542089	266	6406											
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19741841	19741841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ULK2	NM_001142610	exon10	c.A760G	p.R254G	GGTTTCTCTGAAG	.	172	84	180	0	.	334	C	19741841	T	C	19741841	3	2	44	1	0	0	0	0	1	0	0	0	16973	1559	54	2	2422	2	ULK2	17	19741841	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1088720	19741841	61453369	267	6407											
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26089920	26089920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOS2	NM_000625	exon22	c.A2704T	p.I902F	TCAGAATGGGGAG	.	58	24	60	0	.	156	A	26089920	T	A	26089920	3	1	44	1	0	0	0	0	1	0	0	0	10543	1464	51	4	781	4	NOS2	17	26089920	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	6348079	26089920	55105290	268	6408											
VTN	7448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26695961	26695961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VTN	NM_000638	exon5	c.A758T	p.N253I	TCCACGTTGTCCG	.	130	63	131	0	.	227	A	26695961	T	A	26695961	3	1	44	1	0	0	0	0	1	0	0	0	17234	1725	60	4	694	4	VTN	17	26695961	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	606041	26695961	54499249	269	6409											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27017150	27017150	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SUPT6H	NM_003170	exon26	c.C3393T	p.S1131S	GCTGAGCTGTCGA	.	205	98	209	0	.	93	T	27017150	C	T	27017150	2	4	44	1	0	0	0	0	0	0	0	1	15397	796	28	3		3	SUPT6H	17	27017150	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	321189	27017150	54178060	270	6410											
TAOK1	57551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27829620	27829620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TAOK1	NM_025142	exon13	c.A1217G	p.Y406C	AAAATTACAGAGA	.	91	13	88	0	.	521	G	27829620	A	G	27829620	3	3	44	1	0	0	0	0	1	0	0	0	15544	391	14	2	1263	2	TAOK1	17	27829620	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	812470	27829620	53365590	271	6411											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29554603	29554603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NF1	NM_000267	exon20	c.A2388C	p.K796N	TCCAAAAGCCAAA	.	144	18	131	0	.	3353	C	29554603	A	C	29554603	3	2	44	1	0	0	0	0	1	0	0	0	10356	69	3	5	2527	5	NF1	17	29554603	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1724983	29554603	51640607	272	6412											
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	33921086	33921086	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AP2B1	NM_001282	exon2	c.G37T	p.G13X	AAAAAAGGTAAGT	.	314	59	338	0	.	91	T	33921086	G	T	33921086	4	4	44	1	0	0	0	0	0	1	0	0	741	1014	35	3	39	3	AP2B1	17	33921086	Nonsense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	4366483	33921086	47274124	273	6413											
KRT31	3881	hgsc.bcm.edu;mdanderson.org	37	17	39553767	39553767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT31	NM_002277	exon1	c.A25T	p.S9C	TCAGGCTGGGCAG	.	55	16	52	0	.	90	A	39553767	T	A	39553767	3	1	44	1	0	0	0	0	1	0	0	0	8467	1580	55	4	1253	4	KRT31	17	39553767	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5632681	39553767	41641443	274	6414											
KRT19	3880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39684180	39684180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT19	NM_002276	exon1	c.A320G	p.E107G	TCTAGCTCGCCGT	.	93	18	85	0	.	90	C	39684180	T	C	39684180	3	2	44	1	0	0	0	0	1	0	0	0	8456	1551	54	2	906	2	KRT19	17	39684180	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	130413	39684180	41511030	275	6415											
DHX8	1659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41582013	41582013	+	Silent	SNP	G	G	A	rs145241921	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DHX8	NM_004941	exon12	c.G1548A	p.A516A	TCCAGCGGAAGGC	.	76	28	82	0	G|1.000;A|0.000	229	A	41582013	G	A	41582013	2	1	44	1	0	0	0	0	0	0	0	1	4515	1130	39	1		1	DHX8	17	41582013	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1897833	41582013	39613197	276	6416											
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42949889	42949889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EFTUD2	NM_004247	exon11	c.G919A	p.V307I	AGCAGACGTTACC	.	116	49	112	0	.	91	T	42949889	C	T	42949889	3	4	44	1	0	0	0	0	1	0	0	0	4961	536	19	1	2071	1	EFTUD2	17	42949889	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1367876	42949889	38245321	277	6417											
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43910820	43910820	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CRHR1	NM_001145146	exon11	c.C933A	p.I311I	GCAGATCAATTTC	.	79	19	92	0	.	522	A	43910820	C	A	43910820	2	1	44	1	0	0	0	0	0	0	0	1	3871	816	29	3		3	CRHR1	17	43910820	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	960931	43910820	37284390	278	6418											
LPO	4025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56343575	56343575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LPO	NM_006151	exon11	c.1581delT	p.N527fs	ACAGAATAAAATG	.	82	27	92	0	.	91	-	56343575	T	-	56343575	7	5	44	1	0	1	0	1	0	0	0	0	8922	1403	49	0	1619	0	LPO	17	56343575	Frame_Shift_Del	DEL	T	TCGA-CC-A7IK-01A-12D-A33Q-10	12432755	56343575	24851635	279	6419											
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56349142	56349142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MPO	NM_000250	exon11	c.G1904T	p.G635V	GGCGTGCCATACT	.	74	22	82	0	.	156	A	56349142	C	A	56349142	3	1	44	1	0	0	0	0	1	0	0	0	9732	739	26	3	341	3	MPO	17	56349142	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	5567	56349142	24846068	280	6420											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56663388	56663388	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TEX14	NM_001201457	exon18	c.T2862A	p.P954P	ATGCCAAGGAGGT	.	73	32	70	0	.	810	T	56663388	A	T	56663388	2	4	44	1	0	0	0	0	0	0	0	1	15775	59	3	4		4	TEX14	17	56663388	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	314246	56663388	24531822	281	6421											
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61958465	61958465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GH2	NM_022557	exon3	c.A215C	p.Q72P	GGGTTCTGCAGGA	.	67	35	65	0	.	93	G	61958465	T	G	61958465	3	3	44	1	0	0	0	0	1	0	0	0	6368	1594	55	5	787	5	GH2	17	61958465	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5295077	61958465	19236745	282	6422											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71348683	71348683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SDK2	NM_001144952	exon41	c.A5687C	p.Y1896S	AAGTCATAGCTCA	.	57	18	63	0	.	24	G	71348683	T	G	71348683	3	3	44	1	0	0	0	0	1	0	0	0	13969	1406	49	5	851	5	SDK2	17	71348683	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	9390218	71348683	9846527	283	6423											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76446801	76446801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNAH17	NM_173628	exon67	c.A10862T	p.E3621V	GTGGTCTCCAGAT	.	62	35	60	0	.	142	A	76446801	T	A	76446801	3	1	44	1	0	0	0	0	1	0	0	0	4601	1551	54	4	2586	4	DNAH17	17	76446801	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5098118	76446801	4748409	284	6424											
ATP9B	374868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76966943	76966943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP9B	NM_198531	exon10	c.A961T	p.S321C	GAAGACAGTGACC	.	23	17	40	0	.	93	T	76966943	A	T	76966943	3	4	44	1	0	0	0	0	1	0	0	0	1199	188	7	4	999	4	ATP9B	18	76966943	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		76966943	1110305	285	6425											
CTDP1	9150	broad.mit.edu;mdanderson.org	37	18	77455996	77455996	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CTDP1	NM_004715	exon3	c.A418T	p.K140X	AACGGGAAGCAGC	.	14	5	30	0	.	90	T	77455996	A	T	77455996	4	4	44	1	0	0	0	0	0	1	0	0	4002	247	9	4	428	4	CTDP1	18	77455996	Nonsense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	489053	77455996	621252	286	6426											
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3918830	3918830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATCAY	NM_033064	exon11	c.T1028C	p.L343P	TTGTGCTGCCCAG	.	63	38	115	0	.	67	C	3918830	T	C	3918830	3	2	44	1	0	0	0	0	1	0	0	0	1077	1580	55	2	1066	2	ATCAY	19	3918830	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		3918830	55210153	287	6427											
SHD	56961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4280338	4280338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SHD	NM_020209	exon1	c.T278A	p.L93Q	CCCTTCTGGGCGG	.	33	15	52	0	.	90	A	4280338	T	A	4280338	3	1	44	1	0	0	0	0	1	0	0	0	14275	1580	55	4	280	4	SHD	19	4280338	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	361508	4280338	54848645	288	6428											
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	4511838	4511838	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLIN4	NM_001080400	exon3	c.A2092T	p.K698X	TCCCTTTGGCGAC	.	113	41	198	0	.	68	A	4511838	T	A	4511838	4	1	44	1	0	0	0	0	0	1	0	0	12092	1821	63	4	1997	4	PLIN4	19	4511838	Nonsense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	231500	4511838	54617145	289	6429											
PLIN3	10226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4844773	4844773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLIN3	NM_001164189	exon7	c.G867T	p.K289N	CACCAGCTTCTGA	.	26	15	46	1	.	90	A	4844773	C	A	4844773	3	1	44	1	0	0	0	0	1	0	0	0	12091	796	28	3	445	3	PLIN3	19	4844773	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	332935	4844773	54284210	290	6430											
FUT3	2525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5843806	5843806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FUT3	NM_001097640	exon3	c.A1045T	p.R349W	GGTACCTGGATTC	.	127	70	220	0	.	90	A	5843806	T	A	5843806	3	1	44	1	0	0	0	0	1	0	0	0	6105	1579	55	4	44	4	FUT3	19	5843806	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	999033	5843806	53285177	291	6431											
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416517	6416517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KHSRP	NM_003685	exon14	c.T1472C	p.I491T	TCCTCGATAAGCT	.	60	24	108	0	.	226	G	6416517	A	G	6416517	3	3	44	1	0	0	0	0	1	0	0	0	8151	333	12	2	691	2	KHSRP	19	6416517	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	572711	6416517	52712466	292	6432											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9065588	9065588	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC16	NM_024690	exon3	c.T21858A	p.S7286S	TCTGCTAGAGGAG	.	21	11	51	0	.	566	T	9065588	A	T	9065588	2	4	44	1	0	0	0	0	0	0	0	1	9973	407	15	4		4	MUC16	19	9065588	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2649071	9065588	50063395	293	6433											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602745	10602745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KEAP1	NM_012289	exon3	c.C833T	p.P278L	AAGTTCGGCGTCA	.	36	17	78	0	.	637	A	10602745	G	A	10602745	3	1	44	1	0	0	0	0	1	0	0	0	8141	1116	39	1	1057	1	KEAP1	19	10602745	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1537157	10602745	48526238	294	6434											
CCDC151	115948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11545698	11545698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC151	NM_145045	exon1	c.C140A	p.A47E	GTCCACGCCTGGG	.	31	22	79	0	.	91	T	11545698	G	T	11545698	3	4	44	1	0	0	0	0	1	0	0	0	2786	1087	38	1	1699	1	CCDC151	19	11545698	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	942953	11545698	47583285	295	6435											
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15636153	15636153	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP4F22	NM_173483	exon3	c.G6A	p.L2L	GATGCTGCCCATC	.	28	7	34	0	.	92	A	15636153	G	A	15636153	2	1	44	1	0	0	0	0	0	0	0	1	4189	1306	46	3		3	CYP4F22	19	15636153	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	4090455	15636153	43492830	296	6436											
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15917916	15917916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR10H1	NM_013940	exon1	c.A932C	p.Y311S	TCTGGGTAGAGTT	.	56	9	105	0	.	68	G	15917916	T	G	15917916	3	3	44	1	0	0	0	0	1	0	0	0	10905	1638	57	5	28	5	OR10H1	19	15917916	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	281763	15917916	43211067	297	6437											
CHERP	10523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16634007	16634007	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHERP	NM_006387	exon11	c.C1836T	p.F612F	AGGGCCGAAGTCA	.	45	27	74	0	.	92	A	16634007	G	A	16634007	2	1	44	1	0	0	0	0	0	0	0	1	3336	1049	37	1		1	CHERP	19	16634007	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	716091	16634007	42494976	298	6438											
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16973709	16973709	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIN3B	NM_015260	exon10	c.A1281C	p.T427T	TTGGACACTTCTC	.	41	13	94	0	.	228	C	16973709	A	C	16973709	2	2	44	1	0	0	0	0	0	0	0	1	14326	146	6	5		5	SIN3B	19	16973709	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	339702	16973709	42155274	299	6439											
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18186614	18186614	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL12RB1	NM_153701	exon7	c.G645T	p.L215L	GCTCCCCAGCTGC	.	39	7	70	0	.	91	A	18186614	C	A	18186614	2	1	44	1	0	0	0	0	0	0	0	1	7626	581	21	3		3	IL12RB1	19	18186614	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1212905	18186614	40942369	300	6440											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22157397	22157397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF208	NM_007153	exon4	c.C439A	p.R147S	TGCCACGTTGAAA	.	50	16	93	0	.	7	T	22157397	G	T	22157397	3	4	44	1	0	0	0	0	1	0	0	0	17763	1145	40	1	3407	1	ZNF208	19	22157397	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	3970783	22157397	36971586	301	6441											
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35551262	35551262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HPN	NM_182983	exon8	c.A466T	p.R156W	GGCCGCAGGAAGC	.	21	4	25	0	.	515	T	35551262	A	T	35551262	3	4	44	1	0	0	0	0	1	0	0	0	7336	179	7	4	492	4	HPN	19	35551262	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	13393865	35551262	23577721	302	6442											
POLR2I	5438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36604924	36604924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	POLR2I	NM_006233	exon5	c.G308A	p.R103Q	TCGGCCCGCGCAC	.	49	15	82	0	.	90	T	36604924	C	T	36604924	3	4	44	1	0	0	0	0	1	0	0	0	12222	652	23	1	77	1	POLR2I	19	36604924	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	1053662	36604924	22524059	303	6443											
SARS2	54938	broad.mit.edu;mdanderson.org	37	19	39416927	39416927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SARS2	NM_001145901	exon2	c.A281C	p.Q94P	AGCTCCTGCCATG	.	12	3	20	0	.	93	G	39416927	T	G	39416927	3	3	44	1	0	0	0	0	1	0	0	0	13845	1580	55	5	1416	5	SARS2	19	39416927	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	2812003	39416927	19712056	304	6444											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42853717	42853717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEGF8	NM_001271938	exon14	c.G2365T	p.A789S	GGGTCTGCTCGCC	.	14	10	39	0	.	23	T	42853717	G	T	42853717	3	4	44	1	0	0	0	0	1	0	0	0	9463	1319	46	3	2214	3	MEGF8	19	42853717	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	3436790	42853717	16275266	305	6445											
LIPE	3991	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42906917	42906917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPE	NM_005357	exon9	c.G2809A	p.V937I	CACGGACGCCCAG	.	31	4	56	0	.	154	T	42906917	C	T	42906917	3	4	44	1	0	0	0	0	1	0	0	0	8821	536	19	1	429	1	LIPE	19	42906917	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	53200	42906917	16222066	306	6446											
PSG2	5670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43576075	43576075	+	Silent	SNP	T	T	C	rs3198704	byfrequency;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PSG2	NM_031246	exon4	c.A741G	p.S247S	GGTGTATGAAGGG	.	108	17	148	0	C|0.570;A|0.430	90	C	43576075	T	C	43576075	2	2	44	1	0	0	0	0	0	0	0	1	12655	1451	51	2		2	PSG2	19	43576075	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	669158	43576075	15552908	307	6447											
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45480646	45480646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLPTM1	NM_001294	exon5	c.A515G	p.K172R	TCACCAAGAGTGG	.	58	11	49	0	.	91	G	45480646	A	G	45480646	3	3	44	1	0	0	0	0	1	0	0	0	3554	72	3	2	533	2	CLPTM1	19	45480646	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1904571	45480646	13648337	308	6448											
TRAPPC6A	79090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45668133	45668133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRAPPC6A	NM_024108	exon3	c.A290G	p.D97G	AGGCTGTCCATCT	.	88	19	80	0	.	90	C	45668133	T	C	45668133	3	2	44	1	0	0	0	0	1	0	0	0	16460	1667	58	2	247	2	TRAPPC6A	19	45668133	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	187487	45668133	13460850	309	6449											
MARK4	57787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45783689	45783689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MARK4	NM_001199867	exon11	c.A1064T	p.Q355L	CCAGCCAGAAGTA	.	277	22	226	0	.	782	T	45783689	A	T	45783689	3	4	44	1	0	0	0	0	1	0	0	0	9315	188	7	4	1106	4	MARK4	19	45783689	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	115556	45783689	13345294	310	6450											
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48523032	48523032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELSPBP1	NM_022142	exon5	c.A412T	p.N138Y	AGAAATAATGTGG	.	148	28	129	0	.	90	T	48523032	A	T	48523032	3	4	44	1	0	0	0	0	1	0	0	0	5083	362	13	4	426	4	ELSPBP1	19	48523032	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	2739343	48523032	10605951	311	6451											
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48967700	48967700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KCNJ14	NM_013348	exon3	c.A977C	p.D326A	AACTGCTCTGGGG	.	101	11	96	0	.	91	C	48967700	T	C	48967700	3	2	44	1	0	0	0	0	1	0	0	0	8048	1551	54	2	983	2	KCNJ14	19	48967700	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	444668	48967700	10161283	312	6452											
PRR12	57479	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50118152	50118152	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRR12	NM_020719	exon8	c.A4910T	p.D1637V	TTGGGGATGCAAA	.	104	21	83	1	.	70	T	50118152	A	T	50118152	3	4	44	1	0	0	0	0	1	0	0	0	12584	333	12	4	4940	4	PRR12	19	50118152	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1150452	50118152	9010831	313	6453											
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630384	51630384	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC9	NM_001198558	exon4	c.T846A	p.P282P	TCCCCCTGCCAGG	.	80	19	64	0	.	91	A	51630384	T	A	51630384	2	1	44	1	0	0	0	0	0	0	0	1	14315	1567	55	4		4	SIGLEC9	19	51630384	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	1512232	51630384	7498599	314	6454											
IGLON5	402665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51830988	51830988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001101372	exon7	c.T770A	p.L257Q	GCAGGCTGAGCAG	.	19	5	24	0	.	.	A	51830988	T	A	51830988	3	1	44	1	0	0	0	0	1	0	0	0	7595	1580	55	4	796	4	IGLON5	19	51830988	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	200604	51830988	7297995	315	6455											
SIGLEC10	89790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51918290	51918290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC10	NM_033130	exon8	c.C1403A	p.A468D	GGGCTGGCCTGGG	.	54	7	35	0	.	91	T	51918290	G	T	51918290	3	4	44	1	0	0	0	0	1	0	0	0	14306	1203	42	3	706	3	SIGLEC10	19	51918290	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	87302	51918290	7210693	316	6456											
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53013987	53013987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001099694	exon6	c.A353G	p.Q118R	AGTCACAAAAAGA	.	191	58	175	0	.	.	G	53013987	A	G	53013987	3	3	44	1	0	0	0	0	1	0	0	0	18007	130	5	2	363	2	ZNF578	19	53013987	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1095697	53013987	6114996	317	6457											
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53645692	53645692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF347	NM_001172675	exon5	c.C392A	p.S131Y	CTGAAGGAACATC	.	85	10	71	0	.	90	T	53645692	G	T	53645692	3	4	44	1	0	0	0	0	1	0	0	0	17858	1174	41	3	2134	3	ZNF347	19	53645692	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	631705	53645692	5483291	318	6458											
VSTM1	284415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54561741	54561741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VSTM1	NM_198481	exon3	c.T174A	p.F58L	CAGCACAAATGTC	.	133	17	122	0	.	90	T	54561741	A	T	54561741	3	4	44	1	0	0	0	0	1	0	0	0	17225	127	5	4	564	4	VSTM1	19	54561741	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	916049	54561741	4567242	319	6459											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2987988	2987988	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRA	NM_002836	exon15	c.830-2A>T	.	TTTCCTAGATGAC	.	41	9	50	0	.	227	T	2987988	A	T	2987988	5	4	44	1	0	0	0	0	0	0	1	0	12795	434	15	4	858	4	PTPRA	20	2987988	Splice_Site	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10		2987988	60037532	320	6460											
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3674260	3674260	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC1	NM_023068	exon13	c.G3342T	p.P1114P	CTGGGCCGGGTGA	.	37	8	57	0	.	167	A	3674260	C	A	3674260	2	1	44	1	0	0	0	0	0	0	0	1	14305	639	23	1		1	SIGLEC1	20	3674260	Silent	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	686272	3674260	59351260	321	6461											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9364907	9364907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLCB4	NM_182797	exon12	c.T913A	p.F305I	CCAGTCTTCCTAG	.	81	23	80	0	.	274	A	9364907	T	A	9364907	3	1	44	1	0	0	0	0	1	0	0	0	12030	1609	56	4	955	4	PLCB4	20	9364907	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	5690647	9364907	53660613	322	6462											
TNNC2	7125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44453043	44453043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TNNC2	NM_003279	exon4	c.A202C	p.S68R	TGCCGCTGCCTGC	.	33	20	40	0	.	91	G	44453043	T	G	44453043	3	3	44	1	0	0	0	0	1	0	0	0	16322	1580	55	5	292	5	TNNC2	20	44453043	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	35088136	44453043	18572477	323	6463											
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130957	45130957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF334	NM_018102	exon5	c.A1021T	p.R341W	GTGACCTGAAATG	.	49	16	70	0	.	92	A	45130957	T	A	45130957	3	1	44	1	0	0	0	0	1	0	0	0	17848	1579	55	4	1025	4	ZNF334	20	45130957	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	677914	45130957	17894563	324	6464											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47296240	47296240	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PREX1	NM_020820	exon12	c.C1488T	p.Y496Y	ATCGTCGTAGCGG	.	86	32	82	0	.	231	A	47296240	G	A	47296240	2	1	44	1	0	0	0	0	0	0	0	1	12476	1140	40	1		1	PREX1	20	47296240	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	2165283	47296240	15729280	325	6465											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50255968	50255968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP9A	NM_006045	exon15	c.A1582G	p.T528A	CAGGGGTCCTCAG	.	144	18	147	0	.	94	C	50255968	T	C	50255968	3	2	44	1	0	0	0	0	1	0	0	0	1198	1667	58	2	1617	2	ATP9A	20	50255968	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	2959728	50255968	12769552	326	6466											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60890246	60890246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LAMA5	NM_005560	exon59	c.A7885G	p.I2629V	GTGCGATCTTCTT	.	21	8	46	0	.	93	C	60890246	T	C	60890246	3	2	44	1	0	0	0	0	1	0	0	0	8609	1435	50	2	3290	2	LAMA5	20	60890246	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	10634278	60890246	2135274	327	6467											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61512777	61512777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DIDO1	NM_001193369	exon16	c.A4531G	p.M1511V	GGGCCATGGAGAC	.	33	5	33	0	.	96	C	61512777	T	C	61512777	3	2	44	1	0	0	0	0	1	0	0	0	4522	1464	51	2	2195	2	DIDO1	20	61512777	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	622531	61512777	1512743	328	6468											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62612637	62612637	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRPF6	NM_012469	exon1	c.G39T	p.A13A	GCCCGCGCCCCTC	.	112	66	110	0	.	70	T	62612637	G	T	62612637	2	4	44	1	0	0	0	0	0	0	0	1	12574	1074	38	1		1	PRPF6	20	62612637	Silent	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	1099860	62612637	412883	329	6469											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15537598	15537598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPI	NM_198996	exon6	c.A910T	p.T304S	AGCTAGTCTTGTA	.	59	32	103	0	.	70	A	15537598	T	A	15537598	3	1	44	1	0	0	0	0	1	0	0	0	8825	1667	58	4	555	4	LIPI	21	15537598	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		15537598	32592297	330	6470											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15537634	15537634	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPI	NM_198996	exon6	c.A874C	p.I292L	ATGAAATAAAATT	.	61	38	103	0	.	70	G	15537634	T	G	15537634	3	3	44	1	0	0	0	0	1	0	0	0	8825	1406	49	5	591	5	LIPI	21	15537634	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	36	15537634	32592261	331	6471											
ABCG1	9619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43646020	43646020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCG1	NM_207174	exon2	c.G315T	p.K105N	GAGGAAGAAAGGT	.	31	24	64	0	.	92	T	43646020	G	T	43646020	3	4	44	1	0	0	0	0	1	0	0	0	68	933	33	3	456	3	ABCG1	21	43646020	Missense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	28108386	43646020	4483875	332	6472											
MLC1	23209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50506909	50506909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MLC1	NM_015166	exon10	c.A847C	p.I283L	TCATGATGCTGAA	.	50	34	114	0	.	91	G	50506909	T	G	50506909	3	3	44	1	0	0	0	0	1	0	0	0	9612	1464	51	5	298	5	MLC1	22	50506909	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10		50506909	797657	333	6473											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240280	3240280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MXRA5	NM_015419	exon5	c.G3446T	p.R1149M	GGTCTCCTTCGAG	.	79	65	108	0	.	136	A	3240280	C	A	3240280	3	1	44	1	0	0	0	0	1	0	0	0	10003	681	24	3	5052	3	MXRA5	23	3240280	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10		3240280	152030280	334	6474											
KAL1	3730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8503725	8503725	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KAL1	NM_000216	exon12	c.T1749A	p.T583T	AAACCCAGTCATG	.	92	37	170	0	.	134	T	8503725	A	T	8503725	2	4	44	1	0	0	0	0	0	0	0	1	7974	175	7	4		4	KAL1	23	8503725	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	5263445	8503725	146766835	335	6475											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32481605	32481605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMD	NM_004006	exon25	c.A3383T	p.E1128V	TCTGTCTCAAGTC	.	46	20	59	0	.	265	A	32481605	T	A	32481605	3	1	44	1	0	0	0	0	1	0	0	0	4580	1551	54	4	8137	4	DMD	23	32481605	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	23977880	32481605	122788955	336	6476											
RBM3	5935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48433627	48433627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RBM3	NM_006743	exon2	c.A59T	p.Q20L	ACGAGCAGGCACT	.	30	13	57	0	.	131	T	48433627	A	T	48433627	3	4	44	1	0	0	0	0	1	0	0	0	13129	188	7	4	61	4	RBM3	23	48433627	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	15952022	48433627	106836933	337	6477											
AKAP4	8852	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	49958228	49958228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AKAP4	NM_003886	exon5	c.T1136C	p.V379A	TCGGACACAATCT	.	27	11	46	1	.	540	G	49958228	A	G	49958228	3	3	44	1	0	0	0	0	1	0	0	0	453	159	6	2	1436	2	AKAP4	23	49958228	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	1524601	49958228	105312332	338	6478											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73812676	73812676	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RLIM	NM_183353	exon5	c.A474G	p.P158P	TGCAGATGGCTCA	.	52	43	105	0	.	228	C	73812676	T	C	73812676	2	2	44	1	0	0	0	0	0	0	0	1	13390	1451	51	2		2	RLIM	23	73812676	Silent	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	23854448	73812676	81457884	339	6479											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	83128470	83128470	+	Nonsense_Mutation	SNP	G	G	T	rs146830604	byfrequency;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYLC1	NM_021118	exon4	c.G754T	p.G252X	TTAGTGGGACAGT	.	110	98	220	0	G|0.999;A|0.001	112	T	83128470	G	T	83128470	4	4	44	1	0	0	0	0	0	1	0	0	4141	1233	43	3	768	3	CYLC1	23	83128470	Nonsense_Mutation	SNP	G	TCGA-CC-A7IK-01A-12D-A33Q-10	9315794	83128470	72142090	340	6480											
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83352788	83352788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RPS6KA6	NM_014496	exon19	c.G1845A	p.M615I	AGCCAACATTGTG	.	146	123	269	2	.	615	T	83352788	C	T	83352788	3	4	44	1	0	0	0	0	1	0	0	0	13655	478	17	3	408	3	RPS6KA6	23	83352788	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	224318	83352788	71917772	341	6481											
ARMCX6	54470	hgsc.bcm.edu;bcgsc.ca	37	X	100871178	100871178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARMCX6	NM_001184768	exon4	c.G433T	p.A145S	AGCCCGCATCCTT	.	99	67	200	0	.	130	A	100871178	C	A	100871178	3	1	44	1	0	0	0	0	1	0	0	0	963	710	25	3	473	3	ARMCX6	23	100871178	Missense_Mutation	SNP	C	TCGA-CC-A7IK-01A-12D-A33Q-10	17518390	100871178	54399382	342	6482											
IL13RA2	3598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114244204	114244204	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL13RA2	NM_000640	exon7	c.T732C	p.L244L	AAAAGTAAGATAG	.	74	25	145	0	.	132	G	114244204	A	G	114244204	2	3	44	1	0	0	0	0	0	0	0	1	7630	349	13	2		2	IL13RA2	23	114244204	Silent	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	13373026	114244204	41026356	343	6483											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134986663	134986663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SAGE1	NM_018666	exon4	c.A248T	p.E83V	TTTGTGAAGAGAG	.	140	53	197	0	.	133	T	134986663	A	T	134986663	3	4	44	1	0	0	0	0	1	0	0	0	13809	246	9	4	258	4	SAGE1	23	134986663	Missense_Mutation	SNP	A	TCGA-CC-A7IK-01A-12D-A33Q-10	20742459	134986663	20283897	344	6484											
MAGEC1	9947	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140996543	140996543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MAGEC1	NM_005462	exon4	c.T3353C	p.I1118T	CCATAATTGACAC	.	23	20	52	1	.	133	C	140996543	T	C	140996543	3	2	44	1	0	0	0	0	1	0	0	0	9180	1493	52	2	3359	2	MAGEC1	23	140996543	Missense_Mutation	SNP	T	TCGA-CC-A7IK-01A-12D-A33Q-10	6009880	140996543	14274017	345	6485											
IL23R	149233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67724414	67724414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	IL23R	NM_144701	exon11	c.T1493G	p.L498R	GCCATCTCAGCAA	.	169	79	257	0	.	90	G	67724414	T	G	67724414	3	3	45	1	0	0	0	0	1	0	0	0	7676	1551	54	5	1531	5	IL23R	1	67724414	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10		67724414	181526207	1	6486											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79472325	79472325	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ELTD1	NM_022159	exon1	c.G15T	p.P5P	TAGGAGCGGGAGG	.	178	81	138	0	.	24	A	79472325	C	A	79472325	2	1	45	1	0	0	0	0	0	0	0	1	5084	755	27	1		1	ELTD1	1	79472325	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	11747911	79472325	169778296	2	6487											
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100356775	100356775	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AGL	NM_000642	exon22	c.2813-1G>T	.	TTTTCAGGTTTAA	.	80	37	62	0	.	92	T	100356775	G	T	100356775	5	4	45	1	0	0	0	0	0	0	1	0	384	1014	35	3	2963	3	AGL	1	100356775	Splice_Site	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	20884450	100356775	148893846	3	6488	40	2									
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100356784	100356784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AGL	NM_000644	exon22	c.T2821G	p.S941A	TTAATGTCTGTAT	.	86	41	70	0	.	92	G	100356784	T	G	100356784	3	3	45	1	0	0	0	0	1	0	0	0	384	1667	58	5	2972	5	AGL	1	100356784	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	9	100356784	148893837	4	6489	40	2									
ADORA3	140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112031572	112031572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ADORA3	NM_020683	exon3	c.G532T	p.A178S	AGTGGGCATTGTA	.	280	128	237	0	.	156	A	112031572	C	A	112031572	3	1	45	1	0	0	0	0	1	0	0	0	329	710	25	3	527	3	ADORA3	1	112031572	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	11674788	112031572	137219049	5	6490											
PRRX1	5396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170633465	170633465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRRX1	NM_006902	exon1	c.G106T	p.V36F	TTCTCCGTCAGTC	.	356	209	259	0	.	659	T	170633465	G	T	170633465	3	4	45	1	0	0	0	0	1	0	0	0	12612	1145	40	1	108	1	PRRX1	1	170633465	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	58601893	170633465	78617156	6	6491											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701871	181701871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CACNA1E	NM_001205293	exon20	c.G2649T	p.W883C	ACCATGGCTGGCC	.	231	132	159	0	.	95	T	181701871	G	T	181701871	3	4	45	1	0	0	0	0	1	0	0	0	2542	1212	42	3	2727	3	CACNA1E	1	181701871	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	11068406	181701871	67548750	7	6492											
F13B	2165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197032133	197032133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	F13B	NM_001994	exon2	c.A119G	p.Y40C	AAAGTATAGTAAT	.	227	121	133	0	.	92	C	197032133	T	C	197032133	3	2	45	1	0	0	0	0	1	0	0	0	5341	1406	49	2	1910	2	F13B	1	197032133	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	15330262	197032133	52218488	8	6493											
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201752875	201752875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NAV1	NM_020443	exon7	c.G2699A	p.S900N	TCCCCAGCAGTAC	.	111	34	57	0	.	228	A	201752875	G	A	201752875	3	1	45	1	0	0	0	0	1	0	0	0	10183	971	34	3	2782	3	NAV1	1	201752875	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	4720742	201752875	47497746	9	6494											
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201982370	201982370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ELF3	NM_001114309	exon7	c.C749G	p.P250R	GCCGGCCCCGAAA	.	258	161	185	0	.	226	G	201982370	C	G	201982370	3	3	45	1	0	0	0	0	1	0	0	0	5055	623	22	4	771	4	ELF3	1	201982370	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	229495	201982370	47268251	10	6495											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216173882	216173882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	USH2A	NM_206933	exon33	c.C6348G	p.H2116Q	AAACTGGTGGGGT	.	119	39	87	0	.	115	C	216173882	G	C	216173882	3	2	45	1	0	0	0	0	1	0	0	0	17033	1252	44	4	9420	4	USH2A	1	216173882	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	14191512	216173882	33076739	11	6496											
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242048690	242048690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EXO1	NM_130398	exon15	c.A2286C	p.R762S	TGCCAGAGCCAGT	.	133	62	87	0	.	661	C	242048690	A	C	242048690	3	2	45	1	0	0	0	0	1	0	0	0	5300	301	11	5	2332	5	EXO1	1	242048690	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	25874808	242048690	7201931	12	6497											
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248458206	248458206	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR2T12	NM_001004692	exon1	c.C675T	p.L225L	GCGCATGAGCAGA	.	497	188	322	0	.	71	A	248458206	G	A	248458206	2	1	45	1	0	0	0	0	0	0	0	1	11019	1277	45	3		3	OR2T12	1	248458206	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	6409516	248458206	792415	13	6498											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25467466	25467466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNMT3A	NM_175629	exon14	c.G1610T	p.C537F	ATGGTGCAGTAGG	.	56	24	73	0	.	1924	A	25467466	C	A	25467466	3	1	45	1	0	0	0	0	1	0	0	0	4676	710	25	3	1168	3	DNMT3A	2	25467466	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		25467466	217731907	14	6499											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25467523	25467523	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNMT3A	NM_153759	exon11	c.988-2A>G	.	CAGTTCTAGACAG	.	35	21	62	0	.	1924	C	25467523	T	C	25467523	5	2	45	1	0	0	0	0	0	0	1	0	4676	1536	53	2	1225	2	DNMT3A	2	25467523	Splice_Site	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	57	25467523	217731850	15	6500											
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74751076	74751076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DQX1	NM_133637	exon4	c.G790A	p.V264M	CTAGCACATCTCC	.	68	26	102	0	.	92	T	74751076	C	T	74751076	3	4	45	1	0	0	0	0	1	0	0	0	4751	478	17	3	1399	3	DQX1	2	74751076	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	49283553	74751076	168448297	16	6501											
HTRA2	27429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74757927	74757927	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HTRA2	NM_013247	exon2	c.A690G	p.A230A	CATCGCAACGCTG	.	49	25	64	0	.	91	G	74757927	A	G	74757927	2	3	45	1	0	0	0	0	0	0	0	1	7454	117	5	2		2	HTRA2	2	74757927	Silent	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	6851	74757927	168441446	17	6502											
POLR1A	25885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86265979	86265979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	POLR1A	NM_015425	exon27	c.T3878G	p.V1293G	TGCAACACCTGGA	.	55	24	92	2	.	93	C	86265979	A	C	86265979	3	2	45	1	0	0	0	0	1	0	0	0	12209	173	6	5	1316	5	POLR1A	2	86265979	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	11508052	86265979	156933394	18	6503											
ACTR1B	10120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98275016	98275016	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ACTR1B	NM_005735	exon6	c.T531G	p.P177P	GGAGTGAGGCATG	.	69	33	96	0	.	91	C	98275016	A	C	98275016	2	2	45	1	0	0	0	0	0	0	0	1	210	291	11	5		5	ACTR1B	2	98275016	Silent	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	12009037	98275016	144924357	19	6504											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141665624	141665624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRP1B	NM_018557	exon22	c.G3342T	p.W1114C	ACACACCCATGCT	.	183	96	151	0	.	311	A	141665624	C	A	141665624	3	1	45	1	0	0	0	0	1	0	0	0	8955	624	22	3	10737	3	LRP1B	2	141665624	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	43390608	141665624	101533749	20	6505											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179496878	179496878	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TTN	NM_001267550	exon236	c.G43743A	p.V14581V	ACCAAGCACAGTG	.	59	32	64	0	.	636	T	179496878	C	T	179496878	2	4	45	1	0	0	0	0	0	0	0	1	16732	697	25	3		3	TTN	2	179496878	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	37831254	179496878	63702495	21	6506											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182323028	182323028	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ITGA4	NM_000885	exon2	c.C303T	p.C101C	GACGTGCGAACAG	.	117	44	140	0	.	230	T	182323028	C	T	182323028	2	4	45	1	0	0	0	0	0	0	0	1	7878	776	27	1		1	ITGA4	2	182323028	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	2826150	182323028	60876345	22	6507											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	164	41	188	0	.	24361	T	41266098	A	T	41266098	3	4	45	1	0	0	0	0	1	0	0	0	4016	275	10	4	101	4	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10		41266098	156756332	23	6508											
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47449186	47449186	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTPN23	NM_015466	exon13	c.1004-1G>T	.	CCCCCAGGAGCCC	.	91	54	91	0	.	227	T	47449186	G	T	47449186	5	4	45	1	0	0	0	0	0	0	1	0	12788	1014	35	3	1053	3	PTPN23	3	47449186	Splice_Site	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	6183088	47449186	150573244	24	6509											
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49759578	49759578	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GMPPB	NM_021971	exon8	c.C771T	p.D257D	ACTTGGGTCCTGA	.	69	25	76	0	.	90	A	49759578	G	A	49759578	2	1	45	1	0	0	0	0	0	0	0	1	6495	1252	44	3		3	GMPPB	3	49759578	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	2310392	49759578	148262852	25	6510											
SEMA3B	7869	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	50313044	50313044	+	RNA	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SEMA3B	.	.	.	.	GCTCCGGAGGTGA	.	159	43	189	0	.	840	C	50313044	G	C	50313044	1	2	45	0	1	0	0	0	0	0	0	0	14025	1174	41	4		4	SEMA3B	3	50313044	RNA	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	553466	50313044	147709386	26	6511											
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57271521	57271521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	APPL1	NM_012096	exon3	c.A155G	p.N52S	CATAGAATGAATT	.	469	149	548	0	.	153	G	57271521	A	G	57271521	3	3	45	1	0	0	0	0	1	0	0	0	817	115	4	2	165	2	APPL1	3	57271521	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	6958477	57271521	140750909	27	6512											
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112732231	112732231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C3orf17	NM_015412	exon4	c.A361G	p.T121A	CTTTGGTAGTTAA	.	541	335	544	0	.	90	C	112732231	T	C	112732231	3	2	45	1	0	0	0	0	1	0	0	0	2210	1638	57	2	1366	2	C3orf17	3	112732231	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	55460710	112732231	85290199	28	6513											
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168806927	168806927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MECOM	NM_004991	exon16	c.A3446G	p.H1149R	CTTATATGATCTA	.	123	74	111	0	.	853	C	168806927	T	C	168806927	3	2	45	1	0	0	0	0	1	0	0	0	9422	1464	51	2	281	2	MECOM	3	168806927	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	56074696	168806927	29215503	29	6514											
NCEH1	57552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172351796	172351796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NCEH1	NM_001146276	exon5	c.A816G	p.P272P	ATAAGATGGTGTG	.	134	42	121	0	.	90	C	172351796	T	C	172351796	2	2	45	1	0	0	0	0	0	0	0	1	10215	1451	51	2		2	NCEH1	3	172351796	Silent	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	3544869	172351796	25670634	30	6515											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724307	30724307	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCDH7	NM_032457	exon1	c.G1263T	p.G421G	GATTGGGCGCATC	.	150	57	189	0	.	229	T	30724307	G	T	30724307	2	4	45	1	0	0	0	0	0	0	0	1	11516	1190	42	3		3	PCDH7	4	30724307	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10		30724307	160429969	31	6516											
PDHA2	5161	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762058	96762058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDHA2	NM_005390	exon1	c.G757A	p.D253N	AAGGTCGATGGAA	.	39	21	69	1	.	90	A	96762058	G	A	96762058	3	1	45	1	0	0	0	0	1	0	0	0	11665	1058	37	1	759	1	PDHA2	4	96762058	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	66037751	96762058	94392218	32	6517											
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107845304	107845304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DKK2	NM_014421	exon4	c.C587T	p.A196V	TGACGAGCACAGC	.	127	55	206	0	.	661	A	107845304	G	A	107845304	3	1	45	1	0	0	0	0	1	0	0	0	4545	971	34	3	196	3	DKK2	4	107845304	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	11083246	107845304	83308972	33	6518											
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122251638	122251638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	QRFPR	NM_198179	exon5	c.G838T	p.A280S	AGAGAGCCACCAC	.	64	27	119	0	.	90	A	122251638	C	A	122251638	3	1	45	1	0	0	0	0	1	0	0	0	12878	739	26	3	465	3	QRFPR	4	122251638	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	14406334	122251638	68902638	34	6519											
SH3RF1	57630	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170077719	170077719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SH3RF1	NM_020870	exon3	c.G505A	p.E169K	AATTTTCATCCAC	.	93	36	140	1	.	567	T	170077719	C	T	170077719	3	4	45	1	0	0	0	0	1	0	0	0	14258	835	29	3	2201	3	SH3RF1	4	170077719	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	47826081	170077719	21076557	35	6520											
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126774132	126774132	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MEGF10	NM_032446	exon18	c.A2106C	p.P702P	TTCAGCATGTCCA	.	95	28	76	0	.	94	C	126774132	A	C	126774132	2	2	45	1	0	0	0	0	0	0	0	1	9460	231	8	5		5	MEGF10	5	126774132	Silent	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10		126774132	54141128	36	6521											
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140476384	140476385	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	p.QP670HA	CTCCCAGCCCTAC	.	22	9	17	0	.	.	TG	140476385	GC	TG	140476384	3	4	45	1	0	0	0	0	1	0	0	0	11542	962	34	3	2012	3	PCDHB2	5	140476384	Missense_Mutation	DNP	GC	TCGA-CC-A7IL-01A-11D-A33Q-10	13702252	140476384	40438876	37	6522											
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798888	140798888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCDHGB7	NM_018927	exon1	c.T1462G	p.S488A	CGTGTCTCCTACT	.	111	50	86	0	.	29	G	140798888	T	G	140798888	3	3	45	1	0	0	0	0	1	0	0	0	11568	1551	54	5	1464	5	PCDHGB7	5	140798888	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	322504	140798888	40116372	38	6523											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27419760	27419760	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF184	NM_007149	exon6	c.A1578G	p.Q526Q	TTTCTCTTGAGTA	.	107	28	51	0	.	91	C	27419760	T	C	27419760	2	2	45	1	0	0	0	0	0	0	0	1	17748	1606	56	2		2	ZNF184	6	27419760	Silent	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10		27419760	143695307	39	6524											
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29797329	29797329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HLA-G	NM_002127	exon5	c.G754T	p.V252L	CAGGACGTGGAGC	.	172	44	81	0	.	517	T	29797329	G	T	29797329	3	4	45	1	0	0	0	0	1	0	0	0	7212	1145	40	1	768	1	HLA-G	6	29797329	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	2377569	29797329	141317738	40	6525											
TUBB	203068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30691141	30691162	+	Frame_Shift_Del	DEL	GGGCCAAAGGCCACTACACAGA	GGGCCAAAGGCCACTACACAGA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	GGGCCAAAGGCCACTACACAGA	GGGCCAAAGGCCACTACACAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TUBB	NM_178014	exon4	c.302_323del	p.101_108del	ACAACTGGGCCAA	.	295	38	192	0	.	91	-	30691162	GGGCCAAAGGCCACTACACAGA	-	30691141	7	5	45	1	0	1	0	1	0	0	0	0	16749	1357	47	0	316	0	TUBB	6	30691141	Frame_Shift_Del	DEL	GGGCCAAAGGCCACTACACAGA	TCGA-CC-A7IL-01A-11D-A33Q-10	893812	30691141	140423926	41	6526											
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43039049	43039049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KLC4	NM_201523	exon9	c.G1246T	p.A416S	GCTGAGGCTGAGA	.	186	123	107	0	.	94	T	43039049	G	T	43039049	3	4	45	1	0	0	0	0	1	0	0	0	8336	1203	42	3	1349	3	KLC4	6	43039049	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	12347908	43039049	128076018	42	6527											
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024770	76024770	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FILIP1	NM_015687	exon5	c.C778T	p.Q260X	CAAGTTGTTCAAT	.	47	42	80	0	.	94	A	76024770	G	A	76024770	4	1	45	1	0	0	0	0	0	1	0	0	5894	1386	48	3	2871	3	FILIP1	6	76024770	Nonsense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	32985721	76024770	95090297	43	6528											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	121434235	121434235	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C6orf170	NM_152730	exon28	c.C3142T	p.Q1048X	TTTGCTGCTGTTT	.	89	79	183	0	.	92	A	121434235	G	A	121434235	4	1	45	1	0	0	0	0	0	1	0	0	2344	1328	46	3	651	3	C6orf170	6	121434235	Nonsense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	45409465	121434235	49680832	44	6529											
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130374111	130374111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	L3MBTL3	NM_032438	exon7	c.A557C	p.D186A	AGGAGGATGGAGA	.	72	61	81	0	.	96	C	130374111	A	C	130374111	3	2	45	1	0	0	0	0	1	0	0	0	8593	333	12	5	575	5	L3MBTL3	6	130374111	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	8939876	130374111	40740956	45	6530											
UST	10090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	149285691	149285691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	UST	NM_005715	exon5	c.C673A	p.R225S	GAGGAGCGCTACC	.	56	50	76	0	.	92	A	149285691	C	A	149285691	3	1	45	1	0	0	0	0	1	0	0	0	17090	768	27	1	691	1	UST	6	149285691	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	18911580	149285691	21829376	46	6531											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44573141	44573141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPC1L1	NM_001101648	exon8	c.G2298A	p.M766I	AGCTGGCATGGGG	.	190	112	188	0	.	94	T	44573141	C	T	44573141	3	4	45	1	0	0	0	0	1	0	0	0	10571	710	25	3	1833	3	NPC1L1	7	44573141	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		44573141	114565522	47	6532											
GNAT3	346562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80123960	80123960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GNAT3	NM_001102386	exon2	c.C122T	p.A41V	TCTCCTGCTCCTG	.	316	103	296	0	.	23	A	80123960	G	A	80123960	3	1	45	1	0	0	0	0	1	0	0	0	6513	1319	46	3	968	3	GNAT3	7	80123960	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	35550819	80123960	79014703	48	6533											
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95705439	95705439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DYNC1I1	NM_004411	exon15	c.A1631G	p.H544R	CCGTGCATCCTGC	.	89	66	101	0	.	94	G	95705439	A	G	95705439	3	3	45	1	0	0	0	0	1	0	0	0	4842	217	8	2	1685	2	DYNC1I1	7	95705439	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	15581479	95705439	63433224	49	6534											
PTN	5764	broad.mit.edu;ucsc.edu	37	7	136936111	136936111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTN	NM_002825	exon4	c.G317A	p.W106X	TCTCCCCAGGCCT	.	123	39	142	1	.	516	T	136936111	C	T	136936111	4	4	45	1	0	0	0	0	0	1	0	0	12768	595	21	3	197	3	PTN	7	136936111	Nonsense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	41230672	136936111	22202552	50	6535											
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95399347	95399347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RAD54B	NM_012415	exon11	c.A1850G	p.K617R	AGACTCTTTTCTT	.	92	54	55	0	.	539	C	95399347	T	C	95399347	3	2	45	1	0	0	0	0	1	0	0	0	12992	1609	56	2	902	2	RAD54B	8	95399347	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10		95399347	50964675	51	6536											
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105511591	105511591	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRP12	NM_013437	exon4	c.G429T	p.S143S	GTCATCCGAATGA	.	147	41	96	0	.	90	A	105511591	C	A	105511591	2	1	45	1	0	0	0	0	0	0	0	1	8954	639	23	1		1	LRP12	8	105511591	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	10112244	105511591	40852431	52	6537											
EIF3H	8667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	117658834	117658834	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EIF3H	NM_003756	exon7	c.G837A	p.Q279Q	GCGACGCTGCTGA	.	50	20	60	0	.	658	T	117658834	C	T	117658834	2	4	45	1	0	0	0	0	0	0	0	1	5018	796	28	3		3	EIF3H	8	117658834	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	12147243	117658834	28705188	53	6538											
IFNA14	3448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21239412	21239412	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	IFNA14	NM_002172	exon1	c.523delC	p.L175fs	AAGAGAGGGATCT	.	130	45	159	0	.	68	-	21239412	G	-	21239412	7	5	45	1	0	1	0	1	0	0	0	0	7534	1000	35	0	50	0	IFNA14	9	21239412	Frame_Shift_Del	DEL	G	TCGA-CC-A7IL-01A-11D-A33Q-10		21239412	119974019	54	6539											
EXOSC3	51010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37783971	37783971	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EXOSC3	NM_016042	exon2	c.A414G	p.P138P	AGAAGCTGGCTCA	.	41	17	82	0	.	135	C	37783971	T	C	37783971	2	2	45	1	0	0	0	0	0	0	0	1	5316	1567	55	2		2	EXOSC3	9	37783971	Silent	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	16544559	37783971	103429460	55	6540											
HNRNPK	3190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86585154	86585154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HNRNPK	NM_031262	exon16	c.A1284C	p.E428D	GGATCCTTCTAAA	.	46	18	52	1	.	227	G	86585154	T	G	86585154	3	3	45	1	0	0	0	0	1	0	0	0	7269	1606	56	5	153	5	HNRNPK	9	86585154	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	48801183	86585154	54628277	56	6541											
NR4A3	8013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	102595735	102595735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NR4A3	NM_173200	exon6	c.G1286C	p.R429T	ATTCCAGAGTAAG	.	108	48	123	0	.	186	C	102595735	G	C	102595735	3	2	45	1	0	0	0	0	1	0	0	0	10634	956	33	4	1300	4	NR4A3	9	102595735	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	16010581	102595735	38617696	57	6542											
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116268749	116268749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RGS3	NM_144488	exon13	c.G1061A	p.C354Y	GGAAATGTGTGGA	.	176	64	307	0	.	227	A	116268749	G	A	116268749	3	1	45	1	0	0	0	0	1	0	0	0	13306	1377	48	3	1248	3	RGS3	9	116268749	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	13673014	116268749	24944682	58	6543											
NPFFR1	64106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72015502	72015502	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPFFR1	NM_022146	exon4	c.G504T	p.L168L	CAGCGCCAGGGCC	.	97	32	105	0	.	22	A	72015502	C	A	72015502	2	1	45	1	0	0	0	0	0	0	0	1	10577	581	21	3		3	NPFFR1	10	72015502	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		72015502	63519245	59	6544											
PRF1	5551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72360312	72360312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRF1	NM_001083116	exon2	c.C347A	p.A116D	GCCACAGCTTCAG	.	65	20	88	0	.	578	T	72360312	G	T	72360312	3	4	45	1	0	0	0	0	1	0	0	0	12478	971	34	3	1328	3	PRF1	10	72360312	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	344810	72360312	63174435	60	6545											
KCNIP2	30819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	103589645	103589645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KCNIP2	NM_014591	exon3	c.C224A	p.A75D	GCTGGGGCGGCTA	.	28	13	39	0	.	90	T	103589645	G	T	103589645	3	4	45	1	0	0	0	0	1	0	0	0	8040	1203	42	3	733	3	KCNIP2	10	103589645	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	31229333	103589645	31945102	61	6546											
PCGF6	84108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105104793	105104793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCGF6	NM_001011663	exon6	c.T770C	p.L257P	AACTCCAGTAATA	.	142	44	171	0	.	226	G	105104793	A	G	105104793	3	3	45	1	0	0	0	0	1	0	0	0	11578	188	7	2	302	2	PCGF6	10	105104793	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	1515148	105104793	30429954	62	6547											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124335940	124335940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DMBT1	NM_007329	exon7	c.G309T	p.R103S	CCTGAGGCTGGTG	.	37	13	30	0	.	494	T	124335940	G	T	124335940	3	4	45	1	0	0	0	0	1	0	0	0	4577	1194	42	3	335	3	DMBT1	10	124335940	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	19231147	124335940	11198807	63	6548											
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126714944	126714944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CTBP2	NM_022802	exon1	c.C1385T	p.A462V	GTCAAGGCCACCC	.	58	36	67	0	.	90	A	126714944	G	A	126714944	3	1	45	1	0	0	0	0	1	0	0	0	3998	1203	42	3	1608	3	CTBP2	10	126714944	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	2379004	126714944	8819803	64	6549											
MICAL2	9645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12183718	12183718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MICAL2	NM_014632	exon3	c.G16T	p.D6Y	AACGAGGATGAGA	.	84	61	92	1	.	92	T	12183718	G	T	12183718	3	4	45	1	0	0	0	0	1	0	0	0	9570	1174	41	3	18	3	MICAL2	11	12183718	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10		12183718	122822798	65	6550											
SHANK2	22941	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70666634	70666634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SHANK2	.	.	.	.	AGGCTGCGGTGCG	.	45	15	62	0	.	94	A	70666634	C	A	70666634	3	1	45	1	0	0	0	0	1	0	0	0	14265	768	27	1	4370	1	SHANK2	11	70666634	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	58482916	70666634	64339882	66	6551											
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810594	106810594	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GUCY1A2	NM_000855	exon4	c.G798T	p.V266V	CACTTCCACATCC	.	71	50	88	0	.	589	A	106810594	C	A	106810594	2	1	45	1	0	0	0	0	0	0	0	1	6893	581	21	3		3	GUCY1A2	11	106810594	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	36143960	106810594	28195922	67	6552											
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123600474	123600474	+	Silent	SNP	C	C	A	rs143645376	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF202	NM_003455	exon5	c.G462T	p.V154V	AGGCTCCACTCCT	.	51	11	72	0	C|0.998;T|0.002	91	A	123600474	C	A	123600474	2	1	45	1	0	0	0	0	0	0	0	1	17760	581	21	3		3	ZNF202	11	123600474	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	16789880	123600474	11406042	68	6553											
GALNT8	26290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	4848403	4848403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GALNT8	NM_017417	exon3	c.C584G	p.S195C	CTCTGTCCATTAT	.	75	37	112	0	.	230	G	4848403	C	G	4848403	3	3	45	1	0	0	0	0	1	0	0	0	6219	855	30	4	594	4	GALNT8	12	4848403	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		4848403	129003492	69	6554											
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8988264	8988264	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	A2ML1	NM_144670	exon6	c.643+2T>C	.	ATATGGTAGGTGG	.	80	32	133	0	.	93	C	8988264	T	C	8988264	5	2	45	1	0	0	0	0	0	0	1	0	5	1652	57	2	667	2	A2ML1	12	8988264	Splice_Site	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	4139861	8988264	124863631	70	6555											
PDE3A	5139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20807109	20807109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDE3A	NM_000921	exon15	c.G3154A	p.E1052K	AATGAAGAGGAAA	.	95	43	149	1	.	94	A	20807109	G	A	20807109	3	1	45	1	0	0	0	0	1	0	0	0	11637	943	33	3	3212	3	PDE3A	12	20807109	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	11818845	20807109	113044786	71	6556											
HOXC6	3223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54423561	54423561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HOXC6	NM_004503	exon2	c.G523T	p.A175S	GAGATCGCCAACG	.	50	25	86	0	.	93	T	54423561	G	T	54423561	3	4	45	1	0	0	0	0	1	0	0	0	7315	1087	38	1	529	1	HOXC6	12	54423561	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	33616452	54423561	79428334	72	6557											
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57971812	57971812	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KIF5A	NM_004984	exon22	c.C2382A	p.L794L	GACCCTCCACAAC	.	57	22	83	2	.	517	A	57971812	C	A	57971812	2	1	45	1	0	0	0	0	0	0	0	1	8305	842	30	3		3	KIF5A	12	57971812	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	3548251	57971812	75880083	73	6558											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	59284530	59284539	+	Frame_Shift_Del	DEL	AAACTCTTTC	AAACTCTTTC	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	AAACTCTTTC	AAACTCTTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRIG3	NM_153377	exon4	c.423_432del	p.141_144del	GGACTGAAACTCT	.	49	12	86	0	.	229	-	59284539	AAACTCTTTC	-	59284530	7	5	45	1	0	1	0	1	0	0	0	0	8946	243	9	0	2991	0	LRIG3	12	59284530	Frame_Shift_Del	DEL	AAACTCTTTC	TCGA-CC-A7IL-01A-11D-A33Q-10	1312718	59284530	74567365	74	6559											
SMAD9	4093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37446983	37446983	+	Missense_Mutation	SNP	C	C	A	rs200651392	alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SMAD9	NM_005905	exon3	c.G482T	p.R161L	GCGCTGCGGAACT	.	65	22	89	0	C|0.999;T|0.001	414	A	37446983	C	A	37446983	3	1	45	1	0	0	0	0	1	0	0	0	14764	768	27	1	941	1	SMAD9	13	37446983	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		37446983	77722895	75	6560											
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	72049330	72049330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DACH1	NM_080759	exon10	c.C2032A	p.P678T	TCTCTGGGGTCAG	.	59	26	103	0	.	135	T	72049330	G	T	72049330	3	4	45	1	0	0	0	0	1	0	0	0	4220	1232	43	3	102	3	DACH1	13	72049330	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	34602347	72049330	43120548	76	6561											
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23456717	23456717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C14orf93	NM_021944	exon7	c.G1324A	p.A442T	GGCGGGCCACCCA	.	72	49	62	0	.	91	T	23456717	C	T	23456717	3	4	45	1	0	0	0	0	1	0	0	0	1782	739	26	3	296	3	C14orf93	14	23456717	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		23456717	83892823	77	6562											
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35871694	35871694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NFKBIA	NM_020529	exon5	c.A812T	p.Q271L	GTCAGCTGGCCCA	.	91	35	106	0	.	721	A	35871694	T	A	35871694	3	1	45	1	0	0	0	0	1	0	0	0	10377	1580	55	4	149	4	NFKBIA	14	35871694	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	12414977	35871694	71477846	78	6563											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63174666	63174667	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	p.ED842DY	TGGGGTCCTCAGA	.	117	66	111	0	.	.	AG	63174667	CC	AG	63174666	3	1	45	1	0	0	0	0	1	0	0	0	8035	855	30	3	443	3	KCNH5	14	63174666	Missense_Mutation	DNP	CC	TCGA-CC-A7IL-01A-11D-A33Q-10	27302972	63174666	44174874	79	6564											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68273376	68273376	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZFYVE26	NM_015346	exon6	c.A903G	p.L301L	AGGATCTAGATGA	.	80	47	95	0	.	162	C	68273376	T	C	68273376	2	2	45	1	0	0	0	0	0	0	0	1	17665	1509	53	2		2	ZFYVE26	14	68273376	Silent	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	5098710	68273376	39076164	80	6565											
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92472209	92472209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TRIP11	NM_004239	exon11	c.C2111A	p.S704Y	TCCAGAGAAAGCT	.	114	40	131	0	.	1400	T	92472209	G	T	92472209	3	4	45	1	0	0	0	0	1	0	0	0	16552	942	33	3	3872	3	TRIP11	14	92472209	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	24198833	92472209	14877331	81	6566											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889234	23889234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_019066	exon1	c.C3656T	p.A1219V	GCGAGCGCTTCAA	.	67	35	81	0	.	.	A	23889234	G	A	23889234	3	1	45	1	0	0	0	0	1	0	0	0	9189	1087	38	1	97	1	MAGEL2	15	23889234	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10		23889234	78642158	82	6567											
DNAJC17	55192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41060161	41060161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNAJC17	NM_018163	exon11	c.G892A	p.D298N	CCTGGTCTTCCTG	.	21	16	14	0	.	226	T	41060161	C	T	41060161	3	4	45	1	0	0	0	0	1	0	0	0	4636	913	32	3	26	3	DNAJC17	15	41060161	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	17170927	41060161	61471231	83	6568											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48888574	48888574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FBN1	NM_000138	exon6	c.T444C	p.P148P	ACAAACAGCTGTA	.	55	11	63	0	.	92	G	48888574	A	G	48888574	2	3	45	1	0	0	0	0	0	0	0	1	5702	202	7	2		2	FBN1	15	48888574	Silent	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	7828413	48888574	53642818	84	6569											
TRIP4	9325	hgsc.bcm.edu;bcgsc.ca	37	15	64686298	64686298	+	Missense_Mutation	SNP	G	G	T	rs115051562	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TRIP4	NM_016213	exon2	c.G255T	p.Q85H	GCAGCAGTGCTTC	.	155	8	180	0	G|0.986;A|0.014	188	T	64686298	G	T	64686298	3	4	45	1	0	0	0	0	1	0	0	0	16555	1020	36	3	261	3	TRIP4	15	64686298	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	15797724	64686298	37845094	85	6570											
TMC3	342125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	81637267	81637267	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMC3	NM_001080532	exon13	c.G1358C	p.W453S	GTGGACCATTTCT	.	148	13	155	0	.	70	G	81637267	C	G	81637267	3	3	45	1	0	0	0	0	1	0	0	0	15983	595	21	4	1984	4	TMC3	15	81637267	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	16950969	81637267	20894125	86	6571											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	9934503	9934503	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GRIN2A	NM_001134407	exon8	c.1651+1G>T	.	CACACACCTAGAA	.	137	41	138	0	.	349	A	9934503	C	A	9934503	5	1	45	1	0	0	0	0	0	0	1	0	6779	521	18	3	2770	3	GRIN2A	16	9934503	Splice_Site	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		9934503	80420250	87	6572											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19049311	19049311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMC7	NM_024847	exon8	c.G1121A	p.G374E	TTTTAGGGGCATG	.	80	26	108	0	.	93	A	19049311	G	A	19049311	3	1	45	1	0	0	0	0	1	0	0	0	15987	1232	43	3	1151	3	TMC7	16	19049311	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	9114808	19049311	71305442	88	6573											
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22149725	22149725	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	VWA3A	NM_173615	exon22	c.A2184G	p.V728V	AAAAGTACTGGGA	.	62	37	85	0	.	1	G	22149725	A	G	22149725	2	3	45	1	0	0	0	0	0	0	0	1	17237	378	14	2		2	VWA3A	16	22149725	Silent	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	3100414	22149725	68205028	89	6574											
SCNN1G	6340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23226546	23226546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SCNN1G	NM_001039	exon13	c.C1706A	p.A569D	AGAAAGCCAAGGA	.	64	43	53	0	.	158	A	23226546	C	A	23226546	3	1	45	1	0	0	0	0	1	0	0	0	13930	739	26	3	1752	3	SCNN1G	16	23226546	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	1076821	23226546	67128207	90	6575											
AMFR	267	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	56396835	56396835	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AMFR	NM_001144	exon14	c.C1918T	p.Q640X	TCTGCTGCTTCTG	.	34	5	55	0	.	1009	A	56396835	G	A	56396835	4	1	45	1	0	0	0	0	0	1	0	0	571	1328	46	3	17	3	AMFR	16	56396835	Nonsense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	33170289	56396835	33957918	91	6576											
CES2	8824	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	66976621	66976621	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CES2	NM_003869	exon10	c.G1545A	p.P515P	GCCACCGCACATG	.	99	31	76	0	.	90	A	66976621	G	A	66976621	2	1	45	1	0	0	0	0	0	0	0	1	3270	1074	38	1		1	CES2	16	66976621	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	10579786	66976621	23378132	92	6577											
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67650677	67650677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CTCF	NM_006565	exon5	c.G982T	p.D328Y	GACTGCGACATGG	.	134	36	112	0	.	91	T	67650677	G	T	67650677	3	4	45	1	0	0	0	0	1	0	0	0	4000	1058	37	1	992	1	CTCF	16	67650677	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	674056	67650677	22704076	93	6578											
ZNF23	7571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71482852	71482852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF23	NM_145911	exon6	c.C1076G	p.T359R	TCTCCTGTGTGGA	.	60	23	77	0	.	90	C	71482852	G	C	71482852	3	2	45	1	0	0	0	0	1	0	0	0	17780	1377	48	4	859	4	ZNF23	16	71482852	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	3832175	71482852	18871901	94	6579											
CRISPLD2	83716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84884214	84884214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CRISPLD2	NM_031476	exon5	c.A533G	p.N178S	CTGTGAACACCTG	.	85	20	96	0	.	90	G	84884214	A	G	84884214	3	3	45	1	0	0	0	0	1	0	0	0	3883	43	2	2	547	2	CRISPLD2	16	84884214	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	13401362	84884214	5470539	95	6580											
KRTAP4-7	100132476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39240735	39240735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_033061	exon1	c.A277C	p.S93R	ATGTCCAGCTGCT	.	40	34	21	0	.	.	C	39240735	A	C	39240735	3	2	45	1	0	0	0	0	1	0	0	0	8555	188	7	5	279	5	KRTAP4-7	17	39240735	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10		39240735	41954475	96	6581											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	763554	763554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C19orf21	NM_173481	exon5	c.G2004T	p.W668C	GCGCTGGGAATCC	.	26	12	43	0	.	91	T	763554	G	T	763554	3	4	45	1	0	0	0	0	1	0	0	0	1913	1241	43	3	2018	3	C19orf21	19	763554	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10		763554	58365429	97	6582											
PRKCSH	5589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11553327	11553327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRKCSH	NM_001001329	exon7	c.G595A	p.E199K	CTGTGGGAAGGTA	.	40	16	66	0	.	90	A	11553327	G	A	11553327	3	1	45	1	0	0	0	0	1	0	0	0	12516	1175	41	3	617	3	PRKCSH	19	11553327	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	10789773	11553327	47575656	98	6583											
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15918704	15918704	+	Silent	SNP	G	G	A	rs61729383	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR10H1	NM_013940	exon1	c.C144T	p.T48T	CCAGACGGTGGCC	.	63	23	138	0	G|0.810;A|0.190	68	A	15918704	G	A	15918704	2	1	45	1	0	0	0	0	0	0	0	1	10905	1103	39	1		1	OR10H1	19	15918704	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	4365377	15918704	43210279	99	6584											
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	32845521	32845524	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF507	NM_001136156	exon3	c.1785_1788del	p.595_596del	ATTGAGAGAAAGG	.	72	37	116	0	.	230	-	32845524	AGAA	-	32845521	7	5	45	1	0	1	0	1	0	0	0	0	17950	301	11	0	1787	0	ZNF507	19	32845521	Frame_Shift_Del	DEL	AGAA	TCGA-CC-A7IL-01A-11D-A33Q-10	16926817	32845521	26283462	100	6585											
PDCD2L	84306	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	34895344	34895344	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDCD2L	NM_032346	exon1	c.C9G	p.A3A	GGCGGCCGTTCTG	.	20	7	39	0	.	91	G	34895344	C	G	34895344	2	3	45	1	0	0	0	0	0	0	0	1	11620	639	23	4		4	PDCD2L	19	34895344	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	2049823	34895344	24233639	101	6586											
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38028629	38028629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF793	NM_001013659	exon8	c.C1069T	p.H357Y	AATAAACATTGGA	.	51	18	98	0	.	68	T	38028629	C	T	38028629	3	4	45	1	0	0	0	0	1	0	0	0	18162	478	17	3	1083	3	ZNF793	19	38028629	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	3133285	38028629	21100354	102	6587											
TIMM50	92609	ucsc.edu;bcgsc.ca	37	19	39972655	39972655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TIMM50	NM_001001563	exon2	c.A550G	p.S184G	ACTGTGAGCGTCG	.	37	5	44	0	.	91	G	39972655	A	G	39972655	3	3	45	1	0	0	0	0	1	0	0	0	15910	304	11	2	556	2	TIMM50	19	39972655	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10	1944026	39972655	19156328	103	6588											
FCGBP	8857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40433334	40433334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FCGBP	NM_003890	exon2	c.G935T	p.G312V	TGGATGCCCACAT	.	18	7	45	0	.	98	A	40433334	C	A	40433334	3	1	45	1	0	0	0	0	1	0	0	0	5778	739	26	3	15422	3	FCGBP	19	40433334	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	460679	40433334	18695649	104	6589											
CKM	1158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45810804	45810804	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CKM	NM_001824	exon7	c.C882A	p.G294G	ATGCACGCCTCCA	.	42	16	65	0	.	91	T	45810804	G	T	45810804	2	4	45	1	0	0	0	0	0	0	0	1	3448	1074	38	1		1	CKM	19	45810804	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	5377470	45810804	13318179	105	6590											
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49962955	49962955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ALDH16A1	NM_001145396	exon4	c.C349T	p.R117W	CACCAGCGGCTGC	.	65	27	90	0	.	91	T	49962955	C	T	49962955	3	4	45	1	0	0	0	0	1	0	0	0	488	759	27	1	363	1	ALDH16A1	19	49962955	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	4152151	49962955	9166028	106	6591											
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56372857	56372857	+	Silent	SNP	C	C	A	rs200258143	alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NLRP4	NM_134444	exon4	c.C1962A	p.T654T	GTCGACCTTTGTG	.	43	20	85	0	C|0.999;G|0.000	216	A	56372857	C	A	56372857	2	1	45	1	0	0	0	0	0	0	0	1	10479	668	24	3		3	NLRP4	19	56372857	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	6409902	56372857	2756126	107	6592											
ZIM3	114026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57647323	57647323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZIM3	NM_052882	exon5	c.C382T	p.P128S	CCAGTGGAAGTAT	.	84	40	146	0	.	92	A	57647323	G	A	57647323	3	1	45	1	0	0	0	0	1	0	0	0	17682	1174	41	3	1040	3	ZIM3	19	57647323	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	1274466	57647323	1481660	108	6593											
ZNF417	147687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58420786	58420786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF417	NM_152475	exon3	c.A860T	p.Q287L	ACTCGCTGATGTT	.	188	72	270	0	.	90	A	58420786	T	A	58420786	3	1	45	1	0	0	0	0	1	0	0	0	17891	1580	55	4	871	4	ZNF417	19	58420786	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	773463	58420786	708197	109	6594											
ZSCAN18	65982	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58597611	58597611	+	Silent	SNP	G	G	A	rs147947490	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZSCAN18	NM_001145542	exon6	c.C936T	p.D312D	GGCAGCGTCAGGC	.	102	48	208	0	G|0.993;C|0.007	90	A	58597611	G	A	58597611	2	1	45	1	0	0	0	0	0	0	0	1	18227	1136	40	1		1	ZSCAN18	19	58597611	Silent	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	176825	58597611	531372	110	6595											
A1BG	1	ucsc.edu;mdanderson.org	37	19	58864479	58864479	+	Missense_Mutation	SNP	C	C	A	rs893184	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	A1BG	NM_130786	exon3	c.A155T	p.H52L	TCCAGGTGGGCCT	.	47	19	69	0	C|0.873;T|0.127	90	A	58864479	C	A	58864479	3	1	45	1	0	0	0	0	1	0	0	0	1	1696	59	4	1356	4	A1BG	19	58864479	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	266868	58864479	264504	111	6596											
UBOX5	22888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3102887	3102887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	UBOX5	NM_014948	exon3	c.A398G	p.H133R	CCCCTGTGGCTAA	.	47	25	92	1	.	227	C	3102887	T	C	3102887	3	2	45	1	0	0	0	0	1	0	0	0	16891	1696	59	2	1239	2	UBOX5	20	3102887	Missense_Mutation	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10		3102887	59922633	112	6597											
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23584366	23584366	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CST9	NM_001008693	exon2	c.A261T	p.R87R	CTTACCTCGCCAC	.	33	16	41	0	.	91	A	23584366	T	A	23584366	2	1	45	1	0	0	0	0	0	0	0	1	3979	1538	54	4		4	CST9	20	23584366	Silent	SNP	T	TCGA-CC-A7IL-01A-11D-A33Q-10	20481479	23584366	39441154	113	6598											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40049157	40049157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CHD6	NM_032221	exon31	c.C6118T	p.H2040Y	GACTATGGCAGTT	.	39	8	36	0	.	238	A	40049157	G	A	40049157	3	1	45	1	0	0	0	0	1	0	0	0	3329	1348	47	3	2057	3	CHD6	20	40049157	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	16464791	40049157	22976363	114	6599											
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38865317	38865317	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DYRK1A	NM_101395	exon9	c.952-2A>T	.	TATTTCAGATATA	.	62	31	68	0	.	792	T	38865317	A	T	38865317	5	4	45	1	0	0	0	0	0	0	1	0	4854	202	7	4	976	4	DYRK1A	21	38865317	Splice_Site	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10		38865317	9264578	115	6600											
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22277762	22277762	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PPM1F	NM_014634	exon8	c.G1068A	p.L356L	GGCAAGCAGCAGG	.	139	52	106	0	.	292	T	22277762	C	T	22277762	2	4	45	1	0	0	0	0	0	0	0	1	12339	697	25	3		3	PPM1F	22	22277762	Silent	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10		22277762	29026804	116	6601											
ARSF	416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3019189	3019189	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ARSF	NM_004042	exon8	c.A1029G	p.T343T	CTTTACATCAGAT	.	131	110	276	0	.	132	G	3019189	A	G	3019189	2	3	45	1	0	0	0	0	0	0	0	1	991	204	8	2		2	ARSF	23	3019189	Silent	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10		3019189	152251371	117	6602											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23410846	23410846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTCHD1	NM_173495	exon3	c.G1211A	p.C404Y	TCTGCTGCAATTC	.	45	40	69	0	.	135	A	23410846	G	A	23410846	3	1	45	1	0	0	0	0	1	0	0	0	12732	1319	46	3	1221	3	PTCHD1	23	23410846	Missense_Mutation	SNP	G	TCGA-CC-A7IL-01A-11D-A33Q-10	20391657	23410846	131859714	118	6603											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134988645	134988645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SAGE1	NM_018666	exon7	c.C671G	p.T224S	TGTTGACTCTTCG	.	96	89	134	0	.	133	G	134988645	C	G	134988645	3	3	45	1	0	0	0	0	1	0	0	0	13809	565	20	4	693	4	SAGE1	23	134988645	Missense_Mutation	SNP	C	TCGA-CC-A7IL-01A-11D-A33Q-10	111577799	134988645	20281915	119	6604											
TBL1Y	90665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	6939610	6939610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_134258	exon10	c.A742C	p.T248P	GATGGAACACTAT	.	38	34	94	0	.	.	C	6939610	A	C	6939610	3	2	45	1	0	0	0	0	1	0	0	0	15638	43	2	5	764	5	TBL1Y	24	6939610	Missense_Mutation	SNP	A	TCGA-CC-A7IL-01A-11D-A33Q-10		6939610	52433956	120	6605											
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9097670	9097670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC2A5	NM_003039	exon12	c.T1481C	p.L494P	GGTGGAAGCTCTT	.	140	14	148	0	.	517	G	9097670	A	G	9097670	3	3	46	1	0	0	0	0	1	0	0	0	14548	72	3	2	28	2	SLC2A5	1	9097670	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10		9097670	240152951	1	6606											
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11562021	11562021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTCHD2	NM_020780	exon2	c.T972G	p.D324E	CAAGGATCTGCCG	.	84	11	97	0	.	209	G	11562021	T	G	11562021	3	3	46	1	0	0	0	0	1	0	0	0	12733	1432	50	5	974	5	PTCHD2	1	11562021	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	2464351	11562021	237688600	2	6607											
TMEM53	79639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45120780	45120780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM53	NM_024587	exon3	c.G285T	p.E95D	GAGCAGCTCGAGC	.	67	56	108	0	.	92	A	45120780	C	A	45120780	3	1	46	1	0	0	0	0	1	0	0	0	16176	796	28	3	552	3	TMEM53	1	45120780	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	33558759	45120780	204129841	3	6608											
INADL	10207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62237159	62237159	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INADL	NM_176877	exon6	c.A581T	p.D194V	CATTGGATCAGAA	.	753	83	829	1	.	94	T	62237159	A	T	62237159	3	4	46	1	0	0	0	0	1	0	0	0	7731	333	12	4	599	4	INADL	1	62237159	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	17116379	62237159	187013462	4	6609											
TGFBR3	7049	broad.mit.edu;bcgsc.ca	37	1	92187585	92187585	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TGFBR3	NM_001195684	exon9	c.T1002C	p.N334N	ATAGCCATTGTCC	.	213	14	241	0	.	93	G	92187585	A	G	92187585	2	3	46	1	0	0	0	0	0	0	0	1	15820	214	8	2		2	TGFBR3	1	92187585	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	29950426	92187585	157063036	5	6610											
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	108315394	108315394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VAV3	NM_006113	exon5	c.A518C	p.Y173S	TCCTCATAGACTT	.	179	16	185	0	.	1339	G	108315394	T	G	108315394	3	3	46	1	0	0	0	0	1	0	0	0	17130	1406	49	5	2142	5	VAV3	1	108315394	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	16127809	108315394	140935227	6	6611											
GDAP2	54834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118454654	118454654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GDAP2	NM_017686	exon5	c.G521A	p.R174H	TAACCACGTTTTG	.	354	273	433	0	.	92	T	118454654	C	T	118454654	3	4	46	1	0	0	0	0	1	0	0	0	6309	536	19	1	1057	1	GDAP2	1	118454654	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	10139260	118454654	130795967	7	6612											
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255314	156255314	+	Silent	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM79	NM_032323	exon2	c.A297T	p.P99P	TGAACCAGAGCCC	.	192	53	78	0	.	90	T	156255314	A	T	156255314	2	4	46	1	0	0	0	0	0	0	0	1	16200	175	7	4		4	TMEM79	1	156255314	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	37800660	156255314	92995307	8	6613											
INSRR	3645	broad.mit.edu;bcgsc.ca	37	1	156828412	156828412	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INSRR	NM_014215	exon1	c.T2A	p.M1K	ACTGCCATTGTCC	.	193	8	112	0	.	1403	T	156828412	A	T	156828412	3	4	46	1	0	0	0	0	1	0	0	0	7774	217	8	4	3978	4	INSRR	1	156828412	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	573098	156828412	92422209	9	6614											
ETV3L	440695	broad.mit.edu;bcgsc.ca	37	1	157062526	157062526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ETV3L	NM_001004341	exon5	c.C1001T	p.T334I	CTGCGGGTCTCTG	.	367	18	197	1	.	228	A	157062526	G	A	157062526	3	1	46	1	0	0	0	0	1	0	0	0	5280	1261	44	3	88	3	ETV3L	1	157062526	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	234114	157062526	92188095	10	6615											
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158059385	158059385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIRREL	NM_018240	exon9	c.G1138A	p.V380M	ATCGGAGTGGCTG	.	174	47	85	0	.	91	A	158059385	G	A	158059385	3	1	46	1	0	0	0	0	1	0	0	0	8324	1029	36	3	1172	3	KIRREL	1	158059385	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	996859	158059385	91191236	11	6616											
OR10T2	128360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158369189	158369189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR10T2	NM_001004475	exon1	c.A68G	p.E23G	TGGAGCTCCCCCA	.	182	17	99	0	.	70	C	158369189	T	C	158369189	3	2	46	1	0	0	0	0	1	0	0	0	10919	1551	54	2	878	2	OR10T2	1	158369189	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	309804	158369189	90881432	12	6617											
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172100413	172100413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNM3	NM_001136127	exon14	c.G1644C	p.W548C	GTCCTGGTATAAA	.	231	80	132	0	.	90	C	172100413	G	C	172100413	3	2	46	1	0	0	0	0	1	0	0	0	4673	1270	44	4	1698	4	DNM3	1	172100413	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	13731224	172100413	77150208	13	6618											
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183085929	183085929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LAMC1	NM_002293	exon8	c.A1455G	p.E485E	TCTGGAATCATCT	.	572	150	293	0	.	252	G	183085929	A	G	183085929	2	3	46	1	0	0	0	0	0	0	0	1	8614	98	4	2		2	LAMC1	1	183085929	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	10985516	183085929	66164692	14	6619											
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	186648333	186648333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTGS2	NM_000963	exon3	c.C170T	p.P57L	AATTCCGCTGCAA	.	581	35	291	0	.	227	A	186648333	G	A	186648333	3	1	46	1	0	0	0	0	1	0	0	0	12756	1101	38	1	1676	1	PTGS2	1	186648333	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	3562404	186648333	62602288	15	6620											
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186948491	186948491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLA2G4A	NM_024420	exon17	c.G2005T	p.D669Y	GACTTTGATATTT	.	603	205	401	1	.	721	T	186948491	G	T	186948491	3	4	46	1	0	0	0	0	1	0	0	0	12001	1290	45	3	2067	3	PLA2G4A	1	186948491	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	300158	186948491	62302130	16	6621											
ARL8A	127829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202104642	202104642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARL8A	NM_138795	exon5	c.G385C	p.G129R	TGTTACCCAGGAC	.	155	40	114	0	.	229	G	202104642	C	G	202104642	3	3	46	1	0	0	0	0	1	0	0	0	946	623	22	4	187	4	ARL8A	1	202104642	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	15156151	202104642	47145979	17	6622											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237905615	237905615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RYR2	NM_001035	exon80	c.A11111T	p.D3704V	AGGAAGATGACGA	.	364	70	219	0	.	158	T	237905615	A	T	237905615	3	4	46	1	0	0	0	0	1	0	0	0	13769	333	12	4	11429	4	RYR2	1	237905615	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	35800973	237905615	11345006	18	6623											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247024552	247024553	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AHCTF1	NM_015446	exon29	c.3808_3809insA	p.C1270fs	CTGCACATTTTTT	.	903	217	424	0	.	97	T	247024553	-	T	247024552	7	5	46	1	0	1	1	0	0	0	0	0	408	217	8	0	3051	0	AHCTF1	1	247024552	Frame_Shift_Ins	INS	-	TCGA-DD-A113-01A-11D-A12Z-10	9118937	247024552	2226069	19	6624											
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211815	249211815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PGBD2	NM_170725	exon3	c.G1032A	p.L344L	TTTTCTGCCATAT	.	386	89	169	0	.	91	A	249211815	G	A	249211815	2	1	46	1	0	0	0	0	0	0	0	1	11781	1306	46	3		3	PGBD2	1	249211815	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2187263	249211815	38806	20	6625											
MYT1L	23040	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1946902	1946902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYT1L	NM_015025	exon9	c.T357A	p.D119E	GTCCTCATCCCCT	.	634	28	546	1	.	95	T	1946902	A	T	1946902	3	4	46	1	0	0	0	0	1	0	0	0	10107	214	8	4	3265	4	MYT1L	2	1946902	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10		1946902	241252471	21	6626											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228862	21228862	+	Silent	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	APOB	NM_000384	exon26	c.T10878G	p.T3626T	GTTCTTAGTGTTA	.	350	115	273	0	.	175	C	21228862	A	C	21228862	2	2	46	1	0	0	0	0	0	0	0	1	785	407	15	5		5	APOB	2	21228862	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	19281960	21228862	221970511	22	6627											
LHCGR	3973	broad.mit.edu;bcgsc.ca	37	2	48914906	48914906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LHCGR	NM_000233	exon11	c.C2030G	p.T677S	TTCAAGGTGGATT	.	227	11	215	0	.	589	C	48914906	G	C	48914906	3	2	46	1	0	0	0	0	1	0	0	0	8762	1261	44	4	73	4	LHCGR	2	48914906	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	27686044	48914906	194284467	23	6628											
MERTK	10461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112786337	112786337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MERTK	NM_006343	exon19	c.G2896C	p.G966R	AGGAATGGGGTCT	.	80	28	68	0	.	1463	C	112786337	G	C	112786337	3	2	46	1	0	0	0	0	1	0	0	0	9479	1348	47	4	2970	4	MERTK	2	112786337	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	63871431	112786337	130413036	24	6629											
ZEB2	9839	broad.mit.edu;bcgsc.ca	37	2	145147427	145147427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZEB2	NM_014795	exon10	c.C3236A	p.S1079Y	CAGTAGGAATACC	.	67	6	50	0	.	297	T	145147427	G	T	145147427	3	4	46	1	0	0	0	0	1	0	0	0	17621	1174	41	3	412	3	ZEB2	2	145147427	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	32361090	145147427	98051946	25	6630											
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153496548	153496548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FMNL2	NM_052905	exon24	c.T3023A	p.L1008Q	AAGCTCTGATGGA	.	491	246	342	0	.	516	A	153496548	T	A	153496548	3	1	46	1	0	0	0	0	1	0	0	0	5952	1580	55	4	3117	4	FMNL2	2	153496548	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	8349121	153496548	89702825	26	6631											
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165948928	165948928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SCN3A	NM_006922	exon27	c.A4643G	p.D1548G	TGGTCATCCGTTT	.	413	204	368	0	.	141	C	165948928	T	C	165948928	3	2	46	1	0	0	0	0	1	0	0	0	13918	1435	50	2	1367	2	SCN3A	2	165948928	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	12452380	165948928	77250445	27	6632											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179510675	179510675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTN	NM_001267550	exon217	c.T40380A	p.D13460E	CTTCACATCTTCC	.	604	30	437	0	.	636	T	179510675	A	T	179510675	3	4	46	1	0	0	0	0	1	0	0	0	16732	214	8	4	67897	4	TTN	2	179510675	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	13561747	179510675	63688698	28	6633											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196674472	196674472	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH7	NM_018897	exon52	c.G9885A	p.R3295R	GACCGCCCGCTCA	.	515	160	283	0	.	102	T	196674472	C	T	196674472	2	4	46	1	0	0	0	0	0	0	0	1	4606	610	22	3		3	DNAH7	2	196674472	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	17163797	196674472	46524901	29	6634											
BZW1	9689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201677965	201677965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BZW1	NM_001207068	exon2	c.C121T	p.P41S	CAAAAGCCAACGC	.	117	62	98	0	.	90	T	201677965	C	T	201677965	3	4	46	1	0	0	0	0	1	0	0	0	1578	739	26	3	27	3	BZW1	2	201677965	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	5003493	201677965	41521408	30	6635											
CHPF	79586	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220404778	220404778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHPF	NM_024536	exon4	c.G1655A	p.R552H	GCCTGGCGCGGCT	.	33	13	55	1	.	90	T	220404778	C	T	220404778	3	4	46	1	0	0	0	0	1	0	0	0	3368	768	27	1	676	1	CHPF	2	220404778	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	18726813	220404778	22794595	31	6636											
COPS8	10920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237998516	237998516	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COPS8	NM_006710	exon4	c.A210G	p.E70E	TTCTGAACTTGGG	.	79	42	157	0	.	228	G	237998516	A	G	237998516	2	3	46	1	0	0	0	0	0	0	0	1	3740	40	2	2		2	COPS8	2	237998516	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	17593738	237998516	5200857	32	6637											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4726834	4726834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITPR1	NM_001099952	exon30	c.C3619T	p.R1207W	CTGCTCCGGAACA	.	70	30	90	0	.	710	T	4726834	C	T	4726834	3	4	46	1	0	0	0	0	1	0	0	0	7920	643	23	1	3756	1	ITPR1	3	4726834	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		4726834	193295596	33	6638											
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9703950	9703950	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MTMR14	NM_001077525	exon3	c.309-1G>A	.	GTGTTAGGTTTGA	.	188	39	204	0	.	91	A	9703950	G	A	9703950	5	1	46	1	0	0	0	0	0	0	1	0	9942	1014	35	3	318	3	MTMR14	3	9703950	Splice_Site	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	4977116	9703950	188318480	34	6639											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49145886	49145886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	USP19	NM_001199161	exon27	c.C4114T	p.R1372W	CTGGCCGATCCAC	.	49	14	56	0	.	663	A	49145886	G	A	49145886	3	1	46	1	0	0	0	0	1	0	0	0	17047	1073	37	1		1	USP19	3	49145886	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	39441936	49145886	148876544	35	6640											
ADCY5	111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	123166600	123166600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY5	NM_183357	exon1	c.C793A	p.P265T	GGAGCGGGGGCCG	.	67	17	50	0	.	94	T	123166600	G	T	123166600	3	4	46	1	0	0	0	0	1	0	0	0	297	1232	43	3	3076	3	ADCY5	3	123166600	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	74020714	123166600	74855830	36	6641											
RNF13	11342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	149589886	149589886	+	Missense_Mutation	SNP	C	C	T	rs138683130		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF13	NM_007282	exon5	c.C266T	p.S89L	ACAATTCATCTGG	.	221	36	263	0	C|1.000;T|0.000	227	T	149589886	C	T	149589886	3	4	46	1	0	0	0	0	1	0	0	0	13437	838	29	3	276	3	RNF13	3	149589886	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	26423286	149589886	48432544	37	6642											
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183056602	183056602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MCF2L2	NM_015078	exon5	c.A472C	p.K158Q	TCGTTTTAAACTC	.	147	51	151	0	.	293	G	183056602	T	G	183056602	3	3	46	1	0	0	0	0	1	0	0	0	9380	1763	61	5	2976	5	MCF2L2	3	183056602	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	33466716	183056602	14965828	38	6643											
HTR3D	200909	broad.mit.edu;bcgsc.ca	37	3	183753882	183753882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTR3D	NM_001163646	exon3	c.A374G	p.E125G	TCATCGAGGAGTC	.	140	9	127	0	.	90	G	183753882	A	G	183753882	3	3	46	1	0	0	0	0	1	0	0	0	7447	304	11	2	481	2	HTR3D	3	183753882	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	697280	183753882	14268548	39	6644											
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	189700835	189700835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LEPREL1	NM_018192	exon8	c.G1324A	p.G442S	ACTTACCTTCTCT	.	365	21	396	0	.	155	T	189700835	C	T	189700835	3	4	46	1	0	0	0	0	1	0	0	0	8730	695	24	3	834	3	LEPREL1	3	189700835	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	5946953	189700835	8321595	40	6645											
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	193028474	193028474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP13A5	NM_198505	exon21	c.G2478T	p.M826I	AGGAGACATTCTT	.	167	10	154	0	.	144	A	193028474	C	A	193028474	3	1	46	1	0	0	0	0	1	0	0	0	1127	478	17	3	1216	3	ATP13A5	3	193028474	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	3327639	193028474	4993956	41	6646											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3230361	3230361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTT	NM_002111	exon58	c.G7868T	p.W2623L	CCGTGTGGCTGGG	.	80	38	57	0	.	281	T	3230361	G	T	3230361	3	4	46	1	0	0	0	0	1	0	0	0	7457	1357	47	3	8098	3	HTT	4	3230361	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		3230361	187923915	42	6647											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	39878616	39878616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001100399	exon19	c.G2150A	p.R717Q	CACGATCGTATCT	.	437	30	302	0	.	.	T	39878616	C	T	39878616	3	4	46	1	0	0	0	0	1	0	0	0	11691	884	31	1	1923	1	PDS5A	4	39878616	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	36648255	39878616	151275660	43	6648											
RBM47	54502	broad.mit.edu;bcgsc.ca	37	4	40440062	40440062	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RBM47	NM_001098634	exon4	c.C849T	p.Y283Y	GAAGGCGTAGTCG	.	156	9	124	0	.	25	A	40440062	G	A	40440062	2	1	46	1	0	0	0	0	0	0	0	1	13141	1140	40	1		1	RBM47	4	40440062	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	561446	40440062	150714214	44	6649											
MUC7	4589	hgsc.bcm.edu;broad.mit.edu	37	4	71346650	71346650	+	Nonsense_Mutation	SNP	T	T	A	rs147746777	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC7	NM_001145007	exon4	c.T189A	p.Y63X	GTCCTATAAATGT	.	273	12	214	0	T|1.000;C|0.000	93	A	71346650	T	A	71346650	4	1	46	1	0	0	0	0	0	1	0	0	9981	1413	49	4	195	4	MUC7	4	71346650	Nonsense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	30906588	71346650	119807626	45	6650											
G3BP2	9908	broad.mit.edu;bcgsc.ca	37	4	76572314	76572314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	G3BP2	NM_012297	exon10	c.C956T	p.S319F	TTGTCAGAGTCAT	.	269	11	172	1	.	153	A	76572314	G	A	76572314	3	1	46	1	0	0	0	0	1	0	0	0	6142	942	33	3	504	3	G3BP2	4	76572314	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	5225664	76572314	114581962	46	6651											
EMCN	51705	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	101401081	101401081	+	Silent	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EMCN	NM_001159694	exon2	c.T180A	p.T60T	TTTAGGAGTTGTT	.	723	49	902	0	.	90	T	101401081	A	T	101401081	2	4	46	1	0	0	0	0	0	0	0	1	5086	291	11	4		4	EMCN	4	101401081	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	24828767	101401081	89753195	47	6652											
TNIP3	79931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122078361	122078361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TNIP3	NM_001244764	exon7	c.G482T	p.R161I	AGGAATCTTTCCG	.	364	131	335	1	.	91	A	122078361	C	A	122078361	3	1	46	1	0	0	0	0	1	0	0	0	16313	913	32	3	758	3	TNIP3	4	122078361	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	20677280	122078361	69075915	48	6653											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7773143	7773143	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY2	NM_020546	exon18	c.G2313A	p.V771V	CTTGGTGGGCTAC	.	412	186	382	0	.	97	A	7773143	G	A	7773143	2	1	46	1	0	0	0	0	0	0	0	1	294	1335	47	3		3	ADCY2	5	7773143	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		7773143	173142117	49	6654											
CDH6	1004	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31297484	31297484	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDH6	NM_004932	exon4	c.A612G	p.G204G	ACAGGGACAGCCC	.	294	124	220	1	.	159	G	31297484	A	G	31297484	2	3	46	1	0	0	0	0	0	0	0	1	3114	262	10	2		2	CDH6	5	31297484	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	23524341	31297484	149617776	50	6655											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	38406944	38406944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EGFLAM	NM_001205301	exon8	c.T843A	p.P281P	ACTTCCTGCTACC	.	338	21	319	0	.	187	A	38406944	T	A	38406944	2	1	46	1	0	0	0	0	0	0	0	1	4966	1567	55	4		4	EGFLAM	5	38406944	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	7109460	38406944	142508316	51	6656											
C5orf28	64417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	43446540	43446540	+	Silent	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C5orf28	NM_022483	exon3	c.T432G	p.L144L	CCAGGGAAGAAAG	.	214	13	195	0	.	90	C	43446540	A	C	43446540	2	2	46	1	0	0	0	0	0	0	0	1	2289	233	9	5		5	C5orf28	5	43446540	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	5039596	43446540	137468720	52	6657											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80021280	80021280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MSH3	NM_002439	exon9	c.A1349G	p.D450G	TGCAGGATGACAG	.	388	16	317	0	.	661	G	80021280	A	G	80021280	3	3	46	1	0	0	0	0	1	0	0	0	9871	333	12	2	1383	2	MSH3	5	80021280	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	36574740	80021280	100893980	53	6658											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	89933635	89933635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GPR98	NM_032119	exon11	c.C2110A	p.P704T	GTGACCCCGGATG	.	144	12	106	0	.	103	A	89933635	C	A	89933635	3	1	46	1	0	0	0	0	1	0	0	0	6721	623	22	3	2152	3	GPR98	5	89933635	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	9912355	89933635	90981625	54	6659											
IL9	3578	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	135231424	135231424	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IL9	NM_000590	exon1	c.C82T	p.L28L	TGTCCAGGATCCC	.	250	22	216	1	.	90	A	135231424	G	A	135231424	2	1	46	1	0	0	0	0	0	0	0	1	7707	991	35	3		3	IL9	5	135231424	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	45297789	135231424	45683836	55	6660											
FAM53C	51307	ucsc.edu;bcgsc.ca	37	5	137681160	137681160	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM53C	NM_001135647	exon4	c.A783G	p.R261R	CTGGCGACCTCGA	.	46	4	40	0	.	91	G	137681160	A	G	137681160	2	3	46	1	0	0	0	0	0	0	0	1	5581	262	10	2		2	FAM53C	5	137681160	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	2449736	137681160	43234100	56	6661											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139915024	139915024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANKHD1	NM_017747	exon30	c.G6928A	p.G2310R	ATACCAGGAACAA	.	288	115	252	0	.	185	A	139915024	G	A	139915024	3	1	46	1	0	0	0	0	1	0	0	0	628	1001	35	3	7152	3	ANKHD1	5	139915024	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2233864	139915024	41000236	57	6662											
HIST1H2BB	3018	broad.mit.edu;bcgsc.ca	37	6	26043596	26043596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HIST1H2BB	NM_021062	exon1	c.C290T	p.T97M	ACAGCCGTCTGAA	.	175	12	160	1	.	90	A	26043596	G	A	26043596	3	1	46	1	0	0	0	0	1	0	0	0	7141	1145	40	1	94	1	HIST1H2BB	6	26043596	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		26043596	145071471	58	6663											
TRIM31	11074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30071337	30071337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRIM31	NM_007028	exon9	c.G1254T	p.W418C	ACAAAACCAAGCC	.	65	34	71	1	.	658	A	30071337	C	A	30071337	3	1	46	1	0	0	0	0	1	0	0	0	16502	508	18	3	27	3	TRIM31	6	30071337	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	4027741	30071337	141043730	59	6664											
TNXB	7148	hgsc.bcm.edu;bcgsc.ca	37	6	32010105	32010105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TNXB	NM_019105	exon41	c.T12239G	p.F4080C	CTCCAGAAGTCTG	.	1240	314	1140	2	.	90	C	32010105	A	C	32010105	3	2	46	1	0	0	0	0	1	0	0	0	16343	246	9	5	2490	5	TNXB	6	32010105	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	1938768	32010105	139104962	60	6665											
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	41738507	41738507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FRS3	NM_006653	exon7	c.G1329T	p.M443I	GGTGGGCATGGGG	.	59	22	72	0	.	92	A	41738507	C	A	41738507	3	1	46	1	0	0	0	0	1	0	0	0	6062	710	25	3	153	3	FRS3	6	41738507	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	9728402	41738507	129376560	61	6666											
PGK2	5232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49754008	49754008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PGK2	NM_138733	exon1	c.T893A	p.V298D	TTTCCAACCTGAG	.	149	70	162	1	.	91	T	49754008	A	T	49754008	3	4	46	1	0	0	0	0	1	0	0	0	11791	43	2	4	364	4	PGK2	6	49754008	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	8015501	49754008	121361059	62	6667											
C6orf57	135154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71298368	71298368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C6orf57	NM_145267	exon3	c.G268C	p.G90R	CCCAGGGGCCCAG	.	281	120	262	0	.	90	C	71298368	G	C	71298368	3	2	46	1	0	0	0	0	1	0	0	0	2366	1232	43	4	278	4	C6orf57	6	71298368	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	21544360	71298368	99816699	63	6668											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76599823	76599823	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYO6	NM_004999	exon26	c.T2708G	p.V903G	CACTGGTTAAAAG	.	325	123	273	0	.	92	G	76599823	T	G	76599823	3	3	46	1	0	0	0	0	1	0	0	0	10081	1725	60	5	2806	5	MYO6	6	76599823	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	5301455	76599823	94515244	64	6669											
UBE2J1	51465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90053437	90053437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UBE2J1	NM_016021	exon2	c.G70T	p.D24Y	TTGGATCTTTCAA	.	82	64	96	0	.	226	A	90053437	C	A	90053437	3	1	46	1	0	0	0	0	1	0	0	0	16857	913	32	3	914	3	UBE2J1	6	90053437	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	13453614	90053437	81061630	65	6670											
RNF217	154214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	125402633	125402633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF217	NM_152553	exon7	c.G659T	p.G220V	CACTAGGGGCCAT	.	325	30	303	0	.	68	T	125402633	G	T	125402633	3	4	46	1	0	0	0	0	1	0	0	0	13481	1232	43	3	677	3	RNF217	6	125402633	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	35349196	125402633	45712434	66	6671											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	144765510	144765510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UTRN	NM_007124	exon13	c.G1606T	p.E536X	TTATTGGAAGAAC	.	42	29	51	0	.	95	T	144765510	G	T	144765510	4	4	46	1	0	0	0	0	0	1	0	0	17100	1175	41	3	1656	3	UTRN	6	144765510	Nonsense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	19362877	144765510	26349557	67	6672											
RAB32	10981	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	146865246	146865246	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAB32	NM_006834	exon1	c.G239A	p.W80X	AGCTGTGGGACAT	.	133	17	136	0	.	651	A	146865246	G	A	146865246	4	1	46	1	0	0	0	0	0	1	0	0	12921	1357	47	3	241	3	RAB32	6	146865246	Nonsense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2099736	146865246	24249821	68	6673											
SYNE1	23345	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152631939	152631939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNE1	NM_182961	exon88	c.A16780C	p.T5594P	CGCTAGTGAGGTA	.	342	33	363	2	.	607	G	152631939	T	G	152631939	3	3	46	1	0	0	0	0	1	0	0	0	15442	1696	59	5	9922	5	SYNE1	6	152631939	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	5766693	152631939	18483128	69	6674											
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6189266	6189266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	USP42,NS,malignant_melanoma,-1	USP42	NM_032172	exon13	c.1439delC	p.S480fs	GCAGTTCCATGTC	.	280	57	207	0	.	659	-	6189266	C	-	6189266	7	5	46	1	0	1	0	1	0	0	0	0	17070	855	30	0	1485	0	USP42	7	6189266	Frame_Shift_Del	DEL	C	TCGA-DD-A113-01A-11D-A12Z-10		6189266	152949397	70	6675											
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7571014	7571014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL28A1	NM_001037763	exon3	c.G646A	p.D216N	TTGGATCACTCAA	.	148	50	124	0	.	93	T	7571014	C	T	7571014	3	4	46	1	0	0	0	0	1	0	0	0	3686	826	29	3	2863	3	COL28A1	7	7571014	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	1381748	7571014	151567649	71	6676											
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	17833732	17833732	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SNX13	NM_015132	exon26	c.G2811A	p.K937K	CATCTGCTTTGAC	.	707	37	463	0	.	650	T	17833732	C	T	17833732	2	4	46	1	0	0	0	0	0	0	0	1	14884	796	28	3		3	SNX13	7	17833732	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	10262718	17833732	141304931	72	6677											
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	53104219	53104219	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_182595	exon1	c.C855T	p.L285L	CGCCCTCGAGGTC	.	142	80	80	0	.	.	T	53104219	C	T	53104219	2	4	46	1	0	0	0	0	0	0	0	1	12241	871	31	1		1	POM121L12	7	53104219	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	35270487	53104219	106034444	73	6678											
CDK14	5218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	90355912	90355912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDK14	NM_012395	exon2	c.G101T	p.C34F	GGAACTGCCAGGG	.	194	11	180	0	.	970	T	90355912	G	T	90355912	3	4	46	1	0	0	0	0	1	0	0	0	3130	1319	46	3	107	3	CDK14	7	90355912	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	37251693	90355912	68782751	74	6679											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113518905	113518905	+	Missense_Mutation	SNP	C	C	G	rs4304271	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PPP1R3A	NM_002711	exon4	c.G2242C	p.E748Q	CTTTTTCTCTAGC	.	143	48	121	0	C|1.000;|0.000	832	G	113518905	C	G	113518905	3	3	46	1	0	0	0	0	1	0	0	0	12371	922	32	4	1130	4	PPP1R3A	7	113518905	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	23162993	113518905	45619758	75	6680											
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114655974	114655974	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MDFIC	NM_199072	exon5	c.T1053C	p.I351I	TGGAATTTGTTTT	.	267	106	225	0	.	91	C	114655974	T	C	114655974	2	2	46	1	0	0	0	0	0	0	0	1	9405	1829	64	2		2	MDFIC	7	114655974	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	1137069	114655974	44482689	76	6681											
MKRN1	23608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140156621	140156621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MKRN1	NM_013446	exon5	c.G817T	p.V273L	GCTGCACGGCAAA	.	129	44	103	0	.	91	A	140156621	C	A	140156621	3	1	46	1	0	0	0	0	1	0	0	0	9606	536	19	1	651	1	MKRN1	7	140156621	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	25500647	140156621	18982042	77	6682											
KEL	3792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142639989	142639989	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KEL	NM_000420	exon17	c.C1914T	p.D638D	CCCAACGTCTGCA	.	147	8	121	0	.	93	A	142639989	G	A	142639989	2	1	46	1	0	0	0	0	0	0	0	1	8142	1136	40	1		1	KEL	7	142639989	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2483368	142639989	16498674	78	6683											
MYOM2	9172	ucsc.edu;bcgsc.ca	37	8	2033424	2033424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYOM2	NM_003970	exon14	c.G1546A	p.G516S	CCCACCGGTGTGC	.	36	4	60	0	.	95	A	2033424	G	A	2033424	3	1	46	1	0	0	0	0	1	0	0	0	10092	1116	39	1	1596	1	MYOM2	8	2033424	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		2033424	144330598	79	6684											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53569525	53569525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RB1CC1	NM_001083617	exon15	c.G2864A	p.R955Q	ATTTCTCGTGACT	.	356	16	359	0	.	170	T	53569525	C	T	53569525	3	4	46	1	0	0	0	0	1	0	0	0	13099	884	31	1	1960	1	RB1CC1	8	53569525	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	51536101	53569525	92794497	80	6685											
XKR9	389668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	71646369	71646369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	XKR9	NM_001011720	exon5	c.A832G	p.I278V	TTTAATATTAAGG	.	895	44	544	0	.	92	G	71646369	A	G	71646369	3	3	46	1	0	0	0	0	1	0	0	0	17435	449	16	2	842	2	XKR9	8	71646369	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	18076844	71646369	74717653	81	6686											
RDH10	157506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	74209535	74209535	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RDH10	NM_172037	exon2	c.C396T	p.V132V	AAGAGTCCGCAAG	.	445	19	252	0	.	514	T	74209535	C	T	74209535	2	4	46	1	0	0	0	0	0	0	0	1	13189	842	30	3		3	RDH10	8	74209535	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	2563166	74209535	72154487	82	6687											
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95839952	95839952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INTS8	NM_017864	exon4	c.C449A	p.A150E	TCAGGGCAATTAG	.	271	11	173	0	.	90	A	95839952	C	A	95839952	3	1	46	1	0	0	0	0	1	0	0	0	7784	710	25	3	463	3	INTS8	8	95839952	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	21630417	95839952	50524070	83	6688											
TSPYL5	85453	broad.mit.edu;bcgsc.ca	37	8	98289467	98289467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TSPYL5	NM_033512	exon1	c.G606A	p.M202I	CGTATCCATGCTG	.	97	7	59	0	.	136	T	98289467	C	T	98289467	3	4	46	1	0	0	0	0	1	0	0	0	16659	594	21	3	651	3	TSPYL5	8	98289467	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	2449515	98289467	48074555	84	6689											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	131793001	131793001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY8	NM_001115	exon18	c.C3391T	p.Q1131X	GGACTTGGATCCG	.	127	35	93	0	.	157	A	131793001	G	A	131793001	4	1	46	1	0	0	0	0	0	1	0	0	300	1357	47	3	368	3	ADCY8	8	131793001	Nonsense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	33503534	131793001	14571021	85	6690											
DGAT1	8694	broad.mit.edu;mdanderson.org	37	8	145540247	145540247	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_012079	exon17	c.C1437T	p.L479L	ATAGTTGAGCACG	.	65	30	54	1	.	.	A	145540247	G	A	145540247	2	1	46	1	0	0	0	0	0	0	0	1	4457	1277	45	3		3	DGAT1	8	145540247	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	13747246	145540247	823775	86	6691											
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2718691	2718691	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KCNV2	NM_133497	exon1	c.C952T	p.L318L	GAGTACCTGCTGC	.	97	9	113	0	.	515	T	2718691	C	T	2718691	2	4	46	1	0	0	0	0	0	0	0	1	8095	680	24	3		3	KCNV2	9	2718691	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		2718691	138494740	87	6692											
NFIB	4781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14307000	14307000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFIB	NM_001190738	exon2	c.G628A	p.V210M	CCTGCACGTAGTA	.	157	83	160	0	.	226	T	14307000	C	T	14307000	3	4	46	1	0	0	0	0	1	0	0	0	10371	536	19	1	744	1	NFIB	9	14307000	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	11588309	14307000	126906431	88	6693											
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17787406	17787406	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3GL2	NM_003026	exon5	c.C360A	p.A120A	GGAGGCCATGCGG	.	49	9	95	0	.	91	A	17787406	C	A	17787406	2	1	46	1	0	0	0	0	0	0	0	1	14251	581	21	3		3	SH3GL2	9	17787406	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	3480406	17787406	123426025	89	6694											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27228230	27228230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TEK	NM_000459	exon22	c.G3227T	p.R1076L	GCTGGCGGGAGAA	.	99	27	105	0	.	1584	T	27228230	G	T	27228230	3	4	46	1	0	0	0	0	1	0	0	0	15748	1116	39	1	3313	1	TEK	9	27228230	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	9440824	27228230	113985201	90	6695											
NFX1	4799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33351695	33351695	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFX1	NM_147133	exon16	c.G2562A	p.Q854Q	CAAGCAGCCCTGC	.	91	16	90	0	.	91	A	33351695	G	A	33351695	2	1	46	1	0	0	0	0	0	0	0	1	10387	962	34	3		3	NFX1	9	33351695	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	6123465	33351695	107861736	91	6696											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88934568	88934568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZCCHC6	NM_024617	exon15	c.A3046T	p.I1016F	CTATAATTGTTGG	.	90	19	87	0	.	92	A	88934568	T	A	88934568	3	1	46	1	0	0	0	0	1	0	0	0	17589	1493	52	4	1493	4	ZCCHC6	9	88934568	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	55582873	88934568	52278863	92	6697											
SEMA4D	10507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91991876	91991876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SEMA4D	NM_001142287	exon18	c.C1754A	p.T585N	CAGGGGGTCCAGG	.	68	20	85	2	.	92	T	91991876	G	T	91991876	3	4	46	1	0	0	0	0	1	0	0	0	14034	1261	44	3	478	3	SEMA4D	9	91991876	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	3057308	91991876	49221555	93	6698											
WDR31	114987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116082738	116082738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	WDR31	NM_001012361	exon9	c.C679G	p.P227A	TTGCAGGAAACAT	.	121	61	142	0	.	90	C	116082738	G	C	116082738	3	2	46	1	0	0	0	0	1	0	0	0	17283	1174	41	4	436	4	WDR31	9	116082738	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	24090862	116082738	25130693	94	6699											
URM1	81605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131140322	131140322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	URM1	NM_001265582	exon2	c.G43A	p.A15T	GGTGGTGCGGAGC	.	373	39	452	1	.	90	A	131140322	G	A	131140322	3	1	46	1	0	0	0	0	1	0	0	0	17024	1319	46	3	49	3	URM1	9	131140322	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	15057584	131140322	10073109	95	6700											
ASB6	140459	ucsc.edu;bcgsc.ca	37	9	132400355	132400355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ASB6	NM_017873	exon6	c.A980G	p.E327G	ACAGTCTCAGCTT	.	43	4	52	0	.	226	C	132400355	T	C	132400355	3	2	46	1	0	0	0	0	1	0	0	0	1027	1551	54	2	289	2	ASB6	9	132400355	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	1260033	132400355	8813076	96	6701											
TMEM8C	389827	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136379801	136379801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM8C	NM_001080483	exon5	c.C623A	p.P208Q	TTGGCCGGGGTCC	.	89	39	116	1	.	68	T	136379801	G	T	136379801	3	4	46	1	0	0	0	0	1	0	0	0	16213	1116	39	1	46	1	TMEM8C	9	136379801	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	3979446	136379801	4833630	97	6702											
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	29599920	29599920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LYZL1	NM_032517	exon5	c.C517A	p.Q173K	CTCAGGCAAGGCT	.	195	104	159	0	.	90	A	29599920	C	A	29599920	3	1	46	1	0	0	0	0	1	0	0	0	9131	724	25	3	535	3	LYZL1	10	29599920	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		29599920	105934827	98	6703											
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	49661391	49661391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARHGAP22	NM_001256024	exon8	c.A992G	p.N331S	AGAATGTTAGGTC	.	282	17	244	0	.	228	C	49661391	T	C	49661391	3	2	46	1	0	0	0	0	1	0	0	0	872	1725	60	2	1164	2	ARHGAP22	10	49661391	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	20061471	49661391	85873356	99	6704											
CYP2C18	1562	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96493059	96493059	+	Silent	SNP	G	G	T	rs114879149	byfrequency;alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CYP2C18	NM_000772	exon8	c.G1155T	p.T385T	GGGCACGACCATA	.	291	42	266	1	G|0.996;A|0.004	95	T	96493059	G	T	96493059	2	4	46	1	0	0	0	0	0	0	0	1	4165	1045	37	1		1	CYP2C18	10	96493059	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	46831668	96493059	39041688	100	6705											
TCTN3	26123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97447351	97447351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TCTN3	NM_015631	exon4	c.A625T	p.R209W	TCACCCTGTAAAA	.	208	117	141	0	.	22	A	97447351	T	A	97447351	3	1	46	1	0	0	0	0	1	0	0	0	15721	1579	55	4	1242	4	TCTN3	10	97447351	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	954292	97447351	38087396	101	6706											
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117607492	117607492	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATRNL1	NM_207303	exon28	c.T4008A	p.P1336P	TCCCCCTGGGCAG	.	229	70	207	0	.	96	A	117607492	T	A	117607492	2	1	46	1	0	0	0	0	0	0	0	1	1207	1567	55	4		4	ATRNL1	10	117607492	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	20160141	117607492	17927255	102	6707											
DUSP8	1850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1586842	1586842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DUSP8	NM_004420	exon2	c.C215T	p.P72L	GCAGCCGGCTGGA	.	108	23	126	0	.	226	A	1586842	G	A	1586842	3	1	46	1	0	0	0	0	1	0	0	0	4831	1116	39	1	1686	1	DUSP8	11	1586842	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		1586842	133419674	103	6708											
TRIM6-TRIM34	445372	broad.mit.edu;bcgsc.ca	37	11	5663672	5663672	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRIM6-TRIM34	NM_001003819	exon12	c.T1872C	p.V624V	AATGGTTTCCAAG	.	83	4	113	0	.	45	C	5663672	T	C	5663672	2	2	46	1	0	0	0	0	0	0	0	1	16531	1828	64	2		2	TRIM6-TRIM34	11	5663672	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	4076830	5663672	129342844	104	6709											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6566486	6566486	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNHD1	NM_144666	exon21	c.T4317A	p.P1439P	CCTTCCTCTGCAT	.	53	12	77	0	.	24	A	6566486	T	A	6566486	2	1	46	1	0	0	0	0	0	0	0	1	4668	1538	54	4		4	DNHD1	11	6566486	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	902814	6566486	128440030	105	6710											
TPP1	1200	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6638385	6638385	+	Splice_Site	SNP	C	C	T	rs56144125	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TPP1	NM_000391	exon7	c.509-1G>A	.	CCCCCACTGTAGG	.	124	51	144	0	C|0.999;G|0.001;T|0.000	90	T	6638385	C	T	6638385	5	4	46	1	0	0	0	0	0	0	1	0	16408	579	20	3	1215	3	TPP1	11	6638385	Splice_Site	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	71899	6638385	128368131	106	6711											
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597714	36597714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAG1	NM_000448	exon2	c.G2860T	p.G954C	AGGGATGGCTCCA	.	114	45	117	0	.	230	T	36597714	G	T	36597714	3	4	46	1	0	0	0	0	1	0	0	0	13003	1348	47	3	2862	3	RAG1	11	36597714	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	29959329	36597714	98408802	107	6712											
OR5D18	219438	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55587248	55587248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR5D18	NM_001001952	exon1	c.T143C	p.V48A	TGATTGTGATCAT	.	475	30	467	1	.	71	C	55587248	T	C	55587248	3	2	46	1	0	0	0	0	1	0	0	0	11157	1696	59	2	145	2	OR5D18	11	55587248	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	18989534	55587248	79419268	108	6713											
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56113637	56113637	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR8K1	NM_001002907	exon1	c.T123C	p.Y41Y	CATATATCTGGTC	.	343	21	374	0	.	70	C	56113637	T	C	56113637	2	2	46	1	0	0	0	0	0	0	0	1	11243	1442	50	2		2	OR8K1	11	56113637	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	526389	56113637	78892879	109	6714											
SMTNL1	219537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57317551	57317551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SMTNL1	NM_001105565	exon7	c.T1451G	p.V484G	GCCTTGTGCAGAA	.	120	53	137	0	.	23	G	57317551	T	G	57317551	3	3	46	1	0	0	0	0	1	0	0	0	14815	1696	59	5	1535	5	SMTNL1	11	57317551	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	1203914	57317551	77688965	110	6715											
MS4A6A	64231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59947427	59947427	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MS4A6A	NM_001247999	exon4	c.C243A	p.I81I	ACACAAGATCTGG	.	163	86	158	0	.	90	T	59947427	G	T	59947427	2	4	46	1	0	0	0	0	0	0	0	1	9864	932	33	3		3	MS4A6A	11	59947427	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2629876	59947427	75059089	111	6716											
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70333710	70333710	+	Silent	SNP	C	C	T	rs141694314	by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SHANK2	NM_133266	exon10	c.G924A	p.P308P	TGGGGACGGGGGC	.	125	31	151	0	C|0.999;T|0.000	94	T	70333710	C	T	70333710	2	4	46	1	0	0	0	0	0	0	0	1	14265	523	19	1		1	SHANK2	11	70333710	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	10386283	70333710	64672806	112	6717											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92565042	92565042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAT3	NM_001008781	exon13	c.C9736T	p.P3246S	ACGGTGCCTGAGG	.	76	21	129	0	.	73	T	92565042	C	T	92565042	3	4	46	1	0	0	0	0	1	0	0	0	5691	739	26	3	9786	3	FAT3	11	92565042	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	22231332	92565042	42441474	113	6718											
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93911635	93911635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PANX1	NM_015368	exon3	c.T422C	p.F141S	TGAAGTTTATCAT	.	234	13	272	0	.	68	C	93911635	T	C	93911635	3	2	46	1	0	0	0	0	1	0	0	0	11420	1841	64	2	432	2	PANX1	11	93911635	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	1346593	93911635	41094881	114	6719											
A2ML1	144568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9020503	9020503	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	A2ML1	NM_144670	exon30	c.G3783A	p.E1261E	TGAGGAGATCAAC	.	244	89	216	2	.	93	A	9020503	G	A	9020503	2	1	46	1	0	0	0	0	0	0	0	1	5	933	33	3		3	A2ML1	12	9020503	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		9020503	124831392	115	6720											
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10150973	10150973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CLEC1B	NM_016509	exon2	c.C71A	p.S24Y	GATGCAGAGCCAA	.	244	11	238	0	.	90	T	10150973	G	T	10150973	3	4	46	1	0	0	0	0	1	0	0	0	3506	942	33	3	638	3	CLEC1B	12	10150973	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	1130470	10150973	123700922	116	6721											
ABCD2	225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39973407	39973407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCD2	NM_005164	exon8	c.A1807T	p.M603L	AGTCCATAACAGC	.	64	36	24	0	.	95	A	39973407	T	A	39973407	3	1	46	1	0	0	0	0	1	0	0	0	61	1406	49	4	427	4	ABCD2	12	39973407	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	29822434	39973407	93878488	117	6722											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40745384	40745384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LRRK2	NM_198578	exon44	c.G6425A	p.R2142K	TGACGAGACGCAT	.	179	10	195	0	.	533	A	40745384	G	A	40745384	3	1	46	1	0	0	0	0	1	0	0	0	9033	942	33	3	6599	3	LRRK2	12	40745384	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	771977	40745384	93106511	118	6723											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	43769288	43769288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADAMTS20	NM_025003	exon36	c.T5340A	p.F1780L	CCCATTAAAAGGA	.	314	16	269	0	.	795	T	43769288	A	T	43769288	3	4	46	1	0	0	0	0	1	0	0	0	266	359	13	4	407	4	ADAMTS20	12	43769288	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	3023904	43769288	90082607	119	6724											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57599015	57599015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LRP1	NM_002332	exon73	c.A11318G	p.E3773G	CTGACGAGGAGGA	.	75	19	69	0	.	596	G	57599015	A	G	57599015	3	3	46	1	0	0	0	0	1	0	0	0	8951	304	11	2	11608	2	LRP1	12	57599015	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	13829727	57599015	76252880	120	6725											
GALNT4	8693	broad.mit.edu;bcgsc.ca	37	12	89917584	89917584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_003774	exon1	c.A743G	p.E248G	GCTGTTTCATCTC	.	166	7	166	0	.	.	C	89917584	T	C	89917584	3	2	46	1	0	0	0	0	1	0	0	0	6215	1783	62	2	997	2	GALNT4	12	89917584	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	32318569	89917584	43934311	121	6726											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117696859	117696859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NOS1	NM_000620	exon15	c.G2444T	p.G815V	CCATTGCCAAAGG	.	161	39	140	0	.	154	A	117696859	C	A	117696859	3	1	46	1	0	0	0	0	1	0	0	0	10541	739	26	3	1920	3	NOS1	12	117696859	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	27779275	117696859	16155036	122	6727											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124399402	124399402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH10	NM_207437	exon61	c.G10224T	p.W3408C	CAGATGGGGATCC	.	130	21	95	0	.	95	T	124399402	G	T	124399402	3	4	46	1	0	0	0	0	1	0	0	0	4598	1241	43	3	10466	3	DNAH10	12	124399402	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	6702543	124399402	9452493	123	6728											
RNF6	6049	broad.mit.edu;bcgsc.ca	37	13	26788012	26788012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF6	NM_183043	exon5	c.T2007C	p.C669C	GATCGGACAAGTG	.	183	8	242	0	.	228	G	26788012	A	G	26788012	2	3	46	1	0	0	0	0	0	0	0	1	13498	273	10	2		2	RNF6	13	26788012	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10		26788012	88381866	124	6729											
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498525	28498525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDX1	NM_000209	exon2	c.C539T	p.A180V	AGCTGGCTGTCAT	.	82	66	104	0	.	514	T	28498525	C	T	28498525	3	4	46	1	0	0	0	0	1	0	0	0	11695	797	28	3	545	3	PDX1	13	28498525	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	1710513	28498525	86671353	125	6730											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	48881512	48881512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	RB1,NS,Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour,0	RB1	NM_000321	exon2	c.G234A	p.W78X	AACTTGGGAGAAA	.	235	173	247	0	.	3784	A	48881512	G	A	48881512	4	1	46	1	0	0	0	0	0	1	0	0	13098	1241	43	3	240	3	RB1	13	48881512	Nonsense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	20382987	48881512	66288366	126	6731											
DCT	1638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95131263	95131263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	DCT,mouth,carcinoma,+1	DCT	NM_001129889	exon1	c.C247T	p.R83C	GCTCACGGTCATC	.	101	48	99	0	.	94	A	95131263	G	A	95131263	3	1	46	1	0	0	0	0	1	0	0	0	4304	1116	39	1	1451	1	DCT	13	95131263	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	46249751	95131263	20038615	127	6732											
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	110804702	110804702	+	Missense_Mutation	SNP	A	A	G	rs201012509		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL4A1	NM_001845	exon51	c.T4907C	p.I1636T	CTCTCTATGGTGG	.	142	53	99	0	A|0.999;G|0.000	654	G	110804702	A	G	110804702	3	3	46	1	0	0	0	0	1	0	0	0	3689	449	16	2	110	2	COL4A1	13	110804702	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	15673439	110804702	4365176	128	6733											
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	29237217	29237217	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FOXG1	NM_005249	exon1	c.C732A	p.R244R	GCCGCGCCACTAC	.	91	23	126	0	.	660	A	29237217	C	A	29237217	2	1	46	1	0	0	0	0	0	0	0	1	6007	726	26	3		3	FOXG1	14	29237217	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		29237217	78112323	129	6734											
ATL1	51062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51087446	51087446	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATL1	NM_001127713	exon10	c.990+2T>A	.	TCAAGGTATCACT	.	94	45	120	1	.	93	A	51087446	T	A	51087446	5	1	46	1	0	0	0	0	0	0	1	0	1106	1652	57	4	1026	4	ATL1	14	51087446	Splice_Site	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	21850229	51087446	56262094	130	6735											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	75513372	75513372	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MLH3	NM_014381	exon2	c.2987delG	p.G996fs	AGACTTCCTATCT	.	269	62	340	0	.	228	-	75513372	C	-	75513372	7	5	46	1	0	1	0	1	0	0	0	0	9618	855	30	0	1422	0	MLH3	14	75513372	Frame_Shift_Del	DEL	C	TCGA-DD-A113-01A-11D-A12Z-10	24425926	75513372	31836168	131	6736											
TMED10	10972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75614379	75614379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMED10	NM_006827	exon3	c.A399C	p.K133N	GTAATTTTTCGCC	.	130	58	168	1	.	90	G	75614379	T	G	75614379	3	3	46	1	0	0	0	0	1	0	0	0	16000	1838	64	5	272	5	TMED10	14	75614379	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	101007	75614379	31735161	132	6737											
INF2	64423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105174811	105174811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INF2	NM_022489	exon9	c.G1774A	p.A592T	CCCGACGCCGAGG	.	85	15	84	0	.	492	A	105174811	G	A	105174811	3	1	46	1	0	0	0	0	1	0	0	0	7734	1087	38	1	1808	1	INF2	14	105174811	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	29560432	105174811	2174729	133	6738											
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105716439	105716439	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BTBD6	NM_033271	exon5	c.C888T	p.G296G	CAACGGCGCTGCC	.	41	25	48	0	.	90	T	105716439	C	T	105716439	2	4	46	1	0	0	0	0	0	0	0	1	1545	755	27	1		1	BTBD6	14	105716439	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	541628	105716439	1633101	134	6739											
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35212596	35212596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AQR	NM_014691	exon14	c.G1158T	p.L386F	TGGCAACAAGCAG	.	69	33	76	0	.	135	A	35212596	C	A	35212596	3	1	46	1	0	0	0	0	1	0	0	0	835	477	17	3	3387	3	AQR	15	35212596	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		35212596	67318796	135	6740											
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	39909936	39909936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FSIP1	NM_152597	exon11	c.G1699A	p.D567N	CCTCACCTGCTAT	.	101	54	126	0	.	517	T	39909936	C	T	39909936	3	4	46	1	0	0	0	0	1	0	0	0	6074	695	24	3	54	3	FSIP1	15	39909936	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	4697340	39909936	62621456	136	6741											
CHAC1	79094	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	41247963	41247963	+	Silent	SNP	G	G	A	rs147315683	bycluster;byfrequency;by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHAC1	NM_024111	exon3	c.G786A	p.A262A	TCTGGCGCTGGTG	.	30	9	18	0	G|0.999;A|0.001	90	A	41247963	G	A	41247963	2	1	46	1	0	0	0	0	0	0	0	1	3308	1074	38	1		1	CHAC1	15	41247963	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	1338027	41247963	61283429	137	6742											
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42115228	42115228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAPKBP1	NM_001128608	exon29	c.G3424A	p.A1142T	AATGGTGCCAATC	.	61	31	60	0	.	589	A	42115228	G	A	42115228	3	1	46	1	0	0	0	0	1	0	0	0	9292	1319	46	3	3534	3	MAPKBP1	15	42115228	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	867265	42115228	60416164	138	6743											
MYEF2	50804	broad.mit.edu;mdanderson.org	37	15	48470360	48470360	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYEF2	NM_016132	exon1	c.G75A	p.P25P	GCCCGGCGGCTCT	.	20	5	12	0	.	523	T	48470360	C	T	48470360	2	4	46	1	0	0	0	0	0	0	0	1	10024	755	27	1		1	MYEF2	15	48470360	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	6355132	48470360	54061032	139	6744											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86810275	86810275	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_152336	exon12	c.A1668G	p.S556S	TGAGTCAGGAAAT	.	260	144	290	0	.	.	G	86810275	A	G	86810275	2	3	46	1	0	0	0	0	0	0	0	1	375	175	7	2		2	AGBL1	15	86810275	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	38339915	86810275	15721117	140	6745											
FAM174B	400451	broad.mit.edu;bcgsc.ca	37	15	93198581	93198581	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM174B	NM_207446	exon1	c.C309A	p.T103T	GAGGAGGGTGGTA	.	92	8	100	0	.	90	T	93198581	G	T	93198581	2	4	46	1	0	0	0	0	0	0	0	1	5496	1219	43	3		3	FAM174B	15	93198581	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	6388306	93198581	9332811	141	6746											
RHBDL1	9028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	726998	726998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RHBDL1	NM_003961	exon3	c.C649T	p.R217C	GGGGCCCGCCTCA	.	71	12	73	0	.	90	T	726998	C	T	726998	3	4	46	1	0	0	0	0	1	0	0	0	13321	652	23	1	659	1	RHBDL1	16	726998	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		726998	89627755	142	6747											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15931795	15931795	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYH11	NM_001040114	exon2	c.G315A	p.L105L	CTCCCTCAGGTTG	.	224	102	192	0	.	666	T	15931795	C	T	15931795	2	4	46	1	0	0	0	0	0	0	0	1	10031	813	29	3		3	MYH11	16	15931795	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	15204797	15931795	74422958	143	6748											
DOC2A	8448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30018188	30018188	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOC2A	NM_003586	exon8	c.C796A	p.R266R	GTCCCCGGCGCCG	.	68	8	51	0	.	92	T	30018188	G	T	30018188	2	4	46	1	0	0	0	0	0	0	0	1	4683	1115	39	1		1	DOC2A	16	30018188	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	14086393	30018188	60336565	144	6749											
FBXL19	54620	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30958514	30958514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBXL19	NM_001099784	exon11	c.G2048A	p.R683H	CCTTCCGCTGCCC	.	24	9	14	0	.	661	A	30958514	G	A	30958514	3	1	46	1	0	0	0	0	1	0	0	0	5715	1087	38	1	2090	1	FBXL19	16	30958514	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	940326	30958514	59396239	145	6750											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31426269	31426269	+	Missense_Mutation	SNP	G	G	A	rs200483957		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITGAD	NM_005353	exon18	c.G2240A	p.R747H	ACCTGCGTCCTGT	.	110	50	92	0	.	226	A	31426269	G	A	31426269	3	1	46	1	0	0	0	0	1	0	0	0	7884	1145	40	1	2310	1	ITGAD	16	31426269	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	467755	31426269	58928484	146	6751											
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	28530206	28530206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC6A4	NM_001045	exon14	c.C1802T	p.P601L	GTCCCTGGAGTGA	.	196	13	135	0	.	94	A	28530206	G	A	28530206	3	1	46	1	0	0	0	0	1	0	0	0	14686	1348	47	3	98	3	SLC6A4	17	28530206	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		28530206	52665004	147	6752											
SLFN11	91607	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	33680372	33680372	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLFN11	NM_152270	exon4	c.T1905C	p.P635P	CCTCAGAGGCTGG	.	697	34	720	1	.	159	G	33680372	A	G	33680372	2	3	46	1	0	0	0	0	0	0	0	1	14733	291	11	2		2	SLFN11	17	33680372	Silent	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	5150166	33680372	47514838	148	6753											
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33925274	33925274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AP2B1	NM_001282	exon3	c.A63T	p.E21D	AGCTGAACTCAAC	.	180	77	138	0	.	91	T	33925274	A	T	33925274	3	4	46	1	0	0	0	0	1	0	0	0	741	40	2	4	69	4	AP2B1	17	33925274	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	244902	33925274	47269936	149	6754											
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40766524	40766524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TUBG1	NM_001070	exon10	c.G1007A	p.S336N	ACAAGAGCTTGCA	.	182	17	158	0	.	91	A	40766524	G	A	40766524	3	1	46	1	0	0	0	0	1	0	0	0	16761	971	34	3	1045	3	TUBG1	17	40766524	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	6841250	40766524	40428686	150	6755											
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47677798	47677798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPOP	NM_001007228	exon10	c.T1067A	p.L356Q	GAAGCCAGAGAGC	.	146	69	103	0	.	660	T	47677798	A	T	47677798	3	4	46	1	0	0	0	0	1	0	0	0	15083	188	7	4	61	4	SPOP	17	47677798	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	6911274	47677798	33517412	151	6756											
EPN3	55040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48617654	48617654	+	Missense_Mutation	SNP	C	C	T	rs142210765		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EPN3	NM_017957	exon6	c.C938T	p.P313L	TGGCCCCGCCCTC	.	67	7	58	0	C|1.000;T|0.000	91	T	48617654	C	T	48617654	3	4	46	1	0	0	0	0	1	0	0	0	5187	652	23	1	956	1	EPN3	17	48617654	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	939856	48617654	32577556	152	6757											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66270184	66270184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC16A6	NM_001174166	exon4	c.G260A	p.R87H	CCGAAACGATTGC	.	57	20	50	0	.	90	T	66270184	C	T	66270184	3	4	46	1	0	0	0	0	1	0	0	0	14412	536	19	1	1327	1	SLC16A6	17	66270184	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	17652530	66270184	14925026	153	6758											
FBF1	85302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73915917	73915917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBF1	NM_001080542	exon19	c.G1925T	p.R642L	TCCTCCCGTTGCT	.	137	51	110	0	.	205	A	73915917	C	A	73915917	3	1	46	1	0	0	0	0	1	0	0	0	5695	652	23	1	1520	1	FBF1	17	73915917	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	7645733	73915917	7279293	154	6759											
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76120679	76120679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMC6	NM_001127198	exon8	c.C817A	p.P273T	CCTGAGGGCCCAT	.	60	22	41	0	.	90	T	76120679	G	T	76120679	3	4	46	1	0	0	0	0	1	0	0	0	15986	1232	43	3	1652	3	TMC6	17	76120679	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2204762	76120679	5074531	155	6760											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	80047248	80047248	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FASN	NM_004104	exon13	c.G1978T	p.E660X	CGAACTCAAACAC	.	120	19	74	0	.	90	A	80047248	C	A	80047248	4	1	46	1	0	0	0	0	0	1	0	0	5683	835	29	3	5681	3	FASN	17	80047248	Nonsense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	3926569	80047248	1147962	156	6761											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47500944	47500944	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYO5B	NM_001080467	exon10	c.G1098A	p.G366G	CTCCACCCCTAGC	.	133	52	105	0	.	72	T	47500944	C	T	47500944	2	4	46	1	0	0	0	0	0	0	0	1	10079	610	22	3		3	MYO5B	18	47500944	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		47500944	30576304	157	6762											
SH3GL1	6455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4361758	4361758	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3GL1	NM_003025	exon10	c.G946C	p.D316H	CGAAGTCGTACAG	.	50	42	54	0	.	659	G	4361758	C	G	4361758	3	3	46	1	0	0	0	0	1	0	0	0	14250	884	31	4	164	4	SH3GL1	19	4361758	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10		4361758	54767225	158	6763											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	9074278	9074278	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon3	c.C13168T	p.Q4390X	CTGTTTGGGTGGT	.	395	36	529	0	.	566	A	9074278	G	A	9074278	4	1	46	1	0	0	0	0	0	1	0	0	9973	1357	47	3	30683	3	MUC16	19	9074278	Nonsense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	4712520	9074278	50054705	159	6764											
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9362317	9362317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR7E24	NM_001079935	exon1	c.T598C	p.S200P	GACCCTTCTCAAC	.	271	18	309	0	.	47	C	9362317	T	C	9362317	3	2	46	1	0	0	0	0	1	0	0	0	11221	1783	62	2	600	2	OR7E24	19	9362317	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	288039	9362317	49766666	160	6765											
ZNF69	7620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12014498	12014498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF69	NM_021915	exon2	c.G132C	p.R44S	TTTCAGGAACCTG	.	679	386	385	0	.	91	C	12014498	G	C	12014498	3	2	46	1	0	0	0	0	1	0	0	0	18092	1165	41	4	138	4	ZNF69	19	12014498	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	2652181	12014498	47114485	161	6766											
CRLF1	9244	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18709391	18709391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CRLF1	NM_004750	exon4	c.C548T	p.T183I	TCACATGTGTTGT	.	198	44	115	1	.	514	A	18709391	G	A	18709391	3	1	46	1	0	0	0	0	1	0	0	0	3886	1377	48	3	744	3	CRLF1	19	18709391	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	6694893	18709391	40419592	162	6767											
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20003387	20003387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF253	NM_021047	exon4	c.G1331A	p.R444K	ATAAGAGAATTCA	.	233	15	122	0	.	90	A	20003387	G	A	20003387	3	1	46	1	0	0	0	0	1	0	0	0	17794	942	33	3	1345	3	ZNF253	19	20003387	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	1293996	20003387	39125596	163	6768											
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20003414	20003414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF253	NM_021047	exon4	c.A1358G	p.K453R	CTTACAAATGTGA	.	316	28	150	0	.	90	G	20003414	A	G	20003414	3	3	46	1	0	0	0	0	1	0	0	0	17794	14	1	2	1372	2	ZNF253	19	20003414	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	27	20003414	39125569	164	6769											
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36047867	36047867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP4A	NM_000704	exon12	c.C1817T	p.P606L	GCCCGGGGTGGGT	.	126	10	84	0	.	91	A	36047867	G	A	36047867	3	1	46	1	0	0	0	0	1	0	0	0	1145	1232	43	3	1334	3	ATP4A	19	36047867	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	16044453	36047867	23081116	165	6770											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36278140	36278140	+	Silent	SNP	G	G	A	rs200811520		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARHGAP33	NM_001172630	exon20	c.G2265A	p.P755P	ACCCCCGCCCCCT	.	67	30	47	0	G|0.999;A|0.000	229	A	36278140	G	A	36278140	2	1	46	1	0	0	0	0	0	0	0	1	882	1074	38	1		1	ARHGAP33	19	36278140	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	230273	36278140	22850843	166	6771											
ZNF570	148268	broad.mit.edu;bcgsc.ca	37	19	37975151	37975151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF570	NM_144694	exon5	c.G627C	p.K209N	GCCCAAGAGTGTC	.	136	6	84	0	.	91	C	37975151	G	C	37975151	3	2	46	1	0	0	0	0	1	0	0	0	17999	933	33	4	641	4	ZNF570	19	37975151	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	1697011	37975151	21153832	167	6772											
NFKBIB	4793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39395721	39395721	+	Silent	SNP	C	C	A	rs142337920	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFKBIB	NM_002503	exon2	c.C246A	p.A82A	CTCGGCCGGCACT	.	326	130	214	0	C|1.000;T|0.000	658	A	39395721	C	A	39395721	2	1	46	1	0	0	0	0	0	0	0	1	10378	639	23	1		1	NFKBIB	19	39395721	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	1420570	39395721	19733262	168	6773											
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53008031	53008031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001099694	exon5	c.G187A	p.V63M	GAGGCTGTGGGTG	.	101	47	89	0	.	.	A	53008031	G	A	53008031	3	1	46	1	0	0	0	0	1	0	0	0	18007	1377	48	3	193	3	ZNF578	19	53008031	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	13612310	53008031	6120952	169	6774											
ZNF813	126017	broad.mit.edu;bcgsc.ca	37	19	53995075	53995075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF813	NM_001004301	exon4	c.A1589G	p.K530R	GTGGCAAGGTTTT	.	310	18	238	1	.	67	G	53995075	A	G	53995075	3	3	46	1	0	0	0	0	1	0	0	0	18172	72	3	2	1599	2	ZNF813	19	53995075	Missense_Mutation	SNP	A	TCGA-DD-A113-01A-11D-A12Z-10	987044	53995075	5133908	170	6775											
SIGLEC1	6614	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3673312	3673312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SIGLEC1	NM_023068	exon15	c.C3886T	p.H1296Y	CGTTGTGGTACCA	.	71	7	41	0	.	167	A	3673312	G	A	3673312	3	1	46	1	0	0	0	0	1	0	0	0	14305	1348	47	3	1271	3	SIGLEC1	20	3673312	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		3673312	59352208	171	6776											
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3673732	3673732	+	Silent	SNP	G	G	A	rs144602570	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SIGLEC1	NM_023068	exon14	c.C3555T	p.G1185G	CTGCCCGCCATGG	.	60	28	30	0	G|0.999;A|0.001	167	A	3673732	G	A	3673732	2	1	46	1	0	0	0	0	0	0	0	1	14305	1074	38	1		1	SIGLEC1	20	3673732	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	420	3673732	59351788	172	6777											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9525047	9525047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAK7	NM_177990	exon8	c.A1838T	p.E613V	ATCACCTCAGGGG	.	64	42	134	0	.	1434	A	9525047	T	A	9525047	3	1	46	1	0	0	0	0	1	0	0	0	11405	1551	54	4	333	4	PAK7	20	9525047	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	5851315	9525047	53500473	173	6778											
FOXS1	2307	broad.mit.edu;bcgsc.ca	37	20	30432421	30432421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FOXS1	NM_004118	exon1	c.G925A	p.G309S	CGGAGCCTCCCTG	.	235	12	138	1	.	69	T	30432421	C	T	30432421	3	4	46	1	0	0	0	0	1	0	0	0	6035	681	24	3	71	3	FOXS1	20	30432421	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	20907374	30432421	32593099	174	6779											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40049753	40049753	+	Missense_Mutation	SNP	T	T	A	rs140430642	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHD6	NM_032221	exon31	c.A5522T	p.D1841V	TGCTGATCTGATG	.	89	54	116	0	T|1.000;C|0.000	238	A	40049753	T	A	40049753	3	1	46	1	0	0	0	0	1	0	0	0	3329	1435	50	4	2653	4	CHD6	20	40049753	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	9617332	40049753	22975767	175	6780											
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	58467323	58467323	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYCP2	NM_014258	exon23	c.C2086T	p.Q696X	TTTGTTGCTGATT	.	687	327	502	1	.	525	A	58467323	G	A	58467323	4	1	46	1	0	0	0	0	0	1	0	0	15429	1328	46	3	2594	3	SYCP2	20	58467323	Nonsense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	18417570	58467323	4558197	176	6781											
UCKL1	54963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	62577849	62577849	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UCKL1	NM_017859	exon2	c.G261A	p.W87X	ATTGTACCAGGGC	.	128	20	91	0	.	115	T	62577849	C	T	62577849	4	4	46	1	0	0	0	0	0	1	0	0	16922	508	18	3	1441	3	UCKL1	20	62577849	Nonsense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	4110526	62577849	447671	177	6782											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	22664428	22664428	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NCAM2	NM_004540	exon5	c.G486A	p.R162R	AGATCGGTTCGCT	.	489	37	352	0	.	94	A	22664428	G	A	22664428	2	1	46	1	0	0	0	0	0	0	0	1	10203	1248	44	3		3	NCAM2	21	22664428	Silent	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10		22664428	25465467	178	6783											
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34067440	34067440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNJ1	NM_203446	exon5	c.G749A	p.R250Q	CCAGCTCGTTCAC	.	312	105	174	0	.	232	T	34067440	C	T	34067440	3	4	46	1	0	0	0	0	1	0	0	0	15449	884	31	1	4235	1	SYNJ1	21	34067440	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	11403012	34067440	14062455	179	6784											
SLC37A1	54020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43962522	43962522	+	Silent	SNP	C	C	T	rs141486944	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC37A1	NM_018964	exon8	c.C495T	p.N165N	CATCAACGGGCTG	.	168	34	80	0	C|0.996;T|0.004	90	T	43962522	C	T	43962522	2	4	46	1	0	0	0	0	0	0	0	1	14597	535	19	1		1	SLC37A1	21	43962522	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	9895082	43962522	4167373	180	6785											
SLC25A17	10478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41173261	41173261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC25A17	NM_006358	exon6	c.A568G	p.K190E	GCCGTTTTAAACC	.	195	73	262	0	.	90	C	41173261	T	C	41173261	3	2	46	1	0	0	0	0	1	0	0	0	14479	1850	64	2	371	2	SLC25A17	22	41173261	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10		41173261	10131305	181	6786											
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	44112732	44112732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EFCAB6	NM_022785	exon9	c.878delT	p.L293fs	ACTTGTAGACAAA	.	299	117	430	0	.	97	-	44112732	A	-	44112732	7	5	46	1	0	1	0	1	0	0	0	0	4939	420	15	0	3723	0	EFCAB6	22	44112732	Frame_Shift_Del	DEL	A	TCGA-DD-A113-01A-11D-A12Z-10	2939471	44112732	7191834	182	6787											
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21550127	21550127	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CNKSR2	NM_001168647	exon11	c.T1245C	p.Y415Y	TTGCTATGAATAT	.	346	66	354	0	.	625	C	21550127	T	C	21550127	2	2	46	1	0	0	0	0	0	0	0	1	3607	1471	51	2		2	CNKSR2	23	21550127	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10		21550127	133720433	183	6788											
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	34962850	34962850	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM47B	NM_152631	exon1	c.C1902T	p.Y634Y	CAAGTACAAAGAA	.	212	15	244	0	.	196	T	34962850	C	T	34962850	2	4	46	1	0	0	0	0	0	0	0	1	5570	489	17	3		3	FAM47B	23	34962850	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	13412723	34962850	120307710	184	6789											
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100105359	100105359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NOX1	NM_013955	exon9	c.C914T	p.S305F	ACTTTGGATGGGT	.	183	103	248	0	.	131	A	100105359	G	A	100105359	3	1	46	1	0	0	0	0	1	0	0	0	10556	1174	41	3	800	3	NOX1	23	100105359	Missense_Mutation	SNP	G	TCGA-DD-A113-01A-11D-A12Z-10	65142509	100105359	55165201	185	6790											
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107834827	107834827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL4A5	NM_000495	exon21	c.C1376T	p.P459L	GCCCCCCAGGATC	.	566	150	735	0	.	133	T	107834827	C	T	107834827	3	4	46	1	0	0	0	0	1	0	0	0	3694	594	21	3	1458	3	COL4A5	23	107834827	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	7729468	107834827	47435733	186	6791											
RGAG1	57529	broad.mit.edu;bcgsc.ca	37	X	109695251	109695251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RGAG1	NM_020769	exon3	c.T1406C	p.M469T	TAACAATGGCCAA	.	137	9	174	0	.	132	C	109695251	T	C	109695251	3	2	46	1	0	0	0	0	1	0	0	0	13274	1464	51	2	1408	2	RGAG1	23	109695251	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	1860424	109695251	45575309	187	6792											
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439120	110439120	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAK3	NM_001128168	exon13	c.T1269C	p.D423D	TAGAGATATAAAG	.	460	239	528	0	.	1043	C	110439120	T	C	110439120	2	2	46	1	0	0	0	0	0	0	0	1	11402	1403	49	2		2	PAK3	23	110439120	Silent	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	743869	110439120	44831440	188	6793											
HTR2C	3358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	113965762	113965762	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTR2C	NM_000868	exon4	c.C95G	p.A32G	TAGCAGCTATAGT	.	615	40	745	2	.	133	G	113965762	C	G	113965762	3	3	46	1	0	0	0	0	1	0	0	0	7443	797	28	4	101	4	HTR2C	23	113965762	Missense_Mutation	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	3526642	113965762	41304798	189	6794											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	117752664	117752664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOCK11	NM_144658	exon31	c.T3444G	p.H1148Q	AAAACATGCATTT	.	365	35	377	0	.	93	G	117752664	T	G	117752664	3	3	46	1	0	0	0	0	1	0	0	0	4686	1461	51	5	3566	5	DOCK11	23	117752664	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	3786902	117752664	37517896	190	6795											
TMEM185A	84548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148690383	148690383	+	Silent	SNP	C	C	T	rs150113040	bycluster;by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM185A	NM_032508	exon3	c.G354A	p.P118P	GAACAGCGGCATG	.	350	81	397	0	C|1.000;T|0.000	131	T	148690383	C	T	148690383	2	4	46	1	0	0	0	0	0	0	0	1	16104	755	27	1		1	TMEM185A	23	148690383	Silent	SNP	C	TCGA-DD-A113-01A-11D-A12Z-10	30937719	148690383	6580177	191	6796											
GABRA3	2556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151393310	151393310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GABRA3	NM_000808	exon6	c.A559G	p.I187V	CATGAATTGTTAA	.	702	199	854	0	.	131	C	151393310	T	C	151393310	3	2	46	1	0	0	0	0	1	0	0	0	6162	1493	52	2	939	2	GABRA3	23	151393310	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	2702927	151393310	3877250	192	6797											
ATP6AP1	537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153657461	153657461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP6AP1	NM_001183	exon2	c.T229A	p.Y77N	TCTACCTACTTAG	.	197	33	268	0	.	138	A	153657461	T	A	153657461	3	1	46	1	0	0	0	0	1	0	0	0	1165	1522	53	4	235	4	ATP6AP1	23	153657461	Missense_Mutation	SNP	T	TCGA-DD-A113-01A-11D-A12Z-10	2264151	153657461	1613099	193	6798											
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6520166	6520166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ESPN	NM_031475	exon13	c.G2525T	p.R842L	GGCAGCGACAGGT	.	203	38	164	0	.	514	T	6520166	G	T	6520166	3	4	47	1	0	0	0	0	1	0	0	0	5254	1058	37	1	2575	1	ESPN	1	6520166	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10		6520166	242730455	1	6799											
TRAPPC3	27095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36614938	36614938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRAPPC3	NM_001270894	exon1	c.G42A	p.M14I	AGTTACCATTTTC	.	172	24	117	1	.	90	T	36614938	C	T	36614938	3	4	47	1	0	0	0	0	1	0	0	0	16457	608	21	3	520	3	TRAPPC3	1	36614938	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	30094772	36614938	212635683	2	6800											
MUTYH	4595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45795060	45795060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MUTYH	NM_001128425	exon16	c.G1568T	p.R523L	CCCATGCGGGGCT	.	326	50	244	1	.	1083	A	45795060	C	A	45795060	3	1	47	1	0	0	0	0	1	0	0	0	9993	768	27	1	85	1	MUTYH	1	45795060	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	9180122	45795060	203455561	3	6801											
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46485312	46485312	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MAST2	NM_015112	exon11	c.G1233A	p.Q411Q	GATGCAGCTGGTG	.	157	26	188	0	.	581	A	46485312	G	A	46485312	2	1	47	1	0	0	0	0	0	0	0	1	9325	962	34	3		3	MAST2	1	46485312	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	690252	46485312	202765309	4	6802											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	75037157	75037157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C1orf173	NM_001002912	exon14	c.G4237T	p.E1413X	CTTCCTCCCCACT	.	299	41	358	0	.	94	A	75037157	C	A	75037157	4	1	47	1	0	0	0	0	0	1	0	0	2014	864	30	3	359	3	C1orf173	1	75037157	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	28551845	75037157	174213464	5	6803											
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78407772	78407772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NEXN	NM_144573	exon12	c.T1538A	p.M513K	TGAATATGAAAGC	.	299	43	339	0	.	92	A	78407772	T	A	78407772	3	1	47	1	0	0	0	0	1	0	0	0	10355	1464	51	4	1580	4	NEXN	1	78407772	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	3370615	78407772	170842849	6	6804											
S100A7A	338324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153390678	153390678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	S100A7A	NM_176823	exon2	c.C120A	p.F40L	GAACTTCCCCAAT	.	446	163	312	1	.	91	A	153390678	C	A	153390678	3	1	47	1	0	0	0	0	1	0	0	0	13784	854	30	3	122	3	S100A7A	1	153390678	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	74982906	153390678	95859943	7	6805											
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181688911	181688911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CACNA1E	NM_001205293	exon13	c.G1663A	p.V555M	TTTGAAGTGGTCT	.	445	44	360	1	.	95	A	181688911	G	A	181688911	3	1	47	1	0	0	0	0	1	0	0	0	2542	1029	36	3	1713	3	CACNA1E	1	181688911	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	28298233	181688911	67561710	8	6806											
IVNS1ABP	10625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185274712	185274712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	IVNS1ABP	NM_006469	exon8	c.G721T	p.A241S	CCTCAGCCTGTCC	.	297	106	259	0	.	94	A	185274712	C	A	185274712	3	1	47	1	0	0	0	0	1	0	0	0	7930	739	26	3	1239	3	IVNS1ABP	1	185274712	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	3585801	185274712	63975909	9	6807											
OR2T12	127064	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248458244	248458244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2T12	NM_001004692	exon1	c.C637A	p.L213M	AGGACAGGATGAG	.	1594	243	1449	2	.	71	T	248458244	G	T	248458244	3	4	47	1	0	0	0	0	1	0	0	0	11019	991	35	3	328	3	OR2T12	1	248458244	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	63183532	248458244	792377	10	6808											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	73677972	73677972	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon8	c.C4315T	p.Q1439X	TTCTACCAACAGG	.	246	23	304	0	.	142	T	73677972	C	T	73677972	4	4	47	1	0	0	0	0	0	1	0	0	535	595	21	3	4345	3	ALMS1	2	73677972	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		73677972	169521401	11	6809											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73800105	73800105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon16	c.C11098T	p.H3700Y	TCTCATCATCGAG	.	153	18	138	0	.	142	T	73800105	C	T	73800105	3	4	47	1	0	0	0	0	1	0	0	0	535	826	29	3	11160	3	ALMS1	2	73800105	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	122133	73800105	169399268	12	6810											
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128335798	128335798	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO7B	NM_001080527	exon9	c.G940T	p.E314X	GACTCCGAGAGCT	.	171	24	140	0	.	47	T	128335798	G	T	128335798	4	4	47	1	0	0	0	0	0	1	0	0	10083	1059	37	1	970	1	MYO7B	2	128335798	Nonsense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	54535693	128335798	114863575	13	6811											
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171260816	171260816	+	Silent	SNP	G	G	T	rs201316029	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO3B	NM_001083615	exon20	c.G2337T	p.P779P	CCGCCCGCTCTTG	.	210	41	225	0	G|0.999;A|0.001	530	T	171260816	G	T	171260816	2	4	47	1	0	0	0	0	0	0	0	1	10077	1074	38	1		1	MYO3B	2	171260816	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	42925018	171260816	71938557	14	6812											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179484372	179484372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTN	NM_001267550	exon250	c.G46672T	p.A15558S	CTCTGGCTTCTTT	.	314	48	312	1	.	636	A	179484372	C	A	179484372	3	1	47	1	0	0	0	0	1	0	0	0	16732	797	28	3	61473	3	TTN	2	179484372	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	8223556	179484372	63715001	15	6813											
SLC6A11	6538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10967702	10967702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC6A11	NM_014229	exon9	c.C1133A	p.A378D	GCCTGGCCTTTAT	.	242	47	205	1	.	132	A	10967702	C	A	10967702	3	1	47	1	0	0	0	0	1	0	0	0	14674	739	26	3	1167	3	SLC6A11	3	10967702	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		10967702	187054728	16	6814											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49151699	49151699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	USP19	NM_001199161	exon16	c.C2311G	p.P771A	GAAACGGGTCAAA	.	200	39	132	0	.	663	C	49151699	G	C	49151699	3	2	47	1	0	0	0	0	1	0	0	0	17047	1232	43	4	2002	4	USP19	3	49151699	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	38183997	49151699	148870731	17	6815											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52546358	52546358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STAB1	NM_015136	exon27	c.C2885T	p.A962V	CCCAGGCCACCTG	.	68	9	75	0	.	139	T	52546358	C	T	52546358	3	4	47	1	0	0	0	0	1	0	0	0	15236	753	26	3	2991	3	STAB1	3	52546358	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	3394659	52546358	145476072	18	6816											
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168819859	168819859	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MECOM	NM_004991	exon11	c.C2760T	p.R920R	GGTATAGCGCTCC	.	153	24	172	0	.	853	A	168819859	G	A	168819859	2	1	47	1	0	0	0	0	0	0	0	1	9422	958	34	3		3	MECOM	3	168819859	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	116273501	168819859	29202571	19	6817											
DGKG	1608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185986694	185986694	+	Missense_Mutation	SNP	C	C	G	rs199552752	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DGKG	NM_001346	exon12	c.G1012C	p.A338P	CCCATGCGTGCTG	.	63	6	54	0	.	714	G	185986694	C	G	185986694	3	3	47	1	0	0	0	0	1	0	0	0	4469	768	27	4	1419	4	DGKG	3	185986694	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	17166835	185986694	12035736	20	6818											
TNK2	10188	ucsc.edu;bcgsc.ca	37	3	195605439	195605439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TNK2	NM_001010938	exon8	c.G1228T	p.G410W	GCTCCCCCTCCTT	.	43	4	32	0	.	957	A	195605439	C	A	195605439	3	1	47	1	0	0	0	0	1	0	0	0	16315	623	22	3	2158	3	TNK2	3	195605439	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	9618745	195605439	2416991	21	6819											
OTOP1	133060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4199717	4199717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OTOP1	NM_177998	exon5	c.T844C	p.S282P	TTGTGGAGGCCAG	.	285	52	339	2	.	92	G	4199717	A	G	4199717	3	3	47	1	0	0	0	0	1	0	0	0	11305	304	11	2	1002	2	OTOP1	4	4199717	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10		4199717	186954559	22	6820											
PPBP	5473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74853684	74853684	+	Missense_Mutation	SNP	G	G	T	rs201755460	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPBP	NM_002704	exon1	c.C137A	p.A46E	CCTTTCGCCAAGT	.	229	51	291	0	.	93	T	74853684	G	T	74853684	3	4	47	1	0	0	0	0	1	0	0	0	12303	1087	38	1	261	1	PPBP	4	74853684	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	70653967	74853684	116300592	23	6821											
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74047313	74047313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GFM2	NM_032380	exon6	c.G310A	p.D104N	CATCATCAACATC	.	188	24	168	0	.	90	T	74047313	C	T	74047313	3	4	47	1	0	0	0	0	1	0	0	0	6342	826	29	3	2125	3	GFM2	5	74047313	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		74047313	106867947	24	6822											
PCDHA11	56138	broad.mit.edu;bcgsc.ca	37	5	140250040	140250040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHA11	NM_018902	exon1	c.C1352A	p.A451E	ACAATGCGCCTGC	.	336	35	311	1	.	67	A	140250040	C	A	140250040	3	1	47	1	0	0	0	0	1	0	0	0	11521	768	27	1	1354	1	PCDHA11	5	140250040	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	66202727	140250040	40665220	25	6823											
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140250371	140250371	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHA11	NM_018902	exon1	c.G1683A	p.A561A	CAACGCGCCGGCA	.	104	16	105	0	.	67	A	140250371	G	A	140250371	2	1	47	1	0	0	0	0	0	0	0	1	11521	1074	38	1		1	PCDHA11	5	140250371	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	331	140250371	40664889	26	6824											
PPP2R2B	5521	broad.mit.edu;bcgsc.ca	37	5	146435232	146435232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPP2R2B	NM_181674	exon1	c.A70G	p.R24G	ACCTTCTGTGTGG	.	158	15	141	0	.	659	C	146435232	T	C	146435232	3	2	47	1	0	0	0	0	1	0	0	0	12385	1567	55	2	1430	2	PPP2R2B	5	146435232	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	6184861	146435232	34480028	27	6825											
PPARGC1B	133522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149213132	149213132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPARGC1B	NM_133263	exon5	c.C1496T	p.P499L	TGGTCCCCTCGGA	.	102	21	89	0	.	186	T	149213132	C	T	149213132	3	4	47	1	0	0	0	0	1	0	0	0	12301	623	22	3	1521	3	PPARGC1B	5	149213132	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	2777900	149213132	31702128	28	6826											
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156768087	156768087	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CYFIP2	NM_001037332	exon23	c.G2595T	p.R865R	TGTGCGGACTGCC	.	251	42	245	0	.	22	T	156768087	G	T	156768087	2	4	47	1	0	0	0	0	0	0	0	1	4138	1161	41	3		3	CYFIP2	5	156768087	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	7554955	156768087	24147173	29	6827											
CUL7	9820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43012996	43012996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CUL7	NM_001168370	exon15	c.G3259A	p.D1087N	TGCGGTCCTCTGC	.	125	9	112	0	.	229	T	43012996	C	T	43012996	3	4	47	1	0	0	0	0	1	0	0	0	4060	855	30	3	2137	3	CUL7	6	43012996	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		43012996	128102071	30	6828											
TTBK1	84630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43230655	43230655	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTBK1	NM_032538	exon13	c.T1553A	p.V518E	CCTCTGTGGAGCA	.	156	26	117	1	.	353	A	43230655	T	A	43230655	3	1	47	1	0	0	0	0	1	0	0	0	16673	1696	59	4	1599	4	TTBK1	6	43230655	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	217659	43230655	127884412	31	6829											
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106978191	106978191	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AIM1	NM_001624	exon6	c.3494+1G>T	.	GGGCACGTAAGTA	.	114	26	142	1	.	139	T	106978191	G	T	106978191	5	4	47	1	0	0	0	0	0	0	1	0	430	1159	40	1	3517	1	AIM1	6	106978191	Splice_Site	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	63747536	106978191	64136876	32	6830											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18633535	18633535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HDAC9	NM_001204144	exon8	c.G664A	p.A222T	AGGGCTGCCCACC	.	146	23	216	0	.	227	A	18633535	G	A	18633535	3	1	47	1	0	0	0	0	1	0	0	0	7014	1319	46	3	565	3	HDAC9	7	18633535	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10		18633535	140505128	33	6831											
ZP3	7784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76062261	76062261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZP3	NM_001110354	exon3	c.G449T	p.S150I	TGAGCAGCCAGGC	.	103	19	95	0	.	90	T	76062261	G	T	76062261	3	4	47	1	0	0	0	0	1	0	0	0	18214	971	34	3	459	3	ZP3	7	76062261	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	57428726	76062261	83076402	34	6832											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82435139	82435139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCLO	NM_033026	exon21	c.C14798T	p.P4933L	TTGGGAGGCTTTG	.	187	17	216	0	.	29	A	82435139	G	A	82435139	3	1	47	1	0	0	0	0	1	0	0	0	11583	1000	35	3	650	3	PCLO	7	82435139	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	6372878	82435139	76703524	35	6833											
ATXN7L1	222255	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105254791	105254791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ATXN7L1	NM_020725	exon10	c.A1990G	p.T664A	GGGATGTCTGCAA	.	466	82	402	1	.	90	C	105254791	T	C	105254791	3	2	47	1	0	0	0	0	1	0	0	0	1216	1667	58	2	610	2	ATXN7L1	7	105254791	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	22819652	105254791	53883872	36	6834											
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133314872	133314872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EXOC4	NM_021807	exon10	c.G1492T	p.V498F	ATTACCGTCATAT	.	140	21	184	0	.	159	T	133314872	G	T	133314872	3	4	47	1	0	0	0	0	1	0	0	0	5306	1145	40	1	1539	1	EXOC4	7	133314872	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	28060081	133314872	25823791	37	6835											
MTMR7	9108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17198946	17198946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTMR7	NM_004686	exon6	c.G658A	p.E220K	TCTGCTCGTCCTC	.	88	23	102	1	.	91	T	17198946	C	T	17198946	3	4	47	1	0	0	0	0	1	0	0	0	9948	893	31	1	1360	1	MTMR7	8	17198946	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		17198946	129165076	38	6836											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	25898461	25898461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EBF2	NM_022659	exon3	c.A346C	p.S116R	CGTTGCTGTAGAG	.	647	62	562	0	.	26	G	25898461	T	G	25898461	3	3	47	1	0	0	0	0	1	0	0	0	4881	1580	55	5	1437	5	EBF2	8	25898461	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	8699515	25898461	120465561	39	6837											
STK3	6788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99560362	99560362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STK3	NM_001256312	exon11	c.A1060T	p.M354L	TCACCATGGTGTG	.	152	34	188	0	.	978	A	99560362	T	A	99560362	3	1	47	1	0	0	0	0	1	0	0	0	15294	1464	51	4	511	4	STK3	8	99560362	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	73661901	99560362	46803660	40	6838											
GRHL2	79977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	102611376	102611376	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRHL2	NM_024915	exon8	c.G1095A	p.A365A	AGAGGCGAAGGTG	.	298	60	304	0	.	93	A	102611376	G	A	102611376	2	1	47	1	0	0	0	0	0	0	0	1	6764	1045	37	1		1	GRHL2	8	102611376	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	3051014	102611376	43752646	41	6839											
CSMD3	114788	broad.mit.edu;bcgsc.ca	37	8	113402913	113402913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CSMD3	NM_198123	exon36	c.C5914T	p.P1972S	CCTCTGGCACTGT	.	123	6	98	0	.	1132	A	113402913	G	A	113402913	3	1	47	1	0	0	0	0	1	0	0	0	3946	1203	42	3	5353	3	CSMD3	8	113402913	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	10791537	113402913	32961109	42	6840											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139838990	139838990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	COL22A1	NM_152888	exon6	c.G880T	p.A294S	CAAAGGCGTACTC	.	138	35	121	0	.	103	A	139838990	C	A	139838990	3	1	47	1	0	0	0	0	1	0	0	0	3681	768	27	1	4240	1	COL22A1	8	139838990	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	26436077	139838990	6525032	43	6841											
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135413022	135413022	+	Missense_Mutation	SNP	C	C	T	rs182716958	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C9orf171	NM_207417	exon5	c.C667T	p.R223W	CAGCACCGGTACC	.	138	29	124	0	C|0.865;A|0.135	157	T	135413022	C	T	135413022	3	4	47	1	0	0	0	0	1	0	0	0	2470	643	23	1	685	1	C9orf171	9	135413022	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		135413022	5800409	44	6842											
PFKP	5214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3146084	3146084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PFKP	NM_002627	exon5	c.G568A	p.A190T	GACTCCGCCCTGC	.	72	17	60	0	.	253	A	3146084	G	A	3146084	3	1	47	1	0	0	0	0	1	0	0	0	11766	1087	38	1	586	1	PFKP	10	3146084	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10		3146084	132388663	45	6843											
PRKCQ	5588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6470193	6470193	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PRKCQ	NM_006257	exon18	c.C2097A	p.P699P	CATCCCGGGGTTC	.	205	39	187	1	.	1380	T	6470193	G	T	6470193	2	4	47	1	0	0	0	0	0	0	0	1	12515	1103	39	1		1	PRKCQ	10	6470193	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	3324109	6470193	129064554	46	6844											
LCOR	84458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	98715171	98715171	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LCOR	NM_001170766	exon8	c.794delG	p.W265fs	TTTCTTGGGAGTC	.	138	23	157	0	.	189	-	98715171	G	-	98715171	7	5	47	1	0	1	0	1	0	0	0	0	8689	1357	47	0	804	0	LCOR	10	98715171	Frame_Shift_Del	DEL	G	TCGA-DD-A114-01A-11D-A12Z-10	92244978	98715171	36819576	47	6845											
SORCS3	22986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106959776	106959776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SORCS3	NM_014978	exon15	c.C2029T	p.L677F	TTCAGCCTCCGCT	.	150	30	151	1	.	99	T	106959776	C	T	106959776	3	4	47	1	0	0	0	0	1	0	0	0	14932	681	24	3	2087	3	SORCS3	10	106959776	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	8244605	106959776	28574971	48	6846											
SLC18A2	6571	ucsc.edu;bcgsc.ca	37	10	119015145	119015145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC18A2	NM_003054	exon9	c.A872G	p.D291G	TGAAGGACCCGTA	.	40	4	49	0	.	90	G	119015145	A	G	119015145	3	3	47	1	0	0	0	0	1	0	0	0	14426	275	10	2	902	2	SLC18A2	10	119015145	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	12055369	119015145	16519602	49	6847											
OR52R1	119695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4825512	4825512	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR52R1	NM_001005177	exon1	c.G99T	p.P33P	ACAGAACGGAAAG	.	132	20	148	1	.	69	A	4825512	C	A	4825512	2	1	47	1	0	0	0	0	0	0	0	1	11131	523	19	1		1	OR52R1	11	4825512	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		4825512	130181004	50	6848											
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	22297639	22297639	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ANO5	NM_001142649	exon21	c.2412-1G>-	.	TTTTCAGGTACAG	.	287	31	200	0	.	515	-	22297639	G	-	22297639	8	5	47	1	0	1	0	1	0	0	1	0	700	1014	35	0	2496	0	ANO5	11	22297639	Splice_Site	DEL	G	TCGA-DD-A114-01A-11D-A12Z-10	17472127	22297639	112708877	51	6849											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137653	40137653	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LRRC4C	NM_001258419	exon7	c.C190A	p.R64R	TTTTCCGAACACA	.	155	20	157	0	.	521	T	40137653	G	T	40137653	2	4	47	1	0	0	0	0	0	0	0	1	9008	1057	37	1		1	LRRC4C	11	40137653	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	17840014	40137653	94868863	52	6850											
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135486	55135486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR4A15	NM_001005275	exon1	c.T127C	p.L43L	ATCCTCTTAGGGC	.	220	35	262	0	.	70	C	55135486	T	C	55135486	2	2	47	1	0	0	0	0	0	0	0	1	11040	1606	56	2		2	OR4A15	11	55135486	Silent	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	14997833	55135486	79871030	53	6851											
OR5T2	219464	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55999981	55999981	+	Silent	SNP	A	A	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR5T2	NM_001004746	exon1	c.T681G	p.S227S	AGAATAAGAAATA	.	658	95	655	1	.	70	C	55999981	A	C	55999981	2	2	47	1	0	0	0	0	0	0	0	1	11182	59	3	5		5	OR5T2	11	55999981	Silent	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	864495	55999981	79006535	54	6852											
TRIM49	57093	hgsc.bcm.edu;broad.mit.edu	37	11	89537604	89537604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRIM49	NM_020358	exon3	c.34delG	p.E12fs	TGAGTTCCCCCTG	.	394	36	438	0	.	84	-	89537604	C	-	89537604	7	5	47	1	0	1	0	1	0	0	0	0	16521	864	30	0	1348	0	TRIM49	11	89537604	Frame_Shift_Del	DEL	C	TCGA-DD-A114-01A-11D-A12Z-10	33537623	89537604	45468912	55	6853											
SLC37A4	2542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118896705	118896705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC37A4	NM_001467	exon8	c.G956T	p.R319L	GTTACCCGGAAGA	.	134	14	140	0	.	67	A	118896705	C	A	118896705	3	1	47	1	0	0	0	0	1	0	0	0	14600	652	23	1	415	1	SLC37A4	11	118896705	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	29359101	118896705	16109811	56	6854											
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123598880	123598880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF202	NM_003455	exon7	c.T793C	p.Y265H	AGACATATTCTCC	.	238	13	227	0	.	91	G	123598880	A	G	123598880	3	3	47	1	0	0	0	0	1	0	0	0	17760	449	16	2	1165	2	ZNF202	11	123598880	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	4702175	123598880	11407636	57	6855											
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	123600353	123600353	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF202	NM_003455	exon5	c.G583T	p.E195X	CCTCTTCCTGGTG	.	123	10	140	0	.	91	A	123600353	C	A	123600353	4	1	47	1	0	0	0	0	0	1	0	0	17760	864	30	3	1383	3	ZNF202	11	123600353	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	1473	123600353	11406163	58	6856											
SLC2A14	144195	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	7981450	7981450	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC2A14	NM_153449	exon7	c.G595T	p.E199X	TGAGTTCCAGACC	.	210	29	216	1	.	91	A	7981450	C	A	7981450	4	1	47	1	0	0	0	0	0	1	0	0	14543	864	30	3	991	3	SLC2A14	12	7981450	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		7981450	125870445	59	6857											
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	29617463	29617463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OVCH1	NM_183378	exon18	c.C2102A	p.T701N	CATCCGGTCACAG	.	142	20	148	0	.	210	T	29617463	G	T	29617463	3	4	47	1	0	0	0	0	1	0	0	0	11323	1261	44	3	1346	3	OVCH1	12	29617463	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	21636013	29617463	104234432	60	6858											
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39726715	39726715	+	Silent	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIF21A	NM_001173464	exon19	c.G2682C	p.T894T	TGCCGGCGTTGGT	.	187	37	177	0	.	97	G	39726715	C	G	39726715	2	3	47	1	0	0	0	0	0	0	0	1	8288	755	27	4		4	KIF21A	12	39726715	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	10109252	39726715	94125180	61	6859											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49443882	49443882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLL2	NM_003482	exon11	c.G3489T	p.V1163V	AGGGGTCACAGGG	.	157	23	124	0	.	612	A	49443882	C	A	49443882	2	1	47	1	0	0	0	0	0	0	0	1	9621	813	29	3		3	MLL2	12	49443882	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	9717167	49443882	84408013	62	6860											
BCDIN3D	144233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50236856	50236856	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BCDIN3D	NM_181708	exon1	c.G15T	p.T5T	CAGTTCCGTGGGC	.	88	16	55	0	.	69	A	50236856	C	A	50236856	2	1	47	1	0	0	0	0	0	0	0	1	1357	639	23	1		1	BCDIN3D	12	50236856	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	792974	50236856	83615039	63	6861											
KRT5	3852	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52910560	52910560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRT5	NM_000424	exon7	c.G1300T	p.E434X	CCAGCTCGGCCAG	.	202	28	206	1	.	90	A	52910560	C	A	52910560	4	1	47	1	0	0	0	0	0	1	0	0	8479	893	31	1	484	1	KRT5	12	52910560	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	2673704	52910560	80941335	64	6862											
LTA4H	4048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96406996	96406996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LTA4H	NM_000895	exon14	c.A1349C	p.Y450S	GGAGAGTAGAGCC	.	171	24	166	1	.	91	G	96406996	T	G	96406996	3	3	47	1	0	0	0	0	1	0	0	0	9069	1638	57	5	510	5	LTA4H	12	96406996	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	43496436	96406996	37444899	65	6863											
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105464456	105464456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALDH1L2	NM_001034173	exon3	c.T320C	p.F107S	GTGCAGAAAGGGA	.	335	62	307	0	.	91	G	105464456	A	G	105464456	3	3	47	1	0	0	0	0	1	0	0	0	495	246	9	2	2535	2	ALDH1L2	12	105464456	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	9057460	105464456	28387439	66	6864											
PITPNM2	57605	ucsc.edu;bcgsc.ca	37	12	123472131	123472131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PITPNM2	NM_020845	exon21	c.G3190T	p.G1064W	CACGCCCACTGTT	.	76	9	72	0	.	228	A	123472131	C	A	123472131	3	1	47	1	0	0	0	0	1	0	0	0	11951	594	21	3	879	3	PITPNM2	12	123472131	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	18007675	123472131	10379764	67	6865											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124387605	124387605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DNAH10	NM_207437	exon56	c.G9406A	p.E3136K	ATCCTGGAGGCCG	.	96	19	112	0	.	95	A	124387605	G	A	124387605	3	1	47	1	0	0	0	0	1	0	0	0	4598	1175	41	3	9628	3	DNAH10	12	124387605	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	915474	124387605	9464290	68	6866											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23904756	23904756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SACS	NM_014363	exon10	c.G13259T	p.C4420F	GGGGGGCATTTTT	.	151	35	129	0	.	298	A	23904756	C	A	23904756	3	1	47	1	0	0	0	0	1	0	0	0	13804	710	25	3	484	3	SACS	13	23904756	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		23904756	91265122	69	6867											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	49030478	49030479	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RB1	NM_000321	exon19	c.1953_1954insA	p.Y651fs	GTTTTATAAAAAA	.	103	19	126	0	.	3784	A	49030479	-	A	49030478	7	5	47	1	0	1	1	0	0	0	0	0	13098	1413	49	0	2027	0	RB1	13	49030478	Frame_Shift_Ins	INS	-	TCGA-DD-A114-01A-11D-A12Z-10	25125722	49030478	66139400	70	6868											
COMMD6	170622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	76111799	76111799	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	COMMD6	NM_203497	exon3	c.54+1G>T	.	CACCCACCTGGTT	.	78	13	63	0	.	90	A	76111799	C	A	76111799	5	1	47	1	0	0	0	0	0	0	1	0	3720	521	18	3	257	3	COMMD6	13	76111799	Splice_Site	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	27081321	76111799	39058079	71	6869											
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86370026	86370026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLITRK6	NM_032229	exon2	c.C618A	p.H206Q	GCCAATGTGTTCG	.	131	24	120	0	.	137	T	86370026	G	T	86370026	3	4	47	1	0	0	0	0	1	0	0	0	14747	1368	48	3	1911	3	SLITRK6	13	86370026	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	10258227	86370026	28799852	72	6870											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu	37	14	23889251	23889251	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYH7	NM_000257	exon27	c.3529delG	p.D1177fs	CCAGGTCCCGCCG	.	330	34	189	0	.	94	-	23889251	C	-	23889251	7	5	47	1	0	1	0	1	0	0	0	0	10039	855	30	0	2334	0	MYH7	14	23889251	Frame_Shift_Del	DEL	C	TCGA-DD-A114-01A-11D-A12Z-10		23889251	83460289	73	6871											
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62551067	62551067	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SYT16	NM_031914	exon5	c.A1588T	p.S530C	AAAGGCAGCCATT	.	113	22	80	0	.	23	T	62551067	A	T	62551067	3	4	47	1	0	0	0	0	1	0	0	0	15469	188	7	4	1606	4	SYT16	14	62551067	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	38661816	62551067	44798473	74	6872											
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92949118	92949118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC24A4	NM_153646	exon13	c.G1350T	p.E450D	CTGGGAGAAGTTC	.	135	20	146	0	.	93	T	92949118	G	T	92949118	3	4	47	1	0	0	0	0	1	0	0	0	14468	933	33	3	1349	3	SLC24A4	14	92949118	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	30398051	92949118	14400422	75	6873											
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103430853	103430853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CDC42BPB	NM_006035	exon19	c.C2712A	p.N904K	GGTGAGGTTGGCG	.	60	13	58	0	.	581	T	103430853	G	T	103430853	3	4	47	1	0	0	0	0	1	0	0	0	3073	1252	44	3	2499	3	CDC42BPB	14	103430853	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	10481735	103430853	3918687	76	6874											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2098719	2098719	+	Nonsense_Mutation	SNP	C	C	T	rs137854105		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TSC2	NM_001114382	exon2	c.C103T	p.Q35X	GGTAAACAGACGG	.	264	59	227	0	.	1908	T	2098719	C	T	2098719	4	4	47	1	0	0	0	0	0	1	0	0	16603	479	17	3	105	3	TSC2	16	2098719	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		2098719	88256034	77	6875											
MLST8	64223	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2256103	2256103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLST8	NM_001199174	exon2	c.G17C	p.G6A	CCCCAGGCACGGT	.	114	38	103	1	.	392	C	2256103	G	C	2256103	3	2	47	1	0	0	0	0	1	0	0	0	9634	1203	42	4	19	4	MLST8	16	2256103	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	157384	2256103	88098650	78	6876											
LONP2	83752	ucsc.edu;bcgsc.ca	37	16	48286049	48286049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LONP2	NM_031490	exon2	c.A241G	p.T81A	ATTGGCACAGCTG	.	58	6	62	0	.	90	G	48286049	A	G	48286049	3	3	47	1	0	0	0	0	1	0	0	0	8893	159	6	2	247	2	LONP2	16	48286049	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	46029946	48286049	42068704	79	6877											
DPEP2	64174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68027109	68027109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DPEP2	NM_022355	exon2	c.C7A	p.P3T	CGGAGGGCTGCAT	.	68	17	47	0	.	91	T	68027109	G	T	68027109	3	4	47	1	0	0	0	0	1	0	0	0	4714	1203	42	3	1493	3	DPEP2	16	68027109	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	19741060	68027109	22327644	80	6878											
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81927388	81927388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLCG2	NM_002661	exon12	c.G1061T	p.R354L	GCTGTCGCTGCAT	.	74	13	90	0	.	892	T	81927388	G	T	81927388	3	4	47	1	0	0	0	0	1	0	0	0	12036	1087	38	1	1103	1	PLCG2	16	81927388	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	13900279	81927388	8427365	81	6879											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	172	34	202	2	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	47	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		7577534	73617676	82	6880											
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27251239	27251239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PHF12	NM_020889	exon4	c.G403T	p.D135Y	CAGTGTCACTGCT	.	212	48	172	0	.	91	A	27251239	C	A	27251239	3	1	47	1	0	0	0	0	1	0	0	0	11823	826	29	3	2685	3	PHF12	17	27251239	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	19673705	27251239	53943971	83	6881											
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38289863	38289868	+	In_Frame_Del	DEL	CAGGAA	CAGGAA	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	CAGGAA	CAGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MSL1	NM_001012241	exon8	c.844_849del	p.282_283del	GGAATTCAGGAAT	.	104	17	129	0	.	68	-	38289868	CAGGAA	-	38289863	7	5	47	1	0	1	0	1	0	0	0	0	9877	827	29	0	866	0	MSL1	17	38289863	In_Frame_Del	DEL	CAGGAA	TCGA-DD-A114-01A-11D-A12Z-10	11038624	38289863	42905347	84	6882											
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39522752	39522752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRT33B	NM_002279	exon3	c.G558T	p.E186D	CAGCAGCTCCTCC	.	95	19	128	0	.	90	A	39522752	C	A	39522752	3	1	47	1	0	0	0	0	1	0	0	0	8470	796	28	3	676	3	KRT33B	17	39522752	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	1232889	39522752	41672458	85	6883											
PLCD3	113026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43195840	43195840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLCD3	.	.	.	.	CAGTGTCATCAGC	.	166	65	88	1	.	703	A	43195840	C	A	43195840	3	1	47	1	0	0	0	0	1	0	0	0	12032	826	29	3	1475	3	PLCD3	17	43195840	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	3673088	43195840	37999370	86	6884											
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45017921	45017921	+	Missense_Mutation	SNP	G	G	T	rs147434599	byfrequency;alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GOSR2	NM_054022	exon7	c.G584T	p.G195V	CCCCAGGCACCCA	.	56	17	31	0	G|0.999;C|0.001	92	T	45017921	G	T	45017921	3	4	47	1	0	0	0	0	1	0	0	0	6578	1217	42	3	777	3	GOSR2	17	45017921	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	1822081	45017921	36177289	87	6885											
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56582859	56582859	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTMR4	NM_004687	exon11	c.G1077T	p.V359V	GCTACACACAGCC	.	152	26	121	0	.	91	A	56582859	C	A	56582859	2	1	47	1	0	0	0	0	0	0	0	1	9946	465	17	3		3	MTMR4	17	56582859	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	11564938	56582859	24612351	88	6886											
AXIN2	8313	broad.mit.edu;bcgsc.ca	37	17	63532595	63532595	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AXIN2	NM_004655	exon8	c.C1984T	p.L662L	CCCACAGATGGTG	.	123	18	57	0	.	658	A	63532595	G	A	63532595	2	1	47	1	0	0	0	0	0	0	0	1	1237	933	33	3		3	AXIN2	17	63532595	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	6949736	63532595	17662615	89	6887											
L3MBTL4	91133	ucsc.edu;bcgsc.ca	37	18	6138293	6138293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	L3MBTL4	NM_173464	exon14	c.A1099G	p.T367A	CATTCGTTCCTTC	.	42	4	44	0	.	93	C	6138293	T	C	6138293	3	2	47	1	0	0	0	0	1	0	0	0	8594	1725	60	2	800	2	L3MBTL4	18	6138293	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10		6138293	71938955	90	6888											
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34647292	34647292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIAA1328	NM_020776	exon7	c.G1016C	p.R339P	ATTGTCGGCTTTC	.	435	68	538	0	.	90	C	34647292	G	C	34647292	3	2	47	1	0	0	0	0	1	0	0	0	8225	1116	39	4	1042	4	KIAA1328	18	34647292	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	28508999	34647292	43429956	91	6889											
MC4R	4160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	58039123	58039123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MC4R	NM_005912	exon1	c.G460T	p.A154S	GGAGAGCATAGAA	.	99	14	121	0	.	522	A	58039123	C	A	58039123	3	1	47	1	0	0	0	0	1	0	0	0	9366	710	25	3	542	3	MC4R	18	58039123	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	23391831	58039123	20038125	92	6890											
SERPINB4	6318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61308143	61308143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SERPINB4	NM_002974	exon5	c.A434G	p.K145R	ATCTTCTTTCGAC	.	463	77	512	0	.	228	C	61308143	T	C	61308143	3	2	47	1	0	0	0	0	1	0	0	0	14103	1609	56	2	754	2	SERPINB4	18	61308143	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	3269020	61308143	16769105	93	6891											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	72775861	72775861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF407	NM_017757	exon8	c.C6184T	p.P2062S	GTCCATCCCTCAG	.	94	9	74	0	.	92	T	72775861	C	T	72775861	3	4	47	1	0	0	0	0	1	0	0	0	17884	855	30	3	6344	3	ZNF407	18	72775861	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	11467718	72775861	5301387	94	6892											
OR2Z1	284383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8842140	8842140	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2Z1	NM_001004699	exon1	c.C750A	p.L250L	GGGGCTCTTTTAT	.	231	33	172	1	.	69	A	8842140	C	A	8842140	2	1	47	1	0	0	0	0	0	0	0	1	11036	900	32	3		3	OR2Z1	19	8842140	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		8842140	50286843	95	6893											
OR7D4	125958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9324917	9324917	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR7D4	NM_001005191	exon1	c.G597A	p.L199L	CACATACAAGACA	.	186	33	146	0	.	71	T	9324917	C	T	9324917	2	4	47	1	0	0	0	0	0	0	0	1	11220	477	17	3		3	OR7D4	19	9324917	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	482777	9324917	49804066	96	6894											
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11213382	11213382	+	Missense_Mutation	SNP	G	G	T	rs146675823	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LDLR	NM_001195800	exon3	c.G233T	p.R78L	GGGGCCGTGTCAA	.	230	44	230	0	G|1.000;A|0.000	94	T	11213382	G	T	11213382	3	4	47	1	0	0	0	0	1	0	0	0	8704	1145	40	1	243	1	LDLR	19	11213382	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	1888465	11213382	47915601	97	6895											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	30935048	30935048	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF536	NM_014717	exon2	c.C579T	p.R193R	TGTGCGCGAGGAG	.	50	12	32	0	.	144	T	30935048	C	T	30935048	2	4	47	1	0	0	0	0	0	0	0	1	17971	755	27	1		1	ZNF536	19	30935048	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	19721666	30935048	28193935	98	6896											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38974064	38974064	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RYR1	NM_001042723	exon33	c.G4842A	p.V1614V	GCAGGTGGAGACG	.	76	13	91	0	.	100	A	38974064	G	A	38974064	2	1	47	1	0	0	0	0	0	0	0	1	13768	1335	47	3		3	RYR1	19	38974064	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	8039016	38974064	20154919	99	6897											
CEACAM4	1089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42132051	42132051	+	Missense_Mutation	SNP	G	G	T	rs199959927	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CEACAM4	NM_001817	exon2	c.C348A	p.D116E	TCCTGCGTCCTCC	.	590	108	540	0	G|0.999;A|0.001	90	T	42132051	G	T	42132051	3	4	47	1	0	0	0	0	1	0	0	0	3194	1136	40	1	410	1	CEACAM4	19	42132051	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	3157987	42132051	16996932	100	6898											
PVRL2	5819	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	45391367	45391367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PVRL2	NM_001042724	exon9	c.G1348T	p.E450X	CTCCAGGAAATGC	.	249	53	193	1	.	90	T	45391367	G	T	45391367	4	4	47	1	0	0	0	0	0	1	0	0	12840	1188	41	3	1784	3	PVRL2	19	45391367	Nonsense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	3259316	45391367	13737616	101	6899											
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46318184	46318184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RSPH6A	NM_030785	exon1	c.G251T	p.G84V	TCCATGCCACCCA	.	112	11	77	0	.	91	A	46318184	C	A	46318184	3	1	47	1	0	0	0	0	1	0	0	0	13707	739	26	3	1926	3	RSPH6A	19	46318184	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	926817	46318184	12810799	102	6900											
CCDC155	147872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49920647	49920647	+	Silent	SNP	C	C	A	rs182291239	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CCDC155	NM_144688	exon20	c.C1569A	p.I523I	ACTGATCCCAGCT	.	137	30	105	0	C|0.999;T|0.000	69	A	49920647	C	A	49920647	2	1	47	1	0	0	0	0	0	0	0	1	2788	845	30	3		3	CCDC155	19	49920647	Silent	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	3602463	49920647	9208336	103	6901											
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53761860	53761860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	VN1R2	NM_173856	exon1	c.T232G	p.S78A	CTTGTCTCTGCAC	.	135	26	90	0	.	90	G	53761860	T	G	53761860	3	3	47	1	0	0	0	0	1	0	0	0	17176	1551	54	5	234	5	VN1R2	19	53761860	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10	3841213	53761860	5367123	104	6902											
ZNF154	7710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58216279	58216279	+	Silent	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF154	NM_001085384	exon2	c.T102A	p.A34A	TCTTTGAGCCTCA	.	266	30	314	0	.	90	T	58216279	A	T	58216279	2	4	47	1	0	0	0	0	0	0	0	1	17732	291	11	4		4	ZNF154	19	58216279	Silent	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	4454419	58216279	912704	105	6903											
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58967236	58967236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF324B	NM_207395	exon4	c.G925T	p.G309C	CACAGCGGCGAGA	.	158	23	185	0	.	91	T	58967236	G	T	58967236	3	4	47	1	0	0	0	0	1	0	0	0	17842	1116	39	1	935	1	ZNF324B	19	58967236	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	750957	58967236	161747	106	6904											
GNRH2	2797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3025397	3025397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GNRH2	NM_001501	exon3	c.C227T	p.P76L	TGGCTCCCCTGGA	.	110	12	96	0	.	90	T	3025397	C	T	3025397	3	4	47	1	0	0	0	0	1	0	0	0	6548	623	22	3	233	3	GNRH2	20	3025397	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		3025397	60000123	107	6905											
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37154091	37154091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RALGAPB	NM_020336	exon12	c.G1832C	p.R611P	AATTGCGAAGATC	.	607	105	711	0	.	92	C	37154091	G	C	37154091	3	2	47	1	0	0	0	0	1	0	0	0	13015	1058	37	4	1874	4	RALGAPB	20	37154091	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	34128694	37154091	25871429	108	6906											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46279951	46279951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NCOA3	NM_181659	exon20	c.G3877T	p.D1293Y	AGCATGGATGGGC	.	133	22	139	0	.	229	T	46279951	G	T	46279951	3	4	47	1	0	0	0	0	1	0	0	0	10230	1174	41	3	3977	3	NCOA3	20	46279951	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	9125860	46279951	16745569	109	6907											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62340061	62340061	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZGPAT	NM_032527	exon2	c.G129T	p.L43L	GGACCTGAAGGAG	.	59	11	63	0	.	90	T	62340061	G	T	62340061	2	4	47	1	0	0	0	0	0	0	0	1	17671	1277	45	3		3	ZGPAT	20	62340061	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	16060110	62340061	685459	110	6908											
KRTAP19-4	337971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31869199	31869199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRTAP19-4	NM_181610	exon1	c.G230T	p.R77I	AATGATCTTCTTA	.	239	32	250	0	.	70	A	31869199	C	A	31869199	3	1	47	1	0	0	0	0	1	0	0	0	8531	913	32	3	27	3	KRTAP19-4	21	31869199	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10		31869199	16260696	111	6909											
TMPRSS3	64699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43802158	43802158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TMPRSS3	NM_032405	exon9	c.T968C	p.L323P	CCACATAGAGACC	.	150	14	160	1	.	155	G	43802158	A	G	43802158	3	3	47	1	0	0	0	0	1	0	0	0	16245	420	15	2	499	2	TMPRSS3	21	43802158	Missense_Mutation	SNP	A	TCGA-DD-A114-01A-11D-A12Z-10	11932959	43802158	4327737	112	6910											
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31534717	31534717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLA2G3	NM_015715	exon2	c.C583A	p.Q195K	TGTACTGCAAGGG	.	544	95	593	1	.	226	T	31534717	G	T	31534717	3	4	47	1	0	0	0	0	1	0	0	0	12000	1328	46	3	970	3	PLA2G3	22	31534717	Missense_Mutation	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10		31534717	19769849	113	6911											
GRAP2	9402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40343142	40343142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRAP2	NM_004810	exon2	c.C32A	p.A11D	TCACTGCTTCAGG	.	263	68	338	0	.	227	A	40343142	C	A	40343142	3	1	47	1	0	0	0	0	1	0	0	0	6754	797	28	3	34	3	GRAP2	22	40343142	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	8808425	40343142	10961424	114	6912											
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12939183	12939183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TLR8	NM_138636	exon2	c.T2024C	p.M675T	ATAATATGTTAAA	.	134	47	87	0	.	629	C	12939183	T	C	12939183	3	2	47	1	0	0	0	0	1	0	0	0	15954	1464	51	2	2030	2	TLR8	23	12939183	Missense_Mutation	SNP	T	TCGA-DD-A114-01A-11D-A12Z-10		12939183	142331377	115	6913											
TRO	7216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	54955568	54955598	+	Frame_Shift_Del	DEL	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRO	NM_001039705	exon12	c.2411_2441del	p.804_814del	GCACTAGTTTCAG	.	145	0	136	0	.	131	-	54955598	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	-	54955568	7	5	47	1	0	1	0	1	0	0	0	0	16571	1029	36	0	2453	0	TRO	23	54955568	Frame_Shift_Del	DEL	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	TCGA-DD-A114-01A-11D-A12Z-10	42016385	54955568	100314992	116	6914											
SPIN4	139886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62570624	62570624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SPIN4	NM_001012968	exon1	c.C75T	p.H25H	CTTCCTGTGGGTG	.	84	44	89	0	.	109	A	62570624	G	A	62570624	2	1	47	1	0	0	0	0	0	0	0	1	15055	1368	48	3		3	SPIN4	23	62570624	Silent	SNP	G	TCGA-DD-A114-01A-11D-A12Z-10	7615056	62570624	92699936	117	6915											
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	75004287	75004287	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MAGEE2	NM_138703	exon1	c.G600A	p.W200X	CAAGTCCCAAATG	.	110	26	69	0	.	132	T	75004287	C	T	75004287	4	4	47	1	0	0	0	0	0	1	0	0	9186	624	22	3	975	3	MAGEE2	23	75004287	Nonsense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	12433663	75004287	80266273	118	6916											
CHM	1121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85218969	85218969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CHM	NM_000390	exon5	c.G403C	p.D135H	CAGAATCTGCAGC	.	320	63	254	1	.	131	G	85218969	C	G	85218969	3	3	47	1	0	0	0	0	1	0	0	0	3350	913	32	4	1602	4	CHM	23	85218969	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	10214682	85218969	70051591	119	6917											
PCDH11X	27328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	91090988	91090988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDH11X	NM_001168363	exon1	c.C485T	p.A162V	TCCCAGCGGCTGT	.	244	101	178	1	.	193	T	91090988	C	T	91090988	3	4	47	1	0	0	0	0	1	0	0	0	11508	768	27	1	487	1	PCDH11X	23	91090988	Missense_Mutation	SNP	C	TCGA-DD-A114-01A-11D-A12Z-10	5872019	91090988	64179572	120	6918											
TNFRSF25	8718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6522204	6522204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TNFRSF25	NM_148965	exon9	c.C802T	p.H268Y	GGGTGTGGGCGCT	.	102	35	146	0	.	714	A	6522204	G	A	6522204	3	1	48	1	0	0	0	0	1	0	0	0	16293	1348	47	3	486	3	TNFRSF25	1	6522204	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		6522204	242728417	1	6919											
SF3A3	10946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38453345	38453345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SF3A3	NM_006802	exon4	c.G203A	p.R68Q	TCCTTTCGTAATC	.	131	54	220	0	.	90	T	38453345	C	T	38453345	3	4	48	1	0	0	0	0	1	0	0	0	14148	884	31	1	1358	1	SF3A3	1	38453345	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	31931141	38453345	210797276	2	6920											
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40839819	40839819	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SMAP2	NM_022733	exon1	c.G27A	p.V9V	GGACGTGGATCGG	.	124	47	198	0	.	68	A	40839819	G	A	40839819	2	1	48	1	0	0	0	0	0	0	0	1	14767	1335	47	3		3	SMAP2	1	40839819	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	2386474	40839819	208410802	3	6921											
MKNK1	8569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47028365	47028365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MKNK1	NM_003684	exon11	c.G919A	p.A307T	AGTCGGCCCCGCA	.	59	11	77	0	.	978	T	47028365	C	T	47028365	3	4	48	1	0	0	0	0	1	0	0	0	9604	739	26	3	494	3	MKNK1	1	47028365	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	6188546	47028365	202222256	4	6922											
MTF2	22823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	93599749	93599749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MTF2	NM_007358	exon14	c.1421delA	p.Y474fs	GGCATTATGGGTA	.	121	50	190	0	.	92	-	93599749	A	-	93599749	7	5	48	1	0	1	0	1	0	0	0	0	9923	449	16	0	1475	0	MTF2	1	93599749	Frame_Shift_Del	DEL	A	TCGA-DD-A115-01A-11D-A12Z-10	46571384	93599749	155650872	5	6923											
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154988092	154988092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZBTB7B	NM_001252406	exon4	c.G1058A	p.S353N	ACCTAAGCTCCCT	.	93	16	91	0	.	90	A	154988092	G	A	154988092	3	1	48	1	0	0	0	0	1	0	0	0	17551	971	34	3	958	3	ZBTB7B	1	154988092	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	61388343	154988092	94262529	6	6924											
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161017651	161017651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ARHGAP30	NM_001025598	exon12	c.T3160A	p.S1054T	CTTCAGATGGGAG	.	79	35	114	0	.	25	T	161017651	A	T	161017651	3	4	48	1	0	0	0	0	1	0	0	0	879	333	12	4	149	4	ARHGAP30	1	161017651	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	6029559	161017651	88232970	7	6925											
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247615107	247615108	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	p.H60N	GGCTGTGGAGTTG	.	88	34	124	0	.	.	TT	247615108	GG	TT	247615107	3	4	48	1	0	0	0	0	1	0	0	0	10988	1348	47	3	778	3	OR2B11	1	247615107	Missense_Mutation	DNP	GG	TCGA-DD-A115-01A-11D-A12Z-10	86597456	247615107	1635514	8	6926											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	1946920	1946920	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYT1L	NM_015025	exon9	c.C339T	p.D113D	ATCATTGTCCTCG	.	509	26	555	0	.	95	A	1946920	G	A	1946920	2	1	48	1	0	0	0	0	0	0	0	1	10107	1368	48	3		3	MYT1L	2	1946920	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		1946920	241252453	9	6927											
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70315174	70315174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PCBP1	NM_006196	exon1	c.T299A	p.L100Q	TCACCCTGAGGCT	.	30	10	57	0	.	226	A	70315174	T	A	70315174	3	1	48	1	0	0	0	0	1	0	0	0	11500	1580	55	4	301	4	PCBP1	2	70315174	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	68368254	70315174	172884199	10	6928											
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	71043634	71043634	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CLEC4F	NM_173535	exon4	c.G879C	p.Q293H	TGTGTTCTGCAAA	.	297	19	428	0	.	95	G	71043634	C	G	71043634	3	3	48	1	0	0	0	0	1	0	0	0	3516	912	32	4	906	4	CLEC4F	2	71043634	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	728460	71043634	172155739	11	6929											
TEX261	113419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71215838	71215838	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TEX261	NM_144582	exon6	c.C483T	p.V161V	GGAGACGACATCA	.	68	27	101	0	.	90	A	71215838	G	A	71215838	2	1	48	1	0	0	0	0	0	0	0	1	15779	1045	37	1		1	TEX261	2	71215838	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	172204	71215838	171983535	12	6930											
CTNNA2	1496	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80101327	80101327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CTNNA2	NM_001164883	exon6	c.A711G	p.R237R	TACGAGAGCCAAC	.	55	7	109	0	.	368	G	80101327	A	G	80101327	2	3	48	1	0	0	0	0	0	0	0	1	4013	301	11	2		2	CTNNA2	2	80101327	Silent	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	8885489	80101327	163098046	13	6931											
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101580593	101580593	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NPAS2	NM_002518	exon8	c.T672C	p.V224V	GGAGGTTTGCTTC	.	88	31	138	0	.	94	C	101580593	T	C	101580593	2	2	48	1	0	0	0	0	0	0	0	1	10563	1828	64	2		2	NPAS2	2	101580593	Silent	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	21479266	101580593	141618780	14	6932											
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152732958	152732958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CACNB4	NM_001145798	exon5	c.G503C	p.R168T	CGTCCTCTTTTTT	.	63	28	279	0	.	24	G	152732958	C	G	152732958	3	3	48	1	0	0	0	0	1	0	0	0	2555	913	32	4	1099	4	CACNB4	2	152732958	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	51152365	152732958	90466415	15	6933											
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172691267	172691267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC25A12	NM_003705	exon7	c.G721T	p.G241C	TTGTGCCAGCTAG	.	47	8	112	0	.	90	A	172691267	C	A	172691267	3	1	48	1	0	0	0	0	1	0	0	0	14474	594	21	3	1363	3	SLC25A12	2	172691267	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	19958309	172691267	70508106	16	6934											
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202633600	202633600	+	Silent	SNP	T	T	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ALS2	NM_001135745	exon2	c.A9C	p.S3S	CTTCTTTGAGTCC	.	72	22	140	0	.	275	G	202633600	T	G	202633600	2	3	48	1	0	0	0	0	0	0	0	1	550	1799	63	5		5	ALS2	2	202633600	Silent	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	29942333	202633600	40565773	17	6935											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242343251	242343251	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FARP2	NM_014808	exon3	c.C192T	p.C64C	TAAATGCGATGGC	.	100	20	192	0	.	93	T	242343251	C	T	242343251	2	4	48	1	0	0	0	0	0	0	0	1	5677	776	27	1		1	FARP2	2	242343251	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	39709651	242343251	856122	18	6936											
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	12195189	12195189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TIMP4	NM_003256	exon5	c.501delC	p.P167fs	GGTACAGGGTACT	.	105	23	202	0	.	226	-	12195189	G	-	12195189	7	5	48	1	0	1	0	1	0	0	0	0	15917	987	35	0	177	0	TIMP4	3	12195189	Frame_Shift_Del	DEL	G	TCGA-DD-A115-01A-11D-A12Z-10		12195189	185827241	19	6937											
TRIM71	131405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32915309	32915309	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRIM71	NM_001039111	exon2	c.853-1G>A	.	TCCCCAGGTGCTG	.	199	32	299	0	.	92	A	32915309	G	A	32915309	5	1	48	1	0	0	0	0	0	0	1	0	16541	1014	35	3	858	3	TRIM71	3	32915309	Splice_Site	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	20720120	32915309	165107121	20	6938											
CEP97	79598	hgsc.bcm.edu;bcgsc.ca	37	3	101481359	101481360	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CEP97	NM_024548	exon10	c.1848_1849insA	p.I616fs	ACGTATTAAAAAA	.	281	51	511	0	.	70	A	101481360	-	A	101481359	7	5	48	1	0	1	1	0	0	0	0	0	3263	1742	61	0	1886	0	CEP97	3	101481359	Frame_Shift_Ins	INS	-	TCGA-DD-A115-01A-11D-A12Z-10	68566050	101481359	96541071	21	6939											
GTF2E1	2960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120469757	120469757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GTF2E1	NM_005513	exon2	c.G358A	p.D120N	GAGAGAGATTCGA	.	116	61	155	0	.	91	A	120469757	G	A	120469757	3	1	48	1	0	0	0	0	1	0	0	0	6856	942	33	3	360	3	GTF2E1	3	120469757	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	18988398	120469757	77552673	22	6940											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129275500	129275500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLXND1	NM_015103	exon35	c.T5621C	p.M1874T	TCTGCCATGGCCA	.	148	55	179	0	.	90	G	129275500	A	G	129275500	3	3	48	1	0	0	0	0	1	0	0	0	12127	217	8	2	164	2	PLXND1	3	129275500	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	8805743	129275500	68746930	23	6941											
NAAA	27163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76861223	76861223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NAAA	NM_014435	exon2	c.G302T	p.G101V	CACATGCCGCGGA	.	57	22	121	0	.	91	A	76861223	C	A	76861223	3	1	48	1	0	0	0	0	1	0	0	0	10127	739	26	3	820	3	NAAA	4	76861223	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10		76861223	114293053	24	6942											
STBD1	8987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77230589	77230589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STBD1	NM_003943	exon2	c.G513T	p.E171D	TGCAGAGAAGTTG	.	109	42	146	0	.	69	T	77230589	G	T	77230589	3	4	48	1	0	0	0	0	1	0	0	0	15273	933	33	3	519	3	STBD1	4	77230589	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	369366	77230589	113923687	25	6943											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79503384	79503384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANXA3	NM_005139	exon5	c.G252A	p.M84I	TCTCATGGTGGCC	.	157	62	304	0	.	90	A	79503384	G	A	79503384	3	1	48	1	0	0	0	0	1	0	0	0	719	1348	47	3	266	3	ANXA3	4	79503384	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	2272795	79503384	111650892	26	6944											
GHR	2690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	42713546	42713546	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GHR	NM_001242399	exon8	c.G821A	p.W274X	TTCCATGGCTCTT	.	158	49	425	0	.	659	A	42713546	G	A	42713546	4	1	48	1	0	0	0	0	0	1	0	0	6371	1357	47	3	826	3	GHR	5	42713546	Nonsense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		42713546	138201714	27	6945											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	139193051	139193051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PSD2	NM_032289	exon3	c.G529T	p.E177X	AGCTTCGAGGCCC	.	96	50	144	0	.	91	T	139193051	G	T	139193051	4	4	48	1	0	0	0	0	0	1	0	0	12647	1059	37	1	535	1	PSD2	5	139193051	Nonsense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	96479505	139193051	41722209	28	6946											
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249239	140249239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PCDHA11	NM_018902	exon1	c.C551T	p.T184I	CACCAACAAATGG	.	58	9	58	0	.	67	T	140249239	C	T	140249239	3	4	48	1	0	0	0	0	1	0	0	0	11521	478	17	3	553	3	PCDHA11	5	140249239	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	1056188	140249239	40666021	29	6947											
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	10894136	10894136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SYCP2L	NM_001040274	exon3	c.G115T	p.G39X	GATAAAGGATTTC	.	173	70	285	0	.	24	T	10894136	G	T	10894136	4	4	48	1	0	0	0	0	0	1	0	0	15430	1001	35	3	125	3	SYCP2L	6	10894136	Nonsense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		10894136	160220931	30	6948											
HIST1H4K	8362	broad.mit.edu;mdanderson.org	37	6	27799305	27799305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HIST1H4K	NM_003541	exon1	c.A1C	p.M1L	CAGACATGACGAG	.	138	37	223	1	.	90	G	27799305	T	G	27799305	3	3	48	1	0	0	0	0	1	0	0	0	7175	1478	51	5	314	5	HIST1H4K	6	27799305	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	16905169	27799305	143315762	31	6949											
OR2H2	7932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29556102	29556102	+	Silent	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR2H2	NM_007160	exon1	c.C381A	p.P127P	CCAGCCCCTCCAC	.	122	40	180	0	.	22	A	29556102	C	A	29556102	2	1	48	1	0	0	0	0	0	0	0	1	11002	610	22	3		3	OR2H2	6	29556102	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	1756797	29556102	141558965	32	6950											
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41738386	41738386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FRS3	NM_006653	exon7	c.C1450G	p.R484G	TGTGCCGGGTTTT	.	82	29	151	0	.	92	C	41738386	G	C	41738386	3	2	48	1	0	0	0	0	1	0	0	0	6062	1115	39	4	32	4	FRS3	6	41738386	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	12182284	41738386	129376681	33	6951											
DLK2	65989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43418506	43418506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DLK2	NM_023932	exon6	c.T923C	p.V308A	AGGGCCACCAAGC	.	114	31	135	1	.	68	G	43418506	A	G	43418506	3	3	48	1	0	0	0	0	1	0	0	0	4565	159	6	2	232	2	DLK2	6	43418506	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	1680120	43418506	127696561	34	6952											
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46672428	46672428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLA2G7	NM_005084	exon12	c.C1195G	p.H399D	CTTTATGAAGTCC	.	275	143	385	0	.	90	C	46672428	G	C	46672428	3	2	48	1	0	0	0	0	1	0	0	0	12009	1290	45	4	134	4	PLA2G7	6	46672428	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	3253922	46672428	124442639	35	6953											
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49753721	49753721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PGK2	NM_138733	exon1	c.A1180T	p.T394S	CTCCAGTGCTGAC	.	109	54	153	0	.	91	A	49753721	T	A	49753721	3	1	48	1	0	0	0	0	1	0	0	0	11791	1696	59	4	77	4	PGK2	6	49753721	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	3081293	49753721	121361346	36	6954											
FAM162B	221303	broad.mit.edu;bcgsc.ca	37	6	117083206	117083206	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FAM162B	NM_001085480	exon3	c.A324G	p.K108K	ACAAGCTTTCACT	.	129	6	355	0	.	22	C	117083206	T	C	117083206	2	2	48	1	0	0	0	0	0	0	0	1	5475	1606	56	2		2	FAM162B	6	117083206	Silent	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	67329485	117083206	54031861	37	6955											
CREB5	9586	ucsc.edu;bcgsc.ca	37	7	28547332	28547332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CREB5	NM_182898	exon4	c.C268A	p.Q90K	AAGGCTCAGGAAG	.	72	10	112	1	.	92	A	28547332	C	A	28547332	3	1	48	1	0	0	0	0	1	0	0	0	3860	827	29	3	282	3	CREB5	7	28547332	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10		28547332	130591331	38	6956											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48311639	48311639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCA13	NM_152701	exon17	c.A2376G	p.K792K	TCAGAAACTCTTG	.	81	11	159	0	.	521	G	48311639	A	G	48311639	2	3	48	1	0	0	0	0	0	0	0	1	31	40	2	2		2	ABCA13	7	48311639	Silent	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	19764307	48311639	110827024	39	6957											
TRPV5	56302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142612521	142612521	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRPV5	NM_019841	exon10	c.C1242T	p.R414R	AAAATAGCGAGAG	.	111	39	189	2	.	177	A	142612521	G	A	142612521	2	1	48	1	0	0	0	0	0	0	0	1	16596	958	34	3		3	TRPV5	7	142612521	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	94300882	142612521	16526142	40	6958											
TAS2R39	259285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142881187	142881187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAS2R39	NM_176881	exon1	c.C676A	p.L226M	TTCATCCTGACAG	.	181	12	260	0	.	1	A	142881187	C	A	142881187	3	1	48	1	0	0	0	0	1	0	0	0	15573	680	24	3	678	3	TAS2R39	7	142881187	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	268666	142881187	16257476	41	6959											
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82606130	82606130	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC10A5	NM_001010893	exon1	c.C1078T	p.L360L	GAGGCAGCGTACA	.	47	13	130	0	.	90	A	82606130	G	A	82606130	2	1	48	1	0	0	0	0	0	0	0	1	14377	962	34	3		3	SLC10A5	8	82606130	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		82606130	63757892	42	6960											
YWHAZ	7534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	101960838	101960838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	YWHAZ	NM_145690	exon2	c.T280A	p.C94S	CATTGCAGATATC	.	158	12	286	0	.	658	T	101960838	A	T	101960838	3	4	48	1	0	0	0	0	1	0	0	0	17503	188	7	4	477	4	YWHAZ	8	101960838	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	19354708	101960838	44403184	43	6961											
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27949442	27949442	+	Missense_Mutation	SNP	G	G	T	rs199551773	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LINGO2	NM_001258282	exon7	c.C1228A	p.P410T	TTTTGGGTTTTTT	.	108	16	192	0	G|0.999;A|0.001	516	T	27949442	G	T	27949442	3	4	48	1	0	0	0	0	1	0	0	0	8815	1261	44	3	596	3	LINGO2	9	27949442	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		27949442	113263989	44	6962											
DAPK1	1612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90272970	90272970	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DAPK1	NM_004938	exon18	c.G1851A	p.A617A	CCTTGCGGCCAAC	.	16	5	64	0	.	359	A	90272970	G	A	90272970	2	1	48	1	0	0	0	0	0	0	0	1	4235	1103	39	1		1	DAPK1	9	90272970	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	62323528	90272970	50940461	45	6963											
SARDH	1757	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136582451	136582451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SARDH	NM_007101	exon8	c.C1147A	p.P383T	CACCAGGGCCGCA	.	33	12	56	0	.	90	T	136582451	G	T	136582451	3	4	48	1	0	0	0	0	1	0	0	0	13841	1232	43	3	1665	3	SARDH	9	136582451	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	46309481	136582451	4630980	46	6964											
DNAJC1	64215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22048461	22048461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DNAJC1	NM_022365	exon11	c.A1234T	p.T412S	GCTGGGTGATCAT	.	168	53	312	0	.	226	A	22048461	T	A	22048461	3	1	48	1	0	0	0	0	1	0	0	0	4628	1696	59	4	438	4	DNAJC1	10	22048461	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10		22048461	113486286	47	6965											
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27352965	27352965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANKRD26	NM_014915	exon12	c.G1315T	p.G439W	CAGCCCCAGCTAA	.	122	45	211	0	.	138	A	27352965	C	A	27352965	3	1	48	1	0	0	0	0	1	0	0	0	654	594	21	3	3909	3	ANKRD26	10	27352965	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	5304504	27352965	108181782	48	6966											
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70652470	70652470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STOX1	NM_152709	exon4	c.T2948C	p.L983P	TACCGCTAACTCC	.	180	77	303	0	.	92	C	70652470	T	C	70652470	3	2	48	1	0	0	0	0	1	0	0	0	15318	1522	53	2	2962	2	STOX1	10	70652470	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	43299505	70652470	64882277	49	6967											
MKI67	4288	ucsc.edu;bcgsc.ca	37	10	129913987	129913987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MKI67	NM_002417	exon7	c.A685G	p.N229D	TGCTATTGTCAAG	.	40	4	77	0	.	519	C	129913987	T	C	129913987	3	2	48	1	0	0	0	0	1	0	0	0	9598	1812	63	2	9121	2	MKI67	10	129913987	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	59261517	129913987	5620760	50	6968											
OR51E2	81285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4703712	4703712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR51E2	NM_030774	exon2	c.T230A	p.M77K	TTAGGCATGGTGG	.	34	15	94	0	.	502	T	4703712	A	T	4703712	3	4	48	1	0	0	0	0	1	0	0	0	11095	217	8	4	736	4	OR51E2	11	4703712	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10		4703712	130302804	51	6969											
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4968139	4968139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR51A4	NM_001005329	exon1	c.192delT	p.F64fs	GGAAAGAAAATAG	.	599	135	1236	0	.	71	-	4968139	A	-	4968139	7	5	48	1	0	1	0	1	0	0	0	0	11087	243	9	0	751	0	OR51A4	11	4968139	Frame_Shift_Del	DEL	A	TCGA-DD-A115-01A-11D-A12Z-10	264427	4968139	130038377	52	6970											
PACS1	55690	broad.mit.edu;bcgsc.ca	37	11	65988182	65988182	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PACS1	NM_018026	exon9	c.G1119A	p.L373L	CAGTCTGGAGATG	.	137	6	171	0	.	74	A	65988182	G	A	65988182	2	1	48	1	0	0	0	0	0	0	0	1	11372	1335	47	3		3	PACS1	11	65988182	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	61020043	65988182	69018334	53	6971											
DPP3	10072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66249912	66249912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DPP3	NM_001256670	exon2	c.G241T	p.A81S	GCCCTGGCTGAAG	.	44	9	36	0	.	46	T	66249912	G	T	66249912	3	4	48	1	0	0	0	0	1	0	0	0	4728	1203	42	3	243	3	DPP3	11	66249912	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	261730	66249912	68756604	54	6972											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76858899	76858899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYO7A	NM_001127179	exon4	c.C188G	p.S63W	CCACGTCGGTCCA	.	54	24	69	0	.	138	G	76858899	C	G	76858899	3	3	48	1	0	0	0	0	1	0	0	0	10082	893	31	4	198	4	MYO7A	11	76858899	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	10608987	76858899	58147617	55	6973											
FAT3	120114	broad.mit.edu;bcgsc.ca	37	11	92534438	92534438	+	Silent	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FAT3	NM_001008781	exon9	c.G8259C	p.G2753G	CAAAGGGGGCATA	.	98	6	107	0	.	73	C	92534438	G	C	92534438	2	2	48	1	0	0	0	0	0	0	0	1	5691	1219	43	4		4	FAT3	11	92534438	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	15675539	92534438	42472078	56	6974											
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	108172499	108172499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATM	NM_000051	exon35	c.A5302G	p.R1768G	CCTTTTAGAACAT	.	113	15	180	0	.	3419	G	108172499	A	G	108172499	3	3	48	1	0	0	0	0	1	0	0	0	1109	412	15	2	5436	2	ATM	11	108172499	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	15638061	108172499	26834017	57	6975											
SLC2A3	6515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8086448	8086448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC2A3	NM_006931	exon2	c.C66A	p.F22L	AAATTGGAAAGAG	.	143	47	211	0	.	94	T	8086448	G	T	8086448	3	4	48	1	0	0	0	0	1	0	0	0	14545	1165	41	3	1460	3	SLC2A3	12	8086448	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		8086448	125765447	58	6976											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757477	54757477	+	Silent	SNP	G	G	A	rs143236488		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GPR84	NM_020370	exon2	c.C159T	p.T53T	GAATCGGGTACGG	.	137	53	158	0	G|0.999;A|0.000	523	A	54757477	G	A	54757477	2	1	48	1	0	0	0	0	0	0	0	1	6714	1219	43	3		3	GPR84	12	54757477	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	46671029	54757477	79094418	59	6977											
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56708752	56708752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CNPY2	NM_014255	exon4	c.89-2A>G	.	GCATGCTGGTGGA	.	82	32	129	0	.	68	C	56708752	T	C	56708752	5	2	48	1	0	0	0	0	0	0	1	0	3628	1594	55	2	477	2	CNPY2	12	56708752	Splice_Site	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	1951275	56708752	77143143	60	6978											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70960239	70960239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PTPRB	NM_001109754	exon15	c.G3880C	p.E1294Q	GGGCTTCCTTGCT	.	349	142	543	0	.	226	G	70960239	C	G	70960239	3	3	48	1	0	0	0	0	1	0	0	0	12796	864	30	4	2847	4	PTPRB	12	70960239	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	14251487	70960239	62891656	61	6979											
TRPV4	59341	ucsc.edu;bcgsc.ca	37	12	110234363	110234363	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRPV4	NM_021625	exon7	c.G1299A	p.V433V	CTCCAGCACGGAG	.	41	4	56	0	.	94	T	110234363	C	T	110234363	2	4	48	1	0	0	0	0	0	0	0	1	16595	697	25	3		3	TRPV4	12	110234363	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	39274124	110234363	23617532	62	6980											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120602144	120602144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GCN1L1	NM_006836	exon18	c.A1844G	p.H615R	ACCTTGTGAGAAC	.	85	32	96	0	.	94	C	120602144	T	C	120602144	3	2	48	1	0	0	0	0	1	0	0	0	6299	1696	59	2	6335	2	GCN1L1	12	120602144	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	10367781	120602144	13249751	63	6981											
RNF10	9921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	121013648	121013648	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RNF10	NM_014868	exon16	c.A2254T	p.N752Y	AGTGATAATTCAG	.	115	13	187	0	.	227	T	121013648	A	T	121013648	3	4	48	1	0	0	0	0	1	0	0	0	13422	362	13	4	2316	4	RNF10	12	121013648	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	411504	121013648	12838247	64	6982											
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122623457	122623457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MLXIP	NM_014938	exon15	c.G2480A	p.R827Q	AAACCCGGACCTT	.	210	12	389	0	.	92	A	122623457	G	A	122623457	3	1	48	1	0	0	0	0	1	0	0	0	9636	1116	39	1	2538	1	MLXIP	12	122623457	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	1609809	122623457	11228438	65	6983											
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001082488	exon8	c.T653C	p.I218T	GACTTATCAAGAC	.	502	180	818	2	.	.	C	24517998	T	C	24517998	3	2	48	1	0	0	0	0	1	0	0	0	4493	1435	50	2	683	2	DHRS4L1	14	24517998	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10		24517998	82831542	66	6984											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102466376	102466376	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DYNC1H1	NM_001376	exon17	c.G3855A	p.G1285G	TGAGGGGAAGTTT	.	65	25	116	0	.	98	A	102466376	G	A	102466376	2	1	48	1	0	0	0	0	0	0	0	1	4841	1161	41	3		3	DYNC1H1	14	102466376	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	77948378	102466376	4883164	67	6985											
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416248	105416248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AHNAK2	NM_138420	exon7	c.A5540G	p.D1847G	GACACATCCACCG	.	194	44	335	0	.	47	C	105416248	T	C	105416248	3	2	48	1	0	0	0	0	1	0	0	0	415	1435	50	2	11851	2	AHNAK2	14	105416248	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	2949872	105416248	1933292	68	6986											
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40268641	40268641	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF2AK4	NM_001013703	exon12	c.C1845T	p.C615C	CTGCTGCTACGCA	.	62	34	87	0	.	757	T	40268641	C	T	40268641	2	4	48	1	0	0	0	0	0	0	0	1	4999	805	28	3		3	EIF2AK4	15	40268641	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10		40268641	62262751	69	6987											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63991120	63991120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HERC1	NM_003922	exon26	c.A4712G	p.N1571S	GAGGAGTTGCATA	.	93	17	158	0	.	666	C	63991120	T	C	63991120	3	2	48	1	0	0	0	0	1	0	0	0	7057	1725	60	2	10085	2	HERC1	15	63991120	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	23722479	63991120	38540272	70	6988											
NEO1	4756	ucsc.edu;bcgsc.ca	37	15	73541532	73541532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NEO1	NM_001172623	exon10	c.G1738T	p.G580W	GAAAAGGGGACTG	.	44	4	88	0	.	116	T	73541532	G	T	73541532	3	4	48	1	0	0	0	0	1	0	0	0	10336	1232	43	3	1776	3	NEO1	15	73541532	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	9550412	73541532	28989860	71	6989											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77134131	77134131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SCAPER	NM_020843	exon4	c.G337A	p.A113T	CTACTGCTCGGCG	.	151	87	271	0	.	137	T	77134131	C	T	77134131	3	4	48	1	0	0	0	0	1	0	0	0	13878	797	28	3	4015	3	SCAPER	15	77134131	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	3592599	77134131	25397261	72	6990											
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86236558	86236558	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AKAP13	NM_006738	exon17	c.A5352G	p.K1784K	TTCTAAAGACAAG	.	47	4	108	0	.	258	G	86236558	A	G	86236558	2	3	48	1	0	0	0	0	0	0	0	1	449	69	3	2		2	AKAP13	15	86236558	Silent	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	9102427	86236558	16294834	73	6991											
EMP2	2013	ucsc.edu;bcgsc.ca	37	16	10626944	10626944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EMP2	NM_001424	exon5	c.T322C	p.C108R	TGACACACAGACC	.	39	4	34	0	.	90	G	10626944	A	G	10626944	3	3	48	1	0	0	0	0	1	0	0	0	5102	159	6	2	185	2	EMP2	16	10626944	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10		10626944	79727809	74	6992											
ABCC6	368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16244451	16244451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCC6	NM_001171	exon30	c.G4387T	p.V1463L	CCATCACGGAGCG	.	57	24	89	0	.	93	A	16244451	C	A	16244451	3	1	48	1	0	0	0	0	1	0	0	0	57	536	19	1	132	1	ABCC6	16	16244451	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	5617507	16244451	74110302	75	6993											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27517278	27517278	+	Missense_Mutation	SNP	G	G	T	rs140459536	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GTF3C1	NM_001520	exon10	c.C1712A	p.A571E	CTGTCCGCACAGT	.	105	41	148	0	G|1.000;A|0.000	94	T	27517278	G	T	27517278	3	4	48	1	0	0	0	0	1	0	0	0	6872	1087	38	1	4729	1	GTF3C1	16	27517278	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	11272827	27517278	62837475	76	6994											
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70891690	70891690	+	Silent	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HYDIN	NM_001270974	exon72	c.C12213A	p.V4071V	GAAAGGGACTGTG	.	127	40	289	0	.	92	T	70891690	G	T	70891690	2	4	48	1	0	0	0	0	0	0	0	1	7467	1161	41	3		3	HYDIN	16	70891690	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	43374412	70891690	19463063	77	6995											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71823203	71823204	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	p.G83V	AGGGTAGCCCAGC	.	111	52	169	0	.	.	AA	71823204	GC	AA	71823203	3	1	48	1	0	0	0	0	1	0	0	0	732	958	34	3	2389	3	AP1G1	16	71823203	Missense_Mutation	DNP	GC	TCGA-DD-A115-01A-11D-A12Z-10	931513	71823203	18531550	78	6996											
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89813300	89813300	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FANCA	NM_000135	exon35	c.3349-2A>G	.	TTTCTCTGCAAAA	.	45	4	38	0	.	1130	C	89813300	T	C	89813300	5	2	48	1	0	0	0	0	0	0	1	0	5662	1594	55	2	1060	2	FANCA	16	89813300	Splice_Site	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	17990097	89813300	541453	79	6997											
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15642100	15642100	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TBC1D26	NM_178571	exon8	c.C453T	p.H151H	CAGCCACACCCTG	.	222	94	585	1	.	90	T	15642100	C	T	15642100	2	4	48	1	0	0	0	0	0	0	0	1	15613	477	17	3		3	TBC1D26	17	15642100	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10		15642100	65553110	80	6998											
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56355395	56355395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MPO	NM_000250	exon7	c.C997T	p.L333F	AAGTGAGCGCGTT	.	54	23	61	0	.	156	A	56355395	G	A	56355395	3	1	48	1	0	0	0	0	1	0	0	0	9732	971	34	3	1264	3	MPO	17	56355395	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	40713295	56355395	24839815	81	6999											
RPS6KB1	6198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58013587	58013587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RPS6KB1	NM_001272043	exon11	c.A990T	p.R330S	GAAAAGAAATGCT	.	257	155	302	1	.	1041	T	58013587	A	T	58013587	3	4	48	1	0	0	0	0	1	0	0	0	13656	243	9	4	1032	4	RPS6KB1	17	58013587	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	1658192	58013587	23181623	82	7000											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60743465	60743465	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MRC2	NM_006039	exon3	c.C531T	p.T177T	CTACACCATCCAG	.	50	33	76	0	.	117	T	60743465	C	T	60743465	2	4	48	1	0	0	0	0	0	0	0	1	9758	581	21	3		3	MRC2	17	60743465	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	2729878	60743465	20451745	83	7001											
MAP2K6	5608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67521065	67521065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MAP2K6	NM_002758	exon9	c.C687T	p.L229L	AGAGCTCAACCAG	.	150	86	150	0	.	1404	T	67521065	C	T	67521065	2	4	48	1	0	0	0	0	0	0	0	1	9241	813	29	3		3	MAP2K6	17	67521065	Silent	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	6777600	67521065	13674145	84	7002											
GAA	2548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78091993	78091993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GAA	NM_001079803	exon19	c.G2483T	p.G828V	TCCAGGGCCCTGG	.	70	27	72	0	.	91	T	78091993	G	T	78091993	3	4	48	1	0	0	0	0	1	0	0	0	6147	1217	42	3	2549	3	GAA	17	78091993	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	10570928	78091993	3103217	85	7003											
BAHCC1	57597	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79409035	79409035	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BAHCC1	.	.	.	.	CCTCGTGGGCAAA	.	46	7	57	0	.	23	A	79409035	G	A	79409035	2	1	48	1	0	0	0	0	0	0	0	1	1296	1335	47	3		3	BAHCC1	17	79409035	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	1317042	79409035	1786175	86	7004											
RAB40B	10966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80615904	80615904	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RAB40B	NM_006822	exon6	c.672delC	p.S224fs	CGAGAAGGACTTG	.	164	23	191	0	.	227	-	80615904	G	-	80615904	7	5	48	1	0	1	0	1	0	0	0	0	12941	987	35	0	168	0	RAB40B	17	80615904	Frame_Shift_Del	DEL	G	TCGA-DD-A115-01A-11D-A12Z-10	1206869	80615904	579306	87	7005											
ZNF236	7776	ucsc.edu;bcgsc.ca	37	18	74637445	74637445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF236	NM_007345	exon22	c.A3956G	p.Q1319R	CAGGACAGTTTGA	.	50	5	85	0	.	94	G	74637445	A	G	74637445	3	3	48	1	0	0	0	0	1	0	0	0	17786	188	7	2	4042	2	ZNF236	18	74637445	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10		74637445	3439803	88	7006											
FUT3	2525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5844841	5844841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FUT3	NM_001097640	exon3	c.C10T	p.L4L	CACCCAGGGGATC	.	102	13	173	0	.	90	A	5844841	G	A	5844841	2	1	48	1	0	0	0	0	0	0	0	1	6105	991	35	3		3	FUT3	19	5844841	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		5844841	53284142	89	7007											
ZNF560	147741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9580387	9580387	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF560	NM_152476	exon9	c.449-1G>A	.	GGTAACCTGTACA	.	78	9	167	1	.	158	T	9580387	C	T	9580387	5	4	48	1	0	0	0	0	0	0	1	0	17988	695	24	3	1936	3	ZNF560	19	9580387	Splice_Site	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	3735546	9580387	49548596	90	7008											
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17038989	17038989	+	Missense_Mutation	SNP	G	G	A	rs200032712		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CPAMD8	NM_015692	exon25	c.C3341T	p.P1114L	GGCCTCGGGAGGG	.	59	23	46	0	G|0.999;A|0.001	141	A	17038989	G	A	17038989	3	1	48	1	0	0	0	0	1	0	0	0	3795	1116	39	1	2529	1	CPAMD8	19	17038989	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	7458602	17038989	42089994	91	7009											
MRPS12	6183	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39421984	39421984	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MRPS12	NM_033362	exon2	c.49+1G>A	.	CTTGTGGTAAGTG	.	67	6	127	0	.	90	A	39421984	G	A	39421984	5	1	48	1	0	0	0	0	0	0	1	0	9823	1275	44	3	52	3	MRPS12	19	39421984	Splice_Site	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	22382995	39421984	19706999	92	7010											
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52001391	52001391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SIGLEC12	NM_053003	exon5	c.G1286T	p.G429V	AGCACCCCAAGGT	.	66	17	86	0	.	96	A	52001391	C	A	52001391	3	1	48	1	0	0	0	0	1	0	0	0	14308	623	22	3	517	3	SIGLEC12	19	52001391	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	12579407	52001391	7127592	93	7011											
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52538685	52538685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF432	NM_014650	exon5	c.G247A	p.E83K	CAACTTCGTTGTT	.	163	61	246	0	.	154	T	52538685	C	T	52538685	3	4	48	1	0	0	0	0	1	0	0	0	17903	893	31	1	1715	1	ZNF432	19	52538685	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	537294	52538685	6590298	94	7012											
FCAR	2204	broad.mit.edu;bcgsc.ca	37	19	55386823	55386823	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FCAR	NM_002000	exon2	c.70+2T>C	.	GGAAGGTAAGTGT	.	112	54	170	1	.	92	C	55386823	T	C	55386823	5	2	48	1	0	0	0	0	0	0	1	0	5773	1652	57	2	78	2	FCAR	19	55386823	Splice_Site	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	2848138	55386823	3742160	95	7013											
SIRPD	128646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1532400	1532400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SIRPD	NM_178460	exon2	c.T358C	p.F120L	TTATGAACTTCAC	.	79	24	137	0	.	227	G	1532400	A	G	1532400	3	3	48	1	0	0	0	0	1	0	0	0	14335	43	2	2	247	2	SIRPD	20	1532400	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10		1532400	61493120	96	7014											
C20orf196	149840	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	5844104	5844104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	C20orf196	NM_152504	exon3	c.C613G	p.L205V	AAAGACCTGTAAC	.	64	7	115	0	.	90	G	5844104	C	G	5844104	3	3	48	1	0	0	0	0	1	0	0	0	2101	680	24	4	619	4	C20orf196	20	5844104	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	4311704	5844104	57181416	97	7015											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9401994	9401994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLCB4	NM_001172646	exon26	c.G2205T	p.E735D	CGTAGAGGTGGAT	.	116	48	168	0	.	274	T	9401994	G	T	9401994	3	4	48	1	0	0	0	0	1	0	0	0	12030	991	35	3	2299	3	PLCB4	20	9401994	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	3557890	9401994	53623526	98	7016											
NINL	22981	ucsc.edu;bcgsc.ca	37	20	25485596	25485596	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NINL	NM_025176	exon6	c.C636T	p.S212S	TCCGCTGCTGCCC	.	46	4	96	0	.	94	A	25485596	G	A	25485596	2	1	48	1	0	0	0	0	0	0	0	1	10420	1310	46	3		3	NINL	20	25485596	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	16083602	25485596	37539924	99	7017											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50346419	50346419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATP9A	NM_006045	exon2	c.A167T	p.N56I	ATGACATTCCGAG	.	74	23	140	0	.	94	A	50346419	T	A	50346419	3	1	48	1	0	0	0	0	1	0	0	0	1198	1493	52	4	3084	4	ATP9A	20	50346419	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10	24860823	50346419	12679101	100	7018											
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39086700	39086700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KCNJ6	NM_002240	exon3	c.C760T	p.P254S	TCAACGGGATGAA	.	179	33	321	0	.	91	A	39086700	G	A	39086700	3	1	48	1	0	0	0	0	1	0	0	0	8055	1232	43	3	519	3	KCNJ6	21	39086700	Missense_Mutation	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10		39086700	9043195	101	7019											
IGLL5	100423062	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	23237760	23237760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001178126	exon3	c.C531A	p.S177R	GGCCAGCAGCTAC	.	208	77	313	2	.	.	A	23237760	C	A	23237760	3	1	48	1	0	0	0	0	1	0	0	0	7594	709	25	3	541	3	IGLL5	22	23237760	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10		23237760	28066806	102	7020											
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	29694814	29694814	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EWSR1	NM_013986	exon15	c.G1524A	p.R508R	ACCCCGGGGTTCC	.	61	23	73	0	.	3375	A	29694814	G	A	29694814	2	1	48	1	0	0	0	0	0	0	0	1	5296	1219	43	3		3	EWSR1	22	29694814	Silent	SNP	G	TCGA-DD-A115-01A-11D-A12Z-10	6457054	29694814	21609752	103	7021											
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	31525446	31525446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DMD	NM_004006	exon56	c.A8342G	p.N2781S	TTCATGTTATCCA	.	168	7	287	1	.	265	C	31525446	T	C	31525446	3	2	48	1	0	0	0	0	1	0	0	0	4580	1725	60	2	2925	2	DMD	23	31525446	Missense_Mutation	SNP	T	TCGA-DD-A115-01A-11D-A12Z-10		31525446	123745114	104	7022											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70680629	70680629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAF1	NM_004606	exon37	c.A5435G	p.H1812R	CTTCCCATGGTTT	.	90	67	146	0	.	900	G	70680629	A	G	70680629	3	3	48	1	0	0	0	0	1	0	0	0	15510	217	8	2	5581	2	TAF1	23	70680629	Missense_Mutation	SNP	A	TCGA-DD-A115-01A-11D-A12Z-10	39155183	70680629	84589931	105	7023											
NRK	203447	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105152837	105152837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NRK	NM_198465	exon13	c.C1204A	p.Q402K	GAGCCACAGGTCC	.	72	8	127	2	.	630	A	105152837	C	A	105152837	3	1	48	1	0	0	0	0	1	0	0	0	10655	479	17	3	1254	3	NRK	23	105152837	Missense_Mutation	SNP	C	TCGA-DD-A115-01A-11D-A12Z-10	34472208	105152837	50117723	106	7024											
ZNF644	84146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	91405648	91405648	+	Silent	SNP	C	C	T	rs78456645	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF644	NM_201269	exon3	c.G1263A	p.E421E	CTTCTTCTCCCTA	.	170	76	90	0	C|0.997;T|0.003	155	T	91405648	C	T	91405648	2	4	49	1	0	0	0	0	0	0	0	1	18057	912	32	3		3	ZNF644	1	91405648	Silent	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10		91405648	157844973	1	7025											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109795619	109795619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CELSR2	NM_001408	exon1	c.T2918C	p.I973T	TGGACATCTTCTC	.	95	42	37	0	.	526	C	109795619	T	C	109795619	3	2	49	1	0	0	0	0	1	0	0	0	3222	1435	50	2	2920	2	CELSR2	1	109795619	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	18389971	109795619	139455002	2	7026											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151260007	151260007	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF687	NM_020832	exon2	c.C1240T	p.L414L	GCCATGCTGATGG	.	71	26	19	0	.	92	T	151260007	C	T	151260007	2	4	49	1	0	0	0	0	0	0	0	1	18089	796	28	3		3	ZNF687	1	151260007	Silent	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	41464388	151260007	97990614	3	7027											
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151499552	151499552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CGN	NM_020770	exon10	c.G1865T	p.G622V	GTGCTGGAGATAC	.	228	79	83	0	.	93	T	151499552	G	T	151499552	3	4	49	1	0	0	0	0	1	0	0	0	3303	1174	41	3	1899	3	CGN	1	151499552	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	239545	151499552	97751069	4	7028											
DCST2	127579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155003099	155003099	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DCST2	NM_144622	exon6	c.G828T	p.R276R	ACGCACCCGGTTG	.	253	94	67	0	.	92	A	155003099	C	A	155003099	2	1	49	1	0	0	0	0	0	0	0	1	4303	610	22	3		3	DCST2	1	155003099	Silent	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	3503547	155003099	94247522	5	7029											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156220788	156220788	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMG5	NM_015327	exon22	c.2829-1G>T	.	AGAGTCCTGGGGA	.	58	31	22	0	.	231	A	156220788	C	A	156220788	5	1	49	1	0	0	0	0	0	0	1	0	14796	695	24	3	230	3	SMG5	1	156220788	Splice_Site	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	1217689	156220788	93029833	6	7030											
FMO1	2326	broad.mit.edu;mdanderson.org	37	1	171251160	171251160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FMO1	NM_002021	exon7	c.C871T	p.R291C	CCAGGACGCATCA	.	37	7	39	0	.	515	T	171251160	C	T	171251160	3	4	49	1	0	0	0	0	1	0	0	0	5954	536	19	1	893	1	FMO1	1	171251160	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	15030372	171251160	77999461	7	7031											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181548355	181548355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1E	NM_001205293	exon5	c.A764T	p.N255I	TGAACAATTCAGG	.	545	189	113	0	.	95	T	181548355	A	T	181548355	3	4	49	1	0	0	0	0	1	0	0	0	2542	101	4	4	782	4	CACNA1E	1	181548355	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	10297195	181548355	67702266	8	7032											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207110487	207110487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PIGR	NM_002644	exon4	c.T998C	p.L333P	TCCTGCAGCTGAC	.	112	30	53	0	.	92	G	207110487	A	G	207110487	3	3	49	1	0	0	0	0	1	0	0	0	11897	188	7	2	1328	2	PIGR	1	207110487	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	25562132	207110487	42140134	9	7033											
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212184718	212184718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	INTS7	NM_015434	exon5	c.A555G	p.Q185Q	CATACCTTGAATC	.	559	39	153	0	.	90	C	212184718	T	C	212184718	2	2	49	1	0	0	0	0	0	0	0	1	7783	1623	56	2		2	INTS7	1	212184718	Silent	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	5074231	212184718	37065903	10	7034											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220356254	220356254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAB3GAP2	NM_012414	exon20	c.G2018C	p.R673T	TCAAGCCTTAGTA	.	373	116	103	0	.	90	G	220356254	C	G	220356254	3	3	49	1	0	0	0	0	1	0	0	0	12936	681	24	4	2227	4	RAB3GAP2	1	220356254	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	8171536	220356254	28894367	11	7035											
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.V137L	CTTCTACGTGACA	.	817	157	151	0	.	.	TC	248525291	CG	TC	248525290	3	4	49	1	0	0	0	0	1	0	0	0	11027	547	19	1	410	1	OR2T4	1	248525290	Missense_Mutation	DNP	CG	TCGA-DD-A116-01A-11D-A12Z-10	28169036	248525290	725331	12	7036											
ALMS1	7840	broad.mit.edu;bcgsc.ca	37	2	73716774	73716774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALMS1	NM_015120	exon10	c.C7685T	p.P2562L	AGAGTCCACGGGG	.	145	7	53	0	.	142	T	73716774	C	T	73716774	3	4	49	1	0	0	0	0	1	0	0	0	535	594	21	3	7723	3	ALMS1	2	73716774	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10		73716774	169482599	13	7037											
BIN1	274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	127821169	127821169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BIN1	NM_139345	exon9	c.752delA	p.N251fs	TGGAAGTTTTCCT	.	152	52	54	0	.	655	-	127821169	T	-	127821169	7	5	49	1	0	1	0	1	0	0	0	0	1432	1725	60	0	1122	0	BIN1	2	127821169	Frame_Shift_Del	DEL	T	TCGA-DD-A116-01A-11D-A12Z-10	54104395	127821169	115378204	14	7038											
ACVR1	90	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158637001	158637001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACVR1	NM_001105	exon4	c.A179G	p.N60S	CCATCGTTGATGC	.	163	61	43	0	.	980	C	158637001	T	C	158637001	3	2	49	1	0	0	0	0	1	0	0	0	220	1725	60	2	1382	2	ACVR1	2	158637001	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	30815832	158637001	84562372	15	7039											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197084796	197084796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HECW2	NM_020760	exon26	c.A4375G	p.S1459G	AATCACTTAGGTC	.	120	38	56	0	.	668	C	197084796	T	C	197084796	3	2	49	1	0	0	0	0	1	0	0	0	7043	1609	56	2	359	2	HECW2	2	197084796	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	38447795	197084796	46114577	16	7040											
ZFYVE20	64145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15115343	15115343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFYVE20	NM_022340	exon14	c.G2301T	p.E767D	CAGATTCTCTGTC	.	143	56	50	0	.	92	A	15115343	C	A	15115343	3	1	49	1	0	0	0	0	1	0	0	0	17663	912	32	3	57	3	ZFYVE20	3	15115343	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10		15115343	182907087	17	7041											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	223	71	91	1	.	24361	C	41266100	T	C	41266100	3	2	49	1	0	0	0	0	1	0	0	0	4016	1551	54	2	103	2	CTNNB1	3	41266100	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	26150757	41266100	156756330	18	7042											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52588770	52588770	+	Missense_Mutation	SNP	C	C	A	rs143564112	byfrequency;alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PBRM1	NM_018313	exon27	c.G4258T	p.V1420L	CAGGCACACCTGG	.	229	83	69	0	C|0.999;T|0.001	575	A	52588770	C	A	52588770	3	1	49	1	0	0	0	0	1	0	0	0	11491	478	17	3	506	3	PBRM1	3	52588770	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	11322670	52588770	145433660	19	7043											
DTX3L	151636	broad.mit.edu;bcgsc.ca	37	3	122287562	122287562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	DTX3L,NS,carcinoma,-1	DTX3L	NM_138287	exon3	c.A626G	p.K209R	AGAGGAAGCCACT	.	128	7	53	0	.	587	G	122287562	A	G	122287562	3	3	49	1	0	0	0	0	1	0	0	0	4796	72	3	2	636	2	DTX3L	3	122287562	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	69698792	122287562	75734868	20	7044											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130286897	130286897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL6A6	NM_001102608	exon5	c.A1850G	p.K617R	CTTGCAAAGAGAT	.	121	45	50	0	.	76	G	130286897	A	G	130286897	3	3	49	1	0	0	0	0	1	0	0	0	3703	14	1	2	1868	2	COL6A6	3	130286897	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	7999335	130286897	67735533	21	7045											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184049265	184049265	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EIF4G1	NM_001194946	exon31	c.G4287A	p.V1429V	GAAGGTGGAGTAT	.	68	28	28	0	.	344	A	184049265	G	A	184049265	2	1	49	1	0	0	0	0	0	0	0	1	5036	1335	47	3		3	EIF4G1	3	184049265	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	53762368	184049265	13973165	22	7046											
ZDHHC19	131540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195935366	195935366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZDHHC19	NM_001039617	exon4	c.G474A	p.M158I	AAGCAGCATGAAG	.	269	91	81	0	.	93	T	195935366	C	T	195935366	3	4	49	1	0	0	0	0	1	0	0	0	17606	710	25	3	471	3	ZDHHC19	3	195935366	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	11886101	195935366	2087064	23	7047											
BDH1	622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	197238766	197238766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BDH1	NM_004051	exon7	c.A1032C	p.X344C	GACTCTTCAGCGG	.	153	51	60	0	.	91	G	197238766	T	G	197238766	3	3	49	1	0	0	0	0	1	0	0	0	1390	1796	62	5	3	5	BDH1	3	197238766	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	1303400	197238766	783664	24	7048											
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36216083	36216083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP2	NM_015230	exon3	c.A925T	p.N309Y	CAACATTTCTTCT	.	397	281	120	0	.	93	A	36216083	T	A	36216083	3	1	49	1	0	0	0	0	1	0	0	0	839	1841	64	4	4313	4	ARAP2	4	36216083	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10		36216083	154938193	25	7049											
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	118006517	118006517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRAM1L1	NM_152402	exon1	c.C33T	p.P11P	AACGGGGGGGTTC	.	63	45	40	0	.	90	A	118006517	G	A	118006517	2	1	49	1	0	0	0	0	0	0	0	1	16449	1219	43	3		3	TRAM1L1	4	118006517	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	81790434	118006517	73147759	26	7050											
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122250816	122250816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	QRFPR	NM_198179	exon6	c.G949A	p.V317M	TTTGCACGATAGC	.	108	64	63	0	.	90	T	122250816	C	T	122250816	3	4	49	1	0	0	0	0	1	0	0	0	12878	536	19	1	350	1	QRFPR	4	122250816	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	4244299	122250816	68903460	27	7051											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123301311	123301311	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAD1	NM_139243	exon3	c.G87A	p.A29A	ACCAGCGACAAAG	.	130	87	65	0	.	90	A	123301311	G	A	123301311	2	1	49	1	0	0	0	0	0	0	0	1	231	1045	37	1		1	ADAD1	4	123301311	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	1050495	123301311	67852965	28	7052											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	474998	474998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC9A3	NM_004174	exon16	c.T2501A	p.M834K	CGTTACATGTGTG	.	68	20	23	0	.	90	T	474998	A	T	474998	3	4	49	1	0	0	0	0	1	0	0	0	14713	231	8	4	11	4	SLC9A3	5	474998	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10		474998	180440262	29	7053											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13770967	13770967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAH5	NM_001369	exon56	c.A9496G	p.R3166G	GGAATCTCTGAAA	.	272	77	66	0	.	182	C	13770967	T	C	13770967	3	2	49	1	0	0	0	0	1	0	0	0	4604	1559	54	2	4474	2	DNAH5	5	13770967	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	13295969	13770967	167144293	30	7054											
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34005875	34005875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AMACR	NM_014324	exon2	c.A377G	p.Y126C	GCCAAATAGTTGA	.	61	16	27	0	.	90	C	34005875	T	C	34005875	3	2	49	1	0	0	0	0	1	0	0	0	562	1406	49	2	1117	2	AMACR	5	34005875	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	20234908	34005875	146909385	31	7055											
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60217888	60217888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ERCC8	NM_000082	exon3	c.A268G	p.I90V	TGCCAATGGAACA	.	59	24	36	0	.	227	C	60217888	T	C	60217888	3	2	49	1	0	0	0	0	1	0	0	0	5219	1464	51	2	962	2	ERCC8	5	60217888	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	26212013	60217888	120697372	32	7056											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	72144245	72144245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TNPO1	NM_002270	exon2	c.G49T	p.E17X	CCTGACGAGCAAG	.	99	21	43	0	.	228	T	72144245	G	T	72144245	4	4	49	1	0	0	0	0	0	1	0	0	16332	1059	37	1	55	1	TNPO1	5	72144245	Nonsense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	11926357	72144245	108771015	33	7057											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141033643	141033643	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP3	NM_022481	exon33	c.G4509T	p.L1503L	ACTTCCCAGGCCT	.	208	86	61	0	.	291	A	141033643	C	A	141033643	2	1	49	1	0	0	0	0	0	0	0	1	840	581	21	3		3	ARAP3	5	141033643	Silent	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	68889398	141033643	39881617	34	7058											
KIF4B	285643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154396242	154396242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIF4B	NM_001099293	exon1	c.C2823G	p.S941R	GGAAAGCCAAATG	.	484	86	103	1	.	1	G	154396242	C	G	154396242	3	3	49	1	0	0	0	0	1	0	0	0	8304	738	26	4	2825	4	KIF4B	5	154396242	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	13362599	154396242	26519018	35	7059											
C1QTNF2	114898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	159776748	159776748	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C1QTNF2	NM_031908	exon3	c.A420G	p.P140P	GCCCTTTGGTCCT	.	37	8	15	0	.	91	C	159776748	T	C	159776748	2	2	49	1	0	0	0	0	0	0	0	1	1963	1799	63	2		2	C1QTNF2	5	159776748	Silent	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	5380506	159776748	21138512	36	7060											
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167891765	167891765	+	Missense_Mutation	SNP	G	G	A	rs139653620		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	WWC1,NS,carcinoma,0	WWC1	NM_001161662	exon21	c.G2966A	p.R989H	CCGAGCGTCTGAT	.	194	53	39	0	G|1.000;A|0.000	157	A	167891765	G	A	167891765	3	1	49	1	0	0	0	0	1	0	0	0	17408	1145	40	1	3048	1	WWC1	5	167891765	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	8115017	167891765	13023495	37	7061											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169141427	169141427	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DOCK2	NM_004946	exon19	c.A1907T	p.K636M	TAGAAAAGTTGAA	.	385	103	100	0	.	97	T	169141427	A	T	169141427	3	4	49	1	0	0	0	0	1	0	0	0	4687	72	3	4	1981	4	DOCK2	5	169141427	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	1249662	169141427	11773833	38	7062											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180047636	180047636	+	Silent	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FLT4	NM_182925	exon16	c.C2379G	p.L793L	GAGGAGGAGGAGG	.	172	64	47	0	.	1490	C	180047636	G	C	180047636	2	2	49	1	0	0	0	0	0	0	0	1	5944	1161	41	4		4	FLT4	5	180047636	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	10906209	180047636	867624	39	7063											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7585392	7585392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSP	NM_004415	exon24	c.A7897G	p.I2633V	ATCTCCATTACAG	.	88	28	34	0	.	518	G	7585392	A	G	7585392	3	3	49	1	0	0	0	0	1	0	0	0	4781	217	8	2	7991	2	DSP	6	7585392	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10		7585392	163529675	40	7064											
NEU1	4758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31830507	31830507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NEU1	NM_000434	exon1	c.G47T	p.G16V	CGCGGCCCCCAGC	.	105	32	33	0	.	91	A	31830507	C	A	31830507	3	1	49	1	0	0	0	0	1	0	0	0	10341	623	22	3	1224	3	NEU1	6	31830507	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	24245115	31830507	139284560	41	7065											
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46976681	46976681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR110	NM_153840	exon11	c.G2490C	p.Q830H	TCTCACCTGGAAT	.	171	60	81	0	.	71	G	46976681	C	G	46976681	3	3	49	1	0	0	0	0	1	0	0	0	6627	695	24	4	262	4	GPR110	6	46976681	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	15146174	46976681	124138386	42	7066											
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128113	88128113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C6orf165	NM_001031743	exon7	c.G819T	p.E273D	ATATGAGGTCTTC	.	173	71	71	0	.	90	T	88128113	G	T	88128113	3	4	49	1	0	0	0	0	1	0	0	0	2341	991	35	3	841	3	C6orf165	6	88128113	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	41151432	88128113	82986954	43	7067											
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	45002481	45002481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYO1G	NM_033054	exon22	c.C2914A	p.L972M	CCTCCAGGGTGCG	.	47	18	8	0	.	137	T	45002481	G	T	45002481	3	4	49	1	0	0	0	0	1	0	0	0	10074	991	35	3	146	3	MYO1G	7	45002481	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		45002481	114136182	44	7068											
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83037733	83037733	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEMA3E	NM_012431	exon6	c.G621A	p.G207G	CAGTCGCCCCATG	.	214	71	69	0	.	93	T	83037733	C	T	83037733	2	4	49	1	0	0	0	0	0	0	0	1	14028	726	26	3		3	SEMA3E	7	83037733	Silent	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	38035252	83037733	76100930	45	7069											
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854615	89854615	+	Silent	SNP	G	G	A	rs145786195	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STEAP2	NM_001244946	exon3	c.G219A	p.V73V	TCATGTGGTAGAT	.	160	51	93	0	G|1.000;T|0.000	92	A	89854615	G	A	89854615	2	1	49	1	0	0	0	0	0	0	0	1	15277	1335	47	3		3	STEAP2	7	89854615	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	6816882	89854615	69284048	46	7070											
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123517143	123517143	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HYAL4	NM_012269	exon5	c.T1380A	p.P460P	TTCCCCTTCTCCT	.	302	112	106	0	.	91	A	123517143	T	A	123517143	2	1	49	1	0	0	0	0	0	0	0	1	7466	1596	56	4		4	HYAL4	7	123517143	Silent	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	33662528	123517143	35621520	47	7071											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6296583	6296583	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MCPH1	NM_001172574	exon6	c.G546A	p.E182E	ACAAGAGATGAAG	.	95	28	36	0	.	229	A	6296583	G	A	6296583	2	1	49	1	0	0	0	0	0	0	0	1	9398	933	33	3		3	MCPH1	8	6296583	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		6296583	140067439	48	7072											
HGSNAT	138050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	43033222	43033222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HGSNAT	NM_152419	exon10	c.T857A	p.V286E	GGTTTGTATTTAT	.	197	110	114	0	.	68	A	43033222	T	A	43033222	3	1	49	1	0	0	0	0	1	0	0	0	7088	1638	57	4	895	4	HGSNAT	8	43033222	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	36736639	43033222	103330800	49	7073											
YTHDF3	253943	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	64098980	64098980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	ATGGGGGACAAGT	.	770	176	122	0	.	.	A	64098980	G	A	64098980	2	1	49	1	0	0	0	0	0	0	0	1	17497	1174	41	3		3	YTHDF3	8	64098980	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	21065758	64098980	82265042	50	7074											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68939468	68939468	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PREX2	NM_025170	exon5	c.G453T	p.L151L	CATGCTGCTTGGA	.	200	45	71	0	.	390	T	68939468	G	T	68939468	2	4	49	1	0	0	0	0	0	0	0	1	12477	1306	46	3		3	PREX2	8	68939468	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	4840488	68939468	77424554	51	7075											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72966074	72966074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPA1	NM_007332	exon13	c.C1558G	p.H520D	ACGCATGATGCAA	.	151	24	49	0	.	230	C	72966074	G	C	72966074	3	2	49	1	0	0	0	0	1	0	0	0	16574	1290	45	4	1861	4	TRPA1	8	72966074	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	4026606	72966074	73397948	52	7076											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77767241	77767241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFHX4	NM_024721	exon10	c.G8084T	p.R2695L	ACATTCGCTCTCG	.	175	36	36	0	.	98	T	77767241	G	T	77767241	3	4	49	1	0	0	0	0	1	0	0	0	17632	1087	38	1	8118	1	ZFHX4	8	77767241	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	4801167	77767241	68596781	53	7077											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113988234	113988234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CSMD3,NS,carcinoma,0	CSMD3	NM_198123	exon7	c.G1174A	p.E392K	GTTCCTCGGAAAG	.	404	85	101	0	.	1132	T	113988234	C	T	113988234	3	4	49	1	0	0	0	0	1	0	0	0	3946	893	31	1	10209	1	CSMD3	8	113988234	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	36220993	113988234	32375788	54	7078											
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124267557	124267557	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZHX1	NM_007222	exon3	c.A630G	p.K210K	ATTCTCTTTCTCT	.	608	126	109	0	.	91	C	124267557	T	C	124267557	2	2	49	1	0	0	0	0	0	0	0	1	17672	1606	56	2		2	ZHX1	8	124267557	Silent	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	10279323	124267557	22096465	55	7079											
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231707	142231707	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC45A4	NM_001080431	exon2	c.C246T	p.G82G	TGCAACGCCAAAG	.	157	39	27	0	.	70	A	142231707	G	A	142231707	2	1	49	1	0	0	0	0	0	0	0	1	14643	1074	38	1		1	SLC45A4	8	142231707	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	17964150	142231707	4132315	56	7080											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144945358	144945358	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPPK1	NM_031308	exon1	c.C2064A	p.V688V	GCCAGTGACAGCG	.	209	40	37	0	.	25	T	144945358	G	T	144945358	2	4	49	1	0	0	0	0	0	0	0	1	5190	1277	45	3		3	EPPK1	8	144945358	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	2713651	144945358	1418664	57	7081											
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	34623647	34623647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARID3C	NM_001017363	exon4	c.C640A	p.Q214K	CGGCCTGGAGCTC	.	32	16	19	0	.	91	T	34623647	G	T	34623647	3	4	49	1	0	0	0	0	1	0	0	0	918	1357	47	3	613	3	ARID3C	9	34623647	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		34623647	106589784	58	7082											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77400791	77400791	+	Missense_Mutation	SNP	A	A	G	rs142068228		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPM6	NM_017662	exon21	c.T2918C	p.M973T	CTCACCATTTTTG	.	99	58	48	0	A|1.000;G|0.000	335	G	77400791	A	G	77400791	3	3	49	1	0	0	0	0	1	0	0	0	16587	231	8	2	3226	2	TRPM6	9	77400791	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	42777144	77400791	63812640	59	7083											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134497245	134497245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAPGEF1	NM_198679	exon11	c.G1846A	p.G616R	CCACCCCACTGAA	.	140	80	58	0	.	849	T	134497245	C	T	134497245	3	4	49	1	0	0	0	0	1	0	0	0	13043	594	21	3	1497	3	RAPGEF1	9	134497245	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	57096454	134497245	6716186	60	7084											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140901281	140901281	+	Silent	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1B	NM_001243812	exon16	c.C2037G	p.V679V	CGGCGTCAGCAAA	.	210	143	92	0	.	138	G	140901281	C	G	140901281	2	3	49	1	0	0	0	0	0	0	0	1	2539	813	29	4		4	CACNA1B	9	140901281	Silent	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	6404036	140901281	312150	61	7085											
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17277863	17277863	+	Silent	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VIM	NM_003380	exon8	c.A1248T	p.P416P	TCTTCCAAACTTT	.	391	151	114	0	.	291	T	17277863	A	T	17277863	2	4	49	1	0	0	0	0	0	0	0	1	17163	117	5	4		4	VIM	10	17277863	Silent	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10		17277863	118256884	62	7086											
LRRC18	474354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50122143	50122143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRC18	NM_001006939	exon1	c.A58G	p.N20D	TGCAATTCCTGGC	.	53	21	37	0	.	92	C	50122143	T	C	50122143	3	2	49	1	0	0	0	0	1	0	0	0	8974	1783	62	2	735	2	LRRC18	10	50122143	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	32844280	50122143	85412604	63	7087											
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112343665	112343665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMC3	NM_005445	exon12	c.G1036A	p.E346K	CTGGCAGAAACAG	.	311	101	89	0	.	92	A	112343665	G	A	112343665	3	1	49	1	0	0	0	0	1	0	0	0	14784	943	33	3	1082	3	SMC3	10	112343665	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	62221522	112343665	23191082	64	7088											
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117228753	117228753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATRNL1	NM_207303	exon24	c.T3568C	p.S1190P	AGTTTTTCCTATG	.	84	39	71	0	.	96	C	117228753	T	C	117228753	3	2	49	1	0	0	0	0	1	0	0	0	1207	1783	62	2	3662	2	ATRNL1	10	117228753	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	4885088	117228753	18305994	65	7089											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	135025348	135025348	+	Missense_Mutation	SNP	G	G	T	rs201175312	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KNDC1	NM_152643	exon23	c.G4222T	p.G1408C	GAGGACGGCATCT	.	36	21	11	0	G|0.999;A|0.001	229	T	135025348	G	T	135025348	3	4	49	1	0	0	0	0	1	0	0	0	8426	1116	39	1	4312	1	KNDC1	10	135025348	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	17796595	135025348	509399	66	7090											
CDHR5	53841	ucsc.edu;bcgsc.ca	37	11	618860	618860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDHR5	NM_021924	exon13	c.A1699G	p.S567G	CCCCACTGGGTGT	.	389	50	84	0	.	90	C	618860	T	C	618860	3	2	49	1	0	0	0	0	1	0	0	0	3122	1580	55	2	850	2	CDHR5	11	618860	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10		618860	134387656	67	7091											
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11927068	11927068	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP47	NM_017944	exon7	c.T738C	p.Y246Y	ACCTTATGGGTCC	.	230	89	86	0	.	660	C	11927068	T	C	11927068	2	2	49	1	0	0	0	0	0	0	0	1	17075	1471	51	2		2	USP47	11	11927068	Silent	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	11308208	11927068	123079448	68	7092											
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63585307	63585307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C11orf84	NM_138471	exon2	c.G158C	p.R53T	CGCCTAGACCCAG	.	87	24	38	0	.	90	C	63585307	G	C	63585307	3	2	49	1	0	0	0	0	1	0	0	0	1667	942	33	4	164	4	C11orf84	11	63585307	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	51658239	63585307	71421209	69	7093											
MAP4K2	5871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64564456	64564456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP4K2	NM_004579	exon20	c.C1405A	p.H469N	TTACATGCACCTT	.	130	57	53	0	.	360	T	64564456	G	T	64564456	3	4	49	1	0	0	0	0	1	0	0	0	9260	1319	46	3	1109	3	MAP4K2	11	64564456	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	979149	64564456	70442060	70	7094											
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65320914	65320914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LTBP3	NM_001130144	exon4	c.A952C	p.K318Q	GACACTTGTGGCA	.	160	66	48	0	.	91	G	65320914	T	G	65320914	3	3	49	1	0	0	0	0	1	0	0	0	9075	1821	63	5	3059	5	LTBP3	11	65320914	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	756458	65320914	69685602	71	7095											
TBX10	347853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	67399113	67399113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TBX10	NM_005995	exon8	c.C1121T	p.T374I	ACCACAGTGGGGG	.	44	18	12	0	.	90	A	67399113	G	A	67399113	3	1	49	1	0	0	0	0	1	0	0	0	15648	1029	36	3	40	3	TBX10	11	67399113	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	2078199	67399113	67607403	72	7096											
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu	37	11	71726211	71726220	+	Frame_Shift_Del	DEL	CCTGATGGGC	CCTGATGGGC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CCTGATGGGC	CCTGATGGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NUMA1	NM_006185	exon15	c.2329_2338del	p.777_780del	TCTCAGCCTGATG	.	70	10	23	0	.	633	-	71726220	CCTGATGGGC	-	71726211	7	5	49	1	0	1	0	1	0	0	0	0	10750	739	26	0	4061	0	NUMA1	11	71726211	Frame_Shift_Del	DEL	CCTGATGGGC	TCGA-DD-A116-01A-11D-A12Z-10	4327098	71726211	63280305	73	7097											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85436897	85436897	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYTL2	NM_206927	exon1	c.T603C	p.N201N	TGTCCTATTTTCA	.	451	158	134	0	.	137	G	85436897	A	G	85436897	2	3	49	1	0	0	0	0	0	0	0	1	15480	446	16	2		2	SYTL2	11	85436897	Silent	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	13710686	85436897	49569619	74	7098											
SESN3	143686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94918494	94918494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SESN3	NM_144665	exon5	c.A688G	p.N230D	AATTGTTGACTGA	.	134	47	95	0	.	90	C	94918494	T	C	94918494	3	2	49	1	0	0	0	0	1	0	0	0	14126	1812	63	2	814	2	SESN3	11	94918494	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	9481597	94918494	40088022	75	7099											
ERC1	23085	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1517402	1517402	+	Missense_Mutation	SNP	T	T	A	rs140227397	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ERC1	NM_178040	exon17	c.T3013A	p.S1005T	AAGCCCTCCCCAG	.	63	18	17	0	T|1.000;C|0.000	660	A	1517402	T	A	1517402	3	1	49	1	0	0	0	0	1	0	0	0	5210	1551	54	4	3075	4	ERC1	12	1517402	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10		1517402	132334493	76	7100											
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7177505	7177505	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C1S	NM_201442	exon12	c.G1617A	p.V539V	CCCAGTGAAAATG	.	87	33	35	0	.	91	A	7177505	G	A	7177505	2	1	49	1	0	0	0	0	0	0	0	1	1974	1277	45	3		3	C1S	12	7177505	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	5660103	7177505	126674390	77	7101											
PRB4	5545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11461456	11461456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRB4	NM_002723	exon3	c.G461T	p.G154V	GGGGGACCTTGGG	.	500	173	144	0	.	91	A	11461456	C	A	11461456	3	1	49	1	0	0	0	0	1	0	0	0	12445	507	18	3	286	3	PRB4	12	11461456	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	4283951	11461456	122390439	78	7102											
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	40499574	40499574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC2A13	NM_052885	exon1	c.C37G	p.L13V	TCCGCAGCGTGTA	.	56	22	9	0	.	515	C	40499574	G	C	40499574	3	2	49	1	0	0	0	0	1	0	0	0	14542	962	34	4	1949	4	SLC2A13	12	40499574	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	29038118	40499574	93352321	79	7103											
ACVRL1	94	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52307800	52307800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACVRL1	NM_000020	exon5	c.C568T	p.L190F	TCAGGGCTCCCCT	.	171	71	44	0	.	521	T	52307800	C	T	52307800	3	4	49	1	0	0	0	0	1	0	0	0	225	797	28	3	582	3	ACVRL1	12	52307800	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	11808226	52307800	81544095	80	7104											
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52826871	52826871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRT75	NM_004693	exon2	c.G664T	p.E222X	CAGCTTCAAGCCT	.	192	83	53	0	.	90	A	52826871	C	A	52826871	4	1	49	1	0	0	0	0	0	1	0	0	8488	835	29	3	1023	3	KRT75	12	52826871	Nonsense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	519071	52826871	81025024	81	7105											
PAWR	5074	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	80083895	80083895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PAWR	NM_002583	exon2	c.G130T	p.G44W	TGCCCCCTCCCGG	.	22	6	15	0	.	90	A	80083895	C	A	80083895	3	1	49	1	0	0	0	0	1	0	0	0	11477	681	24	3	916	3	PAWR	12	80083895	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	27257024	80083895	53768000	82	7106											
UBE3B	89910	ucsc.edu;bcgsc.ca	37	12	109939174	109939174	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UBE3B	NM_183415	exon13	c.1119-2A>G	.	TCTCCTAGCCTTA	.	44	5	29	0	.	660	G	109939174	A	G	109939174	5	3	49	1	0	0	0	0	0	0	1	0	16877	434	15	2	1159	2	UBE3B	12	109939174	Splice_Site	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	29855279	109939174	23912721	83	7107											
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110385195	110385195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GIT2	NM_001135214	exon15	c.A1507G	p.R503G	GACGTCTCTTTAA	.	282	98	88	0	.	226	C	110385195	T	C	110385195	3	2	49	1	0	0	0	0	1	0	0	0	6397	1559	54	2	796	2	GIT2	12	110385195	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	446021	110385195	23466700	84	7108											
PPP1CC	5501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	111162541	111162541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPP1CC	NM_002710	exon4	c.G447A	p.W149X	AGTTTTCCATAGT	.	362	40	99	0	.	1082	T	111162541	C	T	111162541	4	4	49	1	0	0	0	0	0	1	0	0	12351	856	30	3	540	3	PPP1CC	12	111162541	Nonsense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	777346	111162541	22689354	85	7109											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117696926	117696926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NOS1	NM_000620	exon15	c.A2377G	p.M793V	CTTCCATGGACAT	.	156	58	43	0	.	154	C	117696926	T	C	117696926	3	2	49	1	0	0	0	0	1	0	0	0	10541	1464	51	2	1987	2	NOS1	12	117696926	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	6534385	117696926	16154969	86	7110											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39265478	39265478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FREM2	NM_207361	exon1	c.G3997C	p.D1333H	GATTTAGATTCAG	.	73	42	64	0	.	100	C	39265478	G	C	39265478	3	2	49	1	0	0	0	0	1	0	0	0	6045	942	33	4	3999	4	FREM2	13	39265478	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		39265478	75904400	87	7111											
POTEG	404785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	19553573	19553573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POTEG	NM_001005356	exon1	c.G157T	p.A53S	GATTCTGCTATGA	.	1087	131	173	0	.	1	T	19553573	G	T	19553573	3	4	49	1	0	0	0	0	1	0	0	0	12266	1319	46	3	159	3	POTEG	14	19553573	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		19553573	87795967	88	7112											
CCNB1IP1	57820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	20779825	20779826	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CCNB1IP1	NM_021178	exon7	c.718_719insT	p.A240fs	AACCCGCAAAAAA	.	291	83	90	0	.	659	A	20779826	-	A	20779825	7	5	49	1	0	1	1	0	0	0	0	0	2912	710	25	0	119	0	CCNB1IP1	14	20779825	Frame_Shift_Ins	INS	-	TCGA-DD-A116-01A-11D-A12Z-10	1226252	20779825	86569715	89	7113											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20872028	20872028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TEP1	NM_007110	exon6	c.G1048T	p.D350Y	TCTTATCTCCCTC	.	56	26	22	0	.	95	A	20872028	C	A	20872028	3	1	49	1	0	0	0	0	1	0	0	0	15756	913	32	3	7035	3	TEP1	14	20872028	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	92203	20872028	86477512	90	7114											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23866803	23866803	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYH6	NM_002471	exon16	c.A1911T	p.K637N	GCCTCCTTTGCTT	.	89	23	37	0	.	94	A	23866803	T	A	23866803	3	1	49	1	0	0	0	0	1	0	0	0	10038	1606	56	4	4004	4	MYH6	14	23866803	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	2994775	23866803	83482737	91	7115											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23883217	23883217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYH7	NM_000257	exon38	c.C5654T	p.A1885V	CTCACCGCCTCCT	.	121	51	58	0	.	94	A	23883217	G	A	23883217	3	1	49	1	0	0	0	0	1	0	0	0	10039	1101	38	1	165	1	MYH7	14	23883217	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	16414	23883217	83466323	92	7116											
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60921835	60921835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C14orf39	NM_174978	exon16	c.G1387C	p.V463L	TTTGAACTTCAGG	.	252	89	104	0	.	94	G	60921835	C	G	60921835	3	3	49	1	0	0	0	0	1	0	0	0	1772	565	20	4	388	4	C14orf39	14	60921835	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	37038618	60921835	46427705	93	7117											
ADCK1	57143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78353552	78353552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADCK1	NM_020421	exon5	c.A542G	p.K181R	ACCCAAAGGTGCG	.	50	22	23	0	.	334	G	78353552	A	G	78353552	3	3	49	1	0	0	0	0	1	0	0	0	288	72	3	2	556	2	ADCK1	14	78353552	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	17431717	78353552	28995988	94	7118											
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35084616	35084616	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACTC1	NM_005159	exon4	c.C609T	p.V203V	AGTGGTGACAAAG	.	164	54	66	0	.	92	A	35084616	G	A	35084616	2	1	49	1	0	0	0	0	0	0	0	1	195	1277	45	3		3	ACTC1	15	35084616	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		35084616	67446776	95	7119											
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	40757537	40757537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BAHD1	NM_014952	exon6	c.T2056A	p.L686M	GAGCCCTTGCAGA	.	182	69	70	0	.	90	A	40757537	T	A	40757537	3	1	49	1	0	0	0	0	1	0	0	0	1297	1606	56	4	2074	4	BAHD1	15	40757537	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	5672921	40757537	61773855	96	7120											
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52251010	52251010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LEO1	NM_138792	exon6	c.C1174A	p.Q392K	AATACTGAGGATC	.	280	101	101	0	.	68	T	52251010	G	T	52251010	3	4	49	1	0	0	0	0	1	0	0	0	8726	1299	45	3	854	3	LEO1	15	52251010	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	11493473	52251010	50280382	97	7121											
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56387675	56387675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RFX7	NM_022841	exon9	c.T2251G	p.S751A	ATGATGATGGGGT	.	81	37	57	0	.	90	C	56387675	A	C	56387675	3	2	49	1	0	0	0	0	1	0	0	0	13268	333	12	5	2135	5	RFX7	15	56387675	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	4136665	56387675	46143717	98	7122											
TIGD7	91151	hgsc.bcm.edu;broad.mit.edu	37	16	3350520	3350536	+	Frame_Shift_Del	DEL	ATTACACTTTTAAGTGA	ATTACACTTTTAAGTGA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	ATTACACTTTTAAGTGA	ATTACACTTTTAAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TIGD7	NM_033208	exon2	c.79_95del	p.27_32del	TCATCCATTACAC	.	260	75	64	0	.	90	-	3350536	ATTACACTTTTAAGTGA	-	3350520	7	5	49	1	0	1	0	1	0	0	0	0	15898	217	8	0	1558	0	TIGD7	16	3350520	Frame_Shift_Del	DEL	ATTACACTTTTAAGTGA	TCGA-DD-A116-01A-11D-A12Z-10		3350520	87004233	99	7123											
ADAT1	23536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	75637056	75637056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAT1	NM_012091	exon10	c.A1303G	p.K435E	CCACTTTGCTGAT	.	90	49	55	0	.	92	C	75637056	T	C	75637056	3	2	49	1	0	0	0	0	1	0	0	0	284	1821	63	2	213	2	ADAT1	16	75637056	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	72286536	75637056	14717697	100	7124											
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7951723	7951723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALOX15B	NM_001141	exon14	c.C1871T	p.P624L	CCTATCCGGATGA	.	35	20	19	0	.	227	T	7951723	C	T	7951723	3	4	49	1	0	0	0	0	1	0	0	0	539	652	23	1	1925	1	ALOX15B	17	7951723	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10		7951723	73243487	101	7125											
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	12016635	12016636	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP2K4	NM_003010	exon7	c.771_772del	p.257_258del	GGACTCTATTGCC	.	71	37	50	0	.	3134	-	12016636	TA	-	12016635	7	5	49	1	0	1	0	1	0	0	0	0	9239	1509	53	0	797	0	MAP2K4	17	12016635	Frame_Shift_Del	DEL	TA	TCGA-DD-A116-01A-11D-A12Z-10	4064912	12016635	69178575	102	7126											
VTN	7448	broad.mit.edu;bcgsc.ca	37	17	26694414	26694414	+	Silent	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VTN	NM_000638	exon8	c.C1413G	p.G471G	TGGGCAGCCCAGC	.	95	38	29	2	.	227	C	26694414	G	C	26694414	2	2	49	1	0	0	0	0	0	0	0	1	17234	958	34	4		4	VTN	17	26694414	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	14677779	26694414	54500796	103	7127											
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26851109	26851109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FOXN1	NM_003593	exon1	c.G122T	p.S41I	CACAGAGTGTAAG	.	78	34	37	0	.	226	T	26851109	G	T	26851109	3	4	49	1	0	0	0	0	1	0	0	0	6019	1043	36	3	124	3	FOXN1	17	26851109	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	156695	26851109	54344101	104	7128											
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP4-3	NM_033187	exon1	c.T321C	p.S107S	GCAACTAGAAATG	.	310	26	91	0	.	22	G	39324104	A	G	39324104	2	3	49	1	0	0	0	0	0	0	0	1	8552	407	15	2		2	KRTAP4-3	17	39324104	Silent	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	12472995	39324104	41871106	105	7129											
MRPL10	124995	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	45906024	45906024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MRPL10	NM_148887	exon3	c.C95T	p.T32I	TGGAGGGTAGGCA	.	39	16	15	0	.	91	A	45906024	G	A	45906024	3	1	49	1	0	0	0	0	1	0	0	0	9775	1261	44	3	736	3	MRPL10	17	45906024	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	6581920	45906024	35289186	106	7130											
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74383503	74383503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SPHK1	NM_182965	exon6	c.C1249G	p.P417A	TTGGAGCCCAAGG	.	187	56	51	0	.	1107	G	74383503	C	G	74383503	3	3	49	1	0	0	0	0	1	0	0	0	15045	739	26	4	1313	4	SPHK1	17	74383503	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	28477479	74383503	6811707	107	7131											
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76802273	76802273	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP36	NM_025090	exon15	c.C2181T	p.P727P	AACGACGGGGTGA	.	141	69	34	0	.	659	A	76802273	G	A	76802273	2	1	49	1	0	0	0	0	0	0	0	1	17064	1103	39	1		1	USP36	17	76802273	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	2418770	76802273	4392937	108	7132											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5433469	5433469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPB41L3	NM_012307	exon8	c.A911T	p.K304M	CATACCTTAGCAT	.	85	27	42	0	.	95	A	5433469	T	A	5433469	3	1	49	1	0	0	0	0	1	0	0	0	5154	1623	56	4	2412	4	EPB41L3	18	5433469	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10		5433469	72643779	109	7133											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9256402	9256402	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD12	NM_015208	exon9	c.A3137T	p.K1046I	AACTAAAATCTGA	.	239	64	122	0	.	92	T	9256402	A	T	9256402	3	4	49	1	0	0	0	0	1	0	0	0	640	14	1	4	3167	4	ANKRD12	18	9256402	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	3822933	9256402	68820846	110	7134											
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21125036	21125036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NPC1	NM_000271	exon12	c.A1835G	p.E612G	TTTAGTTCATCTT	.	334	115	89	0	.	92	C	21125036	T	C	21125036	3	2	49	1	0	0	0	0	1	0	0	0	10570	1783	62	2	2057	2	NPC1	18	21125036	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	11868634	21125036	56952212	111	7135											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	40850324	40850324	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYT4	NM_020783	exon4	c.C1260T	p.H420H	GAGCACGTGCCAC	.	172	10	79	0	.	132	A	40850324	G	A	40850324	2	1	49	1	0	0	0	0	0	0	0	1	15473	1136	40	1		1	SYT4	18	40850324	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	19725288	40850324	37226924	112	7136											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63430104	63430104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDH7	NM_004361	exon2	c.G26T	p.C9F	AGTTCTGCCATTT	.	94	31	54	0	.	94	T	63430104	G	T	63430104	3	4	49	1	0	0	0	0	1	0	0	0	3115	1319	46	3	28	3	CDH7	18	63430104	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	22579780	63430104	14647144	113	7137											
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3527733	3527733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FZR1	NM_001136198	exon6	c.T575G	p.L192R	TCAATCTGGTGGA	.	160	47	50	0	.	227	G	3527733	T	G	3527733	3	3	49	1	0	0	0	0	1	0	0	0	6138	1580	55	5	597	5	FZR1	19	3527733	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10		3527733	55601250	114	7138											
C19orf10	56005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4658077	4658077	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C19orf10	NM_019107	exon6	c.A462T	p.A154A	TTTGAATGCCCCG	.	38	11	23	0	.	90	A	4658077	T	A	4658077	2	1	49	1	0	0	0	0	0	0	0	1	1908	1451	51	4		4	C19orf10	19	4658077	Silent	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	1130344	4658077	54470906	115	7139											
ZNF414	84330	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	8576572	8576572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF414	NM_032370	exon5	c.G803T	p.R268L	CGCAGGCGCGGGG	.	34	19	11	0	.	90	A	8576572	C	A	8576572	3	1	49	1	0	0	0	0	1	0	0	0	17888	768	27	1	399	1	ZNF414	19	8576572	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	3918495	8576572	50552411	116	7140											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9002558	9002558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon51	c.C40258A	p.H13420N	TGCCGTGGGTCAG	.	362	117	99	0	.	566	T	9002558	G	T	9002558	3	4	49	1	0	0	0	0	1	0	0	0	9973	1348	47	3	3401	3	MUC16	19	9002558	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	425986	9002558	50126425	117	7141											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087113	9087113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon1	c.A4702G	p.T1568A	ACTGTGTCACGTG	.	406	153	139	0	.	566	C	9087113	T	C	9087113	3	2	49	1	0	0	0	0	1	0	0	0	9973	1667	58	2	39157	2	MUC16	19	9087113	Missense_Mutation	SNP	T	TCGA-DD-A116-01A-11D-A12Z-10	84555	9087113	50041870	118	7142											
ZNF676	163223	hgsc.bcm.edu;bcgsc.ca	37	19	22363952	22363953	+	Missense_Mutation	DNP	AC	AC	TA	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.S189I	ATGAATACTCTTA	.	98	31	60	0	.	.	TA	22363953	AC	TA	22363952	3	4	49	1	0	0	0	0	1	0	0	0	18080	388	14	4	1203	4	ZNF676	19	22363952	Missense_Mutation	DNP	AC	TCGA-DD-A116-01A-11D-A12Z-10	13276839	22363952	36765031	119	7143	41	2									
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22363957	22363958	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF676	NM_001001411	exon3	c.561_562del	p.187_188del	TACTCTTATAATA	.	110	30	61	0	.	90	-	22363958	TA	-	22363957	7	5	49	1	0	1	0	1	0	0	0	0	18080	1763	61	0	1208	0	ZNF676	19	22363957	Frame_Shift_Del	DEL	TA	TCGA-DD-A116-01A-11D-A12Z-10	5	22363957	36765026	120	7144	41	2									
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31038933	31038933	+	Missense_Mutation	SNP	C	C	T	rs140147461		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF536	NM_014717	exon4	c.C2407T	p.R803W	CACCATCGGGAGC	.	118	47	37	0	C|1.000;T|0.000	144	T	31038933	C	T	31038933	3	4	49	1	0	0	0	0	1	0	0	0	17971	875	31	1	2417	1	ZNF536	19	31038933	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	8674976	31038933	28090050	121	7145											
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37309866	37309869	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AAGA	AAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF790	NM_206894	exon5	c.1377_1380del	p.459_460del	GCCATGAAGAAAG	.	174	51	68	0	.	92	-	37309869	AAGA	-	37309866	7	5	49	1	0	1	0	1	0	0	0	0	18159	233	9	0	534	0	ZNF790	19	37309866	Frame_Shift_Del	DEL	AAGA	TCGA-DD-A116-01A-11D-A12Z-10	6270933	37309866	21819117	122	7146											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40424311	40424311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FCGBP	NM_003890	exon4	c.C1892G	p.P631R	GCGTCAGGAGCCA	.	104	40	44	0	.	98	C	40424311	G	C	40424311	3	2	49	1	0	0	0	0	1	0	0	0	5778	1000	35	4	14457	4	FCGBP	19	40424311	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	3114445	40424311	18704672	123	7147											
PHLDB3	653583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43983597	43983597	+	Missense_Mutation	SNP	C	C	A	rs200179651	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PHLDB3	NM_198850	exon14	c.G1634T	p.R545L	TTGATGCGGCCGC	.	165	63	39	0	.	68	A	43983597	C	A	43983597	3	1	49	1	0	0	0	0	1	0	0	0	11853	768	27	1	300	1	PHLDB3	19	43983597	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	3559286	43983597	15145386	124	7148											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55148212	55148212	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LILRB1	NM_001081637	exon15	c.G1842A	p.V614V	GGATGTGACCTAC	.	385	105	119	0	.	137	A	55148212	G	A	55148212	2	1	49	1	0	0	0	0	0	0	0	1	8790	1277	45	3		3	LILRB1	19	55148212	Silent	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	11164615	55148212	3980771	125	7149											
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58489830	58489830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF606	NM_025027	exon7	c.C2218T	p.H740Y	CACAATGATTACA	.	269	11	100	0	.	92	A	58489830	G	A	58489830	3	1	49	1	0	0	0	0	1	0	0	0	18029	1290	45	3	164	3	ZNF606	19	58489830	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	3341618	58489830	639153	126	7150											
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4163387	4163387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMOX	NM_175839	exon5	c.G1261T	p.G421C	CGCTACGGCCATG	.	165	67	62	0	.	153	T	4163387	G	T	4163387	3	4	49	1	0	0	0	0	1	0	0	0	14803	1116	39	1	1275	1	SMOX	20	4163387	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		4163387	58862133	127	7151											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50769740	50769740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFP64	NM_018197	exon6	c.C991T	p.R331W	GCTTCCGGAGGGT	.	244	101	78	0	.	155	A	50769740	G	A	50769740	3	1	49	1	0	0	0	0	1	0	0	0	17649	1115	39	1	2249	1	ZFP64	20	50769740	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	46606353	50769740	12255780	128	7152											
KRTAP13-2	337959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31744410	31744410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP13-2	NM_181621	exon1	c.G122T	p.C41F	GGAGAGCAGAGGT	.	225	76	79	0	.	90	A	31744410	C	A	31744410	3	1	49	1	0	0	0	0	1	0	0	0	8523	710	25	3	409	3	KRTAP13-2	21	31744410	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10		31744410	16385485	129	7153											
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45094517	45094517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RRP1B	NM_015056	exon5	c.C358A	p.L120M	CTTTAGCTGATTC	.	175	55	60	0	.	91	A	45094517	C	A	45094517	3	1	49	1	0	0	0	0	1	0	0	0	13688	811	28	3	376	3	RRP1B	21	45094517	Missense_Mutation	SNP	C	TCGA-DD-A116-01A-11D-A12Z-10	13350107	45094517	3035378	130	7154											
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19376069	19376069	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HIRA	NM_003325	exon10	c.T945C	p.C315C	TTTCAGACATGTG	.	100	41	41	0	.	91	G	19376069	A	G	19376069	2	3	49	1	0	0	0	0	0	0	0	1	7120	273	10	2		2	HIRA	22	19376069	Silent	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10		19376069	31928497	131	7155											
HMGXB4	10042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35661228	35661228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HMGXB4	NM_001003681	exon5	c.G847A	p.D283N	AACCTTGATCTTT	.	228	72	72	0	.	272	A	35661228	G	A	35661228	3	1	49	1	0	0	0	0	1	0	0	0	7239	1290	45	3	861	3	HMGXB4	22	35661228	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	16285159	35661228	15643338	132	7156											
SHROOM2	357	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	9863964	9863964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SHROOM2	NM_001649	exon4	c.G2016T	p.Q672H	CACCCAGGAAGGA	.	33	21	9	0	.	198	T	9863964	G	T	9863964	3	4	49	1	0	0	0	0	1	0	0	0	14294	991	35	3	2030	3	SHROOM2	23	9863964	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10		9863964	145406596	133	7157											
PDK3	5165	broad.mit.edu;bcgsc.ca	37	X	24549826	24549826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PDK3	NM_005391	exon10	c.A1016C	p.Q339P	ATTTTCAAGGAGA	.	395	22	98	1	.	377	C	24549826	A	C	24549826	3	2	49	1	0	0	0	0	1	0	0	0	11677	130	5	5	1054	5	PDK3	23	24549826	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	14685862	24549826	130720734	134	7158											
LPAR4	2846	ucsc.edu;bcgsc.ca	37	X	78011334	78011334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LPAR4	NM_005296	exon2	c.A968T	p.Y323F	CCTTCTACATCAA	.	40	4	50	0	.	133	T	78011334	A	T	78011334	3	4	49	1	0	0	0	0	1	0	0	0	8907	391	14	4	970	4	LPAR4	23	78011334	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	53461508	78011334	77259226	135	7159											
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	89177754	89177754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TGIF2LX	NM_138960	exon2	c.G670A	p.A224T	GATGCAGCAGTAC	.	275	216	78	0	.	92	A	89177754	G	A	89177754	3	1	49	1	0	0	0	0	1	0	0	0	15824	971	34	3	672	3	TGIF2LX	23	89177754	Missense_Mutation	SNP	G	TCGA-DD-A116-01A-11D-A12Z-10	11166420	89177754	66092806	136	7160											
PLP1	5354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103041518	103041518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PLP1	NM_001128834	exon4	c.A316G	p.T106A	TACAAGACCACCA	.	169	131	86	0	.	555	G	103041518	A	G	103041518	3	3	49	1	0	0	0	0	1	0	0	0	12104	275	10	2	326	2	PLP1	23	103041518	Missense_Mutation	SNP	A	TCGA-DD-A116-01A-11D-A12Z-10	13863764	103041518	52229042	137	7161											
KLHL21	9903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6661869	6661869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KLHL21	NM_014851	exon1	c.A1009T	p.I337F	CGTAGATGTCATT	.	82	25	101	1	.	514	A	6661869	T	A	6661869	3	1	50	1	0	0	0	0	1	0	0	0	8376	1464	51	4	800	4	KLHL21	1	6661869	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10		6661869	242588752	1	7162											
CAMTA1	23261	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	7724363	7724363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CAMTA1	NM_015215	exon9	c.T1756G	p.F586V	ATGGACTTCAGCG	.	53	19	69	0	.	520	G	7724363	T	G	7724363	3	3	50	1	0	0	0	0	1	0	0	0	2613	1609	56	5	1790	5	CAMTA1	1	7724363	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	1062494	7724363	241526258	2	7163											
KIAA1522	57648	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	33236078	33236078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA1522	NM_020888	exon6	c.C1298T	p.S433F	CCCTCTCCTCTAA	.	28	5	35	0	.	90	T	33236078	C	T	33236078	3	4	50	1	0	0	0	0	1	0	0	0	8238	855	30	3	1320	3	KIAA1522	1	33236078	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	25511715	33236078	216014543	3	7164											
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	36757042	36757042	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	THRAP3	NM_005119	exon6	c.C1813T	p.Q605X	AAGGAACAGGAGT	.	213	67	267	0	.	663	T	36757042	C	T	36757042	4	4	50	1	0	0	0	0	0	1	0	0	15871	479	17	3	1827	3	THRAP3	1	36757042	Nonsense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	3520964	36757042	212493579	4	7165											
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46083194	46083194	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NASP	NM_002482	exon14	c.G2217A	p.P739P	AGAGCCGGAGGTG	.	35	12	47	0	.	91	A	46083194	G	A	46083194	2	1	50	1	0	0	0	0	0	0	0	1	10172	1103	39	1		1	NASP	1	46083194	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	9326152	46083194	203167427	5	7166											
BEND5	79656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	49242456	49242456	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BEND5	NM_024603	exon1	c.G48A	p.L16L	CACGGGCAGCGCG	.	61	22	40	0	.	91	T	49242456	C	T	49242456	2	4	50	1	0	0	0	0	0	0	0	1	1401	697	25	3		3	BEND5	1	49242456	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	3159262	49242456	200008165	6	7167											
C1orf173	127254	ucsc.edu;bcgsc.ca	37	1	75114955	75114955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1orf173	NM_001002912	exon2	c.G68A	p.G23E	AAATACCCAGCCA	.	39	4	73	0	.	94	T	75114955	C	T	75114955	3	4	50	1	0	0	0	0	1	0	0	0	2014	623	22	3	4576	3	C1orf173	1	75114955	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	25872499	75114955	174135666	7	7168											
SV2A	9900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149881036	149881036	+	Missense_Mutation	SNP	G	G	A	rs200303127		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SV2A	NM_014849	exon7	c.C1267T	p.R423W	AGGCCCGGACCCC	.	274	36	173	0	G|0.999;A|0.000	97	A	149881036	G	A	149881036	3	1	50	1	0	0	0	0	1	0	0	0	15414	1115	39	1	989	1	SV2A	1	149881036	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	74766081	149881036	99369585	8	7169											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281525	152281525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FLG	NM_002016	exon3	c.C5837T	p.A1946V	TCCCAAGCAGATC	.	734	151	683	0	.	106	A	152281525	G	A	152281525	3	1	50	1	0	0	0	0	1	0	0	0	5922	971	34	3	6352	3	FLG	1	152281525	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	2400489	152281525	96969096	9	7170											
CD1D	912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158151319	158151319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD1D	NM_001766	exon3	c.G136A	p.G46S	ACCGACGGCTTGG	.	104	17	66	0	.	92	A	158151319	G	A	158151319	3	1	50	1	0	0	0	0	1	0	0	0	2977	1116	39	1	142	1	CD1D	1	158151319	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	5869794	158151319	91099302	10	7171											
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549059	158549059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR10X1	NM_001004477	exon1	c.A631G	p.T211A	ATTCTGTGTGGTT	.	235	39	159	0	.	69	C	158549059	T	C	158549059	3	2	50	1	0	0	0	0	1	0	0	0	10922	1696	59	2	344	2	OR10X1	1	158549059	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	397740	158549059	90701562	11	7172											
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159912756	159912756	+	Missense_Mutation	SNP	C	C	A	rs113355407	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	IGSF9,NS,carcinoma,0	IGSF9	NM_001135050	exon3	c.G244T	p.V82L	TACCCACGTAATC	.	97	20	93	0	C|0.500;T|0.500	156	A	159912756	C	A	159912756	3	1	50	1	0	0	0	0	1	0	0	0	7605	536	19	1	3371	1	IGSF9	1	159912756	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	1363697	159912756	89337865	12	7173											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216073535	216073535	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	USH2A	NM_206933	exon40	c.G7476A	p.S2492S	GCTTAACGATGCA	.	83	19	71	0	.	115	T	216073535	C	T	216073535	2	4	50	1	0	0	0	0	0	0	0	1	17033	523	19	1		1	USH2A	1	216073535	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	56160779	216073535	33177086	13	7174											
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222802656	222802656	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MIA3	NM_198551	exon4	c.2094delG	p.Q698fs	AATGCAGGGCACA	.	153	27	147	0	.	98	-	222802656	G	-	222802656	7	5	50	1	0	1	0	1	0	0	0	0	9565	991	35	0	2108	0	MIA3	1	222802656	Frame_Shift_Del	DEL	G	TCGA-DD-A118-01A-11D-A12Z-10	6729121	222802656	26447965	14	7175											
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223567608	223567609	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	p.L264P	TGGTGCTGACCCG	.	182	26	142	0	.	.	CT	223567609	TG	CT	223567608	3	2	50	1	0	0	0	0	1	0	0	0	2055	1580	55	2	793	2	C1orf65	1	223567608	Missense_Mutation	DNP	TG	TCGA-DD-A118-01A-11D-A12Z-10	764952	223567608	25683013	15	7176											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225609820	225609820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LBR	NM_194442	exon3	c.G325T	p.A109S	TCCTTGCTTCCTT	.	76	16	69	0	.	228	A	225609820	C	A	225609820	3	1	50	1	0	0	0	0	1	0	0	0	8652	797	28	3	1570	3	LBR	1	225609820	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	2042212	225609820	23640801	16	7177											
KLF11	8462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10188154	10188154	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KLF11	NM_003597	exon3	c.C690T	p.S230S	GGTGTCCTGTCAG	.	62	20	58	0	.	228	T	10188154	C	T	10188154	2	4	50	1	0	0	0	0	0	0	0	1	8339	668	24	3		3	KLF11	2	10188154	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10		10188154	233011219	17	7178											
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656071	40656071	+	Silent	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC8A1	NM_001252624	exon1	c.A1350T	p.T450T	ATTTGCTGTGCCA	.	70	10	83	0	.	93	A	40656071	T	A	40656071	2	1	50	1	0	0	0	0	0	0	0	1	14706	1567	55	4		4	SLC8A1	2	40656071	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	30467917	40656071	202543302	18	7179											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86408465	86408465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IMMT	NM_006839	exon2	c.C76G	p.P26A	GCAATGGACGGAG	.	84	18	90	0	.	91	C	86408465	G	C	86408465	3	2	50	1	0	0	0	0	1	0	0	0	7718	1174	41	4	2256	4	IMMT	2	86408465	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	45752394	86408465	156790908	19	7180											
VWA3B	200403	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98744813	98744813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VWA3B	NM_144992	exon6	c.G814T	p.A272S	TTCAACGCCAGAG	.	112	23	151	1	.	139	T	98744813	G	T	98744813	3	4	50	1	0	0	0	0	1	0	0	0	17238	1087	38	1	832	1	VWA3B	2	98744813	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	12336348	98744813	144454560	20	7181											
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101666978	101666979	+	Missense_Mutation	DNP	CC	CC	GA	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	p.D253H	CCTCATCCAGGTT	.	146	55	160	0	.	.	GA	101666979	CC	GA	101666978	3	3	50	1	0	0	0	0	1	0	0	0	15622	855	30	4	2774	4	TBC1D8	2	101666978	Missense_Mutation	DNP	CC	TCGA-DD-A118-01A-11D-A12Z-10	2922165	101666978	141532395	21	7182											
FBLN7	129804	broad.mit.edu;mdanderson.org	37	2	112942913	112942913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FBLN7	NM_153214	exon7	c.C944A	p.P315Q	CGTCTCCATTGTG	.	63	10	64	0	.	69	A	112942913	C	A	112942913	3	1	50	1	0	0	0	0	1	0	0	0	5701	594	21	3	970	3	FBLN7	2	112942913	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	11275935	112942913	130256460	22	7183											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141598619	141598619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRP1B	NM_018557	exon30	c.G4982A	p.R1661H	AAATTACGTGACA	.	170	45	193	0	.	311	T	141598619	C	T	141598619	3	4	50	1	0	0	0	0	1	0	0	0	8955	536	19	1	9065	1	LRP1B	2	141598619	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	28655706	141598619	101600754	23	7184											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179440745	179440745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TTN	NM_001267550	exon326	c.C70114G	p.P23372A	GAGCAGGACGACC	.	56	13	68	0	.	636	C	179440745	G	C	179440745	3	2	50	1	0	0	0	0	1	0	0	0	16732	1174	41	4	38013	4	TTN	2	179440745	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	37842126	179440745	63758628	24	7185											
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216248174	216248174	+	Missense_Mutation	SNP	C	C	T	rs140153061		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FN1	NM_212482	exon31	c.G4927A	p.D1643N	GAACATCGGTCAC	.	224	41	254	1	C|0.999;T|0.000	584	T	216248174	C	T	216248174	3	4	50	1	0	0	0	0	1	0	0	0	5962	884	31	1	2570	1	FN1	2	216248174	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	36807429	216248174	26951199	25	7186											
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49688366	49688366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BSN	NM_003458	exon4	c.A1840G	p.T614A	GTCCCCACTAAAG	.	53	15	95	0	.	97	G	49688366	A	G	49688366	3	3	50	1	0	0	0	0	1	0	0	0	1530	159	6	2	1854	2	BSN	3	49688366	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10		49688366	148334064	26	7187											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52440295	52440295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	BAP1,uveal_tract,malignant_melanoma,0	BAP1	NM_004656	exon9	c.C757T	p.Q253X	CTGTCTGACGGTT	.	110	65	156	1	.	1032	A	52440295	G	A	52440295	4	1	50	1	0	0	0	0	0	1	0	0	1311	1299	45	3	1468	3	BAP1	3	52440295	Nonsense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	2751929	52440295	145582135	27	7188											
ITIH3	3699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52835121	52835121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ITIH3	NM_002217	exon11	c.C1342T	p.R448W	TTTGCCCGGCGCA	.	60	26	79	0	.	93	T	52835121	C	T	52835121	3	4	50	1	0	0	0	0	1	0	0	0	7905	643	23	1	1384	1	ITIH3	3	52835121	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	394826	52835121	145187309	28	7189											
CD47	961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107799113	107799113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD47	NM_198793	exon2	c.T125G	p.F42C	GTAACAAAGCATG	.	152	40	181	0	.	91	C	107799113	A	C	107799113	3	2	50	1	0	0	0	0	1	0	0	0	3019	14	1	5	890	5	CD47	3	107799113	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	54963992	107799113	90223317	29	7190											
CHCHD6	84303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126445955	126445955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CHCHD6	NM_032343	exon2	c.C122T	p.P41L	AGGAGCCCAGCTC	.	205	51	222	0	.	90	T	126445955	C	T	126445955	3	4	50	1	0	0	0	0	1	0	0	0	3320	623	22	3	128	3	CHCHD6	3	126445955	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	18646842	126445955	71576475	30	7191											
VEPH1	79674	ucsc.edu;bcgsc.ca	37	3	157031412	157031412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VEPH1	NM_001167912	exon11	c.A2008G	p.K670E	TTACCTTCTGCTG	.	40	4	41	0	.	155	C	157031412	T	C	157031412	3	2	50	1	0	0	0	0	1	0	0	0	17151	1792	62	2	509	2	VEPH1	3	157031412	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	30585457	157031412	40991018	31	7192											
ZCCHC4	29063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	25351159	25351159	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZCCHC4	NM_024936	exon7	c.G805T	p.E269X	AAAGGCGAAGGAA	.	321	41	228	0	.	70	T	25351159	G	T	25351159	4	4	50	1	0	0	0	0	0	1	0	0	17587	1059	37	1	831	1	ZCCHC4	4	25351159	Nonsense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		25351159	165803117	32	7193											
NMU	10874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56475318	56475318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NMU	NM_006681	exon4	c.T248G	p.F83C	ATCATAAAGCAAA	.	194	33	131	0	.	650	C	56475318	A	C	56475318	3	2	50	1	0	0	0	0	1	0	0	0	10505	14	1	5	300	5	NMU	4	56475318	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	31124159	56475318	134678958	33	7194											
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71508293	71508293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ENAM	NM_031889	exon9	c.C1150G	p.P384A	GCTTACCCTCCTA	.	305	53	239	0	.	93	G	71508293	C	G	71508293	3	3	50	1	0	0	0	0	1	0	0	0	5112	623	22	4	1180	4	ENAM	4	71508293	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	15032975	71508293	119645983	34	7195											
EPGN	255324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75174267	75174267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EPGN	NM_001270993	exon1	c.C17T	p.P6L	GAGTTCCAATATC	.	343	43	391	0	.	90	T	75174267	C	T	75174267	3	4	50	1	0	0	0	0	1	0	0	0	5164	594	21	3	19	3	EPGN	4	75174267	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	3665974	75174267	115980009	35	7196											
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271533	164271533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NPY5R	NM_006174	exon4	c.T108G	p.S36R	AAGCAGTGTAGAT	.	374	89	335	0	.	523	G	164271533	T	G	164271533	3	3	50	1	0	0	0	0	1	0	0	0	10610	1693	59	5	110	5	NPY5R	4	164271533	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	89097266	164271533	26882743	36	7197											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	55272094	55272094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL6ST	NM_175767	exon3	c.C13T	p.Q5X	AAGTCTGCAACGT	.	336	89	299	0	.	290	A	55272094	G	A	55272094	4	1	50	1	0	0	0	0	0	1	0	0	7703	1328	46	3	2803	3	IL6ST	5	55272094	Nonsense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		55272094	125643166	37	7198											
BHMT2	23743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78376532	78376532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BHMT2	NM_017614	exon4	c.C281T	p.A94V	CTGCTGCCTGTGA	.	249	18	209	0	.	91	T	78376532	C	T	78376532	3	4	50	1	0	0	0	0	1	0	0	0	1426	739	26	3	295	3	BHMT2	5	78376532	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	23104438	78376532	102538728	38	7199											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140216086	140216086	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDHA7	NM_031852	exon1	c.G2118T	p.A706A	CTGCGCGGTGTCC	.	490	279	364	0	.	94	T	140216086	G	T	140216086	2	4	50	1	0	0	0	0	0	0	0	1	11529	1103	39	1		1	PCDHA7	5	140216086	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	61839554	140216086	40699174	39	7200											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140222188	140222188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDHA8	NM_031856	exon1	c.C1282T	p.R428W	ACCGCGCGGGACG	.	339	58	322	0	.	92	T	140222188	C	T	140222188	3	4	50	1	0	0	0	0	1	0	0	0	11530	759	27	1	1284	1	PCDHA8	5	140222188	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	6102	140222188	40693072	40	7201											
TCOF1	6949	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	149769583	149769583	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TCOF1	NM_001135243	exon19	c.T3180C	p.T1060T	AGCCACTCAGGTA	.	146	88	82	2	.	155	C	149769583	T	C	149769583	2	2	50	1	0	0	0	0	0	0	0	1	15705	1538	54	2		2	TCOF1	5	149769583	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	9547395	149769583	31145677	41	7202											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150932949	150932949	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAT2	NM_001447	exon6	c.3946-1G>C	.	CTTGATCTGAAAG	.	99	17	85	0	.	96	G	150932949	C	G	150932949	5	3	50	1	0	0	0	0	0	0	1	0	5690	927	32	4	9180	4	FAT2	5	150932949	Splice_Site	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	1163366	150932949	29982311	42	7203											
HIST1H4B	8366	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027241	26027241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIST1H4B	NM_003544	exon1	c.G240T	p.K80N	GACAGTCTTGCGC	.	198	30	168	1	.	70	A	26027241	C	A	26027241	3	1	50	1	0	0	0	0	1	0	0	0	7166	912	32	3	75	3	HIST1H4B	6	26027241	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10		26027241	145087826	43	7204											
HIST1H4E	8367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26204899	26204899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIST1H4E	NM_003545	exon1	c.G27C	p.K9N	CGGAAAGGGACTG	.	159	35	139	0	.	69	C	26204899	G	C	26204899	3	2	50	1	0	0	0	0	1	0	0	0	7169	991	35	4	29	4	HIST1H4E	6	26204899	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	177658	26204899	144910168	44	7205											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32181471	32181471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOTCH4	NM_004557	exon14	c.G2314T	p.V772L	CAGACACACAGTA	.	115	20	87	0	.	1321	A	32181471	C	A	32181471	3	1	50	1	0	0	0	0	1	0	0	0	10551	478	17	3	3765	3	NOTCH4	6	32181471	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	5976572	32181471	138933596	45	7206											
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56417839	56417846	+	Frame_Shift_Del	DEL	TCAGTGAC	TCAGTGAC	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TCAGTGAC	TCAGTGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DST	NM_015548	exon42	c.7875_7882del	p.2625_2628del	TCTGGATCAGTGA	.	129	11	102	0	.	523	-	56417846	TCAGTGAC	-	56417839	7	5	50	1	0	1	0	1	0	0	0	0	4783	1435	50	0	7805	0	DST	6	56417839	Frame_Shift_Del	DEL	TCAGTGAC	TCGA-DD-A118-01A-11D-A12Z-10	24236368	56417839	114697228	46	7207											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65303132	65303132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EYS	NM_001142800	exon25	c.G3755T	p.R1252I	TCTGTTCTTTGAA	.	320	49	258	0	.	660	A	65303132	C	A	65303132	3	1	50	1	0	0	0	0	1	0	0	0	5332	913	32	3	5600	3	EYS	6	65303132	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	8885293	65303132	105811935	47	7208											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90371908	90371908	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MDN1	NM_014611	exon87	c.A14463G	p.S4821S	TTTGTTTGAATTG	.	565	146	735	0	.	100	C	90371908	T	C	90371908	2	2	50	1	0	0	0	0	0	0	0	1	9415	1799	63	2		2	MDN1	6	90371908	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	25068776	90371908	80743159	48	7209											
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246895	97246895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR63	NM_030784	exon2	c.G713T	p.G238V	TGGTAGCCTGGAT	.	71	21	149	0	.	92	A	97246895	C	A	97246895	3	1	50	1	0	0	0	0	1	0	0	0	6704	739	26	3	550	3	GPR63	6	97246895	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	6874987	97246895	73868172	49	7210											
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	151670985	151670985	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AKAP12	NM_005100	exon4	c.A1459T	p.K487X	GATGAGAAGGTGC	.	50	29	60	0	.	293	T	151670985	A	T	151670985	4	4	50	1	0	0	0	0	0	1	0	0	448	247	9	4	1498	4	AKAP12	6	151670985	Nonsense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	54424090	151670985	19444082	50	7211											
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	69364274	69364274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AUTS2	NM_001127231	exon2	c.A312C	p.K104N	ACAGAAAGATGTA	.	168	30	167	1	.	92	C	69364274	A	C	69364274	3	2	50	1	0	0	0	0	1	0	0	0	1225	69	3	5	318	5	AUTS2	7	69364274	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10		69364274	89774389	51	7212											
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73944105	73944105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	GTF2IRD1,NS,carcinoma,0	GTF2IRD1	NM_001199207	exon9	c.C1228T	p.R410W	CCCTACCGGAAGA	.	121	27	91	0	.	94	T	73944105	C	T	73944105	3	4	50	1	0	0	0	0	1	0	0	0	6868	643	23	1	1162	1	GTF2IRD1	7	73944105	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	4579831	73944105	85194558	52	7213											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	88964869	88964869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF804B	NM_181646	exon4	c.C2573A	p.S858X	CTTACTCAATAGA	.	152	21	130	0	.	101	A	88964869	C	A	88964869	4	1	50	1	0	0	0	0	0	1	0	0	18168	838	29	3	2587	3	ZNF804B	7	88964869	Nonsense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	15020764	88964869	70173794	53	7214											
SERPINE1	5054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100771835	100771835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPINE1	NM_000602	exon2	c.A161G	p.N54S	ACCGCAACGTGGT	.	125	13	100	0	.	652	G	100771835	A	G	100771835	3	3	50	1	0	0	0	0	1	0	0	0	14111	43	2	2	163	2	SERPINE1	7	100771835	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	11806966	100771835	58366828	54	7215											
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105278897	105278897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATXN7L1	NM_020725	exon7	c.G1105A	p.A369T	CCTGTGCCGGCCC	.	350	125	288	1	.	90	T	105278897	C	T	105278897	3	4	50	1	0	0	0	0	1	0	0	0	1216	739	26	3	1507	3	ATXN7L1	7	105278897	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	4507062	105278897	53859766	55	7216											
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150883617	150883617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ASB10	NM_001142459	exon2	c.G446A	p.R149H	GCGGTGCGGCCCC	.	59	10	58	0	.	226	T	150883617	C	T	150883617	3	4	50	1	0	0	0	0	1	0	0	0	1014	768	27	1	973	1	ASB10	7	150883617	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	45604720	150883617	8255046	56	7217											
ACTR3B	57180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	152549222	152549222	+	Silent	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACTR3B	NM_020445	exon10	c.C963G	p.L321L	CGTACTCTCAGGA	.	225	62	217	0	.	514	G	152549222	C	G	152549222	2	3	50	1	0	0	0	0	0	0	0	1	213	900	32	4		4	ACTR3B	7	152549222	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	1665605	152549222	6589441	57	7218											
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155556582	155556582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RBM33	NM_053043	exon15	c.A3056T	p.Q1019L	GACCACAGCCTGC	.	106	26	101	0	.	23	T	155556582	A	T	155556582	3	4	50	1	0	0	0	0	1	0	0	0	13130	188	7	4	3114	4	RBM33	7	155556582	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	3007360	155556582	3582081	58	7219											
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2836265	2836265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CSMD1	NM_033225	exon55	c.A8435G	p.N2812S	GGGAAGTTCTGTT	.	39	4	91	0	.	86	C	2836265	T	C	2836265	3	2	50	1	0	0	0	0	1	0	0	0	3944	1725	60	2	2323	2	CSMD1	8	2836265	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10		2836265	143527757	59	7220											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77765482	77765482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZFHX4	NM_024721	exon10	c.C6325T	p.L2109F	GCAGACCTCACCC	.	158	37	135	0	.	98	T	77765482	C	T	77765482	3	4	50	1	0	0	0	0	1	0	0	0	17632	681	24	3	6359	3	ZFHX4	8	77765482	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	74929217	77765482	68598540	60	7221											
NEK6	10783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127074912	127074912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEK6	NM_001166171	exon4	c.C317T	p.A106V	CAGTGGCTCTGAA	.	26	6	49	0	.	334	T	127074912	C	T	127074912	3	4	50	1	0	0	0	0	1	0	0	0	10328	797	28	3	406	3	NEK6	9	127074912	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10		127074912	14138519	61	7222											
MAMDC4	158056	ucsc.edu;bcgsc.ca	37	9	139755018	139755018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAMDC4	NM_206920	exon27	c.G3377C	p.G1126A	AGGATGGTGTCAC	.	45	4	64	0	.	156	C	139755018	G	C	139755018	3	2	50	1	0	0	0	0	1	0	0	0	9204	1261	44	4	3483	4	MAMDC4	9	139755018	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	12680106	139755018	1458413	62	7223											
JMJD1C	221037	ucsc.edu;bcgsc.ca	37	10	64967085	64967085	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	JMJD1C	NM_032776	exon10	c.C4344T	p.C1448C	GACCTTGCATTCT	.	34	4	45	0	.	275	A	64967085	G	A	64967085	2	1	50	1	0	0	0	0	0	0	0	1	7950	1311	46	3		3	JMJD1C	10	64967085	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		64967085	70567662	63	7224											
RPP30	10556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92638835	92638835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RPP30	NM_006413	exon5	c.A286G	p.R96G	TCTTCAAGGGCCC	.	81	21	129	0	.	226	G	92638835	A	G	92638835	3	3	50	1	0	0	0	0	1	0	0	0	13612	63	3	2	304	2	RPP30	10	92638835	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	27671750	92638835	42895912	64	7225											
TDRD1	56165	broad.mit.edu;bcgsc.ca	37	10	115963274	115963274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TDRD1	NM_198795	exon8	c.A929G	p.D310G	AAAAAGACTATAT	.	109	5	99	0	.	90	G	115963274	A	G	115963274	3	3	50	1	0	0	0	0	1	0	0	0	15727	275	10	2	955	2	TDRD1	10	115963274	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	23324439	115963274	19571473	65	7226											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124329720	124329720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DMBT1	NM_007329	exon3	c.C134T	p.A45V	CTGTAGCAGAAGG	.	175	47	173	0	.	494	T	124329720	C	T	124329720	3	4	50	1	0	0	0	0	1	0	0	0	4577	710	25	3	144	3	DMBT1	10	124329720	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	8366446	124329720	11205027	66	7227											
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4567048	4567048	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR52M1	NM_001004137	exon1	c.T628C	p.L210L	CTGGTGTTGATCC	.	374	78	324	0	.	68	C	4567048	T	C	4567048	2	2	50	1	0	0	0	0	0	0	0	1	11126	1722	60	2		2	OR52M1	11	4567048	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10		4567048	130439468	67	7228											
OR51G1	79324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4945133	4945133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR51G1	NM_001005237	exon1	c.T437C	p.M146T	AGCCCCATCTTGA	.	50	10	44	0	.	70	G	4945133	A	G	4945133	3	3	50	1	0	0	0	0	1	0	0	0	11098	217	8	2	530	2	OR51G1	11	4945133	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	378085	4945133	130061383	68	7229											
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22398984	22398984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC17A6	NM_020346	exon12	c.G1447A	p.A483T	CTGATCGCTGCCC	.	319	62	342	0	.	580	A	22398984	G	A	22398984	3	1	50	1	0	0	0	0	1	0	0	0	14421	1087	38	1	1493	1	SLC17A6	11	22398984	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	17453851	22398984	112607532	69	7230											
ACCS	84680	hgsc.bcm.edu;bcgsc.ca	37	11	44089261	44089262	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACCS	NM_032592	exon2	c.84_85insG	p.H28fs	TAGCCATGGGGAA	.	143	16	165	0	.	155	G	44089262	-	G	44089261	7	5	50	1	0	1	1	0	0	0	0	0	133	1461	51	0	86	0	ACCS	11	44089261	Frame_Shift_Ins	INS	-	TCGA-DD-A118-01A-11D-A12Z-10	21690277	44089261	90917255	70	7231											
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466174	57466174	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZDHHC5	NM_015457	exon11	c.C1266T	p.S422S	ACTATCCAGTGGC	.	117	19	111	0	.	226	T	57466174	C	T	57466174	2	4	50	1	0	0	0	0	0	0	0	1	17615	581	21	3		3	ZDHHC5	11	57466174	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	13376913	57466174	77540342	71	7232											
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76371941	76371941	+	Silent	SNP	G	G	T	rs180783243	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRRC32	NM_005512	exon3	c.C696A	p.A232A	CTGAAAGGCCTCG	.	80	20	85	0	G|0.999;C|0.001	90	T	76371941	G	T	76371941	2	4	50	1	0	0	0	0	0	0	0	1	8987	987	35	3		3	LRRC32	11	76371941	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	18905767	76371941	58634575	72	7233											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108218075	108218075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATM	NM_000051	exon59	c.T8654A	p.L2885H	CAGAACTTGTACA	.	257	125	247	0	.	3419	A	108218075	T	A	108218075	3	1	50	1	0	0	0	0	1	0	0	0	1109	1609	56	4	8884	4	ATM	11	108218075	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	31846134	108218075	26788441	73	7234											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2788717	2788717	+	Silent	SNP	G	G	A	rs200638007		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	Q6YL47_HUMAN,NS,carcinoma,0	CACNA1C	NM_199460	exon44	c.G5343A	p.A1781A	CAAGGCGGGCAGC	.	74	19	51	0	G|0.999;A|0.001	34	A	2788717	G	A	2788717	2	1	50	1	0	0	0	0	0	0	0	1	2540	1103	39	1		1	CACNA1C	12	2788717	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		2788717	131063178	74	7235											
C1S	716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7169973	7169973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1S	NM_201442	exon3	c.A200C	p.Y67S	GTGCGTATGACTC	.	97	23	92	1	.	91	C	7169973	A	C	7169973	3	2	50	1	0	0	0	0	1	0	0	0	1974	449	16	5	206	5	C1S	12	7169973	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	4381256	7169973	126681922	75	7236											
CD163L1	283316	hgsc.bcm.edu;bcgsc.ca	37	12	7556293	7556293	+	Missense_Mutation	SNP	C	C	T	rs151328196	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD163L1	NM_174941	exon6	c.G1246A	p.V416I	CAAAGACGCTGAA	.	131	9	156	0	C|0.999;T|0.001	100	T	7556293	C	T	7556293	3	4	50	1	0	0	0	0	1	0	0	0	2968	536	19	1	3171	1	CD163L1	12	7556293	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	386320	7556293	126295602	76	7237											
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51773444	51773444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GALNT6	NM_007210	exon3	c.C122T	p.P41L	AGCCACGGCTTCT	.	96	23	95	1	.	92	A	51773444	G	A	51773444	3	1	50	1	0	0	0	0	1	0	0	0	6217	1116	39	1	1786	1	GALNT6	12	51773444	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	44217151	51773444	82078451	77	7238											
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56487230	56487230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ERBB3	NM_001982	exon12	c.A1376G	p.N459S	GTGCCAATAGGCA	.	94	24	142	0	.	1403	G	56487230	A	G	56487230	3	3	50	1	0	0	0	0	1	0	0	0	5208	101	4	2	1553	2	ERBB3	12	56487230	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	4713786	56487230	77364665	78	7239											
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	77203532	77203532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_015336	exon5	c.T438C	p.Y146Y	GAAATATGGTGCA	.	90	26	71	0	.	.	C	77203532	T	C	77203532	2	2	50	1	0	0	0	0	0	0	0	1	17604	1471	51	2		2	ZDHHC17	12	77203532	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	20716302	77203532	56648363	79	7240											
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	89743032	89743032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DUSP6	NM_001946	exon3	c.G1145T	p.X382L	GTCTTTCACGTAG	.	80	20	83	0	.	846	A	89743032	C	A	89743032	3	1	50	1	0	0	0	0	1	0	0	0	4829	837	29	3	4	3	DUSP6	12	89743032	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	12539500	89743032	44108863	80	7241											
OAS1	4938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	113344971	113344971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OAS1	NM_001032409	exon1	c.G127T	p.E43X	CTGAAGGAAAGGT	.	305	92	332	0	.	70	T	113344971	G	T	113344971	4	4	50	1	0	0	0	0	0	1	0	0	10799	1175	41	3	129	3	OAS1	12	113344971	Nonsense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	23601939	113344971	20506924	81	7242											
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130830386	130830386	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PIWIL1	NM_004764	exon4	c.A279G	p.T93T	GAATACAAGGCAG	.	161	28	153	0	.	92	G	130830386	A	G	130830386	2	3	50	1	0	0	0	0	0	0	0	1	11957	117	5	2		2	PIWIL1	12	130830386	Silent	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	17485415	130830386	3021509	82	7243											
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133240672	133240672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	POLE	NM_006231	exon23	c.A2624C	p.N875T	ACAAAATTTTCTG	.	214	59	244	0	.	233	G	133240672	T	G	133240672	3	3	50	1	0	0	0	0	1	0	0	0	12196	1493	52	5	4344	5	POLE	12	133240672	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	2410286	133240672	611223	83	7244											
PCDH8	5100	ucsc.edu;bcgsc.ca	37	13	53422356	53422356	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDH8	NM_032949	exon1	c.T216C	p.S72S	GAGCAGAGAGCTG	.	41	5	33	0	.	153	G	53422356	A	G	53422356	2	3	50	1	0	0	0	0	0	0	0	1	11517	291	11	2		2	PCDH8	13	53422356	Silent	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10		53422356	61747522	84	7245											
REC8	9985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24646590	24646590	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	REC8	NM_005132	exon10	c.734+1G>T	.	TGCAGAGTAAGGG	.	220	51	249	0	.	90	T	24646590	G	T	24646590	5	4	50	1	0	0	0	0	0	0	1	0	13199	1043	36	3	769	3	REC8	14	24646590	Splice_Site	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		24646590	82702950	85	7246											
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24845640	24845640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFATC4	NM_001198967	exon10	c.G2386A	p.E796K	GCTTGCGAAACTC	.	108	23	147	0	.	92	A	24845640	G	A	24845640	3	1	50	1	0	0	0	0	1	0	0	0	10365	1059	37	1	2424	1	NFATC4	14	24845640	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	199050	24845640	82503900	86	7247											
DLGAP5	9787	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55618447	55618447	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DLGAP5	NM_014750	exon17	c.C2334A	p.I778I	TTCTAAGATGCTA	.	166	53	218	1	.	92	T	55618447	G	T	55618447	2	4	50	1	0	0	0	0	0	0	0	1	4563	932	33	3		3	DLGAP5	14	55618447	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	30772807	55618447	51731093	87	7248											
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60945061	60945061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C14orf39	NM_174978	exon5	c.C280G	p.Q94E	GGTCCTGCATATA	.	252	63	311	0	.	94	C	60945061	G	C	60945061	3	2	50	1	0	0	0	0	1	0	0	0	1772	1328	46	4	1539	4	C14orf39	14	60945061	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	5326614	60945061	46404479	88	7249											
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75136704	75136704	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA0317	NM_001039479	exon14	c.T1734C	p.A578A	GAAGCGAGCTCGG	.	52	5	72	0	.	525	G	75136704	A	G	75136704	2	3	50	1	0	0	0	0	0	0	0	1	8167	291	11	2		2	KIAA0317	14	75136704	Silent	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	14191643	75136704	32212836	89	7250											
BNIP2	663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59972472	59972472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BNIP2	NM_004330	exon3	c.T449C	p.I150T	GCTAGTATATCTG	.	49	28	56	0	.	228	G	59972472	A	G	59972472	3	3	50	1	0	0	0	0	1	0	0	0	1477	449	16	2	890	2	BNIP2	15	59972472	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10		59972472	42558920	90	7251											
NEO1	4756	broad.mit.edu;bcgsc.ca	37	15	73558728	73558728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEO1	NM_001172623	exon16	c.A2470G	p.S824G	TATGAGAGTGCTG	.	124	6	141	0	.	116	G	73558728	A	G	73558728	3	3	50	1	0	0	0	0	1	0	0	0	10336	304	11	2	2532	2	NEO1	15	73558728	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	13586256	73558728	28972664	91	7252											
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85660890	85660890	+	Silent	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PDE8A	NM_002605	exon17	c.T1554A	p.G518G	TCTTGGTCTCAAA	.	406	92	343	0	.	94	A	85660890	T	A	85660890	2	1	50	1	0	0	0	0	0	0	0	1	11653	1654	58	4		4	PDE8A	15	85660890	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	12102162	85660890	16870502	92	7253											
IQGAP1	8826	broad.mit.edu;bcgsc.ca	37	15	91020963	91020963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IQGAP1	NM_003870	exon26	c.T3171C	p.S1057S	TGTAAGTTTCAAC	.	93	5	94	0	.	950	C	91020963	T	C	91020963	2	2	50	1	0	0	0	0	0	0	0	1	7814	1722	60	2		2	IQGAP1	15	91020963	Silent	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	5360073	91020963	11510429	93	7254											
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57734093	57734093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCDC135	NM_032269	exon4	c.C415A	p.P139T	CTGATGCCCTACC	.	104	17	119	0	.	90	A	57734093	C	A	57734093	3	1	50	1	0	0	0	0	1	0	0	0	2769	739	26	3	425	3	CCDC135	16	57734093	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10		57734093	32620660	94	7255											
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	58079051	58079051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MMP15	NM_002428	exon10	c.G1711A	p.D571N	TGGCCCGACGTGG	.	70	32	28	0	.	713	A	58079051	G	A	58079051	3	1	50	1	0	0	0	0	1	0	0	0	9654	1058	37	1	1749	1	MMP15	16	58079051	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	344958	58079051	32275702	95	7256											
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77896666	77896666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VAT1L	NM_020927	exon4	c.T601A	p.C201S	CAGCTGTGTTCCA	.	137	39	133	0	.	90	A	77896666	T	A	77896666	3	1	50	1	0	0	0	0	1	0	0	0	17127	1696	59	4	615	4	VAT1L	16	77896666	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	19817615	77896666	12458087	96	7257											
MYOCD	93649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12626295	12626295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYOCD	NM_001146312	exon5	c.G385T	p.V129L	CTTCCTGTGGATT	.	112	42	145	1	.	93	T	12626295	G	T	12626295	3	4	50	1	0	0	0	0	1	0	0	0	10087	1377	48	3	403	3	MYOCD	17	12626295	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		12626295	68568915	97	7258											
SREBF1	6720	broad.mit.edu;bcgsc.ca	37	17	17718247	17718247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SREBF1	NM_001005291	exon15	c.A2594G	p.D865G	AGGGCATCCGAGA	.	83	6	96	0	.	91	C	17718247	T	C	17718247	3	2	50	1	0	0	0	0	1	0	0	0	15140	1435	50	2	963	2	SREBF1	17	17718247	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	5091952	17718247	63476963	98	7259											
B9D1	27077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19261177	19261177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	B9D1	NM_015681	exon3	c.T220A	p.F74I	TTTTAAAGGTGAC	.	60	24	83	0	.	68	T	19261177	A	T	19261177	3	4	50	1	0	0	0	0	1	0	0	0	1277	72	3	4	414	4	B9D1	17	19261177	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	1542930	19261177	61934033	99	7260											
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26088234	26088234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOS2	NM_000625	exon23	c.G2824A	p.G942S	AGACGCCGTGGTG	.	133	38	182	0	.	156	T	26088234	C	T	26088234	3	4	50	1	0	0	0	0	1	0	0	0	10543	652	23	1	657	1	NOS2	17	26088234	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	6827057	26088234	55106976	100	7261											
CPD	1362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28772898	28772898	+	Silent	SNP	G	G	T	rs187666987	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CPD	NM_001304	exon12	c.G2733T	p.A911A	TTCAGCGGAGAAT	.	166	52	247	1	G|0.999;A|0.000	92	T	28772898	G	T	28772898	2	4	50	1	0	0	0	0	0	0	0	1	3798	1103	39	1		1	CPD	17	28772898	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	2684664	28772898	52422312	101	7262											
MAP3K14	9020	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43367973	43367973	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAP3K14	.	.	.	.	GGCTCTTCTCCAC	.	281	55	322	0	.	1453	C	43367973	T	C	43367973	1	2	50	0	1	0	0	0	0	0	0	0	9248	1792	62	2		2	MAP3K14	17	43367973	RNA	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	14595075	43367973	37827237	102	7263											
NFE2L1	4779	hgsc.bcm.edu;bcgsc.ca	37	17	46128958	46128959	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFE2L1	NM_003204	exon2	c.478_479insC	p.A160fs	GCTGTAGCCCCCC	.	63	19	65	0	.	91	C	46128959	-	C	46128958	7	5	50	1	0	1	1	0	0	0	0	0	10367	971	34	0	480	0	NFE2L1	17	46128958	Frame_Shift_Ins	INS	-	TCGA-DD-A118-01A-11D-A12Z-10	2760985	46128958	35066252	103	7264											
GH1	2688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61995228	61995228	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GH1	NM_000515	exon4	c.G348A	p.V116V	GAACTGCACGGGC	.	99	28	111	0	.	522	T	61995228	C	T	61995228	2	4	50	1	0	0	0	0	0	0	0	1	6367	697	25	3		3	GH1	17	61995228	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	15866270	61995228	19199982	104	7265											
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368126	72368126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR142	NM_181790	exon4	c.C776T	p.A259V	ACACTGCCCTGTG	.	61	13	76	0	.	93	T	72368126	C	T	72368126	3	4	50	1	0	0	0	0	1	0	0	0	6650	739	26	3	790	3	GPR142	17	72368126	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	10372898	72368126	8827084	105	7266											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	34261446	34261446	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FHOD3	NM_025135	exon12	c.1358delA	p.E453fs	ACCAAGAGTCACT	.	253	139	366	0	.	139	-	34261446	A	-	34261446	7	5	50	1	0	1	0	1	0	0	0	0	5883	304	11	0	1404	0	FHOD3	18	34261446	Frame_Shift_Del	DEL	A	TCGA-DD-A118-01A-11D-A12Z-10		34261446	43815802	106	7267											
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1109390	1109390	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_014963	exon29	c.G3249A	p.A1083A	CTGCTCCGCCAGC	.	27	13	12	0	.	.	T	1109390	C	T	1109390	2	4	50	1	0	0	0	0	0	0	0	1	13863	639	23	1		1	SBNO2	19	1109390	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10		1109390	58019593	107	7268											
GNA15	2769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3162793	3162793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GNA15	NM_002068	exon7	c.C901T	p.P301S	CCAGGCCCTAAGC	.	42	11	54	0	.	229	T	3162793	C	T	3162793	3	4	50	1	0	0	0	0	1	0	0	0	6503	623	22	3	927	3	GNA15	19	3162793	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	2053403	3162793	55966190	108	7269											
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7516109	7516109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGEF18	NM_001130955	exon6	c.C1248T	p.T416T	CATAACCAAATAC	.	130	25	107	0	.	228	T	7516109	C	T	7516109	2	4	50	1	0	0	0	0	0	0	0	1	901	581	21	3		3	ARHGEF18	19	7516109	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	4353316	7516109	51612874	109	7270											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087246	9087246	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MUC16	NM_024690	exon1	c.C4569A	p.I1523I	ACTCCTGATTCCT	.	298	54	210	0	.	566	T	9087246	G	T	9087246	2	4	50	1	0	0	0	0	0	0	0	1	9973	1280	45	3		3	MUC16	19	9087246	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	1571137	9087246	50041737	110	7271											
DNASE2	1777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12987092	12987092	+	Silent	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNASE2	NM_001375	exon6	c.T795G	p.S265S	GCAGTTAGAGGGC	.	135	21	121	0	.	90	C	12987092	A	C	12987092	2	2	50	1	0	0	0	0	0	0	0	1	4664	407	15	5		5	DNASE2	19	12987092	Silent	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	3899846	12987092	46141891	111	7272											
DNASE2	1777	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	12991796	12991796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNASE2	NM_001375	exon2	c.A257G	p.N86S	CTGGTGTTGCTCC	.	82	16	91	0	.	90	C	12991796	T	C	12991796	3	2	50	1	0	0	0	0	1	0	0	0	4664	1725	60	2	845	2	DNASE2	19	12991796	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	4704	12991796	46137187	112	7273											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	22155549	22155549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF208	NM_007153	exon4	c.A2287G	p.T763A	TAAGGGTTGAGGA	.	46	16	47	0	.	7	C	22155549	T	C	22155549	3	2	50	1	0	0	0	0	1	0	0	0	17763	1725	60	2	1559	2	ZNF208	19	22155549	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	9163753	22155549	36973434	113	7274											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156821	22156821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF208	NM_007153	exon4	c.A1015G	p.K339E	AGGGCTTCTCTCC	.	131	24	96	0	.	7	C	22156821	T	C	22156821	3	2	50	1	0	0	0	0	1	0	0	0	17763	1792	62	2	2831	2	ZNF208	19	22156821	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	1272	22156821	36972162	114	7275											
ZNF540	163255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38102620	38102620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF540	NM_152606	exon5	c.A439G	p.K147E	GTCTCTAAAAAAA	.	183	73	168	0	.	153	G	38102620	A	G	38102620	3	3	50	1	0	0	0	0	1	0	0	0	17972	363	13	2	453	2	ZNF540	19	38102620	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	15945799	38102620	21026363	115	7276											
CEACAM16	388551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45206800	45206800	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CEACAM16	NM_001039213	exon3	c.C219A	p.G73G	CACAGGCGATGAG	.	142	20	98	1	.	23	A	45206800	C	A	45206800	2	1	50	1	0	0	0	0	0	0	0	1	3188	755	27	1		1	CEACAM16	19	45206800	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	7104180	45206800	13922183	116	7277											
SYMPK	8189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46319169	46319169	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SYMPK	NM_004819	exon26	c.C3627T	p.D1209D	CGAGTCGTCATCC	.	113	17	104	0	.	91	A	46319169	G	A	46319169	2	1	50	1	0	0	0	0	0	0	0	1	15436	1136	40	1		1	SYMPK	19	46319169	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	1112369	46319169	12809814	117	7278											
NFS1	9054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34286442	34286442	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFS1	NM_021100	exon2	c.G168A	p.L56L	AGGTCGCAGCACT	.	337	51	260	0	.	92	T	34286442	C	T	34286442	2	4	50	1	0	0	0	0	0	0	0	1	10385	697	25	3		3	NFS1	20	34286442	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10		34286442	28739078	118	7279											
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	213	35	163	0	C|1.000	4767	T	57484420	C	T	57484420	3	4	50	1	0	0	0	0	1	0	0	0	6510	652	23	1	3448	1	GNAS	20	57484420	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	23197978	57484420	5541100	119	7280											
CDH26	60437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58564047	58564047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDH26	NM_177980	exon9	c.T1112A	p.L371H	GAAAGCTTCAGCC	.	108	17	72	0	.	93	A	58564047	T	A	58564047	3	1	50	1	0	0	0	0	1	0	0	0	3110	1609	56	4	1146	4	CDH26	20	58564047	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	1079627	58564047	4461473	120	7281											
TUBA8	51807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18604433	18604433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TUBA8	NM_018943	exon2	c.G191A	p.R64Q	TGCCCCGGGCCGT	.	203	80	189	1	.	90	A	18604433	G	A	18604433	3	1	50	1	0	0	0	0	1	0	0	0	16747	1116	39	1	197	1	TUBA8	22	18604433	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		18604433	32700133	121	7282											
CDC45	8318	broad.mit.edu;bcgsc.ca	37	22	19471437	19471437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDC45	NM_003504	exon5	c.A395G	p.D132G	ATGAAGACATCTT	.	126	7	105	0	.	227	G	19471437	A	G	19471437	3	3	50	1	0	0	0	0	1	0	0	0	3081	275	10	2	413	2	CDC45	22	19471437	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	867004	19471437	31833129	122	7283											
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21133628	21133628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPIND1	NM_000185	exon2	c.A28G	p.I10V	CTTCTCATTTTCC	.	36	5	46	0	.	414	G	21133628	A	G	21133628	3	3	50	1	0	0	0	0	1	0	0	0	14110	217	8	2	30	2	SERPIND1	22	21133628	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	1662191	21133628	30170938	123	7284											
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26695027	26695027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SEZ6L	NM_021115	exon5	c.G1240A	p.V414M	GGTGGGGTGGCCC	.	142	25	95	0	.	95	A	26695027	G	A	26695027	3	1	50	1	0	0	0	0	1	0	0	0	14143	1261	44	3	1258	3	SEZ6L	22	26695027	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	5561399	26695027	24609539	124	7285											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30415674	30415674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MTMR3	NM_153050	exon17	c.G2026A	p.A676T	GGGGGTGCCGAGC	.	70	18	71	0	.	292	A	30415674	G	A	30415674	3	1	50	1	0	0	0	0	1	0	0	0	9945	1319	46	3	2084	3	MTMR3	22	30415674	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	3720647	30415674	20888892	125	7286											
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33670547	33670547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LARGE	NM_004737	exon16	c.G2137A	p.D713N	TAATGTCGAAGCT	.	187	41	148	0	.	92	T	33670547	C	T	33670547	3	4	50	1	0	0	0	0	1	0	0	0	8627	884	31	1	137	1	LARGE	22	33670547	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	3254873	33670547	17634019	126	7287											
ZBED1	9189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	2407376	2407376	+	Missense_Mutation	SNP	G	G	A	rs199678782		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZBED1	NM_001171135	exon2	c.C1385T	p.T462M	TCGGGCGTCTCCT	.	387	84	319	0	G|0.999;A|0.001	40	A	2407376	G	A	2407376	3	1	50	1	0	0	0	0	1	0	0	0	17514	1145	40	1	703	1	ZBED1	23	2407376	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10		2407376	152863184	127	7288											
ARSD	414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2835844	2835844	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARSD	NM_001669	exon6	c.863+1G>A	.	TGCTTACCTTTCA	.	143	37	110	0	.	130	T	2835844	C	T	2835844	5	4	50	1	0	0	0	0	0	0	1	0	989	521	18	3	1094	3	ARSD	23	2835844	Splice_Site	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	428468	2835844	152434716	128	7289											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5811323	5811323	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NLGN4X	NM_181332	exon6	c.T1986C	p.T662T	GAGGACAGTTGTG	.	896	334	739	1	.	195	G	5811323	A	G	5811323	2	3	50	1	0	0	0	0	0	0	0	1	10464	175	7	2		2	NLGN4X	23	5811323	Silent	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	2975479	5811323	149459237	129	7290											
ARHGAP6	395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11206890	11206890	+	Silent	SNP	C	C	T	rs151308614	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP6	NM_006125	exon4	c.G1035A	p.T345T	TGGGGACGTTGAC	.	680	124	571	0	C|0.999;T|0.001	227	T	11206890	C	T	11206890	2	4	50	1	0	0	0	0	0	0	0	1	887	523	19	1		1	ARHGAP6	23	11206890	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	5395567	11206890	144063670	130	7291											
RAB9A	9367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13727290	13727290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RAB9A	NM_004251	exon3	c.G425A	p.C142Y	CTTGGTGCAGGGA	.	102	20	83	0	.	660	A	13727290	G	A	13727290	3	1	50	1	0	0	0	0	1	0	0	0	12958	1319	46	3	427	3	RAB9A	23	13727290	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	2520400	13727290	141543270	131	7292											
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	44091923	44091923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EFHC2	NM_025184	exon10	c.G1424A	p.G475E	GCAATTCCTATAA	.	154	66	98	0	.	135	T	44091923	C	T	44091923	3	4	50	1	0	0	0	0	1	0	0	0	4947	869	30	3	849	3	EFHC2	23	44091923	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	30364633	44091923	111178637	132	7293											
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279675	53279675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IQSEC2	NM_001111125	exon5	c.G2083A	p.D695N	CGTTATCTCCACC	.	214	49	175	0	.	178	T	53279675	C	T	53279675	3	4	50	1	0	0	0	0	1	0	0	0	7818	913	32	3	2427	3	IQSEC2	23	53279675	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	9187752	53279675	101990885	133	7294											
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	64957171	64957171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MSN	NM_002444	exon10	c.C1222T	p.R408W	GCCTCCCGGGACC	.	324	46	275	0	.	1086	T	64957171	C	T	64957171	3	4	50	1	0	0	0	0	1	0	0	0	9885	643	23	1	1260	1	MSN	23	64957171	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	11677496	64957171	90313389	134	7295											
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100078295	100078295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CSTF2	NM_001325	exon4	c.G322T	p.A108S	ACTGGTGCCCCTG	.	163	25	123	0	.	131	T	100078295	G	T	100078295	3	4	50	1	0	0	0	0	1	0	0	0	3984	1319	46	3	336	3	CSTF2	23	100078295	Missense_Mutation	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	35121124	100078295	55192265	135	7296											
GPRASP1	9737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101911927	101911927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPRASP1	NM_001099411	exon3	c.C3086T	p.T1029M	GGTCCACGTGTTC	.	243	49	193	1	.	131	T	101911927	C	T	101911927	3	4	50	1	0	0	0	0	1	0	0	0	6722	536	19	1	3088	1	GPRASP1	23	101911927	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	1833632	101911927	53358633	136	7297											
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102005369	102005369	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BHLHB9	NM_001142530	exon2	c.C1446A	p.I482I	CATGATCAATATG	.	566	231	452	1	.	132	A	102005369	C	A	102005369	2	1	50	1	0	0	0	0	0	0	0	1	1420	816	29	3		3	BHLHB9	23	102005369	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	93442	102005369	53265191	137	7298											
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102842040	102842040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TCEAL4	NM_001006935	exon3	c.A437T	p.H146L	CCATACATGATAT	.	227	90	185	0	.	130	T	102842040	A	T	102842040	3	4	50	1	0	0	0	0	1	0	0	0	15670	217	8	4	439	4	TCEAL4	23	102842040	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	836671	102842040	52428520	138	7299											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117788710	117788710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOCK11	NM_144658	exon43	c.C4841T	p.T1614I	CAAGCACCCCAGA	.	267	99	240	0	.	93	T	117788710	C	T	117788710	3	4	50	1	0	0	0	0	1	0	0	0	4686	507	18	3	5011	3	DOCK11	23	117788710	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	14946670	117788710	37481850	139	7300											
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117895250	117895250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL13RA1	NM_001560	exon6	c.T826A	p.Y276N	GTTTTCTACGTAA	.	402	82	325	1	.	554	A	117895250	T	A	117895250	3	1	50	1	0	0	0	0	1	0	0	0	7629	1522	53	4	848	4	IL13RA1	23	117895250	Missense_Mutation	SNP	T	TCGA-DD-A118-01A-11D-A12Z-10	106540	117895250	37375310	140	7301											
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122538727	122538727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GRIA3	NM_000828	exon10	c.A1462G	p.K488E	GAGACTAAAATAT	.	529	102	461	0	.	134	G	122538727	A	G	122538727	3	3	50	1	0	0	0	0	1	0	0	0	6769	363	13	2	1500	2	GRIA3	23	122538727	Missense_Mutation	SNP	A	TCGA-DD-A118-01A-11D-A12Z-10	4643477	122538727	32731833	141	7302											
ZNF449	203523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134494230	134494230	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF449	NM_152695	exon5	c.G786A	p.L262L	CATTTTGCAAAAA	.	476	71	439	0	.	132	A	134494230	G	A	134494230	2	1	50	1	0	0	0	0	0	0	0	1	17917	1310	46	3		3	ZNF449	23	134494230	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	11955503	134494230	20776330	142	7303											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151806785	151806785	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GABRQ	NM_018558	exon1	c.C129T	p.V43V	CGAAGTCGTCCTG	.	254	48	188	0	.	133	T	151806785	C	T	151806785	2	4	50	1	0	0	0	0	0	0	0	1	6175	871	31	1		1	GABRQ	23	151806785	Silent	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	17312555	151806785	3463775	143	7304											
TREX2	11219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152710779	152710779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TREX2	NM_080701	exon2	c.G110A	p.R37H	GAGGAGCGGTGGA	.	177	56	115	0	.	227	T	152710779	C	T	152710779	3	4	50	1	0	0	0	0	1	0	0	0	16474	768	27	1	603	1	TREX2	23	152710779	Missense_Mutation	SNP	C	TCGA-DD-A118-01A-11D-A12Z-10	903994	152710779	2559781	144	7305											
ARHGAP4	393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153185069	153185069	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP4	NM_001164741	exon6	c.C753A	p.L251L	GTGCACGAGAAAC	.	201	29	140	0	.	227	T	153185069	G	T	153185069	2	4	50	1	0	0	0	0	0	0	0	1	885	1045	37	1		1	ARHGAP4	23	153185069	Silent	SNP	G	TCGA-DD-A118-01A-11D-A12Z-10	474290	153185069	2085491	145	7306											
KLHDC7A	127707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	18809370	18809370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHDC7A	NM_152375	exon1	c.G1895A	p.R632H	CGGTGCGTGCCAA	.	26	13	47	0	.	93	A	18809370	G	A	18809370	3	1	51	1	0	0	0	0	1	0	0	0	8360	1145	40	1	1897	1	KLHDC7A	1	18809370	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10		18809370	230441251	1	7307											
RPL11	6135	hgsc.bcm.edu;broad.mit.edu	37	1	24022368	24022368	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL11	NM_000975	exon5	c.A477G	p.K159K	CAGCAAAGAGGAG	.	74	4	119	0	.	226	G	24022368	A	G	24022368	2	3	51	1	0	0	0	0	0	0	0	1	13557	69	3	2		2	RPL11	1	24022368	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5212998	24022368	225228253	2	7308											
NUDC	10726	hgsc.bcm.edu;bcgsc.ca	37	1	27269479	27269479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDC	NM_006600	exon6	c.C664A	p.L222I	GGGGAGCTCTACA	.	72	4	110	0	.	91	A	27269479	C	A	27269479	3	1	51	1	0	0	0	0	1	0	0	0	10721	797	28	3	686	3	NUDC	1	27269479	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	3247111	27269479	221981142	3	7309											
HDAC1	3065	hgsc.bcm.edu;bcgsc.ca	37	1	32797350	32797350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HDAC1	NM_004964	exon11	c.G1162A	p.A388T	GAGGACGCCATCC	.	70	4	87	0	.	659	A	32797350	G	A	32797350	3	1	51	1	0	0	0	0	1	0	0	0	7004	1087	38	1	1204	1	HDAC1	1	32797350	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	5527871	32797350	216453271	4	7310											
KIAA0319L	79932	hgsc.bcm.edu;bcgsc.ca	37	1	35972224	35972224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0319L	NM_024874	exon3	c.G655A	p.G219S	CAGAGCCACTGGT	.	123	5	184	0	.	92	T	35972224	C	T	35972224	3	4	51	1	0	0	0	0	1	0	0	0	8169	594	21	3	2570	3	KIAA0319L	1	35972224	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	3174874	35972224	213278397	5	7311											
LEPRE1	64175	hgsc.bcm.edu;bcgsc.ca	37	1	43224582	43224582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LEPRE1	NM_001146289	exon4	c.A881G	p.K294R	AAGGGCTTCTCTC	.	70	4	102	0	.	94	C	43224582	T	C	43224582	3	2	51	1	0	0	0	0	1	0	0	0	8729	1609	56	2	1396	2	LEPRE1	1	43224582	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	7252358	43224582	206026039	6	7312											
CCDC24	149473	hgsc.bcm.edu;bcgsc.ca	37	1	44461509	44461509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC24	NM_152499	exon8	c.T682C	p.C228R	CCTTCTTGTGTCT	.	86	4	116	0	.	90	C	44461509	T	C	44461509	3	2	51	1	0	0	0	0	1	0	0	0	2799	1812	63	2	708	2	CCDC24	1	44461509	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1236927	44461509	204789112	7	7313											
CYB5RL	606495	hgsc.bcm.edu;bcgsc.ca	37	1	54640392	54640392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001031672	exon8	c.A848G	p.K283R	AATGGCTTTCTCC	.	41	4	62	0	.	.	C	54640392	T	C	54640392	3	2	51	1	0	0	0	0	1	0	0	0	4130	1609	56	2	103	2	CYB5RL	1	54640392	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	10178883	54640392	194610229	8	7314											
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62739084	62739084	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KANK4	NM_181712	exon3	c.G1692T	p.V564V	CTTCTTCACATAC	.	151	22	251	0	.	74	A	62739084	C	A	62739084	2	1	51	1	0	0	0	0	0	0	0	1	7979	813	29	3		3	KANK4	1	62739084	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	8098692	62739084	186511537	9	7315											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62995054	62995054	+	Silent	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DOCK7	NM_001271999	exon30	c.A3675C	p.S1225S	CGGGTCTGAGTCG	.	119	12	161	0	.	92	G	62995054	T	G	62995054	2	3	51	1	0	0	0	0	0	0	0	1	4692	1567	55	5		5	DOCK7	1	62995054	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	255970	62995054	186255567	10	7316											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65307245	65307245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK1	NM_002227	exon18	c.C2443T	p.P815S	ATGATGGTGTCAC	.	148	45	177	0	.	3900	A	65307245	G	A	65307245	3	1	51	1	0	0	0	0	1	0	0	0	7937	1261	44	3	1053	3	JAK1	1	65307245	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	2312191	65307245	183943376	11	7317											
WDR78	79819	broad.mit.edu;bcgsc.ca	37	1	67306354	67306354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR78	NM_207014	exon9	c.A1292G	p.E431G	TCAGGTTCTAAAG	.	93	5	151	0	.	92	C	67306354	T	C	67306354	3	2	51	1	0	0	0	0	1	0	0	0	17325	1797	62	2	1347	2	WDR78	1	67306354	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1999109	67306354	181944267	12	7318											
ELTD1	64123	hgsc.bcm.edu;bcgsc.ca	37	1	79385900	79385900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ELTD1	NM_022159	exon10	c.T1429C	p.F477L	CAAGAAAAACAAG	.	75	4	91	0	.	24	G	79385900	A	G	79385900	3	3	51	1	0	0	0	0	1	0	0	0	5084	14	1	2	667	2	ELTD1	1	79385900	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	12079546	79385900	169864721	13	7319											
AKNAD1	254268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109394791	109394791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKNAD1	NM_152763	exon2	c.C496T	p.P166S	GTTCTGGGGTTTG	.	294	14	412	0	.	93	A	109394791	G	A	109394791	3	1	51	1	0	0	0	0	1	0	0	0	464	1232	43	3	2074	3	AKNAD1	1	109394791	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	30008891	109394791	139855830	14	7320											
TDRKH	11022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151751633	151751633	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TDRKH	NM_001083965	exon5	c.A507G	p.L169L	TGATAGTAGTAAT	.	506	76	399	0	.	92	C	151751633	T	C	151751633	2	2	51	1	0	0	0	0	0	0	0	1	15734	1625	57	2		2	TDRKH	1	151751633	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	42356842	151751633	97498988	15	7321											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650005	232650005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIPA1L2	NM_020808	exon1	c.G1081T	p.A361S	CAGATGCCCCAGT	.	70	48	61	0	.	95	A	232650005	C	A	232650005	3	1	51	1	0	0	0	0	1	0	0	0	14330	739	26	3	4171	3	SIPA1L2	1	232650005	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	80898372	232650005	16600616	16	7322											
OR2W5	441932	broad.mit.edu;bcgsc.ca	37	1	247654704	247654704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR2W5	NM_001004698	exon1	c.T275A	p.I92N	AGACCATCACCTA	.	158	13	117	1	.	115	A	247654704	T	A	247654704	3	1	51	1	0	0	0	0	1	0	0	0	11034	1435	50	4	277	4	OR2W5	1	247654704	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	15004699	247654704	1595917	17	7323											
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	249106273	249106273	+	Silent	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SH3BP5L	NM_030645	exon7	c.G1008C	p.L336L	CAGGCTCAGCAGA	.	83	12	63	0	.	90	G	249106273	C	G	249106273	2	3	51	1	0	0	0	0	0	0	0	1	14248	813	29	4		4	SH3BP5L	1	249106273	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	1451569	249106273	144348	18	7324											
PXDN	7837	hgsc.bcm.edu;bcgsc.ca	37	2	1664712	1664712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PXDN	NM_012293	exon14	c.A1778G	p.E593G	ACACACTCATAGC	.	75	4	78	0	.	166	C	1664712	T	C	1664712	3	2	51	1	0	0	0	0	1	0	0	0	12847	1551	54	2	2701	2	PXDN	2	1664712	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		1664712	241534661	19	7325											
SMC6	79677	hgsc.bcm.edu;bcgsc.ca	37	2	17922879	17922879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMC6	NM_001142286	exon4	c.A238G	p.S80G	ACTTACTTCCATT	.	60	4	79	0	.	292	C	17922879	T	C	17922879	3	2	51	1	0	0	0	0	1	0	0	0	14787	1623	56	2	3137	2	SMC6	2	17922879	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	16258167	17922879	225276494	20	7326											
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25965337	25965337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASXL2	NM_018263	exon12	c.G3869C	p.S1290T	GTAGAACTGAAAA	.	138	10	187	0	.	23	G	25965337	C	G	25965337	3	3	51	1	0	0	0	0	1	0	0	0	1067	565	20	4	442	4	ASXL2	2	25965337	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	8042458	25965337	217234036	21	7327											
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27802654	27802654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.T3215C	p.L1072P	ATTATCTTTCCCA	.	108	5	142	0	.	67	C	27802654	T	C	27802654	3	2	51	1	0	0	0	0	1	0	0	0	2157	1609	56	2	3217	2	C2orf16	2	27802654	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1837317	27802654	215396719	22	7328											
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27803186	27803186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.A3747G	p.R1249R	AACTAGAGCACCT	.	116	5	161	0	.	67	G	27803186	A	G	27803186	2	3	51	1	0	0	0	0	0	0	0	1	2157	301	11	2		2	C2orf16	2	27803186	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	532	27803186	215396187	23	7329											
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32399138	32399138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC30A6	NM_001193513	exon3	c.A97G	p.K33E	TCCTGGAAGATAC	.	271	103	367	0	.	90	G	32399138	A	G	32399138	3	3	51	1	0	0	0	0	1	0	0	0	14559	247	9	2	107	2	SLC30A6	2	32399138	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	4595952	32399138	210800235	24	7330											
NRXN1	9378	hgsc.bcm.edu;bcgsc.ca	37	2	51254792	51254792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NRXN1	NM_004801	exon2	c.A620G	p.E207G	GGCGGCTCATCGT	.	114	5	119	0	.	92	C	51254792	T	C	51254792	3	2	51	1	0	0	0	0	1	0	0	0	10665	1551	54	2	4378	2	NRXN1	2	51254792	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	18855654	51254792	191944581	25	7331											
SERTAD2	9792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	64863856	64863856	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERTAD2	NM_014755	exon2	c.C150T	p.N50N	CCTGTGGTTATAG	.	220	21	237	0	.	90	A	64863856	G	A	64863856	2	1	51	1	0	0	0	0	0	0	0	1	14121	1252	44	3		3	SERTAD2	2	64863856	Silent	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	13609064	64863856	178335517	26	7332											
CLASP1	23332	hgsc.bcm.edu;bcgsc.ca	37	2	122205082	122205082	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLASP1	NM_001207051	exon19	c.T1743C	p.A581A	TGTAGAAGCTTTA	.	83	4	109	0	.	91	G	122205082	A	G	122205082	2	3	51	1	0	0	0	0	0	0	0	1	3454	86	3	2		2	CLASP1	2	122205082	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	57341226	122205082	120994291	27	7333											
ZEB2	9839	hgsc.bcm.edu;bcgsc.ca	37	2	145162558	145162558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZEB2	NM_014795	exon5	c.A437G	p.E146G	AAGTATTCCTCAA	.	95	4	95	0	.	297	C	145162558	T	C	145162558	3	2	51	1	0	0	0	0	1	0	0	0	17621	1783	62	2	3231	2	ZEB2	2	145162558	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	22957476	145162558	98036815	28	7334											
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164467698	164467698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIGN	NM_018086	exon3	c.A644G	p.H215R	GAGCTATGCAAAG	.	178	50	193	1	.	156	C	164467698	T	C	164467698	3	2	51	1	0	0	0	0	1	0	0	0	5891	1464	51	2	1639	2	FIGN	2	164467698	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	19305140	164467698	78731675	29	7335											
SP3	6670	hgsc.bcm.edu;bcgsc.ca	37	2	174820457	174820457	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SP3	NM_003111	exon4	c.A783G	p.P261P	ATTTCCTGGCAGA	.	71	4	90	0	.	227	C	174820457	T	C	174820457	2	2	51	1	0	0	0	0	0	0	0	1	14965	1567	55	2		2	SP3	2	174820457	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	10352759	174820457	68378916	30	7336											
RQCD1	9125	hgsc.bcm.edu;bcgsc.ca	37	2	219447748	219447748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RQCD1	NM_001271634	exon3	c.T259C	p.S87P	CACCAGTCTAACA	.	95	4	130	0	.	92	C	219447748	T	C	219447748	3	2	51	1	0	0	0	0	1	0	0	0	13670	1667	58	2	269	2	RQCD1	2	219447748	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	44627291	219447748	23751625	31	7337											
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231973880	231973880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HTR2B	NM_000867	exon4	c.C797T	p.T266I	AAAACTGTAGACA	.	147	57	248	0	.	90	A	231973880	G	A	231973880	3	1	51	1	0	0	0	0	1	0	0	0	7442	1377	48	3	652	3	HTR2B	2	231973880	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	12526132	231973880	11225493	32	7338											
SEPT2	4735	hgsc.bcm.edu;bcgsc.ca	37	2	242287583	242287583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPT2	NM_001008491	exon12	c.A961G	p.I321V	GACCAGATCTTGC	.	100	4	160	0	.	68	G	242287583	A	G	242287583	3	3	51	1	0	0	0	0	1	0	0	0	14064	333	12	2	999	2	SEPT2	2	242287583	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	10313703	242287583	911790	33	7339											
LRRC3B	116135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	26751740	26751740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC3B	NM_052953	exon2	c.G577T	p.D193Y	GACGCTGACCTTT	.	146	10	197	0	.	94	T	26751740	G	T	26751740	3	4	51	1	0	0	0	0	1	0	0	0	8996	1290	45	3	579	3	LRRC3B	3	26751740	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10		26751740	171270690	34	7340											
ZNF860	344787	hgsc.bcm.edu;bcgsc.ca	37	3	32032133	32032133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF860	NM_001137674	exon2	c.A1562G	p.Q521R	TTAATCAACAAGC	.	107	5	141	0	.	1	G	32032133	A	G	32032133	3	3	51	1	0	0	0	0	1	0	0	0	18191	130	5	2	1564	2	ZNF860	3	32032133	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5280393	32032133	165990297	35	7341											
EXOG	9941	hgsc.bcm.edu;bcgsc.ca	37	3	38539163	38539164	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.LT69FS	CCCTTTAACTGGA	.	81	5	115	0	.	.	TT	38539164	AA	TT	38539163	3	4	51	1	0	0	0	0	1	0	0	0	5312	359	13	4	213	4	EXOG	3	38539163	Missense_Mutation	DNP	AA	TCGA-DD-A119-01A-11D-A12Z-10	6507030	38539163	159483267	36	7342											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	209	13	260	1	G|1.000;T|0.000	24361	T	41266104	G	T	41266104	3	4	51	1	0	0	0	0	1	0	0	0	4016	1174	41	3	107	3	CTNNB1	3	41266104	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	2726941	41266104	156756326	37	7343											
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46722798	46722798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALS2CL	NM_001190707	exon13	c.G1374A	p.R458R	CGTGTACCTGAAG	.	152	53	211	0	.	155	T	46722798	C	T	46722798	2	4	51	1	0	0	0	0	0	0	0	1	551	506	18	3		3	ALS2CL	3	46722798	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	5456694	46722798	151299632	38	7344											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47043918	47043918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NBEAL2	NM_015175	exon32	c.A5209T	p.M1737L	GACCTTATGTCAG	.	91	26	92	0	.	69	T	47043918	A	T	47043918	3	4	51	1	0	0	0	0	1	0	0	0	10189	449	16	4	5335	4	NBEAL2	3	47043918	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	321120	47043918	150978512	39	7345											
IQCB1	9657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	121527778	121527778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IQCB1	NM_001023570	exon6	c.G472T	p.E158X	TAAGTTCAACATG	.	271	103	240	0	.	90	A	121527778	C	A	121527778	4	1	51	1	0	0	0	0	0	1	0	0	7803	835	29	3	1364	3	IQCB1	3	121527778	Nonsense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	74483860	121527778	76494652	40	7346											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130174346	130174346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_153264	exon37	c.T6626C	p.I2209T	GCTTCATTGGCCA	.	277	38	301	0	.	.	C	130174346	T	C	130174346	3	2	51	1	0	0	0	0	1	0	0	0	3702	1493	52	2	6768	2	COL6A5	3	130174346	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	8646568	130174346	67848084	41	7347											
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134270790	134270790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEP63	NM_025180	exon13	c.C1403T	p.S468L	TGGAGTCACTCAA	.	93	4	83	0	.	493	T	134270790	C	T	134270790	3	4	51	1	0	0	0	0	1	0	0	0	3257	838	29	3	1445	3	CEP63	3	134270790	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	4096444	134270790	63751640	42	7348											
ATR	545	hgsc.bcm.edu;bcgsc.ca	37	3	142226823	142226823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon28	c.T4981C	p.F1661L	TAATAAATGATTC	.	114	5	139	0	.	1139	G	142226823	A	G	142226823	3	3	51	1	0	0	0	0	1	0	0	0	1204	101	4	2	3033	2	ATR	3	142226823	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	7956033	142226823	55795607	43	7349											
DHX36	170506	hgsc.bcm.edu;bcgsc.ca	37	3	153998561	153998561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHX36	NM_020865	exon21	c.A2467G	p.I823V	AATTTATATTAGA	.	88	4	109	0	.	226	C	153998561	T	C	153998561	3	2	51	1	0	0	0	0	1	0	0	0	4509	1406	49	2	579	2	DHX36	3	153998561	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	11771738	153998561	44023869	44	7350											
GMPS	8833	hgsc.bcm.edu;bcgsc.ca	37	3	155629067	155629067	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GMPS	NM_003875	exon7	c.A885G	p.K295K	GGTCAAAGGTATT	.	89	4	117	0	.	229	G	155629067	A	G	155629067	2	3	51	1	0	0	0	0	0	0	0	1	6498	86	3	2		2	GMPS	3	155629067	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1630506	155629067	42393363	45	7351											
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186272765	186272765	+	Missense_Mutation	SNP	C	C	T	rs148338731	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBCCD1	NM_001134415	exon5	c.G968A	p.S323N	TCTGAGCTCTTAG	.	156	12	171	0	C|1.000;G|0.000	108	T	186272765	C	T	186272765	3	4	51	1	0	0	0	0	1	0	0	0	15629	797	28	3	717	3	TBCCD1	3	186272765	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	30643698	186272765	11749665	46	7352											
SEPSECS	51091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25156728	25156728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPSECS	NM_016955	exon5	c.T593C	p.L198P	GTACGCAGCTCGT	.	101	11	109	0	.	90	G	25156728	A	G	25156728	3	3	51	1	0	0	0	0	1	0	0	0	14058	188	7	2	940	2	SEPSECS	4	25156728	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		25156728	165997548	47	7353											
UGDH	7358	hgsc.bcm.edu;bcgsc.ca	37	4	39510222	39510222	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UGDH	NM_003359	exon7	c.T870C	p.A290A	ATTCAGAGCCTCA	.	50	4	84	0	.	156	G	39510222	A	G	39510222	2	3	51	1	0	0	0	0	0	0	0	1	16937	291	11	2		2	UGDH	4	39510222	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	14353494	39510222	151644054	48	7354											
GABRG1	2565	hgsc.bcm.edu;bcgsc.ca	37	4	46067446	46067446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRG1	NM_173536	exon4	c.C477T	p.H159H	TATCCAGTGAGCA	.	77	4	117	0	.	92	A	46067446	G	A	46067446	2	1	51	1	0	0	0	0	0	0	0	1	6171	1020	36	3		3	GABRG1	4	46067446	Silent	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	6557224	46067446	145086830	49	7355											
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74274385	74274385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALB	NM_000477	exon4	c.T345C	p.C115C	CTGCTGTGCAAAA	.	118	5	212	0	.	96	C	74274385	T	C	74274385	2	2	51	1	0	0	0	0	0	0	0	1	486	1702	59	2		2	ALB	4	74274385	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	28206939	74274385	116879891	50	7356											
WDFY3	23001	hgsc.bcm.edu;bcgsc.ca	37	4	85731416	85731416	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDFY3	NM_014991	exon14	c.T1969C	p.L657L	CGAGCAAGGATGT	.	47	4	87	0	.	93	G	85731416	A	G	85731416	2	3	51	1	0	0	0	0	0	0	0	1	17267	69	3	2		2	WDFY3	4	85731416	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	11457031	85731416	105422860	51	7357											
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	148802995	148802995	+	Nonsense_Mutation	SNP	G	G	T	rs138388284	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon10	c.G946T	p.G316X	GGGGACGGAGAGG	.	110	38	188	0	G|1.000;A|0.000	229	T	148802995	G	T	148802995	4	4	51	1	0	0	0	0	0	1	0	0	862	1117	39	1	984	1	ARHGAP10	4	148802995	Nonsense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	63071579	148802995	42351281	52	7358											
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148984403	148984403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon21	c.C2132A	p.P711H	CGTCCCCTTTCCC	.	131	30	148	0	.	229	A	148984403	C	A	148984403	3	1	51	1	0	0	0	0	1	0	0	0	862	681	24	3	2214	3	ARHGAP10	4	148984403	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	181408	148984403	42169873	53	7359											
FHDC1	85462	hgsc.bcm.edu;bcgsc.ca	37	4	153884235	153884235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FHDC1	NM_033393	exon7	c.A982G	p.T328A	GCAGACACAAAAG	.	68	4	93	0	.	136	G	153884235	A	G	153884235	3	3	51	1	0	0	0	0	1	0	0	0	5876	159	6	2	1008	2	FHDC1	4	153884235	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	4899832	153884235	37270041	54	7360											
GUCY1B3	2983	ucsc.edu;bcgsc.ca	37	4	156724822	156724822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_000857	exon11	c.A1460G	p.E487G	TACCAGAGCCATG	.	50	4	78	1	.	.	G	156724822	A	G	156724822	3	3	51	1	0	0	0	0	1	0	0	0	6895	304	11	2	1502	2	GUCY1B3	4	156724822	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	2840587	156724822	34429454	55	7361											
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	189068092	189068092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIML1	NM_178556	exon6	c.G973A	p.D325N	AGATTTGACCAGT	.	109	5	127	0	.	156	A	189068092	G	A	189068092	3	1	51	1	0	0	0	0	1	0	0	0	16547	1290	45	3	995	3	TRIML1	4	189068092	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	32343270	189068092	2086184	56	7362											
SEMA5A	9037	hgsc.bcm.edu;bcgsc.ca	37	5	9122917	9122917	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEMA5A	NM_003966	exon14	c.T1632C	p.G544G	CCACACACCAAAG	.	135	6	158	0	.	91	G	9122917	A	G	9122917	2	3	51	1	0	0	0	0	0	0	0	1	14037	146	6	2		2	SEMA5A	5	9122917	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		9122917	171792343	57	7363											
CDH18	1016	hgsc.bcm.edu;bcgsc.ca	37	5	19544066	19544066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDH18	NM_001167667	exon9	c.T1302C	p.D434D	ATTGGCATCAATG	.	114	6	169	0	.	159	G	19544066	A	G	19544066	2	3	51	1	0	0	0	0	0	0	0	1	3103	214	8	2		2	CDH18	5	19544066	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	10421149	19544066	161371194	58	7364											
FYB	2533	hgsc.bcm.edu;bcgsc.ca	37	5	39130699	39130699	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FYB	NM_001243093	exon10	c.A1863G	p.G621G	TCCACTTCCACTC	.	73	5	72	0	.	24	C	39130699	T	C	39130699	2	2	51	1	0	0	0	0	0	0	0	1	6124	1770	62	2		2	FYB	5	39130699	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	19586633	39130699	141784561	59	7365											
ADAMTS6	11174	hgsc.bcm.edu;bcgsc.ca	37	5	64510631	64510631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADAMTS6	NM_197941	exon20	c.T2565C	p.T855T	AGCACAAGTAGCT	.	110	5	119	0	.	226	G	64510631	A	G	64510631	2	3	51	1	0	0	0	0	0	0	0	1	270	59	3	2		2	ADAMTS6	5	64510631	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	25379932	64510631	116404629	60	7366											
PPWD1	23398	hgsc.bcm.edu;bcgsc.ca	37	5	64868003	64868003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPWD1	NM_015342	exon5	c.T859C	p.C287R	AGCGTATGTTTTT	.	75	4	84	0	.	91	C	64868003	T	C	64868003	3	2	51	1	0	0	0	0	1	0	0	0	12414	1464	51	2	877	2	PPWD1	5	64868003	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	357372	64868003	116047257	61	7367											
TRIM23	373	hgsc.bcm.edu;bcgsc.ca	37	5	64890421	64890421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM23	NM_033228	exon10	c.A1472G	p.H491R	TCGCTGTGTGCTT	.	74	4	85	0	.	230	C	64890421	T	C	64890421	3	2	51	1	0	0	0	0	1	0	0	0	16494	1696	59	2	327	2	TRIM23	5	64890421	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	22418	64890421	116024839	62	7368											
ERAP1	51752	hgsc.bcm.edu;bcgsc.ca	37	5	96119656	96119656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERAP1	NM_001198541	exon14	c.A2072G	p.D691G	TTCATATCTCTTT	.	89	4	110	0	.	70	C	96119656	T	C	96119656	3	2	51	1	0	0	0	0	1	0	0	0	5203	1435	50	2	810	2	ERAP1	5	96119656	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	31229235	96119656	84795604	63	7369											
ST8SIA4	7903	hgsc.bcm.edu;bcgsc.ca	37	5	100222086	100222086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ST8SIA4	NM_175052	exon3	c.A464G	p.E155G	CCACATTCACTGT	.	169	7	201	0	.	153	C	100222086	T	C	100222086	3	2	51	1	0	0	0	0	1	0	0	0	15233	1783	62	2	631	2	ST8SIA4	5	100222086	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	4102430	100222086	80693174	64	7370											
YTHDC2	64848	hgsc.bcm.edu;bcgsc.ca	37	5	112927702	112927702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YTHDC2	NM_022828	exon28	c.A4039G	p.R1347G	TTTTCTAGGATGT	.	87	4	84	0	.	92	G	112927702	A	G	112927702	3	3	51	1	0	0	0	0	1	0	0	0	17494	411	15	2	4149	2	YTHDC2	5	112927702	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	12705616	112927702	67987558	65	7371											
PKD2L2	27039	hgsc.bcm.edu;bcgsc.ca	37	5	137271514	137271514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD2L2	NM_014386	exon13	c.A1700G	p.K567R	TGAAAAAATGGAA	.	92	4	71	0	.	90	G	137271514	A	G	137271514	3	3	51	1	0	0	0	0	1	0	0	0	11968	14	1	2	1750	2	PKD2L2	5	137271514	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	24343812	137271514	43643746	66	7372											
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140250200	140250200	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHA11	NM_018902	exon1	c.G1512A	p.S504S	GCTGTCGAGCTAC	.	142	11	114	0	.	67	A	140250200	G	A	140250200	2	1	51	1	0	0	0	0	0	0	0	1	11521	1045	37	1		1	PCDHA11	5	140250200	Silent	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	2978686	140250200	40665060	67	7373											
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154394167	154394167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF4B	NM_001099293	exon1	c.A748C	p.T250P	AAGAAAACCAAGG	.	269	19	227	0	.	1	C	154394167	A	C	154394167	3	2	51	1	0	0	0	0	1	0	0	0	8304	43	2	5	750	5	KIF4B	5	154394167	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	14143967	154394167	26521093	68	7374											
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26156943	26156943	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A325T	p.K109X	CTCAACAAGAAGG	.	141	52	119	0	.	154	T	26156943	A	T	26156943	4	4	51	1	0	0	0	0	0	1	0	0	7126	131	5	4	327	4	HIST1H1E	6	26156943	Nonsense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		26156943	144958124	69	7375	42	2									
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26156946	26156946	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A328T	p.K110X	AACAAGAAGGCGG	.	146	55	110	0	.	154	T	26156946	A	T	26156946	4	4	51	1	0	0	0	0	0	1	0	0	7126	247	9	4	330	4	HIST1H1E	6	26156946	Nonsense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	3	26156946	144958121	70	7376	42	2									
APOM	55937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31623826	31623826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOM	NM_019101	exon1	c.A83C	p.Q28P	ACAGTCAACTGAC	.	208	41	158	0	.	90	C	31623826	A	C	31623826	3	2	51	1	0	0	0	0	1	0	0	0	812	130	5	5	85	5	APOM	6	31623826	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5466880	31623826	139491241	71	7377											
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	42933450	42933450	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PEX6	NM_000287	exon13	c.C2440T	p.R814X	CACTTCGCCCCCG	.	184	17	148	0	.	91	A	42933450	G	A	42933450	4	1	51	1	0	0	0	0	0	1	0	0	11750	1095	38	1	522	1	PEX6	6	42933450	Nonsense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	11309624	42933450	128181617	72	7378											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	72678720	72678720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIMS1	NM_014989	exon2	c.T199C	p.C67R	GCTGCCTGCAAAA	.	102	10	96	0	.	144	C	72678720	T	C	72678720	3	2	51	1	0	0	0	0	1	0	0	0	13367	1580	55	2	205	2	RIMS1	6	72678720	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	29745270	72678720	98436347	73	7379											
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84311120	84311120	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNAP91	NM_001242792	exon15	c.A1194T	p.A398A	AATCTGTGCTTCA	.	177	109	260	0	.	23	A	84311120	T	A	84311120	2	1	51	1	0	0	0	0	0	0	0	1	14833	1683	59	4		4	SNAP91	6	84311120	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	11632400	84311120	86803947	74	7380											
QRSL1	55278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107113765	107113765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	QRSL1	NM_018292	exon11	c.A1475G	p.K492R	TAGCCAAATGGTT	.	112	12	197	1	.	90	G	107113765	A	G	107113765	3	3	51	1	0	0	0	0	1	0	0	0	12881	14	1	2	1517	2	QRSL1	6	107113765	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	22802645	107113765	64001302	75	7381											
STX7	8417	hgsc.bcm.edu;bcgsc.ca	37	6	132796761	132796761	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STX7	NM_003569	exon3	c.T126C	p.P42P	ATCTTGAGGTGTT	.	62	4	63	0	.	90	G	132796761	A	G	132796761	2	3	51	1	0	0	0	0	0	0	0	1	15349	291	11	2		2	STX7	6	132796761	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	25682996	132796761	38318306	76	7382											
ALDH8A1	64577	hgsc.bcm.edu;bcgsc.ca	37	6	135239987	135239987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH8A1	NM_022568	exon7	c.A1030G	p.R344G	GAGCTCTCTTGAC	.	106	6	124	0	.	94	C	135239987	T	C	135239987	3	2	51	1	0	0	0	0	1	0	0	0	505	1559	54	2	437	2	ALDH8A1	6	135239987	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	2443226	135239987	35875080	77	7383											
C6orf211	79624	hgsc.bcm.edu;bcgsc.ca	37	6	151789976	151789976	+	Missense_Mutation	SNP	T	T	C	rs140306203	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C6orf211	NM_024573	exon5	c.T1057C	p.Y353H	GACTTATATGCTG	.	93	4	202	0	T|1.000;C|0.000	90	C	151789976	T	C	151789976	3	2	51	1	0	0	0	0	1	0	0	0	2354	1406	49	2	1075	2	C6orf211	6	151789976	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	16549989	151789976	19325091	78	7384											
IPCEF1	26034	hgsc.bcm.edu;bcgsc.ca	37	6	154480993	154480993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IPCEF1	NM_001130699	exon13	c.T1287C	p.P429P	AGAAGAAGGTGAT	.	57	5	79	0	.	90	G	154480993	A	G	154480993	2	3	51	1	0	0	0	0	0	0	0	1	7791	59	3	2		2	IPCEF1	6	154480993	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	2691017	154480993	16634074	79	7385											
WDR27	253769	hgsc.bcm.edu;bcgsc.ca	37	6	170002368	170002368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR27	NM_182552	exon23	c.A2371G	p.I791V	AAGCGATTCCACA	.	72	5	57	0	.	69	C	170002368	T	C	170002368	3	2	51	1	0	0	0	0	1	0	0	0	17281	1493	52	2	214	2	WDR27	6	170002368	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	15521375	170002368	1112699	80	7386											
DFNA5	1687	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	24756897	24756897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DFNA5	NM_001127453	exon5	c.T673C	p.Y225H	TCACGTATAACTC	.	43	4	61	0	.	91	G	24756897	A	G	24756897	3	3	51	1	0	0	0	0	1	0	0	0	4454	449	16	2	841	2	DFNA5	7	24756897	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		24756897	134381766	81	7387											
C7orf25	79020	hgsc.bcm.edu;bcgsc.ca	37	7	42950513	42950513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C7orf25	NM_001099858	exon2	c.A161G	p.N54S	GCATTATTCCTTT	.	70	4	103	0	.	69	C	42950513	T	C	42950513	3	2	51	1	0	0	0	0	1	0	0	0	2380	1493	52	2	1282	2	C7orf25	7	42950513	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	18193616	42950513	116188150	82	7388											
CCM2	83605	hgsc.bcm.edu;bcgsc.ca	37	7	45077891	45077891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCM2	NM_001029835	exon2	c.G133T	p.G45C	CTAAAAGGTGAAA	.	71	4	93	0	.	90	T	45077891	G	T	45077891	3	4	51	1	0	0	0	0	1	0	0	0	2908	1000	35	3	173	3	CCM2	7	45077891	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	2127378	45077891	114060772	83	7389											
COBL	23242	hgsc.bcm.edu;bcgsc.ca	37	7	51096495	51096495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon10	c.A2298G	p.K766K	TCTGACTTTCCCA	.	86	5	150	0	.	95	C	51096495	T	C	51096495	2	2	51	1	0	0	0	0	0	0	0	1	3653	1606	56	2		2	COBL	7	51096495	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	6018604	51096495	108042168	84	7390											
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	57522850	57522851	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.N80F	AAGAGAAATGAGA	.	34	9	41	0	.	.	TT	57522851	AA	TT	57522850	3	4	51	1	0	0	0	0	1	0	0	0	18116	14	1	4	248	4	ZNF716	7	57522850	Missense_Mutation	DNP	AA	TCGA-DD-A119-01A-11D-A12Z-10	6426355	57522850	101615813	85	7391											
ZNF92	168374	hgsc.bcm.edu;bcgsc.ca	37	7	64864692	64864692	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF92	NM_152626	exon4	c.T1665C	p.H555H	TACACATCAGATA	.	82	4	106	0	.	514	C	64864692	T	C	64864692	2	2	51	1	0	0	0	0	0	0	0	1	18198	1432	50	2		2	ZNF92	7	64864692	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	7341842	64864692	94273971	86	7392											
AKAP9	10142	hgsc.bcm.edu;bcgsc.ca	37	7	91706167	91706167	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP9	NM_005751	exon29	c.6613-2A>G	.	TATTAAAGATTAC	.	121	5	171	0	.	755	G	91706167	A	G	91706167	5	3	51	1	0	0	0	0	0	0	1	0	459	86	3	2	6725	2	AKAP9	7	91706167	Splice_Site	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	26841475	91706167	67432496	87	7393											
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98609873	98609873	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRRAP	NM_001244580	exon72	c.C11475T	p.L3825L	CAACCTCGCCCAG	.	63	12	81	0	.	923	T	98609873	C	T	98609873	2	4	51	1	0	0	0	0	0	0	0	1	16598	871	31	1		1	TRRAP	7	98609873	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	6903706	98609873	60528790	88	7394											
CFTR	1080	hgsc.bcm.edu;bcgsc.ca	37	7	117232660	117232660	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CFTR	NM_000492	exon14	c.T2439C	p.S813S	GTTATCTCAAGAA	.	61	4	83	0	.	518	C	117232660	T	C	117232660	2	2	51	1	0	0	0	0	0	0	0	1	3294	1538	54	2		2	CFTR	7	117232660	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	18622787	117232660	41906003	89	7395											
OR9A4	130075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141619595	141619595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR9A4	NM_001001656	exon1	c.G920T	p.R307L	TGAAACGCTGCTG	.	61	24	69	0	.	91	T	141619595	G	T	141619595	3	4	51	1	0	0	0	0	1	0	0	0	11249	1087	38	1	922	1	OR9A4	7	141619595	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	24386935	141619595	17519068	90	7396											
FAM131B	9715	hgsc.bcm.edu;bcgsc.ca	37	7	143054115	143054115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM131B	NM_001031690	exon7	c.A611G	p.D204G	AGGGCATCTGGAA	.	74	4	74	0	.	90	C	143054115	T	C	143054115	3	2	51	1	0	0	0	0	1	0	0	0	5440	1449	50	2	475	2	FAM131B	7	143054115	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1434520	143054115	16084548	91	7397											
XPO7	23039	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	21848326	21848326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XPO7	NM_015024	exon18	c.A1937G	p.E646G	AGAGCGAGCACTT	.	21	4	88	0	.	273	G	21848326	A	G	21848326	3	3	51	1	0	0	0	0	1	0	0	0	17446	304	11	2	2059	2	XPO7	8	21848326	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		21848326	124515696	92	7398											
PPP2R2A	5520	hgsc.bcm.edu;bcgsc.ca	37	8	26227714	26227714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP2R2A	NM_001177591	exon10	c.A1159G	p.I387V	CGAGACATAACCC	.	108	5	200	0	.	659	G	26227714	A	G	26227714	3	3	51	1	0	0	0	0	1	0	0	0	12384	217	8	2	1208	2	PPP2R2A	8	26227714	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	4379388	26227714	120136308	93	7399											
KCNB2	9312	broad.mit.edu;bcgsc.ca	37	8	73480279	73480279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNB2	NM_004770	exon2	c.C310T	p.R104W	TTCTACCGGACCG	.	302	21	178	1	.	158	T	73480279	C	T	73480279	3	4	51	1	0	0	0	0	1	0	0	0	8013	643	23	1	312	1	KCNB2	8	73480279	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	47252565	73480279	72883743	94	7400											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77616406	77616406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFHX4	NM_024721	exon2	c.A83G	p.D28G	AACTTGATAATGA	.	281	27	182	0	.	98	G	77616406	A	G	77616406	3	3	51	1	0	0	0	0	1	0	0	0	17632	333	12	2	85	2	ZFHX4	8	77616406	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	4136127	77616406	68747616	95	7401											
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80553709	80553709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STMN2	NM_007029	exon3	c.T212C	p.L71S	GAACTTTAGCTTC	.	246	35	122	0	.	515	C	80553709	T	C	80553709	3	2	51	1	0	0	0	0	1	0	0	0	15308	1764	61	2	222	2	STMN2	8	80553709	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	2937303	80553709	65810313	96	7402											
CNBD1	168975	hgsc.bcm.edu;bcgsc.ca	37	8	88218281	88218281	+	Silent	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNBD1	NM_173538	exon5	c.A492C	p.P164P	AATTCCAGATTTA	.	113	5	63	0	.	3	C	88218281	A	C	88218281	2	2	51	1	0	0	0	0	0	0	0	1	3591	175	7	5		5	CNBD1	8	88218281	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	7664572	88218281	58145741	97	7403											
LRRC24	441381	hgsc.bcm.edu;broad.mit.edu	37	8	145748134	145748134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC24	NM_001024678	exon5	c.G1267A	p.A423T	TCATGGCGACCAG	.	34	7	16	0	.	90	T	145748134	C	T	145748134	3	4	51	1	0	0	0	0	1	0	0	0	8979	768	27	1	278	1	LRRC24	8	145748134	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	57529853	145748134	615888	98	7404											
UHRF2	115426	hgsc.bcm.edu;bcgsc.ca	37	9	6493855	6493855	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UHRF2	NM_152896	exon10	c.A1527G	p.G509G	CACTGGAAGCGGT	.	74	4	120	0	.	721	G	6493855	A	G	6493855	2	3	51	1	0	0	0	0	0	0	0	1	16967	233	9	2		2	UHRF2	9	6493855	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		6493855	134719576	99	7405											
TEK	7010	hgsc.bcm.edu;bcgsc.ca	37	9	27213566	27213566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEK	NM_000459	exon18	c.G2962A	p.G988S	TCCCGAGGTCAAG	.	72	4	92	0	.	1584	A	27213566	G	A	27213566	3	1	51	1	0	0	0	0	1	0	0	0	15748	1000	35	3	3032	3	TEK	9	27213566	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	20719711	27213566	113999865	100	7406											
C9orf72	203228	hgsc.bcm.edu;bcgsc.ca	37	9	27556627	27556627	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C9orf72	NM_018325	exon8	c.A1023G	p.R341R	AGTGGCTCTCCAG	.	119	5	208	0	.	517	C	27556627	T	C	27556627	2	2	51	1	0	0	0	0	0	0	0	1	2495	1548	54	2		2	C9orf72	9	27556627	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	343061	27556627	113656804	101	7407											
VPS13A	23230	hgsc.bcm.edu;bcgsc.ca	37	9	79960046	79960046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS13A	NM_001018038	exon52	c.A7277G	p.Q2426R	TTGTTCAATACAA	.	88	4	104	0	.	161	G	79960046	A	G	79960046	3	3	51	1	0	0	0	0	1	0	0	0	17186	130	5	2	7483	2	VPS13A	9	79960046	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	52403419	79960046	61253385	102	7408											
S1PR3	1903	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	91617111	91617111	+	Silent	SNP	C	C	T	rs138808274		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	S1PR3	NM_005226	exon2	c.C996T	p.L332L	TGCGCTCGACCCA	.	27	8	40	1	C|1.000;T|0.000	949	T	91617111	C	T	91617111	2	4	51	1	0	0	0	0	0	0	0	1	13795	871	31	1		1	S1PR3	9	91617111	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	11657065	91617111	49596320	103	7409											
WDR31	114987	hgsc.bcm.edu;bcgsc.ca	37	9	116079110	116079110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR31	NM_001012361	exon11	c.T1023C	p.C341C	ACTTGCACACAAT	.	56	4	90	0	.	90	G	116079110	A	G	116079110	2	3	51	1	0	0	0	0	0	0	0	1	17283	157	6	2		2	WDR31	9	116079110	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	24461999	116079110	25134321	104	7410											
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123156882	123156882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDK5RAP2	NM_018249	exon36	c.A5486T	p.H1829L	TTTTTATGTAGTT	.	252	35	319	0	.	229	A	123156882	T	A	123156882	3	1	51	1	0	0	0	0	1	0	0	0	3146	1464	51	4	207	4	CDK5RAP2	9	123156882	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	7077772	123156882	18056549	105	7411											
ODF2	4957	hgsc.bcm.edu;bcgsc.ca	37	9	131231625	131231625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ODF2	NM_153435	exon5	c.A605G	p.K202R	GTCTGAAGTCTGA	.	63	4	89	0	.	69	G	131231625	A	G	131231625	3	3	51	1	0	0	0	0	1	0	0	0	10827	72	3	2	482	2	ODF2	9	131231625	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	8074743	131231625	9981806	106	7412											
LRRC8A	56262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131670854	131670855	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC8A	NM_001127244	exon3	c.1411_1412del	p.471_471del	ACGGGCCTCAAGG	.	40	11	68	0	.	90	-	131670855	CT	-	131670854	7	5	51	1	0	1	0	1	0	0	0	0	9021	681	24	0	1413	0	LRRC8A	9	131670854	Frame_Shift_Del	DEL	CT	TCGA-DD-A119-01A-11D-A12Z-10	439229	131670854	9542577	107	7413											
GLT6D1	360203	hgsc.bcm.edu;bcgsc.ca	37	9	138516329	138516329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLT6D1	NM_182974	exon5	c.G445A	p.V149M	CATGCACCAGGGG	.	47	4	80	0	.	91	T	138516329	C	T	138516329	3	4	51	1	0	0	0	0	1	0	0	0	6468	507	18	3	389	3	GLT6D1	9	138516329	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	6845475	138516329	2697102	108	7414											
LCN8	138307	hgsc.bcm.edu;bcgsc.ca	37	9	139651509	139651509	+	Missense_Mutation	SNP	C	C	T	rs140571672		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LCN8	NM_178469	exon2	c.G136A	p.V46M	CCTTCACGGTCAG	.	76	4	90	0	C|1.000;T|0.000	91	T	139651509	C	T	139651509	3	4	51	1	0	0	0	0	1	0	0	0	8686	536	19	1	346	1	LCN8	9	139651509	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	1135180	139651509	1561922	109	7415											
SFMBT2	57713	hgsc.bcm.edu;bcgsc.ca	37	10	7247842	7247842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SFMBT2	NM_001029880	exon12	c.A1379G	p.D460G	AAGATGTCCATGG	.	95	5	144	0	.	141	C	7247842	T	C	7247842	3	2	51	1	0	0	0	0	1	0	0	0	14158	1667	58	2	1345	2	SFMBT2	10	7247842	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		7247842	128286905	110	7416											
CISD1	55847	hgsc.bcm.edu;bcgsc.ca	37	10	60047332	60047332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CISD1	NM_018464	exon3	c.T249C	p.C83C	ATTCTGTGATGGG	.	99	4	134	0	.	90	C	60047332	T	C	60047332	2	2	51	1	0	0	0	0	0	0	0	1	3435	1702	59	2		2	CISD1	10	60047332	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	52799490	60047332	75487415	111	7417											
MAT1A	4143	hgsc.bcm.edu;bcgsc.ca	37	10	82049166	82049166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAT1A	NM_000429	exon1	c.T14C	p.V5A	CCATCCACCGGTC	.	85	6	179	0	.	90	G	82049166	A	G	82049166	3	3	51	1	0	0	0	0	1	0	0	0	9329	159	6	2	1209	2	MAT1A	10	82049166	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	22001834	82049166	53485581	112	7418											
IFIT1B	439996	hgsc.bcm.edu;bcgsc.ca	37	10	91144106	91144106	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT1B	NM_001010987	exon2	c.C1036T	p.L346L	GTTGACCTGGCTG	.	61	4	60	0	.	90	T	91144106	C	T	91144106	2	4	51	1	0	0	0	0	0	0	0	1	7522	680	24	3		3	IFIT1B	10	91144106	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	9094940	91144106	44390641	113	7419											
ANKRD2	26287	hgsc.bcm.edu;bcgsc.ca	37	10	99342105	99342105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANKRD2	NM_020349	exon7	c.A769G	p.T257A	GTCCGGACAGGGC	.	65	5	113	0	.	90	G	99342105	A	G	99342105	3	3	51	1	0	0	0	0	1	0	0	0	647	275	10	2	795	2	ANKRD2	10	99342105	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	8197999	99342105	36192642	114	7420											
HPS6	79803	hgsc.bcm.edu;bcgsc.ca	37	10	103827332	103827332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HPS6	NM_024747	exon1	c.C2101T	p.P701S	CTGGCTCCAGCTG	.	56	4	55	0	.	90	T	103827332	C	T	103827332	3	4	51	1	0	0	0	0	1	0	0	0	7343	855	30	3	2103	3	HPS6	10	103827332	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	4485227	103827332	31707415	115	7421											
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105750545	105750545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLK	NM_014720	exon2	c.A263G	p.H88R	GTGATCACCCAAA	.	127	37	114	0	.	549	G	105750545	A	G	105750545	3	3	51	1	0	0	0	0	1	0	0	0	14748	159	6	2	269	2	SLK	10	105750545	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1923213	105750545	29784202	116	7422											
OR51B4	79339	hgsc.bcm.edu;bcgsc.ca	37	11	5322255	5322255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR51B4	NM_033179	exon1	c.A922G	p.S308G	CCCTACTCTGCCC	.	72	4	84	0	.	70	C	5322255	T	C	5322255	3	2	51	1	0	0	0	0	1	0	0	0	11090	1551	54	2	13	2	OR51B4	11	5322255	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		5322255	129684261	117	7423											
TRIM3	10612	hgsc.bcm.edu;bcgsc.ca	37	11	6471835	6471835	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM3	NM_001248006	exon10	c.T1887C	p.A629A	GTTCACAGCCACA	.	101	5	84	0	.	714	G	6471835	A	G	6471835	2	3	51	1	0	0	0	0	0	0	0	1	16501	175	7	2		2	TRIM3	11	6471835	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1149580	6471835	128534681	118	7424											
ZNF215	7762	hgsc.bcm.edu;bcgsc.ca	37	11	6977409	6977409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF215	NM_013250	exon7	c.C1201T	p.H401Y	ATCATTCACACAG	.	76	4	68	0	.	514	T	6977409	C	T	6977409	3	4	51	1	0	0	0	0	1	0	0	0	17768	826	29	3	1219	3	ZNF215	11	6977409	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	505574	6977409	128029107	119	7425											
OR4B1	119765	hgsc.bcm.edu;bcgsc.ca	37	11	48239231	48239231	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR4B1	NM_001005470	exon1	c.A870G	p.A290A	GAATGCAGAGGTG	.	74	4	61	0	.	72	G	48239231	A	G	48239231	2	3	51	1	0	0	0	0	0	0	0	1	11044	175	7	2		2	OR4B1	11	48239231	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	41261822	48239231	86767285	120	7426											
SERPING1	710	hgsc.bcm.edu;bcgsc.ca	37	11	57374013	57374013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERPING1	NM_001032295	exon5	c.A1022G	p.K341R	CTTTGAAAGCCAA	.	65	4	82	0	.	650	G	57374013	A	G	57374013	3	3	51	1	0	0	0	0	1	0	0	0	14116	14	1	2	1040	2	SERPING1	11	57374013	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	9134782	57374013	77632503	121	7427											
VPS37C	55048	hgsc.bcm.edu;bcgsc.ca	37	11	60900811	60900811	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS37C	NM_017966	exon5	c.266-2A>G	.	TTTCTCTGGAAGG	.	61	4	69	0	.	90	C	60900811	T	C	60900811	5	2	51	1	0	0	0	0	0	0	1	0	17204	1594	55	2	811	2	VPS37C	11	60900811	Splice_Site	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	3526798	60900811	74105705	122	7428											
DDB1	1642	hgsc.bcm.edu;bcgsc.ca	37	11	61097525	61097525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DDB1	NM_001923	exon3	c.T232C	p.F78L	AGATAAACAGCAG	.	142	6	141	0	.	661	G	61097525	A	G	61097525	3	3	51	1	0	0	0	0	1	0	0	0	4323	43	2	2	3290	2	DDB1	11	61097525	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	196714	61097525	73908991	123	7429											
SCGB1A1	7356	hgsc.bcm.edu;bcgsc.ca	37	11	62189867	62189867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCGB1A1	NM_003357	exon2	c.T230C	p.I77T	AAAGCATCATTAA	.	71	4	97	0	.	90	C	62189867	T	C	62189867	3	2	51	1	0	0	0	0	1	0	0	0	13894	1435	50	2	236	2	SCGB1A1	11	62189867	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1092342	62189867	72816649	124	7430											
ATL3	25923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63396832	63396832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATL3	NM_015459	exon13	c.G1585T	p.A529S	CAACTGCATCCCT	.	249	102	277	0	.	69	A	63396832	C	A	63396832	3	1	51	1	0	0	0	0	1	0	0	0	1108	710	25	3	44	3	ATL3	11	63396832	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	1206965	63396832	71609684	125	7431											
DPP3	10072	hgsc.bcm.edu;broad.mit.edu	37	11	66249887	66249887	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DPP3	NM_001256670	exon2	c.C216T	p.P72P	GGACCCCGACCAG	.	34	4	30	0	.	46	T	66249887	C	T	66249887	2	4	51	1	0	0	0	0	0	0	0	1	4728	639	23	1		1	DPP3	11	66249887	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	2853055	66249887	68756629	126	7432											
C2CD3	26005	hgsc.bcm.edu;bcgsc.ca	37	11	73824846	73824846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2CD3	NM_015531	exon11	c.T1822C	p.S608P	TACTGGAGGCGAG	.	76	5	90	0	.	75	G	73824846	A	G	73824846	3	3	51	1	0	0	0	0	1	0	0	0	2154	304	11	2	4153	2	C2CD3	11	73824846	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	7574959	73824846	61181670	127	7433											
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	83173062	83173062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DLG2	NM_001142699	exon27	c.T2804C	p.F935S	TCTCCAAATTCTT	.	496	53	552	0	.	96	G	83173062	A	G	83173062	3	3	51	1	0	0	0	0	1	0	0	0	4555	14	1	2	131	2	DLG2	11	83173062	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	9348216	83173062	51833454	128	7434											
MED17	9440	hgsc.bcm.edu;bcgsc.ca	37	11	93528080	93528080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED17	NM_004268	exon6	c.C866T	p.P289L	GTTCCCCACATTG	.	84	4	99	0	.	187	T	93528080	C	T	93528080	3	4	51	1	0	0	0	0	1	0	0	0	9435	594	21	3	888	3	MED17	11	93528080	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	10355018	93528080	41478436	129	7435											
EXPH5	23086	hgsc.bcm.edu;bcgsc.ca	37	11	108398908	108398908	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon4	c.T447C	p.C149C	GCCATCACATCTG	.	66	4	84	0	.	95	G	108398908	A	G	108398908	2	3	51	1	0	0	0	0	0	0	0	1	5322	157	6	2		2	EXPH5	11	108398908	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	14870828	108398908	26607608	130	7436											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108464205	108464205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon1	c.A59G	p.K20R	AGGATCTTCCTGG	.	199	8	202	0	.	95	C	108464205	T	C	108464205	3	2	51	1	0	0	0	0	1	0	0	0	5322	1609	56	2	5934	2	EXPH5	11	108464205	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	65297	108464205	26542311	131	7437											
TRIM29	23650	hgsc.bcm.edu;bcgsc.ca	37	11	120007994	120007994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM29	NM_012101	exon1	c.T746C	p.F249S	TCCTGGAACATGC	.	94	5	96	0	.	291	G	120007994	A	G	120007994	3	3	51	1	0	0	0	0	1	0	0	0	16500	246	9	2	1056	2	TRIM29	11	120007994	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	11543789	120007994	14998522	132	7438											
NFRKB	4798	hgsc.bcm.edu;bcgsc.ca	37	11	129752348	129752348	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFRKB	NM_006165	exon8	c.A1155G	p.E385E	TTACTCTTCCTTG	.	120	6	96	0	.	93	C	129752348	T	C	129752348	2	2	51	1	0	0	0	0	0	0	0	1	10384	1606	56	2		2	NFRKB	11	129752348	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	9744354	129752348	5254168	133	7439											
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4553334	4553334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGF6	NM_020996	exon2	c.G415A	p.V139I	TGGCAACGAAGAG	.	95	24	103	0	.	659	T	4553334	C	T	4553334	3	4	51	1	0	0	0	0	1	0	0	0	5856	536	19	1	219	1	FGF6	12	4553334	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10		4553334	129298561	134	7440											
APOBEC1	339	hgsc.bcm.edu;bcgsc.ca	37	12	7805229	7805229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOBEC1	NM_001644	exon3	c.T247C	p.S83P	TGATGGAGCAGCT	.	64	4	94	0	.	226	G	7805229	A	G	7805229	3	3	51	1	0	0	0	0	1	0	0	0	787	304	11	2	475	2	APOBEC1	12	7805229	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	3251895	7805229	126046666	135	7441											
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9318676	9318676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PZP	NM_002864	exon18	c.A2230G	p.T744A	TCCAAGTCTCAGG	.	89	5	135	0	.	157	C	9318676	T	C	9318676	3	2	51	1	0	0	0	0	1	0	0	0	12869	1667	58	2	2294	2	PZP	12	9318676	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1513447	9318676	124533219	136	7442											
MED21	9412	hgsc.bcm.edu;bcgsc.ca	37	12	27181241	27181241	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED21	NM_004264	exon4	c.A282G	p.E94E	GCTAGAAGAAGAA	.	75	4	90	0	.	227	G	27181241	A	G	27181241	2	3	51	1	0	0	0	0	0	0	0	1	9439	69	3	2		2	MED21	12	27181241	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	17862565	27181241	106670654	137	7443											
DENND5B	160518	hgsc.bcm.edu;bcgsc.ca	37	12	31605207	31605207	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DENND5B	NM_144973	exon5	c.A1296G	p.K432K	GTTCTTTTTGTCA	.	88	4	144	0	.	24	C	31605207	T	C	31605207	2	2	51	1	0	0	0	0	0	0	0	1	4437	1838	64	2		2	DENND5B	12	31605207	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	4423966	31605207	102246688	138	7444											
DNM1L	10059	hgsc.bcm.edu;bcgsc.ca	37	12	32854462	32854462	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNM1L	NM_012062	exon2	c.A216G	p.Q72Q	TTCACAAGAAGAT	.	88	4	93	0	.	92	G	32854462	A	G	32854462	2	3	51	1	0	0	0	0	0	0	0	1	4671	69	3	2		2	DNM1L	12	32854462	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1249255	32854462	100997433	139	7445											
H1FNT	341567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48723755	48723755	+	Silent	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	H1FNT	NM_181788	exon1	c.G681C	p.P227P	CACGCCGAGGTCA	.	37	8	51	1	.	91	C	48723755	G	C	48723755	2	2	51	1	0	0	0	0	0	0	0	1	6921	1045	37	4		4	H1FNT	12	48723755	Silent	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	15869293	48723755	85128140	140	7446											
RDH16	8608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57351246	57351246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RDH16	NM_003708	exon1	c.A1G	p.M1V	GCCACATGGCTTT	.	79	9	113	0	.	90	C	57351246	T	C	57351246	3	2	51	1	0	0	0	0	1	0	0	0	13194	1464	51	2	968	2	RDH16	12	57351246	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	8627491	57351246	76500649	141	7447											
MON2	23041	hgsc.bcm.edu;bcgsc.ca	37	12	62887709	62887709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MON2	NM_015026	exon3	c.A190G	p.S64G	GAGAACAGCTCAG	.	86	4	142	0	.	514	G	62887709	A	G	62887709	3	3	51	1	0	0	0	0	1	0	0	0	9700	188	7	2	200	2	MON2	12	62887709	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5536463	62887709	70964186	142	7448											
FRS2	10818	hgsc.bcm.edu;bcgsc.ca	37	12	69968235	69968235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRS2	NM_001042555	exon10	c.A1027G	p.R343G	CAGAGAAGAACTG	.	64	4	89	0	.	658	G	69968235	A	G	69968235	3	3	51	1	0	0	0	0	1	0	0	0	6061	64	3	2	1045	2	FRS2	12	69968235	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	7080526	69968235	63883660	143	7449											
PTPRB	5787	hgsc.bcm.edu;bcgsc.ca	37	12	70989899	70989899	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRB	NM_001109754	exon5	c.A1188G	p.K396K	ATTGTATTTACTA	.	98	5	149	0	.	226	C	70989899	T	C	70989899	2	2	51	1	0	0	0	0	0	0	0	1	12796	1490	52	2		2	PTPRB	12	70989899	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	1021664	70989899	62861996	144	7450											
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	90014010	90014010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATP2B1	NM_001001323	exon10	c.A1595G	p.E532G	TCTTTCTCTGGTG	.	96	4	139	0	.	516	C	90014010	T	C	90014010	3	2	51	1	0	0	0	0	1	0	0	0	1139	1551	54	2	2269	2	ATP2B1	12	90014010	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	19024111	90014010	43837885	145	7451											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	131616271	131616271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR133	NM_198827	exon21	c.T2177C	p.V726A	TGCAGGTCAACAT	.	167	7	140	0	.	191	C	131616271	T	C	131616271	3	2	51	1	0	0	0	0	1	0	0	0	6643	1681	58	2	2259	2	GPR133	12	131616271	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	41602261	131616271	2235624	146	7452											
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23906630	23906630	+	Silent	SNP	A	A	G	rs148605896	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.T11385C	p.A3795A	CACAAAAGCAACC	.	110	5	120	0	A|0.999;C|0.001	298	G	23906630	A	G	23906630	2	3	51	1	0	0	0	0	0	0	0	1	13804	59	3	2		2	SACS	13	23906630	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		23906630	91263248	147	7453											
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23911630	23911630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.G6385A	p.G2129R	ATCTCCCATCTTT	.	94	4	131	0	.	298	T	23911630	C	T	23911630	3	4	51	1	0	0	0	0	1	0	0	0	13804	594	21	3	7358	3	SACS	13	23911630	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	5000	23911630	91258248	148	7454											
BRCA2	675	hgsc.bcm.edu;bcgsc.ca	37	13	32914823	32914823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BRCA2	NM_000059	exon11	c.A6331G	p.K2111E	GTTGATAAGAGAA	.	96	4	102	0	.	3153	G	32914823	A	G	32914823	3	3	51	1	0	0	0	0	1	0	0	0	1499	363	13	2	6369	2	BRCA2	13	32914823	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	9003193	32914823	82255055	149	7455											
KPNA3	3839	hgsc.bcm.edu;bcgsc.ca	37	13	50285129	50285129	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KPNA3	NM_002267	exon11	c.A801G	p.S267S	CAAGTATGACAGA	.	68	4	100	0	.	226	C	50285129	T	C	50285129	2	2	51	1	0	0	0	0	0	0	0	1	8431	1451	51	2		2	KPNA3	13	50285129	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	17370306	50285129	64884749	150	7456											
NALCN	259232	hgsc.bcm.edu;bcgsc.ca	37	13	102047689	102047689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NALCN	NM_052867	exon3	c.G136T	p.A46S	TGATGGCACAGAT	.	64	4	89	0	.	167	A	102047689	C	A	102047689	3	1	51	1	0	0	0	0	1	0	0	0	10148	710	25	3	5248	3	NALCN	13	102047689	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	51762560	102047689	13122189	151	7457											
LAMP1	3916	hgsc.bcm.edu;bcgsc.ca	37	13	113973926	113973926	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMP1	NM_005561	exon5	c.C705T	p.S235S	GGCCAGCATGGGG	.	35	4	43	0	.	514	T	113973926	C	T	113973926	2	4	51	1	0	0	0	0	0	0	0	1	8617	709	25	3		3	LAMP1	13	113973926	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	11926237	113973926	1195952	152	7458											
MMP14	4323	hgsc.bcm.edu;broad.mit.edu	37	14	23310816	23310816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MMP14	NM_004995	exon2	c.A225G	p.Q75Q	CTTGCAAGTAACA	.	44	4	48	0	.	226	G	23310816	A	G	23310816	2	3	51	1	0	0	0	0	0	0	0	1	9653	69	3	2		2	MMP14	14	23310816	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		23310816	84038724	153	7459											
LRRC16B	90668	hgsc.bcm.edu;bcgsc.ca	37	14	24533482	24533482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC16B	NM_138360	exon32	c.A3007G	p.N1003D	CAGGAGAATGGGA	.	56	4	51	0	.	139	G	24533482	A	G	24533482	3	3	51	1	0	0	0	0	1	0	0	0	8972	246	9	2	3133	2	LRRC16B	14	24533482	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1222666	24533482	82816058	154	7460											
KIAA0391	9692	hgsc.bcm.edu;bcgsc.ca	37	14	35596745	35596745	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0391	NM_014672	exon4	c.T1095C	p.Y365Y	AGAATATGAATGT	.	92	4	110	0	.	226	C	35596745	T	C	35596745	2	2	51	1	0	0	0	0	0	0	0	1	8172	1471	51	2		2	KIAA0391	14	35596745	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	11063263	35596745	71752795	155	7461											
DHRS7	51635	hgsc.bcm.edu;bcgsc.ca	37	14	60619873	60619873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHRS7	NM_016029	exon4	c.T417C	p.G139G	CATTCCACCATTG	.	102	5	123	0	.	91	G	60619873	A	G	60619873	2	3	51	1	0	0	0	0	0	0	0	1	4495	146	6	2		2	DHRS7	14	60619873	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	25023128	60619873	46729667	156	7462											
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91700443	91700443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR68	NM_001177676	exon2	c.G952A	p.E318K	AGGCCTCCCTGGC	.	23	6	18	0	.	91	T	91700443	C	T	91700443	3	4	51	1	0	0	0	0	1	0	0	0	6707	864	30	3	149	3	GPR68	14	91700443	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	31080570	91700443	15649097	157	7463											
HERC2	8924	hgsc.bcm.edu;bcgsc.ca	37	15	28493786	28493786	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HERC2	NM_004667	exon21	c.T3147C	p.A1049A	CAATGAAGCAGAT	.	82	4	125	0	.	234	G	28493786	A	G	28493786	2	3	51	1	0	0	0	0	0	0	0	1	7058	59	3	2		2	HERC2	15	28493786	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		28493786	74037606	158	7464											
TMEM87A	25963	hgsc.bcm.edu;bcgsc.ca	37	15	42531866	42531866	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM87A	NM_015497	exon9	c.684+2T>C	.	TCACTTACAATCA	.	82	4	99	0	.	91	G	42531866	A	G	42531866	5	3	51	1	0	0	0	0	0	0	1	0	16207	405	14	2	1033	2	TMEM87A	15	42531866	Splice_Site	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	14038080	42531866	59999526	159	7465											
SHF	90525	hgsc.bcm.edu;bcgsc.ca	37	15	45467612	45467612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHF	NM_138356	exon4	c.T457C	p.S153P	CCTTGGAGCCCCG	.	75	4	75	0	.	69	G	45467612	A	G	45467612	3	3	51	1	0	0	0	0	1	0	0	0	14277	304	11	2	834	2	SHF	15	45467612	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	2935746	45467612	57063780	160	7466											
SQRDL	58472	hgsc.bcm.edu;bcgsc.ca	37	15	45965905	45965905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SQRDL	NM_021199	exon5	c.A560G	p.E187G	TCAAAGAGGGCAA	.	109	5	130	0	.	91	G	45965905	A	G	45965905	3	3	51	1	0	0	0	0	1	0	0	0	15128	304	11	2	574	2	SQRDL	15	45965905	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	498293	45965905	56565487	161	7467											
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49935632	49935632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DTWD1	NM_001144955	exon5	c.C772T	p.L258L	TACTTTCTGGTAG	.	220	13	255	0	.	226	T	49935632	C	T	49935632	2	4	51	1	0	0	0	0	0	0	0	1	4791	912	32	3		3	DTWD1	15	49935632	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	3969727	49935632	52595760	162	7468											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72119321	72119321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO9A	NM_006901	exon42	c.G7247A	p.R2416Q	TGCTTTCGCAACT	.	59	7	59	0	.	93	T	72119321	C	T	72119321	3	4	51	1	0	0	0	0	1	0	0	0	10084	884	31	1	403	1	MYO9A	15	72119321	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	22183689	72119321	30412071	163	7469											
PKD1	5310	hgsc.bcm.edu;bcgsc.ca	37	16	2147400	2147400	+	Missense_Mutation	SNP	G	G	A	rs144593342	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD1	NM_001009944	exon33	c.C10325T	p.A3442V	TGGCCCGCCTGGC	.	18	4	31	0	G|0.998;A|0.002	91	A	2147400	G	A	2147400	3	1	51	1	0	0	0	0	1	0	0	0	11963	1087	38	1	2642	1	PKD1	16	2147400	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10		2147400	88207353	164	7470											
ADCY9	115	hgsc.bcm.edu;bcgsc.ca	37	16	4164949	4164949	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADCY9	NM_001116	exon2	c.C495A	p.T165T	CAGCTTGGTGAAG	.	50	4	70	0	.	139	T	4164949	G	T	4164949	2	4	51	1	0	0	0	0	0	0	0	1	301	1335	47	3		3	ADCY9	16	4164949	Silent	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	2017549	4164949	86189804	165	7471											
ABCC1	4363	ucsc.edu;bcgsc.ca	37	16	16228238	16228238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCC1	NM_004996	exon28	c.A3998G	p.K1333R	CTGGGAAGTCGTC	.	51	5	62	0	.	94	G	16228238	A	G	16228238	3	3	51	1	0	0	0	0	1	0	0	0	49	72	3	2	4108	2	ABCC1	16	16228238	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	12063289	16228238	74126515	166	7472											
LPCAT2	54947	ucsc.edu;bcgsc.ca	37	16	55563789	55563789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPCAT2	NM_017839	exon4	c.A572G	p.D191G	GTGTAGATCCGGA	.	64	6	69	0	.	90	G	55563789	A	G	55563789	3	3	51	1	0	0	0	0	1	0	0	0	8911	333	12	2	586	2	LPCAT2	16	55563789	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	39335551	55563789	34790964	167	7473											
NLRC5	84166	hgsc.bcm.edu;bcgsc.ca	37	16	57067552	57067552	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRC5	NM_032206	exon11	c.A2514G	p.K838K	GAGGAAAGGGGCT	.	70	4	67	0	.	159	G	57067552	A	G	57067552	2	3	51	1	0	0	0	0	0	0	0	1	10470	69	3	2		2	NLRC5	16	57067552	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1503763	57067552	33287201	168	7474											
CNGB1	1258	hgsc.bcm.edu;bcgsc.ca	37	16	57998104	57998104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNGB1	NM_001297	exon4	c.A220G	p.T74A	CCTTGGTCTCTGG	.	89	4	83	0	.	137	C	57998104	T	C	57998104	3	2	51	1	0	0	0	0	1	0	0	0	3600	1667	58	2	3685	2	CNGB1	16	57998104	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	930552	57998104	32356649	169	7475											
CTCF	10664	hgsc.bcm.edu;bcgsc.ca	37	16	67644896	67644896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CTCF	NM_006565	exon3	c.T161C	p.V54A	AGGATGTCAACAG	.	56	4	80	0	.	91	C	67644896	T	C	67644896	3	2	51	1	0	0	0	0	1	0	0	0	4000	1667	58	2	163	2	CTCF	16	67644896	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	9646792	67644896	22709857	170	7476											
NFATC3	4775	hgsc.bcm.edu;bcgsc.ca	37	16	68208375	68208375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFATC3	NM_173163	exon6	c.T1873C	p.F625L	TCTAATTTTCTTC	.	74	4	104	0	.	92	C	68208375	T	C	68208375	3	2	51	1	0	0	0	0	1	0	0	0	10364	1841	64	2	1895	2	NFATC3	16	68208375	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	563479	68208375	22146378	171	7477											
CHTF8	54921	hgsc.bcm.edu;bcgsc.ca	37	16	69154536	69154536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHTF8	NM_001039690	exon4	c.T158C	p.I53T	CCCACGATCAGCA	.	79	4	90	0	.	87	G	69154536	A	G	69154536	3	3	51	1	0	0	0	0	1	0	0	0	3415	333	12	2	211	2	CHTF8	16	69154536	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	946161	69154536	21200217	172	7478											
NIP7	51388	hgsc.bcm.edu;bcgsc.ca	37	16	69375544	69375544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NIP7	NM_016101	exon5	c.A532G	p.T178A	GAAGAGACGTTGA	.	84	5	137	0	.	153	G	69375544	A	G	69375544	3	3	51	1	0	0	0	0	1	0	0	0	10421	275	10	2	550	2	NIP7	16	69375544	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	221008	69375544	20979209	173	7479											
GLG1	2734	hgsc.bcm.edu;bcgsc.ca	37	16	74528672	74528672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLG1	NM_001145667	exon6	c.T1036C	p.S346P	TCATGGATTCTTC	.	88	4	94	0	.	136	G	74528672	A	G	74528672	3	3	51	1	0	0	0	0	1	0	0	0	6436	333	12	2	2667	2	GLG1	16	74528672	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5153128	74528672	15826081	174	7480											
ZFP1	162239	hgsc.bcm.edu;bcgsc.ca	37	16	75203861	75203861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFP1	NM_153688	exon4	c.A853G	p.T285A	CTCACCACACACC	.	81	4	118	0	.	92	G	75203861	A	G	75203861	3	3	51	1	0	0	0	0	1	0	0	0	17633	159	6	2	863	2	ZFP1	16	75203861	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	675189	75203861	15150892	175	7481											
PRPF8	10594	ucsc.edu;bcgsc.ca	37	17	1564444	1564444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRPF8	NM_006445	exon28	c.A4351G	p.N1451D	ACGGATTCTGCTT	.	46	4	71	0	.	525	C	1564444	T	C	1564444	3	2	51	1	0	0	0	0	1	0	0	0	12575	1783	62	2	2720	2	PRPF8	17	1564444	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		1564444	79630766	176	7482											
CAMTA2	23125	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	4883056	4883056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAMTA2	NM_001171167	exon9	c.A1630G	p.I544V	CAGGGATGCTTGG	.	42	4	91	0	.	91	C	4883056	T	C	4883056	3	2	51	1	0	0	0	0	1	0	0	0	2614	1464	51	2	2157	2	CAMTA2	17	4883056	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	3318612	4883056	76312154	177	7483											
TMEM95	339168	hgsc.bcm.edu;bcgsc.ca	37	17	7259191	7259191	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM95	NM_198154	exon3	c.T261C	p.Y87Y	TTCATATTGGAGT	.	72	4	130	0	.	90	C	7259191	T	C	7259191	2	2	51	1	0	0	0	0	0	0	0	1	16220	1500	52	2		2	TMEM95	17	7259191	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	2376135	7259191	73936019	178	7484											
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	17	27025001	27025001	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SUPT6H	NM_003170	exon32	c.A4401G	p.E1467E	CAAGGAACTGCCC	.	58	4	47	0	.	93	G	27025001	A	G	27025001	2	3	51	1	0	0	0	0	0	0	0	1	15397	40	2	2		2	SUPT6H	17	27025001	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	19765810	27025001	54170209	179	7485											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27414105	27414105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO18A	NM_078471	exon38	c.A5561T	p.K1854M	GTCAGCTTCTCCA	.	144	52	174	0	.	22	A	27414105	T	A	27414105	3	1	51	1	0	0	0	0	1	0	0	0	10065	1609	56	4	623	4	MYO18A	17	27414105	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	389104	27414105	53781105	180	7486											
AP2B1	163	hgsc.bcm.edu;bcgsc.ca	37	17	33925250	33925250	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP2B1	NM_001282	exon3	c.A39G	p.G13G	TGCAGGAGAAATA	.	85	4	110	0	.	91	G	33925250	A	G	33925250	2	3	51	1	0	0	0	0	0	0	0	1	741	318	11	2		2	AP2B1	17	33925250	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	6511145	33925250	47269960	181	7487											
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38179530	38179530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED24	NM_014815	exon20	c.C2104T	p.P702S	TGGGGGGCAGCAG	.	94	20	128	0	.	187	A	38179530	G	A	38179530	3	1	51	1	0	0	0	0	1	0	0	0	9442	1203	42	3	893	3	MED24	17	38179530	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	4254280	38179530	43015680	182	7488											
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40831707	40831707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCR10	NM_016602	exon2	c.G953A	p.R318H	TCCTGGCGGAAGC	.	63	20	59	0	.	522	T	40831707	C	T	40831707	3	4	51	1	0	0	0	0	1	0	0	0	2940	768	27	1	139	1	CCR10	17	40831707	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	2652177	40831707	40363503	183	7489											
NFE2L1	4779	hgsc.bcm.edu;bcgsc.ca	37	17	46128683	46128683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFE2L1	NM_003204	exon2	c.A203G	p.H68R	GTATCCACCCCAA	.	81	4	99	0	.	91	G	46128683	A	G	46128683	3	3	51	1	0	0	0	0	1	0	0	0	10367	159	6	2	205	2	NFE2L1	17	46128683	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5296976	46128683	35066527	184	7490											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901222	51901222	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF2B	NM_032559	exon1	c.C828T	p.N276N	CTCCAACGAGTTG	.	112	36	102	0	.	98	T	51901222	C	T	51901222	2	4	51	1	0	0	0	0	0	0	0	1	8298	535	19	1		1	KIF2B	17	51901222	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	5772539	51901222	29293988	185	7491											
MKS1	54903	hgsc.bcm.edu;bcgsc.ca	37	17	56290446	56290446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MKS1	NM_017777	exon8	c.A755G	p.E252G	TCCGTCTCAATCC	.	53	4	74	0	.	91	C	56290446	T	C	56290446	3	2	51	1	0	0	0	0	1	0	0	0	9609	1551	54	2	968	2	MKS1	17	56290446	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	4389224	56290446	24904764	186	7492											
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56586080	56586080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MTMR4	NM_004687	exon6	c.T416C	p.L139P	TCGGTCAGCCCCA	.	86	26	118	0	.	91	G	56586080	A	G	56586080	3	3	51	1	0	0	0	0	1	0	0	0	9946	188	7	2	3227	2	MTMR4	17	56586080	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	295634	56586080	24609130	187	7493											
C17orf64	124773	hgsc.bcm.edu;bcgsc.ca	37	17	58508620	58508620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C17orf64	NM_181707	exon6	c.A704G	p.E235G	AGACTGAACCGTA	.	84	5	109	0	.	271	G	58508620	A	G	58508620	3	3	51	1	0	0	0	0	1	0	0	0	1872	246	9	2	726	2	C17orf64	17	58508620	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	1922540	58508620	22686590	188	7494											
FTSJ3	117246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61902423	61902423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FTSJ3	NM_017647	exon8	c.T696C	p.T232T	CTTCTTAGTAACC	.	86	5	98	0	.	91	G	61902423	A	G	61902423	2	3	51	1	0	0	0	0	0	0	0	1	6089	407	15	2		2	FTSJ3	17	61902423	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	3393803	61902423	19292787	189	7495											
SMARCD2	6603	hgsc.bcm.edu;bcgsc.ca	37	17	61914400	61914400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMARCD2	NM_001098426	exon4	c.G449A	p.R150Q	AGCTCCCGGATCT	.	71	4	77	0	.	227	T	61914400	C	T	61914400	3	4	51	1	0	0	0	0	1	0	0	0	14778	652	23	1	1186	1	SMARCD2	17	61914400	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	11977	61914400	19280810	190	7496											
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66873815	66873815	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon31	c.A3924G	p.L1308L	TTTCAGTAGCACC	.	62	4	95	0	.	93	C	66873815	T	C	66873815	2	2	51	1	0	0	0	0	0	0	0	1	38	1625	57	2		2	ABCA8	17	66873815	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	4959415	66873815	14321395	191	7497											
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66890418	66890418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon21	c.A2812G	p.R938G	TCAATCTTTTGGC	.	80	4	71	0	.	93	C	66890418	T	C	66890418	3	2	51	1	0	0	0	0	1	0	0	0	38	1617	56	2	2005	2	ABCA8	17	66890418	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	16603	66890418	14304792	192	7498											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77075681	77075681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ENGASE	NM_001042573	exon4	c.G527C	p.W176S	TGGGCTGGACCAA	.	124	52	123	0	.	91	C	77075681	G	C	77075681	3	2	51	1	0	0	0	0	1	0	0	0	5118	1357	47	4	541	4	ENGASE	17	77075681	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	10185263	77075681	4119529	193	7499											
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79234066	79234066	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC38A10	NM_001037984	exon11	c.G1260A	p.L420L	CTTCATCAAACCC	.	50	17	63	0	.	70	T	79234066	C	T	79234066	2	4	51	1	0	0	0	0	0	0	0	1	14602	825	29	3		3	SLC38A10	17	79234066	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	2158385	79234066	1961144	194	7500											
GNAL	2774	hgsc.bcm.edu;bcgsc.ca	37	18	11862404	11862404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNAL	NM_182978	exon6	c.A733G	p.R245G	CTGGAAAGAATCG	.	76	6	88	0	.	228	G	11862404	A	G	11862404	3	3	51	1	0	0	0	0	1	0	0	0	6507	64	3	2	904	2	GNAL	18	11862404	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		11862404	66214844	195	7501											
MC5R	4161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13826628	13826628	+	Silent	SNP	C	C	T	rs142287236	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MC5R	NM_005913	exon1	c.C864T	p.S288S	TAATTCCGTGATG	.	311	41	360	1	C|1.000;T|0.000	526	T	13826628	C	T	13826628	2	4	51	1	0	0	0	0	0	0	0	1	9367	639	23	1		1	MC5R	18	13826628	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	1964224	13826628	64250620	196	7502											
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29790544	29790544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEP1B	NM_005925	exon10	c.C1000A	p.P334T	CTGTACCCTAAAA	.	58	25	82	0	.	92	A	29790544	C	A	29790544	3	1	51	1	0	0	0	0	1	0	0	0	9476	623	22	3	1038	3	MEP1B	18	29790544	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	15963916	29790544	48286704	197	7503											
C18orf54	162681	hgsc.bcm.edu;bcgsc.ca	37	18	51889221	51889221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C18orf54	NM_173529	exon4	c.A670G	p.K224E	ATGAAAAAGGATG	.	81	4	101	0	.	92	G	51889221	A	G	51889221	3	3	51	1	0	0	0	0	1	0	0	0	1904	15	1	2	680	2	C18orf54	18	51889221	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	22098677	51889221	26188027	198	7504											
PHLPP1	23239	hgsc.bcm.edu;bcgsc.ca	37	18	60642674	60642674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_194449	exon16	c.T3800C	p.L1267P	CTGTCCTTTGTCA	.	141	6	145	0	.	.	C	60642674	T	C	60642674	3	2	51	1	0	0	0	0	1	0	0	0	11854	1609	56	2	3862	2	PHLPP1	18	60642674	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	8753453	60642674	17434574	199	7505											
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72998514	72998514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TSHZ1	NM_005786	exon2	c.A1017G	p.K339K	TCAGAAAGCAGCG	.	66	5	97	0	.	90	G	72998514	A	G	72998514	2	3	51	1	0	0	0	0	0	0	0	1	16620	69	3	2		2	TSHZ1	18	72998514	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	12355840	72998514	5078734	200	7506											
C19orf21	126353	hgsc.bcm.edu;bcgsc.ca	37	19	758323	758323	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C19orf21	NM_173481	exon2	c.T1377C	p.T459T	TGCGACTTCACCA	.	81	4	75	0	.	91	C	758323	T	C	758323	2	2	51	1	0	0	0	0	0	0	0	1	1913	1596	56	2		2	C19orf21	19	758323	Silent	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		758323	58370660	201	7507											
SAFB	6294	hgsc.bcm.edu;bcgsc.ca	37	19	5654111	5654111	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SAFB	NM_002967	exon12	c.A1566G	p.K522K	CAGAAAAGATGAT	.	66	4	91	0	.	228	G	5654111	A	G	5654111	2	3	51	1	0	0	0	0	0	0	0	1	13806	69	3	2		2	SAFB	19	5654111	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	4895788	5654111	53474872	202	7508											
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15067448	15067448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC1A6	NM_005071	exon6	c.G1009A	p.G337S	GCTGACCCCCCAG	.	84	8	109	0	.	186	T	15067448	C	T	15067448	3	4	51	1	0	0	0	0	1	0	0	0	14436	623	22	3	701	3	SLC1A6	19	15067448	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	9413337	15067448	44061535	203	7509											
RASAL3	64926	hgsc.bcm.edu;bcgsc.ca	37	19	15569377	15569377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_022904	exon7	c.T752C	p.L251P	GGGTGCAGTGGCC	.	95	6	113	0	.	.	G	15569377	A	G	15569377	3	3	51	1	0	0	0	0	1	0	0	0	13065	188	7	2	2331	2	RASAL3	19	15569377	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	501929	15569377	43559606	204	7510											
SIN3B	23309	hgsc.bcm.edu;bcgsc.ca	37	19	16952755	16952755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIN3B	NM_015260	exon4	c.C558A	p.F186L	GTCATTCCTGGAG	.	143	6	168	0	.	228	A	16952755	C	A	16952755	3	1	51	1	0	0	0	0	1	0	0	0	14326	854	30	3	572	3	SIN3B	19	16952755	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	1383378	16952755	42176228	205	7511											
MEGF8	1954	hgsc.bcm.edu;bcgsc.ca	37	19	42874933	42874933	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEGF8	NM_001271938	exon40	c.A7086G	p.K2362K	GGAGAAATGCGAG	.	80	4	66	0	.	23	G	42874933	A	G	42874933	2	3	51	1	0	0	0	0	0	0	0	1	9463	98	4	2		2	MEGF8	19	42874933	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	25922178	42874933	16254050	206	7512											
TEX101	83639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43920080	43920080	+	Silent	SNP	C	C	T	rs149972012		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEX101	NM_031451	exon5	c.C63T	p.T21T	GGGAACCCCTCGT	.	158	70	192	0	C|1.000;T|0.000	91	T	43920080	C	T	43920080	2	4	51	1	0	0	0	0	0	0	0	1	15770	610	22	3		3	TEX101	19	43920080	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	1045147	43920080	15208903	207	7513											
VSTM1	284415	hgsc.bcm.edu;bcgsc.ca	37	19	54545427	54545427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM1	NM_198481	exon6	c.A511G	p.K171E	ACCTCTTGGTGGA	.	92	4	123	0	.	90	C	54545427	T	C	54545427	3	2	51	1	0	0	0	0	1	0	0	0	17225	1821	63	2	215	2	VSTM1	19	54545427	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	10625347	54545427	4583556	208	7514											
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56565030	56565030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRP5	NM_153447	exon13	c.C3155T	p.A1052V	CCGCCGCGTGCTG	.	151	21	131	1	.	162	T	56565030	C	T	56565030	3	4	51	1	0	0	0	0	1	0	0	0	10480	768	27	1	3205	1	NLRP5	19	56565030	Missense_Mutation	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	2019603	56565030	2563953	209	7515											
ZNF470	388566	hgsc.bcm.edu;bcgsc.ca	37	19	57088312	57088312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF470	NM_001001668	exon6	c.A515G	p.D172G	AAAGAGATCACTC	.	132	6	156	0	.	92	G	57088312	A	G	57088312	3	3	51	1	0	0	0	0	1	0	0	0	17926	333	12	2	529	2	ZNF470	19	57088312	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	523282	57088312	2040671	210	7516											
SPTLC3	55304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13071736	13071736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTLC3	NM_018327	exon5	c.T613A	p.L205M	GGCACCTTGGATA	.	157	53	201	0	.	90	A	13071736	T	A	13071736	3	1	51	1	0	0	0	0	1	0	0	0	15124	1606	56	4	631	4	SPTLC3	20	13071736	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		13071736	49953784	211	7517											
MACROD2	140733	hgsc.bcm.edu;bcgsc.ca	37	20	15967784	15967784	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MACROD2	NM_080676	exon15	c.A1134G	p.E378E	CCAAGAAGAAAAA	.	78	4	91	0	.	22	G	15967784	A	G	15967784	2	3	51	1	0	0	0	0	0	0	0	1	9146	69	3	2		2	MACROD2	20	15967784	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	2896048	15967784	47057736	212	7518											
SLC12A5	57468	hgsc.bcm.edu;bcgsc.ca	37	20	44685068	44685068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC12A5	NM_001134771	exon23	c.A3044G	p.E1015G	GGGAGGAGCCTGA	.	87	4	80	0	.	156	G	44685068	A	G	44685068	3	3	51	1	0	0	0	0	1	0	0	0	14386	304	11	2	3190	2	SLC12A5	20	44685068	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	28717284	44685068	18340452	213	7519											
CASS4	57091	hgsc.bcm.edu;bcgsc.ca	37	20	55025710	55025710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASS4	NM_020356	exon4	c.T617C	p.L206P	CAGGACTCCATCC	.	91	5	120	0	.	25	C	55025710	T	C	55025710	3	2	51	1	0	0	0	0	1	0	0	0	2683	1551	54	2	631	2	CASS4	20	55025710	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	10340642	55025710	7999810	214	7520											
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62729930	62729930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OPRL1	NM_000913	exon4	c.C891T	p.A297A	GACTGCCGTGGCC	.	96	38	104	0	.	69	T	62729930	C	T	62729930	2	4	51	1	0	0	0	0	0	0	0	1	10886	639	23	1		1	OPRL1	20	62729930	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10	7704220	62729930	295590	215	7521											
CXADR	1525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	18933790	18933790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXADR	NM_001207066	exon6	c.A829G	p.I277V	CACGATATCAGGT	.	179	11	240	0	.	227	G	18933790	A	G	18933790	3	3	51	1	0	0	0	0	1	0	0	0	4076	449	16	2	851	2	CXADR	21	18933790	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10		18933790	29196105	216	7522											
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31692292	31692292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRTAP26-1	NM_203405	exon1	c.A62C	p.H21P	GGAATATGGCGGG	.	109	16	136	0	.	69	G	31692292	T	G	31692292	3	3	51	1	0	0	0	0	1	0	0	0	8543	1464	51	5	574	5	KRTAP26-1	21	31692292	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	12758502	31692292	16437603	217	7523											
PKNOX1	5316	hgsc.bcm.edu;bcgsc.ca	37	21	44430256	44430256	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKNOX1	NM_004571	exon4	c.A273G	p.V91V	TGATGTAGACATC	.	53	4	66	0	.	153	G	44430256	A	G	44430256	2	3	51	1	0	0	0	0	0	0	0	1	11982	407	15	2		2	PKNOX1	21	44430256	Silent	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	12737964	44430256	3699639	218	7524											
SIK1	150094	hgsc.bcm.edu;bcgsc.ca	37	21	44838374	44838374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIK1	NM_173354	exon12	c.A1510G	p.S504G	CAGAGCTGGTTCC	.	69	5	85	0	.	346	C	44838374	T	C	44838374	3	2	51	1	0	0	0	0	1	0	0	0	14317	1580	55	2	853	2	SIK1	21	44838374	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	408118	44838374	3291521	219	7525											
CDC45	8318	hgsc.bcm.edu;bcgsc.ca	37	22	19502321	19502321	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDC45	NM_001178010	exon15	c.C1363T	p.L455L	AAGCAGCTGCGAG	.	59	4	74	0	.	227	T	19502321	C	T	19502321	2	4	51	1	0	0	0	0	0	0	0	1	3081	796	28	3		3	CDC45	22	19502321	Silent	SNP	C	TCGA-DD-A119-01A-11D-A12Z-10		19502321	31802245	220	7526											
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26771552	26771552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEZ6L	NM_021115	exon15	c.G2839T	p.A947S	GAAGCGGCAGCAG	.	64	26	114	0	.	95	T	26771552	G	T	26771552	3	4	51	1	0	0	0	0	1	0	0	0	14143	1203	42	3	2897	3	SEZ6L	22	26771552	Missense_Mutation	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	7269231	26771552	24533014	221	7527											
UQCR10	29796	hgsc.bcm.edu;bcgsc.ca	37	22	30165668	30165668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UQCR10	NM_013387	exon2	c.A152G	p.K51R	TGCAGAAGCTGTG	.	134	6	154	0	.	23	G	30165668	A	G	30165668	3	3	51	1	0	0	0	0	1	0	0	0	17013	86	3	2	197	2	UQCR10	22	30165668	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	3394116	30165668	21138898	222	7528											
PES1	23481	hgsc.bcm.edu;bcgsc.ca	37	22	30975865	30975865	+	Silent	SNP	G	G	T	rs140808409	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PES1	NM_014303	exon12	c.C1227A	p.P409P	TGCCACGGGGAGA	.	81	6	79	0	G|0.980;A|0.020	90	T	30975865	G	T	30975865	2	4	51	1	0	0	0	0	0	0	0	1	11733	1103	39	1		1	PES1	22	30975865	Silent	SNP	G	TCGA-DD-A119-01A-11D-A12Z-10	810197	30975865	20328701	223	7529											
HMGXB4	10042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35661108	35661108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HMGXB4	NM_001003681	exon5	c.A727G	p.S243G	TTACAGAGCTTTC	.	132	16	142	0	.	272	G	35661108	A	G	35661108	3	3	51	1	0	0	0	0	1	0	0	0	7239	304	11	2	741	2	HMGXB4	22	35661108	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	4685243	35661108	15643458	224	7530											
GPR143	4935	hgsc.bcm.edu;bcgsc.ca	37	X	9711666	9711666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR143	NM_000273	exon6	c.A706G	p.R236G	TCCTCCTCTCGTT	.	70	4	67	0	.	131	C	9711666	T	C	9711666	3	2	51	1	0	0	0	0	1	0	0	0	6651	1550	54	2	524	2	GPR143	23	9711666	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10		9711666	145558894	225	7531											
TLR8	51311	hgsc.bcm.edu;bcgsc.ca	37	X	12938298	12938298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TLR8	NM_138636	exon2	c.A1139G	p.Q380R	TGTTCCAGGAACT	.	59	4	63	0	.	629	G	12938298	A	G	12938298	3	3	51	1	0	0	0	0	1	0	0	0	15954	188	7	2	1145	2	TLR8	23	12938298	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	3226632	12938298	142332262	226	7532											
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32366626	32366626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DMD	NM_004006	exon38	c.A5345G	p.E1782G	TCCAATTCCTTCA	.	74	5	106	0	.	265	C	32366626	T	C	32366626	3	2	51	1	0	0	0	0	1	0	0	0	4580	1783	62	2	6028	2	DMD	23	32366626	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	19428328	32366626	122903934	227	7533											
GRIPAP1	56850	ucsc.edu;bcgsc.ca	37	X	48853705	48853705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GRIPAP1	NM_020137	exon5	c.A263G	p.D88G	CGGAAGTCCTCCT	.	33	4	35	0	.	227	C	48853705	T	C	48853705	3	2	51	1	0	0	0	0	1	0	0	0	6789	1667	58	2	2404	2	GRIPAP1	23	48853705	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	16487079	48853705	106416855	228	7534											
ZC3H12B	340554	hgsc.bcm.edu;bcgsc.ca	37	X	64709115	64709115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZC3H12B	NM_001010888	exon1	c.T434C	p.L145P	CAGAGCTTGTCAG	.	74	4	78	0	.	131	C	64709115	T	C	64709115	3	2	51	1	0	0	0	0	1	0	0	0	17559	1609	56	2	436	2	ZC3H12B	23	64709115	Missense_Mutation	SNP	T	TCGA-DD-A119-01A-11D-A12Z-10	15855410	64709115	90561445	229	7535											
TAF1	6872	hgsc.bcm.edu;bcgsc.ca	37	X	70601683	70601683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAF1	NM_004606	exon9	c.A1511G	p.N504S	AGGACAATATCAT	.	70	4	111	0	.	900	G	70601683	A	G	70601683	3	3	51	1	0	0	0	0	1	0	0	0	15510	101	4	2	1545	2	TAF1	23	70601683	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	5892568	70601683	84668877	230	7536											
DACH2	117154	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	86069720	86069720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DACH2	NM_053281	exon10	c.A1567G	p.K523E	AAGGAGAAAAAAA	.	46	4	41	0	.	136	G	86069720	A	G	86069720	3	3	51	1	0	0	0	0	1	0	0	0	4221	247	9	2	1605	2	DACH2	23	86069720	Missense_Mutation	SNP	A	TCGA-DD-A119-01A-11D-A12Z-10	15468037	86069720	69200840	231	7537											
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	4772503	4772503	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AJAP1	NM_018836	exon2	c.C573G	p.A191A	GGAGGCCCTGGAG	.	29	11	10	0	.	515	G	4772503	C	G	4772503	2	3	52	1	0	0	0	0	0	0	0	1	438	610	22	4		4	AJAP1	1	4772503	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		4772503	244478118	1	7538											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11169374	11169374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MTOR	NM_004958	exon56	c.A7501T	p.I2501F	TGTTAATAATCTG	.	119	9	92	0	.	1439	A	11169374	T	A	11169374	3	1	52	1	0	0	0	0	1	0	0	0	9954	1406	49	4	160	4	MTOR	1	11169374	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	6396871	11169374	238081247	2	7539											
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32151735	32151735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL16A1	NM_001856	exon28	c.G1841A	p.G614E	GGTGGCCCCTGCA	.	126	70	85	0	.	98	T	32151735	C	T	32151735	3	4	52	1	0	0	0	0	1	0	0	0	3673	637	22	3	3149	3	COL16A1	1	32151735	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	20982361	32151735	217098886	3	7540											
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	35852772	35852772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM4	NM_005095	exon12	c.C2005T	p.L669F	CAGCGTCTCGCTG	.	87	8	68	0	.	291	T	35852772	C	T	35852772	3	4	52	1	0	0	0	0	1	0	0	0	17699	913	32	3	2051	3	ZMYM4	1	35852772	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	3701037	35852772	213397849	4	7541											
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	36565805	36565805	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL8A2	NM_005202	exon1	c.G39A	p.L13L	TAGCAGCAGCAGC	.	25	14	9	0	.	90	T	36565805	C	T	36565805	2	4	52	1	0	0	0	0	0	0	0	1	3706	697	25	3		3	COL8A2	1	36565805	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	713033	36565805	212684816	5	7542											
ST3GAL3	6487	ucsc.edu;bcgsc.ca	37	1	44363938	44363938	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ST3GAL3	NM_174963	exon8	c.C636A	p.T212T	AGTCACCAAAGAG	.	39	4	28	0	.	93	A	44363938	C	A	44363938	2	1	52	1	0	0	0	0	0	0	0	1	15215	581	21	3		3	ST3GAL3	1	44363938	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	7798133	44363938	204886683	6	7543											
INSL5	10022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	67266850	67266850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	INSL5	NM_005478	exon1	c.G55T	p.E19X	GCACTTCTGAGAT	.	58	25	64	0	.	90	A	67266850	C	A	67266850	4	1	52	1	0	0	0	0	0	1	0	0	7769	922	32	3	360	3	INSL5	1	67266850	Nonsense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	22902912	67266850	181983771	7	7544											
DEPDC1	55635	hgsc.bcm.edu;broad.mit.edu	37	1	68955231	68955232	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DEPDC1	NM_017779	exon3	c.375_376insA	p.N125fs	TATGTTGTTTTTT	.	333	29	157	0	.	90	T	68955232	-	T	68955231	7	5	52	1	0	1	1	0	0	0	0	0	4439	1368	48	0	2100	0	DEPDC1	1	68955231	Frame_Shift_Ins	INS	-	TCGA-DD-A11A-01A-11D-A12Z-10	1688381	68955231	180295390	8	7545											
ANKRD13C	81573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70740488	70740488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD13C	NM_030816	exon11	c.G1309C	p.G437R	CTCTACCCAGATG	.	141	26	79	0	.	90	G	70740488	C	G	70740488	3	3	52	1	0	0	0	0	1	0	0	0	643	623	22	4	328	4	ANKRD13C	1	70740488	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	1785257	70740488	178510133	9	7546											
UBE2Q1	55585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154527970	154527970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UBE2Q1	NM_017582	exon3	c.T471G	p.C157W	GAGTTTACACAGG	.	126	50	66	0	.	226	C	154527970	A	C	154527970	3	2	52	1	0	0	0	0	1	0	0	0	16866	389	14	5	841	5	UBE2Q1	1	154527970	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	83787482	154527970	94722651	10	7547											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164781342	164781342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PBX1	NM_001204963	exon6	c.C953A	p.A318D	TGTCAGCCCATGG	.	180	26	87	0	.	659	A	164781342	C	A	164781342	3	1	52	1	0	0	0	0	1	0	0	0	11492	739	26	3	975	3	PBX1	1	164781342	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	10253372	164781342	84469279	11	7548											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179631316	179631316	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD5	NM_001199085	exon15	c.T2400A	p.P800P	GTTACCTCTACAG	.	76	43	36	0	.	94	A	179631316	T	A	179631316	2	1	52	1	0	0	0	0	0	0	0	1	15730	1538	54	4		4	TDRD5	1	179631316	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	14849974	179631316	69619305	12	7549											
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183111719	183111719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LAMC1	NM_002293	exon28	c.C4624G	p.L1542V	GGCACCCTAAACA	.	51	8	20	0	.	252	G	183111719	C	G	183111719	3	3	52	1	0	0	0	0	1	0	0	0	8614	680	24	4	4734	4	LAMC1	1	183111719	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	3480403	183111719	66138902	13	7550											
CNTN2	6900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205039578	205039578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNTN2	NM_005076	exon19	c.T2456C	p.V819A	CCAAGGTGTGGGC	.	35	7	21	0	.	91	C	205039578	T	C	205039578	3	2	52	1	0	0	0	0	1	0	0	0	3641	1696	59	2	2526	2	CNTN2	1	205039578	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	21927859	205039578	44211043	14	7551											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207789962	207789962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CR1	NM_000651	exon41	c.A6704T	p.H2235L	GGAGACACACAGG	.	173	42	111	0	.	93	T	207789962	A	T	207789962	3	4	52	1	0	0	0	0	1	0	0	0	3840	159	6	4	6866	4	CR1	1	207789962	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	2750384	207789962	41460659	15	7552											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228511096	228511096	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OBSCN	NM_001271223	exon67	c.C18312T	p.C6104C	TGACTGCGTGGTG	.	141	27	54	0	.	403	T	228511096	C	T	228511096	2	4	52	1	0	0	0	0	0	0	0	1	10812	776	27	1		1	OBSCN	1	228511096	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	20721134	228511096	20739525	16	7553											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	GTCCGCGCGAAGT	.	97	72	46	0	.	25	A	245862258	G	A	245862258	3	1	52	1	0	0	0	0	1	0	0	0	8295	1087	38	1	6151	1	KIF26B	1	245862258	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	17351162	245862258	3388363	17	7554											
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248112614	248112614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2L8	NM_001001963	exon1	c.C455A	p.S152X	TAGGCTCGATCAA	.	529	117	156	0	.	70	A	248112614	C	A	248112614	4	1	52	1	0	0	0	0	0	1	0	0	11009	893	31	1	457	1	OR2L8	1	248112614	Nonsense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	2250356	248112614	1138007	18	7555											
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248436686	248436686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2T33	NM_001004695	exon1	c.T431C	p.M144T	CACGACATGGTCA	.	647	176	175	0	.	114	G	248436686	A	G	248436686	3	3	52	1	0	0	0	0	1	0	0	0	11024	217	8	2	534	2	OR2T33	1	248436686	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	324072	248436686	813935	19	7556											
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10132262	10132262	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRHL1	NM_198182	exon11	c.G1449A	p.Q483Q	CTTGCAGCGGGGC	.	162	65	66	0	.	92	A	10132262	G	A	10132262	2	1	52	1	0	0	0	0	0	0	0	1	6763	962	34	3		3	GRHL1	2	10132262	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		10132262	233067111	20	7557											
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32466120	32466120	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRC4	NM_001199138	exon5	c.G2332C	p.E778Q	CATCTTCTTCATT	.	130	14	54	0	.	276	G	32466120	C	G	32466120	3	3	52	1	0	0	0	0	1	0	0	0	10469	922	32	4	762	4	NLRC4	2	32466120	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	22333858	32466120	210733253	21	7558											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	121726310	121726310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLI2	NM_005270	exon5	c.C664T	p.R222W	AGCCCGCGGGTGA	.	102	11	30	0	.	954	T	121726310	C	T	121726310	3	4	52	1	0	0	0	0	1	0	0	0	6438	759	27	1	682	1	GLI2	2	121726310	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	89260190	121726310	121473063	22	7559											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137928455	137928455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	THSD7B	.	.	.	.	ATCATGGAAAATG	.	136	27	63	0	.	75	A	137928455	G	A	137928455	3	1	52	1	0	0	0	0	1	0	0	0	15877	1174	41	3	1599	3	THSD7B	2	137928455	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	16202145	137928455	105270918	23	7560											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141264466	141264466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRP1B	NM_018557	exon53	c.A8420C	p.E2807A	GCATTTTCATCAC	.	185	79	99	0	.	311	G	141264466	T	G	141264466	3	3	52	1	0	0	0	0	1	0	0	0	8955	1783	62	5	5535	5	LRP1B	2	141264466	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	3336011	141264466	101934907	24	7561											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152552146	152552146	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NEB	NM_004543	exon18	c.C1620G	p.P540P	ATCAGGGGGGATA	.	167	16	111	0	.	145	C	152552146	G	C	152552146	2	2	52	1	0	0	0	0	0	0	0	1	10302	1219	43	4		4	NEB	2	152552146	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	11287680	152552146	90647227	25	7562											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179588199	179588199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon74	c.G21628A	p.V7210M	AAACCACACAGGT	.	118	38	93	0	.	636	T	179588199	C	T	179588199	3	4	52	1	0	0	0	0	1	0	0	0	16732	478	17	3	83057	3	TTN	2	179588199	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	27036053	179588199	63611174	26	7563											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179638382	179638382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon32	c.G7401T	p.K2467N	TGACACCTTACAT	.	263	15	126	0	.	636	A	179638382	C	A	179638382	3	1	52	1	0	0	0	0	1	0	0	0	16732	680	24	3	103911	3	TTN	2	179638382	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	50183	179638382	63560991	27	7564											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179659228	179659228	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon8	c.C1296G	p.A432A	ATCAACGGCAGCA	.	100	38	71	0	.	636	C	179659228	G	C	179659228	2	2	52	1	0	0	0	0	0	0	0	1	16732	1103	39	4		4	TTN	2	179659228	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	20846	179659228	63540145	28	7565											
IGFBP2	3485	ucsc.edu;bcgsc.ca	37	2	217526707	217526707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IGFBP2	NM_000597	exon3	c.T799C	p.Y267H	GGCCTGTACAACC	.	28	4	30	0	.	946	C	217526707	T	C	217526707	3	2	52	1	0	0	0	0	1	0	0	0	7579	1638	57	2	809	2	IGFBP2	2	217526707	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	37867479	217526707	25672666	29	7566											
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9754230	9754230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPNE9	.	.	.	.	GGGGTGTACCAGG	.	35	5	34	0	.	70	C	9754230	T	C	9754230	3	2	52	1	0	0	0	0	1	0	0	0	3819	1638	57	2	409	2	CPNE9	3	9754230	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10		9754230	188268200	30	7567											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25665077	25665077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP2B	NM_001068	exon21	c.C2641T	p.P881S	AGTTGGGTAGTTT	.	277	65	135	0	.	273	A	25665077	G	A	25665077	3	1	52	1	0	0	0	0	1	0	0	0	16363	1261	44	3	2288	3	TOP2B	3	25665077	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	15910847	25665077	172357353	31	7568											
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25835782	25835782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OXSM	NM_017897	exon3	c.G1177T	p.V393F	GGGGCAGTCGAGG	.	122	18	89	0	.	132	T	25835782	G	T	25835782	3	4	52	1	0	0	0	0	1	0	0	0	11335	1029	36	3	1183	3	OXSM	3	25835782	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	170705	25835782	172186648	32	7569											
PRSS50	29122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46755769	46755769	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRSS50	NM_013270	exon4	c.C693T	p.D231D	CACATAGTCCGTG	.	86	61	50	0	.	90	A	46755769	G	A	46755769	2	1	52	1	0	0	0	0	0	0	0	1	12631	1020	36	3		3	PRSS50	3	46755769	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	20919987	46755769	151266661	33	7570											
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47371491	47371491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL18	NM_025010	exon4	c.T452C	p.M151T	CAATGATGTGTGC	.	123	19	49	0	.	90	C	47371491	T	C	47371491	3	2	52	1	0	0	0	0	1	0	0	0	8373	1464	51	2	466	2	KLHL18	3	47371491	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	615722	47371491	150650939	34	7571											
AMIGO3	386724	broad.mit.edu;ucsc.edu	37	3	49756547	49756547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AMIGO3	NM_198722	exon1	c.T352C	p.S118P	TGTTAGATGATAG	.	46	4	20	0	.	91	G	49756547	A	G	49756547	3	3	52	1	0	0	0	0	1	0	0	0	577	333	12	2	1166	2	AMIGO3	3	49756547	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	2385056	49756547	148265883	35	7572											
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49936589	49936589	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MST1R	NM_001244937	exon2	c.A1338G	p.V446V	GACCTGTACTGGT	.	109	12	63	0	.	1406	C	49936589	T	C	49936589	2	2	52	1	0	0	0	0	0	0	0	1	9891	1625	57	2		2	MST1R	3	49936589	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	180042	49936589	148085841	36	7573											
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	63975996	63975996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATXN7	NM_000333	exon10	c.G1506T	p.E502D	AGAAGAGTCTGTT	.	110	19	57	0	.	90	T	63975996	G	T	63975996	3	4	52	1	0	0	0	0	1	0	0	0	1215	1020	36	3	1604	3	ATXN7	3	63975996	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	14039407	63975996	134046434	37	7574											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64084858	64084858	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRICKLE2	NM_198859	exon8	c.C2404A	p.R802R	CGTATCGCAGGCG	.	119	19	80	0	.	95	T	64084858	G	T	64084858	2	4	52	1	0	0	0	0	0	0	0	1	12487	1095	38	1		1	PRICKLE2	3	64084858	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	108862	64084858	133937572	38	7575											
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118649063	118649063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IGSF11	NM_001015887	exon2	c.C112A	p.Q38K	CTGGCTGACCCCG	.	121	7	62	0	.	90	T	118649063	G	T	118649063	3	4	52	1	0	0	0	0	1	0	0	0	7598	1299	45	3	1207	3	IGSF11	3	118649063	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	54564205	118649063	79373367	39	7576											
GSK3B	2932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	119635000	119635000	+	Nonsense_Mutation	SNP	G	G	A	rs201787969		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GSK3B	NM_002093	exon5	c.C499T	p.R167X	AACTTCGGAACAG	.	77	8	47	0	.	978	A	119635000	G	A	119635000	4	1	52	1	0	0	0	0	0	1	0	0	6824	1124	39	1	834	1	GSK3B	3	119635000	Nonsense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	985937	119635000	78387430	40	7577											
DNAJB8	165721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	128181899	128181899	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAJB8	NM_153330	exon3	c.C190T	p.L64L	CATACAGGGAGCG	.	120	14	56	0	.	226	A	128181899	G	A	128181899	2	1	52	1	0	0	0	0	0	0	0	1	4626	991	35	3		3	DNAJB8	3	128181899	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	8546899	128181899	69840531	41	7578											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129303388	129303388	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLXND1	NM_015103	exon6	c.C1869T	p.I623I	GCCCGAGATCTGC	.	92	41	35	0	.	90	A	129303388	G	A	129303388	2	1	52	1	0	0	0	0	0	0	0	1	12127	932	33	3		3	PLXND1	3	129303388	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	1121489	129303388	68719042	42	7579											
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133673915	133673915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLCO2A1	NM_005630	exon4	c.G520A	p.V174M	CAACCACCATCAG	.	131	56	59	0	.	90	T	133673915	C	T	133673915	3	4	52	1	0	0	0	0	1	0	0	0	14726	507	18	3	1455	3	SLCO2A1	3	133673915	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	4370527	133673915	64348515	43	7580											
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169846627	169846627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHC3	NM_024947	exon8	c.C1633G	p.Q545E	GGCCCTGGGACAG	.	86	31	64	0	.	227	C	169846627	G	C	169846627	3	2	52	1	0	0	0	0	1	0	0	0	11818	1357	47	4	1386	4	PHC3	3	169846627	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	36172712	169846627	28175803	44	7581											
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	15601277	15601277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CC2D2A	NM_001080522	exon37	c.A4622G	p.D1541G	GAGAAGATGTAGA	.	273	20	109	0	.	25	G	15601277	A	G	15601277	3	3	52	1	0	0	0	0	1	0	0	0	2728	333	12	2	4963	2	CC2D2A	4	15601277	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10		15601277	175552999	45	7582											
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	23815325	23815325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPARGC1A	NM_013261	exon8	c.G1781T	p.R594I	GAGGATCTACTGC	.	52	9	52	0	.	230	A	23815325	C	A	23815325	3	1	52	1	0	0	0	0	1	0	0	0	12300	913	32	3	639	3	PPARGC1A	4	23815325	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	8214048	23815325	167338951	46	7583											
PCDH7	5099	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	31144428	31144428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCDH7	NM_001173523	exon3	c.C3725T	p.P1242L	ATAAGCCATCTCC	.	20	4	14	0	.	229	T	31144428	C	T	31144428	3	4	52	1	0	0	0	0	1	0	0	0	11516	594	21	3	3820	3	PCDH7	4	31144428	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	7329103	31144428	160009848	47	7584											
BEND4	389206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	42145706	42145706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BEND4	NM_001159547	exon3	c.C793A	p.P265T	GGTTTGGAGTTGG	.	158	11	78	0	.	90	T	42145706	G	T	42145706	3	4	52	1	0	0	0	0	1	0	0	0	1400	1174	41	3	827	3	BEND4	4	42145706	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	11001278	42145706	149008570	48	7585											
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89591339	89591339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC3	NM_014606	exon16	c.A1847T	p.E616V	TTCCTGAGATTTC	.	89	31	82	0	.	660	T	89591339	A	T	89591339	3	4	52	1	0	0	0	0	1	0	0	0	7059	304	11	4	1901	4	HERC3	4	89591339	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	47445633	89591339	101562937	49	7586											
IL21	59067	ucsc.edu;bcgsc.ca	37	4	123534071	123534071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IL21	NM_001207006	exon4	c.T373C	p.C125R	AATCACATGAAGG	.	44	4	54	0	.	90	G	123534071	A	G	123534071	3	3	52	1	0	0	0	0	1	0	0	0	7670	217	8	2	123	2	IL21	4	123534071	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	33942732	123534071	67620205	50	7587											
FAT4	79633	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	126369855	126369855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G7684A	p.A2562T	AATAAGGCCGATT	.	25	12	42	0	.	108	A	126369855	G	A	126369855	3	1	52	1	0	0	0	0	1	0	0	0	5692	1203	42	3	7718	3	FAT4	4	126369855	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	2835784	126369855	64784421	51	7588											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126371628	126371628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G9457C	p.D3153H	GCTCTTGATTATG	.	67	11	75	0	.	108	C	126371628	G	C	126371628	3	2	52	1	0	0	0	0	1	0	0	0	5692	1290	45	4	9491	4	FAT4	4	126371628	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	1773	126371628	64782648	52	7589											
MAP9	79884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156289738	156289738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP9	NM_001039580	exon5	c.G708T	p.E236D	GCTAACCTCAGGA	.	88	29	110	0	.	91	A	156289738	C	A	156289738	3	1	52	1	0	0	0	0	1	0	0	0	9270	695	24	3	1275	3	MAP9	4	156289738	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	29918110	156289738	34864538	53	7590											
CBR4	84869	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169923357	169923357	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CBR4	NM_032783	exon5	c.401-1G>C	.	TGCTTCCTAGGAC	.	49	24	31	0	.	90	G	169923357	C	G	169923357	5	3	52	1	0	0	0	0	0	0	1	0	2710	695	24	4	321	4	CBR4	4	169923357	Splice_Site	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	13633619	169923357	21230919	54	7591											
EMB	133418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	49724007	49724007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EMB	NM_198449	exon2	c.C167T	p.S56F	TCCAAGGAAAAGT	.	78	16	55	0	.	90	A	49724007	G	A	49724007	3	1	52	1	0	0	0	0	1	0	0	0	5085	1174	41	3	848	3	EMB	5	49724007	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		49724007	131191253	55	7592											
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	52405551	52405551	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS2	NM_176806	exon1	c.G9A	p.P3P	GCACAGCGGCACC	.	49	19	31	0	.	90	T	52405551	C	T	52405551	2	4	52	1	0	0	0	0	0	0	0	1	9691	755	27	1		1	MOCS2	5	52405551	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	2681544	52405551	128509709	56	7593											
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94025298	94025298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD32	NM_032290	exon18	c.G2406T	p.K802N	TCACAAGACTAAT	.	82	25	66	0	.	92	T	94025298	G	T	94025298	3	4	52	1	0	0	0	0	1	0	0	0	660	933	33	3	2472	3	ANKRD32	5	94025298	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	41619747	94025298	86889962	57	7594											
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125759319	125759319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRAMD3	NM_001146321	exon1	c.T2C	p.M1T	GCAAGATGTGGAA	.	114	63	56	0	.	90	C	125759319	T	C	125759319	3	2	52	1	0	0	0	0	1	0	0	0	6751	1464	51	2	155	2	GRAMD3	5	125759319	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	31734021	125759319	55155941	58	7595											
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134143603	134143603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DDX46	NM_014829	exon16	c.C2120T	p.A707V	ACAGAGCAGGGCG	.	90	24	77	0	.	227	T	134143603	C	T	134143603	3	4	52	1	0	0	0	0	1	0	0	0	4364	710	25	3	2182	3	DDX46	5	134143603	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	8384284	134143603	46771657	59	7596											
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	149677216	149677216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARSI	NM_001012301	exon2	c.G1271A	p.W424X	AGCTTCCACTCAC	.	66	24	35	0	.	92	T	149677216	C	T	149677216	4	4	52	1	0	0	0	0	0	1	0	0	994	595	21	3	442	3	ARSI	5	149677216	Nonsense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	15533613	149677216	31238044	60	7597											
HDGFL1	154150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	22570186	22570186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HDGFL1	NM_138574	exon1	c.G382A	p.E128K	GGCGACGAATTGG	.	94	38	28	0	.	90	A	22570186	G	A	22570186	3	1	52	1	0	0	0	0	1	0	0	0	7019	1059	37	1	384	1	HDGFL1	6	22570186	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		22570186	148544881	61	7598											
HIST1H2BD	3017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26158595	26158595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HIST1H2BD	NM_021063	exon1	c.C198T	p.F66F	TTCCTTCGTCAAC	.	202	26	106	0	.	70	T	26158595	C	T	26158595	2	4	52	1	0	0	0	0	0	0	0	1	7143	883	31	1		1	HIST1H2BD	6	26158595	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	3588409	26158595	144956472	62	7599											
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29574930	29574930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABBR1	NM_001470	exon17	c.G2058T	p.W686C	GACCCACCAAATC	.	183	18	65	0	.	521	A	29574930	C	A	29574930	3	1	52	1	0	0	0	0	1	0	0	0	6155	508	18	3	855	3	GABBR1	6	29574930	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	3416335	29574930	141540137	63	7600											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778842	31778842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HSPA1L	NM_005527	exon2	c.G908A	p.R303Q	TCAAATCGAGCTC	.	113	60	58	0	.	230	T	31778842	C	T	31778842	3	4	52	1	0	0	0	0	1	0	0	0	7410	884	31	1	1021	1	HSPA1L	6	31778842	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	2203912	31778842	139336225	64	7601											
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33053656	33053656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-DPB1	NM_002121	exon4	c.G747T	p.R249S	CAGGAGGAGCAAG	.	116	8	51	0	.	515	T	33053656	G	T	33053656	3	4	52	1	0	0	0	0	1	0	0	0	7203	1165	41	3	761	3	HLA-DPB1	6	33053656	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	1274814	33053656	138061411	65	7602											
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36823793	36823793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPIL1	NM_016059	exon4	c.A297G	p.A99A	GGCCATTGCGAGA	.	63	35	28	0	.	91	C	36823793	T	C	36823793	2	2	52	1	0	0	0	0	0	0	0	1	12326	1799	63	2		2	PPIL1	6	36823793	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	3770137	36823793	134291274	66	7603											
MOCS1	4337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39895091	39895091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS1	NM_005943	exon1	c.T227C	p.L76P	TCTGTGAGGGAGA	.	101	17	33	0	.	92	G	39895091	A	G	39895091	3	3	52	1	0	0	0	0	1	0	0	0	9690	304	11	2	966	2	MOCS1	6	39895091	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	3071298	39895091	131219976	67	7604											
OPN5	221391	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	47763244	47763244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPN5	NM_181744	exon4	c.C701A	p.A234D	AAGTAGCTCATTT	.	220	18	97	1	.	69	A	47763244	C	A	47763244	3	1	52	1	0	0	0	0	1	0	0	0	10883	797	28	3	715	3	OPN5	6	47763244	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	7868153	47763244	123351823	68	7605											
MAP3K5	4217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136913604	136913604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP3K5	NM_005923	exon22	c.T3027C	p.D1009D	CTTGACATCTCTT	.	99	16	66	0	.	982	G	136913604	A	G	136913604	2	3	52	1	0	0	0	0	0	0	0	1	9253	214	8	2		2	MAP3K5	6	136913604	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	89150360	136913604	34201463	69	7606											
AQP1	358	hgsc.bcm.edu;broad.mit.edu	37	7	30951862	30951862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP1	NM_198098	exon1	c.C338T	p.S113L	TCCTCTCAGGCAT	.	82	10	15	0	.	514	T	30951862	C	T	30951862	3	4	52	1	0	0	0	0	1	0	0	0	821	838	29	3	340	3	AQP1	7	30951862	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		30951862	128186801	70	7607											
NPSR1	387129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34698055	34698055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	NPSR1,NS,malignant_melanoma,0	NPSR1	NM_207172	exon1	c.G31A	p.D11N	AGCTTCGATTCCA	.	106	38	60	0	.	94	A	34698055	G	A	34698055	3	1	52	1	0	0	0	0	1	0	0	0	10600	1058	37	1	33	1	NPSR1	7	34698055	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	3746193	34698055	124440608	71	7608											
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44149823	44149823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AEBP1	NM_001129	exon11	c.C1278A	p.D426E	TGAGGACGACTAC	.	138	14	57	0	.	90	A	44149823	C	A	44149823	3	1	52	1	0	0	0	0	1	0	0	0	349	535	19	1	1320	1	AEBP1	7	44149823	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	9451768	44149823	114988840	72	7609											
FZD9	8326	hgsc.bcm.edu;broad.mit.edu	37	7	72849249	72849250	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FZD9	NM_003508	exon1	c.912_913insCAG	p.I304delinsIQ	CGTGATCCAGGAG	.	108	20	36	0	.	1082	CAG	72849250	-	CAG	72849249	7	5	52	1	0	1	1	0	0	0	0	0	6137	845	30	0	914	0	FZD9	7	72849249	In_Frame_Ins	INS	-	TCGA-DD-A11A-01A-11D-A12Z-10	28699426	72849249	86289414	73	7610											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	TGATGATCTAGGT	.	229	120	92	0	.	159	C	72903721	T	C	72903721	3	2	52	1	0	0	0	0	1	0	0	0	1330	1449	50	2	3813	2	BAZ1B	7	72903721	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	54472	72903721	86234942	74	7611											
GTF2IRD2	84163	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	74212425	74212425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GTF2IRD2	NM_173537	exon16	c.C1426A	p.Q476K	TATACTGGTCATA	.	2107	101	197	0	.	23	T	74212425	G	T	74212425	3	4	52	1	0	0	0	0	1	0	0	0	6869	1357	47	3	1427	3	GTF2IRD2	7	74212425	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	1308704	74212425	84926238	75	7612											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82583266	82583266	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCLO	NM_014510	exon5	c.T7003C	p.L2335L	CGGATAAGCTACT	.	360	82	120	0	.	29	G	82583266	A	G	82583266	2	3	52	1	0	0	0	0	0	0	0	1	11583	69	3	2		2	PCLO	7	82583266	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	8370841	82583266	76555397	76	7613											
SEMA3D	223117	broad.mit.edu;bcgsc.ca	37	7	84666204	84666204	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3D	NM_152754	exon11	c.1191+1G>A	.	TACATACTGTACC	.	69	6	59	0	.	138	T	84666204	C	T	84666204	5	4	52	1	0	0	0	0	0	0	1	0	14027	579	20	3	1173	3	SEMA3D	7	84666204	Splice_Site	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	2082938	84666204	74472459	77	7614											
SEMA3D	223117	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	84697509	84697509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3D	NM_152754	exon5	c.C587A	p.T196K	TTACCTGTCATTA	.	109	12	56	1	.	138	T	84697509	G	T	84697509	3	4	52	1	0	0	0	0	1	0	0	0	14027	1377	48	3	1798	3	SEMA3D	7	84697509	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	31305	84697509	74441154	78	7615											
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	123594436	123594436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAM1	NM_153189	exon3	c.C812T	p.P271L	AGTCTCCTGTAGC	.	107	12	71	0	.	94	T	123594436	C	T	123594436	3	4	52	1	0	0	0	0	1	0	0	0	14986	681	24	3	814	3	SPAM1	7	123594436	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	38896927	123594436	35544227	79	7616											
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	135390908	135390908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC13A4	NM_012450	exon4	c.G506A	p.G169D	GAGTTGCCCGCCA	.	108	13	41	0	.	90	T	135390908	C	T	135390908	3	4	52	1	0	0	0	0	1	0	0	0	14394	739	26	3	1426	3	SLC13A4	7	135390908	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	11796472	135390908	23747755	80	7617											
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142724155	142724155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR9A2	NM_001001658	exon1	c.T65G	p.L22R	TGGTGTAGTCCTT	.	146	51	82	0	.	69	C	142724155	A	C	142724155	3	2	52	1	0	0	0	0	1	0	0	0	11248	420	15	5	871	5	OR9A2	7	142724155	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	7333247	142724155	16414508	81	7618											
GALNTL5	168391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	CTGTCAGCTTGGT	.	170	116	97	0	.	92	A	151664464	G	A	151664464	3	1	52	1	0	0	0	0	1	0	0	0	6224	971	34	3	135	3	GALNTL5	7	151664464	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	8940309	151664464	7474199	82	7619											
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17421125	17421125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC7A2	NM_001164771	exon11	c.C1805A	p.P602Q	TCTTACCATTTTT	.	343	73	127	0	.	93	A	17421125	C	A	17421125	3	1	52	1	0	0	0	0	1	0	0	0	14697	594	21	3	1988	3	SLC7A2	8	17421125	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		17421125	128942897	83	7620											
SLC18A1	6570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20004896	20004896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC18A1	NM_003053	exon15	c.C1337A	p.S446Y	CCGGTGGATGGAC	.	79	13	54	0	.	92	T	20004896	G	T	20004896	3	4	52	1	0	0	0	0	1	0	0	0	14425	1174	41	3	248	3	SLC18A1	8	20004896	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	2583771	20004896	126359126	84	7621											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71039123	71039123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCOA2	NM_006540	exon19	c.G3841A	p.G1281S	GCATACCACTAGG	.	149	23	71	0	.	639	T	71039123	C	T	71039123	3	4	52	1	0	0	0	0	1	0	0	0	10229	594	21	3	573	3	NCOA2	8	71039123	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	51034227	71039123	75324899	85	7622											
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72233982	72233982	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EYA1	NM_172059	exon5	c.C405A	p.G135G	GGAAATGCCGTAC	.	313	41	112	0	.	652	T	72233982	G	T	72233982	2	4	52	1	0	0	0	0	0	0	0	1	5328	1306	46	3		3	EYA1	8	72233982	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	1194859	72233982	74130040	86	7623											
PTDSS1	9791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97345763	97345763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTDSS1	NM_014754	exon13	c.C1391T	p.S464L	CCAAGTCAAAAGT	.	113	17	64	0	.	91	T	97345763	C	T	97345763	3	4	52	1	0	0	0	0	1	0	0	0	12736	838	29	3	1441	3	PTDSS1	8	97345763	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	25111781	97345763	49018259	87	7624											
ZC3H3	23144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144550407	144550407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZC3H3	NM_015117	exon8	c.C2147A	p.P716H	GAGAAGGGGCAGG	.	58	20	24	0	.	91	T	144550407	G	T	144550407	3	4	52	1	0	0	0	0	1	0	0	0	17566	1232	43	3	719	3	ZC3H3	8	144550407	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	47204644	144550407	1813615	88	7625											
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145623090	145623090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPSF1	NM_013291	exon21	c.C2078G	p.S693C	ACCTTGGACTGCT	.	41	10	15	0	.	91	C	145623090	G	C	145623090	3	2	52	1	0	0	0	0	1	0	0	0	3824	1174	41	4	2325	4	CPSF1	8	145623090	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	1072683	145623090	740932	89	7626											
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17795714	17795714	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SH3GL2	NM_003026	exon9	c.G1032A	p.V344V	TTATGTGGAAATT	.	277	59	109	0	.	91	A	17795714	G	A	17795714	2	1	52	1	0	0	0	0	0	0	0	1	14251	1335	47	3		3	SH3GL2	9	17795714	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		17795714	123417717	90	7627											
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21334288	21334288	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL9	NM_018847	exon1	c.C571T	p.L191L	GTTTTAGAAACTC	.	40	9	42	0	.	94	A	21334288	G	A	21334288	2	1	52	1	0	0	0	0	0	0	0	1	8396	933	33	3		3	KLHL9	9	21334288	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	3538574	21334288	119879143	91	7628											
KIAA1161	57462	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	34371283	34371283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1161	.	.	.	.	GCCCACCATATCG	.	54	33	16	0	.	136	A	34371283	C	A	34371283	3	1	52	1	0	0	0	0	1	0	0	0	8211	594	21	3	489	3	KIAA1161	9	34371283	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	13036995	34371283	106842148	92	7629											
CNTNAP3	79937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	39140553	39140553	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNTNAP3	NM_033655	exon12	c.C1839A	p.G613G	CAGGGGGCCACTT	.	593	114	172	1	.	91	T	39140553	G	T	39140553	2	4	52	1	0	0	0	0	0	0	0	1	3648	1190	42	3		3	CNTNAP3	9	39140553	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	4769270	39140553	102072878	93	7630											
IKBKAP	8518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111658811	111658811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IKBKAP	NM_003640	exon25	c.G2701C	p.D901H	CCAAATCAAAGTC	.	93	31	82	0	.	318	G	111658811	C	G	111658811	3	3	52	1	0	0	0	0	1	0	0	0	7610	826	29	4	1349	4	IKBKAP	9	111658811	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	72518258	111658811	29554620	94	7631											
TNC	3371	ucsc.edu;bcgsc.ca	37	9	117848511	117848511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TNC	NM_002160	exon3	c.A1499G	p.Q500R	GGGCATTGGCGAT	.	43	4	34	0	.	517	C	117848511	T	C	117848511	3	2	52	1	0	0	0	0	1	0	0	0	16267	1812	63	2	5210	2	TNC	9	117848511	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	6189700	117848511	23364920	95	7632											
FBXW5	54461	ucsc.edu;bcgsc.ca	37	9	139836046	139836046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBXW5	NM_018998	exon7	c.A1187G	p.D396G	ACGTGGTCCAGCG	.	32	4	23	0	.	226	C	139836046	T	C	139836046	3	2	52	1	0	0	0	0	1	0	0	0	5768	1667	58	2	525	2	FBXW5	9	139836046	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	21987535	139836046	1377385	96	7633											
NET1	10276	ucsc.edu;bcgsc.ca	37	10	5496968	5496968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NET1	NM_001047160	exon10	c.T1084C	p.C362R	TCCGAGTGCCAGT	.	43	4	56	0	.	290	C	5496968	T	C	5496968	3	2	52	1	0	0	0	0	1	0	0	0	10338	1696	59	2	1219	2	NET1	10	5496968	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10		5496968	130037779	97	7634											
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6553138	6553138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCQ	NM_006257	exon3	c.T137A	p.I46N	TTCTGGATATACA	.	98	46	98	0	.	1380	T	6553138	A	T	6553138	3	4	52	1	0	0	0	0	1	0	0	0	12515	333	12	4	2047	4	PRKCQ	10	6553138	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	1056170	6553138	128981609	98	7635											
KIAA1462	57608	ucsc.edu;bcgsc.ca	37	10	30316258	30316258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1462	NM_020848	exon3	c.G2819A	p.G940D	CCGCCACCTTCTT	.	38	4	34	0	.	72	T	30316258	C	T	30316258	3	4	52	1	0	0	0	0	1	0	0	0	8234	507	18	3	1268	3	KIAA1462	10	30316258	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	23763120	30316258	105218489	99	7636											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98743690	98743690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf12	NM_015652	exon1	c.G2543A	p.C848Y	GGAAATGTAGGAG	.	113	29	82	0	.	92	A	98743690	G	A	98743690	3	1	52	1	0	0	0	0	1	0	0	0	1589	1377	48	3	2545	3	C10orf12	10	98743690	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	68427432	98743690	36791057	100	7637											
CWF19L1	55280	ucsc.edu;bcgsc.ca	37	10	102003453	102003453	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CWF19L1	NM_018294	exon11	c.1044+2T>C	.	TAACTCACATGTG	.	38	4	31	0	.	90	G	102003453	A	G	102003453	5	3	52	1	0	0	0	0	0	0	1	0	4071	173	6	2	590	2	CWF19L1	10	102003453	Splice_Site	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	3259763	102003453	33531294	101	7638											
TDRD1	56165	ucsc.edu;bcgsc.ca	37	10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD1	NM_198795	exon26	c.A3541G	p.T1181A	TCAGAAACAGCAT	.	41	4	58	1	.	90	G	115991247	A	G	115991247	3	3	52	1	0	0	0	0	1	0	0	0	15727	43	2	2	3639	2	TDRD1	10	115991247	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	13987794	115991247	19543500	102	7639											
PRKCDBP	112464	broad.mit.edu;bcgsc.ca	37	11	6340705	6340705	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCDBP	NM_145040	exon2	c.G474A	p.L158L	GGCCTCCAGCTGC	.	47	5	34	0	.	115	T	6340705	C	T	6340705	2	4	52	1	0	0	0	0	0	0	0	1	12510	581	21	3		3	PRKCDBP	11	6340705	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		6340705	128665811	103	7640											
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18050909	18050909	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TPH1	NM_004179	exon6	c.471-1G>C	.	TCTCCACTAATGA	.	63	17	60	0	.	90	G	18050909	C	G	18050909	5	3	52	1	0	0	0	0	0	0	1	0	16398	579	20	4	888	4	TPH1	11	18050909	Splice_Site	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	11710204	18050909	116955607	104	7641											
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18339305	18339305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HPS5	NM_181507	exon2	c.G101A	p.R34H	TTTAGACGACTGG	.	96	22	59	0	.	133	T	18339305	C	T	18339305	3	4	52	1	0	0	0	0	1	0	0	0	7342	536	19	1	3376	1	HPS5	11	18339305	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	288396	18339305	116667211	105	7642											
PHF21A	51317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45975168	45975168	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHF21A	NM_016621	exon10	c.A1005G	p.K335K	GTGAGATTTAACT	.	396	190	126	0	.	92	C	45975168	T	C	45975168	2	2	52	1	0	0	0	0	0	0	0	1	11833	1490	52	2		2	PHF21A	11	45975168	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	27635863	45975168	89031348	106	7643											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55111334	55111334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR4A16	NM_001005274	exon1	c.C658A	p.L220I	GTCATCCTAAACT	.	342	76	138	0	.	69	A	55111334	C	A	55111334	3	1	52	1	0	0	0	0	1	0	0	0	11041	680	24	3	660	3	OR4A16	11	55111334	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	9136166	55111334	79895182	107	7644											
OR8H2	390151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55872714	55872714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR8H2	NM_001005200	exon1	c.C196A	p.H66N	CTTACTCACCTGT	.	184	18	99	0	.	70	A	55872714	C	A	55872714	3	1	52	1	0	0	0	0	1	0	0	0	11238	826	29	3	198	3	OR8H2	11	55872714	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	761380	55872714	79133802	108	7645											
KRTAP5-11	440051	broad.mit.edu;bcgsc.ca	37	11	71293828	71293834	+	Frame_Shift_Del	DEL	GAGCCAC	GAGCCAC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GAGCCAC	GAGCCAC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP5-11	NM_001005405	exon1	c.50_56del	p.17_19del	CTGCCGGAGCCAC	.	237	10	71	0	.	90	-	71293834	GAGCCAC	-	71293828	7	5	52	1	0	1	0	1	0	0	0	0	8560	1174	41	0	418	0	KRTAP5-11	11	71293828	Frame_Shift_Del	DEL	GAGCCAC	TCGA-DD-A11A-01A-11D-A12Z-10	15421114	71293828	63712688	109	7646											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94353216	94353216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PIWIL4	NM_152431	exon19	c.C2348A	p.T783N	GTCCTACCTACTA	.	89	13	88	0	.	91	A	94353216	C	A	94353216	3	1	52	1	0	0	0	0	1	0	0	0	11960	507	18	3	2422	3	PIWIL4	11	94353216	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	23059388	94353216	40653300	110	7647											
PPP2R1B	5519	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111624197	111624197	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPP2R1B	NM_002716	exon9	c.A1134G	p.L378L	AAGAGGTAGAAGA	.	55	11	56	1	.	658	C	111624197	T	C	111624197	2	2	52	1	0	0	0	0	0	0	0	1	12383	1625	57	2		2	PPP2R1B	11	111624197	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	17270981	111624197	23382319	111	7648											
APOC3	345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116701502	116701502	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APOC3	NM_000040	exon3	c.C69T	p.A23A	AGAGGCCGAGGAT	.	38	6	47	0	.	68	T	116701502	C	T	116701502	2	4	52	1	0	0	0	0	0	0	0	1	799	639	23	1		1	APOC3	11	116701502	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	5077305	116701502	18305014	112	7649											
C2CD2L	9854	ucsc.edu;bcgsc.ca	37	11	118984632	118984632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C2CD2L	NM_014807	exon12	c.C1560T	p.P520P	AGAGCCCAGTGGG	.	34	4	36	0	.	68	T	118984632	C	T	118984632	2	4	52	1	0	0	0	0	0	0	0	1	2153	581	21	3		3	C2CD2L	11	118984632	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	2283130	118984632	16021884	113	7650											
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1192560	1192560	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERC1	NM_178039	exon3	c.G900C	p.Q300H	AAAGCAGACCCTA	.	38	9	49	0	.	660	C	1192560	G	C	1192560	3	2	52	1	0	0	0	0	1	0	0	0	5210	933	33	4	906	4	ERC1	12	1192560	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		1192560	132659335	114	7651											
LALBA	3906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48963012	48963012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LALBA	NM_002289	exon2	c.A145G	p.M49V	GAAACATGGTACA	.	109	18	66	0	.	90	C	48963012	T	C	48963012	3	2	52	1	0	0	0	0	1	0	0	0	8604	1464	51	2	295	2	LALBA	12	48963012	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	47770452	48963012	84888883	115	7652											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53670586	53670586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ESPL1	NM_012291	exon8	c.A1883T	p.H628L	CCACCCACCTGGT	.	42	14	15	0	.	228	T	53670586	A	T	53670586	3	4	52	1	0	0	0	0	1	0	0	0	5253	159	6	4	1909	4	ESPL1	12	53670586	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	4707574	53670586	80181309	116	7653											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64505683	64505683	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRGAP1	NM_020762	exon17	c.C2061T	p.I687I	CATCATCATCCAC	.	150	18	96	0	.	653	T	64505683	C	T	64505683	2	4	52	1	0	0	0	0	0	0	0	1	15144	816	29	3		3	SRGAP1	12	64505683	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	10835097	64505683	69346212	117	7654											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70954625	70954625	+	Missense_Mutation	SNP	C	C	G	rs112738980	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon17	c.G4258C	p.D1420H	AAAAGTCAAAGTC	.	138	15	90	0	.	226	G	70954625	C	G	70954625	3	3	52	1	0	0	0	0	1	0	0	0	12796	826	29	4	2461	4	PTPRB	12	70954625	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	6448942	70954625	62897270	118	7655											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70984008	70984008	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon8	c.G1786C	p.D596H	CTTTGTCTGGAAC	.	227	25	99	0	.	226	G	70984008	C	G	70984008	3	3	52	1	0	0	0	0	1	0	0	0	12796	913	32	4	4969	4	PTPRB	12	70984008	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	29383	70984008	62867887	119	7656											
GLIPR1	11010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75875766	75875766	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLIPR1	NM_006851	exon2	c.T327A	p.S109S	TTTTTCTGTGTCT	.	143	32	77	0	.	159	A	75875766	T	A	75875766	2	1	52	1	0	0	0	0	0	0	0	1	6441	1567	55	4		4	GLIPR1	12	75875766	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	4891758	75875766	57976129	120	7657											
LRRIQ1	84125	broad.mit.edu;mdanderson.org	37	12	85449370	85449370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRIQ1	NM_001079910	exon8	c.A799G	p.R267G	AGAACAAGATTTA	.	80	7	60	0	.	95	G	85449370	A	G	85449370	3	3	52	1	0	0	0	0	1	0	0	0	9029	64	3	2	825	2	LRRIQ1	12	85449370	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	9573604	85449370	48402525	121	7658											
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25435486	25435486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF17	NM_031277	exon27	c.C3855T	p.P1285P	TATACCCCAGTTT	.	216	28	114	0	.	228	T	25435486	C	T	25435486	2	4	52	1	0	0	0	0	0	0	0	1	13461	610	22	3		3	RNF17	13	25435486	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		25435486	89734392	122	7659											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39265592	39265592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FREM2	NM_207361	exon1	c.A4111G	p.T1371A	AATTTTACCCAGG	.	91	10	76	0	.	100	G	39265592	A	G	39265592	3	3	52	1	0	0	0	0	1	0	0	0	6045	391	14	2	4113	2	FREM2	13	39265592	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	13830106	39265592	75904286	123	7660											
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	60498943	60498943	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DIAPH3	NM_001042517	exon18	c.T2136G	p.L712L	AAACTTAAGTTCT	.	239	50	148	0	.	516	C	60498943	A	C	60498943	2	2	52	1	0	0	0	0	0	0	0	1	4520	349	13	5		5	DIAPH3	13	60498943	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	21233351	60498943	54670935	124	7661											
DOCK9	23348	broad.mit.edu;bcgsc.ca	37	13	99534228	99534228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOCK9	NM_001130049	exon24	c.G2596T	p.A866S	AGAAGGCGATCAT	.	145	8	60	0	.	90	A	99534228	C	A	99534228	3	1	52	1	0	0	0	0	1	0	0	0	4694	768	27	1	3806	1	DOCK9	13	99534228	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	39035285	99534228	15635650	125	7662											
ITGBL1	9358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102366888	102366888	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITGBL1	NM_004791	exon10	c.T1380G	p.G460G	TGATGGTCTCATT	.	208	50	105	0	.	92	G	102366888	T	G	102366888	2	3	52	1	0	0	0	0	0	0	0	1	7902	1654	58	5		5	ITGBL1	13	102366888	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	2832660	102366888	12802990	126	7663											
BTBD6	90135	ucsc.edu;bcgsc.ca	37	14	105715779	105715779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BTBD6	NM_033271	exon4	c.C389T	p.P130L	ACATTCCAGACGT	.	38	4	42	0	.	90	T	105715779	C	T	105715779	3	4	52	1	0	0	0	0	1	0	0	0	1545	594	21	3	399	3	BTBD6	14	105715779	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		105715779	1633761	127	7664											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	25959333	25959333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP10A	NM_024490	exon10	c.G1832A	p.R611Q	AACCTCCGCAGGA	.	31	12	16	0	.	139	T	25959333	C	T	25959333	3	4	52	1	0	0	0	0	1	0	0	0	1116	652	23	1	2715	1	ATP10A	15	25959333	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		25959333	76572059	128	7665											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	28457606	28457606	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC2	NM_004667	exon43	c.A6910T	p.K2304X	CCTGTTTAGTCGA	.	921	161	185	0	.	234	A	28457606	T	A	28457606	4	1	52	1	0	0	0	0	0	1	0	0	7058	1763	61	4	7798	4	HERC2	15	28457606	Nonsense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	2498273	28457606	74073786	129	7666											
TMCO5A	145942	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38229051	38229051	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMCO5A	NM_152453	exon3	c.G144A	p.L48L	CAGGCTGGAAAGT	.	21	5	15	0	.	514	A	38229051	G	A	38229051	2	1	52	1	0	0	0	0	0	0	0	1	15996	1335	47	3		3	TMCO5A	15	38229051	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	9771445	38229051	64302341	130	7667											
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41854881	41854881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TYRO3	NM_006293	exon4	c.G545A	p.G182E	TCGGGGGACCCGC	.	47	31	42	0	.	1388	A	41854881	G	A	41854881	3	1	52	1	0	0	0	0	1	0	0	0	16811	1174	41	3	559	3	TYRO3	15	41854881	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	3625830	41854881	60676511	131	7668											
STRC	161497	broad.mit.edu;bcgsc.ca	37	15	43895454	43895454	+	Missense_Mutation	SNP	C	C	T	rs141841779	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STRC	NM_153700	exon23	c.G4531A	p.G1511S	CTTTGCCCATGGC	.	99	5	67	0	C|1.000;G|0.000	90	T	43895454	C	T	43895454	3	4	52	1	0	0	0	0	1	0	0	0	15327	623	22	3	824	3	STRC	15	43895454	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	2040573	43895454	58635938	132	7669											
CTDSPL2	51496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44811383	44811383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTDSPL2	NM_016396	exon11	c.G1129A	p.E377K	TTCCGTGAACATT	.	109	27	75	0	.	90	A	44811383	G	A	44811383	3	1	52	1	0	0	0	0	1	0	0	0	4006	1291	45	3	1167	3	CTDSPL2	15	44811383	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	915929	44811383	57720009	133	7670											
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59464100	59464100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO1E	NM_004998	exon22	c.C2476T	p.L826F	ACCTGAGGGACAC	.	87	19	49	0	.	514	A	59464100	G	A	59464100	3	1	52	1	0	0	0	0	1	0	0	0	10072	1000	35	3	878	3	MYO1E	15	59464100	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	14652717	59464100	43067292	134	7671											
BNC1	646	ucsc.edu;bcgsc.ca	37	15	83933193	83933193	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BNC1	NM_001717	exon4	c.T810C	p.H270H	TTGGTCATGACCC	.	43	4	57	0	.	93	G	83933193	A	G	83933193	2	3	52	1	0	0	0	0	0	0	0	1	1474	214	8	2		2	BNC1	15	83933193	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	24469093	83933193	18598199	135	7672											
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	28913552	28913552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP2A1	NM_004320	exon17	c.T2369C	p.V790A	TCCCGGTGCAGCT	.	135	44	58	0	.	93	C	28913552	T	C	28913552	3	2	52	1	0	0	0	0	1	0	0	0	1136	1696	59	2	2435	2	ATP2A1	16	28913552	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10		28913552	61441201	136	7673											
SPIRE2	84501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89924764	89924764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPIRE2	NM_032451	exon8	c.G1121T	p.C374F	TGCCCTGCATCCT	.	60	24	41	0	.	90	T	89924764	G	T	89924764	3	4	52	1	0	0	0	0	1	0	0	0	15071	1319	46	3	1151	3	SPIRE2	16	89924764	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	61011212	89924764	429989	137	7674											
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90126813	90126813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRDM7	NM_001098173	exon9	c.G1169C	p.S390T	GCCATACTCATCC	.	181	63	122	0	.	92	G	90126813	C	G	90126813	3	3	52	1	0	0	0	0	1	0	0	0	12461	565	20	4	317	4	PRDM7	16	90126813	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	202049	90126813	227940	138	7675											
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2282393	2282393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SGSM2	NM_014853	exon23	c.C2963T	p.S988L	TCTCATCGGAGCA	.	155	60	114	0	.	68	T	2282393	C	T	2282393	3	4	52	1	0	0	0	0	1	0	0	0	14223	893	31	1	3053	1	SGSM2	17	2282393	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		2282393	78912817	139	7676											
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4864100	4864100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAG7	NM_004890	exon2	c.A134G	p.K45R	TCCACTTTCTGTT	.	198	151	136	0	.	91	C	4864100	T	C	4864100	3	2	52	1	0	0	0	0	1	0	0	0	14983	1841	64	2	573	2	SPAG7	17	4864100	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	2581707	4864100	76331110	140	7677											
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7578454	7578455	+	In_Frame_Ins	INS	-	-	CGCGGA	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	TP53,NS,carcinoma,-1	TP53	NM_001126112	exon5	c.476_477insTCCGCG	p.A159delinsVRA	GCCATGGCGCGGA	.	32	13	32	0	.	70225	CGCGGA	7578455	-	CGCGGA	7578454	7	5	52	1	0	1	1	0	0	0	0	0	16378	1203	42	0	822	0	TP53	17	7578454	In_Frame_Ins	INS	-	TCGA-DD-A11A-01A-11D-A12Z-10	2714354	7578454	73616756	141	7678											
MYO15A	51168	ucsc.edu;bcgsc.ca	37	17	18045411	18045411	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO15A	NM_016239	exon23	c.C5668G	p.L1890V	GAACACCTATACC	.	44	4	27	0	.	97	G	18045411	C	G	18045411	3	3	52	1	0	0	0	0	1	0	0	0	10063	680	24	4	5754	4	MYO15A	17	18045411	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	10466957	18045411	63149799	142	7679											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	18058480	18058480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO15A	NM_016239	exon45	c.G8281A	p.V2761M	CGGGCCGTGGTCA	.	48	25	19	0	.	97	A	18058480	G	A	18058480	3	1	52	1	0	0	0	0	1	0	0	0	10063	1145	40	1	8455	1	MYO15A	17	18058480	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	13069	18058480	63136730	143	7680											
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18188782	18188782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP3A	NM_004618	exon14	c.C1650T	p.Y550Y	GCCCACGTACATC	.	169	82	63	0	.	228	A	18188782	G	A	18188782	2	1	52	1	0	0	0	0	0	0	0	1	16364	1140	40	1		1	TOP3A	17	18188782	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	130302	18188782	63006428	144	7681											
SMCR8	140775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18221376	18221376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMCR8	NM_144775	exon1	c.G2273T	p.G758V	GCTATGGCTGCTA	.	101	26	53	0	.	91	T	18221376	G	T	18221376	3	4	52	1	0	0	0	0	1	0	0	0	14792	1203	42	3	2275	3	SMCR8	17	18221376	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	32594	18221376	62973834	145	7682											
EPN2	22905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19189061	19189061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EPN2	NM_014964	exon4	c.G724T	p.D242Y	AATGGCGACTGGT	.	160	37	57	1	.	91	T	19189061	G	T	19189061	3	4	52	1	0	0	0	0	1	0	0	0	5186	1058	37	1	730	1	EPN2	17	19189061	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	967685	19189061	62006149	146	7683											
KRT35	3886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39635729	39635729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRT35	NM_002280	exon3	c.A581T	p.Q194L	ACCAGCTGCCGCA	.	184	16	75	0	.	92	A	39635729	T	A	39635729	3	1	52	1	0	0	0	0	1	0	0	0	8472	1580	55	4	806	4	KRT35	17	39635729	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	20446668	39635729	41559481	147	7684											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60757607	60757607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MRC2	NM_006039	exon15	c.C2375T	p.S792F	TGGCCTCCCTGCA	.	131	30	46	0	.	117	T	60757607	C	T	60757607	3	4	52	1	0	0	0	0	1	0	0	0	9758	855	30	3	2433	3	MRC2	17	60757607	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	21121878	60757607	20437603	148	7685											
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66873752	66873752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCA8	NM_007168	exon31	c.G3987A	p.A1329A	CCACAGCGCGTTC	.	120	23	42	0	.	93	T	66873752	C	T	66873752	2	4	52	1	0	0	0	0	0	0	0	1	38	755	27	1		1	ABCA8	17	66873752	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	6116145	66873752	14321458	149	7686											
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80136965	80136965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC57	NM_198082	exon9	c.G1312A	p.E438K	CCCTTTCAATGTC	.	123	24	49	0	.	24	T	80136965	C	T	80136965	3	4	52	1	0	0	0	0	1	0	0	0	2827	835	29	3	1471	3	CCDC57	17	80136965	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	13263213	80136965	1058245	150	7687											
ARHGAP28	79822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6887166	6887166	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP28	NM_001010000	exon11	c.C987T	p.H329H	GCCTCACGTCAAA	.	106	27	91	0	.	91	T	6887166	C	T	6887166	2	4	52	1	0	0	0	0	0	0	0	1	877	535	19	1		1	ARHGAP28	18	6887166	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		6887166	71190082	151	7688											
OSBPL1A	114876	ucsc.edu;bcgsc.ca	37	18	21776105	21776105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OSBPL1A	NM_080597	exon18	c.G1661A	p.R554K	CATTTTCTGAGGA	.	34	4	39	0	.	94	T	21776105	C	T	21776105	3	4	52	1	0	0	0	0	1	0	0	0	11277	913	32	3	1235	3	OSBPL1A	18	21776105	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	14888939	21776105	56301143	152	7689											
AQP4	361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24442273	24442273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP4	NM_001650	exon2	c.C320A	p.T107N	TTCCTGGTGCACA	.	51	13	37	0	.	90	T	24442273	G	T	24442273	3	4	52	1	0	0	0	0	1	0	0	0	828	1261	44	3	667	3	AQP4	18	24442273	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	2666168	24442273	53634975	153	7690											
WDR7	23335	ucsc.edu;bcgsc.ca	37	18	54483320	54483320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR7	NM_015285	exon20	c.T3249C	p.P1083P	AGGGCCTGAAGCA	.	39	4	55	0	.	93	C	54483320	T	C	54483320	2	2	52	1	0	0	0	0	0	0	0	1	17317	1567	55	2		2	WDR7	18	54483320	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	30041047	54483320	23593928	154	7691											
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6458301	6458301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC25A23	NM_024103	exon2	c.G191A	p.G64D	AGCCCGCCATCTG	.	13	12	13	0	.	92	T	6458301	C	T	6458301	3	4	52	1	0	0	0	0	1	0	0	0	14486	739	26	3	1251	3	SLC25A23	19	6458301	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		6458301	52670682	155	7692											
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17264818	17264818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO9B	NM_001130065	exon5	c.A1040G	p.E347G	TCAGCGAGGAAGA	.	46	4	51	0	.	67	G	17264818	A	G	17264818	3	3	52	1	0	0	0	0	1	0	0	0	10085	304	11	2	1054	2	MYO9B	19	17264818	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	10806517	17264818	41864165	156	7693											
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17831786	17831786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP1S	NM_018174	exon2	c.G160C	p.D54H	AACCTTGATGAAC	.	104	23	65	0	.	90	C	17831786	G	C	17831786	3	2	52	1	0	0	0	0	1	0	0	0	9234	1290	45	4	166	4	MAP1S	19	17831786	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	566968	17831786	41297197	157	7694											
PDCD2L	84306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34916969	34916969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDCD2L	NM_032346	exon7	c.C1021G	p.P341A	CAGACTCCCATGG	.	67	23	67	0	.	91	G	34916969	C	G	34916969	3	3	52	1	0	0	0	0	1	0	0	0	11620	855	30	4	1047	4	PDCD2L	19	34916969	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	17085183	34916969	24212014	158	7695											
DLL3	10683	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39996002	39996002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DLL3	NM_016941	exon6	c.C1004G	p.S335C	CTGACTCTGCCTA	.	135	28	51	1	.	1083	G	39996002	C	G	39996002	3	3	52	1	0	0	0	0	1	0	0	0	4567	913	32	4	1026	4	DLL3	19	39996002	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	5079033	39996002	19132981	159	7696											
AXL	558	ucsc.edu;bcgsc.ca	37	19	41736911	41736911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AXL	NM_021913	exon5	c.A626G	p.N209S	CCCATAACGCCAA	.	32	4	28	0	.	1403	G	41736911	A	G	41736911	3	3	52	1	0	0	0	0	1	0	0	0	1238	43	2	2	644	2	AXL	19	41736911	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	1740909	41736911	17392072	160	7697											
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44739856	44739856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF227	NM_182490	exon6	c.A1273T	p.I425F	TTTCACATCCATC	.	46	11	40	0	.	91	T	44739856	A	T	44739856	3	4	52	1	0	0	0	0	1	0	0	0	17778	217	8	4	1287	4	ZNF227	19	44739856	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	3002945	44739856	14389127	161	7698											
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014087	53014087	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001099694	exon6	c.T453A	p.P151P	CAAGCCTATTAAA	.	168	50	121	0	.	.	A	53014087	T	A	53014087	2	1	52	1	0	0	0	0	0	0	0	1	18007	1509	53	4		4	ZNF578	19	53014087	Silent	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10	8274231	53014087	6114896	162	7699											
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53854648	53854648	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_138374	exon4	c.G720A	p.A240A	AGGAGCGAAACAA	.	149	8	110	0	.	.	A	53854648	G	A	53854648	2	1	52	1	0	0	0	0	0	0	0	1	18188	1045	37	1		1	ZNF845	19	53854648	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	840561	53854648	5274335	163	7700											
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54695669	54695669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TSEN34	NM_024075	exon3	c.A341G	p.E114G	TCCTGGAGAAGAT	.	46	10	30	0	.	90	G	54695669	A	G	54695669	3	3	52	1	0	0	0	0	1	0	0	0	16610	304	11	2	347	2	TSEN34	19	54695669	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	841021	54695669	4433314	164	7701											
DSN1	79980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35383170	35383170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSN1	NM_001145315	exon10	c.G957A	p.Q319Q	ACCGAGCTGTACT	.	74	17	33	0	.	92	T	35383170	C	T	35383170	2	4	52	1	0	0	0	0	0	0	0	1	4780	796	28	3		3	DSN1	20	35383170	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10		35383170	27642350	165	7702											
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62729669	62729676	+	Frame_Shift_Del	DEL	CTGGGGCC	CTGGGGCC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGGGGCC	CTGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPRL1	NM_000913	exon4	c.630_637del	p.210_213del	GGATTACTGGGGC	.	257	19	117	0	.	69	-	62729676	CTGGGGCC	-	62729669	7	5	52	1	0	1	0	1	0	0	0	0	10886	576	20	0	640	0	OPRL1	20	62729669	Frame_Shift_Del	DEL	CTGGGGCC	TCGA-DD-A11A-01A-11D-A12Z-10	27346499	62729669	295851	166	7703											
BACH1	571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30699058	30699058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BACH1	NM_206866	exon3	c.G913A	p.E305K	AAATCAGAAGTGA	.	23	9	36	0	.	92	A	30699058	G	A	30699058	3	1	52	1	0	0	0	0	1	0	0	0	1283	943	33	3	919	3	BACH1	21	30699058	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		30699058	17430837	167	7704											
HUNK	30811	ucsc.edu;bcgsc.ca	37	21	33340660	33340660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HUNK	NM_014586	exon6	c.A973G	p.T325A	AATTACACGGGCA	.	43	4	57	0	.	334	G	33340660	A	G	33340660	3	3	52	1	0	0	0	0	1	0	0	0	7458	159	6	2	995	2	HUNK	21	33340660	Missense_Mutation	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	2641602	33340660	14789235	168	7705											
AIRE	326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45712255	45712255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AIRE	NM_000383	exon9	c.C1066T	p.R356W	GAGCCCCGGCCCC	.	32	11	28	0	.	91	T	45712255	C	T	45712255	3	4	52	1	0	0	0	0	1	0	0	0	437	643	23	1	1388	1	AIRE	21	45712255	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	12371595	45712255	2417640	169	7706											
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21161719	21161719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon10	c.A1099G	p.T367A	AGGAAGTGTAGTA	.	54	28	45	0	.	454	C	21161719	T	C	21161719	3	2	52	1	0	0	0	0	1	0	0	0	11873	1696	59	2	5393	2	PI4KA	22	21161719	Missense_Mutation	SNP	T	TCGA-DD-A11A-01A-11D-A12Z-10		21161719	30142847	170	7707											
PI4KA	5297	ucsc.edu;bcgsc.ca	37	22	21174845	21174845	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon5	c.T511C	p.L171L	TCTCCAAGGCCTG	.	41	4	38	0	.	454	G	21174845	A	G	21174845	2	3	52	1	0	0	0	0	0	0	0	1	11873	69	3	2		2	PI4KA	22	21174845	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	13126	21174845	30129721	171	7708											
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42607990	42607990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF20	NM_181492	exon1	c.G3322C	p.V1108L	CAATTACTCCCTG	.	52	7	38	0	.	95	G	42607990	C	G	42607990	3	3	52	1	0	0	0	0	1	0	0	0	15687	565	20	4	2598	4	TCF20	22	42607990	Missense_Mutation	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	21433145	42607990	8696576	172	7709											
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18622799	18622799	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDKL5	NM_003159	exon12	c.G1755A	p.L585L	TTCACTGTCTGCA	.	49	32	36	0	.	838	A	18622799	G	A	18622799	2	1	52	1	0	0	0	0	0	0	0	1	3157	1364	48	3		3	CDKL5	23	18622799	Silent	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10		18622799	136647761	173	7710											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83129262	83129262	+	Missense_Mutation	SNP	G	G	A	rs201228346		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CYLC1	NM_021118	exon4	c.G1546A	p.D516N	AGAAAGGACACAG	.	94	33	84	0	G|0.999;A|0.001	112	A	83129262	G	A	83129262	3	1	52	1	0	0	0	0	1	0	0	0	4141	1174	41	3	1560	3	CYLC1	23	83129262	Missense_Mutation	SNP	G	TCGA-DD-A11A-01A-11D-A12Z-10	64506463	83129262	72141298	174	7711											
CHRDL1	91851	ucsc.edu;bcgsc.ca	37	X	109919506	109919506	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CHRDL1	NM_001143981	exon12	c.T1330C	p.L444L	TGACTAAATCTTC	.	39	4	26	0	.	130	G	109919506	A	G	109919506	2	3	52	1	0	0	0	0	0	0	0	1	3373	11	1	2		2	CHRDL1	23	109919506	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	26790244	109919506	45351054	175	7712											
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	147084806	147084806	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FMR1NB	NM_152578	exon2	c.A363C	p.A121A	TTCCGCATTGGAA	.	204	13	113	0	.	131	C	147084806	A	C	147084806	2	2	52	1	0	0	0	0	0	0	0	1	5961	204	8	5		5	FMR1NB	23	147084806	Silent	SNP	A	TCGA-DD-A11A-01A-11D-A12Z-10	37165300	147084806	8185754	176	7713											
PNMA3	29944	ucsc.edu;bcgsc.ca	37	X	152226798	152226798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNMA3	NM_013364	exon2	c.C1386T	p.A462A	CAAGGCCAAGTAG	.	37	4	31	0	.	600	T	152226798	C	T	152226798	2	4	52	1	0	0	0	0	0	0	0	1	12155	581	21	3		3	PNMA3	23	152226798	Silent	SNP	C	TCGA-DD-A11A-01A-11D-A12Z-10	5141992	152226798	3043762	177	7714											
NOC2L	26155	ucsc.edu;bcgsc.ca	37	1	883916	883916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NOC2L	NM_015658	exon13	c.T1511C	p.V504A	AGGATCACGGAGA	.	28	4	116	0	.	92	G	883916	A	G	883916	3	3	53	1	0	0	0	0	1	0	0	0	10513	159	6	2	766	2	NOC2L	1	883916	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10		883916	248366705	1	7715											
EPHA2	1969	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16464912	16464912	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EPHA2	NM_004431	exon4	c.A837G	p.G279G	AAAAAATCCAGGC	.	8	3	69	0	.	1419	C	16464912	T	C	16464912	2	2	53	1	0	0	0	0	0	0	0	1	5167	1422	50	2		2	EPHA2	1	16464912	Silent	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	15580996	16464912	232785709	2	7716											
RAP1GAP	5909	ucsc.edu;bcgsc.ca	37	1	21940577	21940577	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAP1GAP	NM_001145658	exon8	c.T489C	p.H163H	ATTGAAATGCTCC	.	28	4	99	1	.	245	G	21940577	A	G	21940577	2	3	53	1	0	0	0	0	0	0	0	1	13037	98	4	2		2	RAP1GAP	1	21940577	Silent	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	5475665	21940577	227310044	3	7717											
ZNF683	257101	broad.mit.edu;bcgsc.ca	37	1	26694190	26694190	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_173574	exon3	c.T213C	p.S71S	CAGTGCAGACCTG	.	55	4	162	0	.	.	G	26694190	A	G	26694190	2	3	53	1	0	0	0	0	0	0	0	1	18087	175	7	2		2	ZNF683	1	26694190	Silent	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	4753613	26694190	222556431	4	7718											
TARS2	80222	ucsc.edu;bcgsc.ca	37	1	150470188	150470188	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TARS2	NM_025150	exon10	c.A1203G	p.T401T	AGATACACTCGCC	.	42	4	65	0	.	91	G	150470188	A	G	150470188	2	3	53	1	0	0	0	0	0	0	0	1	15557	146	6	2		2	TARS2	1	150470188	Silent	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	123775998	150470188	98780433	5	7719											
TTC24	164118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156552954	156552954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TTC24	NM_001105669	exon4	c.G1031T	p.R344L	CTGCCCGGGACTC	.	253	70	300	0	.	46	T	156552954	G	T	156552954	3	4	53	1	0	0	0	0	1	0	0	0	16689	1116	39	1	1041	1	TTC24	1	156552954	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	6082766	156552954	92697667	6	7720											
VANGL2	57216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160388964	160388964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VANGL2	NM_020335	exon4	c.C365T	p.T122M	TCCTCACGCCTCT	.	66	17	48	0	.	91	T	160388964	C	T	160388964	3	4	53	1	0	0	0	0	1	0	0	0	17117	536	19	1	375	1	VANGL2	1	160388964	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	3836010	160388964	88861657	7	7721											
C1orf226	400793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162353415	162353415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C1orf226	NM_001135240	exon3	c.C890T	p.A297V	CTCAGGCACGGAC	.	42	14	36	0	.	1	T	162353415	C	T	162353415	3	4	53	1	0	0	0	0	1	0	0	0	2032	710	25	3	900	3	C1orf226	1	162353415	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	1964451	162353415	86897206	8	7722											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167095694	167095694	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DUSP27	NM_001080426	exon5	c.C1326T	p.S442S	GGAGAGCGTGAGC	.	55	19	35	0	.	71	T	167095694	C	T	167095694	2	4	53	1	0	0	0	0	0	0	0	1	4824	767	27	1		1	DUSP27	1	167095694	Silent	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	4742279	167095694	82154927	9	7723											
PIGC	5279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172413127	172413127	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PIGC	.	.	.	.	CACCTACCCGAGA	.	71	43	61	0	.	226	A	172413127	C	A	172413127	5	1	53	1	0	0	0	0	0	0	1	0	11886	521	18	3		3	PIGC	1	172413127	Splice_Site	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	5317433	172413127	76837494	10	7724											
APOBEC4	403314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183617170	183617170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	APOBEC4	NM_203454	exon2	c.T747A	p.N249K	GTTTGGATTCCTT	.	688	180	731	0	.	90	T	183617170	A	T	183617170	3	4	53	1	0	0	0	0	1	0	0	0	796	330	12	4	360	4	APOBEC4	1	183617170	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	11204043	183617170	65633451	11	7725											
NCKAP5	344148	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133538773	133538773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_207363	exon15	c.A4901C	p.E1634A	CCACTTTCTGTCT	.	275	124	423	2	.	.	G	133538773	T	G	133538773	3	3	53	1	0	0	0	0	1	0	0	0	10223	1783	62	5	852	5	NCKAP5	2	133538773	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10		133538773	109660600	12	7726											
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180036920	180036920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SESTD1	NM_178123	exon5	c.A296G	p.K99R	TCTGGCTTTACCA	.	195	77	304	0	.	228	C	180036920	T	C	180036920	3	2	53	1	0	0	0	0	1	0	0	0	14127	1609	56	2	1850	2	SESTD1	2	180036920	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	46498147	180036920	63162453	13	7727											
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	202245372	202245372	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRAK2	NM_015049	exon16	c.T2639A	p.L880X	CCTAATAAACTGC	.	127	52	189	0	.	90	T	202245372	A	T	202245372	4	4	53	1	0	0	0	0	0	1	0	0	16447	372	13	4	109	4	TRAK2	2	202245372	Nonsense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	22208452	202245372	40954001	14	7728											
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9792677	9792677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OGG1	NM_016819	exon2	c.A186C	p.Q62H	GGATCAAGTATGG	.	71	24	177	0	.	660	C	9792677	A	C	9792677	3	2	53	1	0	0	0	0	1	0	0	0	10845	69	3	5	192	5	OGG1	3	9792677	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10		9792677	188229753	15	7729											
ENTPD3	956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	40442397	40442397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ENTPD3	NM_001248	exon4	c.C181T	p.L61L	ATTGTGCTGGATG	.	157	68	381	0	.	91	T	40442397	C	T	40442397	2	4	53	1	0	0	0	0	0	0	0	1	5140	796	28	3		3	ENTPD3	3	40442397	Silent	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	30649720	40442397	157580033	16	7730											
PLXNA1	5361	broad.mit.edu;bcgsc.ca	37	3	126723964	126723964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLXNA1	NM_032242	exon6	c.T1775C	p.L592P	CTGACCTCTCAGC	.	69	4	169	0	.	93	C	126723964	T	C	126723964	3	2	53	1	0	0	0	0	1	0	0	0	12119	1551	54	2	1797	2	PLXNA1	3	126723964	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	86281567	126723964	71298466	17	7731											
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142525018	142525018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRPC1	NM_001251845	exon13	c.A2323G	p.I775V	AATGAAATAAGGG	.	219	95	256	0	.	92	G	142525018	A	G	142525018	3	3	53	1	0	0	0	0	1	0	0	0	16575	101	4	2	2267	2	TRPC1	3	142525018	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	15801054	142525018	55497412	18	7732											
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164907129	164907129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLITRK3	NM_014926	exon2	c.C1490T	p.P497L	GCTGCAGGCTGGA	.	43	23	69	0	.	100	A	164907129	G	A	164907129	3	1	53	1	0	0	0	0	1	0	0	0	14744	1000	35	3	1447	3	SLITRK3	3	164907129	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	22382111	164907129	33115301	19	7733											
TTC14	151613	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180320104	180320104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TTC14	NM_001042601	exon1	c.T55G	p.S19A	TTGCTCTCTCTAC	.	22	9	44	0	.	91	G	180320104	T	G	180320104	3	3	53	1	0	0	0	0	1	0	0	0	16678	1551	54	5	57	5	TTC14	3	180320104	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	15412975	180320104	17702326	20	7734											
ATP13A3	79572	broad.mit.edu;bcgsc.ca	37	3	194180577	194180577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ATP13A3	NM_024524	exon4	c.A349G	p.N117D	TGGGATTCTCAAT	.	98	6	201	0	.	69	C	194180577	T	C	194180577	3	2	53	1	0	0	0	0	1	0	0	0	1125	1783	62	2	3447	2	ATP13A3	3	194180577	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	13860473	194180577	3841853	21	7735											
SLC12A7	10723	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1079607	1079607	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC12A7	NM_006598	exon10	c.C1302T	p.I434I	CGCCATGATACCT	.	45	16	108	0	.	138	A	1079607	G	A	1079607	2	1	53	1	0	0	0	0	0	0	0	1	14388	1280	45	3		3	SLC12A7	5	1079607	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10		1079607	179835653	22	7736											
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41201723	41201723	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C6	NM_001115131	exon3	c.C237T	p.P79P	GTTGATGGGGCAT	.	183	79	343	0	.	95	A	41201723	G	A	41201723	2	1	53	1	0	0	0	0	0	0	0	1	2315	1335	47	3		3	C6	5	41201723	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	40122116	41201723	139713537	23	7737											
PLAC8L1	153770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145483862	145483862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLAC8L1	NM_001029869	exon1	c.G13A	p.G5R	TACTTCCAAACCA	.	135	52	296	0	.	90	T	145483862	C	T	145483862	3	4	53	1	0	0	0	0	1	0	0	0	12016	603	21	3	536	3	PLAC8L1	5	145483862	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	104282139	145483862	35431398	24	7738											
TRIM15	89870	ucsc.edu;bcgsc.ca	37	6	30138279	30138279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRIM15	NM_033229	exon5	c.T733C	p.C245R	TGCAGGTGTGAGA	.	43	4	111	1	.	90	C	30138279	T	C	30138279	3	2	53	1	0	0	0	0	1	0	0	0	16487	1710	59	2	751	2	TRIM15	6	30138279	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10		30138279	140976788	25	7739											
SKIV2L	6499	ucsc.edu;bcgsc.ca	37	6	31929371	31929371	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SKIV2L	NM_006929	exon9	c.T837C	p.S279S	TCCATCTCAGGAG	.	30	4	95	0	.	290	C	31929371	T	C	31929371	2	2	53	1	0	0	0	0	0	0	0	1	14359	1538	54	2		2	SKIV2L	6	31929371	Silent	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	1791092	31929371	139185696	26	7740											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	p.T432L	GCAACTGTCTGTC	.	114	40	201	0	.	.	AA	74227628	GT	AA	74227627	3	1	53	1	0	0	0	0	1	0	0	0	4923	1377	48	3	97	3	EEF1A1	6	74227627	Missense_Mutation	DNP	GT	TCGA-DD-A11B-01A-11D-A16Z-10	42298256	74227627	96887440	27	7741											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5681008	5681008	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RNF216	NM_207116	exon16	c.1989-1G>T	.	TCTTCACTGAAAT	.	90	42	105	0	.	274	A	5681008	C	A	5681008	5	1	53	1	0	0	0	0	0	0	1	0	13480	579	20	3	624	3	RNF216	7	5681008	Splice_Site	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10		5681008	153457655	28	7742											
EGFR	1956	ucsc.edu;bcgsc.ca	37	7	55270298	55270298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EGFR	NM_005228	exon27	c.A3251G	p.D1084G	TAGACGACACCTT	.	46	4	78	0	.	44910	G	55270298	A	G	55270298	3	3	53	1	0	0	0	0	1	0	0	0	4967	275	10	2	3621	2	EGFR	7	55270298	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	49589290	55270298	103868365	29	7743											
TECPR1	25851	broad.mit.edu;bcgsc.ca	37	7	97851027	97851027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TECPR1	NM_015395	exon23	c.A3103G	p.R1035G	TCAGCCTCTGTCT	.	70	4	191	0	.	91	C	97851027	T	C	97851027	3	2	53	1	0	0	0	0	1	0	0	0	15740	1550	54	2	410	2	TECPR1	7	97851027	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	42580729	97851027	61287636	30	7744											
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107704297	107704298	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LAMB4	NM_007356	exon22	c.2969_2970del	p.990_990del	AAGGCACTCCCCT	.	181	0	438	0	.	140	-	107704298	CT	-	107704297	7	5	53	1	0	1	0	1	0	0	0	0	8613	564	20	0	2367	0	LAMB4	7	107704297	Frame_Shift_Del	DEL	CT	TCGA-DD-A11B-01A-11D-A16Z-10	9853270	107704297	51434366	31	7745											
STAR	6770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38008314	38008314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STAR	NM_000349	exon1	c.T23C	p.L8P	GCGCACAGCTTGA	.	21	9	56	1	.	91	G	38008314	A	G	38008314	3	3	53	1	0	0	0	0	1	0	0	0	15253	188	7	2	862	2	STAR	8	38008314	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10		38008314	108355708	32	7746											
RAB2A	5862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61496802	61496802	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAB2A	NM_002865	exon4	c.G222T	p.S74S	AAGGTCGTATTAC	.	115	39	177	0	.	659	T	61496802	G	T	61496802	2	4	53	1	0	0	0	0	0	0	0	1	12917	1132	40	1		1	RAB2A	8	61496802	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	23488488	61496802	84867220	33	7747											
MFSD3	113655	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145735131	145735131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MFSD3	NM_138431	exon1	c.C415T	p.Q139X	ACCGTGCAGGTGG	.	60	27	44	0	.	69	T	145735131	C	T	145735131	4	4	53	1	0	0	0	0	0	1	0	0	9532	711	25	3	417	3	MFSD3	8	145735131	Nonsense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	84238329	145735131	628891	34	7748											
S1PR3	1903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	91616620	91616620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	S1PR3	NM_005226	exon2	c.G505T	p.G169C	ACGCTGGGCGCCC	.	50	39	85	0	.	949	T	91616620	G	T	91616620	3	4	53	1	0	0	0	0	1	0	0	0	13795	1232	43	3	507	3	S1PR3	9	91616620	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10		91616620	49596811	35	7749											
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116152930	116152930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ALAD	NM_000031	exon6	c.C424T	p.R142W	CAGCCCGGAATGC	.	15	9	37	0	.	90	A	116152930	G	A	116152930	3	1	53	1	0	0	0	0	1	0	0	0	483	1115	39	1	596	1	ALAD	9	116152930	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	24536310	116152930	25060501	36	7750											
SLC2A6	11182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136339125	136339125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC2A6	NM_017585	exon7	c.G1013T	p.R338L	ACCTTGCGGCCTG	.	24	15	96	1	.	90	A	136339125	C	A	136339125	3	1	53	1	0	0	0	0	1	0	0	0	14549	768	27	1	526	1	SLC2A6	9	136339125	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	20186195	136339125	4874306	37	7751											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1096485	1096485	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MUC2	NM_002457	exon35	c.6498delG	p.K2166fs	CGACAAGGTGTCC	.	50	23	110	0	.	90	-	1096485	G	-	1096485	7	5	53	1	0	1	0	1	0	0	0	0	9975	991	35	0	6636	0	MUC2	11	1096485	Frame_Shift_Del	DEL	G	TCGA-DD-A11B-01A-11D-A16Z-10		1096485	133910031	38	7752											
SYT8	90019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1856575	1856575	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SYT8	NM_138567	exon3	c.C186A	p.L62L	CCTCCTCGTCTCC	.	34	13	38	0	.	91	A	1856575	C	A	1856575	2	1	53	1	0	0	0	0	0	0	0	1	15477	871	31	1		1	SYT8	11	1856575	Silent	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	760090	1856575	133149941	39	7753											
SOX6	55553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15994640	15994640	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SOX6	NM_001145819	exon16	c.A2241T	p.P747P	GGTGATTGGAATC	.	125	60	160	0	.	93	A	15994640	T	A	15994640	2	1	53	1	0	0	0	0	0	0	0	1	14955	1799	63	4		4	SOX6	11	15994640	Silent	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	14138065	15994640	119011876	40	7754											
SSRP1	6749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57100232	57100232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SSRP1	NM_003146	exon6	c.G635A	p.G212D	TAACGACCACGAG	.	83	41	114	1	.	228	T	57100232	C	T	57100232	3	4	53	1	0	0	0	0	1	0	0	0	15193	507	18	3	1542	3	SSRP1	11	57100232	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	41105592	57100232	77906284	41	7755											
C11orf24	53838	ucsc.edu;bcgsc.ca	37	11	68031184	68031184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C11orf24	NM_022338	exon3	c.A52G	p.S18G	CATGGCTTTCAGA	.	32	4	77	0	.	90	C	68031184	T	C	68031184	3	2	53	1	0	0	0	0	1	0	0	0	1635	1609	56	2	1305	2	C11orf24	11	68031184	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	10930952	68031184	66975332	42	7756											
PHB2	11331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7078680	7078680	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PHB2	.	.	.	.	AGGGGAGGAGATT	.	62	31	142	1	.	48	A	7078680	G	A	7078680	2	1	53	1	0	0	0	0	0	0	0	1	11815	987	35	3		3	PHB2	12	7078680	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10		7078680	126773215	43	7757											
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29597095	29597095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OVCH1	NM_183378	exon24	c.T3000C	p.S1000S	TCTGTGAGAATTT	.	73	25	102	0	.	210	G	29597095	A	G	29597095	2	3	53	1	0	0	0	0	0	0	0	1	11323	291	11	2		2	OVCH1	12	29597095	Silent	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	22518415	29597095	104254800	44	7758											
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39688230	39688230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIF21A	NM_001173464	exon38	c.A5021G	p.N1674S	GTTTAATTACTGG	.	104	36	314	0	.	97	C	39688230	T	C	39688230	3	2	53	1	0	0	0	0	1	0	0	0	8288	1493	52	2	7	2	KIF21A	12	39688230	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	10091135	39688230	94163665	45	7759											
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122097220	122097220	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MORN3	NM_173855	exon2	c.C180T	p.A60A	ATAGATGGCTCCT	.	94	33	233	0	.	90	A	122097220	G	A	122097220	2	1	53	1	0	0	0	0	0	0	0	1	9709	1335	47	3		3	MORN3	12	122097220	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	82408990	122097220	11754675	46	7760											
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	45147977	45147977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TSC22D1	NM_183422	exon1	c.C2234T	p.P745L	GTAGAGGGCTGCT	.	88	34	119	0	.	90	A	45147977	G	A	45147977	3	1	53	1	0	0	0	0	1	0	0	0	16604	1232	43	3	1128	3	TSC22D1	13	45147977	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10		45147977	70021901	47	7761											
SALL2	6297	ucsc.edu;bcgsc.ca	37	14	21991026	21991026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SALL2	NM_005407	exon2	c.A2836G	p.R946G	CCTGCCTGCAGAA	.	29	4	65	0	.	92	C	21991026	T	C	21991026	3	2	53	1	0	0	0	0	1	0	0	0	13811	1579	55	2	191	2	SALL2	14	21991026	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10		21991026	85358514	48	7762											
FANCM	57697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	45658561	45658561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FANCM	NM_020937	exon20	c.A5336G	p.Q1779R	TTCCACAGAAGGT	.	72	23	88	0	.	569	G	45658561	A	G	45658561	3	3	53	1	0	0	0	0	1	0	0	0	5671	188	7	2	5414	2	FANCM	14	45658561	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	23667535	45658561	61690979	49	7763											
HERC1	8925	broad.mit.edu;bcgsc.ca	37	15	63932493	63932493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HERC1	NM_003922	exon61	c.A11759G	p.N3920S	TTTGGATTCCAGG	.	78	6	167	0	.	666	C	63932493	T	C	63932493	3	2	53	1	0	0	0	0	1	0	0	0	7057	1493	52	2	2898	2	HERC1	15	63932493	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10		63932493	38598899	50	7764											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	348180	348180	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AXIN1	NM_181050	exon6	c.1326delC	p.P442fs	CCAAGCGGGGGCG	.	12	10	53	0	.	684	-	348180	G	-	348180	7	5	53	1	0	1	0	1	0	0	0	0	1236	1103	39	0	1286	0	AXIN1	16	348180	Frame_Shift_Del	DEL	G	TCGA-DD-A11B-01A-11D-A16Z-10		348180	90006573	51	7765											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51171120	51171120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SALL1	NM_002968	exon3	c.C3878T	p.P1293L	GCCAGGGGAGCAT	.	44	29	172	0	.	98	A	51171120	G	A	51171120	3	1	53	1	0	0	0	0	1	0	0	0	13810	1232	43	3	100	3	SALL1	16	51171120	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	50822940	51171120	39183633	52	7766											
MIS12	79003	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	5392627	5392627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MIS12	NM_001258220	exon2	c.C445T	p.Q149X	ATTGTTCAGGCCA	.	102	9	168	0	.	90	T	5392627	C	T	5392627	4	4	53	1	0	0	0	0	0	1	0	0	9594	827	29	3	447	3	MIS12	17	5392627	Nonsense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10		5392627	75802583	53	7767											
DNAH9	1770	broad.mit.edu;bcgsc.ca	37	17	11795184	11795184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DNAH9	NM_001372	exon58	c.A11203G	p.T3735A	AGCATAACCTTCT	.	81	5	188	0	.	168	G	11795184	A	G	11795184	3	3	53	1	0	0	0	0	1	0	0	0	4608	43	2	2	11433	2	DNAH9	17	11795184	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	6402557	11795184	69400026	54	7768											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17719328	17719328	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SREBF1	NM_001005291	exon13	c.C2319T	p.S773S	GGCACTGCTCAGG	.	57	21	106	0	.	91	A	17719328	G	A	17719328	2	1	53	1	0	0	0	0	0	0	0	1	15140	1310	46	3		3	SREBF1	17	17719328	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	5924144	17719328	63475882	55	7769											
VEZF1	7716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56052168	56052168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VEZF1	NM_007146	exon6	c.C1232G	p.T411S	GACATAGTCCCAG	.	176	74	268	0	.	136	C	56052168	G	C	56052168	3	2	53	1	0	0	0	0	1	0	0	0	17152	1029	36	4	337	4	VEZF1	17	56052168	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	38332840	56052168	25143042	56	7770											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57738828	57738828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CLTC	NM_004859	exon8	c.A1192G	p.I398V	GACACTATCCGTC	.	83	32	141	0	.	835	G	57738828	A	G	57738828	3	3	53	1	0	0	0	0	1	0	0	0	3566	449	16	2	1222	2	CLTC	17	57738828	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	1686660	57738828	23456382	57	7771											
CCDC40	55036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78011929	78011929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC40	NM_017950	exon2	c.C37T	p.P13S	TCCCATCCGGAAG	.	73	35	107	0	.	71	T	78011929	C	T	78011929	3	4	53	1	0	0	0	0	1	0	0	0	2812	855	30	3	43	3	CCDC40	17	78011929	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	20273101	78011929	3183281	58	7772											
CPLX4	339302	ucsc.edu;bcgsc.ca	37	18	56979978	56979978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CPLX4	NM_181654	exon2	c.A194G	p.Q65R	TTTTTCTGTGTAA	.	38	4	190	0	.	91	C	56979978	T	C	56979978	3	2	53	1	0	0	0	0	1	0	0	0	3807	1580	55	2	296	2	CPLX4	18	56979978	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10		56979978	21097270	59	7773											
STK11	6794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1221320	1221320	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	STK11,NS,carcinoma,+1	STK11	NM_000455	exon6	c.G843A	p.P281P	CCCCCCGCTCTCT	.	43	16	45	0	.	5227	A	1221320	G	A	1221320	2	1	53	1	0	0	0	0	0	0	0	1	15286	1074	38	1		1	STK11	19	1221320	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10		1221320	57907663	60	7774											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6682236	6682236	+	Missense_Mutation	SNP	G	G	C	rs148227405	alternate_allele	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C3	NM_000064	exon34	c.C4177G	p.R1393G	CTCCCCGGTACCT	.	55	20	148	0	G|1.000;A|0.000	95	C	6682236	G	C	6682236	3	2	53	1	0	0	0	0	1	0	0	0	2204	1115	39	4	846	4	C3	19	6682236	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	5460916	6682236	52446747	61	7775											
RGL3	57139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11517408	11517408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RGL3	NM_001035223	exon6	c.T770A	p.L257H	TCTATGAGGGTCA	.	30	18	69	0	.	227	T	11517408	A	T	11517408	3	4	53	1	0	0	0	0	1	0	0	0	13278	304	11	4	1436	4	RGL3	19	11517408	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	4835172	11517408	47611575	62	7776											
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12975699	12975699	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MAST1	NM_014975	exon13	c.G1443T	p.T481T	TGAGACGGTGCTA	.	54	26	143	0	.	523	T	12975699	G	T	12975699	2	4	53	1	0	0	0	0	0	0	0	1	9324	1103	39	1		1	MAST1	19	12975699	Silent	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	1458291	12975699	46153284	63	7777											
CCDC105	126402	ucsc.edu;bcgsc.ca	37	19	15122125	15122125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC105	NM_173482	exon1	c.A488G	p.H163R	CCGACCACAGGCT	.	43	4	41	1	.	91	G	15122125	A	G	15122125	3	3	53	1	0	0	0	0	1	0	0	0	2740	159	6	2	490	2	CCDC105	19	15122125	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	2146426	15122125	44006858	64	7778											
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15350762	15350762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	BRD4	NM_058243	exon15	c.C3241T	p.H1081Y	ACTGGTGGGTCAG	.	96	43	199	0	.	767	A	15350762	G	A	15350762	3	1	53	1	0	0	0	0	1	0	0	0	1504	1348	47	3	871	3	BRD4	19	15350762	Missense_Mutation	SNP	G	TCGA-DD-A11B-01A-11D-A16Z-10	228637	15350762	43778221	65	7779											
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu	37	19	34791642	34791642	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIAA0355	NM_014686	exon2	c.C264T	p.N88N	CCTGAACGTCTTC	.	72	5	135	0	.	91	T	34791642	C	T	34791642	2	4	53	1	0	0	0	0	0	0	0	1	8170	535	19	1		1	KIAA0355	19	34791642	Silent	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	19440880	34791642	24337341	66	7780											
ZNF302	55900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35174079	35174079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_018443	exon4	c.A150G	p.P50P	TAAGCCATATGTG	.	108	44	181	0	.	.	G	35174079	A	G	35174079	2	3	53	1	0	0	0	0	0	0	0	1	17829	204	8	2		2	ZNF302	19	35174079	Silent	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10	382437	35174079	23954904	67	7781											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36211168	36211168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MLL4	NM_014727	exon3	c.T919C	p.F307L	ATCAAGTTTGTTT	.	66	27	54	0	.	697	C	36211168	T	C	36211168	3	2	53	1	0	0	0	0	1	0	0	0	9623	1725	60	2	929	2	MLL4	19	36211168	Missense_Mutation	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10	1037089	36211168	22917815	68	7782											
MN1	4330	broad.mit.edu;mdanderson.org	37	22	28194927	28194927	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MN1	NM_002430	exon1	c.G1605A	p.Q535Q	CTGCTGCTGCTGT	.	36	9	20	1	.	993	T	28194927	C	T	28194927	2	4	53	1	0	0	0	0	0	0	0	1	9673	796	28	3		3	MN1	22	28194927	Silent	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10		28194927	23109639	69	7783											
HDAC10	83933	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50688345	50688345	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HDAC10	NM_032019	exon5	c.G438T	p.V146V	GTTGAACACACAG	.	63	29	77	2	.	226	A	50688345	C	A	50688345	2	1	53	1	0	0	0	0	0	0	0	1	7005	465	17	3		3	HDAC10	22	50688345	Silent	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	22493418	50688345	616221	70	7784											
FAM104B	90736	ucsc.edu;bcgsc.ca	37	X	55172691	55172691	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FAM104B	NM_001166699	exon3	c.A177G	p.R59R	ACTTGCTCTCTCT	.	38	4	55	0	.	130	C	55172691	T	C	55172691	2	2	53	1	0	0	0	0	0	0	0	1	5386	1548	54	2		2	FAM104B	23	55172691	Silent	SNP	T	TCGA-DD-A11B-01A-11D-A16Z-10		55172691	100097869	71	7785											
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149814213	149814213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MTM1	NM_000252	exon9	c.C736T	p.L246F	CAGCCTCTTGTCG	.	119	104	177	0	.	228	T	149814213	C	T	149814213	3	4	53	1	0	0	0	0	1	0	0	0	9937	913	32	3	766	3	MTM1	23	149814213	Missense_Mutation	SNP	C	TCGA-DD-A11B-01A-11D-A16Z-10	94641522	149814213	5456347	72	7786											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	4925135	4925135	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_032972	exon1	c.A271T	p.T91S	TTGACAACTACTA	.	219	11	275	0	.	.	T	4925135	A	T	4925135	3	4	53	1	0	0	0	0	1	0	0	0	11509	43	2	4	309	4	PCDH11Y	24	4925135	Missense_Mutation	SNP	A	TCGA-DD-A11B-01A-11D-A16Z-10		4925135	54448431	73	7787											
PRAMEF2	65122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12920107	12920107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PRAMEF2	NM_023014	exon3	c.C847T	p.H283Y	AGTGGGCACCTGG	.	58	20	91	0	.	68	T	12920107	C	T	12920107	3	4	54	1	0	0	0	0	1	0	0	0	12435	710	25	3	853	3	PRAMEF2	1	12920107	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10		12920107	236330514	1	7788											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16257658	16257658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SPEN	NM_015001	exon11	c.T4923G	p.S1641R	TCCAAGTGTCACA	.	64	20	68	0	.	298	G	16257658	T	G	16257658	3	3	54	1	0	0	0	0	1	0	0	0	15037	1693	59	5	4965	5	SPEN	1	16257658	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	3337551	16257658	232992963	2	7789											
CROCC	9696	ucsc.edu;bcgsc.ca	37	1	17274950	17274950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CROCC	NM_014675	exon18	c.G2639A	p.G880D	ACGCTGGCCTGGC	.	26	4	41	0	.	137	A	17274950	G	A	17274950	3	1	54	1	0	0	0	0	1	0	0	0	3893	1203	42	3	2709	3	CROCC	1	17274950	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	1017292	17274950	231975671	3	7790											
OTUD3	23252	ucsc.edu;bcgsc.ca	37	1	20234091	20234091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_015207	exon8	c.A1049G	p.Q350R	AACAGCAGTGGAT	.	22	5	55	1	.	.	G	20234091	A	G	20234091	3	3	54	1	0	0	0	0	1	0	0	0	11313	188	7	2	1079	2	OTUD3	1	20234091	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	2959141	20234091	229016530	4	7791											
PLA2G2E	30814	ucsc.edu;bcgsc.ca	37	1	20248851	20248851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PLA2G2E	NM_014589	exon3	c.G226A	p.G76S	CACAGCCCAGCTT	.	42	4	113	0	.	90	T	20248851	C	T	20248851	3	4	54	1	0	0	0	0	1	0	0	0	11998	623	22	3	210	3	PLA2G2E	1	20248851	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	14760	20248851	229001770	5	7792											
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33799862	33799862	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PHC2	NM_198040	exon9	c.C1587T	p.T529T	GAGGTCGGTCAGT	.	108	48	98	0	.	227	A	33799862	G	A	33799862	2	1	54	1	0	0	0	0	0	0	0	1	11817	1103	39	1		1	PHC2	1	33799862	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	13551011	33799862	215450759	6	7793											
CSMD2	114784	ucsc.edu;bcgsc.ca	37	1	34037319	34037319	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CSMD2	NM_052896	exon52	c.T7776C	p.T2592T	AGGACAAGTCACA	.	42	4	60	0	.	103	G	34037319	A	G	34037319	2	3	54	1	0	0	0	0	0	0	0	1	3945	59	3	2		2	CSMD2	1	34037319	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	237457	34037319	215213302	7	7794											
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43649280	43649280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR65	NM_001195831	exon4	c.G493C	p.D165H	CCACAGGATAACA	.	80	40	140	0	.	91	C	43649280	G	C	43649280	3	2	54	1	0	0	0	0	1	0	0	0	17313	1174	41	4	503	4	WDR65	1	43649280	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	9611961	43649280	205601341	8	7795											
TAL1	6886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47685719	47685719	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TAL1	NM_003189	exon4	c.C669T	p.L223L	CTTGCTGAGCTTC	.	178	71	224	0	.	1082	A	47685719	G	A	47685719	2	1	54	1	0	0	0	0	0	0	0	1	15538	1277	45	3		3	TAL1	1	47685719	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	4036439	47685719	201564902	9	7796											
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89573964	89573964	+	Missense_Mutation	SNP	C	C	T	rs200077424		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GBP2	NM_004120	exon11	c.G1670A	p.R557H	AGAAGGCGTTCCT	.	52	20	74	0	C|0.999;T|0.001	91	T	89573964	C	T	89573964	3	4	54	1	0	0	0	0	1	0	0	0	6274	768	27	1	109	1	GBP2	1	89573964	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	41888245	89573964	159676657	10	7797											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103461593	103461593	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	COL11A1	NM_080629	exon27	c.C2283T	p.P761P	ACCAGGGGGACCC	.	20	16	88	0	.	586	A	103461593	G	A	103461593	2	1	54	1	0	0	0	0	0	0	0	1	3667	1219	43	3		3	COL11A1	1	103461593	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	13887629	103461593	145789028	11	7798											
AMPD1	270	ucsc.edu;bcgsc.ca	37	1	115218550	115218550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	AMPD1	NM_000036	exon11	c.A1562G	p.E521G	GTGGCCTCAAACA	.	28	4	42	0	.	293	C	115218550	T	C	115218550	3	2	54	1	0	0	0	0	1	0	0	0	585	1551	54	2	804	2	AMPD1	1	115218550	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	11756957	115218550	134032071	12	7799											
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	145474731	145474731	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD34A	NM_001039888	exon4	c.T1403A	p.L468X	GCAAATTGGTGAG	.	43	16	27	0	.	68	A	145474731	T	A	145474731	4	1	54	1	0	0	0	0	0	1	0	0	662	1821	63	4	1405	4	ANKRD34A	1	145474731	Nonsense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	30256181	145474731	103775890	13	7800											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152280175	152280175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FLG	NM_002016	exon3	c.A7187G	p.H2396R	TCTTGGTGGCTCT	.	404	106	393	1	.	106	C	152280175	T	C	152280175	3	2	54	1	0	0	0	0	1	0	0	0	5922	1696	59	2	5002	2	FLG	1	152280175	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	6805444	152280175	96970446	14	7801											
FLAD1	80308	ucsc.edu;bcgsc.ca	37	1	154956204	154956204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FLAD1	NM_025207	exon1	c.A34G	p.R12G	TTCCAGAGGCAGG	.	41	4	54	0	.	93	G	154956204	A	G	154956204	3	3	54	1	0	0	0	0	1	0	0	0	5920	295	11	2	36	2	FLAD1	1	154956204	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	2676029	154956204	94294417	15	7802											
VANGL2	57216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160388869	160388869	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VANGL2	NM_020335	exon4	c.C270T	p.R90R	CACACGCATCGCC	.	115	21	67	0	.	91	T	160388869	C	T	160388869	2	4	54	1	0	0	0	0	0	0	0	1	17117	697	25	3		3	VANGL2	1	160388869	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	5432665	160388869	88861752	16	7803											
SLC19A2	10560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169446920	169446920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC19A2	NM_006996	exon2	c.T280C	p.Y94H	GGAGGTAGTCTGT	.	180	57	141	2	.	90	G	169446920	A	G	169446920	3	3	54	1	0	0	0	0	1	0	0	0	14429	420	15	2	1233	2	SLC19A2	1	169446920	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	9058051	169446920	79803701	17	7804											
FAM20B	9917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179013021	179013021	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM20B	NM_014864	exon2	c.C39T	p.L13L	AATTCTCCTTGTC	.	209	75	127	0	.	93	T	179013021	C	T	179013021	2	4	54	1	0	0	0	0	0	0	0	1	5538	842	30	3		3	FAM20B	1	179013021	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	9566101	179013021	70237600	18	7805											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200960199	200960199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF21B	NM_017596	exon18	c.G2533T	p.D845Y	CAGAGTCCAGCAT	.	171	47	121	0	.	96	A	200960199	C	A	200960199	3	1	54	1	0	0	0	0	1	0	0	0	8289	855	30	3	2409	3	KIF21B	1	200960199	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	21947178	200960199	48290422	19	7806											
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205084043	205084043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RBBP5	NM_005057	exon3	c.C92T	p.T31I	TTAAAGGTGCAAG	.	369	120	192	0	.	226	A	205084043	G	A	205084043	3	1	54	1	0	0	0	0	1	0	0	0	13102	1261	44	3	1572	3	RBBP5	1	205084043	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	4123844	205084043	44166578	20	7807											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214557484	214557484	+	Missense_Mutation	SNP	G	G	A	rs200947677		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PTPN14	NM_005401	exon13	c.C1714T	p.R572W	GTGGCCGTGGGTA	.	54	18	55	0	G|0.999;A|0.001	290	A	214557484	G	A	214557484	3	1	54	1	0	0	0	0	1	0	0	0	12783	1144	40	1	1877	1	PTPN14	1	214557484	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	9473441	214557484	34693137	21	7808											
ACTN2	88	ucsc.edu;bcgsc.ca	37	1	236906333	236906333	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACTN2	NM_001103	exon11	c.T1245C	p.T415T	CGAGACTTGGGCT	.	40	4	59	0	.	95	C	236906333	T	C	236906333	2	2	54	1	0	0	0	0	0	0	0	1	205	1596	56	2		2	ACTN2	1	236906333	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	22348849	236906333	12344288	22	7809											
ZNF695	57116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247162655	247162655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001204221	exon3	c.A254G	p.H85R	CCTGAGTGTCTGG	.	196	85	310	0	.	.	C	247162655	T	C	247162655	3	2	54	1	0	0	0	0	1	0	0	0	18095	1696	59	2	1301	2	ZNF695	1	247162655	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	10256322	247162655	2087966	23	7810											
OR11L1	391189	broad.mit.edu;bcgsc.ca	37	1	248004537	248004537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR11L1	NM_001001959	exon1	c.T662C	p.I221T	GACACAATGAAAA	.	115	6	150	0	.	71	G	248004537	A	G	248004537	3	3	54	1	0	0	0	0	1	0	0	0	10930	101	4	2	310	2	OR11L1	1	248004537	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	841882	248004537	1246084	24	7811											
DTNB	1838	ucsc.edu;bcgsc.ca	37	2	25799831	25799831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DTNB	NM_021907	exon8	c.T752C	p.M251T	CCCATCATACTCT	.	44	4	89	0	.	137	G	25799831	A	G	25799831	3	3	54	1	0	0	0	0	1	0	0	0	4789	217	8	2	1183	2	DTNB	2	25799831	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10		25799831	217399542	25	7812											
BIRC6	57448	ucsc.edu;bcgsc.ca	37	2	32773060	32773060	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	BIRC6	NM_016252	exon64	c.A12954G	p.E4318E	AGAGGAACATGTT	.	45	4	77	0	.	233	G	32773060	A	G	32773060	2	3	54	1	0	0	0	0	0	0	0	1	1438	40	2	2		2	BIRC6	2	32773060	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	6973229	32773060	210426313	26	7813											
EFEMP1	2202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56094351	56094351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	EFEMP1	NM_001039349	exon11	c.G1339T	p.A447S	GCATTGCACTTAC	.	36	18	83	1	.	520	A	56094351	C	A	56094351	3	1	54	1	0	0	0	0	1	0	0	0	4941	710	25	3	146	3	EFEMP1	2	56094351	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	23321291	56094351	187105022	27	7814											
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	63282697	63282698	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OTX1	NM_014562	exon5	c.311_312del	p.104_104del	GAACCAAGAGCCG	.	92	22	173	0	.	70	-	63282698	AG	-	63282697	7	5	54	1	0	1	0	1	0	0	0	0	11320	72	3	0	321	0	OTX1	2	63282697	Frame_Shift_Del	DEL	AG	TCGA-DD-A11C-01A-11D-A12Z-10	7188346	63282697	179916676	28	7815											
SUCLG1	8802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84660559	84660559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SUCLG1	NM_003849	exon6	c.G590A	p.G197D	ACAATGCCTTAAC	.	81	34	172	0	.	90	T	84660559	C	T	84660559	3	4	54	1	0	0	0	0	1	0	0	0	15363	753	26	3	466	3	SUCLG1	2	84660559	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	21377862	84660559	158538814	29	7816											
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84881832	84881832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DNAH6	NM_001370	exon35	c.A5683G	p.M1895V	TGTGGAATGGTGT	.	114	6	216	0	.	69	G	84881832	A	G	84881832	3	3	54	1	0	0	0	0	1	0	0	0	4605	101	4	2	5817	2	DNAH6	2	84881832	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	221273	84881832	158317541	30	7817											
ST3GAL5	8869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86075030	86075030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ST3GAL5	NM_003896	exon4	c.G616A	p.G206R	CTAATCCGTGCAG	.	36	5	49	0	.	90	T	86075030	C	T	86075030	3	4	54	1	0	0	0	0	1	0	0	0	15217	661	23	1	656	1	ST3GAL5	2	86075030	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	1193198	86075030	157124343	31	7818											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160053178	160053178	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TANC1	NM_033394	exon18	c.C3039T	p.H1013H	GGGCCACGGTGAC	.	100	34	106	0	.	92	T	160053178	C	T	160053178	2	4	54	1	0	0	0	0	0	0	0	1	15541	535	19	1		1	TANC1	2	160053178	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	73978148	160053178	83146195	32	7819											
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208865840	208865840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PLEKHM3	NM_001080475	exon2	c.A524G	p.Q175R	AATGGCTGCTGCT	.	156	84	168	0	.	23	C	208865840	T	C	208865840	3	2	54	1	0	0	0	0	1	0	0	0	12082	1580	55	2	1789	2	PLEKHM3	2	208865840	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	48812662	208865840	34333533	33	7820											
USP40	55230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234394614	234394614	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	USP40	NM_018218	exon28	c.C3240T	p.D1080D	CAGCACGTCCTGG	.	9	9	22	0	.	455	A	234394614	G	A	234394614	2	1	54	1	0	0	0	0	0	0	0	1	17069	1136	40	1		1	USP40	2	234394614	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	25528774	234394614	8804759	34	7821											
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18436227	18436227	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SATB1	NM_002971	exon7	c.T933A	p.P311P	ACTGATAGGTGTT	.	103	60	156	0	.	228	T	18436227	A	T	18436227	2	4	54	1	0	0	0	0	0	0	0	1	13853	407	15	4		4	SATB1	3	18436227	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10		18436227	179586203	35	7822											
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50095360	50095360	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RBM6	NM_005777	exon9	c.G1893A	p.R631R	TCGAAGGGAAGGG	.	52	35	49	0	.	280	A	50095360	G	A	50095360	2	1	54	1	0	0	0	0	0	0	0	1	13144	1223	43	3		3	RBM6	3	50095360	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	31659133	50095360	147927070	36	7823											
CISH	1154	hgsc.bcm.edu;bcgsc.ca	37	3	50645109	50645109	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CISH	NM_013324	exon4	c.757delG	p.A253fs	CGTCGGCCACCAG	.	76	46	140	0	.	710	-	50645109	C	-	50645109	7	5	54	1	0	1	0	1	0	0	0	0	3437	739	26	0	74	0	CISH	3	50645109	Frame_Shift_Del	DEL	C	TCGA-DD-A11C-01A-11D-A12Z-10	549749	50645109	147377321	37	7824											
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119087231	119087231	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ARHGAP31	NM_020754	exon3	c.C216G	p.G72G	GTTTGGCTCAGAT	.	86	57	86	0	.	92	G	119087231	C	G	119087231	2	3	54	1	0	0	0	0	0	0	0	1	880	784	28	4		4	ARHGAP31	3	119087231	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	68442122	119087231	78935199	38	7825											
IFT80	57560	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	159976324	159976324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	IFT80	NM_020800	exon20	c.T2323C	p.L775L	GCTTTAAACCTAT	.	189	121	292	2	.	522	G	159976324	A	G	159976324	2	3	54	1	0	0	0	0	0	0	0	1	7564	11	1	2		2	IFT80	3	159976324	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	40889093	159976324	38046106	39	7826											
PAK2	5062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196547330	196547330	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PAK2	NM_002577	exon13	c.G1242A	p.V414V	AGAGGTGGTTACA	.	146	40	135	0	.	957	A	196547330	G	A	196547330	2	1	54	1	0	0	0	0	0	0	0	1	11401	1335	47	3		3	PAK2	3	196547330	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	36571006	196547330	1475100	40	7827											
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3494936	3494936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DOK7	NM_173660	exon7	c.C1223A	p.P408Q	ACACACCACGCAG	.	33	4	63	0	.	91	A	3494936	C	A	3494936	3	1	54	1	0	0	0	0	1	0	0	0	4702	594	21	3	1249	3	DOK7	4	3494936	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10		3494936	187659340	41	7828											
SORCS2	57537	ucsc.edu;bcgsc.ca	37	4	7716009	7716009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SORCS2	NM_020777	exon16	c.A2032G	p.R678G	CGGAAAAGAAAGT	.	45	4	48	0	.	91	G	7716009	A	G	7716009	3	3	54	1	0	0	0	0	1	0	0	0	14931	64	3	2	2094	2	SORCS2	4	7716009	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	4221073	7716009	183438267	42	7829											
FGFBP1	9982	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15938165	15938165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FGFBP1	NM_005130	exon3	c.C91A	p.L31I	TGTGAAGTCCATT	.	300	107	318	2	.	90	T	15938165	G	T	15938165	3	4	54	1	0	0	0	0	1	0	0	0	5860	1029	36	3	617	3	FGFBP1	4	15938165	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	8222156	15938165	175216111	43	7830											
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44697656	44697656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GUF1	NM_021927	exon15	c.A1740T	p.K580N	TGGCAAAGCCATA	.	63	35	69	0	.	91	T	44697656	A	T	44697656	3	4	54	1	0	0	0	0	1	0	0	0	6899	69	3	4	1798	4	GUF1	4	44697656	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	28759491	44697656	146456620	44	7831											
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47939598	47939598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CNGA1	NM_001142564	exon10	c.A1120G	p.M374V	TATACATAACAAG	.	92	43	140	0	.	92	C	47939598	T	C	47939598	3	2	54	1	0	0	0	0	1	0	0	0	3596	1406	49	2	1163	2	CNGA1	4	47939598	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	3241942	47939598	143214678	45	7832											
DCUN1D4	23142	broad.mit.edu;ucsc.edu	37	4	52779748	52779748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DCUN1D4	NM_001040402	exon11	c.T877C	p.X293Q	ATGTCCTAGGACT	.	34	5	48	0	.	92	C	52779748	T	C	52779748	3	2	54	1	0	0	0	0	1	0	0	0	4316	1535	53	2	919	2	DCUN1D4	4	52779748	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	4840150	52779748	138374528	46	7833											
TACR3	6870	ucsc.edu;bcgsc.ca	37	4	104640338	104640338	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TACR3	NM_001059	exon1	c.T495C	p.P165P	TGTGATAGGAAAG	.	26	4	75	0	.	525	G	104640338	A	G	104640338	2	3	54	1	0	0	0	0	0	0	0	1	15504	407	15	2		2	TACR3	4	104640338	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	51860590	104640338	86513938	47	7834											
GSTCD	79807	ucsc.edu;bcgsc.ca	37	4	106647833	106647833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GSTCD	NM_001031720	exon4	c.C992T	p.A331V	AAACAGCAGCTTC	.	38	4	115	0	.	92	T	106647833	C	T	106647833	3	4	54	1	0	0	0	0	1	0	0	0	6835	710	25	3	1002	3	GSTCD	4	106647833	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	2007495	106647833	84506443	48	7835											
TBC1D9	23158	ucsc.edu;bcgsc.ca	37	4	141622704	141622704	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TBC1D9	NM_015130	exon2	c.C195A	p.I65I	GTACAAGATTCGG	.	26	4	89	0	.	23	T	141622704	G	T	141622704	2	4	54	1	0	0	0	0	0	0	0	1	15624	932	33	3		3	TBC1D9	4	141622704	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	34974871	141622704	49531572	49	7836											
GAB1	2549	ucsc.edu;bcgsc.ca	37	4	144381615	144381615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GAB1	NM_207123	exon9	c.A1868G	p.N623S	CCATGAACCCAAA	.	45	5	57	0	.	1146	G	144381615	A	G	144381615	3	3	54	1	0	0	0	0	1	0	0	0	6148	43	2	2	1902	2	GAB1	4	144381615	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	2758911	144381615	46772661	50	7837											
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10288612	10288612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CMBL	NM_138809	exon3	c.A245T	p.Q82L	GGCTCTTGCCCTA	.	60	16	57	0	.	69	A	10288612	T	A	10288612	3	1	54	1	0	0	0	0	1	0	0	0	3576	1812	63	4	508	4	CMBL	5	10288612	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10		10288612	170626648	51	7838											
TRIO	7204	ucsc.edu;bcgsc.ca	37	5	14502722	14502722	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRIO	NM_007118	exon54	c.A8367G	p.K2789K	CTGGAAAGACAAC	.	38	4	58	0	.	562	G	14502722	A	G	14502722	2	3	54	1	0	0	0	0	0	0	0	1	16549	69	3	2		2	TRIO	5	14502722	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	4214110	14502722	166412538	52	7839											
PDZD2	23037	ucsc.edu;bcgsc.ca	37	5	32090075	32090075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PDZD2	NM_178140	exon19	c.T6521C	p.L2174P	CCTCCCTTCAAAC	.	42	4	100	0	.	563	C	32090075	T	C	32090075	3	2	54	1	0	0	0	0	1	0	0	0	11701	1609	56	2	6595	2	PDZD2	5	32090075	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	17587353	32090075	148825185	53	7840											
MCTP1	79772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94275895	94275895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MCTP1	NM_024717	exon5	c.A1066G	p.T356A	CATCTGTGGGCCT	.	16	6	53	0	.	92	C	94275895	T	C	94275895	3	2	54	1	0	0	0	0	1	0	0	0	9400	1696	59	2	2009	2	MCTP1	5	94275895	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	62185820	94275895	86639365	54	7841											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189232	139189232	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PSD2	NM_032289	exon2	c.T207C	p.H69H	CTTCCATGGCCTC	.	168	88	231	0	.	91	C	139189232	T	C	139189232	2	2	54	1	0	0	0	0	0	0	0	1	12647	1461	51	2		2	PSD2	5	139189232	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	44913337	139189232	41726028	55	7842											
MRPL22	29093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	154346429	154346429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MRPL22	NM_014180	exon7	c.G593A	p.R198H	AGCTTCGCAGCCG	.	63	33	49	0	.	90	A	154346429	G	A	154346429	3	1	54	1	0	0	0	0	1	0	0	0	9788	1087	38	1	619	1	MRPL22	5	154346429	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	15157197	154346429	26568831	56	7843											
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17640200	17640200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NUP153	NM_005124	exon15	c.G1816C	p.G606R	CACTTCCTTCTTT	.	78	24	92	0	.	637	G	17640200	C	G	17640200	3	3	54	1	0	0	0	0	1	0	0	0	10755	690	24	4	2643	4	NUP153	6	17640200	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10		17640200	153474867	57	7844											
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080221	29080221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR2J3	NM_001005216	exon1	c.C554A	p.P185Q	AAGTTCCAGCACT	.	301	85	328	0	.	90	A	29080221	C	A	29080221	3	1	54	1	0	0	0	0	1	0	0	0	11004	594	21	3	556	3	OR2J3	6	29080221	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	11440021	29080221	142034846	58	7845											
LTA	4049	ucsc.edu;bcgsc.ca	37	6	31540523	31540523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LTA	NM_001159740	exon2	c.A4G	p.T2A	CCCATGACACCAC	.	48	4	40	0	.	522	G	31540523	A	G	31540523	3	3	54	1	0	0	0	0	1	0	0	0	9068	275	10	2	6	2	LTA	6	31540523	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	2460302	31540523	139574544	59	7846											
MSH5	4439	broad.mit.edu;ucsc.edu	37	6	31729292	31729292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MSH5	NM_025259	exon22	c.T2135C	p.L712P	ACTGGCTGGCACG	.	26	4	62	1	.	661	C	31729292	T	C	31729292	3	2	54	1	0	0	0	0	1	0	0	0	9873	1580	55	2	2217	2	MSH5	6	31729292	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	188769	31729292	139385775	60	7847											
NOTCH4	4855	ucsc.edu;bcgsc.ca	37	6	32169089	32169089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NOTCH4	NM_004557	exon22	c.T3944C	p.L1315P	CGGGCCAGGGCAA	.	43	4	85	0	.	1321	G	32169089	A	G	32169089	3	3	54	1	0	0	0	0	1	0	0	0	10551	188	7	2	2103	2	NOTCH4	6	32169089	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	439797	32169089	138945978	61	7848											
NOTCH4	4855	ucsc.edu;bcgsc.ca	37	6	32183154	32183154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NOTCH4	NM_004557	exon12	c.T1870C	p.C624R	CCTCACAGAGCTG	.	45	4	92	0	.	1321	G	32183154	A	G	32183154	3	3	54	1	0	0	0	0	1	0	0	0	10551	188	7	2	4217	2	NOTCH4	6	32183154	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	14065	32183154	138931913	62	7849											
RING1	6015	broad.mit.edu;bcgsc.ca	37	6	33178961	33178961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RING1	NM_002931	exon5	c.C482T	p.P161L	CGATACCAGGGTC	.	23	3	35	0	.	159	T	33178961	C	T	33178961	3	4	54	1	0	0	0	0	1	0	0	0	13374	594	21	3	496	3	RING1	6	33178961	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	995807	33178961	137936106	63	7850											
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42975774	42975774	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP2R5D	NM_006245	exon7	c.C828T	p.I276I	TTATATCCGTAGG	.	126	70	109	0	.	1082	T	42975774	C	T	42975774	2	4	54	1	0	0	0	0	0	0	0	1	12395	845	30	3		3	PPP2R5D	6	42975774	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	9796813	42975774	128139293	64	7851											
CRIP3	401262	ucsc.edu;bcgsc.ca	37	6	43274203	43274203	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CRIP3	NM_206922	exon5	c.T381C	p.C127C	CTCCCCACAGCCA	.	42	4	65	0	.	91	G	43274203	A	G	43274203	2	3	54	1	0	0	0	0	0	0	0	1	3876	157	6	2		2	CRIP3	6	43274203	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	298429	43274203	127840864	65	7852											
LIN28B	389421	ucsc.edu;bcgsc.ca	37	6	105526351	105526351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LIN28B	NM_001004317	exon4	c.A446G	p.K149R	AGCCAAAGAAGTG	.	27	4	61	0	.	90	G	105526351	A	G	105526351	3	3	54	1	0	0	0	0	1	0	0	0	8806	72	3	2	460	2	LIN28B	6	105526351	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	62252148	105526351	65588716	66	7853											
TRDN	10345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	123825006	123825006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRDN	NM_001256020	exon8	c.G651T	p.K217N	TTTAGTCTTTTCT	.	248	209	510	0	.	91	A	123825006	C	A	123825006	3	1	54	1	0	0	0	0	1	0	0	0	16465	912	32	3	1674	3	TRDN	6	123825006	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	18298655	123825006	47290061	67	7854											
MAP7	9053	ucsc.edu;bcgsc.ca	37	6	136682317	136682317	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MAP7	NM_001198609	exon12	c.A1617G	p.R539R	CTTTTGTCTGGAA	.	13	4	20	0	.	90	C	136682317	T	C	136682317	2	2	54	1	0	0	0	0	0	0	0	1	9266	1681	58	2		2	MAP7	6	136682317	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	12857311	136682317	34432750	68	7855											
KIAA1244	57221	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138612924	138612924	+	Silent	SNP	G	G	A	rs140287471		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA1244	NM_020340	exon19	c.G3102A	p.S1034S	TGCCTCGCAGCCC	.	85	32	135	1	G|1.000;A|0.000	228	A	138612924	G	A	138612924	2	1	54	1	0	0	0	0	0	0	0	1	8217	1074	38	1		1	KIAA1244	6	138612924	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	1930607	138612924	32502143	69	7856											
SASH1	23328	ucsc.edu;bcgsc.ca	37	6	148869462	148869462	+	Missense_Mutation	SNP	G	G	T	rs143577116	byfrequency;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SASH1	NM_015278	exon20	c.G3512T	p.R1171L	TCTGCCGAAAGCC	.	43	4	57	0	G|0.999;A|0.001	90	T	148869462	G	T	148869462	3	4	54	1	0	0	0	0	1	0	0	0	13848	1058	37	1	3590	1	SASH1	6	148869462	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	10256538	148869462	22245605	70	7857											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5662625	5662625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RNF216	NM_207111	exon17	c.A2638G	p.M880V	GCCCCATGTTGAG	.	63	17	115	0	.	274	C	5662625	T	C	5662625	3	2	54	1	0	0	0	0	1	0	0	0	13480	1464	51	2	137	2	RNF216	7	5662625	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10		5662625	153476038	71	7858											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48467402	48467402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ABCA13	NM_152701	exon42	c.C12499T	p.H4167Y	AAATCTCACATTG	.	106	52	151	0	.	521	T	48467402	C	T	48467402	3	4	54	1	0	0	0	0	1	0	0	0	31	826	29	3	12494	3	ABCA13	7	48467402	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	42804777	48467402	110671261	72	7859											
ZNF713	349075	ucsc.edu;bcgsc.ca	37	7	56007647	56007647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF713	NM_182633	exon4	c.A1241G	p.E414G	TATGTGAATATAA	.	50	4	50	0	.	92	G	56007647	A	G	56007647	3	3	54	1	0	0	0	0	1	0	0	0	18114	246	9	2	1255	2	ZNF713	7	56007647	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	7540245	56007647	103131016	73	7860											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88966173	88966173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF804B	NM_181646	exon4	c.C3877T	p.P1293S	TTTATTCCTACAT	.	127	62	211	0	.	101	T	88966173	C	T	88966173	3	4	54	1	0	0	0	0	1	0	0	0	18168	855	30	3	3891	3	ZNF804B	7	88966173	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	32958526	88966173	70172490	74	7861											
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97481701	97481701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ASNS	NM_133436	exon13	c.G1556A	p.R519H	ACTTGACGGTAGT	.	125	50	135	0	.	91	T	97481701	C	T	97481701	3	4	54	1	0	0	0	0	1	0	0	0	1048	536	19	1	133	1	ASNS	7	97481701	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	8515528	97481701	61656962	75	7862											
ALKBH4	54784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102100057	102100057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ALKBH4	NM_017621	exon2	c.G315T	p.R105S	CTGCTTCCTCCGT	.	29	12	56	0	.	90	A	102100057	C	A	102100057	3	1	54	1	0	0	0	0	1	0	0	0	529	854	30	3	601	3	ALKBH4	7	102100057	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	4618356	102100057	57038606	76	7863											
LRRN3	54674	ucsc.edu;bcgsc.ca	37	7	110763773	110763773	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRN3	NM_018334	exon2	c.A945G	p.E315E	AATAGAAGCTACT	.	40	4	56	0	.	154	G	110763773	A	G	110763773	2	3	54	1	0	0	0	0	0	0	0	1	9036	69	3	2		2	LRRN3	7	110763773	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	8663716	110763773	48374890	77	7864											
TNKS	8658	ucsc.edu;bcgsc.ca	37	8	9622231	9622231	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TNKS	NM_003747	exon23	c.A3378G	p.Q1126Q	GATGCAAAGTACT	.	44	4	86	0	.	660	G	9622231	A	G	9622231	2	3	54	1	0	0	0	0	0	0	0	1	16316	11	1	2		2	TNKS	8	9622231	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10		9622231	136741791	78	7865											
INTS10	55174	ucsc.edu;bcgsc.ca	37	8	19682425	19682425	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	INTS10	NM_018142	exon8	c.G948A	p.L316L	CATGCTGGTCTTC	.	43	4	105	0	.	91	A	19682425	G	A	19682425	2	1	54	1	0	0	0	0	0	0	0	1	7776	1335	47	3		3	INTS10	8	19682425	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	10060194	19682425	126681597	79	7866											
GFRA2	2675	ucsc.edu;bcgsc.ca	37	8	21560353	21560353	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001495	exon7	c.G1182A	p.L394L	GGTCCCCAAGCTG	.	63	7	146	1	.	.	T	21560353	C	T	21560353	2	4	54	1	0	0	0	0	0	0	0	1	6348	593	21	3		3	GFRA2	8	21560353	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	1877928	21560353	124803669	80	7867											
KIF13B	23303	ucsc.edu;bcgsc.ca	37	8	28980997	28980997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF13B	NM_015254	exon28	c.A3365G	p.D1122G	GCATCATCCTCTG	.	16	4	81	0	.	22	C	28980997	T	C	28980997	3	2	54	1	0	0	0	0	1	0	0	0	8275	1435	50	2	2167	2	KIF13B	8	28980997	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	7420644	28980997	117383025	81	7868											
TM2D2	83877	ucsc.edu;bcgsc.ca	37	8	38851161	38851161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TM2D2	NM_078473	exon3	c.A334G	p.S112G	CGTCGCTGTAGGC	.	27	4	56	0	.	90	C	38851161	T	C	38851161	3	2	54	1	0	0	0	0	1	0	0	0	15961	1580	55	2	318	2	TM2D2	8	38851161	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	9870164	38851161	107512861	82	7869											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48839897	48839897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PRKDC	.	.	.	.	CTCAGGCCCAGTT	.	128	31	111	0	.	1515	T	48839897	C	T	48839897	3	4	54	1	0	0	0	0	1	0	0	0	12521	739	26	3	10373	3	PRKDC	8	48839897	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	9988736	48839897	97524125	83	7870											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69021775	69021775	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PREX2	NM_024870	exon25	c.A3063T	p.E1021D	CTTAGAAACCCAA	.	102	29	93	0	.	390	T	69021775	A	T	69021775	3	4	54	1	0	0	0	0	1	0	0	0	12477	11	1	4	3390	4	PREX2	8	69021775	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	20181878	69021775	77342247	84	7871											
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	101118126	101118126	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RGS22	NM_015668	exon1	c.G24T	p.A8A	CCTACCCGCGGTG	.	60	34	40	0	.	140	A	101118126	C	A	101118126	2	1	54	1	0	0	0	0	0	0	0	1	13305	666	23	1		1	RGS22	8	101118126	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	32096351	101118126	45245896	85	7872											
TRAPPC9	83696	ucsc.edu;bcgsc.ca	37	8	141034128	141034128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRAPPC9	NM_031466	exon18	c.A2899G	p.T967A	CTTCAGTGTGGCC	.	46	4	78	0	.	228	C	141034128	T	C	141034128	3	2	54	1	0	0	0	0	1	0	0	0	16462	1696	59	2	865	2	TRAPPC9	8	141034128	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	39916002	141034128	5329894	86	7873											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5920263	5920263	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA2026	NM_001017969	exon8	c.C5733A	p.L1911L	TATAAGGAGAACA	.	53	31	72	0	.	92	T	5920263	G	T	5920263	2	4	54	1	0	0	0	0	0	0	0	1	8270	1161	41	3		3	KIAA2026	9	5920263	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10		5920263	135293168	87	7874											
SH3GL2	6456	ucsc.edu;bcgsc.ca	37	9	17786386	17786386	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SH3GL2	NM_003026	exon4	c.A195G	p.R65R	TTCCAGAGCTAAG	.	42	4	77	0	.	91	G	17786386	A	G	17786386	2	3	54	1	0	0	0	0	0	0	0	1	14251	301	11	2		2	SH3GL2	9	17786386	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	11866123	17786386	123427045	88	7875											
DNAJA1	3301	ucsc.edu;bcgsc.ca	37	9	33037026	33037026	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DNAJA1	NM_001539	exon8	c.G888A	p.K296K	TGTCAAGCATGGA	.	38	4	72	0	.	226	A	33037026	G	A	33037026	2	1	54	1	0	0	0	0	0	0	0	1	4611	962	34	3		3	DNAJA1	9	33037026	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	15250640	33037026	108176405	89	7876											
C9orf24	84688	ucsc.edu;bcgsc.ca	37	9	34385758	34385758	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C9orf24	NM_032596	exon2	c.C157A	p.R53R	CATGTCGCTCCAT	.	36	4	113	0	.	91	T	34385758	G	T	34385758	2	4	54	1	0	0	0	0	0	0	0	1	2475	1095	38	1		1	C9orf24	9	34385758	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	1348732	34385758	106827673	90	7877											
OR13J1	392309	ucsc.edu;bcgsc.ca	37	9	35869605	35869605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR13J1	NM_001004487	exon1	c.A794G	p.K265R	GCTTCCTTACTCT	.	35	4	52	0	.	68	C	35869605	T	C	35869605	3	2	54	1	0	0	0	0	1	0	0	0	10944	1609	56	2	147	2	OR13J1	9	35869605	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	1483847	35869605	105343826	91	7878											
ZNF782	158431	ucsc.edu;bcgsc.ca	37	9	99581617	99581617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF782	NM_001001662	exon6	c.C688T	p.L230F	TAACAAGGGCAGC	.	39	4	93	0	.	90	A	99581617	G	A	99581617	3	1	54	1	0	0	0	0	1	0	0	0	18152	1000	35	3	1415	3	ZNF782	9	99581617	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	63712012	99581617	41631814	92	7879											
PSMD5	5711	ucsc.edu;bcgsc.ca	37	9	123595662	123595662	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PSMD5	NM_005047	exon2	c.G246T	p.R82R	GAGGTTCCGGGCC	.	40	4	62	0	.	90	A	123595662	C	A	123595662	2	1	54	1	0	0	0	0	0	0	0	1	12701	842	30	3		3	PSMD5	9	123595662	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	24014045	123595662	17617769	93	7880											
C5	727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123792742	123792742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C5	NM_001735	exon7	c.A691G	p.I231V	GCTCGATTGAGAC	.	186	88	389	0	.	92	C	123792742	T	C	123792742	3	2	54	1	0	0	0	0	1	0	0	0	2280	1493	52	2	4479	2	C5	9	123792742	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	197080	123792742	17420689	94	7881											
FAM102A	399665	ucsc.edu;bcgsc.ca	37	9	130705487	130705487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM102A	NM_001035254	exon11	c.T1139C	p.V380A	TCAATCACAACTG	.	44	4	66	0	.	91	G	130705487	A	G	130705487	3	3	54	1	0	0	0	0	1	0	0	0	5382	159	6	2	19	2	FAM102A	9	130705487	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	6912745	130705487	10507944	95	7882											
ARMC3	219681	ucsc.edu;bcgsc.ca	37	10	23326201	23326201	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ARMC3	NM_173081	exon19	c.T2412C	p.A804A	GCAGGCTCTGGCT	.	51	5	108	0	.	90	C	23326201	T	C	23326201	2	2	54	1	0	0	0	0	0	0	0	1	952	1538	54	2		2	ARMC3	10	23326201	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10		23326201	112208546	96	7883											
RET	5979	ucsc.edu;bcgsc.ca	37	10	43613903	43613903	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RET	NM_020975	exon13	c.A2367G	p.K789K	CATCAAATTGTAT	.	52	5	86	0	.	4507	G	43613903	A	G	43613903	2	3	54	1	0	0	0	0	0	0	0	1	13235	98	4	2		2	RET	10	43613903	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	20287702	43613903	91920844	97	7884											
CSGALNACT2	55454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43650967	43650967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CSGALNACT2	NM_018590	exon2	c.C370T	p.L124F	GAGTTTCTTCATT	.	66	33	97	0	.	69	T	43650967	C	T	43650967	3	4	54	1	0	0	0	0	1	0	0	0	3939	913	32	3	372	3	CSGALNACT2	10	43650967	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	37064	43650967	91883780	98	7885											
HKDC1	80201	ucsc.edu;bcgsc.ca	37	10	71002998	71002998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HKDC1	NM_025130	exon7	c.A752G	p.D251G	AGGGCGACGAGGG	.	38	4	80	0	.	95	G	71002998	A	G	71002998	3	3	54	1	0	0	0	0	1	0	0	0	7193	275	10	2	778	2	HKDC1	10	71002998	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	27352031	71002998	64531749	99	7886											
VCL	7414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75830792	75830792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VCL	NM_003373	exon4	c.450delG	p.V150fs	AGAGGTGGTGGAG	.	106	61	201	0	.	93	-	75830792	G	-	75830792	7	5	54	1	0	1	0	1	0	0	0	0	17136	1335	47	0	464	0	VCL	10	75830792	Frame_Shift_Del	DEL	G	TCGA-DD-A11C-01A-11D-A12Z-10	4827794	75830792	59703955	100	7887											
PTEN	5728	ucsc.edu;bcgsc.ca	37	10	89711906	89711906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	PTEN,NS,carcinoma,+1	PTEN	NM_000314	exon6	c.T524C	p.V175A	GCTATGTGTATTA	.	46	4	71	0	.	17735	C	89711906	T	C	89711906	3	2	54	1	0	0	0	0	1	0	0	0	12738	1696	59	2	546	2	PTEN	10	89711906	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	13881114	89711906	45822841	101	7888											
SFXN3	81855	ucsc.edu;bcgsc.ca	37	10	102794566	102794566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SFXN3	NM_030971	exon3	c.T127C	p.S43P	CTGCTGTCCGGGG	.	55	5	90	0	.	91	C	102794566	T	C	102794566	3	2	54	1	0	0	0	0	1	0	0	0	14196	1667	58	2	133	2	SFXN3	10	102794566	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	13082660	102794566	32740181	102	7889											
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105162878	105162878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PDCD11	NM_014976	exon4	c.C238T	p.L80L	TAGTCCCTGTGTG	.	216	59	348	0	.	275	T	105162878	C	T	105162878	2	4	54	1	0	0	0	0	0	0	0	1	11617	680	24	3		3	PDCD11	10	105162878	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	2368312	105162878	30371869	103	7890											
SMNDC1	10285	ucsc.edu;bcgsc.ca	37	10	112063292	112063292	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SMNDC1	NM_005871	exon2	c.A54G	p.Q18Q	TTCAACTTGCTGG	.	35	4	70	0	.	91	C	112063292	T	C	112063292	2	2	54	1	0	0	0	0	0	0	0	1	14799	1606	56	2		2	SMNDC1	10	112063292	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	6900414	112063292	23471455	104	7891											
CASP7	840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115457351	115457351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CASP7	NM_001267057	exon2	c.G323A	p.R108H	TGTACCGTCCCTC	.	75	17	126	0	.	660	A	115457351	G	A	115457351	3	1	54	1	0	0	0	0	1	0	0	0	2676	1132	40	1	204	1	CASP7	10	115457351	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	3394059	115457351	20077396	105	7892											
SIGIRR	59307	ucsc.edu;bcgsc.ca	37	11	408175	408175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SIGIRR	NM_021805	exon4	c.T238C	p.S80P	CACTGGACACAAG	.	44	4	43	0	.	90	G	408175	A	G	408175	3	3	54	1	0	0	0	0	1	0	0	0	14304	275	10	2	1022	2	SIGIRR	11	408175	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10		408175	134598341	106	7893											
KRTAP5-1	387264	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1606219	1606219	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KRTAP5-1	NM_001005922	exon1	c.G261T	p.G87G	ACAGCCCCCCTTG	.	159	54	168	1	.	44	A	1606219	C	A	1606219	2	1	54	1	0	0	0	0	0	0	0	1	8558	610	22	3		3	KRTAP5-1	11	1606219	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	1198044	1606219	133400297	107	7894											
ZNF214	7761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7021165	7021165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF214	NM_013249	exon3	c.A1749C	p.K583N	ACGGCATTTGTAA	.	66	22	111	0	.	91	G	7021165	T	G	7021165	3	3	54	1	0	0	0	0	1	0	0	0	17767	1490	52	5	75	5	ZNF214	11	7021165	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	5414946	7021165	127985351	108	7895											
CALCA	796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14990439	14990439	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CALCA	NM_001741	exon4	c.T332A	p.I111N	ACCCCAATTGCAG	.	130	64	190	0	.	514	T	14990439	A	T	14990439	3	4	54	1	0	0	0	0	1	0	0	0	2575	101	4	4	261	4	CALCA	11	14990439	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	7969274	14990439	120016077	109	7896											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137651	40137651	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRC4C	NM_001258419	exon7	c.G192A	p.R64R	GTTTTTCCGAACA	.	92	39	97	0	.	521	T	40137651	C	T	40137651	2	4	54	1	0	0	0	0	0	0	0	1	9008	842	30	3		3	LRRC4C	11	40137651	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	25147212	40137651	94868865	110	7897											
ALKBH3	221120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	43923153	43923153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ALKBH3	NM_139178	exon8	c.A547T	p.N183Y	TATCGCAATGAGA	.	65	26	104	0	.	90	T	43923153	A	T	43923153	3	4	54	1	0	0	0	0	1	0	0	0	528	130	5	4	573	4	ALKBH3	11	43923153	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	3785502	43923153	91083363	111	7898											
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57569523	57569523	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CTNND1	NM_001085461	exon7	c.C1275T	p.H425H	AGTGCACCTTGGA	.	77	36	128	0	.	272	T	57569523	C	T	57569523	2	4	54	1	0	0	0	0	0	0	0	1	4019	506	18	3		3	CTNND1	11	57569523	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	13646370	57569523	77436993	112	7899											
VWCE	220001	ucsc.edu;bcgsc.ca	37	11	61036446	61036446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VWCE	NM_152718	exon15	c.C1830T	p.S610S	AGGGCAGGAGTCC	.	20	4	45	0	.	91	A	61036446	G	A	61036446	2	1	54	1	0	0	0	0	0	0	0	1	17242	987	35	3		3	VWCE	11	61036446	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	3466923	61036446	73970070	113	7900											
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65810617	65810617	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GAL3ST3	NM_033036	exon3	c.C657T	p.D219D	GGCGTCGTCGCGC	.	40	20	49	0	.	91	A	65810617	G	A	65810617	2	1	54	1	0	0	0	0	0	0	0	1	6199	1136	40	1		1	GAL3ST3	11	65810617	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	4774171	65810617	69195899	114	7901											
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88583097	88583097	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GRM5	NM_000842	exon3	c.G888A	p.A296A	TTCTCCCGCTAGA	.	146	78	193	0	.	949	T	88583097	C	T	88583097	2	4	54	1	0	0	0	0	0	0	0	1	6800	639	23	1		1	GRM5	11	88583097	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	22772480	88583097	46423419	115	7902											
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121383718	121383718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SORL1	NM_003105	exon7	c.T946C	p.L316L	CATCTCTTGGGCA	.	90	32	97	0	.	228	C	121383718	T	C	121383718	2	2	54	1	0	0	0	0	0	0	0	1	14934	1606	56	2		2	SORL1	11	121383718	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	32800621	121383718	13622798	116	7903											
TMEM225	338661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123753908	123753908	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	TMEM225,mouth,carcinoma,-1	TMEM225	NM_001013743	exon4	c.T615A	p.R205R	GTGTGCACGGACA	.	206	94	201	0	.	93	T	123753908	A	T	123753908	2	4	54	1	0	0	0	0	0	0	0	1	16144	146	6	4		4	TMEM225	11	123753908	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	2370190	123753908	11252608	117	7904											
CD27	939	ucsc.edu;bcgsc.ca	37	12	6559457	6559457	+	Silent	SNP	C	C	T	rs199876113		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CD27	NM_001242	exon3	c.C387T	p.T129T	GCTGACCGCTCGG	.	37	4	47	0	C|0.999;T|0.000	659	T	6559457	C	T	6559457	2	4	54	1	0	0	0	0	0	0	0	1	2990	639	23	1		1	CD27	12	6559457	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10		6559457	127292438	118	7905											
ITPR2	3709	ucsc.edu;bcgsc.ca	37	12	26647251	26647251	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ITPR2	NM_002223	exon39	c.A5205G	p.S1735S	CTTATCTGAATCT	.	41	4	56	0	.	542	C	26647251	T	C	26647251	2	2	54	1	0	0	0	0	0	0	0	1	7921	1567	55	2		2	ITPR2	12	26647251	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	20087794	26647251	107204644	119	7906											
C12orf40	283461	ucsc.edu;bcgsc.ca	37	12	40040182	40040182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C12orf40	NM_001031748	exon4	c.C254T	p.P85L	AAATGCCCCTAAG	.	42	4	93	0	.	96	T	40040182	C	T	40040182	3	4	54	1	0	0	0	0	1	0	0	0	1686	623	22	3	268	3	C12orf40	12	40040182	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	13392931	40040182	93811713	120	7907											
LRRK2	120892	ucsc.edu;bcgsc.ca	37	12	40619068	40619068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRK2	NM_198578	exon1	c.C135A	p.F45L	GGTGTTCACGTAC	.	25	4	59	0	.	533	A	40619068	C	A	40619068	3	1	54	1	0	0	0	0	1	0	0	0	9033	825	29	3	137	3	LRRK2	12	40619068	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	578886	40619068	93232827	121	7908											
TENC1	23371	ucsc.edu;bcgsc.ca	37	12	53453408	53453408	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TENC1	NM_015319	exon18	c.A2013G	p.P671P	GAAACCAGCCACT	.	36	4	58	0	.	92	G	53453408	A	G	53453408	2	3	54	1	0	0	0	0	0	0	0	1	15755	175	7	2		2	TENC1	12	53453408	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	12834340	53453408	80398487	122	7909											
TENC1	23371	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	53457144	53457144	+	Missense_Mutation	SNP	G	G	A	rs201129709		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TENC1	NM_015319	exon27	c.G4034A	p.R1345H	TCTTTCGCCGCCA	.	128	56	114	0	G|0.999;A|0.000	92	A	53457144	G	A	53457144	3	1	54	1	0	0	0	0	1	0	0	0	15755	1087	38	1	4219	1	TENC1	12	53457144	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	3736	53457144	80394751	123	7910											
PPP1R1A	5502	ucsc.edu;bcgsc.ca	37	12	54975806	54975806	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP1R1A	NM_006741	exon5	c.A357G	p.P119P	TGTGTCTGGGATC	.	50	5	64	0	.	226	C	54975806	T	C	54975806	2	2	54	1	0	0	0	0	0	0	0	1	12367	1567	55	2		2	PPP1R1A	12	54975806	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	1518662	54975806	78876089	124	7911											
ANKRD52	283373	ucsc.edu;bcgsc.ca	37	12	56648360	56648360	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD52	NM_173595	exon8	c.693+2T>C	.	GCCCTGACCTCCG	.	45	5	61	0	.	70	G	56648360	A	G	56648360	5	3	54	1	0	0	0	0	0	0	1	0	678	289	10	2	2623	2	ANKRD52	12	56648360	Splice_Site	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	1672554	56648360	77203535	125	7912											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57556190	57556190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRP1	NM_002332	exon14	c.G2293T	p.V765F	GGCAGTGTCTACC	.	72	30	105	0	.	596	T	57556190	G	T	57556190	3	4	54	1	0	0	0	0	1	0	0	0	8951	1377	48	3	2347	3	LRP1	12	57556190	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	907830	57556190	76295705	126	7913											
PPP1R12A	4659	broad.mit.edu;bcgsc.ca	37	12	80175618	80175618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP1R12A	NM_002480	exon23	c.T2932C	p.S978P	ACAGTGATCTATC	.	112	5	152	0	.	273	G	80175618	A	G	80175618	3	3	54	1	0	0	0	0	1	0	0	0	12354	333	12	2	172	2	PPP1R12A	12	80175618	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	22619428	80175618	53676277	127	7914											
TCHP	84260	ucsc.edu;bcgsc.ca	37	12	110341849	110341849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TCHP	NM_001143852	exon3	c.C296T	p.A99V	TGCTGGCCAGAGA	.	28	4	59	0	.	91	T	110341849	C	T	110341849	3	4	54	1	0	0	0	0	1	0	0	0	15699	739	26	3	302	3	TCHP	12	110341849	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	30166231	110341849	23510046	128	7915											
HNF1A	6927	ucsc.edu;bcgsc.ca	37	12	121434085	121434085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HNF1A	NM_000545	exon5	c.G976T	p.A326S	CAGCCTGCGACCA	.	28	4	55	0	.	1745	T	121434085	G	T	121434085	3	4	54	1	0	0	0	0	1	0	0	0	7251	1319	46	3	994	3	HNF1A	12	121434085	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	11092236	121434085	12417810	129	7916											
ATP6V0A2	23545	ucsc.edu;bcgsc.ca	37	12	124220107	124220107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ATP6V0A2	NM_012463	exon8	c.A761G	p.N254S	ATCCAAACACAGC	.	57	5	61	0	.	92	G	124220107	A	G	124220107	3	3	54	1	0	0	0	0	1	0	0	0	1169	43	2	2	791	2	ATP6V0A2	12	124220107	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	2786022	124220107	9631788	130	7917											
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049572	36049572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MAB21L1	NM_005584	exon1	c.C704T	p.A235V	GCCTCCGCGAACT	.	21	18	52	0	.	92	A	36049572	G	A	36049572	3	1	54	1	0	0	0	0	1	0	0	0	9141	1087	38	1	379	1	MAB21L1	13	36049572	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10		36049572	79120306	131	7918											
SETDB2	83852	ucsc.edu;bcgsc.ca	37	13	50054356	50054356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SETDB2	NM_031915	exon8	c.A907G	p.T303A	TTTAGAACAAAAT	.	43	4	118	0	.	91	G	50054356	A	G	50054356	3	3	54	1	0	0	0	0	1	0	0	0	14139	57	2	2	933	2	SETDB2	13	50054356	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	14004784	50054356	65115522	132	7919											
CLN5	1203	ucsc.edu;bcgsc.ca	37	13	77569324	77569324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CLN5	NM_006493	exon2	c.A447G	p.P149P	AGCCCCAGTATGG	.	56	6	107	1	.	91	G	77569324	A	G	77569324	2	3	54	1	0	0	0	0	0	0	0	1	3544	175	7	2		2	CLN5	13	77569324	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	27514968	77569324	37600554	133	7920											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24884257	24884257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NYNRIN	NM_025081	exon9	c.T3302C	p.M1101T	GCTTCATGGACTC	.	76	27	89	0	.	3	C	24884257	T	C	24884257	3	2	54	1	0	0	0	0	1	0	0	0	10796	1464	51	2	3332	2	NYNRIN	14	24884257	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10		24884257	82465283	134	7921											
ERO1L	30001	ucsc.edu;bcgsc.ca	37	14	53149118	53149118	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ERO1L	NM_014584	exon3	c.G243T	p.L81L	CCTCTTCAGGTTT	.	48	4	119	0	.	90	A	53149118	C	A	53149118	2	1	54	1	0	0	0	0	0	0	0	1	5239	813	29	3		3	ERO1L	14	53149118	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	28264861	53149118	54200422	135	7922											
SPTB	6710	ucsc.edu;bcgsc.ca	37	14	65239594	65239594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SPTB	NM_001024858	exon25	c.T5257C	p.F1753L	CGATGAAGGCATT	.	41	4	67	0	.	100	G	65239594	A	G	65239594	3	3	54	1	0	0	0	0	1	0	0	0	15117	72	3	2	1842	2	SPTB	14	65239594	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	12090476	65239594	42109946	136	7923											
DPF3	8110	ucsc.edu;bcgsc.ca	37	14	73181159	73181159	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DPF3	NM_012074	exon6	c.A576G	p.E192E	GTGGTCTTCCTGA	.	34	4	54	0	.	1	C	73181159	T	C	73181159	2	2	54	1	0	0	0	0	0	0	0	1	4718	1606	56	2		2	DPF3	14	73181159	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	7941565	73181159	34168381	137	7924											
KIAA0317	9870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75140804	75140804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA0317	NM_001039479	exon9	c.T1091A	p.V364E	TCCTTCACTGAGA	.	50	14	105	0	.	525	T	75140804	A	T	75140804	3	4	54	1	0	0	0	0	1	0	0	0	8167	159	6	4	1428	4	KIAA0317	14	75140804	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	1959645	75140804	32208736	138	7925											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96795907	96795907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ATG2B	NM_018036	exon12	c.A1795C	p.S599R	CAGTACTAAAATA	.	85	50	166	0	.	93	G	96795907	T	G	96795907	3	3	54	1	0	0	0	0	1	0	0	0	1094	1522	53	5	4565	5	ATG2B	14	96795907	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	21655103	96795907	10553633	139	7926											
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35085586	35085586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACTC1	NM_005159	exon3	c.C314T	p.T105I	AGCAGGGTGGGGT	.	88	62	155	0	.	92	A	35085586	G	A	35085586	3	1	54	1	0	0	0	0	1	0	0	0	195	1261	44	3	839	3	ACTC1	15	35085586	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10		35085586	67445806	140	7927											
PPIP5K1	9677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43827486	43827486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPIP5K1	NM_001130858	exon31	c.G3688C	p.E1230Q	CTTGCTCCCCTTC	.	215	84	262	0	.	90	G	43827486	C	G	43827486	3	3	54	1	0	0	0	0	1	0	0	0	12332	864	30	4	617	4	PPIP5K1	15	43827486	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	8741900	43827486	58703906	141	7928											
MYO5A	4644	broad.mit.edu;bcgsc.ca	37	15	52656807	52656807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MYO5A	NM_000259	exon24	c.T3253C	p.F1085L	GACTGAACTCATT	.	130	6	199	0	.	93	G	52656807	A	G	52656807	3	3	54	1	0	0	0	0	1	0	0	0	10078	43	2	2	2386	2	MYO5A	15	52656807	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	8829321	52656807	49874585	142	7929											
POLG	5428	ucsc.edu;bcgsc.ca	37	15	89873328	89873328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	POLG	NM_002693	exon3	c.A839G	p.E280G	TACTGCTCCCTGA	.	48	4	63	1	.	228	C	89873328	T	C	89873328	3	2	54	1	0	0	0	0	1	0	0	0	12200	1551	54	2	2964	2	POLG	15	89873328	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	37216521	89873328	12658064	143	7930											
RHBDF1	64285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	111695	111695	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RHBDF1	NM_022450	exon10	c.1209-1G>A	.	AAGGGCCTGCGGG	.	45	21	45	0	.	92	T	111695	C	T	111695	5	4	54	1	0	0	0	0	0	0	1	0	13319	695	24	3	1399	3	RHBDF1	16	111695	Splice_Site	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10		111695	90243058	144	7931											
PKD1	5310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2149979	2149979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PKD1	NM_000296	exon29	c.G9806T	p.R3269L	GGCGGCCGGTCCC	.	167	70	198	2	.	91	A	2149979	C	A	2149979	3	1	54	1	0	0	0	0	1	0	0	0	11963	652	23	1	3177	1	PKD1	16	2149979	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	2038284	2149979	88204774	145	7932											
C16orf54	283897	ucsc.edu;bcgsc.ca	37	16	29755768	29755768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_175900	exon2	c.T505C	p.W169R	CAGCCCAGCTCAC	.	42	4	35	0	.	.	G	29755768	A	G	29755768	3	3	54	1	0	0	0	0	1	0	0	0	1819	188	7	2	173	2	C16orf54	16	29755768	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	27605789	29755768	60598985	146	7933											
KIF22	3835	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	29816332	29816332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF22	NM_007317	exon12	c.C1875A	p.H625Q	GCTCCACGGCCCC	.	16	6	15	0	.	68	A	29816332	C	A	29816332	3	1	54	1	0	0	0	0	1	0	0	0	8290	535	19	1	1921	1	KIF22	16	29816332	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	60564	29816332	60538421	147	7934											
ASPHD1	253982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29912566	29912566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ASPHD1	NM_181718	exon1	c.C274T	p.L92F	CTGTTCCTCTGGT	.	110	22	92	0	.	68	T	29912566	C	T	29912566	3	4	54	1	0	0	0	0	1	0	0	0	1054	681	24	3	276	3	ASPHD1	16	29912566	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	96234	29912566	60442187	148	7935											
NUDT21	11051	ucsc.edu;bcgsc.ca	37	16	56481870	56481870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NUDT21	NM_007006	exon2	c.A148G	p.K50E	GCTCTTTTGTACC	.	43	4	107	0	.	90	C	56481870	T	C	56481870	3	2	54	1	0	0	0	0	1	0	0	0	10738	1850	64	2	559	2	NUDT21	16	56481870	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	26569304	56481870	33872883	149	7936											
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57596061	57596061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GPR114	NM_153837	exon2	c.C56T	p.A19V	AGAATGCAACAAC	.	47	23	68	0	.	90	T	57596061	C	T	57596061	3	4	54	1	0	0	0	0	1	0	0	0	6631	710	25	3	58	3	GPR114	16	57596061	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	1114191	57596061	32758692	150	7937											
C1QBP	708	ucsc.edu;bcgsc.ca	37	17	5336663	5336663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C1QBP	NM_001212	exon5	c.T649C	p.S217P	ATTCAGACTCGCC	.	37	4	83	0	.	91	G	5336663	A	G	5336663	3	3	54	1	0	0	0	0	1	0	0	0	1956	275	10	2	207	2	C1QBP	17	5336663	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10		5336663	75858547	151	7938											
RAB34	83871	ucsc.edu;bcgsc.ca	37	17	27042076	27042076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RAB34	NM_001144943	exon9	c.A749G	p.E250G	CAGTACTCAGCCT	.	39	4	63	0	.	227	C	27042076	T	C	27042076	3	2	54	1	0	0	0	0	1	0	0	0	12924	1551	54	2	277	2	RAB34	17	27042076	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	21705413	27042076	54153134	152	7939											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40024989	40024989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACLY	NM_001096	exon28	c.G3184A	p.V1062M	CCAGCACAAAGAT	.	48	19	76	0	.	228	T	40024989	C	T	40024989	3	4	54	1	0	0	0	0	1	0	0	0	143	478	17	3	129	3	ACLY	17	40024989	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	12982913	40024989	41170221	153	7940											
KAT2A	2648	ucsc.edu;bcgsc.ca	37	17	40270418	40270418	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KAT2A	NM_021078	exon7	c.C1077T	p.F359F	GGACAGGAATCTG	.	49	4	48	0	.	523	A	40270418	G	A	40270418	2	1	54	1	0	0	0	0	0	0	0	1	7981	1165	41	3		3	KAT2A	17	40270418	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	245429	40270418	40924792	154	7941											
GNGT2	2793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47284179	47284179	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GNGT2	NM_031498	exon4	c.C150T	p.L50L	GCCTTTGAGAAAA	.	160	64	247	0	.	227	A	47284179	G	A	47284179	2	1	54	1	0	0	0	0	0	0	0	1	6534	1277	45	3		3	GNGT2	17	47284179	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	7013761	47284179	33911031	155	7942											
CUEDC1	404093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	55945598	55945598	+	Missense_Mutation	SNP	C	C	G	rs34800498	byfrequency;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CUEDC1	NM_001271875	exon8	c.G947C	p.R316P	TTCCTCCGGGTGG	.	76	43	102	0	C|0.958;T|0.042	228	G	55945598	C	G	55945598	3	3	54	1	0	0	0	0	1	0	0	0	4052	652	23	4	225	4	CUEDC1	17	55945598	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	8661419	55945598	25249612	156	7943											
OR4D2	124538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56247344	56247344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR4D2	NM_001004707	exon1	c.G328T	p.A110S	GGAGGTGCCATGG	.	56	15	103	0	.	114	T	56247344	G	T	56247344	3	4	54	1	0	0	0	0	1	0	0	0	11056	1319	46	3	330	3	OR4D2	17	56247344	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	301746	56247344	24947866	157	7944											
DUS1L	64118	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80017940	80017940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DUS1L	NM_022156	exon11	c.G1052T	p.G351V	CGCGCACCTGCCT	.	138	25	122	1	.	91	A	80017940	C	A	80017940	3	1	54	1	0	0	0	0	1	0	0	0	4805	507	18	3	385	3	DUS1L	17	80017940	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	23770596	80017940	1177270	158	7945											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9255525	9255525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD12	NM_015208	exon9	c.A2260T	p.I754F	GACAAGATTAAAA	.	24	11	64	0	.	92	T	9255525	A	T	9255525	3	4	54	1	0	0	0	0	1	0	0	0	640	333	12	4	2290	4	ANKRD12	18	9255525	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10		9255525	68821723	159	7946											
ZBTB7C	201501	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	45555810	45555810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZBTB7C	NM_001039360	exon3	c.C1681T	p.R561C	GCGCGCGCCCGAA	.	26	10	33	0	.	91	A	45555810	G	A	45555810	3	1	54	1	0	0	0	0	1	0	0	0	17552	1087	38	1	182	1	ZBTB7C	18	45555810	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	36300285	45555810	32521438	160	7947											
WDR18	57418	ucsc.edu;bcgsc.ca	37	19	994280	994280	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR18	NM_024100	exon10	c.G1236A	p.L412L	CAACCTGCGCAAG	.	45	4	63	0	.	91	A	994280	G	A	994280	2	1	54	1	0	0	0	0	0	0	0	1	17275	1306	46	3		3	WDR18	19	994280	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10		994280	58134703	161	7948											
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6919616	6919616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	EMR1	NM_001256253	exon13	c.G1478A	p.R493H	ATGAGCGCTTCTT	.	133	60	188	0	.	526	A	6919616	G	A	6919616	3	1	54	1	0	0	0	0	1	0	0	0	5104	1087	38	1	1528	1	EMR1	19	6919616	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	5925336	6919616	52209367	162	7949											
INSR	3643	ucsc.edu;bcgsc.ca	37	19	7126664	7126664	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	INSR	NM_001079817	exon16	c.2910-2A>G	.	GCTGCCTGGAGGA	.	32	4	29	0	.	1381	C	7126664	T	C	7126664	5	2	54	1	0	0	0	0	0	0	1	0	7773	1594	55	2	1232	2	INSR	19	7126664	Splice_Site	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	207048	7126664	52002319	163	7950											
ICAM5	7087	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10404831	10404831	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ICAM5	NM_003259	exon8	c.G1827A	p.V609V	GTGCGTGGGCTCC	.	44	22	56	0	.	153	A	10404831	G	A	10404831	2	1	54	1	0	0	0	0	0	0	0	1	7483	1335	47	3		3	ICAM5	19	10404831	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	3278167	10404831	48724152	164	7951											
SLC44A2	57153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10753056	10753056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC44A2	NM_020428	exon21	c.G1943A	p.G648D	TCGTTGGCTCCTA	.	205	82	310	0	.	91	A	10753056	G	A	10753056	3	1	54	1	0	0	0	0	1	0	0	0	14636	1203	42	3	2060	3	SLC44A2	19	10753056	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	348225	10753056	48375927	165	7952											
TNPO2	30000	ucsc.edu;bcgsc.ca	37	19	12817572	12817572	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TNPO2	NM_013433	exon13	c.G1308T	p.L436L	CGGGATCAGCTCA	.	42	4	70	0	.	227	A	12817572	C	A	12817572	2	1	54	1	0	0	0	0	0	0	0	1	16333	813	29	3		3	TNPO2	19	12817572	Silent	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	2064516	12817572	46311411	166	7953											
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17212654	17212654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MYO9B	NM_001130065	exon2	c.A127G	p.T43A	GACAGCACCACCT	.	48	4	59	1	.	67	G	17212654	A	G	17212654	3	3	54	1	0	0	0	0	1	0	0	0	10085	159	6	2	129	2	MYO9B	19	17212654	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	4395082	17212654	41916329	167	7954											
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18188364	18188364	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	IL12RB1	NM_153701	exon5	c.C511T	p.Q171X	GGAACTGCACCTC	.	58	22	71	0	.	91	A	18188364	G	A	18188364	4	1	54	1	0	0	0	0	0	1	0	0	7626	1328	46	3	1658	3	IL12RB1	19	18188364	Nonsense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	975710	18188364	40940619	168	7955											
ZNF682	91120	bcgsc.ca;mdanderson.org	37	19	20117276	20117276	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF682	NM_033196	exon4	c.A1035G	p.E345E	GCCACATTCTTCA	.	38	5	68	0	.	92	C	20117276	T	C	20117276	2	2	54	1	0	0	0	0	0	0	0	1	18086	1490	52	2		2	ZNF682	19	20117276	Silent	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	1928912	20117276	39011707	169	7956											
ZNF493	284443	ucsc.edu;bcgsc.ca	37	19	21607674	21607674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF493	NM_001076678	exon4	c.A2213G	p.D738G	CTGGAGACAAACC	.	47	4	64	0	.	516	G	21607674	A	G	21607674	3	3	54	1	0	0	0	0	1	0	0	0	17941	275	10	2	2290	2	ZNF493	19	21607674	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	1490398	21607674	37521309	170	7957											
ZNF99	7652	ucsc.edu;bcgsc.ca	37	19	22941840	22941840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF99	NM_001080409	exon4	c.G871A	p.G291S	CTTTGCCACATTC	.	42	4	73	0	.	24	T	22941840	C	T	22941840	3	4	54	1	0	0	0	0	1	0	0	0	18201	594	21	3	2526	3	ZNF99	19	22941840	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	1334166	22941840	36187143	171	7958											
WTIP	126374	ucsc.edu;bcgsc.ca	37	19	34986661	34986661	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WTIP	NM_001080436	exon7	c.A1137G	p.A379A	CGTGGCATGTTAC	.	39	4	75	0	.	68	G	34986661	A	G	34986661	2	3	54	1	0	0	0	0	0	0	0	1	17407	204	8	2		2	WTIP	19	34986661	Silent	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	12044821	34986661	24142322	172	7959											
HAUS5	23354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36106172	36106172	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HAUS5	NM_015302	exon6	c.G369A	p.Q123Q	CACCCAGCGTCGA	.	42	22	61	0	.	68	A	36106172	G	A	36106172	2	1	54	1	0	0	0	0	0	0	0	1	6969	962	34	3		3	HAUS5	19	36106172	Silent	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	1119511	36106172	23022811	173	7960											
ZNF420	147923	ucsc.edu;bcgsc.ca	37	19	37619509	37619509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF420	NM_144689	exon5	c.C1616T	p.A539V	GAAAGGCCTTTGC	.	45	4	89	0	.	90	T	37619509	C	T	37619509	3	4	54	1	0	0	0	0	1	0	0	0	17894	739	26	3	1626	3	ZNF420	19	37619509	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	1513337	37619509	21509474	174	7961											
EXOC3L2	90332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45730995	45730995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	EXOC3L2	NM_138568	exon5	c.C329A	p.P110Q	ACTGCTGGGTTCT	.	82	24	85	2	.	91	T	45730995	G	T	45730995	3	4	54	1	0	0	0	0	1	0	0	0	5305	1348	47	3	924	3	EXOC3L2	19	45730995	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10	8111486	45730995	13397988	175	7962											
SLC8A2	6543	ucsc.edu;bcgsc.ca	37	19	47935595	47935595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC8A2	NM_015063	exon9	c.G2218A	p.V740M	GGGGCACACAGGC	.	32	4	40	0	.	94	T	47935595	C	T	47935595	3	4	54	1	0	0	0	0	1	0	0	0	14707	478	17	3	555	3	SLC8A2	19	47935595	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	2204600	47935595	11193388	176	7963											
PPP2R1A	5518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52716334	52716334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	PPP2R1A,NS,carcinoma,0	PPP2R1A	NM_014225	exon6	c.C778G	p.R260G	CGCGTCCGCTACA	.	27	13	25	0	.	1666	G	52716334	C	G	52716334	3	3	54	1	0	0	0	0	1	0	0	0	12382	652	23	4	800	4	PPP2R1A	19	52716334	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	4780739	52716334	6412649	177	7964											
TASP1	55617	ucsc.edu;bcgsc.ca	37	20	13610722	13610722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TASP1	NM_017714	exon2	c.A4G	p.T2A	CCATGGTCATTCT	.	32	6	68	0	.	90	C	13610722	T	C	13610722	3	2	54	1	0	0	0	0	1	0	0	0	15586	1667	58	2	1310	2	TASP1	20	13610722	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10		13610722	49414798	178	7965											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40714481	40714481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PTPRT	NM_133170	exon29	c.T3916C	p.Y1306H	GCCAGTACTGCAT	.	102	30	82	0	.	664	G	40714481	A	G	40714481	3	3	54	1	0	0	0	0	1	0	0	0	12812	391	14	2	482	2	PTPRT	20	40714481	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	27103759	40714481	22311039	179	7966											
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43108685	43108685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTPAL	NM_001039199	exon2	c.T46G	p.S16A	GTGGCCTCACTCT	.	60	35	59	0	.	153	G	43108685	T	G	43108685	3	3	54	1	0	0	0	0	1	0	0	0	16734	1551	54	5	48	5	TTPAL	20	43108685	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	2394204	43108685	19916835	180	7967											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38572587	38572587	+	Missense_Mutation	SNP	G	G	A	rs200071342		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTC3	NM_001001894	exon45	c.G5905A	p.V1969M	AAAAACGTGCGTG	.	138	57	210	0	G|0.999;A|0.001	590	A	38572587	G	A	38572587	3	1	54	1	0	0	0	0	1	0	0	0	16694	1145	40	1	6079	1	TTC3	21	38572587	Missense_Mutation	SNP	G	TCGA-DD-A11C-01A-11D-A12Z-10		38572587	9557308	181	7968											
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45089836	45089836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RRP1B	NM_015056	exon2	c.C202A	p.P68T	GATGAACCCCTTC	.	192	103	310	0	.	91	A	45089836	C	A	45089836	3	1	54	1	0	0	0	0	1	0	0	0	13688	507	18	3	208	3	RRP1B	21	45089836	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10	6517249	45089836	3040059	182	7969											
DDX17	10521	ucsc.edu;bcgsc.ca	37	22	38897272	38897272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DDX17	NM_006386	exon2	c.G301A	p.G101S	CACCACCTCTTGC	.	29	4	43	0	.	229	T	38897272	C	T	38897272	3	4	54	1	0	0	0	0	1	0	0	0	4344	681	24	3	1942	3	DDX17	22	38897272	Missense_Mutation	SNP	C	TCGA-DD-A11C-01A-11D-A12Z-10		38897272	12407294	183	7970											
SMCR7L	54471	ucsc.edu;bcgsc.ca	37	22	39910017	39910017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SMCR7L	NM_019008	exon6	c.T1081C	p.S361P	TGCCGATCTCTGT	.	21	4	39	0	.	90	C	39910017	T	C	39910017	3	2	54	1	0	0	0	0	1	0	0	0	14791	1435	50	2	1095	2	SMCR7L	22	39910017	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	1012745	39910017	11394549	184	7971											
MKL1	57591	ucsc.edu;bcgsc.ca	37	22	40807623	40807623	+	Missense_Mutation	SNP	T	T	C	rs28661556	alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MKL1	NM_020831	exon15	c.A2567G	p.H856R	GGGGGGTGGTCCA	.	41	4	43	0	.	948	C	40807623	T	C	40807623	3	2	54	1	0	0	0	0	1	0	0	0	9601	1696	59	2	232	2	MKL1	22	40807623	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10	897606	40807623	10496943	185	7972											
NHS	4810	ucsc.edu;bcgsc.ca	37	X	17744747	17744747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NHS	NM_198270	exon6	c.T2458C	p.S820P	AGCATCTCTTTCA	.	43	4	41	0	.	197	C	17744747	T	C	17744747	3	2	54	1	0	0	0	0	1	0	0	0	10411	1551	54	2	2585	2	NHS	23	17744747	Missense_Mutation	SNP	T	TCGA-DD-A11C-01A-11D-A12Z-10		17744747	137525813	186	7973											
CDKL5	6792	ucsc.edu;bcgsc.ca	37	X	18664147	18664147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CDKL5	NM_003159	exon19	c.A2734G	p.R912G	GGCAGAAGACAGA	.	34	4	63	0	.	838	G	18664147	A	G	18664147	3	3	54	1	0	0	0	0	1	0	0	0	3157	64	3	2	2804	2	CDKL5	23	18664147	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	919400	18664147	136606413	187	7974											
SLC35A2	7355	ucsc.edu;bcgsc.ca	37	X	48763797	48763797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC35A2	NM_001042498	exon3	c.T298C	p.F100L	GGAGGAAGAGAAC	.	46	4	52	0	.	193	G	48763797	A	G	48763797	3	3	54	1	0	0	0	0	1	0	0	0	14571	72	3	2	1060	2	SLC35A2	23	48763797	Missense_Mutation	SNP	A	TCGA-DD-A11C-01A-11D-A12Z-10	30099650	48763797	106506763	188	7975											
GNB1	2782	ucsc.edu;bcgsc.ca	37	1	1721849	1721849	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GNB1	NM_002074	exon9	c.C684T	p.D228D	ATTGATGTCAGAC	.	66	6	104	0	.	227	A	1721849	G	A	1721849	2	1	55	1	0	0	0	0	0	0	0	1	6515	1368	48	3		3	GNB1	1	1721849	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10		1721849	247528772	1	7976											
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074176	8074182	+	Frame_Shift_Del	DEL	GGCTTCA	GGCTTCA	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	GGCTTCA	GGCTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ERRFI1	NM_018948	exon4	c.477_483del	p.159_161del	AGAGAGGGCTTCA	.	41	18	138	0	.	91	-	8074182	GGCTTCA	-	8074176	7	5	55	1	0	1	0	1	0	0	0	0	5244	1219	43	0	909	0	ERRFI1	1	8074176	Frame_Shift_Del	DEL	GGCTTCA	TCGA-DD-A11D-01A-11D-A12Z-10	6352327	8074176	241176445	2	7977											
CASZ1	54897	ucsc.edu;bcgsc.ca	37	1	10699837	10699837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CASZ1	NM_001079843	exon21	c.A4442G	p.H1481R	CGGTCGTGGTGCT	.	43	4	100	1	.	113	C	10699837	T	C	10699837	3	2	55	1	0	0	0	0	1	0	0	0	2685	1696	59	2	841	2	CASZ1	1	10699837	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	2625661	10699837	238550784	3	7978											
ACTL8	81569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	18152300	18152300	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ACTL8	NM_030812	exon3	c.G387C	p.L129L	CCTCCTGGCCGAC	.	123	52	120	0	.	72	C	18152300	G	C	18152300	2	2	55	1	0	0	0	0	0	0	0	1	202	1335	47	4		4	ACTL8	1	18152300	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	7452463	18152300	231098321	4	7979											
PRDX1	5052	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45977037	45977037	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PRDX1	NM_181696	exon6	c.C564T	p.V188V	CTTTTGGACATCA	.	105	43	126	1	.	514	A	45977037	G	A	45977037	2	1	55	1	0	0	0	0	0	0	0	1	12464	1161	41	3		3	PRDX1	1	45977037	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	27824737	45977037	203273584	5	7980											
CMPK1	51727	broad.mit.edu;bcgsc.ca	37	1	47834285	47834285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CMPK1	NM_016308	exon2	c.A316G	p.R106G	TTAAAGAGGGTAA	.	110	7	128	0	.	116	G	47834285	A	G	47834285	3	3	55	1	0	0	0	0	1	0	0	0	3580	295	11	2	322	2	CMPK1	1	47834285	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	1857248	47834285	201416336	6	7981											
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90399468	90399468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	LRRC8D	NM_018103	exon3	c.G841A	p.G281R	AAGGATGGAGAGC	.	52	17	75	0	.	92	A	90399468	G	A	90399468	3	1	55	1	0	0	0	0	1	0	0	0	9024	1349	47	3	843	3	LRRC8D	1	90399468	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	42565183	90399468	158851153	7	7982											
AMPD2	271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110171048	110171048	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	AMPD2	NM_004037	exon11	c.C1500T	p.S500S	GGAGTCCGTCCTC	.	40	4	51	0	.	292	T	110171048	C	T	110171048	2	4	55	1	0	0	0	0	0	0	0	1	586	639	23	1		1	AMPD2	1	110171048	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	19771580	110171048	139079573	8	7983											
CHIA	27159	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111861754	111861754	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CHIA	NM_201653	exon10	c.C928T	p.L310L	ACCTTCCTGAAAA	.	219	69	273	2	.	91	T	111861754	C	T	111861754	2	4	55	1	0	0	0	0	0	0	0	1	3342	680	24	3		3	CHIA	1	111861754	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1690706	111861754	137388867	9	7984											
RFX5	5993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	151314816	151314816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RFX5	NM_000449	exon11	c.G1697T	p.S566I	ATGACACTCACTT	.	489	33	465	0	.	91	A	151314816	C	A	151314816	3	1	55	1	0	0	0	0	1	0	0	0	13266	565	20	3	157	3	RFX5	1	151314816	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	39453062	151314816	97935805	10	7985											
DARC	2532	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175494	159175494	+	Missense_Mutation	SNP	C	C	A	rs34599082	byfrequency;alternate_allele	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DARC	NM_001122951	exon1	c.C271A	p.R91S	CTCTTCCGCTGGC	.	285	91	239	1	C|0.991;T|0.009	659	A	159175494	C	A	159175494	3	1	55	1	0	0	0	0	1	0	0	0	4240	652	23	1	298	1	DARC	1	159175494	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	7860678	159175494	90075127	11	7986											
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167663459	167663459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RCSD1	NM_052862	exon5	c.T394A	p.S132T	GTGCGATCTAGGC	.	161	47	102	0	.	517	A	167663459	T	A	167663459	3	1	55	1	0	0	0	0	1	0	0	0	13185	1435	50	4	412	4	RCSD1	1	167663459	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	8487965	167663459	81587162	12	7987											
MYOC	4653	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171621608	171621608	+	Missense_Mutation	SNP	C	C	A	rs74315339	bycluster	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MYOC	NM_000261	exon1	c.G144T	p.Q48H	GGTATACTGGCAT	.	239	81	246	1	.	226	A	171621608	C	A	171621608	3	1	55	1	0	0	0	0	1	0	0	0	10086	564	20	3	1382	3	MYOC	1	171621608	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	3958149	171621608	77629013	13	7988											
ATP2B4	493	broad.mit.edu;bcgsc.ca	37	1	203667458	203667481	+	In_Frame_Del	DEL	CGCCCTGCTGGTGAAGAAAATGAA	CGCCCTGCTGGTGAAGAAAATGAA	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	CGCCCTGCTGGTGAAGAAAATGAA	CGCCCTGCTGGTGAAGAAAATGAA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ATP2B4	NM_001001396	exon3	c.367_390del	p.123_130del	TTTTATCGCCCTG	.	254	12	278	0	.	517	-	203667481	CGCCCTGCTGGTGAAGAAAATGAA	-	203667458	7	5	55	1	0	1	0	1	0	0	0	0	1142	884	31	0	373	0	ATP2B4	1	203667458	In_Frame_Del	DEL	CGCCCTGCTGGTGAAGAAAATGAA	TCGA-DD-A11D-01A-11D-A12Z-10	32045850	203667458	45583163	14	7989											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247588697	247588697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	NLRP3	NM_183395	exon3	c.C1952A	p.P651H	ATTTCCCCAAGAT	.	261	85	243	0	.	674	A	247588697	C	A	247588697	3	1	55	1	0	0	0	0	1	0	0	0	10478	623	22	3	1962	3	NLRP3	1	247588697	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	43921239	247588697	1661924	15	7990											
OR2L8	391190	ucsc.edu;bcgsc.ca	37	1	248112750	248112750	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR2L8	NM_001001963	exon1	c.A591T	p.T197T	GGGCACAGTGTTT	.	324	60	315	0	.	70	T	248112750	A	T	248112750	2	4	55	1	0	0	0	0	0	0	0	1	11009	175	7	4		4	OR2L8	1	248112750	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	524053	248112750	1137871	16	7991											
OR2L3	391192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248224574	248224574	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR2L3	NM_001004687	exon1	c.A591T	p.T197T	GGGCACAGTGTTT	.	1251	67	1021	0	.	68	T	248224574	A	T	248224574	2	4	55	1	0	0	0	0	0	0	0	1	11008	175	7	4		4	OR2L3	1	248224574	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	111824	248224574	1026047	17	7992											
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32475575	32475575	+	Missense_Mutation	SNP	C	C	T	rs200929188		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	NLRC4,NS,carcinoma,-1	NLRC4	NM_001199138	exon4	c.G1358A	p.R453Q	AGTCTTCGTCCTG	.	158	60	188	0	C|0.999;T|0.000	276	T	32475575	C	T	32475575	3	4	55	1	0	0	0	0	1	0	0	0	10469	884	31	1	1740	1	NLRC4	2	32475575	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10		32475575	210723798	18	7993											
ABCG8	64241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44073332	44073332	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ABCG8	NM_022437	exon3	c.G204T	p.L68L	GCAGCTGGCTCAG	.	115	44	157	1	.	94	T	44073332	G	T	44073332	2	4	55	1	0	0	0	0	0	0	0	1	72	1335	47	3		3	ABCG8	2	44073332	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	11597757	44073332	199126041	19	7994											
HTRA2	27429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74757336	74757336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTRA2	NM_013247	exon1	c.C203G	p.P68R	CTGAACCCCGAGC	.	77	31	73	0	.	91	G	74757336	C	G	74757336	3	3	55	1	0	0	0	0	1	0	0	0	7454	623	22	4	205	4	HTRA2	2	74757336	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	30684004	74757336	168442037	20	7995											
GLI2	2736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121740293	121740293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GLI2	NM_005270	exon10	c.T1520C	p.F507S	TCTAGTTCGAGGG	.	68	22	77	1	.	954	C	121740293	T	C	121740293	3	2	55	1	0	0	0	0	1	0	0	0	6438	1797	62	2	1558	2	GLI2	2	121740293	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	46982957	121740293	121459080	21	7996											
GTDC1	79712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144903285	144903285	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GTDC1	NM_001006636	exon5	c.G201T	p.V67V	GTTAAGCACTGAA	.	66	19	103	0	.	91	A	144903285	C	A	144903285	2	1	55	1	0	0	0	0	0	0	0	1	6851	697	25	3		3	GTDC1	2	144903285	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	23162992	144903285	98296088	22	7997											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171715379	171715379	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GAD1	NM_000817	exon16	c.T1587A	p.P529P	CAGCCCTCAACGA	.	152	61	217	0	.	91	A	171715379	T	A	171715379	2	1	55	1	0	0	0	0	0	0	0	1	6179	1538	54	4		4	GAD1	2	171715379	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	26812094	171715379	71483994	23	7998											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179434262	179434262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TTN	NM_001267550	exon326	c.C76597A	p.P25533T	TTATAGGAACAAA	.	246	90	270	0	.	636	T	179434262	G	T	179434262	3	4	55	1	0	0	0	0	1	0	0	0	16732	1174	41	3	31530	3	TTN	2	179434262	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	7718883	179434262	63765111	24	7999											
ABCA12	26154	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	215815649	215815649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ABCA12	NM_173076	exon45	c.A6806G	p.K2269R	ATAATCTTTTTGT	.	219	21	302	1	.	99	C	215815649	T	C	215815649	3	2	55	1	0	0	0	0	1	0	0	0	30	1609	56	2	1017	2	ABCA12	2	215815649	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	36381387	215815649	27383724	25	8000											
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216930060	216930060	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PECR	NM_018441	exon3	c.G399C	p.T133T	GGTACCCGTCAGG	.	126	55	157	0	.	90	G	216930060	C	G	216930060	2	3	55	1	0	0	0	0	0	0	0	1	11717	639	23	4		4	PECR	2	216930060	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1114411	216930060	26269313	26	8001											
PNKD	25953	ucsc.edu;bcgsc.ca	37	2	219204528	219204528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PNKD	NM_015488	exon3	c.T259C	p.W87R	CGCACCTGGCTCG	.	61	6	82	0	.	90	C	219204528	T	C	219204528	3	2	55	1	0	0	0	0	1	0	0	0	12146	1580	55	2	634	2	PNKD	2	219204528	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	2274468	219204528	23994845	27	8002											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225721666	225721666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DOCK10	NM_014689	exon15	c.C1719G	p.D573E	GTCTCTGTCCACA	.	161	61	230	0	.	92	C	225721666	G	C	225721666	3	2	55	1	0	0	0	0	1	0	0	0	4685	1368	48	4	5009	4	DOCK10	2	225721666	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	6517138	225721666	17477707	28	8003											
COL4A4	1286	broad.mit.edu;mdanderson.org	37	2	227892673	227892673	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	COL4A4	NM_000092	exon42	c.T4026A	p.P1342P	CTCTCCAGGTGGC	.	68	34	72	0	.	142	T	227892673	A	T	227892673	2	4	55	1	0	0	0	0	0	0	0	1	3693	175	7	4		4	COL4A4	2	227892673	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	2171007	227892673	15306700	29	8004											
SEPT2	4735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242289532	242289532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SEPT2	NM_001008491	exon13	c.G1029A	p.M343I	GCAGATGCAGATG	.	288	60	386	1	.	68	A	242289532	G	A	242289532	3	1	55	1	0	0	0	0	1	0	0	0	14064	1319	46	3	1071	3	SEPT2	2	242289532	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	14396859	242289532	909841	30	8005											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	200	13	239	1	.	24361	G	41266124	A	G	41266124	3	3	55	1	0	0	0	0	1	0	0	0	4016	391	14	2	127	2	CTNNB1	3	41266124	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10		41266124	156756306	31	8006											
SLC6A20	54716	broad.mit.edu;bcgsc.ca	37	3	45807036	45807036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SLC6A20	NM_020208	exon8	c.C1296T	p.A432A	TGAGATGGCCTCC	.	88	12	131	0	.	92	A	45807036	G	A	45807036	2	1	55	1	0	0	0	0	0	0	0	1	14684	1335	47	3		3	SLC6A20	3	45807036	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	4540912	45807036	152215394	32	8007											
PLXNB1	5364	broad.mit.edu;bcgsc.ca	37	3	48465123	48465123	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PLXNB1	NM_001130082	exon3	c.898delG	p.A300fs	GTGCAGCCGAGGA	.	28	8	44	0	.	293	-	48465123	C	-	48465123	7	5	55	1	0	1	0	1	0	0	0	0	12123	739	26	0	5653	0	PLXNB1	3	48465123	Frame_Shift_Del	DEL	C	TCGA-DD-A11D-01A-11D-A12Z-10	2658087	48465123	149557307	33	8008											
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49738946	49738946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RNF123	NM_022064	exon16	c.G1300T	p.V434F	TCCGTCGTCTTCT	.	101	53	126	0	.	584	T	49738946	G	T	49738946	3	4	55	1	0	0	0	0	1	0	0	0	13433	1145	40	1	1358	1	RNF123	3	49738946	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	1273823	49738946	148283484	34	8009											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52394057	52394057	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DNAH1	NM_015512	exon27	c.4533delG	p.V1511fs	GAACGTGGTCAGC	.	93	20	99	0	.	67	-	52394057	G	-	52394057	7	5	55	1	0	1	0	1	0	0	0	0	4597	1335	47	0	4635	0	DNAH1	3	52394057	Frame_Shift_Del	DEL	G	TCGA-DD-A11D-01A-11D-A12Z-10	2655111	52394057	145628373	35	8010											
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126708420	126708420	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PLXNA1	NM_032242	exon1	c.G984A	p.L328L	CCAGCTGGGCCTG	.	66	24	83	0	.	93	A	126708420	G	A	126708420	2	1	55	1	0	0	0	0	0	0	0	1	12119	1335	47	3		3	PLXNA1	3	126708420	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	74314363	126708420	71314010	36	8011											
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	133099005	133099005	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TMEM108	NM_023943	exon4	c.C450T	p.T150T	GGCCACCAGCCGC	.	52	24	41	0	.	94	T	133099005	C	T	133099005	2	4	55	1	0	0	0	0	0	0	0	1	16021	581	21	3		3	TMEM108	3	133099005	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	6390585	133099005	64923425	37	8012											
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140178531	140178531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CLSTN2	NM_022131	exon7	c.T1142C	p.I381T	TCACCATCACCAT	.	90	39	84	0	.	157	C	140178531	T	C	140178531	3	2	55	1	0	0	0	0	1	0	0	0	3562	1435	50	2	1168	2	CLSTN2	3	140178531	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	7079526	140178531	57843899	38	8013											
ECE2	9718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183976322	183976322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ECE2	NM_032331	exon3	c.G727T	p.D243Y	CTTCAGGACTCAG	.	101	35	113	1	.	94	T	183976322	G	T	183976322	3	4	55	1	0	0	0	0	1	0	0	0	4890	1174	41	3	737	3	ECE2	3	183976322	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	43797791	183976322	14046108	39	8014											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	3209018	3209019	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTT	NM_002111	exon45	c.6086_6087insA	p.A2029fs	GCATGGCCCAGTT	.	65	19	93	0	.	281	A	3209019	-	A	3209018	7	5	55	1	0	1	1	0	0	0	0	0	7457	739	26	0	6264	0	HTT	4	3209018	Frame_Shift_Ins	INS	-	TCGA-DD-A11D-01A-11D-A12Z-10		3209018	187945258	40	8015	43	2									
HTT	3064	hgsc.bcm.edu;bcgsc.ca	37	4	3209019	3209019	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTT	NM_002111	exon45	c.6087delC	p.A2029fs	CATGGCCCAGTTG	.	65	0	93	0	.	281	-	3209019	C	-	3209019	7	5	55	1	0	1	0	1	0	0	0	0	7457	610	22	0	6265	0	HTT	4	3209019	Frame_Shift_Del	DEL	C	TCGA-DD-A11D-01A-11D-A12Z-10	1	3209019	187945257	41	8016	43	2									
PCDH7	5099	broad.mit.edu;mdanderson.org	37	4	30723824	30723824	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PCDH7	NM_032457	exon1	c.G780T	p.L260L	GCAGCTGATCGTG	.	11	7	14	0	.	229	T	30723824	G	T	30723824	2	4	55	1	0	0	0	0	0	0	0	1	11516	1277	45	3		3	PCDH7	4	30723824	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	27514805	30723824	160430452	42	8017											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55598063	55598063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	KIT	NM_000222	exon16	c.C2260T	p.P754S	GTGACTCCCGCCA	.	138	50	182	0	.	20166	T	55598063	C	T	55598063	3	4	55	1	0	0	0	0	1	0	0	0	8329	855	30	3	2322	3	KIT	4	55598063	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	24874239	55598063	135556213	43	8018											
HSD17B11	51170	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88293884	88293884	+	Silent	SNP	C	C	A	rs114331860	byfrequency;alternate_allele	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HSD17B11	NM_016245	exon4	c.G534T	p.S178S	GGGGACCGAGACA	.	131	60	186	0	C|0.995;T|0.005	92	A	88293884	C	A	88293884	2	1	55	1	0	0	0	0	0	0	0	1	7380	639	23	1		1	HSD17B11	4	88293884	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	32695821	88293884	102860392	44	8019											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155156800	155156800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DCHS2	NM_017639	exon25	c.T7639G	p.F2547V	CTAAAAAGGAGAC	.	157	61	192	0	.	94	C	155156800	A	C	155156800	3	2	55	1	0	0	0	0	1	0	0	0	4288	72	3	5	1115	5	DCHS2	4	155156800	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	66862916	155156800	35997476	45	8020											
TRIML2	205860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	189026083	189026083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	TRIML2,brain,glioma,0	TRIML2	NM_173553	exon2	c.T43C	p.L15L	GGAATAACTTCTA	.	164	45	216	1	.	90	G	189026083	A	G	189026083	2	3	55	1	0	0	0	0	0	0	0	1	16548	40	2	2		2	TRIML2	4	189026083	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	33869283	189026083	2128193	46	8021											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71491564	71491564	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAP1B	NM_005909	exon5	c.T2382A	p.A794A	AGAGGCTGTCGCT	.	77	42	66	0	.	155	A	71491564	T	A	71491564	2	1	55	1	0	0	0	0	0	0	0	1	9228	1567	55	4		4	MAP1B	5	71491564	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10		71491564	109423696	47	8022											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71494133	71494133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAP1B	NM_005909	exon5	c.C4951A	p.Q1651K	TTTGGCCAAGAAT	.	138	33	128	0	.	155	A	71494133	C	A	71494133	3	1	55	1	0	0	0	0	1	0	0	0	9228	595	21	3	4969	3	MAP1B	5	71494133	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	2569	71494133	109421127	48	8023											
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72866457	72866457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	UTP15	NM_032175	exon6	c.G594T	p.E198D	GAGTGAGAGTGTT	.	246	67	227	0	.	90	T	72866457	G	T	72866457	3	4	55	1	0	0	0	0	1	0	0	0	17094	933	33	3	612	3	UTP15	5	72866457	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	1372324	72866457	108048803	49	8024											
CKMT2	1160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80548514	80548514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CKMT2	NM_001825	exon4	c.C153A	p.S51R	ACACAGCGCAGAC	.	51	36	42	0	.	90	A	80548514	C	A	80548514	3	1	55	1	0	0	0	0	1	0	0	0	3451	782	27	1	159	1	CKMT2	5	80548514	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	7682057	80548514	100366746	50	8025											
RGMB	285704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	98115463	98115463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_001012761	exon4	c.C439G	p.H147D	GTATACCATTCTG	.	86	50	94	0	.	.	G	98115463	C	G	98115463	3	3	55	1	0	0	0	0	1	0	0	0	13281	594	21	4	449	4	RGMB	5	98115463	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	17566949	98115463	82799797	51	8026											
RGMB	285704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	98129453	98129453	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_001012761	exon5	c.T1433A	p.L478X	TGTTTTTGTAGGG	.	247	135	204	0	.	.	A	98129453	T	A	98129453	4	1	55	1	0	0	0	0	0	1	0	0	13281	1821	63	4	1447	4	RGMB	5	98129453	Nonsense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	13990	98129453	82785807	52	8027											
FER	2241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	108203627	108203627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FER	NM_005246	exon6	c.T641C	p.M214T	AAAAGATGCAAGA	.	237	126	237	0	.	946	C	108203627	T	C	108203627	3	2	55	1	0	0	0	0	1	0	0	0	5813	1464	51	2	655	2	FER	5	108203627	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	10074174	108203627	72711633	53	8028											
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167846	140167846	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PCDHA1	NM_031410	exon1	c.G1971A	p.P657P	TGAGCCGGCGCTG	.	175	102	163	0	.	23	A	140167846	G	A	140167846	2	1	55	1	0	0	0	0	0	0	0	1	11519	1103	39	1		1	PCDHA1	5	140167846	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	31964219	140167846	40747414	54	8029											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140209428	140209428	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PCDHA6	NM_018909	exon1	c.A1752T	p.S584S	GCGGTCACTGGGT	.	376	19	284	0	.	92	T	140209428	A	T	140209428	2	4	55	1	0	0	0	0	0	0	0	1	11528	146	6	4		4	PCDHA6	5	140209428	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	41582	140209428	40705832	55	8030											
DUSP22	56940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	348816	348816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DUSP22	NM_020185	exon7	c.T483A	p.D161E	GCAGGATGCAGAA	.	161	50	175	1	.	252	A	348816	T	A	348816	3	1	55	1	0	0	0	0	1	0	0	0	4821	1461	51	4	509	4	DUSP22	6	348816	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10		348816	170766251	56	8031											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17828535	17828535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	KIF13A	NM_001105567	exon14	c.C1468G	p.Q490E	AGTGCTGAGGCTG	.	192	54	268	0	.	137	C	17828535	G	C	17828535	3	2	55	1	0	0	0	0	1	0	0	0	8274	1299	45	4	4078	4	KIF13A	6	17828535	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	17479719	17828535	153286532	57	8032											
MBOAT1	154141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20151445	20151445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MBOAT1	NM_001080480	exon3	c.G294T	p.M98I	AGTGACCATGATT	.	75	32	128	0	.	68	A	20151445	C	A	20151445	3	1	55	1	0	0	0	0	1	0	0	0	9356	594	21	3	1237	3	MBOAT1	6	20151445	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	2322910	20151445	150963622	58	8033											
CLPS	1208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35762977	35762977	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CLPS	NM_001832	exon3	c.C285T	p.S95S	GGTGATGGAGCCC	.	192	49	248	0	.	90	A	35762977	G	A	35762977	2	1	55	1	0	0	0	0	0	0	0	1	3553	1335	47	3		3	CLPS	6	35762977	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	15611532	35762977	135352090	59	8034											
GLO1	2739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38650599	38650599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GLO1	NM_006708	exon4	c.G361C	p.D121H	GAGGGTCTGAATT	.	120	17	135	0	.	227	G	38650599	C	G	38650599	3	3	55	1	0	0	0	0	1	0	0	0	6449	913	32	4	205	4	GLO1	6	38650599	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	2887622	38650599	132464468	60	8035											
GLO1	2739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	38650627	38650627	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GLO1	NM_006708	exon4	c.G333A	p.E111E	CTGGGTCTCATCA	.	119	11	151	0	.	227	T	38650627	C	T	38650627	2	4	55	1	0	0	0	0	0	0	0	1	6449	912	32	3		3	GLO1	6	38650627	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	28	38650627	132464440	61	8036											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38738285	38738285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DNAH8	NM_001206927	exon12	c.G1714A	p.E572K	GTTTCAGAAATGT	.	112	11	102	0	.	615	A	38738285	G	A	38738285	3	1	55	1	0	0	0	0	1	0	0	0	4607	943	33	3	1093	3	DNAH8	6	38738285	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	87658	38738285	132376782	62	8037											
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41051832	41051832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	NFYA	NM_002505	exon4	c.C210G	p.I70M	GCTAATCACATCA	.	126	49	143	0	.	226	G	41051832	C	G	41051832	3	3	55	1	0	0	0	0	1	0	0	0	10389	816	29	4	220	4	NFYA	6	41051832	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	2313547	41051832	130063235	63	8038											
TRERF1	55809	broad.mit.edu;bcgsc.ca	37	6	42196208	42196208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TRERF1	NM_033502	exon18	c.G3478A	p.D1160N	GGATGTCCACATC	.	85	6	108	0	.	230	T	42196208	C	T	42196208	3	4	55	1	0	0	0	0	1	0	0	0	16472	855	30	3	128	3	TRERF1	6	42196208	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1144376	42196208	128918859	64	8039											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	42619803	42619803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	UBR2	NM_015255	exon24	c.G2608C	p.D870H	AGAGAAGATACAG	.	174	13	234	0	.	94	C	42619803	G	C	42619803	3	2	55	1	0	0	0	0	1	0	0	0	16899	942	33	4	2848	4	UBR2	6	42619803	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	423595	42619803	128495264	65	8040											
TINAG	27283	ucsc.edu;bcgsc.ca	37	6	54254594	54254594	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TINAG	NM_014464	exon11	c.T1302C	p.A434A	GATTGCTGCCAAT	.	46	4	51	0	.	93	C	54254594	T	C	54254594	2	2	55	1	0	0	0	0	0	0	0	1	15918	1567	55	2		2	TINAG	6	54254594	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	11634791	54254594	116860473	66	8041											
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	72003250	72003250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OGFRL1	NM_024576	exon3	c.C336G	p.I112M	AGATATCCGATAT	.	216	16	232	0	.	68	G	72003250	C	G	72003250	3	3	55	1	0	0	0	0	1	0	0	0	10844	845	30	4	346	4	OGFRL1	6	72003250	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	17748656	72003250	99111817	67	8042											
POU3F2	5454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99283990	99283990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	POU3F2	NM_005604	exon1	c.C1241T	p.P414L	TGACCCCTCCCGG	.	35	19	56	0	.	90	T	99283990	C	T	99283990	3	4	55	1	0	0	0	0	1	0	0	0	12275	681	24	3	1243	3	POU3F2	6	99283990	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	27280740	99283990	71831077	68	8043											
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	102516324	102516324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GRIK2	NM_021956	exon16	c.G2665A	p.E889K	ACAGAAGAAGTTA	.	161	14	161	0	.	157	A	102516324	G	A	102516324	3	1	55	1	0	0	0	0	1	0	0	0	6774	943	33	3	2900	3	GRIK2	6	102516324	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	3232334	102516324	68598743	69	8044											
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	137323493	137323493	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	IL20RA	NM_014432	exon8	c.865-1G>C	.	CAAAATCTATAAA	.	49	7	61	0	.	94	G	137323493	C	G	137323493	5	3	55	1	0	0	0	0	0	0	1	0	7668	927	32	4	801	4	IL20RA	6	137323493	Splice_Site	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	34807169	137323493	33791574	70	8045											
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138734131	138734131	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HEBP2	NM_014320	exon4	c.C534T	p.G178G	TGCAGGCTACAAC	.	133	33	166	0	.	90	T	138734131	C	T	138734131	2	4	55	1	0	0	0	0	0	0	0	1	7037	784	28	3		3	HEBP2	6	138734131	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1410638	138734131	32380936	71	8046											
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160196246	160196246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ACAT2	NM_005891	exon5	c.G535C	p.D179H	GATCAGGACAAGG	.	118	73	70	0	.	91	C	160196246	G	C	160196246	3	2	55	1	0	0	0	0	1	0	0	0	122	1174	41	4	553	4	ACAT2	6	160196246	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	21462115	160196246	10918821	72	8047											
RNASET2	8635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	167366035	167366035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RNASET2	NM_003730	exon2	c.G88A	p.D30N	GGTTGTCACTGTT	.	231	27	265	0	.	90	T	167366035	C	T	167366035	3	4	55	1	0	0	0	0	1	0	0	0	13418	840	29	3	714	3	RNASET2	6	167366035	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	7169789	167366035	3749032	73	8048											
CYP2W1	54905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1026794	1026794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CYP2W1	NM_017781	exon6	c.C871A	p.L291M	TGCACCCTGGACA	.	80	34	86	0	.	90	A	1026794	C	A	1026794	3	1	55	1	0	0	0	0	1	0	0	0	4176	680	24	3	893	3	CYP2W1	7	1026794	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10		1026794	158111869	74	8049											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1539152	1539152	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_001080453	exon6	c.G801T	p.L267L	CTGCAGCAGCACG	.	55	38	51	0	.	.	A	1539152	C	A	1539152	2	1	55	1	0	0	0	0	0	0	0	1	7775	697	25	3		3	INTS1	7	1539152	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	512358	1539152	157599511	75	8050											
ZDHHC4	55146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6624765	6624765	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZDHHC4	NM_018106	exon7	c.T615G	p.A205A	CTCGGCTGCCACC	.	349	175	255	1	.	154	G	6624765	T	G	6624765	2	3	55	1	0	0	0	0	0	0	0	1	17614	1567	55	5		5	ZDHHC4	7	6624765	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	5085613	6624765	152513898	76	8051											
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20199316	20199316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MACC1	NM_182762	exon5	c.G668T	p.G223V	ACTGACCCTCCTT	.	257	74	225	0	.	93	A	20199316	C	A	20199316	3	1	55	1	0	0	0	0	1	0	0	0	9143	623	22	3	1902	3	MACC1	7	20199316	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	13574551	20199316	138939347	77	8052											
CHN2	1124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29519792	29519792	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CHN2	NM_001039936	exon1	c.G66A	p.Q22Q	TAAGCAGGGCAGG	.	257	70	212	1	.	229	A	29519792	G	A	29519792	2	1	55	1	0	0	0	0	0	0	0	1	3363	991	35	3		3	CHN2	7	29519792	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	9320476	29519792	129618871	78	8053											
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34097695	34097695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	BMPER	NM_133468	exon11	c.A952T	p.N318Y	TCTATCAATTGTA	.	422	125	346	0	.	92	T	34097695	A	T	34097695	3	4	55	1	0	0	0	0	1	0	0	0	1468	130	5	4	990	4	BMPER	7	34097695	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	4577903	34097695	125040968	79	8054											
TFPI2	7980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	93516721	93516721	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TFPI2	NM_006528	exon4	c.A483G	p.P161P	ATCTTTTGGACTG	.	118	70	102	0	.	515	C	93516721	T	C	93516721	2	2	55	1	0	0	0	0	0	0	0	1	15806	1799	63	2		2	TFPI2	7	93516721	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	59419026	93516721	65621942	80	8055											
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	117865018	117865018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ANKRD7	NM_019644	exon1	c.T134C	p.L45P	AATACCTTCAGAT	.	187	8	177	0	.	90	C	117865018	T	C	117865018	3	2	55	1	0	0	0	0	1	0	0	0	686	1609	56	2	136	2	ANKRD7	7	117865018	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	24348297	117865018	41273645	81	8056											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	3565967	3565967	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CSMD1	NM_033225	exon7	c.978delC	p.P326fs	CTTGCTGGGCAGC	.	158	56	171	0	.	86	-	3565967	G	-	3565967	7	5	55	1	0	1	0	1	0	0	0	0	3944	1335	47	0	9785	0	CSMD1	8	3565967	Frame_Shift_Del	DEL	G	TCGA-DD-A11D-01A-11D-A12Z-10		3565967	142798055	82	8057											
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39644537	39644537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ADAM2	NM_001464	exon10	c.C847A	p.Q283K	TCCCTTGAAAGGT	.	308	110	392	0	.	227	T	39644537	G	T	39644537	3	4	55	1	0	0	0	0	1	0	0	0	241	1299	45	3	1404	3	ADAM2	8	39644537	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	36078570	39644537	106719485	83	8058											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41559138	41559138	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ANK1	NM_001142446	exon22	c.A2490G	p.L830L	ACTGACTAACTAA	.	85	31	148	0	.	716	C	41559138	T	C	41559138	2	2	55	1	0	0	0	0	0	0	0	1	620	1519	53	2		2	ANK1	8	41559138	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	1914601	41559138	104804884	84	8059											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69104677	69104677	+	Silent	SNP	G	G	A	rs138983574	byfrequency	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PREX2	NM_024870	exon37	c.G4521A	p.G1507G	TTCTGGGGTTGGA	.	79	21	88	0	G|0.999;A|0.001	390	A	69104677	G	A	69104677	2	1	55	1	0	0	0	0	0	0	0	1	12477	1219	43	3		3	PREX2	8	69104677	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	27545539	69104677	77259345	85	8060											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110454292	110454292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PKHD1L1	NM_177531	exon35	c.A4261G	p.T1421A	GGGGACACAGTGG	.	200	76	245	0	.	145	G	110454292	A	G	110454292	3	3	55	1	0	0	0	0	1	0	0	0	11972	159	6	2	4399	2	PKHD1L1	8	110454292	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	41349615	110454292	35909730	86	8061											
FREM1	158326	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	14868953	14868953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FREM1	NM_144966	exon3	c.C23A	p.A8D	TTCGCAGCCCCCC	.	10	5	17	0	.	138	T	14868953	G	T	14868953	3	4	55	1	0	0	0	0	1	0	0	0	6044	971	34	3	6710	3	FREM1	9	14868953	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10		14868953	126344478	87	8062											
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87570246	87570246	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	NTRK2	NM_006180	exon19	c.G1986T	p.T662T	GCCCACGGAACTG	.	38	14	41	0	.	1404	T	87570246	G	T	87570246	2	4	55	1	0	0	0	0	0	0	0	1	10707	1103	39	1		1	NTRK2	9	87570246	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	72701293	87570246	53643185	88	8063											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114213731	114213731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	KIAA0368	NM_001080398	exon4	c.A661G	p.S221G	GGGTGCTAGAGAG	.	165	66	243	0	.	68	C	114213731	T	C	114213731	3	2	55	1	0	0	0	0	1	0	0	0	8171	1522	53	2	5584	2	KIAA0368	9	114213731	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	26643485	114213731	26999700	89	8064											
LCN8	138307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139651621	139651621	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	LCN8	NM_178469	exon3	c.25-1G>T	.	TCCAATCTAGAGA	.	52	21	79	0	.	91	A	139651621	C	A	139651621	5	1	55	1	0	0	0	0	0	0	1	0	8686	927	32	3	458	3	LCN8	9	139651621	Splice_Site	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	25437890	139651621	1561810	90	8065											
CACNA1B	774	broad.mit.edu;bcgsc.ca	37	9	140991060	140991060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CACNA1B	NM_001243812	exon36	c.C5219A	p.A1740E	CGGCTGCGTGGTA	.	75	6	81	0	.	138	A	140991060	C	A	140991060	3	1	55	1	0	0	0	0	1	0	0	0	2539	768	27	1	5361	1	CACNA1B	9	140991060	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1339439	140991060	222371	91	8066											
USP6NL	9712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	11532861	11532861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	USP6NL	NM_001080491	exon8	c.T564A	p.H188Q	AAGCACATGGAAT	.	152	64	203	0	.	628	T	11532861	A	T	11532861	3	4	55	1	0	0	0	0	1	0	0	0	17084	214	8	4	2001	4	USP6NL	10	11532861	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10		11532861	124001886	92	8067											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12131171	12131171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DHTKD1	NM_018706	exon5	c.C904T	p.R302C	AAAACTCGCGGCA	.	49	12	57	0	.	515	T	12131171	C	T	12131171	3	4	55	1	0	0	0	0	1	0	0	0	4500	884	31	1	922	1	DHTKD1	10	12131171	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	598310	12131171	123403576	93	8068											
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38343322	38343322	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF33A	NM_006954	exon5	c.C270T	p.H90H	TGATCACCTGAAA	.	110	52	181	0	.	93	T	38343322	C	T	38343322	2	4	55	1	0	0	0	0	0	0	0	1	17851	506	18	3		3	ZNF33A	10	38343322	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	26212151	38343322	97191425	94	8069											
ZNF239	8187	hgsc.bcm.edu;bcgsc.ca	37	10	44052345	44052346	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF239	NM_001099284	exon3	c.1182_1183del	p.394_395del	GGACTCTGAGATG	.	224	65	287	0	.	90	-	44052346	TG	-	44052345	7	5	55	1	0	1	0	1	0	0	0	0	17788	1588	55	0	197	0	ZNF239	10	44052345	Frame_Shift_Del	DEL	TG	TCGA-DD-A11D-01A-11D-A12Z-10	5709023	44052345	91482402	95	8070											
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4903945	4903945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR51T1	NM_001004759	exon1	c.G897T	p.R299S	CCCAAGGGTGCTC	.	178	69	238	0	.	115	T	4903945	G	T	4903945	3	4	55	1	0	0	0	0	1	0	0	0	11106	1223	43	3	899	3	OR51T1	11	4903945	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10		4903945	130102571	96	8071											
OR5P3	120066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7846818	7846818	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR5P3	NM_153445	exon1	c.C702A	p.R234R	CTTGTGGCGGCCC	.	144	63	179	0	.	69	T	7846818	G	T	7846818	2	4	55	1	0	0	0	0	0	0	0	1	11179	1190	42	3		3	OR5P3	11	7846818	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	2942873	7846818	127159698	97	8072											
C11orf16	56673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8947426	8947426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	C11orf16	NM_020643	exon5	c.T788C	p.F263S	CACAGGAATGGAG	.	49	19	66	0	.	92	G	8947426	A	G	8947426	3	3	55	1	0	0	0	0	1	0	0	0	1631	246	9	2	623	2	C11orf16	11	8947426	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	1100608	8947426	126059090	98	8073											
PDHX	8050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	35016491	35016491	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PDHX	NM_003477	exon11	c.C1278T	p.D426D	CATCGACGAATTT	.	143	9	182	0	.	226	T	35016491	C	T	35016491	2	4	55	1	0	0	0	0	0	0	0	1	11667	535	19	1		1	PDHX	11	35016491	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	26069065	35016491	99990025	99	8074											
TSPAN18	90139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44931287	44931287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TSPAN18	NM_130783	exon4	c.T95C	p.I32T	TCGGCATCTGGGT	.	60	27	70	1	.	68	C	44931287	T	C	44931287	3	2	55	1	0	0	0	0	1	0	0	0	16639	1435	50	2	101	2	TSPAN18	11	44931287	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	9914796	44931287	90075229	100	8075											
ZNF408	79797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46726465	46726465	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF408	NM_024741	exon5	c.G1215T	p.G405G	CCGTGGGGTGCGG	.	91	12	140	0	.	90	T	46726465	G	T	46726465	2	4	55	1	0	0	0	0	0	0	0	1	17885	1219	43	3		3	ZNF408	11	46726465	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	1795178	46726465	88280051	101	8076											
CELF1	10658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	47504291	47504291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CELF1	NM_001172639	exon9	c.G721T	p.G241X	GGTTTCCCCACAC	.	206	89	274	0	.	92	A	47504291	C	A	47504291	4	1	55	1	0	0	0	0	0	1	0	0	3215	632	22	3	848	3	CELF1	11	47504291	Nonsense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	777826	47504291	87502225	102	8077											
OR8J1	219477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56127796	56127796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR8J1	NM_001005205	exon1	c.T74C	p.I25T	TCCAGATTCCCCT	.	173	71	167	0	.	70	C	56127796	T	C	56127796	3	2	55	1	0	0	0	0	1	0	0	0	11241	1493	52	2	76	2	OR8J1	11	56127796	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	8623505	56127796	78878720	103	8078											
POLR2G	5436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62532653	62532653	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	POLR2G	NM_002696	exon4	c.283-1G>T	.	TTTCTAGGTTGGA	.	191	13	264	0	.	90	T	62532653	G	T	62532653	5	4	55	1	0	0	0	0	0	0	1	0	12220	1014	35	3	296	3	POLR2G	11	62532653	Splice_Site	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	6404857	62532653	72473863	104	8079											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64520562	64520562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PYGM	NM_005609	exon12	c.G1501T	p.A501S	CCTCTGCCAGCCC	.	134	50	195	0	.	92	A	64520562	C	A	64520562	3	1	55	1	0	0	0	0	1	0	0	0	12862	739	26	3	1063	3	PYGM	11	64520562	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1987909	64520562	70485954	105	8080											
CD248	57124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66082959	66082959	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CD248	NM_020404	exon1	c.C1540G	p.P514A	TAGGGGGCTGGTG	.	160	68	189	0	.	154	C	66082959	G	C	66082959	3	2	55	1	0	0	0	0	1	0	0	0	2989	1203	42	4	737	4	CD248	11	66082959	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	1562397	66082959	68923557	106	8081											
XRRA1	143570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74617459	74617459	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	XRRA1	NM_182969	exon10	c.C804A	p.I268I	GTATGGGATCCTG	.	251	116	355	0	.	68	T	74617459	G	T	74617459	2	4	55	1	0	0	0	0	0	0	0	1	17458	1164	41	3		3	XRRA1	11	74617459	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	8534500	74617459	60389057	107	8082											
PGR	5241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100998683	100998683	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PGR	NM_000926	exon1	c.G1119A	p.A373A	AGGGTACGCGTCG	.	111	42	148	0	.	652	T	100998683	C	T	100998683	2	4	55	1	0	0	0	0	0	0	0	1	11805	523	19	1		1	PGR	11	100998683	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	26381224	100998683	34007833	108	8083											
SCN3B	55800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123516374	123516374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SCN3B	NM_018400	exon2	c.C140T	p.S47F	ATGCAGGAGATGC	.	105	42	122	0	.	156	A	123516374	G	A	123516374	3	1	55	1	0	0	0	0	1	0	0	0	13919	1174	41	3	523	3	SCN3B	11	123516374	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	22517691	123516374	11490142	109	8084											
MAGOHB	55110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10766087	10766087	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAGOHB	NM_018048	exon1	c.C45T	p.H15H	GCCCTTGTGCCCT	.	74	32	88	0	.	153	A	10766087	G	A	10766087	2	1	55	1	0	0	0	0	0	0	0	1	9195	1368	48	3		3	MAGOHB	12	10766087	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10		10766087	123085808	110	8085											
OVCH1	341350	broad.mit.edu;bcgsc.ca	37	12	29649135	29649142	+	Frame_Shift_Del	DEL	TGTGCTGC	TGTGCTGC	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	TGTGCTGC	TGTGCTGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OVCH1	NM_183378	exon3	c.253_260del	p.85_87del	AGGCAGTGTGCTG	.	64	8	80	0	.	210	-	29649142	TGTGCTGC	-	29649135	7	5	55	1	0	1	0	1	0	0	0	0	11323	1696	59	0	3248	0	OVCH1	12	29649135	Frame_Shift_Del	DEL	TGTGCTGC	TCGA-DD-A11D-01A-11D-A12Z-10	18883048	29649135	104202760	111	8086											
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	100728028	100728028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SCYL2	NM_017988	exon14	c.A1846G	p.M616V	CATATAATGCAAG	.	36	20	55	0	.	336	G	100728028	A	G	100728028	3	3	55	1	0	0	0	0	1	0	0	0	13948	101	4	2	1896	2	SCYL2	12	100728028	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	71078893	100728028	33123867	112	8087											
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130842075	130842075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PIWIL1	NM_004764	exon14	c.A1642G	p.K548E	CAGCAAAAGGTCA	.	185	25	225	0	.	92	G	130842075	A	G	130842075	3	3	55	1	0	0	0	0	1	0	0	0	11957	15	1	2	1692	2	PIWIL1	12	130842075	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	30114047	130842075	3009820	113	8088											
IFT88	8100	broad.mit.edu;bcgsc.ca	37	13	21264933	21264933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	IFT88	NM_175605	exon27	c.A2359G	p.S787G	TATGAAAGTAGCA	.	86	5	140	0	.	91	G	21264933	A	G	21264933	3	3	55	1	0	0	0	0	1	0	0	0	7566	72	3	2	2457	2	IFT88	13	21264933	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10		21264933	93904945	114	8089											
HTR2A	3356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47409332	47409332	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTR2A	NM_000621	exon4	c.C1056T	p.S352S	ATTGCAGGACTCT	.	154	48	202	0	.	519	A	47409332	G	A	47409332	2	1	55	1	0	0	0	0	0	0	0	1	7441	987	35	3		3	HTR2A	13	47409332	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	26144399	47409332	67760546	115	8090											
DIS3	22894	ucsc.edu;bcgsc.ca	37	13	73355910	73355910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DIS3	NM_001128226	exon1	c.C61T	p.R21C	GCTCGCGCACGAT	.	40	4	59	0	.	90	A	73355910	G	A	73355910	3	1	55	1	0	0	0	0	1	0	0	0	4535	1087	38	1	2971	1	DIS3	13	73355910	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	25946578	73355910	41813968	116	8091											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45665463	45665463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FANCM	NM_020937	exon21	c.G5429T	p.R1810I	CTCTTAGACTTCC	.	134	62	195	0	.	569	T	45665463	G	T	45665463	3	4	55	1	0	0	0	0	1	0	0	0	5671	942	33	3	5511	3	FANCM	14	45665463	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10		45665463	61684077	117	8092											
SAV1	60485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51107527	51107527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SAV1	NM_021818	exon4	c.T891A	p.N297K	ATATGGATTTGCA	.	258	84	333	0	.	658	T	51107527	A	T	51107527	3	4	55	1	0	0	0	0	1	0	0	0	13856	330	12	4	268	4	SAV1	14	51107527	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	5442064	51107527	56242013	118	8093											
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59112430	59112430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DACT1	NM_016651	exon4	c.C1089G	p.N363K	CGTGAACGCTGAC	.	75	29	72	0	.	291	G	59112430	C	G	59112430	3	3	55	1	0	0	0	0	1	0	0	0	4222	535	19	4	1103	4	DACT1	14	59112430	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	8004903	59112430	48237110	119	8094											
TGFB3	7043	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	76437499	76437499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TGFB3	NM_003239	exon3	c.G616C	p.D206H	CAGTGTCAGTGAC	.	42	10	62	0	.	524	G	76437499	C	G	76437499	3	3	55	1	0	0	0	0	1	0	0	0	15816	826	29	4	642	4	TGFB3	14	76437499	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	17325069	76437499	30912041	120	8095											
PAK6	56924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	40565801	40565801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PAK6	NM_020168	exon9	c.G1667A	p.W556X	ACGTCCCTAAGAG	.	198	56	243	0	.	996	A	40565801	C	A	40565801	4	1	55	1	0	0	0	0	0	1	0	0	11404	681	24	3	1689	3	PAK6	15	40565801	Nonsense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10		40565801	61965591	121	8096											
HAUS2	55142	ucsc.edu;bcgsc.ca	37	15	42853492	42853492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HAUS2	NM_018097	exon4	c.G281T	p.S94I	TGCAAAGCATGAA	.	39	4	63	0	.	90	T	42853492	G	T	42853492	3	4	55	1	0	0	0	0	1	0	0	0	6966	971	34	3	295	3	HAUS2	15	42853492	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	2287691	42853492	59677900	122	8097											
PDXDC1	23042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15103555	15103555	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PDXDC1	NM_015027	exon8	c.G666A	p.E222E	CCTGGAGAAACTG	.	410	85	582	0	.	91	A	15103555	G	A	15103555	2	1	55	1	0	0	0	0	0	0	0	1	11696	933	33	3		3	PDXDC1	16	15103555	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10		15103555	75251198	123	8098											
GGA2	23062	ucsc.edu;bcgsc.ca	37	16	23504772	23504772	+	Missense_Mutation	SNP	T	T	C	rs145830611		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GGA2	NM_015044	exon4	c.A260G	p.E87G	CACATCTCCAGCA	.	39	4	79	0	T|1.000;C|0.000	91	C	23504772	T	C	23504772	3	2	55	1	0	0	0	0	1	0	0	0	6353	1551	54	2	1637	2	GGA2	16	23504772	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	8401217	23504772	66849981	124	8099											
C16orf82	162083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27078698	27078698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_001145545	exon1	c.G382T	p.G128C	CAGCTGGGCTCCA	.	35	14	36	0	.	.	T	27078698	G	T	27078698	3	4	55	1	0	0	0	0	1	0	0	0	1838	1232	43	3	384	3	C16orf82	16	27078698	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	3573926	27078698	63276055	125	8100											
ZNF267	10308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31926035	31926035	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF267	NM_003414	exon4	c.T465G	p.S155S	TTCTTCTTGTGCC	.	209	76	215	0	.	138	G	31926035	T	G	31926035	2	3	55	1	0	0	0	0	0	0	0	1	17803	1596	56	5		5	ZNF267	16	31926035	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	4847337	31926035	58428718	126	8101											
CMTM2	146225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66613710	66613710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CMTM2	NM_001199317	exon1	c.G200T	p.G67V	GGAGGGGGTGTCG	.	95	41	111	0	.	91	T	66613710	G	T	66613710	3	4	55	1	0	0	0	0	1	0	0	0	3583	1232	43	3	202	3	CMTM2	16	66613710	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	34687675	66613710	23741043	127	8102											
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	67572365	67572365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FAM65A	NM_001193523	exon2	c.G76A	p.V26M	CTGTCGGTGCGGC	.	128	59	156	0	.	92	A	67572365	G	A	67572365	3	1	55	1	0	0	0	0	1	0	0	0	5599	1261	44	3	18	3	FAM65A	16	67572365	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	958655	67572365	22782388	128	8103											
HPR	3250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72110626	72110626	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HPR	NM_020995	exon5	c.C693T	p.N231N	TGACAACTTTAAA	.	148	70	229	0	.	515	T	72110626	C	T	72110626	2	4	55	1	0	0	0	0	0	0	0	1	7337	564	20	3		3	HPR	16	72110626	Silent	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	4538261	72110626	18244127	129	8104											
MON1B	22879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77228415	77228415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MON1B	NM_014940	exon4	c.G659A	p.R220H	TCCGCCGCCTGCT	.	94	34	111	0	.	90	A	77228415	G	A	77228415	3	1	55	1	0	0	0	0	1	0	0	0	9699	1087	38	1	669	1	MON1B	16	77228415	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	5117789	77228415	13126338	130	8105											
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84124541	84124541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MBTPS1	NM_003791	exon8	c.G970A	p.E324K	TTAATTCCCACAC	.	151	66	189	0	.	92	T	84124541	C	T	84124541	3	4	55	1	0	0	0	0	1	0	0	0	9361	864	30	3	2252	3	MBTPS1	16	84124541	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	6896126	84124541	6230212	131	8106											
RABEP1	9135	ucsc.edu;bcgsc.ca	37	17	5235401	5235401	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RABEP1	NM_004703	exon3	c.A321G	p.K107K	AGTGAAAAGACAG	.	33	4	55	0	.	659	G	5235401	A	G	5235401	2	3	55	1	0	0	0	0	0	0	0	1	12961	11	1	2		2	RABEP1	17	5235401	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10		5235401	75959809	132	8107											
ZBTB4	57659	ucsc.edu;bcgsc.ca	37	17	7369945	7369945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZBTB4	NM_001128833	exon3	c.T176C	p.L59P	GTGAGCAGGGCCT	.	46	5	62	0	.	93	G	7369945	A	G	7369945	3	3	55	1	0	0	0	0	1	0	0	0	17538	188	7	2	2873	2	ZBTB4	17	7369945	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	2134544	7369945	73825265	133	8108											
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48551103	48551103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ACSF2	NM_025149	exon13	c.A1553G	p.E518G	GTGGTGAGAACAT	.	96	40	109	0	.	68	G	48551103	A	G	48551103	3	3	55	1	0	0	0	0	1	0	0	0	175	304	11	2	1603	2	ACSF2	17	48551103	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	41181158	48551103	32644107	134	8109											
TBX4	9496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560737	59560737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TBX4	NM_018488	exon8	c.G1498A	p.G500R	CCCCAAGGGTGTG	.	82	29	120	0	.	227	A	59560737	G	A	59560737	3	1	55	1	0	0	0	0	1	0	0	0	15657	1000	35	3	1528	3	TBX4	17	59560737	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	11009634	59560737	21634473	135	8110											
RGS9	8787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	63198195	63198195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RGS9	NM_003835	exon14	c.A1061T	p.Y354F	AGATTTACAAGTG	.	85	23	97	0	.	94	T	63198195	A	T	63198195	3	4	55	1	0	0	0	0	1	0	0	0	13313	391	14	4	1115	4	RGS9	17	63198195	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	3637458	63198195	17997015	136	8111											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	758698	758699	+	Missense_Mutation	DNP	GA	GA	TG	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	.	.	.	p.QN584HD	TGACCAGAACTCC	.	100	26	116	0	.	.	TG	758699	GA	TG	758698	3	4	55	1	0	0	0	0	1	0	0	0	1913	933	33	3	1754	3	C19orf21	19	758698	Missense_Mutation	DNP	GA	TCGA-DD-A11D-01A-11D-A12Z-10		758698	58370285	137	8112											
DUS3L	56931	ucsc.edu;bcgsc.ca	37	19	5789643	5789643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DUS3L	NM_020175	exon3	c.G475A	p.G159S	GGGGGCCCAGGTC	.	48	4	39	0	.	90	T	5789643	C	T	5789643	3	4	55	1	0	0	0	0	1	0	0	0	4807	623	22	3	1521	3	DUS3L	19	5789643	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	5030945	5789643	53339340	138	8113											
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8651042	8651042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ADAMTS10	NM_030957	exon22	c.G2624A	p.R875K	CGCTGCCTTTTGG	.	63	22	71	0	.	229	T	8651042	C	T	8651042	3	4	55	1	0	0	0	0	1	0	0	0	256	681	24	3	707	3	ADAMTS10	19	8651042	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	2861399	8651042	50477941	139	8114											
ZNF177	7730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9492041	9492041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF177	NM_001172651	exon6	c.G1034A	p.C345Y	AGGAATGTGGGAA	.	71	30	125	0	.	91	A	9492041	G	A	9492041	3	1	55	1	0	0	0	0	1	0	0	0	17743	1377	48	3	1052	3	ZNF177	19	9492041	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	840999	9492041	49636942	140	8115											
ZNF536	9745	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30934910	30934910	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF536	NM_014717	exon2	c.G441C	p.L147L	CTCCCTGCACATG	.	72	16	68	1	.	144	C	30934910	G	C	30934910	2	2	55	1	0	0	0	0	0	0	0	1	17971	1306	46	4		4	ZNF536	19	30934910	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	21442869	30934910	28194073	141	8116											
MAP3K10	4294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40704415	40704415	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAP3K10	NM_002446	exon2	c.G816A	p.P272P	GGCGCCGGAGGTT	.	63	20	111	0	.	981	A	40704415	G	A	40704415	2	1	55	1	0	0	0	0	0	0	0	1	9244	1103	39	1		1	MAP3K10	19	40704415	Silent	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	9769505	40704415	18424568	142	8117											
HIF3A	64344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46832675	46832675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	HIF3A,brain,glioma,0	HIF3A	NM_152795	exon12	c.G1652T	p.C551F	TGAGCTGCTCCAG	.	56	25	59	0	.	228	T	46832675	G	T	46832675	3	4	55	1	0	0	0	0	1	0	0	0	7105	1319	46	3	1722	3	HIF3A	19	46832675	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	6128260	46832675	12296308	143	8118											
ZNF772	400720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57987070	57987075	+	In_Frame_Del	DEL	GGTACA	GGTACA	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	GGTACA	GGTACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF772	NM_001144068	exon3	c.152_157del	p.51_53del	CATCACGGTACAG	.	188	34	328	0	.	90	-	57987075	GGTACA	-	57987070	7	5	55	1	0	1	0	1	0	0	0	0	18142	1116	39	0	1324	0	ZNF772	19	57987070	In_Frame_Del	DEL	GGTACA	TCGA-DD-A11D-01A-11D-A12Z-10	11154395	57987070	1141913	144	8119											
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58864542	58864542	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	A1BG	NM_130786	exon3	c.T92A	p.L31Q	GCCCACAGGCTGG	.	73	39	104	0	.	90	T	58864542	A	T	58864542	3	4	55	1	0	0	0	0	1	0	0	0	1	188	7	4	1419	4	A1BG	19	58864542	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	877472	58864542	264441	145	8120											
PAX1	5075	ucsc.edu;mdanderson.org	37	20	21695194	21695194	+	Missense_Mutation	SNP	C	C	G	rs17861059	byfrequency;alternate_allele	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PAX1	NM_006192	exon5	c.C1358G	p.P453R	CTCGACCTCCTAG	.	26	10	18	0	C|0.993;T|0.007	227	G	21695194	C	G	21695194	3	3	55	1	0	0	0	0	1	0	0	0	11478	681	24	4	1376	4	PAX1	20	21695194	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10		21695194	41330326	146	8121											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57829455	57829455	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF831	NM_178457	exon5	c.A4691C	p.K1564T	CTGAAAAAACTCA	.	128	45	159	0	.	126	C	57829455	A	C	57829455	3	2	55	1	0	0	0	0	1	0	0	0	18182	14	1	5	4709	5	ZNF831	20	57829455	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	36134261	57829455	5196065	147	8122											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41725559	41725559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DSCAM	NM_001271534	exon5	c.A767G	p.Y256C	CAGCGGTAATCTG	.	56	24	74	0	.	101	C	41725559	T	C	41725559	3	2	55	1	0	0	0	0	1	0	0	0	4768	1638	57	2	5387	2	DSCAM	21	41725559	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10		41725559	6404336	148	8123											
COL18A1	80781	ucsc.edu;bcgsc.ca	37	21	46917553	46917553	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	COL18A1	NM_030582	exon31	c.A3201G	p.E1067E	AGGAGAAGTGGGC	.	38	4	48	0	.	90	G	46917553	A	G	46917553	2	3	55	1	0	0	0	0	0	0	0	1	3675	69	3	2		2	COL18A1	21	46917553	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	5191994	46917553	1212342	149	8124											
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22842866	22842866	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF280B	NM_080764	exon4	c.T858C	p.S286S	AAAGTCACTAAGT	.	180	51	174	0	.	70	G	22842866	A	G	22842866	2	3	55	1	0	0	0	0	0	0	0	1	17812	156	6	2		2	ZNF280B	22	22842866	Silent	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10		22842866	28461700	150	8125											
ISX	91464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35463259	35463259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ISX	NM_001008494	exon1	c.C179T	p.A60V	GAGAAGCTGCGGC	.	101	37	83	0	.	95	T	35463259	C	T	35463259	3	4	55	1	0	0	0	0	1	0	0	0	7865	797	28	3	181	3	ISX	22	35463259	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	12620393	35463259	15841307	151	8126											
TST	7263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37414432	37414432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TST	NM_003312	exon2	c.G342T	p.W114C	GAACATCCACCAG	.	96	22	96	0	.	90	A	37414432	C	A	37414432	3	1	55	1	0	0	0	0	1	0	0	0	16670	856	30	3	559	3	TST	22	37414432	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	1951173	37414432	13890134	152	8127											
BRD1	23774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50169282	50169282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	BRD1	NM_014577	exon11	c.G2950C	p.E984Q	GCTTCTCATCAGA	.	105	28	124	1	.	91	G	50169282	C	G	50169282	3	3	55	1	0	0	0	0	1	0	0	0	1501	835	29	4	234	4	BRD1	22	50169282	Missense_Mutation	SNP	C	TCGA-DD-A11D-01A-11D-A12Z-10	12754850	50169282	1135284	153	8128											
IL1RAPL1	11141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	29973331	29973331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	IL1RAPL1	NM_014271	exon11	c.A1485T	p.R495S	AACCAGACTTCGA	.	243	91	340	0	.	134	T	29973331	A	T	29973331	3	4	55	1	0	0	0	0	1	0	0	0	7661	272	10	4	1523	4	IL1RAPL1	23	29973331	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10		29973331	125297229	154	8129											
EDA	1896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69249366	69249366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	EDA	NM_001399	exon5	c.A719T	p.K240I	CTGATAAAGCTGG	.	143	56	216	0	.	195	T	69249366	A	T	69249366	3	4	55	1	0	0	0	0	1	0	0	0	4903	14	1	4	873	4	EDA	23	69249366	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	39276035	69249366	86021194	155	8130											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71855112	71855112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PHKA1	NM_001172436	exon16	c.A1607G	p.N536S	ATCTTGTTGTCCA	.	160	70	189	0	.	134	C	71855112	T	C	71855112	3	2	55	1	0	0	0	0	1	0	0	0	11843	1725	60	2	2132	2	PHKA1	23	71855112	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	2605746	71855112	83415448	156	8131											
ATP7A	538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77243771	77243771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ATP7A	NM_000052	exon3	c.T154A	p.Y52N	ATTATTTATGACC	.	232	66	292	0	.	130	A	77243771	T	A	77243771	3	1	55	1	0	0	0	0	1	0	0	0	1190	1754	61	4	160	4	ATP7A	23	77243771	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	5388659	77243771	78026789	157	8132											
IRS4	8471	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977031	107977031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	IRS4	NM_003604	exon1	c.C2544A	p.N848K	GTCCCAGTTATAG	.	230	72	301	1	.	623	T	107977031	G	T	107977031	3	4	55	1	0	0	0	0	1	0	0	0	7842	1020	36	3	1233	3	IRS4	23	107977031	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	30733260	107977031	47293529	158	8133											
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122616686	122616686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GRIA3	NM_000828	exon15	c.G2476A	p.G826S	GTGGCAGGCGTTT	.	171	73	216	0	.	134	A	122616686	G	A	122616686	3	1	55	1	0	0	0	0	1	0	0	0	6769	1000	35	3	2653	3	GRIA3	23	122616686	Missense_Mutation	SNP	G	TCGA-DD-A11D-01A-11D-A12Z-10	14639655	122616686	32653874	159	8134											
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135080330	135080330	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SLC9A6	NM_001042537	exon3	c.T589A	p.Y197N	GCAGGTTATAGCC	.	436	164	576	0	.	131	A	135080330	T	A	135080330	3	1	55	1	0	0	0	0	1	0	0	0	14718	1754	61	4	599	4	SLC9A6	23	135080330	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	12463644	135080330	20190230	160	8135											
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	140993822	140993822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAGEC1	NM_005462	exon4	c.T632C	p.L211S	CTTTATTGAGTAT	.	780	108	998	0	.	133	C	140993822	T	C	140993822	3	2	55	1	0	0	0	0	1	0	0	0	9180	1821	63	2	638	2	MAGEC1	23	140993822	Missense_Mutation	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	5913492	140993822	14276738	161	8136											
PASD1	139135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150840760	150840760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PASD1	NM_173493	exon14	c.A1543T	p.M515L	AAGAAGATGCAGG	.	253	74	308	0	.	133	T	150840760	A	T	150840760	3	4	55	1	0	0	0	0	1	0	0	0	11471	333	12	4	1593	4	PASD1	23	150840760	Missense_Mutation	SNP	A	TCGA-DD-A11D-01A-11D-A12Z-10	9846938	150840760	4429800	162	8137											
GABRA3	2556	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	151424438	151424438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GABRA3	NM_000808	exon5	c.A363T	p.T121T	ATGCCATGTCTGC	.	139	10	191	0	.	131	A	151424438	T	A	151424438	2	1	55	1	0	0	0	0	0	0	0	1	6162	1451	51	4		4	GABRA3	23	151424438	Silent	SNP	T	TCGA-DD-A11D-01A-11D-A12Z-10	583678	151424438	3846122	163	8138											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94652058	94652058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ARHGAP29	NM_004815	exon16	c.A1777C	p.T593P	TACCAGTTTCTGA	.	108	16	146	0	.	296	G	94652058	T	G	94652058	3	3	56	1	0	0	0	0	1	0	0	0	878	1725	60	5	2040	5	ARHGAP29	1	94652058	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		94652058	154598563	1	8139											
DBT	1629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100672083	100672083	+	Missense_Mutation	SNP	C	C	T	rs150934375		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DBT	NM_001918	exon9	c.G1127A	p.R376H	TGGAGGCGGTTCA	.	84	24	87	0	C|1.000;T|0.000	91	T	100672083	C	T	100672083	3	4	56	1	0	0	0	0	1	0	0	0	4258	768	27	1	333	1	DBT	1	100672083	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	6020025	100672083	148578538	2	8140											
TTF2	8458	ucsc.edu;bcgsc.ca	37	1	117644071	117644071	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TTF2	NM_003594	exon23	c.A3414G	p.K1138K	GGCCAAACAAGTT	.	33	4	24	0	.	91	G	117644071	A	G	117644071	2	3	56	1	0	0	0	0	0	0	0	1	16716	40	2	2		2	TTF2	1	117644071	Silent	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	16971988	117644071	131606550	3	8141											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150531572	150531572	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ADAMTSL4	NM_019032	exon16	c.T2694C	p.P898P	GCCCCCTGACATG	.	90	45	71	0	.	92	C	150531572	T	C	150531572	2	2	56	1	0	0	0	0	0	0	0	1	277	1567	55	2		2	ADAMTSL4	1	150531572	Silent	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	32887501	150531572	98719049	4	8142											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152185637	152185637	+	Missense_Mutation	SNP	C	C	A	rs150101773	byfrequency;alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HRNR	NM_001009931	exon3	c.G8468T	p.S2823I	CCAGAACTTCCCC	.	551	54	358	0	C|1.000;T|0.000	93	A	152185637	C	A	152185637	3	1	56	1	0	0	0	0	1	0	0	0	7359	565	20	3	88	3	HRNR	1	152185637	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	1654065	152185637	97064984	5	8143											
FDPS	2224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155289686	155289686	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FDPS	NM_001135821	exon10	c.A1026G	p.Q342Q	TCTGCAACGGGCC	.	229	133	158	1	.	90	G	155289686	A	G	155289686	2	3	56	1	0	0	0	0	0	0	0	1	5803	40	2	2		2	FDPS	1	155289686	Silent	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	3104049	155289686	93960935	6	8144											
LY9	4063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160769681	160769681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LY9	NM_001261457	exon2	c.C263A	p.A88D	CTCTTGCTTTCGC	.	200	13	113	0	.	91	A	160769681	C	A	160769681	3	1	56	1	0	0	0	0	1	0	0	0	9101	797	28	3	269	3	LY9	1	160769681	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	5479995	160769681	88480940	7	8145											
DARS2	55157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173825830	173825830	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DARS2	NM_018122	exon16	c.G1701A	p.L567L	CCATCTGCTCCAG	.	107	8	58	0	.	90	A	173825830	G	A	173825830	2	1	56	1	0	0	0	0	0	0	0	1	4242	1306	46	3		3	DARS2	1	173825830	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	13056149	173825830	75424791	8	8146											
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	205290713	205290713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NUAK2	NM_030952	exon1	c.C44T	p.S15L	GCGGCCGAGGGAG	.	81	21	55	0	.	391	A	205290713	G	A	205290713	3	1	56	1	0	0	0	0	1	0	0	0	10713	1059	37	1	1870	1	NUAK2	1	205290713	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	31464883	205290713	43959908	9	8147											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237893654	237893654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RYR2	NM_001035	exon77	c.G10933A	p.A3645T	GATTTAGCAGTAT	.	144	17	91	0	.	158	A	237893654	G	A	237893654	3	1	56	1	0	0	0	0	1	0	0	0	13769	971	34	3	11239	3	RYR2	1	237893654	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	32602941	237893654	11356967	10	8148											
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47707967	47707993	+	In_Frame_Del	DEL	ATATCATGGAACCAGCAGCAAAGAAGT	ATATCATGGAACCAGCAGCAAAGAAGT	-	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	ATATCATGGAACCAGCAGCAAAGAAGT	ATATCATGGAACCAGCAGCAAAGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MSH2	NM_000251	exon15	c.2591_2617del	p.864_873del	GATATGATATCAT	.	151	18	184	0	.	2445	-	47707993	ATATCATGGAACCAGCAGCAAAGAAGT	-	47707967	7	5	56	1	0	1	0	1	0	0	0	0	9870	333	12	0	2649	0	MSH2	2	47707967	In_Frame_Del	DEL	ATATCATGGAACCAGCAGCAAAGAAGT	TCGA-DD-A1E9-01A-21D-A152-10		47707967	195491406	11	8149											
INO80B	83444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74683301	74683301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	INO80B	NM_031288	exon4	c.G442A	p.E148K	GAAGAGGAGGAAC	.	257	19	240	0	.	226	A	74683301	G	A	74683301	3	1	56	1	0	0	0	0	1	0	0	0	7747	1175	41	3	456	3	INO80B	2	74683301	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	26975334	74683301	168516072	12	8150											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	86691306	86691306	+	Missense_Mutation	SNP	C	C	T	rs200618359		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KDM3A	NM_001146688	exon9	c.C974T	p.S325F	CCAACTCTCCACC	.	198	59	150	0	C|0.999;T|0.000	291	T	86691306	C	T	86691306	3	4	56	1	0	0	0	0	1	0	0	0	8126	913	32	3	1004	3	KDM3A	2	86691306	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	12008005	86691306	156508067	13	8151											
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128247508	128247508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	IWS1	NM_017969	exon11	c.A2059T	p.R687W	TAGGCCTAGACCA	.	391	50	357	0	.	91	A	128247508	T	A	128247508	3	1	56	1	0	0	0	0	1	0	0	0	7931	1521	53	4	416	4	IWS1	2	128247508	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	41556202	128247508	114951865	14	8152											
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160194151	160194151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	BAZ2B	NM_013450	exon32	c.G5587C	p.E1863Q	TCCGTTCTAGTGC	.	185	28	169	0	.	94	G	160194151	C	G	160194151	3	3	56	1	0	0	0	0	1	0	0	0	1332	922	32	4	943	4	BAZ2B	2	160194151	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	31946643	160194151	83005222	15	8153											
PLCD4	84812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219501200	219501200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLCD4	NM_032726	exon16	c.G2189A	p.R730H	GTTACCGCCACAT	.	112	31	117	0	.	661	A	219501200	G	A	219501200	3	1	56	1	0	0	0	0	1	0	0	0	12033	1087	38	1	2247	1	PLCD4	2	219501200	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	59307049	219501200	23698173	16	8154											
KLHL30	377007	broad.mit.edu;bcgsc.ca	37	2	239049561	239049561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLHL30	NM_198582	exon2	c.C166T	p.P56S	AGCAGCCCCTACT	.	66	4	77	0	.	22	T	239049561	C	T	239049561	3	4	56	1	0	0	0	0	1	0	0	0	8384	623	22	3	168	3	KLHL30	2	239049561	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	19548361	239049561	4149812	17	8155											
CNTN6	27255	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	1371498	1371498	+	Missense_Mutation	SNP	G	G	A	rs142802849		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CNTN6	NM_014461	exon11	c.G1243A	p.V415I	AGTCCAGTTAAAA	.	312	80	341	1	G|1.000;A|0.000	345	A	1371498	G	A	1371498	3	1	56	1	0	0	0	0	1	0	0	0	3645	1029	36	3	1281	3	CNTN6	3	1371498	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10		1371498	196650932	18	8156											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129286593	129286593	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLXND1	NM_015103	exon21	c.G3921T	p.T1307T	CAGCAGCGTCTTC	.	35	5	64	0	.	90	A	129286593	C	A	129286593	2	1	56	1	0	0	0	0	0	0	0	1	12127	755	27	1		1	PLXND1	3	129286593	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	127915095	129286593	68735837	19	8157											
PIK3R4	30849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130447469	130447469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PIK3R4	NM_014602	exon6	c.G1645C	p.E549Q	TATTTTCAGGGTC	.	252	29	301	1	.	1471	G	130447469	C	G	130447469	3	3	56	1	0	0	0	0	1	0	0	0	11921	835	29	4	2491	4	PIK3R4	3	130447469	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	1160876	130447469	67574961	20	8158											
PDE6B	5158	broad.mit.edu;bcgsc.ca	37	4	619437	619437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PDE6B	NM_001145291	exon1	c.G22T	p.A8S	GAGCAGGCCCGGA	.	104	9	134	0	.	90	T	619437	G	T	619437	3	4	56	1	0	0	0	0	1	0	0	0	11646	1203	42	3	24	3	PDE6B	4	619437	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10		619437	190534839	21	8159											
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74283866	74283866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ALB	NM_000477	exon12	c.T1490A	p.V497D	ACAGAGTCACCAA	.	104	24	90	0	.	96	A	74283866	T	A	74283866	3	1	56	1	0	0	0	0	1	0	0	0	486	1667	58	4	1536	4	ALB	4	74283866	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	73664429	74283866	116870410	22	8160											
UGT8	7368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115597188	115597188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	UGT8	NM_003360	exon5	c.C1370T	p.A457V	ATGGAGCCCATCA	.	360	98	320	1	.	92	T	115597188	C	T	115597188	3	4	56	1	0	0	0	0	1	0	0	0	16962	739	26	3	1388	3	UGT8	4	115597188	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	41313322	115597188	75557088	23	8161											
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144107245	144107245	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP38	NM_032557	exon1	c.G642A	p.L214L	ACTACTGCCTTCC	.	126	33	124	0	.	660	A	144107245	G	A	144107245	2	1	56	1	0	0	0	0	0	0	0	1	17066	1306	46	3		3	USP38	4	144107245	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	28510057	144107245	47047031	24	8162											
GAB1	2549	broad.mit.edu;bcgsc.ca	37	4	144354861	144354861	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GAB1	NM_207123	exon3	c.A585G	p.E195E	GCCCGAACCCACC	.	115	5	102	0	.	1146	G	144354861	A	G	144354861	2	3	56	1	0	0	0	0	0	0	0	1	6148	40	2	2		2	GAB1	4	144354861	Silent	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	247616	144354861	46799415	25	8163											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149357349	149357349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NR3C2	NM_001166104	exon2	c.A664T	p.S222C	GAAAACTGCCAAA	.	68	13	60	0	.	154	A	149357349	T	A	149357349	3	1	56	1	0	0	0	0	1	0	0	0	10631	1580	55	4	2322	4	NR3C2	4	149357349	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	5002488	149357349	41796927	26	8164											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187541970	187541970	+	Missense_Mutation	SNP	C	C	T	rs189271562		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT1	NM_005245	exon10	c.G5770A	p.G1924R	TCTCCCCGATGTT	.	170	18	215	0	C|0.999;T|0.000	34	T	187541970	C	T	187541970	3	4	56	1	0	0	0	0	1	0	0	0	5689	652	23	1	8068	1	FAT1	4	187541970	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	38184621	187541970	3612306	27	8165											
AQPEP	0	broad.mit.edu;bcgsc.ca	37	5	115327955	115327955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_173800	exon5	c.C1241T	p.S414F	TTGTCTCCCACGA	.	123	6	116	0	.	.	T	115327955	C	T	115327955	3	4	56	1	0	0	0	0	1	0	0	0	834	855	30	3	1259	3	AQPEP	5	115327955	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10		115327955	65587305	28	8166											
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120021723	120021723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRR16	NM_016644	exon3	c.C165A	p.D55E	AACGGACACGCTG	.	97	24	71	0	.	71	A	120021723	C	A	120021723	3	1	56	1	0	0	0	0	1	0	0	0	12589	477	17	3	171	3	PRR16	5	120021723	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	4693768	120021723	60893537	29	8167											
ANKHD1	54882	broad.mit.edu;mdanderson.org	37	5	139876827	139876827	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ANKHD1	NM_017747	exon15	c.C2968T	p.Q990X	CCAGCTCAGACGC	.	46	11	27	0	.	185	T	139876827	C	T	139876827	4	4	56	1	0	0	0	0	0	1	0	0	628	827	29	3	3132	3	ANKHD1	5	139876827	Nonsense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	19855104	139876827	41038433	30	8168											
GFOD1	54438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13365402	13365402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GFOD1	NM_018988	exon2	c.T746C	p.V249A	ACAGTGACATCCT	.	38	10	38	0	.	92	G	13365402	A	G	13365402	3	3	56	1	0	0	0	0	1	0	0	0	6343	275	10	2	430	2	GFOD1	6	13365402	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10		13365402	157749665	31	8169											
C6orf62	81688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24714631	24714631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	C6orf62	NM_030939	exon3	c.T344G	p.L115R	GGCCAAAGAATGA	.	143	29	187	0	.	90	C	24714631	A	C	24714631	3	2	56	1	0	0	0	0	1	0	0	0	2368	72	3	5	357	5	C6orf62	6	24714631	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	11349229	24714631	146400436	32	8170											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40400289	40400289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LRFN2	NM_020737	exon2	c.C564T	p.I188I	CTCGGCGATGTGA	.	76	13	101	0	.	93	A	40400289	G	A	40400289	2	1	56	1	0	0	0	0	0	0	0	1	8938	1048	37	1		1	LRFN2	6	40400289	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	15685658	40400289	130714778	33	8171											
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7571282	7571282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	COL28A1	NM_001037763	exon3	c.A378T	p.L126F	CCCTATTAAATTC	.	168	59	106	0	.	93	A	7571282	T	A	7571282	3	1	56	1	0	0	0	0	1	0	0	0	3686	1751	61	4	3131	4	COL28A1	7	7571282	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		7571282	151567381	34	8172											
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51095517	51095517	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	COBL	NM_015198	exon10	c.G3276A	p.K1092K	TTTTTTCTTCGGC	.	346	114	397	1	.	95	T	51095517	C	T	51095517	2	4	56	1	0	0	0	0	0	0	0	1	3653	912	32	3		3	COBL	7	51095517	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	43524235	51095517	108043146	35	8173											
PCLO	27445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82595462	82595462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCLO	NM_014510	exon4	c.C3642T	p.L1214L	TTCAGGGAGTGGC	.	843	325	785	2	.	29	A	82595462	G	A	82595462	2	1	56	1	0	0	0	0	0	0	0	1	11583	1161	41	3		3	PCLO	7	82595462	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	31499945	82595462	76543201	36	8174											
PRKAG2	51422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151262925	151262925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRKAG2	NM_016203	exon12	c.A1280G	p.E427G	CCAAGCTCATCCA	.	411	150	375	2	.	658	C	151262925	T	C	151262925	3	2	56	1	0	0	0	0	1	0	0	0	12501	1551	54	2	449	2	PRKAG2	7	151262925	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	68667463	151262925	7875738	37	8175											
UBR5	51366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	103269936	103269936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	UBR5	NM_015902	exon58	c.C8111T	p.A2704V	TTCTCAGCATTTT	.	150	12	54	0	.	761	A	103269936	G	A	103269936	3	1	56	1	0	0	0	0	1	0	0	0	16902	971	34	3	296	3	UBR5	8	103269936	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10		103269936	43094086	38	8176											
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	122641077	122641077	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HAS2	NM_005328	exon2	c.G504A	p.S168S	GTGTTGCGAGCTT	.	307	174	128	0	.	236	T	122641077	C	T	122641077	2	4	56	1	0	0	0	0	0	0	0	1	6962	755	27	1		1	HAS2	8	122641077	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	19371141	122641077	23722945	39	8177											
AKR1C1	1645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	5005692	5005692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AKR1C1	NM_001353	exon1	c.T56G	p.L19R	CTGTCCTGGGATT	.	180	16	221	0	.	516	G	5005692	T	G	5005692	3	3	56	1	0	0	0	0	1	0	0	0	469	1580	55	5	58	5	AKR1C1	10	5005692	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		5005692	130529055	40	8178											
KIAA1217	56243	ucsc.edu;bcgsc.ca	37	10	24669888	24669888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KIAA1217	NM_019590	exon3	c.G445C	p.E149Q	TCTTTGGAAGCCA	.	39	6	44	0	.	98	C	24669888	G	C	24669888	3	2	56	1	0	0	0	0	1	0	0	0	8216	1175	41	4	455	4	KIAA1217	10	24669888	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	19664196	24669888	110864859	41	8179											
DCLRE1A	9937	broad.mit.edu;bcgsc.ca	37	10	115609611	115609611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DCLRE1A	NM_014881	exon2	c.T1253C	p.L418P	GCAGCAAGCTTCC	.	110	7	86	0	.	228	G	115609611	A	G	115609611	3	3	56	1	0	0	0	0	1	0	0	0	4294	72	3	2	1901	2	DCLRE1A	10	115609611	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	90939723	115609611	19925136	42	8180											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129901194	129901194	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MKI67	NM_002417	exon13	c.C8910T	p.P2970P	TCCCACGGGTTCT	.	98	26	88	0	.	519	A	129901194	G	A	129901194	2	1	56	1	0	0	0	0	0	0	0	1	9598	1103	39	1		1	MKI67	10	129901194	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	14291583	129901194	5633553	43	8181											
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	2869140	2869140	+	Silent	SNP	C	C	T	rs184844767		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KCNQ1	NM_000218	exon16	c.C1938T	p.G646G	TGGCGGCTCCGTC	.	45	9	45	0	A|0.002;C|0.998	515	T	2869140	C	T	2869140	2	4	56	1	0	0	0	0	0	0	0	1	8082	784	28	3		3	KCNQ1	11	2869140	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10		2869140	132137376	44	8182											
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6559930	6559930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DNHD1	NM_144666	exon16	c.T3215C	p.V1072A	GCCCCGTGCTGCA	.	40	4	58	0	.	24	C	6559930	T	C	6559930	3	2	56	1	0	0	0	0	1	0	0	0	4668	1696	59	2	3278	2	DNHD1	11	6559930	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	3690790	6559930	128446586	45	8183											
SSH3	54961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67077797	67077797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SSH3	NM_017857	exon13	c.G1670T	p.S557I	AGACCAGTGACAT	.	74	15	80	0	.	91	T	67077797	G	T	67077797	3	4	56	1	0	0	0	0	1	0	0	0	15185	1029	36	3	1720	3	SSH3	11	67077797	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	60517867	67077797	67928719	46	8184											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92534030	92534030	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon9	c.C7851T	p.H2617H	GGGCCACTTGGTC	.	58	12	77	0	.	73	T	92534030	C	T	92534030	2	4	56	1	0	0	0	0	0	0	0	1	5691	564	20	3		3	FAT3	11	92534030	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	25456233	92534030	42472486	47	8185											
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92613908	92613908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon22	c.A12139T	p.T4047S	CAGTGTACCTGTC	.	74	11	74	1	.	73	T	92613908	A	T	92613908	3	4	56	1	0	0	0	0	1	0	0	0	5691	391	14	4	12225	4	FAT3	11	92613908	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	79878	92613908	42392608	48	8186											
MAML2	84441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	96074699	96074699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MAML2	NM_032427	exon1	c.A361G	p.T121A	CTGCTGTTGCTGC	.	154	23	137	1	.	850	C	96074699	T	C	96074699	3	2	56	1	0	0	0	0	1	0	0	0	9206	1725	60	2	3129	2	MAML2	11	96074699	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	3460791	96074699	38931817	49	8187											
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128426289	128426289	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ETS1	NM_001143820	exon3	c.C111G	p.N37K	ACCACAGTTCATT	.	164	38	147	0	.	1270	C	128426289	G	C	128426289	3	2	56	1	0	0	0	0	1	0	0	0	5275	1020	36	4	1464	4	ETS1	11	128426289	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	32351590	128426289	6580227	50	8188											
FGF6	2251	broad.mit.edu;bcgsc.ca	37	12	4554706	4554706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FGF6	NM_020996	exon1	c.A31G	p.M11V	GGGACATAGTGAT	.	24	7	30	0	.	659	C	4554706	T	C	4554706	3	2	56	1	0	0	0	0	1	0	0	0	5856	1406	49	2	607	2	FGF6	12	4554706	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		4554706	129297189	51	8189											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6974387	6974387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP5	NM_001098536	exon19	c.G2458A	p.V820I	CACTACGTCTGCC	.	131	13	114	0	.	659	A	6974387	G	A	6974387	3	1	56	1	0	0	0	0	1	0	0	0	17078	1145	40	1	2532	1	USP5	12	6974387	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	2419681	6974387	126877508	52	8190											
PZP	5858	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9344850	9344850	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PZP	NM_002864	exon13	c.C1485A	p.I495I	AGCCATGATCTGA	.	90	7	77	0	.	157	T	9344850	G	T	9344850	2	4	56	1	0	0	0	0	0	0	0	1	12869	1280	45	3		3	PZP	12	9344850	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	2370463	9344850	124507045	53	8191											
TAS2R46	259292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11214459	11214459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.T435G	p.F145L	TATCACAAAAAGA	.	275	13	256	0	.	1	C	11214459	A	C	11214459	3	2	56	1	0	0	0	0	1	0	0	0	15579	127	5	5	498	5	TAS2R46	12	11214459	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	1869609	11214459	122637436	54	8192											
TAS2R46	259292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11214707	11214707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.G187T	p.V63L	TTAATACTAATAC	.	280	20	236	0	.	1	A	11214707	C	A	11214707	3	1	56	1	0	0	0	0	1	0	0	0	15579	565	20	3	746	3	TAS2R46	12	11214707	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	248	11214707	122637188	55	8193											
NELL2	4753	ucsc.edu;bcgsc.ca	37	12	45270410	45270410	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NELL2	NM_001145107	exon1	c.A99G	p.R33R	CGCGTGTCTTGAA	.	42	4	34	0	.	517	C	45270410	T	C	45270410	2	2	56	1	0	0	0	0	0	0	0	1	10334	1664	58	2		2	NELL2	12	45270410	Silent	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	34055703	45270410	88581485	56	8194											
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50185782	50185782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NCKAP5L	NM_001037806	exon13	c.C3845T	p.T1282M	TGGGGCGTAGGGG	.	65	19	38	0	.	68	A	50185782	G	A	50185782	3	1	56	1	0	0	0	0	1	0	0	0	10224	1145	40	1	163	1	NCKAP5L	12	50185782	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	4915372	50185782	83666113	57	8195											
NR4A1	3164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52448249	52448249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NR4A1	NM_001202233	exon3	c.C176T	p.A59V	CCGCTGCCCCCAC	.	56	7	74	0	.	186	T	52448249	C	T	52448249	3	4	56	1	0	0	0	0	1	0	0	0	10632	739	26	3	139	3	NR4A1	12	52448249	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	2262467	52448249	81403646	58	8196											
KRT86	3892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52699951	52699951	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KRT86	NM_002284	exon7	c.C1134A	p.A378A	GAAGGCCAAGCAG	.	139	34	124	1	.	91	A	52699951	C	A	52699951	2	1	56	1	0	0	0	0	0	0	0	1	8500	581	21	3		3	KRT86	12	52699951	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	251702	52699951	81151944	59	8197											
SACS	26278	broad.mit.edu;bcgsc.ca	37	13	23915816	23915816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SACS	NM_014363	exon10	c.T2199C	p.T733T	CAGCTGAGTACAT	.	80	5	67	0	.	298	G	23915816	A	G	23915816	2	3	56	1	0	0	0	0	0	0	0	1	13804	291	11	2		2	SACS	13	23915816	Silent	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10		23915816	91254062	60	8198											
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53617269	53617269	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OLFM4	NM_006418	exon4	c.G600A	p.K200K	AGAGAAGCTTGAG	.	119	13	104	0	.	69	A	53617269	G	A	53617269	2	1	56	1	0	0	0	0	0	0	0	1	10855	962	34	3		3	OLFM4	13	53617269	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	29701453	53617269	61552609	61	8199											
PLEKHH1	57475	broad.mit.edu;mdanderson.org	37	14	68038988	68038988	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLEKHH1	NM_020715	exon11	c.G1722A	p.L574L	GGGCCTGGGCGGG	.	11	4	17	0	.	22	A	68038988	G	A	68038988	2	1	56	1	0	0	0	0	0	0	0	1	12076	1335	47	3		3	PLEKHH1	14	68038988	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10		68038988	39310552	62	8200											
ATP8B4	79895	ucsc.edu;bcgsc.ca	37	15	50271815	50271815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ATP8B4	NM_024837	exon12	c.A1033G	p.S345G	CTTACCTCACATA	.	52	4	36	0	.	140	C	50271815	T	C	50271815	3	2	56	1	0	0	0	0	1	0	0	0	1197	1565	54	2	2613	2	ATP8B4	15	50271815	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		50271815	52259577	63	8201											
WHAMM	123720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83491939	83491939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001080435	exon6	c.A1358G	p.D453G	AGGATGATAAGAA	.	230	45	295	0	.	.	G	83491939	A	G	83491939	3	3	56	1	0	0	0	0	1	0	0	0	17358	333	12	2	1380	2	WHAMM	15	83491939	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	33220124	83491939	19039453	64	8202											
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	90189142	90189142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KIF7	NM_198525	exon8	c.G1904A	p.R635Q	AAGGTCCGCCTGG	.	36	5	48	0	.	523	T	90189142	C	T	90189142	3	4	56	1	0	0	0	0	1	0	0	0	8309	652	23	1	2175	1	KIF7	15	90189142	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	6697203	90189142	12342250	65	8203											
FES	2242	broad.mit.edu;mdanderson.org	37	15	91433348	91433348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FES	NM_001143784	exon8	c.T1076C	p.V359A	GGCAAGTGCTGCA	.	16	4	18	0	.	546	C	91433348	T	C	91433348	3	2	56	1	0	0	0	0	1	0	0	0	5820	1696	59	2	1106	2	FES	15	91433348	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	1244206	91433348	11098044	66	8204											
HEATR3	55027	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50134209	50134209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HEATR3	NM_182922	exon13	c.A1668C	p.R556S	GGTTAGAGTGAAT	.	67	9	64	0	.	92	C	50134209	A	C	50134209	3	2	56	1	0	0	0	0	1	0	0	0	7029	301	11	5	1718	5	HEATR3	16	50134209	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10		50134209	40220544	67	8205											
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51173341	51173341	+	Missense_Mutation	SNP	G	G	T	rs140924793	alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SALL1	NM_002968	exon2	c.C2792A	p.P931Q	TTGGACGGGGACA	.	125	5	122	0	G|1.000;A|0.000	98	T	51173341	G	T	51173341	3	4	56	1	0	0	0	0	1	0	0	0	13810	1116	39	1	1190	1	SALL1	16	51173341	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	1039132	51173341	39181412	68	8206											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1564062	1564062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRPF8	NM_006445	exon29	c.G4568T	p.R1523L	CCTGATCGCTGAG	.	128	22	112	0	.	525	A	1564062	C	A	1564062	3	1	56	1	0	0	0	0	1	0	0	0	12575	884	31	1	2499	1	PRPF8	17	1564062	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10		1564062	79631148	69	8207											
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41600227	41600227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CYP2A13	NM_000766	exon7	c.T1051C	p.Y351H	ATGCCCTACACAG	.	212	39	215	0	.	93	C	41600227	T	C	41600227	3	2	56	1	0	0	0	0	1	0	0	0	4161	1522	53	2	1077	2	CYP2A13	19	41600227	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		41600227	17528756	70	8208											
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50302171	50302171	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AP2A1	NM_130787	exon8	c.C927T	p.I309I	CGCCATCCTCTTC	.	90	17	104	0	.	92	T	50302171	C	T	50302171	2	4	56	1	0	0	0	0	0	0	0	1	739	845	30	3		3	AP2A1	19	50302171	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	8701944	50302171	8826812	71	8209	44	2									
AP2A1	160	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50302173	50302173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AP2A1	NM_130787	exon8	c.T929G	p.L310R	CCATCCTCTTCGA	.	90	16	102	0	.	92	G	50302173	T	G	50302173	3	3	56	1	0	0	0	0	1	0	0	0	739	1551	54	5	959	5	AP2A1	19	50302173	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	2	50302173	8826810	72	8210	44	2									
KLK3	354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51361569	51361569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLK3	NM_001030047	exon3	c.A491G	p.E164G	CAGAGGAGTGTAC	.	40	5	41	0	.	228	G	51361569	A	G	51361569	3	3	56	1	0	0	0	0	1	0	0	0	8405	304	11	2	505	2	KLK3	19	51361569	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10	1059396	51361569	7767414	73	8211											
KLK9	284366	broad.mit.edu;bcgsc.ca	37	19	51507094	51507094	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLK9	NM_012315	exon4	c.C469T	p.L157L	GAAACAGCGCTGT	.	87	6	76	0	.	226	A	51507094	G	A	51507094	2	1	56	1	0	0	0	0	0	0	0	1	8411	962	34	3		3	KLK9	19	51507094	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10	145525	51507094	7621889	74	8212											
SNRPB	6628	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2443295	2443295	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SNRPB	NM_003091	exon6	c.C672G	p.P224P	CCCAGGGGGAGGA	.	86	10	114	0	.	227	C	2443295	G	C	2443295	2	2	56	1	0	0	0	0	0	0	0	1	14861	1219	43	4		4	SNRPB	20	2443295	Silent	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10		2443295	60582225	75	8213											
ABHD12	26090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25287496	25287496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ABHD12	NM_001042472	exon10	c.G923C	p.S308T	ATTCCACTACTTG	.	84	11	101	1	.	91	G	25287496	C	G	25287496	3	3	56	1	0	0	0	0	1	0	0	0	76	565	20	4	351	4	ABHD12	20	25287496	Missense_Mutation	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	22844201	25287496	37738024	76	8214											
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44181869	44181869	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	WFDC8	NM_181510	exon5	c.G492A	p.E164E	TGGACACTCCTTA	.	91	9	108	0	.	90	T	44181869	C	T	44181869	2	4	56	1	0	0	0	0	0	0	0	1	17353	564	20	3		3	WFDC8	20	44181869	Silent	SNP	C	TCGA-DD-A1E9-01A-21D-A152-10	18894373	44181869	18843651	77	8215											
TRAPPC10	7109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45506772	45506772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TRAPPC10	NM_003274	exon16	c.A2470T	p.S824C	CAGCTTAGCAATG	.	90	13	86	1	.	92	T	45506772	A	T	45506772	3	4	56	1	0	0	0	0	1	0	0	0	16454	420	15	4	2532	4	TRAPPC10	21	45506772	Missense_Mutation	SNP	A	TCGA-DD-A1E9-01A-21D-A152-10		45506772	2623123	78	8216											
XRCC6	2547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42042966	42042966	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	XRCC6	NM_001469	exon7	c.T840A	p.A280A	GAAGGCTCTCAAG	.	153	47	137	0	.	661	A	42042966	T	A	42042966	2	1	56	1	0	0	0	0	0	0	0	1	17454	1538	54	4		4	XRCC6	22	42042966	Silent	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10		42042966	9261600	79	8217											
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99662112	99662112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCDH19	NM_001184880	exon1	c.C1484T	p.S495L	ACCTGCGACGGCA	.	101	47	94	0	.	110	A	99662112	G	A	99662112	3	1	56	1	0	0	0	0	1	0	0	0	11514	1059	37	1	1986	1	PCDH19	23	99662112	Missense_Mutation	SNP	G	TCGA-DD-A1E9-01A-21D-A152-10		99662112	55608448	80	8218											
MMGT1	93380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135049605	135049605	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MMGT1	NM_173470	exon3	c.A180C	p.I60I	ATGAACTATACCG	.	220	106	193	0	.	130	G	135049605	T	G	135049605	2	3	56	1	0	0	0	0	0	0	0	1	9647	1512	53	5		5	MMGT1	23	135049605	Silent	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	35387493	135049605	20220955	81	8219	45	2									
MMGT1	93380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135049612	135049612	+	Missense_Mutation	SNP	T	T	C	rs199809391		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MMGT1	NM_173470	exon3	c.A173G	p.Y58C	ATACCGTAACAGG	.	210	102	181	0	.	130	C	135049612	T	C	135049612	3	2	56	1	0	0	0	0	1	0	0	0	9647	1638	57	2	230	2	MMGT1	23	135049612	Missense_Mutation	SNP	T	TCGA-DD-A1E9-01A-21D-A152-10	7	135049612	20220948	82	8220	45	2									
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	9305494	9305494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	H6PD	NM_004285	exon2	c.G501A	p.W167X	CGCCTGGCTGCGG	.	42	20	30	0	.	90	A	9305494	G	A	9305494	4	1	57	1	0	0	0	0	0	1	0	0	6936	1212	42	3	503	3	H6PD	1	9305494	Nonsense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10		9305494	239945127	1	8221											
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9795606	9795606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CLSTN1	NM_001009566	exon13	c.C1802A	p.A601D	TGCATGGCCTTAT	.	215	92	98	0	.	523	T	9795606	G	T	9795606	3	4	57	1	0	0	0	0	1	0	0	0	3561	1203	42	3	1171	3	CLSTN1	1	9795606	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	490112	9795606	239455015	2	8222											
MAST2	23139	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46488584	46488584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MAST2	NM_015112	exon13	c.A1426G	p.M476V	CCAGAAATGGCCC	.	337	143	121	1	.	581	G	46488584	A	G	46488584	3	3	57	1	0	0	0	0	1	0	0	0	9325	101	4	2	1476	2	MAST2	1	46488584	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	36692978	46488584	202762037	3	8223											
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67861669	67861669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IL12RB2	NM_001559	exon16	c.T2486C	p.L829P	TCTCCCTTTCTGT	.	335	124	130	0	.	92	C	67861669	T	C	67861669	3	2	57	1	0	0	0	0	1	0	0	0	7627	1609	56	2	2544	2	IL12RB2	1	67861669	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	21373085	67861669	181388952	4	8224											
AMY2A	279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	104160673	104160673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AMY2A	NM_000699	exon2	c.G266C	p.G89A	GATCTGGAAATGA	.	1040	372	189	0	.	92	C	104160673	G	C	104160673	3	2	57	1	0	0	0	0	1	0	0	0	594	1174	41	4	272	4	AMY2A	1	104160673	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	36299004	104160673	145089948	5	8225											
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109270564	109270564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FNDC7	NM_001144937	exon7	c.G1246A	p.D416N	TGCAATGACACTA	.	200	91	96	0	.	92	A	109270564	G	A	109270564	3	1	57	1	0	0	0	0	1	0	0	0	5973	1290	45	3	1272	3	FNDC7	1	109270564	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	5109891	109270564	139980057	6	8226											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116933025	116933025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP1A1	NM_001160233	exon9	c.A1214C	p.N405T	CAGAGAATCAGAG	.	191	66	88	0	.	91	C	116933025	A	C	116933025	3	2	57	1	0	0	0	0	1	0	0	0	1128	101	4	5	1264	5	ATP1A1	1	116933025	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	7662461	116933025	132317596	7	8227											
PDE4DIP	9659	broad.mit.edu;bcgsc.ca	37	1	144915562	144915562	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PDE4DIP	NM_001002811	exon10	c.G2352A	p.Q784Q	CTTTCGCTGTAGA	.	532	59	136	1	.	663	T	144915562	C	T	144915562	2	4	57	1	0	0	0	0	0	0	0	1	11643	796	28	3		3	PDE4DIP	1	144915562	Silent	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	27982537	144915562	104335059	8	8228											
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155151089	155151089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TRIM46	NM_025058	exon7	c.G1285T	p.V429L	CTGCGAGGTAAGG	.	81	19	22	0	.	228	T	155151089	G	T	155151089	3	4	57	1	0	0	0	0	1	0	0	0	16518	1014	35	3	1311	3	TRIM46	1	155151089	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	10235527	155151089	94099532	9	8229											
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196309631	196309631	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	KCNT2	NM_198503	exon16	c.A1623G	p.R541R	AATGTATCGAGGA	.	199	42	70	0	.	159	C	196309631	T	C	196309631	2	2	57	1	0	0	0	0	0	0	0	1	8092	1422	50	2		2	KCNT2	1	196309631	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	41158542	196309631	52940990	10	8230											
DDX59	83479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200635118	200635118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DDX59	NM_001031725	exon2	c.T751A	p.S251T	TTCCTGAGCCAGT	.	442	102	114	0	.	155	T	200635118	A	T	200635118	3	4	57	1	0	0	0	0	1	0	0	0	4376	304	11	4	1136	4	DDX59	1	200635118	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	4325487	200635118	48615503	11	8231											
DYRK3	8444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206820946	206820946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DYRK3	NM_003582	exon3	c.G403T	p.A135S	TCCAAGGCACCCA	.	287	177	79	0	.	333	T	206820946	G	T	206820946	3	4	57	1	0	0	0	0	1	0	0	0	4857	1203	42	3	434	3	DYRK3	1	206820946	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	6185828	206820946	42429675	12	8232											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240071370	240071370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CHRM3	NM_000740	exon5	c.T619A	p.W207R	TTGTTCTGGCAAT	.	571	353	124	0	.	95	A	240071370	T	A	240071370	3	1	57	1	0	0	0	0	1	0	0	0	3378	1580	55	4	621	4	CHRM3	1	240071370	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	33250424	240071370	9179251	13	8233											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231053	21231053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	APOB	NM_000384	exon26	c.C8687T	p.P2896L	AGTTTGGGGATGT	.	232	100	110	0	.	175	A	21231053	G	A	21231053	3	1	57	1	0	0	0	0	1	0	0	0	785	1232	43	3	5020	3	APOB	2	21231053	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10		21231053	221968320	14	8234											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21245890	21245891	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	APOB	NM_000384	exon18	c.2629_2630insA	p.P877fs	CGGAGGGTTTTGC	.	137	48	79	0	.	175	T	21245891	-	T	21245890	7	5	57	1	0	1	1	0	0	0	0	0	785	1261	44	0	11110	0	APOB	2	21245890	Frame_Shift_Ins	INS	-	TCGA-DD-A1EA-01A-11D-A12Z-10	14837	21245890	221953483	15	8235											
MEIS1	4211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	66667100	66667100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MEIS1	NM_002398	exon3	c.C365A	p.A122D	ATATAGCCGTGTT	.	87	26	45	0	.	226	A	66667100	C	A	66667100	3	1	57	1	0	0	0	0	1	0	0	0	9467	739	26	3	375	3	MEIS1	2	66667100	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	45421210	66667100	176532273	16	8236											
ATP5G3	518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176044872	176044872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP5G3	NM_001190329	exon3	c.T74A	p.I25N	GCAGAAATTGGTC	.	92	35	62	1	.	91	T	176044872	A	T	176044872	3	4	57	1	0	0	0	0	1	0	0	0	1155	101	4	4	370	4	ATP5G3	2	176044872	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	109377772	176044872	67154501	17	8237											
CAB39	51719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231624746	231624746	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CAB39	NM_001130849	exon2	c.A30G	p.K10K	TCACAAATCTCCA	.	267	114	100	0	.	226	G	231624746	A	G	231624746	2	3	57	1	0	0	0	0	0	0	0	1	2525	98	4	2		2	CAB39	2	231624746	Silent	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	55579874	231624746	11574627	18	8238											
ESPNL	339768	broad.mit.edu;mdanderson.org	37	2	239009145	239009145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ESPNL	NM_194312	exon1	c.C85T	p.P29S	CTGGGCCCGGGCA	.	24	11	9	0	.	69	T	239009145	C	T	239009145	3	4	57	1	0	0	0	0	1	0	0	0	5255	623	22	3	87	3	ESPNL	2	239009145	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	7384399	239009145	4190228	19	8239											
MTMR14	64419	ucsc.edu;bcgsc.ca	37	3	9731800	9731800	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MTMR14	NM_001077526	exon17	c.G1586C	p.S529T	TGGGTAGCAGTCC	.	46	4	27	0	.	91	C	9731800	G	C	9731800	3	2	57	1	0	0	0	0	1	0	0	0	9942	971	34	4	1652	4	MTMR14	3	9731800	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10		9731800	188290630	20	8240											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10443888	10443888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP2B2	NM_001683	exon4	c.G542T	p.G181V	TGCAGGCCCCGGA	.	95	40	45	0	.	95	A	10443888	C	A	10443888	3	1	57	1	0	0	0	0	1	0	0	0	1140	739	26	3	3269	3	ATP2B2	3	10443888	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	712088	10443888	187578542	21	8241											
DAZL	1618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	16639045	16639045	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DAZL	NM_001190811	exon4	c.T306C	p.Y102Y	AAATCCATAGCTA	.	198	68	112	0	.	90	G	16639045	A	G	16639045	2	3	57	1	0	0	0	0	0	0	0	1	4246	224	8	2		2	DAZL	3	16639045	Silent	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	6195157	16639045	181383385	22	8242											
MLH1	4292	broad.mit.edu;bcgsc.ca	37	3	37048518	37048518	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MLH1	NM_000249	exon5	c.T417C	p.P139P	CCCTCCTAAACCA	.	92	5	58	0	.	2559	C	37048518	T	C	37048518	2	2	57	1	0	0	0	0	0	0	0	1	9617	1509	53	2		2	MLH1	3	37048518	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	20409473	37048518	160973912	23	8243											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266093	41266107	+	In_Frame_Del	DEL	CCTGGACTCTGGAAT	CCTGGACTCTGGAAT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CCTGGACTCTGGAAT	CCTGGACTCTGGAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	CTNNB1,NS,carcinoma,+1	CTNNB1	NM_001098209	exon3	c.90_104del	p.30_35del	GTCTTACCTGGAC	.	191	23	107	0	.	24361	-	41266107	CCTGGACTCTGGAAT	-	41266093	7	5	57	1	0	1	0	1	0	0	0	0	4016	518	18	0	96	0	CTNNB1	3	41266093	In_Frame_Del	DEL	CCTGGACTCTGGAAT	TCGA-DD-A1EA-01A-11D-A12Z-10	4217575	41266093	156756337	24	8244											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52662939	52662939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PBRM1	NM_018313	exon13	c.C1414T	p.R472X	GAACTCGCTTGTA	.	104	60	79	0	.	575	A	52662939	G	A	52662939	4	1	57	1	0	0	0	0	0	1	0	0	11491	1095	38	1	3562	1	PBRM1	3	52662939	Nonsense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	11396846	52662939	145359491	25	8245											
FLNB	2317	broad.mit.edu;bcgsc.ca	37	3	58097919	58097919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FLNB	NM_001457	exon18	c.G2619T	p.K873N	CACCAAGGGGGCT	.	118	6	66	0	.	593	T	58097919	G	T	58097919	3	4	57	1	0	0	0	0	1	0	0	0	5934	991	35	3	2689	3	FLNB	3	58097919	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	5434980	58097919	139924511	26	8246											
MCM2	4171	ucsc.edu;bcgsc.ca	37	3	127323790	127323790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MCM2	NM_004526	exon4	c.A464G	p.E155G	AGGTGGAGCGGGC	.	44	4	33	0	.	230	G	127323790	A	G	127323790	3	3	57	1	0	0	0	0	1	0	0	0	9386	304	11	2	478	2	MCM2	3	127323790	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	69225871	127323790	70698640	27	8247											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130113755	130113755	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	NM_153264	exon8	c.C3015T	p.D1005D	AGCTGACGTGATT	.	124	47	73	0	.	.	T	130113755	C	T	130113755	2	4	57	1	0	0	0	0	0	0	0	1	3702	535	19	1		1	COL6A5	3	130113755	Silent	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	2789965	130113755	67908675	28	8248											
MRPS22	56945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139062911	139062911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MRPS22	NM_020191	exon1	c.A43T	p.R15W	CTCTTGAGGAGTT	.	64	18	26	0	.	93	T	139062911	A	T	139062911	3	4	57	1	0	0	0	0	1	0	0	0	9833	295	11	4	45	4	MRPS22	3	139062911	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	8949156	139062911	58959519	29	8249											
MYNN	55892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169504351	169504351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MYNN	NM_001185118	exon9	c.A1718G	p.H573R	AGGACCATCACAT	.	297	92	125	1	.	91	G	169504351	A	G	169504351	3	3	57	1	0	0	0	0	1	0	0	0	10061	217	8	2	1744	2	MYNN	3	169504351	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	30441440	169504351	28518079	30	8250											
EIF4A2	1974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186504304	186504304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	EIF4A2	NM_001967	exon7	c.C641T	p.S214F	TGCTTTCTGCCAC	.	405	154	138	0	.	291	T	186504304	C	T	186504304	3	4	57	1	0	0	0	0	1	0	0	0	5025	913	32	3	667	3	EIF4A2	3	186504304	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	16999953	186504304	11518126	31	8251											
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194126804	194126804	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP13A3	NM_024524	exon32	c.C3525T	p.A1175A	GCCCAGGGCCCAG	.	198	79	96	0	.	69	A	194126804	G	A	194126804	2	1	57	1	0	0	0	0	0	0	0	1	1125	1219	43	3		3	ATP13A3	3	194126804	Silent	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	7622500	194126804	3895626	32	8252											
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	69962823	69962825	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	UGT2B7	NM_001074	exon1	c.585_587del	p.195_196del	CGTACCTGTTGTT	.	305	88	105	0	.	92	-	69962825	TGT	-	69962823	7	5	57	1	0	1	0	1	0	0	0	0	16959	1567	55	0	587	0	UGT2B7	4	69962823	In_Frame_Del	DEL	TGT	TCGA-DD-A1EA-01A-11D-A12Z-10		69962823	121191453	33	8253											
C4orf40	401137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71024317	71024318	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	C4orf40	NM_214711	exon3	c.348_349insT	p.R116fs	TTCAAGGTTTTTT	.	108	28	46	0	.	68	T	71024318	-	T	71024317	7	5	57	1	0	1	1	0	0	0	0	0	2269	1252	44	0	358	0	C4orf40	4	71024317	Frame_Shift_Ins	INS	-	TCGA-DD-A1EA-01A-11D-A12Z-10	1061494	71024317	120129959	34	8254											
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90170546	90170546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	GPRIN3	NM_198281	exon2	c.C716T	p.T239I	TCTCTAGTTAGAG	.	101	39	59	0	.	71	A	90170546	G	A	90170546	3	1	57	1	0	0	0	0	1	0	0	0	6731	1029	36	3	1618	3	GPRIN3	4	90170546	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	19146229	90170546	100983730	35	8255											
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107092414	107092414	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TBCK	NM_001163436	exon23	c.A2073G	p.E691E	ACAGCGTTCAATG	.	255	96	112	0	.	336	C	107092414	T	C	107092414	2	2	57	1	0	0	0	0	0	0	0	1	15633	1722	60	2		2	TBCK	4	107092414	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	16921868	107092414	84061862	36	8256											
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107845310	107845310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DKK2	NM_014421	exon4	c.G581A	p.C194Y	GCACAGCAAAACC	.	179	79	84	0	.	661	T	107845310	C	T	107845310	3	4	57	1	0	0	0	0	1	0	0	0	4545	710	25	3	202	3	DKK2	4	107845310	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	752896	107845310	83308966	37	8257											
GYPE	2996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144801632	144801632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	NM_198682	exon2	c.C68A	p.T23N	ACACCAGTGGTAC	.	1142	206	188	0	.	.	T	144801632	G	T	144801632	3	4	57	1	0	0	0	0	1	0	0	0	6911	1029	36	3	176	3	GYPE	4	144801632	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	36956322	144801632	46352644	38	8258											
NPY2R	4887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	156135578	156135578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	NPY2R	NM_000910	exon2	c.C487G	p.R163G	TCCAAGCGAATCA	.	48	19	14	0	.	523	G	156135578	C	G	156135578	3	3	57	1	0	0	0	0	1	0	0	0	10609	760	27	4	489	4	NPY2R	4	156135578	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	11333946	156135578	35018698	39	8259											
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54635850	54635850	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SKIV2L2	NM_015360	exon6	c.A528G	p.A176A	CATTGCATTGGCC	.	198	108	71	0	.	92	G	54635850	A	G	54635850	2	3	57	1	0	0	0	0	0	0	0	1	14360	204	8	2		2	SKIV2L2	5	54635850	Silent	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10		54635850	126279410	40	8260											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102203011	102203011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PAM	NM_138822	exon2	c.T124A	p.C42S	AATGAATGTCTTG	.	237	66	78	0	.	68	A	102203011	T	A	102203011	3	1	57	1	0	0	0	0	1	0	0	0	11412	1464	51	4	130	4	PAM	5	102203011	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	47567161	102203011	78712249	41	8261											
FEM1C	56929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114861063	114861063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FEM1C	NM_020177	exon3	c.T796G	p.L266V	ATTTCAAAGCCCC	.	223	64	95	0	.	155	C	114861063	A	C	114861063	3	2	57	1	0	0	0	0	1	0	0	0	5811	11	1	5	1061	5	FEM1C	5	114861063	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	12658052	114861063	66054197	42	8262											
PCDHGC5	56097	hgsc.bcm.edu;mdanderson.org	37	5	140871440	140871440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PCDHGC5	NM_032407	exon1	c.A2633T	p.D878V	TGGCCGATTAAGG	.	141	28	40	0	.	25	T	140871440	A	T	140871440	3	4	57	1	0	0	0	0	1	0	0	0	11571	333	12	4	2635	4	PCDHGC5	5	140871440	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	26010377	140871440	40043820	43	8263											
FLT4	2324	broad.mit.edu;mdanderson.org	37	5	180045886	180045886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FLT4	NM_182925	exon21	c.C2885A	p.A962D	ACCATGGCGCGGA	.	33	7	11	0	.	1490	T	180045886	G	T	180045886	3	4	57	1	0	0	0	0	1	0	0	0	5944	1203	42	3	1254	3	FLT4	5	180045886	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	39174446	180045886	869374	44	8264											
USP49	25862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	41773689	41773689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	USP49	NM_018561	exon4	c.A1033C	p.I345L	TCTGGATGAGCTC	.	34	13	15	0	.	523	G	41773689	T	G	41773689	3	3	57	1	0	0	0	0	1	0	0	0	17077	1464	51	5	905	5	USP49	6	41773689	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10		41773689	129341378	45	8265											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75884785	75884785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COL12A1	NM_004370	exon13	c.C2679A	p.D893E	GAGGGCGTCTCCA	.	170	68	75	0	.	142	T	75884785	G	T	75884785	3	4	57	1	0	0	0	0	1	0	0	0	3669	1136	40	1	6728	1	COL12A1	6	75884785	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	34111096	75884785	95230282	46	8266											
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170105298	170105298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PHF10	NM_018288	exon11	c.A1342G	p.M448V	ACATCATTTCTTC	.	160	54	81	0	.	226	C	170105298	T	C	170105298	3	2	57	1	0	0	0	0	1	0	0	0	11821	1493	52	2	162	2	PHF10	6	170105298	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	94220513	170105298	1009769	47	8267											
ZNF735	730291	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	63680468	63680468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	NM_001159524	exon4	c.C1039A	p.H347N	ATAATTCATACTG	.	31	9	22	0	.	.	A	63680468	C	A	63680468	3	1	57	1	0	0	0	0	1	0	0	0	18121	826	29	3	1053	3	ZNF735	7	63680468	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		63680468	95458195	48	8268											
SRCRB4D	136853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	76029847	76029847	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SRCRB4D	NM_080744	exon4	c.C231A	p.G77G	CCAGGAGCCACCG	.	45	18	14	0	.	91	T	76029847	G	T	76029847	2	4	57	1	0	0	0	0	0	0	0	1	15136	958	34	3		3	SRCRB4D	7	76029847	Silent	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	12349379	76029847	83108816	49	8269											
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76909777	76909777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CCDC146	NM_020879	exon14	c.A1726G	p.N576D	CACGCCAACAATG	.	126	50	92	0	.	70	G	76909777	A	G	76909777	3	3	57	1	0	0	0	0	1	0	0	0	2780	130	5	2	1776	2	CCDC146	7	76909777	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	879930	76909777	82228886	50	8270											
PEG10	23089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94293700	94293700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	PEG10,brain,glioma,-1	PEG10	NM_001172438	exon2	c.C1060T	p.R354C	GGTGCCCGCATGC	.	50	18	16	0	.	23	T	94293700	C	T	94293700	3	4	57	1	0	0	0	0	1	0	0	0	11719	652	23	1	1066	1	PEG10	7	94293700	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	17383923	94293700	64844963	51	8271											
ARMC10	83787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	102738867	102738867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ARMC10	NM_031905	exon7	c.A899G	p.Q300R	CTGTGCAGCCTAC	.	614	165	175	0	.	91	G	102738867	A	G	102738867	3	3	57	1	0	0	0	0	1	0	0	0	950	188	7	2	925	2	ARMC10	7	102738867	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	8445167	102738867	56399796	52	8272											
MLL3	58508	ucsc.edu;bcgsc.ca	37	7	151935910	151935910	+	Missense_Mutation	SNP	C	C	T	rs4024419	byfrequency	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MLL3	NM_170606	exon15	c.G2534A	p.G845E	CAAGCCCCCTAGG	.	178	36	82	0	C|0.967;T|0.033	1398	T	151935910	C	T	151935910	3	4	57	1	0	0	0	0	1	0	0	0	9622	637	22	3	12381	3	MLL3	7	151935910	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	49197043	151935910	7202753	53	8273											
TCEA1	6917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54912542	54912542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TCEA1	NM_006756	exon3	c.G195T	p.L65F	CTTTGCCAAAGAT	.	393	141	151	0	.	661	A	54912542	C	A	54912542	3	1	57	1	0	0	0	0	1	0	0	0	15664	593	21	3	742	3	TCEA1	8	54912542	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		54912542	91451480	54	8274											
CPA6	57094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68419048	68419048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CPA6	NM_020361	exon6	c.G610A	p.A204T	AAAAGGCAGGACC	.	158	60	80	1	.	92	T	68419048	C	T	68419048	3	4	57	1	0	0	0	0	1	0	0	0	3794	710	25	3	727	3	CPA6	8	68419048	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	13506506	68419048	77944974	55	8275											
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73848335	73848335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	KCNB2	NM_004770	exon3	c.C745G	p.L249V	GAGTACCTTTTGC	.	294	111	124	0	.	158	G	73848335	C	G	73848335	3	3	57	1	0	0	0	0	1	0	0	0	8013	681	24	4	751	4	KCNB2	8	73848335	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	5429287	73848335	72515687	56	8276											
IMPA1	3612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82591405	82591405	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IMPA1	NM_001144878	exon5	c.A435G	p.T145T	GATCCATGTGGGG	.	169	66	106	1	.	226	C	82591405	T	C	82591405	2	2	57	1	0	0	0	0	0	0	0	1	7722	1451	51	2		2	IMPA1	8	82591405	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	8743070	82591405	63772617	57	8277											
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105510097	105510097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	LRP12	NM_013437	exon5	c.A683G	p.K228R	TAAACTTTGGTAA	.	221	105	110	0	.	90	C	105510097	T	C	105510097	3	2	57	1	0	0	0	0	1	0	0	0	8954	1841	64	2	1908	2	LRP12	8	105510097	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	22918692	105510097	40853925	58	8278											
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409564	21409564	+	Missense_Mutation	SNP	T	T	C	rs28383787	alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IFNA8	NM_002170	exon1	c.T389C	p.I130T	GGGTGATAGAGTC	.	258	110	102	0	.	90	C	21409564	T	C	21409564	3	2	57	1	0	0	0	0	1	0	0	0	7543	1406	49	2	391	2	IFNA8	9	21409564	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10		21409564	119803867	59	8279											
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101749575	101749575	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COL15A1	NM_001855	exon4	c.649-1G>A	.	TCCCCAGGGCTCC	.	65	27	25	0	.	96	A	101749575	G	A	101749575	5	1	57	1	0	0	0	0	0	0	1	0	3672	1014	35	3	662	3	COL15A1	9	101749575	Splice_Site	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	80340011	101749575	39463856	60	8280											
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	112200499	112200499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PTPN3	NM_001145368	exon8	c.A482G	p.Y161C	GAATTATAGTCTC	.	35	11	24	0	.	229	C	112200499	T	C	112200499	3	2	57	1	0	0	0	0	1	0	0	0	12789	1406	49	2	2335	2	PTPN3	9	112200499	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	10450924	112200499	29012932	61	8281											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140880982	140880982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CACNA1B	NM_001243812	exon14	c.G1887T	p.Q629H	GATGCAGCTGTTT	.	298	110	109	0	.	138	T	140880982	G	T	140880982	3	4	57	1	0	0	0	0	1	0	0	0	2539	962	34	3	1941	3	CACNA1B	9	140880982	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	28680483	140880982	332449	62	8282											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	390969	390969	+	Missense_Mutation	SNP	C	C	A	rs200340134	alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DIP2C	NM_014974	exon27	c.G3313T	p.V1105F	TCCTGACGTCCAC	.	54	23	29	0	C|0.999;T|0.000	156	A	390969	C	A	390969	3	1	57	1	0	0	0	0	1	0	0	0	4529	536	19	1	1401	1	DIP2C	10	390969	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		390969	135143778	63	8283											
OGDHL	55753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50947868	50947868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	OGDHL	NM_018245	exon17	c.G2158T	p.A720S	CCATGGCATAGCC	.	67	29	33	0	.	69	A	50947868	C	A	50947868	3	1	57	1	0	0	0	0	1	0	0	0	10840	710	25	3	902	3	OGDHL	10	50947868	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	50556899	50947868	84586879	64	8284											
KCNJ11	3767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17409285	17409285	+	Silent	SNP	C	C	T	rs140636367	byfrequency	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	KCNJ11	NM_000525	exon1	c.G354A	p.S118S	GGCAGACGAGAAG	.	71	13	42	0	C|0.999;T|0.001	91	T	17409285	C	T	17409285	2	4	57	1	0	0	0	0	0	0	0	1	8045	523	19	1		1	KCNJ11	11	17409285	Silent	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		17409285	117597231	65	8285											
DGKZ	8525	ucsc.edu;bcgsc.ca	37	11	46397126	46397126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DGKZ	NM_001105540	exon21	c.C2419A	p.Q807K	CGCAACCAGGCCA	.	44	4	28	0	.	676	A	46397126	C	A	46397126	3	1	57	1	0	0	0	0	1	0	0	0	4474	595	21	3	2944	3	DGKZ	11	46397126	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	28987841	46397126	88609390	66	8286											
MARK2	2011	broad.mit.edu;bcgsc.ca	37	11	63665732	63665732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MARK2	NM_001163296	exon4	c.T317C	p.V106A	TGAAGGTTTTGAA	.	197	8	109	1	.	766	C	63665732	T	C	63665732	3	2	57	1	0	0	0	0	1	0	0	0	9313	1725	60	2	331	2	MARK2	11	63665732	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	17268606	63665732	71340784	67	8287											
MRPL49	740	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64889822	64889822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MRPL49	NM_004927	exon1	c.G4C	p.A2P	AAGATGGCAGCTA	.	58	18	30	1	.	90	C	64889822	G	C	64889822	3	2	57	1	0	0	0	0	1	0	0	0	9813	1203	42	4	6	4	MRPL49	11	64889822	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	1224090	64889822	70116694	68	8288											
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75508294	75508294	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DGAT2	NM_032564	exon6	c.T726G	p.A242A	TGCGGCTGAGTCT	.	101	36	40	0	.	226	G	75508294	T	G	75508294	2	3	57	1	0	0	0	0	0	0	0	1	4458	1567	55	5		5	DGAT2	11	75508294	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	10618472	75508294	59498222	69	8289											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18534747	18534747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PIK3C2G	NM_004570	exon13	c.A1805T	p.E602V	AGAGTGAGCCTCC	.	120	51	60	0	.	1312	T	18534747	A	T	18534747	3	4	57	1	0	0	0	0	1	0	0	0	11911	304	11	4	1851	4	PIK3C2G	12	18534747	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10		18534747	115317148	70	8290											
BCDIN3D	144233	ucsc.edu;bcgsc.ca	37	12	50232284	50232284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	BCDIN3D	NM_181708	exon2	c.T749C	p.F250S	TTGCCAAAGCAAC	.	48	4	36	0	.	69	G	50232284	A	G	50232284	3	3	57	1	0	0	0	0	1	0	0	0	1357	14	1	2	133	2	BCDIN3D	12	50232284	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	31697537	50232284	83619611	71	8291											
MMP19	4327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56231749	56231750	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MMP19	NM_002429	exon7	c.937_938del	p.313_313del	ACAGTCCACACAT	.	84	33	53	0	.	227	-	56231750	CA	-	56231749	7	5	57	1	0	1	0	1	0	0	0	0	9657	595	21	0	600	0	MMP19	12	56231749	Frame_Shift_Del	DEL	CA	TCGA-DD-A1EA-01A-11D-A12Z-10	5999465	56231749	77620146	72	8292											
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	116429410	116429410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MED13L	NM_015335	exon17	c.G3349A	p.D1117N	CGGAATCGGAGAG	.	128	48	57	0	.	232	T	116429410	C	T	116429410	3	4	57	1	0	0	0	0	1	0	0	0	9431	884	31	1	3343	1	MED13L	12	116429410	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	60197661	116429410	17422485	73	8293											
RFXAP	5994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37399580	37399580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	RFXAP	NM_000538	exon2	c.A616G	p.I206V	GATAACATACTCT	.	72	19	35	0	.	91	G	37399580	A	G	37399580	3	3	57	1	0	0	0	0	1	0	0	0	13270	217	8	2	622	2	RFXAP	13	37399580	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10		37399580	77770298	74	8294											
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	42877120	42877120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AKAP11	NM_016248	exon8	c.C4238A	p.S1413X	TGTTTTCAAACAA	.	56	17	54	0	.	227	A	42877120	C	A	42877120	4	1	57	1	0	0	0	0	0	1	0	0	447	838	29	3	4260	3	AKAP11	13	42877120	Nonsense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10	5477540	42877120	72292758	75	8295											
COG3	83548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	46077408	46077408	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COG3	NM_031431	exon14	c.1518delG	p.Q506fs	TGAACAGAAGAAG	.	118	16	80	0	.	154	-	46077408	G	-	46077408	7	5	57	1	0	1	0	1	0	0	0	0	3659	933	33	0	1572	0	COG3	13	46077408	Frame_Shift_Del	DEL	G	TCGA-DD-A1EA-01A-11D-A12Z-10	3200288	46077408	69092470	76	8296											
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454266	84454266	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SLITRK1	NM_052910	exon1	c.C1377T	p.I459I	GAGCTGGATAGCG	.	153	51	65	0	.	94	A	84454266	G	A	84454266	2	1	57	1	0	0	0	0	0	0	0	1	14742	1164	41	3		3	SLITRK1	13	84454266	Silent	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	38376858	84454266	30715612	77	8297											
DHRS4	10901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24435604	24435604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DHRS4	NM_021004	exon6	c.T644G	p.I215S	GACTTATCAAGAC	.	1264	258	182	0	.	91	G	24435604	T	G	24435604	3	3	57	1	0	0	0	0	1	0	0	0	4492	1435	50	5	666	5	DHRS4	14	24435604	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10		24435604	82913936	78	8298											
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	29237348	29237348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FOXG1	NM_005249	exon1	c.G863A	p.R288H	TCAAGCGCGGTGC	.	37	16	9	0	.	660	A	29237348	G	A	29237348	3	1	57	1	0	0	0	0	1	0	0	0	6007	1087	38	1	865	1	FOXG1	14	29237348	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	4801744	29237348	78112192	79	8299											
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59820665	59820665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DAAM1	NM_014992	exon19	c.T2369A	p.V790E	CAGAAGTGAAACC	.	112	46	69	0	.	227	A	59820665	T	A	59820665	3	1	57	1	0	0	0	0	1	0	0	0	4215	1696	59	4	2443	4	DAAM1	14	59820665	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	30583317	59820665	47528875	80	8300											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68274238	68274238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ZFYVE26	NM_015346	exon5	c.C763T	p.R255W	CCTCCCGCAGGGG	.	64	21	38	0	.	162	A	68274238	G	A	68274238	3	1	57	1	0	0	0	0	1	0	0	0	17665	1086	38	1	7008	1	ZFYVE26	14	68274238	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	8453573	68274238	39075302	81	8301											
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72190408	72190408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SIPA1L1	NM_015556	exon16	c.G4316A	p.S1439N	TCACCAGTGCCCG	.	124	41	68	0	.	156	A	72190408	G	A	72190408	3	1	57	1	0	0	0	0	1	0	0	0	14329	1029	36	3	4374	3	SIPA1L1	14	72190408	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	3916170	72190408	35159132	82	8302											
DPF3	8110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73159816	73159816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DPF3	NM_012074	exon7	c.C710T	p.S237F	GGTGGGGACCGAG	.	462	175	159	0	.	1	A	73159816	G	A	73159816	3	1	57	1	0	0	0	0	1	0	0	0	4718	1174	41	3	375	3	DPF3	14	73159816	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	969408	73159816	34189724	83	8303											
PROX2	283571	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	75330524	75330524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PROX2	NM_001080408	exon1	c.C14A	p.S5Y	AAGATGGAGTTTG	.	21	9	10	0	.	69	T	75330524	G	T	75330524	3	4	57	1	0	0	0	0	1	0	0	0	12561	1174	41	3	1780	3	PROX2	14	75330524	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	2170708	75330524	32019016	84	8304											
RPS6KL1	83694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	75376302	75376303	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	RPS6KL1	NM_031464	exon7	c.1214_1215insG	p.E405fs	CCCTGCTCGTGCA	.	81	32	35	0	.	359	C	75376303	-	C	75376302	7	5	57	1	0	1	1	0	0	0	0	0	13659	1551	54	0	528	0	RPS6KL1	14	75376302	Frame_Shift_Ins	INS	-	TCGA-DD-A1EA-01A-11D-A12Z-10	45778	75376302	31973238	85	8305											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28446674	28446674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	HERC2	NM_004667	exon48	c.C7644G	p.S2548R	CGTCTGGCTCTCC	.	378	146	135	0	.	234	C	28446674	G	C	28446674	3	2	57	1	0	0	0	0	1	0	0	0	7058	1194	42	4	7044	4	HERC2	15	28446674	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10		28446674	74084718	86	8306											
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35198872	35198872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AQR	NM_014691	exon18	c.C1705A	p.P569T	TTGTGGGACGTAC	.	100	39	58	0	.	135	T	35198872	G	T	35198872	3	4	57	1	0	0	0	0	1	0	0	0	835	1174	41	3	2824	3	AQR	15	35198872	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	6752198	35198872	67332520	87	8307											
SPTBN5	51332	ucsc.edu;bcgsc.ca	37	15	42154364	42154364	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SPTBN5	NM_016642	exon44	c.A7407G	p.E2469E	CCGGGCTTCCACA	.	63	5	35	0	.	91	C	42154364	T	C	42154364	2	2	57	1	0	0	0	0	0	0	0	1	15121	1606	56	2		2	SPTBN5	15	42154364	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	6955492	42154364	60377028	88	8308											
MAPK8IP3	23162	ucsc.edu;bcgsc.ca	37	16	1816752	1816752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MAPK8IP3	NM_015133	exon24	c.T2965C	p.W989R	GCCAACTGGAAGA	.	48	6	27	0	.	1109	C	1816752	T	C	1816752	3	2	57	1	0	0	0	0	1	0	0	0	9286	1580	55	2	3075	2	MAPK8IP3	16	1816752	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10		1816752	88538001	89	8309											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3778620	3778620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CREBBP	NM_004380	exon31	c.A6428G	p.N2143S	ATGGCATTCAGGT	.	63	18	23	0	.	1807	C	3778620	T	C	3778620	3	2	57	1	0	0	0	0	1	0	0	0	3861	1493	52	2	904	2	CREBBP	16	3778620	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	1961868	3778620	86576133	90	8310											
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23489767	23489767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	GGA2	NM_015044	exon13	c.C1214T	p.P405L	CCGCCTGGCAGCG	.	101	44	58	0	.	91	A	23489767	G	A	23489767	3	1	57	1	0	0	0	0	1	0	0	0	6353	1348	47	3	647	3	GGA2	16	23489767	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	19711147	23489767	66864986	91	8311											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27460101	27460101	+	Missense_Mutation	SNP	G	G	T	rs36031126	alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IL21R	NM_181079	exon10	c.G1180T	p.G394C	CCATACGGCCTGG	.	56	19	19	0	G|0.986;A|0.014	660	T	27460101	G	T	27460101	3	4	57	1	0	0	0	0	1	0	0	0	7671	1116	39	1	1144	1	IL21R	16	27460101	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	3970334	27460101	62894652	92	8312											
SIAH1	6477	hgsc.bcm.edu;broad.mit.edu	37	16	48395633	48395644	+	In_Frame_Del	DEL	CAAGTCAATCGT	CAAGTCAATCGT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CAAGTCAATCGT	CAAGTCAATCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SIAH1	NM_001006610	exon2	c.789_800del	p.263_267del	GCTTCCCAAGTCA	.	163	12	71	0	.	415	-	48395644	CAAGTCAATCGT	-	48395633	7	5	57	1	0	1	0	1	0	0	0	0	14299	595	21	0	145	0	SIAH1	16	48395633	In_Frame_Del	DEL	CAAGTCAATCGT	TCGA-DD-A1EA-01A-11D-A12Z-10	20935532	48395633	41959120	93	8313											
PHLPP2	23035	ucsc.edu;bcgsc.ca	37	16	71703179	71703179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PHLPP2	NM_015020	exon10	c.A1627G	p.R543G	CATACCTCACGGG	.	35	4	33	0	.	91	C	71703179	T	C	71703179	3	2	57	1	0	0	0	0	1	0	0	0	11855	1565	54	2	2380	2	PHLPP2	16	71703179	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	23307546	71703179	18651574	94	8314											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89349770	89349770	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ANKRD11	NM_001256183	exon9	c.A3180G	p.K1060K	GGTATCTTTTTTC	.	277	115	124	0	.	139	C	89349770	T	C	89349770	2	2	57	1	0	0	0	0	0	0	0	1	639	1606	56	2		2	ANKRD11	16	89349770	Silent	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	17646591	89349770	1004983	95	8315											
TRPV3	162514	ucsc.edu;bcgsc.ca	37	17	3427525	3427525	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TRPV3	NM_001258205	exon13	c.G1710A	p.Q570Q	CATGGACTGGAAA	.	40	5	28	0	.	94	T	3427525	C	T	3427525	2	4	57	1	0	0	0	0	0	0	0	1	16594	564	20	3		3	TRPV3	17	3427525	Silent	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		3427525	77767685	96	8316											
NUP88	4927	ucsc.edu;bcgsc.ca	37	17	5319994	5319994	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	NUP88	NM_002532	exon2	c.T306C	p.L102L	TATGCAAAGCAAT	.	43	4	59	0	.	204	G	5319994	A	G	5319994	2	3	57	1	0	0	0	0	0	0	0	1	10771	1	1	2		2	NUP88	17	5319994	Silent	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	1892469	5319994	75875216	97	8317											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60088347	60088347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MED13	NM_005121	exon9	c.A1531G	p.I511V	TTCGGATATTTGA	.	539	148	155	0	.	136	C	60088347	T	C	60088347	3	2	57	1	0	0	0	0	1	0	0	0	9430	1406	49	2	5081	2	MED13	17	60088347	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	54768353	60088347	21106863	98	8318											
TYMS	7298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	671451	671451	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TYMS	NM_001071	exon6	c.G804A	p.Q268Q	AATTCAGGTAAGA	.	151	57	72	0	.	227	A	671451	G	A	671451	2	1	57	1	0	0	0	0	0	0	0	1	16809	1014	35	3		3	TYMS	18	671451	Silent	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10		671451	77405797	99	8319											
VPS4B	9525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61067824	61067824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	VPS4B	NM_004869	exon6	c.A597G	p.I199M	GGAAGATATTGAA	.	211	88	99	0	.	91	C	61067824	T	C	61067824	3	2	57	1	0	0	0	0	1	0	0	0	17210	1396	49	2	761	2	VPS4B	18	61067824	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	60396373	61067824	17009424	100	8320											
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3910853	3910853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATCAY	NM_033064	exon8	c.C832T	p.R278W	TTCATTCGGACTG	.	137	63	64	0	.	67	T	3910853	C	T	3910853	3	4	57	1	0	0	0	0	1	0	0	0	1077	875	31	1	858	1	ATCAY	19	3910853	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		3910853	55218130	101	8321											
ICAM5	7087	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10404754	10404754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ICAM5	NM_003259	exon8	c.T1750C	p.W584R	AGCAATTGGACAT	.	83	23	42	1	.	153	C	10404754	T	C	10404754	3	2	57	1	0	0	0	0	1	0	0	0	7483	1812	63	2	1780	2	ICAM5	19	10404754	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	6493901	10404754	48724229	102	8322											
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11888443	11888443	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ZNF441	NM_152355	exon2	c.G21A	p.E7E	ATTTGAGGATGTG	.	223	78	104	0	.	69	A	11888443	G	A	11888443	2	1	57	1	0	0	0	0	0	0	0	1	17911	991	35	3		3	ZNF441	19	11888443	Silent	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	1483689	11888443	47240540	103	8323											
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50314913	50314913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FUZ	NM_025129	exon4	c.T362C	p.V121A	CTCTCCACGTTGC	.	195	73	102	0	.	90	G	50314913	A	G	50314913	3	3	57	1	0	0	0	0	1	0	0	0	6112	159	6	2	926	2	FUZ	19	50314913	Missense_Mutation	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10	38426470	50314913	8814070	104	8324											
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58565348	58565348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ZSCAN1	NM_182572	exon6	c.G1156A	p.G386R	GTCTGCGGGAAGG	.	43	10	31	0	.	92	A	58565348	G	A	58565348	3	1	57	1	0	0	0	0	1	0	0	0	18223	1116	39	1	1170	1	ZSCAN1	19	58565348	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	8250435	58565348	563635	105	8325											
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9319627	9319627	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PLCB4	NM_182797	exon5	c.A312C	p.T104T	TGGCACAGATCTA	.	126	42	60	2	.	274	C	9319627	A	C	9319627	2	2	57	1	0	0	0	0	0	0	0	1	12030	175	7	5		5	PLCB4	20	9319627	Silent	SNP	A	TCGA-DD-A1EA-01A-11D-A12Z-10		9319627	53705893	106	8326											
SYNGR1	9145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39777778	39777778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SYNGR1	NM_004711	exon4	c.C561A	p.D187E	CATGGACCCCAGC	.	97	36	27	0	.	90	A	39777778	C	A	39777778	3	1	57	1	0	0	0	0	1	0	0	0	15445	506	18	3	778	3	SYNGR1	22	39777778	Missense_Mutation	SNP	C	TCGA-DD-A1EA-01A-11D-A12Z-10		39777778	11526788	107	8327											
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21545015	21545015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CNKSR2	NM_001168647	exon10	c.G988A	p.V330I	AGCAGCGTTGCCA	.	177	163	60	0	.	625	A	21545015	G	A	21545015	3	1	57	1	0	0	0	0	1	0	0	0	3607	1145	40	1	1026	1	CNKSR2	23	21545015	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10		21545015	133725545	108	8328											
TAF7L	54457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100547906	100547906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TAF7L	NM_024885	exon1	c.A128T	p.Y43F	CTTTCATAGGTGG	.	236	213	69	0	.	130	A	100547906	T	A	100547906	3	1	57	1	0	0	0	0	1	0	0	0	15530	1406	49	4	1312	4	TAF7L	23	100547906	Missense_Mutation	SNP	T	TCGA-DD-A1EA-01A-11D-A12Z-10	79002891	100547906	54722654	109	8329											
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	107976586	107976586	+	Missense_Mutation	SNP	G	G	A	rs189095515		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IRS4	NM_003604	exon1	c.C2989T	p.L997F	GAGGAAGTGGCCA	.	112	103	35	0	G|0.999;A|0.001	623	A	107976586	G	A	107976586	3	1	57	1	0	0	0	0	1	0	0	0	7842	1029	36	3	788	3	IRS4	23	107976586	Missense_Mutation	SNP	G	TCGA-DD-A1EA-01A-11D-A12Z-10	7428680	107976586	47293974	110	8330											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22016544	22016544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	USP48	NM_032236	exon24	c.G2932A	p.D978N	TTCCATCAATTGA	.	301	107	96	0	.	659	T	22016544	C	T	22016544	3	4	58	1	0	0	0	0	1	0	0	0	17076	826	29	3	191	3	USP48	1	22016544	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		22016544	227234077	1	8331											
RPS6KA1	6195	ucsc.edu;bcgsc.ca	37	1	26898357	26898357	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA1	NM_001006665	exon18	c.C1797T	p.G599G	CCAGGGCTACGAT	.	44	4	27	0	.	510	T	26898357	C	T	26898357	2	4	58	1	0	0	0	0	0	0	0	1	13650	784	28	3		3	RPS6KA1	1	26898357	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	4881813	26898357	222352264	2	8332											
PARS2	25973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55223846	55223846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARS2	NM_152268	exon2	c.G989A	p.G330D	GGTTTGCCACAGA	.	165	66	54	0	.	92	T	55223846	C	T	55223846	3	4	58	1	0	0	0	0	1	0	0	0	11467	739	26	3	442	3	PARS2	1	55223846	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	28325489	55223846	194026775	3	8333											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144852472	144852472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4DIP	NM_014644	exon44	c.A7027G	p.T2343A	CTGGAGTACATGG	.	180	36	63	0	.	663	C	144852472	T	C	144852472	3	2	58	1	0	0	0	0	1	0	0	0	11643	1638	57	2	17	2	PDE4DIP	1	144852472	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	89628626	144852472	104398149	4	8334											
SEC22B	9554	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145109670	145109670	+	RNA	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	CCTATTCCTTTAT	.	887	65	146	0	.	.	A	145109670	C	A	145109670	1	1	58	0	1	0	0	0	0	0	0	0	13989	855	30	3		3	SEC22B	1	145109670	RNA	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	257198	145109670	104140951	5	8335											
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145528004	145528004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITGA10	NM_003637	exon3	c.G241C	p.A81P	GGGGGGGCCCACA	.	253	146	50	0	.	231	C	145528004	G	C	145528004	3	2	58	1	0	0	0	0	1	0	0	0	7873	1203	42	4	251	4	ITGA10	1	145528004	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	418334	145528004	103722617	6	8336											
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	146714372	146714372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHD1L	NM_004284	exon1	c.A19G	p.T7A	GGCGCTACTAGCC	.	37	14	9	0	.	231	G	146714372	A	G	146714372	3	3	58	1	0	0	0	0	1	0	0	0	3324	391	14	2	21	2	CHD1L	1	146714372	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	1186368	146714372	102536249	7	8337											
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155899509	155899509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0907	NM_014949	exon3	c.A378C	p.Q126H	CTCGTCTTGAGTC	.	219	68	59	0	.	90	G	155899509	T	G	155899509	3	3	58	1	0	0	0	0	1	0	0	0	8199	1606	56	5	1514	5	KIAA0907	1	155899509	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	9185137	155899509	93351112	8	8338											
ARHGEF2	9181	broad.mit.edu;mdanderson.org	37	1	155931469	155931469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF2	NM_001162383	exon11	c.C1451A	p.A484E	CCCGTCGCTGTCT	.	37	6	11	0	.	228	T	155931469	G	T	155931469	3	4	58	1	0	0	0	0	1	0	0	0	903	1087	38	1	1557	1	ARHGEF2	1	155931469	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	31960	155931469	93319152	9	8339											
SSR2	6746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155988138	155988138	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SSR2	NM_003145	exon3	c.A177G	p.L59L	ATCAGATAGTTCC	.	94	33	30	0	.	90	C	155988138	T	C	155988138	2	2	58	1	0	0	0	0	0	0	0	1	15190	1393	49	2		2	SSR2	1	155988138	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	56669	155988138	93262483	10	8340											
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156640645	156640645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NES	NM_006617	exon4	c.G3335T	p.G1112V	AGATGGCCTGGGT	.	141	43	37	0	.	520	A	156640645	C	A	156640645	3	1	58	1	0	0	0	0	1	0	0	0	10337	739	26	3	1534	3	NES	1	156640645	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	652507	156640645	92609976	11	8341											
OR10R2	343406	broad.mit.edu;mdanderson.org	37	1	158450632	158450632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10R2	NM_001004472	exon1	c.G965T	p.R322I	CTATCAGAAAAGT	.	100	24	48	0	.	161	T	158450632	G	T	158450632	3	4	58	1	0	0	0	0	1	0	0	0	10917	942	33	3	967	3	OR10R2	1	158450632	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	1809987	158450632	90799989	12	8342											
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162731029	162731029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDR2	NM_001014796	exon10	c.G884T	p.G295V	CTAAAGGTGTGAA	.	307	71	83	0	.	1464	T	162731029	G	T	162731029	3	4	58	1	0	0	0	0	1	0	0	0	4337	1261	44	3	910	3	DDR2	1	162731029	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	4280397	162731029	86519592	13	8343											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164768965	164768965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PBX1	NM_001204963	exon4	c.G540T	p.M180I	CGTGATGAATCTC	.	211	68	56	0	.	659	T	164768965	G	T	164768965	3	4	58	1	0	0	0	0	1	0	0	0	11492	1290	45	3	554	3	PBX1	1	164768965	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	2037936	164768965	84481656	14	8344											
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166974345	166974345	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAEL	NM_032858	exon7	c.G681A	p.L227L	GTGTTTGAAGCAT	.	398	104	113	0	.	91	A	166974345	G	A	166974345	2	1	58	1	0	0	0	0	0	0	0	1	9154	1281	45	3		3	MAEL	1	166974345	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	2205380	166974345	82276276	15	8345											
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183106886	183106886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LAMC1	NM_002293	exon26	c.A4397G	p.K1466R	TGTTGAAGCAACT	.	524	149	129	1	.	252	G	183106886	A	G	183106886	3	3	58	1	0	0	0	0	1	0	0	0	8614	72	3	2	4499	2	LAMC1	1	183106886	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	16132541	183106886	66143735	16	8346											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185950141	185950141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HMCN1	NM_031935	exon17	c.T2598G	p.I866M	CTATATTTGTGAA	.	204	51	64	0	.	113	G	185950141	T	G	185950141	3	3	58	1	0	0	0	0	1	0	0	0	7220	1829	64	5	2664	5	HMCN1	1	185950141	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	2843255	185950141	63300480	17	8347											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204408086	204408086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIK3C2B	NM_002646	exon24	c.C3493G	p.P1165A	CCCCAGGGTTGTG	.	111	22	43	0	.	1310	C	204408086	G	C	204408086	3	2	58	1	0	0	0	0	1	0	0	0	11910	1232	43	4	1455	4	PIK3C2B	1	204408086	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	18457945	204408086	44842535	18	8348											
DSTYK	25778	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	205180511	205180511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSTYK	NM_199462	exon1	c.C153T	p.F51F	GCGGAAGAACTTC	.	30	12	8	0	.	333	A	205180511	G	A	205180511	2	1	58	1	0	0	0	0	0	0	0	1	4785	933	33	3		3	DSTYK	1	205180511	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	772425	205180511	44070110	19	8349											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237580423	237580423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon11	c.C848T	p.A283V	GAGTTGCGTAAGT	.	177	68	57	0	.	158	T	237580423	C	T	237580423	3	4	58	1	0	0	0	0	1	0	0	0	13769	782	27	1	890	1	RYR2	1	237580423	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	32399912	237580423	11670198	20	8350											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237972285	237972285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon100	c.A14383G	p.K4795E	TACAATAAAAGTG	.	308	133	101	0	.	158	G	237972285	A	G	237972285	3	3	58	1	0	0	0	0	1	0	0	0	13769	363	13	2	14781	2	RYR2	1	237972285	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	391862	237972285	11278336	21	8351											
PREB	10113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27355507	27355507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREB	NM_013388	exon5	c.C716T	p.T239I	GAAAAGGTGGGTC	.	191	61	62	0	.	91	A	27355507	G	A	27355507	3	1	58	1	0	0	0	0	1	0	0	0	12470	1261	44	3	557	3	PREB	2	27355507	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		27355507	215843866	22	8352											
RBKS	64080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28065967	28065967	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RBKS	NM_022128	exon5	c.T481C	p.L161L	CTTCCAAAGAAGT	.	151	44	56	0	.	92	G	28065967	A	G	28065967	2	3	58	1	0	0	0	0	0	0	0	1	13108	11	1	2		2	RBKS	2	28065967	Silent	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	710460	28065967	215133406	23	8353											
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101554302	101554302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NPAS2	NM_002518	exon5	c.361delC	p.P121fs	CATTTACCGGTGA	.	222	97	72	0	.	94	-	101554302	C	-	101554302	7	5	58	1	0	1	0	1	0	0	0	0	10563	507	18	0	375	0	NPAS2	2	101554302	Frame_Shift_Del	DEL	C	TCGA-DD-A1EB-01A-11D-A12Z-10	73488335	101554302	141645071	24	8354											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179475909	179475909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTN	NM_001267550	exon270	c.G50947C	p.V16983L	TTGGAACTGGGAC	.	151	77	64	0	.	636	G	179475909	C	G	179475909	3	3	58	1	0	0	0	0	1	0	0	0	16732	565	20	4	57118	4	TTN	2	179475909	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	77921607	179475909	63723464	25	8355											
NGEF	25791	ucsc.edu;bcgsc.ca	37	2	233745877	233745877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NGEF	NM_019850	exon14	c.A1921G	p.I641V	CCAGGATGTTGAG	.	46	4	33	0	.	313	C	233745877	T	C	233745877	3	2	58	1	0	0	0	0	1	0	0	0	10394	1464	51	2	219	2	NGEF	2	233745877	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	54269968	233745877	9453496	26	8356											
EOMES	8320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27758974	27758974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EOMES	NM_005442	exon6	c.A1648T	p.I550F	ATTTAATGCCATA	.	187	67	66	0	.	156	A	27758974	T	A	27758974	3	1	58	1	0	0	0	0	1	0	0	0	5147	1464	51	4	416	4	EOMES	3	27758974	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10		27758974	170263456	27	8357											
ZDHHC3	51304	broad.mit.edu;ucsc.edu	37	3	44968182	44968182	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZDHHC3	NM_016598	exon8	c.G983A	p.X328X	GTCCTTCAGACCA	.	143	54	63	1	.	90	T	44968182	C	T	44968182	2	4	58	1	0	0	0	0	0	0	0	1	17613	837	29	3		3	ZDHHC3	3	44968182	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	17209208	44968182	153054248	28	8358											
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57283493	57283493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APPL1	NM_012096	exon11	c.G969T	p.M323I	GGCCATGGACATA	.	162	66	77	0	.	153	T	57283493	G	T	57283493	3	4	58	1	0	0	0	0	1	0	0	0	817	1348	47	3	1011	3	APPL1	3	57283493	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	12315311	57283493	140738937	29	8359											
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125295107	125295107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OSBPL11	NM_022776	exon5	c.G592T	p.V198F	GTCCAACATTAAA	.	196	74	84	0	.	135	A	125295107	C	A	125295107	3	1	58	1	0	0	0	0	1	0	0	0	11276	478	17	3	1687	3	OSBPL11	3	125295107	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	68011614	125295107	72727323	30	8360											
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	145828234	145828234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLOD2	NM_182943	exon4	c.T340C	p.F114L	CATCAAAGCTGTT	.	109	47	61	0	.	92	G	145828234	A	G	145828234	3	3	58	1	0	0	0	0	1	0	0	0	12102	86	3	2	2004	2	PLOD2	3	145828234	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	20533127	145828234	52194196	31	8361											
MLF1	4291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158322940	158322940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MLF1	NM_001195432	exon9	c.G849C	p.L283F	TGTTTTGGGGGAC	.	267	119	102	0	.	658	C	158322940	G	C	158322940	3	2	58	1	0	0	0	0	1	0	0	0	9614	1339	47	4	782	4	MLF1	3	158322940	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	12494706	158322940	39699490	32	8362											
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	159708075	159708075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IL12A	NM_000882	exon2	c.G240T	p.R80S	GCTGAGGGCCGTC	.	142	40	45	0	.	90	T	159708075	G	T	159708075	3	4	58	1	0	0	0	0	1	0	0	0	7624	1223	43	3	246	3	IL12A	3	159708075	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	1385135	159708075	38314355	33	8363											
NAALADL2	254827	broad.mit.edu;bcgsc.ca	37	3	175293976	175293976	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAALADL2	NM_207015	exon10	c.1800+1G>T	.	TTAGAGGTGATTG	.	169	7	57	0	.	47	T	175293976	G	T	175293976	5	4	58	1	0	0	0	0	0	0	1	0	10130	1275	44	3	1839	3	NAALADL2	3	175293976	Splice_Site	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	15585901	175293976	22728454	34	8364											
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180325533	180325533	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTC14	NM_001042601	exon10	c.1270delA	p.K424fs	TTGCAGAAACTTC	.	241	102	99	0	.	91	-	180325533	A	-	180325533	7	5	58	1	0	1	0	1	0	0	0	0	16678	247	9	0	1308	0	TTC14	3	180325533	Frame_Shift_Del	DEL	A	TCGA-DD-A1EB-01A-11D-A12Z-10	5031557	180325533	17696897	35	8365											
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182756877	182756877	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MCCC1	NM_020166	exon12	c.C1314G	p.V438V	CCACACGACCAGC	.	194	89	70	0	.	92	C	182756877	G	C	182756877	2	2	58	1	0	0	0	0	0	0	0	1	9374	1045	37	4		4	MCCC1	3	182756877	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	2431344	182756877	15265553	36	8366											
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030689	190030689	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLDN1	NM_021101	exon2	c.C360A	p.V120V	CCCAATGACAGCC	.	155	53	67	0	.	91	T	190030689	G	T	190030689	2	4	58	1	0	0	0	0	0	0	0	1	3471	1277	45	3		3	CLDN1	3	190030689	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	7273812	190030689	7991741	37	8367											
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197592314	197592314	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRCH3	NM_032773	exon16	c.T1737C	p.A579A	TAATGCTCTATTA	.	253	93	107	0	.	91	C	197592314	T	C	197592314	2	2	58	1	0	0	0	0	0	0	0	1	8934	1538	54	2		2	LRCH3	3	197592314	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	7561625	197592314	430116	38	8368											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44176879	44176879	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCTD8	NM_198353	exon2	c.C1350T	p.I450I	AATGTGGATTTTT	.	210	98	93	0	.	92	A	44176879	G	A	44176879	2	1	58	1	0	0	0	0	0	0	0	1	8115	1164	41	3		3	KCTD8	4	44176879	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		44176879	146977397	39	8369											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46967062	46967062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRA4	NM_000809	exon8	c.G1059T	p.R353S	TGTCTTCCTTTTG	.	620	230	165	0	.	156	A	46967062	C	A	46967062	3	1	58	1	0	0	0	0	1	0	0	0	6163	854	30	3	613	3	GABRA4	4	46967062	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	2790183	46967062	144187214	40	8370											
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47746441	47746441	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CORIN	NM_006587	exon5	c.T777G	p.P259P	CTGCTGAGGTGAG	.	127	41	61	0	.	91	C	47746441	A	C	47746441	2	2	58	1	0	0	0	0	0	0	0	1	3752	291	11	5		5	CORIN	4	47746441	Silent	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	779379	47746441	143407835	41	8371											
SMR3A	26952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71232505	71232505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMR3A	NM_012390	exon3	c.C199A	p.L67I	CCACCCCTTTCTC	.	307	119	105	0	.	90	A	71232505	C	A	71232505	3	1	58	1	0	0	0	0	1	0	0	0	14811	681	24	3	205	3	SMR3A	4	71232505	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	23486064	71232505	119921771	42	8372											
PARM1	25849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75971384	75971384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARM1	NM_015393	exon4	c.A860G	p.Y287C	CCTCCTATGGAAG	.	219	83	89	1	.	1	G	75971384	A	G	75971384	3	3	58	1	0	0	0	0	1	0	0	0	11452	449	16	2	874	2	PARM1	4	75971384	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	4738879	75971384	115182892	43	8373											
C4orf26	152816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76489342	76489342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C4orf26	NM_001206981	exon3	c.C130T	p.R44C	TATTTACGCCTCC	.	71	36	46	0	.	90	T	76489342	C	T	76489342	3	4	58	1	0	0	0	0	1	0	0	0	2257	536	19	1	92	1	C4orf26	4	76489342	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	517958	76489342	114664934	44	8374											
ADH1C	126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100266044	100266044	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	GACCCATAACCAG	.	159	113	99	0	.	.	C	100266044	T	C	100266044	1	2	58	0	1	0	0	0	0	0	0	0	309	1406	49	2		2	ADH1C	4	100266044	RNA	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	23776702	100266044	90888232	45	8375											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104060948	104060948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CENPE	NM_001813	exon38	c.A6202G	p.R2068G	TCACTCTAGCTAT	.	227	153	114	0	.	277	C	104060948	T	C	104060948	3	2	58	1	0	0	0	0	1	0	0	0	3230	1530	53	2	1951	2	CENPE	4	104060948	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	3794904	104060948	87093328	46	8376											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114278315	114278315	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANK2	NM_001148	exon38	c.A8541T	p.S2847S	ATCTTCATCCTCT	.	212	76	67	0	.	583	T	114278315	A	T	114278315	2	4	58	1	0	0	0	0	0	0	0	1	621	204	8	4		4	ANK2	4	114278315	Silent	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	10217367	114278315	76875961	47	8377											
NAA15	80155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140272693	140272693	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAA15	NM_057175	exon9	c.A942G	p.L314L	GTTCCTAAGGATG	.	216	96	86	0	.	92	G	140272693	A	G	140272693	2	3	58	1	0	0	0	0	0	0	0	1	10118	349	13	2		2	NAA15	4	140272693	Silent	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	25994378	140272693	50881583	48	8378											
ING2	3622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184431731	184431731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ING2	NM_001564	exon2	c.A469G	p.T157A	CAGCGGACCAGTG	.	211	79	75	0	.	91	G	184431731	A	G	184431731	3	3	58	1	0	0	0	0	1	0	0	0	7736	275	10	2	475	2	ING2	4	184431731	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	44159038	184431731	6722545	49	8379											
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	186533094	186533094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SORBS2	NM_001270771	exon21	c.G3224A	p.W1075X	TCATACCAGTTTT	.	351	22	113	0	.	91	T	186533094	C	T	186533094	4	4	58	1	0	0	0	0	0	1	0	0	14928	595	21	3	394	3	SORBS2	4	186533094	Nonsense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	2101363	186533094	4621182	50	8380											
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	19612615	19612615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH18	NM_001167667	exon6	c.G739T	p.G247W	AAAGCCCTCCAAC	.	375	192	91	0	.	159	A	19612615	C	A	19612615	3	1	58	1	0	0	0	0	1	0	0	0	3103	681	24	3	1665	3	CDH18	5	19612615	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		19612615	161302645	51	8381											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26906920	26906920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH9	NM_016279	exon4	c.C551T	p.T184I	GCATCTGTTGCAG	.	228	121	67	0	.	99	A	26906920	G	A	26906920	3	1	58	1	0	0	0	0	1	0	0	0	3117	1377	48	3	1854	3	CDH9	5	26906920	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	7294305	26906920	154008340	52	8382											
PLCXD3	345557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41381972	41381972	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLCXD3	NM_001005473	exon2	c.G768A	p.V256V	TTTGACCACAGTG	.	291	162	72	0	.	229	T	41381972	C	T	41381972	2	4	58	1	0	0	0	0	0	0	0	1	12043	581	21	3		3	PLCXD3	5	41381972	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	14475052	41381972	139533288	53	8383											
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	60200656	60200656	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ERCC8	NM_000082	exon5	c.T444C	p.H148H	AGACATATGATGA	.	322	130	108	0	.	227	G	60200656	A	G	60200656	2	3	58	1	0	0	0	0	0	0	0	1	5219	446	16	2		2	ERCC8	5	60200656	Silent	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	18818684	60200656	120714604	54	8384											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79027939	79027953	+	In_Frame_Del	DEL	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CMYA5	NM_153610	exon2	c.3351_3365del	p.1117_1122del	TCAAGCATATTTA	.	191	28	90	0	.	77	-	79027953	ATATTTAGAGCCTGA	-	79027939	7	5	58	1	0	1	0	1	0	0	0	0	3590	204	8	0	3357	0	CMYA5	5	79027939	In_Frame_Del	DEL	ATATTTAGAGCCTGA	TCGA-DD-A1EB-01A-11D-A12Z-10	18827283	79027939	101887321	55	8385											
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	88025144	88025144	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEF2C	NM_001193347	exon10	c.C885A	p.S295S	CGACTGGGAGTTA	.	119	43	54	0	.	704	T	88025144	G	T	88025144	2	4	58	1	0	0	0	0	0	0	0	1	9457	1219	43	3		3	MEF2C	5	88025144	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	8997205	88025144	92890116	56	8386											
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121487810	121487810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF474	NM_207317	exon2	c.C125T	p.S42F	GCCTTTCCCCAGA	.	242	111	90	0	.	90	T	121487810	C	T	121487810	3	4	58	1	0	0	0	0	1	0	0	0	17929	855	30	3	127	3	ZNF474	5	121487810	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	33462666	121487810	59427450	57	8387											
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	128368891	128368891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A6	NM_001017372	exon10	c.C1776A	p.Y592X	ACTTTACTTCATG	.	422	160	123	0	.	90	A	128368891	C	A	128368891	4	1	58	1	0	0	0	0	0	1	0	0	14530	576	20	3	1814	3	SLC27A6	5	128368891	Nonsense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	6881081	128368891	52546369	58	8388											
NEUROG1	4762	ucsc.edu;bcgsc.ca	37	5	134871330	134871330	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NEUROG1	NM_006161	exon1	c.C51T	p.S17S	GCCGCTGCTGCTG	.	48	4	31	0	.	90	A	134871330	G	A	134871330	2	1	58	1	0	0	0	0	0	0	0	1	10352	1310	46	3		3	NEUROG1	5	134871330	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	6502439	134871330	46043930	59	8389											
SIL1	64374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138287486	138287486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIL1	NM_001037633	exon9	c.A855G	p.A285A	CTTCTTTGCAGTG	.	64	22	17	0	.	90	C	138287486	T	C	138287486	2	2	58	1	0	0	0	0	0	0	0	1	14321	1799	63	2		2	SIL1	5	138287486	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	3416156	138287486	42627774	60	8390											
HARS2	23438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140077173	140077173	+	Missense_Mutation	SNP	G	G	A	rs150761811		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HARS2	NM_012208	exon11	c.G1217A	p.R406Q	AGGTGCGGACTAC	.	162	63	63	0	G|1.000;A|0.000	90	A	140077173	G	A	140077173	3	1	58	1	0	0	0	0	1	0	0	0	6960	1116	39	1	1259	1	HARS2	5	140077173	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	1789687	140077173	40838087	61	8391											
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140580796	140580796	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCDHB11	NM_018931	exon1	c.C1449T	p.N483N	CACCAACGCCCAG	.	171	65	64	0	.	96	T	140580796	C	T	140580796	2	4	58	1	0	0	0	0	0	0	0	1	11536	535	19	1		1	PCDHB11	5	140580796	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	503623	140580796	40334464	62	8392											
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176003023	176003023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDHR2	NM_017675	exon12	c.T1031C	p.M344T	GAGTGATGGACGT	.	110	34	42	0	.	70	C	176003023	T	C	176003023	3	2	58	1	0	0	0	0	1	0	0	0	3119	1464	51	2	1073	2	CDHR2	5	176003023	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	35422227	176003023	4912237	63	8393											
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176887553	176887553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DBN1	NM_080881	exon11	c.G841A	p.A281T	CTGCTGCCTCCTG	.	144	69	53	0	.	587	T	176887553	C	T	176887553	3	4	58	1	0	0	0	0	1	0	0	0	4252	739	26	3	1134	3	DBN1	5	176887553	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	884530	176887553	4027707	64	8394											
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178358877	178358877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZFP2	NM_030613	exon5	c.G563T	p.C188F	ATCAGTGTAAAGA	.	52	19	29	0	.	93	T	178358877	G	T	178358877	3	4	58	1	0	0	0	0	1	0	0	0	17638	1377	48	3	565	3	ZFP2	5	178358877	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	1471324	178358877	2556383	65	8395											
NCR2	9436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41309741	41309741	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCR2	NM_001199509	exon4	c.G534T	p.P178P	CAGCCCGTCCTCT	.	63	27	29	0	.	91	T	41309741	G	T	41309741	2	4	58	1	0	0	0	0	0	0	0	1	10238	1160	40	1		1	NCR2	6	41309741	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		41309741	129805326	66	8396											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43153266	43153266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CUL9	NM_015089	exon3	c.G668A	p.R223H	ACAGTCGCTATAC	.	121	52	37	0	.	529	A	43153266	G	A	43153266	3	1	58	1	0	0	0	0	1	0	0	0	4061	1087	38	1	674	1	CUL9	6	43153266	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	1843525	43153266	127961801	67	8397											
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43273593	43273593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CRIP3	NM_206922	exon8	c.G574C	p.G192R	AGCAGCCCACATC	.	178	56	74	0	.	91	G	43273593	C	G	43273593	3	3	58	1	0	0	0	0	1	0	0	0	3876	623	22	4	44	4	CRIP3	6	43273593	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	120327	43273593	127841474	68	8398											
AARS2	57505	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44272531	44272531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AARS2	NM_020745	exon12	c.G1603C	p.V535L	GCAACACCTGGGC	.	229	33	72	1	.	91	G	44272531	C	G	44272531	3	3	58	1	0	0	0	0	1	0	0	0	20	507	18	4	1398	4	AARS2	6	44272531	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	998938	44272531	126842536	69	8399											
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79688429	79688429	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PHIP	NM_017934	exon25	c.2770-1G>T	.	CAATCTCTGACAA	.	151	61	61	0	.	579	A	79688429	C	A	79688429	5	1	58	1	0	0	0	0	0	0	1	0	11842	927	32	3	2764	3	PHIP	6	79688429	Splice_Site	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	35415898	79688429	91426638	70	8400											
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90009577	90009577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRR2	NM_002043	exon2	c.T121C	p.Y41H	TCTTATATAAGTG	.	190	79	74	0	.	68	G	90009577	A	G	90009577	3	3	58	1	0	0	0	0	1	0	0	0	6177	449	16	2	1308	2	GABRR2	6	90009577	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	10321148	90009577	81105490	71	8401											
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107391941	107391941	+	Missense_Mutation	SNP	C	C	T	rs142662918	byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BEND3	NM_001080450	exon5	c.G454A	p.V152M	CGTACACGTTTAG	.	144	59	54	0	C|1.000;G|0.000	71	T	107391941	C	T	107391941	3	4	58	1	0	0	0	0	1	0	0	0	1399	536	19	1	2036	1	BEND3	6	107391941	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	17382364	107391941	63723126	72	8402											
PDSS2	57107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	107475922	107475922	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDSS2	NM_020381	exon8	c.C1101G	p.Y367X	TCCATGGTAACGA	.	122	53	51	0	.	92	C	107475922	G	C	107475922	4	2	58	1	0	0	0	0	0	1	0	0	11694	1256	44	4	102	4	PDSS2	6	107475922	Nonsense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	83981	107475922	63639145	73	8403											
COL10A1	1300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116441243	116441244	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.P679K	CACATTGGAGCCA	.	97	43	38	0	.	.	TT	116441244	GG	TT	116441243	3	4	58	1	0	0	0	0	1	0	0	0	3666	1348	47	3	10	3	COL10A1	6	116441243	Missense_Mutation	DNP	GG	TCGA-DD-A1EB-01A-11D-A12Z-10	8965321	116441243	54673824	74	8404											
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	116987856	116987856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.A500T	p.E167V	ATATCTTCACTGT	.	284	25	95	0	.	69	A	116987856	T	A	116987856	3	1	58	1	0	0	0	0	1	0	0	0	18243	1783	62	4	1272	4	ZUFSP	6	116987856	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	546613	116987856	54127211	75	8405	46	2									
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu	37	6	116987857	116987857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.G499T	p.E167X	TATCTTCACTGTG	.	286	26	95	0	.	69	A	116987857	C	A	116987857	4	1	58	1	0	0	0	0	0	1	0	0	18243	835	29	3	1273	3	ZUFSP	6	116987857	Nonsense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	1	116987857	54127210	76	8406	46	2									
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	136589325	136589325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCLAF1	NM_014739	exon10	c.G2372T	p.G791V	CTAACTCCTGCAA	.	333	37	106	0	.	228	A	136589325	C	A	136589325	3	1	58	1	0	0	0	0	1	0	0	0	1383	855	30	3	406	3	BCLAF1	6	136589325	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	19601468	136589325	34525742	77	8407											
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166944752	166944752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA2	NM_001006932	exon4	c.C290T	p.A97V	TTCATGGCGTAGA	.	108	34	47	0	.	1405	A	166944752	G	A	166944752	3	1	58	1	0	0	0	0	1	0	0	0	13651	1203	42	3	2011	3	RPS6KA2	6	166944752	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	30355427	166944752	4170315	78	8408											
HEATR2	54919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	810170	810170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HEATR2	NM_017802	exon9	c.T1846C	p.S616P	CAGCCCTCCCAAG	.	228	133	54	2	.	69	C	810170	T	C	810170	3	2	58	1	0	0	0	0	1	0	0	0	7028	1551	54	2	1880	2	HEATR2	7	810170	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10		810170	158328493	79	8409											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	11464348	11464348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	THSD7A	NM_015204	exon15	c.G3358C	p.E1120Q	CGCCCTCTCCACA	.	153	14	57	0	.	71	G	11464348	C	G	11464348	3	3	58	1	0	0	0	0	1	0	0	0	15876	922	32	4	1667	4	THSD7A	7	11464348	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	10654178	11464348	147674315	80	8410											
GPNMB	10457	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23296688	23296689	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.W182F	TTGGTTGGCTTTT	.	312	173	114	0	.	.	TT	23296689	GG	TT	23296688	3	4	58	1	0	0	0	0	1	0	0	0	6620	1363	47	3		3	GPNMB	7	23296688	Missense_Mutation	DNP	GG	TCGA-DD-A1EB-01A-11D-A12Z-10	11832340	23296688	135841975	81	8411											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31691634	31691634	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001257968	exon13	c.G2871T	p.R957R	AGACCGGGCTCAG	.	444	210	113	0	.	.	T	31691634	G	T	31691634	2	4	58	1	0	0	0	0	0	0	0	1	2764	1219	43	3		3	CCDC129	7	31691634	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	8394946	31691634	127447029	82	8412											
UPP1	7378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48147819	48147819	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UPP1	NM_003364	exon9	c.C798T	p.A266A	AGCGGCCGTGGTG	.	58	27	20	0	.	514	T	48147819	C	T	48147819	2	4	58	1	0	0	0	0	0	0	0	1	17009	639	23	1		1	UPP1	7	48147819	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	16456185	48147819	110990844	83	8413											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48559835	48559835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABCA13	NM_152701	exon53	c.A13996G	p.T4666A	CAGGGCACAGTAC	.	275	92	98	0	.	521	G	48559835	A	G	48559835	3	3	58	1	0	0	0	0	1	0	0	0	31	159	6	2	14035	2	ABCA13	7	48559835	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	412016	48559835	110578828	84	8414											
TFEC	22797	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	115624439	115624439	+	Silent	SNP	C	C	A	rs34738022	byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TFEC	NM_001018058	exon2	c.G57T	p.V19V	ACTTGGCACTGCA	.	393	158	127	0	C|0.983;T|0.017	153	A	115624439	C	A	115624439	2	1	58	1	0	0	0	0	0	0	0	1	15799	697	25	3		3	TFEC	7	115624439	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	67064604	115624439	43514224	85	8415											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117375351	117375351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTTNBP2	NM_033427	exon15	c.C3660A	p.S1220R	TTCAGTGCTGCGA	.	151	67	72	0	.	94	T	117375351	G	T	117375351	3	4	58	1	0	0	0	0	1	0	0	0	4045	1310	46	3	1367	3	CTTNBP2	7	117375351	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	1750912	117375351	41763312	86	8416											
KLHDC10	23008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129760678	129760679	+	Nonsense_Mutation	DNP	GT	GT	TA	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.V189*	TGTAATGTGAAGT	.	326	76	74	0	.	.	TA	129760679	GT	TA	129760678	4	4	58	1	0	0	0	0	0	1	0	0	8355	1377	48	3	579	3	KLHDC10	7	129760678	Nonsense_Mutation	DNP	GT	TCGA-DD-A1EB-01A-11D-A12Z-10	12385327	129760678	29377985	87	8417											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131883315	131883315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNA4	NM_020911	exon13	c.C2667A	p.D889E	GGCGATGTCGCGA	.	41	9	23	0	.	91	T	131883315	G	T	131883315	3	4	58	1	0	0	0	0	1	0	0	0	12122	1368	48	3	3097	3	PLXNA4	7	131883315	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	2122637	131883315	27255348	88	8418											
FAM180A	389558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135418945	135418945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM180A	NM_205855	exon3	c.C300A	p.S100R	TGGGATGCTCTTG	.	93	41	41	0	.	92	T	135418945	G	T	135418945	3	4	58	1	0	0	0	0	1	0	0	0	5507	1310	46	3	225	3	FAM180A	7	135418945	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	3535630	135418945	23719718	89	8419											
ARHGEF5	7984	broad.mit.edu;bcgsc.ca	37	7	144070301	144070302	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.C1355F	GGGACTGCAATAA	.	1385	222	189	0	.	.	TT	144070302	GC	TT	144070301	3	4	58	1	0	0	0	0	1	0	0	0	909	1319	46	3	4098	3	ARHGEF5	7	144070301	Missense_Mutation	DNP	GC	TCGA-DD-A1EB-01A-11D-A12Z-10	8651356	144070301	15068362	90	8420											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2976080	2976080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSMD1	NM_033225	exon42	c.C6271A	p.P2091T	ATGGGGGTGGATC	.	140	55	57	0	.	86	T	2976080	G	T	2976080	3	4	58	1	0	0	0	0	1	0	0	0	3944	1261	44	3	4539	3	CSMD1	8	2976080	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		2976080	143387942	91	8421											
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	13965672	13965672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SGCZ	NM_139167	exon6	c.G620A	p.R207K	CCTTACCTGAGAT	.	178	64	76	0	.	93	T	13965672	C	T	13965672	3	4	58	1	0	0	0	0	1	0	0	0	14204	695	24	3	330	3	SGCZ	8	13965672	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	10989592	13965672	132398350	92	8422											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48839799	48839799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRKDC	.	.	.	.	GGAGAATGTCTTT	.	139	59	58	0	.	1515	C	48839799	T	C	48839799	3	2	58	1	0	0	0	0	1	0	0	0	12521	1464	51	2	10275	2	PRKDC	8	48839799	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	34874127	48839799	97524223	93	8423											
PXDNL	137902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52321693	52321693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PXDNL	NM_144651	exon17	c.C2491T	p.P831S	TGCACGGCCGCCC	.	67	35	25	1	.	70	A	52321693	G	A	52321693	3	1	58	1	0	0	0	0	1	0	0	0	12848	1203	42	3	1928	3	PXDNL	8	52321693	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	3481894	52321693	94042329	94	8424											
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	89339405	89339405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MMP16	NM_005941	exon1	c.C31G	p.R11G	CCAACCGTCTTCC	.	113	32	65	0	.	231	C	89339405	G	C	89339405	3	2	58	1	0	0	0	0	1	0	0	0	9655	1144	40	4	1988	4	MMP16	8	89339405	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	37017712	89339405	57024617	95	8425											
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121530146	121530146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MTBP	NM_022045	exon19	c.A2302G	p.N768D	AATAGTAATCACT	.	108	46	34	0	.	228	G	121530146	A	G	121530146	3	3	58	1	0	0	0	0	1	0	0	0	9912	362	13	2	2376	2	MTBP	8	121530146	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	32190741	121530146	24833876	96	8426											
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6981046	6981046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM4C	NM_001146696	exon9	c.C1109T	p.P370L	CGAAGCCTACTCC	.	92	45	38	0	.	228	T	6981046	C	T	6981046	3	4	58	1	0	0	0	0	1	0	0	0	8130	681	24	3	1143	3	KDM4C	9	6981046	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		6981046	134232385	97	8427											
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26923264	26923264	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLAA	NM_001031689	exon7	c.G951T	p.L317L	GTGAGACAGTTCT	.	343	122	111	0	.	514	A	26923264	C	A	26923264	2	1	58	1	0	0	0	0	0	0	0	1	12011	465	17	3		3	PLAA	9	26923264	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	19942218	26923264	114290167	98	8428											
ANKRD20A1	84210	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	67968357	67968357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANKRD20A1	NM_032250	exon15	c.A1916T	p.D639V	CACGAGATGTTTC	.	1051	289	165	0	.	68	T	67968357	A	T	67968357	3	4	58	1	0	0	0	0	1	0	0	0	648	333	12	4	1974	4	ANKRD20A1	9	67968357	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	41045093	67968357	73245074	99	8429											
APBA1	320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	72064664	72064664	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APBA1	NM_001163	exon10	c.G2017T	p.E673X	CAGACTCCACAAT	.	98	38	48	0	.	91	A	72064664	C	A	72064664	4	1	58	1	0	0	0	0	0	1	0	0	756	864	30	3	512	3	APBA1	9	72064664	Nonsense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	4096307	72064664	69148767	100	8430											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72879327	72879327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMC5	NM_015110	exon2	c.C293G	p.A98G	GTTTAGCTGGAAA	.	331	155	92	0	.	229	G	72879327	C	G	72879327	3	3	58	1	0	0	0	0	1	0	0	0	14786	797	28	4	299	4	SMC5	9	72879327	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	814663	72879327	68334104	101	8431											
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86457172	86457172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIF27	NM_017576	exon17	c.G3701A	p.R1234Q	AGTTGCCGCCGAA	.	603	245	138	0	.	523	T	86457172	C	T	86457172	3	4	58	1	0	0	0	0	1	0	0	0	8296	652	23	1	512	1	KIF27	9	86457172	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	13577845	86457172	54756259	102	8432											
RALGDS	5900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135984101	135984101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RALGDS	NM_006266	exon5	c.C737T	p.A246V	AGCTGGGCCAGGA	.	50	32	33	0	.	722	A	135984101	G	A	135984101	3	1	58	1	0	0	0	0	1	0	0	0	13016	1203	42	3	2063	3	RALGDS	9	135984101	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	49526929	135984101	5229330	103	8433											
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	67829142	67829142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTNNA3	NM_001127384	exon15	c.G2083T	p.D695Y	TATCATCCCATAT	.	354	140	121	0	.	234	A	67829142	C	A	67829142	3	1	58	1	0	0	0	0	1	0	0	0	4014	855	30	3	620	3	CTNNA3	10	67829142	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		67829142	67705605	104	8434											
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106075119	106075119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.C691T	p.R231C	CTGAGCGGCCGGA	.	77	43	38	0	.	90	A	106075119	G	A	106075119	3	1	58	1	0	0	0	0	1	0	0	0	7923	1116	39	1	956	1	ITPRIP	10	106075119	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	38245977	106075119	29459628	105	8435											
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106075611	106075611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.G199C	p.E67Q	GTGCCTCCTTTTC	.	80	25	30	0	.	90	G	106075611	C	G	106075611	3	3	58	1	0	0	0	0	1	0	0	0	7923	864	30	4	1448	4	ITPRIP	10	106075611	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	492	106075611	29459136	106	8436											
TECTB	6975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114046139	114046139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TECTB	NM_058222	exon4	c.A473G	p.N158S	CTCTCAACTTCTA	.	142	55	66	0	.	90	G	114046139	A	G	114046139	3	3	58	1	0	0	0	0	1	0	0	0	15745	43	2	2	487	2	TECTB	10	114046139	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	7970528	114046139	21488608	107	8437											
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846536	123846536	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TACC2	NM_206862	exon4	c.G4521T	p.R1507R	GGAGCGGAACTTG	.	53	17	27	0	.	296	T	123846536	G	T	123846536	2	4	58	1	0	0	0	0	0	0	0	1	15499	1161	41	3		3	TACC2	10	123846536	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	9800397	123846536	11688211	108	8438											
OR2AG2	338755	broad.mit.edu;bcgsc.ca	37	11	6790153	6790153	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR2AG2	NM_001004490	exon1	c.C36T	p.F12F	CAAGATGAAGCCG	.	155	7	53	0	.	71	A	6790153	G	A	6790153	2	1	58	1	0	0	0	0	0	0	0	1	10985	1281	45	3		3	OR2AG2	11	6790153	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		6790153	128216363	109	8439											
SPTY2D1	144108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18638422	18638422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPTY2D1	NM_194285	exon2	c.G175C	p.A59P	ACATACCTTTTCG	.	255	107	103	0	.	90	G	18638422	C	G	18638422	3	3	58	1	0	0	0	0	1	0	0	0	15125	695	24	4	1902	4	SPTY2D1	11	18638422	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	11848269	18638422	116368094	110	8440											
OR1S1	219959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57983007	57983007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR1S1	NM_001004458	exon1	c.T791A	p.F264Y	TACTGTTCTACGG	.	255	112	91	1	.	113	A	57983007	T	A	57983007	3	1	58	1	0	0	0	0	1	0	0	0	10972	1783	62	4	793	4	OR1S1	11	57983007	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	39344585	57983007	77023509	111	8441											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58979138	58979139	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MPEG1	NM_001039396	exon1	c.1201_1202insC	p.E401fs	TCTGCTCCAACTT	.	127	36	55	0	.	70	G	58979139	-	G	58979138	7	5	58	1	0	1	1	0	0	0	0	0	9723	864	30	0	953	0	MPEG1	11	58979138	Frame_Shift_Ins	INS	-	TCGA-DD-A1EB-01A-11D-A12Z-10	996131	58979138	76027378	112	8442											
GANAB	23193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62407128	62407128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GANAB	NM_198334	exon2	c.T114C	p.F38F	GGTCTTAAAGTTG	.	194	86	90	0	.	94	G	62407128	A	G	62407128	2	3	58	1	0	0	0	0	0	0	0	1	6233	359	13	2		2	GANAB	11	62407128	Silent	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	3427990	62407128	72599388	113	8443											
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65479799	65479799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KAT5	NM_182710	exon1	c.A61G	p.R21G	GTGGGTAGAGCCC	.	104	37	56	0	.	90	G	65479799	A	G	65479799	3	3	58	1	0	0	0	0	1	0	0	0	7983	412	15	2	63	2	KAT5	11	65479799	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	3072671	65479799	69526717	114	8444											
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66975117	66975117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon6	c.T444A	p.F148L	CGAGTTTAGCCAC	.	125	50	42	0	.	661	A	66975117	T	A	66975117	3	1	58	1	0	0	0	0	1	0	0	0	8124	1751	61	4	462	4	KDM2A	11	66975117	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	1495318	66975117	68031399	115	8445											
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66986855	66986855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon10	c.A938G	p.N313S	TATACAACATTGA	.	153	65	58	0	.	661	G	66986855	A	G	66986855	3	3	58	1	0	0	0	0	1	0	0	0	8124	43	2	2	972	2	KDM2A	11	66986855	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	11738	66986855	68019661	116	8446											
KRTAP5-8	57830	hgsc.bcm.edu;bcgsc.ca	37	11	71249121	71249121	+	Missense_Mutation	SNP	C	C	G	rs200585722		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP5-8	NM_021046	exon1	c.C20G	p.S7C	GCTGCTCTGGAGG	.	325	17	72	0	.	44	G	71249121	C	G	71249121	3	3	58	1	0	0	0	0	1	0	0	0	8567	913	32	4	22	4	KRTAP5-8	11	71249121	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	4262266	71249121	63757395	117	8447											
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103870889	103870889	+	Silent	SNP	G	G	A	rs200239592	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDGFD	NM_025208	exon2	c.C219T	p.Y73Y	CCTGGGGTAGCTG	.	423	163	113	0	G|0.999;C|0.000	723	A	103870889	G	A	103870889	2	1	58	1	0	0	0	0	0	0	0	1	11660	1256	44	3		3	PDGFD	11	103870889	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	32621768	103870889	31135627	118	8448											
GRIK4	2900	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	120827654	120827654	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIK4	NM_014619	exon14	c.T1866C	p.S622S	TGTCAGTGGCGTC	.	24	14	15	0	.	92	C	120827654	T	C	120827654	2	2	58	1	0	0	0	0	0	0	0	1	6776	1693	59	2		2	GRIK4	11	120827654	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	16956765	120827654	14178862	119	8449											
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133714431	133714431	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPATA19	NM_174927	exon3	c.C240A	p.G80G	GTCCTGGCCATGG	.	219	91	78	0	.	90	T	133714431	G	T	133714431	2	4	58	1	0	0	0	0	0	0	0	1	15003	1190	42	3		3	SPATA19	11	133714431	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	12886777	133714431	1292085	120	8450											
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13720174	13720174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIN2B	NM_000834	exon12	c.C2383T	p.L795F	GCCAGAGAGCTTC	.	172	69	61	0	.	231	A	13720174	G	A	13720174	3	1	58	1	0	0	0	0	1	0	0	0	6780	942	33	3	2079	3	GRIN2B	12	13720174	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		13720174	120131721	121	8451											
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCAT1	NM_001178093	exon8	c.T920C	p.L307P	AGGTCCAGAATGC	.	171	67	80	0	.	522	G	24989464	A	G	24989464	3	3	58	1	0	0	0	0	1	0	0	0	1354	188	7	2	292	2	BCAT1	12	24989464	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	11269290	24989464	108862431	122	8452											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70970186	70970186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTPRB	NM_001109754	exon11	c.C2818A	p.H940N	AGGAGTGATTTTC	.	234	81	88	0	.	226	T	70970186	G	T	70970186	3	4	58	1	0	0	0	0	1	0	0	0	12796	1290	45	3	3925	3	PTPRB	12	70970186	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	45980722	70970186	62881709	123	8453											
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86374008	86374008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGAT4C	NM_013244	exon7	c.G496T	p.A166S	TTCCTGCAATAAT	.	109	48	44	0	.	93	A	86374008	C	A	86374008	3	1	58	1	0	0	0	0	1	0	0	0	9547	710	25	3	944	3	MGAT4C	12	86374008	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	15403822	86374008	47477887	124	8454											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88486497	88486497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CEP290	NM_025114	exon29	c.T3422C	p.L1141S	TTCTCTAATTCTA	.	366	150	119	0	.	96	G	88486497	A	G	88486497	3	3	58	1	0	0	0	0	1	0	0	0	3253	372	13	2	4121	2	CEP290	12	88486497	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	2112489	88486497	45365398	125	8455											
SIRT4	23409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120741415	120741415	+	Silent	SNP	C	C	T	rs199859894		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIRT4	NM_012240	exon2	c.C51T	p.I17I	TTGGATCGCAAAC	.	86	25	40	0	.	226	T	120741415	C	T	120741415	2	4	58	1	0	0	0	0	0	0	0	1	14340	874	31	1		1	SIRT4	12	120741415	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	32254918	120741415	13110480	126	8456											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121416711	121416714	+	Frame_Shift_Del	DEL	GGGA	GGGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GGGA	GGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon1	c.140_143del	p.47_48del	ACAAGGGGGAGTC	.	96	33	42	0	.	1745	-	121416714	GGGA	-	121416711	7	5	58	1	0	1	0	1	0	0	0	0	7251	1232	43	0	142	0	HNF1A	12	121416711	Frame_Shift_Del	DEL	GGGA	TCGA-DD-A1EB-01A-11D-A12Z-10	675296	121416711	12435184	127	8457											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	121432014	121432014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon4	c.T761A	p.L254Q	AGGGGCTGGGCTC	.	71	21	34	0	.	1745	A	121432014	T	A	121432014	3	1	58	1	0	0	0	0	1	0	0	0	7251	1580	55	4	775	4	HNF1A	12	121432014	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	15303	121432014	12419881	128	8458											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35672500	35672500	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NBEA	NM_015678	exon11	c.G1638T	p.L546L	GATGCTGGGTGGA	.	178	64	70	0	.	144	T	35672500	G	T	35672500	2	4	58	1	0	0	0	0	0	0	0	1	10187	1335	47	3		3	NBEA	13	35672500	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		35672500	79497378	129	8459											
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37678916	37678916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSNK1A1L	NM_145203	exon1	c.T478A	p.L160M	TGGCCAAACCAAA	.	743	336	152	0	.	396	T	37678916	A	T	37678916	3	4	58	1	0	0	0	0	1	0	0	0	3951	11	1	4	539	4	CSNK1A1L	13	37678916	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	2006416	37678916	77490962	130	8460											
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53254291	53254291	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SUGT1	NM_001130912	exon13	c.996+1G>T	.	TCCTTTGTAAGAA	.	142	44	76	0	.	226	T	53254291	G	T	53254291	5	4	58	1	0	0	0	0	0	0	1	0	15368	1391	48	3	1047	3	SUGT1	13	53254291	Splice_Site	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	15575375	53254291	61915587	131	8461											
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	76055603	76055603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TBC1D4	NM_014832	exon1	c.G301A	p.A101T	CCGAGGCCCCAGC	.	80	39	26	0	.	95	T	76055603	C	T	76055603	3	4	58	1	0	0	0	0	1	0	0	0	15619	739	26	3	3679	3	TBC1D4	13	76055603	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	22801312	76055603	39114275	132	8462											
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	109540788	109540788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO16	NM_001198950	exon14	c.G1622T	p.G541V	GGGCTGGCGCCAG	.	202	81	69	0	.	142	T	109540788	G	T	109540788	3	4	58	1	0	0	0	0	1	0	0	0	10064	1203	42	3	1606	3	MYO16	13	109540788	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	33485185	109540788	5629090	133	8463											
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20344661	20344661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K2	NM_001005501	exon1	c.C235A	p.P79T	GCCACCCCAAAGA	.	413	119	124	0	.	72	A	20344661	C	A	20344661	3	1	58	1	0	0	0	0	1	0	0	0	11072	623	22	3	237	3	OR4K2	14	20344661	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		20344661	87004879	134	8464											
OR4K1	79544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20404418	20404418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K1	NM_001004063	exon1	c.T593G	p.M198R	AAATTATGACCCT	.	284	74	132	0	.	71	G	20404418	T	G	20404418	3	3	58	1	0	0	0	0	1	0	0	0	11067	1464	51	5	595	5	OR4K1	14	20404418	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	59757	20404418	86945122	135	8465											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23897841	23897841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYH7	NM_000257	exon15	c.C1446T	p.N482N	CTTCTCGTTGGTG	.	381	19	96	0	.	94	A	23897841	G	A	23897841	2	1	58	1	0	0	0	0	0	0	0	1	10039	1136	40	1		1	MYH7	14	23897841	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	3493423	23897841	83451699	136	8466											
NID2	22795	broad.mit.edu;mdanderson.org	37	14	52535526	52535526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NID2	NM_007361	exon1	c.A187T	p.N63Y	GGGGATTCGCCAG	.	33	10	17	0	.	158	A	52535526	T	A	52535526	3	1	58	1	0	0	0	0	1	0	0	0	10415	1783	62	4	4028	4	NID2	14	52535526	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	28637685	52535526	54814014	137	8467											
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60074128	60074128	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_021136	exon4	c.C1848A	p.T616T	GAACTGGGTCAGG	.	78	33	18	0	.	516	T	60074128	G	T	60074128	2	4	58	1	0	0	0	0	0	0	0	1	13725	1219	43	3		3	RTN1	14	60074128	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	7538602	60074128	47275412	138	8468											
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60097163	60097163	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_206852	exon2	c.61+1G>T	.	AGAATACCCTGAC	.	78	23	31	0	.	516	A	60097163	C	A	60097163	5	1	58	1	0	0	0	0	0	0	1	0	13725	521	18	3	592	3	RTN1	14	60097163	Splice_Site	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	23035	60097163	47252377	139	8469											
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	77751296	77751296	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POMT2	NM_013382	exon14	c.A1573T	p.K525X	CACACTTGGGATT	.	126	50	52	0	.	91	A	77751296	T	A	77751296	4	1	58	1	0	0	0	0	0	1	0	0	12246	1821	63	4	711	4	POMT2	14	77751296	Nonsense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	17654133	77751296	29598244	140	8470											
DYNC1H1	1778	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102467528	102467528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DYNC1H1	NM_001376	exon20	c.G4232A	p.R1411H	AAGACCGCCATTG	.	261	90	109	2	.	98	A	102467528	G	A	102467528	3	1	58	1	0	0	0	0	1	0	0	0	4841	1087	38	1	4310	1	DYNC1H1	14	102467528	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	24716232	102467528	4882012	141	8471											
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105418058	105418058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AHNAK2	NM_138420	exon7	c.G3730C	p.G1244R	GGTGCCCTTTGAA	.	63	54	41	1	.	47	G	105418058	C	G	105418058	3	3	58	1	0	0	0	0	1	0	0	0	415	681	24	4	13661	4	AHNAK2	14	105418058	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	2950530	105418058	1931482	142	8472											
MAGEL2	54551	broad.mit.edu;mdanderson.org	37	15	23889987	23889987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_019066	exon1	c.G2903T	p.S968I	CAGGCACTCAGGG	.	17	6	10	0	.	.	A	23889987	C	A	23889987	3	1	58	1	0	0	0	0	1	0	0	0	9189	565	20	3	850	3	MAGEL2	15	23889987	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		23889987	78641405	143	8473											
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	37329148	37329148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEIS2	NM_170676	exon8	c.A767T	p.D256V	CTGTTGTCTAAAC	.	236	114	83	0	.	92	A	37329148	T	A	37329148	3	1	58	1	0	0	0	0	1	0	0	0	9468	1667	58	4	749	4	MEIS2	15	37329148	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	13439161	37329148	65202244	144	8474											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42059127	42059127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGA	NM_001164273	exon24	c.G8847A	p.K2949K	AGGGAAGAATACT	.	80	26	49	0	.	522	A	42059127	G	A	42059127	2	1	58	1	0	0	0	0	0	0	0	1	9540	933	33	3		3	MGA	15	42059127	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	4729979	42059127	60472265	145	8475											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48780612	48780612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FBN1	NM_000138	exon26	c.G3161A	p.R1054K	TCACACCTGCACT	.	123	52	40	0	.	92	T	48780612	C	T	48780612	3	4	58	1	0	0	0	0	1	0	0	0	5702	681	24	3	5618	3	FBN1	15	48780612	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	6721485	48780612	53750780	146	8476											
SLC27A2	11001	broad.mit.edu;bcgsc.ca	37	15	50518239	50518239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A2	NM_003645	exon6	c.C1222T	p.R408C	CCTGTCCGTGATG	.	197	8	75	0	.	92	T	50518239	C	T	50518239	3	4	58	1	0	0	0	0	1	0	0	0	14526	652	23	1	1244	1	SLC27A2	15	50518239	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	1737627	50518239	52013153	147	8477											
PDCD7	10081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65426109	65426109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDCD7	NM_005707	exon1	c.C11T	p.P4L	AATGGTGGCAGGG	.	71	29	26	0	.	227	A	65426109	G	A	65426109	3	1	58	1	0	0	0	0	1	0	0	0	11625	1348	47	3	1466	3	PDCD7	15	65426109	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	14907870	65426109	37105283	148	8478											
IDH3A	3419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78454584	78454584	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IDH3A	NM_005530	exon6	c.T486C	p.D162D	TGTTGATGGAGTC	.	106	64	26	0	.	226	C	78454584	T	C	78454584	2	2	58	1	0	0	0	0	0	0	0	1	7496	1461	51	2		2	IDH3A	15	78454584	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	13028475	78454584	24076808	149	8479											
UNKL	64718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1420138	1420138	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNKL	NM_001193388	exon12	c.C1578T	p.S526S	TAGGGGGCTGTAG	.	33	13	11	0	.	90	A	1420138	G	A	1420138	2	1	58	1	0	0	0	0	0	0	0	1	16998	1194	42	3		3	UNKL	16	1420138	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		1420138	88934615	150	8480											
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28112968	28112968	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	XPO6	NM_015171	exon23	c.G3087T	p.V1029V	GAGCAGCACGTTC	.	40	16	24	0	.	227	A	28112968	C	A	28112968	2	1	58	1	0	0	0	0	0	0	0	1	17445	697	25	3		3	XPO6	16	28112968	Silent	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	26692830	28112968	62241785	151	8481											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30750324	30750324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRCAP	NM_006662	exon34	c.C8963T	p.T2988I	CTGCTACTGTTGC	.	91	35	40	0	.	94	T	30750324	C	T	30750324	3	4	58	1	0	0	0	0	1	0	0	0	15134	565	20	3	9089	3	SRCAP	16	30750324	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	2637356	30750324	59604429	152	8482											
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70190496	70190496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDPR	NM_017990	exon19	c.G2354T	p.W785L	CTTGGTGGGGAGA	.	177	24	65	0	.	135	T	70190496	G	T	70190496	3	4	58	1	0	0	0	0	1	0	0	0	11689	1357	47	3	2420	3	PDPR	16	70190496	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	39440172	70190496	20164257	153	8483											
TCF25	22980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89960138	89960138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCF25	NM_014972	exon7	c.C700G	p.L234V	CCAGGTCTGTCCA	.	153	42	30	0	.	90	G	89960138	C	G	89960138	3	3	58	1	0	0	0	0	1	0	0	0	15690	912	32	4	726	4	TCF25	16	89960138	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	19769642	89960138	394615	154	8484											
MYO1C	4641	ucsc.edu;bcgsc.ca	37	17	1381481	1381481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO1C	NM_001080779	exon12	c.A1301G	p.E434G	AACTGCTCAAAGC	.	32	4	35	0	.	90	C	1381481	T	C	1381481	3	2	58	1	0	0	0	0	1	0	0	0	10070	1551	54	2	1974	2	MYO1C	17	1381481	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10		1381481	79813729	155	8485											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578554	7578554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	TP53,NS,carcinoma,+2	TP53	NM_000546	exon5	c.T376G	p.Y126D	GGGAGTACTGTAG	.	21	14	17	0	.	70225	C	7578554	A	C	7578554	3	2	58	1	0	0	0	0	1	0	0	0	16378	405	14	5	922	5	TP53	17	7578554	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	6197073	7578554	73616656	156	8486											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27493801	27493801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18A	NM_078471	exon2	c.A158G	p.K53R	TCACGCTTGGAGG	.	225	81	79	0	.	22	C	27493801	T	C	27493801	3	2	58	1	0	0	0	0	1	0	0	0	10065	1609	56	2	6170	2	MYO18A	17	27493801	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	19915247	27493801	53701409	157	8487											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36483358	36483358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR179	NM_001004334	exon11	c.G6094T	p.V2032L	TTGACACCCCTTT	.	142	57	70	0	.	93	A	36483358	C	A	36483358	3	1	58	1	0	0	0	0	1	0	0	0	6674	507	18	3	1013	3	GPR179	17	36483358	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	8989557	36483358	44711852	158	8488											
G6PC3	92579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42152763	42152763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	G6PC3	NM_138387	exon5	c.G621A	p.M207I	CCTCATGCTAGGC	.	286	99	93	0	.	91	A	42152763	G	A	42152763	3	1	58	1	0	0	0	0	1	0	0	0	6145	1319	46	3	639	3	G6PC3	17	42152763	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	5669405	42152763	39042447	159	8489											
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73836847	73836847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13D	NM_199242	exon8	c.C679A	p.R227S	ACCTGCGAAGCCC	.	251	68	53	0	.	92	T	73836847	G	T	73836847	3	4	58	1	0	0	0	0	1	0	0	0	16984	1058	37	1	2693	1	UNC13D	17	73836847	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	31684084	73836847	7358363	160	8490											
LPIN2	9663	ucsc.edu;bcgsc.ca	37	18	2923820	2923820	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LPIN2	NM_014646	exon16	c.A2127G	p.K709K	CCAGTCTTTGCCC	.	45	4	28	0	.	227	C	2923820	T	C	2923820	2	2	58	1	0	0	0	0	0	0	0	1	8919	1606	56	2		2	LPIN2	18	2923820	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10		2923820	75153428	161	8491											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72346946	72346946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF407	NM_001146190	exon1	c.G3971A	p.G1324D	AGGATGGCCCAGC	.	104	48	48	0	.	92	A	72346946	G	A	72346946	3	1	58	1	0	0	0	0	1	0	0	0	17884	1203	42	3	3973	3	ZNF407	18	72346946	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	69423126	72346946	5730302	162	8492											
ZNF490	57474	ucsc.edu;bcgsc.ca	37	19	12692087	12692087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF490	NM_020714	exon5	c.C802T	p.H268Y	TTTCATGGCGCCG	.	37	4	55	0	.	90	A	12692087	G	A	12692087	3	1	58	1	0	0	0	0	1	0	0	0	17938	1348	47	3	791	3	ZNF490	19	12692087	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10		12692087	46436896	163	8493											
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15512065	15512065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AKAP8L	NM_014371	exon5	c.G712A	p.G238S	CCCCACCTCGCAT	.	22	17	19	0	.	1	T	15512065	C	T	15512065	3	4	58	1	0	0	0	0	1	0	0	0	458	681	24	3	1268	3	AKAP8L	19	15512065	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	2819978	15512065	43616918	164	8494											
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53057994	53057994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001039886	exon5	c.G1825T	p.A609S	AAATCAGCTCTTG	.	77	30	39	0	.	.	T	53057994	G	T	53057994	3	4	58	1	0	0	0	0	1	0	0	0	18170	971	34	3	1835	3	ZNF808	19	53057994	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	37545929	53057994	6070989	165	8495											
ZNF611	81856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53209133	53209133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF611	NM_030972	exon7	c.A1175G	p.H392R	CCAGTATGAATTC	.	107	41	60	0	.	91	C	53209133	T	C	53209133	3	2	58	1	0	0	0	0	1	0	0	0	18034	1464	51	2	946	2	ZNF611	19	53209133	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	151139	53209133	5919850	166	8496											
SIRPA	140885	ucsc.edu;bcgsc.ca	37	20	1896059	1896060	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.V132T	GATGACGTGGAGT	.	308	44	104	0	.	.	AC	1896060	GT	AC	1896059	3	1	58	1	0	0	0	0	1	0	0	0	14332	1145	40	1	400	1	SIRPA	20	1896059	Missense_Mutation	DNP	GT	TCGA-DD-A1EB-01A-11D-A12Z-10		1896059	61129461	167	8497											
PCNA	5111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5096123	5096123	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCNA	NM_002592	exon6	c.A678G	p.T226T	ACTGAGTGTCACC	.	239	104	93	0	.	651	C	5096123	T	C	5096123	2	2	58	1	0	0	0	0	0	0	0	1	11588	1683	59	2		2	PCNA	20	5096123	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	3200064	5096123	57929397	168	8498											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47269916	47269916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREX1	NM_020820	exon20	c.C2329T	p.R777W	CGCGCCGACTCCG	.	55	27	22	0	.	231	A	47269916	G	A	47269916	3	1	58	1	0	0	0	0	1	0	0	0	12476	1057	37	1	2734	1	PREX1	20	47269916	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	42173793	47269916	15755604	169	8499											
CABLES2	81928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60968622	60968622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CABLES2	NM_031215	exon6	c.C754A	p.L252M	TGACCAGGGCGTT	.	120	57	52	0	.	91	T	60968622	G	T	60968622	3	4	58	1	0	0	0	0	1	0	0	0	2530	991	35	3	702	3	CABLES2	20	60968622	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	13698706	60968622	2056898	170	8500											
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34876612	34876612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GART	NM_001136005	exon22	c.A2852T	p.D951V	CCAGCATCCACAT	.	99	35	46	0	.	91	A	34876612	T	A	34876612	3	1	58	1	0	0	0	0	1	0	0	0	6243	1435	50	4	184	4	GART	21	34876612	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10		34876612	13253283	171	8501											
KRTAP10-6	386674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46011435	46011435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP10-6	NM_198688	exon1	c.G931T	p.V311L	TGCACACAGGGTG	.	306	119	95	0	.	90	A	46011435	C	A	46011435	3	1	58	1	0	0	0	0	1	0	0	0	8513	478	17	3	170	3	KRTAP10-6	21	46011435	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	11134823	46011435	2118460	172	8502											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18273818	18273818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MICAL3	NM_015241	exon31	c.G5770A	p.E1924K	GGTCTTCCAGCTC	.	52	21	21	0	.	68	T	18273818	C	T	18273818	3	4	58	1	0	0	0	0	1	0	0	0	9571	864	30	3	246	3	MICAL3	22	18273818	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10		18273818	33030748	173	8503											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423608	26423608	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18B	NM_032608	exon43	c.T7668C	p.D2556D	CGACGATGTTGCG	.	93	35	39	0	.	142	C	26423608	T	C	26423608	2	2	58	1	0	0	0	0	0	0	0	1	10066	1461	51	2		2	MYO18B	22	26423608	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	8149790	26423608	24880958	174	8504											
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26706636	26706636	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SEZ6L	NM_021115	exon7	c.G1515A	p.R505R	TGCCAGGATGACG	.	102	36	44	0	.	95	A	26706636	G	A	26706636	2	1	58	1	0	0	0	0	0	0	0	1	14143	1188	41	3		3	SEZ6L	22	26706636	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	283028	26706636	24597930	175	8505											
TRMU	55687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46751486	46751486	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRMU	NM_018006	exon9	c.1018+1G>A	.	CACTAGGTGACTG	.	53	39	27	0	.	23	A	46751486	G	A	46751486	5	1	58	1	0	0	0	0	0	0	1	0	16568	1275	44	3	1053	3	TRMU	22	46751486	Splice_Site	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	20044850	46751486	4553080	176	8506											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240505	3240505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MXRA5	NM_015419	exon5	c.A3221T	p.E1074V	TCTCCCTCTAGCA	.	520	190	132	0	.	136	A	3240505	T	A	3240505	3	1	58	1	0	0	0	0	1	0	0	0	10003	1551	54	4	5277	4	MXRA5	23	3240505	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10		3240505	152030055	177	8507											
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12712563	12712563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRMPD4	NM_014728	exon9	c.T923C	p.L308P	AGTATCTCTATGT	.	328	132	103	0	.	263	C	12712563	T	C	12712563	3	2	58	1	0	0	0	0	1	0	0	0	6059	1551	54	2	957	2	FRMPD4	23	12712563	Missense_Mutation	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	9472058	12712563	142557997	178	8508											
ATXN3L	92552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13337139	13337139	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATXN3L	NM_001135995	exon1	c.C915A	p.G305G	ACTGTGGCCCGGC	.	457	213	141	0	.	542	T	13337139	G	T	13337139	2	4	58	1	0	0	0	0	0	0	0	1	1214	1190	42	3		3	ATXN3L	23	13337139	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	624576	13337139	141933421	179	8509											
SCML1	6322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17768332	17768332	+	Missense_Mutation	SNP	G	G	T	rs199560760	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SCML1	NM_001037540	exon6	c.G622T	p.G208W	TCTTCAGGGCTCT	.	173	58	77	0	G|1.000;A|0.000	290	T	17768332	G	T	17768332	3	4	58	1	0	0	0	0	1	0	0	0	13909	1000	35	3	643	3	SCML1	23	17768332	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	4431193	17768332	137502228	180	8510											
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27998516	27998516	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DCAF8L1	NM_001017930	exon1	c.C936T	p.F312F	AATGGTGAACACA	.	183	59	64	0	.	112	A	27998516	G	A	27998516	2	1	58	1	0	0	0	0	0	0	0	1	4277	1281	45	3		3	DCAF8L1	23	27998516	Silent	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	10230184	27998516	127272044	181	8511											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31200854	31200854	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DMD	NM_004016	exon8	c.770+1G>T	.	CTAATACCTGAAT	.	151	57	75	0	.	265	A	31200854	C	A	31200854	5	1	58	1	0	0	0	0	0	0	1	0	4580	521	18	3	1220	3	DMD	23	31200854	Splice_Site	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	3202338	31200854	124069706	182	8512											
CASK	8573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41428985	41428985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CASK	NM_001126054	exon16	c.A1518G	p.K506K	ATTCATTTTTAAA	.	411	162	137	0	.	616	C	41428985	T	C	41428985	2	2	58	1	0	0	0	0	0	0	0	1	2665	1838	64	2		2	CASK	23	41428985	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	10228131	41428985	113841575	183	8513											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	43652777	43652777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAOB	NM_000898	exon8	c.C817A	p.H273N	TGAAGTGAATCTT	.	461	152	142	0	.	555	T	43652777	G	T	43652777	3	4	58	1	0	0	0	0	1	0	0	0	9226	1290	45	3	777	3	MAOB	23	43652777	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	2223792	43652777	111617783	184	8514											
ARHGEF9	23229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62926264	62926264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF9	NM_015185	exon3	c.C255A	p.D85E	ATTGGGGTCCAGG	.	102	45	49	0	.	233	T	62926264	G	T	62926264	3	4	58	1	0	0	0	0	1	0	0	0	912	1252	44	3	1327	3	ARHGEF9	23	62926264	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	19273487	62926264	92344296	185	8515											
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70316754	70316754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FOXO4	NM_005938	exon1	c.C376G	p.Q126E	CTTGCCCAGATCT	.	283	115	91	0	.	986	G	70316754	C	G	70316754	3	3	58	1	0	0	0	0	1	0	0	0	6025	595	21	4	378	4	FOXO4	23	70316754	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	7390490	70316754	84953806	186	8516											
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	89177576	89177576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TGIF2LX	NM_138960	exon2	c.G492T	p.K164N	GCCAAAGGGCCAG	.	165	65	68	0	.	92	T	89177576	G	T	89177576	3	4	58	1	0	0	0	0	1	0	0	0	15824	991	35	3	494	3	TGIF2LX	23	89177576	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	18860822	89177576	66092984	187	8517											
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107807134	107807134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL4A5	NM_000495	exon4	c.C254A	p.P85Q	CAGGGCCACCAGG	.	498	220	148	0	.	133	A	107807134	C	A	107807134	3	1	58	1	0	0	0	0	1	0	0	0	3694	594	21	3	268	3	COL4A5	23	107807134	Missense_Mutation	SNP	C	TCGA-DD-A1EB-01A-11D-A12Z-10	18629558	107807134	47463426	188	8518											
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135487872	135487872	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR112	NM_153834	exon23	c.T8676C	p.S2892S	TGATTCTATCTTT	.	487	173	143	0	.	183	C	135487872	T	C	135487872	2	2	58	1	0	0	0	0	0	0	0	1	6629	1509	53	2		2	GPR112	23	135487872	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	27680738	135487872	19782688	189	8519											
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135582923	135582923	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HTATSF1	NM_001163280	exon5	c.T516G	p.L172L	CAAACTTTACAAA	.	579	246	155	0	.	132	G	135582923	T	G	135582923	2	3	58	1	0	0	0	0	0	0	0	1	7433	1828	64	5		5	HTATSF1	23	135582923	Silent	SNP	T	TCGA-DD-A1EB-01A-11D-A12Z-10	95051	135582923	19687637	190	8520											
VGLL1	51442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	135618180	135618180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VGLL1	NM_016267	exon2	c.A1G	p.M1V	CTCACAATGGAAG	.	46	23	32	0	.	130	G	135618180	A	G	135618180	3	3	58	1	0	0	0	0	1	0	0	0	17155	101	4	2	3	2	VGLL1	23	135618180	Missense_Mutation	SNP	A	TCGA-DD-A1EB-01A-11D-A12Z-10	35257	135618180	19652380	191	8521											
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135767930	135767930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF6	NM_004840	exon12	c.C1298G	p.S433C	GGTTCGGACAGTA	.	320	118	103	0	.	227	C	135767930	G	C	135767930	3	2	58	1	0	0	0	0	1	0	0	0	910	1174	41	4	1076	4	ARHGEF6	23	135767930	Missense_Mutation	SNP	G	TCGA-DD-A1EB-01A-11D-A12Z-10	149750	135767930	19502630	192	8522											
GPN2	54707	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	27210697	27210697	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	GPN2	NM_018066	exon4	c.G814T	p.E272X	TGGCTTCCAAGCT	.	127	17	137	0	.	90	A	27210697	C	A	27210697	4	1	59	1	0	0	0	0	0	1	0	0	6618	864	30	3	126	3	GPN2	1	27210697	Nonsense_Mutation	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10		27210697	222039924	1	8523											
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67795378	67795378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	IL12RB2	NM_001559	exon6	c.G773C	p.R258T	GACTCAGATATCG	.	142	23	150	0	.	92	C	67795378	G	C	67795378	3	2	59	1	0	0	0	0	1	0	0	0	7627	942	33	4	791	4	IL12RB2	1	67795378	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	40584681	67795378	181455243	2	8524											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144859947	144859947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	PDE4DIP	NM_014644	exon38	c.A6137G	p.H2046R	ACCAGGTGGCTCA	.	305	29	242	0	.	663	C	144859947	T	C	144859947	3	2	59	1	0	0	0	0	1	0	0	0	11643	1696	59	2	931	2	PDE4DIP	1	144859947	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10	77064569	144859947	104390674	3	8525											
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206730943	206730943	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	RASSF5	NM_182665	exon1	c.G42T	p.L14L	CAGCCTGGACGAG	.	122	18	97	0	.	660	T	206730943	G	T	206730943	2	4	59	1	0	0	0	0	0	0	0	1	13089	1335	47	3		3	RASSF5	1	206730943	Silent	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	61870996	206730943	42519678	4	8526											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	32692803	32692803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	BIRC6	NM_016252	exon27	c.T5567C	p.M1856T	GATTCATGAAGGT	.	123	22	129	0	.	233	C	32692803	T	C	32692803	3	2	59	1	0	0	0	0	1	0	0	0	1438	1464	51	2	5673	2	BIRC6	2	32692803	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10		32692803	210506570	5	8527											
LONRF2	164832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100906810	100906810	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	LONRF2	NM_198461	exon10	c.C1830T	p.D610D	AATCGCGTCTACA	.	165	29	170	0	.	154	A	100906810	G	A	100906810	2	1	59	1	0	0	0	0	0	0	0	1	8895	1136	40	1		1	LONRF2	2	100906810	Silent	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	68214007	100906810	142292563	6	8528											
FARSB	10056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223505623	223505623	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	FARSB	NM_005687	exon4	c.A297T	p.V99V	AGGCATTACCCGT	.	329	54	633	0	.	91	A	223505623	T	A	223505623	2	1	59	1	0	0	0	0	0	0	0	1	5680	1741	61	4		4	FARSB	2	223505623	Silent	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10	122598813	223505623	19693750	7	8529											
MST1	4485	broad.mit.edu;bcgsc.ca	37	3	49722762	49722762	+	Missense_Mutation	SNP	G	G	A	rs150169514		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	MST1	NM_020998	exon13	c.C1477T	p.R493C	TGGAACGCCGCTG	.	142	30	144	1	G|1.000;A|0.000	278	A	49722762	G	A	49722762	3	1	59	1	0	0	0	0	1	0	0	0	9890	1087	38	1	724	1	MST1	3	49722762	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10		49722762	148299668	8	8530											
DNAH12	201625	broad.mit.edu;bcgsc.ca	37	3	57391597	57391597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	DNAH12	NM_178504	exon41	c.T6302C	p.V2101A	CGGATGACGCGTG	.	105	5	94	0	.	47	G	57391597	A	G	57391597	3	3	59	1	0	0	0	0	1	0	0	0	4600	275	10	2	3052	2	DNAH12	3	57391597	Missense_Mutation	SNP	A	TCGA-DD-A1EC-01A-21D-A12Z-10	7668835	57391597	140630833	9	8531											
CADPS	8618	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62484884	62484884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	CADPS	NM_183394	exon18	c.G2710A	p.E904K	CTAGTTCAGCAAG	.	294	75	272	1	.	281	T	62484884	C	T	62484884	3	4	59	1	0	0	0	0	1	0	0	0	2570	835	29	3	1454	3	CADPS	3	62484884	Missense_Mutation	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10	5093287	62484884	135537546	10	8532											
MCM2	4171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127323594	127323594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	MCM2	NM_004526	exon3	c.G380C	p.G127A	GCCGGGGCCTGGG	.	69	10	41	0	.	230	C	127323594	G	C	127323594	3	2	59	1	0	0	0	0	1	0	0	0	9386	1203	42	4	390	4	MCM2	3	127323594	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	64838710	127323594	70698836	11	8533											
CCNL1	57018	ucsc.edu;bcgsc.ca	37	3	156866183	156866183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	CCNL1	NM_020307	exon11	c.C1428A	p.S476R	AGACTTGCTCTGA	.	177	31	213	2	.	659	T	156866183	G	T	156866183	3	4	59	1	0	0	0	0	1	0	0	0	2931	1310	46	3	156	3	CCNL1	3	156866183	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	29542589	156866183	41156247	12	8534											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138451498	138451498	+	Missense_Mutation	SNP	C	C	T	rs200753356		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	PCDH18,NS,NS,0	PCDH18	NM_019035	exon1	c.G1745A	p.R582H	TTATTACGCAATG	.	325	55	278	0	C|0.999;T|0.000	185	T	138451498	C	T	138451498	3	4	59	1	0	0	0	0	1	0	0	0	11513	536	19	1	1678	1	PCDH18	4	138451498	Missense_Mutation	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10		138451498	52702778	13	8535											
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160225597	160225597	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	RAPGEF2	NM_014247	exon2	c.G164C	p.G55A	ATTCTGGGAGCAG	.	389	51	423	0	.	637	C	160225597	G	C	160225597	3	2	59	1	0	0	0	0	1	0	0	0	13044	1232	43	4	170	4	RAPGEF2	4	160225597	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	21774099	160225597	30928679	14	8536											
PCDHA12	56137	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140255564	140255564	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	.	NM_018903	exon1	c.C507G	p.T169T	TTTGACCTATGCG	.	70	6	86	0	.	.	G	140255564	C	G	140255564	2	3	59	1	0	0	0	0	0	0	0	1	11522	668	24	4		4	PCDHA12	5	140255564	Silent	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10		140255564	40659696	15	8537											
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4799104	4799104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	FOXK1	NM_001037165	exon7	c.T1574G	p.V525G	CCATGGTCAGGGT	.	74	10	29	0	.	516	G	4799104	T	G	4799104	3	3	59	1	0	0	0	0	1	0	0	0	6014	1667	58	5	1600	5	FOXK1	7	4799104	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10		4799104	154339559	16	8538											
TTLL11	158135	ucsc.edu;bcgsc.ca	37	9	124752033	124752033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	TTLL11	NM_001139442	exon4	c.A980G	p.D327G	TCATCGTCTTTCA	.	49	5	53	0	.	112	C	124752033	T	C	124752033	3	2	59	1	0	0	0	0	1	0	0	0	16721	1667	58	2	1524	2	TTLL11	9	124752033	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10		124752033	16461398	17	8539											
SUPV3L1	6832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70951452	70951452	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	SUPV3L1	NM_003171	exon6	c.A783G	p.T261T	TGTGACAGTTCAG	.	336	53	451	0	.	227	G	70951452	A	G	70951452	2	3	59	1	0	0	0	0	0	0	0	1	15399	175	7	2		2	SUPV3L1	10	70951452	Silent	SNP	A	TCGA-DD-A1EC-01A-21D-A12Z-10		70951452	64583295	18	8540											
LIPN	643418	broad.mit.edu;bcgsc.ca	37	10	90522021	90522021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	.	NM_001102469	exon2	c.T185C	p.V62A	TCCTTGTCAACAG	.	91	5	102	0	.	.	C	90522021	T	C	90522021	3	2	59	1	0	0	0	0	1	0	0	0	8828	1667	58	2	191	2	LIPN	10	90522021	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10	19570569	90522021	45012726	19	8541											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88508195	88508195	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	CEP290	NM_025114	exon21	c.2052+2T>G	.	TAACTTACATTAA	.	109	31	201	0	.	96	C	88508195	A	C	88508195	5	2	59	1	0	0	0	0	0	0	1	0	3253	405	14	5	5525	5	CEP290	12	88508195	Splice_Site	SNP	A	TCGA-DD-A1EC-01A-21D-A12Z-10		88508195	45343700	20	8542											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32912486	32912486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	BRCA2	NM_000059	exon11	c.C3994T	p.H1332Y	AATTCTCATAACT	.	124	26	160	0	.	3153	T	32912486	C	T	32912486	3	4	59	1	0	0	0	0	1	0	0	0	1499	826	29	3	4032	3	BRCA2	13	32912486	Missense_Mutation	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10		32912486	82257392	21	8543											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98670928	98670928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	IPO5	NM_002271	exon26	c.G2860A	p.G954S	CAGTACGGTGGAG	.	184	38	151	0	.	228	A	98670928	G	A	98670928	3	1	59	1	0	0	0	0	1	0	0	0	7796	1116	39	1	2954	1	IPO5	13	98670928	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	65758442	98670928	16498950	22	8544											
GPR68	8111	ucsc.edu;bcgsc.ca	37	14	91700519	91700519	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	GPR68	NM_001177676	exon2	c.C876A	p.T292T	GTGGGTGGTCTCG	.	32	4	23	0	.	91	T	91700519	G	T	91700519	2	4	59	1	0	0	0	0	0	0	0	1	6707	1335	47	3		3	GPR68	14	91700519	Silent	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10		91700519	15649021	23	8545											
ZNF267	10308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31925948	31925948	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	ZNF267	NM_003414	exon4	c.T378C	p.N126N	GCACAATGGATGT	.	148	28	158	0	.	138	C	31925948	T	C	31925948	2	2	59	1	0	0	0	0	0	0	0	1	17803	1461	51	2		2	ZNF267	16	31925948	Silent	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10		31925948	58428805	24	8546											
GPR114	221188	broad.mit.edu;bcgsc.ca	37	16	57601900	57601900	+	Silent	SNP	C	C	T	rs201435952		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	GPR114	NM_153837	exon9	c.C954T	p.A318A	TCTGGCCGCTGCC	.	86	5	122	0	C|0.999;T|0.000	90	T	57601900	C	T	57601900	2	4	59	1	0	0	0	0	0	0	0	1	6631	639	23	1		1	GPR114	16	57601900	Silent	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10	25675952	57601900	32752853	25	8547											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46262096	46262096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	SKAP1	NM_003726	exon7	c.C556T	p.R186C	AGCTGCGCCTATC	.	128	26	138	0	.	90	A	46262096	G	A	46262096	3	1	59	1	0	0	0	0	1	0	0	0	14355	1087	38	1	547	1	SKAP1	17	46262096	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10		46262096	34933114	26	8548											
BPTF	2186	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65905845	65905845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	BPTF	NM_004459	exon12	c.A3338G	p.D1113G	AAATGGATATCTC	.	144	23	147	1	.	94	G	65905845	A	G	65905845	3	3	59	1	0	0	0	0	1	0	0	0	1495	333	12	2	3384	2	BPTF	17	65905845	Missense_Mutation	SNP	A	TCGA-DD-A1EC-01A-21D-A12Z-10	19643749	65905845	15289365	27	8549											
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72367888	72367888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	GPR142	NM_181790	exon4	c.G538A	p.A180T	GCAGTGGCCCTGG	.	47	10	44	0	.	93	A	72367888	G	A	72367888	3	1	59	1	0	0	0	0	1	0	0	0	6650	1203	42	3	552	3	GPR142	17	72367888	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10	6462043	72367888	8827322	28	8550											
FBF1	85302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73918105	73918105	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	FBF1	NM_001080542	exon14	c.G1402C	p.G468R	CAAGCCCTTGTGT	.	108	20	120	0	.	205	G	73918105	C	G	73918105	3	3	59	1	0	0	0	0	1	0	0	0	5695	681	24	4	2063	4	FBF1	17	73918105	Missense_Mutation	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10	1550217	73918105	7277105	29	8551											
DOCK6	57572	ucsc.edu;bcgsc.ca	37	19	11322782	11322782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	DOCK6	NM_020812	exon36	c.C4537A	p.L1513M	CCACCAGGGACGA	.	31	4	50	0	.	93	T	11322782	G	T	11322782	3	4	59	1	0	0	0	0	1	0	0	0	4691	991	35	3	1658	3	DOCK6	19	11322782	Missense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10		11322782	47806201	30	8552											
SPTBN4	57731	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41056209	41056209	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	SPTBN4	NM_020971	exon22	c.C4650A	p.V1550V	GGCGGTCCAGCAG	.	58	7	50	0	.	94	A	41056209	C	A	41056209	2	1	59	1	0	0	0	0	0	0	0	1	15120	842	30	3		3	SPTBN4	19	41056209	Silent	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10	29733427	41056209	18072774	31	8553											
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50912834	50912834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	POLD1	NM_002691	exon17	c.C2065T	p.R689W	GATGGACGGCAGC	.	154	27	138	0	.	840	T	50912834	C	T	50912834	3	4	59	1	0	0	0	0	1	0	0	0	12190	527	19	1	2127	1	POLD1	19	50912834	Missense_Mutation	SNP	C	TCGA-DD-A1EC-01A-21D-A12Z-10	9856625	50912834	8216149	32	8554											
XKR7	343702	hgsc.bcm.edu;mdanderson.org	37	20	30585125	30585125	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	XKR7	NM_001011718	exon3	c.G1605A	p.W535X	GGCCTGGGATGCT	.	22	7	37	0	.	137	A	30585125	G	A	30585125	4	1	59	1	0	0	0	0	0	1	0	0	17433	1241	43	3	1615	3	XKR7	20	30585125	Nonsense_Mutation	SNP	G	TCGA-DD-A1EC-01A-21D-A12Z-10		30585125	32440395	33	8555											
B4GALT5	9334	broad.mit.edu;bcgsc.ca	37	20	48256272	48256272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	B4GALT5	NM_004776	exon7	c.A860G	p.N287S	AAGCCATTGATTT	.	134	6	161	0	.	91	C	48256272	T	C	48256272	3	2	59	1	0	0	0	0	1	0	0	0	1274	1493	52	2	318	2	B4GALT5	20	48256272	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10	17671147	48256272	14769248	34	8556											
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26176106	26176106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EC-01A-21D-A12Z-10	TCGA-DD-A1EC-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b9bbd66-c9e2-4d37-ba06-3137ad936c06	f5663abe-78b9-4a8e-925d-e5a08d29c2ff	.	MYO18B	NM_032608	exon9	c.T2152C	p.S718P	CGGTTCTCCATGG	.	39	4	61	0	.	142	C	26176106	T	C	26176106	3	2	59	1	0	0	0	0	1	0	0	0	10066	1551	54	2	2182	2	MYO18B	22	26176106	Missense_Mutation	SNP	T	TCGA-DD-A1EC-01A-21D-A12Z-10		26176106	25128460	35	8557											
TTC4	7268	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	55182348	55182348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TTC4	NM_004623	exon2	c.T187C	p.C63R	TTGGCTTGTCTCC	.	46	5	75	0	.	21	C	55182348	T	C	55182348	3	2	60	1	0	0	0	0	1	0	0	0	16707	1812	63	2	193	2	TTC4	1	55182348	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		55182348	194068273	1	8558											
CEPT1	10390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	111702071	111702071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEPT1	NM_006090	exon3	c.G409T	p.G137W	ATTGATGGGAAAC	.	273	11	345	0	.	25	T	111702071	G	T	111702071	3	4	60	1	0	0	0	0	1	0	0	0	3264	1348	47	3	415	3	CEPT1	1	111702071	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	56519723	111702071	137548550	2	8559											
GPR161	23432	hgsc.bcm.edu;bcgsc.ca	37	1	168066409	168066409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPR161	NM_001267609	exon4	c.A496G	p.M166V	GTGCCATCACAGC	.	72	4	102	0	.	56	C	168066409	T	C	168066409	3	2	60	1	0	0	0	0	1	0	0	0	6665	1435	50	2	1169	2	GPR161	1	168066409	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	56364338	168066409	81184212	3	8560											
CEP350	9857	hgsc.bcm.edu;bcgsc.ca	37	1	180062484	180062484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP350	NM_014810	exon34	c.A7244G	p.K2415R	GAGATAAGCCACA	.	149	6	214	0	.	418	G	180062484	A	G	180062484	3	3	60	1	0	0	0	0	1	0	0	0	3254	72	3	2	7374	2	CEP350	1	180062484	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	11996075	180062484	69188137	4	8561											
C1orf131	128061	hgsc.bcm.edu;bcgsc.ca	37	1	231360124	231360124	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C1orf131	NM_152379	exon7	c.A783G	p.S261S	TCCATTTGACAAA	.	165	9	220	0	.	30	C	231360124	T	C	231360124	2	2	60	1	0	0	0	0	0	0	0	1	1998	1799	63	2		2	C1orf131	1	231360124	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	51297640	231360124	17890497	5	8562											
MFSD2B	388931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	24236185	24236185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MFSD2B	NM_001080473	exon2	c.A127G	p.T43A	TTCTGTACAAAGG	.	41	4	75	0	.	45	G	24236185	A	G	24236185	3	3	60	1	0	0	0	0	1	0	0	0	9531	391	14	2	133	2	MFSD2B	2	24236185	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10		24236185	218963188	6	8563											
ABHD1	84696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27351823	27351823	+	Missense_Mutation	SNP	C	C	A	rs370556895	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ABHD1	NM_032604	exon3	c.C286A	p.Q96K	ATCCTCCAAACAC	.	71	8	103	0	.	18	A	27351823	C	A	27351823	3	1	60	1	0	0	0	0	1	0	0	0	73	595	21	3	296	3	ABHD1	2	27351823	Missense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	3115638	27351823	215847550	7	8564											
ZNF2	7549	hgsc.bcm.edu;bcgsc.ca	37	2	95843262	95843262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF2	NM_021088	exon3	c.T68C	p.F23S	TGGTTTTCACAGA	.	80	5	153	0	.	21	C	95843262	T	C	95843262	3	2	60	1	0	0	0	0	1	0	0	0	17757	1783	62	2	74	2	ZNF2	2	95843262	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	68491439	95843262	147356111	8	8565											
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187693106	187693106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZSWIM2	NM_182521	exon9	c.G1507T	p.V503L	ATGACACAGTGGG	.	188	25	238	0	.	119	A	187693106	C	A	187693106	3	1	60	1	0	0	0	0	1	0	0	0	18238	478	17	3	398	3	ZSWIM2	2	187693106	Missense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	91849844	187693106	55506267	9	8566											
MAP2	4133	broad.mit.edu;bcgsc.ca	37	2	210560370	210560370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAP2	NM_002374	exon7	c.C3476G	p.S1159C	AATCATCTCTAAT	.	176	0	143	1	.	591	G	210560370	C	G	210560370	3	3	60	1	0	0	0	0	1	0	0	0	9235	913	32	4	3490	4	MAP2	2	210560370	Missense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	22867264	210560370	32639003	10	8567											
INHA	3623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220439447	220439447	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	INHA	NM_002191	exon2	c.A300G	p.R100R	TGCCAGAGGGCTG	.	78	4	113	0	.	30	G	220439447	A	G	220439447	2	3	60	1	0	0	0	0	0	0	0	1	7740	301	11	2		2	INHA	2	220439447	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	9879077	220439447	22759926	11	8568											
THUMPD3	25917	hgsc.bcm.edu;bcgsc.ca	37	3	9425958	9425958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	THUMPD3	NM_001114092	exon9	c.T1298C	p.V433A	GCCGTGTCTGCAC	.	82	4	145	0	.	46	C	9425958	T	C	9425958	3	2	60	1	0	0	0	0	1	0	0	0	15881	1667	58	2	1328	2	THUMPD3	3	9425958	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		9425958	188596472	12	8569											
SLC6A1	6529	hgsc.bcm.edu;bcgsc.ca	37	3	11072874	11072874	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC6A1	NM_003042	exon13	c.T1335C	p.Y445Y	TATTTATGTCTTC	.	92	5	144	0	.	88	C	11072874	T	C	11072874	2	2	60	1	0	0	0	0	0	0	0	1	14673	1471	51	2		2	SLC6A1	3	11072874	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	1646916	11072874	186949556	13	8570											
CTNNB1	1499	hgsc.bcm.edu;bcgsc.ca	37	3	41266610	41266610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CTNNB1	NM_001098209	exon4	c.T407C	p.V136A	ATGCAGTTGTAAA	.	69	12	77	0	.	4904	C	41266610	T	C	41266610	3	2	60	1	0	0	0	0	1	0	0	0	4016	1725	60	2	417	2	CTNNB1	3	41266610	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	30193736	41266610	156755820	14	8571											
SACM1L	22908	hgsc.bcm.edu;bcgsc.ca	37	3	45744960	45744960	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SACM1L	NM_014016	exon2	c.A63G	p.E21E	TGTGGAAGCTTGT	.	81	4	137	0	.	38	G	45744960	A	G	45744960	2	3	60	1	0	0	0	0	0	0	0	1	13803	69	3	2		2	SACM1L	3	45744960	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	4478350	45744960	152277470	15	8572											
GRM2	2912	broad.mit.edu;bcgsc.ca	37	3	51749655	51749664	+	Frame_Shift_Del	DEL	CTTCATTGCC	CTTCATTGCC	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	CTTCATTGCC	CTTCATTGCC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GRM2	NM_000839	exon4	c.1866_1875del	p.622_625del	CTTCATCTTCATT	.	220	0	200	0	.	522	-	51749664	CTTCATTGCC	-	51749655	7	5	60	1	0	1	0	1	0	0	0	0	6797	903	32	0	1876	0	GRM2	3	51749655	Frame_Shift_Del	DEL	CTTCATTGCC	TCGA-DD-A1ED-01A-11D-A152-10	6004695	51749655	146272775	16	8573											
ARF4	378	hgsc.bcm.edu;bcgsc.ca	37	3	57563094	57563094	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ARF4	NM_001660	exon4	c.T279C	p.D93D	GTTGCTATCTACC	.	90	4	175	0	.	14	G	57563094	A	G	57563094	2	3	60	1	0	0	0	0	0	0	0	1	846	446	16	2		2	ARF4	3	57563094	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	5813439	57563094	140459336	17	8574											
CEP97	79598	hgsc.bcm.edu;bcgsc.ca	37	3	101445525	101445525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP97	NM_024548	exon2	c.A131G	p.D44G	TTCTGGATAAAAA	.	73	4	95	0	.	122	G	101445525	A	G	101445525	3	3	60	1	0	0	0	0	1	0	0	0	3263	333	12	2	137	2	CEP97	3	101445525	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	43882431	101445525	96576905	18	8575											
ASTE1	28990	hgsc.bcm.edu;bcgsc.ca	37	3	130733158	130733158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASTE1	NM_014065	exon6	c.A1783G	p.S595G	ATATGCTCAGGAG	.	121	5	225	0	.	67	C	130733158	T	C	130733158	3	2	60	1	0	0	0	0	1	0	0	0	1062	1551	54	2	260	2	ASTE1	3	130733158	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	29287633	130733158	67289272	19	8576											
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134270832	134270832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP63	NM_025180	exon13	c.A1445G	p.K482R	TGATGAAATTGGA	.	56	4	90	0	.	56	G	134270832	A	G	134270832	3	3	60	1	0	0	0	0	1	0	0	0	3257	14	1	2	1487	2	CEP63	3	134270832	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	3537674	134270832	63751598	20	8577											
PIK3CA	5290	hgsc.bcm.edu;bcgsc.ca	37	3	178943817	178943817	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PIK3CA	NM_006218	exon17	c.T2484C	p.G828G	TCAAGGTCTTGAT	.	75	4	142	0	.	8460	C	178943817	T	C	178943817	2	2	60	1	0	0	0	0	0	0	0	1	11913	1654	58	2		2	PIK3CA	3	178943817	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	44672985	178943817	19078613	21	8578											
ZNF639	51193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	179051221	179051221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF639	NM_016331	exon7	c.A469G	p.N157D	ACAGAAAACAATT	.	152	7	230	0	.	45	G	179051221	A	G	179051221	3	3	60	1	0	0	0	0	1	0	0	0	18053	14	1	2	483	2	ZNF639	3	179051221	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	107404	179051221	18971209	22	8579											
HHIP	64399	hgsc.bcm.edu;bcgsc.ca	37	4	145636456	145636456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HHIP	NM_022475	exon10	c.T1552C	p.F518L	AGGAATTTCCTAA	.	95	5	131	0	.	100	C	145636456	T	C	145636456	3	2	60	1	0	0	0	0	1	0	0	0	7092	1841	64	2	1590	2	HHIP	4	145636456	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		145636456	45517820	23	8580											
LRBA	987	hgsc.bcm.edu;bcgsc.ca	37	4	151773447	151773447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRBA	NM_006726	exon23	c.T3415C	p.S1139P	CTTCAGATGCAGC	.	141	6	186	0	.	253	G	151773447	A	G	151773447	3	3	60	1	0	0	0	0	1	0	0	0	8931	333	12	2	5320	2	LRBA	4	151773447	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	6136991	151773447	39380829	24	8581											
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	52402917	52402917	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MOCS2	NM_004531	exon3	c.G88T	p.E30X	ATGGCTCAAAAGC	.	58	12	91	0	.	28	A	52402917	C	A	52402917	4	1	60	1	0	0	0	0	0	1	0	0	9691	835	29	3	498	3	MOCS2	5	52402917	Nonsense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10		52402917	128512343	25	8582											
IL6ST	3572	broad.mit.edu;bcgsc.ca	37	5	55260061	55260075	+	In_Frame_Del	DEL	AATACACAGTAGAAT	AATACACAGTAGAAT	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	AATACACAGTAGAAT	AATACACAGTAGAAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IL6ST	NM_175767	exon6	c.557_571del	p.186_191del	TGACAAAATACAC	.	299	0	326	0	.	290	-	55260075	AATACACAGTAGAAT	-	55260061	7	5	60	1	0	1	0	1	0	0	0	0	7703	14	1	0	2233	0	IL6ST	5	55260061	In_Frame_Del	DEL	AATACACAGTAGAAT	TCGA-DD-A1ED-01A-11D-A152-10	2857144	55260061	125655199	26	8583											
SV2C	22987	hgsc.bcm.edu;bcgsc.ca	37	5	75587051	75587051	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SV2C	NM_014979	exon7	c.C1143T	p.N381N	GGTAAACAAAATA	.	113	5	152	0	.	97	T	75587051	C	T	75587051	2	4	60	1	0	0	0	0	0	0	0	1	15416	477	17	3		3	SV2C	5	75587051	Silent	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	20326990	75587051	105328209	27	8584											
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	93076777	93076777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	POU5F2	NM_153216	exon1	c.T493G	p.C165G	AGCGGCAGATGGT	.	45	7	71	0	.	10	C	93076777	A	C	93076777	3	2	60	1	0	0	0	0	1	0	0	0	12283	188	7	5	497	5	POU5F2	5	93076777	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	17489726	93076777	87838483	28	8585											
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	93964624	93964624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ANKRD32	NM_032290	exon2	c.A109G	p.S37G	ATTAAGAGTGAGG	.	83	4	103	0	.	117	G	93964624	A	G	93964624	3	3	60	1	0	0	0	0	1	0	0	0	660	304	11	2	111	2	ANKRD32	5	93964624	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	887847	93964624	86950636	29	8586											
FBN2	2201	hgsc.bcm.edu;bcgsc.ca	37	5	127712455	127712455	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBN2	NM_001999	exon14	c.T1941C	p.F647F	CAAGACAAATCCT	.	85	4	160	0	.	858	G	127712455	A	G	127712455	2	3	60	1	0	0	0	0	0	0	0	1	5703	127	5	2		2	FBN2	5	127712455	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	33747831	127712455	53202805	30	8587											
FNIP1	96459	broad.mit.edu;bcgsc.ca	37	5	131008597	131008597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FNIP1	NM_133372	exon14	c.G1540A	p.G514S	GAGAGCCAATAGC	.	66	0	98	0	.	92	T	131008597	C	T	131008597	3	4	60	1	0	0	0	0	1	0	0	0	5975	594	21	3	1980	3	FNIP1	5	131008597	Missense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	3296142	131008597	49906663	31	8588											
ROS1	6098	hgsc.bcm.edu;bcgsc.ca	37	6	117718268	117718268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ROS1	NM_002944	exon7	c.G589A	p.A197T	AAGGTGCAGTTTC	.	96	4	158	0	.	728	T	117718268	C	T	117718268	3	4	60	1	0	0	0	0	1	0	0	0	13531	710	25	3	6602	3	ROS1	6	117718268	Missense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10		117718268	53396799	32	8589											
SSPO	23145	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	149500388	149500388	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_198455	exon53	c.C7914T	p.S2638S	ACCCTCCTGCCTG	.	39	5	48	0	.	.	T	149500388	C	T	149500388	2	4	60	1	0	0	0	0	0	0	0	1	15188	668	24	3		3	SSPO	7	149500388	Silent	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10		149500388	9638275	33	8590											
ANGPT2	285	hgsc.bcm.edu;bcgsc.ca	37	8	6420324	6420324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ANGPT2	NM_001118888	exon1	c.T132C	p.T44T	GAGGAAAGTGTAG	.	92	4	195	0	.	126	G	6420324	A	G	6420324	2	3	60	1	0	0	0	0	0	0	0	1	611	59	3	2		2	ANGPT2	8	6420324	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10		6420324	139943698	34	8591											
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	86022370	86022370	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRRCC1	NM_033402	exon3	c.C331T	p.L111L	ATTAATCTGACTA	.	107	22	123	0	.	212	T	86022370	C	T	86022370	2	4	60	1	0	0	0	0	0	0	0	1	9026	912	32	3		3	LRRCC1	8	86022370	Silent	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	79602046	86022370	60341652	35	8592											
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13150535	13150535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MPDZ	NM_003829	exon25	c.T3605C	p.L1202S	GGTTTCAAGGTTC	.	89	5	157	0	.	324	G	13150535	A	G	13150535	3	3	60	1	0	0	0	0	1	0	0	0	9722	131	5	2	2608	2	MPDZ	9	13150535	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10		13150535	128062896	36	8593											
TMC1	117531	hgsc.bcm.edu;bcgsc.ca	37	9	75403363	75403363	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMC1	NM_138691	exon14	c.A993G	p.A331A	AACAGCAGACAAC	.	90	4	122	0	.	87	G	75403363	A	G	75403363	2	3	60	1	0	0	0	0	0	0	0	1	15981	175	7	2		2	TMC1	9	75403363	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	62252828	75403363	65810068	37	8594											
CUBN	8029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	17024537	17024537	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUBN	NM_001081	exon31	c.T4641C	p.R1547R	GAGAACACGATGA	.	58	7	87	0	.	515	G	17024537	A	G	17024537	2	3	60	1	0	0	0	0	0	0	0	1	4051	146	6	2		2	CUBN	10	17024537	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10		17024537	118510210	38	8595											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17153015	17153015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUBN	NM_001081	exon9	c.C918G	p.I306M	TTCATTGATATCT	.	65	11	109	0	.	515	C	17153015	G	C	17153015	3	2	60	1	0	0	0	0	1	0	0	0	4051	1280	45	4	10189	4	CUBN	10	17153015	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	128478	17153015	118381732	39	8596											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3720345	3720345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NUP98	NM_016320	exon25	c.A3976G	p.I1326V	CACTGATCCTTTT	.	94	8	139	0	.	149	C	3720345	T	C	3720345	3	2	60	1	0	0	0	0	1	0	0	0	10773	1435	50	2	1462	2	NUP98	11	3720345	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		3720345	131286171	40	8597											
EIF4G2	1982	broad.mit.edu;ucsc.edu	37	11	10825934	10825934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	EIF4G2	NM_001042559	exon6	c.A383G	p.Y128C	GAGCTATACTTTG	.	180	0	183	0	.	91	C	10825934	T	C	10825934	3	2	60	1	0	0	0	0	1	0	0	0	5037	1406	49	2	2408	2	EIF4G2	11	10825934	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	7105589	10825934	124180582	41	8598											
METTL12	751071	hgsc.bcm.edu;bcgsc.ca	37	11	62434058	62434058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	METTL12	NM_001043229	exon3	c.T258C	p.T86T	TGGGACTTCCAGC	.	77	5	87	0	.	11	C	62434058	T	C	62434058	2	2	60	1	0	0	0	0	0	0	0	1	9496	1596	56	2		2	METTL12	11	62434058	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	51608124	62434058	72572458	42	8599											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu	37	12	31604973	31604973	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DENND5B	NM_144973	exon5	c.1531delA	p.T511fs	.	.	126	12	212	0	.	114	-	31604973	A	-	31604973	7	5	60	1	0	1	0	1	0	0	0	0	4437	359	13	0	2362	0	DENND5B	12	31604973	Frame_Shift_Del	DEL	A	TCGA-DD-A1ED-01A-11D-A152-10		31604973	102246922	43	8600											
TUBA1B	10376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49522077	49522077	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TUBA1B	NM_006082	exon4	c.C1020T	p.S340S	CTGGATGCTGCGC	.	182	32	282	0	.	24	A	49522077	G	A	49522077	2	1	60	1	0	0	0	0	0	0	0	1	16741	1310	46	3		3	TUBA1B	12	49522077	Silent	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	17917104	49522077	84329818	44	8601											
PDE1B	5153	ucsc.edu;bcgsc.ca	37	12	54970385	54970385	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PDE1B	NM_000924	exon14	c.G1407A	p.V469V	GGATGTGGAAGTG	.	72	0	73	0	.	92	A	54970385	G	A	54970385	2	1	60	1	0	0	0	0	0	0	0	1	11634	1335	47	3		3	PDE1B	12	54970385	Silent	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	5448308	54970385	78881510	45	8602											
DGKA	1606	hgsc.bcm.edu;bcgsc.ca	37	12	56345833	56345833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DGKA	NM_201554	exon19	c.T1602C	p.A534A	TATTGCTCATCGA	.	73	5	121	0	.	70	C	56345833	T	C	56345833	2	2	60	1	0	0	0	0	0	0	0	1	4465	1538	54	2		2	DGKA	12	56345833	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	1375448	56345833	77506062	46	8603											
ATP5B	506	ucsc.edu;bcgsc.ca	37	12	57038965	57038965	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP5B	NM_001686	exon2	c.C300T	p.A100A	ATGCTGGGCCACC	.	69	0	93	1	.	91	A	57038965	G	A	57038965	2	1	60	1	0	0	0	0	0	0	0	1	1148	1219	43	3		3	ATP5B	12	57038965	Silent	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	693132	57038965	76812930	47	8604											
MED13L	23389	hgsc.bcm.edu;bcgsc.ca	37	12	116413459	116413459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MED13L	NM_015335	exon24	c.G5449A	p.G1817S	CCTCACCAAACGT	.	75	4	138	0	.	193	T	116413459	C	T	116413459	3	4	60	1	0	0	0	0	1	0	0	0	9431	594	21	3	1215	3	MED13L	12	116413459	Missense_Mutation	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	59374494	116413459	17438436	48	8605											
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	53237230	53237230	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SUGT1	NM_001130912	exon8	c.479-1G>C	.	TTAATAGGCTCAG	.	187	16	278	0	.	37	C	53237230	G	C	53237230	5	2	60	1	0	0	0	0	0	0	1	0	15368	1014	35	4	508	4	SUGT1	13	53237230	Splice_Site	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10		53237230	61932648	49	8606											
FARP1	10160	hgsc.bcm.edu;bcgsc.ca	37	13	99063059	99063059	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FARP1	NM_005766	exon15	c.T1674C	p.D558D	GAAGGATCTCGAA	.	148	6	224	0	.	207	C	99063059	T	C	99063059	2	2	60	1	0	0	0	0	0	0	0	1	5676	1432	50	2		2	FARP1	13	99063059	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	45825829	99063059	16106819	50	8607											
SLC10A2	6555	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103698606	103698606	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC10A2	NM_000452	exon6	c.T924C	p.Y308Y	TGCCACATAAACT	.	241	0	235	2	.	94	G	103698606	A	G	103698606	2	3	60	1	0	0	0	0	0	0	0	1	14374	224	8	2		2	SLC10A2	13	103698606	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	4635547	103698606	11471272	51	8608											
CPSF2	53981	hgsc.bcm.edu;bcgsc.ca	37	14	92621560	92621560	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CPSF2	NM_017437	exon11	c.T1335C	p.G445G	GAAAGGTGAAGGC	.	117	5	135	0	.	63	C	92621560	T	C	92621560	2	2	60	1	0	0	0	0	0	0	0	1	3825	1683	59	2		2	CPSF2	14	92621560	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		92621560	14727980	52	8609											
FBN1	2200	hgsc.bcm.edu;bcgsc.ca	37	15	48752514	48752514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBN1	NM_000138	exon43	c.A5225G	p.D1742G	AACTCATCTGCAA	.	72	5	87	0	.	310	C	48752514	T	C	48752514	3	2	60	1	0	0	0	0	1	0	0	0	5702	1449	50	2	3486	2	FBN1	15	48752514	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		48752514	53778878	53	8610											
CYP1A2	1544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75047231	75047231	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CYP1A2	NM_000761	exon7	c.T1353C	p.F451F	GCTGTTTGGCATG	.	64	8	151	0	.	70	C	75047231	T	C	75047231	2	2	60	1	0	0	0	0	0	0	0	1	4150	1809	63	2		2	CYP1A2	15	75047231	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	26294717	75047231	27484161	54	8611											
IDH2	3418	hgsc.bcm.edu;bcgsc.ca	37	15	90628063	90628063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IDH2	NM_002168	exon10	c.T1256C	p.I419T	CCGTGAATGCAGC	.	69	4	87	0	.	1372	G	90628063	A	G	90628063	3	3	60	1	0	0	0	0	1	0	0	0	7495	101	4	2	110	2	IDH2	15	90628063	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	15580832	90628063	11903329	55	8612											
TXNL4B	54957	hgsc.bcm.edu;bcgsc.ca	37	16	72120695	72120695	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TXNL4B	NM_001142318	exon4	c.A291G	p.P97P	GTGATCTGGAGAT	.	109	5	157	0	.	17	C	72120695	T	C	72120695	2	2	60	1	0	0	0	0	0	0	0	1	16803	1567	55	2		2	TXNL4B	16	72120695	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10		72120695	18234058	56	8613											
PLCG2	5336	broad.mit.edu;ucsc.edu	37	16	81819689	81819689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PLCG2	NM_002661	exon2	c.G95A	p.S32N	TGTTCAGCTTCCG	.	104	0	100	0	.	892	A	81819689	G	A	81819689	3	1	60	1	0	0	0	0	1	0	0	0	12036	971	34	3	97	3	PLCG2	16	81819689	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	9698994	81819689	8535064	57	8614											
ZC3H18	124245	hgsc.bcm.edu;bcgsc.ca	37	16	88666240	88666240	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZC3H18	NM_144604	exon6	c.T972C	p.D324D	GCCTGATTTTGAA	.	64	4	106	0	.	90	C	88666240	T	C	88666240	2	2	60	1	0	0	0	0	0	0	0	1	17565	1490	52	2		2	ZC3H18	16	88666240	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	6846551	88666240	1688513	58	8615											
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19705089	19705089	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ULK2	NM_014683	exon17	c.1441+1G>T	.	TACTTACCCAAAG	.	71	8	98	0	.	142	A	19705089	C	A	19705089	5	1	60	1	0	0	0	0	0	0	1	0	16973	521	18	3	1716	3	ULK2	17	19705089	Splice_Site	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10		19705089	61490121	59	8616											
TCAP	8557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37822111	37822111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TCAP	NM_003673	exon2	c.T253C	p.Y85H	CTGCCCTACCAGC	.	43	8	56	0	.	12	C	37822111	T	C	37822111	3	2	60	1	0	0	0	0	1	0	0	0	15663	1522	53	2	259	2	TCAP	17	37822111	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	18117022	37822111	43373099	60	8617											
STXBP4	252983	hgsc.bcm.edu;bcgsc.ca	37	17	53155463	53155463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	STXBP4	NM_178509	exon14	c.A1213G	p.R405G	AAAAAGAGAATCA	.	121	5	154	0	.	41	G	53155463	A	G	53155463	3	3	60	1	0	0	0	0	1	0	0	0	15354	296	11	2	1259	2	STXBP4	17	53155463	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	15333352	53155463	28039747	61	8618											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7016513	7016513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LAMA1	NM_005559	exon21	c.C2966A	p.A989D	TGGTAGGCGTAGA	.	56	10	66	0	.	458	T	7016513	G	T	7016513	3	4	60	1	0	0	0	0	1	0	0	0	8605	1203	42	3	6433	3	LAMA1	18	7016513	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10		7016513	71060735	62	8619											
IMPACT	55364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22029801	22029801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IMPACT	NM_018439	exon10	c.G778A	p.V260I	AAGAATGTCATGG	.	93	11	123	0	.	37	A	22029801	G	A	22029801	3	1	60	1	0	0	0	0	1	0	0	0	7724	1377	48	3	816	3	IMPACT	18	22029801	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	15013288	22029801	56047447	63	8620											
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	29045290	29045290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DSG3	NM_001944	exon10	c.G1281C	p.M427I	TGTCATGGGACGT	.	179	12	277	0	.	172	C	29045290	G	C	29045290	3	2	60	1	0	0	0	0	1	0	0	0	4778	1348	47	4	1319	4	DSG3	18	29045290	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	7015489	29045290	49031958	64	8621											
GPATCH1	55094	hgsc.bcm.edu;bcgsc.ca	37	19	33579153	33579153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPATCH1	NM_018025	exon2	c.A187G	p.N63D	TACTTCAATACTG	.	100	4	200	0	.	79	G	33579153	A	G	33579153	3	3	60	1	0	0	0	0	1	0	0	0	6590	130	5	2	193	2	GPATCH1	19	33579153	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10		33579153	25549830	65	8622											
KIRREL2	84063	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	36350514	36350514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIRREL2	NM_199180	exon5	c.T654C	p.A218A	CACAGCTATCACA	.	40	4	40	0	.	170	C	36350514	T	C	36350514	2	2	60	1	0	0	0	0	0	0	0	1	8325	1509	53	2		2	KIRREL2	19	36350514	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	2771361	36350514	22778469	66	8623											
TEX101	83639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43920572	43920572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TEX101	NM_031451	exon7	c.G310A	p.E104K	GAAGGGGAGGAGG	.	108	17	138	0	.	28	A	43920572	G	A	43920572	3	1	60	1	0	0	0	0	1	0	0	0	15770	1175	41	3	324	3	TEX101	19	43920572	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	7570058	43920572	15208411	67	8624											
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49442937	49442937	+	Missense_Mutation	SNP	G	G	T	rs35453148	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	DHDH,brainstem,primitive_neuroectodermal_tumour-medulloblastoma,0,1	DHDH	NM_014475	exon4	c.G598T	p.V200L	TCTGTCGTGGGAA	.	32	4	52	0	.	35	T	49442937	G	T	49442937	3	4	60	1	0	0	0	0	1	0	0	0	4479	1145	40	1	612	1	DHDH	19	49442937	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	5522365	49442937	9686046	68	8625											
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53384285	53384285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF320	NM_207333	exon4	c.C1094T	p.A365V	CGGAAAGCCTTGT	.	111	5	157	0	.	67	A	53384285	G	A	53384285	3	1	60	1	0	0	0	0	1	0	0	0	17836	971	34	3	439	3	ZNF320	19	53384285	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10	3941348	53384285	5744698	69	8626											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	57027722	57027722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF471	NM_020813	exon3	c.T112G	p.L38V	AAGCGTTTATACA	.	163	16	255	0	.	99	G	57027722	T	G	57027722	3	3	60	1	0	0	0	0	1	0	0	0	17927	1838	64	5	118	5	ZNF471	19	57027722	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	3643437	57027722	2101261	70	8627											
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	30365314	30365314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TPX2	NM_012112	exon9	c.G755T	p.S252I	CAGTGAGCCAGGT	.	81	8	145	0	.	61	T	30365314	G	T	30365314	3	4	60	1	0	0	0	0	1	0	0	0	16429	971	34	3	781	3	TPX2	20	30365314	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10		30365314	32660206	71	8628											
STAU1	6780	ucsc.edu;bcgsc.ca	37	20	47741040	47741040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	STAU1	NM_017453	exon7	c.A694G	p.K232E	TGCTTTTCCCTTC	.	108	0	78	0	.	230	C	47741040	T	C	47741040	3	2	60	1	0	0	0	0	1	0	0	0	15271	1792	62	2	1071	2	STAU1	20	47741040	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	17375726	47741040	15284480	72	8629											
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu	37	20	58342290	58342290	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PHACTR3	NM_080672	exon5	c.C591A	p.L197L	CAGCCTCCTGCCC	.	103	7	145	0	.	104	A	58342290	C	A	58342290	2	1	60	1	0	0	0	0	0	0	0	1	11811	842	30	3		3	PHACTR3	20	58342290	Silent	SNP	C	TCGA-DD-A1ED-01A-11D-A152-10	10601250	58342290	4683230	73	8630											
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25153964	25153964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PIWIL3	NM_001008496	exon4	c.C266T	p.P89L	TGCAAGGGCGCTG	.	95	20	177	0	.	115	A	25153964	G	A	25153964	3	1	60	1	0	0	0	0	1	0	0	0	11959	1232	43	3	2454	3	PIWIL3	22	25153964	Missense_Mutation	SNP	G	TCGA-DD-A1ED-01A-11D-A152-10		25153964	26150602	74	8631											
CNKSR2	22866	hgsc.bcm.edu;bcgsc.ca	37	X	21458842	21458842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CNKSR2	NM_001168647	exon4	c.A462G	p.S154S	CTATTCAGTTACA	.	55	4	60	0	.	158	G	21458842	A	G	21458842	2	3	60	1	0	0	0	0	0	0	0	1	3607	175	7	2		2	CNKSR2	23	21458842	Silent	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10		21458842	133811718	75	8632											
CXorf22	170063	hgsc.bcm.edu;bcgsc.ca	37	X	35966467	35966467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CXorf22	NM_152632	exon4	c.T554C	p.I185T	TACCCATCCTCAT	.	52	5	78	0	.	272	C	35966467	T	C	35966467	3	2	60	1	0	0	0	0	1	0	0	0	4102	1435	50	2	568	2	CXorf22	23	35966467	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	14507625	35966467	119304093	76	8633											
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76972657	76972657	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATRX	NM_138270	exon2	c.A84G	p.E28E	TTCAGATTCTTCT	.	55	7	84	0	.	833	C	76972657	T	C	76972657	2	2	60	1	0	0	0	0	0	0	0	1	1208	1490	52	2		2	ATRX	23	76972657	Silent	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	41006190	76972657	78297903	77	8634											
PCDH19	57526	hgsc.bcm.edu;bcgsc.ca	37	X	99657571	99657571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PCDH19	NM_001184880	exon3	c.A2567G	p.Q856R	GGCCCCTGGCTGT	.	69	4	139	0	.	269	C	99657571	T	C	99657571	3	2	60	1	0	0	0	0	1	0	0	0	11514	1580	55	2	895	2	PCDH19	23	99657571	Missense_Mutation	SNP	T	TCGA-DD-A1ED-01A-11D-A152-10	22684914	99657571	55612989	78	8635											
CXorf57	55086	hgsc.bcm.edu;bcgsc.ca	37	X	105876229	105876229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CXorf57	NM_018015	exon5	c.A1156G	p.R386G	GTAGGAAGGGTCC	.	186	8	238	0	.	107	G	105876229	A	G	105876229	3	3	60	1	0	0	0	0	1	0	0	0	4113	63	3	2	1174	2	CXorf57	23	105876229	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	6218658	105876229	49394331	79	8636											
F8	2157	ucsc.edu;bcgsc.ca	37	X	154124423	154124423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	F8	NM_000132	exon22	c.T6358C	p.F2120L	TGATAAACTGAGA	.	85	0	63	1	.	182	G	154124423	A	G	154124423	3	3	60	1	0	0	0	0	1	0	0	0	5350	43	2	2	745	2	F8	23	154124423	Missense_Mutation	SNP	A	TCGA-DD-A1ED-01A-11D-A152-10	48248194	154124423	1146137	80	8637											
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1322749	1322749	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CCNL2	NM_030937	exon11	c.G1425A	p.E475E	CGCCCGCTCCCGT	.	96	31	56	0	.	70	T	1322749	C	T	1322749	2	4	61	1	0	0	0	0	0	0	0	1	2932	796	28	3		3	CCNL2	1	1322749	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10		1322749	247927872	1	8638											
MMEL1	79258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2535696	2535696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MMEL1	NM_033467	exon10	c.A841G	p.M281V	ACACCATGAACTG	.	126	82	67	0	.	90	C	2535696	T	C	2535696	3	2	61	1	0	0	0	0	1	0	0	0	9646	1464	51	2	1558	2	MMEL1	1	2535696	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	1212947	2535696	246714925	2	8639											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11204794	11204794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTOR	NM_004958	exon34	c.A4783G	p.M1595V	ACAGCATGTGGCA	.	42	28	28	0	.	1439	C	11204794	T	C	11204794	3	2	61	1	0	0	0	0	1	0	0	0	9954	1464	51	2	2966	2	MTOR	1	11204794	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	8669098	11204794	238045827	3	8640											
PRAMEF4	400735	ucsc.edu;bcgsc.ca	37	1	12943156	12943156	+	Silent	SNP	T	T	C	rs3121080	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRAMEF4	NM_001009611	exon2	c.A60G	p.L20L	GTCCCTTAGCAGG	.	71	15	85	0	T|0.950;C|0.050	45	C	12943156	T	C	12943156	2	2	61	1	0	0	0	0	0	0	0	1	12437	1741	61	2		2	PRAMEF4	1	12943156	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	1738362	12943156	236307465	4	8641											
USP24	23358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	55573092	55573092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USP24	NM_015306	exon40	c.G4582A	p.E1528K	ACTGCTCCATTTC	.	80	8	68	0	.	521	T	55573092	C	T	55573092	3	4	61	1	0	0	0	0	1	0	0	0	17052	864	30	3	3396	3	USP24	1	55573092	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	42629936	55573092	193677529	5	8642											
SLC22A15	55356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116563474	116563474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC22A15	NM_018420	exon4	c.A566G	p.E189G	TTAATGAATGTGT	.	366	150	136	0	.	67	G	116563474	A	G	116563474	3	3	61	1	0	0	0	0	1	0	0	0	14446	246	9	2	580	2	SLC22A15	1	116563474	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	60990382	116563474	132687147	6	8643											
MUC1	4582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155160803	155160803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC1	NM_001204286	exon4	c.G751A	p.V251I	GAGGTACCGTGCT	.	509	90	143	0	.	1147	T	155160803	C	T	155160803	3	4	61	1	0	0	0	0	1	0	0	0	9970	522	18	3		3	MUC1	1	155160803	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	38597329	155160803	94089818	7	8644											
FAM189B	10712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155224577	155224577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM189B	NM_001267608	exon1	c.T92G	p.L31R	GCCTGCAGCCAGG	.	170	19	47	0	.	154	C	155224577	A	C	155224577	3	2	61	1	0	0	0	0	1	0	0	0	5517	188	7	5	1962	5	FAM189B	1	155224577	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	63774	155224577	94026044	8	8645											
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158435704	158435704	+	Missense_Mutation	SNP	T	T	C	rs145698229	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR10K1	NM_001004473	exon1	c.T353C	p.M118T	CAGCCATGGGCTA	.	407	68	146	0	T|0.997;C|0.003	69	C	158435704	T	C	158435704	3	2	61	1	0	0	0	0	1	0	0	0	10913	1464	51	2	355	2	OR10K1	1	158435704	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	3211127	158435704	90814917	9	8646											
OR6K6	128371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158725609	158725609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6K6	NM_001005184	exon1	c.A1004G	p.Q335R	ACTATCAGAAGAG	.	301	46	118	0	.	69	G	158725609	A	G	158725609	3	3	61	1	0	0	0	0	1	0	0	0	11204	188	7	2	1006	2	OR6K6	1	158725609	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	289905	158725609	90525012	10	8647											
DUSP27	92235	broad.mit.edu;mdanderson.org	37	1	167095361	167095361	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DUSP27	NM_001080426	exon5	c.G993A	p.K331K	GGGGAAGGCCACC	.	19	5	10	1	.	71	A	167095361	G	A	167095361	2	1	61	1	0	0	0	0	0	0	0	1	4824	991	35	3		3	DUSP27	1	167095361	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	8369752	167095361	82155260	11	8648											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179621325	179621325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TDRD5	NM_173533	exon13	c.G2153A	p.R718H	AGTTACGTATCTT	.	239	23	106	0	.	94	A	179621325	G	A	179621325	3	1	61	1	0	0	0	0	1	0	0	0	15730	1145	40	1	2199	1	TDRD5	1	179621325	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	12525964	179621325	69629296	12	8649											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	198721876	198721876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPRC	NM_002838	exon31	c.A3484G	p.S1162G	CACAAGAGTACAC	.	89	13	36	0	.	295	G	198721876	A	G	198721876	3	3	61	1	0	0	0	0	1	0	0	0	12797	304	11	2	3607	2	PTPRC	1	198721876	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	19100551	198721876	50528745	13	8650											
OPTC	26254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203468895	203468895	+	Silent	SNP	G	G	T	rs114294638	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OPTC	NM_014359	exon5	c.G648T	p.L216L	AGCTCTGCCCGTG	.	188	114	74	0	G|0.998;A|0.002	492	T	203468895	G	T	203468895	2	4	61	1	0	0	0	0	0	0	0	1	10888	1306	46	3		3	OPTC	1	203468895	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	4747019	203468895	45781726	14	8651											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	235904821	235904821	+	Silent	SNP	C	C	T	rs116017878		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LYST	NM_000081	exon31	c.G8259A	p.S2753S	GGCTGGCGACAAA	.	313	27	102	0	C|0.999;T|0.001	143	T	235904821	C	T	235904821	2	4	61	1	0	0	0	0	0	0	0	1	9128	755	27	1		1	LYST	1	235904821	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	32435926	235904821	13345800	15	8652											
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	242035389	242035389	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EXO1	NM_130398	exon12	c.G1323A	p.K441K	GAAGAAGACCAAG	.	376	32	140	0	.	661	A	242035389	G	A	242035389	2	1	61	1	0	0	0	0	0	0	0	1	5300	933	33	3		3	EXO1	1	242035389	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	6130568	242035389	7215232	16	8653											
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	p.V137L	CTTCTACGTGACA	.	963	114	159	1	.	.	TC	248525291	CG	TC	248525290	3	4	61	1	0	0	0	0	1	0	0	0	11027	547	19	1	410	1	OR2T4	1	248525290	Missense_Mutation	DNP	CG	TCGA-DD-A1EF-01A-11D-A12Z-10	6489901	248525290	725331	17	8654											
UBXN2A	165324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24194229	24194229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBXN2A	NM_181713	exon3	c.A125T	p.E42V	TTTTTGAGGAAGC	.	106	64	69	0	.	90	T	24194229	A	T	24194229	3	4	61	1	0	0	0	0	1	0	0	0	16911	304	11	4	131	4	UBXN2A	2	24194229	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		24194229	219005144	18	8655											
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55473534	55473534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTIF2	NM_002453	exon10	c.G1045A	p.A349T	GATCTGCTTTCAA	.	256	24	125	0	.	91	T	55473534	C	T	55473534	3	4	61	1	0	0	0	0	1	0	0	0	9934	797	28	3	1166	3	MTIF2	2	55473534	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	31279305	55473534	187725839	19	8656											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128474768	128474768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	WDR33	NM_018383	exon17	c.C2830A	p.P944T	GAGGGGGAATGCG	.	152	97	60	0	.	90	T	128474768	G	T	128474768	3	4	61	1	0	0	0	0	1	0	0	0	17284	1174	41	3	1204	3	WDR33	2	128474768	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	73001234	128474768	114724605	20	8657											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179548789	179548789	+	Missense_Mutation	SNP	C	C	T	rs72650032	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon133	c.G32743A	p.A10915T	GGACAGCTCTCTT	.	181	115	91	0	C|0.143;G|0.857	636	T	179548789	C	T	179548789	3	4	61	1	0	0	0	0	1	0	0	0	16732	797	28	3	71706	3	TTN	2	179548789	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	51074021	179548789	63650584	21	8658											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179575865	179575865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon97	c.C28098G	p.S9366R	TGCAAGGCTCCGG	.	77	13	70	0	.	636	C	179575865	G	C	179575865	3	2	61	1	0	0	0	0	1	0	0	0	16732	1194	42	4	76495	4	TTN	2	179575865	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	27076	179575865	63623508	22	8659											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204326584	204326584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RAPH1	NM_203365	exon7	c.C953T	p.A318V	ACTTGTGCCTCTT	.	474	24	114	0	.	1151	A	204326584	G	A	204326584	3	1	61	1	0	0	0	0	1	0	0	0	13050	1319	46	3	3002	3	RAPH1	2	204326584	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	24750719	204326584	38872789	23	8660											
SLC19A3	80704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228567037	228567037	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC19A3	.	.	.	.	CCATGGCTGATCA	.	53	6	33	0	.	92	T	228567037	C	T	228567037	5	4	61	1	0	0	0	0	0	0	1	0	14430	811	28	3		3	SLC19A3	2	228567037	Splice_Site	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	24240453	228567037	14632336	24	8661											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884727	228884727	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPHKAP	NM_030623	exon7	c.T843A	p.I281I	TGTTTTAATCAAT	.	1095	145	187	0	.	167	T	228884727	A	T	228884727	2	4	61	1	0	0	0	0	0	0	0	1	15047	358	13	4		4	SPHKAP	2	228884727	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	317690	228884727	14314646	25	8662											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4732940	4732940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ITPR1	NM_001099952	exon32	c.G3914A	p.R1305Q	ACGGTCGGAATGT	.	225	67	106	0	.	710	A	4732940	G	A	4732940	3	1	61	1	0	0	0	0	1	0	0	0	7920	1116	39	1	4059	1	ITPR1	3	4732940	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10		4732940	193289490	26	8663											
CLASP2	23122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33673843	33673843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CLASP2	NM_015097	exon9	c.G886A	p.A296T	CTCCAGCACCTCC	.	212	74	95	1	.	93	T	33673843	C	T	33673843	3	4	61	1	0	0	0	0	1	0	0	0	3455	710	25	3	3757	3	CLASP2	3	33673843	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	28940903	33673843	164348587	27	8664											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38135225	38135225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DLEC1	NM_007337	exon12	c.C1886T	p.T629M	GGTCCACGGCTAG	.	189	54	68	0	.	161	T	38135225	C	T	38135225	3	4	61	1	0	0	0	0	1	0	0	0	4552	536	19	1	1932	1	DLEC1	3	38135225	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	4461382	38135225	159887205	28	8665											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52440270	52440276	+	Frame_Shift_Del	DEL	TGCTGCA	TGCTGCA	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TGCTGCA	TGCTGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	BAP1,NS,carcinoma,-1	BAP1	NM_004656	exon9	c.776_782del	p.259_261del	CCTACCTGCTGCA	.	53	14	61	0	.	1032	-	52440276	TGCTGCA	-	52440270	7	5	61	1	0	1	0	1	0	0	0	0	1311	1594	55	0	1443	0	BAP1	3	52440270	Frame_Shift_Del	DEL	TGCTGCA	TCGA-DD-A1EF-01A-11D-A12Z-10	14305045	52440270	145582160	29	8666											
SPATA12	353324	broad.mit.edu;bcgsc.ca	37	3	57108184	57108184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPATA12	NM_181727	exon2	c.G462T	p.E154D	TGCCGAGCCCAGT	.	132	9	63	0	.	90	T	57108184	G	T	57108184	3	4	61	1	0	0	0	0	1	0	0	0	14998	962	34	3	464	3	SPATA12	3	57108184	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	4667914	57108184	140914246	30	8667											
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111688738	111688738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PHLDB2	NM_001134439	exon16	c.A3517T	p.T1173S	AAGCGAACATTCT	.	123	39	72	0	.	96	T	111688738	A	T	111688738	3	4	61	1	0	0	0	0	1	0	0	0	11852	43	2	4	3660	4	PHLDB2	3	111688738	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	54580554	111688738	86333692	31	8668											
BOC	91653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	112969411	112969411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BOC	NM_033254	exon4	c.C107T	p.P36L	AGGTCCCTCAGGT	.	94	7	47	0	.	157	T	112969411	C	T	112969411	3	4	61	1	0	0	0	0	1	0	0	0	1481	681	24	3	113	3	BOC	3	112969411	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	1280673	112969411	85053019	32	8669											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121207657	121207657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	POLQ	NM_199420	exon16	c.C4121T	p.P1374L	GGAAAAGGAATGT	.	405	46	144	0	.	664	A	121207657	G	A	121207657	3	1	61	1	0	0	0	0	1	0	0	0	12208	1000	35	3	3711	3	POLQ	3	121207657	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	8238246	121207657	76814773	33	8670											
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129389440	129389440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMCC1	NM_001017395	exon4	c.C1244A	p.P415Q	TATTTTGGGCTAG	.	269	32	119	0	.	91	T	129389440	G	T	129389440	3	4	61	1	0	0	0	0	1	0	0	0	15989	1348	47	3	729	3	TMCC1	3	129389440	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	8181783	129389440	68632990	34	8671											
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140140017	140140017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CLSTN2	NM_022131	exon5	c.G688C	p.E230Q	CAGTATGAGATCC	.	87	8	47	0	.	157	C	140140017	G	C	140140017	3	2	61	1	0	0	0	0	1	0	0	0	3562	1291	45	4	706	4	CLSTN2	3	140140017	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	10750577	140140017	57882413	35	8672											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142215986	142215986	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATR	NM_001184	exon33	c.G5607A	p.Q1869Q	AGAATGCTGGAAA	.	96	42	43	0	.	1139	T	142215986	C	T	142215986	2	4	61	1	0	0	0	0	0	0	0	1	1204	796	28	3		3	ATR	3	142215986	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	2075969	142215986	55806444	36	8673											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150873991	150873991	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MED12L	NM_053002	exon5	c.C600T	p.A200A	GTTGGCCAAGATT	.	87	27	41	0	.	576	T	150873991	C	T	150873991	2	4	61	1	0	0	0	0	0	0	0	1	9429	581	21	3		3	MED12L	3	150873991	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	8658005	150873991	47148439	37	8674											
LRRC31	79782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	169557828	169557828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LRRC31	NM_024727	exon9	c.A1601G	p.D534G	AAGCATTCTAGTT	.	472	30	151	1	.	93	C	169557828	T	C	169557828	3	2	61	1	0	0	0	0	1	0	0	0	8986	1783	62	2	61	2	LRRC31	3	169557828	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	18683837	169557828	28464602	38	8675											
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184910999	184910999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHHADH	NM_001966	exon7	c.T1187G	p.L396R	GCTGAGAGTTCAG	.	169	64	98	0	.	93	C	184910999	A	C	184910999	3	2	61	1	0	0	0	0	1	0	0	0	4982	304	11	5	988	5	EHHADH	3	184910999	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	15353171	184910999	13111431	39	8676											
ZNF721	170960	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	436527	436527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF721	NM_133474	exon3	c.C1729G	p.P577A	GAATTCTCCTATG	.	177	28	70	1	.	47	C	436527	T	C	436527	3	2	61	1	0	0	0	0	1	0	0	0	18119	1559	54	2	1046	2	ZNF721	4	436527	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10		436527	190717749	40	8677											
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4275388	4275388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LYAR	NM_017816	exon8	c.G841A	p.D281N	TAGAATCTGTTTC	.	149	40	76	0	.	90	T	4275388	C	T	4275388	3	4	61	1	0	0	0	0	1	0	0	0	9103	913	32	3	310	3	LYAR	4	4275388	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	3838861	4275388	186878888	41	8678											
STK32B	55351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5170120	5170120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STK32B	NM_018401	exon3	c.T203A	p.V68D	GGAATGTTTTCCG	.	176	34	56	0	.	1002	A	5170120	T	A	5170120	3	1	61	1	0	0	0	0	1	0	0	0	15297	1725	60	4	213	4	STK32B	4	5170120	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	894732	5170120	185984156	42	8679											
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16035130	16035130	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PROM1	NM_006017	exon4	c.T306C	p.I102I	GTAGACAATCTGC	.	172	46	75	0	.	207	G	16035130	A	G	16035130	2	3	61	1	0	0	0	0	0	0	0	1	12555	126	5	2		2	PROM1	4	16035130	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	10865010	16035130	175119146	43	8680											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79428611	79428611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRAS1	NM_025074	exon62	c.C9353T	p.S3118F	TCCTGTCCAATGA	.	179	51	99	0	.	68	T	79428611	C	T	79428611	3	4	61	1	0	0	0	0	1	0	0	0	6042	855	30	3	9674	3	FRAS1	4	79428611	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	63393481	79428611	111725665	44	8681											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89039357	89039357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ABCG2	NM_004827	exon7	c.A745G	p.I249V	TGAAGATGGAATA	.	109	34	80	0	.	90	C	89039357	T	C	89039357	3	2	61	1	0	0	0	0	1	0	0	0	69	1464	51	2	1262	2	ABCG2	4	89039357	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	9610746	89039357	102114919	45	8682											
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144467138	144467138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMARCA5	NM_003601	exon19	c.A2458G	p.I820V	CTTAAAATTGATG	.	243	82	102	0	.	227	G	144467138	A	G	144467138	3	3	61	1	0	0	0	0	1	0	0	0	14771	101	4	2	2532	2	SMARCA5	4	144467138	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	55427781	144467138	46687138	46	8683											
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146686272	146686272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF827	NM_178835	exon13	c.T3098A	p.M1033K	TCAAACATGTTCT	.	104	20	62	0	.	22	T	146686272	A	T	146686272	3	4	61	1	0	0	0	0	1	0	0	0	18177	217	8	4	139	4	ZNF827	4	146686272	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	2219134	146686272	44468004	47	8684											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155278437	155278437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DCHS2	NM_017639	exon6	c.A734G	p.N245S	GAAAAGTTGACAG	.	60	19	46	0	.	94	C	155278437	T	C	155278437	3	2	61	1	0	0	0	0	1	0	0	0	4288	1725	60	2	8192	2	DCHS2	4	155278437	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	8592165	155278437	35875839	48	8685											
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	181677	181677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHG4B	NM_052909	exon17	c.T3383C	p.F1128S	AGCCATTCATGGA	.	99	25	49	0	.	228	C	181677	T	C	181677	3	2	61	1	0	0	0	0	1	0	0	0	12072	1783	62	2	3449	2	PLEKHG4B	5	181677	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10		181677	180733583	49	8686											
DDX4	54514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55083699	55083699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DDX4	NM_024415	exon15	c.C1043T	p.A348V	TTTTGGCTCATAT	.	128	30	81	0	.	227	T	55083699	C	T	55083699	3	4	61	1	0	0	0	0	1	0	0	0	4360	797	28	3	1138	3	DDX4	5	55083699	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	54902022	55083699	125831561	50	8687											
SRFBP1	153443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121358098	121358098	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SRFBP1	NM_152546	exon7	c.C1101G	p.S367S	AAGATCCCTAGGT	.	110	35	93	0	.	90	G	121358098	C	G	121358098	2	3	61	1	0	0	0	0	0	0	0	1	15143	610	22	4		4	SRFBP1	5	121358098	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	66274399	121358098	59557162	51	8688											
PCDHA2	56146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140175842	140175842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA2	NM_031495	exon1	c.C1293T	p.G431G	CGGGGGCTCGCCT	.	110	16	66	1	.	94	T	140175842	C	T	140175842	2	4	61	1	0	0	0	0	0	0	0	1	11524	784	28	3		3	PCDHA2	5	140175842	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	18817744	140175842	40739418	52	8689											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140188279	140188279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA4	NM_031500	exon1	c.G1507A	p.A503T	GAGCGCGCGCTGT	.	112	36	40	0	.	96	A	140188279	G	A	140188279	3	1	61	1	0	0	0	0	1	0	0	0	11526	1087	38	1	1509	1	PCDHA4	5	140188279	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	12437	140188279	40726981	53	8690											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140723657	140723657	+	Silent	SNP	C	C	T	rs200693710	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHGA3	NM_032011	exon1	c.C57T	p.L19L	CGCGCTCCTGGGG	.	61	17	47	0	C|0.999;G|0.000	68	T	140723657	C	T	140723657	2	4	61	1	0	0	0	0	0	0	0	1	11555	842	30	3		3	PCDHGA3	5	140723657	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	535378	140723657	40191603	54	8691											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150922777	150922777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAT2	NM_001447	exon9	c.C7911T	p.N2637N	GACTGGGTTAATT	.	53	18	49	0	.	96	A	150922777	G	A	150922777	2	1	61	1	0	0	0	0	0	0	0	1	5690	1252	44	3		3	FAT2	5	150922777	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	10199120	150922777	29992483	55	8692											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169484584	169484584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DOCK2	NM_004946	exon44	c.T4381C	p.S1461P	GGACAGTCCATGT	.	101	17	70	0	.	97	C	169484584	T	C	169484584	3	2	61	1	0	0	0	0	1	0	0	0	4687	1681	58	2	4555	2	DOCK2	5	169484584	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	18561807	169484584	11430676	56	8693											
HIST1H3I	8354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27839822	27839822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HIST1H3I	NM_003533	exon1	c.T272C	p.M91T	AGCGCCATCACCG	.	180	85	65	0	.	91	G	27839822	A	G	27839822	3	3	61	1	0	0	0	0	1	0	0	0	7163	217	8	2	142	2	HIST1H3I	6	27839822	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		27839822	143275245	57	8694											
OR2B6	26212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27925139	27925139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR2B6	NM_012367	exon1	c.G121A	p.G41S	ATCTTTGGCAATC	.	385	16	147	0	.	69	A	27925139	G	A	27925139	3	1	61	1	0	0	0	0	1	0	0	0	10991	1348	47	3	123	3	OR2B6	6	27925139	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	85317	27925139	143189928	58	8695											
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32123651	32123651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PPT2	NM_138717	exon5	c.C455T	p.T152M	CAGACACGGACTA	.	351	73	95	0	.	44	T	32123651	C	T	32123651	3	4	61	1	0	0	0	0	1	0	0	0	12412	536	19	1	473	1	PPT2	6	32123651	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	4198512	32123651	138991416	59	8696											
GPRC6A	222545	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	117150115	117150115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPRC6A	NM_148963	exon1	c.G62A	p.C21Y	GTCTGGCAAGGCT	.	173	25	77	1	.	96	T	117150115	C	T	117150115	3	4	61	1	0	0	0	0	1	0	0	0	6728	710	25	3	2742	3	GPRC6A	6	117150115	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	85026464	117150115	53964952	60	8697											
HBS1L	10767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	135358101	135358102	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HBS1L	NM_001145207	exon5	c.1494_1495insA	p.N498fs	ATCTGGGTTTTTT	.	142	34	109	0	.	92	T	135358102	-	T	135358101	7	5	61	1	0	1	1	0	0	0	0	0	6987	1252	44	0	2089	0	HBS1L	6	135358101	Frame_Shift_Ins	INS	-	TCGA-DD-A1EF-01A-11D-A12Z-10	18207986	135358101	35756966	61	8698											
MAP7	9053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136742909	136742909	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MAP7	NM_001198611	exon2	c.G162A	p.K54K	ATTTTTCTTATCT	.	319	78	127	2	.	90	T	136742909	C	T	136742909	2	4	61	1	0	0	0	0	0	0	0	1	9266	912	32	3		3	MAP7	6	136742909	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	1384808	136742909	34372158	62	8699											
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu	37	7	4899906	4899913	+	Frame_Shift_Del	DEL	TTCTGTTG	TTCTGTTG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TTCTGTTG	TTCTGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PAPOLB	NM_020144	exon1	c.1529_1536del	p.510_512del	TCTACCTTCTGTT	.	65	11	22	0	.	493	-	4899913	TTCTGTTG	-	4899906	7	5	61	1	0	1	0	1	0	0	0	0	11430	1606	56	0	381	0	PAPOLB	7	4899906	Frame_Shift_Del	DEL	TTCTGTTG	TCGA-DD-A1EF-01A-11D-A12Z-10		4899906	154238757	63	8700	47	2									
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu	37	7	4899915	4899927	+	Frame_Shift_Del	DEL	GTGTGCTTTCTTG	GTGTGCTTTCTTG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	GTGTGCTTTCTTG	GTGTGCTTTCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PAPOLB	NM_020144	exon1	c.1515_1527del	p.505_509del	TGTTGAGTGTGCT	.	62	11	25	0	.	493	-	4899927	GTGTGCTTTCTTG	-	4899915	7	5	61	1	0	1	0	1	0	0	0	0	11430	1020	36	0	390	0	PAPOLB	7	4899915	Frame_Shift_Del	DEL	GTGTGCTTTCTTG	TCGA-DD-A1EF-01A-11D-A12Z-10	9	4899915	154238748	64	8701	47	2									
BZW2	28969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	16720997	16720997	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BZW2	NM_014038	exon4	c.G307T	p.E103X	GCAAATGAAGATC	.	107	19	57	0	.	92	T	16720997	G	T	16720997	4	4	61	1	0	0	0	0	0	1	0	0	1579	1291	45	3	317	3	BZW2	7	16720997	Nonsense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	11821082	16720997	142417666	65	8702											
CBX3	11335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26248077	26248077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CBX3	NM_016587	exon4	c.A232G	p.N78D	TTTCTTAACTCTC	.	248	102	116	0	.	227	G	26248077	A	G	26248077	3	3	61	1	0	0	0	0	1	0	0	0	2719	362	13	2	242	2	CBX3	7	26248077	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	9527080	26248077	132890586	66	8703											
ELN	2006	ucsc.edu;bcgsc.ca	37	7	73459618	73459618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ELN	NM_001081753	exon10	c.C551T	p.A184V	CCAAGGCTCCAGG	.	39	4	29	0	.	95	T	73459618	C	T	73459618	3	4	61	1	0	0	0	0	1	0	0	0	5071	797	28	3	589	3	ELN	7	73459618	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	47211541	73459618	85679045	67	8704											
SLC12A9	56996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100452001	100452001	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC12A9	NM_020246	exon2	c.181+1G>T	.	GGATTGGTGAGTG	.	499	133	158	0	.	90	T	100452001	G	T	100452001	5	4	61	1	0	0	0	0	0	0	1	0	14390	1275	44	3	184	3	SLC12A9	7	100452001	Splice_Site	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	26992383	100452001	58686662	68	8705											
SRRT	51593	ucsc.edu;bcgsc.ca	37	7	100485882	100485882	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SRRT	NM_015908	exon19	c.T2433C	p.G811G	AGCTGGTGCTGTC	.	40	4	26	0	.	92	C	100485882	T	C	100485882	2	2	61	1	0	0	0	0	0	0	0	1	15171	1683	59	2		2	SRRT	7	100485882	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	33881	100485882	58652781	69	8706											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	100678400	100678400	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC17	NM_001040105	exon3	c.G3703T	p.E1235X	AGTTCTGAGGCTA	.	102	21	67	0	.	95	T	100678400	G	T	100678400	4	4	61	1	0	0	0	0	0	1	0	0	9974	1291	45	3	3713	3	MUC17	7	100678400	Nonsense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	192518	100678400	58460263	70	8707											
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107115448	107115448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR22	NM_005295	exon3	c.T943C	p.S315P	AGGATGTCTTTAT	.	330	109	153	0	.	92	C	107115448	T	C	107115448	3	2	61	1	0	0	0	0	1	0	0	0	6682	1667	58	2	945	2	GPR22	7	107115448	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	6437048	107115448	52023215	71	8708											
UBE2H	7328	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129520790	129520790	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBE2H	NM_182697	exon2	c.T75C	p.V25V	GATCGTAACCTCA	.	111	36	61	1	.	226	G	129520790	A	G	129520790	2	3	61	1	0	0	0	0	0	0	0	1	16855	349	13	2		2	UBE2H	7	129520790	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	22405342	129520790	29617873	72	8709											
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	13948074	13948074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SGCZ	NM_139167	exon8	c.T817A	p.S273T	TTGAGGAGCTGGG	.	60	26	52	0	.	93	T	13948074	A	T	13948074	3	4	61	1	0	0	0	0	1	0	0	0	14204	304	11	4	125	4	SGCZ	8	13948074	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		13948074	132415948	73	8710											
PROSC	11212	ucsc.edu;bcgsc.ca	37	8	37633525	37633525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PROSC	NM_007198	exon7	c.C687A	p.F229L	GGATTTCCAGCAT	.	45	6	26	0	.	90	A	37633525	C	A	37633525	3	1	61	1	0	0	0	0	1	0	0	0	12559	854	30	3	713	3	PROSC	8	37633525	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	23685451	37633525	108730497	74	8711											
MMP16	4325	broad.mit.edu;bcgsc.ca	37	8	89179912	89179912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MMP16	NM_005941	exon4	c.A695T	p.N232I	TTAGGATTTCCTA	.	146	6	54	0	.	231	A	89179912	T	A	89179912	3	1	61	1	0	0	0	0	1	0	0	0	9655	1493	52	4	1312	4	MMP16	8	89179912	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	51546387	89179912	57184110	75	8712											
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103293516	103293516	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBR5	NM_015902	exon42	c.5927+1G>A	.	TGGATACCTTTTG	.	727	219	146	0	.	761	T	103293516	C	T	103293516	5	4	61	1	0	0	0	0	0	0	1	0	16902	521	18	3	2547	3	UBR5	8	103293516	Splice_Site	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	14113604	103293516	43070506	76	8713											
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	106331179	106331179	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZFPM2	NM_012082	exon1	c.C10T	p.R4X	TCCCGGCGAAAGC	.	205	30	37	0	.	139	T	106331179	C	T	106331179	4	4	61	1	0	0	0	0	0	1	0	0	17655	760	27	1	12	1	ZFPM2	8	106331179	Nonsense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	3037663	106331179	40032843	77	8714											
ANGPT1	284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108297062	108297062	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANGPT1	NM_001146	exon7	c.C1053A	p.P351P	ACCGGAGGGATTT	.	278	40	76	0	.	521	T	108297062	G	T	108297062	2	4	61	1	0	0	0	0	0	0	0	1	610	987	35	3		3	ANGPT1	8	108297062	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	1965883	108297062	38066960	78	8715											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	131797673	131797673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ADCY8	NM_001115	exon16	c.G3109A	p.G1037S	TGCTGCCAATGGT	.	109	9	51	0	.	157	T	131797673	C	T	131797673	3	4	61	1	0	0	0	0	1	0	0	0	300	594	21	3	658	3	ADCY8	8	131797673	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	23500611	131797673	14566349	79	8716											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133961019	133961019	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TG	NM_003235	exon27	c.5234-2A>G	.	ATTCTCAGGTGCC	.	266	63	90	0	.	145	G	133961019	A	G	133961019	5	3	61	1	0	0	0	0	0	0	1	0	15810	202	7	2	5338	2	TG	8	133961019	Splice_Site	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	2163346	133961019	12403003	80	8717											
DMRT2	10655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	1056606	1056606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DMRT2	NM_181872	exon4	c.G1019T	p.R340I	CCTCAAGATTTTT	.	89	22	66	0	.	514	T	1056606	G	T	1056606	3	4	61	1	0	0	0	0	1	0	0	0	4586	942	33	3	1086	3	DMRT2	9	1056606	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10		1056606	140156825	81	8718											
IFNA4	3441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	21187344	21187344	+	Missense_Mutation	SNP	C	C	G	rs3203576		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IFNA4	NM_021068	exon1	c.G187C	p.E63Q	CCTCCTCGGGGAA	.	326	103	135	0	.	92	G	21187344	C	G	21187344	3	3	61	1	0	0	0	0	1	0	0	0	7539	893	31	4	386	4	IFNA4	9	21187344	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	20130738	21187344	120026087	82	8719											
ZNF189	7743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104171115	104171115	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF189	NM_003452	exon3	c.G1065A	p.R355R	CAGTCGGAGCTCA	.	81	19	52	0	.	229	A	104171115	G	A	104171115	2	1	61	1	0	0	0	0	0	0	0	1	17751	1161	41	3		3	ZNF189	9	104171115	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	82983771	104171115	37042316	83	8720											
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767037	105767037	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYLC2	NM_001340	exon4	c.T241C	p.L81L	CGTTCTTTAATGA	.	128	35	76	0	.	91	C	105767037	T	C	105767037	2	2	61	1	0	0	0	0	0	0	0	1	4142	1838	64	2		2	CYLC2	9	105767037	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	1595922	105767037	35446394	84	8721											
OR13C9	286362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107379994	107379994	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR13C9	NM_001001956	exon1	c.A492G	p.V164V	CAATTGTACTACA	.	206	67	105	0	.	68	C	107379994	T	C	107379994	2	2	61	1	0	0	0	0	0	0	0	1	10939	1625	57	2		2	OR13C9	9	107379994	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	1612957	107379994	33833437	85	8722											
SUSD1	64420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114820918	114820918	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SUSD1	NM_022486	exon14	c.T1899A	p.S633S	ATCACAAGAAAAT	.	97	28	55	0	.	90	T	114820918	A	T	114820918	2	4	61	1	0	0	0	0	0	0	0	1	15404	59	3	4		4	SUSD1	9	114820918	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	7440924	114820918	26392513	86	8723											
ALAD	210	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116151330	116151330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALAD	NM_000031	exon11	c.G858C	p.W286C	TCCATGCCACAGC	.	70	12	49	0	.	90	G	116151330	C	G	116151330	3	3	61	1	0	0	0	0	1	0	0	0	483	740	26	4	142	4	ALAD	9	116151330	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	1330412	116151330	25062101	87	8724											
EHMT1	79813	ucsc.edu;bcgsc.ca	37	9	140707934	140707934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHMT1	NM_024757	exon21	c.C3132T	p.N1044N	TCAGAACTGCGTG	.	45	4	29	0	.	154	T	140707934	C	T	140707934	2	4	61	1	0	0	0	0	0	0	0	1	4983	564	20	3		3	EHMT1	9	140707934	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	24556604	140707934	505497	88	8725											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	436697	436697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DIP2C	NM_014974	exon11	c.A1367T	p.E456V	GGGATCTCTCCCG	.	94	23	54	0	.	156	A	436697	T	A	436697	3	1	61	1	0	0	0	0	1	0	0	0	4529	1551	54	4	3411	4	DIP2C	10	436697	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10		436697	135098050	89	8726											
PFKFB3	5209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6258734	6258734	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PFKFB3	NM_004566	exon5	c.T432C	p.N144N	AGAAAATGACTTT	.	83	30	59	0	.	117	C	6258734	T	C	6258734	2	2	61	1	0	0	0	0	0	0	0	1	11762	1461	51	2		2	PFKFB3	10	6258734	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	5822037	6258734	129276013	90	8727											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17130262	17130262	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CUBN	NM_001081	exon15	c.T1848C	p.C616C	CCAGACACAATCT	.	140	28	52	0	.	166	G	17130262	A	G	17130262	2	3	61	1	0	0	0	0	0	0	0	1	4051	157	6	2		2	CUBN	10	17130262	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	10871528	17130262	118404485	91	8728											
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48388579	48388579	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RBP3	NM_002900	exon1	c.C2299T	p.L767L	ATACCAGCCGCAC	.	90	38	24	0	.	153	A	48388579	G	A	48388579	2	1	61	1	0	0	0	0	0	0	0	1	13157	962	34	3		3	RBP3	10	48388579	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	31258317	48388579	87146168	92	8729											
ZWINT	11130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	58118598	58118598	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZWINT	NM_007057	exon6	c.G591A	p.Q197Q	TGCCTGCTGCTTC	.	272	49	120	0	.	227	T	58118598	C	T	58118598	2	4	61	1	0	0	0	0	0	0	0	1	18246	796	28	3		3	ZWINT	10	58118598	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	9730019	58118598	77416149	93	8730											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64950774	64950774	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	JMJD1C	NM_032776	exon17	c.C6171T	p.S2057S	ATTCTGGGACACA	.	529	161	151	0	.	275	A	64950774	G	A	64950774	2	1	61	1	0	0	0	0	0	0	0	1	7950	1219	43	3		3	JMJD1C	10	64950774	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	6832176	64950774	70583973	94	8731											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	64966479	64966479	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	JMJD1C	NM_032776	exon10	c.C4950G	p.Y1650X	CTTTTTGTAAGTT	.	525	161	174	0	.	275	C	64966479	G	C	64966479	4	2	61	1	0	0	0	0	0	1	0	0	7950	1372	48	4	2740	4	JMJD1C	10	64966479	Nonsense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	15705	64966479	70568268	95	8732											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91474892	91474892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIF20B	NM_016195	exon8	c.A893G	p.K298R	AGAGAAAGATGCT	.	174	64	107	0	.	93	G	91474892	A	G	91474892	3	3	61	1	0	0	0	0	1	0	0	0	8287	72	3	2	919	2	KIF20B	10	91474892	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	26508413	91474892	44059855	96	8733											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94223595	94223595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IDE	NM_004969	exon21	c.A2654T	p.H885L	TGAATGTGTTTTT	.	521	78	163	0	.	92	A	94223595	T	A	94223595	3	1	61	1	0	0	0	0	1	0	0	0	7493	1696	59	4	425	4	IDE	10	94223595	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	2748703	94223595	41311152	97	8734											
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95123767	95123767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYOF	NM_013451	exon27	c.G2819A	p.R940H	GGGTAGCGGCTCT	.	48	19	25	0	.	93	T	95123767	C	T	95123767	3	4	61	1	0	0	0	0	1	0	0	0	10089	768	27	1	3478	1	MYOF	10	95123767	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	900172	95123767	40410980	98	8735											
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9202573	9202573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DENND5A	NM_001243254	exon6	c.C1196A	p.P399Q	AACTGTGGCAAGT	.	161	35	82	0	.	91	T	9202573	G	T	9202573	3	4	61	1	0	0	0	0	1	0	0	0	4436	1348	47	3	2739	3	DENND5A	11	9202573	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10		9202573	125803943	99	8736											
CKAP5	9793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46804849	46804849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CKAP5	NM_001008938	exon18	c.G2224A	p.A742T	TTATGGCATTTGA	.	56	6	43	0	.	92	T	46804849	C	T	46804849	3	4	61	1	0	0	0	0	1	0	0	0	3445	710	25	3	3982	3	CKAP5	11	46804849	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	37602276	46804849	88201667	100	8737											
CPT1A	1374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68530229	68530229	+	Missense_Mutation	SNP	C	C	A	rs201706909	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CPT1A	NM_001876	exon15	c.G1741T	p.D581Y	CCATGTCCTGGGG	.	39	24	20	0	C|0.999;T|0.001	149	A	68530229	C	A	68530229	3	1	61	1	0	0	0	0	1	0	0	0	3831	869	30	3	640	3	CPT1A	11	68530229	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	21725380	68530229	66476287	101	8738											
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111746109	111746109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FDXACB1	NM_138378	exon5	c.T1412C	p.I471T	GATGTGATAACAG	.	85	48	69	0	.	22	G	111746109	A	G	111746109	3	3	61	1	0	0	0	0	1	0	0	0	5806	333	12	2	466	2	FDXACB1	11	111746109	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	43215880	111746109	23260407	102	8739											
SORL1	6653	broad.mit.edu;bcgsc.ca	37	11	121421354	121421354	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SORL1	NM_003105	exon16	c.A2241G	p.G747G	GGAAGGAGAGCTG	.	95	7	57	1	.	228	G	121421354	A	G	121421354	2	3	61	1	0	0	0	0	0	0	0	1	14934	291	11	2		2	SORL1	11	121421354	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	9675245	121421354	13585162	103	8740											
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676275	123676275	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6M1	NM_001005325	exon1	c.G783A	p.Q261Q	GGAGTTCTGATTG	.	161	81	84	0	.	70	T	123676275	C	T	123676275	2	4	61	1	0	0	0	0	0	0	0	1	11205	912	32	3		3	OR6M1	11	123676275	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	2254921	123676275	11330241	104	8741											
PKNOX2	63876	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125237764	125237764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PKNOX2	NM_022062	exon5	c.C110T	p.P37L	AGCCACCCTCCAA	.	93	20	59	0	.	93	T	125237764	C	T	125237764	3	4	61	1	0	0	0	0	1	0	0	0	11983	623	22	3	116	3	PKNOX2	11	125237764	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	1561489	125237764	9768752	105	8742											
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5936960	5936960	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO2	NM_020373	exon7	c.C855T	p.A285A	GGAGCAGGCTGTG	.	80	31	33	0	.	139	A	5936960	G	A	5936960	2	1	61	1	0	0	0	0	0	0	0	1	697	987	35	3		3	ANO2	12	5936960	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10		5936960	127914935	106	8743											
VWF	7450	broad.mit.edu;ucsc.edu	37	12	6128892	6128892	+	Missense_Mutation	SNP	T	T	G	rs61749368		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VWF	NM_000552	exon28	c.A3692C	p.N1231T	GTGAGGTTGACAA	.	29	10	13	0	.	163	G	6128892	T	G	6128892	3	3	61	1	0	0	0	0	1	0	0	0	17243	1725	60	5	4849	5	VWF	12	6128892	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	191932	6128892	127723003	107	8744	48	2									
VWF	7450	broad.mit.edu;ucsc.edu	37	12	6128898	6128898	+	Missense_Mutation	SNP	A	A	C	rs61749367		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VWF	NM_000552	exon28	c.T3686G	p.V1229G	TTGACAACATCAC	.	20	7	13	0	.	163	C	6128898	A	C	6128898	3	2	61	1	0	0	0	0	1	0	0	0	17243	43	2	5	4855	5	VWF	12	6128898	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	6	6128898	127722997	108	8745	48	2									
STRAP	11171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	16035698	16035698	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STRAP	NM_007178	exon1	c.57delT	p.D19fs	GGTTGATTTGGCC	.	69	28	33	0	.	228	-	16035698	T	-	16035698	7	5	61	1	0	1	0	1	0	0	0	0	15325	1490	52	0	59	0	STRAP	12	16035698	Frame_Shift_Del	DEL	T	TCGA-DD-A1EF-01A-11D-A12Z-10	9906800	16035698	117816197	109	8746											
OR6C74	254783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55641327	55641327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6C74	NM_001005490	exon1	c.G256A	p.G86S	GCAACAGGTGATA	.	260	70	108	0	.	68	A	55641327	G	A	55641327	3	1	61	1	0	0	0	0	1	0	0	0	11198	1000	35	3	258	3	OR6C74	12	55641327	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	39605629	55641327	78210568	110	8747											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101365128	101365128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO4	NM_178826	exon5	c.C396T	p.A132A	GCATGCCCCATGG	.	152	30	80	0	.	96	T	101365128	C	T	101365128	2	4	61	1	0	0	0	0	0	0	0	1	699	610	22	3		3	ANO4	12	101365128	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	45723801	101365128	32486767	111	8748											
C12orf42	374470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	103696092	103696092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C12orf42	NM_001099336	exon6	c.C877T	p.R293W	TGTCCCGCGGGGT	.	75	10	45	0	.	91	A	103696092	G	A	103696092	3	1	61	1	0	0	0	0	1	0	0	0	1688	1086	38	1	209	1	C12orf42	12	103696092	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	2330964	103696092	30155803	112	8749											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	117710212	117710212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NOS1	NM_000620	exon10	c.A1817G	p.N606S	CGGGAGTTGTCAC	.	96	8	51	0	.	154	C	117710212	T	C	117710212	3	2	61	1	0	0	0	0	1	0	0	0	10541	1725	60	2	2567	2	NOS1	12	117710212	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	14014120	117710212	16141683	113	8750											
LRRC43	254050	ucsc.edu;bcgsc.ca	37	12	122676081	122676081	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LRRC43	NM_001098519	exon6	c.C1056A	p.G352G	AGAAGGCGAAATG	.	46	4	32	0	.	135	A	122676081	C	A	122676081	2	1	61	1	0	0	0	0	0	0	0	1	9001	755	27	1		1	LRRC43	12	122676081	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	4965869	122676081	11175814	114	8751											
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25823570	25823570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTMR6	NM_004685	exon14	c.T1666G	p.S556A	GAACTGAATGTAA	.	237	58	141	0	.	94	C	25823570	A	C	25823570	3	2	61	1	0	0	0	0	1	0	0	0	9947	246	9	5	203	5	MTMR6	13	25823570	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		25823570	89346308	115	8752											
SLC15A1	6564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99371494	99371494	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC15A1	NM_005073	exon8	c.C637T	p.L213L	TACTCAGGGCTAC	.	53	18	25	0	.	91	A	99371494	G	A	99371494	2	1	61	1	0	0	0	0	0	0	0	1	14398	991	35	3		3	SLC15A1	13	99371494	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	73547924	99371494	15798384	116	8753											
COL4A2	1284	ucsc.edu;bcgsc.ca	37	13	111077155	111077155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	COL4A2	NM_001846	exon5	c.A255G	p.G85G	GCAGGGACGTAAA	.	27	4	30	0	.	95	G	111077155	A	G	111077155	2	3	61	1	0	0	0	0	0	0	0	1	3690	262	10	2		2	COL4A2	13	111077155	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	11705661	111077155	4092723	117	8754											
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72054832	72054832	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SIPA1L1	NM_015556	exon2	c.A243T	p.A81A	GATTGCAGATTGG	.	103	46	63	0	.	156	T	72054832	A	T	72054832	2	4	61	1	0	0	0	0	0	0	0	1	14329	175	7	4		4	SIPA1L1	14	72054832	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		72054832	35294708	118	8755											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	96809512	96809512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATG2B	NM_018036	exon5	c.T688A	p.W230R	CATCCCAGAAGAG	.	192	14	106	0	.	93	T	96809512	A	T	96809512	3	4	61	1	0	0	0	0	1	0	0	0	1094	188	7	4	5700	4	ATG2B	14	96809512	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	24754680	96809512	10540028	119	8756											
OCA2	4948	ucsc.edu;bcgsc.ca	37	15	28235793	28235793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OCA2	NM_000275	exon10	c.A1045G	p.I349V	GCACGATCTGGAA	.	19	4	36	0	.	135	C	28235793	T	C	28235793	3	2	61	1	0	0	0	0	1	0	0	0	10815	1449	50	2	1531	2	OCA2	15	28235793	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10		28235793	74295599	120	8757											
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56387953	56387953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RFX7	NM_022841	exon9	c.A1973G	p.K658R	AGTCGTTTTCTTG	.	151	55	87	0	.	90	C	56387953	T	C	56387953	3	2	61	1	0	0	0	0	1	0	0	0	13268	1841	64	2	2413	2	RFX7	15	56387953	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	28152160	56387953	46143439	121	8758											
ANP32A	8125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69076893	69076893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_006305	exon4	c.C369T	p.C123C	TACCTCGCAATTG	.	255	60	120	0	.	.	A	69076893	G	A	69076893	2	1	61	1	0	0	0	0	0	0	0	1	705	1079	38	1		1	ANP32A	15	69076893	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	12688940	69076893	33454499	122	8759											
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75762179	75762180	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPN9	NM_002833	exon12	c.1520_1521del	p.507_507del	TGGCTCAGGGCAC	.	125	37	62	0	.	226	-	75762180	AG	-	75762179	7	5	61	1	0	1	0	1	0	0	0	0	12794	175	7	0	268	0	PTPN9	15	75762179	Frame_Shift_Del	DEL	AG	TCGA-DD-A1EF-01A-11D-A12Z-10	6685286	75762179	26769213	123	8760											
RCN2	5955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77227917	77227917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RCN2	NM_002902	exon3	c.G301A	p.E101K	ATGCAAGAAGCAA	.	74	20	53	0	.	90	A	77227917	G	A	77227917	3	1	61	1	0	0	0	0	1	0	0	0	13180	943	33	3	311	3	RCN2	15	77227917	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	1465738	77227917	25303475	124	8761											
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99023985	99023985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_182562	exon4	c.G28C	p.V10L	GCACAACCCTTTC	.	105	29	63	0	.	.	G	99023985	C	G	99023985	3	3	61	1	0	0	0	0	1	0	0	0	5488	507	18	4	566	4	FAM169B	15	99023985	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	21796068	99023985	3507407	125	8762											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27761333	27761333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIAA0556	NM_015202	exon16	c.A3052G	p.I1018V	CCCGATATCAATA	.	83	14	54	0	.	141	G	27761333	A	G	27761333	3	3	61	1	0	0	0	0	1	0	0	0	8183	449	16	2	3114	2	KIAA0556	16	27761333	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		27761333	62593420	126	8763											
FUS	2521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31201608	31201608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FUS	NM_004960	exon12	c.G1181T	p.R394L	TGGGCCGTGGAGG	.	168	29	84	0	.	1719	T	31201608	G	T	31201608	3	4	61	1	0	0	0	0	1	0	0	0	6100	1145	40	1	1227	1	FUS	16	31201608	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	3440275	31201608	59153145	127	8764											
FTO	79068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53878098	53878098	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FTO	NM_001080432	exon4	c.T783A	p.H261Q	CTCTCATCTCGAA	.	203	34	107	0	.	68	A	53878098	T	A	53878098	3	1	61	1	0	0	0	0	1	0	0	0	6086	1432	50	4	797	4	FTO	16	53878098	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	22676490	53878098	36476655	128	8765											
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67006590	67006590	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CES3	NM_024922	exon12	c.G1461A	p.E487E	CACAGAGGAGGAG	.	66	17	43	0	.	517	A	67006590	G	A	67006590	2	1	61	1	0	0	0	0	0	0	0	1	3271	991	35	3		3	CES3	16	67006590	Silent	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	13128492	67006590	23348163	129	8766											
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7339378	7339378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMEM102	NM_178518	exon2	c.C188T	p.A63V	TCCGGGCCAAGGA	.	132	46	46	0	.	90	T	7339378	C	T	7339378	3	4	61	1	0	0	0	0	1	0	0	0	16014	739	26	3	190	3	TMEM102	17	7339378	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10		7339378	73855832	130	8767											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10404577	10404577	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYH1	NM_005963	exon27	c.G3588A	p.L1196L	CTTCCTCAGGGTG	.	183	51	103	0	.	171	T	10404577	C	T	10404577	2	4	61	1	0	0	0	0	0	0	0	1	10029	813	29	3		3	MYH1	17	10404577	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	3065199	10404577	70790633	131	8768											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11786904	11786904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH9	NM_001372	exon56	c.C10808A	p.S3603Y	TGCAGTCCGATCT	.	73	15	52	0	.	168	A	11786904	C	A	11786904	3	1	61	1	0	0	0	0	1	0	0	0	4608	869	30	3	11030	3	DNAH9	17	11786904	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	1382327	11786904	69408306	132	8769											
PTRF	284119	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	40574856	40574856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTRF	NM_012232	exon1	c.A260T	p.Q87L	ATGCTCTGCACTG	.	98	24	44	0	.	153	A	40574856	T	A	40574856	3	1	61	1	0	0	0	0	1	0	0	0	12815	1580	55	4	920	4	PTRF	17	40574856	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	28787952	40574856	40620354	133	8770											
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42475346	42475346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPATCH8	NM_001002909	exon8	c.G4099A	p.A1367T	CAGAGGCTGTAGC	.	206	12	80	0	.	94	T	42475346	C	T	42475346	3	4	61	1	0	0	0	0	1	0	0	0	6594	797	28	3	413	3	GPATCH8	17	42475346	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	1900490	42475346	38719864	134	8771											
PLEKHM1	9842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	43552916	43552916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHM1	NM_014798	exon4	c.C473A	p.A158D	TCCTCAGCATCCC	.	114	8	71	0	.	90	T	43552916	G	T	43552916	3	4	61	1	0	0	0	0	1	0	0	0	12080	971	34	3	2733	3	PLEKHM1	17	43552916	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	1077570	43552916	37642294	135	8772											
EVPL	2125	ucsc.edu;bcgsc.ca	37	17	74006092	74006092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EVPL	NM_001988	exon22	c.A3194G	p.K1065R	TCCCTCTTCTCAA	.	43	4	46	0	.	93	C	74006092	T	C	74006092	3	2	61	1	0	0	0	0	1	0	0	0	5292	1609	56	2	2911	2	EVPL	17	74006092	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	30453176	74006092	7189118	136	8773											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	2795979	2795979	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMCHD1	NM_015295	exon46	c.A5752T	p.K1918X	GTGTGCAAACTAG	.	281	80	130	0	.	46	T	2795979	A	T	2795979	4	4	61	1	0	0	0	0	0	1	0	0	14788	131	5	4	5934	4	SMCHD1	18	2795979	Nonsense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		2795979	75281269	137	8774											
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2925247	2925247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LPIN2	NM_014646	exon14	c.C1913G	p.S638C	CGGAGAGACTTCT	.	186	53	88	0	.	227	C	2925247	G	C	2925247	3	2	61	1	0	0	0	0	1	0	0	0	8919	942	33	4	805	4	LPIN2	18	2925247	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	129268	2925247	75152001	138	8775											
ZNF519	162655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14105690	14105690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF519	NM_145287	exon3	c.G849A	p.Q283Q	AATTTTCTGATGT	.	42	7	52	0	.	90	T	14105690	C	T	14105690	2	4	61	1	0	0	0	0	0	0	0	1	17961	912	32	3		3	ZNF519	18	14105690	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	11180443	14105690	63971558	139	8776											
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28956907	28956907	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	DSG4,NS,carcinoma,+1	DSG4	NM_001134453	exon1	c.T33C	p.L11L	TTGCCTTTTGATC	.	142	53	85	0	.	177	C	28956907	T	C	28956907	2	2	61	1	0	0	0	0	0	0	0	1	4779	1828	64	2		2	DSG4	18	28956907	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	14851217	28956907	49120341	140	8777											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31314285	31314285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL3	NM_030632	exon10	c.C988T	p.P330S	TTTACCCCAGAAA	.	211	56	126	0	.	49	T	31314285	C	T	31314285	3	4	61	1	0	0	0	0	1	0	0	0	1068	623	22	3	1026	3	ASXL3	18	31314285	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	2357378	31314285	46762963	141	8778											
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65180960	65180960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DSEL	NM_032160	exon2	c.C916T	p.R306C	AATGGCGCTGGGC	.	103	36	71	0	.	157	A	65180960	G	A	65180960	3	1	61	1	0	0	0	0	1	0	0	0	4775	1087	38	1	2756	1	DSEL	18	65180960	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	33866675	65180960	12896288	142	8779											
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4408946	4408946	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CHAF1A	NM_005483	exon3	c.C150T	p.A50A	GAAAGCCGATGAC	.	129	16	58	0	.	92	T	4408946	C	T	4408946	2	4	61	1	0	0	0	0	0	0	0	1	3311	639	23	1		1	CHAF1A	19	4408946	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10		4408946	54720037	143	8780											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11141502	11141502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	SMARCA4,NS,carcinoma,+1	SMARCA4	NM_003072	exon25	c.G3479A	p.G1160E	CTGGGGGGCTCGG	.	54	31	28	0	.	1523	A	11141502	G	A	11141502	3	1	61	1	0	0	0	0	1	0	0	0	14770	1232	43	3	3573	3	SMARCA4	19	11141502	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	6732556	11141502	47987481	144	8781											
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15063807	15063807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC1A6	NM_005071	exon8	c.A1432G	p.I478V	GCACAATGACCAT	.	217	42	55	0	.	186	C	15063807	T	C	15063807	3	2	61	1	0	0	0	0	1	0	0	0	14436	1464	51	2	270	2	SLC1A6	19	15063807	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	3922305	15063807	44065176	145	8782											
BRD4	23476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15376412	15376412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BRD4	NM_058243	exon5	c.A602C	p.Q201P	GATGCTTGAGTTG	.	330	44	119	1	.	767	G	15376412	T	G	15376412	3	3	61	1	0	0	0	0	1	0	0	0	1504	1812	63	5	3565	5	BRD4	19	15376412	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	312605	15376412	43752571	146	8783											
ZNF100	163227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21910792	21910792	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF100	NM_173531	exon6	c.323-1G>C	.	ATATAACTGAAAG	.	77	8	55	0	.	90	G	21910792	C	G	21910792	5	3	61	1	0	0	0	0	0	0	1	0	17710	579	20	4	1310	4	ZNF100	19	21910792	Splice_Site	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	6534380	21910792	37218191	147	8784											
ZNF681	148213	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23926971	23926971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_138286	exon4	c.C1381G	p.Q461E	AGAACTGGTTAAA	.	69	10	35	0	.	.	C	23926971	G	C	23926971	3	2	61	1	0	0	0	0	1	0	0	0	18085	1357	47	4	560	4	ZNF681	19	23926971	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	2016179	23926971	35202012	148	8785											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927977	23927977	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_138286	exon4	c.A375T	p.G125G	ATAACCTCCTTTT	.	118	48	74	0	.	.	A	23927977	T	A	23927977	2	1	61	1	0	0	0	0	0	0	0	1	18085	1538	54	4		4	ZNF681	19	23927977	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	1006	23927977	35201006	149	8786											
HAUS5	23354	ucsc.edu;bcgsc.ca	37	19	36106246	36106246	+	Missense_Mutation	SNP	A	A	G	rs199705430	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HAUS5	NM_015302	exon6	c.A443G	p.Q148R	CCATGCAGCGGCT	.	43	4	30	0	A|0.999;C|0.001	68	G	36106246	A	G	36106246	3	3	61	1	0	0	0	0	1	0	0	0	6969	188	7	2	465	2	HAUS5	19	36106246	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	12178269	36106246	23022737	150	8787											
PSG1	5669	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	43382236	43382236	+	Missense_Mutation	SNP	C	C	G	rs1058661		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PSG1	NM_001184826	exon2	c.G259C	p.E87Q	TTATTTCACCGTC	.	189	36	99	0	C|1.000;G|0.000	70	G	43382236	C	G	43382236	3	3	61	1	0	0	0	0	1	0	0	0	12653	835	29	4	1073	4	PSG1	19	43382236	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	7275990	43382236	15746747	151	8788											
ZNF284	342909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44590091	44590091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001037813	exon5	c.A460C	p.K154Q	TGTAAAAAATTCT	.	95	9	63	0	.	.	C	44590091	A	C	44590091	3	2	61	1	0	0	0	0	1	0	0	0	17818	15	1	5	474	5	ZNF284	19	44590091	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	1207855	44590091	14538892	152	8789											
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44890916	44890916	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF285	NM_152354	exon4	c.A1491G	p.S497S	AAAATATGAACTG	.	215	116	105	0	.	94	C	44890916	T	C	44890916	2	2	61	1	0	0	0	0	0	0	0	1	17819	1451	51	2		2	ZNF285	19	44890916	Silent	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10	300825	44890916	14238067	153	8790											
PGLYRP1	8993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46525997	46525997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PGLYRP1	NM_005091	exon1	c.T283A	p.Y95N	ACTTGTAGCCCAC	.	278	20	85	0	.	92	T	46525997	A	T	46525997	3	4	61	1	0	0	0	0	1	0	0	0	11793	420	15	4	319	4	PGLYRP1	19	46525997	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	1635081	46525997	12602986	154	8791											
SIGLEC9	27180	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51633303	51633303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SIGLEC9	NM_014441	exon7	c.C1359A	p.D453E	CACTGACACCGAG	.	110	59	42	1	.	91	A	51633303	C	A	51633303	3	1	61	1	0	0	0	0	1	0	0	0	14315	477	17	3	1385	3	SIGLEC9	19	51633303	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	5107306	51633303	7495680	155	8792											
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55106781	55106781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRA1	NM_006863	exon5	c.G575A	p.R192K	GTCGCAGGTGGTC	.	376	65	120	0	.	93	A	55106781	G	A	55106781	3	1	61	1	0	0	0	0	1	0	0	0	8784	1000	35	3	589	3	LILRA1	19	55106781	Missense_Mutation	SNP	G	TCGA-DD-A1EF-01A-11D-A12Z-10	3473478	55106781	4022202	156	8793											
PLCB1	23236	broad.mit.edu;bcgsc.ca	37	20	8713939	8713939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLCB1	NM_015192	exon19	c.T1943G	p.L648R	GTGGCTACAGATT	.	193	11	82	1	.	297	G	8713939	A	G	8713939	3	3	61	1	0	0	0	0	1	0	0	0	12027	391	14	2	2017	2	PLCB1	20	8713939	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		8713939	54311581	157	8794											
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31016044	31016044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL1	NM_015338	exon4	c.A366G	p.E122E	TGGTGAAAACGAT	.	142	17	73	0	.	2057	G	31016044	A	G	31016044	2	3	61	1	0	0	0	0	0	0	0	1	1066	11	1	2		2	ASXL1	20	31016044	Silent	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	22302105	31016044	32009476	158	8795											
PABPC1L	80336	broad.mit.edu;bcgsc.ca	37	20	43545448	43545448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PABPC1L	NM_001124756	exon3	c.A439G	p.T147A	TTTGAGACCCATG	.	193	8	63	0	.	47	G	43545448	A	G	43545448	3	3	61	1	0	0	0	0	1	0	0	0	11364	275	10	2	449	2	PABPC1L	20	43545448	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10	12529404	43545448	19480072	159	8796											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50287725	50287725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATP9A	NM_006045	exon12	c.G1109A	p.G370E	ACGGTCCCGGGGA	.	107	30	47	0	.	94	T	50287725	C	T	50287725	3	4	61	1	0	0	0	0	1	0	0	0	1198	623	22	3	2102	3	ATP9A	20	50287725	Missense_Mutation	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	6742277	50287725	12737795	160	8797											
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10921977	10921977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TPTE	NM_199261	exon18	c.T1046C	p.V349A	GCACAAACCATAG	.	321	13	149	0	.	344	G	10921977	A	G	10921977	3	3	61	1	0	0	0	0	1	0	0	0	16427	43	2	2	637	2	TPTE	21	10921977	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		10921977	37207918	161	8798											
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	47531490	47531492	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	COL6A2	NM_058175	exon2	c.100_102del	p.34_34del	GAGAGAAACAACA	.	112	22	52	0	.	515	-	47531492	AAC	-	47531490	7	5	61	1	0	1	0	1	0	0	0	0	3700	14	1	0	102	0	COL6A2	21	47531490	In_Frame_Del	DEL	AAC	TCGA-DD-A1EF-01A-11D-A12Z-10	36609513	47531490	598405	162	8799											
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26688528	26688528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SEZ6L	NM_021115	exon2	c.T251C	p.V84A	AGCTGGTGCTGGA	.	40	10	23	0	.	95	C	26688528	T	C	26688528	3	2	61	1	0	0	0	0	1	0	0	0	14143	1696	59	2	257	2	SEZ6L	22	26688528	Missense_Mutation	SNP	T	TCGA-DD-A1EF-01A-11D-A12Z-10		26688528	24616038	163	8800											
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135453612	135453612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR112	NM_153834	exon14	c.A7522G	p.M2508V	ATAAGTATGAACC	.	191	86	138	0	.	183	G	135453612	A	G	135453612	3	3	61	1	0	0	0	0	1	0	0	0	6629	449	16	2	7564	2	GPR112	23	135453612	Missense_Mutation	SNP	A	TCGA-DD-A1EF-01A-11D-A12Z-10		135453612	19816948	164	8801											
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153222832	153222832	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HCFC1	NM_005334	exon13	c.G2286A	p.K762K	GCCGGGCTTGGTG	.	211	89	111	0	.	132	T	153222832	C	T	153222832	2	4	61	1	0	0	0	0	0	0	0	1	6991	796	28	3		3	HCFC1	23	153222832	Silent	SNP	C	TCGA-DD-A1EF-01A-11D-A12Z-10	17769220	153222832	2047728	165	8802											
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27876868	27876868	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AHDC1	NM_001029882	exon6	c.C1759A	p.R587R	GCCGTCGTTTTTT	.	257	24	236	0	.	90	T	27876868	G	T	27876868	2	4	62	1	0	0	0	0	0	0	0	1	412	1153	40	1		1	AHDC1	1	27876868	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		27876868	221373753	1	8803											
KANK4	163782	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62739460	62739460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KANK4	NM_181712	exon3	c.G1316C	p.S439T	TCCATGCTGCCTA	.	199	47	121	0	.	74	G	62739460	C	G	62739460	3	3	62	1	0	0	0	0	1	0	0	0	7979	797	28	4	1703	4	KANK4	1	62739460	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	34862592	62739460	186511161	2	8804											
BCL10	8915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85733444	85733444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BCL10	NM_003921	exon3	c.A568G	p.T190A	GTGTAGTTGAAGA	.	78	15	74	0	.	659	C	85733444	T	C	85733444	3	2	62	1	0	0	0	0	1	0	0	0	1362	1725	60	2	137	2	BCL10	1	85733444	Missense_Mutation	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10	22993984	85733444	163517177	3	8805											
PKN2	5586	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89236054	89236054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PKN2	NM_006256	exon4	c.C524A	p.T175K	ATGGTACAGCTCA	.	141	34	132	0	.	522	A	89236054	C	A	89236054	3	1	62	1	0	0	0	0	1	0	0	0	11980	478	17	3	538	3	PKN2	1	89236054	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	3502610	89236054	160014567	4	8806											
OVGP1	5016	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111957947	111957947	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OVGP1	NM_002557	exon11	c.A1176G	p.L392L	TTGTGGTAAAGAA	.	95	29	84	0	.	135	C	111957947	T	C	111957947	2	2	62	1	0	0	0	0	0	0	0	1	11325	1635	57	2		2	OVGP1	1	111957947	Silent	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10	22721893	111957947	137292674	5	8807											
ADCY10	55811	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	167874253	167874253	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADCY10	NM_018417	exon2	c.C126G	p.V42V	CATCAGGACTCCG	.	375	84	167	0	.	493	C	167874253	G	C	167874253	2	2	62	1	0	0	0	0	0	0	0	1	293	1161	41	4		4	ADCY10	1	167874253	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	55916306	167874253	81376368	6	8808											
WNT3A	89780	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	228238561	228238561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WNT3A	NM_033131	exon3	c.G518A	p.R173Q	ACGCCCGGGAGAA	.	237	46	123	0	.	91	A	228238561	G	A	228238561	3	1	62	1	0	0	0	0	1	0	0	0	17386	1116	39	1	528	1	WNT3A	1	228238561	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	60364308	228238561	21012060	7	8809											
BIRC6	57448	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32733177	32733177	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BIRC6	NM_016252	exon51	c.T9831C	p.A3277A	TTCTGCTGTCTGC	.	217	92	167	0	.	233	C	32733177	T	C	32733177	2	2	62	1	0	0	0	0	0	0	0	1	1438	1567	55	2		2	BIRC6	2	32733177	Silent	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10		32733177	210466196	8	8810											
MSH2	4436	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	47639551	47639551	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MSH2	NM_000251	exon4	c.646-2A>T	.	CAAAATAGATAAT	.	293	82	211	0	.	2445	T	47639551	A	T	47639551	5	4	62	1	0	0	0	0	0	0	1	0	9870	434	15	4	658	4	MSH2	2	47639551	Splice_Site	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	14906374	47639551	195559822	9	8811											
CD207	50489	hgsc.bcm.edu;bcgsc.ca	37	2	71062836	71062837	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	.	.	.	p.R24E	CTTGCTCGGGGCC	.	253	21	219	0	.	.	TC	71062837	CG	TC	71062836	3	4	62	1	0	0	0	0	1	0	0	0	2983	884	31	1	939	1	CD207	2	71062836	Missense_Mutation	DNP	CG	TCGA-DD-A1EG-01A-11D-A20W-10	23423285	71062836	172136537	10	8812											
RANBP2	5903	hgsc.bcm.edu;bcgsc.ca	37	2	109379816	109379816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RANBP2	NM_006267	exon20	c.C2821A	p.P941T	TATGGTCCTCCTG	.	247	11	174	0	.	675	A	109379816	C	A	109379816	3	1	62	1	0	0	0	0	1	0	0	0	13028	855	30	3	2899	3	RANBP2	2	109379816	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	38316980	109379816	133819557	11	8813			1	5		2	2	25	C		5.736874e-05
RANBP2	5903	hgsc.bcm.edu;bcgsc.ca	37	2	109379840	109379840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RANBP2	NM_006267	exon20	c.C2845G	p.P949A	GAGTCTCCTGCAA	.	224	10	140	0	.	675	G	109379840	C	G	109379840	3	3	62	1	0	0	0	0	1	0	0	0	13028	855	30	4	2923	4	RANBP2	2	109379840	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	24	109379840	133819533	12	8814			1	5		2	2	25	C		5.736874e-05
TTLL4	9654	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219604821	219604821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTLL4	NM_014640	exon4	c.G1528T	p.D510Y	ACTGAAGATACAG	.	231	25	185	0	.	93	T	219604821	G	T	219604821	3	4	62	1	0	0	0	0	1	0	0	0	16726	942	33	3	1534	3	TTLL4	2	219604821	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	110224981	219604821	23594552	13	8815											
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238285641	238285641	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL6A3	NM_004369	exon7	c.C2844T	p.V948V	TCCTGCGACCAGC	.	226	68	141	2	.	526	A	238285641	G	A	238285641	2	1	62	1	0	0	0	0	0	0	0	1	3701	1045	37	1		1	COL6A3	2	238285641	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	18680820	238285641	4913732	14	8816											
C3orf20	84077	ucsc.edu;bcgsc.ca	37	3	14799024	14799024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3orf20	NM_032137	exon13	c.A2087G	p.E696G	ACGTGGAGCTGGA	.	341	79	263	1	.	94	G	14799024	A	G	14799024	3	3	62	1	0	0	0	0	1	0	0	0	2213	304	11	2	2129	2	C3orf20	3	14799024	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		14799024	183223406	15	8817											
RBM5	10181	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50152926	50152926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RBM5	NM_005778	exon21	c.G1905T	p.E635D	ACTTGAGAGTGAG	.	124	37	117	1	.	278	T	50152926	G	T	50152926	3	4	62	1	0	0	0	0	1	0	0	0	13143	933	33	3	1983	3	RBM5	3	50152926	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	35353902	50152926	147869504	16	8818											
TOMM70A	9868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100093979	100093979	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TOMM70A	NM_014820	exon7	c.C1110T	p.L370L	TTTGATGAGAGCA	.	54	18	58	0	.	91	A	100093979	G	A	100093979	2	1	62	1	0	0	0	0	0	0	0	1	16359	1277	45	3		3	TOMM70A	3	100093979	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	49941053	100093979	97928451	17	8819											
C3orf22	152065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126270923	126270923	+	Silent	SNP	G	G	A	rs34760151	byfrequency;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3orf22	NM_152533	exon3	c.C132T	p.P44P	CTCCCAGGGCTGC	.	113	30	93	0	G|0.687;C|0.313	90	A	126270923	G	A	126270923	2	1	62	1	0	0	0	0	0	0	0	1	2215	987	35	3		3	C3orf22	3	126270923	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	26176944	126270923	71751507	18	8820											
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	155838473	155838473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCNAB1	NM_172160	exon1	c.73delG	p.G25fs	CAGTCTGGGTTTT	.	129	26	110	0	.	94	-	155838473	G	-	155838473	7	5	62	1	0	1	0	1	0	0	0	0	8009	1348	47	0	75	0	KCNAB1	3	155838473	Frame_Shift_Del	DEL	G	TCGA-DD-A1EG-01A-11D-A20W-10	29567550	155838473	42183957	19	8821											
WDR49	151790	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167254660	167254660	+	Missense_Mutation	SNP	G	G	A	rs200695837		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR49	NM_178824	exon7	c.C896T	p.T299M	TTACCCGTAACAA	.	75	19	81	0	G|0.999;A|0.001	155	A	167254660	G	A	167254660	3	1	62	1	0	0	0	0	1	0	0	0	17299	1145	40	1	1233	1	WDR49	3	167254660	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	11416187	167254660	30767770	20	8822											
LIPH	200879	ucsc.edu;bcgsc.ca	37	3	185252690	185252690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LIPH	NM_139248	exon2	c.G280A	p.G94S	GCAAACCCTTTAC	.	208	61	164	1	.	92	T	185252690	C	T	185252690	3	4	62	1	0	0	0	0	1	0	0	0	8824	623	22	3	1111	3	LIPH	3	185252690	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	17998030	185252690	12769740	21	8823											
HTT	3064	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3241656	3241656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HTT	NM_002111	exon67	c.G9299A	p.R3100K	TCTACAGACACCA	.	176	26	139	0	.	281	A	3241656	G	A	3241656	3	1	62	1	0	0	0	0	1	0	0	0	7457	942	33	3	9565	3	HTT	4	3241656	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		3241656	187912620	22	8824											
ALPK1	80216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	113356354	113356354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ALPK1	NM_001102406	exon12	c.G3085A	p.E1029K	GCCCAGGAAACTA	.	124	20	130	0	.	337	A	113356354	G	A	113356354	3	1	62	1	0	0	0	0	1	0	0	0	544	1175	41	3	3123	3	ALPK1	4	113356354	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	110114698	113356354	77797922	23	8825											
ELOVL7	79993	hgsc.bcm.edu;mdanderson.org	37	5	60050627	60050627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ELOVL7	NM_001104558	exon8	c.C670T	p.Q224X	AGAACTGGCTTAT	.	112	33	82	0	.	90	A	60050627	G	A	60050627	4	1	62	1	0	0	0	0	0	1	0	0	5079	1357	47	3	179	3	ELOVL7	5	60050627	Nonsense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		60050627	120864633	24	8826											
MAP1B	4131	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71492183	71492183	+	Missense_Mutation	SNP	G	G	A	rs144088322		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP1B	NM_005909	exon5	c.G3001A	p.E1001K	CGAGCCGAAGAAG	.	127	43	128	0	G|1.000;A|0.000	155	A	71492183	G	A	71492183	3	1	62	1	0	0	0	0	1	0	0	0	9228	1059	37	1	3019	1	MAP1B	5	71492183	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	11441556	71492183	109423077	25	8827											
VCAN	1462	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82833962	82833962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VCAN	NM_004385	exon8	c.T5140C	p.W1714R	TCTGAGTGGATTT	.	89	30	77	0	.	238	C	82833962	T	C	82833962	3	2	62	1	0	0	0	0	1	0	0	0	17135	1696	59	2	5166	2	VCAN	5	82833962	Missense_Mutation	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10	11341779	82833962	98081298	26	8828											
VCAN	1462	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	82836233	82836233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VCAN	NM_004385	exon8	c.G7411T	p.V2471L	CCTGAGGTGCCAA	.	190	55	116	0	.	238	T	82836233	G	T	82836233	3	4	62	1	0	0	0	0	1	0	0	0	17135	1261	44	3	7437	3	VCAN	5	82836233	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	2271	82836233	98079027	27	8829											
NR3C1	2908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	142680214	142680214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NR3C1	NM_001024094	exon5	c.T1586G	p.L529R	GGGGTGAGTTGTG	.	252	76	234	0	.	92	C	142680214	A	C	142680214	3	2	62	1	0	0	0	0	1	0	0	0	10630	304	11	5	822	5	NR3C1	5	142680214	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	59843981	142680214	38235046	28	8830											
SLC36A3	285641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	150666921	150666921	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC36A3	NM_001145017	exon7	c.C717A	p.P239P	CAGGAAGGGCAGG	.	224	60	165	0	.	93	T	150666921	G	T	150666921	2	4	62	1	0	0	0	0	0	0	0	1	14595	987	35	3		3	SLC36A3	5	150666921	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	7986707	150666921	30248339	29	8831											
HAVCR1	26762	hgsc.bcm.edu;bcgsc.ca	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	447	33	367	0	.	92	T	156479571	C	T	156479571	3	4	62	1	0	0	0	0	1	0	0	0	6973	826	29	3	644	3	HAVCR1	5	156479571	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	5812650	156479571	24435689	30	8832											
MICA	100507436	hgsc.bcm.edu;bcgsc.ca	37	6	31380100	31380100	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001177519	exon5	c.893-2A>C	.	TTTTTCAGGGAAA	.	218	13	137	0	.	.	C	31380100	A	C	31380100	5	2	62	1	0	0	0	0	0	0	1	0	9568	202	7	5	909	5	MICA	6	31380100	Splice_Site	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		31380100	139734967	31	8833											
BMPER	168667	hgsc.bcm.edu;ucsc.edu	37	7	33976996	33976996	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BMPER	NM_133468	exon4	c.C315A	p.C105X	ACAGTGCAAAGGT	.	100	24	109	0	.	92	A	33976996	C	A	33976996	4	1	62	1	0	0	0	0	0	1	0	0	1468	718	25	3	325	3	BMPER	7	33976996	Nonsense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10		33976996	125161667	32	8834											
ABCA13	154664	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48313397	48313397	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCA13	NM_152701	exon17	c.A4134G	p.L1378L	CACGTTAAATTCC	.	82	20	66	0	.	521	G	48313397	A	G	48313397	2	3	62	1	0	0	0	0	0	0	0	1	31	359	13	2		2	ABCA13	7	48313397	Silent	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	14336401	48313397	110825266	33	8835											
IKZF1	10320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50467992	50467992	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IKZF1	NM_006060	exon8	c.C1227T	p.S409S	GCGCAGCGGTCTC	.	117	20	71	0	.	1242	T	50467992	C	T	50467992	2	4	62	1	0	0	0	0	0	0	0	1	7614	767	27	1		1	IKZF1	7	50467992	Silent	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	2154595	50467992	108670671	34	8836											
COL1A2	1278	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94043219	94043219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL1A2	NM_000089	exon28	c.G1625T	p.G542V	AAGGTGGAAAAGG	.	185	20	157	0	.	521	T	94043219	G	T	94043219	3	4	62	1	0	0	0	0	1	0	0	0	3678	1174	41	3	1735	3	COL1A2	7	94043219	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	43575227	94043219	65095444	35	8837											
AGK	55750	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141333731	141333731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AGK	NM_018238	exon10	c.A619T	p.T207S	GCAATGACCGGCC	.	59	19	34	0	.	290	T	141333731	A	T	141333731	3	4	62	1	0	0	0	0	1	0	0	0	383	275	10	4	653	4	AGK	7	141333731	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	47290512	141333731	17804932	36	8838											
SSPO	23145	hgsc.bcm.edu;bcgsc.ca	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon63	c.9204+1T>C	.	AGCAGCTGCGCAG	.	310	15	329	0	.	.	C	149506213	T	C	149506213	5	2	62	1	0	0	0	0	0	0	1	0	15188	1580	55	2	9451	2	SSPO	7	149506213	Splice_Site	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10	8172482	149506213	9632450	37	8839											
ZNF862	643641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	149558251	149558251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF862	NM_001099220	exon7	c.G2002A	p.D668N	ACAGCAGATGGGT	.	187	63	177	0	.	69	A	149558251	G	A	149558251	3	1	62	1	0	0	0	0	1	0	0	0	18192	942	33	3	2028	3	ZNF862	7	149558251	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	52038	149558251	9580412	38	8840											
TUSC3	7991	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	15398006	15398006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TUSC3	NM_178234	exon1	c.G67A	p.G23R	CCCACCGGGAGCT	.	198	79	152	0	.	516	A	15398006	G	A	15398006	3	1	62	1	0	0	0	0	1	0	0	0	16775	1116	39	1	69	1	TUSC3	8	15398006	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		15398006	130966016	39	8841											
GOT1L1	137362	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	37791908	37791908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GOT1L1	NM_152413	exon9	c.A1169G	p.Y390C	GTGATGTAATTTA	.	305	64	331	0	.	23	C	37791908	T	C	37791908	3	2	62	1	0	0	0	0	1	0	0	0	6580	1638	57	2	100	2	GOT1L1	8	37791908	Missense_Mutation	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10	22393902	37791908	108572114	40	8842											
FER1L6	654463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	125103757	125103757	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FER1L6	NM_001039112	exon34	c.C4485T	p.H1495H	CTTTCACCCTGGG	.	208	122	99	0	.	100	T	125103757	C	T	125103757	2	4	62	1	0	0	0	0	0	0	0	1	5815	506	18	3		3	FER1L6	8	125103757	Silent	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	87311849	125103757	21260265	41	8843											
SLC45A4	57210	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231725	142231725	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC45A4	NM_001080431	exon2	c.C228T	p.C76C	GCCAACGCAGAGG	.	217	32	101	0	.	70	A	142231725	G	A	142231725	2	1	62	1	0	0	0	0	0	0	0	1	14643	1079	38	1		1	SLC45A4	8	142231725	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	17127968	142231725	4132297	42	8844											
GHITM	27069	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85904722	85904722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GHITM	NM_014394	exon5	c.A433C	p.I145L	ATAGCAATCAGCA	.	182	67	175	0	.	90	C	85904722	A	C	85904722	3	2	62	1	0	0	0	0	1	0	0	0	6370	101	4	5	447	5	GHITM	10	85904722	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		85904722	49630025	43	8845											
ZFYVE27	118813	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99517436	99517436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZFYVE27	NM_001002261	exon11	c.G1142T	p.R381L	GCTCTCGATGCTG	.	172	57	158	0	.	91	T	99517436	G	T	99517436	3	4	62	1	0	0	0	0	1	0	0	0	17666	1058	37	1	1184	1	ZFYVE27	10	99517436	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	13612714	99517436	36017311	44	8846											
OR4C16	219428	hgsc.bcm.edu;bcgsc.ca	37	11	55339830	55339830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR4C16	NM_001004701	exon1	c.C227G	p.T76S	CCATAACCCCTAG	.	217	11	145	0	.	70	G	55339830	C	G	55339830	3	3	62	1	0	0	0	0	1	0	0	0	11049	507	18	4	229	4	OR4C16	11	55339830	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10		55339830	79666686	45	8847											
ATG2A	23130	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64664282	64664282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG2A	NM_015104	exon38	c.G5210T	p.R1737L	TTCTTGCGGATGT	.	143	27	109	0	.	69	A	64664282	C	A	64664282	3	1	62	1	0	0	0	0	1	0	0	0	1093	768	27	1	622	1	ATG2A	11	64664282	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	9324452	64664282	70342234	46	8848											
SYT12	91683	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66811279	66811279	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SYT12	NM_001177880	exon5	c.G792A	p.P264P	CCTCCCGCTGCAG	.	109	16	84	0	.	91	A	66811279	G	A	66811279	2	1	62	1	0	0	0	0	0	0	0	1	15465	1074	38	1		1	SYT12	11	66811279	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	2146997	66811279	68195237	47	8849											
HYOU1	10525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118926262	118926262	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HYOU1	NM_006389	exon4	c.G207A	p.P69P	GATCACCGGTGTT	.	152	20	107	0	.	90	T	118926262	C	T	118926262	2	4	62	1	0	0	0	0	0	0	0	1	7470	639	23	1		1	HYOU1	11	118926262	Silent	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	52114983	118926262	16080254	48	8850											
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	133711936	133711936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPATA19	NM_174927	exon6	c.T502C	p.X168R	GCTCTCAGCAGTC	.	117	41	66	0	.	90	G	133711936	A	G	133711936	3	3	62	1	0	0	0	0	1	0	0	0	15003	201	7	2	5	2	SPATA19	11	133711936	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	14785674	133711936	1294580	49	8851											
SENP1	29843	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48482714	48482714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SENP1	NM_001267594	exon5	c.T250C	p.S84P	CGCCTGAGCCAAG	.	100	38	67	0	.	660	G	48482714	A	G	48482714	3	3	62	1	0	0	0	0	1	0	0	0	14046	304	11	2	1737	2	SENP1	12	48482714	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		48482714	85369181	50	8852											
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49743118	49743118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAJC22	NM_024902	exon2	c.A463G	p.I155V	CTGCCCATTAGCG	.	86	18	54	0	.	159	G	49743118	A	G	49743118	3	3	62	1	0	0	0	0	1	0	0	0	4641	217	8	2	465	2	DNAJC22	12	49743118	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	1260404	49743118	84108777	51	8853											
SMARCC2	6601	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56565643	56565643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SMARCC2	NM_139067	exon21	c.C2005G	p.H669D	GAAAATGCAAGAT	.	106	20	93	0	.	229	C	56565643	G	C	56565643	3	2	62	1	0	0	0	0	1	0	0	0	14776	1319	46	4	1768	4	SMARCC2	12	56565643	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	6822525	56565643	77286252	52	8854											
RCBTB1	55213	broad.mit.edu;bcgsc.ca	37	13	50118925	50118925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RCBTB1	NM_018191	exon10	c.T1120C	p.F374L	TTCGAAACTTCAG	.	88	4	72	0	.	91	G	50118925	A	G	50118925	3	3	62	1	0	0	0	0	1	0	0	0	13171	43	2	2	491	2	RCBTB1	13	50118925	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		50118925	65050953	53	8855											
SLITRK6	84189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86369434	86369434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLITRK6	NM_032229	exon2	c.G1210A	p.E404K	ATCCTTCTTCAAG	.	107	13	40	0	.	137	T	86369434	C	T	86369434	3	4	62	1	0	0	0	0	1	0	0	0	14747	922	32	3	1319	3	SLITRK6	13	86369434	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	36250509	86369434	28800444	54	8856											
OR6S1	341799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21109487	21109487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR6S1	NM_001001968	exon1	c.G364A	p.A122T	GATCCGCAGACAT	.	118	23	114	0	.	70	T	21109487	C	T	21109487	3	4	62	1	0	0	0	0	1	0	0	0	11209	710	25	3	635	3	OR6S1	14	21109487	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10		21109487	86240053	55	8857											
HECTD1	25831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	31626433	31626433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HECTD1	NM_015382	exon11	c.G1699A	p.D567N	CAACATCAGAATC	.	188	70	194	0	.	570	T	31626433	C	T	31626433	3	4	62	1	0	0	0	0	1	0	0	0	7039	826	29	3	6265	3	HECTD1	14	31626433	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	10516946	31626433	75723107	56	8858											
LTBP2	4053	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75018978	75018978	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LTBP2	NM_000428	exon6	c.G1311A	p.E437E	TGGAGGCTCCCTG	.	117	24	102	1	.	92	T	75018978	C	T	75018978	2	4	62	1	0	0	0	0	0	0	0	1	9074	796	28	3		3	LTBP2	14	75018978	Silent	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	43392545	75018978	32330562	57	8859											
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102349777	102349777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPP2R5C	NM_001161726	exon7	c.G672A	p.E224E	TTTAGAGCTCTTT	.	91	15	94	0	.	659	A	102349777	G	A	102349777	2	1	62	1	0	0	0	0	0	0	0	1	12394	962	34	3		3	PPP2R5C	14	102349777	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	27330799	102349777	4999763	58	8860											
DYNC1H1	1778	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102489191	102489191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DYNC1H1	NM_001376	exon43	c.A8611G	p.I2871V	CGACCCATCTTGT	.	125	22	128	0	.	98	G	102489191	A	G	102489191	3	3	62	1	0	0	0	0	1	0	0	0	4841	217	8	2	8781	2	DYNC1H1	14	102489191	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	139414	102489191	4860349	59	8861											
TMEM62	80021	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43446967	43446967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEM62	NM_024956	exon9	c.G1120C	p.V374L	ATTTTCGTACTGA	.	152	15	101	0	.	136	C	43446967	G	C	43446967	3	2	62	1	0	0	0	0	1	0	0	0	16186	1145	40	4	1154	4	TMEM62	15	43446967	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		43446967	59084425	60	8862											
DUOX2	50506	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45386375	45386375	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DUOX2	NM_014080	exon34	c.C4620T	p.H1540H	CATGAAGTGGGCT	.	171	50	126	0	.	95	A	45386375	G	A	45386375	2	1	62	1	0	0	0	0	0	0	0	1	4801	1020	36	3		3	DUOX2	15	45386375	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	1939408	45386375	57145017	61	8863											
CCDC33	80125	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	74560701	74560701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC33	NM_025055	exon5	c.G448A	p.A150T	GGGAAAGCCGATG	.	160	42	131	0	.	95	A	74560701	G	A	74560701	3	1	62	1	0	0	0	0	1	0	0	0	2806	971	34	3	466	3	CCDC33	15	74560701	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	29174326	74560701	27970691	62	8864											
TNRC6A	27327	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	24826473	24826473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNRC6A	NM_014494	exon19	c.A4678C	p.I1560L	GGTGCTATTTCAA	.	214	60	178	0	.	92	C	24826473	A	C	24826473	3	2	62	1	0	0	0	0	1	0	0	0	16337	449	16	5	4752	5	TNRC6A	16	24826473	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		24826473	65528280	63	8865											
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578460	7578460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	TP53,head_neck,carcinoma,-1	TP53	NM_000546	exon5	c.T470G	p.V157G	GCGCGGACGCGGG	.	93	34	145	0	.	70225	C	7578460	A	C	7578460	3	2	62	1	0	0	0	0	1	0	0	0	16378	275	10	5	828	5	TP53	17	7578460	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10		7578460	73616750	64	8866											
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	8455401	8455401	+	Silent	SNP	A	A	G	rs200432425		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYH10	NM_001256012	exon9	c.T882C	p.F294F	CTGGTAAAAGATA	.	91	7	124	0	A|0.999;G|0.001	92	G	8455401	A	G	8455401	2	3	62	1	0	0	0	0	0	0	0	1	10030	11	1	2		2	MYH10	17	8455401	Silent	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	876941	8455401	72739809	65	8867											
TNS4	84951	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38652631	38652631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNS4	NM_032865	exon2	c.T47C	p.V16A	AAGCTGACAGCAT	.	67	15	77	1	.	155	G	38652631	A	G	38652631	3	3	62	1	0	0	0	0	1	0	0	0	16342	275	10	2	2148	2	TNS4	17	38652631	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	30197230	38652631	42542579	66	8868											
MBD1	4152	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47796066	47796066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MBD1	NM_001204136	exon16	c.C1901T	p.S634L	GGTGGTGAGAGAC	.	207	52	171	1	.	228	A	47796066	G	A	47796066	3	1	62	1	0	0	0	0	1	0	0	0	9342	1294	45	3	70	3	MBD1	18	47796066	Missense_Mutation	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		47796066	30281182	67	8869											
GALR1	2587	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	74962810	74962810	+	Silent	SNP	G	G	A	rs5375	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GALR1	NM_001480	exon1	c.G306A	p.V102V	CTGGGTGCTGGGC	.	182	55	127	0	G|0.936;T|0.064	522	A	74962810	G	A	74962810	2	1	62	1	0	0	0	0	0	0	0	1	6227	1306	46	3		3	GALR1	18	74962810	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10	27166744	74962810	3114438	68	8870											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6718129	6718129	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3	NM_000064	exon4	c.C480T	p.G160G	CGTCCGGCCCACG	.	98	31	91	0	.	95	A	6718129	G	A	6718129	2	1	62	1	0	0	0	0	0	0	0	1	2204	1190	42	3		3	C3	19	6718129	Silent	SNP	G	TCGA-DD-A1EG-01A-11D-A20W-10		6718129	52410854	69	8871											
OR7A10	390892	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14952035	14952035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR7A10	NM_001005190	exon1	c.T655G	p.S219A	TCTTAGAGTAAGA	.	65	15	43	0	.	68	C	14952035	A	C	14952035	3	2	62	1	0	0	0	0	1	0	0	0	11214	304	11	5	278	5	OR7A10	19	14952035	Missense_Mutation	SNP	A	TCGA-DD-A1EG-01A-11D-A20W-10	8233906	14952035	44176948	70	8872											
CIB3	117286	hgsc.bcm.edu;bcgsc.ca	37	19	16275656	16275656	+	Missense_Mutation	SNP	C	C	T	rs200526470		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CIB3	NM_054113	exon5	c.G415A	p.G139R	TCAGCCCCCCCCG	.	171	12	159	0	.	131	T	16275656	C	T	16275656	3	4	62	1	0	0	0	0	1	0	0	0	3422	623	22	3	156	3	CIB3	19	16275656	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	1323621	16275656	42853327	71	8873											
TMPRSS15	5651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19770597	19770597	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMPRSS15	NM_002772	exon2	c.A195G	p.T65T	TCCGGATGTTATT	.	71	23	44	0	.	160	C	19770597	T	C	19770597	2	2	62	1	0	0	0	0	0	0	0	1	16243	1451	51	2		2	TMPRSS15	21	19770597	Silent	SNP	T	TCGA-DD-A1EG-01A-11D-A20W-10		19770597	28359298	72	8874											
PCBP3	54039	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	21	47320946	47320946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCBP3	NM_001130141	exon5	c.C258A	p.C86X	AAACTGCCCAGAG	.	90	13	93	0	.	227	A	47320946	C	A	47320946	4	1	62	1	0	0	0	0	0	1	0	0	11502	747	26	3	276	3	PCBP3	21	47320946	Nonsense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10	27550349	47320946	808949	73	8875											
FGF13	2258	ucsc.edu;bcgsc.ca	37	X	137717737	137717737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FGF13	NM_001139500	exon6	c.G512A	p.R171H	TGCTGACGGTATA	.	168	60	118	1	.	626	T	137717737	C	T	137717737	3	4	62	1	0	0	0	0	1	0	0	0	5842	536	19	1	263	1	FGF13	23	137717737	Missense_Mutation	SNP	C	TCGA-DD-A1EG-01A-11D-A20W-10		137717737	17552823	74	8876											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27105550	27105550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	ARID1A,NS,carcinoma,0	ARID1A	NM_006015	exon20	c.C5161T	p.R1721X	TATTTCCGACGAT	.	234	117	122	0	.	584	T	27105550	C	T	27105550	4	4	63	1	0	0	0	0	0	1	0	0	913	644	23	1	5239	1	ARID1A	1	27105550	Nonsense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10		27105550	222145071	1	8877											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106893	27106894	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ARID1A	NM_006015	exon20	c.6504_6505insT	p.V2168fs	GGCTGTGGTACTG	.	73	16	49	0	.	584	T	27106894	-	T	27106893	7	5	63	1	0	1	1	0	0	0	0	0	913	1335	47	0	6582	0	ARID1A	1	27106893	Frame_Shift_Ins	INS	-	TCGA-DD-A1EH-01A-11D-A12Z-10	1343	27106893	222143728	2	8878											
NFIA	4774	broad.mit.edu;bcgsc.ca	37	1	61920983	61920983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NFIA	NM_005595	exon10	c.C1429T	p.P477S	CTGGTACCTGGGA	.	120	8	77	0	.	92	T	61920983	C	T	61920983	3	4	63	1	0	0	0	0	1	0	0	0	10370	519	18	3	1709	3	NFIA	1	61920983	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	34814090	61920983	187329638	3	8879											
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152785040	152785040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	LCE1B	NM_178349	exon1	c.G118T	p.V40F	CCTCCAGTCTCTT	.	839	180	100	0	.	68	T	152785040	G	T	152785040	3	4	63	1	0	0	0	0	1	0	0	0	8660	1029	36	3	120	3	LCE1B	1	152785040	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	90864057	152785040	96465581	4	8880											
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248366773	248366773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	OR2M3	NM_001004689	exon1	c.T404C	p.L135P	CCAATCTCATGAG	.	911	202	147	0	.	70	C	248366773	T	C	248366773	3	2	63	1	0	0	0	0	1	0	0	0	11011	1551	54	2	406	2	OR2M3	1	248366773	Missense_Mutation	SNP	T	TCGA-DD-A1EH-01A-11D-A12Z-10	95581733	248366773	883848	5	8881											
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103068506	103068506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IL18RAP	NM_003853	exon12	c.G1665T	p.M555I	CAAAATGCGCTAC	.	152	61	67	0	.	95	T	103068506	G	T	103068506	3	4	63	1	0	0	0	0	1	0	0	0	7648	1319	46	3	1703	3	IL18RAP	2	103068506	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		103068506	140130867	6	8882											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160833216	160833216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PLA2R1	NM_001195641	exon16	c.T2417C	p.I806T	AACGGAATCTTGG	.	250	115	121	0	.	93	G	160833216	A	G	160833216	3	3	63	1	0	0	0	0	1	0	0	0	12010	101	4	2	2042	2	PLA2R1	2	160833216	Missense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10	57764710	160833216	82366157	7	8883											
TNS1	7145	hgsc.bcm.edu;ucsc.edu	37	2	218696257	218696257	+	Silent	SNP	C	C	T	rs146820371		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TNS1	NM_022648	exon20	c.G2919A	p.P973P	CAGACCCGGGGGG	.	35	18	16	0	C|1.000;T|0.000	156	T	218696257	C	T	218696257	2	4	63	1	0	0	0	0	0	0	0	1	16340	639	23	1		1	TNS1	2	218696257	Silent	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	57863041	218696257	24503116	8	8884											
IQCA1	79781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	237300683	237300683	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IQCA1	NM_001270585	exon11	c.1370delA	p.N457fs	TTTAAGTTTTTAA	.	344	149	114	0	.	23	-	237300683	T	-	237300683	7	5	63	1	0	1	0	1	0	0	0	0	7802	1725	60	0	1155	0	IQCA1	2	237300683	Frame_Shift_Del	DEL	T	TCGA-DD-A1EH-01A-11D-A12Z-10	18604426	237300683	5898690	9	8885											
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164750329	164750329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SI	NM_001041	exon24	c.C2717T	p.T906I	TCATAAGTGAAAT	.	96	35	49	0	.	104	A	164750329	G	A	164750329	3	1	63	1	0	0	0	0	1	0	0	0	14297	1029	36	3	2866	3	SI	3	164750329	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		164750329	33272101	10	8886											
COL25A1	84570	ucsc.edu;bcgsc.ca	37	4	109740482	109740482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	COL25A1	NM_198721	exon35	c.T1849C	p.F617L	CACGGAATCCCTG	.	24	4	20	0	.	92	G	109740482	A	G	109740482	3	3	63	1	0	0	0	0	1	0	0	0	3684	101	4	2	127	2	COL25A1	4	109740482	Missense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10		109740482	81413794	11	8887											
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185320192	185320192	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IRF2	NM_002199	exon7	c.G571T	p.E191X	CAATCTCTTGATT	.	104	88	73	0	.	91	A	185320192	C	A	185320192	4	1	63	1	0	0	0	0	0	1	0	0	7828	922	32	3	490	3	IRF2	4	185320192	Nonsense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	75579710	185320192	5834084	12	8888											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82833574	82833574	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	VCAN	NM_004385	exon8	c.C4752T	p.P1584P	CACTCCCACTATA	.	119	30	77	0	.	238	T	82833574	C	T	82833574	2	4	63	1	0	0	0	0	0	0	0	1	17135	581	21	3		3	VCAN	5	82833574	Silent	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10		82833574	98081686	13	8889											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127681089	127681089	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	FBN2	NM_001999	exon24	c.T3177A	p.A1059A	TCGGTTAGCAAAG	.	93	26	45	0	.	146	T	127681089	A	T	127681089	2	4	63	1	0	0	0	0	0	0	0	1	5703	407	15	4		4	FBN2	5	127681089	Silent	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10	44847515	127681089	53234171	14	8890											
RBM27	54439	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145641135	145641135	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RBM27	NM_018989	exon13	c.G1956A	p.R652R	GGCCAGGAAAGCC	.	236	83	95	1	.	70	A	145641135	G	A	145641135	2	1	63	1	0	0	0	0	0	0	0	1	13127	1165	41	3		3	RBM27	5	145641135	Silent	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	17960046	145641135	35274125	15	8891											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	12125147	12125148	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	HIVEP1	NM_002114	exon4	c.5119_5120insA	p.E1707fs	CTATGTGAAAATG	.	246	43	63	0	.	139	A	12125148	-	A	12125147	7	5	63	1	0	1	1	0	0	0	0	0	7186	1291	45	0	5129	0	HIVEP1	6	12125147	Frame_Shift_Ins	INS	-	TCGA-DD-A1EH-01A-11D-A12Z-10		12125147	158989920	16	8892											
COL12A1	1303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75893307	75893307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	COL12A1	NM_004370	exon10	c.C1350A	p.S450R	CCCAATGCTATAG	.	94	58	88	1	.	142	T	75893307	G	T	75893307	3	4	63	1	0	0	0	0	1	0	0	0	3669	1310	46	3	8069	3	COL12A1	6	75893307	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	63768160	75893307	95221760	17	8893											
UBE2J1	51465	ucsc.edu;bcgsc.ca	37	6	90053415	90053415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	UBE2J1	NM_016021	exon2	c.C92A	p.A31E	GGCTGCGCATGGT	.	38	4	38	0	.	226	T	90053415	G	T	90053415	3	4	63	1	0	0	0	0	1	0	0	0	16857	1087	38	1	892	1	UBE2J1	6	90053415	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	14160108	90053415	81061652	18	8894											
TPD52L1	7164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	125584076	125584076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TPD52L1	NM_003287	exon7	c.C583T	p.R195W	GGCTCCCGGCGGA	.	18	10	16	0	.	90	T	125584076	C	T	125584076	3	4	63	1	0	0	0	0	1	0	0	0	16395	643	23	1	609	1	TPD52L1	6	125584076	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	35530661	125584076	45530991	19	8895											
ARHGAP18	93663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129927037	129927037	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ARHGAP18	NM_033515	exon10	c.C1350T	p.N450N	GTCCCTGTTTGCA	.	89	65	68	0	.	230	A	129927037	G	A	129927037	2	1	63	1	0	0	0	0	0	0	0	1	868	1368	48	3		3	ARHGAP18	6	129927037	Silent	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	4342961	129927037	41188030	20	8896											
INHBA	3624	bcgsc.ca;mdanderson.org	37	7	41729607	41729607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	INHBA	NM_002192	exon3	c.C922T	p.R308C	GCCGACGCCGGCG	.	65	38	32	1	.	703	A	41729607	G	A	41729607	3	1	63	1	0	0	0	0	1	0	0	0	7741	1087	38	1	362	1	INHBA	7	41729607	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		41729607	117409056	21	8897											
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64167564	64167564	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZNF107	NM_016220	exon7	c.T882C	p.H294H	AATTCATACTGGA	.	81	40	43	0	.	69	C	64167564	T	C	64167564	2	2	63	1	0	0	0	0	0	0	0	1	17712	1403	49	2		2	ZNF107	7	64167564	Silent	SNP	T	TCGA-DD-A1EH-01A-11D-A12Z-10	22437957	64167564	94971099	22	8898											
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	107315471	107315471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SLC26A4	NM_000441	exon6	c.G682T	p.A228S	GCTGCTGCCTTCC	.	310	23	108	0	.	96	T	107315471	G	T	107315471	3	4	63	1	0	0	0	0	1	0	0	0	14519	1319	46	3	700	3	SLC26A4	7	107315471	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	43147907	107315471	51823192	23	8899											
OR6B1	135946	ucsc.edu;bcgsc.ca	37	7	143701970	143701970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	OR6B1	NM_001005281	exon1	c.A881G	p.E294G	ACCGAGAGGTCAA	.	68	6	38	0	.	91	G	143701970	A	G	143701970	3	3	63	1	0	0	0	0	1	0	0	0	11187	304	11	2	883	2	OR6B1	7	143701970	Missense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10	36386499	143701970	15436693	24	8900											
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77339554	77339554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TRPM6	NM_017662	exon39	c.C6044A	p.S2015Y	TCTGGGGAATTTC	.	265	98	107	1	.	335	T	77339554	G	T	77339554	3	4	63	1	0	0	0	0	1	0	0	0	16587	1174	41	3	28	3	TRPM6	9	77339554	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		77339554	63873877	25	8901											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79867172	79867172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	VPS13A	NM_001018038	exon22	c.G2192A	p.R731Q	AAGCACGAAAACT	.	139	64	61	0	.	161	A	79867172	G	A	79867172	3	1	63	1	0	0	0	0	1	0	0	0	17186	1058	37	1	2278	1	VPS13A	9	79867172	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	2527618	79867172	61346259	26	8902											
ASAH2	56624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52008360	52008360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ASAH2	NM_001143974	exon1	c.G11A	p.R4H	AAGGTGCGTTTGG	.	104	37	65	0	.	90	T	52008360	C	T	52008360	3	4	63	1	0	0	0	0	1	0	0	0	1007	768	27	1	2411	1	ASAH2	10	52008360	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10		52008360	83526387	27	8903											
C11orf16	56673	broad.mit.edu;bcgsc.ca	37	11	8947522	8947522	+	Missense_Mutation	SNP	C	C	T	rs148052847		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	C11orf16	NM_020643	exon5	c.G692A	p.R231K	TGCTCCCTGGTGA	.	80	5	43	0	C|1.000;T|0.000	92	T	8947522	C	T	8947522	3	4	63	1	0	0	0	0	1	0	0	0	1631	681	24	3	719	3	C11orf16	11	8947522	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10		8947522	126058994	28	8904											
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10821282	10821282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	EIF4G2	NM_001172705	exon19	c.G2141A	p.R714H	AACATGCGGTCCT	.	112	18	55	0	.	91	T	10821282	C	T	10821282	3	4	63	1	0	0	0	0	1	0	0	0	5037	768	27	1	598	1	EIF4G2	11	10821282	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	1873760	10821282	124185234	29	8905											
C11orf74	119710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36669639	36669642	+	Frame_Shift_Del	DEL	CCAG	CCAG	-	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	CCAG	CCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	C11orf74	NM_138787	exon5	c.432_435del	p.144_145del	TGTGGCCCAGCCT	.	75	14	35	0	.	68	-	36669642	CCAG	-	36669639	7	5	63	1	0	1	0	1	0	0	0	0	1662	610	22	0	446	0	C11orf74	11	36669639	Frame_Shift_Del	DEL	CCAG	TCGA-DD-A1EH-01A-11D-A12Z-10	25848357	36669639	98336877	30	8906	49	2									
C11orf74	119710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36669648	36669649	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	C11orf74	NM_138787	exon5	c.441_442insC	p.D147fs	GCCTCCTACCTGT	.	65	18	30	0	.	68	C	36669649	-	C	36669648	7	5	63	1	0	1	1	0	0	0	0	0	1662	1509	53	0	455	0	C11orf74	11	36669648	Frame_Shift_Ins	INS	-	TCGA-DD-A1EH-01A-11D-A12Z-10	9	36669648	98336868	31	8907	49	2									
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62566040	62566040	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NXF1	NM_006362	exon11	c.C1024G	p.R342G	GTTCGCGAATGGC	.	99	49	49	0	.	228	C	62566040	G	C	62566040	3	2	63	1	0	0	0	0	1	0	0	0	10782	1058	37	4	879	4	NXF1	11	62566040	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	25896392	62566040	72440476	32	8908											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76917166	76917166	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MYO7A	NM_000260	exon41	c.G5661A	p.P1887P	CCCTCCGCACCTG	.	84	32	37	0	.	138	A	76917166	G	A	76917166	2	1	63	1	0	0	0	0	0	0	0	1	10082	1074	38	1		1	MYO7A	11	76917166	Silent	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	14351126	76917166	58089350	33	8909											
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124763622	124763622	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ROBO4	NM_019055	exon10	c.G1509T	p.L503L	TCTGTACAGACCT	.	283	106	93	0	.	92	A	124763622	C	A	124763622	2	1	63	1	0	0	0	0	0	0	0	1	13516	465	17	3		3	ROBO4	11	124763622	Silent	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	47846456	124763622	10242894	34	8910											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134029862	134029862	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NCAPD3	NM_015261	exon29	c.C3792T	p.V1264V	CTCCTGGACCAGC	.	117	60	43	0	.	229	A	134029862	G	A	134029862	2	1	63	1	0	0	0	0	0	0	0	1	10206	1161	41	3		3	NCAPD3	11	134029862	Silent	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	9266240	134029862	976654	35	8911											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64989700	64989700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZBTB1	NM_014950	exon2	c.A1478G	p.N493S	AAGAGAATCCTGA	.	98	44	50	0	.	91	G	64989700	A	G	64989700	3	3	63	1	0	0	0	0	1	0	0	0	17519	101	4	2	1480	2	ZBTB1	14	64989700	Missense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10		64989700	42359840	36	8912											
ZDHHC22	283576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77606003	77606003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	NM_174976	exon2	c.C79T	p.L27F	GGAAGAGCTGCAG	.	57	20	26	0	.	.	A	77606003	G	A	77606003	3	1	63	1	0	0	0	0	1	0	0	0	17610	971	34	3	720	3	ZDHHC22	14	77606003	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	12616303	77606003	29743537	37	8913											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81744756	81744756	+	Missense_Mutation	SNP	G	G	A	rs201611443		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	STON2	NM_001256430	exon6	c.C899T	p.T300M	GAAGGCGTGCGGT	.	118	15	61	0	.	95	A	81744756	G	A	81744756	3	1	63	1	0	0	0	0	1	0	0	0	15317	1145	40	1	1824	1	STON2	14	81744756	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	4138753	81744756	25604784	38	8914											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101348750	101348750	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RTL1	NM_001134888	exon1	c.C2376T	p.N792N	CATGACGTTCTTG	.	159	69	56	0	.	46	A	101348750	G	A	101348750	2	1	63	1	0	0	0	0	0	0	0	1	13724	1136	40	1		1	RTL1	14	101348750	Silent	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	19603994	101348750	6000790	39	8915											
PACS2	23241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105858084	105858084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PACS2	NM_001100913	exon22	c.G2236A	p.G746R	GTGAGCGGAGGCC	.	80	28	19	0	.	69	A	105858084	G	A	105858084	3	1	63	1	0	0	0	0	1	0	0	0	11373	1117	39	1	2285	1	PACS2	14	105858084	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	4509334	105858084	1491456	40	8916											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	30012108	30012108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TJP1	NM_003257	exon20	c.C2876T	p.P959L	GGGGTGGGCTCCT	.	268	119	93	0	.	95	A	30012108	G	A	30012108	3	1	63	1	0	0	0	0	1	0	0	0	15926	1232	43	3	2406	3	TJP1	15	30012108	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		30012108	72519284	41	8917											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	347071	347072	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	AXIN1	NM_003502	exon7	c.1940_1941insC	p.R647fs	GTCCTGCGGTGCC	.	66	49	36	0	.	684	G	347072	-	G	347071	7	5	63	1	0	1	1	0	0	0	0	0	1236	768	27	0	668	0	AXIN1	16	347071	Frame_Shift_Ins	INS	-	TCGA-DD-A1EH-01A-11D-A12Z-10		347071	90007682	42	8918											
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	50357576	50357576	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	BRD7	NM_013263	exon12	c.T1365G	p.Y455X	ATACGGATAATCT	.	68	46	55	0	.	90	C	50357576	A	C	50357576	4	2	63	1	0	0	0	0	0	1	0	0	1505	340	12	5	617	5	BRD7	16	50357576	Nonsense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10	50010505	50357576	39997177	43	8919											
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45387555	45387555	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ITGB3	NM_000212	exon15	c.G2352C	p.T784T	TATCACGTACCGG	.	237	100	76	0	.	714	C	45387555	G	C	45387555	2	2	63	1	0	0	0	0	0	0	0	1	7895	1132	40	4		4	ITGB3	17	45387555	Silent	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		45387555	35807655	44	8920											
EPN3	55040	hgsc.bcm.edu;ucsc.edu	37	17	48614425	48614425	+	Missense_Mutation	SNP	C	C	T	rs146173668		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	EPN3	NM_017957	exon2	c.C508T	p.R170C	TTCAGCCGCCGCT	.	44	19	14	0	C|1.000;T|0.000	91	T	48614425	C	T	48614425	3	4	63	1	0	0	0	0	1	0	0	0	5187	652	23	1	510	1	EPN3	17	48614425	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	3226870	48614425	32580785	45	8921											
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	52991114	52991114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TOM1L1	NM_005486	exon5	c.G378C	p.W126C	GACTTGGTCACAG	.	146	69	69	0	.	91	C	52991114	G	C	52991114	3	2	63	1	0	0	0	0	1	0	0	0	16349	1270	44	4	396	4	TOM1L1	17	52991114	Missense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10	4376689	52991114	28204096	46	8922											
PSMC5	5705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61908431	61908431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PSMC5	NM_002805	exon8	c.C715T	p.R239W	ATGGCACGGGAAC	.	118	34	51	0	.	178	T	61908431	C	T	61908431	3	4	63	1	0	0	0	0	1	0	0	0	12690	527	19	1	745	1	PSMC5	17	61908431	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	8917317	61908431	19286779	47	8923											
NOL11	25926	ucsc.edu;bcgsc.ca	37	17	65720207	65720207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NOL11	NM_015462	exon6	c.A562G	p.I188V	TCACGTATCTTAA	.	43	4	29	0	.	90	G	65720207	A	G	65720207	3	3	63	1	0	0	0	0	1	0	0	0	10521	449	16	2	584	2	NOL11	17	65720207	Missense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10	3811776	65720207	15475003	48	8924											
MAPK4	5596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	48190630	48190630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MAPK4	NM_002747	exon2	c.C302T	p.A101V	GCGTGGCGTACAT	.	36	14	15	0	.	1404	T	48190630	C	T	48190630	3	4	63	1	0	0	0	0	1	0	0	0	9280	768	27	1	304	1	MAPK4	18	48190630	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10		48190630	29886618	49	8925											
ADAM33	80332	ucsc.edu;bcgsc.ca	37	20	3655233	3655233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ADAM33	NM_025220	exon6	c.T518C	p.L173P	CAGGTGAGCAGCT	.	47	5	32	0	.	291	G	3655233	A	G	3655233	3	3	63	1	0	0	0	0	1	0	0	0	250	304	11	2	1991	2	ADAM33	20	3655233	Missense_Mutation	SNP	A	TCGA-DD-A1EH-01A-11D-A12Z-10		3655233	59370287	50	8926											
GMEB2	26205	broad.mit.edu;bcgsc.ca	37	20	62221645	62221645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	GMEB2	NM_012384	exon10	c.G1390C	p.D464H	TACCGTCCTGCAC	.	99	6	41	0	.	90	G	62221645	C	G	62221645	3	3	63	1	0	0	0	0	1	0	0	0	6488	855	30	4	206	4	GMEB2	20	62221645	Missense_Mutation	SNP	C	TCGA-DD-A1EH-01A-11D-A12Z-10	58566412	62221645	803875	51	8927											
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	20252926	20252926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RPS6KA3	NM_004586	exon2	c.C76T	p.Q26X	TTTGCTGTCCATT	.	243	204	108	0	.	1504	A	20252926	G	A	20252926	4	1	63	1	0	0	0	0	0	1	0	0	13652	1386	48	3	2230	3	RPS6KA3	23	20252926	Nonsense_Mutation	SNP	G	TCGA-DD-A1EH-01A-11D-A12Z-10		20252926	135017634	52	8928											
CYP4Z1	199974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47571829	47571829	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CYP4Z1	NM_178134	exon9	c.C1097G	p.T366R	ACACCACGATGTG	.	308	107	225	0	.	91	G	47571829	C	G	47571829	3	3	64	1	0	0	0	0	1	0	0	0	4194	536	19	4	1131	4	CYP4Z1	1	47571829	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10		47571829	201678792	1	8929											
FAM151A	338094	broad.mit.edu;ucsc.edu	37	1	55075294	55075294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAM151A	NM_176782	exon8	c.G1405T	p.E469X	AGACCTCAGCCAC	.	27	3	16	0	.	90	A	55075294	C	A	55075294	4	1	64	1	0	0	0	0	0	1	0	0	5458	835	29	3	356	3	FAM151A	1	55075294	Nonsense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	7503465	55075294	194175327	2	8930											
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67787396	67787396	+	Missense_Mutation	SNP	C	C	A	rs149868445	byfrequency;alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	IL12RB2	NM_001559	exon3	c.C188A	p.S63Y	ACTATTCCAGACG	.	204	65	185	0	C|1.000;T|0.000	92	A	67787396	C	A	67787396	3	1	64	1	0	0	0	0	1	0	0	0	7627	855	30	3	194	3	IL12RB2	1	67787396	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	12712102	67787396	181463225	3	8931											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103491141	103491141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	COL11A1	NM_080629	exon7	c.A962G	p.Y321C	TAGTTGTATTCTT	.	443	67	329	0	.	586	C	103491141	T	C	103491141	3	2	64	1	0	0	0	0	1	0	0	0	3667	1638	57	2	4738	2	COL11A1	1	103491141	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	35703745	103491141	145759480	4	8932											
FAM63A	55793	hgsc.bcm.edu;broad.mit.edu	37	1	150974678	150974679	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAM63A	NM_001163258	exon3	c.560_561insCTC	p.L187delinsPL	GCAAGGAGAGGGC	.	268	63	197	0	.	91	GAG	150974679	-	GAG	150974678	7	5	64	1	0	1	1	0	0	0	0	0	5596	304	11	0	1029	0	FAM63A	1	150974678	In_Frame_Ins	INS	-	TCGA-DD-A1EI-01A-11D-A12Z-10	47483537	150974678	98275943	5	8933											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151262327	151262328	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF687	NM_020832	exon6	c.2808_2809insC	p.E936fs	CCCTGAGCCCCCC	.	105	17	94	0	.	92	C	151262328	-	C	151262327	7	5	64	1	0	1	1	0	0	0	0	0	18089	962	34	0	2826	0	ZNF687	1	151262327	Frame_Shift_Ins	INS	-	TCGA-DD-A1EI-01A-11D-A12Z-10	287649	151262327	97988294	6	8934											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155308071	155308071	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASH1L	NM_018489	exon27	c.A8612C	p.N2871T	ATCTCATTGGCTG	.	192	57	127	0	.	234	G	155308071	T	G	155308071	3	3	64	1	0	0	0	0	1	0	0	0	1041	1493	52	5	290	5	ASH1L	1	155308071	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	4045744	155308071	93942550	7	8935											
SLAMF6	114836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160461021	160461021	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLAMF6	NM_052931	exon3	c.T540C	p.T180T	GGAGACAGTGAGG	.	238	71	181	0	.	228	G	160461021	A	G	160461021	2	3	64	1	0	0	0	0	0	0	0	1	14368	175	7	2		2	SLAMF6	1	160461021	Silent	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	5152950	160461021	88789600	8	8936											
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196274453	196274458	+	In_Frame_Del	DEL	TAATAC	TAATAC	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	TAATAC	TAATAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KCNT2	NM_198503	exon22	c.2501_2506del	p.834_836del	CTGTGATAATACT	.	109	17	86	0	.	159	-	196274458	TAATAC	-	196274453	7	5	64	1	0	1	0	1	0	0	0	0	8092	1406	49	0	929	0	KCNT2	1	196274453	In_Frame_Del	DEL	TAATAC	TCGA-DD-A1EI-01A-11D-A12Z-10	35813432	196274453	52976168	9	8937											
MFSD2B	388931	ucsc.edu;bcgsc.ca	37	2	24247135	24247135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MFSD2B	NM_001080473	exon13	c.T1484C	p.L495P	TGAGCCTTCGGAG	.	65	6	47	0	.	24	C	24247135	T	C	24247135	3	2	64	1	0	0	0	0	1	0	0	0	9531	1609	56	2	1534	2	MFSD2B	2	24247135	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10		24247135	218952238	10	8938											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	50758388	50758388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NRXN1	NM_001135659	exon12	c.G2444A	p.R815H	TTCACACGTCCTG	.	101	20	78	0	.	92	T	50758388	C	T	50758388	3	4	64	1	0	0	0	0	1	0	0	0	10665	536	19	1	2514	1	NRXN1	2	50758388	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	26511253	50758388	192440985	11	8939											
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60688821	60688821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	BCL11A	NM_018014	exon4	c.T1226G	p.L409R	TCGCACAGGTTGC	.	132	29	118	0	.	1149	C	60688821	A	C	60688821	3	2	64	1	0	0	0	0	1	0	0	0	1363	188	7	5	1391	5	BCL11A	2	60688821	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	9930433	60688821	182510552	12	8940											
KRCC1	51315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88327723	88327723	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KRCC1	NM_016618	exon4	c.T360C	p.F120F	TTGATTAAAGTTC	.	497	135	348	1	.	69	G	88327723	A	G	88327723	2	3	64	1	0	0	0	0	0	0	0	1	8441	359	13	2		2	KRCC1	2	88327723	Silent	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	27638902	88327723	154871650	13	8941											
PER2	8864	broad.mit.edu;bcgsc.ca	37	2	239155099	239155099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PER2	NM_022817	exon23	c.T3685C	p.S1229P	CCAGAGAAGGAAT	.	148	6	106	0	.	154	G	239155099	A	G	239155099	3	3	64	1	0	0	0	0	1	0	0	0	11730	246	9	2	86	2	PER2	2	239155099	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	150827376	239155099	4044274	14	8942											
SETD2	29072	broad.mit.edu;bcgsc.ca	37	3	47163442	47163442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SETD2	NM_014159	exon3	c.T2684C	p.L895P	AGAGTTAGACTGT	.	116	7	53	0	.	1273	G	47163442	A	G	47163442	3	3	64	1	0	0	0	0	1	0	0	0	14131	420	15	2	5086	2	SETD2	3	47163442	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		47163442	150858988	15	8943											
GNAT1	2779	broad.mit.edu;mdanderson.org	37	3	50231028	50231028	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GNAT1	NM_144499	exon4	c.G381A	p.W127X	GCTGTGGAAGGAC	.	52	6	43	0	.	417	A	50231028	G	A	50231028	4	1	64	1	0	0	0	0	0	1	0	0	6511	1183	41	3	395	3	GNAT1	3	50231028	Nonsense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	3067586	50231028	147791402	16	8944											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52393977	52393977	+	Nonsense_Mutation	SNP	C	C	T	rs200763734	alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH1	NM_015512	exon27	c.C4453T	p.Q1485X	CGCATGCAGCGGG	.	129	38	111	0	C|0.998;G|0.002	67	T	52393977	C	T	52393977	4	4	64	1	0	0	0	0	0	1	0	0	4597	711	25	3	4555	3	DNAH1	3	52393977	Nonsense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	2162949	52393977	145628453	17	8945											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154886382	154886382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MME	NM_007287	exon19	c.A1882C	p.N628H	TATGGAAACTTTT	.	393	100	235	0	.	516	C	154886382	A	C	154886382	3	2	64	1	0	0	0	0	1	0	0	0	9645	14	1	5	1952	5	MME	3	154886382	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	102492405	154886382	43136048	18	8946											
STBD1	8987	ucsc.edu;bcgsc.ca	37	4	77228038	77228038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STBD1	NM_003943	exon1	c.A116G	p.E39G	AGCAGGAGAAAGA	.	57	5	58	2	.	69	G	77228038	A	G	77228038	3	3	64	1	0	0	0	0	1	0	0	0	15273	304	11	2	118	2	STBD1	4	77228038	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		77228038	113926238	19	8947											
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	77677614	77677618	+	Frame_Shift_Del	DEL	TTCTA	TTCTA	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	TTCTA	TTCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SHROOM3	NM_020859	exon8	c.4722_4726del	p.1574_1576del	CAAACTTTCTAAA	.	132	19	127	0	.	93	-	77677618	TTCTA	-	77677614	7	5	64	1	0	1	0	1	0	0	0	0	14295	1828	64	0	4752	0	SHROOM3	4	77677614	Frame_Shift_Del	DEL	TTCTA	TCGA-DD-A1EI-01A-11D-A12Z-10	449576	77677614	113476662	20	8948											
RBM46	166863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155719372	155719372	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBM46	NM_144979	exon3	c.A561G	p.A187A	TTTTGCATTTGTG	.	219	43	192	2	.	69	G	155719372	A	G	155719372	2	3	64	1	0	0	0	0	0	0	0	1	13140	204	8	2		2	RBM46	4	155719372	Silent	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	78041758	155719372	35434904	21	8949											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96358073	96358073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LNPEP	NM_005575	exon14	c.A2446G	p.M816V	CCATCTATGCGAG	.	189	54	101	0	.	229	G	96358073	A	G	96358073	3	3	64	1	0	0	0	0	1	0	0	0	8864	449	16	2	2500	2	LNPEP	5	96358073	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		96358073	84557187	22	8950											
MYO6	4646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76596568	76596568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYO6	NM_004999	exon25	c.G2515A	p.G839S	ATTGATGGTCTGG	.	78	9	70	0	.	92	A	76596568	G	A	76596568	3	1	64	1	0	0	0	0	1	0	0	0	10081	1348	47	3	2609	3	MYO6	6	76596568	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10		76596568	94518499	23	8951											
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	109768571	109768571	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MICAL1	NM_022765	exon16	c.C2059T	p.Q687X	GGTGTTGGGATGG	.	93	13	82	0	.	154	A	109768571	G	A	109768571	4	1	64	1	0	0	0	0	0	1	0	0	9569	1357	47	3	1184	3	MICAL1	6	109768571	Nonsense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	33172003	109768571	61346496	24	8952											
GRM1	2911	broad.mit.edu;bcgsc.ca	37	6	146480536	146480536	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GRM1	NM_000838	exon3	c.A753G	p.E251E	CCAGGAAGGCCTC	.	91	6	80	0	.	1080	G	146480536	A	G	146480536	2	3	64	1	0	0	0	0	0	0	0	1	6796	69	3	2		2	GRM1	6	146480536	Silent	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	36711965	146480536	24634531	25	8953											
MLXIPL	51085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73020297	73020297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MLXIPL	NM_032954	exon6	c.A763G	p.T255A	AGAGAGTGTCTGA	.	65	18	52	1	.	91	C	73020297	T	C	73020297	3	2	64	1	0	0	0	0	1	0	0	0	9637	1696	59	2	1843	2	MLXIPL	7	73020297	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10		73020297	86118366	26	8954											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149485526	149485526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_198455	exon27	c.G3932A	p.G1311D	TGGAGGGCTGCTT	.	100	26	109	0	.	.	A	149485526	G	A	149485526	3	1	64	1	0	0	0	0	1	0	0	0	15188	1203	42	3	4034	3	SSPO	7	149485526	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	76465229	149485526	9653137	27	8955											
ZNF596	169270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	195803	195803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF596	NM_173539	exon6	c.G956A	p.C319Y	GTAAATGTTCTTA	.	149	54	116	0	.	90	A	195803	G	A	195803	3	1	64	1	0	0	0	0	1	0	0	0	18023	1377	48	3	974	3	ZNF596	8	195803	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10		195803	146168219	28	8956											
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	90937753	90937753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	OSGIN2	NM_001126111	exon6	c.T1643C	p.I548T	ATGGGATAGCTTA	.	218	126	81	0	.	68	C	90937753	T	C	90937753	3	2	64	1	0	0	0	0	1	0	0	0	11290	1406	49	2	1665	2	OSGIN2	8	90937753	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	90741950	90937753	55426269	29	8957											
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110131669	110131669	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	TRHR,nipple,malignant_melanoma,+1	TRHR	NM_003301	exon2	c.C1182A	p.S394S	GGTATCCTTTAGC	.	297	67	117	0	.	620	A	110131669	C	A	110131669	2	1	64	1	0	0	0	0	0	0	0	1	16477	668	24	3		3	TRHR	8	110131669	Silent	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	19193916	110131669	36232353	30	8958											
ST3GAL1	6482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134477129	134477129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ST3GAL1	NM_173344	exon7	c.C575G	p.P192R	CTCTCAGGGTACA	.	336	176	168	0	.	90	C	134477129	G	C	134477129	3	2	64	1	0	0	0	0	1	0	0	0	15213	1000	35	4	463	4	ST3GAL1	8	134477129	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	24345460	134477129	11886893	31	8959											
ZNF462	58499	broad.mit.edu;mdanderson.org	37	9	109688981	109688981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF462	NM_021224	exon3	c.T2788C	p.C930R	CGGTTTTGTTCAT	.	66	17	47	1	.	95	C	109688981	T	C	109688981	3	2	64	1	0	0	0	0	1	0	0	0	17923	1812	63	2	2794	2	ZNF462	9	109688981	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10		109688981	31524450	32	8960											
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14976379	14976379	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCLRE1C	NM_001033855	exon8	c.G678A	p.Q226Q	CCATACCTGGACT	.	242	75	166	0	.	228	T	14976379	C	T	14976379	2	4	64	1	0	0	0	0	0	0	0	1	4296	695	24	3		3	DCLRE1C	10	14976379	Silent	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10		14976379	120558368	33	8961											
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64148204	64148204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF365	NM_014951	exon3	c.G793T	p.V265F	AAGGAGGTTCAAG	.	160	23	125	0	.	92	T	64148204	G	T	64148204	3	4	64	1	0	0	0	0	1	0	0	0	17866	1261	44	3	799	3	ZNF365	10	64148204	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	49171825	64148204	71386543	34	8962											
MRPS16	51021	broad.mit.edu;bcgsc.ca	37	10	75010748	75010748	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MRPS16	NM_016065	exon3	c.T276C	p.G92G	AGCAAGACCTAAA	.	155	8	89	0	.	90	G	75010748	A	G	75010748	2	3	64	1	0	0	0	0	0	0	0	1	9826	289	10	2		2	MRPS16	10	75010748	Silent	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	10862544	75010748	60523999	35	8963											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6662505	6662505	+	Missense_Mutation	SNP	G	G	A	rs200060711		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCHS1	NM_003737	exon2	c.C340T	p.R114C	GGTAGCGGTCCCG	.	51	5	43	0	G|0.999;A|0.000	73	A	6662505	G	A	6662505	3	1	64	1	0	0	0	0	1	0	0	0	4287	1116	39	1	9636	1	DCHS1	11	6662505	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10		6662505	128344011	36	8964											
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58207461	58207461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	OR5B12	NM_001004733	exon1	c.C164A	p.T55N	ATGGGGGTGTGGA	.	178	47	102	0	.	68	T	58207461	G	T	58207461	3	4	64	1	0	0	0	0	1	0	0	0	11148	1261	44	3	784	3	OR5B12	11	58207461	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	51544956	58207461	76799055	37	8965											
ZP1	22917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60641219	60641219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZP1	NM_207341	exon9	c.T1543G	p.S515A	CTGGACTCAGGCT	.	50	12	37	0	.	90	G	60641219	T	G	60641219	3	3	64	1	0	0	0	0	1	0	0	0	18212	1551	54	5	1577	5	ZP1	11	60641219	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	2433758	60641219	74365297	38	8966											
ASRGL1	80150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62159568	62159568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASRGL1	NM_001083926	exon7	c.G739A	p.A247T	GAAGAGGCTGCGG	.	142	28	88	0	.	90	A	62159568	G	A	62159568	3	1	64	1	0	0	0	0	1	0	0	0	1060	1203	42	3	761	3	ASRGL1	11	62159568	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	1518349	62159568	72846948	39	8967											
RASGRP2	10235	ucsc.edu;bcgsc.ca	37	11	64496440	64496440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RASGRP2	NM_001098671	exon15	c.A1666G	p.S556G	CCAGGCTCACACT	.	46	4	36	1	.	227	C	64496440	T	C	64496440	3	2	64	1	0	0	0	0	1	0	0	0	13075	1551	54	2	171	2	RASGRP2	11	64496440	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	2336872	64496440	70510076	40	8968											
UCP3	7352	ucsc.edu;bcgsc.ca	37	11	73714875	73714875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UCP3	NM_003356	exon6	c.A821G	p.K274R	CACCCCTTGTAGA	.	41	4	35	0	.	91	C	73714875	T	C	73714875	3	2	64	1	0	0	0	0	1	0	0	0	16929	1609	56	2	129	2	UCP3	11	73714875	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	9218435	73714875	61291641	41	8969											
SERPINH1	871	broad.mit.edu;bcgsc.ca	37	11	75279857	75279857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SERPINH1	NM_001207014	exon4	c.T704C	p.M235T	GTGTCATGATGAT	.	99	7	77	0	.	228	C	75279857	T	C	75279857	3	2	64	1	0	0	0	0	1	0	0	0	14117	1464	51	2	710	2	SERPINH1	11	75279857	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	1564982	75279857	59726659	42	8970											
GPR162	27239	broad.mit.edu;bcgsc.ca	37	12	6934836	6934836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GPR162	NM_019858	exon3	c.A1055G	p.D352G	GAGATGACGGTCA	.	150	6	109	0	.	92	G	6934836	A	G	6934836	3	3	64	1	0	0	0	0	1	0	0	0	6666	275	10	2	1080	2	GPR162	12	6934836	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		6934836	126917059	43	8971											
RBP5	83758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7281340	7281340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBP5	NM_031491	exon1	c.T32A	p.F11Y	GAGACAAAGCGGT	.	296	73	223	0	.	91	T	7281340	A	T	7281340	3	4	64	1	0	0	0	0	1	0	0	0	13159	14	1	4	391	4	RBP5	12	7281340	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	346504	7281340	126570555	44	8972											
KCNJ8	3764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21926286	21926286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KCNJ8	NM_004982	exon2	c.A265G	p.I89V	ACATGATAGCGAA	.	126	15	75	0	.	90	C	21926286	T	C	21926286	3	2	64	1	0	0	0	0	1	0	0	0	8056	1406	49	2	1017	2	KCNJ8	12	21926286	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	14644946	21926286	111925609	45	8973											
TMEM106C	79022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48359720	48359720	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TMEM106C	NM_001143843	exon4	c.C351T	p.G117G	TGACGGCATCAAA	.	740	47	453	0	.	90	T	48359720	C	T	48359720	2	4	64	1	0	0	0	0	0	0	0	1	16019	697	25	3		3	TMEM106C	12	48359720	Silent	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	26433434	48359720	85492175	46	8974											
NPFF	8620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53900573	53900573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NPFF	NM_003717	exon3	c.T329C	p.F110S	TTCCCAAAGCGTT	.	68	17	54	0	.	90	G	53900573	A	G	53900573	3	3	64	1	0	0	0	0	1	0	0	0	10576	14	1	2	16	2	NPFF	12	53900573	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	5540853	53900573	79951322	47	8975											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123825580	123825580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SBNO1	NM_001167856	exon4	c.A606C	p.R202S	CCACATTCTAGCT	.	237	66	145	0	.	292	G	123825580	T	G	123825580	3	3	64	1	0	0	0	0	1	0	0	0	13862	1780	62	5	3687	5	SBNO1	12	123825580	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	69925007	123825580	10026315	48	8976											
ATP7B	540	broad.mit.edu;bcgsc.ca	37	13	52511519	52511519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ATP7B	NM_000053	exon19	c.T3914C	p.L1305P	ACATCCAGCAAAT	.	73	5	58	0	.	92	G	52511519	A	G	52511519	3	3	64	1	0	0	0	0	1	0	0	0	1191	188	7	2	495	2	ATP7B	13	52511519	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		52511519	62658359	49	8977											
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96875279	96875279	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AK7	NM_152327	exon4	c.498+1G>A	.	GACCCCGTAAGTA	.	61	8	77	0	.	228	A	96875279	G	A	96875279	5	1	64	1	0	0	0	0	0	0	1	0	444	1159	40	1	513	1	AK7	14	96875279	Splice_Site	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10		96875279	10474261	50	8978											
TRPM7	54822	bcgsc.ca;mdanderson.org	37	15	50897161	50897161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TRPM7	NM_017672	exon21	c.A2890C	p.I964L	AGTAAATTAATCT	.	196	26	151	1	.	392	G	50897161	T	G	50897161	3	3	64	1	0	0	0	0	1	0	0	0	16588	1493	52	5	2783	5	TRPM7	15	50897161	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10		50897161	51634231	51	8979											
CHTF18	63922	broad.mit.edu;mdanderson.org	37	16	847042	847042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CHTF18	NM_022092	exon20	c.C2683T	p.H895Y	CGCAACCATGAGC	.	30	6	48	0	.	227	T	847042	C	T	847042	3	4	64	1	0	0	0	0	1	0	0	0	3414	594	21	3	2761	3	CHTF18	16	847042	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10		847042	89507711	52	8980											
IFT140	9742	ucsc.edu;bcgsc.ca	37	16	1612054	1612054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	IFT140	NM_014714	exon18	c.T2131C	p.F711L	GGGGGAAGCTCTC	.	42	4	49	1	.	95	G	1612054	A	G	1612054	3	3	64	1	0	0	0	0	1	0	0	0	7556	72	3	2	2313	2	IFT140	16	1612054	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	765012	1612054	88742699	53	8981											
GTF3C1	2975	ucsc.edu;bcgsc.ca	37	16	27487845	27487845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GTF3C1	NM_001520	exon29	c.T4280C	p.L1427P	AGCACCAGAAAGT	.	34	4	31	0	.	94	G	27487845	A	G	27487845	3	3	64	1	0	0	0	0	1	0	0	0	6872	188	7	2	2085	2	GTF3C1	16	27487845	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	25875791	27487845	62866908	54	8982											
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89857938	89857938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FANCA	NM_000135	exon14	c.T1232C	p.V411A	CGCGCCACCCAGT	.	35	4	36	0	.	1130	G	89857938	A	G	89857938	3	3	64	1	0	0	0	0	1	0	0	0	5662	159	6	2	3255	2	FANCA	16	89857938	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	62370093	89857938	496815	55	8983											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578419	7578419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G511T	p.E171X	CAACCTCCGTCAT	.	64	23	88	0	.	70225	A	7578419	C	A	7578419	4	1	64	1	0	0	0	0	0	1	0	0	16378	864	30	3	787	3	TP53	17	7578419	Nonsense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10		7578419	73616791	56	8984											
NOS2	4843	ucsc.edu;bcgsc.ca	37	17	26106023	26106023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NOS2	NM_000625	exon10	c.T1064C	p.M355T	AGCAGCATGTTGG	.	43	4	31	0	.	156	G	26106023	A	G	26106023	3	3	64	1	0	0	0	0	1	0	0	0	10543	217	8	2	2469	2	NOS2	17	26106023	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	18527604	26106023	55089187	57	8985											
GSDMB	55876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38068752	38068752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GSDMB	NM_001165958	exon4	c.236-2A>G	.	TTGACCTGGAAAG	.	183	48	147	0	.	153	C	38068752	T	C	38068752	5	2	64	1	0	0	0	0	0	0	1	0	6817	1594	55	2	1052	2	GSDMB	17	38068752	Splice_Site	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	11962729	38068752	43126458	58	8986											
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41932594	41932594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD300LG	NM_145273	exon5	c.C739T	p.R247C	ATGGTCCGCATAC	.	116	25	60	0	.	90	T	41932594	C	T	41932594	3	4	64	1	0	0	0	0	1	0	0	0	3002	652	23	1	757	1	CD300LG	17	41932594	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	3863842	41932594	39262616	59	8987											
TBX2	6909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59479112	59479112	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TBX2	NM_005994	exon2	c.A463T	p.M155L	CTGCTGATGGACA	.	70	9	74	1	.	226	T	59479112	A	T	59479112	3	4	64	1	0	0	0	0	1	0	0	0	15652	333	12	4	469	4	TBX2	17	59479112	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	17546518	59479112	21716098	60	8988											
ABCA6	23460	hgsc.bcm.edu;bcgsc.ca	37	17	67110945	67110945	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCA6	NM_080284	exon13	c.1740delT	p.F580fs	TTTAGCAAACAGG	.	286	81	194	0	.	159	-	67110945	A	-	67110945	7	5	64	1	0	1	0	1	0	0	0	0	36	127	5	0	3221	0	ABCA6	17	67110945	Frame_Shift_Del	DEL	A	TCGA-DD-A1EI-01A-11D-A12Z-10	7631833	67110945	14084265	61	8989											
CARD14	79092	broad.mit.edu;bcgsc.ca	37	17	78156589	78156589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CARD14	NM_024110	exon3	c.G349T	p.G117C	TTTAGCGGTGAGA	.	161	7	92	0	.	231	T	78156589	G	T	78156589	3	4	64	1	0	0	0	0	1	0	0	0	2646	1130	39	1	355	1	CARD14	17	78156589	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	11045644	78156589	3038621	62	8990											
ANKRD12	23253	broad.mit.edu;bcgsc.ca	37	18	9258431	9258431	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANKRD12	NM_015208	exon9	c.C5166A	p.A1722A	AAATGCCGAAGAT	.	107	5	67	0	.	92	A	9258431	C	A	9258431	2	1	64	1	0	0	0	0	0	0	0	1	640	639	23	1		1	ANKRD12	18	9258431	Silent	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10		9258431	68818817	63	8991											
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60242702	60242702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZCCHC2	NM_017742	exon13	c.A3388C	p.N1130H	AATGGGAATGTCT	.	197	55	125	0	.	432	C	60242702	A	C	60242702	3	2	64	1	0	0	0	0	1	0	0	0	17584	246	9	5	3438	5	ZCCHC2	18	60242702	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	50984271	60242702	17834546	64	8992											
ANKRD24	170961	ucsc.edu;bcgsc.ca	37	19	4216326	4216326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANKRD24	NM_133475	exon17	c.A1316G	p.E439G	CCCAGGAACACCT	.	40	4	49	0	.	68	G	4216326	A	G	4216326	3	3	64	1	0	0	0	0	1	0	0	0	653	246	9	2	1378	2	ANKRD24	19	4216326	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		4216326	54912657	65	8993											
ANKLE1	126549	ucsc.edu;bcgsc.ca	37	19	17396254	17396254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_152363	exon7	c.T1391C	p.L464P	AGGACCTGCCAGC	.	42	4	46	0	.	.	C	17396254	T	C	17396254	3	2	64	1	0	0	0	0	1	0	0	0	632	1580	55	2	1417	2	ANKLE1	19	17396254	Missense_Mutation	SNP	T	TCGA-DD-A1EI-01A-11D-A12Z-10	13179928	17396254	41732729	66	8994											
SARS2	54938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39408640	39408640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SARS2	NM_001145901	exon12	c.G977T	p.C326F	CTGGAGCAAACCA	.	190	60	140	0	.	93	A	39408640	C	A	39408640	3	1	64	1	0	0	0	0	1	0	0	0	13845	710	25	3	609	3	SARS2	19	39408640	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	22012386	39408640	19720343	67	8995											
CD177	57126	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	43866283	43866283	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD177	.	.	.	.	GGCCCAACCTTCC	.	196	19	182	0	.	22	G	43866283	A	G	43866283	1	3	64	0	1	0	0	0	0	0	0	0	2971	40	2	2		2	CD177	19	43866283	RNA	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	4457643	43866283	15262700	68	8996											
STRN4	29888	ucsc.edu;bcgsc.ca	37	19	47225275	47225275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STRN4	NM_001039877	exon16	c.T2081C	p.V694A	GGGTCCACGGCTA	.	30	4	28	0	.	90	G	47225275	A	G	47225275	3	3	64	1	0	0	0	0	1	0	0	0	15330	159	6	2	209	2	STRN4	19	47225275	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	3358992	47225275	11903708	69	8997											
FLT3LG	2323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49979723	49979723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FLT3LG	NM_001204503	exon4	c.G242A	p.R81H	CACAGCGCTGGAT	.	68	16	48	0	.	115	A	49979723	G	A	49979723	3	1	64	1	0	0	0	0	1	0	0	0	5943	1087	38	1	256	1	FLT3LG	19	49979723	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	2754448	49979723	9149260	70	8998											
PAX1	5075	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	21687580	21687580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PAX1	NM_006192	exon2	c.G791A	p.G264D	CCACGGGCGCCAA	.	44	5	47	0	.	227	A	21687580	G	A	21687580	3	1	64	1	0	0	0	0	1	0	0	0	11478	1203	42	3	797	3	PAX1	20	21687580	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10		21687580	41337940	71	8999											
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43851219	43851219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEMG2	NM_003008	exon2	c.A946T	p.I316F	ATTTCTATCCAAA	.	257	64	172	0	.	91	T	43851219	A	T	43851219	3	4	64	1	0	0	0	0	1	0	0	0	14045	449	16	4	952	4	SEMG2	20	43851219	Missense_Mutation	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10	22163639	43851219	19174301	72	9000											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18028982	18028982	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CECR2	.	.	.	.	ATCTGCATTTCCA	.	91	22	66	0	.	70	G	18028982	A	G	18028982	2	3	64	1	0	0	0	0	0	0	0	1	3206	204	8	2		2	CECR2	22	18028982	Silent	SNP	A	TCGA-DD-A1EI-01A-11D-A12Z-10		18028982	33275584	73	9001											
PHF21B	112885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45289355	45289355	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PHF21B	NM_138415	exon7	c.C942T	p.S314S	GAGGCCGCTGTAG	.	195	36	139	2	.	93	A	45289355	G	A	45289355	2	1	64	1	0	0	0	0	0	0	0	1	11834	1078	38	1		1	PHF21B	22	45289355	Silent	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10	27260373	45289355	6015211	74	9002											
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140993326	140993326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAGEC1	NM_005462	exon4	c.G136C	p.D46H	AGCGACGACACCC	.	59	24	41	0	.	133	C	140993326	G	C	140993326	3	2	64	1	0	0	0	0	1	0	0	0	9180	1058	37	4	142	4	MAGEC1	23	140993326	Missense_Mutation	SNP	G	TCGA-DD-A1EI-01A-11D-A12Z-10		140993326	14277234	75	9003											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144904543	144904543	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLITRK2	NM_001144005	exon5	c.C600A	p.G200G	TGCTGGCGTCCTT	.	93	37	78	0	.	136	A	144904543	C	A	144904543	2	1	64	1	0	0	0	0	0	0	0	1	14743	755	27	1		1	SLITRK2	23	144904543	Silent	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10	3911217	144904543	10366017	76	9004											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4968285	4968285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032972	exon2	c.C2666A	p.P889Q	CTACCCCAAACCC	.	484	120	258	0	.	.	A	4968285	C	A	4968285	3	1	64	1	0	0	0	0	1	0	0	0	11509	594	21	3	2708	3	PCDH11Y	24	4968285	Missense_Mutation	SNP	C	TCGA-DD-A1EI-01A-11D-A12Z-10		4968285	54405281	77	9005											
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27739169	27739169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	WASF2	NM_006990	exon7	c.G721A	p.V241M	CATCCACGTTTTC	.	228	88	49	0	.	228	T	27739169	C	T	27739169	3	4	65	1	0	0	0	0	1	0	0	0	17250	536	19	1	787	1	WASF2	1	27739169	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10		27739169	221511452	1	9006											
EBNA1BP2	10969	ucsc.edu;bcgsc.ca	37	1	43637633	43637633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EBNA1BP2	NM_001159936	exon3	c.A239G	p.D80G	AACGCATCCTGCA	.	38	4	201	0	.	90	C	43637633	T	C	43637633	3	2	65	1	0	0	0	0	1	0	0	0	4885	1435	50	2	878	2	EBNA1BP2	1	43637633	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	15898464	43637633	205612988	2	9007											
PTPRF	5792	ucsc.edu;bcgsc.ca	37	1	44069357	44069357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRF	NM_002840	exon16	c.A2534G	p.E845G	CCAAGGAACTGCC	.	46	4	178	0	.	232	G	44069357	A	G	44069357	3	3	65	1	0	0	0	0	1	0	0	0	12801	246	9	2	2588	2	PTPRF	1	44069357	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	431724	44069357	205181264	3	9008											
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66723358	66723358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PDE4B	NM_001037341	exon5	c.T505G	p.F169V	ACTCCTTTTGCCC	.	252	164	50	0	.	92	G	66723358	T	G	66723358	3	3	65	1	0	0	0	0	1	0	0	0	11640	1841	64	5	759	5	PDE4B	1	66723358	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	22654001	66723358	182527263	4	9009											
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90487903	90487903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF326	NM_182976	exon11	c.A1400C	p.K467T	TTGTTAAGGTAAG	.	395	76	72	0	.	91	C	90487903	A	C	90487903	3	2	65	1	0	0	0	0	1	0	0	0	17843	86	3	5	1446	5	ZNF326	1	90487903	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	23764545	90487903	158762718	5	9010											
KCNH1	3756	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	211093326	211093326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCNH1	NM_172362	exon7	c.A1118G	p.E373G	CCATATTCAATGT	.	156	33	481	1	.	94	C	211093326	T	C	211093326	3	2	65	1	0	0	0	0	1	0	0	0	8031	1783	62	2	1871	2	KCNH1	1	211093326	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	120605423	211093326	38157295	6	9011											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231830097	231830097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DISC1	NM_001164541	exon2	c.C593A	p.T198N	CCCCAACCCCTCC	.	114	21	450	0	.	91	A	231830097	C	A	231830097	3	1	65	1	0	0	0	0	1	0	0	0	4538	507	18	3	599	3	DISC1	1	231830097	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	20736771	231830097	17420524	7	9012											
CGREF1	10669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27325451	27325451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CGREF1	NM_001166239	exon3	c.C89A	p.S30Y	ACTTCAGAGTCTG	.	48	10	140	0	.	91	T	27325451	G	T	27325451	3	4	65	1	0	0	0	0	1	0	0	0	3305	942	33	3	1075	3	CGREF1	2	27325451	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		27325451	215873922	8	9013											
SIX2	10736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45233509	45233509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SIX2	NM_016932	exon2	c.T676A	p.S226T	TGGATGATGAGTG	.	16	12	114	0	.	91	T	45233509	A	T	45233509	3	4	65	1	0	0	0	0	1	0	0	0	14347	333	12	4	203	4	SIX2	2	45233509	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	17908058	45233509	197965864	9	9014											
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48809395	48809395	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	STON1	NM_001198595	exon3	c.G1623A	p.V541V	ATACGTGGAACTT	.	285	43	56	0	.	91	A	48809395	G	A	48809395	2	1	65	1	0	0	0	0	0	0	0	1	15315	1335	47	3		3	STON1	2	48809395	Silent	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	3575886	48809395	194389978	10	9015											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179559565	179559565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TTN	NM_001267550	exon116	c.G31339C	p.V10447L	TGGTGACTTGAAC	.	339	126	53	0	.	636	G	179559565	C	G	179559565	3	3	65	1	0	0	0	0	1	0	0	0	16732	565	20	4	73178	4	TTN	2	179559565	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	130750170	179559565	63639808	11	9016											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	175	89	15	0	.	24361	T	41268766	A	T	41268766	3	4	65	1	0	0	0	0	1	0	0	0	4016	14	1	4	1026	4	CTNNB1	3	41268766	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10		41268766	156753664	12	9017											
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53707151	53707151	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CACNA1D	NM_001128840	exon8	c.C1218T	p.S406S	ATTGAGCGGGTAA	.	978	485	135	0	.	100	T	53707151	C	T	53707151	2	4	65	1	0	0	0	0	0	0	0	1	2541	767	27	1		1	CACNA1D	3	53707151	Silent	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	12438385	53707151	144315279	13	9018											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	86114753	86114753	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CADM2	NM_001167674	exon9	c.1064-2A>G	.	TTTTCCAGATCCT	.	249	110	46	0	.	228	G	86114753	A	G	86114753	5	3	65	1	0	0	0	0	0	0	1	0	2567	202	7	2	1167	2	CADM2	3	86114753	Splice_Site	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	32407602	86114753	111907677	14	9019											
EPHA3	2042	broad.mit.edu;bcgsc.ca	37	3	89156983	89156983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EPHA3	NM_005233	exon1	c.G85A	p.E29K	TCCAATGAAGGTA	.	87	5	216	1	.	1500	A	89156983	G	A	89156983	3	1	65	1	0	0	0	0	1	0	0	0	5168	1291	45	3	87	3	EPHA3	3	89156983	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	3042230	89156983	108865447	15	9020											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	124165646	124165646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KALRN	NM_003947	exon21	c.C3460G	p.L1154V	TTTTACCTCTCAA	.	77	29	13	0	.	738	G	124165646	C	G	124165646	3	3	65	1	0	0	0	0	1	0	0	0	7975	681	24	4	3542	4	KALRN	3	124165646	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	35008663	124165646	73856784	16	9021											
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	125313601	125313605	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	CTCTC	CTCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OSBPL11	NM_022776	exon1	c.40_44del	p.14_15del	CCTTCGCTCTCCG	.	155	36	392	0	.	135	-	125313605	CTCTC	-	125313601	7	5	65	1	0	1	0	1	0	0	0	0	11276	797	28	0	2251	0	OSBPL11	3	125313601	Frame_Shift_Del	DEL	CTCTC	TCGA-DD-A1EJ-01A-11D-A152-10	1147955	125313601	72708829	17	9022											
RAB7A	7879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128516808	128516808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RAB7A	NM_004637	exon3	c.A76G	p.N26D	CTCATGAACCAGT	.	205	33	29	0	.	227	G	128516808	A	G	128516808	3	3	65	1	0	0	0	0	1	0	0	0	12954	246	9	2	82	2	RAB7A	3	128516808	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	3203207	128516808	69505622	18	9023											
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148559613	148559613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CPB1	NM_001871	exon6	c.G478A	p.G160S	TAGGTTGGCAAAG	.	212	93	35	0	.	92	A	148559613	G	A	148559613	3	1	65	1	0	0	0	0	1	0	0	0	3796	1348	47	3	500	3	CPB1	3	148559613	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	20042805	148559613	49462817	19	9024											
TP63	8626	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	189349323	189349323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TP63	NM_001114979	exon1	c.C19T	p.R7W	ACTTCACGGTGTG	.	112	9	17	0	.	421	T	189349323	C	T	189349323	3	4	65	1	0	0	0	0	1	0	0	0	16389	527	19	1	21	1	TP63	3	189349323	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	40789710	189349323	8673107	20	9025											
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193061790	193061790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ATP13A5	NM_198505	exon9	c.C869T	p.P290L	TTTCCTGGAAGAA	.	209	96	41	0	.	144	A	193061790	G	A	193061790	3	1	65	1	0	0	0	0	1	0	0	0	1127	1348	47	3	2873	3	ATP13A5	3	193061790	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	3712467	193061790	4960640	21	9026											
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6335429	6335429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPP2R2C	NM_181876	exon7	c.C820T	p.R274C	ATGAGCGGTTACT	.	103	26	434	1	.	1084	A	6335429	G	A	6335429	3	1	65	1	0	0	0	0	1	0	0	0	12386	1116	39	1	535	1	PPP2R2C	4	6335429	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		6335429	184818847	22	9027											
FHDC1	85462	ucsc.edu;bcgsc.ca	37	4	153897270	153897270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FHDC1	NM_033393	exon11	c.A2827G	p.N943D	CGCCAGAACTCCG	.	44	4	244	0	.	136	G	153897270	A	G	153897270	3	3	65	1	0	0	0	0	1	0	0	0	5876	246	9	2	2869	2	FHDC1	4	153897270	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	147561841	153897270	37257006	23	9028											
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	15937055	15937055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FBXL7	NM_012304	exon4	c.1236delC	p.C412fs	CAAATGCCCTTTG	.	69	17	329	0	.	228	-	15937055	C	-	15937055	7	5	65	1	0	1	0	1	0	0	0	0	5724	747	26	0	1250	0	FBXL7	5	15937055	Frame_Shift_Del	DEL	C	TCGA-DD-A1EJ-01A-11D-A152-10		15937055	164978205	24	9029											
PRELID1	27166	bcgsc.ca;mdanderson.org	37	5	176731012	176731012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRELID1	NM_013237	exon1	c.G26T	p.S9I	GCCAGAGCGTGCT	.	9	3	54	0	.	90	T	176731012	G	T	176731012	3	4	65	1	0	0	0	0	1	0	0	0	12471	971	34	3	28	3	PRELID1	5	176731012	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	160793957	176731012	4184248	25	9030											
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33166198	33166198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRB	NM_021976	exon3	c.527delC	p.P176fs	TCTTCAGGGGGGC	.	57	32	180	0	.	189	-	33166198	G	-	33166198	7	5	65	1	0	1	0	1	0	0	0	0	13764	1000	35	0	1106	0	RXRB	6	33166198	Frame_Shift_Del	DEL	G	TCGA-DD-A1EJ-01A-11D-A152-10		33166198	137948869	26	9031											
SCUBE3	222663	ucsc.edu;bcgsc.ca	37	6	35209660	35209660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SCUBE3	NM_152753	exon12	c.A1390G	p.N464D	AATGGGAACAGCA	.	42	4	106	0	.	91	G	35209660	A	G	35209660	3	3	65	1	0	0	0	0	1	0	0	0	13946	246	9	2	1436	2	SCUBE3	6	35209660	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	2043462	35209660	135905407	27	9032											
KCTD20	222658	hgsc.bcm.edu;mdanderson.org	37	6	36447368	36447368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCTD20	NM_173562	exon5	c.G538T	p.D180Y	TTACAGGATTATT	.	41	11	11	0	.	92	T	36447368	G	T	36447368	3	4	65	1	0	0	0	0	1	0	0	0	8108	1188	41	3	552	3	KCTD20	6	36447368	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	1237708	36447368	134667699	28	9033											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	129637033	129637033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMA2	NM_000426	exon26	c.G3862A	p.V1288I	ATTATCGTCAGGC	.	52	11	12	0	.	162	A	129637033	G	A	129637033	3	1	65	1	0	0	0	0	1	0	0	0	8606	1145	40	1	3964	1	LAMA2	6	129637033	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	93189665	129637033	41478034	29	9034											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48318518	48318518	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCA13	NM_152701	exon18	c.T7727A	p.L2576X	CTACTTTAAAAAA	.	167	17	18	0	.	521	A	48318518	T	A	48318518	4	1	65	1	0	0	0	0	0	1	0	0	31	1764	61	4	7626	4	ABCA13	7	48318518	Nonsense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10		48318518	110820145	30	9035											
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73020290	73020290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MLXIPL	NM_032954	exon6	c.T770C	p.F257S	ATGGTGAAGAGAG	.	54	28	220	1	.	91	G	73020290	A	G	73020290	3	3	65	1	0	0	0	0	1	0	0	0	9637	246	9	2	1836	2	MLXIPL	7	73020290	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	24701772	73020290	86118373	31	9036											
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83021890	83021890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA3E	NM_012431	exon14	c.A1648G	p.T550A	TGCCTGTTGGGTA	.	153	76	44	0	.	93	C	83021890	T	C	83021890	3	2	65	1	0	0	0	0	1	0	0	0	14028	1725	60	2	695	2	SEMA3E	7	83021890	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	10001600	83021890	76116773	32	9037											
SGCE	8910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	94232701	94232701	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGCE	NM_001099401	exon6	c.A726T	p.P242P	ATTCTGTGGATTT	.	292	107	47	0	.	91	A	94232701	T	A	94232701	2	1	65	1	0	0	0	0	0	0	0	1	14202	1683	59	4		4	SGCE	7	94232701	Silent	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	11210811	94232701	64905962	33	9038											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121684588	121684588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRZ1	NM_002851	exon23	c.C6050T	p.P2017L	CTGGACCAGCAGG	.	138	24	27	0	.	699	T	121684588	C	T	121684588	3	4	65	1	0	0	0	0	1	0	0	0	12814	594	21	3	6140	3	PTPRZ1	7	121684588	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	27451887	121684588	37454075	34	9039											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143039472	143039472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CLCN1	NM_000083	exon16	c.A1804G	p.T602A	AAATATACCATCT	.	158	57	20	0	.	156	G	143039472	A	G	143039472	3	3	65	1	0	0	0	0	1	0	0	0	3462	391	14	2	1866	2	CLCN1	7	143039472	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	21354884	143039472	16099191	35	9040											
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67067941	67067941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TRIM55	NM_033058	exon10	c.A1608C	p.L536F	TACTTTAATGGGT	.	253	120	59	0	.	230	C	67067941	A	C	67067941	3	2	65	1	0	0	0	0	1	0	0	0	16526	359	13	5	1646	5	TRIM55	8	67067941	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10		67067941	79296081	36	9041											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	TGAGCACAAAAAA	.	120	44	30	0	.	1132	A	113347574	-	A	113347573	7	5	65	1	0	1	1	0	0	0	0	0	3946	478	17	0	4081	0	CSMD3	8	113347573	Frame_Shift_Ins	INS	-	TCGA-DD-A1EJ-01A-11D-A152-10	46279632	113347573	33016449	37	9042											
KLF9	687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73027906	73027906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KLF9	NM_001206	exon1	c.C374G	p.S125C	AGGAGGGAGAGCG	.	149	42	558	0	.	90	C	73027906	G	C	73027906	3	2	65	1	0	0	0	0	1	0	0	0	8353	1174	41	4	368	4	KLF9	9	73027906	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		73027906	68185525	38	9043											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90318036	90318036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DAPK1	NM_004938	exon25	c.G2964A	p.L988L	GTCGCTGCAGCAG	.	55	17	302	0	.	359	A	90318036	G	A	90318036	2	1	65	1	0	0	0	0	0	0	0	1	4235	1306	46	3		3	DAPK1	9	90318036	Silent	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	17290130	90318036	50895395	39	9044											
RXRA	6256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137328351	137328351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRA	NM_002957	exon10	c.C1280T	p.S427F	TGCGCTCCATCGG	.	78	23	284	0	.	188	T	137328351	C	T	137328351	3	4	65	1	0	0	0	0	1	0	0	0	13763	855	30	3	1318	3	RXRA	9	137328351	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	47010315	137328351	3885080	40	9045											
TACR2	6865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71175920	71175920	+	Missense_Mutation	SNP	C	C	T	rs151093941		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TACR2	NM_001057	exon1	c.G160A	p.V54I	AGATGACGATGGC	.	99	16	431	1	C|1.000;T|0.000	522	T	71175920	C	T	71175920	3	4	65	1	0	0	0	0	1	0	0	0	15503	536	19	1	1056	1	TACR2	10	71175920	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10		71175920	64358827	41	9046											
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92508894	92508894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HTR7	NM_019860	exon2	c.G997A	p.V333I	CCCCGACGATGAT	.	156	43	252	0	.	91	T	92508894	C	T	92508894	3	4	65	1	0	0	0	0	1	0	0	0	7452	536	19	1	458	1	HTR7	10	92508894	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	21332974	92508894	43025853	42	9047											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1077628	1077628	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MUC2	NM_002457	exon3	c.G378A	p.L126L	CGGGCTGCTCATT	.	82	22	382	1	.	90	A	1077628	G	A	1077628	2	1	65	1	0	0	0	0	0	0	0	1	9975	1306	46	3		3	MUC2	11	1077628	Silent	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		1077628	133928888	43	9048											
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5474986	5474986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	OR51I2,NS,carcinoma,-1	OR51I2	NM_001004754	exon1	c.C268T	p.R90C	AATGCCCGCAACA	.	123	28	97	0	.	72	T	5474986	C	T	5474986	3	4	65	1	0	0	0	0	1	0	0	0	11101	652	23	1	270	1	OR51I2	11	5474986	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	4397358	5474986	129531530	44	9049											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19955620	19955620	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NAV2	NM_001244963	exon8	c.C1899G	p.S633S	ACACTCCAGTTCC	.	50	30	316	0	.	96	G	19955620	C	G	19955620	2	3	65	1	0	0	0	0	0	0	0	1	10184	581	21	4		4	NAV2	11	19955620	Silent	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	14480634	19955620	115050896	45	9050											
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76969478	76969478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GDPD4	NM_182833	exon10	c.G817A	p.D273N	GGAAATCCCAGTT	.	164	93	33	0	.	69	T	76969478	C	T	76969478	3	4	65	1	0	0	0	0	1	0	0	0	6326	855	30	3	773	3	GDPD4	11	76969478	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	57013858	76969478	58037038	46	9051											
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	77672039	77672039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	INTS4	NM_033547	exon5	c.A617T	p.D206V	TCTTGGTCACTGA	.	195	23	53	0	.	92	A	77672039	T	A	77672039	3	1	65	1	0	0	0	0	1	0	0	0	7780	1667	58	4	2350	4	INTS4	11	77672039	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	702561	77672039	57334477	47	9052											
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111746748	111746748	+	Missense_Mutation	SNP	G	G	A	rs189903941		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FDXACB1	NM_138378	exon5	c.C773T	p.P258L	TTTAGCGGGAAAA	.	110	35	26	0	G|0.999;A|0.001	22	A	111746748	G	A	111746748	3	1	65	1	0	0	0	0	1	0	0	0	5806	1116	39	1	1105	1	FDXACB1	11	111746748	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	34074709	111746748	23259768	48	9053											
NFRKB	4798	broad.mit.edu;bcgsc.ca	37	11	129762615	129762615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NFRKB	NM_006165	exon1	c.G169A	p.E57K	CATCCTCCAGAAG	.	81	5	138	0	.	93	T	129762615	C	T	129762615	3	4	65	1	0	0	0	0	1	0	0	0	10384	864	30	3	3905	3	NFRKB	11	129762615	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	18015867	129762615	5243901	49	9054											
NEUROD4	58158	ucsc.edu;mdanderson.org	37	12	55420793	55420793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NEUROD4	NM_021191	exon2	c.T570C	p.S190S	TAAATCTCCTATT	.	43	8	17	0	.	94	C	55420793	T	C	55420793	2	2	65	1	0	0	0	0	0	0	0	1	10350	1538	54	2		2	NEUROD4	12	55420793	Silent	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10		55420793	78431102	50	9055											
TBX3	6926	ucsc.edu;bcgsc.ca	37	12	115112603	115112603	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TBX3	NM_016569	exon7	c.C1137T	p.A379A	GCTCTCGGCCTCG	.	41	4	194	0	.	93	A	115112603	G	A	115112603	2	1	65	1	0	0	0	0	0	0	0	1	15656	1103	39	1		1	TBX3	12	115112603	Silent	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	59691810	115112603	18739292	51	9056											
SLITRK1	114798	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454187	84454187	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SLITRK1	NM_052910	exon1	c.C1456T	p.L486L	CAGGCAGGGACCT	.	122	26	211	2	.	94	A	84454187	G	A	84454187	2	1	65	1	0	0	0	0	0	0	0	1	14742	991	35	3		3	SLITRK1	13	84454187	Silent	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		84454187	30715691	52	9057											
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96599294	96599294	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	UGGT2	NM_020121	exon15	c.A1674G	p.V558V	CACGTGTACTATA	.	261	105	39	0	.	92	C	96599294	T	C	96599294	2	2	65	1	0	0	0	0	0	0	0	1	16939	1625	57	2		2	UGGT2	13	96599294	Silent	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	12145107	96599294	18570584	53	9058											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48063289	48063289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA6D	NM_153618	exon19	c.C2529A	p.N843K	CTCAAACTCCAAT	.	111	36	23	0	.	138	A	48063289	C	A	48063289	3	1	65	1	0	0	0	0	1	0	0	0	14042	564	20	3	2642	3	SEMA6D	15	48063289	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10		48063289	54468103	54	9059											
GNB5	10681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52476791	52476791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GNB5	NM_016194	exon2	c.A83T	p.K28M	GACTTCTTGAAAA	.	77	37	25	0	.	227	A	52476791	T	A	52476791	3	1	65	1	0	0	0	0	1	0	0	0	6521	1609	56	4	1152	4	GNB5	15	52476791	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	4413502	52476791	50054601	55	9060											
IGFALS	3483	ucsc.edu;bcgsc.ca	37	16	1841215	1841215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	IGFALS	NM_001146006	exon2	c.C1318A	p.R440S	GCGGGCGGATGCG	.	33	4	178	0	.	90	T	1841215	G	T	1841215	3	4	65	1	0	0	0	0	1	0	0	0	7577	1116	39	1	617	1	IGFALS	16	1841215	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		1841215	88513538	56	9061											
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	46991020	46991020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DNAJA2	NM_005880	exon9	c.G1160T	p.R387M	TCACGCCTCTGAC	.	143	66	18	0	.	226	A	46991020	C	A	46991020	3	1	65	1	0	0	0	0	1	0	0	0	4612	681	24	3	82	3	DNAJA2	16	46991020	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	45149805	46991020	43363733	57	9062											
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32956067	32956067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TMEM132E	NM_207313	exon5	c.C912A	p.D304E	GCTGGACTTTGAA	.	138	27	466	0	.	68	A	32956067	C	A	32956067	3	1	65	1	0	0	0	0	1	0	0	0	16045	564	20	3	930	3	TMEM132E	17	32956067	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10		32956067	48239143	58	9063											
APOH	350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	64222231	64222231	+	Missense_Mutation	SNP	G	G	A	rs55645281		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	APOH	NM_000042	exon3	c.C253T	p.P85S	CAAAAGGACATAC	.	111	76	33	0	.	90	A	64222231	G	A	64222231	3	1	65	1	0	0	0	0	1	0	0	0	804	1174	41	3	808	3	APOH	17	64222231	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10	31266164	64222231	16972979	59	9064											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65214794	65214794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HELZ	NM_014877	exon4	c.G127T	p.D43Y	TGAAGTCTGCCAT	.	169	33	31	0	.	92	A	65214794	C	A	65214794	3	1	65	1	0	0	0	0	1	0	0	0	7049	913	32	3	5821	3	HELZ	17	65214794	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	992563	65214794	15980416	60	9065											
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56998712	56998712	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LMAN1	NM_005570	exon12	c.G1434T	p.T478T	GTGGACCGTAGAC	.	185	21	40	0	.	91	A	56998712	C	A	56998712	2	1	65	1	0	0	0	0	0	0	0	1	8836	639	23	1		1	LMAN1	18	56998712	Silent	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10		56998712	21078536	61	9066											
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992584	67992585	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.680_681insC	p.L227fs	TGCCTTTAGATGA	.	110	33	185	0	.	721	C	67992585	-	C	67992584	7	5	65	1	0	1	1	0	0	0	0	0	14918	1764	61	0	682	0	SOCS6	18	67992584	Frame_Shift_Ins	INS	-	TCGA-DD-A1EJ-01A-11D-A152-10	10993872	67992584	10084664	62	9067	50	2									
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992586	67992606	+	In_Frame_Del	DEL	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.682_702del	p.228_234del	CCTTTAGATGAGG	.	98	28	186	0	.	721	-	67992606	GATGAGGGGATGTATCCTTTG	-	67992586	7	5	65	1	0	1	0	1	0	0	0	0	14918	942	33	0	684	0	SOCS6	18	67992586	In_Frame_Del	DEL	GATGAGGGGATGTATCCTTTG	TCGA-DD-A1EJ-01A-11D-A152-10	2	67992586	10084662	63	9068	50	2									
GRIN3B	116444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1004576	1004576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRIN3B	NM_138690	exon3	c.G1076A	p.S359N	CAGGCAGCTCCCA	.	44	12	225	0	.	90	A	1004576	G	A	1004576	3	1	65	1	0	0	0	0	1	0	0	0	6784	971	34	3	1086	3	GRIN3B	19	1004576	Missense_Mutation	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		1004576	58124407	64	9069											
SGTA	6449	ucsc.edu;bcgsc.ca	37	19	2761469	2761469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGTA	NM_003021	exon8	c.T688C	p.F230L	TCATGAAGCCAGG	.	36	4	206	0	.	91	G	2761469	A	G	2761469	3	3	65	1	0	0	0	0	1	0	0	0	14225	72	3	2	269	2	SGTA	19	2761469	Missense_Mutation	SNP	A	TCGA-DD-A1EJ-01A-11D-A152-10	1756893	2761469	56367514	65	9070											
GMIP	51291	ucsc.edu;bcgsc.ca	37	19	19744903	19744903	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GMIP	NM_016573	exon19	c.A2181G	p.A727A	GCTGGCTGCCCGC	.	27	4	160	0	.	91	C	19744903	T	C	19744903	2	2	65	1	0	0	0	0	0	0	0	1	6491	1567	55	2		2	GMIP	19	19744903	Silent	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	16983434	19744903	39384080	66	9071											
LILRB5	10990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54760149	54760149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LILRB5	NM_001081442	exon4	c.G412A	p.G138R	CATTTCCTCCTGA	.	35	10	96	1	.	92	T	54760149	C	T	54760149	3	4	65	1	0	0	0	0	1	0	0	0	8794	690	24	3	1403	3	LILRB5	19	54760149	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	35015246	54760149	4368834	67	9072											
C21orf59	56683	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33974647	33974647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C21orf59	NM_021254	exon6	c.A697G	p.I233V	TAATAATAGGCTC	.	67	21	85	1	.	90	C	33974647	T	C	33974647	3	2	65	1	0	0	0	0	1	0	0	0	2130	1406	49	2	183	2	C21orf59	21	33974647	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10		33974647	14155248	68	9073											
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	33960897	33960897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LARGE	NM_004737	exon7	c.G724A	p.D242N	CCGTGTCAAGGAC	.	119	46	13	0	.	92	T	33960897	C	T	33960897	3	4	65	1	0	0	0	0	1	0	0	0	8627	826	29	3	1586	3	LARGE	22	33960897	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10		33960897	17343669	69	9074											
CYB5R3	1727	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43024254	43024254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CYB5R3	NM_001171660	exon5	c.G466A	p.A156T	CTCCAGCGGGAAA	.	78	8	207	0	.	91	T	43024254	C	T	43024254	3	4	65	1	0	0	0	0	1	0	0	0	4128	768	27	1	558	1	CYB5R3	22	43024254	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	9063357	43024254	8280312	70	9075											
GRAMD4	23151	ucsc.edu;bcgsc.ca	37	22	47058978	47058978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRAMD4	NM_015124	exon5	c.T508C	p.F170L	AAGTGGTTCTACG	.	29	4	100	0	.	23	C	47058978	T	C	47058978	3	2	65	1	0	0	0	0	1	0	0	0	6752	1725	60	2	526	2	GRAMD4	22	47058978	Missense_Mutation	SNP	T	TCGA-DD-A1EJ-01A-11D-A152-10	4034724	47058978	4245588	71	9076											
ARSA	410	bcgsc.ca;mdanderson.org	37	22	51065802	51065802	+	Missense_Mutation	SNP	C	C	A	rs74315458	bycluster;alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ARSA	NM_001085426	exon3	c.G257T	p.R86L	CCCATCCGAACCG	.	9	3	57	0	.	92	A	51065802	C	A	51065802	3	1	65	1	0	0	0	0	1	0	0	0	987	652	23	1	1300	1	ARSA	22	51065802	Missense_Mutation	SNP	C	TCGA-DD-A1EJ-01A-11D-A152-10	4006824	51065802	238764	72	9077											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5811266	5811266	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NLGN4X	NM_181332	exon6	c.C2043T	p.V681V	CGCCCCGACGGCA	.	252	95	597	1	.	195	A	5811266	G	A	5811266	2	1	65	1	0	0	0	0	0	0	0	1	10464	1045	37	1		1	NLGN4X	23	5811266	Silent	SNP	G	TCGA-DD-A1EJ-01A-11D-A152-10		5811266	149459294	73	9078											
GJB1	2705	hgsc.bcm.edu;broad.mit.edu	37	X	70443636	70443637	+	In_Frame_Ins	INS	-	-	TCATCT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GJB1	NM_001097642	exon2	c.79_80insTCATCT	p.V27delinsVIF	CTCTCGGTCATCT	.	93	40	322	0	.	193	TCATCT	70443637	-	TCATCT	70443636	7	5	65	1	0	1	1	0	0	0	0	0	6407	1261	44	0	81	0	GJB1	23	70443636	In_Frame_Ins	INS	-	TCGA-DD-A1EJ-01A-11D-A152-10	64632370	70443636	84826924	74	9079											
SLC25A24	29957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108735196	108735196	+	Missense_Mutation	SNP	C	C	A	rs150343087	byfrequency;alternate_allele	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC25A24	NM_213651	exon1	c.G48T	p.K16N	CCCATCCTTGTTA	.	108	54	107	0	C|0.996;T|0.004	91	A	108735196	C	A	108735196	3	1	66	1	0	0	0	0	1	0	0	0	14487	680	24	3	1368	3	SLC25A24	1	108735196	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		108735196	140515425	1	9080											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110740935	110740935	+	Missense_Mutation	SNP	C	C	T	rs141622274	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC6A17	NM_001010898	exon12	c.C2053T	p.P685S	GAGGCACCTTCCC	.	120	50	127	0	C|1.000;T|0.000	92	T	110740935	C	T	110740935	3	4	66	1	0	0	0	0	1	0	0	0	14680	507	18	3	2095	3	SLC6A17	1	110740935	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	2005739	110740935	138509686	2	9081											
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152083976	152083976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TCHH	NM_007113	exon3	c.G1717T	p.E573X	GCCTCTCCTCCTG	.	347	72	242	0	.	72	A	152083976	C	A	152083976	4	1	66	1	0	0	0	0	0	1	0	0	15697	864	30	3	4118	3	TCHH	1	152083976	Nonsense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	41343041	152083976	97166645	3	9082											
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154987976	154987976	+	Silent	SNP	G	G	A	rs199671742		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZBTB7B	NM_001252406	exon4	c.G942A	p.E314E	AGAAGAGGAGCTG	.	171	43	140	0	G|0.999;A|0.001	90	A	154987976	G	A	154987976	2	1	66	1	0	0	0	0	0	0	0	1	17551	991	35	3		3	ZBTB7B	1	154987976	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	2904000	154987976	94262645	4	9083											
SELE	6401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169696929	169696929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SELE	NM_000450	exon9	c.T1419C	p.L473L	GCACTCAAGTTGA	.	312	96	261	0	.	95	G	169696929	A	G	169696929	2	3	66	1	0	0	0	0	0	0	0	1	14013	117	5	2		2	SELE	1	169696929	Silent	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	14708953	169696929	79553692	5	9084											
ANGPTL1	9068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178820448	178820448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ANGPTL1	NM_004673	exon6	c.A1292G	p.N431S	GCGCAGTTTCCTT	.	175	91	119	0	.	90	C	178820448	T	C	178820448	3	2	66	1	0	0	0	0	1	0	0	0	613	1725	60	2	187	2	ANGPTL1	1	178820448	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	9123519	178820448	70430173	6	9085											
TNNT2	7139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201328352	201328352	+	Missense_Mutation	SNP	C	C	T	rs147940106		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TNNT2	NM_001276345	exon17	c.G883A	p.G295R	AGCGCCCGGTGAC	.	188	50	142	0	C|1.000;T|0.000	90	T	201328352	C	T	201328352	3	4	66	1	0	0	0	0	1	0	0	0	16328	652	23	1	17	1	TNNT2	1	201328352	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	22507904	201328352	47922269	7	9086											
E2F6	1876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11593707	11593707	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	E2F6	NM_198256	exon4	c.380+1G>C	.	AACTCACATCCAT	.	113	38	186	0	.	838	G	11593707	C	G	11593707	5	3	66	1	0	0	0	0	0	0	1	0	4871	492	17	4	484	4	E2F6	2	11593707	Splice_Site	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		11593707	231605666	8	9087											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231070	21231070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	APOB	NM_000384	exon26	c.C8670A	p.F2890L	TTTGTGGAAGTAT	.	141	53	157	0	.	175	T	21231070	G	T	21231070	3	4	66	1	0	0	0	0	1	0	0	0	785	1165	41	3	5037	3	APOB	2	21231070	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	9637363	21231070	221968303	9	9088											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32602706	32602706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BIRC6	NM_016252	exon2	c.G376T	p.V126F	GATAAAGTTATAT	.	157	37	167	0	.	233	T	32602706	G	T	32602706	3	4	66	1	0	0	0	0	1	0	0	0	1438	1029	36	3	382	3	BIRC6	2	32602706	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	11371636	32602706	210596667	10	9089											
HEATR5B	54497	broad.mit.edu;bcgsc.ca	37	2	37283748	37283748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	HEATR5B	NM_019024	exon16	c.A2234G	p.N745S	GCACTGTTTGGCT	.	147	6	149	0	.	142	C	37283748	T	C	37283748	3	2	66	1	0	0	0	0	1	0	0	0	7032	1725	60	2	4065	2	HEATR5B	2	37283748	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	4681042	37283748	205915625	11	9090											
AAK1	22848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69757151	69757151	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AAK1	NM_014911	exon8	c.A860T	p.H287L	AGGCAGTGCATGT	.	163	61	215	1	.	333	A	69757151	T	A	69757151	3	1	66	1	0	0	0	0	1	0	0	0	16	1696	59	4	2085	4	AAK1	2	69757151	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	32473403	69757151	173442222	12	9091											
TGFA	7039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70742002	70742002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TGFA	NM_001099691	exon2	c.C83G	p.S28C	AGCGGGGACGTGC	.	84	24	96	0	.	683	C	70742002	G	C	70742002	3	2	66	1	0	0	0	0	1	0	0	0	15812	1174	41	4	419	4	TGFA	2	70742002	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	984851	70742002	172457371	13	9092											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84931193	84931193	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DNAH6	NM_001370	exon51	c.C8232T	p.V2744V	TTAGGTCCGTAAC	.	62	29	73	0	.	69	T	84931193	C	T	84931193	2	4	66	1	0	0	0	0	0	0	0	1	4605	842	30	3		3	DNAH6	2	84931193	Silent	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	14189191	84931193	158268180	14	9093											
ACVR1C	130399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158390474	158390474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACVR1C	NM_145259	exon9	c.A1438G	p.K480E	TAGTCTTCTTAAT	.	64	25	54	0	.	1006	C	158390474	T	C	158390474	3	2	66	1	0	0	0	0	1	0	0	0	222	1792	62	2	47	2	ACVR1C	2	158390474	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	73459281	158390474	84808899	15	9094											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201478589	201478589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AOX1	NM_001159	exon15	c.T1511G	p.L504W	CCCTTTTGGGCTC	.	178	67	159	0	.	96	G	201478589	T	G	201478589	3	3	66	1	0	0	0	0	1	0	0	0	729	1821	63	5	1569	5	AOX1	2	201478589	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	43088115	201478589	41720784	16	9095											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204304792	204304792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RAPH1	NM_213589	exon14	c.C3121T	p.L1041F	GTTGGAGAACTCC	.	64	22	114	0	.	1151	A	204304792	G	A	204304792	3	1	66	1	0	0	0	0	1	0	0	0	13050	942	33	3	635	3	RAPH1	2	204304792	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	2826203	204304792	38894581	17	9096											
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241712532	241712532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KIF1A	NM_001244008	exon13	c.C1179G	p.D393E	CTCACTGTCAGTG	.	87	34	114	0	.	91	C	241712532	G	C	241712532	3	2	66	1	0	0	0	0	1	0	0	0	8283	1391	48	4	4033	4	KIF1A	2	241712532	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	37407740	241712532	1486841	18	9097											
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49739578	49739578	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RNF123	NM_022064	exon18	c.1557+1G>A	.	AATGGGGTGAGTG	.	168	63	176	0	.	584	A	49739578	G	A	49739578	5	1	66	1	0	0	0	0	0	0	1	0	13433	1275	44	3	1624	3	RNF123	3	49739578	Splice_Site	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10		49739578	148282852	19	9098											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	64579956	64579956	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS9	NM_182920	exon28	c.G4334A	p.W1445X	GTACTCCATGCAG	.	144	55	148	0	.	230	T	64579956	C	T	64579956	4	4	66	1	0	0	0	0	0	1	0	0	273	595	21	3	1521	3	ADAMTS9	3	64579956	Nonsense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	14840378	64579956	133442474	20	9099											
COL6A6	131873	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130286894	130286894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	COL6A6	NM_001102608	exon5	c.G1847T	p.C616F	CAGCTTGCAAAGA	.	78	34	105	2	.	76	T	130286894	G	T	130286894	3	4	66	1	0	0	0	0	1	0	0	0	3703	1319	46	3	1865	3	COL6A6	3	130286894	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	65706938	130286894	67735536	21	9100											
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184910061	184910061	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C2125T	p.L709L	CTTTCAGGGGAGG	.	150	12	146	0	.	93	A	184910061	G	A	184910061	2	1	66	1	0	0	0	0	0	0	0	1	4982	991	35	3		3	EHHADH	3	184910061	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	54623167	184910061	13112369	22	9101			1	6		7	6	1026	N	G	9.461484e-16
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184910094	184910094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C2092G	p.L698V	TTTTTAGATAGTC	.	140	12	156	0	.	93	C	184910094	G	C	184910094	3	2	66	1	0	0	0	0	1	0	0	0	4982	933	33	4	83	4	EHHADH	3	184910094	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	33	184910094	13112336	23	9102			1	6		7	6	1026	N	G	9.461484e-16
EHHADH	1962	hgsc.bcm.edu;bcgsc.ca	37	3	184910328	184910328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1858A	p.L620I	GTTCAAGGATCTC	.	106	7	123	0	.	93	T	184910328	G	T	184910328	3	4	66	1	0	0	0	0	1	0	0	0	4982	1000	35	3	317	3	EHHADH	3	184910328	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	234	184910328	13112102	24	9103			1	6		7	6	1026	N	G	9.461484e-16
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184910834	184910834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1352T	p.S451F	GGGGAAGAGTATT	.	173	11	184	0	.	93	A	184910834	G	A	184910834	3	1	66	1	0	0	0	0	1	0	0	0	4982	942	33	3	823	3	EHHADH	3	184910834	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	506	184910834	13111596	25	9104			1	6		7	6	1026	N	G	9.461484e-16
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184910910	184910910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1276T	p.H426Y	CCAAGTGAGGACG	.	169	15	194	0	.	93	A	184910910	G	A	184910910	3	1	66	1	0	0	0	0	1	0	0	0	4982	1290	45	3	899	3	EHHADH	3	184910910	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	76	184910910	13111520	26	9105	51	2	1	6		7	6	1026	N	G	9.461484e-16
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184910913	184910913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1273T	p.P425S	AGTGAGGACGATC	.	164	13	193	0	.	93	A	184910913	G	A	184910913	3	1	66	1	0	0	0	0	1	0	0	0	4982	1174	41	3	902	3	EHHADH	3	184910913	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	3	184910913	13111517	27	9106	51	2	1	6		7	6	1026	N	G	9.461484e-16
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184911086	184911086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1100T	p.S367L	ACAGATGAAGTTA	.	203	14	176	0	.	93	A	184911086	G	A	184911086	3	1	66	1	0	0	0	0	1	0	0	0	4982	1294	45	3	1075	3	EHHADH	3	184911086	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	173	184911086	13111344	28	9107			1	6		7	6	1026	N	G	9.461484e-16
IDUA	3425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	994398	994398	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	IDUA	NM_000203	exon3	c.300-2A>T	.	TTCTGCAGGGGGT	.	212	87	223	0	.	91	T	994398	A	T	994398	5	4	66	1	0	0	0	0	0	0	1	0	7504	202	7	4	308	4	IDUA	4	994398	Splice_Site	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		994398	190159878	29	9108											
APBB2	323	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	41015987	41015987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	APBB2	NM_173075	exon6	c.A448G	p.I150V	GTAAAATCTCACA	.	147	60	184	1	.	92	C	41015987	T	C	41015987	3	2	66	1	0	0	0	0	1	0	0	0	761	1435	50	2	1883	2	APBB2	4	41015987	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	40021589	41015987	150138289	30	9109											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48578067	48578067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FRYL	NM_015030	exon24	c.G2701A	p.G901S	TATAGCCGCTATC	.	71	5	89	0	.	69	T	48578067	C	T	48578067	3	4	66	1	0	0	0	0	1	0	0	0	6064	652	23	1	6504	1	FRYL	4	48578067	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	7562080	48578067	142576209	31	9110											
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185709825	185709825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACSL1	NM_001995	exon3	c.T256A	p.Y86N	CATCATAGAAATA	.	40	16	49	0	.	92	T	185709825	A	T	185709825	3	4	66	1	0	0	0	0	1	0	0	0	177	420	15	4	1916	4	ACSL1	4	185709825	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	137131758	185709825	5444451	32	9111											
SKP2	6502	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36152875	36152875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SKP2	NM_032637	exon2	c.A11G	p.K4R	GCAGGAAGCACCT	.	43	4	67	0	.	1084	G	36152875	A	G	36152875	3	3	66	1	0	0	0	0	1	0	0	0	14362	72	3	2	17	2	SKP2	5	36152875	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		36152875	144762385	33	9112											
C7	730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40981550	40981550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	C7	NM_000587	exon18	c.A2407T	p.S803C	GGGTTTAGCATTT	.	151	70	205	0	.	22	T	40981550	A	T	40981550	3	4	66	1	0	0	0	0	1	0	0	0	2375	420	15	4	2477	4	C7	5	40981550	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	4828675	40981550	139933710	34	9113											
AP3S1	1176	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115249063	115249063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AP3S1	NM_001284	exon6	c.G458C	p.G153A	AGGCTGGCTTAGC	.	97	22	110	1	.	90	C	115249063	G	C	115249063	3	2	66	1	0	0	0	0	1	0	0	0	749	1203	42	4	480	4	AP3S1	5	115249063	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	74267513	115249063	65666197	35	9114											
CEP120	153241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	122725672	122725672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CEP120	NM_153223	exon9	c.G1201A	p.E401K	CACTTTCTGTTGC	.	282	100	339	0	.	91	T	122725672	C	T	122725672	3	4	66	1	0	0	0	0	1	0	0	0	3246	922	32	3	1811	3	CEP120	5	122725672	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	7476609	122725672	58189588	36	9115											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222268	140222268	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PCDHA8	NM_031856	exon1	c.G1362A	p.A454A	TCCGGCGTTCGCG	.	353	142	428	0	.	92	A	140222268	G	A	140222268	2	1	66	1	0	0	0	0	0	0	0	1	11530	1132	40	1		1	PCDHA8	5	140222268	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	17496596	140222268	40692992	37	9116											
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736448	170736448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TLX3	NM_021025	exon1	c.C79A	p.P27T	AACAGCCCGGACC	.	28	10	23	0	.	658	A	170736448	C	A	170736448	3	1	66	1	0	0	0	0	1	0	0	0	15959	623	22	3	81	3	TLX3	5	170736448	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	30514180	170736448	10178812	38	9117											
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176305056	176305056	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UNC5A	NM_133369	exon11	c.G1797A	p.A599A	GTTTGCGCCGGTG	.	87	47	94	0	.	91	A	176305056	G	A	176305056	2	1	66	1	0	0	0	0	0	0	0	1	16988	1074	38	1		1	UNC5A	5	176305056	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	5568608	176305056	4610204	39	9118											
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30709635	30709635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FLOT1	NM_005803	exon3	c.G53A	p.R18Q	GGGCTTCGGCAGA	.	80	37	91	0	.	90	T	30709635	C	T	30709635	3	4	66	1	0	0	0	0	1	0	0	0	5936	884	31	1	1274	1	FLOT1	6	30709635	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		30709635	140405432	40	9119											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42585071	42585071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UBR2	NM_015255	exon11	c.A1276G	p.T426A	GCACCTACTCTGG	.	147	62	157	0	.	94	G	42585071	A	G	42585071	3	3	66	1	0	0	0	0	1	0	0	0	16899	391	14	2	1318	2	UBR2	6	42585071	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	11875436	42585071	128529996	41	9120											
TFAP2D	83741	ucsc.edu;bcgsc.ca	37	6	50681772	50681772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TFAP2D	NM_172238	exon1	c.T4C	p.S2P	AACATGTCAACTA	.	47	4	38	0	.	159	C	50681772	T	C	50681772	3	2	66	1	0	0	0	0	1	0	0	0	15787	1667	58	2	6	2	TFAP2D	6	50681772	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	8096701	50681772	120433295	42	9121											
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	55198738	55198738	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GFRAL	NM_207410	exon3	c.A312G	p.K104K	CAATAAATCAGGT	.	20	11	32	0	.	154	G	55198738	A	G	55198738	2	3	66	1	0	0	0	0	0	0	0	1	6351	98	4	2		2	GFRAL	6	55198738	Silent	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	4516966	55198738	115916329	43	9122											
EGFR	1956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55273125	55273125	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EGFR	NM_005228	exon28	c.A3448T	p.T1150S	AACAGCACATTCG	.	129	48	143	1	.	44910	T	55273125	A	T	55273125	3	4	66	1	0	0	0	0	1	0	0	0	4967	159	6	4	3822	4	EGFR	7	55273125	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		55273125	103865538	44	9123											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82580517	82580517	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PCLO	NM_014510	exon6	c.A9387C	p.S3129S	AGGTAATGAAGTC	.	153	57	184	0	.	29	G	82580517	T	G	82580517	2	3	66	1	0	0	0	0	0	0	0	1	11583	1451	51	5		5	PCLO	7	82580517	Silent	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	27307392	82580517	76558146	45	9124											
MRPS33	51650	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140710231	140710231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MRPS33	NM_016071	exon2	c.T203C	p.L68P	AGTCCAAGAAATC	.	139	58	179	1	.	90	G	140710231	A	G	140710231	3	3	66	1	0	0	0	0	1	0	0	0	9842	72	3	2	125	2	MRPS33	7	140710231	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	58129714	140710231	18428432	46	9125											
SH2D4A	63898	ucsc.edu;bcgsc.ca	37	8	19218714	19218714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SH2D4A	NM_022071	exon6	c.A595G	p.K199E	AAACAGAAGAAAG	.	28	4	50	0	.	90	G	19218714	A	G	19218714	3	3	66	1	0	0	0	0	1	0	0	0	14235	260	9	2	663	2	SH2D4A	8	19218714	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		19218714	127145308	47	9126											
STAU2	27067	broad.mit.edu;bcgsc.ca	37	8	74600947	74600947	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	STAU2	NM_001164380	exon5	c.A216G	p.E72E	CGTAGATTCAGTC	.	153	51	216	1	.	90	C	74600947	T	C	74600947	2	2	66	1	0	0	0	0	0	0	0	1	15272	1490	52	2		2	STAU2	8	74600947	Silent	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	55382233	74600947	71763075	48	9127											
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88885313	88885313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DCAF4L2	NM_152418	exon1	c.T887C	p.L296P	TCCCACAGCTTGA	.	189	48	214	0	.	91	G	88885313	A	G	88885313	3	3	66	1	0	0	0	0	1	0	0	0	4272	188	7	2	304	2	DCAF4L2	8	88885313	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	14284366	88885313	57478709	49	9128											
TAF2	6873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120807828	120807828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TAF2	NM_003184	exon9	c.G1135A	p.G379R	AAAGTCCATAGAT	.	111	48	162	1	.	274	T	120807828	C	T	120807828	3	4	66	1	0	0	0	0	1	0	0	0	15521	603	21	3	2536	3	TAF2	8	120807828	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	31922515	120807828	25556194	50	9129											
CNTNAP3	79937	broad.mit.edu;bcgsc.ca	37	9	39099959	39099959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CNTNAP3	NM_033655	exon18	c.G2944T	p.V982F	AGGTGACCCCCCT	.	272	117	285	0	.	91	A	39099959	C	A	39099959	3	1	66	1	0	0	0	0	1	0	0	0	3648	507	18	3	950	3	CNTNAP3	9	39099959	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		39099959	102113472	51	9130											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	135782757	135782757	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TSC1	NM_000368	exon13	c.G1264T	p.E422X	TCTCTTCCTGAAA	.	93	60	169	0	.	1906	A	135782757	C	A	135782757	4	1	66	1	0	0	0	0	0	1	0	0	16602	869	30	3	2274	3	TSC1	9	135782757	Nonsense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	96682798	135782757	5430674	52	9131											
PARD3	56288	ucsc.edu;bcgsc.ca	37	10	34636998	34636998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PARD3	NM_001184792	exon15	c.A2113G	p.T705A	ACGCTGTTTCAAT	.	43	4	43	0	.	92	C	34636998	T	C	34636998	3	2	66	1	0	0	0	0	1	0	0	0	11443	1725	60	2	2036	2	PARD3	10	34636998	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10		34636998	100897749	53	9132											
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93722349	93722349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BTAF1	NM_003972	exon12	c.C1318G	p.Q440E	GGACTCCAGGATC	.	375	150	405	0	.	92	G	93722349	C	G	93722349	3	3	66	1	0	0	0	0	1	0	0	0	1536	595	21	4	1364	4	BTAF1	10	93722349	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	59085351	93722349	41812398	54	9133											
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100017553	100017553	+	Missense_Mutation	SNP	G	G	T	rs11189525	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LOXL4	NM_032211	exon8	c.C1114A	p.P372T	GGATGGGCCCTAG	.	133	59	144	0	G|0.998;T|0.002	230	T	100017553	G	T	100017553	3	4	66	1	0	0	0	0	1	0	0	0	8902	1203	42	3	1188	3	LOXL4	10	100017553	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	6295204	100017553	35517194	55	9134											
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	432029	432029	+	Missense_Mutation	SNP	C	C	T	rs139380371		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ANO9	NM_001012302	exon5	c.G376A	p.V126I	TGACAACGAAGTT	.	89	30	86	0	C|1.000;T|0.000	227	T	432029	C	T	432029	3	4	66	1	0	0	0	0	1	0	0	0	704	536	19	1	2048	1	ANO9	11	432029	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		432029	134574487	56	9135											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6692504	6692504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CHD4	NM_001273	exon26	c.A3920G	p.E1307G	ACACTTTCTTCCT	.	159	55	180	0	.	228	C	6692504	T	C	6692504	3	2	66	1	0	0	0	0	1	0	0	0	3327	1783	62	2	1878	2	CHD4	12	6692504	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10		6692504	127159391	57	9136											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43792900	43792900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS20	NM_025003	exon29	c.G4421T	p.C1474F	GAAGGGCATCTGA	.	147	51	177	0	.	795	A	43792900	C	A	43792900	3	1	66	1	0	0	0	0	1	0	0	0	266	710	25	3	1354	3	ADAMTS20	12	43792900	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	37100396	43792900	90058995	58	9137											
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49170256	49170256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADCY6	NM_020983	exon7	c.A1490G	p.N497S	ACATCATTGGACC	.	95	36	131	0	.	90	C	49170256	T	C	49170256	3	2	66	1	0	0	0	0	1	0	0	0	298	1493	52	2	2080	2	ADCY6	12	49170256	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	5377356	49170256	84681639	59	9138											
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	114386746	114386746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RBM19	NM_001146699	exon10	c.G1168A	p.G390R	TCTCCCCGAGTAT	.	260	93	321	0	.	95	T	114386746	C	T	114386746	3	4	66	1	0	0	0	0	1	0	0	0	13121	652	23	1	1774	1	RBM19	12	114386746	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	65216490	114386746	19465149	60	9139											
RNF17	56163	ucsc.edu;bcgsc.ca	37	13	25439064	25439064	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RNF17	NM_031277	exon29	c.A4029G	p.G1343G	TGATGGAATGTCA	.	45	4	50	0	.	228	G	25439064	A	G	25439064	2	3	66	1	0	0	0	0	0	0	0	1	13461	233	9	2		2	RNF17	13	25439064	Silent	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		25439064	89730814	61	9140											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52548363	52548363	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ATP7B	NM_000053	exon2	c.C993T	p.A331A	CCCTTCGGCTCCA	.	38	7	69	0	.	92	A	52548363	G	A	52548363	2	1	66	1	0	0	0	0	0	0	0	1	1191	1103	39	1		1	ATP7B	13	52548363	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	27109299	52548363	62621515	62	9141											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42357103	42357103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRFN5	NM_152447	exon3	c.A1275T	p.E425D	GGCAGAAGCTACA	.	141	59	166	0	.	97	T	42357103	A	T	42357103	3	4	66	1	0	0	0	0	1	0	0	0	8941	69	3	4	1277	4	LRFN5	14	42357103	Missense_Mutation	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		42357103	64992437	63	9142											
DACT1	51339	broad.mit.edu;mdanderson.org	37	14	59112758	59112758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DACT1	NM_016651	exon4	c.G1417T	p.E473X	ACAGGGGAGTCCC	.	28	8	29	0	.	291	T	59112758	G	T	59112758	4	4	66	1	0	0	0	0	0	1	0	0	4222	1175	41	3	1431	3	DACT1	14	59112758	Nonsense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	16755655	59112758	48236782	64	9143											
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70925176	70925176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAM21	NM_003813	exon2	c.T960G	p.I320M	ACCTATTGATTGT	.	178	82	223	0	.	92	G	70925176	T	G	70925176	3	3	66	1	0	0	0	0	1	0	0	0	243	1800	63	5	962	5	ADAM21	14	70925176	Missense_Mutation	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10	11812418	70925176	36424364	65	9144											
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75798215	75798215	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PTPN9	NM_002833	exon7	c.C769G	p.H257D	CTGGGTGGCCGTT	.	207	83	203	0	.	226	C	75798215	G	C	75798215	3	2	66	1	0	0	0	0	1	0	0	0	12794	1348	47	4	1040	4	PTPN9	15	75798215	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10		75798215	26733177	66	9145											
MESDC2	23184	broad.mit.edu;mdanderson.org	37	15	81282119	81282119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MESDC2	NM_015154	exon1	c.G14A	p.R5K	GCCCACCTGGAAG	.	9	3	23	0	.	90	T	81282119	C	T	81282119	3	4	66	1	0	0	0	0	1	0	0	0	9481	681	24	3	702	3	MESDC2	15	81282119	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	5483904	81282119	21249273	67	9146											
SRRM2	23524	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2814972	2814972	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SRRM2	NM_016333	exon11	c.T4443C	p.D1481D	ATGTGATTCTTCC	.	25	8	43	1	.	93	C	2814972	T	C	2814972	2	2	66	1	0	0	0	0	0	0	0	1	15168	1490	52	2		2	SRRM2	16	2814972	Silent	SNP	T	TCGA-DD-A1EK-01A-11D-A20W-10		2814972	87539781	68	9147											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38933922	38933922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KRT27	NM_181537	exon6	c.G1035T	p.Q345H	CTGGATCTGTGCC	.	133	69	145	0	.	90	A	38933922	C	A	38933922	3	1	66	1	0	0	0	0	1	0	0	0	8464	912	32	3	356	3	KRT27	17	38933922	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		38933922	42261288	69	9148											
UTS2R	2837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80332626	80332626	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UTS2R	NM_018949	exon1	c.C426A	p.T142T	GCTGACCGTCATG	.	56	24	71	0	.	153	A	80332626	C	A	80332626	2	1	66	1	0	0	0	0	0	0	0	1	17103	639	23	1		1	UTS2R	17	80332626	Silent	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10	41398704	80332626	862584	70	9149											
ZNF20	7568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12243520	12243520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZNF20	NM_021143	exon4	c.G1481A	p.R494Q	TGATATCGAATGT	.	70	25	102	0	.	22	T	12243520	C	T	12243520	3	4	66	1	0	0	0	0	1	0	0	0	17758	884	31	1	121	1	ZNF20	19	12243520	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		12243520	46885463	71	9150											
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42753847	42753847	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ERF	NM_006494	exon4	c.T417G	p.G139G	GTGGCTACCACCC	.	46	22	74	0	.	658	C	42753847	A	C	42753847	2	2	66	1	0	0	0	0	0	0	0	1	5221	378	14	5		5	ERF	19	42753847	Silent	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10	30510327	42753847	16375136	72	9151											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49703678	49703678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TRPM4	NM_017636	exon18	c.G2767A	p.V923M	GTCATCGTGAGCA	.	68	34	75	0	.	91	A	49703678	G	A	49703678	3	1	66	1	0	0	0	0	1	0	0	0	16585	1145	40	1	2837	1	TRPM4	19	49703678	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	6949831	49703678	9425305	73	9152											
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62373481	62373481	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC2A4RG	NM_020062	exon5	c.580-2A>G	.	TGCTGCAGAGCCC	.	88	26	124	0	.	90	G	62373481	A	G	62373481	5	3	66	1	0	0	0	0	0	0	1	0	14547	202	7	2	596	2	SLC2A4RG	20	62373481	Splice_Site	SNP	A	TCGA-DD-A1EK-01A-11D-A20W-10		62373481	652039	74	9153											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41719859	41719859	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DSCAM	NM_001271534	exon6	c.C948A	p.A316A	GATGGTGGCTTTC	.	56	21	69	0	.	101	T	41719859	G	T	41719859	2	4	66	1	0	0	0	0	0	0	0	1	4768	1335	47	3		3	DSCAM	21	41719859	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10		41719859	6410036	75	9154											
LRRC3	81543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	45876637	45876638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRRC3	NM_030891	exon2	c.110_111insC	p.C37fs	AGCCCTGCCGGTG	.	33	10	46	0	.	90	C	45876638	-	C	45876637	7	5	66	1	0	1	1	0	0	0	0	0	8984	1319	46	0	112	0	LRRC3	21	45876637	Frame_Shift_Ins	INS	-	TCGA-DD-A1EK-01A-11D-A20W-10	4156778	45876637	2253258	76	9155											
ASCC2	84164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30218403	30218403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ASCC2	NM_032204	exon5	c.C462A	p.F154L	AAAGAGGAAGTTA	.	78	31	89	0	.	90	T	30218403	G	T	30218403	3	4	66	1	0	0	0	0	1	0	0	0	1032	1165	41	3	1875	3	ASCC2	22	30218403	Missense_Mutation	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10		30218403	21086163	77	9156											
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100808329	100808329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ARMCX1	NM_016608	exon4	c.C416A	p.A139E	CCCTTGCACCGAG	.	73	35	92	0	.	134	A	100808329	C	A	100808329	3	1	66	1	0	0	0	0	1	0	0	0	959	710	25	3	418	3	ARMCX1	23	100808329	Missense_Mutation	SNP	C	TCGA-DD-A1EK-01A-11D-A20W-10		100808329	54462231	78	9157											
FAM58A	92002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152857988	152857988	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FAM58A	.	.	.	.	AGCCTCGACCTCG	.	167	79	161	0	.	130	T	152857988	G	T	152857988	2	4	66	1	0	0	0	0	0	0	0	1	5590	1045	37	1		1	FAM58A	23	152857988	Silent	SNP	G	TCGA-DD-A1EK-01A-11D-A20W-10	52049659	152857988	2412572	79	9158											
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3428670	3428670	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MEGF6	NM_001409	exon8	c.G876T	p.G292G	GGCCAGCCCTGCG	.	177	65	174	0	.	90	A	3428670	C	A	3428670	2	1	67	1	0	0	0	0	0	0	0	1	9462	726	26	3		3	MEGF6	1	3428670	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		3428670	245821951	1	9159											
PER3	8863	ucsc.edu;bcgsc.ca	37	1	7887221	7887221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PER3	NM_016831	exon17	c.A2208G	p.K736K	CAGGAAAGGGAAG	.	37	4	54	0	.	93	G	7887221	A	G	7887221	2	3	67	1	0	0	0	0	0	0	0	1	11731	69	3	2		2	PER3	1	7887221	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	4458551	7887221	241363400	2	9160											
ACTL8	81569	ucsc.edu;bcgsc.ca	37	1	18152622	18152622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ACTL8	NM_030812	exon3	c.A709G	p.T237A	AGCAACACCTATC	.	33	4	29	0	.	72	G	18152622	A	G	18152622	3	3	67	1	0	0	0	0	1	0	0	0	202	159	6	2	715	2	ACTL8	1	18152622	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	10265401	18152622	231097999	3	9161											
SYF2	25949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25558651	25558651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SYF2	NM_015484	exon2	c.G76T	p.A26S	GAGCGGCCAGCTC	.	90	41	80	0	.	90	A	25558651	C	A	25558651	3	1	67	1	0	0	0	0	1	0	0	0	15434	739	26	3	679	3	SYF2	1	25558651	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	7406029	25558651	223691970	4	9162											
DNAJC8	22826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28536505	28536505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAJC8	NM_014280	exon5	c.G377T	p.G126V	TCTTTTCCTGCCT	.	104	52	145	0	.	90	A	28536505	C	A	28536505	3	1	67	1	0	0	0	0	1	0	0	0	4655	855	30	3	404	3	DNAJC8	1	28536505	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	2977854	28536505	220714116	5	9163											
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28800595	28800595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PHACTR4	NM_023923	exon6	c.C1383G	p.S461R	TGACAGCTTTTCT	.	134	59	149	0	.	90	G	28800595	C	G	28800595	3	3	67	1	0	0	0	0	1	0	0	0	11812	796	28	4	1425	4	PHACTR4	1	28800595	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	264090	28800595	220450026	6	9164											
MACF1	23499	broad.mit.edu;bcgsc.ca	37	1	39788629	39788629	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MACF1	NM_012090	exon34	c.T4200C	p.T1400T	AACAACTCAGCAC	.	123	9	228	0	.	165	C	39788629	T	C	39788629	2	2	67	1	0	0	0	0	0	0	0	1	9144	1538	54	2		2	MACF1	1	39788629	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	10988034	39788629	209461992	7	9165											
SNX7	51375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99203828	99203828	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SNX7	NM_015976	exon8	c.G1161C	p.V387V	TAAAGTGGAATGT	.	84	32	114	0	.	229	C	99203828	G	C	99203828	2	2	67	1	0	0	0	0	0	0	0	1	14907	1335	47	4		4	SNX7	1	99203828	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	59415199	99203828	150046793	8	9166											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	113658968	113658968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRIG2	NM_014813	exon16	c.G2590T	p.E864X	CTGTCTGAGCCAC	.	162	66	192	0	.	229	T	113658968	G	T	113658968	4	4	67	1	0	0	0	0	0	1	0	0	8945	1291	45	3	2652	3	LRIG2	1	113658968	Nonsense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	14455140	113658968	135591653	9	9167											
MAGI3	260425	broad.mit.edu;bcgsc.ca	37	1	114137184	114137184	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MAGI3	NM_001142782	exon6	c.1018+2T>C	.	TGGAGGTAGAGAT	.	222	11	263	1	.	524	C	114137184	T	C	114137184	5	2	67	1	0	0	0	0	0	0	1	0	9192	1652	57	2	1042	2	MAGI3	1	114137184	Splice_Site	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	478216	114137184	135113437	10	9168											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153913916	153913916	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DENND4B	NM_014856	exon7	c.G1056C	p.A352A	GATGTGCCTGGGG	.	88	45	73	0	.	69	G	153913916	C	G	153913916	2	3	67	1	0	0	0	0	0	0	0	1	4434	753	26	4		4	DENND4B	1	153913916	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	39776732	153913916	95336705	11	9169											
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160305090	160305090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COPA	NM_001098398	exon4	c.G251T	p.R84L	AGACAGCGCCGAA	.	439	131	349	0	.	92	A	160305090	C	A	160305090	3	1	67	1	0	0	0	0	1	0	0	0	3727	768	27	1	3570	1	COPA	1	160305090	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	6391174	160305090	88945531	12	9170											
USF1	7391	ucsc.edu;bcgsc.ca	37	1	161011115	161011115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	USF1	NM_001276373	exon7	c.C559A	p.P187T	CTCACGGGGAATA	.	69	6	92	0	.	516	T	161011115	G	T	161011115	3	4	67	1	0	0	0	0	1	0	0	0	17029	1246	43	3	393	3	USF1	1	161011115	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	706025	161011115	88239506	13	9171											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200946358	200946358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KIF21B	NM_001252102	exon31	c.G4307T	p.R1436L	CAGATGCGGACGG	.	63	23	53	0	.	96	A	200946358	C	A	200946358	3	1	67	1	0	0	0	0	1	0	0	0	8289	768	27	1	626	1	KIF21B	1	200946358	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	39935243	200946358	48304263	14	9172											
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202702803	202702803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KDM5B	NM_006618	exon23	c.G3635T	p.G1212V	CGCAGGCCCTGTG	.	72	28	79	0	.	273	A	202702803	C	A	202702803	3	1	67	1	0	0	0	0	1	0	0	0	8134	739	26	3	1019	3	KDM5B	1	202702803	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	1756445	202702803	46547818	15	9173											
ADIPOR1	51094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202917500	202917500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ADIPOR1	NM_015999	exon3	c.G190T	p.V64L	CCCGCACCTCCTC	.	143	79	112	0	.	90	A	202917500	C	A	202917500	3	1	67	1	0	0	0	0	1	0	0	0	318	507	18	3	961	3	ADIPOR1	1	202917500	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	214697	202917500	46333121	16	9174											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228474710	228474710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	OBSCN	NM_001271223	exon40	c.G10801T	p.A3601S	GGGGGCGCCTGCA	.	62	48	71	0	.	403	T	228474710	G	T	228474710	3	4	67	1	0	0	0	0	1	0	0	0	10812	1087	38	1	9648	1	OBSCN	1	228474710	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	25557210	228474710	20775911	17	9175											
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247751752	247751752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	OR2G2	NM_001001915	exon1	c.T91G	p.F31V	GTTCTATTTGTGC	.	474	141	632	0	.	68	G	247751752	T	G	247751752	3	3	67	1	0	0	0	0	1	0	0	0	10998	1493	52	5	93	5	OR2G2	1	247751752	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	19277042	247751752	1498869	18	9176											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	29294437	29294437	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C2orf71	NM_001029883	exon1	c.C2691T	p.T897T	GCTGGCGGTGCTC	.	47	12	40	0	.	91	A	29294437	G	A	29294437	2	1	67	1	0	0	0	0	0	0	0	1	2191	1103	39	1		1	C2orf71	2	29294437	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10		29294437	213904936	19	9177											
AUP1	550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74755115	74755115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AUP1	NM_181575	exon7	c.690delT	p.H230fs	TTGGCGATGAACA	.	128	27	155	0	.	90	-	74755115	A	-	74755115	7	5	67	1	0	1	0	1	0	0	0	0	1220	330	12	0	566	0	AUP1	2	74755115	Frame_Shift_Del	DEL	A	TCGA-DD-A1EL-01A-11D-A152-10	45460678	74755115	168444258	20	9178											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105924415	105924415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TGFBRAP1	NM_004257	exon2	c.G344T	p.R115L	TTGATGCGGGCCC	.	45	23	48	0	.	91	A	105924415	C	A	105924415	3	1	67	1	0	0	0	0	1	0	0	0	15821	768	27	1	2282	1	TGFBRAP1	2	105924415	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	31169300	105924415	137274958	21	9179											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380318	109380318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RANBP2	NM_006267	exon20	c.G3323T	p.G1108V	TGTCTGGAATTTC	.	118	45	214	0	.	675	T	109380318	G	T	109380318	3	4	67	1	0	0	0	0	1	0	0	0	13028	1174	41	3	3401	3	RANBP2	2	109380318	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	3455903	109380318	133819055	22	9180											
MERTK	10461	broad.mit.edu;bcgsc.ca	37	2	112686781	112686781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MERTK	NM_006343	exon2	c.C146A	p.P49Q	ACACACCGCTGTT	.	140	7	162	0	.	1463	A	112686781	C	A	112686781	3	1	67	1	0	0	0	0	1	0	0	0	9479	652	23	1	152	1	MERTK	2	112686781	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	3306463	112686781	130512592	23	9181											
PRPF40A	55660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	153573934	153573934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PRPF40A	NM_017892	exon1	c.G20T	p.R7L	CGCCGGCGGCCAC	.	84	30	87	0	.	68	A	153573934	C	A	153573934	3	1	67	1	0	0	0	0	1	0	0	0	12571	768	27	1	2876	1	PRPF40A	2	153573934	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	40887153	153573934	89625439	24	9182											
XIRP2	129446	broad.mit.edu;bcgsc.ca	37	2	168105731	168105731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	XIRP2	NM_152381	exon9	c.C7829T	p.P2610L	TTCAACCCAGCCC	.	87	4	169	1	.	104	T	168105731	C	T	168105731	3	4	67	1	0	0	0	0	1	0	0	0	17427	623	22	3	7859	3	XIRP2	2	168105731	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	14531797	168105731	75093642	25	9183											
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179583632	179583632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TTN	NM_001267550	exon84	c.A24295G	p.S8099G	TGACACTGGTGAA	.	27	4	54	0	.	636	C	179583632	T	C	179583632	3	2	67	1	0	0	0	0	1	0	0	0	16732	1580	55	2	80350	2	TTN	2	179583632	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	11477901	179583632	63615741	26	9184											
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202251196	202251196	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TRAK2	NM_015049	exon14	c.C1708T	p.L570L	GATACAGAGTTTG	.	54	19	121	0	.	90	A	202251196	G	A	202251196	2	1	67	1	0	0	0	0	0	0	0	1	16447	933	33	3		3	TRAK2	2	202251196	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	22667564	202251196	40948177	27	9185											
MPP4	58538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202557682	202557682	+	Silent	SNP	C	C	T	rs201304506		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MPP4	NM_033066	exon3	c.G150A	p.V50V	GAGACACACTCCA	.	43	8	113	0	C|0.999;T|0.000	22	T	202557682	C	T	202557682	2	4	67	1	0	0	0	0	0	0	0	1	9736	465	17	3		3	MPP4	2	202557682	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	306486	202557682	40641691	28	9186											
TNS1	7145	ucsc.edu;bcgsc.ca	37	2	218745712	218745712	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TNS1	NM_022648	exon16	c.G963T	p.P321P	CACGCTCGGCCCG	.	42	5	57	0	.	156	A	218745712	C	A	218745712	2	1	67	1	0	0	0	0	0	0	0	1	16340	871	31	1		1	TNS1	2	218745712	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	16188030	218745712	24453661	29	9187											
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220079777	220079777	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ABCB6	NM_005689	exon6	c.G1182T	p.T394T	GGCCAGCGTGGGG	.	102	22	110	0	.	153	A	220079777	C	A	220079777	2	1	67	1	0	0	0	0	0	0	0	1	45	755	27	1		1	ABCB6	2	220079777	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	1334065	220079777	23119596	30	9188											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230667054	230667054	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TRIP12	NM_004238	exon20	c.C2895T	p.A965A	AGCTGTGGCTGTC	.	73	18	111	0	.	572	A	230667054	G	A	230667054	2	1	67	1	0	0	0	0	0	0	0	1	16553	1335	47	3		3	TRIP12	2	230667054	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	10587277	230667054	12532319	31	9189											
COL6A3	1293	broad.mit.edu;bcgsc.ca	37	2	238280490	238280490	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COL6A3	NM_004369	exon9	c.G4170A	p.S1390S	GCTCACCGAGAAC	.	81	7	97	0	.	526	T	238280490	C	T	238280490	2	4	67	1	0	0	0	0	0	0	0	1	3701	639	23	1		1	COL6A3	2	238280490	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	7613436	238280490	4918883	32	9190											
ARPP21	10777	ucsc.edu;bcgsc.ca	37	3	35729300	35729300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ARPP21	NM_001267619	exon5	c.T331C	p.S111P	GATGACTCTGAAA	.	33	4	299	0	.	93	C	35729300	T	C	35729300	3	2	67	1	0	0	0	0	1	0	0	0	978	1551	54	2	358	2	ARPP21	3	35729300	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10		35729300	162293130	33	9191											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	134	54	251	0	.	24361	C	41266110	A	C	41266110	3	2	67	1	0	0	0	0	1	0	0	0	4016	217	8	5	113	5	CTNNB1	3	41266110	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	5536810	41266110	156756320	34	9192											
DOCK3	1795	bcgsc.ca;mdanderson.org	37	3	51398052	51398052	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DOCK3	NM_004947	exon47	c.C4995T	p.T1665T	GATGACCCACCGG	.	35	16	46	1	.	22	T	51398052	C	T	51398052	2	4	67	1	0	0	0	0	0	0	0	1	4688	610	22	3		3	DOCK3	3	51398052	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	10131942	51398052	146624378	35	9193											
MAGI1	9223	ucsc.edu;bcgsc.ca	37	3	65438959	65438959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MAGI1	NM_001033057	exon6	c.A1016G	p.K339R	AGTGGCTTCTGCT	.	42	4	62	0	.	661	C	65438959	T	C	65438959	3	2	67	1	0	0	0	0	1	0	0	0	9190	1609	56	2	3678	2	MAGI1	3	65438959	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	14040907	65438959	132583471	36	9194											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77651546	77651546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ROBO2	NM_002942	exon20	c.G3040A	p.D1014N	GCTGTCGATCTGC	.	282	115	238	0	.	328	A	77651546	G	A	77651546	3	1	67	1	0	0	0	0	1	0	0	0	13514	1058	37	1	3120	1	ROBO2	3	77651546	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	12212587	77651546	120370884	37	9195											
ROBO1	6091	ucsc.edu;bcgsc.ca	37	3	79639053	79639053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ROBO1	NM_002941	exon2	c.G9T	p.W3C	ATGTTTCCATTTC	.	44	4	162	0	.	67	A	79639053	C	A	79639053	3	1	67	1	0	0	0	0	1	0	0	0	13513	856	30	3	5138	3	ROBO1	3	79639053	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	1987507	79639053	118383377	38	9196											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129279234	129279234	+	Missense_Mutation	SNP	C	C	T	rs201100072	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PLXND1	NM_015103	exon31	c.G5072A	p.R1691Q	CTCTGCCGGTGAG	.	152	62	158	0	C|0.999;G|0.000	90	T	129279234	C	T	129279234	3	4	67	1	0	0	0	0	1	0	0	0	12127	652	23	1	729	1	PLXND1	3	129279234	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	49640181	129279234	68743196	39	9197											
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281020	140281020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CLSTN2	NM_022131	exon13	c.A2082T	p.L694F	TAACTTAGATTTC	.	95	40	90	0	.	157	T	140281020	A	T	140281020	3	4	67	1	0	0	0	0	1	0	0	0	3562	417	15	4	2132	4	CLSTN2	3	140281020	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	11001786	140281020	57741410	40	9198											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177219	44177219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KCTD8	NM_198353	exon2	c.A1010G	p.K337R	TCATGTTTCCTAT	.	106	40	149	0	.	92	C	44177219	T	C	44177219	3	2	67	1	0	0	0	0	1	0	0	0	8115	1841	64	2	415	2	KCTD8	4	44177219	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10		44177219	146977057	41	9199											
KIAA0947	23379	broad.mit.edu;bcgsc.ca	37	5	5466617	5466617	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KIAA0947	NM_015325	exon14	c.6061+2T>C	.	AGAAGGTATGCTT	.	129	7	95	1	.	48	C	5466617	T	C	5466617	5	2	67	1	0	0	0	0	0	0	1	0	8202	1652	57	2	6117	2	KIAA0947	5	5466617	Splice_Site	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10		5466617	175448643	42	9200											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11082847	11082847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CTNND2	NM_001332	exon16	c.C2749T	p.R917W	TGTTCCGCAGCGC	.	115	44	172	0	.	293	A	11082847	G	A	11082847	3	1	67	1	0	0	0	0	1	0	0	0	4020	1086	38	1	956	1	CTNND2	5	11082847	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	5616230	11082847	169832413	43	9201											
SEPP1	6414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	42804757	42804757	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SEPP1	NM_005410	exon5	c.534+1G>T	.	AAAATACCGTGAG	.	314	106	304	1	.	68	A	42804757	C	A	42804757	5	1	67	1	0	0	0	0	0	0	1	0	14057	521	18	3	618	3	SEPP1	5	42804757	Splice_Site	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	31721910	42804757	138110503	44	9202											
ITGA2	3673	ucsc.edu;bcgsc.ca	37	5	52353865	52353865	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ITGA2	NM_002203	exon10	c.A1107G	p.Q369Q	TGTTCAAGGAGGA	.	31	4	145	0	.	226	G	52353865	A	G	52353865	2	3	67	1	0	0	0	0	0	0	0	1	7875	69	3	2		2	ITGA2	5	52353865	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	9549108	52353865	128561395	45	9203											
REEP5	7905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112238112	112238112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	REEP5	NM_005669	exon3	c.T316C	p.F106L	ACAGGAAGATATC	.	128	60	142	0	.	280	G	112238112	A	G	112238112	3	3	67	1	0	0	0	0	1	0	0	0	13208	72	3	2	265	2	REEP5	5	112238112	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	59884247	112238112	68677148	46	9204											
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798829	140798829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCDHGB7	NM_018927	exon1	c.G1403A	p.G468D	AGCCGGGTGCCTC	.	129	29	147	0	.	29	A	140798829	G	A	140798829	3	1	67	1	0	0	0	0	1	0	0	0	11568	1261	44	3	1405	3	PCDHGB7	5	140798829	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	28560717	140798829	40116431	47	9205											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17764367	17764367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KIF13A	NM_022113	exon39	c.G5392T	p.A1798S	AAAAGGCTGCCTC	.	134	55	149	0	.	137	A	17764367	C	A	17764367	3	1	67	1	0	0	0	0	1	0	0	0	8274	797	28	3	54	3	KIF13A	6	17764367	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		17764367	153350700	48	9206											
SLC17A4	10050	ucsc.edu;bcgsc.ca	37	6	25762253	25762253	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC17A4	NM_005495	exon2	c.C63T	p.N21N	TTTAAACGTGGCT	.	49	4	53	0	.	91	T	25762253	C	T	25762253	2	4	67	1	0	0	0	0	0	0	0	1	14419	535	19	1		1	SLC17A4	6	25762253	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	7997886	25762253	145352814	49	9207											
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33144991	33144991	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COL11A2	NM_080680	exon24	c.G1983T	p.G661G	CTGGGGCCCGGGA	.	63	16	65	0	.	95	A	33144991	C	A	33144991	2	1	67	1	0	0	0	0	0	0	0	1	3668	726	26	3		3	COL11A2	6	33144991	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	7382738	33144991	137970076	50	9208											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	38747836	38747836	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH8	NM_001206927	exon15	c.A2134T	p.K712X	GCTACTAAGAAGG	.	97	29	115	0	.	615	T	38747836	A	T	38747836	4	4	67	1	0	0	0	0	0	1	0	0	4607	363	13	4	1525	4	DNAH8	6	38747836	Nonsense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	5602845	38747836	132367231	51	9209											
KLHL31	401265	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53517092	53517092	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KLHL31	NM_001003760	exon3	c.C1209A	p.A403A	CATGCTGGCCAGG	.	84	37	69	1	.	23	T	53517092	G	T	53517092	2	4	67	1	0	0	0	0	0	0	0	1	8385	1335	47	3		3	KLHL31	6	53517092	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	14769256	53517092	117597975	52	9210											
LAMA4	3910	ucsc.edu;bcgsc.ca	37	6	112457355	112457355	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LAMA4	NM_001105206	exon25	c.A3384G	p.K1128K	TTGAGCTTTCTTT	.	36	4	65	0	.	140	C	112457355	T	C	112457355	2	2	67	1	0	0	0	0	0	0	0	1	8608	1606	56	2		2	LAMA4	6	112457355	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	58940263	112457355	58657712	53	9211											
NT5DC1	221294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116542390	116542390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	NT5DC1	NM_152729	exon7	c.G703A	p.G235R	ATTCTTGGGTGAG	.	188	63	370	0	.	226	A	116542390	G	A	116542390	3	1	67	1	0	0	0	0	1	0	0	0	10690	1362	47	3	729	3	NT5DC1	6	116542390	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	4085035	116542390	54572677	54	9212											
ALDH8A1	64577	broad.mit.edu;bcgsc.ca	37	6	135265028	135265028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ALDH8A1	NM_022568	exon2	c.T215C	p.V72A	TTCAGGACCCGTG	.	54	5	47	1	.	94	G	135265028	A	G	135265028	3	3	67	1	0	0	0	0	1	0	0	0	505	275	10	2	1272	2	ALDH8A1	6	135265028	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	18722638	135265028	35850039	55	9213											
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167708073	167708073	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	UNC93A	NM_018974	exon2	c.G156A	p.L52L	GCTCCTGTCCTCC	.	115	43	101	0	.	90	A	167708073	G	A	167708073	2	1	67	1	0	0	0	0	0	0	0	1	16993	1364	48	3		3	UNC93A	6	167708073	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	32443045	167708073	3406994	56	9214											
SEMA3D	223117	ucsc.edu;bcgsc.ca	37	7	84671523	84671523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SEMA3D	NM_152754	exon8	c.G940A	p.G314R	CACTTCCAGGAAT	.	41	5	173	0	.	138	T	84671523	C	T	84671523	3	4	67	1	0	0	0	0	1	0	0	0	14027	603	21	3	1433	3	SEMA3D	7	84671523	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		84671523	74467140	57	9215											
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123143008	123143008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IQUB	NM_178827	exon5	c.G857A	p.R286K	GTATCCCTACAAA	.	77	48	176	1	.	156	T	123143008	C	T	123143008	3	4	67	1	0	0	0	0	1	0	0	0	7820	681	24	3	1554	3	IQUB	7	123143008	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	38471485	123143008	35995655	58	9216											
DEFB134	613211	ucsc.edu;bcgsc.ca	37	8	11851595	11851595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DEFB134	NM_001033019	exon2	c.G95T	p.C32F	TTATAGCATTTCT	.	47	4	99	0	.	90	A	11851595	C	A	11851595	3	1	67	1	0	0	0	0	1	0	0	0	4418	710	25	3	108	3	DEFB134	8	11851595	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		11851595	134512427	59	9217											
ADAM28	10863	hgsc.bcm.edu;bcgsc.ca	37	8	24193031	24193031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ADAM28	NM_014265	exon14	c.T1444C	p.S482P	GGTAAATCTGGTA	.	120	8	230	0	.	228	C	24193031	T	C	24193031	3	2	67	1	0	0	0	0	1	0	0	0	246	1435	50	2	1498	2	ADAM28	8	24193031	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	12341436	24193031	122170991	60	9218											
PLEC	5339	ucsc.edu;bcgsc.ca	37	8	144994696	144994696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PLEC	NM_201380	exon32	c.C9704A	p.A3235D	TTCTCGGCTGATA	.	38	4	32	0	.	141	T	144994696	G	T	144994696	3	4	67	1	0	0	0	0	1	0	0	0	12052	1203	42	3	4354	3	PLEC	8	144994696	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	120801665	144994696	1369326	61	9219											
IFNA2	3440	ucsc.edu;bcgsc.ca	37	9	21385252	21385252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IFNA2	NM_000605	exon1	c.T77C	p.L26P	TGAGGCAGATCAC	.	42	4	159	0	.	153	G	21385252	A	G	21385252	3	3	67	1	0	0	0	0	1	0	0	0	7537	188	7	2	493	2	IFNA2	9	21385252	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10		21385252	119828179	62	9220											
GALT	2592	ucsc.edu;bcgsc.ca	37	9	34649406	34649406	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GALT	NM_000155	exon10	c.905-1G>T	.	CTGTCAGGGGCTC	.	42	4	62	0	.	90	T	34649406	G	T	34649406	5	4	67	1	0	0	0	0	0	0	1	0	6230	1014	35	3	942	3	GALT	9	34649406	Splice_Site	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	13264154	34649406	106564025	63	9221											
GRIN3A	116443	ucsc.edu;bcgsc.ca	37	9	104433345	104433345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GRIN3A	NM_133445	exon3	c.G1349T	p.R450I	TTTACTCTGATGG	.	43	4	185	0	.	96	A	104433345	C	A	104433345	3	1	67	1	0	0	0	0	1	0	0	0	6783	913	32	3	2026	3	GRIN3A	9	104433345	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	69783939	104433345	36780086	64	9222											
SMC2	10592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	106894408	106894408	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SMC2	NM_001042551	exon22	c.3108+2T>G	.	AAAAGGTACTTTT	.	287	123	503	0	.	210	G	106894408	T	G	106894408	5	3	67	1	0	0	0	0	0	0	1	0	14783	1652	57	5	3192	5	SMC2	9	106894408	Splice_Site	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	2461063	106894408	34319023	65	9223											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140953173	140953173	+	Silent	SNP	G	G	C	rs199714779	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CACNA1B	NM_001243812	exon29	c.G4461C	p.V1487V	TGTGGTGCTGATG	.	107	38	96	0	.	138	C	140953173	G	C	140953173	2	2	67	1	0	0	0	0	0	0	0	1	2539	1306	46	4		4	CACNA1B	9	140953173	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	34058765	140953173	260258	66	9224											
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25883311	25883311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GPR158	NM_020752	exon9	c.G1983T	p.L661F	TGGGTTGCTTTTG	.	79	17	141	2	.	141	T	25883311	G	T	25883311	3	4	67	1	0	0	0	0	1	0	0	0	6663	1310	46	3	2017	3	GPR158	10	25883311	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10		25883311	109651436	67	9225											
ASAH2	56624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52005051	52005051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ASAH2	NM_001143974	exon2	c.G291T	p.Q97H	GAAGTTCTGAAAT	.	339	178	361	0	.	90	A	52005051	C	A	52005051	3	1	67	1	0	0	0	0	1	0	0	0	1007	912	32	3	2127	3	ASAH2	10	52005051	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	26121740	52005051	83529696	68	9226											
TET1	80312	broad.mit.edu;bcgsc.ca	37	10	70332547	70332547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TET1	NM_030625	exon2	c.A452G	p.K151R	GAGTAAAGCACTC	.	83	6	108	0	.	663	G	70332547	A	G	70332547	3	3	67	1	0	0	0	0	1	0	0	0	15766	72	3	2	454	2	TET1	10	70332547	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	18327496	70332547	65202200	69	9227											
IFIT3	3437	ucsc.edu;bcgsc.ca	37	10	91099876	91099876	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IFIT3	NM_001549	exon2	c.A1464G	p.Q488Q	AGAGCAACTGAAC	.	37	4	74	0	.	90	G	91099876	A	G	91099876	2	3	67	1	0	0	0	0	0	0	0	1	7524	40	2	2		2	IFIT3	10	91099876	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	20767329	91099876	44434871	70	9228											
FBXW4	6468	broad.mit.edu;bcgsc.ca	37	10	103371084	103371084	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	FBXW4	NM_022039	exon9	c.T1203C	p.S401S	GTTGTAAGACAGG	.	117	7	155	0	.	226	G	103371084	A	G	103371084	2	3	67	1	0	0	0	0	0	0	0	1	5767	59	3	2		2	FBXW4	10	103371084	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	12271208	103371084	32163663	71	9229											
KCNIP2	30819	ucsc.edu;bcgsc.ca	37	10	103588929	103588929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KCNIP2	NM_014591	exon4	c.C296A	p.S99Y	ACGGTGGACAATT	.	32	4	43	0	.	90	T	103588929	G	T	103588929	3	4	67	1	0	0	0	0	1	0	0	0	8040	1174	41	3	657	3	KCNIP2	10	103588929	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	217845	103588929	31945818	72	9230											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6643329	6643329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DCHS1	NM_003737	exon21	c.G9578T	p.C3193F	GGGGGACATGGCC	.	86	30	112	0	.	73	A	6643329	C	A	6643329	3	1	67	1	0	0	0	0	1	0	0	0	4287	478	17	3	322	3	DCHS1	11	6643329	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		6643329	128363187	73	9231											
MYOD1	4654	broad.mit.edu;mdanderson.org	37	11	17741511	17741511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MYOD1	NM_002478	exon1	c.A182G	p.E61G	CCGAAGAGCACTC	.	26	11	29	0	.	154	G	17741511	A	G	17741511	3	3	67	1	0	0	0	0	1	0	0	0	10088	304	11	2	184	2	MYOD1	11	17741511	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	11098182	17741511	117265005	74	9232											
PACSIN3	29763	ucsc.edu;bcgsc.ca	37	11	47200816	47200816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PACSIN3	NM_016223	exon8	c.A794G	p.H265R	TCACGGTGGAGTT	.	47	4	62	0	.	68	C	47200816	T	C	47200816	3	2	67	1	0	0	0	0	1	0	0	0	11376	1696	59	2	496	2	PACSIN3	11	47200816	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	29459305	47200816	87805700	75	9233											
OR5D14	219436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55563794	55563795	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	.	.	.	p.G255L	TTCCATGGGACCA	.	123	53	289	0	.	.	TT	55563795	GG	TT	55563794	3	4	67	1	0	0	0	0	1	0	0	0	11155	1348	47	3	765	3	OR5D14	11	55563794	Missense_Mutation	DNP	GG	TCGA-DD-A1EL-01A-11D-A152-10	8362978	55563794	79442722	76	9234											
VWCE	220001	broad.mit.edu;bcgsc.ca	37	11	61040788	61040788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	VWCE	NM_152718	exon13	c.A1582G	p.N528D	CCCCATTCTGGAA	.	126	7	170	0	.	91	C	61040788	T	C	61040788	3	2	67	1	0	0	0	0	1	0	0	0	17242	1797	62	2	1317	2	VWCE	11	61040788	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	5476994	61040788	73965728	77	9235											
ESRRA	2101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64082291	64082291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ESRRA	NM_004451	exon5	c.G650T	p.G217V	CCGCAGGCCCTGA	.	60	31	59	0	.	90	T	64082291	G	T	64082291	3	4	67	1	0	0	0	0	1	0	0	0	5260	1203	42	3	664	3	ESRRA	11	64082291	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	3041503	64082291	70924225	78	9236											
RNASEH2C	84153	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65488115	65488115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RNASEH2C	NM_032193	exon1	c.G115C	p.D39H	GCCCGTCCACCGC	.	19	9	24	0	.	90	G	65488115	C	G	65488115	3	3	67	1	0	0	0	0	1	0	0	0	13414	855	30	4	395	4	RNASEH2C	11	65488115	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	1405824	65488115	69518401	79	9237											
LRFN4	78999	ucsc.edu;bcgsc.ca	37	11	66625840	66625840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRFN4	NM_024036	exon1	c.G625A	p.A209T	ACGCTGGCTCCGG	.	61	6	33	0	.	90	A	66625840	G	A	66625840	3	1	67	1	0	0	0	0	1	0	0	0	8940	1203	42	3	627	3	LRFN4	11	66625840	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	1137725	66625840	68380676	80	9238											
C11orf65	160140	broad.mit.edu;bcgsc.ca	37	11	108253793	108253793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C11orf65	NM_152587	exon9	c.A897G	p.E299E	ATTTGGTTCTTGA	.	232	12	260	1	.	91	C	108253793	T	C	108253793	2	2	67	1	0	0	0	0	0	0	0	1	1655	1722	60	2		2	C11orf65	11	108253793	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	41627953	108253793	26752723	81	9239											
C12orf4	57102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4609389	4609389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C12orf4	NM_020374	exon11	c.G1355T	p.G452V	CGGAGTCCCATAA	.	137	48	210	1	.	226	A	4609389	C	A	4609389	3	1	67	1	0	0	0	0	1	0	0	0	1685	855	30	3	319	3	C12orf4	12	4609389	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		4609389	129242506	82	9240											
GRIN2B	2904	ucsc.edu;bcgsc.ca	37	12	13906561	13906561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GRIN2B	NM_000834	exon3	c.A700G	p.K234E	CTTCCTTGGTACA	.	43	4	80	0	.	231	C	13906561	T	C	13906561	3	2	67	1	0	0	0	0	1	0	0	0	6780	1821	63	2	3798	2	GRIN2B	12	13906561	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	9297172	13906561	119945334	83	9241											
LRMP	4033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25254117	25254117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRMP	NM_001204126	exon14	c.C747A	p.S249R	GGAAAGCCGGGTT	.	50	10	85	0	.	228	A	25254117	C	A	25254117	3	1	67	1	0	0	0	0	1	0	0	0	8950	738	26	3	789	3	LRMP	12	25254117	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	11347556	25254117	108597778	84	9242											
SLC2A13	114134	ucsc.edu;bcgsc.ca	37	12	40158661	40158661	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC2A13	NM_052885	exon9	c.1446-1G>T	.	TCACACCTGAAAA	.	32	4	126	0	.	515	A	40158661	C	A	40158661	5	1	67	1	0	0	0	0	0	0	1	0	14542	695	24	3	513	3	SLC2A13	12	40158661	Splice_Site	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	14904544	40158661	93693234	85	9243											
TENC1	23371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53446269	53446269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TENC1	NM_015319	exon3	c.A245T	p.E82V	AATGTGAAGCAAA	.	111	43	100	0	.	92	T	53446269	A	T	53446269	3	4	67	1	0	0	0	0	1	0	0	0	15755	246	9	4	334	4	TENC1	12	53446269	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	13287608	53446269	80405626	86	9244											
MMP19	4327	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56235006	56235006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MMP19	NM_001272101	exon3	c.C188A	p.A63E	TCAGATGCTTCCT	.	25	8	30	0	.	227	T	56235006	G	T	56235006	3	4	67	1	0	0	0	0	1	0	0	0	9657	1319	46	3	1366	3	MMP19	12	56235006	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2788737	56235006	77616889	87	9245											
SHMT2	6472	ucsc.edu;bcgsc.ca	37	12	57626600	57626600	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SHMT2	NM_005412	exon7	c.T831C	p.T277T	CACCACTACTCAC	.	42	4	53	0	.	91	C	57626600	T	C	57626600	2	2	67	1	0	0	0	0	0	0	0	1	14286	1509	53	2		2	SHMT2	12	57626600	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	1391594	57626600	76225295	88	9246											
AVPR1A	552	ucsc.edu;bcgsc.ca	37	12	63544149	63544149	+	Silent	SNP	C	C	T	rs138241660	byfrequency	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AVPR1A	NM_000706	exon1	c.G468A	p.P156P	CTTGAGCGGGTGG	.	39	4	63	0	C|1.000;T|0.000	946	T	63544149	C	T	63544149	2	4	67	1	0	0	0	0	0	0	0	1	1231	755	27	1		1	AVPR1A	12	63544149	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	5917549	63544149	70307746	89	9247											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81746949	81746949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PPFIA2	NM_001220476	exon16	c.C1943A	p.T648K	GCTAGCGTCTGGG	.	116	52	198	0	.	231	T	81746949	G	T	81746949	3	4	67	1	0	0	0	0	1	0	0	0	12310	1145	40	1	1894	1	PPFIA2	12	81746949	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	18202800	81746949	52104946	90	9248											
KDM2B	84678	ucsc.edu;bcgsc.ca	37	12	121947800	121947800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KDM2B	NM_032590	exon11	c.C1217A	p.S406Y	AGCCAGGAATCCG	.	39	4	67	0	.	638	T	121947800	G	T	121947800	3	4	67	1	0	0	0	0	1	0	0	0	8125	1174	41	3	2897	3	KDM2B	12	121947800	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	40200851	121947800	11904095	91	9249											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124305198	124305198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH10	NM_207437	exon23	c.G3718T	p.A1240S	GCTAACGCTGAGA	.	133	66	155	0	.	95	T	124305198	G	T	124305198	3	4	67	1	0	0	0	0	1	0	0	0	4598	1087	38	1	3808	1	DNAH10	12	124305198	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2357398	124305198	9546697	92	9250											
DNAH10	196385	broad.mit.edu;bcgsc.ca	37	12	124395185	124395185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH10	NM_207437	exon58	c.A9746G	p.D3249G	ACTGTGATGTTTT	.	96	8	88	0	.	95	G	124395185	A	G	124395185	3	3	67	1	0	0	0	0	1	0	0	0	4598	333	12	2	9976	2	DNAH10	12	124395185	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	89987	124395185	9456710	93	9251											
PCDH17	27253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58240890	58240890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCDH17	NM_001040429	exon3	c.G2720A	p.G907D	ACAAAGGCTCCTG	.	65	25	167	1	.	97	A	58240890	G	A	58240890	3	1	67	1	0	0	0	0	1	0	0	0	11512	1203	42	3	2730	3	PCDH17	13	58240890	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10		58240890	56928988	94	9252											
GPR180	160897	broad.mit.edu;bcgsc.ca	37	13	95257737	95257737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GPR180	NM_180989	exon2	c.C238A	p.L80I	GAATGGCTAAAGC	.	298	14	208	0	.	153	A	95257737	C	A	95257737	3	1	67	1	0	0	0	0	1	0	0	0	6676	796	28	3	244	3	GPR180	13	95257737	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	37016847	95257737	19912141	95	9253											
MYH7	4625	ucsc.edu;bcgsc.ca	37	14	23894544	23894544	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MYH7	NM_000257	exon21	c.C2370A	p.A790A	GGACTGGGCCTGG	.	45	5	105	0	.	94	T	23894544	G	T	23894544	2	4	67	1	0	0	0	0	0	0	0	1	10039	1219	43	3		3	MYH7	14	23894544	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10		23894544	83454996	96	9254											
SPTBN5	51332	ucsc.edu;bcgsc.ca	37	15	42152870	42152870	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SPTBN5	NM_016642	exon47	c.T7797C	p.A2599A	CTCCAGAGCACTG	.	40	4	67	0	.	91	G	42152870	A	G	42152870	2	3	67	1	0	0	0	0	0	0	0	1	15121	291	11	2		2	SPTBN5	15	42152870	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10		42152870	60378522	97	9255											
SLC12A1	6557	ucsc.edu;bcgsc.ca	37	15	48593511	48593511	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC12A1	NM_001184832	exon26	c.3097-1G>T	.	CCCACAGAGTTAC	.	58	5	80	0	.	24	T	48593511	G	T	48593511	5	4	67	1	0	0	0	0	0	0	1	0	14382	956	33	3	3294	3	SLC12A1	15	48593511	Splice_Site	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	6440641	48593511	53937881	98	9256											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51791589	51791589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DMXL2	NM_001174116	exon18	c.G3832C	p.V1278L	ATTTGACAGCATG	.	86	51	140	0	.	99	G	51791589	C	G	51791589	3	3	67	1	0	0	0	0	1	0	0	0	4595	478	17	4	5385	4	DMXL2	15	51791589	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	3198078	51791589	50739803	99	9257											
PLEKHO2	80301	ucsc.edu;bcgsc.ca	37	15	65157960	65157960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PLEKHO2	NM_025201	exon6	c.A1346G	p.E449G	CTGTGGAGCAGCT	.	40	4	74	0	.	92	G	65157960	A	G	65157960	3	3	67	1	0	0	0	0	1	0	0	0	12085	304	11	2	1368	2	PLEKHO2	15	65157960	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	13366371	65157960	37373432	100	9258											
STOML1	9399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74277722	74277722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	STOML1	NM_001256672	exon5	c.G727T	p.A243S	GCAGGGCCAGCTG	.	38	10	94	0	.	91	A	74277722	C	A	74277722	3	1	67	1	0	0	0	0	1	0	0	0	15312	739	26	3	481	3	STOML1	15	74277722	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	9119762	74277722	28253670	101	9259											
AP3B2	8120	ucsc.edu;bcgsc.ca	37	15	83346874	83346874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AP3B2	NM_004644	exon11	c.G1228A	p.V410I	GTAGGACAGTAGG	.	28	4	55	0	.	94	T	83346874	C	T	83346874	3	4	67	1	0	0	0	0	1	0	0	0	745	478	17	3	2084	3	AP3B2	15	83346874	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	9069152	83346874	19184518	102	9260											
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86124813	86124813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AKAP13	NM_007200	exon7	c.G3514T	p.G1172C	ACCATGGGTGACG	.	34	4	55	0	.	258	T	86124813	G	T	86124813	3	4	67	1	0	0	0	0	1	0	0	0	449	1232	43	3	3536	3	AKAP13	15	86124813	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2777939	86124813	16406579	103	9261											
IDH2	3418	ucsc.edu;bcgsc.ca	37	15	90628327	90628327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IDH2	NM_002168	exon9	c.C1084T	p.R362W	TGGGCCGGCCCTG	.	28	4	58	0	.	15118	A	90628327	G	A	90628327	3	1	67	1	0	0	0	0	1	0	0	0	7495	1115	39	1	286	1	IDH2	15	90628327	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	4503514	90628327	11903065	104	9262											
TTC23	64927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99759189	99759189	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TTC23	NM_001040657	exon5	c.G369T	p.V123V	GGGAGGCACAATG	.	166	98	382	0	.	90	A	99759189	C	A	99759189	2	1	67	1	0	0	0	0	0	0	0	1	16687	697	25	3		3	TTC23	15	99759189	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	9130862	99759189	2772203	105	9263											
SNRPA1	6627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101827889	101827889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SNRPA1	NM_003090	exon4	c.G328T	p.A110S	GAGATGCCAGAGG	.	99	66	196	1	.	226	A	101827889	C	A	101827889	3	1	67	1	0	0	0	0	1	0	0	0	14860	739	26	3	463	3	SNRPA1	15	101827889	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	2068700	101827889	703503	106	9264											
IL21R	50615	broad.mit.edu;bcgsc.ca	37	16	27454318	27454318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IL21R	NM_181079	exon6	c.T454C	p.F152L	GTGACCTTCTCAG	.	129	8	178	1	.	660	C	27454318	T	C	27454318	3	2	67	1	0	0	0	0	1	0	0	0	7671	1609	56	2	402	2	IL21R	16	27454318	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10		27454318	62900435	107	9265											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671299	49671299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ZNF423	NM_015069	exon4	c.C1764A	p.H588Q	GTTCTTGTGGTTC	.	447	160	517	0	.	228	T	49671299	G	T	49671299	3	4	67	1	0	0	0	0	1	0	0	0	17895	1368	48	3	2110	3	ZNF423	16	49671299	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	22216981	49671299	40683454	108	9266											
ST3GAL2	6483	ucsc.edu;bcgsc.ca	37	16	70432284	70432284	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ST3GAL2	NM_006927	exon2	c.G150A	p.L50L	GGGCACCAGCTTC	.	39	4	43	0	.	91	T	70432284	C	T	70432284	2	4	67	1	0	0	0	0	0	0	0	1	15214	581	21	3		3	ST3GAL2	16	70432284	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	20760985	70432284	19922469	109	9267											
GSG2	83903	ucsc.edu;bcgsc.ca	37	17	3627867	3627867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GSG2	NM_031965	exon1	c.A638G	p.D213G	CCCTGGACCGAGC	.	53	6	104	0	.	297	G	3627867	A	G	3627867	3	3	67	1	0	0	0	0	1	0	0	0	6822	275	10	2	640	2	GSG2	17	3627867	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10		3627867	77567343	110	9268											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578449	7578449	+	Missense_Mutation	SNP	C	C	A	rs193920817	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G481T	p.A161S	AGATGGCCATGGC	.	56	36	98	0	.	70225	A	7578449	C	A	7578449	3	1	67	1	0	0	0	0	1	0	0	0	16378	739	26	3	817	3	TP53	17	7578449	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	3950582	7578449	73616761	111	9269											
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11535903	11535903	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH9	NM_001372	exon8	c.1519-1G>T	.	TCTTCAGGACTTT	.	42	4	85	0	.	168	T	11535903	G	T	11535903	5	4	67	1	0	0	0	0	0	0	1	0	4608	1014	35	3	1548	3	DNAH9	17	11535903	Splice_Site	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	3957454	11535903	69659307	112	9270											
FLOT2	2319	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27210165	27210165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	FLOT2	NM_004475	exon4	c.G307A	p.V103I	GCAGGACGACGTT	.	54	28	50	1	.	522	T	27210165	C	T	27210165	3	4	67	1	0	0	0	0	1	0	0	0	5937	536	19	1	1011	1	FLOT2	17	27210165	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	15674262	27210165	53985045	113	9271											
PCGF2	7703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36891702	36891702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCGF2	NM_007144	exon11	c.C809T	p.P270L	GTGGCTGGCAGGG	.	111	52	148	0	.	658	A	36891702	G	A	36891702	3	1	67	1	0	0	0	0	1	0	0	0	11575	1348	47	3	229	3	PCGF2	17	36891702	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	9681537	36891702	44303508	114	9272											
KRTAP3-3	85293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39150290	39150290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_033185	exon1	c.C60A	p.C20X	AGAGGAGCAGATG	.	248	90	350	0	.	.	T	39150290	G	T	39150290	4	4	67	1	0	0	0	0	0	1	0	0	8547	963	34	3	240	3	KRTAP3-3	17	39150290	Nonsense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2258588	39150290	42044920	115	9273											
ATP6V0A1	535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40652840	40652840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ATP6V0A1	NM_001130020	exon16	c.G1816T	p.A606S	TATGATGCTCATA	.	717	273	772	0	.	91	T	40652840	G	T	40652840	3	4	67	1	0	0	0	0	1	0	0	0	1168	1319	46	3	1874	3	ATP6V0A1	17	40652840	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	1502550	40652840	40542370	116	9274											
RUNDC1	146923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41143400	41143400	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RUNDC1	NM_173079	exon5	c.T1509A	p.P503P	CCTTCCTGTTACG	.	106	36	122	0	.	90	A	41143400	T	A	41143400	2	1	67	1	0	0	0	0	0	0	0	1	13742	1567	55	4		4	RUNDC1	17	41143400	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	490560	41143400	40051810	117	9275											
NAGS	162417	ucsc.edu;bcgsc.ca	37	17	42084822	42084822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	NAGS	NM_153006	exon5	c.T1228C	p.S410P	CTGGCCTCGCTGC	.	38	5	32	0	.	90	C	42084822	T	C	42084822	3	2	67	1	0	0	0	0	1	0	0	0	10145	1551	54	2	1246	2	NAGS	17	42084822	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	941422	42084822	39110388	118	9276											
UBTF	7343	ucsc.edu;bcgsc.ca	37	17	42287773	42287773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	UBTF	NM_014233	exon14	c.G1428T	p.E476D	CCGTTCCTCGCGC	.	48	4	69	0	.	90	A	42287773	C	A	42287773	3	1	67	1	0	0	0	0	1	0	0	0	16906	680	24	3	898	3	UBTF	17	42287773	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	202951	42287773	38907437	119	9277											
CCDC43	124808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42756228	42756228	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_144609	exon5	c.G671C	p.R224P	GGTTATCGCTTTC	.	400	157	465	0	.	.	G	42756228	C	G	42756228	3	3	67	1	0	0	0	0	1	0	0	0	2815	884	31	4	7	4	CCDC43	17	42756228	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	468455	42756228	38438982	120	9278											
HEXIM2	124790	ucsc.edu;bcgsc.ca	37	17	43240204	43240204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	HEXIM2	NM_144608	exon3	c.C44A	p.P15Q	AGTCACCAGTGGC	.	36	4	34	0	.	90	A	43240204	C	A	43240204	3	1	67	1	0	0	0	0	1	0	0	0	7077	594	21	3	46	3	HEXIM2	17	43240204	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	483976	43240204	37955006	121	9279											
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45925714	45925714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SP6	NM_001258248	exon2	c.C82A	p.P28T	GGAGAGGCTGCAG	.	52	21	42	0	.	91	T	45925714	G	T	45925714	3	4	67	1	0	0	0	0	1	0	0	0	14968	1203	42	3	1052	3	SP6	17	45925714	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2685510	45925714	35269496	122	9280											
CSH1	1442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61972411	61972411	+	Missense_Mutation	SNP	G	G	T	rs61764004		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CSH1	NM_001317	exon5	c.C625A	p.R209S	CAGAGCGGCACTG	.	185	85	270	0	G|0.993;T|0.007	92	T	61972411	G	T	61972411	3	4	67	1	0	0	0	0	1	0	0	0	3940	1116	39	1	32	1	CSH1	17	61972411	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	16046697	61972411	19222799	123	9281											
AZI1	22994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79172746	79172746	+	Silent	SNP	G	G	A	rs112371137	byfrequency	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AZI1	NM_014984	exon11	c.C1218T	p.P406P	GTCTCCGGGGCCT	.	58	20	59	1	G|0.989;A|0.011	136	A	79172746	G	A	79172746	2	1	67	1	0	0	0	0	0	0	0	1	1240	1103	39	1		1	AZI1	17	79172746	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	17200335	79172746	2022464	124	9282											
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79864760	79864760	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCYT2	NM_001184917	exon8	c.G606T	p.R202R	GGGGTTCCGCCCA	.	69	31	53	0	.	68	A	79864760	C	A	79864760	2	1	67	1	0	0	0	0	0	0	0	1	11612	842	30	3		3	PCYT2	17	79864760	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	692014	79864760	1330450	125	9283											
ZNF521	25925	ucsc.edu;bcgsc.ca	37	18	22775197	22775197	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ZNF521	NM_015461	exon5	c.T3585C	p.Y1195Y	GCATTGATAGGTC	.	33	4	121	0	.	275	G	22775197	A	G	22775197	2	3	67	1	0	0	0	0	0	0	0	1	17962	340	12	2		2	ZNF521	18	22775197	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10		22775197	55302051	126	9284											
KATNAL2	83473	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44625671	44625671	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KATNAL2	NM_031303	exon13	c.C1053A	p.P351P	TCTCCCCAGCCGG	.	99	12	124	0	.	93	A	44625671	C	A	44625671	2	1	67	1	0	0	0	0	0	0	0	1	7986	581	21	3		3	KATNAL2	18	44625671	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	21850474	44625671	33451577	127	9285											
LRG1	116844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4538450	4538450	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRG1	NM_052972	exon2	c.G546T	p.G182G	CAGCAGCCCGGGG	.	24	16	40	0	.	91	A	4538450	C	A	4538450	2	1	67	1	0	0	0	0	0	0	0	1	8942	726	26	3		3	LRG1	19	4538450	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		4538450	54590533	128	9286											
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8186181	8186181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	FBN3	NM_032447	exon24	c.G3172T	p.G1058C	CGTAGCCGGGAAA	.	75	42	137	0	.	100	A	8186181	C	A	8186181	3	1	67	1	0	0	0	0	1	0	0	0	5704	652	23	1	5417	1	FBN3	19	8186181	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	3647731	8186181	50942802	129	9287											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602767	10602767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KEAP1	NM_012289	exon3	c.G811T	p.V271L	AGCGCACGGCCCG	.	45	35	68	0	.	637	A	10602767	C	A	10602767	3	1	67	1	0	0	0	0	1	0	0	0	8141	536	19	1	1079	1	KEAP1	19	10602767	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	2416586	10602767	48526216	130	9288											
DOCK6	57572	ucsc.edu;bcgsc.ca	37	19	11363499	11363499	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DOCK6	NM_020812	exon3	c.C268A	p.R90R	ATTCCCGGGGCTG	.	50	4	114	0	.	93	T	11363499	G	T	11363499	2	4	67	1	0	0	0	0	0	0	0	1	4691	1115	39	1		1	DOCK6	19	11363499	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	760732	11363499	47765484	131	9289											
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35556780	35556780	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	HPN	NM_182983	exon12	c.C1059T	p.S353S	CGACAGCGGTGGT	.	111	53	105	0	.	515	T	35556780	C	T	35556780	2	4	67	1	0	0	0	0	0	0	0	1	7336	767	27	1		1	HPN	19	35556780	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	24193281	35556780	23572203	132	9290											
GAPDHS	26330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36033250	36033250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GAPDHS	NM_014364	exon5	c.C479A	p.A160D	GGAGGGCTGTCGG	.	64	29	76	0	.	226	A	36033250	C	A	36033250	3	1	67	1	0	0	0	0	1	0	0	0	6237	797	28	3	497	3	GAPDHS	19	36033250	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	476470	36033250	23095733	133	9291											
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36340537	36340537	+	Silent	SNP	T	T	A	rs111277506	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	NPHS1	NM_004646	exon6	c.A627T	p.S209S	ATTATCTGAGCTC	.	59	17	72	0	T|0.500;C|0.500	49	A	36340537	T	A	36340537	2	1	67	1	0	0	0	0	0	0	0	1	10582	1567	55	4		4	NPHS1	19	36340537	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	307287	36340537	22788446	134	9292											
LGALS7B	653499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39281329	39281329	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_001042507	exon3	c.G96C	p.R32S	TTCCAGGTTCCAT	.	174	15	205	0	.	.	C	39281329	G	C	39281329	3	2	67	1	0	0	0	0	1	0	0	0	8746	1275	44	4	106	4	LGALS7B	19	39281329	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2940792	39281329	19847654	135	9293											
SYCN	342898	ucsc.edu;bcgsc.ca	37	19	39694627	39694627	+	Missense_Mutation	SNP	C	C	T	rs201454210		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SYCN	NM_001080468	exon1	c.G268A	p.V90M	ACCACACGGTGAG	.	46	4	52	0	.	68	T	39694627	C	T	39694627	3	4	67	1	0	0	0	0	1	0	0	0	15427	536	19	1	144	1	SYCN	19	39694627	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	413298	39694627	19434356	136	9294											
ATP5SL	55101	ucsc.edu;bcgsc.ca	37	19	41939217	41939217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ATP5SL	NM_001167867	exon5	c.C574A	p.R192S	AGATGCGGGGGCA	.	42	4	52	0	.	135	T	41939217	G	T	41939217	3	4	67	1	0	0	0	0	1	0	0	0	1164	1116	39	1	225	1	ATP5SL	19	41939217	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2244590	41939217	17189766	137	9295											
PRR19	284338	ucsc.edu;bcgsc.ca	37	19	42814120	42814120	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PRR19	NM_199285	exon2	c.T384C	p.P128P	GGTGCCTGGAGGT	.	35	4	46	1	.	68	C	42814120	T	C	42814120	2	2	67	1	0	0	0	0	0	0	0	1	12591	1567	55	2		2	PRR19	19	42814120	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	874903	42814120	16314863	138	9296											
IRGQ	126298	ucsc.edu;bcgsc.ca	37	19	44099395	44099395	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IRGQ	NM_001007561	exon2	c.G96A	p.V32V	CGTCTCCACATCC	.	45	4	42	0	.	92	T	44099395	C	T	44099395	2	4	67	1	0	0	0	0	0	0	0	1	7839	581	21	3		3	IRGQ	19	44099395	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	1285275	44099395	15029588	139	9297											
ZNF234	10780	ucsc.edu;bcgsc.ca	37	19	44661487	44661487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_006630	exon6	c.A1318G	p.S440G	CGTCAGAGTTCAT	.	41	4	73	0	.	.	G	44661487	A	G	44661487	3	3	67	1	0	0	0	0	1	0	0	0	17784	304	11	2	1332	2	ZNF234	19	44661487	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10	562092	44661487	14467496	140	9298											
CD3EAP	10849	ucsc.edu;bcgsc.ca	37	19	45911586	45911586	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CD3EAP	NM_012099	exon3	c.T360C	p.G120G	TGAGGGTCCCCAG	.	56	6	48	0	.	156	C	45911586	T	C	45911586	2	2	67	1	0	0	0	0	0	0	0	1	3012	1654	58	2		2	CD3EAP	19	45911586	Silent	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	1250099	45911586	13217397	141	9299											
GLTSCR2	29997	ucsc.edu;bcgsc.ca	37	19	48255773	48255773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GLTSCR2	NM_015710	exon6	c.C674T	p.P225L	AGCGGCCAGCACG	.	36	4	36	0	.	514	T	48255773	C	T	48255773	3	4	67	1	0	0	0	0	1	0	0	0	6475	594	21	3	696	3	GLTSCR2	19	48255773	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	2344187	48255773	10873210	142	9300											
SIGLEC7	27036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51645632	51645632	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SIGLEC7	NM_016543	exon1	c.G6A	p.L2L	TATGCTGCTGCTG	.	31	14	43	0	.	153	A	51645632	G	A	51645632	2	1	67	1	0	0	0	0	0	0	0	1	14313	1306	46	3		3	SIGLEC7	19	51645632	Silent	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	3389859	51645632	7483351	143	9301											
CEACAM18	729767	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51984902	51984902	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CEACAM18	NM_001080405	exon4	c.T839G	p.I280S	AACGCATCTCTCT	.	99	32	91	0	.	23	G	51984902	T	G	51984902	3	3	67	1	0	0	0	0	1	0	0	0	3189	1435	50	5	853	5	CEACAM18	19	51984902	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	339270	51984902	7144081	144	9302											
C20orf111	51526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42826208	42826208	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C20orf111	NM_016470	exon4	c.G363T	p.L121L	AATTCCCAGCCCA	.	102	38	108	0	.	90	A	42826208	C	A	42826208	2	1	67	1	0	0	0	0	0	0	0	1	2080	581	21	3		3	C20orf111	20	42826208	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		42826208	20199312	145	9303											
TAF4	6874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60578221	60578221	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TAF4	NM_003185	exon9	c.G2481T	p.S827S	CCGAAACGAACCT	.	103	46	105	0	.	93	A	60578221	C	A	60578221	2	1	67	1	0	0	0	0	0	0	0	1	15523	523	19	1		1	TAF4	20	60578221	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	17752013	60578221	2447299	146	9304											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	61981117	61981117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CHRNA4	NM_000744	exon5	c.G1646C	p.R549P	GTGCTGCGGGTCT	.	30	15	43	0	.	91	G	61981117	C	G	61981117	3	3	67	1	0	0	0	0	1	0	0	0	3385	768	27	4	245	4	CHRNA4	20	61981117	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	1402896	61981117	1044403	147	9305											
ZNF512B	57473	ucsc.edu;bcgsc.ca	37	20	62592677	62592677	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ZNF512B	NM_020713	exon16	c.G2412T	p.L804L	GGTCTTCAGGATG	.	33	4	46	0	.	90	A	62592677	C	A	62592677	2	1	67	1	0	0	0	0	0	0	0	1	17954	813	29	3		3	ZNF512B	20	62592677	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	611560	62592677	432843	148	9306											
SLC37A1	54020	ucsc.edu;bcgsc.ca	37	21	43954849	43954849	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC37A1	NM_018964	exon5	c.C180T	p.D60D	AGCTGACGTCAGG	.	47	4	74	0	.	90	T	43954849	C	T	43954849	2	4	67	1	0	0	0	0	0	0	0	1	14597	535	19	1		1	SLC37A1	21	43954849	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10		43954849	4175046	149	9307											
KRTAP10-1	386677	ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45959880	45959880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KRTAP10-1	NM_198691	exon1	c.C154A	p.R52S	ACACACGGCTCAC	.	46	28	56	0	.	91	T	45959880	G	T	45959880	3	4	67	1	0	0	0	0	1	0	0	0	8505	1116	39	1	698	1	KRTAP10-1	21	45959880	Missense_Mutation	SNP	G	TCGA-DD-A1EL-01A-11D-A152-10	2005031	45959880	2170015	150	9308											
COL18A1	80781	ucsc.edu;bcgsc.ca	37	21	46888235	46888235	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COL18A1	NM_030582	exon2	c.C726A	p.P242P	TGACCCCGACGTC	.	38	4	73	0	.	90	A	46888235	C	A	46888235	2	1	67	1	0	0	0	0	0	0	0	1	3675	639	23	1		1	COL18A1	21	46888235	Silent	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	928355	46888235	1241660	151	9309											
IL17RA	23765	ucsc.edu;bcgsc.ca	37	22	17585699	17585699	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IL17RA	NM_014339	exon9	c.A930G	p.P310P	CACTCCAGGTAGG	.	38	4	40	1	.	92	G	17585699	A	G	17585699	2	3	67	1	0	0	0	0	0	0	0	1	7639	202	7	2		2	IL17RA	22	17585699	Silent	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10		17585699	33718867	152	9310											
MAGEB18	286514	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	26157602	26157602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MAGEB18	NM_173699	exon2	c.T500A	p.V167E	AGGAAGTGGATCC	.	90	81	85	2	.	130	A	26157602	T	A	26157602	3	1	67	1	0	0	0	0	1	0	0	0	9175	1696	59	4	502	4	MAGEB18	23	26157602	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10		26157602	129112958	153	9311											
PHF8	23133	ucsc.edu;bcgsc.ca	37	X	54022184	54022184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PHF8	NM_001184896	exon12	c.A1373G	p.E458G	ACTGTCTCCGGGA	.	40	5	43	0	.	133	C	54022184	T	C	54022184	3	2	67	1	0	0	0	0	1	0	0	0	11840	1551	54	2	2023	2	PHF8	23	54022184	Missense_Mutation	SNP	T	TCGA-DD-A1EL-01A-11D-A152-10	27864582	54022184	101248376	154	9312											
SASH3	54440	ucsc.edu;bcgsc.ca	37	X	128926328	128926328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SASH3	NM_018990	exon5	c.C467A	p.P156Q	CCAGCCCAGGTTC	.	42	4	41	0	.	133	A	128926328	C	A	128926328	3	1	67	1	0	0	0	0	1	0	0	0	13849	594	21	3	485	3	SASH3	23	128926328	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	74904144	128926328	26344232	155	9313											
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135757211	135757211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ARHGEF6	NM_004840	exon19	c.G1990C	p.E664Q	AGGCTTCGATCAC	.	118	100	126	1	.	227	G	135757211	C	G	135757211	3	3	67	1	0	0	0	0	1	0	0	0	910	893	31	4	356	4	ARHGEF6	23	135757211	Missense_Mutation	SNP	C	TCGA-DD-A1EL-01A-11D-A152-10	6830883	135757211	19513349	156	9314											
RPS4Y1	6192	broad.mit.edu;bcgsc.ca	37	Y	2722744	2722744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RPS4Y1	NM_001008	exon5	c.A464G	p.K155R	TCATCAAGGTGAA	.	49	6	376	0	.	424	G	2722744	A	G	2722744	3	3	67	1	0	0	0	0	1	0	0	0	13646	72	3	2	482	2	RPS4Y1	24	2722744	Missense_Mutation	SNP	A	TCGA-DD-A1EL-01A-11D-A152-10		2722744	56650822	157	9315											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27105581	27105582	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARID1A	NM_006015	exon20	c.5192_5193insA	p.L1731fs	GCATTTTAAAGGA	.	97	53	222	0	.	584	A	27105582	-	A	27105581	7	5	68	1	0	1	1	0	0	0	0	0	913	1764	61	0	5270	0	ARID1A	1	27105581	Frame_Shift_Ins	INS	-	TCGA-DD-A39V-01A-11D-A20W-10		27105581	222145040	1	9316											
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	55340777	55340777	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DHCR24	NM_014762	exon4	c.C601T	p.R201X	TGCATCGCACAAA	.	80	33	107	0	.	91	A	55340777	G	A	55340777	4	1	68	1	0	0	0	0	0	1	0	0	4476	1095	38	1	973	1	DHCR24	1	55340777	Nonsense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	28235196	55340777	193909844	2	9317											
C1orf43	25912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154184832	154184832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	C1orf43	NM_001098616	exon6	c.T530C	p.L177P	TAGCGTAGGTACT	.	110	69	106	0	.	90	G	154184832	A	G	154184832	3	3	68	1	0	0	0	0	1	0	0	0	2040	420	15	2	239	2	C1orf43	1	154184832	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	98844055	154184832	95065789	3	9318											
PMVK	10654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154904854	154904854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PMVK	NM_006556	exon2	c.G133A	p.G45S	GTGGACCAGAGAG	.	235	59	180	0	.	115	T	154904854	C	T	154904854	3	4	68	1	0	0	0	0	1	0	0	0	12144	594	21	3	461	3	PMVK	1	154904854	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	720022	154904854	94345767	4	9319											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158651436	158651436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SPTA1	NM_003126	exon4	c.412delC	p.H138fs	ACAGGTGGCGTAG	.	233	70	187	0	.	142	-	158651436	G	-	158651436	7	5	68	1	0	1	0	1	0	0	0	0	15115	1348	47	0	7043	0	SPTA1	1	158651436	Frame_Shift_Del	DEL	G	TCGA-DD-A39V-01A-11D-A20W-10	3746582	158651436	90599185	5	9320											
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171174626	171174626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FMO2	NM_001460	exon7	c.G1036C	p.E346Q	AAAGTAGAGAATA	.	119	25	95	0	.	91	C	171174626	G	C	171174626	3	2	68	1	0	0	0	0	1	0	0	0	5955	943	33	4	1058	4	FMO2	1	171174626	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	12523190	171174626	78075995	6	9321											
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202704644	202704644	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KDM5B	NM_006618	exon22	c.G3336A	p.L1112L	ATTTGGCAAGGGC	.	399	72	320	1	.	273	T	202704644	C	T	202704644	2	4	68	1	0	0	0	0	0	0	0	1	8134	709	25	3		3	KDM5B	1	202704644	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	31530018	202704644	46545977	7	9322											
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203037705	203037705	+	Silent	SNP	C	C	T	rs200137584		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PPFIA4	NM_015053	exon14	c.C1755T	p.F585F	GAACTTCGACCAC	.	104	59	94	0	C|0.998;T|0.002	230	T	203037705	C	T	203037705	2	4	68	1	0	0	0	0	0	0	0	1	12312	883	31	1		1	PPFIA4	1	203037705	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	333061	203037705	46212916	8	9323											
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39535117	39535117	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAP4K3	NM_003618	exon15	c.A1086G	p.S362S	TTCTTCTGAACTG	.	52	11	73	0	.	550	C	39535117	T	C	39535117	2	2	68	1	0	0	0	0	0	0	0	1	9261	1567	55	2		2	MAP4K3	2	39535117	Silent	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10		39535117	203664256	9	9324											
ELMOD3	84173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	85617517	85617517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ELMOD3	NM_032213	exon11	c.A1072C	p.T358P	CAGCTTACCAAAA	.	230	16	283	1	.	92	C	85617517	A	C	85617517	3	2	68	1	0	0	0	0	1	0	0	0	5070	391	14	5	1110	5	ELMOD3	2	85617517	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	46082400	85617517	157581856	10	9325											
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113067682	113067682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZC3H6	NM_198581	exon4	c.G557A	p.G186E	CTTTAGGGTCATC	.	71	31	112	0	.	93	A	113067682	G	A	113067682	3	1	68	1	0	0	0	0	1	0	0	0	17568	1232	43	3	571	3	ZC3H6	2	113067682	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	27450165	113067682	130131691	11	9326											
CNTNAP5	129684	broad.mit.edu;bcgsc.ca	37	2	125521613	125521613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CNTNAP5	NM_130773	exon16	c.T2419A	p.F807I	CCTACCTTCCATG	.	177	10	253	0	.	524	A	125521613	T	A	125521613	3	1	68	1	0	0	0	0	1	0	0	0	3650	1609	56	4	2481	4	CNTNAP5	2	125521613	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	12453931	125521613	117677760	12	9327											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NFE2L2	NM_006164	exon2	c.A246C	p.E82D	GAGAAATTCACCT	.	127	52	180	0	.	90	G	178098799	T	G	178098799	3	3	68	1	0	0	0	0	1	0	0	0	10368	1490	52	5	1587	5	NFE2L2	2	178098799	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	52577186	178098799	65100574	13	9328											
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220095010	220095010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ANKZF1	NM_001042410	exon2	c.C31G	p.P11A	CCGGCTCCTGCGT	.	140	38	218	0	.	92	G	220095010	C	G	220095010	3	3	68	1	0	0	0	0	1	0	0	0	693	855	30	4	33	4	ANKZF1	2	220095010	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	41996211	220095010	23104363	14	9329											
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223084872	223084872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PAX3	NM_181457	exon7	c.G1160A	p.G387D	GAGAGGCCATTGC	.	118	42	180	0	.	1821	T	223084872	C	T	223084872	3	4	68	1	0	0	0	0	1	0	0	0	11480	739	26	3	401	3	PAX3	2	223084872	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	2989862	223084872	20114501	15	9330											
HJURP	55355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234749510	234749510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HJURP	NM_018410	exon8	c.T1916G	p.L639W	GATGGCAACTTCT	.	30	8	47	0	.	69	C	234749510	A	C	234749510	3	2	68	1	0	0	0	0	1	0	0	0	7189	131	5	5	338	5	HJURP	2	234749510	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	11664638	234749510	8449863	16	9331											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	245	78	339	0	.	24361	C	41266100	T	C	41266100	3	2	68	1	0	0	0	0	1	0	0	0	4016	1551	54	2	103	2	CTNNB1	3	41266100	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10		41266100	156756330	17	9332											
NEK4	6787	ucsc.edu;bcgsc.ca	37	3	52775493	52775493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NEK4	NM_003157	exon13	c.T2027C	p.L676P	TCAGACAGACAAT	.	37	4	86	0	.	358	G	52775493	A	G	52775493	3	3	68	1	0	0	0	0	1	0	0	0	10326	188	7	2	514	2	NEK4	3	52775493	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	11509393	52775493	145246937	18	9333											
KIAA1257	57501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128712024	128712024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_020741	exon2	c.A124G	p.R42G	GGGCCCTGGCCTT	.	131	45	203	0	.	.	C	128712024	T	C	128712024	3	2	68	1	0	0	0	0	1	0	0	0	8218	1579	55	2	1133	2	KIAA1257	3	128712024	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	75936531	128712024	69310406	19	9334											
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	133185754	133185754	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BFSP2	NM_003571	exon5	c.C974A	p.S325X	ACACTTCGTGCCA	.	196	20	241	0	.	90	A	133185754	C	A	133185754	4	1	68	1	0	0	0	0	0	1	0	0	1416	893	31	1	992	1	BFSP2	3	133185754	Nonsense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	4473730	133185754	64836676	20	9335											
HTR3E	285242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183822009	183822009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HTR3E	NM_182589	exon3	c.T364A	p.C122S	GAGGAATGTGAGG	.	49	11	66	0	.	92	A	183822009	T	A	183822009	3	1	68	1	0	0	0	0	1	0	0	0	7448	1464	51	4	374	4	HTR3E	3	183822009	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	50636255	183822009	14200421	21	9336											
CRYGS	1427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186256648	186256648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CRYGS	NM_017541	exon3	c.G374T	p.R125L	ATCTCTCGCATGT	.	127	53	165	0	.	90	A	186256648	C	A	186256648	3	1	68	1	0	0	0	0	1	0	0	0	3919	884	31	1	166	1	CRYGS	3	186256648	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	2434639	186256648	11765782	22	9337											
DGKQ	1609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	967112	967112	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DGKQ	NM_001347	exon1	c.G159T	p.P53P	GGGGCCCGGGGCT	.	30	12	55	1	.	537	A	967112	C	A	967112	2	1	68	1	0	0	0	0	0	0	0	1	4473	639	23	1		1	DGKQ	4	967112	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		967112	190187164	23	9338											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1808893	1808893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FGFR3	NM_001163213	exon18	c.G2331A	p.Q777Q	TGGCCAGGACACC	.	133	43	204	0	.	9542	A	1808893	G	A	1808893	2	1	68	1	0	0	0	0	0	0	0	1	5867	991	35	3		3	FGFR3	4	1808893	Silent	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	841781	1808893	189345383	24	9339											
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	16014922	16014922	+	Missense_Mutation	SNP	G	G	T	rs137853006	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PROM1	NM_006017	exon10	c.C1117A	p.R373S	TTTGGCGTTGTAC	.	66	20	90	0	.	207	T	16014922	G	T	16014922	3	4	68	1	0	0	0	0	1	0	0	0	12555	1145	40	1	1548	1	PROM1	4	16014922	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	14206029	16014922	175139354	25	9340											
PTTG2	10744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	37962092	37962092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_006607	exon1	c.G37T	p.E13X	ATTGGAGAACCAG	.	164	57	187	0	.	.	T	37962092	G	T	37962092	4	4	68	1	0	0	0	0	0	1	0	0	12821	943	33	3	39	3	PTTG2	4	37962092	Nonsense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	21947170	37962092	153192184	26	9341											
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147824847	147824847	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TTC29	NM_031956	exon6	c.T435A	p.A145A	GGCCAGAGCATAC	.	95	45	130	0	.	90	T	147824847	A	T	147824847	2	4	68	1	0	0	0	0	0	0	0	1	16693	291	11	4		4	TTC29	4	147824847	Silent	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	109862755	147824847	43329429	27	9342											
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159782775	159782775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FNIP2	NM_020840	exon12	c.C1312G	p.L438V	GCCTTACTGACTG	.	170	49	222	0	.	68	G	159782775	C	G	159782775	3	3	68	1	0	0	0	0	1	0	0	0	5976	564	20	4	1358	4	FNIP2	4	159782775	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	11957928	159782775	31371501	28	9343											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16794852	16794852	+	Missense_Mutation	SNP	G	G	A	rs192053260	by1000genomes	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYO10	NM_012334	exon4	c.C370T	p.R124C	GGTGGCGCCGGCT	.	118	55	101	0	G|0.999;A|0.000	3	A	16794852	G	A	16794852	3	1	68	1	0	0	0	0	1	0	0	0	10062	1087	38	1	5958	1	MYO10	5	16794852	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10		16794852	164120408	29	9344											
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	19838935	19838944	+	Frame_Shift_Del	DEL	CCCCTTTTGG	CCCCTTTTGG	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	CCCCTTTTGG	CCCCTTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDH18	NM_001167667	exon3	c.152_161del	p.51_54del	ACCCATCCCCTTT	.	121	38	144	0	.	159	-	19838944	CCCCTTTTGG	-	19838935	7	5	68	1	0	1	0	1	0	0	0	0	3103	855	30	0	2255	0	CDH18	5	19838935	Frame_Shift_Del	DEL	CCCCTTTTGG	TCGA-DD-A39V-01A-11D-A20W-10	3044083	19838935	161076325	30	9345											
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	95733104	95733104	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCSK1	NM_000439	exon12	c.1658delT	p.F553fs	GACATGAAGTCCC	.	151	39	158	0	.	92	-	95733104	A	-	95733104	7	5	68	1	0	1	0	1	0	0	0	0	11600	246	9	0	615	0	PCSK1	5	95733104	Frame_Shift_Del	DEL	A	TCGA-DD-A39V-01A-11D-A20W-10	75894169	95733104	85182156	31	9346											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128958013	128958013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ADAMTS19	NM_133638	exon10	c.C1724G	p.P575R	TTGGGCCATTGGC	.	241	55	247	0	.	295	G	128958013	C	G	128958013	3	3	68	1	0	0	0	0	1	0	0	0	264	594	21	4	1762	4	ADAMTS19	5	128958013	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	33224909	128958013	51957247	32	9347											
PCDHA6	56142	broad.mit.edu;bcgsc.ca	37	5	140209065	140209065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCDHA6	NM_018909	exon1	c.C1389T	p.F463F	AGTGTTCGTGAAG	.	381	36	415	1	.	92	T	140209065	C	T	140209065	2	4	68	1	0	0	0	0	0	0	0	1	11528	883	31	1		1	PCDHA6	5	140209065	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	11251052	140209065	40706195	33	9348											
HAVCR1	26762	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	156479625	156479625	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HAVCR1	NM_001099414	exon4	c.C420T	p.T140T	CGTGACGGTTGGA	.	296	21	308	0	.	92	A	156479625	G	A	156479625	2	1	68	1	0	0	0	0	0	0	0	1	6973	1103	39	1		1	HAVCR1	5	156479625	Silent	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	16270560	156479625	24435635	34	9349											
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176011757	176011757	+	Silent	SNP	C	C	T	rs180931810		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDHR2	NM_017675	exon19	c.C2475T	p.H825H	ACAGCACGGCCAG	.	175	40	135	0	C|0.999;T|0.001	70	T	176011757	C	T	176011757	2	4	68	1	0	0	0	0	0	0	0	1	3119	535	19	1		1	CDHR2	5	176011757	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	19532132	176011757	4903503	35	9350											
AIF1	199	ucsc.edu;bcgsc.ca	37	6	31583458	31583458	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	AIF1	NM_001623	exon3	c.C99T	p.D33D	CCTAGACGATCCC	.	41	4	43	0	.	515	T	31583458	C	T	31583458	2	4	68	1	0	0	0	0	0	0	0	1	424	535	19	1		1	AIF1	6	31583458	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		31583458	139531609	36	9351											
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35471393	35471393	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TULP1	NM_003322	exon13	c.C1266T	p.T422T	GATGACGGTCATG	.	56	13	81	0	.	92	A	35471393	G	A	35471393	2	1	68	1	0	0	0	0	0	0	0	1	16770	1103	39	1		1	TULP1	6	35471393	Silent	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	3887935	35471393	135643674	37	9352											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69703824	69703824	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	BAI3,brain,glioma,+1	BAI3	NM_001704	exon11	c.A1899G	p.A633A	AAGGGCAAGTTAC	.	94	28	92	0	.	1148	G	69703824	A	G	69703824	2	3	68	1	0	0	0	0	0	0	0	1	1300	117	5	2		2	BAI3	6	69703824	Silent	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	34232431	69703824	101411243	38	9353											
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80196750	80196750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LCA5	NM_001122769	exon8	c.G2065T	p.D689Y	TTTCATCTTCTAC	.	100	39	128	0	.	90	A	80196750	C	A	80196750	3	1	68	1	0	0	0	0	1	0	0	0	8656	913	32	3	32	3	LCA5	6	80196750	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	10492926	80196750	90918317	39	9354											
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132649562	132649562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MOXD1	NM_015529	exon5	c.G835T	p.G279C	CTCCACCAATAGC	.	102	5	119	0	.	515	A	132649562	C	A	132649562	3	1	68	1	0	0	0	0	1	0	0	0	9720	594	21	3	1038	3	MOXD1	6	132649562	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	52452812	132649562	38465505	40	9355											
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155498016	155498016	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TIAM2	NM_012454	exon9	c.A2428T	p.I810F	TGGGAAATCCAGA	.	71	37	99	0	.	93	T	155498016	A	T	155498016	3	4	68	1	0	0	0	0	1	0	0	0	15888	101	4	4	2454	4	TIAM2	6	155498016	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	22848454	155498016	15617051	41	9356											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3678680	3678680	+	Missense_Mutation	SNP	G	G	A	rs143792155		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SDK1	NM_152744	exon3	c.G503A	p.R168H	TTTACCGCTGCGT	.	135	30	118	0	G|1.000;A|0.000	138	A	3678680	G	A	3678680	3	1	68	1	0	0	0	0	1	0	0	0	13968	1087	38	1	513	1	SDK1	7	3678680	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10		3678680	155459983	42	9357											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	43484273	43484273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HECW1	NM_015052	exon11	c.A1502G	p.E501G	GGGAAGAAGAGGA	.	96	8	93	0	.	669	G	43484273	A	G	43484273	3	3	68	1	0	0	0	0	1	0	0	0	7042	246	9	2	1536	2	HECW1	7	43484273	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	39805593	43484273	115654390	43	9358											
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84628838	84628838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SEMA3D	NM_152754	exon17	c.A2252C	p.K751T	ATGTGCTTCCACT	.	313	84	319	0	.	138	G	84628838	T	G	84628838	3	3	68	1	0	0	0	0	1	0	0	0	14027	1609	56	5	85	5	SEMA3D	7	84628838	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	41144565	84628838	74509825	44	9359											
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2954519	2954519	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CSMD1	NM_033225	exon47	c.A6990G	p.G2330G	AATGACTCCCGAT	.	40	4	101	0	.	86	C	2954519	T	C	2954519	2	2	68	1	0	0	0	0	0	0	0	1	3944	1538	54	2		2	CSMD1	8	2954519	Silent	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10		2954519	143409503	45	9360											
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53085080	53085080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ST18	NM_014682	exon10	c.G341A	p.R114K	TCCTTCCTACTGG	.	66	8	38	0	.	95	T	53085080	C	T	53085080	3	4	68	1	0	0	0	0	1	0	0	0	15211	681	24	3	2870	3	ST18	8	53085080	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	50130561	53085080	93278942	46	9361											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145773562	145773562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARHGAP39	NM_025251	exon6	c.C908T	p.S303F	CGCGGGGAGGAGG	.	62	11	66	0	.	90	A	145773562	G	A	145773562	3	1	68	1	0	0	0	0	1	0	0	0	884	1174	41	3	2468	3	ARHGAP39	8	145773562	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	92688482	145773562	590460	47	9362											
GLDC	2731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6592200	6592200	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GLDC	NM_000170	exon11	c.A1425G	p.T475T	ATTGACTGTTTCA	.	46	21	69	0	.	92	C	6592200	T	C	6592200	2	2	68	1	0	0	0	0	0	0	0	1	6433	1567	55	2		2	GLDC	9	6592200	Silent	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10		6592200	134621231	48	9363											
ZFAND5	7763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74970914	74970914	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZFAND5	NM_001102421	exon6	c.A597G	p.R199R	CTCTTTTCTGATT	.	161	40	281	0	.	90	C	74970914	T	C	74970914	2	2	68	1	0	0	0	0	0	0	0	1	17627	1780	62	2		2	ZFAND5	9	74970914	Silent	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	68378714	74970914	66242517	49	9364											
SVEP1	79987	ucsc.edu;bcgsc.ca	37	9	113171173	113171173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SVEP1	NM_153366	exon38	c.A6707G	p.K2236R	ACTGACTTATAGC	.	24	4	43	0	.	75	C	113171173	T	C	113171173	3	2	68	1	0	0	0	0	1	0	0	0	15417	1609	56	2	4052	2	SVEP1	9	113171173	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	38200259	113171173	28042258	50	9365											
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22606855	22606855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	COMMD3	NM_012071	exon2	c.A182G	p.H61R	TAAAACATTGTCA	.	193	69	296	0	.	115	G	22606855	A	G	22606855	3	3	68	1	0	0	0	0	1	0	0	0	3717	217	8	2	188	2	COMMD3	10	22606855	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10		22606855	112927892	51	9366											
BCCIP	56647	broad.mit.edu;bcgsc.ca	37	10	127541724	127541724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BCCIP	NM_016567	exon8	c.T881C	p.V294A	CCCTGGTTTCTCT	.	72	7	74	0	.	154	C	127541724	T	C	127541724	3	2	68	1	0	0	0	0	1	0	0	0	1356	1725	60	2	1115	2	BCCIP	10	127541724	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	104934869	127541724	7993023	52	9367											
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869815	4869815	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	OR51S1	NM_001004758	exon1	c.T624C	p.F208F	AACCACAAATAGG	.	46	16	90	0	.	72	G	4869815	A	G	4869815	2	3	68	1	0	0	0	0	0	0	0	1	11105	127	5	2		2	OR51S1	11	4869815	Silent	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10		4869815	130136701	53	9368											
NEU3	10825	broad.mit.edu;bcgsc.ca	37	11	74716844	74716844	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NEU3	NM_006656	exon3	c.T693C	p.P231P	CAGGCCTCATTCT	.	169	7	214	0	.	24	C	74716844	T	C	74716844	2	2	68	1	0	0	0	0	0	0	0	1	10343	1538	54	2		2	NEU3	11	74716844	Silent	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	69847029	74716844	60289672	54	9369											
CWF19L2	143884	ucsc.edu;bcgsc.ca	37	11	107309856	107309856	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CWF19L2	NM_152434	exon6	c.T624C	p.G208G	TGGAAGACCTGTC	.	37	4	68	0	.	68	G	107309856	A	G	107309856	2	3	68	1	0	0	0	0	0	0	0	1	4072	262	10	2		2	CWF19L2	11	107309856	Silent	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	32593012	107309856	27696660	55	9370											
HOXC9	3225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54394044	54394044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HOXC9	NM_006897	exon1	c.A72G	p.L24L	CCTCCTAGCGTCC	.	110	27	133	0	.	155	G	54394044	A	G	54394044	2	3	68	1	0	0	0	0	0	0	0	1	7317	407	15	2		2	HOXC9	12	54394044	Silent	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10		54394044	79457851	56	9371											
LRP1	4035	broad.mit.edu;bcgsc.ca	37	12	57604994	57604994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LRP1	NM_002332	exon84	c.T12952C	p.C4318R	GGCACATGCCAGA	.	121	6	166	0	.	596	C	57604994	T	C	57604994	3	2	68	1	0	0	0	0	1	0	0	0	8951	1464	51	2	13286	2	LRP1	12	57604994	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	3210950	57604994	76246901	57	9372											
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	99020519	99020519	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IKBIP	NM_153687	exon3	c.323delA	p.Q108fs	GCTTCCTGCAGGA	.	91	22	99	0	.	226	-	99020519	T	-	99020519	7	5	68	1	0	1	0	1	0	0	0	0	7609	1580	55	0	1574	0	IKBIP	12	99020519	Frame_Shift_Del	DEL	T	TCGA-DD-A39V-01A-11D-A20W-10	41415525	99020519	34831376	58	9373											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117658021	117658022	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	p.A1377E	CTTCAGGGCTCGG	.	41	11	60	0	.	.	TT	117658022	GG	TT	117658021	3	4	68	1	0	0	0	0	1	0	0	0	10541	1219	43	3	287	3	NOS1	12	117658021	Missense_Mutation	DNP	GG	TCGA-DD-A39V-01A-11D-A20W-10	18637502	117658021	16193874	59	9374											
WASF3	10810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	27255234	27255234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WASF3	NM_006646	exon8	c.C760T	p.P254S	GCTACTCCCAACC	.	107	32	209	0	.	91	T	27255234	C	T	27255234	3	4	68	1	0	0	0	0	1	0	0	0	17251	855	30	3	782	3	WASF3	13	27255234	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		27255234	87914644	60	9375											
B3GALTL	145173	ucsc.edu;bcgsc.ca	37	13	31789232	31789232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	B3GALTL	NM_194318	exon2	c.T115C	p.S39P	AAGCAGTCTCAGG	.	46	4	76	0	.	92	C	31789232	T	C	31789232	3	2	68	1	0	0	0	0	1	0	0	0	1252	1667	58	2	121	2	B3GALTL	13	31789232	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	4533998	31789232	83380646	61	9376											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64497758	64497758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SYNE2	NM_182914	exon45	c.C6904T	p.Q2302X	AGTTTACAAGATG	.	258	85	393	1	.	164	T	64497758	C	T	64497758	4	4	68	1	0	0	0	0	0	1	0	0	15443	479	17	3	7078	3	SYNE2	14	64497758	Nonsense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		64497758	42851782	62	9377											
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35274530	35274530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF770	NM_014106	exon3	c.G1106A	p.C369Y	AGATCACAATTTC	.	77	19	128	0	.	91	T	35274530	C	T	35274530	3	4	68	1	0	0	0	0	1	0	0	0	18140	478	17	3	973	3	ZNF770	15	35274530	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		35274530	67256862	63	9378											
DUOXA1	90527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45413291	45413291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DUOXA1	NM_144565	exon6	c.C334G	p.L112V	CTGTGAGTGTGAT	.	110	37	115	0	.	227	C	45413291	G	C	45413291	3	2	68	1	0	0	0	0	1	0	0	0	4802	1029	36	4	1141	4	DUOXA1	15	45413291	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	10138761	45413291	57118101	64	9379											
DIS3L	115752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66604085	66604085	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DIS3L	NM_001143688	exon5	c.T582A	p.P194P	CTGGCCTGATTTA	.	30	12	63	0	.	92	A	66604085	T	A	66604085	2	1	68	1	0	0	0	0	0	0	0	1	4536	1567	55	4		4	DIS3L	15	66604085	Silent	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	21190794	66604085	35927307	65	9380											
FBXL16	146330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	745857	745857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FBXL16	NM_153350	exon3	c.G700T	p.A234S	GCCCGGCCTCGGT	.	111	47	195	0	.	226	A	745857	C	A	745857	3	1	68	1	0	0	0	0	1	0	0	0	5712	739	26	3	755	3	FBXL16	16	745857	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		745857	89608896	66	9381											
PARN	5073	broad.mit.edu;bcgsc.ca	37	16	14704624	14704624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PARN	NM_002582	exon7	c.A431G	p.E144G	TACTGCTCTCTTA	.	114	7	158	0	.	24	C	14704624	T	C	14704624	3	2	68	1	0	0	0	0	1	0	0	0	11453	1551	54	2	1560	2	PARN	16	14704624	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	13958767	14704624	75650129	67	9382											
PDF	64146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	69363005	69363005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_022341	exon2	c.C652A	p.H218N	GCAGGTGGTCCAT	.	67	23	83	0	.	.	T	69363005	G	T	69363005	3	4	68	1	0	0	0	0	1	0	0	0	11656	1348	47	3	83	3	PDF	16	69363005	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	54658381	69363005	20991748	68	9383											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1634133	1634133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WDR81	NM_001163809	exon3	c.T3860C	p.L1287P	CGGTCCTGGGCGA	.	80	29	119	0	.	91	C	1634133	T	C	1634133	3	2	68	1	0	0	0	0	1	0	0	0	17327	1580	55	2	3932	2	WDR81	17	1634133	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10		1634133	79561077	69	9384											
DHX33	56919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5365670	5365670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DHX33	NM_020162	exon3	c.G647T	p.R216M	TTTCTCCTCTTCT	.	185	57	202	0	.	228	A	5365670	C	A	5365670	3	1	68	1	0	0	0	0	1	0	0	0	4506	681	24	3	1516	3	DHX33	17	5365670	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	3731537	5365670	75829540	70	9385											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41203109	41203109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BRCA1	NM_007300	exon21	c.G5366A	p.C1789Y	CCATAGCAACAGA	.	59	20	101	0	.	3415	T	41203109	C	T	41203109	3	4	68	1	0	0	0	0	1	0	0	0	1498	710	25	3	304	3	BRCA1	17	41203109	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	35837439	41203109	39992101	71	9386											
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42273177	42273177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ATXN7L3	NM_020218	exon7	c.T564A	p.D188E	AAAAGGATCCGAA	.	39	13	68	0	.	68	T	42273177	A	T	42273177	3	4	68	1	0	0	0	0	1	0	0	0	1218	330	12	4	524	4	ATXN7L3	17	42273177	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	1070068	42273177	38922033	72	9387											
EPX	8288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56276412	56276412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	EPX	NM_000502	exon8	c.T1132C	p.S378P	ACCCGATCAACGG	.	33	5	26	0	.	92	C	56276412	T	C	56276412	3	2	68	1	0	0	0	0	1	0	0	0	5200	1435	50	2	1162	2	EPX	17	56276412	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	14003235	56276412	24918798	73	9388											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60767531	60767531	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MRC2	NM_006039	exon26	c.C3757A	p.R1253R	CCTCCCCGAAGAA	.	252	74	366	1	.	117	A	60767531	C	A	60767531	2	1	68	1	0	0	0	0	0	0	0	1	9758	644	23	1		1	MRC2	17	60767531	Silent	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	4491119	60767531	20427679	74	9389											
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	67210857	67210857	+	Nonsense_Mutation	SNP	G	G	A	rs200246933	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ABCA10	NM_080282	exon10	c.C994T	p.R332X	AAACTCGCTCAAA	.	95	24	127	0	G|0.999;C|0.000	93	A	67210857	G	A	67210857	4	1	68	1	0	0	0	0	0	1	0	0	29	1095	38	1	3761	1	ABCA10	17	67210857	Nonsense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	6443326	67210857	13984353	75	9390											
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78222437	78222437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLC26A11	NM_173626	exon15	c.G1486A	p.A496T	ATGGAGGCTCTGC	.	186	56	249	0	.	90	A	78222437	G	A	78222437	3	1	68	1	0	0	0	0	1	0	0	0	14516	1203	42	3	1536	3	SLC26A11	17	78222437	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	11011580	78222437	2972773	76	9391											
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31685081	31685081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NOL4	NM_003787	exon3	c.G458A	p.R153Q	AGAAATCGTGTCA	.	147	56	180	0	.	93	T	31685081	C	T	31685081	3	4	68	1	0	0	0	0	1	0	0	0	10524	884	31	1	1494	1	NOL4	18	31685081	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		31685081	46392167	77	9392											
MOCOS	55034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	33831219	33831219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MOCOS	NM_017947	exon11	c.A2137G	p.R713G	TCTCAAAGGAATG	.	48	5	54	0	.	91	G	33831219	A	G	33831219	3	3	68	1	0	0	0	0	1	0	0	0	9689	63	3	2	2179	2	MOCOS	18	33831219	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	2146138	33831219	44246029	78	9393											
THEG	51298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	375911	375911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	THEG	NM_016585	exon1	c.G60T	p.R20S	TTCCGACCTGCCC	.	46	10	40	0	.	91	A	375911	C	A	375911	3	1	68	1	0	0	0	0	1	0	0	0	15854	506	18	3	1111	3	THEG	19	375911	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10		375911	58753072	79	9394											
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2934207	2934207	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF77	NM_021217	exon4	c.C918T	p.S306S	GTAACAGCTGAAT	.	157	78	198	0	.	91	A	2934207	G	A	2934207	2	1	68	1	0	0	0	0	0	0	0	1	18139	962	34	3		3	ZNF77	19	2934207	Silent	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	2558296	2934207	56194776	80	9395											
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10823446	10823446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	QTRT1	NM_031209	exon8	c.G874T	p.A292S	GGCTCTGCCCTGG	.	103	54	82	0	.	91	T	10823446	G	T	10823446	3	4	68	1	0	0	0	0	1	0	0	0	12885	1319	46	3	904	3	QTRT1	19	10823446	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10	7889239	10823446	48305537	81	9396											
MAST3	23031	broad.mit.edu;bcgsc.ca	37	19	18241483	18241483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAST3	NM_015016	exon13	c.A1316G	p.H439R	GGCGCCACCTATG	.	133	6	150	0	.	502	G	18241483	A	G	18241483	3	3	68	1	0	0	0	0	1	0	0	0	9326	159	6	2	1366	2	MAST3	19	18241483	Missense_Mutation	SNP	A	TCGA-DD-A39V-01A-11D-A20W-10	7418037	18241483	40887500	82	9397											
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19745726	19745726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GMIP	NM_016573	exon17	c.G1762A	p.V588I	CGCTGACCCGGTA	.	83	25	69	0	.	91	T	19745726	C	T	19745726	3	4	68	1	0	0	0	0	1	0	0	0	6491	507	18	3	1170	3	GMIP	19	19745726	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	1504243	19745726	39383257	83	9398											
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52375810	52375810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF577	NM_032679	exon7	c.A1433C	p.Y478S	GTAAGATACAAGA	.	69	24	57	0	.	91	G	52375810	T	G	52375810	3	3	68	1	0	0	0	0	1	0	0	0	18006	1406	49	5	28	5	ZNF577	19	52375810	Missense_Mutation	SNP	T	TCGA-DD-A39V-01A-11D-A20W-10	32630084	52375810	6753173	84	9399											
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61870579	61870579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BIRC7	NM_139317	exon5	c.G643A	p.E215K	GCCCAGGAGCCAG	.	48	22	47	0	.	659	A	61870579	G	A	61870579	3	1	68	1	0	0	0	0	1	0	0	0	1439	1175	41	3	661	3	BIRC7	20	61870579	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10		61870579	1154941	85	9400											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29438502	29438502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNRF3	NM_001206998	exon3	c.G446C	p.R149P	TACAGCGGGGAGC	.	61	12	72	0	.	69	C	29438502	G	C	29438502	3	2	68	1	0	0	0	0	1	0	0	0	18210	1116	39	4	152	4	ZNRF3	22	29438502	Missense_Mutation	SNP	G	TCGA-DD-A39V-01A-11D-A20W-10		29438502	21866064	86	9401											
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37524843	37524843	+	Missense_Mutation	SNP	C	C	T	rs143857582	byfrequency	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IL2RB	NM_000878	exon10	c.G949A	p.G317S	CCAGGCCGCCAGG	.	60	16	85	0	C|0.999;T|0.001	90	T	37524843	C	T	37524843	3	4	68	1	0	0	0	0	1	0	0	0	7687	652	23	1	710	1	IL2RB	22	37524843	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	8086341	37524843	13779723	87	9402											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50906873	50906873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SBF1	NM_002972	exon2	c.G73T	p.G25C	TCTGGCCCTGGCC	.	52	14	50	0	.	90	A	50906873	C	A	50906873	3	1	68	1	0	0	0	0	1	0	0	0	13858	623	22	3	5768	3	SBF1	22	50906873	Missense_Mutation	SNP	C	TCGA-DD-A39V-01A-11D-A20W-10	13382030	50906873	397693	88	9403											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27099008	27099008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ARID1A	NM_006015	exon13	c.C3424T	p.Q1142X	TCTATGCAGGGGC	.	189	79	211	0	.	584	T	27099008	C	T	27099008	4	4	69	1	0	0	0	0	0	1	0	0	913	711	25	3	3474	3	ARID1A	1	27099008	Nonsense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10		27099008	222151613	1	9404											
FLG2	388698	hgsc.bcm.edu;broad.mit.edu	37	1	152327767	152327767	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FLG2	NM_001014342	exon3	c.2495delG	p.G832fs	CCAAAGCCAGAGG	.	208	18	166	0	.	151	-	152327767	C	-	152327767	7	5	69	1	0	1	0	1	0	0	0	0	5923	739	26	0	4684	0	FLG2	1	152327767	Frame_Shift_Del	DEL	C	TCGA-DD-A39W-01A-11D-A20W-10	125228759	152327767	96922854	2	9405											
CD1B	910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158299817	158299817	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CD1B	NM_001764	exon3	c.C432A	p.V144V	ATTCTTGACACTC	.	263	86	238	0	.	92	T	158299817	G	T	158299817	2	4	69	1	0	0	0	0	0	0	0	1	2975	1277	45	3		3	CD1B	1	158299817	Silent	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	5972050	158299817	90950804	3	9406											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182848473	182848473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DHX9	NM_001357	exon21	c.G2440A	p.G814S	GGAATTGGCCAAT	.	148	29	147	0	.	92	A	182848473	G	A	182848473	3	1	69	1	0	0	0	0	1	0	0	0	4516	1348	47	3	2518	3	DHX9	1	182848473	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	24548656	182848473	66402148	4	9407											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	214542934	214542934	+	Missense_Mutation	SNP	G	G	T	rs61749333	byfrequency;alternate_allele	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PTPN14	NM_005401	exon17	c.C3137A	p.T1046K	GAATCCGTTCGAA	.	323	18	299	0	G|0.999;C|0.001	290	T	214542934	G	T	214542934	3	4	69	1	0	0	0	0	1	0	0	0	12783	1145	40	1	438	1	PTPN14	1	214542934	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	31694461	214542934	34707687	5	9408											
CCDC88A	55704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55589549	55589549	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CCDC88A	NM_018084	exon7	c.A522G	p.Q174Q	CATCCATTGCAGG	.	268	47	331	1	.	94	C	55589549	T	C	55589549	2	2	69	1	0	0	0	0	0	0	0	1	2863	1490	52	2		2	CCDC88A	2	55589549	Silent	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		55589549	187609824	6	9409											
MAL	4118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95713853	95713853	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MAL	NM_022438	exon2	c.G243A	p.E81E	TGGAGAGACTTCC	.	179	64	267	0	.	514	A	95713853	G	A	95713853	2	1	69	1	0	0	0	0	0	0	0	1	9199	933	33	3		3	MAL	2	95713853	Silent	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	40124304	95713853	147485520	7	9410											
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	120012401	120012401	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	STEAP3	NM_182915	exon5	c.1192delT	p.W398fs	CTCAACTGGAGGG	.	104	39	170	0	.	91	-	120012401	T	-	120012401	7	5	69	1	0	1	0	1	0	0	0	0	15278	1580	55	0	1206	0	STEAP3	2	120012401	Frame_Shift_Del	DEL	T	TCGA-DD-A39W-01A-11D-A20W-10	24298548	120012401	123186972	8	9411											
P4HTM	54681	broad.mit.edu;bcgsc.ca	37	3	49038898	49038898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	P4HTM	NM_177938	exon3	c.A464G	p.E155G	ATGAAGAGTGTCG	.	99	6	132	1	.	205	G	49038898	A	G	49038898	3	3	69	1	0	0	0	0	1	0	0	0	11360	304	11	2	474	2	P4HTM	3	49038898	Missense_Mutation	SNP	A	TCGA-DD-A39W-01A-11D-A20W-10		49038898	148983532	9	9412											
CCDC80	151887	ucsc.edu;bcgsc.ca	37	3	112328903	112328903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CCDC80	NM_199511	exon6	c.G2347A	p.V783M	AGATCACCAGCAA	.	44	4	76	0	.	92	T	112328903	C	T	112328903	3	4	69	1	0	0	0	0	1	0	0	0	2854	507	18	3	517	3	CCDC80	3	112328903	Missense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	63290005	112328903	85693527	10	9413											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148868468	148868468	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HPS3	NM_032383	exon6	c.1245+1G>A	.	CTGAAGGTAAGAA	.	110	18	131	0	.	158	A	148868468	G	A	148868468	5	1	69	1	0	0	0	0	0	0	1	0	7340	1275	44	3	1268	3	HPS3	3	148868468	Splice_Site	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	36539565	148868468	49153962	11	9414											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37007558	37007558	+	Silent	SNP	A	A	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NIPBL	NM_015384	exon18	c.A4221C	p.T1407T	TCTTACAGACACA	.	118	51	162	0	.	293	C	37007558	A	C	37007558	2	2	69	1	0	0	0	0	0	0	0	1	10428	175	7	5		5	NIPBL	5	37007558	Silent	SNP	A	TCGA-DD-A39W-01A-11D-A20W-10		37007558	143907702	12	9415	52	2									
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37007562	37007562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NIPBL	NM_015384	exon18	c.A4225G	p.T1409A	ACAGACACAACAA	.	117	51	158	0	.	293	G	37007562	A	G	37007562	3	3	69	1	0	0	0	0	1	0	0	0	10428	159	6	2	4291	2	NIPBL	5	37007562	Missense_Mutation	SNP	A	TCGA-DD-A39W-01A-11D-A20W-10	4	37007562	143907698	13	9416	52	2									
GPR98	84059	ucsc.edu;bcgsc.ca	37	5	90124798	90124798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GPR98	NM_032119	exon77	c.A16406G	p.Y5469C	AACTATATGAAGC	.	39	4	49	0	.	103	G	90124798	A	G	90124798	3	3	69	1	0	0	0	0	1	0	0	0	6721	449	16	2	16712	2	GPR98	5	90124798	Missense_Mutation	SNP	A	TCGA-DD-A39W-01A-11D-A20W-10	53117236	90124798	90790462	14	9417											
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95224587	95224587	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ELL2	NM_012081	exon12	c.G1911A	p.E637E	CCATGACTCTGCT	.	81	14	125	0	.	90	T	95224587	C	T	95224587	2	4	69	1	0	0	0	0	0	0	0	1	5063	564	20	3		3	ELL2	5	95224587	Silent	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	5099789	95224587	85690673	15	9418											
PCDHB12	56124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140589809	140589809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PCDHB12	NM_018932	exon1	c.G1330A	p.V444I	TCCGACGTCAATG	.	165	9	135	0	.	93	A	140589809	G	A	140589809	3	1	69	1	0	0	0	0	1	0	0	0	11537	1145	40	1	1332	1	PCDHB12	5	140589809	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	45365222	140589809	40325451	16	9419											
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140744161	140744161	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PCDHGA5	NM_032054	exon1	c.C264T	p.G88G	CGCGGGCAGGATA	.	161	57	111	0	.	35	T	140744161	C	T	140744161	2	4	69	1	0	0	0	0	0	0	0	1	11557	697	25	3		3	PCDHGA5	5	140744161	Silent	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	154352	140744161	40171099	17	9420											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	141051870	141051870	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ARAP3	NM_022481	exon11	c.1386-2A>T	.	TGAAGCTGAGGGG	.	152	8	144	0	.	291	A	141051870	T	A	141051870	5	1	69	1	0	0	0	0	0	0	1	0	840	1594	55	4	3346	4	ARAP3	5	141051870	Splice_Site	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10	307709	141051870	39863390	18	9421											
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080097	29080097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	OR2J3	NM_001005216	exon1	c.T430G	p.C144G	CGTTTCTGCCACC	.	331	132	450	1	.	90	G	29080097	T	G	29080097	3	3	69	1	0	0	0	0	1	0	0	0	11004	1580	55	5	432	5	OR2J3	6	29080097	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		29080097	142034970	19	9422											
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29342651	29342651	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	OR12D3	NM_030959	exon1	c.G414A	p.V138V	AATACACACCTGG	.	81	34	90	0	.	133	T	29342651	C	T	29342651	2	4	69	1	0	0	0	0	0	0	0	1	10932	465	17	3		3	OR12D3	6	29342651	Silent	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	262554	29342651	141772416	20	9423											
DHX16	8449	ucsc.edu;bcgsc.ca	37	6	30624171	30624171	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DHX16	NM_003587	exon15	c.C2427T	p.T809T	CACCGTGGTGAGC	.	45	4	63	0	.	228	A	30624171	G	A	30624171	2	1	69	1	0	0	0	0	0	0	0	1	4502	1335	47	3		3	DHX16	6	30624171	Silent	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	1281520	30624171	140490896	21	9424											
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	147830139	147830139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SAMD5	NM_001030060	exon1	c.C75A	p.N25K	GGATAACGGCTAC	.	211	63	223	0	.	68	A	147830139	C	A	147830139	3	1	69	1	0	0	0	0	1	0	0	0	13823	535	19	1	77	1	SAMD5	6	147830139	Missense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	117205968	147830139	23284928	22	9425											
THSD7A	221981	broad.mit.edu;bcgsc.ca	37	7	11486897	11486897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	THSD7A	NM_015204	exon12	c.A2760G	p.G920G	ACAGTCTCCATTG	.	106	6	146	0	.	71	C	11486897	T	C	11486897	2	2	69	1	0	0	0	0	0	0	0	1	15876	1538	54	2		2	THSD7A	7	11486897	Silent	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		11486897	147651766	23	9426											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100686943	100686943	+	Silent	SNP	G	G	A	rs201108444		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MUC17	NM_001040105	exon3	c.G12246A	p.T4082T	CTCCACGACTGTG	.	191	40	245	0	.	95	A	100686943	G	A	100686943	2	1	69	1	0	0	0	0	0	0	0	1	9974	1045	37	1		1	MUC17	7	100686943	Silent	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	89200046	100686943	58451720	24	9427											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3267015	3267015	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CSMD1	NM_033225	exon13	c.G1674A	p.E558E	CACCAGCTCAAAG	.	112	55	146	0	.	86	T	3267015	C	T	3267015	2	4	69	1	0	0	0	0	0	0	0	1	3944	796	28	3		3	CSMD1	8	3267015	Silent	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10		3267015	143097007	25	9428											
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24170902	24170903	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	.	.	.	p.G129F	TTCAGGGGCTACT	.	123	10	153	0	.	.	TT	24170903	GG	TT	24170902	3	4	69	1	0	0	0	0	1	0	0	0	246	1246	43	3	407	3	ADAM28	8	24170902	Missense_Mutation	DNP	GG	TCGA-DD-A39W-01A-11D-A20W-10	20903887	24170902	122193120	26	9429											
PTK2	5747	ucsc.edu;bcgsc.ca	37	8	141774380	141774380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PTK2	NM_005607	exon15	c.A1253G	p.D418G	GCATAATCATCTG	.	43	4	44	0	.	1517	C	141774380	T	C	141774380	3	2	69	1	0	0	0	0	1	0	0	0	12762	1435	50	2	2043	2	PTK2	8	141774380	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10	117603478	141774380	4589642	27	9430											
PHPT1	29085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139744952	139744958	+	Frame_Shift_Del	DEL	CAGCAGA	CAGCAGA	-	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	CAGCAGA	CAGCAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PHPT1	NM_001135861	exon3	c.286_286del	p.96_96del	AACCACCAGCAGA	.	48	10	98	0	.	90	-	139744958	CAGCAGA	-	139744952	7	5	69	1	0	1	0	1	0	0	0	0	11860	609	21	0		0	PHPT1	9	139744952	Frame_Shift_Del	DEL	CAGCAGA	TCGA-DD-A39W-01A-11D-A20W-10		139744952	1468479	28	9431											
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71008284	71008284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HKDC1	NM_025130	exon10	c.C1370T	p.T457I	TGGTGACCGCGGT	.	115	52	110	0	.	95	T	71008284	C	T	71008284	3	4	69	1	0	0	0	0	1	0	0	0	7193	507	18	3	1408	3	HKDC1	10	71008284	Missense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10		71008284	64526463	29	9432											
KRTAP5-3	387266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1629410	1629410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KRTAP5-3	NM_001012708	exon1	c.C206A	p.S69Y	CCACAAGAGCCAC	.	239	34	237	0	.	92	T	1629410	G	T	1629410	3	4	69	1	0	0	0	0	1	0	0	0	8562	942	33	3	514	3	KRTAP5-3	11	1629410	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10		1629410	133377106	30	9433											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6648374	6648374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DCHS1	NM_003737	exon14	c.C5896T	p.R1966C	GTAGGCGCAGAGG	.	123	30	149	0	.	73	A	6648374	G	A	6648374	3	1	69	1	0	0	0	0	1	0	0	0	4287	1087	38	1	4032	1	DCHS1	11	6648374	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	5018964	6648374	128358142	31	9434											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10602112	10602112	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MRVI1	NM_130385	exon20	c.C2385T	p.T795T	TTCTTTGGTCTTC	.	59	5	87	0	.	25	A	10602112	G	A	10602112	2	1	69	1	0	0	0	0	0	0	0	1	9853	1335	47	3		3	MRVI1	11	10602112	Silent	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	3953738	10602112	124404404	32	9435											
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17428453	17428453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ABCC8	NM_000352	exon25	c.G3144T	p.R1048S	GCAGTTCCTGGCT	.	87	17	123	0	.	91	A	17428453	C	A	17428453	3	1	69	1	0	0	0	0	1	0	0	0	58	854	30	3	1661	3	ABCC8	11	17428453	Missense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	6826341	17428453	117578063	33	9436											
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	49229931	49229931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FOLH1	NM_004476	exon1	c.G31C	p.A11P	CCACAGCCGAGTC	.	42	21	45	0	.	579	G	49229931	C	G	49229931	3	3	69	1	0	0	0	0	1	0	0	0	5979	739	26	4	2297	4	FOLH1	11	49229931	Missense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	31801478	49229931	85776585	34	9437											
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117150670	117150670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RNF214	NM_207343	exon7	c.G1006A	p.E336K	GATGGCGAAATAA	.	61	21	81	0	.	90	A	117150670	G	A	117150670	3	1	69	1	0	0	0	0	1	0	0	0	13478	1059	37	1	1028	1	RNF214	11	117150670	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	67920739	117150670	17855846	35	9438											
GALNT6	11226	broad.mit.edu;bcgsc.ca	37	12	51758083	51758083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GALNT6	NM_007210	exon6	c.A871G	p.T291A	CCACTGTCTTGTC	.	130	6	198	1	.	92	C	51758083	T	C	51758083	3	2	69	1	0	0	0	0	1	0	0	0	6217	1667	58	2	1025	2	GALNT6	12	51758083	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		51758083	82093812	36	9439											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431424	121431424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HNF1A	NM_000545	exon3	c.T628A	p.S210T	CCAGCATCCCAGC	.	109	21	131	0	.	1745	A	121431424	T	A	121431424	3	1	69	1	0	0	0	0	1	0	0	0	7251	1435	50	4	638	4	HNF1A	12	121431424	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10	69673341	121431424	12420471	37	9440											
LHFP	10186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	40175212	40175212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LHFP	NM_005780	exon2	c.C142T	p.R48W	ACCTCCGGAAGGT	.	134	23	181	0	.	683	A	40175212	G	A	40175212	3	1	69	1	0	0	0	0	1	0	0	0	8763	1115	39	1	472	1	LHFP	13	40175212	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10		40175212	74994666	38	9441											
FANCM	57697	ucsc.edu;bcgsc.ca	37	14	45650690	45650690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FANCM	NM_020937	exon15	c.T4280C	p.V1427A	GAAAAGTTAAAAG	.	44	4	85	0	.	569	C	45650690	T	C	45650690	3	2	69	1	0	0	0	0	1	0	0	0	5671	1725	60	2	4338	2	FANCM	14	45650690	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		45650690	61698850	39	9442											
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	3085397	3085397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001103175	exon1	c.G101A	p.R34Q	GAGTCCCGCCGCT	.	87	37	97	0	.	.	T	3085397	C	T	3085397	3	4	69	1	0	0	0	0	1	0	0	0	2836	652	23	1	1461	1	CCDC64B	16	3085397	Missense_Mutation	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10		3085397	87269356	40	9443											
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67660509	67660509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CTCF	NM_006565	exon8	c.G1409A	p.R470H	AATGCCGTTACTG	.	98	31	130	0	.	91	A	67660509	G	A	67660509	3	1	69	1	0	0	0	0	1	0	0	0	4000	1145	40	1	1431	1	CTCF	16	67660509	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	64575112	67660509	22694244	41	9444											
YWHAE	7531	broad.mit.edu;bcgsc.ca	37	17	1265253	1265253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	YWHAE	NM_006761	exon3	c.A314G	p.D105G	TGTTTGTCCAGTA	.	78	6	95	0	.	659	C	1265253	T	C	1265253	3	2	69	1	0	0	0	0	1	0	0	0	17499	1667	58	2	469	2	YWHAE	17	1265253	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		1265253	79929957	42	9445											
TMEM95	339168	broad.mit.edu;bcgsc.ca	37	17	7259754	7259754	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TMEM95	NM_198154	exon6	c.C477T	p.I159I	CTCCATCTTCGGA	.	95	5	139	0	.	90	T	7259754	C	T	7259754	2	4	69	1	0	0	0	0	0	0	0	1	16220	903	32	3		3	TMEM95	17	7259754	Silent	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	5994501	7259754	73935456	43	9446											
LIG3	3980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33310396	33310396	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LIG3	NM_013975	exon2	c.C372T	p.P124P	GGTGCCCAATCCC	.	81	14	131	0	.	728	T	33310396	C	T	33310396	2	4	69	1	0	0	0	0	0	0	0	1	8782	581	21	3		3	LIG3	17	33310396	Silent	SNP	C	TCGA-DD-A39W-01A-11D-A20W-10	26050642	33310396	47884814	44	9447											
EME1	146956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48452910	48452910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	EME1	NM_152463	exon2	c.A341G	p.D114G	CTGAGGACTCTAG	.	121	55	181	1	.	227	G	48452910	A	G	48452910	3	3	69	1	0	0	0	0	1	0	0	0	5088	275	10	2	343	2	EME1	17	48452910	Missense_Mutation	SNP	A	TCGA-DD-A39W-01A-11D-A20W-10	15142514	48452910	32742300	45	9448											
FTSJ3	117246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61898837	61898837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FTSJ3	NM_017647	exon16	c.A1763G	p.Q588R	TCATCTTGGTACA	.	78	13	72	0	.	91	C	61898837	T	C	61898837	3	2	69	1	0	0	0	0	1	0	0	0	6089	1812	63	2	804	2	FTSJ3	17	61898837	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10	13445927	61898837	19296373	46	9449											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73723530	73723530	+	Missense_Mutation	SNP	G	G	A	rs137971337		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ITGB4	NM_001005731	exon4	c.G208A	p.A70T	CTGGCCGCGGGCT	.	132	36	155	0	G|1.000;A|0.000	227	A	73723530	G	A	73723530	3	1	69	1	0	0	0	0	1	0	0	0	7897	1087	38	1	218	1	ITGB4	17	73723530	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	11824693	73723530	7471680	47	9450											
CAPNS1	826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36637097	36637097	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CAPNS1	NM_001749	exon9	c.605-1G>C	.	ATCTTAGGGTTCC	.	57	7	88	0	.	90	C	36637097	G	C	36637097	5	2	69	1	0	0	0	0	0	0	1	0	2633	1014	35	4	634	4	CAPNS1	19	36637097	Splice_Site	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10		36637097	22491886	48	9451											
ZNF583	147949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56934521	56934521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ZNF583	NM_001159861	exon5	c.T494G	p.F165C	AAACATTCCACCA	.	42	17	39	0	.	91	G	56934521	T	G	56934521	3	3	69	1	0	0	0	0	1	0	0	0	18012	1783	62	5	508	5	ZNF583	19	56934521	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10	20297424	56934521	2194462	49	9452											
WFDC5	149708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	43743715	43743715	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	WFDC5	NM_145652	exon1	c.C10T	p.Q4X	GGCTCTGGGTCCT	.	36	7	42	0	.	91	A	43743715	G	A	43743715	4	1	69	1	0	0	0	0	0	1	0	0	17351	1357	47	3	377	3	WFDC5	20	43743715	Nonsense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10		43743715	19281805	50	9453											
GABPA	2551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	27141414	27141414	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GABPA	NM_001197297	exon10	c.G1236A	p.A412A	TGCAGCGGAGTTG	.	225	89	334	0	.	227	A	27141414	G	A	27141414	2	1	69	1	0	0	0	0	0	0	0	1	6157	1103	39	1		1	GABPA	21	27141414	Silent	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10		27141414	20988481	51	9454											
PPARA	5465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46611213	46611213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PPARA	NM_001001928	exon4	c.G352T	p.A118S	GTCCACGCGTGTG	.	80	27	119	0	.	611	T	46611213	G	T	46611213	3	4	69	1	0	0	0	0	1	0	0	0	12297	1087	38	1	358	1	PPARA	22	46611213	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10		46611213	4693353	52	9455											
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	20227476	20227476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RPS6KA3	NM_004586	exon3	c.A173T	p.E58V	TGTCCTTCCTTTA	.	102	33	177	0	.	1504	A	20227476	T	A	20227476	3	1	69	1	0	0	0	0	1	0	0	0	13652	1783	62	4	2129	4	RPS6KA3	23	20227476	Missense_Mutation	SNP	T	TCGA-DD-A39W-01A-11D-A20W-10		20227476	135043084	53	9456											
MSN	4478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	64955217	64955217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MSN	NM_002444	exon8	c.G884A	p.R295H	GCCGTCGCAAGCC	.	223	9	287	0	.	1086	A	64955217	G	A	64955217	3	1	69	1	0	0	0	0	1	0	0	0	9885	1087	38	1	914	1	MSN	23	64955217	Missense_Mutation	SNP	G	TCGA-DD-A39W-01A-11D-A20W-10	44727741	64955217	90315343	54	9457											
RIMKLA	284716	hgsc.bcm.edu;bcgsc.ca	37	1	42865162	42865162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RIMKLA	NM_173642	exon2	c.A251G	p.D84G	ACAGTGACATCAC	.	123	5	113	0	.	90	G	42865162	A	G	42865162	3	3	70	1	0	0	0	0	1	0	0	0	13365	275	10	2	257	2	RIMKLA	1	42865162	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		42865162	206385459	1	9458											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109793709	109793709	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CELSR2	NM_001408	exon1	c.C1008T	p.P336P	CAGCCCCTCTGAA	.	56	25	65	0	.	526	T	109793709	C	T	109793709	2	4	70	1	0	0	0	0	0	0	0	1	3222	668	24	3		3	CELSR2	1	109793709	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	66928547	109793709	139456912	2	9459											
ALX3	257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110607343	110607343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALX3	NM_006492	exon2	c.C460A	p.R154S	TACGACGCTTCTT	.	220	118	344	0	.	90	T	110607343	G	T	110607343	3	4	70	1	0	0	0	0	1	0	0	0	557	1087	38	1	583	1	ALX3	1	110607343	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	813634	110607343	138643278	3	9460											
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110919677	110919678	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1137_1138insAG	p.T379fs	CAGGTTAGTGATG	.	98	32	145	0	.	93	CT	110919678	-	CT	110919677	7	5	70	1	0	1	1	0	0	0	0	0	14410	407	15	0	338	0	SLC16A4	1	110919677	Frame_Shift_Ins	INS	-	TCGA-DD-A39X-01A-11D-A20W-10	312334	110919677	138330944	4	9461	53	2									
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110919678	110919679	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1136_1137insT	p.T379fs	AGGTTAGTGATGC	.	98	32	147	0	.	93	A	110919679	-	A	110919678	7	5	70	1	0	1	1	0	0	0	0	0	14410	1029	36	0	339	0	SLC16A4	1	110919678	Frame_Shift_Ins	INS	-	TCGA-DD-A39X-01A-11D-A20W-10	1	110919678	138330943	5	9462	53	2									
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149901687	149901687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MTMR11	NM_001145862	exon16	c.G1769A	p.R590H	AGCCAACGAGAAG	.	130	20	83	0	.	90	T	149901687	C	T	149901687	3	4	70	1	0	0	0	0	1	0	0	0	9940	536	19	1	407	1	MTMR11	1	149901687	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	38982009	149901687	99348934	6	9463											
FLG2	388698	broad.mit.edu;bcgsc.ca	37	1	152327807	152327807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLG2	NM_001014342	exon3	c.G2455A	p.G819S	CAAAGCCAGCGGA	.	319	15	120	1	.	151	T	152327807	C	T	152327807	3	4	70	1	0	0	0	0	1	0	0	0	5923	594	21	3	4724	3	FLG2	1	152327807	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	2426120	152327807	96922814	7	9464											
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153317700	153317700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PGLYRP4	NM_020393	exon4	c.C298T	p.R100W	GTTCCCGCAGTCT	.	107	10	65	0	.	94	A	153317700	G	A	153317700	3	1	70	1	0	0	0	0	1	0	0	0	11796	1086	38	1	847	1	PGLYRP4	1	153317700	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	989893	153317700	95932921	8	9465											
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158325665	158325665	+	Missense_Mutation	SNP	G	G	A	rs202212296		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CD1E	NM_001042584	exon4	c.G674A	p.R225H	CTGGCCGTCTGCA	.	503	38	284	0	G|0.999;A|0.000	93	A	158325665	G	A	158325665	3	1	70	1	0	0	0	0	1	0	0	0	2978	1145	40	1	688	1	CD1E	1	158325665	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	5007965	158325665	90924956	9	9466											
KCNT2	343450	hgsc.bcm.edu;bcgsc.ca	37	1	196295981	196295981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNT2	NM_198503	exon19	c.T2142C	p.Y714Y	GAATCCATAGGCT	.	78	4	89	0	.	159	G	196295981	A	G	196295981	2	3	70	1	0	0	0	0	0	0	0	1	8092	224	8	2		2	KCNT2	1	196295981	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	37970316	196295981	52954640	10	9467											
NFASC	23114	hgsc.bcm.edu;bcgsc.ca	37	1	204978736	204978736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFASC	NM_001005388	exon28	c.T3341C	p.L1114P	TTGGGCTTATGTG	.	60	5	67	0	.	139	C	204978736	T	C	204978736	3	2	70	1	0	0	0	0	1	0	0	0	10359	1609	56	2	3856	2	NFASC	1	204978736	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	8682755	204978736	44271885	11	9468											
HHIPL2	79802	hgsc.bcm.edu;bcgsc.ca	37	1	222712068	222712068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HHIPL2	NM_024746	exon5	c.T1499C	p.V500A	CCAGTGACTGACT	.	117	5	150	0	.	69	G	222712068	A	G	222712068	3	3	70	1	0	0	0	0	1	0	0	0	7094	275	10	2	695	2	HHIPL2	1	222712068	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	17733332	222712068	26538553	12	9469											
NVL	4931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224475603	224475603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NVL	NM_002533	exon14	c.C1668A	p.F556L	AACAATGAAATCA	.	108	26	163	0	.	92	T	224475603	G	T	224475603	3	4	70	1	0	0	0	0	1	0	0	0	10780	1281	45	3	942	3	NVL	1	224475603	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	1763535	224475603	24775018	13	9470											
WDR26	80232	hgsc.bcm.edu;bcgsc.ca	37	1	224588733	224588733	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR26	NM_025160	exon9	c.A1338G	p.E446E	ACTGTCTTCATGA	.	78	5	79	0	.	90	C	224588733	T	C	224588733	2	2	70	1	0	0	0	0	0	0	0	1	17280	1606	56	2		2	WDR26	1	224588733	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	113130	224588733	24661888	14	9471											
OSR1	130497	hgsc.bcm.edu;bcgsc.ca	37	2	19552914	19552914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OSR1	NM_145260	exon2	c.T653C	p.L218P	TCTCGCAGGTGGT	.	59	4	78	0	.	257	G	19552914	A	G	19552914	3	3	70	1	0	0	0	0	1	0	0	0	11293	188	7	2	155	2	OSR1	2	19552914	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		19552914	223646459	15	9472											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37455988	37455988	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEBPZ	NM_005760	exon2	c.A348G	p.K116K	TACTTCTTTTTTG	.	41	5	36	0	.	91	C	37455988	T	C	37455988	2	2	70	1	0	0	0	0	0	0	0	1	3204	1606	56	2		2	CEBPZ	2	37455988	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	17903074	37455988	205743385	16	9473											
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135170467	135170467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MGAT5	NM_002410	exon12	c.G1558A	p.E520K	CCTTACGAGGGCC	.	231	28	250	0	.	93	A	135170467	G	A	135170467	3	1	70	1	0	0	0	0	1	0	0	0	9548	1059	37	1	1604	1	MGAT5	2	135170467	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	97714479	135170467	108028906	17	9474											
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179506015	179506015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TTN	NM_001267550	exon220	c.A40586G	p.E13529G	TTAGGTTCTTCTT	.	67	4	83	0	.	636	C	179506015	T	C	179506015	3	2	70	1	0	0	0	0	1	0	0	0	16732	1783	62	2	67679	2	TTN	2	179506015	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	44335548	179506015	63693358	18	9475											
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197634689	197634689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF3C3	NM_012086	exon16	c.C2335T	p.H779Y	CCATATGAATAAA	.	90	17	99	0	.	97	A	197634689	G	A	197634689	3	1	70	1	0	0	0	0	1	0	0	0	6874	1290	45	3	337	3	GTF3C3	2	197634689	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	18128674	197634689	45564684	19	9476											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220333960	220333960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPEG	NM_005876	exon13	c.C3574T	p.R1192W	TTCCTGCGGCCAC	.	169	58	174	0	.	383	T	220333960	C	T	220333960	3	4	70	1	0	0	0	0	1	0	0	0	15035	759	27	1	3636	1	SPEG	2	220333960	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	22699271	220333960	22865413	20	9477											
NKIRAS1	28512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942421	23942421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.C214G	p.P72A	GCTTTGGCAGCTC	.	155	19	130	0	.	659	C	23942421	G	C	23942421	3	2	70	1	0	0	0	0	1	0	0	0	10444	1203	42	4	372	4	NKIRAS1	3	23942421	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10		23942421	174080009	21	9478	54	2									
NKIRAS1	28512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942422	23942422	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.G213T	p.L71L	CTTTGGCAGCTCC	.	156	19	133	1	.	659	A	23942422	C	A	23942422	2	1	70	1	0	0	0	0	0	0	0	1	10444	697	25	3		3	NKIRAS1	3	23942422	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	1	23942422	174080008	22	9479	54	2									
STXBP5L	9515	hgsc.bcm.edu;bcgsc.ca	37	3	120941904	120941904	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5L	NM_014980	exon11	c.A1011G	p.R337R	TAGAAGACCAAGT	.	114	5	132	0	.	77	G	120941904	A	G	120941904	2	3	70	1	0	0	0	0	0	0	0	1	15356	272	10	2		2	STXBP5L	3	120941904	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	96999482	120941904	77080526	23	9480											
WDR19	57728	hgsc.bcm.edu;bcgsc.ca	37	4	39191330	39191330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR19	NM_025132	exon4	c.T219C	p.A73A	GATTGCTGAGAAA	.	103	5	152	0	.	67	C	39191330	T	C	39191330	2	2	70	1	0	0	0	0	0	0	0	1	17276	1567	55	2		2	WDR19	4	39191330	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		39191330	151962946	24	9481											
UGT2B28	54490	broad.mit.edu;ucsc.edu	37	4	70160274	70160274	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UGT2B28	NM_053039	exon6	c.C1337G	p.S446X	AATTATCAATAAT	.	63	11	72	0	.	91	G	70160274	C	G	70160274	4	3	70	1	0	0	0	0	0	1	0	0	16957	838	29	4	1359	4	UGT2B28	4	70160274	Nonsense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	30968944	70160274	120994002	25	9482											
GRSF1	2926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71691022	71691022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_002092	exon8	c.T1384C	p.S462P	CGTGGGACCGATC	.	81	5	154	0	.	.	G	71691022	A	G	71691022	3	3	70	1	0	0	0	0	1	0	0	0	6809	275	10	2	66	2	GRSF1	4	71691022	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	1530748	71691022	119463254	26	9483											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283258	74283259	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALB	NM_000477	exon11	c.1300_1301del	p.434_434del	TTAGTTCGTTACA	.	97	15	105	0	.	96	-	74283259	CG	-	74283258	7	5	70	1	0	1	0	1	0	0	0	0	486	884	31	0	1342	0	ALB	4	74283258	Frame_Shift_Del	DEL	CG	TCGA-DD-A39X-01A-11D-A20W-10	2592236	74283258	116871018	27	9484											
NAAA	27163	hgsc.bcm.edu;bcgsc.ca	37	4	76861242	76861242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAAA	NM_014435	exon2	c.T283C	p.F95L	CGGTGAAGGGCTG	.	105	5	132	0	.	91	G	76861242	A	G	76861242	3	3	70	1	0	0	0	0	1	0	0	0	10127	72	3	2	839	2	NAAA	4	76861242	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	2577984	76861242	114293034	28	9485											
METAP1	23173	hgsc.bcm.edu;bcgsc.ca	37	4	99960538	99960538	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_015143	exon5	c.T354C	p.S118S	TGAATCTGAACAG	.	75	4	72	0	.	.	C	99960538	T	C	99960538	2	2	70	1	0	0	0	0	0	0	0	1	9486	1567	55	2		2	METAP1	4	99960538	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	23099296	99960538	91193738	29	9486											
NDST4	64579	hgsc.bcm.edu;bcgsc.ca	37	4	115856381	115856381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NDST4	NM_022569	exon6	c.T1517C	p.L506P	ATTGTGAGAAAAA	.	82	4	140	0	.	94	G	115856381	A	G	115856381	3	3	70	1	0	0	0	0	1	0	0	0	10258	304	11	2	1137	2	NDST4	4	115856381	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	15895843	115856381	75297895	30	9487											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126238284	126238284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAT4	NM_024582	exon1	c.G718T	p.V240L	GTGACTGTGCAAG	.	98	8	138	0	.	108	T	126238284	G	T	126238284	3	4	70	1	0	0	0	0	1	0	0	0	5692	1377	48	3	720	3	FAT4	4	126238284	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	10381903	126238284	64915992	31	9488											
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148778702	148778702	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARHGAP10	NM_024605	exon5	c.385-2A>G	.	ATTTGTAGGAAGA	.	38	17	43	0	.	229	G	148778702	A	G	148778702	5	3	70	1	0	0	0	0	0	0	1	0	862	434	15	2	401	2	ARHGAP10	4	148778702	Splice_Site	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	22540418	148778702	42375574	32	9489											
LRBA	987	hgsc.bcm.edu;bcgsc.ca	37	4	151727552	151727552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRBA	NM_006726	exon33	c.A5389G	p.T1797A	TCTCTGTAATACT	.	70	4	97	0	.	157	C	151727552	T	C	151727552	3	2	70	1	0	0	0	0	1	0	0	0	8931	1638	57	2	3306	2	LRBA	4	151727552	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	2948850	151727552	39426724	33	9490											
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54570765	54570765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DHX29	NM_019030	exon15	c.A2501G	p.Q834R	GCATGCTGAGTGC	.	79	16	109	0	.	229	C	54570765	T	C	54570765	3	2	70	1	0	0	0	0	1	0	0	0	4503	1580	55	2	1660	2	DHX29	5	54570765	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		54570765	126344495	34	9491											
CWC27	10283	hgsc.bcm.edu;bcgsc.ca	37	5	64079686	64079686	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CWC27	NM_005869	exon4	c.T276C	p.R92R	GTTGCGTTTTAAT	.	91	4	62	0	.	90	C	64079686	T	C	64079686	2	2	70	1	0	0	0	0	0	0	0	1	4070	1712	60	2		2	CWC27	5	64079686	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	9508921	64079686	116835574	35	9492											
COL4A3BP	10087	hgsc.bcm.edu;bcgsc.ca	37	5	74685511	74685511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COL4A3BP	NM_001130105	exon13	c.T1574C	p.V525A	TCTTCAACCTTGA	.	77	4	93	0	.	226	G	74685511	A	G	74685511	3	3	70	1	0	0	0	0	1	0	0	0	3692	57	2	2	708	2	COL4A3BP	5	74685511	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	10605825	74685511	106229749	36	9493											
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86659274	86659274	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RASA1	NM_002890	exon11	c.T1563C	p.D521D	AATAGATCTCAGT	.	69	4	83	0	.	661	C	86659274	T	C	86659274	2	2	70	1	0	0	0	0	0	0	0	1	13060	1432	50	2		2	RASA1	5	86659274	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	11973763	86659274	94255986	37	9494											
CCNH	902	hgsc.bcm.edu;bcgsc.ca	37	5	86703825	86703825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCNH	NM_001239	exon4	c.A493G	p.R165G	ATGGTCTGTAAGG	.	82	4	96	0	.	441	C	86703825	T	C	86703825	3	2	70	1	0	0	0	0	1	0	0	0	2925	1588	55	2	502	2	CCNH	5	86703825	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	44551	86703825	94211435	38	9495											
PCDHGA1	56114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140712536	140712536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHGA1	NM_018912	exon1	c.A2285G	p.D762G	CTGCGGACTCGCG	.	262	53	275	2	.	137	G	140712536	A	G	140712536	3	3	70	1	0	0	0	0	1	0	0	0	11550	275	10	2	2287	2	PCDHGA1	5	140712536	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	54008711	140712536	40202724	39	9496											
PCDHGB3	56102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140750845	140750845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_018924	exon1	c.A884G	p.D295G	AGCTGGACAGTAA	.	98	32	85	0	.	.	G	140750845	A	G	140750845	3	3	70	1	0	0	0	0	1	0	0	0	11564	275	10	2	886	2	PCDHGB3	5	140750845	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	38309	140750845	40164415	40	9497											
ACOT13	55856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24698153	24698153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACOT13	NM_018473	exon2	c.A124G	p.M42V	TGTGAAATGAAAG	.	90	34	103	0	.	90	G	24698153	A	G	24698153	3	3	70	1	0	0	0	0	1	0	0	0	151	101	4	2	146	2	ACOT13	6	24698153	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		24698153	146416914	41	9498											
SLC17A2	10246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25917214	25917214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC17A2	NM_005835	exon7	c.T751C	p.S251P	GTGAGGACAGGAT	.	91	26	88	1	.	91	G	25917214	A	G	25917214	3	3	70	1	0	0	0	0	1	0	0	0	14417	275	10	2	579	2	SLC17A2	6	25917214	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	1219061	25917214	145197853	42	9499											
CUL9	23113	hgsc.bcm.edu;bcgsc.ca	37	6	43153709	43153709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUL9	NM_015089	exon4	c.T767C	p.L256P	AGCTGCTTTTCTC	.	111	6	96	0	.	529	C	43153709	T	C	43153709	3	2	70	1	0	0	0	0	1	0	0	0	4061	1609	56	2	777	2	CUL9	6	43153709	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	17236495	43153709	127961358	43	9500											
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72003034	72003034	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OGFRL1	NM_024576	exon2	c.A273G	p.R91R	AAAGAGAAGTTTT	.	143	22	127	0	.	68	G	72003034	A	G	72003034	2	3	70	1	0	0	0	0	0	0	0	1	10844	243	9	2		2	OGFRL1	6	72003034	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	28849325	72003034	99112033	44	9501											
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90461216	90461216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDN1	NM_014611	exon23	c.A3161G	p.E1054G	TACGTCTCATCTA	.	109	5	164	0	.	100	C	90461216	T	C	90461216	3	2	70	1	0	0	0	0	1	0	0	0	9415	1551	54	2	13949	2	MDN1	6	90461216	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	18458182	90461216	80653851	45	9502											
UTRN	7402	hgsc.bcm.edu;bcgsc.ca	37	6	144801024	144801024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UTRN	NM_007124	exon25	c.A3413G	p.Q1138R	AGATGCAGGAATG	.	50	5	55	0	.	95	G	144801024	A	G	144801024	3	3	70	1	0	0	0	0	1	0	0	0	17100	188	7	2	3511	2	UTRN	6	144801024	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	54339808	144801024	26314043	46	9503											
STXBP5	134957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147680286	147680286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5	NM_001127715	exon23	c.G2372T	p.R791L	AATCCCGAGAAGC	.	58	24	92	0	.	90	T	147680286	G	T	147680286	3	4	70	1	0	0	0	0	1	0	0	0	15355	1058	37	1	2462	1	STXBP5	6	147680286	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	2879262	147680286	23434781	47	9504											
EZR	7430	hgsc.bcm.edu;bcgsc.ca	37	6	159190397	159190397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EZR	NM_003379	exon11	c.G1305A	p.R435R	GCGCCTCCGCGCC	.	34	4	45	0	.	70	T	159190397	C	T	159190397	2	4	70	1	0	0	0	0	0	0	0	1	5335	842	30	3		3	EZR	6	159190397	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	11510111	159190397	11924670	48	9505											
MAP3K4	4216	hgsc.bcm.edu;bcgsc.ca	37	6	161455479	161455479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAP3K4	NM_006724	exon2	c.A341G	p.K114R	ATTTGAAAGGTGA	.	67	4	104	0	.	548	G	161455479	A	G	161455479	3	3	70	1	0	0	0	0	1	0	0	0	9252	14	1	2	347	2	MAP3K4	6	161455479	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	2265082	161455479	9659588	49	9506											
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16640522	16640522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKMY2	NM_020319	exon10	c.A1190T	p.E397V	TCAGCCTCTGGTT	.	65	21	63	0	.	514	A	16640522	T	A	16640522	3	1	70	1	0	0	0	0	1	0	0	0	635	1551	54	4	139	4	ANKMY2	7	16640522	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		16640522	142498141	50	9507											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24749890	24749890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DFNA5	NM_001127453	exon6	c.C815G	p.A272G	CCATGCGCAGCAT	.	67	13	59	0	.	91	C	24749890	G	C	24749890	3	2	70	1	0	0	0	0	1	0	0	0	4454	1087	38	4	695	4	DFNA5	7	24749890	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	8109368	24749890	134388773	51	9508											
AVL9	23080	hgsc.bcm.edu;bcgsc.ca	37	7	32590989	32590989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AVL9	NM_015060	exon5	c.A416G	p.H139R	TTACACATGCATA	.	68	4	85	0	.	90	G	32590989	A	G	32590989	3	3	70	1	0	0	0	0	1	0	0	0	1228	217	8	2	434	2	AVL9	7	32590989	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	7841099	32590989	126547674	52	9509											
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44150363	44150363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AEBP1	NM_001129	exon12	c.T1440A	p.N480K	CAGCAATGACAGC	.	92	27	119	0	.	90	A	44150363	T	A	44150363	3	1	70	1	0	0	0	0	1	0	0	0	349	1461	51	4	1486	4	AEBP1	7	44150363	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	11559374	44150363	114988300	53	9510											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92952972	92952972	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCDC132	NM_017667	exon21	c.T1905A	p.V635V	TGATGTTATTCAT	.	39	9	59	0	.	90	A	92952972	T	A	92952972	2	1	70	1	0	0	0	0	0	0	0	1	2767	1741	61	4		4	CCDC132	7	92952972	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	48802609	92952972	66185691	54	9511											
DLD	1738	hgsc.bcm.edu;bcgsc.ca	37	7	107533711	107533711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DLD	NM_000108	exon2	c.G106A	p.A36T	ACTTACGCAGATC	.	65	4	78	0	.	226	A	107533711	G	A	107533711	3	1	70	1	0	0	0	0	1	0	0	0	4551	1087	38	1	112	1	DLD	7	107533711	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	14580739	107533711	51604952	55	9512											
KIAA2026	158358	hgsc.bcm.edu;bcgsc.ca	37	9	5920644	5920644	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA2026	NM_001017969	exon8	c.T5352C	p.T1784T	GAGTGAAGTCCGA	.	89	5	140	0	.	92	G	5920644	A	G	5920644	2	3	70	1	0	0	0	0	0	0	0	1	8270	59	3	2		2	KIAA2026	9	5920644	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		5920644	135292787	56	9513											
IFNA7	3444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21201807	21201807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNA7	NM_021057	exon1	c.G358A	p.E120K	ATGCTTCCAGGTC	.	370	107	477	0	.	90	T	21201807	C	T	21201807	3	4	70	1	0	0	0	0	1	0	0	0	7542	864	30	3	215	3	IFNA7	9	21201807	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	15281163	21201807	120011624	57	9514											
C9orf72	203228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27548315	27548315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C9orf72	NM_018325	exon11	c.T1365G	p.I455M	TGGTTTAATTTTC	.	61	15	64	0	.	517	C	27548315	A	C	27548315	3	2	70	1	0	0	0	0	1	0	0	0	2495	358	13	5	84	5	C9orf72	9	27548315	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	6346508	27548315	113665116	58	9515											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113169740	113169740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SVEP1	NM_153366	exon38	c.T8140C	p.S2714P	CAATTGAAATGCA	.	131	7	109	0	.	75	G	113169740	A	G	113169740	3	3	70	1	0	0	0	0	1	0	0	0	15417	246	9	2	2619	2	SVEP1	9	113169740	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	85621425	113169740	28043691	59	9516											
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123738976	123738976	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C5	NM_001735	exon30	c.3864+2T>C	.	AATGTTACCTGGG	.	80	4	95	0	.	92	G	123738976	A	G	123738976	5	3	70	1	0	0	0	0	0	0	1	0	2280	405	14	2	1216	2	C5	9	123738976	Splice_Site	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	10569236	123738976	17474455	60	9517											
RAB14	51552	hgsc.bcm.edu;bcgsc.ca	37	9	123952841	123952841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RAB14	NM_016322	exon4	c.A275G	p.D92G	GTGATATCATAGA	.	70	4	72	0	.	227	C	123952841	T	C	123952841	3	2	70	1	0	0	0	0	1	0	0	0	12900	1435	50	2	392	2	RAB14	9	123952841	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	213865	123952841	17260590	61	9518											
OR1L6	392390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125512279	125512279	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR1L6	NM_001004453	exon1	c.C153T	p.Y51Y	CATCTACTCTGAC	.	228	45	311	0	.	68	T	125512279	C	T	125512279	2	4	70	1	0	0	0	0	0	0	0	1	10966	576	20	3		3	OR1L6	9	125512279	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	1559438	125512279	15701152	62	9519											
HSPA5	3309	hgsc.bcm.edu;bcgsc.ca	37	9	128000515	128000515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSPA5	NM_005347	exon7	c.T1307C	p.L436P	GGAATCAGTTTGG	.	69	4	77	0	.	230	G	128000515	A	G	128000515	3	3	70	1	0	0	0	0	1	0	0	0	7414	188	7	2	665	2	HSPA5	9	128000515	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	2488236	128000515	13212916	63	9520											
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139244074	139244074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPSM1	NM_001145638	exon11	c.G1314A	p.W438X	GGACTGGCGGGGG	.	86	30	115	0	.	90	A	139244074	G	A	139244074	4	1	70	1	0	0	0	0	0	1	0	0	6734	1212	42	3	1523	3	GPSM1	9	139244074	Nonsense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	11243559	139244074	1969357	64	9521											
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	50690818	50690818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ERCC6	NM_000124	exon10	c.G2084T	p.C695F	AACTTTCCCGGGA	.	77	6	95	0	.	1153	A	50690818	C	A	50690818	3	1	70	1	0	0	0	0	1	0	0	0	5217	855	30	3	2445	3	ERCC6	10	50690818	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10		50690818	84843929	65	9522											
KCNMA1	3778	hgsc.bcm.edu;bcgsc.ca	37	10	78832856	78832856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNMA1	NM_002247	exon14	c.A1748G	p.K583R	GTTACCTTTATGA	.	99	5	124	0	.	93	C	78832856	T	C	78832856	3	2	70	1	0	0	0	0	1	0	0	0	8073	1623	56	2	2194	2	KCNMA1	10	78832856	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	28142038	78832856	56701891	66	9523											
POLR3A	11128	hgsc.bcm.edu;bcgsc.ca	37	10	79752965	79752965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	POLR3A	NM_007055	exon20	c.A2777G	p.D926G	ATGTTGTCCAGAA	.	57	4	76	0	.	90	C	79752965	T	C	79752965	3	2	70	1	0	0	0	0	1	0	0	0	12228	1667	58	2	1443	2	POLR3A	10	79752965	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	920109	79752965	55781782	67	9524											
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88459081	88459081	+	Missense_Mutation	SNP	C	C	T	rs121908335		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDB3	NM_001171611	exon8	c.C1147T	p.R383C	AAATTGCGCAACT	.	104	19	72	0	.	92	T	88459081	C	T	88459081	3	4	70	1	0	0	0	0	1	0	0	0	8697	768	27	1	1204	1	LDB3	10	88459081	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	8706116	88459081	47075666	68	9525											
ATAD1	84896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89550120	89550120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATAD1	NM_032810	exon4	c.C329T	p.P110L	TTGATAGGTAAGA	.	79	25	80	0	.	578	A	89550120	G	A	89550120	3	1	70	1	0	0	0	0	1	0	0	0	1070	1000	35	3	784	3	ATAD1	10	89550120	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	1091039	89550120	45984627	69	9526											
CYP2C18	1562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	96447910	96447910	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYP2C18	NM_000772	exon3	c.G360A	p.W120X	GAGATGGAAGGAG	.	187	57	240	0	.	95	A	96447910	G	A	96447910	4	1	70	1	0	0	0	0	0	1	0	0	4165	1183	41	3	370	3	CYP2C18	10	96447910	Nonsense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	6897790	96447910	39086837	70	9527											
CNNM2	54805	hgsc.bcm.edu;bcgsc.ca	37	10	104679481	104679481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNNM2	NM_199076	exon1	c.T1244C	p.L415P	AACTGCTGGAGAT	.	61	4	38	0	.	515	C	104679481	T	C	104679481	3	2	70	1	0	0	0	0	1	0	0	0	3613	1580	55	2	1246	2	CNNM2	10	104679481	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	8231571	104679481	30855266	71	9528											
CUZD1	50624	hgsc.bcm.edu;bcgsc.ca	37	10	124595749	124595749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUZD1	NM_022034	exon6	c.T935C	p.L312S	TTTGATAATTTTG	.	94	4	129	0	.	92	G	124595749	A	G	124595749	3	3	70	1	0	0	0	0	1	0	0	0	4066	372	13	2	904	2	CUZD1	10	124595749	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	19916268	124595749	10938998	72	9529											
KRTAP5-1	387264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1606421	1606421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRTAP5-1	NM_001005922	exon1	c.G59C	p.G20A	CCACAGCCGGAGC	.	147	62	190	0	.	44	G	1606421	C	G	1606421	3	3	70	1	0	0	0	0	1	0	0	0	8558	739	26	4	781	4	KRTAP5-1	11	1606421	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10		1606421	133400095	73	9530											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20066708	20066708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAV2	NM_001244963	exon15	c.C3463G	p.L1155V	GCCGGCCTGGCCA	.	54	12	78	0	.	96	G	20066708	C	G	20066708	3	3	70	1	0	0	0	0	1	0	0	0	10184	680	24	4	3557	4	NAV2	11	20066708	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	18460287	20066708	114939808	74	9531											
ANO3	63982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	26664762	26664762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO3	NM_031418	exon23	c.C2309T	p.A770V	TTGTTGCGGCTTT	.	137	41	171	0	.	93	T	26664762	C	T	26664762	3	4	70	1	0	0	0	0	1	0	0	0	698	768	27	1	2399	1	ANO3	11	26664762	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	6598054	26664762	108341754	75	9532											
FBXO3	26273	hgsc.bcm.edu;bcgsc.ca	37	11	33790501	33790501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FBXO3	NM_012175	exon3	c.A254G	p.D85G	CCTACATCAGAGT	.	64	4	110	0	.	227	C	33790501	T	C	33790501	3	2	70	1	0	0	0	0	1	0	0	0	5739	1435	50	2	1206	2	FBXO3	11	33790501	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	7125739	33790501	101216015	76	9533											
OR5A1	219982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59211305	59211305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR5A1	NM_001004728	exon1	c.G664T	p.G222C	TCCTATGGTTACA	.	135	24	201	0	.	69	T	59211305	G	T	59211305	3	4	70	1	0	0	0	0	1	0	0	0	11139	1348	47	3	666	3	OR5A1	11	59211305	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	25420804	59211305	75795211	77	9534											
SNX32	254122	hgsc.bcm.edu;bcgsc.ca	37	11	65618862	65618862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SNX32	NM_152760	exon8	c.A773G	p.N258S	AAGTCAACCAGCT	.	51	4	65	0	.	68	G	65618862	A	G	65618862	3	3	70	1	0	0	0	0	1	0	0	0	14902	43	2	2	803	2	SNX32	11	65618862	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	6407557	65618862	69387654	78	9535											
GAL	51083	hgsc.bcm.edu;bcgsc.ca	37	11	68453108	68453108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GAL	NM_015973	exon3	c.T128C	p.L43P	ACCTGCTGGGCCC	.	60	4	65	0	.	90	C	68453108	T	C	68453108	3	2	70	1	0	0	0	0	1	0	0	0	6196	1580	55	2	134	2	GAL	11	68453108	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	2834246	68453108	66553408	79	9536											
ALKBH8	91801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	107403057	107403057	+	Missense_Mutation	SNP	T	T	C	rs202093339	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALKBH8	NM_138775	exon8	c.A847G	p.T283A	CTCCTGTCATCAC	.	174	7	188	0	T|0.999;A|0.000	68	C	107403057	T	C	107403057	3	2	70	1	0	0	0	0	1	0	0	0	533	1667	58	2	1167	2	ALKBH8	11	107403057	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	38949949	107403057	27603459	80	9537											
ATN1	1822	hgsc.bcm.edu;bcgsc.ca	37	12	7050122	7050122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATN1	NM_001007026	exon8	c.T3294C	p.T1098T	TGGAACTCTCCCT	.	65	5	103	0	.	139	C	7050122	T	C	7050122	2	2	70	1	0	0	0	0	0	0	0	1	1111	1538	54	2		2	ATN1	12	7050122	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		7050122	126801773	81	9538											
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53039093	53039093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRT2	NM_000423	exon9	c.C1630T	p.R544X	ACTGTCGGCCTCC	.	67	13	74	0	.	92	A	53039093	G	A	53039093	4	1	70	1	0	0	0	0	0	1	0	0	8457	1124	39	1	293	1	KRT2	12	53039093	Nonsense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	45988971	53039093	80812802	82	9539											
ITGA7	3679	hgsc.bcm.edu;bcgsc.ca	37	12	56091488	56091488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA7	NM_001144996	exon9	c.T1412C	p.V471A	AAGAGCACTGCGG	.	52	4	86	0	.	229	G	56091488	A	G	56091488	3	3	70	1	0	0	0	0	1	0	0	0	7881	159	6	2	2081	2	ITGA7	12	56091488	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	3052395	56091488	77760407	83	9540											
MRPS31	10240	hgsc.bcm.edu;bcgsc.ca	37	13	41323319	41323319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRPS31	NM_005830	exon6	c.A913G	p.T305A	CTTTTGTCCACTG	.	67	4	146	0	.	226	C	41323319	T	C	41323319	3	2	70	1	0	0	0	0	1	0	0	0	9841	1667	58	2	282	2	MRPS31	13	41323319	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		41323319	73846559	84	9541											
SLC25A30	253512	hgsc.bcm.edu;bcgsc.ca	37	13	45978525	45978525	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC25A30	NM_001010875	exon5	c.G330A	p.V110V	ACATATCACATTT	.	42	4	85	0	.	135	T	45978525	C	T	45978525	2	4	70	1	0	0	0	0	0	0	0	1	14494	813	29	3		3	SLC25A30	13	45978525	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	4655206	45978525	69191353	85	9542											
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21699222	21699222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HNRNPC	NM_001077443	exon3	c.T251G	p.L84R	GCAGCCAGGTTAA	.	60	14	64	0	.	90	C	21699222	A	C	21699222	3	2	70	1	0	0	0	0	1	0	0	0	7262	188	7	5	693	5	HNRNPC	14	21699222	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		21699222	85650318	86	9543											
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24729674	24729674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TGM1	NM_000359	exon4	c.T739C	p.F247L	GGTTGAAGAGGAT	.	57	21	89	0	.	91	G	24729674	A	G	24729674	3	3	70	1	0	0	0	0	1	0	0	0	15826	72	3	2	1762	2	TGM1	14	24729674	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	3030452	24729674	82619866	87	9544											
KLHL28	54813	hgsc.bcm.edu;bcgsc.ca	37	14	45414969	45414969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHL28	NM_017658	exon2	c.A163G	p.S55G	TGACGCTGGCAAG	.	85	5	115	0	.	91	C	45414969	T	C	45414969	3	2	70	1	0	0	0	0	1	0	0	0	8382	1580	55	2	1568	2	KLHL28	14	45414969	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	20685295	45414969	61934571	88	9545											
DAAM1	23002	hgsc.bcm.edu;bcgsc.ca	37	14	59793328	59793328	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DAAM1	NM_001270520	exon11	c.A1275G	p.T425T	CTCCACACCTTTG	.	145	6	210	0	.	227	G	59793328	A	G	59793328	2	3	70	1	0	0	0	0	0	0	0	1	4215	146	6	2		2	DAAM1	14	59793328	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	14378359	59793328	47556212	89	9546											
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105407781	105407781	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AHNAK2	NM_138420	exon7	c.A14007G	p.E4669E	AACAGATTCCACA	.	74	4	124	0	.	47	C	105407781	T	C	105407781	2	2	70	1	0	0	0	0	0	0	0	1	415	1490	52	2		2	AHNAK2	14	105407781	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	45614453	105407781	1941759	90	9547											
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42742306	42742306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFP106	NM_022473	exon2	c.T2095G	p.L699V	CATCCAAGCTAGC	.	106	26	104	0	.	515	C	42742306	A	C	42742306	3	2	70	1	0	0	0	0	1	0	0	0	17634	69	3	5	3628	5	ZFP106	15	42742306	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		42742306	59789086	91	9548											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48056059	48056059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA6D	NM_153617	exon10	c.C760T	p.R254C	TATTCCCGCGTGG	.	116	37	125	0	.	138	T	48056059	C	T	48056059	3	4	70	1	0	0	0	0	1	0	0	0	14042	652	23	1	794	1	SEMA6D	15	48056059	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	5313753	48056059	54475333	92	9549											
CEP152	22995	hgsc.bcm.edu;bcgsc.ca	37	15	49083508	49083508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP152	NM_014985	exon8	c.A898G	p.R300G	TCTCTCTTTCTTT	.	72	4	101	0	.	70	C	49083508	T	C	49083508	3	2	70	1	0	0	0	0	1	0	0	0	3248	1617	56	2	4142	2	CEP152	15	49083508	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	1027449	49083508	53447884	93	9550											
GLCE	26035	hgsc.bcm.edu;bcgsc.ca	37	15	69553621	69553621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GLCE	NM_015554	exon4	c.T782C	p.V261A	CGAATGTGGCTGA	.	90	4	125	0	.	92	C	69553621	T	C	69553621	3	2	70	1	0	0	0	0	1	0	0	0	6432	1696	59	2	788	2	GLCE	15	69553621	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	20470113	69553621	32977771	94	9551											
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74709008	74709008	+	Missense_Mutation	SNP	C	C	T	rs140707085		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA7A	NM_003612	exon7	c.G709A	p.D237N	TGTCATCGTAAGC	.	248	19	315	0	C|1.000;T|0.000	153	T	74709008	C	T	74709008	3	4	70	1	0	0	0	0	1	0	0	0	14043	884	31	1	1323	1	SEMA7A	15	74709008	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	5155387	74709008	27822384	95	9552											
TBC1D2B	23102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	78305187	78305187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBC1D2B	NM_144572	exon9	c.G2248C	p.G750R	AGTAGCCGATATC	.	232	16	234	0	.	136	G	78305187	C	G	78305187	3	3	70	1	0	0	0	0	1	0	0	0	15616	652	23	4	663	4	TBC1D2B	15	78305187	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	3596179	78305187	24226205	96	9553											
HS3ST6	64711	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1961778	1961778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001009606	exon2	c.A749G	p.N250S	GTGGCGTTGAAGT	.	116	27	172	1	.	.	C	1961778	T	C	1961778	3	2	70	1	0	0	0	0	1	0	0	0	7369	1725	60	2	190	2	HS3ST6	16	1961778	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		1961778	88392975	97	9554											
DCTN5	84516	hgsc.bcm.edu;bcgsc.ca	37	16	23654296	23654296	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DCTN5	NM_001199011	exon2	c.T69C	p.S23S	AGTCAGTCGCCAG	.	64	4	73	0	.	226	C	23654296	T	C	23654296	2	2	70	1	0	0	0	0	0	0	0	1	4310	1664	58	2		2	DCTN5	16	23654296	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	21692518	23654296	66700457	98	9555											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61687550	61687550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH8	NM_001796	exon12	c.G2362A	p.E788K	AGAGTTCGCCCAG	.	138	30	179	0	.	161	T	61687550	C	T	61687550	3	4	70	1	0	0	0	0	1	0	0	0	3116	893	31	1	41	1	CDH8	16	61687550	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	38033254	61687550	28667203	99	9556											
NFAT5	10725	hgsc.bcm.edu;bcgsc.ca	37	16	69718852	69718852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFAT5	NM_138713	exon11	c.T1753C	p.S585P	CCTTGCTCTTTTG	.	103	5	103	0	.	90	C	69718852	T	C	69718852	3	2	70	1	0	0	0	0	1	0	0	0	10360	1551	54	2	1795	2	NFAT5	16	69718852	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	8031302	69718852	20635901	100	9557											
CNTNAP4	85445	hgsc.bcm.edu;bcgsc.ca	37	16	76523688	76523688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNTNAP4	NM_138994	exon12	c.T1769C	p.M590T	CCAGCATGGAGCA	.	109	5	145	0	.	70	C	76523688	T	C	76523688	3	2	70	1	0	0	0	0	1	0	0	0	3649	1464	51	2	2051	2	CNTNAP4	16	76523688	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	6804836	76523688	13831065	101	9558											
ZNF232	7775	hgsc.bcm.edu;bcgsc.ca	37	17	5009622	5009622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF232	NM_014519	exon5	c.T832C	p.W278R	GGGACCACCTCAG	.	78	4	80	0	.	154	G	5009622	A	G	5009622	3	3	70	1	0	0	0	0	1	0	0	0	17782	159	6	2	506	2	ZNF232	17	5009622	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		5009622	76185588	102	9559											
RABEP1	9135	hgsc.bcm.edu;bcgsc.ca	37	17	5235279	5235279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RABEP1	NM_004703	exon3	c.G199A	p.A67T	CAAGCTGCACAAG	.	41	4	38	0	.	659	A	5235279	G	A	5235279	3	1	70	1	0	0	0	0	1	0	0	0	12961	1319	46	3	209	3	RABEP1	17	5235279	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	225657	5235279	75959931	103	9560											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11757692	11757692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH9	NM_001372	exon50	c.G9880A	p.A3294T	GCCACCGCGGACC	.	115	44	113	0	.	168	A	11757692	G	A	11757692	3	1	70	1	0	0	0	0	1	0	0	0	4608	1087	38	1	10078	1	DNAH9	17	11757692	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	6522413	11757692	69437518	104	9561											
SMCR8	140775	hgsc.bcm.edu;bcgsc.ca	37	17	18219495	18219495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMCR8	NM_144775	exon1	c.G392A	p.G131D	AGGAGGGCGCCTT	.	61	4	42	0	.	91	A	18219495	G	A	18219495	3	1	70	1	0	0	0	0	1	0	0	0	14792	1203	42	3	394	3	SMCR8	17	18219495	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	6461803	18219495	62975715	105	9562											
GPR179	440435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36499312	36499312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPR179	NM_001004334	exon1	c.T361C	p.S121P	CACTGGACTCACG	.	136	15	170	1	.	93	G	36499312	A	G	36499312	3	3	70	1	0	0	0	0	1	0	0	0	6674	275	10	2	6786	2	GPR179	17	36499312	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	18279817	36499312	44695898	106	9563											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60766239	60766239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRC2	NM_006039	exon23	c.C3252A	p.S1084R	GCACAGCCCCTCA	.	124	42	127	0	.	117	A	60766239	C	A	60766239	3	1	70	1	0	0	0	0	1	0	0	0	9758	738	26	3	3342	3	MRC2	17	60766239	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	24266927	60766239	20428971	107	9564											
GRIN2C	2905	bcgsc.ca;mdanderson.org	37	17	72848172	72848172	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GRIN2C	NM_000835	exon3	c.T978C	p.P326P	CCGGGCAGGGCTG	.	17	3	37	0	.	228	G	72848172	A	G	72848172	2	3	70	1	0	0	0	0	0	0	0	1	6781	175	7	2		2	GRIN2C	17	72848172	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	12081933	72848172	8347038	108	9565											
RNF213	57674	hgsc.bcm.edu;bcgsc.ca	37	17	78346832	78346832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RNF213	NM_001256071	exon49	c.T12809C	p.V4270A	TCCGGGTGGAGAA	.	95	6	135	0	.	577	C	78346832	T	C	78346832	3	2	70	1	0	0	0	0	1	0	0	0	13477	1696	59	2	13318	2	RNF213	17	78346832	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	5498660	78346832	2848378	109	9566											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3090725	3090725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYOM1	NM_003803	exon27	c.G3940A	p.G1314R	ACGTTCCCTCATC	.	165	30	216	0	.	94	T	3090725	C	T	3090725	3	4	70	1	0	0	0	0	1	0	0	0	10091	632	22	3	1165	3	MYOM1	18	3090725	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10		3090725	74986523	110	9567											
ANKRD12	23253	hgsc.bcm.edu;bcgsc.ca	37	18	9254527	9254527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKRD12	NM_015208	exon9	c.T1262C	p.V421A	CTAGGGTCTTATA	.	76	4	80	0	.	92	C	9254527	T	C	9254527	3	2	70	1	0	0	0	0	1	0	0	0	640	1667	58	2	1292	2	ANKRD12	18	9254527	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	6163802	9254527	68822721	111	9568											
MED16	10025	hgsc.bcm.edu;bcgsc.ca	37	19	873468	873468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MED16	NM_005481	exon11	c.T1886C	p.L629P	CTGGCCAGCAGGT	.	88	5	66	0	.	186	G	873468	A	G	873468	3	3	70	1	0	0	0	0	1	0	0	0	9434	188	7	2	771	2	MED16	19	873468	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		873468	58255515	112	9569											
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1112458	1112458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_014963	exon21	c.C2458T	p.R820C	GCACGCGGCGCCG	.	49	15	104	0	.	.	A	1112458	G	A	1112458	3	1	70	1	0	0	0	0	1	0	0	0	13863	1116	39	1	1690	1	SBNO2	19	1112458	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	238990	1112458	58016525	113	9570											
PDE4A	5141	hgsc.bcm.edu;bcgsc.ca	37	19	10572599	10572599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE4A	NM_001111307	exon13	c.T1667C	p.L556P	CTGACCTGAAGAC	.	30	4	50	0	.	523	C	10572599	T	C	10572599	3	2	70	1	0	0	0	0	1	0	0	0	11639	1580	55	2	2174	2	PDE4A	19	10572599	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	9460141	10572599	48556384	114	9571											
ATG4D	84971	hgsc.bcm.edu;bcgsc.ca	37	19	10659671	10659671	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATG4D	NM_032885	exon6	c.T927C	p.G309G	ACTGGGTGGCGAG	.	117	5	138	0	.	90	C	10659671	T	C	10659671	2	2	70	1	0	0	0	0	0	0	0	1	1099	1683	59	2		2	ATG4D	19	10659671	Silent	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	87072	10659671	48469312	115	9572											
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23556628	23556628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF91	NM_003430	exon3	c.T169C	p.S57P	GCTTAGAGAGAGC	.	71	4	117	0	.	90	G	23556628	A	G	23556628	3	3	70	1	0	0	0	0	1	0	0	0	18197	304	11	2	3414	2	ZNF91	19	23556628	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	12896957	23556628	35572355	116	9573											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31769301	31769301	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TSHZ3	NM_020856	exon2	c.G1398C	p.L466L	CACATTCAGTTTT	.	177	34	191	0	.	232	G	31769301	C	G	31769301	2	3	70	1	0	0	0	0	0	0	0	1	16622	813	29	4		4	TSHZ3	19	31769301	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	8212673	31769301	27359682	117	9574											
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34818735	34818735	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0355	NM_014686	exon5	c.C906T	p.F302F	CGGCTTCCACCTG	.	88	13	99	0	.	91	T	34818735	C	T	34818735	2	4	70	1	0	0	0	0	0	0	0	1	8170	854	30	3		3	KIAA0355	19	34818735	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	3049434	34818735	24310248	118	9575											
SAMD4B	55095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39868421	39868421	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SAMD4B	NM_018028	exon10	c.C1401G	p.A467A	CGTCGCCGACGGA	.	78	12	88	0	.	90	G	39868421	C	G	39868421	2	3	70	1	0	0	0	0	0	0	0	1	13822	639	23	4		4	SAMD4B	19	39868421	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	5049686	39868421	19260562	119	9576											
FCGBP	8857	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40368846	40368846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FCGBP	NM_003890	exon28	c.T12502G	p.S4168A	CCACGGAGACAGG	.	120	11	139	0	.	98	C	40368846	A	C	40368846	3	2	70	1	0	0	0	0	1	0	0	0	5778	304	11	5	3751	5	FCGBP	19	40368846	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	500425	40368846	18760137	120	9577											
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54759311	54759311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LILRB5	NM_001081442	exon5	c.G790A	p.V264I	CCTGGACGAGGTC	.	228	28	217	0	.	92	T	54759311	C	T	54759311	3	4	70	1	0	0	0	0	1	0	0	0	8794	536	19	1	1021	1	LILRB5	19	54759311	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	14390465	54759311	4369672	121	9578											
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133319	57133319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF71	NM_021216	exon3	c.G664A	p.A222T	GGCAAGGCCTTCC	.	118	18	100	0	.	91	A	57133319	G	A	57133319	3	1	70	1	0	0	0	0	1	0	0	0	18111	1203	42	3	666	3	ZNF71	19	57133319	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	2374008	57133319	1995664	122	9579											
DEFB126	81623	hgsc.bcm.edu;bcgsc.ca	37	20	126206	126206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DEFB126	NM_030931	exon2	c.T209C	p.V70A	ATCCTGTTTTCTG	.	134	6	109	0	.	90	C	126206	T	C	126206	3	2	70	1	0	0	0	0	1	0	0	0	4412	1725	60	2	215	2	DEFB126	20	126206	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10		126206	62899314	123	9580											
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1460431	1460431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIRPB2	NM_001122962	exon2	c.C365T	p.T122I	GTTCCAGTGTGCT	.	217	61	233	0	.	226	A	1460431	G	A	1460431	3	1	70	1	0	0	0	0	1	0	0	0	14334	1029	36	3	679	3	SIRPB2	20	1460431	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	1334225	1460431	61565089	124	9581											
FERMT1	55612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6057869	6057869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FERMT1	NM_017671	exon15	c.A1985T	p.E662V	AGTGTTTCATTCT	.	137	23	167	0	.	495	A	6057869	T	A	6057869	3	1	70	1	0	0	0	0	1	0	0	0	5817	1783	62	4	52	4	FERMT1	20	6057869	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	4597438	6057869	56967651	125	9582											
NCOA3	8202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	46271003	46271003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOA3	NM_181659	exon17	c.A3127G	p.N1043D	CCTTCCAACCTGG	.	40	4	72	0	.	229	G	46271003	A	G	46271003	3	3	70	1	0	0	0	0	1	0	0	0	10230	130	5	2	3215	2	NCOA3	20	46271003	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	40213134	46271003	16754517	126	9583											
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62373927	62373927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC2A4RG	NM_020062	exon6	c.G919A	p.V307I	AGCACCGTTGCTA	.	39	6	40	0	.	90	A	62373927	G	A	62373927	3	1	70	1	0	0	0	0	1	0	0	0	14547	1145	40	1	941	1	SLC2A4RG	20	62373927	Missense_Mutation	SNP	G	TCGA-DD-A39X-01A-11D-A20W-10	16102924	62373927	651593	127	9584											
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38095410	38095410	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIM2	NM_005069	exon5	c.C522A	p.G174G	CGCGGGCCTGACC	.	58	14	80	0	.	90	A	38095410	C	A	38095410	2	1	70	1	0	0	0	0	0	0	0	1	14324	726	26	3		3	SIM2	21	38095410	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10		38095410	10034485	128	9585											
CBS	875	hgsc.bcm.edu;bcgsc.ca	37	21	44480560	44480560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CBS	NM_000071	exon12	c.G1136A	p.R379Q	TAGTTCCGCACTG	.	54	4	58	0	.	90	T	44480560	C	T	44480560	3	4	70	1	0	0	0	0	1	0	0	0	2711	652	23	1	543	1	CBS	21	44480560	Missense_Mutation	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	6385150	44480560	3649335	129	9586											
FTCD	10841	hgsc.bcm.edu;broad.mit.edu	37	21	47575400	47575401	+	In_Frame_Ins	INS	-	-	CCATAA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FTCD	NM_206965	exon1	c.38_39insTTATGG	p.E13delinsVME	TTCCCCTCCGAAA	.	82	11	100	0	.	92	CCATAA	47575401	-	CCATAA	47575400	7	5	70	1	0	1	1	0	0	0	0	0	6081	1551	54	0	1643	0	FTCD	21	47575400	In_Frame_Ins	INS	-	TCGA-DD-A39X-01A-11D-A20W-10	3094840	47575400	554495	130	9587											
KCTD17	79734	hgsc.bcm.edu;bcgsc.ca	37	22	37453518	37453518	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCTD17	NM_024681	exon4	c.C492T	p.G164G	TGATGGCTGGCGC	.	46	4	75	0	.	68	T	37453518	C	T	37453518	2	4	70	1	0	0	0	0	0	0	0	1	8104	784	28	3		3	KCTD17	22	37453518	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10		37453518	13851048	131	9588											
TNRC6B	23112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40521858	40521858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNRC6B	NM_001024843	exon3	c.A37G	p.S13G	GAAAGCAGTTCCA	.	74	17	90	1	.	22	G	40521858	A	G	40521858	3	3	70	1	0	0	0	0	1	0	0	0	16338	188	7	2	39	2	TNRC6B	22	40521858	Missense_Mutation	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10	3068340	40521858	10782708	132	9589											
ABCB7	22	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	74295254	74295254	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCB7	NM_004299	exon6	c.T801C	p.A267A	TACCAAAGCACTC	.	137	6	157	0	.	131	G	74295254	A	G	74295254	2	3	70	1	0	0	0	0	0	0	0	1	46	59	3	2		2	ABCB7	23	74295254	Silent	SNP	A	TCGA-DD-A39X-01A-11D-A20W-10		74295254	80975306	133	9590											
HMGN5	79366	hgsc.bcm.edu;bcgsc.ca	37	X	80371833	80371833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HMGN5	NM_030763	exon6	c.A137G	p.K46R	TTTGTCTTCATTT	.	81	4	102	0	.	130	C	80371833	T	C	80371833	3	2	70	1	0	0	0	0	1	0	0	0	7238	1609	56	2	719	2	HMGN5	23	80371833	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	6076579	80371833	74898727	134	9591											
BHLHB9	80823	hgsc.bcm.edu;bcgsc.ca	37	X	102004756	102004756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BHLHB9	NM_001142530	exon2	c.T833C	p.I278T	AGCCTATCCCTGA	.	87	4	122	0	.	132	C	102004756	T	C	102004756	3	2	70	1	0	0	0	0	1	0	0	0	1420	1435	50	2	835	2	BHLHB9	23	102004756	Missense_Mutation	SNP	T	TCGA-DD-A39X-01A-11D-A20W-10	21632923	102004756	53265804	135	9592											
LDOC1	23641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	140270987	140270987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDOC1	NM_012317	exon1	c.220delT	p.Y74fs	GCATGTAAGACGC	.	75	28	97	0	.	130	-	140270987	A	-	140270987	7	5	70	1	0	1	0	1	0	0	0	0	8709	362	13	0	224	0	LDOC1	23	140270987	Frame_Shift_Del	DEL	A	TCGA-DD-A39X-01A-11D-A20W-10	38266231	140270987	14999573	136	9593											
HCFC1	3054	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153220034	153220034	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCFC1	NM_005334	exon17	c.G3816A	p.V1272V	GGCTGTCACAGTC	.	104	40	165	1	.	132	T	153220034	C	T	153220034	2	4	70	1	0	0	0	0	0	0	0	1	6991	813	29	3		3	HCFC1	23	153220034	Silent	SNP	C	TCGA-DD-A39X-01A-11D-A20W-10	12949047	153220034	2050526	137	9594											
KIAA1751	85452	hgsc.bcm.edu;bcgsc.ca	37	1	1887022	1887022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1751	NM_001080484	exon18	c.T2284C	p.S762P	CCTAGGAAAATTC	.	179	8	95	0	.	69	G	1887022	A	G	1887022	3	3	71	1	0	0	0	0	1	0	0	0	8256	246	9	2	8	2	KIAA1751	1	1887022	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		1887022	247363599	1	9595											
CDC42	998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22413358	22413358	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDC42	NM_001791	exon5	c.485delA	p.Q162fs	TTACACAGGTAAG	.	99	51	48	0	.	1084	-	22413358	A	-	22413358	7	5	71	1	0	1	0	1	0	0	0	0	3071	202	7	0	499	0	CDC42	1	22413358	Frame_Shift_Del	DEL	A	TCGA-DD-A39Y-01A-11D-A20W-10	20526336	22413358	226837263	2	9596											
RPL11	6135	hgsc.bcm.edu;bcgsc.ca	37	1	24022333	24022333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPL11	NM_000975	exon5	c.A442G	p.T148A	CGCAGGACAGGCT	.	165	7	88	0	.	226	G	24022333	A	G	24022333	3	3	71	1	0	0	0	0	1	0	0	0	13557	275	10	2	460	2	RPL11	1	24022333	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	1608975	24022333	225228288	3	9597											
YTHDF2	51441	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	29069727	29069727	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	YTHDF2	NM_016258	exon4	c.A945G	p.P315P	TAGCCCACCAGTG	.	373	47	196	0	.	92	G	29069727	A	G	29069727	2	3	71	1	0	0	0	0	0	0	0	1	17496	146	6	2		2	YTHDF2	1	29069727	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	5047394	29069727	220180894	4	9598											
PUM1	9698	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	31441332	31441332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PUM1	NM_014676	exon11	c.G1514A	p.R505H	CCTCCACGGAGAA	.	182	22	87	0	.	92	T	31441332	C	T	31441332	3	4	71	1	0	0	0	0	1	0	0	0	12825	536	19	1	2100	1	PUM1	1	31441332	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	2371605	31441332	217809289	5	9599											
MTF1	4520	hgsc.bcm.edu;bcgsc.ca	37	1	38288327	38288327	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTF1	NM_005955	exon9	c.A1233G	p.T411T	ATTTCCTGTGGAT	.	63	4	32	0	.	92	C	38288327	T	C	38288327	2	2	71	1	0	0	0	0	0	0	0	1	9922	1567	55	2		2	MTF1	1	38288327	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	6846995	38288327	210962294	6	9600											
CELSR2	1952	ucsc.edu;bcgsc.ca	37	1	109813221	109813221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CELSR2	NM_001408	exon24	c.A7482G	p.T2494T	CATCACAGGTACT	.	147	90	94	0	.	526	G	109813221	A	G	109813221	2	3	71	1	0	0	0	0	0	0	0	1	3222	202	7	2		2	CELSR2	1	109813221	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	71524894	109813221	139437400	7	9601											
SPRR2G	6706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	153122487	153122487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRR2G	NM_001014291	exon2	c.G100A	p.E34K	AAGGCTCAGGGCA	.	141	74	66	0	.	68	T	153122487	C	T	153122487	3	4	71	1	0	0	0	0	1	0	0	0	15101	835	29	3	125	3	SPRR2G	1	153122487	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	43309266	153122487	96128134	8	9602											
SCAMP3	10067	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	155227359	155227359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCAMP3	NM_005698	exon6	c.A607G	p.I203V	AGAGGATAGAAAG	.	284	175	125	0	.	93	C	155227359	T	C	155227359	3	2	71	1	0	0	0	0	1	0	0	0	13872	1406	49	2	452	2	SCAMP3	1	155227359	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	2104872	155227359	94023262	9	9603											
RNASEL	6041	ucsc.edu;bcgsc.ca	37	1	182550475	182550475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNASEL	NM_021133	exon5	c.G1790A	p.R597Q	ACATTCCGAAGCG	.	268	44	157	1	.	336	T	182550475	C	T	182550475	3	4	71	1	0	0	0	0	1	0	0	0	13416	652	23	1	447	1	RNASEL	1	182550475	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	27323116	182550475	66700146	10	9604											
TPR	7175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	186319458	186319458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon21	c.A2673C	p.K891N	TAGTTCTTTTGTG	.	237	108	138	0	.	228	G	186319458	T	G	186319458	3	3	71	1	0	0	0	0	1	0	0	0	16413	1606	56	5	4542	5	TPR	1	186319458	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	3768983	186319458	62931163	11	9605											
DISP1	84976	hgsc.bcm.edu;bcgsc.ca	37	1	223177971	223177971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DISP1	NM_032890	exon10	c.C3232A	p.R1078S	CTGAGTCGCGTGG	.	239	22	131	0	.	68	A	223177971	C	A	223177971	3	1	71	1	0	0	0	0	1	0	0	0	4539	884	31	1	3258	1	DISP1	1	223177971	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	36858513	223177971	26072650	12	9606											
ASAP2	8853	hgsc.bcm.edu;bcgsc.ca	37	2	9515031	9515031	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASAP2	NM_001135191	exon17	c.T1704C	p.D568D	TGCTGATGGTGTG	.	71	4	61	0	.	90	C	9515031	T	C	9515031	2	2	71	1	0	0	0	0	0	0	0	1	1011	1461	51	2		2	ASAP2	2	9515031	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		9515031	233684342	13	9607											
DNAH6	1768	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84954804	84954804	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH6	NM_001370	exon61	c.C9984T	p.T3328T	CAATACCACCATT	.	193	65	222	0	.	69	T	84954804	C	T	84954804	2	4	71	1	0	0	0	0	0	0	0	1	4605	581	21	3		3	DNAH6	2	84954804	Silent	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	75439773	84954804	158244569	14	9608											
RETSAT	54884	hgsc.bcm.edu;bcgsc.ca	37	2	85578072	85578072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RETSAT	NM_017750	exon3	c.A428G	p.Q143R	TCCAGCTGCCCTT	.	162	7	191	0	.	70	C	85578072	T	C	85578072	3	2	71	1	0	0	0	0	1	0	0	0	13238	1580	55	2	1440	2	RETSAT	2	85578072	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	623268	85578072	157621301	15	9609											
MRPS5	64969	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95767468	95767468	+	Missense_Mutation	SNP	C	C	A	rs199914429	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS5	NM_031902	exon8	c.G764T	p.G255V	GAAAAACCTTTAA	.	110	23	91	0	C|0.999;G|0.000	92	A	95767468	C	A	95767468	3	1	71	1	0	0	0	0	1	0	0	0	9846	521	18	3	548	3	MRPS5	2	95767468	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	10189396	95767468	147431905	16	9610											
IL18RAP	8807	hgsc.bcm.edu;bcgsc.ca	37	2	103067460	103067460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL18RAP	NM_003853	exon11	c.A1363G	p.R455G	CTTGAAAGAGATG	.	77	4	59	0	.	95	G	103067460	A	G	103067460	3	3	71	1	0	0	0	0	1	0	0	0	7648	64	3	2	1397	2	IL18RAP	2	103067460	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	7299992	103067460	140131913	17	9611											
SAP130	79595	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	128712861	128712861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SAP130	NM_001145928	exon16	c.G2199T	p.M733I	AGTCTCCATGGAC	.	195	61	188	0	.	94	A	128712861	C	A	128712861	3	1	71	1	0	0	0	0	1	0	0	0	13831	594	21	3	1076	3	SAP130	2	128712861	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	25645401	128712861	114486512	18	9612											
LY75	4065	hgsc.bcm.edu;bcgsc.ca	37	2	160732083	160732083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LY75	NM_002349	exon12	c.A1846G	p.S616G	TGAAGCTTCTGCA	.	105	5	83	0	.	90	C	160732083	T	C	160732083	3	2	71	1	0	0	0	0	1	0	0	0	9099	1609	56	2	3418	2	LY75	2	160732083	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	32019222	160732083	82467290	19	9613											
GPR155	151556	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175318476	175318476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR155	NM_001033045	exon12	c.C1865T	p.S622L	TCAAACGAAGGAA	.	93	36	95	1	.	91	A	175318476	G	A	175318476	3	1	71	1	0	0	0	0	1	0	0	0	6660	1059	37	1	771	1	GPR155	2	175318476	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	14586393	175318476	67880897	20	9614											
OSBPL6	114880	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179226415	179226415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL6	NM_001201480	exon14	c.C1235G	p.S412C	TGCATTCTCTTTT	.	234	91	258	0	.	69	G	179226415	C	G	179226415	3	3	71	1	0	0	0	0	1	0	0	0	11281	913	32	4	1324	4	OSBPL6	2	179226415	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	3907939	179226415	63972958	21	9615											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179427959	179427959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.A82900G	p.T27634A	GCTTGGTCACTGT	.	321	108	304	0	.	636	C	179427959	T	C	179427959	3	2	71	1	0	0	0	0	1	0	0	0	16732	1667	58	2	25227	2	TTN	2	179427959	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	201544	179427959	63771414	22	9616											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179500233	179500233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon227	c.G41818A	p.E13940K	TATCTTCTGGCAT	.	165	49	153	0	.	636	T	179500233	C	T	179500233	3	4	71	1	0	0	0	0	1	0	0	0	16732	922	32	3	66419	3	TTN	2	179500233	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	72274	179500233	63699140	23	9617											
GLS	2744	hgsc.bcm.edu;bcgsc.ca	37	2	191765310	191765310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLS	NM_014905	exon4	c.T626C	p.V209A	ACATTGTTTTGTT	.	55	4	63	0	.	92	C	191765310	T	C	191765310	3	2	71	1	0	0	0	0	1	0	0	0	6463	1725	60	2	640	2	GLS	2	191765310	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	12265077	191765310	51434063	24	9618											
ABCB6	10058	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220075719	220075719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB6	NM_005689	exon15	c.G2080T	p.D694Y	CCTCATCATTCCC	.	149	41	115	0	.	153	A	220075719	C	A	220075719	3	1	71	1	0	0	0	0	1	0	0	0	45	826	29	3	468	3	ABCB6	2	220075719	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	28310409	220075719	23123654	25	9619											
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu	37	2	233350834	233350834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ECEL1	NM_004826	exon2	c.A530G	p.Q177R	TTGCGCTGGGCCG	.	9	5	9	0	.	90	C	233350834	T	C	233350834	3	2	71	1	0	0	0	0	1	0	0	0	4891	1580	55	2	1865	2	ECEL1	2	233350834	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	13275115	233350834	9848539	26	9620											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu	37	3	10108949	10108949	+	Silent	SNP	T	T	C	rs201487858		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCD2	NM_001018115	exon26	c.T2442C	p.T814T	GCTCACTCGGTTA	.	116	6	61	0	T|0.998;C|0.002	229	C	10108949	T	C	10108949	2	2	71	1	0	0	0	0	0	0	0	1	5665	1538	54	2		2	FANCD2	3	10108949	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		10108949	187913481	27	9621											
SATB1	6304	hgsc.bcm.edu;bcgsc.ca	37	3	18427925	18427925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SATB1	NM_002971	exon8	c.C1385A	p.P462H	ATGAGGGGGGCAG	.	191	9	131	0	.	228	T	18427925	G	T	18427925	3	4	71	1	0	0	0	0	1	0	0	0	13853	1232	43	3	922	3	SATB1	3	18427925	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	8318976	18427925	179594505	28	9622											
MST1	4485	hgsc.bcm.edu;bcgsc.ca	37	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	GGGGGTCCAGGAT	.	553	46	262	0	.	278	T	49722913	C	T	49722913	3	4	71	1	0	0	0	0	1	0	0	0	9890	855	30	3	791	3	MST1	3	49722913	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	31294988	49722913	148299517	29	9623											
EPHA3	2042	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89480505	89480505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPHA3	NM_005233	exon13	c.C2342G	p.T781R	ATACAACAAGAGT	.	141	83	121	0	.	1500	G	89480505	C	G	89480505	3	3	71	1	0	0	0	0	1	0	0	0	5168	478	17	4	2418	4	EPHA3	3	89480505	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	39757592	89480505	108541925	30	9624											
SI	6476	hgsc.bcm.edu;bcgsc.ca	37	3	164758754	164758754	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SI	NM_001041	exon18	c.A2133G	p.E711E	TACTGTTTCTCCA	.	87	4	89	0	.	104	C	164758754	T	C	164758754	2	2	71	1	0	0	0	0	0	0	0	1	14297	1838	64	2		2	SI	3	164758754	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	75278249	164758754	33263676	31	9625											
MECOM	2122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	169099249	169099249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MECOM	NM_004991	exon2	c.G101A	p.G34E	GCTACTCCATCTG	.	153	51	92	0	.	853	T	169099249	C	T	169099249	3	4	71	1	0	0	0	0	1	0	0	0	9422	855	30	3	3692	3	MECOM	3	169099249	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	4340495	169099249	28923181	32	9626											
DCUN1D1	54165	hgsc.bcm.edu;bcgsc.ca	37	3	182665124	182665124	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCUN1D1	NM_020640	exon7	c.604-2A>G	.	TGTTCCTATTTAA	.	63	4	36	0	.	91	C	182665124	T	C	182665124	5	2	71	1	0	0	0	0	0	0	1	0	4313	1536	53	2	185	2	DCUN1D1	3	182665124	Splice_Site	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	13565875	182665124	15357306	33	9627											
MUC4	4585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195508423	195508423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.C10028T	p.T3343I	ACAGGGGTGGTGT	.	304	115	159	0	.	90	A	195508423	G	A	195508423	3	1	71	1	0	0	0	0	1	0	0	0	9978	1261	44	3		3	MUC4	3	195508423	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	12843299	195508423	2514007	34	9628											
CORIN	10699	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	47695047	47695047	+	Missense_Mutation	SNP	C	C	T	rs143738568	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CORIN	NM_006587	exon6	c.G853A	p.G285R	GTTTCCCGGGGAT	.	127	48	100	0	C|1.000;G|0.000	91	T	47695047	C	T	47695047	3	4	71	1	0	0	0	0	1	0	0	0	3752	652	23	1	2343	1	CORIN	4	47695047	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		47695047	143459229	35	9629											
SLAIN2	57606	hgsc.bcm.edu;bcgsc.ca	37	4	48384604	48384604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_020846	exon5	c.A882G	p.A294A	ATATGCAGCCACC	.	45	4	29	0	.	.	G	48384604	A	G	48384604	2	3	71	1	0	0	0	0	0	0	0	1	14366	175	7	2		2	SLAIN2	4	48384604	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	689557	48384604	142769672	36	9630											
RAP1GDS1	5910	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99313179	99313179	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAP1GDS1	NM_001100426	exon6	c.T588C	p.N196N	CCAAAATGCAGCT	.	77	31	126	0	.	660	C	99313179	T	C	99313179	2	2	71	1	0	0	0	0	0	0	0	1	13039	1461	51	2		2	RAP1GDS1	4	99313179	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	50928575	99313179	91841097	37	9631											
SPRY1	10252	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	124322782	124322782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRY1	NM_001258039	exon2	c.G36A	p.S12S	CAGTTCGTTAGTT	.	189	59	143	0	.	660	A	124322782	G	A	124322782	2	1	71	1	0	0	0	0	0	0	0	1	15104	1132	40	1		1	SPRY1	4	124322782	Silent	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	25009603	124322782	66831494	38	9632											
ARFIP1	27236	hgsc.bcm.edu;bcgsc.ca	37	4	153803996	153803996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFIP1	NM_001025595	exon7	c.A755G	p.D252G	TTGAAGATACATT	.	66	4	60	0	.	91	G	153803996	A	G	153803996	3	3	71	1	0	0	0	0	1	0	0	0	854	333	12	2	777	2	ARFIP1	4	153803996	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	29481214	153803996	37350280	39	9633											
CTNND2	1501	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	11159822	11159822	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTNND2	NM_001332	exon12	c.C2025T	p.I675I	ATCCTGGATGATT	.	329	66	185	0	.	293	A	11159822	G	A	11159822	2	1	71	1	0	0	0	0	0	0	0	1	4020	1164	41	3		3	CTNND2	5	11159822	Silent	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10		11159822	169755438	40	9634											
SNX18	112574	hgsc.bcm.edu;bcgsc.ca	37	5	53813856	53813856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNX18	NM_052870	exon1	c.A74G	p.E25G	AGCACGAGGTGCT	.	48	4	33	0	.	226	G	53813856	A	G	53813856	3	3	71	1	0	0	0	0	1	0	0	0	14889	304	11	2	76	2	SNX18	5	53813856	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	42654034	53813856	127101404	41	9635											
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89968413	89968413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR98	NM_032119	exon22	c.A4803G	p.G1601G	CAGAGGAGCTCTG	.	372	83	177	0	.	103	G	89968413	A	G	89968413	2	3	71	1	0	0	0	0	0	0	0	1	6721	291	11	2		2	GPR98	5	89968413	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	36154557	89968413	90946847	42	9636											
BRD2	6046	hgsc.bcm.edu;bcgsc.ca	37	6	32945598	32945598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRD2	NM_005104	exon9	c.T1394C	p.V465A	TACCAGTCTCTAC	.	291	19	205	0	.	398	C	32945598	T	C	32945598	3	2	71	1	0	0	0	0	1	0	0	0	1502	1667	58	2	1424	2	BRD2	6	32945598	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		32945598	138169469	43	9637											
EYS	346007	hgsc.bcm.edu;bcgsc.ca	37	6	66094287	66094287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYS	NM_001142801	exon8	c.A1291G	p.R431G	TGAATCTTCCAAT	.	77	4	42	0	.	660	C	66094287	T	C	66094287	3	2	71	1	0	0	0	0	1	0	0	0	5332	1617	56	2	8249	2	EYS	6	66094287	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	33148689	66094287	105020780	44	9638											
LMBRD1	55788	hgsc.bcm.edu;bcgsc.ca	37	6	70490443	70490443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LMBRD1	NM_018368	exon3	c.T250C	p.W84R	TAGCCCAGTCCTA	.	52	4	40	0	.	91	G	70490443	A	G	70490443	3	3	71	1	0	0	0	0	1	0	0	0	8842	188	7	2	1428	2	LMBRD1	6	70490443	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	4396156	70490443	100624624	45	9639											
ASCC3	10973	hgsc.bcm.edu;bcgsc.ca	37	6	101312035	101312035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASCC3	NM_006828	exon3	c.A146G	p.K49R	ATTATCTTCTTCC	.	112	5	75	0	.	96	C	101312035	T	C	101312035	3	2	71	1	0	0	0	0	1	0	0	0	1033	1609	56	2	6721	2	ASCC3	6	101312035	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	30821592	101312035	69803032	46	9640											
HINT3	135114	hgsc.bcm.edu;bcgsc.ca	37	6	126278232	126278232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HINT3	NM_138571	exon1	c.A109C	p.K37Q	GCTGGCAAGTCAC	.	187	8	117	0	.	90	C	126278232	A	C	126278232	3	2	71	1	0	0	0	0	1	0	0	0	7113	131	5	5	111	5	HINT3	6	126278232	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	24966197	126278232	44836835	47	9641											
SLC22A2	6582	hgsc.bcm.edu;bcgsc.ca	37	6	160671613	160671613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC22A2	NM_003058	exon3	c.A640G	p.S214G	CTTTGCTGACCAG	.	88	4	125	0	.	154	C	160671613	T	C	160671613	3	2	71	1	0	0	0	0	1	0	0	0	14450	1580	55	2	1063	2	SLC22A2	6	160671613	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	34393381	160671613	10443454	48	9642											
LPA	4018	hgsc.bcm.edu;bcgsc.ca	37	6	161022116	161022116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LPA	NM_005577	exon20	c.A2960G	p.N987S	CAGTAGTTCTTGA	.	74	4	136	0	.	74	C	161022116	T	C	161022116	3	2	71	1	0	0	0	0	1	0	0	0	8903	1725	60	2	3246	2	LPA	6	161022116	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	350503	161022116	10092951	49	9643											
COBL	23242	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51287588	51287588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COBL	NM_015198	exon2	c.A95C	p.H32P	TGCACATGCAGAG	.	182	79	118	1	.	95	G	51287588	T	G	51287588	3	3	71	1	0	0	0	0	1	0	0	0	3653	1464	51	5	3738	5	COBL	7	51287588	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		51287588	107851075	50	9644											
SEMA3D	223117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644405	84644405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEMA3D	NM_152754	exon14	c.C1673T	p.A558V	GAGCATGCATTTC	.	159	35	148	0	.	138	A	84644405	G	A	84644405	3	1	71	1	0	0	0	0	1	0	0	0	14027	1319	46	3	676	3	SEMA3D	7	84644405	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	33356817	84644405	74494258	51	9645											
CYP3A4	1576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99364063	99364063	+	Nonsense_Mutation	SNP	G	G	A	rs138105638		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP3A4	NM_017460	exon9	c.C802T	p.R268X	CCACTCGGTGCTA	.	188	26	159	0	G|1.000;A|0.000	517	A	99364063	G	A	99364063	4	1	71	1	0	0	0	0	0	1	0	0	4178	1124	39	1	729	1	CYP3A4	7	99364063	Nonsense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	14719658	99364063	59774600	52	9646											
ATXN7L1	222255	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	105283324	105283324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L1	NM_020725	exon5	c.G823C	p.G275R	TGGTGCCATTTTG	.	480	125	309	0	.	90	G	105283324	C	G	105283324	3	3	71	1	0	0	0	0	1	0	0	0	1216	594	21	4	1797	4	ATXN7L1	7	105283324	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	5919261	105283324	53855339	53	9647											
CCDC136	64753	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128455707	128455707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC136	NM_022742	exon16	c.A3085C	p.K1029Q	CAGAGGAAATTAG	.	146	73	102	0	.	24	C	128455707	A	C	128455707	3	2	71	1	0	0	0	0	1	0	0	0	2770	247	9	5	3147	5	CCDC136	7	128455707	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	23172383	128455707	30682956	54	9648											
CNTNAP2	26047	hgsc.bcm.edu;bcgsc.ca	37	7	147844667	147844667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTNAP2	NM_014141	exon17	c.A2639G	p.D880G	ACGATGACCAGTG	.	118	5	87	0	.	100	G	147844667	A	G	147844667	3	3	71	1	0	0	0	0	1	0	0	0	3647	275	10	2	2705	2	CNTNAP2	7	147844667	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	19388960	147844667	11293996	55	9649											
ZDHHC2	51201	hgsc.bcm.edu;bcgsc.ca	37	8	17067945	17067945	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_016353	exon10	c.T906C	p.P302P	GGATCCTGAACAA	.	63	4	74	0	.	.	C	17067945	T	C	17067945	2	2	71	1	0	0	0	0	0	0	0	1	17607	1567	55	2		2	ZDHHC2	8	17067945	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		17067945	129296077	56	9650											
TEX15	56154	hgsc.bcm.edu;bcgsc.ca	37	8	30703400	30703400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEX15	NM_031271	exon1	c.A3134G	p.D1045G	TGAAGGTCACAAC	.	69	4	99	0	.	97	C	30703400	T	C	30703400	3	2	71	1	0	0	0	0	1	0	0	0	15776	1667	58	2	5251	2	TEX15	8	30703400	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	13635455	30703400	115660622	57	9651											
WHSC1L1	54904	hgsc.bcm.edu;bcgsc.ca	37	8	38178646	38178646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WHSC1L1	NM_017778	exon8	c.T1753C	p.S585P	ATTCAGAACGAGT	.	82	4	83	0	.	658	G	38178646	A	G	38178646	3	3	71	1	0	0	0	0	1	0	0	0	17360	246	9	2	2715	2	WHSC1L1	8	38178646	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	7475246	38178646	108185376	58	9652											
ARFGEF1	10565	hgsc.bcm.edu;bcgsc.ca	37	8	68113709	68113709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFGEF1	NM_006421	exon37	c.C5260G	p.L1754V	TCAAAAGCCTCTG	.	349	16	106	0	.	294	C	68113709	G	C	68113709	3	2	71	1	0	0	0	0	1	0	0	0	852	971	34	4	301	4	ARFGEF1	8	68113709	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	29935063	68113709	78250313	59	9653											
KIFC2	90990	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	145693366	145693366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIFC2	NM_145754	exon7	c.C806T	p.P269L	GGGCTCCGCAGGT	.	218	25	42	0	.	92	T	145693366	C	T	145693366	3	4	71	1	0	0	0	0	1	0	0	0	8313	652	23	1	832	1	KIFC2	8	145693366	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	77579657	145693366	670656	60	9654											
KIAA2026	158358	hgsc.bcm.edu;bcgsc.ca	37	9	5921058	5921058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA2026	NM_001017969	exon8	c.A4938G	p.S1646S	TCTTGCTGAAGAA	.	72	5	51	0	.	92	C	5921058	T	C	5921058	2	2	71	1	0	0	0	0	0	0	0	1	8270	1567	55	2		2	KIAA2026	9	5921058	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		5921058	135292373	61	9655											
FREM1	158326	hgsc.bcm.edu;bcgsc.ca	37	9	14863881	14863881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FREM1	NM_144966	exon4	c.T255C	p.L85L	GTTGGGAAGGAAA	.	100	4	112	0	.	138	G	14863881	A	G	14863881	2	3	71	1	0	0	0	0	0	0	0	1	6044	233	9	2		2	FREM1	9	14863881	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	8942823	14863881	126349550	62	9656											
CHMP5	51510	hgsc.bcm.edu;bcgsc.ca	37	9	33271180	33271180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHMP5	NM_016410	exon5	c.A346G	p.M116V	AAGGAAATGAAGA	.	82	6	64	0	.	91	G	33271180	A	G	33271180	3	3	71	1	0	0	0	0	1	0	0	0	3359	101	4	2	364	2	CHMP5	9	33271180	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	18407299	33271180	107942251	63	9657											
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33295418	33295418	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFX1	NM_147134	exon2	c.G1026A	p.T342T	GGAAACGCACACA	.	33	14	27	0	.	91	A	33295418	G	A	33295418	2	1	71	1	0	0	0	0	0	0	0	1	10387	1074	38	1		1	NFX1	9	33295418	Silent	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	24238	33295418	107918013	64	9658											
PSAT1	29968	hgsc.bcm.edu;bcgsc.ca	37	9	80923403	80923403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSAT1	NM_021154	exon6	c.A644G	p.D215G	GTGATGACCTGCT	.	146	6	192	0	.	91	G	80923403	A	G	80923403	3	3	71	1	0	0	0	0	1	0	0	0	12644	275	10	2	666	2	PSAT1	9	80923403	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	47627985	80923403	60290028	65	9659											
RAD23B	5887	hgsc.bcm.edu;bcgsc.ca	37	9	110091920	110091920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAD23B	NM_002874	exon10	c.A1213G	p.N405D	CAGCAGAACTTTG	.	72	4	85	0	.	228	G	110091920	A	G	110091920	3	3	71	1	0	0	0	0	1	0	0	0	12983	246	9	2	1251	2	RAD23B	9	110091920	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	29168517	110091920	31121511	66	9660											
CACNA1B	774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140772543	140772543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1B	NM_001243812	exon1	c.C158T	p.A53V	AGCGCGCGCGGAC	.	170	75	98	0	.	138	T	140772543	C	T	140772543	3	4	71	1	0	0	0	0	1	0	0	0	2539	768	27	1	160	1	CACNA1B	9	140772543	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	30680623	140772543	440888	67	9661											
PLA2G12B	84647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74702445	74702445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2G12B	NM_032562	exon2	c.G265T	p.G89C	AGGAGCCGCAGCC	.	62	27	58	0	.	91	A	74702445	C	A	74702445	3	1	71	1	0	0	0	0	1	0	0	0	11991	652	23	1	334	1	PLA2G12B	10	74702445	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		74702445	60832302	68	9662											
SEC31B	25956	hgsc.bcm.edu;bcgsc.ca	37	10	102275905	102275905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC31B	NM_015490	exon3	c.A151G	p.R51G	GGTCCCTGAAATC	.	91	4	116	0	.	91	C	102275905	T	C	102275905	3	2	71	1	0	0	0	0	1	0	0	0	13999	1579	55	2	3484	2	SEC31B	10	102275905	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	27573460	102275905	33258842	69	9663											
PDZD7	79955	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102777929	102777929	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDZD7	NM_001195263	exon9	c.C1449T	p.D483D	GCGCCCGTCCCGC	.	138	39	104	0	.	136	A	102777929	G	A	102777929	2	1	71	1	0	0	0	0	0	0	0	1	11704	1136	40	1		1	PDZD7	10	102777929	Silent	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	502024	102777929	32756818	70	9664											
PDCD11	22984	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105174798	105174798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD11	NM_014976	exon12	c.G1408A	p.V470M	ATGCTGGTGAAGG	.	151	48	110	0	.	275	A	105174798	G	A	105174798	3	1	71	1	0	0	0	0	1	0	0	0	11617	1261	44	3	1450	3	PDCD11	10	105174798	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	2396869	105174798	30359949	71	9665											
XPNPEP1	7511	hgsc.bcm.edu;bcgsc.ca	37	10	111635319	111635319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPNPEP1	NM_020383	exon15	c.A1358G	p.E453G	TACACCTCATCCA	.	90	4	112	0	.	94	C	111635319	T	C	111635319	3	2	71	1	0	0	0	0	1	0	0	0	17439	1551	54	2	670	2	XPNPEP1	10	111635319	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	6460521	111635319	23899428	72	9666											
FAM160B1	57700	hgsc.bcm.edu;bcgsc.ca	37	10	116608429	116608429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM160B1	NM_020940	exon13	c.A1736G	p.D579G	CGGATGACGCAAA	.	99	4	94	0	.	91	G	116608429	A	G	116608429	3	3	71	1	0	0	0	0	1	0	0	0	5470	275	10	2	1786	2	FAM160B1	10	116608429	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	4973110	116608429	18926318	73	9667											
PNLIPRP3	119548	hgsc.bcm.edu;bcgsc.ca	37	10	118231366	118231366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNLIPRP3	NM_001011709	exon10	c.A1147G	p.K383E	GTTAGGAAAACTG	.	118	6	132	0	.	91	G	118231366	A	G	118231366	3	3	71	1	0	0	0	0	1	0	0	0	12152	247	9	2	1185	2	PNLIPRP3	10	118231366	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	1622937	118231366	17303381	74	9668											
DMBT1	1755	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402895	124402895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DMBT1	NM_007329	exon53	c.G7223A	p.R2408Q	CACGCCGAGAAGA	.	165	46	117	0	.	494	A	124402895	G	A	124402895	3	1	71	1	0	0	0	0	1	0	0	0	4577	1058	37	1	7433	1	DMBT1	10	124402895	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	6171529	124402895	11131852	75	9669											
MUC2	4583	hgsc.bcm.edu;bcgsc.ca	37	11	1094691	1094691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC2	NM_002457	exon32	c.G5767T	p.G1923W	ACGACCGGGTCAT	.	164	7	101	0	.	90	T	1094691	G	T	1094691	3	4	71	1	0	0	0	0	1	0	0	0	9975	1116	39	1	5893	1	MUC2	11	1094691	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10		1094691	133911825	76	9670											
KCNC1	3746	broad.mit.edu;mdanderson.org	37	11	17757951	17757951	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNC1	NM_004976	exon1	c.G402A	p.A134A	CGACGCGGACGCC	.	22	8	10	0	.	91	A	17757951	G	A	17757951	2	1	71	1	0	0	0	0	0	0	0	1	8014	1103	39	1		1	KCNC1	11	17757951	Silent	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	16663260	17757951	117248565	77	9671											
PTPN5	84867	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18763990	18763990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN5	NM_032781	exon7	c.C544T	p.R182C	ACTGGCGCCTGTC	.	121	60	95	0	.	229	A	18763990	G	A	18763990	3	1	71	1	0	0	0	0	1	0	0	0	12791	1087	38	1	1189	1	PTPN5	11	18763990	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	1006039	18763990	116242526	78	9672											
TCP11L1	55346	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33083146	33083146	+	Silent	SNP	C	C	T	rs145755006		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11L1	NM_001145541	exon7	c.C846T	p.H282H	TAAACACGCCCTG	.	123	29	92	0	C|1.000;T|0.000	90	T	33083146	C	T	33083146	2	4	71	1	0	0	0	0	0	0	0	1	15711	535	19	1		1	TCP11L1	11	33083146	Silent	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	14319156	33083146	101923370	79	9673											
RNF121	55298	hgsc.bcm.edu;bcgsc.ca	37	11	71671841	71671841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF121	NM_018320	exon3	c.T147C	p.A49A	TGAAGCTATGCAT	.	119	5	85	0	.	226	C	71671841	T	C	71671841	2	2	71	1	0	0	0	0	0	0	0	1	13431	1509	53	2		2	RNF121	11	71671841	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	38588695	71671841	63334675	80	9674											
PCF11	51585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82877693	82877693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCF11	NM_015885	exon5	c.T1754C	p.V585A	AGAATGTAGAAAA	.	122	57	100	0	.	23	C	82877693	T	C	82877693	3	2	71	1	0	0	0	0	1	0	0	0	11573	1638	57	2	1772	2	PCF11	11	82877693	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	11205852	82877693	52128823	81	9675											
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	102991458	102991458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC2H1	NM_001377	exon8	c.T1175C	p.I392T	AGATTATTGCACC	.	72	4	38	0	.	68	C	102991458	T	C	102991458	3	2	71	1	0	0	0	0	1	0	0	0	4846	1493	52	2	1205	2	DYNC2H1	11	102991458	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	20113765	102991458	32015058	82	9676											
SIK3	23387	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	116744713	116744713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIK3	NM_025164	exon12	c.A1313G	p.Q438R	GGAGCCTGGGGGT	.	128	30	90	0	.	919	C	116744713	T	C	116744713	3	2	71	1	0	0	0	0	1	0	0	0	14319	1580	55	2	2526	2	SIK3	11	116744713	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	13753255	116744713	18261803	83	9677											
IQSEC3	440073	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	271222	271222	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IQSEC3	NM_001170738	exon8	c.C2574A	p.G858G	TGTGGGCATGAAG	.	81	41	120	1	.	560	A	271222	C	A	271222	2	1	71	1	0	0	0	0	0	0	0	1	7819	697	25	3		3	IQSEC3	12	271222	Silent	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		271222	133580673	84	9678											
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9349247	9349247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PZP	NM_002864	exon9	c.A902G	p.H301R	TTGGTGTGTACTT	.	69	4	84	0	.	157	C	9349247	T	C	9349247	3	2	71	1	0	0	0	0	1	0	0	0	12869	1696	59	2	3658	2	PZP	12	9349247	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	9078025	9349247	124502648	85	9679											
PLCZ1	89869	hgsc.bcm.edu;bcgsc.ca	37	12	18872429	18872429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCZ1	NM_033123	exon5	c.T505C	p.S169P	TATGTGAAGATGA	.	81	4	104	0	.	228	G	18872429	A	G	18872429	3	3	71	1	0	0	0	0	1	0	0	0	12044	246	9	2	1365	2	PLCZ1	12	18872429	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	9523182	18872429	114979466	86	9680											
ABCC9	10060	hgsc.bcm.edu;bcgsc.ca	37	12	22012588	22012588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCC9	NM_005691	exon20	c.A2437G	p.S813G	CCCCACTCAGGTT	.	63	4	78	0	.	96	C	22012588	T	C	22012588	3	2	71	1	0	0	0	0	1	0	0	0	59	1551	54	2	2430	2	ABCC9	12	22012588	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	3140159	22012588	111839307	87	9681											
KRAS	3845	hgsc.bcm.edu;bcgsc.ca	37	12	25368464	25368464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRAS	NM_033360	exon5	c.A481G	p.R161G	TCTCCCTCACCAA	.	67	4	138	0	.	92875	C	25368464	T	C	25368464	3	2	71	1	0	0	0	0	1	0	0	0	8438	1550	54	2	213	2	KRAS	12	25368464	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	3355876	25368464	108483431	88	9682											
BAZ2A	11176	hgsc.bcm.edu;bcgsc.ca	37	12	56997486	56997486	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2A	NM_013449	exon18	c.3045-2A>G	.	TCAGCCTTGAAAT	.	77	4	67	0	.	22	C	56997486	T	C	56997486	5	2	71	1	0	0	0	0	0	0	1	0	1331	1623	56	2	2726	2	BAZ2A	12	56997486	Splice_Site	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	31629022	56997486	76854409	89	9683											
TBC1D15	64786	hgsc.bcm.edu;bcgsc.ca	37	12	72300901	72300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D15	NM_022771	exon12	c.T1334C	p.M445T	ACTGTATGTATGA	.	97	4	89	0	.	90	C	72300901	T	C	72300901	3	2	71	1	0	0	0	0	1	0	0	0	15601	1464	51	2	1504	2	TBC1D15	12	72300901	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	15303415	72300901	61550994	90	9684											
CENPJ	55835	hgsc.bcm.edu;bcgsc.ca	37	13	25480336	25480336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPJ	NM_018451	exon7	c.T1840C	p.S614P	TGGAAGACATCCG	.	87	6	103	0	.	92	G	25480336	A	G	25480336	3	3	71	1	0	0	0	0	1	0	0	0	3234	275	10	2	2220	2	CENPJ	13	25480336	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		25480336	89689542	91	9685											
STARD13	90627	hgsc.bcm.edu;bcgsc.ca	37	13	33684128	33684128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STARD13	NM_178006	exon12	c.T2929C	p.W977R	CGTCCCACAGGTG	.	114	5	145	0	.	94	G	33684128	A	G	33684128	3	3	71	1	0	0	0	0	1	0	0	0	15255	159	6	2	424	2	STARD13	13	33684128	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	8203792	33684128	81485750	92	9686											
PHF11	51131	hgsc.bcm.edu;bcgsc.ca	37	13	50098318	50098318	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHF11	NM_001040443	exon8	c.A735G	p.P245P	AATTCCAGAAAAA	.	88	4	145	0	.	90	G	50098318	A	G	50098318	2	3	71	1	0	0	0	0	0	0	0	1	11822	175	7	2		2	PHF11	13	50098318	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	16414190	50098318	65071560	93	9687											
RIPK3	11035	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	24805506	24805506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RIPK3	NM_006871	exon10	c.G1432A	p.G478S	CCAAGCCCCATGT	.	101	38	88	0	.	946	T	24805506	C	T	24805506	3	4	71	1	0	0	0	0	1	0	0	0	13382	623	22	3	128	3	RIPK3	14	24805506	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		24805506	82544034	94	9688											
SOS2	6655	hgsc.bcm.edu;bcgsc.ca	37	14	50647366	50647366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS2	NM_006939	exon7	c.A893G	p.Q298R	ATGTCCTGTGATA	.	56	4	48	0	.	849	C	50647366	T	C	50647366	3	2	71	1	0	0	0	0	1	0	0	0	14937	1580	55	2	3173	2	SOS2	14	50647366	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	25841860	50647366	56702174	95	9689											
NDUFAF1	51103	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41688824	41688824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDUFAF1	NM_016013	exon2	c.G434T	p.G145V	CTGCCTCCAATCG	.	269	94	250	0	.	91	A	41688824	C	A	41688824	3	1	71	1	0	0	0	0	1	0	0	0	10274	855	30	3	565	3	NDUFAF1	15	41688824	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		41688824	60842568	96	9690											
UBR1	197131	hgsc.bcm.edu;bcgsc.ca	37	15	43314950	43314950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBR1	NM_174916	exon26	c.A2789G	p.Q930R	GCTTTTTGAAGCT	.	65	4	54	0	.	91	C	43314950	T	C	43314950	3	2	71	1	0	0	0	0	1	0	0	0	16898	1812	63	2	2548	2	UBR1	15	43314950	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	1626126	43314950	59216442	97	9691											
MYO5C	55930	hgsc.bcm.edu;bcgsc.ca	37	15	52571842	52571842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5C	NM_018728	exon3	c.T168C	p.S56S	AGGCAGAGATTCT	.	79	4	61	0	.	145	G	52571842	A	G	52571842	2	3	71	1	0	0	0	0	0	0	0	1	10080	291	11	2		2	MYO5C	15	52571842	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	9256892	52571842	49959550	98	9692											
MYO9A	4649	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72193622	72193622	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO9A	NM_006901	exon23	c.C3060T	p.L1020L	TCTGCGGAGCACC	.	140	57	132	0	.	93	A	72193622	G	A	72193622	2	1	71	1	0	0	0	0	0	0	0	1	10084	1161	41	3		3	MYO9A	15	72193622	Silent	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	19621780	72193622	30337770	99	9693											
ZNF598	90850	hgsc.bcm.edu;bcgsc.ca	37	16	2053113	2053113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF598	NM_178167	exon5	c.T344C	p.L115P	TGCTGCAGCAGCT	.	59	4	52	0	.	432	G	2053113	A	G	2053113	3	3	71	1	0	0	0	0	1	0	0	0	18025	188	7	2	2410	2	ZNF598	16	2053113	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		2053113	88301640	100	9694											
SRRM2	23524	hgsc.bcm.edu;bcgsc.ca	37	16	2812846	2812846	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRRM2	NM_016333	exon11	c.T2317C	p.L773L	TCTCGCTTGTCTT	.	63	4	67	0	.	93	C	2812846	T	C	2812846	2	2	71	1	0	0	0	0	0	0	0	1	15168	1606	56	2		2	SRRM2	16	2812846	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	759733	2812846	87541907	101	9695											
GGA2	23062	hgsc.bcm.edu;bcgsc.ca	37	16	23481435	23481435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GGA2	NM_015044	exon15	c.T1502C	p.L501P	AAGTGGAGCAGAA	.	71	4	87	0	.	91	G	23481435	A	G	23481435	3	3	71	1	0	0	0	0	1	0	0	0	6353	304	11	2	351	2	GGA2	16	23481435	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	20668589	23481435	66873318	102	9696											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30976976	30976976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SETD1A	NM_014712	exon8	c.G1774A	p.G592S	CGGGGTGGCTCAC	.	83	34	55	0	.	93	A	30976976	G	A	30976976	3	1	71	1	0	0	0	0	1	0	0	0	14130	1348	47	3	1800	3	SETD1A	16	30976976	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	7495541	30976976	59377777	103	9697											
ZNF423	23090	hgsc.bcm.edu;bcgsc.ca	37	16	49672029	49672029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF423	NM_015069	exon4	c.A1034G	p.H345R	TGCCGGTGGCTGT	.	89	6	72	0	.	228	C	49672029	T	C	49672029	3	2	71	1	0	0	0	0	1	0	0	0	17895	1696	59	2	2840	2	ZNF423	16	49672029	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	18695053	49672029	40682724	104	9698											
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51173561	51173561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL1	NM_002968	exon2	c.C2572T	p.L858F	TCTCGAGGGGCAA	.	183	8	155	0	.	98	A	51173561	G	A	51173561	3	1	71	1	0	0	0	0	1	0	0	0	13810	1000	35	3	1410	3	SALL1	16	51173561	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	1501532	51173561	39181192	105	9699											
NUP93	9688	hgsc.bcm.edu;bcgsc.ca	37	16	56867148	56867148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP93	NM_014669	exon13	c.A1367G	p.N456S	CGGTGAACCAGCA	.	150	6	127	0	.	205	G	56867148	A	G	56867148	3	3	71	1	0	0	0	0	1	0	0	0	10772	43	2	2	1413	2	NUP93	16	56867148	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	5693587	56867148	33487605	106	9700											
CNOT1	23019	hgsc.bcm.edu;bcgsc.ca	37	16	58562491	58562491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT1	NM_016284	exon44	c.A6341G	p.H2114R	CCATAATGGTAAT	.	71	4	61	0	.	95	C	58562491	T	C	58562491	3	2	71	1	0	0	0	0	1	0	0	0	3617	1464	51	2	813	2	CNOT1	16	58562491	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	1695343	58562491	31792262	107	9701											
HSF4	3299	hgsc.bcm.edu;bcgsc.ca	37	16	67203201	67203201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSF4	NM_001040667	exon14	c.A1274G	p.E425G	TTCCAGAGCGGGG	.	72	4	59	0	.	90	G	67203201	A	G	67203201	3	3	71	1	0	0	0	0	1	0	0	0	7398	304	11	2	1334	2	HSF4	16	67203201	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	8640710	67203201	23151552	108	9702											
COG4	25839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70548316	70548316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG4	NM_015386	exon4	c.G466A	p.E156K	CCTGCTCATAATC	.	107	24	101	0	.	90	T	70548316	C	T	70548316	3	4	71	1	0	0	0	0	1	0	0	0	3660	835	29	3	1967	3	COG4	16	70548316	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	3345115	70548316	19806437	109	9703											
BCAR1	9564	hgsc.bcm.edu;bcgsc.ca	37	16	75269535	75269535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAR1	NM_001170714	exon6	c.C1400A	p.P467Q	TCTGCCGGGGCTT	.	153	10	134	0	.	1145	T	75269535	G	T	75269535	3	4	71	1	0	0	0	0	1	0	0	0	1348	1116	39	1	1362	1	BCAR1	16	75269535	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	4721219	75269535	15085218	110	9704											
ADAMTS18	170692	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77327037	77327037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS18	NM_199355	exon20	c.G3125T	p.G1042V	ACACAGCCCTCCT	.	80	23	62	0	.	1036	A	77327037	C	A	77327037	3	1	71	1	0	0	0	0	1	0	0	0	263	739	26	3	556	3	ADAMTS18	16	77327037	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	2057502	77327037	13027716	111	9705											
POLR2A	5430	hgsc.bcm.edu;bcgsc.ca	37	17	7416095	7416095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR2A	NM_000937	exon28	c.A4609G	p.S1537G	ATAGGGAGTGGAA	.	48	4	57	0	.	91	G	7416095	A	G	7416095	3	3	71	1	0	0	0	0	1	0	0	0	12214	304	11	2	4719	2	POLR2A	17	7416095	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		7416095	73779115	112	9706											
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G473A	p.R158H	ATGGCGCGGACGC	.	90	53	153	0	.	70225	T	7578457	C	T	7578457	3	4	71	1	0	0	0	0	1	0	0	0	16378	768	27	1	825	1	TP53	17	7578457	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	162362	7578457	73616753	113	9707											
RAI1	10743	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17700882	17700882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAI1	NM_030665	exon3	c.C4620A	p.L1540L	GCGCCTCACTCGG	.	256	87	227	0	.	91	A	17700882	C	A	17700882	2	1	71	1	0	0	0	0	0	0	0	1	13007	813	29	3		3	RAI1	17	17700882	Silent	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	10122425	17700882	63494328	114	9708											
SLC47A2	146802	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19583316	19583316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC47A2	NM_152908	exon16	c.G1537T	p.A513S	TCTCTGCTCTCTG	.	87	28	64	0	.	90	A	19583316	C	A	19583316	3	1	71	1	0	0	0	0	1	0	0	0	14648	797	28	3	279	3	SLC47A2	17	19583316	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	1882434	19583316	61611894	115	9709											
THRA	7067	hgsc.bcm.edu;bcgsc.ca	37	17	38230771	38230771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THRA	NM_001190918	exon2	c.T30C	p.C10C	GGAGTGTGGGTCA	.	117	5	83	0	.	186	C	38230771	T	C	38230771	2	2	71	1	0	0	0	0	0	0	0	1	15870	1702	59	2		2	THRA	17	38230771	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	18647455	38230771	42964439	116	9710											
WIPF2	147179	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38430226	38430226	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WIPF2	NM_133264	exon6	c.T1155C	p.S385S	AGATTCTATCACC	.	68	24	52	0	.	93	C	38430226	T	C	38430226	2	2	71	1	0	0	0	0	0	0	0	1	17365	1509	53	2		2	WIPF2	17	38430226	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	199455	38430226	42764984	117	9711											
ATXN7L3	56970	hgsc.bcm.edu;bcgsc.ca	37	17	42273429	42273429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L3	NM_020218	exon6	c.A517G	p.R173G	TGGATCTTCGAGG	.	77	4	95	0	.	68	C	42273429	T	C	42273429	3	2	71	1	0	0	0	0	1	0	0	0	1218	1617	56	2	575	2	ATXN7L3	17	42273429	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	3843203	42273429	38921781	118	9712											
SCN4A	6329	hgsc.bcm.edu;bcgsc.ca	37	17	62048557	62048557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN4A	NM_000334	exon5	c.T668C	p.V223A	CGCAGCACCCGGA	.	71	5	42	0	.	93	G	62048557	A	G	62048557	3	3	71	1	0	0	0	0	1	0	0	0	13920	159	6	2	4922	2	SCN4A	17	62048557	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	19775128	62048557	19146653	119	9713											
GNA13	10672	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	63014373	63014373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNA13	NM_006572	exon3	c.C559T	p.P187S	TTACTGGTTCTCC	.	244	59	200	0	.	227	A	63014373	G	A	63014373	3	1	71	1	0	0	0	0	1	0	0	0	6501	1261	44	3	582	3	GNA13	17	63014373	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	965816	63014373	18180837	120	9714											
FDXR	2232	hgsc.bcm.edu;bcgsc.ca	37	17	72860316	72860316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FDXR	NM_001258012	exon9	c.A1085G	p.D362G	CGCCCATCTGGTG	.	94	6	54	0	.	226	C	72860316	T	C	72860316	3	2	71	1	0	0	0	0	1	0	0	0	5807	1435	50	2	535	2	FDXR	17	72860316	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	9845943	72860316	8334894	121	9715											
AATK	9625	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	79094085	79094085	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AATK	NM_001080395	exon11	c.G3651C	p.L1217L	CTCGGACAGCAGG	.	175	39	105	0	.	933	G	79094085	C	G	79094085	2	3	71	1	0	0	0	0	0	0	0	1	26	465	17	4		4	AATK	17	79094085	Silent	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	6233769	79094085	2101125	122	9716											
DUS1L	64118	hgsc.bcm.edu;bcgsc.ca	37	17	80020818	80020818	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUS1L	NM_022156	exon5	c.T429C	p.P143P	CGTGACAGGAACA	.	56	4	47	0	.	91	G	80020818	A	G	80020818	2	3	71	1	0	0	0	0	0	0	0	1	4805	175	7	2		2	DUS1L	17	80020818	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	926733	80020818	1174392	123	9717											
SMCHD1	23347	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2750117	2750117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCHD1	NM_015295	exon31	c.C4004A	p.P1335H	TTGCCCCTAGGTA	.	94	23	106	0	.	46	A	2750117	C	A	2750117	3	1	71	1	0	0	0	0	1	0	0	0	14788	681	24	3	4126	3	SMCHD1	18	2750117	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		2750117	75327131	124	9718											
MKNK2	2872	hgsc.bcm.edu;bcgsc.ca	37	19	2041918	2041918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKNK2	NM_017572	exon11	c.T866C	p.L289P	CCGCTGAGTAGGA	.	54	4	71	0	.	978	G	2041918	A	G	2041918	3	3	71	1	0	0	0	0	1	0	0	0	9605	304	11	2	642	2	MKNK2	19	2041918	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		2041918	57087065	125	9719											
ELAVL3	1995	hgsc.bcm.edu;bcgsc.ca	37	19	11565448	11565448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELAVL3	NM_001420	exon7	c.A997G	p.T333A	AGTTGGTCATGGT	.	127	6	107	0	.	92	C	11565448	T	C	11565448	3	2	71	1	0	0	0	0	1	0	0	0	5051	1667	58	2	110	2	ELAVL3	19	11565448	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	9523530	11565448	47563535	126	9720											
PBX4	80714	hgsc.bcm.edu;bcgsc.ca	37	19	19681414	19681414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBX4	NM_025245	exon3	c.A422G	p.E141G	TCTAGCTCAGAGT	.	123	5	90	0	.	154	C	19681414	T	C	19681414	3	2	71	1	0	0	0	0	1	0	0	0	11495	1551	54	2	726	2	PBX4	19	19681414	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	8115966	19681414	39447569	127	9721											
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	52569542	52569542	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136499	exon7	c.T1593C	p.H531H	TCTCTGATGTACA	.	37	4	52	0	.	.	G	52569542	A	G	52569542	2	3	71	1	0	0	0	0	0	0	0	1	18186	330	12	2		2	ZNF841	19	52569542	Silent	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	32888128	52569542	6559441	128	9722											
ZNF347	84671	hgsc.bcm.edu;bcgsc.ca	37	19	53645764	53645764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF347	NM_001172675	exon5	c.A320G	p.K107R	TTACTCTTCCCTT	.	119	5	118	0	.	90	C	53645764	T	C	53645764	3	2	71	1	0	0	0	0	1	0	0	0	17858	1609	56	2	2206	2	ZNF347	19	53645764	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	1076222	53645764	5483219	129	9723											
ZNF761	388561	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	53959189	53959189	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF761	NM_001008401	exon7	c.T1428C	p.R476R	TTTCCGTTTCAAA	.	40	10	41	0	.	91	C	53959189	T	C	53959189	2	2	71	1	0	0	0	0	0	0	0	1	18133	1712	60	2		2	ZNF761	19	53959189	Silent	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	313425	53959189	5169794	130	9724											
DPRX	503834	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54140025	54140025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPRX	NM_001012728	exon3	c.T359A	p.V120E	GCCTGGTGTACAC	.	160	52	158	0	.	90	A	54140025	T	A	54140025	3	1	71	1	0	0	0	0	1	0	0	0	4738	1696	59	4	369	4	DPRX	19	54140025	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	180836	54140025	4988958	131	9725											
SYCP2	10388	hgsc.bcm.edu;bcgsc.ca	37	20	58489043	58489043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYCP2	NM_014258	exon11	c.G817A	p.G273R	TGTCTCCAAGCAT	.	149	6	126	0	.	525	T	58489043	C	T	58489043	3	4	71	1	0	0	0	0	1	0	0	0	15429	603	21	3	3911	3	SYCP2	20	58489043	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10		58489043	4536477	132	9726											
DSCAM	1826	hgsc.bcm.edu;bcgsc.ca	37	21	41434820	41434820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSCAM	NM_001271534	exon28	c.A4895G	p.K1632R	AAACTCTTTGCAT	.	89	4	96	0	.	101	C	41434820	T	C	41434820	3	2	71	1	0	0	0	0	1	0	0	0	4768	1609	56	2	1167	2	DSCAM	21	41434820	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10		41434820	6695075	133	9727											
CECR1	51816	hgsc.bcm.edu;bcgsc.ca	37	22	17662863	17662863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CECR1	NM_017424	exon8	c.T1289C	p.M430T	GTGGCCATCAGAG	.	72	4	64	0	.	91	G	17662863	A	G	17662863	3	3	71	1	0	0	0	0	1	0	0	0	3205	217	8	2	254	2	CECR1	22	17662863	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		17662863	33641703	134	9728											
CLTCL1	8218	ucsc.edu;bcgsc.ca	37	22	19189003	19189003	+	Missense_Mutation	SNP	A	A	C	rs112507727		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLTCL1	NM_001835	exon23	c.T3602G	p.V1201G	TCTCCAACTACGG	.	102	0	108	0	A|0.500;C|0.500	230	C	19189003	A	C	19189003	3	2	71	1	0	0	0	0	1	0	0	0	3567	57	2	5	1360	5	CLTCL1	22	19189003	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	1526140	19189003	32115563	135	9729											
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892685	22892685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAME	NM_206954	exon5	c.A416G	p.N139S	GCCCTGTTTCCAG	.	78	21	112	0	.	515	C	22892685	T	C	22892685	3	2	71	1	0	0	0	0	1	0	0	0	12424	1725	60	2	1121	2	PRAME	22	22892685	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	3703682	22892685	28411881	136	9730											
DEPDC5	9681	hgsc.bcm.edu;bcgsc.ca	37	22	32215113	32215113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEPDC5	NM_001242897	exon22	c.A1772G	p.Y591C	GTGGATACACGCC	.	140	8	130	0	.	519	G	32215113	A	G	32215113	3	3	71	1	0	0	0	0	1	0	0	0	4442	391	14	2	1872	2	DEPDC5	22	32215113	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	9322428	32215113	19089453	137	9731											
PICK1	9463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	38470994	38470994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PICK1	NM_012407	exon13	c.C1103T	p.T368I	ACACCACATTGGC	.	118	46	107	0	.	226	T	38470994	C	T	38470994	3	4	71	1	0	0	0	0	1	0	0	0	11881	478	17	3	1149	3	PICK1	22	38470994	Missense_Mutation	SNP	C	TCGA-DD-A39Y-01A-11D-A20W-10	6255881	38470994	12833572	138	9732											
MAGEB16	139604	hgsc.bcm.edu;bcgsc.ca	37	X	35820408	35820408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEB16	NM_001099921	exon2	c.A95G	p.K32R	TCTCCAAGGCTCT	.	88	4	87	0	.	66	G	35820408	A	G	35820408	3	3	71	1	0	0	0	0	1	0	0	0	9174	72	3	2	97	2	MAGEB16	23	35820408	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10		35820408	119450152	139	9733											
AKAP4	8852	hgsc.bcm.edu;bcgsc.ca	37	X	49963345	49963345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP4	NM_003886	exon2	c.A86G	p.Y29C	GGGTTGTAGAGAT	.	119	7	79	0	.	540	C	49963345	T	C	49963345	3	2	71	1	0	0	0	0	1	0	0	0	453	1638	57	2	2498	2	AKAP4	23	49963345	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	14142937	49963345	105307215	140	9734											
PHKA1	5255	hgsc.bcm.edu;bcgsc.ca	37	X	71873287	71873287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKA1	NM_001172436	exon11	c.A1135G	p.R379G	TCACCCTGTCAGG	.	85	4	88	0	.	134	C	71873287	T	C	71873287	3	2	71	1	0	0	0	0	1	0	0	0	11843	1579	55	2	2624	2	PHKA1	23	71873287	Missense_Mutation	SNP	T	TCGA-DD-A39Y-01A-11D-A20W-10	21909942	71873287	83397273	141	9735											
DCX	1641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	110574142	110574142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCX	NM_001195553	exon5	c.C936A	p.N312K	TTGGTCGTTACCT	.	109	70	87	0	.	554	T	110574142	G	T	110574142	3	4	71	1	0	0	0	0	1	0	0	0	4318	1136	40	1	173	1	DCX	23	110574142	Missense_Mutation	SNP	G	TCGA-DD-A39Y-01A-11D-A20W-10	38700855	110574142	44696418	142	9736											
L1CAM	3897	hgsc.bcm.edu;bcgsc.ca	37	X	153128287	153128287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L1CAM	NM_000425	exon28	c.T3605C	p.L1202P	CTGCCCAGGGGCT	.	72	4	63	0	.	138	G	153128287	A	G	153128287	3	3	71	1	0	0	0	0	1	0	0	0	8588	188	7	2	172	2	L1CAM	23	153128287	Missense_Mutation	SNP	A	TCGA-DD-A39Y-01A-11D-A20W-10	42554145	153128287	2142273	143	9737											
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35334624	35334624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DLGAP3	NM_001080418	exon7	c.C2067T	p.G689G	TGCCAGGCCCTCC	.	64	25	96	0	.	71	A	35334624	G	A	35334624	2	1	72	1	0	0	0	0	0	0	0	1	4561	1190	42	3		3	DLGAP3	1	35334624	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10		35334624	213915997	1	9738											
OSCP1	127700	hgsc.bcm.edu;bcgsc.ca	37	1	36889022	36889022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSCP1	NM_145047	exon5	c.T562C	p.F188L	ACACAAAGCGACC	.	57	5	91	0	.	4	G	36889022	A	G	36889022	3	3	72	1	0	0	0	0	1	0	0	0	11286	72	3	2	601	2	OSCP1	1	36889022	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	1554398	36889022	212361599	2	9739											
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40705106	40705106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RLF	NM_012421	exon8	c.A4732G	p.S1578G	ATGAGTAGTGCCT	.	42	13	110	0	.	93	G	40705106	A	G	40705106	3	3	72	1	0	0	0	0	1	0	0	0	13389	420	15	2	4762	2	RLF	1	40705106	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3816084	40705106	208545515	3	9740											
MRPL37	51253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54681856	54681856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPL37	NM_016491	exon6	c.G1033A	p.V345M	CAGAGCGTGGGCA	.	170	7	361	0	.	90	A	54681856	G	A	54681856	3	1	72	1	0	0	0	0	1	0	0	0	9800	1145	40	1	1055	1	MRPL37	1	54681856	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	13976750	54681856	194568765	4	9741											
CTH	1491	hgsc.bcm.edu;bcgsc.ca	37	1	70881689	70881689	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTH	NM_153742	exon2	c.A219G	p.K73K	TGAAAAAGCAGTG	.	71	4	115	0	.	91	G	70881689	A	G	70881689	2	3	72	1	0	0	0	0	0	0	0	1	4009	69	3	2		2	CTH	1	70881689	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	16199833	70881689	178368932	5	9742											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94502755	94502755	+	Silent	SNP	C	C	A	rs147884766	byfrequency;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA4	NM_000350	exon25	c.G3759T	p.T1253T	AGCCAGCGTCTCC	.	75	35	132	0	C|0.998;T|0.002	162	A	94502755	C	A	94502755	2	1	72	1	0	0	0	0	0	0	0	1	34	755	27	1		1	ABCA4	1	94502755	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	23621066	94502755	154747866	6	9743											
CD1E	913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325760	158325760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CD1E	NM_001042584	exon4	c.G769A	p.G257R	CAGCGAGGGGACG	.	251	67	342	1	.	93	A	158325760	G	A	158325760	3	1	72	1	0	0	0	0	1	0	0	0	2978	1000	35	3	783	3	CD1E	1	158325760	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	63823005	158325760	90924861	7	9744											
SLAMF7	57823	hgsc.bcm.edu;bcgsc.ca	37	1	160719673	160719673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLAMF7	NM_021181	exon3	c.A439G	p.T147A	TGTGTGACCAATC	.	95	4	156	0	.	93	G	160719673	A	G	160719673	3	3	72	1	0	0	0	0	1	0	0	0	14369	275	10	2	449	2	SLAMF7	1	160719673	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	2393913	160719673	88530948	8	9745											
RGS4	5999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163042190	163042190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RGS4	NM_001102445	exon3	c.A341G	p.K114R	GTGCAAAAGATAT	.	71	20	93	0	.	652	G	163042190	A	G	163042190	3	3	72	1	0	0	0	0	1	0	0	0	13307	14	1	2	351	2	RGS4	1	163042190	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	2322517	163042190	86208431	9	9746											
RFWD2	64326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175958553	175958553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RFWD2	NM_022457	exon16	c.C1792T	p.H598Y	TACGGTGTCCTTT	.	201	45	225	1	.	659	A	175958553	G	A	175958553	3	1	72	1	0	0	0	0	1	0	0	0	13260	1377	48	3	423	3	RFWD2	1	175958553	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	12916363	175958553	73292068	10	9747											
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186275693	186275693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRG4	NM_005807	exon7	c.A842G	p.E281G	ATAAAGAGACAAC	.	86	5	112	0	.	91	G	186275693	A	G	186275693	3	3	72	1	0	0	0	0	1	0	0	0	12481	304	11	2	864	2	PRG4	1	186275693	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	10317140	186275693	62974928	11	9748											
SLC30A3	7781	hgsc.bcm.edu;bcgsc.ca	37	2	27481800	27481800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC30A3	NM_003459	exon2	c.T98C	p.L33P	GTGAAGAGACTGA	.	91	4	134	0	.	90	G	27481800	A	G	27481800	3	3	72	1	0	0	0	0	1	0	0	0	14556	304	11	2	1096	2	SLC30A3	2	27481800	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		27481800	215717573	12	9749											
NLRC4	58484	hgsc.bcm.edu;bcgsc.ca	37	2	32449645	32449645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLRC4	NM_001199138	exon9	c.T2972C	p.L991S	TTGGATAACACTT	.	75	4	135	0	.	276	G	32449645	A	G	32449645	3	3	72	1	0	0	0	0	1	0	0	0	10469	372	13	2	106	2	NLRC4	2	32449645	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	4967845	32449645	210749728	13	9750											
PPM1B	5495	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	44436409	44436409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPM1B	NM_001033556	exon3	c.G907A	p.D303N	GTCTCAGATGAAG	.	25	4	54	0	.	227	A	44436409	G	A	44436409	3	1	72	1	0	0	0	0	1	0	0	0	12336	942	33	3	913	3	PPM1B	2	44436409	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	11986764	44436409	198762964	14	9751											
PNPT1	87178	hgsc.bcm.edu;bcgsc.ca	37	2	55906857	55906857	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PNPT1	NM_033109	exon8	c.T639C	p.T213T	ATTTAAAGTACTA	.	59	4	144	0	.	90	G	55906857	A	G	55906857	2	3	72	1	0	0	0	0	0	0	0	1	12173	59	3	2		2	PNPT1	2	55906857	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	11470448	55906857	187292516	15	9752											
PUS10	150962	hgsc.bcm.edu;broad.mit.edu	37	2	61175205	61175205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS10	NM_144709	exon16	c.G1424A	p.R475H	TGGAGGCGGAAGT	.	109	5	208	0	.	291	T	61175205	C	T	61175205	3	4	72	1	0	0	0	0	1	0	0	0	12831	768	27	1	177	1	PUS10	2	61175205	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	5268348	61175205	182024168	16	9753											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71592804	71592804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF638	NM_014497	exon6	c.G1963T	p.V655L	AAACAGGTGTCTG	.	118	47	198	0	.	94	T	71592804	G	T	71592804	3	4	72	1	0	0	0	0	1	0	0	0	18052	1261	44	3	1981	3	ZNF638	2	71592804	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	10417599	71592804	171606569	17	9754											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73716837	73716837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALMS1	NM_015120	exon10	c.A7748G	p.K2583R	ATGAAAAGGGATG	.	50	22	118	0	.	142	G	73716837	A	G	73716837	3	3	72	1	0	0	0	0	1	0	0	0	535	72	3	2	7786	2	ALMS1	2	73716837	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	2124033	73716837	169482536	18	9755											
WDR33	55339	hgsc.bcm.edu;bcgsc.ca	37	2	128480841	128480841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDR33	NM_018383	exon12	c.A1277G	p.D426G	ACTCCATCTTCAG	.	85	4	107	0	.	90	C	128480841	T	C	128480841	3	2	72	1	0	0	0	0	1	0	0	0	17284	1435	50	2	2777	2	WDR33	2	128480841	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	54764004	128480841	114718532	19	9756											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152534626	152534626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEB	NM_004543	exon33	c.C3331T	p.L1111L	GAACCAGTTTAGG	.	227	94	382	1	.	145	A	152534626	G	A	152534626	2	1	72	1	0	0	0	0	0	0	0	1	10302	1020	36	3		3	NEB	2	152534626	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	24053785	152534626	90664747	20	9757											
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153435453	153435453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon8	c.C757G	p.L253V	ATTGCACTAAGCC	.	50	19	116	0	.	516	G	153435453	C	G	153435453	3	3	72	1	0	0	0	0	1	0	0	0	5952	564	20	4	787	4	FMNL2	2	153435453	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	900827	153435453	89763920	21	9758											
FMNL2	114793	hgsc.bcm.edu;bcgsc.ca	37	2	153486415	153486415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon20	c.A2546G	p.D849G	GTTTAGATCTGGT	.	87	4	141	0	.	516	G	153486415	A	G	153486415	3	3	72	1	0	0	0	0	1	0	0	0	5952	333	12	2	2624	2	FMNL2	2	153486415	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	50962	153486415	89712958	22	9759											
MARCH7	64844	hgsc.bcm.edu;bcgsc.ca	37	2	160615791	160615791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH7	NM_022826	exon7	c.T1838C	p.L613P	TGGAGCTTAACCT	.	87	4	158	0	.	68	C	160615791	T	C	160615791	3	2	72	1	0	0	0	0	1	0	0	0	9306	1609	56	2	1860	2	MARCH7	2	160615791	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	7129376	160615791	82583582	23	9760											
SCN3A	6328	hgsc.bcm.edu;bcgsc.ca	37	2	166019086	166019086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCN3A	NM_001081676	exon8	c.A947G	p.K316R	TAATCCTTCCAGT	.	76	4	138	0	.	141	C	166019086	T	C	166019086	3	2	72	1	0	0	0	0	1	0	0	0	13918	1609	56	2	5139	2	SCN3A	2	166019086	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	5403295	166019086	77180287	24	9761											
XIRP2	129446	hgsc.bcm.edu;bcgsc.ca	37	2	168099632	168099632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	XIRP2	NM_152381	exon9	c.T1730C	p.I577T	AGTCCATTAGATG	.	89	5	191	0	.	104	C	168099632	T	C	168099632	3	2	72	1	0	0	0	0	1	0	0	0	17427	1493	52	2	1760	2	XIRP2	2	168099632	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	2080546	168099632	75099741	25	9762											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170103365	170103365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRP2	NM_004525	exon21	c.G3040A	p.E1014K	CCCCCTCGCATGT	.	149	51	259	0	.	175	T	170103365	C	T	170103365	3	4	72	1	0	0	0	0	1	0	0	0	8956	893	31	1	11163	1	LRP2	2	170103365	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	2003733	170103365	73096008	26	9763											
RAPGEF4	11069	hgsc.bcm.edu;bcgsc.ca	37	2	173852991	173852991	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAPGEF4	NM_007023	exon13	c.T1218C	p.I406I	AGTCATTTACGGC	.	57	4	74	0	.	274	C	173852991	T	C	173852991	2	2	72	1	0	0	0	0	0	0	0	1	13046	1829	64	2		2	RAPGEF4	2	173852991	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	3749626	173852991	69346382	27	9764											
C2orf88	84281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191064868	191064868	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C2orf88	NM_001042519	exon2	c.G282A	p.G94G	TGAGGGGCCTTGA	.	135	23	233	0	.	68	A	191064868	G	A	191064868	2	1	72	1	0	0	0	0	0	0	0	1	2202	1190	42	3		3	C2orf88	2	191064868	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	17211877	191064868	52134505	28	9765											
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu	37	2	197654717	197654717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GTF3C3	NM_001206774	exon5	c.T613C	p.F205L	ACTCAAACTGCAA	.	84	4	156	0	.	97	G	197654717	A	G	197654717	3	3	72	1	0	0	0	0	1	0	0	0	6874	43	2	2	2103	2	GTF3C3	2	197654717	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	6589849	197654717	45544656	29	9766											
SPATS2L	26010	hgsc.bcm.edu;bcgsc.ca	37	2	201334662	201334662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATS2L	NM_001100423	exon11	c.A983G	p.D328G	AATATGACGAGGA	.	125	6	174	0	.	48	G	201334662	A	G	201334662	3	3	72	1	0	0	0	0	1	0	0	0	15019	275	10	2	1017	2	SPATS2L	2	201334662	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3679945	201334662	41864711	30	9767											
ADAM23	8745	hgsc.bcm.edu;bcgsc.ca	37	2	207414830	207414830	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAM23	NM_003812	exon9	c.T879C	p.G293G	ACGTGGTATATTT	.	92	4	160	0	.	228	C	207414830	T	C	207414830	2	2	72	1	0	0	0	0	0	0	0	1	245	1625	57	2		2	ADAM23	2	207414830	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	6080168	207414830	35784543	31	9768											
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124210	217124210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH4	NM_020814	exon4	c.G1058A	p.G353D	GGGGTGCCTGCGG	.	101	34	166	0	.	69	T	217124210	C	T	217124210	3	4	72	1	0	0	0	0	1	0	0	0	9303	739	26	3	178	3	MARCH4	2	217124210	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	9709380	217124210	26075163	32	9769											
CHRND	1144	hgsc.bcm.edu;broad.mit.edu	37	2	233400022	233400022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHRND	NM_000751	exon12	c.G1554T	p.X518Y	CATCTAGGGTGGG	.	60	4	62	0	.	155	T	233400022	G	T	233400022	3	4	72	1	0	0	0	0	1	0	0	0	3394	995	35	3	1600	3	CHRND	2	233400022	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	16275812	233400022	9799351	33	9770											
HDLBP	3069	hgsc.bcm.edu;bcgsc.ca	37	2	242194881	242194881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HDLBP	NM_005336	exon8	c.G988A	p.E330K	GGATCTCAACGGA	.	82	4	265	0	.	290	T	242194881	C	T	242194881	3	4	72	1	0	0	0	0	1	0	0	0	7025	835	29	3	2902	3	HDLBP	2	242194881	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	8794859	242194881	1004492	34	9771											
EDEM1	9695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	5252876	5252876	+	Missense_Mutation	SNP	G	G	C	rs148682616	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EDEM1	NM_014674	exon10	c.G1655C	p.S552T	TTCTCAGTGAGAC	.	73	31	151	0	G|0.999;A|0.000	137	C	5252876	G	C	5252876	3	2	72	1	0	0	0	0	1	0	0	0	4911	1029	36	4	1693	4	EDEM1	3	5252876	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10		5252876	192769554	35	9772											
ZNF385D	79750	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	21606170	21606170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF385D	NM_024697	exon3	c.C172T	p.P58S	GAATCGGGTCCAT	.	43	4	82	0	.	156	A	21606170	G	A	21606170	3	1	72	1	0	0	0	0	1	0	0	0	17875	1232	43	3	1039	3	ZNF385D	3	21606170	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	16353294	21606170	176416260	36	9773											
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47155420	47155420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	SETD2,NS,carcinoma,0	SETD2	NM_014159	exon5	c.T4661C	p.V1554A	AGTATGACTTCCA	.	83	5	123	0	.	1273	G	47155420	A	G	47155420	3	3	72	1	0	0	0	0	1	0	0	0	14131	275	10	2	3101	2	SETD2	3	47155420	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	25549250	47155420	150867010	37	9774											
DZIP3	9666	hgsc.bcm.edu;bcgsc.ca	37	3	108367792	108367792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DZIP3	NM_014648	exon17	c.A1990G	p.K664E	AAGAAGAAGACTA	.	95	4	133	0	.	91	G	108367792	A	G	108367792	3	3	72	1	0	0	0	0	1	0	0	0	4865	247	9	2	2052	2	DZIP3	3	108367792	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	61212372	108367792	89654638	38	9775											
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419251	122419251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PARP14	NM_017554	exon6	c.T1850C	p.L617P	AAGGGCTCACTCA	.	58	4	108	0	.	525	C	122419251	T	C	122419251	3	2	72	1	0	0	0	0	1	0	0	0	11458	1551	54	2	1872	2	PARP14	3	122419251	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	14051459	122419251	75603179	39	9776											
CCDC14	64770	hgsc.bcm.edu;bcgsc.ca	37	3	123634213	123634213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC14	NM_022757	exon12	c.G2152A	p.D718N	CTTCATCAGAATC	.	78	4	127	0	.	68	T	123634213	C	T	123634213	3	4	72	1	0	0	0	0	1	0	0	0	2773	826	29	3	590	3	CCDC14	3	123634213	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	1214962	123634213	74388217	40	9777											
KCNAB1	7881	hgsc.bcm.edu;bcgsc.ca	37	3	155838405	155838405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNAB1	NM_172160	exon1	c.T5C	p.L2P	CGATGCTGGCAGC	.	63	4	104	0	.	94	C	155838405	T	C	155838405	3	2	72	1	0	0	0	0	1	0	0	0	8009	1580	55	2	7	2	KCNAB1	3	155838405	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	32204192	155838405	42184025	41	9778											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173997373	173997373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLGN1	NM_014932	exon6	c.T1582G	p.F528V	TGCAATTTCTCCA	.	201	93	323	0	.	231	G	173997373	T	G	173997373	3	3	72	1	0	0	0	0	1	0	0	0	10461	1841	64	5	1596	5	NLGN1	3	173997373	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	18158968	173997373	24025057	42	9779											
KCNMB2	10242	hgsc.bcm.edu;bcgsc.ca	37	3	178560484	178560484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNMB2	NM_005832	exon6	c.T467C	p.M156T	AATCCATGTCCCT	.	79	4	138	0	.	91	C	178560484	T	C	178560484	3	2	72	1	0	0	0	0	1	0	0	0	8075	1464	51	2	481	2	KCNMB2	3	178560484	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	4563111	178560484	19461946	43	9780											
MASP1	5648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186938875	186938875	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MASP1	NM_001879	exon15	c.C1857T	p.A619A	CAGCGGGGCATAA	.	140	62	197	0	.	94	A	186938875	G	A	186938875	2	1	72	1	0	0	0	0	0	0	0	1	9322	1219	43	3		3	MASP1	3	186938875	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	8378391	186938875	11083555	44	9781											
TBC1D14	57533	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	7006574	7006574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBC1D14	NM_001113361	exon8	c.T1274C	p.L425P	CAGAGCTCTTTGA	.	39	4	79	0	.	92	C	7006574	T	C	7006574	3	2	72	1	0	0	0	0	1	0	0	0	15600	1551	54	2	1307	2	TBC1D14	4	7006574	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10		7006574	184147702	45	9782											
KLB	152831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	39447995	39447995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KLB	NM_175737	exon4	c.T1649C	p.L550P	CTCATCTGTACGT	.	43	4	29	0	.	69	C	39447995	T	C	39447995	3	2	72	1	0	0	0	0	1	0	0	0	8332	1580	55	2	1663	2	KLB	4	39447995	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	32441421	39447995	151706281	46	9783											
RHOH	399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	40245536	40245536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RHOH	NM_004310	exon3	c.G530A	p.R177Q	GGAGACGAAACAG	.	105	10	216	0	.	660	A	40245536	G	A	40245536	3	1	72	1	0	0	0	0	1	0	0	0	13340	1058	37	1	532	1	RHOH	4	40245536	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	797541	40245536	150908740	47	9784											
TBCK	93627	hgsc.bcm.edu;bcgsc.ca	37	4	107154200	107154200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBCK	NM_001163436	exon17	c.T1534C	p.C512R	GATGACAGCGAGG	.	76	4	109	0	.	336	G	107154200	A	G	107154200	3	3	72	1	0	0	0	0	1	0	0	0	15633	188	7	2	1187	2	TBCK	4	107154200	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	66908664	107154200	84000076	48	9785											
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148559822	148559822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRMT10	NM_138364	exon12	c.T2399C	p.L800S	GTATCCAACCTAA	.	88	4	186	0	.	91	G	148559822	A	G	148559822	3	3	72	1	0	0	0	0	1	0	0	0	12536	131	5	2	142	2	PRMT10	4	148559822	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	41405622	148559822	42594454	49	9786											
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154625449	154625449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TLR2	NM_003264	exon3	c.G1390A	p.V464I	TTAGATGTTAGCA	.	101	44	144	0	.	523	A	154625449	G	A	154625449	3	1	72	1	0	0	0	0	1	0	0	0	15948	1377	48	3	1392	3	TLR2	4	154625449	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	6065627	154625449	36528827	50	9787											
MAP9	79884	hgsc.bcm.edu;bcgsc.ca	37	4	156294381	156294381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP9	NM_001039580	exon4	c.T388C	p.S130P	ATTCAGAGAAAGA	.	78	4	108	0	.	91	G	156294381	A	G	156294381	3	3	72	1	0	0	0	0	1	0	0	0	9270	304	11	2	1599	2	MAP9	4	156294381	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	1668932	156294381	34859895	51	9788											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38337733	38337733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EGFLAM	NM_001205301	exon2	c.207+2T>C	.	ACACTGTGAGTAC	.	57	26	128	0	.	187	C	38337733	T	C	38337733	5	2	72	1	0	0	0	0	0	0	1	0	4966	1710	59	2	215	2	EGFLAM	5	38337733	Splice_Site	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10		38337733	142577527	52	9789											
GPX8	493869	hgsc.bcm.edu;bcgsc.ca	37	5	54459895	54459895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPX8	NM_001008397	exon3	c.A479G	p.K160R	CAAAGAAGGAACC	.	52	4	87	0	.	68	G	54459895	A	G	54459895	3	3	72	1	0	0	0	0	1	0	0	0	6746	72	3	2	489	2	GPX8	5	54459895	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	16122162	54459895	126455365	53	9790											
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114548112	114548112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PGGT1B	NM_005023	exon9	c.A1121G	p.H374R	GAGATATGTACAT	.	153	52	296	0	.	90	C	114548112	T	C	114548112	3	2	72	1	0	0	0	0	1	0	0	0	11789	1464	51	2	16	2	PGGT1B	5	114548112	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	60088217	114548112	66367148	54	9791											
PCDHGB6	56100	hgsc.bcm.edu;broad.mit.edu	37	5	140790042	140790042	+	Missense_Mutation	SNP	A	A	G	rs185995562	by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_032100	exon1	c.A2273G	p.H758R	TTGCACATACGGG	.	125	5	194	0	A|0.999;T|0.000	.	G	140790042	A	G	140790042	3	3	72	1	0	0	0	0	1	0	0	0	11567	217	8	2	2275	2	PCDHGB6	5	140790042	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	26241930	140790042	40125218	55	9792											
PAK1IP1	55003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10702604	10702604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAK1IP1	NM_017906	exon3	c.A250G	p.T84A	ATAGGTACAATAA	.	76	17	97	0	.	68	G	10702604	A	G	10702604	3	3	72	1	0	0	0	0	1	0	0	0	11400	391	14	2	260	2	PAK1IP1	6	10702604	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		10702604	160412463	56	9793											
CDKAL1	54901	hgsc.bcm.edu;bcgsc.ca	37	6	21065331	21065331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKAL1	NM_017774	exon12	c.A1108G	p.T370A	GGAGAAACAGATC	.	125	5	146	0	.	92	G	21065331	A	G	21065331	3	3	72	1	0	0	0	0	1	0	0	0	3152	43	2	2	1146	2	CDKAL1	6	21065331	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	10362727	21065331	150049736	57	9794											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30680046	30680046	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MDC1	NM_014641	exon5	c.1673delG	p.G558fs	GCTGGTCCCCCAA	.	217	41	246	0	.	273	-	30680046	C	-	30680046	7	5	72	1	0	1	0	1	0	0	0	0	9403	855	30	0	4640	0	MDC1	6	30680046	Frame_Shift_Del	DEL	C	TCGA-DD-A39Z-01A-11D-A20W-10	9614715	30680046	140435021	58	9795											
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30707949	30707949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FLOT1	NM_005803	exon8	c.G709T	p.A237S	GATAGGCCAGGTC	.	91	24	93	0	.	90	A	30707949	C	A	30707949	3	1	72	1	0	0	0	0	1	0	0	0	5936	739	26	3	598	3	FLOT1	6	30707949	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	27903	30707949	140407118	59	9796											
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34831811	34831811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UHRF1BP1	NM_017754	exon15	c.C3248T	p.A1083V	GGGTGGCAGCCCC	.	61	17	99	0	.	93	T	34831811	C	T	34831811	3	4	72	1	0	0	0	0	1	0	0	0	16965	710	25	3	3306	3	UHRF1BP1	6	34831811	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	4123862	34831811	136283256	60	9797											
MRPS10	55173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42185570	42185570	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPS10	NM_018141	exon1	c.G18T	p.A6A	ACCGAACGCTGTC	.	59	16	85	0	.	90	A	42185570	C	A	42185570	2	1	72	1	0	0	0	0	0	0	0	1	9821	523	19	1		1	MRPS10	6	42185570	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	7353759	42185570	128929497	61	9798											
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43970788	43970788	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C6orf223	NM_153246	exon4	c.G654T	p.R218R	GGCACGGCTAATG	.	135	45	145	0	.	68	T	43970788	G	T	43970788	2	4	72	1	0	0	0	0	0	0	0	1	2357	1190	42	3		3	C6orf223	6	43970788	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	1785218	43970788	127144279	62	9799											
PHIP	55023	hgsc.bcm.edu;bcgsc.ca	37	6	79692705	79692705	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHIP	NM_017934	exon23	c.A2667G	p.K889K	CTTCTGTTTTTCA	.	50	4	123	0	.	579	C	79692705	T	C	79692705	2	2	72	1	0	0	0	0	0	0	0	1	11842	1722	60	2		2	PHIP	6	79692705	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	35721917	79692705	91422362	63	9800											
RNGTT	8732	hgsc.bcm.edu;bcgsc.ca	37	6	89322527	89322527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNGTT	NM_003800	exon16	c.T1705C	p.S569P	CTTGAGAAGCTGC	.	72	4	208	0	.	91	G	89322527	A	G	89322527	3	3	72	1	0	0	0	0	1	0	0	0	13503	246	9	2	92	2	RNGTT	6	89322527	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	9629822	89322527	81792540	64	9801											
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99374410	99374410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FBXL4	NM_012160	exon3	c.T455G	p.I152S	ATTCTAATGACTG	.	63	45	187	0	.	227	C	99374410	A	C	99374410	3	2	72	1	0	0	0	0	1	0	0	0	5721	101	4	5	1438	5	FBXL4	6	99374410	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	10051883	99374410	71740657	65	9802											
COQ3	51805	hgsc.bcm.edu;bcgsc.ca	37	6	99823850	99823850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COQ3	NM_017421	exon5	c.A695G	p.E232G	AATGTTTCTAGAT	.	63	4	164	0	.	91	C	99823850	T	C	99823850	3	2	72	1	0	0	0	0	1	0	0	0	3746	1783	62	2	426	2	COQ3	6	99823850	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	449440	99823850	71291217	66	9803											
MAP3K5	4217	ucsc.edu;bcgsc.ca	37	6	136932527	136932527	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP3K5	NM_005923	exon19	c.2416-2A>G	.	TCACCCTAGAGAA	.	39	4	106	1	.	982	C	136932527	T	C	136932527	5	2	72	1	0	0	0	0	0	0	1	0	9253	1536	53	2	1762	2	MAP3K5	6	136932527	Splice_Site	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	37108677	136932527	34182540	67	9804											
TTLL2	83887	ucsc.edu;bcgsc.ca	37	6	167738685	167738685	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTLL2	NM_031949	exon1	c.C24T	p.S8S	GTGTTCCTCCACA	.	36	4	94	1	.	92	T	167738685	C	T	167738685	2	4	72	1	0	0	0	0	0	0	0	1	16724	668	24	3		3	TTLL2	6	167738685	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	30806158	167738685	3376382	68	9805											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4091349	4091349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SDK1	NM_152744	exon19	c.G2798A	p.G933E	ACCATGGACACAT	.	199	75	200	0	.	138	A	4091349	G	A	4091349	3	1	72	1	0	0	0	0	1	0	0	0	13968	1174	41	3	2872	3	SDK1	7	4091349	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10		4091349	155047314	69	9806											
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17933019	17933019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SNX13	NM_015132	exon3	c.C164T	p.S55L	TTCTCTGAGTTTG	.	199	41	229	0	.	650	A	17933019	G	A	17933019	3	1	72	1	0	0	0	0	1	0	0	0	14884	1294	45	3	2805	3	SNX13	7	17933019	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	13841670	17933019	141205644	70	9807											
SP4	6671	hgsc.bcm.edu;bcgsc.ca	37	7	21469063	21469063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SP4	NM_003112	exon3	c.A280G	p.T94A	CTGGTAACAACGC	.	104	5	105	0	.	95	G	21469063	A	G	21469063	3	3	72	1	0	0	0	0	1	0	0	0	14966	43	2	2	290	2	SP4	7	21469063	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3536044	21469063	137669600	71	9808											
ZNF479	90827	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	57188564	57188564	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF479	NM_033273	exon5	c.A558T	p.K186N	GTTACATTTGAAA	.	335	89	339	0	.	72	A	57188564	T	A	57188564	3	1	72	1	0	0	0	0	1	0	0	0	17930	1490	52	4	1020	4	ZNF479	7	57188564	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	35719501	57188564	101950099	72	9809											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10464506	10464506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1L1	NM_178857	exon4	c.G7102A	p.E2368K	AACCTTCACTGGC	.	32	25	96	0	.	139	T	10464506	C	T	10464506	3	4	72	1	0	0	0	0	1	0	0	0	13533	835	29	3	104	3	RP1L1	8	10464506	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10		10464506	135899516	73	9810											
GSR	2936	hgsc.bcm.edu;bcgsc.ca	37	8	30537135	30537135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GSR	NM_000637	exon13	c.T1471C	p.F491L	CAGCAAAACCCTG	.	79	4	319	0	.	94	G	30537135	A	G	30537135	3	3	72	1	0	0	0	0	1	0	0	0	6828	14	1	2	101	2	GSR	8	30537135	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	20072629	30537135	115826887	74	9811											
GPR124	25960	hgsc.bcm.edu;bcgsc.ca	37	8	37699046	37699046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR124	NM_032777	exon19	c.T3190C	p.F1064L	GGCCTCTTCGTCT	.	49	4	138	0	.	157	C	37699046	T	C	37699046	3	2	72	1	0	0	0	0	1	0	0	0	6638	1609	56	2	3243	2	GPR124	8	37699046	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	7161911	37699046	108664976	75	9812											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55542668	55542668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1	NM_006269	exon4	c.T6226A	p.F2076I	AACAGATTCCAGG	.	68	24	89	0	.	102	A	55542668	T	A	55542668	3	1	72	1	0	0	0	0	1	0	0	0	13532	1493	52	4	6236	4	RP1	8	55542668	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	17843622	55542668	90821354	76	9813											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141381200	141381200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRAPPC9	NM_031466	exon8	c.C1508T	p.A503V	AAGAACGCAGACT	.	65	21	93	0	.	228	A	141381200	G	A	141381200	3	1	72	1	0	0	0	0	1	0	0	0	16462	1087	38	1	2296	1	TRAPPC9	8	141381200	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	85838532	141381200	4982822	77	9814											
BAI1	575	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143603336	143603336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BAI1	NM_001702	exon20	c.C3035T	p.T1012M	TGTGCACGCTGGT	.	52	17	90	1	.	1129	T	143603336	C	T	143603336	3	4	72	1	0	0	0	0	1	0	0	0	1298	536	19	1	3113	1	BAI1	8	143603336	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	2222136	143603336	2760686	78	9815											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	144890960	144890960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCRIB	NM_015356	exon15	c.G1934A	p.W645X	TTGTGCCAGCCCC	.	52	11	63	0	.	228	T	144890960	C	T	144890960	4	4	72	1	0	0	0	0	0	1	0	0	13937	595	21	3	3125	3	SCRIB	8	144890960	Nonsense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	1287624	144890960	1473062	79	9816											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144944289	144944289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EPPK1	NM_031308	exon1	c.G3133A	p.A1045T	CTGTGGCCACTTG	.	154	52	170	0	.	25	T	144944289	C	T	144944289	3	4	72	1	0	0	0	0	1	0	0	0	5190	739	26	3	4133	3	EPPK1	8	144944289	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	53329	144944289	1419733	80	9817											
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145619449	145619449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CPSF1	NM_013291	exon33	c.G3811T	p.V1271L	ACATACCCAGAAA	.	167	47	272	0	.	91	A	145619449	C	A	145619449	3	1	72	1	0	0	0	0	1	0	0	0	3824	637	22	3	544	3	CPSF1	8	145619449	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	675160	145619449	744573	81	9818											
ZDHHC21	340481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14639974	14639974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZDHHC21	NM_178566	exon8	c.A541G	p.R181G	CTAGTCTCATTAT	.	61	7	76	0	.	226	C	14639974	T	C	14639974	3	2	72	1	0	0	0	0	1	0	0	0	17609	1564	54	2	260	2	ZDHHC21	9	14639974	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10		14639974	126573457	82	9819											
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35853674	35853674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM8B	NM_001042590	exon13	c.G1256T	p.G419V	TTGCGGGCAGTGT	.	182	65	289	0	.	91	T	35853674	G	T	35853674	3	4	72	1	0	0	0	0	1	0	0	0	16212	1203	42	3	1484	3	TMEM8B	9	35853674	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	21213700	35853674	105359757	83	9820											
NAA35	60560	hgsc.bcm.edu;bcgsc.ca	37	9	88611410	88611410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NAA35	NM_024635	exon12	c.T974C	p.M325T	AAGAAATGGTGAA	.	90	4	166	0	.	92	C	88611410	T	C	88611410	3	2	72	1	0	0	0	0	1	0	0	0	10123	1464	51	2	1016	2	NAA35	9	88611410	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	52757736	88611410	52602021	84	9821											
CTNNAL1	8727	hgsc.bcm.edu;bcgsc.ca	37	9	111734974	111734974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTNNAL1	NM_003798	exon9	c.A1328G	p.Q443R	TCTTTCTGTTCAG	.	75	4	108	0	.	228	C	111734974	T	C	111734974	3	2	72	1	0	0	0	0	1	0	0	0	4015	1580	55	2	920	2	CTNNAL1	9	111734974	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	23123564	111734974	29478457	85	9822											
PSMD5	5711	hgsc.bcm.edu;bcgsc.ca	37	9	123589185	123589185	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSMD5	NM_005047	exon6	c.A672G	p.R224R	GGTGGCTCTAAAA	.	75	4	132	0	.	90	C	123589185	T	C	123589185	2	2	72	1	0	0	0	0	0	0	0	1	12701	1565	54	2		2	PSMD5	9	123589185	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	11854211	123589185	17624246	86	9823											
ABCA2	20	hgsc.bcm.edu;bcgsc.ca	37	9	139913717	139913717	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA2	NM_212533	exon11	c.T1557C	p.Y519Y	CTGGGCATAGTGA	.	84	4	159	0	.	90	G	139913717	A	G	139913717	2	3	72	1	0	0	0	0	0	0	0	1	32	224	8	2		2	ABCA2	9	139913717	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	16324532	139913717	1299714	87	9824											
NEBL	10529	hgsc.bcm.edu;bcgsc.ca	37	10	21134258	21134258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEBL	NM_006393	exon12	c.A1156G	p.R386G	ATGACCTTCCTTT	.	74	6	105	0	.	92	C	21134258	T	C	21134258	3	2	72	1	0	0	0	0	1	0	0	0	10303	1608	56	2	1956	2	NEBL	10	21134258	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10		21134258	114400489	88	9825											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24834953	24834953	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA1217	NM_019590	exon21	c.A5532T	p.T1844T	CCAAACAGGACCA	.	196	73	346	0	.	98	T	24834953	A	T	24834953	2	4	72	1	0	0	0	0	0	0	0	1	8216	175	7	4		4	KIAA1217	10	24834953	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3700695	24834953	110699794	89	9826											
VCL	7414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75871688	75871688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	VCL	NM_014000	exon19	c.G2767A	p.V923M	GCTGAGGTGGGTA	.	103	26	155	1	.	93	A	75871688	G	A	75871688	3	1	72	1	0	0	0	0	1	0	0	0	17136	1261	44	3	2841	3	VCL	10	75871688	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	51036735	75871688	59663059	90	9827											
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88478582	88478582	+	Silent	SNP	C	C	T	rs139213290		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LDB3	NM_001171610	exon12	c.C1971T	p.D657D	GGAAGACGGGGAG	.	157	9	169	0	C|1.000;T|0.000	92	T	88478582	C	T	88478582	2	4	72	1	0	0	0	0	0	0	0	1	8697	535	19	1		1	LDB3	10	88478582	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	12606894	88478582	47056165	91	9828											
SMNDC1	10285	hgsc.bcm.edu;bcgsc.ca	37	10	112063340	112063340	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SMNDC1	NM_005871	exon2	c.A6G	p.S2S	ATCCTCTGACATC	.	69	4	85	0	.	91	C	112063340	T	C	112063340	2	2	72	1	0	0	0	0	0	0	0	1	14799	1567	55	2		2	SMNDC1	10	112063340	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	23584758	112063340	23471407	92	9829											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135012267	135012267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNDC1	NM_152643	exon14	c.G2255A	p.R752H	TGCAGCGTGACTC	.	43	13	37	0	.	229	A	135012267	G	A	135012267	3	1	72	1	0	0	0	0	1	0	0	0	8426	1145	40	1	2309	1	KNDC1	10	135012267	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	22948927	135012267	522480	93	9830											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1256342	1256342	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_002458	exon22	c.C2658T	p.C886C	GGAGTGCAGCCAC	.	100	48	137	0	.	.	T	1256342	C	T	1256342	2	4	72	1	0	0	0	0	0	0	0	1	9979	718	25	3		3	MUC5B	11	1256342	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10		1256342	133750174	94	9831											
RRM1	6240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4142990	4142990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RRM1	NM_001033	exon10	c.A1033T	p.N345Y	GAGACTAATCAGG	.	101	42	209	0	.	227	T	4142990	A	T	4142990	3	4	72	1	0	0	0	0	1	0	0	0	13681	362	13	4	1071	4	RRM1	11	4142990	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	2886648	4142990	130863526	95	9832											
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5528949	5528949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UBQLN3	NM_017481	exon2	c.G1840C	p.A614P	AGTGAGCCTCAGG	.	70	29	126	0	.	93	G	5528949	C	G	5528949	3	3	72	1	0	0	0	0	1	0	0	0	16895	739	26	4	131	4	UBQLN3	11	5528949	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	1385959	5528949	129477567	96	9833											
CYB5R2	51700	hgsc.bcm.edu;bcgsc.ca	37	11	7687733	7687733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CYB5R2	NM_016229	exon8	c.A607G	p.T203A	GGTGAGTCCTGGC	.	81	4	168	0	.	90	C	7687733	T	C	7687733	3	2	72	1	0	0	0	0	1	0	0	0	4127	1667	58	2	231	2	CYB5R2	11	7687733	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	2158784	7687733	127318783	97	9834											
ZNF143	7702	hgsc.bcm.edu;bcgsc.ca	37	11	9546829	9546829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF143	NM_003442	exon15	c.T1729C	p.S577P	ACTGCCTCATCAG	.	83	5	155	0	.	90	C	9546829	T	C	9546829	3	2	72	1	0	0	0	0	1	0	0	0	17729	1551	54	2	1783	2	ZNF143	11	9546829	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	1859096	9546829	125459687	98	9835											
PATL1	219988	hgsc.bcm.edu;bcgsc.ca	37	11	59423450	59423450	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PATL1	NM_152716	exon7	c.A792G	p.A264A	AAGCTGTGCTCTC	.	116	5	189	0	.	1	C	59423450	T	C	59423450	2	2	72	1	0	0	0	0	0	0	0	1	11475	1683	59	2		2	PATL1	11	59423450	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	49876621	59423450	75583066	99	9836											
CAPN1	823	hgsc.bcm.edu;bcgsc.ca	37	11	64977873	64977873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CAPN1	NM_001198869	exon20	c.T2009C	p.V670A	TGGCGGTCGACTT	.	75	4	142	0	.	91	C	64977873	T	C	64977873	3	2	72	1	0	0	0	0	1	0	0	0	2622	1667	58	2	2083	2	CAPN1	11	64977873	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	5554423	64977873	70028643	100	9837											
EHBP1L1	254102	hgsc.bcm.edu;bcgsc.ca	37	11	65350029	65350029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EHBP1L1	NM_001099409	exon9	c.A1886G	p.E629G	AGTGTGAGGGACT	.	76	4	138	0	.	69	G	65350029	A	G	65350029	3	3	72	1	0	0	0	0	1	0	0	0	4976	304	11	2	1920	2	EHBP1L1	11	65350029	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	372156	65350029	69656487	101	9838											
MRPL48	51642	hgsc.bcm.edu;bcgsc.ca	37	11	73536778	73536778	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_016055	exon4	c.G138A	p.R46R	CAGTCGGCCCTAC	.	63	4	93	0	.	.	A	73536778	G	A	73536778	2	1	72	1	0	0	0	0	0	0	0	1	9812	1190	42	3		3	MRPL48	11	73536778	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	8186749	73536778	61469738	102	9839											
TMEM126A	84233	hgsc.bcm.edu;bcgsc.ca	37	11	85367380	85367380	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM126A	NM_032273	exon5	c.A423G	p.K141K	ACACAAAGGGAAC	.	83	4	161	0	.	92	G	85367380	A	G	85367380	2	3	72	1	0	0	0	0	0	0	0	1	16035	69	3	2		2	TMEM126A	11	85367380	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	11830602	85367380	49639136	103	9840											
HYOU1	10525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	118925746	118925746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HYOU1	NM_006389	exon6	c.T446C	p.V149A	CCCAACACTTCCT	.	31	4	71	0	.	90	G	118925746	A	G	118925746	3	3	72	1	0	0	0	0	1	0	0	0	7470	159	6	2	2637	2	HYOU1	11	118925746	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	33558366	118925746	16080770	104	9841											
CMAS	55907	hgsc.bcm.edu;bcgsc.ca	37	12	22215331	22215331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CMAS	NM_018686	exon7	c.A1077G	p.K359K	GAGAAAAGAAATG	.	141	6	255	0	.	93	G	22215331	A	G	22215331	2	3	72	1	0	0	0	0	0	0	0	1	3575	69	3	2		2	CMAS	12	22215331	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		22215331	111636564	105	9842											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41318438	41318438	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTN1	NM_001256063	exon6	c.C480G	p.P160P	TGACCCCCCATAC	.	118	27	240	0	.	1149	G	41318438	C	G	41318438	2	3	72	1	0	0	0	0	0	0	0	1	3640	610	22	4		4	CNTN1	12	41318438	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	19103107	41318438	92533457	106	9843											
ADAMTS20	80070	hgsc.bcm.edu;bcgsc.ca	37	12	43856718	43856718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAMTS20	NM_025003	exon11	c.A1594G	p.T532A	AGTCTGTTCCATC	.	82	4	145	0	.	795	C	43856718	T	C	43856718	3	2	72	1	0	0	0	0	1	0	0	0	266	1725	60	2	4253	2	ADAMTS20	12	43856718	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	2538280	43856718	89995177	107	9844											
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44148626	44148626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS7L	NM_001098614	exon2	c.C423T	p.A141A	ATCACAGGCAAAA	.	75	25	119	0	.	91	A	44148626	G	A	44148626	2	1	72	1	0	0	0	0	0	0	0	1	12834	987	35	3		3	PUS7L	12	44148626	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	291908	44148626	89703269	108	9845											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757190	54757190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR84	NM_020370	exon2	c.T446C	p.V149A	CTGGCCACGCCCA	.	50	24	83	0	.	523	G	54757190	A	G	54757190	3	3	72	1	0	0	0	0	1	0	0	0	6714	159	6	2	748	2	GPR84	12	54757190	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	10608564	54757190	79094705	109	9846											
ACACB	32	hgsc.bcm.edu;bcgsc.ca	37	12	109617834	109617834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACACB	NM_001093	exon10	c.T1760C	p.V587A	TGCAGGTGGAACA	.	76	4	197	0	.	98	C	109617834	T	C	109617834	3	2	72	1	0	0	0	0	1	0	0	0	107	1696	59	2	1798	2	ACACB	12	109617834	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	54860644	109617834	24234061	110	9847											
ATXN2	6311	hgsc.bcm.edu;bcgsc.ca	37	12	111963044	111963044	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATXN2	NM_002973	exon6	c.A1128G	p.A376A	TTCACCTGCATCC	.	54	4	138	0	.	136	C	111963044	T	C	111963044	2	2	72	1	0	0	0	0	0	0	0	1	1211	1567	55	2		2	ATXN2	12	111963044	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	2345210	111963044	21888851	111	9848											
KNTC1	9735	bcgsc.ca;mdanderson.org	37	12	123022962	123022962	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNTC1	NM_014708	exon4	c.T327C	p.H109H	CCTACATCTTATT	.	20	3	85	0	.	543	C	123022962	T	C	123022962	2	2	72	1	0	0	0	0	0	0	0	1	8428	1432	50	2		2	KNTC1	12	123022962	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	11059918	123022962	10828933	112	9849											
SBNO1	55206	hgsc.bcm.edu;bcgsc.ca	37	12	123793921	123793921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SBNO1	NM_001167856	exon27	c.A3566G	p.E1189G	GCTTCCTCCCATG	.	91	5	181	0	.	292	C	123793921	T	C	123793921	3	2	72	1	0	0	0	0	1	0	0	0	13862	1551	54	2	635	2	SBNO1	12	123793921	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	770959	123793921	10057974	113	9850											
DNAH10	196385	hgsc.bcm.edu;bcgsc.ca	37	12	124305128	124305128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAH10	NM_207437	exon23	c.A3648G	p.G1216G	ACTAGGAGTAGAG	.	63	4	155	0	.	95	G	124305128	A	G	124305128	2	3	72	1	0	0	0	0	0	0	0	1	4598	318	11	2		2	DNAH10	12	124305128	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	511207	124305128	9546767	114	9851											
DGKH	160851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42764600	42764600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DGKH	NM_001204504	exon17	c.C1974T	p.S658S	TGACAGCACAGAA	.	58	26	116	1	.	652	T	42764600	C	T	42764600	2	4	72	1	0	0	0	0	0	0	0	1	4470	709	25	3		3	DGKH	13	42764600	Silent	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10		42764600	72405278	115	9852											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21829290	21829311	+	Frame_Shift_Del	DEL	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SUPT16H	NM_007192	exon16	c.1855_1876del	p.619_626del	CTTCTTTAATAAT	.	94	9	190	0	.	90	-	21829311	TAATAATTCGGAAAGCATTCTG	-	21829290	7	5	72	1	0	1	0	1	0	0	0	0	15393	1763	61	0	1311	0	SUPT16H	14	21829290	Frame_Shift_Del	DEL	TAATAATTCGGAAAGCATTCTG	TCGA-DD-A39Z-01A-11D-A20W-10		21829290	85520250	116	9853											
CDKN3	1033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	54878223	54878223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKN3	NM_005192	exon5	c.T215C	p.I72T	GTGGTATACAAGA	.	42	27	84	0	.	838	C	54878223	T	C	54878223	3	2	72	1	0	0	0	0	1	0	0	0	3167	1406	49	2	233	2	CDKN3	14	54878223	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	33048933	54878223	52471317	117	9854											
TRIP11	9321	hgsc.bcm.edu;bcgsc.ca	37	14	92474090	92474090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRIP11	NM_004239	exon10	c.T1421C	p.L474P	AAATTAAGTCTTA	.	95	4	155	0	.	1400	G	92474090	A	G	92474090	3	3	72	1	0	0	0	0	1	0	0	0	16552	72	3	2	4566	2	TRIP11	14	92474090	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	37595867	92474090	14875450	118	9855											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	96798729	96798729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon10	c.G1381T	p.E461X	GGAACTCTCCCCA	.	226	84	367	1	.	93	A	96798729	C	A	96798729	4	1	72	1	0	0	0	0	0	1	0	0	1094	922	32	3	4987	3	ATG2B	14	96798729	Nonsense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	4324639	96798729	10550811	119	9856											
ATG2B	55102	hgsc.bcm.edu;bcgsc.ca	37	14	96809538	96809538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon5	c.T662C	p.L221P	AGCTGAAGTAACT	.	94	4	153	0	.	93	G	96809538	A	G	96809538	3	3	72	1	0	0	0	0	1	0	0	0	1094	72	3	2	5726	2	ATG2B	14	96809538	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	10809	96809538	10540002	120	9857											
CCNK	8812	hgsc.bcm.edu;bcgsc.ca	37	14	99968554	99968554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001099402	exon7	c.A586G	p.T196A	TGCACCACCTTGT	.	82	4	119	0	.	.	G	99968554	A	G	99968554	3	3	72	1	0	0	0	0	1	0	0	0	2930	159	6	2	608	2	CCNK	14	99968554	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3159016	99968554	7380986	121	9858											
RCOR1	23186	hgsc.bcm.edu;bcgsc.ca	37	14	103148307	103148307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RCOR1	NM_015156	exon3	c.A437G	p.E146G	TGTCAGAAGCAAA	.	72	4	109	0	.	91	G	103148307	A	G	103148307	3	3	72	1	0	0	0	0	1	0	0	0	13182	246	9	2	438	2	RCOR1	14	103148307	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3179753	103148307	4201233	122	9859											
AQR	9716	hgsc.bcm.edu;bcgsc.ca	37	15	35166047	35166047	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AQR	NM_014691	exon30	c.T3579C	p.P1193P	AGGATTAGGTTCA	.	83	4	122	0	.	135	G	35166047	A	G	35166047	2	3	72	1	0	0	0	0	0	0	0	1	835	407	15	2		2	AQR	15	35166047	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		35166047	67365345	123	9860											
C15orf41	84529	hgsc.bcm.edu;bcgsc.ca	37	15	36989565	36989565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C15orf41	NM_001130010	exon8	c.T518C	p.L173P	ACTTGCTTCTAGA	.	150	6	210	0	.	46	C	36989565	T	C	36989565	3	2	72	1	0	0	0	0	1	0	0	0	1795	1609	56	2	548	2	C15orf41	15	36989565	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	1823518	36989565	65541827	124	9861											
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41799394	41799394	+	Silent	SNP	G	G	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LTK	NM_002344	exon11	c.C1440G	p.A480A	ATTGGGGGCTGTC	.	77	35	117	0	.	1377	C	41799394	G	C	41799394	2	2	72	1	0	0	0	0	0	0	0	1	9080	1219	43	4		4	LTK	15	41799394	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	4809829	41799394	60731998	125	9862											
CEP152	22995	hgsc.bcm.edu;bcgsc.ca	37	15	49090248	49090248	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CEP152	NM_014985	exon3	c.T88C	p.L30L	GCTGCAACTGAGT	.	55	4	97	0	.	70	G	49090248	A	G	49090248	2	3	72	1	0	0	0	0	0	0	0	1	3248	57	2	2		2	CEP152	15	49090248	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	7290854	49090248	53441144	126	9863											
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49176517	49176517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SHC4	NM_203349	exon4	c.G768T	p.Q256H	TGAAAACTGAAGA	.	67	6	117	0	.	95	A	49176517	C	A	49176517	3	1	72	1	0	0	0	0	1	0	0	0	14273	564	20	3	1160	3	SHC4	15	49176517	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	86269	49176517	53354875	127	9864											
AP4E1	23431	hgsc.bcm.edu;bcgsc.ca	37	15	51289911	51289911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP4E1	NM_007347	exon18	c.A2735G	p.E912G	CTACTGAATACAT	.	44	4	85	0	.	90	G	51289911	A	G	51289911	3	3	72	1	0	0	0	0	1	0	0	0	752	246	9	2	2805	2	AP4E1	15	51289911	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	2113394	51289911	51241481	128	9865											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54825124	54825124	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC13C	NM_001080534	exon24	c.T5556A	p.V1852V	CCAGGTTATAATT	.	55	18	96	0	.	51	A	54825124	T	A	54825124	2	1	72	1	0	0	0	0	0	0	0	1	16983	1741	61	4		4	UNC13C	15	54825124	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	3535213	54825124	47706268	129	9866											
ALDH1A2	8854	hgsc.bcm.edu;bcgsc.ca	37	15	58306387	58306387	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALDH1A2	NM_003888	exon2	c.A210G	p.Q70Q	TGCTTCTTGAACT	.	102	5	191	0	.	226	C	58306387	T	C	58306387	2	2	72	1	0	0	0	0	0	0	0	1	491	1606	56	2		2	ALDH1A2	15	58306387	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	3481263	58306387	44225005	130	9867											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65968921	65968921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DENND4A	NM_001144823	exon24	c.G4228C	p.E1410Q	TAGATTCAGAATC	.	120	5	181	0	.	229	G	65968921	C	G	65968921	3	3	72	1	0	0	0	0	1	0	0	0	4433	835	29	4	1532	4	DENND4A	15	65968921	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	7662534	65968921	36562471	131	9868											
SH2D7	646892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78393469	78393469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001101404	exon5	c.C874T	p.P292S	AACAGGCCTGATG	.	67	43	115	0	.	.	T	78393469	C	T	78393469	3	4	72	1	0	0	0	0	1	0	0	0	14239	739	26	3	892	3	SH2D7	15	78393469	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	12424548	78393469	24137923	132	9869											
POLG	5428	hgsc.bcm.edu;bcgsc.ca	37	15	89864157	89864157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	POLG	NM_002693	exon18	c.A2821G	p.I941V	GGCTGATGCCCAC	.	50	4	136	0	.	228	C	89864157	T	C	89864157	3	2	72	1	0	0	0	0	1	0	0	0	12200	1464	51	2	922	2	POLG	15	89864157	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	11470688	89864157	12667235	133	9870											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	364598	364598	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AXIN1	NM_181050	exon3	c.964delG	p.E322fs	GCTGCTCGCTGTC	.	37	25	113	0	.	684	-	364598	C	-	364598	7	5	72	1	0	1	0	1	0	0	0	0	1236	893	31	0	1660	0	AXIN1	16	364598	Frame_Shift_Del	DEL	C	TCGA-DD-A39Z-01A-11D-A20W-10		364598	89990155	134	9871											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2107122	2107122	+	Missense_Mutation	SNP	T	T	G	rs45517131	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TSC2	NM_001114382	exon9	c.T791G	p.L264R	ACCTCCTTGGCAC	.	92	5	251	0	.	1908	G	2107122	T	G	2107122	3	3	72	1	0	0	0	0	1	0	0	0	16603	1609	56	5	821	5	TSC2	16	2107122	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	1742524	2107122	88247631	135	9872											
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23093795	23093795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	USP31	NM_020718	exon12	c.T1914C	p.P638P	CACATCAGGCAGA	.	69	4	186	0	.	663	G	23093795	A	G	23093795	2	3	72	1	0	0	0	0	0	0	0	1	17059	175	7	2		2	USP31	16	23093795	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	20986673	23093795	67260958	136	9873											
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	50367608	50367609	+	Splice_Site	DNP	CC	CC	AT	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	.	.	.	.	GTCTTTCCTGAAA	.	50	35	131	0	.	.	AT	50367609	CC	AT	50367608	5	1	72	1	0	0	0	0	0	0	1	0	1505	869	30	3	1110	3	BRD7	16	50367608	Splice_Site	DNP	CC	TCGA-DD-A39Z-01A-11D-A20W-10	27273813	50367608	39987145	137	9874											
AP1G1	164	hgsc.bcm.edu;bcgsc.ca	37	16	71779499	71779499	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon19	c.A1758G	p.R586R	AGGCATTCTCTCA	.	79	4	195	0	.	92	C	71779499	T	C	71779499	2	2	72	1	0	0	0	0	0	0	0	1	732	1780	62	2		2	AP1G1	16	71779499	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	21411891	71779499	18575254	138	9875											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	71798318	71798318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon10	c.G862T	p.G288X	CATTTCCTACATT	.	85	65	255	0	.	92	A	71798318	C	A	71798318	4	1	72	1	0	0	0	0	0	1	0	0	732	690	24	3	1675	3	AP1G1	16	71798318	Nonsense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	18819	71798318	18556435	139	9876											
ARRB2	409	hgsc.bcm.edu;bcgsc.ca	37	17	4624255	4624255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARRB2	NM_001257328	exon15	c.A1214G	p.D405G	CAGATGATGACAT	.	96	4	197	0	.	522	G	4624255	A	G	4624255	3	3	72	1	0	0	0	0	1	0	0	0	981	333	12	2	1209	2	ARRB2	17	4624255	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		4624255	76570955	140	9877											
ASGR2	433	hgsc.bcm.edu;bcgsc.ca	37	17	7011175	7011175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASGR2	NM_080912	exon5	c.A404G	p.Q135R	TGCTGCTGTTTCT	.	120	6	195	0	.	91	C	7011175	T	C	7011175	3	2	72	1	0	0	0	0	1	0	0	0	1040	1580	55	2	551	2	ASGR2	17	7011175	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	2386920	7011175	74184035	141	9878											
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495162	33495162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC45B	NM_001267052	exon10	c.C1234G	p.L412V	TTTGACCTGGGCA	.	121	53	241	0	.	157	G	33495162	C	G	33495162	3	3	72	1	0	0	0	0	1	0	0	0	16986	680	24	4	1268	4	UNC45B	17	33495162	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	26483987	33495162	47700048	142	9879											
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45247316	45247316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDC27	NM_001114091	exon4	c.G344A	p.C115Y	GTAAAGCAAGCTG	.	60	4	84	0	.	291	T	45247316	C	T	45247316	3	4	72	1	0	0	0	0	1	0	0	0	3066	710	25	3	2212	3	CDC27	17	45247316	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	11752154	45247316	35947894	143	9880											
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2890914	2890914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EMILIN2	NM_032048	exon4	c.G789T	p.K263N	CATCAAGTCTGAA	.	38	19	52	0	.	93	T	2890914	G	T	2890914	3	4	72	1	0	0	0	0	1	0	0	0	5094	1020	36	3	803	3	EMILIN2	18	2890914	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10		2890914	75186334	144	9881											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	40853607	40853607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SYT4	NM_020783	exon2	c.G787T	p.G263X	CAATTCCCGAGAG	.	131	57	217	0	.	132	A	40853607	C	A	40853607	4	1	72	1	0	0	0	0	0	1	0	0	15473	632	22	3	502	3	SYT4	18	40853607	Nonsense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	37962693	40853607	37223641	145	9882											
AZU1	566	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	828354	828354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AZU1	NM_001700	exon2	c.C183G	p.F61L	CCGCTTCGTGATG	.	53	11	95	0	.	91	G	828354	C	G	828354	3	3	72	1	0	0	0	0	1	0	0	0	1243	883	31	4	189	4	AZU1	19	828354	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10		828354	58300629	146	9883											
ATP8B3	148229	hgsc.bcm.edu;bcgsc.ca	37	19	1785272	1785272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_138813	exon27	c.A3418G	p.T1140A	GGGCGGTCCAGTA	.	63	5	130	0	.	.	C	1785272	T	C	1785272	3	2	72	1	0	0	0	0	1	0	0	0	1196	1667	58	2	496	2	ATP8B3	19	1785272	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	956918	1785272	57343711	147	9884											
REXO1	57455	hgsc.bcm.edu;bcgsc.ca	37	19	1827477	1827477	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	REXO1	NM_020695	exon2	c.A1311G	p.P437P	CGAAGATGGCTTC	.	34	4	60	0	.	90	C	1827477	T	C	1827477	2	2	72	1	0	0	0	0	0	0	0	1	13241	1451	51	2		2	REXO1	19	1827477	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	42205	1827477	57301506	148	9885											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087298	9087298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC16	NM_024690	exon1	c.C4517T	p.T1506I	GCACTGGTATCTG	.	66	28	153	0	.	566	A	9087298	G	A	9087298	3	1	72	1	0	0	0	0	1	0	0	0	9973	1261	44	3	39342	3	MUC16	19	9087298	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	7259821	9087298	50041685	149	9886											
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10449552	10449552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ICAM3	NM_002162	exon2	c.T149C	p.F50S	TTCACAAACAGGG	.	69	6	101	0	.	131	G	10449552	A	G	10449552	3	3	72	1	0	0	0	0	1	0	0	0	7481	14	1	2	1518	2	ICAM3	19	10449552	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	1362254	10449552	48679431	150	9887											
PSG7	5676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43430131	43430131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001206650	exon4	c.C671A	p.S224X	TGTCCTGAATGGT	.	90	43	171	0	.	.	T	43430131	G	T	43430131	4	4	72	1	0	0	0	0	0	1	0	0	12660	1294	45	3	230	3	PSG7	19	43430131	Nonsense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	32980579	43430131	15698852	151	9888											
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu	37	19	48908506	48908506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GRIN2D	NM_000836	exon3	c.G981A	p.V327V	CGTAGTGGCCAGA	.	15	4	35	0	.	156	A	48908506	G	A	48908506	2	1	72	1	0	0	0	0	0	0	0	1	6782	1335	47	3		3	GRIN2D	19	48908506	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	5478375	48908506	10220477	152	9889											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50412103	50412103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP62	NM_153719	exon3	c.G962A	p.G321E	GCCGCCCCTGCAG	.	39	13	95	0	.	615	T	50412103	C	T	50412103	3	4	72	1	0	0	0	0	1	0	0	0	10768	623	22	3	610	3	NUP62	19	50412103	Missense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	1503597	50412103	8716880	153	9890											
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175497	57175497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF835	NM_001005850	exon2	c.C1070A	p.T357N	TCTCCGGTGTGCG	.	74	44	138	0	.	72	T	57175497	G	T	57175497	3	4	72	1	0	0	0	0	1	0	0	0	18183	1261	44	3	545	3	ZNF835	19	57175497	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	6763394	57175497	1953486	154	9891											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57326944	57326944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PEG3	NM_001146184	exon9	c.C2866A	p.P956T	CAAAAGGCAGAGA	.	119	43	283	0	.	164	T	57326944	G	T	57326944	3	4	72	1	0	0	0	0	1	0	0	0	11720	1203	42	3	1904	3	PEG3	19	57326944	Missense_Mutation	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	151447	57326944	1802039	155	9892											
ZNF343	79175	hgsc.bcm.edu;bcgsc.ca	37	20	2465247	2465247	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF343	NM_024325	exon6	c.T360C	p.C120C	CTGCTGACAGGAG	.	81	4	101	0	.	92	G	2465247	A	G	2465247	2	3	72	1	0	0	0	0	0	0	0	1	17855	273	10	2		2	ZNF343	20	2465247	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		2465247	60560273	156	9893											
ASXL1	171023	hgsc.bcm.edu;bcgsc.ca	37	20	31024706	31024706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASXL1	NM_015338	exon12	c.T4191C	p.G1397G	GGTGGGTCACTTG	.	58	5	138	0	.	2057	C	31024706	T	C	31024706	2	2	72	1	0	0	0	0	0	0	0	1	1066	1654	58	2		2	ASXL1	20	31024706	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	28559459	31024706	32000814	157	9894											
E2F1	1869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32265257	32265257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	E2F1	NM_005225	exon5	c.A815T	p.Q272L	TGGAGCTGGGTCT	.	111	47	182	0	.	838	A	32265257	T	A	32265257	3	1	72	1	0	0	0	0	1	0	0	0	4866	1580	55	4	510	4	E2F1	20	32265257	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	1240551	32265257	30760263	158	9895											
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36974925	36974925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LBP	NM_004139	exon1	c.G6A	p.G2G	GATGGGGGCCTTG	.	56	25	80	0	.	91	A	36974925	G	A	36974925	2	1	72	1	0	0	0	0	0	0	0	1	8651	1219	43	3		3	LBP	20	36974925	Silent	SNP	G	TCGA-DD-A39Z-01A-11D-A20W-10	4709668	36974925	26050595	159	9896											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46275954	46275954	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NCOA3	NM_181659	exon18	c.A3390G	p.G1130G	TCAGGGACAATCA	.	90	52	178	0	.	229	G	46275954	A	G	46275954	2	3	72	1	0	0	0	0	0	0	0	1	10230	262	10	2		2	NCOA3	20	46275954	Silent	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	9301029	46275954	16749566	160	9897											
STAU1	6780	hgsc.bcm.edu;bcgsc.ca	37	20	47740949	47740949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STAU1	NM_017453	exon7	c.A785G	p.K262R	CTAGGCTTTACTC	.	65	4	112	0	.	230	C	47740949	T	C	47740949	3	2	72	1	0	0	0	0	1	0	0	0	15271	1609	56	2	980	2	STAU1	20	47740949	Missense_Mutation	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	1464995	47740949	15284571	161	9898											
MORC3	23515	hgsc.bcm.edu;bcgsc.ca	37	21	37747486	37747486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MORC3	NM_015358	exon17	c.T2712C	p.A904A	GCTGGCTATGATT	.	71	4	83	0	.	92	C	37747486	T	C	37747486	2	2	72	1	0	0	0	0	0	0	0	1	9703	1509	53	2		2	MORC3	21	37747486	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10		37747486	10382409	162	9899											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41455834	41455834	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon25	c.4231+1G>C	.	TTATTACCTCTGA	.	87	34	131	0	.	101	G	41455834	C	G	41455834	5	3	72	1	0	0	0	0	0	0	1	0	4768	521	18	4	1846	4	DSCAM	21	41455834	Splice_Site	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	3708348	41455834	6674061	163	9900	55	2									
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	41455835	41455835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon24	c.G4231T	p.G1411X	TATTACCTCTGAT	.	86	35	134	0	.	101	A	41455835	C	A	41455835	4	1	72	1	0	0	0	0	0	1	0	0	4768	695	24	3	1847	3	DSCAM	21	41455835	Nonsense_Mutation	SNP	C	TCGA-DD-A39Z-01A-11D-A20W-10	1	41455835	6674060	164	9901	55	2									
GPM6B	2824	hgsc.bcm.edu;bcgsc.ca	37	X	13803853	13803853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPM6B	NM_001001995	exon3	c.T256C	p.S86P	CCCCGGAGAAGCA	.	119	5	352	0	.	130	G	13803853	A	G	13803853	3	3	72	1	0	0	0	0	1	0	0	0	6616	304	11	2	839	2	GPM6B	23	13803853	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10		13803853	141466707	165	9902											
CXorf38	159013	hgsc.bcm.edu;bcgsc.ca	37	X	40489973	40489973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CXorf38	NM_144970	exon6	c.T854C	p.L285P	TTTCTAAGATCCT	.	67	4	199	0	.	131	G	40489973	A	G	40489973	3	3	72	1	0	0	0	0	1	0	0	0	4107	72	3	2	109	2	CXorf38	23	40489973	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	26686120	40489973	114780587	166	9903											
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44109537	44109537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EFHC2	NM_025184	exon5	c.T761C	p.F254S	CACAAGAAGTAAT	.	60	4	184	0	.	135	G	44109537	A	G	44109537	3	3	72	1	0	0	0	0	1	0	0	0	4947	246	9	2	1532	2	EFHC2	23	44109537	Missense_Mutation	SNP	A	TCGA-DD-A39Z-01A-11D-A20W-10	3619564	44109537	111161023	167	9904											
ZNF81	347344	hgsc.bcm.edu;bcgsc.ca	37	X	47775710	47775710	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF81	NM_007137	exon5	c.T1665C	p.V555V	CTATGTTTGTGCT	.	86	4	211	0	.	130	C	47775710	T	C	47775710	2	2	72	1	0	0	0	0	0	0	0	1	18171	1828	64	2		2	ZNF81	23	47775710	Silent	SNP	T	TCGA-DD-A39Z-01A-11D-A20W-10	3666173	47775710	107494850	168	9905											
NBPF3	84224	hgsc.bcm.edu;mdanderson.org	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NBPF3	NM_032264	exon11	c.T1238G	p.F413C	AGAAAGAGCCTGA	.	121	37	17	0	.	92	G	21806573	A	G	21806573	3	3	73	1	0	0	0	0	1	0	0	0	10197	304	11	2	1276	2	NBPF3	1	21806573	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10		21806573	227444048	1	9906											
BAI2	576	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207725	32207725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BAI2	NM_001703	exon8	c.C1346T	p.A449V	GGGCCCGCCACGC	.	139	60	88	0	.	526	A	32207725	G	A	32207725	3	1	73	1	0	0	0	0	1	0	0	0	1299	1087	38	1	3515	1	BAI2	1	32207725	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	10401152	32207725	217042896	2	9907											
CSMD2	114784	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34011768	34011768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD2	NM_052896	exon56	c.G8537A	p.R2846H	CCCAAACGGATGC	.	114	45	106	0	.	103	T	34011768	C	T	34011768	3	4	73	1	0	0	0	0	1	0	0	0	3945	536	19	1	1982	1	CSMD2	1	34011768	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	1804043	34011768	215238853	3	9908											
HEYL	26508	hgsc.bcm.edu;bcgsc.ca	37	1	40105230	40105230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEYL	NM_014571	exon1	c.A68G	p.E23G	TGGCCCTCTTGGC	.	80	4	87	0	.	91	C	40105230	T	C	40105230	3	2	73	1	0	0	0	0	1	0	0	0	7080	1551	54	2	938	2	HEYL	1	40105230	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	6093462	40105230	209145391	4	9909											
LEPR	3953	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66067119	66067119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LEPR	NM_001003680	exon9	c.A1039C	p.N347H	GGGTCTAATGTTT	.	81	29	66	0	.	91	C	66067119	A	C	66067119	3	2	73	1	0	0	0	0	1	0	0	0	8728	362	13	5	1065	5	LEPR	1	66067119	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	25961889	66067119	183183502	5	9910											
IFI44	10561	hgsc.bcm.edu;bcgsc.ca	37	1	79115893	79115893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFI44	NM_006417	exon2	c.A13G	p.T5A	GTGACAACTCGTT	.	141	6	117	0	.	91	G	79115893	A	G	79115893	3	3	73	1	0	0	0	0	1	0	0	0	7517	43	2	2	15	2	IFI44	1	79115893	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	13048774	79115893	170134728	6	9911											
GBP5	115362	hgsc.bcm.edu;bcgsc.ca	37	1	89729600	89729600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP5	NM_052942	exon9	c.G1181T	p.C394F	CGTTTACAAATGT	.	94	9	68	0	.	91	A	89729600	C	A	89729600	3	1	73	1	0	0	0	0	1	0	0	0	6277	478	17	3	595	3	GBP5	1	89729600	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	10613707	89729600	159521021	7	9912											
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89847413	89847413	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP6	NM_198460	exon7	c.C1032T	p.L344L	GAAGCTCCCCACA	.	221	9	173	0	.	92	T	89847413	C	T	89847413	2	4	73	1	0	0	0	0	0	0	0	1	6278	842	30	3		3	GBP6	1	89847413	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	117813	89847413	159403208	8	9913											
OR10J5	127385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	159505581	159505581	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR10J5	NM_001004469	exon1	c.T217A	p.Y73N	GTGTGTACACCGT	.	206	41	116	0	.	71	T	159505581	A	T	159505581	3	4	73	1	0	0	0	0	1	0	0	0	10912	391	14	4	714	4	OR10J5	1	159505581	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	69658168	159505581	89745040	9	9914											
PTPRC	5788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	198678836	198678836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRC	NM_002838	exon11	c.A1054G	p.K352E	GATAATAAAGAAA	.	189	130	86	0	.	295	G	198678836	A	G	198678836	3	3	73	1	0	0	0	0	1	0	0	0	12797	363	13	2	1097	2	PTPRC	1	198678836	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	39173255	198678836	50571785	10	9915											
DTL	51514	hgsc.bcm.edu;bcgsc.ca	37	1	212238257	212238257	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DTL	NM_016448	exon7	c.527-2A>G	.	TCTTTCAGATGGG	.	82	4	56	0	.	22	G	212238257	A	G	212238257	5	3	73	1	0	0	0	0	0	0	1	0	4787	202	7	2	551	2	DTL	1	212238257	Splice_Site	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	13559421	212238257	37012364	11	9916											
SUSD4	55061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223402546	223402546	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUSD4	NM_017982	exon6	c.C909A	p.I303I	TGATTTGATGCAG	.	234	67	149	0	.	68	T	223402546	G	T	223402546	2	4	73	1	0	0	0	0	0	0	0	1	15407	1280	45	3		3	SUSD4	1	223402546	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	11164289	223402546	25848075	12	9917											
ITPKB	3707	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226923526	226923526	+	Missense_Mutation	SNP	G	G	A	rs149543375		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITPKB	NM_002221	exon2	c.C1634T	p.P545L	AGCTCCGGACTTG	.	132	46	72	0	G|1.000;A|0.000	230	A	226923526	G	A	226923526	3	1	73	1	0	0	0	0	1	0	0	0	7918	1116	39	1	1234	1	ITPKB	1	226923526	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	3520980	226923526	22327095	13	9918											
EDARADD	128178	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236577581	236577581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EDARADD	NM_145861	exon3	c.G142A	p.D48N	ATTCAAGATACGG	.	164	55	75	0	.	90	A	236577581	G	A	236577581	3	1	73	1	0	0	0	0	1	0	0	0	4906	942	33	3	187	3	EDARADD	1	236577581	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	9654055	236577581	12673040	14	9919											
HEATR1	55127	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	236750749	236750749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEATR1	NM_018072	exon14	c.T1668A	p.N556K	CAGAAGATTTGAA	.	266	135	185	0	.	93	T	236750749	A	T	236750749	3	4	73	1	0	0	0	0	1	0	0	0	7027	330	12	4	4894	4	HEATR1	1	236750749	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	173168	236750749	12499872	15	9920											
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54128608	54128608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSME4	NM_014614	exon28	c.C3164G	p.A1055G	ACAATCGCTGGCC	.	106	43	93	0	.	275	C	54128608	G	C	54128608	3	2	73	1	0	0	0	0	1	0	0	0	12709	1087	38	4	2443	4	PSME4	2	54128608	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10		54128608	189070765	16	9921											
C2orf42	54980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70402864	70402864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf42	NM_017880	exon5	c.G980A	p.S327N	AGATTACTGCTCA	.	117	42	120	0	.	90	T	70402864	C	T	70402864	3	4	73	1	0	0	0	0	1	0	0	0	2166	565	20	3	768	3	C2orf42	2	70402864	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	16274256	70402864	172796509	17	9922											
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136594658	136594658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCT	NM_002299	exon1	c.T82C	p.F28L	AAATGAAATTTCT	.	95	42	68	0	.	101	G	136594658	A	G	136594658	3	3	73	1	0	0	0	0	1	0	0	0	8693	14	1	2	5769	2	LCT	2	136594658	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	66191794	136594658	106604715	18	9923											
SCN1A	6323	hgsc.bcm.edu;bcgsc.ca	37	2	166866301	166866301	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN1A	NM_001165963	exon20	c.A3930G	p.G1310G	GATGGCTCCAAGT	.	98	4	61	0	.	147	C	166866301	T	C	166866301	2	2	73	1	0	0	0	0	0	0	0	1	13914	1538	54	2		2	SCN1A	2	166866301	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	30271643	166866301	76333072	19	9924											
DNAH7	56171	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196912185	196912185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon5	c.C289T	p.P97S	GGTGGGGTAATTT	.	193	71	150	1	.	102	A	196912185	G	A	196912185	3	1	73	1	0	0	0	0	1	0	0	0	4606	1261	44	3	12029	3	DNAH7	2	196912185	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	30045884	196912185	46287188	20	9925											
PLCL1	5334	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950766	198950766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCL1	NM_006226	exon2	c.T2525A	p.F842Y	CCCTTTTTGTCCA	.	205	78	164	0	.	228	A	198950766	T	A	198950766	3	1	73	1	0	0	0	0	1	0	0	0	12039	1841	64	4	2531	4	PLCL1	2	198950766	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	2038581	198950766	44248607	21	9926											
C2orf47	79568	hgsc.bcm.edu;bcgsc.ca	37	2	200824539	200824539	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf47	NM_024520	exon4	c.T585C	p.A195A	CCTTGCTGCTAAC	.	95	4	71	0	.	90	C	200824539	T	C	200824539	2	2	73	1	0	0	0	0	0	0	0	1	2169	1567	55	2		2	C2orf47	2	200824539	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	1873773	200824539	42374834	22	9927											
UGT1A5	54579	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234622002	234622002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UGT1A5	NM_019078	exon1	c.T365C	p.L122S	TGTCTTTGATCAT	.	232	89	179	0	.	3	C	234622002	T	C	234622002	3	2	73	1	0	0	0	0	1	0	0	0	16945	1821	63	2	367	2	UGT1A5	2	234622002	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	33797463	234622002	8577371	23	9928											
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47168143	47168143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETD2	NM_014159	exon2	c.A82G	p.N28D	CCTCATTTTCTTC	.	36	4	33	0	.	1273	C	47168143	T	C	47168143	3	2	73	1	0	0	0	0	1	0	0	0	14131	1841	64	2	7692	2	SETD2	3	47168143	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		47168143	150854287	24	9929											
ADAMTS9	56999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	64536638	64536638	+	Missense_Mutation	SNP	C	C	T	rs140575639		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS9	NM_182920	exon31	c.G4799A	p.R1600Q	ACCGGCCGCTTGC	.	225	72	143	0	C|1.000;T|0.000	230	T	64536638	C	T	64536638	3	4	73	1	0	0	0	0	1	0	0	0	273	652	23	1	1044	1	ADAMTS9	3	64536638	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	17368495	64536638	133485792	25	9930											
ITGB5	3693	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	124578237	124578237	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGB5	NM_002213	exon3	c.C213T	p.V71V	ATTTTTGACAAGG	.	226	82	165	0	.	227	A	124578237	G	A	124578237	2	1	73	1	0	0	0	0	0	0	0	1	7898	1277	45	3		3	ITGB5	3	124578237	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	60041599	124578237	73444193	26	9931											
RHO	6010	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129251109	129251109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RHO	NM_000539	exon3	c.C546T	p.G182G	CGAGGGCCTGCAG	.	203	92	172	0	.	90	T	129251109	C	T	129251109	2	4	73	1	0	0	0	0	0	0	0	1	13330	726	26	3		3	RHO	3	129251109	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	4672872	129251109	68771321	27	9932											
PPP2R3A	5523	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135721003	135721003	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP2R3A	NM_002718	exon2	c.T663C	p.D221D	AATAGATAATTTT	.	34	14	34	0	.	662	C	135721003	T	C	135721003	2	2	73	1	0	0	0	0	0	0	0	1	12388	1403	49	2		2	PPP2R3A	3	135721003	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	6469894	135721003	62301427	28	9933											
IGSF10	285313	hgsc.bcm.edu;bcgsc.ca	37	3	151176327	151176327	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF10	NM_178822	exon1	c.C171A	p.P57P	CACATTGGGCGGG	.	244	17	192	0	.	102	T	151176327	G	T	151176327	2	4	73	1	0	0	0	0	0	0	0	1	7597	1335	47	3		3	IGSF10	3	151176327	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	15455324	151176327	46846103	29	9934											
NAALADL2	254827	hgsc.bcm.edu;bcgsc.ca	37	3	175181236	175181236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALADL2	NM_207015	exon7	c.A1282G	p.T428A	TTGAAAACAGTTA	.	61	4	46	0	.	47	G	175181236	A	G	175181236	3	3	73	1	0	0	0	0	1	0	0	0	10130	43	2	2	1308	2	NAALADL2	3	175181236	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	24004909	175181236	22841194	30	9935											
HRG	3273	hgsc.bcm.edu;bcgsc.ca	37	3	186390578	186390578	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HRG	NM_000412	exon5	c.A561G	p.R187R	CTAGAGAGGAGGG	.	95	5	84	0	.	91	G	186390578	A	G	186390578	2	3	73	1	0	0	0	0	0	0	0	1	7354	301	11	2		2	HRG	3	186390578	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	11209342	186390578	11631852	31	9936											
RFC4	5984	hgsc.bcm.edu;ucsc.edu	37	3	186507957	186507957	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RFC4	NM_181573	exon10	c.A970T	p.K324X	TAGACTTCTGTTT	.	162	61	148	0	.	291	A	186507957	T	A	186507957	4	1	73	1	0	0	0	0	0	1	0	0	13247	1792	62	4	129	4	RFC4	3	186507957	Nonsense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	117379	186507957	11514473	32	9937											
SH3TC1	54436	hgsc.bcm.edu;bcgsc.ca	37	4	8230236	8230236	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3TC1	NM_018986	exon12	c.G2815C	p.G939R	CCCCTTGGGGAGT	.	141	6	164	0	.	154	C	8230236	G	C	8230236	3	2	73	1	0	0	0	0	1	0	0	0	14261	1348	47	4	2857	4	SH3TC1	4	8230236	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10		8230236	182924040	33	9938											
PCDH7	5099	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30921790	30921790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH7	NM_032457	exon2	c.A3190G	p.T1064A	AGAGTGACGTTTT	.	188	67	168	1	.	229	G	30921790	A	G	30921790	3	3	73	1	0	0	0	0	1	0	0	0	11516	275	10	2	3281	2	PCDH7	4	30921790	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	22691554	30921790	160232486	34	9939											
N4BP2	55728	hgsc.bcm.edu;bcgsc.ca	37	4	40121838	40121838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	N4BP2	NM_018177	exon9	c.A2107G	p.I703V	GAGCAAATAGAAA	.	50	4	48	0	.	602	G	40121838	A	G	40121838	3	3	73	1	0	0	0	0	1	0	0	0	10110	101	4	2	2133	2	N4BP2	4	40121838	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	9200048	40121838	151032438	35	9940											
CWH43	80157	hgsc.bcm.edu;bcgsc.ca	37	4	49063874	49063874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CWH43	NM_025087	exon16	c.T2067A	p.H689Q	CCATCATTTTCAT	.	157	7	92	0	.	93	A	49063874	T	A	49063874	3	1	73	1	0	0	0	0	1	0	0	0	4073	1490	52	4	2129	4	CWH43	4	49063874	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	8942036	49063874	142090402	36	9941											
PTPN13	5783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	87556466	87556466	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPN13	NM_006264	exon2	c.A57G	p.E19E	GGAGGAAGAAATA	.	87	38	97	0	.	230	G	87556466	A	G	87556466	2	3	73	1	0	0	0	0	0	0	0	1	12782	69	3	2		2	PTPN13	4	87556466	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	38492592	87556466	103597810	37	9942											
ENPEP	2028	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111409837	111409837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENPEP	NM_001977	exon2	c.C785T	p.A262V	CAGTGGCGGTAAG	.	32	18	57	0	.	157	T	111409837	C	T	111409837	3	4	73	1	0	0	0	0	1	0	0	0	5128	782	27	1	791	1	ENPEP	4	111409837	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	23853371	111409837	79744439	38	9943											
INTU	27152	hgsc.bcm.edu;bcgsc.ca	37	4	128635178	128635178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTU	NM_015693	exon15	c.T2647C	p.F883L	GTGTTGTTTGAAT	.	65	4	82	0	.	91	C	128635178	T	C	128635178	3	2	73	1	0	0	0	0	1	0	0	0	7786	1725	60	2	2705	2	INTU	4	128635178	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	17225341	128635178	62519098	39	9944											
MAML3	55534	hgsc.bcm.edu;bcgsc.ca	37	4	140811105	140811105	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAML3	NM_018717	exon2	c.G1485A	p.Q495Q	CTGCTGCTGCTGC	.	71	19	90	0	.	455	T	140811105	C	T	140811105	2	4	73	1	0	0	0	0	0	0	0	1	9207	796	28	3		3	MAML3	4	140811105	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	12175927	140811105	50343171	40	9945											
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148559833	148559833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRMT10	NM_138364	exon12	c.A2388G	p.E796E	AATCTCTTCATCA	.	86	4	115	0	.	91	C	148559833	T	C	148559833	2	2	73	1	0	0	0	0	0	0	0	1	12536	1606	56	2		2	PRMT10	4	148559833	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	7748728	148559833	42594443	41	9946											
NAF1	92345	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164085383	164085383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAF1	NM_138386	exon2	c.G526C	p.E176Q	GTAATTCATCTTT	.	117	11	128	0	.	70	G	164085383	C	G	164085383	3	3	73	1	0	0	0	0	1	0	0	0	10140	835	29	4	1127	4	NAF1	4	164085383	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	15525550	164085383	27068893	42	9947											
PLK2	10769	hgsc.bcm.edu;bcgsc.ca	37	5	57753128	57753128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLK2	NM_006622	exon7	c.G888A	p.R296R	TGTATACCTTGCT	.	57	4	32	0	.	409	T	57753128	C	T	57753128	2	4	73	1	0	0	0	0	0	0	0	1	12096	506	18	3		3	PLK2	5	57753128	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10		57753128	123162132	43	9948											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67575562	67575565	+	Splice_Site	DEL	GTTT	GTTT	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GTTT	GTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3R1	.	.	.	.	CTCCAGGTTTGTT	.	163	34	129	0	.	4332	-	67575565	GTTT	-	67575562	8	5	73	1	0	1	0	1	0	0	1	0	11918	1275	44	0	649	0	PIK3R1	5	67575562	Splice_Site	DEL	GTTT	TCGA-DD-A3A0-01A-11D-A20W-10	9822434	67575562	113339698	44	9949											
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115824677	115824677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA6A	NM_020796	exon8	c.A562G	p.T188A	AGTCAGTCACTGT	.	111	5	89	0	.	92	C	115824677	T	C	115824677	3	2	73	1	0	0	0	0	1	0	0	0	14039	1667	58	2	2578	2	SEMA6A	5	115824677	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	48249115	115824677	65090583	45	9950											
DMXL1	1657	hgsc.bcm.edu;bcgsc.ca	37	5	118569090	118569090	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon38	c.A8331G	p.Q2777Q	TTCTCAACAAATA	.	122	6	115	0	.	92	G	118569090	A	G	118569090	2	3	73	1	0	0	0	0	0	0	0	1	4594	40	2	2		2	DMXL1	5	118569090	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	2744413	118569090	62346170	46	9951											
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138857961	138857961	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM173	NM_198282	exon6	c.653delA	p.N218fs	CGAATGTTGGGGT	.	153	43	170	0	.	69	-	138857961	T	-	138857961	7	5	73	1	0	1	0	1	0	0	0	0	16086	1725	60	0	498	0	TMEM173	5	138857961	Frame_Shift_Del	DEL	T	TCGA-DD-A3A0-01A-11D-A20W-10	20288871	138857961	42057299	47	9952											
SPINK6	404203	hgsc.bcm.edu;bcgsc.ca	37	5	147593498	147593498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK6	NM_205841	exon3	c.C107A	p.P36H	AGGACCCCAAGGT	.	153	7	145	0	.	91	A	147593498	C	A	147593498	3	1	73	1	0	0	0	0	1	0	0	0	15062	623	22	3	117	3	SPINK6	5	147593498	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	8735537	147593498	33321762	48	9953											
SLC6A7	6534	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	149583547	149583547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC6A7	NM_014228	exon10	c.C1278A	p.F426L	GGTGTTCTCAGGG	.	236	71	205	0	.	90	A	149583547	C	A	149583547	3	1	73	1	0	0	0	0	1	0	0	0	14689	912	32	3	1316	3	SLC6A7	5	149583547	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	1990049	149583547	31331713	49	9954											
HMMR	3161	hgsc.bcm.edu;bcgsc.ca	37	5	162891750	162891750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMMR	NM_012485	exon3	c.T167C	p.V56A	TTAATGTTGACAA	.	73	4	65	0	.	90	C	162891750	T	C	162891750	3	2	73	1	0	0	0	0	1	0	0	0	7242	1725	60	2	177	2	HMMR	5	162891750	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	13308203	162891750	18023510	50	9955											
PDLIM7	9260	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176910650	176910650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDLIM7	NM_005451	exon13	c.G1369C	p.V457L	CTCACACATGAGA	.	277	104	206	0	.	153	G	176910650	C	G	176910650	3	3	73	1	0	0	0	0	1	0	0	0	11684	478	17	4	8	4	PDLIM7	5	176910650	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	14018900	176910650	4004610	51	9956											
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178311121	178311121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354B	NM_058230	exon5	c.1668delA	p.G556fs	ATGTGGAAAAACT	.	129	31	110	0	.	92	-	178311121	A	-	178311121	7	5	73	1	0	1	0	1	0	0	0	0	17862	233	9	0	1682	0	ZNF354B	5	178311121	Frame_Shift_Del	DEL	A	TCGA-DD-A3A0-01A-11D-A20W-10	1400471	178311121	2604139	52	9957											
EXOC2	55770	hgsc.bcm.edu;bcgsc.ca	37	6	556010	556010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC2	NM_018303	exon19	c.T1936C	p.F646L	GTTGGAAGACCTG	.	116	5	94	0	.	662	G	556010	A	G	556010	3	3	73	1	0	0	0	0	1	0	0	0	5302	72	3	2	878	2	EXOC2	6	556010	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10		556010	170559057	53	9958											
RNF8	9025	hgsc.bcm.edu;bcgsc.ca	37	6	37344709	37344709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF8	NM_003958	exon6	c.A1136G	p.K379R	AAGAGAAGGAGAA	.	90	5	63	0	.	227	G	37344709	A	G	37344709	3	3	73	1	0	0	0	0	1	0	0	0	13500	72	3	2	1158	2	RNF8	6	37344709	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	36788699	37344709	133770358	54	9959											
ABCC10	89845	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	43413441	43413441	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC10	NM_001198934	exon15	c.C3135A	p.I1045I	CAACATCCTCCTG	.	253	102	258	0	.	96	A	43413441	C	A	43413441	2	1	73	1	0	0	0	0	0	0	0	1	50	845	30	3		3	ABCC10	6	43413441	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	6068732	43413441	127701626	55	9960											
DDX43	55510	hgsc.bcm.edu;bcgsc.ca	37	6	74125911	74125911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX43	NM_018665	exon16	c.A1909G	p.M637V	AGAAAAATGGAAA	.	71	4	57	0	.	229	G	74125911	A	G	74125911	3	3	73	1	0	0	0	0	1	0	0	0	4363	101	4	2	1971	2	DDX43	6	74125911	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	30712470	74125911	96989156	56	9961											
PRDM1	639	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106536122	106536122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon2	c.C89T	p.A30V	GATTGGCAGAGGG	.	172	58	130	0	.	862	T	106536122	C	T	106536122	3	4	73	1	0	0	0	0	1	0	0	0	12450	710	25	3	95	3	PRDM1	6	106536122	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	32410211	106536122	64578945	57	9962											
PRDM1	639	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106553019	106553019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon5	c.C984T	p.P328P	CTCCCCCATTCCA	.	44	18	26	0	.	862	T	106553019	C	T	106553019	2	4	73	1	0	0	0	0	0	0	0	1	12450	581	21	3		3	PRDM1	6	106553019	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	16897	106553019	64562048	58	9963											
MAP3K5	4217	hgsc.bcm.edu;bcgsc.ca	37	6	136935403	136935403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP3K5	NM_005923	exon16	c.A2172G	p.E724E	TATTTCTTCATGC	.	76	4	57	0	.	982	C	136935403	T	C	136935403	2	2	73	1	0	0	0	0	0	0	0	1	9253	1606	56	2		2	MAP3K5	6	136935403	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	30382384	136935403	34179664	59	9964											
ECT2L	345930	hgsc.bcm.edu;bcgsc.ca	37	6	139197610	139197610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ECT2L	NM_001195037	exon13	c.A1580G	p.E527G	TTCAGGAAAGAAA	.	72	4	64	0	.	22	G	139197610	A	G	139197610	3	3	73	1	0	0	0	0	1	0	0	0	4902	260	9	2	1626	2	ECT2L	6	139197610	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	2262207	139197610	31917457	60	9965											
STXBP5	134957	hgsc.bcm.edu;bcgsc.ca	37	6	147631274	147631274	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STXBP5	NM_139244	exon10	c.A972G	p.R324R	AAGAAGACCTTGC	.	70	4	81	0	.	90	G	147631274	A	G	147631274	2	3	73	1	0	0	0	0	0	0	0	1	15355	272	10	2		2	STXBP5	6	147631274	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	8433664	147631274	23483793	61	9966											
LATS1	9113	hgsc.bcm.edu;bcgsc.ca	37	6	149997708	149997708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LATS1	NM_004690	exon6	c.A2759G	p.E920G	AACACTTCAGGTG	.	81	4	63	0	.	992	C	149997708	T	C	149997708	3	2	73	1	0	0	0	0	1	0	0	0	8646	1783	62	2	645	2	LATS1	6	149997708	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	2366434	149997708	21117359	62	9967											
PNLDC1	154197	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	160241522	160241522	+	Silent	SNP	G	G	A	rs144377714	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNLDC1	NM_173516	exon19	c.G1536A	p.A512A	TCTCGCGTTCATC	.	126	37	171	0	G|1.000;A|0.000	90	A	160241522	G	A	160241522	2	1	73	1	0	0	0	0	0	0	0	1	12148	1132	40	1		1	PNLDC1	6	160241522	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	10243814	160241522	10873545	63	9968											
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4798978	4798978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXK1	NM_001037165	exon7	c.T1448C	p.V483A	TGGCCGTGCCTCC	.	30	4	68	0	.	516	C	4798978	T	C	4798978	3	2	73	1	0	0	0	0	1	0	0	0	6014	1696	59	2	1474	2	FOXK1	7	4798978	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		4798978	154339685	64	9969											
MACC1	346389	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20198917	20198917	+	Missense_Mutation	SNP	G	G	A	rs143555326	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACC1	NM_182762	exon5	c.C1067T	p.P356L	GGTGACGGAAGAG	.	164	52	167	0	A|0.001;G|0.999;T|0.000	93	A	20198917	G	A	20198917	3	1	73	1	0	0	0	0	1	0	0	0	9143	1116	39	1	1503	1	MACC1	7	20198917	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	15399939	20198917	138939746	65	9970											
OSBPL3	26031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24911688	24911688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL3	NM_145321	exon3	c.G97A	p.D33N	AGCTGTCCTGTTC	.	114	46	90	0	.	204	T	24911688	C	T	24911688	3	4	73	1	0	0	0	0	1	0	0	0	11279	869	30	3	2650	3	OSBPL3	7	24911688	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	4712771	24911688	134226975	66	9971											
CRHR2	1395	ucsc.edu;bcgsc.ca	37	7	30705231	30705231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRHR2	NM_001202475	exon5	c.C421A	p.R141S	CGATGCGGTAGTG	.	598	92	401	1	.	524	T	30705231	G	T	30705231	3	4	73	1	0	0	0	0	1	0	0	0	3872	1116	39	1	931	1	CRHR2	7	30705231	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	5793543	30705231	128433432	67	9972											
ANLN	54443	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	36445866	36445866	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANLN	NM_018685	exon4	c.T564G	p.L188L	TCTGCTTTCAAAT	.	138	44	117	0	.	517	G	36445866	T	G	36445866	2	3	73	1	0	0	0	0	0	0	0	1	694	1828	64	5		5	ANLN	7	36445866	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	5740635	36445866	122692797	68	9973											
GLI3	2737	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42012094	42012094	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon13	c.C1945A	p.R649R	GCGGCCGAGGATG	.	190	79	129	0	.	1149	T	42012094	G	T	42012094	2	4	73	1	0	0	0	0	0	0	0	1	6439	1057	37	1		1	GLI3	7	42012094	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	5566228	42012094	117126569	69	9974											
CASD1	64921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94166946	94166946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASD1	NM_022900	exon9	c.A1006G	p.N336D	CATCGTAATGCTC	.	230	45	104	0	.	70	G	94166946	A	G	94166946	3	3	73	1	0	0	0	0	1	0	0	0	2664	362	13	2	1040	2	CASD1	7	94166946	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	52154852	94166946	64971717	70	9975											
C7orf66	154907	hgsc.bcm.edu;bcgsc.ca	37	7	108524086	108524086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C7orf66	NM_001024607	exon2	c.T326C	p.F109S	TTTGGAAAAGATT	.	89	4	88	0	.	92	G	108524086	A	G	108524086	3	3	73	1	0	0	0	0	1	0	0	0	2412	14	1	2	25	2	C7orf66	7	108524086	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	14357140	108524086	50614577	71	9976											
LRRN3	54674	hgsc.bcm.edu;bcgsc.ca	37	7	110764583	110764583	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRN3	NM_018334	exon2	c.A1755G	p.P585P	GAATCCATCAACT	.	65	4	73	0	.	154	G	110764583	A	G	110764583	2	3	73	1	0	0	0	0	0	0	0	1	9036	204	8	2		2	LRRN3	7	110764583	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	2240497	110764583	48374080	72	9977											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2820095	2820095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD1	NM_033225	exon61	c.A9521T	p.K3174M	TCGGACTTATAGG	.	71	42	91	0	.	86	A	2820095	T	A	2820095	3	1	73	1	0	0	0	0	1	0	0	0	3944	1609	56	4	1213	4	CSMD1	8	2820095	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		2820095	143543927	73	9978											
ERI1	90459	hgsc.bcm.edu;bcgsc.ca	37	8	8875834	8875834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERI1	NM_153332	exon5	c.C610T	p.P204S	ACCTTCCCTCAGG	.	67	4	114	0	.	68	T	8875834	C	T	8875834	3	4	73	1	0	0	0	0	1	0	0	0	5227	623	22	3	628	3	ERI1	8	8875834	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	6055739	8875834	137488188	74	9979											
ESCO2	157570	hgsc.bcm.edu;bcgsc.ca	37	8	27634369	27634369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESCO2	NM_001017420	exon3	c.T544C	p.C182R	AATAATTGTCATT	.	54	4	50	0	.	90	C	27634369	T	C	27634369	3	2	73	1	0	0	0	0	1	0	0	0	5249	1812	63	2	550	2	ESCO2	8	27634369	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	18758535	27634369	118729653	75	9980											
KIAA0196	9897	hgsc.bcm.edu;bcgsc.ca	37	8	126052109	126052109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA0196	NM_014846	exon24	c.T2882C	p.I961T	TTGGCAATCTGTT	.	82	4	63	0	.	92	G	126052109	A	G	126052109	3	3	73	1	0	0	0	0	1	0	0	0	8161	101	4	2	621	2	KIAA0196	8	126052109	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	98417740	126052109	20311913	76	9981											
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13168371	13168371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MPDZ	NM_003829	exon22	c.A3248G	p.D1083G	TTTATGTCAGGGC	.	84	5	95	0	.	231	C	13168371	T	C	13168371	3	2	73	1	0	0	0	0	1	0	0	0	9722	1667	58	2	2977	2	MPDZ	9	13168371	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		13168371	128045060	77	9982											
IFNA2	3440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	21385289	21385289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFNA2	NM_000605	exon1	c.C40T	p.L14F	AGCTGAGCACCAG	.	118	67	133	0	.	153	A	21385289	G	A	21385289	3	1	73	1	0	0	0	0	1	0	0	0	7537	971	34	3	530	3	IFNA2	9	21385289	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	8216918	21385289	119828142	78	9983											
DNAJA1	3301	hgsc.bcm.edu;bcgsc.ca	37	9	33037024	33037024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJA1	NM_001539	exon8	c.A886G	p.K296E	ATTGTCAAGCATG	.	83	4	51	0	.	226	G	33037024	A	G	33037024	3	3	73	1	0	0	0	0	1	0	0	0	4611	131	5	2	912	2	DNAJA1	9	33037024	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	11651735	33037024	108176407	79	9984											
SPTAN1	6709	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131374459	131374459	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPTAN1	NM_001130438	exon39	c.G4977C	p.L1659L	GAAACTGAAAGAA	.	198	84	123	0	.	158	C	131374459	G	C	131374459	2	2	73	1	0	0	0	0	0	0	0	1	15116	1277	45	4		4	SPTAN1	9	131374459	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	98337435	131374459	9838972	80	9985											
COL5A1	1289	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137726974	137726974	+	Missense_Mutation	SNP	G	G	A	rs150608071		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL5A1	NM_000093	exon65	c.G5294A	p.R1765H	CCCTCCGCTTCCT	.	129	52	122	0	G|1.000;A|0.000	524	A	137726974	G	A	137726974	3	1	73	1	0	0	0	0	1	0	0	0	3696	1087	38	1	5552	1	COL5A1	9	137726974	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	6352515	137726974	3486457	81	9986											
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89717725	89717725	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon7	c.T750A	p.C250X	TGTGTGTGGTGAT	.	74	49	124	0	.	17735	A	89717725	T	A	89717725	4	1	73	1	0	0	0	0	0	1	0	0	12738	1702	59	4	776	4	PTEN	10	89717725	Nonsense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		89717725	45817022	82	9987											
TLL2	7093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98170214	98170214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TLL2	NM_012465	exon9	c.C1066A	p.Q356K	TGTCCTGCAGGGT	.	59	40	102	0	.	93	T	98170214	G	T	98170214	3	4	73	1	0	0	0	0	1	0	0	0	15943	1328	46	3	2033	3	TLL2	10	98170214	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	8452489	98170214	37364533	83	9988											
EIF3A	8661	hgsc.bcm.edu;bcgsc.ca	37	10	120828985	120828985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF3A	NM_003750	exon6	c.A923G	p.K308R	AGATTCTTTCTCA	.	69	4	93	0	.	226	C	120828985	T	C	120828985	3	2	73	1	0	0	0	0	1	0	0	0	5012	1609	56	2	3293	2	EIF3A	10	120828985	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	22658771	120828985	14705762	84	9989											
B4GALNT4	338707	hgsc.bcm.edu;bcgsc.ca	37	11	376081	376081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	B4GALNT4	NM_178537	exon12	c.T1103C	p.L368P	TGTACCTGTCCTT	.	62	4	55	0	.	91	C	376081	T	C	376081	3	2	73	1	0	0	0	0	1	0	0	0	1269	1580	55	2	1149	2	B4GALNT4	11	376081	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		376081	134630435	85	9990											
OR6A2	8590	hgsc.bcm.edu;bcgsc.ca	37	11	6816516	6816516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6A2	NM_003696	exon1	c.A424G	p.S142G	GGCCACTGACAAT	.	81	4	66	0	.	94	C	6816516	T	C	6816516	3	2	73	1	0	0	0	0	1	0	0	0	11186	1580	55	2	563	2	OR6A2	11	6816516	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	6440435	6816516	128190000	86	9991											
NLRP14	338323	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7092523	7092523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP14	NM_176822	exon12	c.G3266T	p.W1089L	TGTCTTGGTGGTG	.	74	22	52	0	.	295	T	7092523	G	T	7092523	3	4	73	1	0	0	0	0	1	0	0	0	10476	1357	47	3	3308	3	NLRP14	11	7092523	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	276007	7092523	127913993	87	9992											
CREB3L1	90993	hgsc.bcm.edu;bcgsc.ca	37	11	46342258	46342259	+	Splice_Site	DNP	CA	CA	AG	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	TCTCTCCAGGATC	.	115	11	116	0	.	.	AG	46342259	CA	AG	46342258	5	1	73	1	0	0	0	0	0	0	1	0	3856	608	21	3	1568	3	CREB3L1	11	46342258	Splice_Site	DNP	CA	TCGA-DD-A3A0-01A-11D-A20W-10	39249735	46342258	88664258	88	9993											
RCOR2	283248	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	63681765	63681765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCOR2	NM_173587	exon7	c.G643A	p.G215R	GCTCTCCCTCACT	.	226	65	121	0	.	92	T	63681765	C	T	63681765	3	4	73	1	0	0	0	0	1	0	0	0	13183	632	22	3	952	3	RCOR2	11	63681765	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	17339507	63681765	71324751	89	9994											
CDC42BPG	55561	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64598997	64598997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC42BPG	NM_017525	exon28	c.C3284T	p.T1095M	CAGAGCGTGTGAG	.	241	29	180	0	.	528	A	64598997	G	A	64598997	3	1	73	1	0	0	0	0	1	0	0	0	3074	1145	40	1	1411	1	CDC42BPG	11	64598997	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	917232	64598997	70407519	90	9995											
RPS6KB2	6199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67200629	67200629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPS6KB2	NM_003952	exon9	c.A740G	p.N247S	GCCACAACCGGGC	.	89	24	60	0	.	1000	G	67200629	A	G	67200629	3	3	73	1	0	0	0	0	1	0	0	0	13657	43	2	2	774	2	RPS6KB2	11	67200629	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	2601632	67200629	67805887	91	9996											
PITPNM1	9600	hgsc.bcm.edu;bcgsc.ca	37	11	67261213	67261213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PITPNM1	NM_004910	exon21	c.T3104C	p.V1035A	ATGGAGACGCTGG	.	195	10	114	0	.	227	G	67261213	A	G	67261213	3	3	73	1	0	0	0	0	1	0	0	0	11950	275	10	2	646	2	PITPNM1	11	67261213	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	60584	67261213	67745303	92	9997											
TMEM135	65084	hgsc.bcm.edu;bcgsc.ca	37	11	87020678	87020678	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM135	NM_022918	exon10	c.T900C	p.L300L	CCAGCTTGGAGCT	.	105	5	55	0	.	514	C	87020678	T	C	87020678	2	2	73	1	0	0	0	0	0	0	0	1	16048	1799	63	2		2	TMEM135	11	87020678	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	19759465	87020678	47985838	93	9998											
TYR	7299	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	89028385	89028385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TYR	NM_000372	exon5	c.G1441C	p.A481P	CTTGGGGCGGCGA	.	384	25	238	0	.	92	C	89028385	G	C	89028385	3	2	73	1	0	0	0	0	1	0	0	0	16810	1203	42	4	1459	4	TYR	11	89028385	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	2007707	89028385	45978131	94	9999											
CNTN5	53942	hgsc.bcm.edu;bcgsc.ca	37	11	99715962	99715962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTN5	NM_001243270	exon5	c.T545C	p.I182T	GGAGTATTCTTAG	.	86	4	51	0	.	366	C	99715962	T	C	99715962	3	2	73	1	0	0	0	0	1	0	0	0	3644	1493	52	2	559	2	CNTN5	11	99715962	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	10687577	99715962	35290554	95	10000											
WNT5B	81029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1741875	1741875	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WNT5B	NM_032642	exon3	c.C132G	p.A44A	CGGTGCCCAGCCC	.	149	61	129	0	.	562	G	1741875	C	G	1741875	2	3	73	1	0	0	0	0	0	0	0	1	17389	610	22	4		4	WNT5B	12	1741875	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10		1741875	132110020	96	10001											
DYRK4	8798	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	4700393	4700393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYRK4	NM_003845	exon3	c.G47C	p.S16T	ACCCTAGCATTAA	.	199	66	170	0	.	360	C	4700393	G	C	4700393	3	2	73	1	0	0	0	0	1	0	0	0	4858	971	34	4	49	4	DYRK4	12	4700393	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	2958518	4700393	129151502	97	10002											
LPAR5	57121	hgsc.bcm.edu;bcgsc.ca	37	12	6729711	6729711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPAR5	NM_001142961	exon2	c.T704C	p.L235P	AGCAGGAGGCGCA	.	30	4	42	0	.	70	G	6729711	A	G	6729711	3	3	73	1	0	0	0	0	1	0	0	0	8908	304	11	2	418	2	LPAR5	12	6729711	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	2029318	6729711	127122184	98	10003											
GYS2	2998	hgsc.bcm.edu;bcgsc.ca	37	12	21692268	21692268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GYS2	NM_021957	exon15	c.A1814G	p.Y605C	TGCTGGTAATACT	.	89	4	101	0	.	523	C	21692268	T	C	21692268	3	2	73	1	0	0	0	0	1	0	0	0	6913	1638	57	2	305	2	GYS2	12	21692268	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	14962557	21692268	112159627	99	10004											
OR6C70	390327	hgsc.bcm.edu;bcgsc.ca	37	12	55863303	55863303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6C70	NM_001005499	exon1	c.T620C	p.V207A	AATGTGACAATAA	.	102	6	66	0	.	69	G	55863303	A	G	55863303	3	3	73	1	0	0	0	0	1	0	0	0	11197	275	10	2	320	2	OR6C70	12	55863303	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	34171035	55863303	77988592	100	10005											
GLI1	2735	hgsc.bcm.edu;bcgsc.ca	37	12	57857530	57857530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI1	NM_005269	exon2	c.T56C	p.L19P	GCTGTCTCCGGCC	.	53	4	48	0	.	722	C	57857530	T	C	57857530	3	2	73	1	0	0	0	0	1	0	0	0	6437	1551	54	2	58	2	GLI1	12	57857530	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	1994227	57857530	75994365	101	10006											
ANKS1B	56899	hgsc.bcm.edu;bcgsc.ca	37	12	99129364	99129364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152788	exon26	c.A3721G	p.T1241A	CCTCAGTGTGTCT	.	67	4	64	0	.	.	C	99129364	T	C	99129364	3	2	73	1	0	0	0	0	1	0	0	0	689	1696	59	2	29	2	ANKS1B	12	99129364	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	41271834	99129364	34722531	102	10007											
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	112479858	112479858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAA25	NM_024953	exon20	c.C2425G	p.L809V	GGTCTAGTAAAGA	.	25	6	17	0	.	155	C	112479858	G	C	112479858	3	2	73	1	0	0	0	0	1	0	0	0	10121	1020	36	4	513	4	NAA25	12	112479858	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	13350494	112479858	21372037	103	10008											
DNAH10	196385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124323027	124323027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon28	c.C4573A	p.P1525T	AAAGACCCCGTGA	.	52	19	72	0	.	95	A	124323027	C	A	124323027	3	1	73	1	0	0	0	0	1	0	0	0	4598	623	22	3	4683	3	DNAH10	12	124323027	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	11843169	124323027	9528868	104	10009											
DNAH10	196385	hgsc.bcm.edu;bcgsc.ca	37	12	124354958	124354958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon43	c.A7211G	p.N2404S	AACGGAATCAATG	.	65	4	78	0	.	95	G	124354958	A	G	124354958	3	3	73	1	0	0	0	0	1	0	0	0	4598	101	4	2	7381	2	DNAH10	12	124354958	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	31931	124354958	9496937	105	10010											
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28494372	28494372	+	Missense_Mutation	SNP	C	C	A	rs192902098		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDX1	NM_000209	exon1	c.C97A	p.P33T	AGCCCCCCTGCGT	.	11	5	31	0	C|0.997;A|0.003	514	A	28494372	C	A	28494372	3	1	73	1	0	0	0	0	1	0	0	0	11695	623	22	3	99	3	PDX1	13	28494372	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10		28494372	86675506	106	10011											
PAN3	255967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28854573	28854573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAN3	NM_175854	exon16	c.G2214C	p.R738S	AAACAGGATGCGA	.	75	49	75	0	.	69	C	28854573	G	C	28854573	3	2	73	1	0	0	0	0	1	0	0	0	11415	1165	41	4	2276	4	PAN3	13	28854573	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	360201	28854573	86315305	107	10012											
NEK3	4752	hgsc.bcm.edu;bcgsc.ca	37	13	52707932	52707932	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK3	NM_002498	exon15	c.A1329G	p.K443K	GGGGCCTTTCAAG	.	60	4	84	0	.	359	C	52707932	T	C	52707932	2	2	73	1	0	0	0	0	0	0	0	1	10325	1606	56	2		2	NEK3	13	52707932	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	23853359	52707932	62461946	108	10013											
PCDH8	5100	hgsc.bcm.edu;bcgsc.ca	37	13	53418699	53418699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH8	NM_002590	exon3	c.T3209C	p.V1070A	GATTACACATTTT	.	96	4	123	0	.	153	G	53418699	A	G	53418699	3	3	73	1	0	0	0	0	1	0	0	0	11517	159	6	2	7	2	PCDH8	13	53418699	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	710767	53418699	61751179	109	10014											
TPP2	7174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103268804	103268804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPP2	NM_003291	exon4	c.G449T	p.C150F	AAGCCTGTAGAAA	.	73	37	58	0	.	92	T	103268804	G	T	103268804	3	4	73	1	0	0	0	0	1	0	0	0	16409	1377	48	3	463	3	TPP2	13	103268804	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	49850105	103268804	11901074	110	10015											
OR11G2	390439	hgsc.bcm.edu;bcgsc.ca	37	14	20666182	20666182	+	Missense_Mutation	SNP	G	G	A	rs77471263		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR11G2	NM_001005503	exon1	c.G688A	p.G230S	AAAAAAGGCCCTG	.	189	22	164	0	.	70	A	20666182	G	A	20666182	3	1	73	1	0	0	0	0	1	0	0	0	10925	1000	35	3	690	3	OR11G2	14	20666182	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10		20666182	86683358	111	10016											
PAX9	5083	hgsc.bcm.edu;bcgsc.ca	37	14	37132384	37132384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAX9	NM_006194	exon3	c.G287A	p.G96D	ACCCCGGCATCTT	.	186	11	112	0	.	228	A	37132384	G	A	37132384	3	1	73	1	0	0	0	0	1	0	0	0	11486	1203	42	3	293	3	PAX9	14	37132384	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	16466202	37132384	70217156	112	10017											
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64494280	64494280	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYNE2	NM_182914	exon43	c.A6483T	p.L2161L	AGAACTAAAGAAG	.	145	6	125	0	.	164	T	64494280	A	T	64494280	2	4	73	1	0	0	0	0	0	0	0	1	15443	349	13	4		4	SYNE2	14	64494280	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	27361896	64494280	42855260	113	10018											
DIO2	1734	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80669460	80669460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIO2	.	.	.	.	GTCAAGTGGCTGA	.	116	44	99	0	.	22	A	80669460	T	A	80669460	3	1	73	1	0	0	0	0	1	0	0	0	4525	1696	59	4	431	4	DIO2	14	80669460	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	16175180	80669460	26680080	114	10019											
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	105418939	105418939	+	Missense_Mutation	SNP	G	G	A	rs137934113	by1000genomes	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHNAK2	NM_138420	exon7	c.C2849T	p.A950V	ACTTCCGCCTTGG	.	301	104	194	0	G|0.998;A|0.002	47	A	105418939	G	A	105418939	3	1	73	1	0	0	0	0	1	0	0	0	415	1087	38	1	14542	1	AHNAK2	14	105418939	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	24749479	105418939	1930601	115	10020											
RPAP1	26015	hgsc.bcm.edu;bcgsc.ca	37	15	41826958	41826958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPAP1	NM_015540	exon6	c.T717C	p.A239A	CTCAGGAGCCATG	.	122	5	98	0	.	153	G	41826958	A	G	41826958	2	3	73	1	0	0	0	0	0	0	0	1	13541	291	11	2		2	RPAP1	15	41826958	Silent	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10		41826958	60704434	116	10021											
IGDCC4	57722	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	65676554	65676554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGDCC4	NM_020962	exon20	c.G3546T	p.R1182S	CAACTCCCTGTCC	.	184	62	143	0	.	93	A	65676554	C	A	65676554	3	1	73	1	0	0	0	0	1	0	0	0	7569	622	22	3	210	3	IGDCC4	15	65676554	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	23849596	65676554	36854838	117	10022											
ADAMTSL3	57188	hgsc.bcm.edu;bcgsc.ca	37	15	84539614	84539614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTSL3	NM_207517	exon9	c.T863C	p.V288A	CCGGCGTCTTTCT	.	32	4	40	0	.	1153	C	84539614	T	C	84539614	3	2	73	1	0	0	0	0	1	0	0	0	276	1667	58	2	893	2	ADAMTSL3	15	84539614	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	18863060	84539614	17991778	118	10023											
VASN	114990	hgsc.bcm.edu;bcgsc.ca	37	16	4432163	4432163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VASN	NM_138440	exon2	c.G1285A	p.A429T	CACCTGGCGTGCT	.	80	4	124	0	.	68	A	4432163	G	A	4432163	3	1	73	1	0	0	0	0	1	0	0	0	17124	1203	42	3	1287	3	VASN	16	4432163	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10		4432163	85922590	119	10024											
CETP	1071	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57005938	57005938	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CETP	NM_000078	exon8	c.C693T	p.D231D	GGTGGACATTTCC	.	123	36	131	0	.	91	T	57005938	C	T	57005938	2	4	73	1	0	0	0	0	0	0	0	1	3277	477	17	3		3	CETP	16	57005938	Silent	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	52573775	57005938	33348815	120	10025											
ZFHX3	463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72829897	72829897	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFHX3	NM_006885	exon9	c.C6684G	p.P2228P	CGAAGGGGGCCGG	.	173	68	143	0	.	72	C	72829897	G	C	72829897	2	2	73	1	0	0	0	0	0	0	0	1	17631	1219	43	4		4	ZFHX3	16	72829897	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	15823959	72829897	17524856	121	10026											
ATP2A3	489	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	3854948	3854948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP2A3	NM_174956	exon4	c.C251G	p.T84S	GTCGTGGTCTCCT	.	173	103	222	0	.	156	C	3854948	G	C	3854948	3	2	73	1	0	0	0	0	1	0	0	0	1138	1261	44	4	3031	4	ATP2A3	17	3854948	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10		3854948	77340262	122	10027											
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577557	7577557	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon7	c.T724A	p.C242S	CCATGCAGGAACT	.	129	76	224	0	.	70225	T	7577557	A	T	7577557	3	4	73	1	0	0	0	0	1	0	0	0	16378	188	7	4	566	4	TP53	17	7577557	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	3722609	7577557	73617653	123	10028											
CHD3	1107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7809999	7809999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD3	NM_001005271	exon29	c.C4664A	p.S1555Y	TCATGTCTCTCGT	.	79	49	105	0	.	228	A	7809999	C	A	7809999	3	1	73	1	0	0	0	0	1	0	0	0	3326	913	32	3	4882	3	CHD3	17	7809999	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	232442	7809999	73385211	124	10029											
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42854589	42854589	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM11	NM_002390	exon21	c.G1737C	p.G579G	GCGTGGGAGCTGT	.	69	19	68	0	.	227	C	42854589	G	C	42854589	2	2	73	1	0	0	0	0	0	0	0	1	235	1161	41	4		4	ADAM11	17	42854589	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	35044590	42854589	38340621	125	10030											
PHB	5245	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	47489105	47489105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHB	NM_002634	exon3	c.A185G	p.Q62R	GGTTTCTGTACCC	.	91	26	84	0	.	90	C	47489105	T	C	47489105	3	2	73	1	0	0	0	0	1	0	0	0	11814	1580	55	2	653	2	PHB	17	47489105	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	4634516	47489105	33706105	126	10031											
KIF19	124602	hgsc.bcm.edu;bcgsc.ca	37	17	72350520	72350520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF19	NM_153209	exon18	c.A2528G	p.E843G	CCAGTGAGGACAA	.	61	4	94	0	.	90	G	72350520	A	G	72350520	3	3	73	1	0	0	0	0	1	0	0	0	8282	304	11	2	2598	2	KIF19	17	72350520	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	24861415	72350520	8844690	127	10032											
DSC3	1825	hgsc.bcm.edu;bcgsc.ca	37	18	28604328	28604328	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSC3	NM_024423	exon6	c.A762G	p.E254E	ACTACTTTCCAAA	.	54	5	40	0	.	94	C	28604328	T	C	28604328	2	2	73	1	0	0	0	0	0	0	0	1	4767	1838	64	2		2	DSC3	18	28604328	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		28604328	49472920	128	10033											
MBD1	4152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	47801526	47801526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD1	NM_001204137	exon10	c.A957G	p.P319P	CTGTGATGGGGGT	.	96	35	85	0	.	228	C	47801526	T	C	47801526	2	2	73	1	0	0	0	0	0	0	0	1	9342	1451	51	2		2	MBD1	18	47801526	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	19197198	47801526	30275722	129	10034											
INSR	3643	hgsc.bcm.edu;bcgsc.ca	37	19	7152932	7152932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INSR	NM_000208	exon10	c.A2036G	p.K679R	GGCAGCTTCAGCC	.	69	4	58	0	.	1381	C	7152932	T	C	7152932	3	2	73	1	0	0	0	0	1	0	0	0	7773	1609	56	2	2164	2	INSR	19	7152932	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		7152932	51976051	130	10035											
MUC16	94025	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9089471	9089471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon1	c.C2344G	p.P782A	TTTCAGGACTTGT	.	159	66	111	0	.	566	C	9089471	G	C	9089471	3	2	73	1	0	0	0	0	1	0	0	0	9973	1174	41	4	41515	4	MUC16	19	9089471	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	1936539	9089471	50039512	131	10036											
CACNA1A	773	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	13394203	13394203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA1A	NM_001127221	exon22	c.C3703T	p.R1235C	ACAGGCGGCGAAG	.	237	75	179	0	.	67	A	13394203	G	A	13394203	3	1	73	1	0	0	0	0	1	0	0	0	2538	1116	39	1	4026	1	CACNA1A	19	13394203	Missense_Mutation	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	4304732	13394203	45734780	132	10037											
ZNF675	171392	hgsc.bcm.edu;bcgsc.ca	37	19	23837367	23837367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF675	NM_138330	exon4	c.A368G	p.K123R	TGCAACTTACATT	.	123	5	102	0	.	228	C	23837367	T	C	23837367	3	2	73	1	0	0	0	0	1	0	0	0	18079	1609	56	2	1342	2	ZNF675	19	23837367	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	10443164	23837367	35291616	133	10038											
PVRL2	5819	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	45375206	45375206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PVRL2	NM_002856	exon3	c.C575T	p.A192V	CACCTGCCCGGAT	.	114	16	102	0	.	90	T	45375206	C	T	45375206	3	4	73	1	0	0	0	0	1	0	0	0	12840	739	26	3	585	3	PVRL2	19	45375206	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	21537839	45375206	13753777	134	10039											
LIG1	3978	hgsc.bcm.edu;bcgsc.ca	37	19	48665558	48665558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIG1	NM_000234	exon3	c.A68G	p.E23G	GATGCCTCCTTCT	.	101	5	90	0	.	722	C	48665558	T	C	48665558	3	2	73	1	0	0	0	0	1	0	0	0	8781	1551	54	2	2795	2	LIG1	19	48665558	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	3290352	48665558	10463425	135	10040											
NR1H2	7376	hgsc.bcm.edu;bcgsc.ca	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	165	36	83	0	G|0.903;A|0.097	186	A	50881825	G	A	50881825	2	1	73	1	0	0	0	0	0	0	0	1	10617	962	34	3		3	NR1H2	19	50881825	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	2216267	50881825	8247158	136	10041											
KIR2DL3	3804	hgsc.bcm.edu;bcgsc.ca	37	19	55263169	55263169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIR2DL3	NM_015868	exon6	c.T784C	p.F262L	CTCCTCTTCTTTC	.	116	5	48	0	.	92	C	55263169	T	C	55263169	3	2	73	1	0	0	0	0	1	0	0	0	8317	1609	56	2	806	2	KIR2DL3	19	55263169	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	4381344	55263169	3865814	137	10042											
NLRP2	55655	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	55508725	55508725	+	Missense_Mutation	SNP	C	C	A	rs61735074	byfrequency;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP2	NM_017852	exon12	c.C2920A	p.L974I	GAAGACCTCTGCT	.	321	157	232	0	C|0.982;G|0.018	120	A	55508725	C	A	55508725	3	1	73	1	0	0	0	0	1	0	0	0	10477	681	24	3	2962	3	NLRP2	19	55508725	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	245556	55508725	3620258	138	10043											
CDH22	64405	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	44839091	44839091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH22	NM_021248	exon7	c.G1141A	p.V381M	CGCGCACGATCGC	.	128	58	89	0	.	95	T	44839091	C	T	44839091	3	4	73	1	0	0	0	0	1	0	0	0	3107	536	19	1	1369	1	CDH22	20	44839091	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10		44839091	18186429	139	10044											
PRPF6	24148	hgsc.bcm.edu;bcgsc.ca	37	20	62614445	62614445	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRPF6	NM_012469	exon2	c.T117C	p.D39D	CCGTGATGCAAAT	.	117	5	89	0	.	70	C	62614445	T	C	62614445	2	2	73	1	0	0	0	0	0	0	0	1	12574	1461	51	2		2	PRPF6	20	62614445	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	17775354	62614445	411075	140	10045											
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47685325	47685325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCM3AP	NM_003906	exon12	c.A3144G	p.A1048A	GGTCAGTGCCAGG	.	66	4	78	0	.	291	C	47685325	T	C	47685325	2	2	73	1	0	0	0	0	0	0	0	1	9388	1683	59	2		2	MCM3AP	21	47685325	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		47685325	444570	141	10046											
ARVCF	421	hgsc.bcm.edu;bcgsc.ca	37	22	19959474	19959474	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARVCF	NM_001670	exon18	c.C2716A	p.R906R	CCCTCCGGTCCAC	.	88	6	47	0	.	91	T	19959474	G	T	19959474	2	4	73	1	0	0	0	0	0	0	0	1	1003	1115	39	1		1	ARVCF	22	19959474	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10		19959474	31345092	142	10047											
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21328152	21328152	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIFM3	NM_001146288	exon4	c.G369T	p.V123V	CCTGGTGAAAGGT	.	112	34	63	0	.	280	T	21328152	G	T	21328152	2	4	73	1	0	0	0	0	0	0	0	1	428	1277	45	3		3	AIFM3	22	21328152	Silent	SNP	G	TCGA-DD-A3A0-01A-11D-A20W-10	1368678	21328152	29976414	143	10048											
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	22842944	22842944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280B	NM_080764	exon4	c.A780T	p.A260A	TGTTTTTGCCAAT	.	100	17	81	0	.	70	A	22842944	T	A	22842944	2	1	73	1	0	0	0	0	0	0	0	1	17812	1799	63	4		4	ZNF280B	22	22842944	Silent	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	1514792	22842944	28461622	144	10049											
MTMR3	8897	hgsc.bcm.edu;bcgsc.ca	37	22	30387534	30387534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTMR3	NM_153050	exon7	c.A335G	p.K112R	GGCTGAAGAGACT	.	80	5	68	0	.	292	G	30387534	A	G	30387534	3	3	73	1	0	0	0	0	1	0	0	0	9945	72	3	2	353	2	MTMR3	22	30387534	Missense_Mutation	SNP	A	TCGA-DD-A3A0-01A-11D-A20W-10	7544590	30387534	20917032	145	10050											
C22orf28	51493	hgsc.bcm.edu;bcgsc.ca	37	22	32789991	32789991	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C22orf28	NM_014306	exon11	c.1180-2A>G	.	GTGAGCTGAGGAT	.	75	4	56	0	.	90	C	32789991	T	C	32789991	5	2	73	1	0	0	0	0	0	0	1	0	2140	1594	55	2	351	2	C22orf28	22	32789991	Splice_Site	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10	2402457	32789991	18514575	146	10051											
RANGAP1	5905	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41645369	41645369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RANGAP1	NM_002883	exon15	c.G1659T	p.K553N	AAGGGCCTTGGGG	.	101	17	91	0	.	90	A	41645369	C	A	41645369	3	1	73	1	0	0	0	0	1	0	0	0	13033	680	24	3	112	3	RANGAP1	22	41645369	Missense_Mutation	SNP	C	TCGA-DD-A3A0-01A-11D-A20W-10	8855378	41645369	9659197	147	10052											
BRD1	23774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50187702	50187703	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.G780L	TCCGGCCCCAGCG	.	58	43	67	0	.	.	AA	50187703	CC	AA	50187702	3	1	73	1	0	0	0	0	1	0	0	0	1501	623	22	3	865	3	BRD1	22	50187702	Missense_Mutation	DNP	CC	TCGA-DD-A3A0-01A-11D-A20W-10	8542333	50187702	1116864	148	10053											
XK	7504	hgsc.bcm.edu;bcgsc.ca	37	X	37553772	37553772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XK	NM_021083	exon2	c.T479C	p.V160A	TAAGTGTCATGCA	.	116	5	100	0	.	130	C	37553772	T	C	37553772	3	2	73	1	0	0	0	0	1	0	0	0	17428	1667	58	2	485	2	XK	23	37553772	Missense_Mutation	SNP	T	TCGA-DD-A3A0-01A-11D-A20W-10		37553772	117716788	149	10054											
PAQR7	164091	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	26189417	26189417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PAQR7	NM_178422	exon2	c.A914C	p.E305A	AGAGGCTCATAGA	.	248	149	306	0	.	71	G	26189417	T	G	26189417	3	3	74	1	0	0	0	0	1	0	0	0	11440	1551	54	5	130	5	PAQR7	1	26189417	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10		26189417	223061204	1	10055											
MTF1	4520	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	38281195	38281195	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTF1	NM_005955	exon11	c.C1875T	p.I625I	TTTGATGATGATC	.	239	110	173	0	.	92	A	38281195	G	A	38281195	2	1	74	1	0	0	0	0	0	0	0	1	9922	1280	45	3		3	MTF1	1	38281195	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	12091778	38281195	210969426	2	10056											
LRP8	7804	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	53716471	53716471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP8	NM_004631	exon17	c.C2567A	p.T856N	CTTTTGGTGTTCT	.	209	111	204	0	.	90	T	53716471	G	T	53716471	3	4	74	1	0	0	0	0	1	0	0	0	8963	1261	44	3	336	3	LRP8	1	53716471	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	15435276	53716471	195534150	3	10057											
INADL	10207	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62321778	62321778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	INADL	NM_176877	exon18	c.G2189T	p.G730V	GTGGGGGACTATT	.	341	66	226	1	.	94	T	62321778	G	T	62321778	3	4	74	1	0	0	0	0	1	0	0	0	7731	1174	41	3	2255	3	INADL	1	62321778	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	8605307	62321778	186928843	4	10058											
NEGR1	257194	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	72400944	72400944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NEGR1	NM_173808	exon2	c.G227A	p.S76N	ATAATACTTGACC	.	103	25	72	0	.	92	T	72400944	C	T	72400944	3	4	74	1	0	0	0	0	1	0	0	0	10317	565	20	3	861	3	NEGR1	1	72400944	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	10079166	72400944	176849677	5	10059											
KCNA3	3738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	111216834	111216834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCNA3	NM_002232	exon1	c.598delG	p.D200fs	CCTCGTCCTCGCG	.	110	55	69	0	.	95	-	111216834	C	-	111216834	7	5	74	1	0	1	0	1	0	0	0	0	8004	855	30	0	1133	0	KCNA3	1	111216834	Frame_Shift_Del	DEL	C	TCGA-DD-A3A1-01A-11D-A20W-10	38815890	111216834	138033787	6	10060											
ITGA10	8515	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	145534216	145534216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITGA10	NM_003637	exon14	c.A1721G	p.E574G	CTCTGGAAGATGG	.	191	50	154	0	.	231	G	145534216	A	G	145534216	3	3	74	1	0	0	0	0	1	0	0	0	7873	246	9	2	1775	2	ITGA10	1	145534216	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	34317382	145534216	103716405	7	10061											
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152277969	152277969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FLG	NM_002016	exon3	c.T9393G	p.D3131E	AGAGCTATCTACC	.	448	112	344	0	.	106	C	152277969	A	C	152277969	3	2	74	1	0	0	0	0	1	0	0	0	5922	446	16	5	2796	5	FLG	1	152277969	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	6743753	152277969	96972652	8	10062											
IQGAP3	128239	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	156496391	156496391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IQGAP3	NM_178229	exon38	c.G4783T	p.D1595Y	GGAGATCCTAGGA	.	78	20	71	0	.	96	A	156496391	C	A	156496391	3	1	74	1	0	0	0	0	1	0	0	0	7816	869	30	3	116	3	IQGAP3	1	156496391	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	4218422	156496391	92754230	9	10063											
PYHIN1	149628	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158908887	158908887	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PYHIN1	NM_152501	exon4	c.T429A	p.S143S	ACCATCTGAAGAA	.	149	50	130	0	.	94	A	158908887	T	A	158908887	2	1	74	1	0	0	0	0	0	0	0	1	12865	1567	55	4		4	PYHIN1	1	158908887	Silent	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	2412496	158908887	90341734	10	10064											
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183095398	183095398	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LAMC1	NM_002293	exon16	c.2944+1G>T	.	GCAAACGTAAGGG	.	284	131	140	0	.	252	T	183095398	G	T	183095398	5	4	74	1	0	0	0	0	0	0	1	0	8614	1159	40	1	3007	1	LAMC1	1	183095398	Splice_Site	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	24186511	183095398	66155223	11	10065											
RGS7	6000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	240978079	240978079	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RGS7	NM_002924	exon13	c.784-2A>G	.	TTTATCTGAAAAG	.	85	24	47	0	.	232	C	240978079	T	C	240978079	5	2	74	1	0	0	0	0	0	0	1	0	13310	1594	55	2	709	2	RGS7	1	240978079	Splice_Site	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	57882681	240978079	8272542	12	10066											
OR2M5	127059	ucsc.edu;bcgsc.ca	37	1	248308863	248308863	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR2M5	NM_001004690	exon1	c.C414A	p.P138P	GAGACCCAAAATT	.	512	237	393	2	.	71	A	248308863	C	A	248308863	2	1	74	1	0	0	0	0	0	0	0	1	11013	581	21	3		3	OR2M5	1	248308863	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	7330784	248308863	941758	13	10067											
SLC8A1	6546	ucsc.edu;bcgsc.ca	37	2	40366656	40366656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC8A1	NM_021097	exon9	c.G2430T	p.M810I	GCCAATCATGAGG	.	178	60	174	0	.	93	A	40366656	C	A	40366656	3	1	74	1	0	0	0	0	1	0	0	0	14706	826	29	3	499	3	SLC8A1	2	40366656	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		40366656	202832717	14	10068											
SPTBN1	6711	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	54850714	54850714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SPTBN1	NM_003128	exon10	c.T1163G	p.L388R	GGAAGCTCATCTC	.	128	57	138	0	.	140	G	54850714	T	G	54850714	3	3	74	1	0	0	0	0	1	0	0	0	15118	1551	54	5	1310	5	SPTBN1	2	54850714	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	14484058	54850714	188348659	15	10069											
GPR17	2840	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128408959	128408959	+	Missense_Mutation	SNP	G	G	A	rs151092449		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR17	NM_005291	exon3	c.G734A	p.R245H	TCATCCGCAGCCT	.	183	60	137	0	G|1.000;A|0.000	514	A	128408959	G	A	128408959	3	1	74	1	0	0	0	0	1	0	0	0	6667	1087	38	1	740	1	GPR17	2	128408959	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	73558245	128408959	114790414	16	10070											
XIRP2	129446	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104144	168104144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XIRP2	NM_152381	exon9	c.G6242A	p.R2081K	TGAGCAGACAATT	.	158	71	155	0	.	104	A	168104144	G	A	168104144	3	1	74	1	0	0	0	0	1	0	0	0	17427	942	33	3	6272	3	XIRP2	2	168104144	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	39695185	168104144	75095229	17	10071											
DCP1A	55802	hgsc.bcm.edu;ucsc.edu	37	3	53326495	53326495	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCP1A	NM_018403	exon7	c.A987T	p.A329A	AACCTGTGCAGTA	.	431	163	465	0	.	90	A	53326495	T	A	53326495	2	1	74	1	0	0	0	0	0	0	0	1	4298	1683	59	4		4	DCP1A	3	53326495	Silent	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10		53326495	144695935	18	10072											
ABI3BP	25890	hgsc.bcm.edu;bcgsc.ca	37	3	100569517	100569517	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABI3BP	NM_015429	exon14	c.A1287G	p.P429P	TGCCCTTGGCTGT	.	77	5	90	0	.	138	C	100569517	T	C	100569517	2	2	74	1	0	0	0	0	0	0	0	1	91	1799	63	2		2	ABI3BP	3	100569517	Silent	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	47243022	100569517	97452913	19	10073											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	127	47	123	0	.	27752	G	178952085	A	G	178952085	3	3	74	1	0	0	0	0	1	0	0	0	11913	217	8	2	3218	2	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	78382568	178952085	19070345	20	10074											
GPR125	166647	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	22425934	22425934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR125	NM_145290	exon11	c.G1485A	p.L495L	ATCAGCCAACATG	.	220	88	247	0	.	91	T	22425934	C	T	22425934	2	4	74	1	0	0	0	0	0	0	0	1	6639	593	21	3		3	GPR125	4	22425934	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		22425934	168728342	21	10075											
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	89652508	89652508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM13A	NM_014883	exon23	c.T2915G	p.F972C	TCTTCAAAATCCC	.	25	8	39	0	.	70	C	89652508	A	C	89652508	3	2	74	1	0	0	0	0	1	0	0	0	5452	14	1	5	164	5	FAM13A	4	89652508	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	67226574	89652508	101501768	22	10076											
NDST4	64579	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	115858629	115858629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NDST4	NM_022569	exon5	c.G1252T	p.A418S	CCACAGCATAGCC	.	270	97	255	0	.	94	A	115858629	C	A	115858629	3	1	74	1	0	0	0	0	1	0	0	0	10258	710	25	3	1406	3	NDST4	4	115858629	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	26206121	115858629	75295647	23	10077											
LARP1B	55132	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	129028308	129028308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LARP1B	NM_032239	exon9	c.C828A	p.S276R	GGATAGCACAGAA	.	111	46	124	0	.	68	A	129028308	C	A	129028308	3	1	74	1	0	0	0	0	1	0	0	0	8629	709	25	3	854	3	LARP1B	4	129028308	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	13169679	129028308	62125968	24	10078											
TLL1	7092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	167020635	167020635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TLL1	NM_012464	exon20	c.C2863G	p.L955V	GATGGTCTTGATT	.	290	100	269	0	.	158	G	167020635	C	G	167020635	3	3	74	1	0	0	0	0	1	0	0	0	15942	913	32	4	2941	4	TLL1	4	167020635	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	37992327	167020635	24133641	25	10079											
MED10	84246	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	6374436	6374436	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED10	NM_032286	exon4	c.309+1G>A	.	GTCTTACCTTCAT	.	266	59	185	0	.	91	T	6374436	C	T	6374436	5	4	74	1	0	0	0	0	0	0	1	0	9426	521	18	3	105	3	MED10	5	6374436	Splice_Site	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		6374436	174540824	26	10080											
IL7R	3575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35867499	35867499	+	Missense_Mutation	SNP	A	A	G	rs199742437	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL7R	NM_002185	exon3	c.A313G	p.S105G	GGAAAGAGCAATA	.	100	25	70	0	.	157	G	35867499	A	G	35867499	3	3	74	1	0	0	0	0	1	0	0	0	7705	304	11	2	323	2	IL7R	5	35867499	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	29493063	35867499	145047761	27	10081											
DDX46	9879	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	134121198	134121198	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DDX46	NM_014829	exon11	c.T1386A	p.T462T	GATTACTAAAGAG	.	170	35	157	0	.	227	A	134121198	T	A	134121198	2	1	74	1	0	0	0	0	0	0	0	1	4364	1509	53	4		4	DDX46	5	134121198	Silent	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	98253699	134121198	46794062	28	10082											
PCDHA11	56138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249054	140249054	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PCDHA11	NM_018902	exon1	c.G366A	p.E122E	CGTGGAGGTGAAG	.	150	78	158	0	.	67	A	140249054	G	A	140249054	2	1	74	1	0	0	0	0	0	0	0	1	11521	991	35	3		3	PCDHA11	5	140249054	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	6127856	140249054	40666206	29	10083											
FAM8A1	51439	hgsc.bcm.edu;mdanderson.org	37	6	17601073	17601073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM8A1	NM_016255	exon1	c.C433T	p.Q145X	AGCCCCCAGCCCT	.	70	28	44	0	.	90	T	17601073	C	T	17601073	4	4	74	1	0	0	0	0	0	1	0	0	5649	595	21	3	435	3	FAM8A1	6	17601073	Nonsense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		17601073	153513994	30	10084											
COL11A2	1302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33141808	33141808	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COL11A2	NM_080680	exon33	c.C2509A	p.R837R	CTCCCCGAGGCCC	.	187	66	158	0	.	95	T	33141808	G	T	33141808	2	4	74	1	0	0	0	0	0	0	0	1	3668	1057	37	1		1	COL11A2	6	33141808	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	15540735	33141808	137973259	31	10085											
NCOA7	135112	broad.mit.edu;bcgsc.ca	37	6	126203615	126203615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NCOA7	NM_001199619	exon8	c.T617C	p.V206A	AAAGAGTCTTATC	.	50	4	57	0	.	227	C	126203615	T	C	126203615	3	2	74	1	0	0	0	0	1	0	0	0	10234	1667	58	2	639	2	NCOA7	6	126203615	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	93061807	126203615	44911452	32	10086											
RAB32	10981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146875606	146875606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAB32	NM_006834	exon3	c.A543G	p.I181M	AAACATAGAGGAA	.	63	38	86	0	.	651	G	146875606	A	G	146875606	3	3	74	1	0	0	0	0	1	0	0	0	12921	410	15	2	553	2	RAB32	6	146875606	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	20671991	146875606	24239461	33	10087											
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151144808	151144808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLEKHG1	NM_001029884	exon15	c.A1466G	p.Q489R	ACATCCAAAAGGT	.	31	15	54	0	.	92	G	151144808	A	G	151144808	3	3	74	1	0	0	0	0	1	0	0	0	12068	130	5	2	1516	2	PLEKHG1	6	151144808	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	4269202	151144808	19970259	34	10088											
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11446083	11446083	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THSD7A	NM_015204	exon21	c.G4081C	p.G1361R	TGGTCCCTTCTCC	.	242	84	193	0	.	71	G	11446083	C	G	11446083	3	3	74	1	0	0	0	0	1	0	0	0	15876	681	24	4	920	4	THSD7A	7	11446083	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		11446083	147692580	35	10089											
ABCA13	154664	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	48318670	48318670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABCA13	NM_152701	exon18	c.C7879A	p.Q2627K	ATGAACCAATCTA	.	55	20	63	0	.	521	A	48318670	C	A	48318670	3	1	74	1	0	0	0	0	1	0	0	0	31	595	21	3	7778	3	ABCA13	7	48318670	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	36872587	48318670	110819993	36	10090											
HIP1	3092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75174427	75174427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HIP1	NM_005338	exon26	c.C2619G	p.I873M	GGCTGAGATAAGT	.	62	25	78	0	.	1085	C	75174427	G	C	75174427	3	2	74	1	0	0	0	0	1	0	0	0	7114	932	33	4	518	4	HIP1	7	75174427	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	26855757	75174427	83964236	37	10091											
CASD1	64921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94164818	94164818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CASD1	NM_022900	exon8	c.G826C	p.E276Q	CTTCCTGAATCGA	.	194	77	191	0	.	70	C	94164818	G	C	94164818	3	2	74	1	0	0	0	0	1	0	0	0	2664	1291	45	4	856	4	CASD1	7	94164818	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	18990391	94164818	64973845	38	10092											
ZNF394	84124	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	99091412	99091412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF394	NM_032164	exon3	c.A1426G	p.K476E	AGCTCTTCTCGCA	.	222	69	190	0	.	90	C	99091412	T	C	99091412	3	2	74	1	0	0	0	0	1	0	0	0	17877	1792	62	2	263	2	ZNF394	7	99091412	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	4926594	99091412	60047251	39	10093											
DNAJC2	27000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102957429	102957429	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJC2	NM_014377	exon13	c.G1275A	p.E425E	CTCTTTCTCTTTT	.	232	88	280	0	.	158	T	102957429	C	T	102957429	2	4	74	1	0	0	0	0	0	0	0	1	4639	912	32	3		3	DNAJC2	7	102957429	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	3866017	102957429	56181234	40	10094											
CPA5	93979	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	130007288	130007288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CPA5	NM_080385	exon11	c.C914T	p.A305V	TGGCTGCCATAGT	.	301	91	269	0	.	92	T	130007288	C	T	130007288	3	4	74	1	0	0	0	0	1	0	0	0	3793	739	26	3	948	3	CPA5	7	130007288	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	27049859	130007288	29131375	41	10095											
EXOC4	60412	ucsc.edu;bcgsc.ca	37	7	133314861	133314861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EXOC4	NM_021807	exon10	c.G1481A	p.R494K	GAGCCAGAAACAT	.	89	29	101	0	.	159	A	133314861	G	A	133314861	3	1	74	1	0	0	0	0	1	0	0	0	5306	942	33	3	1528	3	EXOC4	7	133314861	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	3307573	133314861	25823802	42	10096											
ZNF395	55893	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	28210089	28210089	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF395	NM_018660	exon7	c.920+1G>A	.	CACATACCCCAGA	.	108	30	52	0	.	90	T	28210089	C	T	28210089	5	4	74	1	0	0	0	0	0	0	1	0	17878	521	18	3	640	3	ZNF395	8	28210089	Splice_Site	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		28210089	118153933	43	10097											
THAP1	55145	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42693397	42693397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THAP1	NM_018105	exon3	c.G350T	p.G117V	AGTAATCCAATAG	.	124	65	135	0	.	90	A	42693397	C	A	42693397	3	1	74	1	0	0	0	0	1	0	0	0	15838	855	30	3	295	3	THAP1	8	42693397	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	14483308	42693397	103670625	44	10098											
LRP12	29967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	105503084	105503084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP12	NM_013437	exon7	c.C2397T	p.A799A	ATCTGAGGCAAGA	.	160	37	131	0	.	90	A	105503084	G	A	105503084	2	1	74	1	0	0	0	0	0	0	0	1	8954	987	35	3		3	LRP12	8	105503084	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	62809687	105503084	40860938	45	10099											
CSMD3	114788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	113585826	113585826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CSMD3	NM_198123	exon24	c.C3946A	p.R1316S	GTCCGCGCATAGA	.	134	35	116	0	.	1132	T	113585826	G	T	113585826	3	4	74	1	0	0	0	0	1	0	0	0	3946	1087	38	1	7369	1	CSMD3	8	113585826	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	8082742	113585826	32778196	46	10100											
RNF139	11236	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125498418	125498418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF139	NM_007218	exon2	c.G528T	p.E176D	CAGAGAGACTTTA	.	192	104	121	0	.	226	T	125498418	G	T	125498418	3	4	74	1	0	0	0	0	1	0	0	0	13442	933	33	3	534	3	RNF139	8	125498418	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	11912592	125498418	20865604	47	10101											
CYP11B2	1585	hgsc.bcm.edu;bcgsc.ca	37	8	143996601	143996601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CYP11B2	NM_000498	exon3	c.G456C	p.K152N	CACGGCCTTGGGC	.	297	24	196	0	.	90	G	143996601	C	G	143996601	3	3	74	1	0	0	0	0	1	0	0	0	4146	680	24	4	1083	4	CYP11B2	8	143996601	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	18498183	143996601	2367421	48	10102											
KANK1	23189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	713074	713074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KANK1	NM_001256876	exon7	c.T2308C	p.Y770H	GACAACTATCTGG	.	106	40	109	0	.	517	C	713074	T	C	713074	3	2	74	1	0	0	0	0	1	0	0	0	7976	1522	53	2	2314	2	KANK1	9	713074	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10		713074	140500357	49	10103											
AQP3	360	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33442307	33442307	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AQP3	NM_004925	exon5	c.A702G	p.A234A	GAAGACTGCAGAG	.	60	21	69	1	.	90	C	33442307	T	C	33442307	2	2	74	1	0	0	0	0	0	0	0	1	827	1567	55	2		2	AQP3	9	33442307	Silent	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	32729233	33442307	107771124	50	10104											
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	79322807	79322807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRUNE2	NM_015225	exon8	c.G4383A	p.K1461K	AAGATCCTTTTCA	.	163	45	142	0	.	157	T	79322807	C	T	79322807	2	4	74	1	0	0	0	0	0	0	0	1	12641	680	24	3		3	PRUNE2	9	79322807	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	45880500	79322807	61890624	51	10105											
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	131022366	131022366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GOLGA2	NM_004486	exon18	c.C1780T	p.L594L	CCTTCAGCTCGCT	.	40	8	33	0	.	91	A	131022366	G	A	131022366	2	1	74	1	0	0	0	0	0	0	0	1	6552	962	34	3		3	GOLGA2	9	131022366	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	51699559	131022366	10191065	52	10106											
PPAPDC3	84814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	134183331	134183331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPAPDC3	NM_032728	exon2	c.C473T	p.T158M	TCATGACGGTGGC	.	31	8	12	0	.	153	T	134183331	C	T	134183331	3	4	74	1	0	0	0	0	1	0	0	0	12296	536	19	1	479	1	PPAPDC3	9	134183331	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	3160965	134183331	7030100	53	10107											
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	73767842	73767842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHST3	NM_004273	exon3	c.C1053T	p.S351S	CCTGTCCGCGGAG	.	39	19	28	0	.	90	T	73767842	C	T	73767842	2	4	74	1	0	0	0	0	0	0	0	1	3405	639	23	1		1	CHST3	10	73767842	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		73767842	61766905	54	10108											
MRPS16	51021	ucsc.edu;bcgsc.ca	37	10	75010617	75010617	+	Missense_Mutation	SNP	T	T	C	rs146290698		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MRPS16	NM_016065	exon3	c.A407G	p.E136G	TATGTTTCTGTAG	.	148	54	137	2	T|1.000;C|0.000	90	C	75010617	T	C	75010617	3	2	74	1	0	0	0	0	1	0	0	0	9826	1783	62	2	10	2	MRPS16	10	75010617	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	1242775	75010617	60524130	55	10109											
MUC5B	727897	bcgsc.ca;mdanderson.org	37	11	1276338	1276338	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_002458	exon36	c.G15732A	p.K5244K	TTGCAAGGACATG	.	197	61	153	1	.	.	A	1276338	G	A	1276338	2	1	74	1	0	0	0	0	0	0	0	1	9979	991	35	3		3	MUC5B	11	1276338	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10		1276338	133730178	56	10110											
SMPD1	6609	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6412065	6412065	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMPD1	NM_000543	exon1	c.G237A	p.R79R	GCCCCGGCTCCGA	.	90	23	91	0	.	90	A	6412065	G	A	6412065	2	1	74	1	0	0	0	0	0	0	0	1	14804	1190	42	3		3	SMPD1	11	6412065	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	5135727	6412065	128594451	57	10111											
RBMXL2	27288	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7111267	7111267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBMXL2	NM_014469	exon1	c.G916T	p.G306C	GGAGGAGGCCGCT	.	109	48	87	0	.	68	T	7111267	G	T	7111267	3	4	74	1	0	0	0	0	1	0	0	0	13154	1000	35	3	918	3	RBMXL2	11	7111267	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	699202	7111267	127895249	58	10112											
SYT9	143425	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7324549	7324549	+	Missense_Mutation	SNP	C	C	T	rs200034628		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SYT9	NM_175733	exon2	c.C425T	p.T142M	CCCAGACGGGGAT	.	65	23	70	0	C|0.999;T|0.000	155	T	7324549	C	T	7324549	3	4	74	1	0	0	0	0	1	0	0	0	15478	536	19	1	431	1	SYT9	11	7324549	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	213282	7324549	127681967	59	10113											
PRMT3	10196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20409581	20409581	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRMT3	NM_005788	exon2	c.G45T	p.V15V	CGCTGTGGAGAAT	.	213	76	186	0	.	90	T	20409581	G	T	20409581	2	4	74	1	0	0	0	0	0	0	0	1	12538	1335	47	3		3	PRMT3	11	20409581	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	13085032	20409581	114596935	60	10114											
FANCF	2188	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22646565	22646565	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCF	NM_022725	exon1	c.T792C	p.T264T	GCGGCTAGTCACT	.	108	32	67	0	.	1083	G	22646565	A	G	22646565	2	3	74	1	0	0	0	0	0	0	0	1	5667	407	15	2		2	FANCF	11	22646565	Silent	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	2236984	22646565	112359951	61	10115											
TTC17	55761	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	43411338	43411338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TTC17	NM_018259	exon3	c.G386C	p.G129A	ATGATGGCACATA	.	203	58	219	0	.	95	C	43411338	G	C	43411338	3	2	74	1	0	0	0	0	1	0	0	0	16681	1203	42	4	396	4	TTC17	11	43411338	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	20764773	43411338	91595178	62	10116											
OR5F1	338674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55761365	55761365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5F1	NM_003697	exon1	c.C737T	p.T246I	ATGGCTGTCAGGT	.	85	34	92	0	.	70	A	55761365	G	A	55761365	3	1	74	1	0	0	0	0	1	0	0	0	11158	1377	48	3	210	3	OR5F1	11	55761365	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	12350027	55761365	79245151	63	10117											
OR5T2	219464	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56000212	56000212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5T2	NM_001004746	exon1	c.A450T	p.E150D	AAAGCATTCTGTG	.	208	77	177	0	.	70	A	56000212	T	A	56000212	3	1	74	1	0	0	0	0	1	0	0	0	11182	1490	52	4	628	4	OR5T2	11	56000212	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	238847	56000212	79006304	64	10118											
PPP2R5B	5526	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64700298	64700298	+	Missense_Mutation	SNP	A	A	G	rs75667682	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP2R5B	NM_006244	exon12	c.A1178G	p.N393S	AGGACAACTGCCA	.	132	42	118	1	.	660	G	64700298	A	G	64700298	3	3	74	1	0	0	0	0	1	0	0	0	12393	43	2	2	1220	2	PPP2R5B	11	64700298	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	8700086	64700298	70306218	65	10119											
SLC22A20	440044	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64981537	64981537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC22A20	NM_001004326	exon1	c.C194T	p.S65L	ACGACTCGGGGGC	.	63	20	65	0	.	23	T	64981537	C	T	64981537	3	4	74	1	0	0	0	0	1	0	0	0	14451	893	31	1	196	1	SLC22A20	11	64981537	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	281239	64981537	70024979	66	10120											
TPCN2	219931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68835002	68835002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TPCN2	NM_139075	exon8	c.C758G	p.T253S	GGCTGACCTACTT	.	56	10	46	0	.	90	G	68835002	C	G	68835002	3	3	74	1	0	0	0	0	1	0	0	0	16393	507	18	4	788	4	TPCN2	11	68835002	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	3853465	68835002	66171514	67	10121											
IL18	3606	hgsc.bcm.edu;ucsc.edu	37	11	112020884	112020884	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL18	NM_001562	exon4	c.C137G	p.S46X	ATGACTGATAATT	.	100	37	94	0	.	90	C	112020884	G	C	112020884	4	2	74	1	0	0	0	0	0	1	0	0	7645	1294	45	4	456	4	IL18	11	112020884	Nonsense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	43185882	112020884	22985632	68	10122											
APLP2	334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130011950	130011950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	APLP2	NM_001642	exon17	c.T2171G	p.I724S	GCACCATCAGCCA	.	111	33	91	0	.	93	G	130011950	T	G	130011950	3	3	74	1	0	0	0	0	1	0	0	0	779	1435	50	5	2237	5	APLP2	11	130011950	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	17991066	130011950	4994566	69	10123											
TMEM132B	114795	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126138497	126138497	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMEM132B	NM_052907	exon9	c.A2478G	p.R826R	GGAGAGAGCAGTC	.	176	57	92	0	.	185	G	126138497	A	G	126138497	2	3	74	1	0	0	0	0	0	0	0	1	16043	301	11	2		2	TMEM132B	12	126138497	Silent	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10		126138497	7713398	70	10124											
POLE	5426	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	133219191	133219191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POLE	NM_006231	exon37	c.A4853G	p.N1618S	CCATAGTTGATCT	.	141	39	77	0	.	233	C	133219191	T	C	133219191	3	2	74	1	0	0	0	0	1	0	0	0	12196	1725	60	2	2059	2	POLE	12	133219191	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	7080694	133219191	632704	71	10125											
ATP12A	479	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25274939	25274939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ATP12A,NS,carcinoma,+1	ATP12A	NM_001185085	exon13	c.A1778G	p.D593G	CATTTGACATAGA	.	140	60	135	0	.	137	G	25274939	A	G	25274939	3	3	74	1	0	0	0	0	1	0	0	0	1122	275	10	2	1828	2	ATP12A	13	25274939	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10		25274939	89894939	72	10126											
FREM2	341640	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	39343836	39343836	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FREM2	NM_207361	exon4	c.T5532C	p.D1844D	GAGTGATGGGGAG	.	303	114	259	0	.	100	C	39343836	T	C	39343836	2	2	74	1	0	0	0	0	0	0	0	1	6045	1461	51	2		2	FREM2	13	39343836	Silent	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	14068897	39343836	75826042	73	10127											
DOCK9	23348	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99515318	99515318	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon32	c.G3537A	p.R1179R	ATTGATCCGCTGG	.	117	43	134	0	.	90	T	99515318	C	T	99515318	2	4	74	1	0	0	0	0	0	0	0	1	4694	842	30	3		3	DOCK9	13	99515318	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	60171482	99515318	15654560	74	10128											
CHRM5	1133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34355738	34355738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CHRM5,brain,glioma,-1	CHRM5	NM_012125	exon3	c.T820C	p.S274P	TCATCCTCCCGCA	.	54	24	33	0	.	91	C	34355738	T	C	34355738	3	2	74	1	0	0	0	0	1	0	0	0	3380	1551	54	2	822	2	CHRM5	15	34355738	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10		34355738	68175654	75	10129											
UNC13C	440279	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	54590036	54590036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UNC13C	NM_001080534	exon10	c.C4016A	p.S1339Y	CTGTATCTGGGGC	.	307	104	341	0	.	51	A	54590036	C	A	54590036	3	1	74	1	0	0	0	0	1	0	0	0	16983	913	32	3	4054	3	UNC13C	15	54590036	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	20234298	54590036	47941356	76	10130											
CELF6	60677	hgsc.bcm.edu;bcgsc.ca	37	15	72581260	72581260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CELF6	NM_001172684	exon9	c.G1042T	p.G348C	CCACGCCGGGGCT	.	207	92	194	0	.	154	A	72581260	C	A	72581260	3	1	74	1	0	0	0	0	1	0	0	0	3220	652	23	1	419	1	CELF6	15	72581260	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	17991224	72581260	29950132	77	10131											
IGF1R	3480	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99467825	99467825	+	Silent	SNP	G	G	A	rs146023463		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IGF1R	NM_000875	exon13	c.G2694A	p.P898P	AAACCCGGGGAAC	.	195	72	198	0	G|1.000;A|0.000	1490	A	99467825	G	A	99467825	2	1	74	1	0	0	0	0	0	0	0	1	7571	1103	39	1		1	IGF1R	15	99467825	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	26886565	99467825	3063567	78	10132											
TIGD7	91151	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	3349414	3349414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TIGD7	NM_033208	exon2	c.A1201G	p.N401D	GAAGATTTTCCCA	.	220	81	243	0	.	90	C	3349414	T	C	3349414	3	2	74	1	0	0	0	0	1	0	0	0	15898	1841	64	2	452	2	TIGD7	16	3349414	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10		3349414	87005339	79	10133											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24815534	24815534	+	Missense_Mutation	SNP	A	A	G	rs146427035	byfrequency	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6A	NM_014494	exon12	c.A3731G	p.H1244R	ATAAACATAGCCT	.	54	22	88	0	A|0.995;G|0.005	92	G	24815534	A	G	24815534	3	3	74	1	0	0	0	0	1	0	0	0	16337	217	8	2	3777	2	TNRC6A	16	24815534	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	21466120	24815534	65539219	80	10134											
RLTPR	146206	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67683061	67683061	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RLTPR	NM_001013838	exon18	c.C1674T	p.F558F	GAACTTCAACGTC	.	143	50	132	0	.	67	T	67683061	C	T	67683061	2	4	74	1	0	0	0	0	0	0	0	1	13394	825	29	3		3	RLTPR	16	67683061	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	42867527	67683061	22671692	81	10135											
FANCA	2175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	89849430	89849430	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCA	NM_000135	exon16	c.G1551A	p.R517R	GGCCAGCCGTGTC	.	394	155	327	0	.	1130	T	89849430	C	T	89849430	2	4	74	1	0	0	0	0	0	0	0	1	5662	726	26	3		3	FANCA	16	89849430	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	22166369	89849430	505323	82	10136											
ACADVL	37	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7123814	7123814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ACADVL	NM_001270447	exon4	c.C239A	p.S80Y	ACCCCTCTGACGC	.	102	36	79	0	.	93	A	7123814	C	A	7123814	3	1	74	1	0	0	0	0	1	0	0	0	116	913	32	3	180	3	ACADVL	17	7123814	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10		7123814	74071396	83	10137											
CNTROB	116840	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7851016	7851016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNTROB	NM_001037144	exon14	c.G2121C	p.E707D	GCTGGAGGGCCTC	.	124	72	107	0	.	153	C	7851016	G	C	7851016	3	2	74	1	0	0	0	0	1	0	0	0	3651	991	35	4	2175	4	CNTROB	17	7851016	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	727202	7851016	73344194	84	10138											
VAMP2	6844	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	8064968	8064968	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	VAMP2	NM_014232	exon3	c.C240T	p.S80S	GGCTGCGCTTGTT	.	131	13	140	0	.	90	A	8064968	G	A	8064968	2	1	74	1	0	0	0	0	0	0	0	1	17110	1078	38	1		1	VAMP2	17	8064968	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	213952	8064968	73130242	85	10139											
KIAA0100	9703	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26961916	26961916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0100	NM_014680	exon16	c.A2689G	p.M897V	CCTTCATCAGCTC	.	80	34	116	0	.	93	C	26961916	T	C	26961916	3	2	74	1	0	0	0	0	1	0	0	0	8154	1435	50	2	4114	2	KIAA0100	17	26961916	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	18896948	26961916	54233294	86	10140											
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56692692	56692692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TEX14	NM_001201457	exon8	c.G800A	p.G267E	CTGCTCCCATTCC	.	124	5	93	0	.	810	T	56692692	C	T	56692692	3	4	74	1	0	0	0	0	1	0	0	0	15775	623	22	3	3797	3	TEX14	17	56692692	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	29730776	56692692	24502518	87	10141											
CACNG4	27092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65026831	65026831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CACNG4	NM_014405	exon4	c.G695A	p.R232K	ATGCCAGGATGCC	.	173	68	150	0	.	90	A	65026831	G	A	65026831	3	1	74	1	0	0	0	0	1	0	0	0	2559	1000	35	3	709	3	CACNG4	17	65026831	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	8334139	65026831	16168379	88	10142											
DNAH17	8632	hgsc.bcm.edu;ucsc.edu	37	17	76472713	76472713	+	Nonsense_Mutation	SNP	C	C	A	rs116230343	byfrequency;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH17	NM_173628	exon52	c.G8095T	p.E2699X	CTTTTTCGTCAAC	.	513	295	279	0	C|0.986;T|0.014	142	A	76472713	C	A	76472713	4	1	74	1	0	0	0	0	0	1	0	0	4601	893	31	1	5413	1	DNAH17	17	76472713	Nonsense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	11445882	76472713	4722497	89	10143											
ZNF24	7572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	32920511	32920511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.A104G	p.E35G	CCCTCTTCGCCAT	.	61	22	46	0	.	90	C	32920511	T	C	32920511	3	2	74	1	0	0	0	0	1	0	0	0	17789	1783	62	2	1014	2	ZNF24	18	32920511	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10		32920511	45156737	90	10144	56	2									
ZNF24	7572	hgsc.bcm.edu;ucsc.edu	37	18	32920512	32920512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.G103T	p.E35X	CCTCTTCGCCATC	.	59	20	45	0	.	90	A	32920512	C	A	32920512	4	1	74	1	0	0	0	0	0	1	0	0	17789	893	31	1	1015	1	ZNF24	18	32920512	Nonsense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	1	32920512	45156736	91	10145	56	2									
FHOD3	80206	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	18	34182680	34182680	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FHOD3	NM_025135	exon8	c.A762G	p.K254K	GGAAAAAGATGGA	.	244	22	236	0	.	139	G	34182680	A	G	34182680	2	3	74	1	0	0	0	0	0	0	0	1	5883	69	3	2		2	FHOD3	18	34182680	Silent	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	1262168	34182680	43894568	92	10146											
COMP	1311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18899995	18899995	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COMP	NM_000095	exon5	c.C502T	p.L168L	AAGCCAGCCCCAC	.	82	31	87	0	.	90	A	18899995	G	A	18899995	2	1	74	1	0	0	0	0	0	0	0	1	3724	962	34	3		3	COMP	19	18899995	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10		18899995	40228988	93	10147											
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39899237	39899239	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP36	NM_003407	exon2	c.897_899del	p.299_300del	GGGGGGCTCTGAC	.	98	21	84	0	.	227	-	39899239	CTC	-	39899237	7	5	74	1	0	1	0	1	0	0	0	0	17642	784	28	0	885	0	ZFP36	19	39899237	In_Frame_Del	DEL	CTC	TCGA-DD-A3A1-01A-11D-A20W-10	20999242	39899237	19229746	94	10148											
RSPH6A	81492	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	46305378	46305378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RSPH6A	NM_030785	exon4	c.G1798T	p.E600X	CCTTACCTGCATC	.	128	45	108	0	.	91	A	46305378	C	A	46305378	4	1	74	1	0	0	0	0	0	1	0	0	13707	695	24	3	367	3	RSPH6A	19	46305378	Nonsense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	6406141	46305378	12823605	95	10149											
MYPOP	339344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46393962	46393962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYPOP	NM_001012643	exon3	c.C1119T	p.L373L	CGGAGGGAGCGGG	.	75	25	64	0	.	90	A	46393962	G	A	46393962	2	1	74	1	0	0	0	0	0	0	0	1	10099	1161	41	3		3	MYPOP	19	46393962	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	88584	46393962	12735021	96	10150											
DHX34	9704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47876048	47876048	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DHX34	NM_014681	exon8	c.C1830A	p.A610A	CGCAGCCGCACTT	.	159	106	186	0	.	231	A	47876048	C	A	47876048	2	1	74	1	0	0	0	0	0	0	0	1	4507	639	23	1		1	DHX34	19	47876048	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	1482086	47876048	11252935	97	10151											
ZFP28	140612	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57066068	57066068	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP28	NM_020828	exon8	c.C1914G	p.I638M	GAGAATCCATACT	.	110	31	77	0	.	91	G	57066068	C	G	57066068	3	3	74	1	0	0	0	0	1	0	0	0	17639	845	30	4	1944	4	ZFP28	19	57066068	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	9190020	57066068	2062915	98	10152											
EDN3	1908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	57896179	57896179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EDN3	NM_207034	exon3	c.G473T	p.R158L	ACTTGCGCTGCGC	.	188	65	127	0	.	91	T	57896179	G	T	57896179	3	4	74	1	0	0	0	0	1	0	0	0	4918	1087	38	1	483	1	EDN3	20	57896179	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10		57896179	5129341	99	10153											
KRTAP26-1	388818	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	31691918	31691918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KRTAP26-1	NM_203405	exon1	c.C436A	p.Q146K	AGAATTGGGGGCG	.	140	71	164	0	.	69	T	31691918	G	T	31691918	3	4	74	1	0	0	0	0	1	0	0	0	8543	1357	47	3	200	3	KRTAP26-1	21	31691918	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10		31691918	16437977	100	10154											
GAB4	128954	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17489003	17489003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GAB4	NM_001037814	exon1	c.T2A	p.M1K	AGGGACATGGGGG	.	109	34	95	0	.	91	T	17489003	A	T	17489003	3	4	74	1	0	0	0	0	1	0	0	0	6151	217	8	4	1762	4	GAB4	22	17489003	Missense_Mutation	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10		17489003	33815563	101	10155											
RAC2	5880	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37622734	37622734	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAC2	NM_002872	exon6	c.G558A	p.K186K	GGCGCGCTTCTGC	.	70	24	55	0	.	723	T	37622734	C	T	37622734	2	4	74	1	0	0	0	0	0	0	0	1	12975	796	28	3		3	RAC2	22	37622734	Silent	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	20133731	37622734	13681832	102	10156											
TNRC6B	23112	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40708594	40708594	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6B	NM_001162501	exon18	c.G4521T	p.G1507G	GCTGGGGGGTACA	.	116	46	123	0	.	22	T	40708594	G	T	40708594	2	4	74	1	0	0	0	0	0	0	0	1	16338	1219	43	3		3	TNRC6B	22	40708594	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	3085860	40708594	10595972	103	10157											
PACSIN2	11252	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	43284655	43284655	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PACSIN2	NM_007229	exon5	c.T603G	p.V201V	CTTAAGAACATCT	.	236	103	202	0	.	68	C	43284655	A	C	43284655	2	2	74	1	0	0	0	0	0	0	0	1	11375	233	9	5		5	PACSIN2	22	43284655	Silent	SNP	A	TCGA-DD-A3A1-01A-11D-A20W-10	2576061	43284655	8019911	104	10158											
MCAT	27349	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	43538972	43538972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MCAT	NM_014507	exon1	c.C383T	p.S128L	GCCAGCGATGCCA	.	199	70	136	0	.	91	A	43538972	G	A	43538972	3	1	74	1	0	0	0	0	1	0	0	0	9372	1059	37	1	805	1	MCAT	22	43538972	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	254317	43538972	7765594	105	10159											
EFCAB6	64800	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43936088	43936088	+	Silent	SNP	G	G	A	rs144783076	byfrequency	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFCAB6	NM_022785	exon28	c.C3798T	p.D1266D	CGAGACGTCAGGG	.	145	53	93	0	G|1.000;A|0.000	97	A	43936088	G	A	43936088	2	1	74	1	0	0	0	0	0	0	0	1	4939	1136	40	1		1	EFCAB6	22	43936088	Silent	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10	397116	43936088	7368478	106	10160											
FAM47C	442444	hgsc.bcm.edu;bcgsc.ca	37	X	37026590	37026590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM47C	NM_001013736	exon1	c.G107A	p.R36K	AGCACAGGCGCCT	.	313	218	285	0	.	111	A	37026590	G	A	37026590	3	1	74	1	0	0	0	0	1	0	0	0	5571	1000	35	3	109	3	FAM47C	23	37026590	Missense_Mutation	SNP	G	TCGA-DD-A3A1-01A-11D-A20W-10		37026590	118243970	107	10161											
TBX22	50945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79282219	79282219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TBX22	NM_016954	exon5	c.T650C	p.M217T	AATCCATGCATAA	.	63	44	71	0	.	628	C	79282219	T	C	79282219	3	2	74	1	0	0	0	0	1	0	0	0	15655	1464	51	2	668	2	TBX22	23	79282219	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	42255629	79282219	75988341	108	10162											
FAM46D	169966	broad.mit.edu;bcgsc.ca	37	X	79699173	79699173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM46D	NM_001170574	exon5	c.C1135T	p.P379S	TACCACCCACTGC	.	33	5	44	0	.	130	T	79699173	C	T	79699173	3	4	74	1	0	0	0	0	1	0	0	0	5568	623	22	3	1137	3	FAM46D	23	79699173	Missense_Mutation	SNP	C	TCGA-DD-A3A1-01A-11D-A20W-10	416954	79699173	75571387	109	10163											
SLITRK4	139065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717685	142717685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLITRK4	NM_001184750	exon2	c.A1240G	p.T414A	TCACTGTAATTTG	.	109	80	117	0	.	193	C	142717685	T	C	142717685	3	2	74	1	0	0	0	0	1	0	0	0	14745	1638	57	2	1277	2	SLITRK4	23	142717685	Missense_Mutation	SNP	T	TCGA-DD-A3A1-01A-11D-A20W-10	63018512	142717685	12552875	110	10164											
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	64644486	64644486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ROR1	NM_005012	exon9	c.G2762A	p.G921E	TACTAGGAGACGC	.	197	83	236	0	.	1536	A	64644486	G	A	64644486	3	1	75	1	0	0	0	0	1	0	0	0	13526	1174	41	3	2804	3	ROR1	1	64644486	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		64644486	184606135	1	10165											
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89735097	89735097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GBP5	NM_052942	exon3	c.C142G	p.R48G	CAGTGCGATAGAG	.	378	150	344	0	.	91	C	89735097	G	C	89735097	3	2	75	1	0	0	0	0	1	0	0	0	6277	1058	37	4	1658	4	GBP5	1	89735097	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	25090611	89735097	159515524	2	10166											
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109261510	109261510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FNDC7	NM_001144937	exon4	c.T437G	p.I146S	TGTCCATTATGCG	.	197	75	227	0	.	92	G	109261510	T	G	109261510	3	3	75	1	0	0	0	0	1	0	0	0	5973	1493	52	5	451	5	FNDC7	1	109261510	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	19526413	109261510	139989111	3	10167											
CTSE	1510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206325312	206325312	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CTSE	NM_001910	exon5	c.A537C	p.A179A	GGATGCAGAGTTT	.	288	111	253	0	.	91	C	206325312	A	C	206325312	2	2	75	1	0	0	0	0	0	0	0	1	4033	175	7	5		5	CTSE	1	206325312	Silent	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	97063802	206325312	42925309	4	10168											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229794870	229794870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	URB2	NM_014777	exon10	c.A4401C	p.K1467N	TGTGAAAAGTCTG	.	85	5	87	0	.	174	C	229794870	A	C	229794870	3	2	75	1	0	0	0	0	1	0	0	0	17022	11	1	5	4435	5	URB2	1	229794870	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	23469558	229794870	19455751	5	10169											
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231337125	231337125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TRIM67	NM_001004342	exon5	c.C1396T	p.R466C	ATCAAGCGCGTCC	.	133	48	113	0	.	229	T	231337125	C	T	231337125	3	4	75	1	0	0	0	0	1	0	0	0	16537	768	27	1	1414	1	TRIM67	1	231337125	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	1542255	231337125	17913496	6	10170											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	33172789	33172789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LTBP1	NM_206943	exon1	c.A398G	p.K133R	TCACCAAACAAGG	.	70	19	56	0	.	230	G	33172789	A	G	33172789	3	3	75	1	0	0	0	0	1	0	0	0	9073	14	1	2	400	2	LTBP1	2	33172789	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10		33172789	210026584	7	10171											
DYSF	8291	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71755439	71755439	+	Missense_Mutation	SNP	G	G	T	rs144202114	byfrequency;alternate_allele	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DYSF	NM_001130982	exon14	c.G1288T	p.V430L	GATGCCGTGATGG	.	106	43	107	0	G|0.996;A|0.004	158	T	71755439	G	T	71755439	3	4	75	1	0	0	0	0	1	0	0	0	4859	1145	40	1	1434	1	DYSF	2	71755439	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	38582650	71755439	171443934	8	10172											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84777070	84777070	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DNAH6	NM_001370	exon9	c.T1374C	p.N458N	GGTAAATGCTGTT	.	111	18	107	0	.	69	C	84777070	T	C	84777070	2	2	75	1	0	0	0	0	0	0	0	1	4605	1461	51	2		2	DNAH6	2	84777070	Silent	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	13021631	84777070	158422303	9	10173											
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219513586	219513586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF142	NM_001105537	exon6	c.G1045T	p.D349Y	CAAAATCACAGTG	.	143	53	97	0	.	137	A	219513586	C	A	219513586	3	1	75	1	0	0	0	0	1	0	0	0	17728	826	29	3	4038	3	ZNF142	2	219513586	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	134736516	219513586	23685787	10	10174											
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37695227	37695227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITGA9	NM_002207	exon17	c.G1862A	p.R621H	ATTGCCGTTCAGA	.	164	61	179	0	.	715	A	37695227	G	A	37695227	3	1	75	1	0	0	0	0	1	0	0	0	7883	1145	40	1	1928	1	ITGA9	3	37695227	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		37695227	160327203	11	10175											
HYAL3	8372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50332788	50332788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HYAL3	NM_001200030	exon2	c.C246T	p.P82P	AAAGTAGGGATAG	.	61	18	86	0	.	279	A	50332788	G	A	50332788	2	1	75	1	0	0	0	0	0	0	0	1	7465	987	35	3		3	HYAL3	3	50332788	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	12637561	50332788	147689642	12	10176											
PTPRG	5793	broad.mit.edu;bcgsc.ca	37	3	62240818	62240818	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PTPRG	NM_002841	exon16	c.T2487C	p.P829P	CATTCCTGTCAAA	.	107	8	118	0	.	419	C	62240818	T	C	62240818	2	2	75	1	0	0	0	0	0	0	0	1	12802	1567	55	2		2	PTPRG	3	62240818	Silent	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	11908030	62240818	135781612	13	10177											
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	63982027	63982027	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ATXN7	NM_000333	exon12	c.G2529A	p.S843S	CAGCTCGAGCAGC	.	235	11	262	0	.	90	A	63982027	G	A	63982027	2	1	75	1	0	0	0	0	0	0	0	1	1215	1045	37	1		1	ATXN7	3	63982027	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	1741209	63982027	134040403	14	10178											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	123987858	123987858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KALRN	NM_003947	exon5	c.C719T	p.A240V	TGAAGGCCCCTGT	.	230	17	195	0	.	738	T	123987858	C	T	123987858	3	4	75	1	0	0	0	0	1	0	0	0	7975	739	26	3	737	3	KALRN	3	123987858	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	60005831	123987858	74034572	15	10179											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3190808	3190808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HTT	NM_002111	exon40	c.A5356G	p.I1786V	ATCCACATCTTCA	.	288	112	255	0	.	281	G	3190808	A	G	3190808	3	3	75	1	0	0	0	0	1	0	0	0	7457	217	8	2	5514	2	HTT	4	3190808	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10		3190808	187963468	16	10180											
MAN2B2	23324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6595009	6595009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MAN2B2	NM_015274	exon6	c.G790A	p.E264K	TATGCCGAGGCCC	.	112	7	125	0	.	92	A	6595009	G	A	6595009	3	1	75	1	0	0	0	0	1	0	0	0	9217	1059	37	1	812	1	MAN2B2	4	6595009	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	3404201	6595009	184559267	17	10181											
ENOPH1	58478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83378171	83378171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ENOPH1	NM_021204	exon5	c.T626G	p.F209C	TTTTGTTTCTGAC	.	176	55	168	0	.	22	G	83378171	T	G	83378171	3	3	75	1	0	0	0	0	1	0	0	0	5124	1841	64	5	644	5	ENOPH1	4	83378171	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	76783162	83378171	107776105	18	10182											
TACR3	6870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104640561	104640561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TACR3	NM_001059	exon1	c.C272T	p.A91V	CCATACGCCAGGG	.	167	46	137	1	.	525	A	104640561	G	A	104640561	3	1	75	1	0	0	0	0	1	0	0	0	15504	1087	38	1	1145	1	TACR3	4	104640561	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	21262390	104640561	86513715	19	10183											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134075516	134075516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PCDH10	NM_032961	exon2	c.A2686C	p.N896H	CGAGTTAACAGGT	.	174	59	183	0	.	92	C	134075516	A	C	134075516	3	2	75	1	0	0	0	0	1	0	0	0	11507	362	13	5	2752	5	PCDH10	4	134075516	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	29434955	134075516	57078760	20	10184											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155157679	155157679	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DCHS2	NM_017639	exon25	c.G6760T	p.E2254X	CCTTCTCATTTCC	.	73	27	92	0	.	94	A	155157679	C	A	155157679	4	1	75	1	0	0	0	0	0	1	0	0	4288	835	29	3	1994	3	DCHS2	4	155157679	Nonsense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	21082163	155157679	35996597	21	10185											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175896738	175896738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM29	NM_001130703	exon4	c.A62C	p.Q21P	ACATCCAGGATGA	.	142	55	138	0	.	729	C	175896738	A	C	175896738	3	2	75	1	0	0	0	0	1	0	0	0	247	188	7	5	64	5	ADAM29	4	175896738	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	20739059	175896738	15257538	22	10186											
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74026206	74026206	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GFM2	NM_032380	exon17	c.G1605C	p.M535I	CTCCCCCATACCA	.	133	53	139	0	.	90	G	74026206	C	G	74026206	3	3	75	1	0	0	0	0	1	0	0	0	6342	594	21	4	754	4	GFM2	5	74026206	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10		74026206	106889054	23	10187											
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74872759	74872759	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	POLK	NM_016218	exon6	c.694+1G>C	.	AAAATGGTAAGCA	.	64	24	84	0	.	229	C	74872759	G	C	74872759	5	2	75	1	0	0	0	0	0	0	1	0	12204	1275	44	4	713	4	POLK	5	74872759	Splice_Site	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	846553	74872759	106042501	24	10188											
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140203294	140203294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PCDHA5	NM_018908	exon1	c.G1934A	p.R645H	GCCACCGCCTTCT	.	275	97	208	0	.	137	A	140203294	G	A	140203294	3	1	75	1	0	0	0	0	1	0	0	0	11527	1087	38	1	1936	1	PCDHA5	5	140203294	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	65330535	140203294	40711966	25	10189											
PRELID2	153768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145176020	145176020	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRELID2	NM_182960	exon6	c.A495C	p.R165R	TCCCTGTCGTAAG	.	45	20	62	0	.	90	G	145176020	T	G	145176020	2	3	75	1	0	0	0	0	0	0	0	1	12472	1654	58	5		5	PRELID2	5	145176020	Silent	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	4972726	145176020	35739240	26	10190											
NDST1	3340	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149927947	149927947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NDST1	NM_001543	exon12	c.C2313A	p.N771K	CGCCAACCAGGTA	.	33	12	33	1	.	136	A	149927947	C	A	149927947	3	1	75	1	0	0	0	0	1	0	0	0	10255	506	18	3	2355	3	NDST1	5	149927947	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	4751927	149927947	30987313	27	10191											
ITK	3702	broad.mit.edu;bcgsc.ca	37	5	156675955	156675955	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITK	NM_005546	exon16	c.T1729C	p.L577L	TTTCGGTTGTACA	.	85	6	68	1	.	1427	C	156675955	T	C	156675955	2	2	75	1	0	0	0	0	0	0	0	1	7909	1722	60	2		2	ITK	5	156675955	Silent	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	6748008	156675955	24239305	28	10192											
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41655675	41655675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	TFEB,NS,carcinoma,+1	TFEB	NM_001167827	exon5	c.C683T	p.A228V	AGGTCCGCAGGGC	.	205	78	215	1	.	659	A	41655675	G	A	41655675	3	1	75	1	0	0	0	0	1	0	0	0	15798	1087	38	1	809	1	TFEB	6	41655675	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		41655675	129459392	29	10193											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42005030	42005030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GLI3	NM_000168	exon15	c.A3641C	p.Q1214P	AGGGTCTGATAGC	.	85	24	76	0	.	1149	G	42005030	T	G	42005030	3	3	75	1	0	0	0	0	1	0	0	0	6439	1580	55	5	1105	5	GLI3	7	42005030	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10		42005030	117133633	30	10194											
ELN	2006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73477959	73477959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ELN	NM_001081754	exon29	c.G1942A	p.G648R	CTAGTGGGAGCCG	.	479	27	345	0	.	95	A	73477959	G	A	73477959	3	1	75	1	0	0	0	0	1	0	0	0	5071	1233	43	3	2056	3	ELN	7	73477959	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	31472929	73477959	85660704	31	10195											
MLL5	55904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	104747073	104747073	+	Missense_Mutation	SNP	A	A	G	rs200234811	alternate_allele	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MLL5	NM_018682	exon19	c.A2701G	p.T901A	ACTCACACCGATA	.	208	59	166	1	.	93	G	104747073	A	G	104747073	3	3	75	1	0	0	0	0	1	0	0	0	9624	159	6	2	2771	2	MLL5	7	104747073	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	31269114	104747073	54391590	32	10196											
JHDM1D	80853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139798778	139798778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	JHDM1D	NM_030647	exon14	c.G1819A	p.E607K	CCTCTTCATTTTC	.	444	107	341	2	.	91	T	139798778	C	T	139798778	3	4	75	1	0	0	0	0	1	0	0	0	7948	835	29	3	1034	3	JHDM1D	7	139798778	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	35051705	139798778	19339885	33	10197											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141726934	141726934	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MGAM	NM_004668	exon9	c.G1002T	p.A334A	GCCTGCGCCAGCC	.	183	55	101	0	.	70	T	141726934	G	T	141726934	2	4	75	1	0	0	0	0	0	0	0	1	9541	1074	38	1		1	MGAM	7	141726934	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	1928156	141726934	17411729	34	10198											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10469481	10469481	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RP1L1	NM_178857	exon4	c.G2127A	p.S709S	GGTGCTCGATGAG	.	113	45	90	0	.	139	T	10469481	C	T	10469481	2	4	75	1	0	0	0	0	0	0	0	1	13533	871	31	1		1	RP1L1	8	10469481	Silent	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10		10469481	135894541	35	10199											
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	115938874	115938876	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FKBP15	NM_015258	exon21	c.2164_2166del	p.722_722del	GGATGTCACCTTG	.	319	101	315	0	.	25	-	115938876	CAC	-	115938874	7	5	75	1	0	1	0	1	0	0	0	0	5905	813	29	0	1525	0	FKBP15	9	115938874	In_Frame_Del	DEL	CAC	TCGA-DD-A3A2-01A-11D-A20W-10		115938874	25274557	36	10200											
ASB6	140459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132400301	132400301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ASB6	NM_017873	exon6	c.A1034C	p.N345T	TCGAAGTTTTCGG	.	67	31	53	0	.	226	G	132400301	T	G	132400301	3	3	75	1	0	0	0	0	1	0	0	0	1027	1725	60	5	235	5	ASB6	9	132400301	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	16461427	132400301	8813130	37	10201											
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139617874	139617874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM69B	NM_152421	exon5	c.A944C	p.D315A	TGGCCGACCTGCA	.	38	8	47	0	.	90	C	139617874	A	C	139617874	3	2	75	1	0	0	0	0	1	0	0	0	5603	275	10	5	962	5	FAM69B	9	139617874	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	7217573	139617874	1595557	38	10202											
LCNL1	401562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139878137	139878137	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_207510	exon1	c.G99T	p.L33L	TGACCTGGCCCTC	.	159	54	158	1	.	.	T	139878137	G	T	139878137	2	4	75	1	0	0	0	0	0	0	0	1	8688	1335	47	3		3	LCNL1	9	139878137	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	260263	139878137	1335294	39	10203											
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006861	8006861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TAF3	NM_031923	exon3	c.C1388T	p.S463L	ATAACTCATGGAC	.	109	39	108	0	.	69	T	8006861	C	T	8006861	3	4	75	1	0	0	0	0	1	0	0	0	15522	838	29	3	1398	3	TAF3	10	8006861	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10		8006861	127527886	40	10204											
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92509305	92509305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HTR7	NM_019860	exon2	c.G586T	p.G196W	ATTTCCCATTCTG	.	137	52	92	0	.	91	A	92509305	C	A	92509305	3	1	75	1	0	0	0	0	1	0	0	0	7452	594	21	3	869	3	HTR7	10	92509305	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	84502444	92509305	43025442	41	10205											
TAF5	6877	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105142994	105142994	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TAF5	NM_006951	exon7	c.1535-1G>C	.	ATTTTAGATCTTA	.	158	66	191	1	.	92	C	105142994	G	C	105142994	5	2	75	1	0	0	0	0	0	0	1	0	15525	956	33	4	1560	4	TAF5	10	105142994	Splice_Site	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	12633689	105142994	30391753	42	10206											
ADAM12	8038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127760154	127760154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM12	NM_021641	exon12	c.G1224A	p.M408I	CACCCCCATTCCT	.	176	88	180	1	.	716	T	127760154	C	T	127760154	3	4	75	1	0	0	0	0	1	0	0	0	236	594	21	3	1661	3	ADAM12	10	127760154	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	22617160	127760154	7774593	43	10207											
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7981809	7981809	+	Silent	SNP	G	G	A	rs56052845		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NLRP10	NM_176821	exon2	c.C1350T	p.N450N	GTAGTCGTTACTA	.	65	21	69	0	.	209	A	7981809	G	A	7981809	2	1	75	1	0	0	0	0	0	0	0	1	10472	1136	40	1		1	NLRP10	11	7981809	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		7981809	127024707	44	10208											
CSRP3	8048	hgsc.bcm.edu;broad.mit.edu	37	11	19204231	19204231	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CSRP3	NM_003476	exon7	c.G571T	p.E191X	TCTTTTCCACTTG	.	164	8	166	0	.	90	A	19204231	C	A	19204231	4	1	75	1	0	0	0	0	0	1	0	0	3969	864	30	3	17	3	CSRP3	11	19204231	Nonsense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	11222422	19204231	115802285	45	10209											
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	25100161	25100161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LUZP2	NM_001009909	exon12	c.C998A	p.T333N	CATTGACCAGCTT	.	71	23	70	1	.	92	A	25100161	C	A	25100161	3	1	75	1	0	0	0	0	1	0	0	0	9087	507	18	3	1044	3	LUZP2	11	25100161	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	5895930	25100161	109906355	46	10210											
WT1	7490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	32421555	32421555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	WT1	NM_024424	exon6	c.C1037T	p.T346M	ATGGGCGTTGTGT	.	261	11	269	0	.	6891	A	32421555	G	A	32421555	3	1	75	1	0	0	0	0	1	0	0	0	17405	1145	40	1	536	1	WT1	11	32421555	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	7321394	32421555	102584961	47	10211											
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64128041	64128041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RPS6KA4	NM_001006944	exon4	c.C439A	p.L147M	ATCGTGCTGGCCC	.	94	42	102	0	.	1036	A	64128041	C	A	64128041	3	1	75	1	0	0	0	0	1	0	0	0	13653	796	28	3	453	3	RPS6KA4	11	64128041	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	31706486	64128041	70878475	48	10212											
OR8D4	338662	broad.mit.edu;bcgsc.ca	37	11	123777431	123777431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	OR8D4	NM_001005197	exon1	c.T293C	p.M98T	GATGCATGATTCA	.	125	7	145	1	.	69	C	123777431	T	C	123777431	3	2	75	1	0	0	0	0	1	0	0	0	11233	1464	51	2	295	2	OR8D4	11	123777431	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	59649390	123777431	11229085	49	10213											
OR8G5	219865	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	124135110	124135110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001005198	exon1	c.C388A	p.P130T	TCCTACCCTGAAT	.	283	116	321	0	.	.	A	124135110	C	A	124135110	3	1	75	1	0	0	0	0	1	0	0	0	11236	623	22	3	390	3	OR8G5	11	124135110	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	357679	124135110	10871406	50	10214											
ITFG2	55846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2933099	2933099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITFG2	NM_018463	exon11	c.G1230T	p.E410D	GCAGGAGCTGGGC	.	85	33	83	0	.	90	T	2933099	G	T	2933099	3	4	75	1	0	0	0	0	1	0	0	0	7870	962	34	3	1272	3	ITFG2	12	2933099	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		2933099	130918796	51	10215											
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575451	6575451	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	VAMP1	NM_014231	exon2	c.C69T	p.G23G	AGGAGGGCCAGGG	.	118	48	101	1	.	90	A	6575451	G	A	6575451	2	1	75	1	0	0	0	0	0	0	0	1	17109	1190	42	3		3	VAMP1	12	6575451	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	3642352	6575451	127276444	52	10216											
FOXJ2	55810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8205442	8205442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FOXJ2	NM_018416	exon11	c.C1721G	p.T574S	TGATCACTTAGTG	.	69	28	62	0	.	230	G	8205442	C	G	8205442	3	3	75	1	0	0	0	0	1	0	0	0	6012	565	20	4	1759	4	FOXJ2	12	8205442	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	1629991	8205442	125646453	53	10217											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49425236	49425236	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MLL2	NM_003482	exon39	c.13252delG	p.E4418fs	GAGGTTCCTGCTT	.	99	34	137	0	.	612	-	49425236	C	-	49425236	7	5	75	1	0	1	0	1	0	0	0	0	9621	864	30	0	3425	0	MLL2	12	49425236	Frame_Shift_Del	DEL	C	TCGA-DD-A3A2-01A-11D-A20W-10	41219794	49425236	84426659	54	10218											
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	77158072	77158072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_015336	exon1	c.A56G	p.D19G	AGTACGATACCGA	.	51	18	66	0	.	.	G	77158072	A	G	77158072	3	3	75	1	0	0	0	0	1	0	0	0	17604	333	12	2	58	2	ZDHHC17	12	77158072	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	27732836	77158072	56693823	55	10219											
GATC	283459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120884359	120884359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GATC	NM_176818	exon1	c.C76T	p.P26S	GCGGATCCTCAGG	.	58	6	54	0	.	22	T	120884359	C	T	120884359	3	4	75	1	0	0	0	0	1	0	0	0	6262	855	30	3	78	3	GATC	12	120884359	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	43726287	120884359	12967536	56	10220											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	121426820	121426820	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HNF1A	NM_000545	exon2	c.C511T	p.R171X	AAGCAGCGAGAGG	.	81	30	81	0	.	1745	T	121426820	C	T	121426820	4	4	75	1	0	0	0	0	0	1	0	0	7251	760	27	1	517	1	HNF1A	12	121426820	Nonsense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	542461	121426820	12425075	57	10221											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431506	121431506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	HNF1A,NS,other,0	HNF1A	NM_000545	exon3	c.A710G	p.N237S	AGTGCAATAGGTA	.	70	28	60	0	.	1745	G	121431506	A	G	121431506	3	3	75	1	0	0	0	0	1	0	0	0	7251	101	4	2	720	2	HNF1A	12	121431506	Missense_Mutation	SNP	A	TCGA-DD-A3A2-01A-11D-A20W-10	4686	121431506	12420389	58	10222											
TCTN2	79867	broad.mit.edu;bcgsc.ca	37	12	124184293	124184293	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TCTN2	NM_024809	exon14	c.T1548C	p.T516T	AGCGACTCACGTT	.	105	7	109	0	.	91	C	124184293	T	C	124184293	2	2	75	1	0	0	0	0	0	0	0	1	15720	1538	54	2		2	TCTN2	12	124184293	Silent	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	2752787	124184293	9667602	59	10223											
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	113898777	113898777	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CUL4A	NM_001008895	exon12	c.G1282T	p.E428X	GACGAGGAGCTGG	.	243	97	201	0	.	651	T	113898777	G	T	113898777	4	4	75	1	0	0	0	0	0	1	0	0	4057	1175	41	3	1328	3	CUL4A	13	113898777	Nonsense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		113898777	1271101	60	10224											
BAZ1A	11177	broad.mit.edu;bcgsc.ca	37	14	35231375	35231375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BAZ1A	NM_013448	exon24	c.A3831C	p.K1277N	GCTAAGTTTCCCT	.	211	11	181	1	.	291	G	35231375	T	G	35231375	3	3	75	1	0	0	0	0	1	0	0	0	1329	1722	60	5	855	5	BAZ1A	14	35231375	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10		35231375	72118165	61	10225											
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49284998	49284999	+	In_Frame_Ins	INS	-	-	TGGGGGTGTGTCAAATGGAAGTTG	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SECISBP2L	NM_001193489	exon18	c.2749_2750insCAACTTCCATTTGACACACCCCCA	p.I917delinsQLPFDTPPI	TACCAATTGGGGG	.	157	14	190	0	.	136	TGGGGGTGTGTCAAATGGAAGTTG	49284999	-	TGGGGGTGTGTCAAATGGAAGTTG	49284998	7	5	75	1	0	1	1	0	0	0	0	0	14007	1493	52	0	560	0	SECISBP2L	15	49284998	In_Frame_Ins	INS	-	TCGA-DD-A3A2-01A-11D-A20W-10		49284998	53246394	62	10226											
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	64701814	64701814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TRIP4	NM_016213	exon7	c.T830C	p.I277T	TCAGTATTCGAAG	.	149	11	127	0	.	188	C	64701814	T	C	64701814	3	2	75	1	0	0	0	0	1	0	0	0	16555	1493	52	2	856	2	TRIP4	15	64701814	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	15416816	64701814	37829578	63	10227											
FURIN	5045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91423938	91423938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FURIN	NM_002569	exon14	c.C1574T	p.A525V	ACTCCGCAGATGG	.	114	41	137	0	.	1083	T	91423938	C	T	91423938	3	4	75	1	0	0	0	0	1	0	0	0	6099	710	25	3	1624	3	FURIN	15	91423938	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	26722124	91423938	11107454	64	10228											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1251935	1251935	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CACNA1H	NM_021098	exon9	c.G1485A	p.V495V	TGCTGTGCAAGGC	.	40	20	45	0	.	67	A	1251935	G	A	1251935	2	1	75	1	0	0	0	0	0	0	0	1	2545	1306	46	3		3	CACNA1H	16	1251935	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		1251935	89102818	65	10229											
ALG1	56052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5127503	5127503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ALG1	NM_019109	exon5	c.G597A	p.M199I	TGCTATGCGAGAA	.	99	35	104	0	.	92	A	5127503	G	A	5127503	3	1	75	1	0	0	0	0	1	0	0	0	510	1319	46	3	615	3	ALG1	16	5127503	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	3875568	5127503	85227250	66	10230											
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28877909	28877909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SH2B1	NM_001145796	exon2	c.C494T	p.S165L	GAGGCTCAGTCCG	.	57	22	51	0	.	92	T	28877909	C	T	28877909	3	4	75	1	0	0	0	0	1	0	0	0	14227	838	29	3	496	3	SH2B1	16	28877909	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	23750406	28877909	61476844	67	10231											
TMEM219	124446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29979380	29979380	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TMEM219	NM_001083613	exon4	c.C390T	p.A130A	CACAGCCAGGGTG	.	116	49	109	0	.	90	T	29979380	C	T	29979380	2	4	75	1	0	0	0	0	0	0	0	1	16139	581	21	3		3	TMEM219	16	29979380	Silent	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	1101471	29979380	60375373	68	10232											
SETD1A	9739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30976057	30976057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SETD1A	NM_014712	exon7	c.G994A	p.A332T	ACCACTGCAGCCA	.	160	54	154	1	.	93	A	30976057	G	A	30976057	3	1	75	1	0	0	0	0	1	0	0	0	14130	1319	46	3	1016	3	SETD1A	16	30976057	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	996677	30976057	59378696	69	10233											
FAM192A	80011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57206205	57206205	+	Silent	SNP	C	C	T	rs180702754		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM192A	NM_024946	exon4	c.G306A	p.K102K	TCGTTGCTTTTCT	.	191	52	211	0	C|0.999;T|0.001	90	T	57206205	C	T	57206205	2	4	75	1	0	0	0	0	0	0	0	1	5523	796	28	3		3	FAM192A	16	57206205	Silent	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	26230148	57206205	33148548	70	10234											
CWC25	54883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36977155	36977155	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_017748	exon2	c.A190T	p.K64X	CTTACTTGACGGC	.	146	51	122	0	.	.	A	36977155	T	A	36977155	4	1	75	1	0	0	0	0	0	1	0	0	4069	1826	63	4	1123	4	CWC25	17	36977155	Nonsense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10		36977155	44218055	71	10235											
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40831634	40831634	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CCR10	NM_016602	exon2	c.C1026T	p.R342R	GGGCCGGCGGGGG	.	43	20	31	0	.	522	A	40831634	G	A	40831634	2	1	75	1	0	0	0	0	0	0	0	1	2940	1190	42	3		3	CCR10	17	40831634	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	3854479	40831634	40363576	72	10236											
KPNB1	3837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45757446	45757446	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KPNB1	NM_002265	exon20	c.T2414T	p.I805I	ACATTGCTGGAGA	.	111	8	110	0	.	229	T	45757446	C	T	45757446	2	4	75	1	0	0	0	0	0	0	0	1	8435	797	28	3		3	KPNB1	17	45757446	Silent	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	4925812	45757446	35437764	73	10237											
ESCO1	114799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19144186	19144186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ESCO1	NM_052911	exon7	c.C1799A	p.T600N	TCATCAGTTTTCT	.	141	35	180	0	.	90	T	19144186	G	T	19144186	3	4	75	1	0	0	0	0	1	0	0	0	5248	1029	36	3	747	3	ESCO1	18	19144186	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		19144186	58933062	74	10238											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22807281	22807281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF521	NM_015461	exon4	c.C601A	p.P201T	TATATGGCTTGTT	.	258	90	271	0	.	275	T	22807281	G	T	22807281	3	4	75	1	0	0	0	0	1	0	0	0	17962	1203	42	3	3354	3	ZNF521	18	22807281	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	3663095	22807281	55269967	75	10239											
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288028	288028	+	Missense_Mutation	SNP	C	C	T	rs148329482		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PPAP2C	NM_177543	exon2	c.G259A	p.V87I	GGATGACGGTGGC	.	162	66	169	0	C|0.999;T|0.001	90	T	288028	C	T	288028	3	4	75	1	0	0	0	0	1	0	0	0	12292	536	19	1	690	1	PPAP2C	19	288028	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10		288028	58840955	76	10240											
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17115174	17115174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPAMD8	NM_015692	exon8	c.723delC	p.P241fs	GGACAAGGGGAAG	.	106	26	115	0	.	141	-	17115174	G	-	17115174	7	5	75	1	0	1	0	1	0	0	0	0	3795	987	35	0	5215	0	CPAMD8	19	17115174	Frame_Shift_Del	DEL	G	TCGA-DD-A3A2-01A-11D-A20W-10	16827146	17115174	42013809	77	10241	57	2									
CPAMD8	27151	hgsc.bcm.edu;bcgsc.ca	37	19	17115180	17115180	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPAMD8	NM_015692	exon8	c.C717T	p.S239S	GGGGAAGCTCATG	.	99	27	103	0	.	141	A	17115180	G	A	17115180	2	1	75	1	0	0	0	0	0	0	0	1	3795	962	34	3		3	CPAMD8	19	17115180	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	6	17115180	42013803	78	10242	57	2									
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41354235	41354235	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CYP2A6	NM_000762	exon4	c.C543G	p.V181V	GCTGATGACATTG	.	354	138	284	0	.	92	C	41354235	G	C	41354235	2	2	75	1	0	0	0	0	0	0	0	1	4162	1277	45	4		4	CYP2A6	19	41354235	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	24239055	41354235	17774748	79	10243											
ZNF611	81856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53208756	53208756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF611	NM_030972	exon7	c.G1552C	p.V518L	TGAAAACCTTTTC	.	138	60	143	0	.	91	G	53208756	C	G	53208756	3	3	75	1	0	0	0	0	1	0	0	0	18034	507	18	4	569	4	ZNF611	19	53208756	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	11854521	53208756	5920227	80	10244											
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2582881	2582881	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TMC2	NM_080751	exon11	c.C1347T	p.Y449Y	CATTTACTTTGTG	.	236	73	252	0	.	93	T	2582881	C	T	2582881	2	4	75	1	0	0	0	0	0	0	0	1	15982	576	20	3		3	TMC2	20	2582881	Silent	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10		2582881	60442639	81	10245											
RALY	22913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32664559	32664559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RALY	NM_016732	exon7	c.C596T	p.S199F	TCAAGTCCAATAT	.	88	38	91	0	.	91	T	32664559	C	T	32664559	3	4	75	1	0	0	0	0	1	0	0	0	13019	855	30	3	614	3	RALY	20	32664559	Missense_Mutation	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	30081678	32664559	30360961	82	10246											
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44531198	44531198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLTP	NM_006227	exon11	c.C988G	p.L330V	GGGCCAGGACCCG	.	164	64	203	0	.	91	C	44531198	G	C	44531198	3	2	75	1	0	0	0	0	1	0	0	0	12114	991	35	4	517	4	PLTP	20	44531198	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	11866639	44531198	18494322	83	10247											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61990961	61990961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CHRNA4	NM_000744	exon2	c.C167T	p.A56V	ATGTTGGCCACGG	.	109	37	110	0	.	91	A	61990961	G	A	61990961	3	1	75	1	0	0	0	0	1	0	0	0	3385	1203	42	3	1736	3	CHRNA4	20	61990961	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10	17459763	61990961	1034559	84	10248											
MICAL3	57553	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	18300440	18300440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MICAL3	NM_015241	exon26	c.C4987G	p.L1663V	GCTTCAGGGTGGG	.	55	19	58	0	.	68	C	18300440	G	C	18300440	3	2	75	1	0	0	0	0	1	0	0	0	9571	991	35	4	1049	4	MICAL3	22	18300440	Missense_Mutation	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		18300440	33004126	85	10249											
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33670561	33670561	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LARGE	NM_004737	exon16	c.A2123T	p.H708L	GGGGCATGAGGCA	.	149	53	146	0	.	92	A	33670561	T	A	33670561	3	1	75	1	0	0	0	0	1	0	0	0	8627	1464	51	4	151	4	LARGE	22	33670561	Missense_Mutation	SNP	T	TCGA-DD-A3A2-01A-11D-A20W-10	15370121	33670561	17634005	86	10250											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24744103	24744103	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	POLA1	NM_016937	exon13	c.G1305T	p.V435V	GCCAGTGGAAAAG	.	444	185	414	0	.	229	T	24744103	G	T	24744103	2	4	75	1	0	0	0	0	0	0	0	1	12187	1335	47	3		3	POLA1	23	24744103	Silent	SNP	G	TCGA-DD-A3A2-01A-11D-A20W-10		24744103	130526457	87	10251											
IDS	3423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148582537	148582537	+	Silent	SNP	C	C	T	rs201892132		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	IDS	NM_006123	exon4	c.G450A	p.P150P	GCTATACGGAGAA	.	99	41	95	0	.	130	T	148582537	C	T	148582537	2	4	75	1	0	0	0	0	0	0	0	1	7503	523	19	1		1	IDS	23	148582537	Silent	SNP	C	TCGA-DD-A3A2-01A-11D-A20W-10	123838434	148582537	6688023	88	10252											
PRDM2	7799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	14108628	14108628	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRDM2	NM_015866	exon8	c.G4338A	p.L1446L	CGACTTGAAAAAT	.	124	51	134	1	.	116	A	14108628	G	A	14108628	2	1	76	1	0	0	0	0	0	0	0	1	12458	1281	45	3		3	PRDM2	1	14108628	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10		14108628	235141993	1	10253											
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28818225	28818225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PHACTR4	NM_023923	exon11	c.G1972T	p.V658L	GAATATGTAGAGG	.	81	32	95	0	.	90	T	28818225	G	T	28818225	3	4	76	1	0	0	0	0	1	0	0	0	11812	1377	48	3	2034	3	PHACTR4	1	28818225	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	14709597	28818225	220432396	2	10254											
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45977016	45977016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRDX1	NM_181696	exon6	c.C585G	p.F195L	CTTGGAGAAATAT	.	78	28	95	0	.	514	C	45977016	G	C	45977016	3	2	76	1	0	0	0	0	1	0	0	0	12464	933	33	4	18	4	PRDX1	1	45977016	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	17158791	45977016	203273605	3	10255											
DNASE2B	58511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	84864291	84864291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DNASE2B	NM_021233	exon1	c.C44A	p.A15D	CCTTTGCTTTGCT	.	89	40	87	0	.	90	A	84864291	C	A	84864291	3	1	76	1	0	0	0	0	1	0	0	0	4665	797	28	3	46	3	DNASE2B	1	84864291	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	38887275	84864291	164386330	4	10256											
GNG5	2787	broad.mit.edu;mdanderson.org	37	1	84971732	84971732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GNG5	NM_005274	exon2	c.C43T	p.Q15X	GCTGTTGAACCAC	.	13	5	14	0	.	227	A	84971732	G	A	84971732	4	1	76	1	0	0	0	0	0	1	0	0	6530	1299	45	3	171	3	GNG5	1	84971732	Nonsense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	107441	84971732	164278889	5	10257											
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89575922	89575922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GBP2	NM_004120	exon9	c.G1390A	p.E464K	TGGACTCCAAATA	.	116	54	149	0	.	91	T	89575922	C	T	89575922	3	4	76	1	0	0	0	0	1	0	0	0	6274	864	30	3	397	3	GBP2	1	89575922	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	4604190	89575922	159674699	6	10258											
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91784735	91784735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HFM1	NM_001017975	exon25	c.G2712T	p.K904N	AAACTTCTTTTCT	.	106	46	118	0	.	112	A	91784735	C	A	91784735	3	1	76	1	0	0	0	0	1	0	0	0	7083	912	32	3	1655	3	HFM1	1	91784735	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	2208813	91784735	157465886	7	10259											
RUSC1	23623	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155296520	155296520	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	RUSC1	NM_001105203	exon8	c.C2011T	p.L671L	CACCACCTGCCCC	.	80	52	47	1	.	92	T	155296520	C	T	155296520	2	4	76	1	0	0	0	0	0	0	0	1	13750	680	24	3		3	RUSC1	1	155296520	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	63511785	155296520	93954101	8	10260											
ATF6	22926	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161823113	161823113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ATF6	NM_007348	exon12	c.G1533T	p.Q511H	TCTTCAGGTATGT	.	87	17	67	1	.	93	T	161823113	G	T	161823113	3	4	76	1	0	0	0	0	1	0	0	0	1084	1014	35	3	1579	3	ATF6	1	161823113	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	6526593	161823113	87427508	9	10261											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179965731	179965731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon6	c.G439A	p.E147K	CATCTGGAATCAA	.	117	82	86	0	.	26	A	179965731	G	A	179965731	3	1	76	1	0	0	0	0	1	0	0	0	3254	1175	41	3	457	3	CEP350	1	179965731	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	18142618	179965731	69284890	10	10262											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180003175	180003175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon16	c.G3904A	p.A1302T	AACCCGGCAGCCA	.	249	160	144	0	.	26	A	180003175	G	A	180003175	3	1	76	1	0	0	0	0	1	0	0	0	3254	1203	42	3	3962	3	CEP350	1	180003175	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	37444	180003175	69247446	11	10263											
C1orf21	81563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184446676	184446676	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C1orf21	NM_030806	exon2	c.T33A	p.T11T	TGCCACTGTTCAA	.	92	48	56	0	.	90	A	184446676	T	A	184446676	2	1	76	1	0	0	0	0	0	0	0	1	2028	1567	55	4		4	C1orf21	1	184446676	Silent	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10	4443501	184446676	64803945	12	10264											
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209936844	209936844	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRAF3IP3	NM_025228	exon8	c.T614A	p.L205Q	AGGCCCTACAAAG	.	200	40	132	0	.	291	A	209936844	T	A	209936844	3	1	76	1	0	0	0	0	1	0	0	0	16439	1522	53	4	636	4	TRAF3IP3	1	209936844	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10	25490168	209936844	39313777	13	10265											
FABP1	2168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88424070	88424072	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FABP1	NM_001443	exon3	c.274_276del	p.92_92del	AGTTGTCACCAGT	.	44	16	80	0	.	90	-	88424072	CAC	-	88424070	7	5	76	1	0	1	0	1	0	0	0	0	5355	813	29	0	115	0	FABP1	2	88424070	In_Frame_Del	DEL	CAC	TCGA-DD-A3A3-01A-11D-A22F-10		88424070	154775303	14	10266											
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120438937	120438937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TMEM177	NM_030577	exon2	c.G508T	p.A170S	GTGCACGCCCTGC	.	53	15	58	0	.	91	T	120438937	G	T	120438937	3	4	76	1	0	0	0	0	1	0	0	0	16091	1087	38	1	510	1	TMEM177	2	120438937	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	32014867	120438937	122760436	15	10267											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160901606	160901606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PLA2R1	NM_001195641	exon2	c.G172C	p.V58L	TCAGAACCGATTT	.	127	44	126	0	.	93	G	160901606	C	G	160901606	3	3	76	1	0	0	0	0	1	0	0	0	12010	507	18	4	4343	4	PLA2R1	2	160901606	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	40462669	160901606	82297767	16	10268											
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210517999	210517999	+	Silent	SNP	C	C	A	rs149857613	byfrequency;alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MAP2	NM_001039538	exon5	c.C105A	p.G35G	TCAAGGCGGAGCA	.	121	59	149	0	C|1.000;T|0.000	591	A	210517999	C	A	210517999	2	1	76	1	0	0	0	0	0	0	0	1	9235	755	27	1		1	MAP2	2	210517999	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	49616393	210517999	32681374	17	10269											
DOCK10	55619	broad.mit.edu;bcgsc.ca	37	2	225670909	225670909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DOCK10	NM_014689	exon34	c.A3748G	p.T1250A	TAGCTGTCTGGCT	.	91	6	142	0	.	92	C	225670909	T	C	225670909	3	2	76	1	0	0	0	0	1	0	0	0	4685	1667	58	2	2904	2	DOCK10	2	225670909	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10	15152910	225670909	17528464	18	10270											
POLQ	10721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121200622	121200622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	POLQ	NM_199420	exon19	c.C6008T	p.P2003L	AGAGTCGGCTCCT	.	112	42	130	1	.	664	A	121200622	G	A	121200622	3	1	76	1	0	0	0	0	1	0	0	0	12208	1116	39	1	1812	1	POLQ	3	121200622	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10		121200622	76821808	19	10271											
DGKG	1608	ucsc.edu;mdanderson.org	37	3	186006618	186006618	+	Missense_Mutation	SNP	C	C	A	rs1004588	byfrequency;alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DGKG	NM_001346	exon6	c.C425T	p.T142I	AGGGGGGTCGCAG	.	94	34	132	0	C|0.491;G|0.509	714	A	186006618	C	A	186006618	3	1	76	1	0	0	0	0	1	0	0	0	4469	1261	44	3	2030	3	DGKG	3	186006618	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	64805996	186006618	12015812	20	10272											
HES1	3280	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	193855598	193855598	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HES1	NM_005524	exon4	c.T419G	p.L140R	GGCTGCTCGGCCA	.	28	15	49	0	.	659	G	193855598	T	G	193855598	3	3	76	1	0	0	0	0	1	0	0	0	7065	1551	54	5	433	5	HES1	3	193855598	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10	7848980	193855598	4166832	21	10273											
MUC20	200958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195452957	195452957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_152673	exon3	c.A970T	p.T324S	GATGCCACGGTTG	.	302	64	353	0	.	.	T	195452957	A	T	195452957	3	4	76	1	0	0	0	0	1	0	0	0	9976	159	6	4	980	4	MUC20	3	195452957	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10	1597359	195452957	2569473	22	10274											
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25664369	25664369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SLC34A2	NM_006424	exon3	c.C155T	p.P52L	TTCTGCCGTCCTA	.	144	47	168	0	.	95	T	25664369	C	T	25664369	3	4	76	1	0	0	0	0	1	0	0	0	14568	652	23	1	161	1	SLC34A2	4	25664369	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10		25664369	165489907	23	10275											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55976858	55976858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	KDR,brain,glioma,+1	KDR	NM_002253	exon8	c.G1054T	p.A352S	ACTTCGCAGGGAT	.	184	74	230	0	.	2298	A	55976858	C	A	55976858	3	1	76	1	0	0	0	0	1	0	0	0	8139	710	25	3	3108	3	KDR	4	55976858	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	30312489	55976858	135177418	24	10276											
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123900511	123900511	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SPATA5	NM_145207	exon10	c.C1839T	p.A613A	CAGTGCCATGAGG	.	111	38	135	0	.	90	T	123900511	C	T	123900511	2	4	76	1	0	0	0	0	0	0	0	1	15010	581	21	3		3	SPATA5	4	123900511	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	67923653	123900511	67253765	25	10277											
INPP4B	8821	broad.mit.edu;bcgsc.ca	37	4	143044547	143044547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	INPP4B	NM_003866	exon21	c.T1915C	p.F639L	TGATAAAACCACA	.	54	4	110	0	.	228	G	143044547	A	G	143044547	3	3	76	1	0	0	0	0	1	0	0	0	7753	14	1	2	887	2	INPP4B	4	143044547	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10	19144036	143044547	48109729	26	10278											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36976173	36976173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NIPBL	NM_015384	exon9	c.T1164A	p.N388K	AGAAAATGATATT	.	226	121	162	0	.	293	A	36976173	T	A	36976173	3	1	76	1	0	0	0	0	1	0	0	0	10428	1461	51	4	1194	4	NIPBL	5	36976173	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10		36976173	143939087	27	10279											
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	64314004	64314005	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CWC27	NM_005869	exon14	c.1275_1276insTT	p.Q425fs	ACTTCAGTTTGAG	.	262	145	202	0	.	90	TT	64314005	-	TT	64314004	7	5	76	1	0	1	1	0	0	0	0	0	4070	1020	36	0	1329	0	CWC27	5	64314004	Frame_Shift_Ins	INS	-	TCGA-DD-A3A3-01A-11D-A22F-10	27337831	64314004	116601256	28	10280											
DMXL1	1657	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118484603	118484603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DMXL1	NM_005509	exon18	c.A3081G	p.P1027P	ATGGCCATTACTT	.	257	68	220	1	.	92	G	118484603	A	G	118484603	2	3	76	1	0	0	0	0	0	0	0	1	4594	204	8	2		2	DMXL1	5	118484603	Silent	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10	54170599	118484603	62430657	29	10281											
PCDHGA2	56113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140720406	140720406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PCDHGA2	NM_018915	exon1	c.C1868T	p.T623M	TGCACACGGGCGA	.	56	22	27	0	.	71	T	140720406	C	T	140720406	3	4	76	1	0	0	0	0	1	0	0	0	11554	536	19	1	1870	1	PCDHGA2	5	140720406	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	22235803	140720406	40194854	30	10282											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38747842	38747842	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DNAH8	NM_001206927	exon15	c.2139+1G>T	.	AAGAAGGCAAGTG	.	83	21	80	0	.	615	T	38747842	G	T	38747842	5	4	76	1	0	0	0	0	0	0	1	0	4607	1217	42	3	1531	3	DNAH8	6	38747842	Splice_Site	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10		38747842	132367225	31	10283											
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154412549	154412549	+	Missense_Mutation	SNP	G	G	A	rs199984546		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OPRM1	NM_001145279	exon5	c.G1385A	p.R462H	GAATTCGTCAGAA	.	76	22	104	0	.	69	A	154412549	G	A	154412549	3	1	76	1	0	0	0	0	1	0	0	0	10887	1145	40	1	1450	1	OPRM1	6	154412549	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	115664707	154412549	16702518	32	10284											
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24690139	24690139	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MPP6	NM_016447	exon6	c.A459G	p.V153V	TCTGGTAATTGCC	.	77	29	69	0	.	90	G	24690139	A	G	24690139	2	3	76	1	0	0	0	0	0	0	0	1	9738	349	13	2		2	MPP6	7	24690139	Silent	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10		24690139	134448524	33	10285											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92733944	92733944	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SAMD9	NM_001193307	exon2	c.C1467T	p.P489P	CCAGCTGGGTTGA	.	112	44	140	0	.	140	A	92733944	G	A	92733944	2	1	76	1	0	0	0	0	0	0	0	1	13826	1335	47	3		3	SAMD9	7	92733944	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	68043805	92733944	66404719	34	10286											
STK3	6788	hgsc.bcm.edu;mdanderson.org	37	8	99719383	99719383	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	STK3	NM_001256312	exon7	c.C592T	p.Q198X	TTAACTGACCAGC	.	228	16	88	0	.	978	A	99719383	G	A	99719383	4	1	76	1	0	0	0	0	0	1	0	0	15294	1299	45	3	995	3	STK3	8	99719383	Nonsense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10		99719383	46644639	35	10287											
COLEC10	10584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	120118098	120118103	+	In_Frame_Del	DEL	AACTAC	AACTAC	-	rs57284713	alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	AACTAC	AACTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	COLEC10	NM_006438	exon6	c.502_507del	p.168_169del	GAGAAGAACTACA	.	256	17	84	0	.	229	-	120118103	AACTAC	-	120118098	7	5	76	1	0	1	0	1	0	0	0	0	3710	246	9	0	524	0	COLEC10	8	120118098	In_Frame_Del	DEL	AACTAC	TCGA-DD-A3A3-01A-11D-A22F-10	20398715	120118098	26245924	36	10288											
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134232984	134232984	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	WISP1	NM_003882	exon3	c.G510A	p.P170P	CCACCCGCGGCGC	.	102	21	22	0	.	610	A	134232984	G	A	134232984	2	1	76	1	0	0	0	0	0	0	0	1	17369	1074	38	1		1	WISP1	8	134232984	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	14114886	134232984	12131038	37	10289											
PRUNE2	158471	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79323927	79323927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRUNE2	NM_015225	exon8	c.A3263C	p.Y1088S	TCATTGTACAGTT	.	227	87	245	1	.	157	G	79323927	T	G	79323927	3	3	76	1	0	0	0	0	1	0	0	0	12641	1638	57	5	6051	5	PRUNE2	9	79323927	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10		79323927	61889504	38	10290											
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131566320	131566320	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TBC1D13	NM_018201	exon9	c.G840T	p.S280S	TGACTCGCAGTGT	.	67	24	55	0	.	90	T	131566320	G	T	131566320	2	4	76	1	0	0	0	0	0	0	0	1	15599	1074	38	1		1	TBC1D13	9	131566320	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	52242393	131566320	9647111	39	10291											
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567215	75567215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NDST2	NM_003635	exon3	c.G932A	p.R311H	ATGTAGCGGTCAA	.	83	35	100	0	.	91	T	75567215	C	T	75567215	3	4	76	1	0	0	0	0	1	0	0	0	10256	768	27	1	1771	1	NDST2	10	75567215	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10		75567215	59967532	40	10292											
SORCS1	114815	broad.mit.edu;mdanderson.org	37	10	108339225	108339225	+	Silent	SNP	C	C	A	rs142773000	byfrequency	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SORCS1	NM_001206572	exon25	c.G3273T	p.L1091L	GTCCACCAGGGGG	.	32	11	47	1	C|1.000;A|0.000	153	A	108339225	C	A	108339225	2	1	76	1	0	0	0	0	0	0	0	1	14930	581	21	3		3	SORCS1	10	108339225	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	32772010	108339225	27195522	41	10293											
KRTAP5-4	387267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1642677	1642677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_001012709	exon1	c.C647A	p.S216Y	CAACTAGACTGGG	.	64	18	82	0	.	.	T	1642677	G	T	1642677	3	4	76	1	0	0	0	0	1	0	0	0	8563	942	33	3	43	3	KRTAP5-4	11	1642677	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10		1642677	133363839	42	10294											
TRIM21	6737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4411479	4411479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRIM21	NM_003141	exon2	c.G161A	p.C54Y	TGCCGGCACACAG	.	62	19	76	0	.	229	T	4411479	C	T	4411479	3	4	76	1	0	0	0	0	1	0	0	0	16492	710	25	3	1290	3	TRIM21	11	4411479	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	2768802	4411479	130595037	43	10295											
HBG1	3047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	5269688	5269688	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HBG1	NM_000559	exon3	c.G345A	p.L115L	GATTGCCAAAACG	.	214	66	248	0	.	90	T	5269688	C	T	5269688	2	4	76	1	0	0	0	0	0	0	0	1	6982	593	21	3		3	HBG1	11	5269688	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	858209	5269688	129736828	44	10296											
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	32635624	32635625	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CCDC73	NM_001008391	exon16	c.2240_2241insA	p.E747fs	CACATAGTTTTTC	.	81	20	113	0	.	91	T	32635625	-	T	32635624	7	5	76	1	0	1	1	0	0	0	0	0	2846	1029	36	0	1011	0	CCDC73	11	32635624	Frame_Shift_Ins	INS	-	TCGA-DD-A3A3-01A-11D-A22F-10	27365936	32635624	102370892	45	10297											
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65828070	65828070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SF3B2	NM_006842	exon14	c.G1647T	p.M549I	GACCATGAAGTCA	.	50	24	66	0	.	92	T	65828070	G	T	65828070	3	4	76	1	0	0	0	0	1	0	0	0	14151	1290	45	3	1701	3	SF3B2	11	65828070	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	33192446	65828070	69178446	46	10298											
PHLDB1	23187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118513074	118513074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PHLDB1	NM_001144758	exon13	c.C2839A	p.P947T	TCTTCTCCCCCGC	.	26	7	22	0	.	90	A	118513074	C	A	118513074	3	1	76	1	0	0	0	0	1	0	0	0	11851	855	30	3	2885	3	PHLDB1	11	118513074	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	52685004	118513074	16493442	47	10299											
CAPZA3	93661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18892064	18892064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CAPZA3	NM_033328	exon1	c.A862G	p.I288V	TATGTCATTTATT	.	86	36	99	1	.	91	G	18892064	A	G	18892064	3	3	76	1	0	0	0	0	1	0	0	0	2642	217	8	2	864	2	CAPZA3	12	18892064	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10		18892064	114959831	48	10300											
BEST3	144453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70049144	70049144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	BEST3	NM_032735	exon10	c.1550delG	p.G517fs	TGGTAGCCCCCTG	.	61	28	68	0	.	248	-	70049144	C	-	70049144	7	5	76	1	0	1	0	1	0	0	0	0	1406	739	26	0	460	0	BEST3	12	70049144	Frame_Shift_Del	DEL	C	TCGA-DD-A3A3-01A-11D-A22F-10	51157080	70049144	63802751	49	10301											
CORO1C	23603	broad.mit.edu;bcgsc.ca	37	12	109095009	109095009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CORO1C	NM_014325	exon2	c.T86C	p.V29A	CGAGAAACCCGGA	.	102	5	112	0	.	228	G	109095009	A	G	109095009	3	3	76	1	0	0	0	0	1	0	0	0	3755	43	2	2	1378	2	CORO1C	12	109095009	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10	39045865	109095009	24756886	50	10302											
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	38159033	38159033	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	POSTN	NM_006475	exon8	c.928delC	p.Q310fs	AACACTGGAGAGT	.	120	41	145	0	.	516	-	38159033	G	-	38159033	7	5	76	1	0	1	0	1	0	0	0	0	12259	1357	47	0	1646	0	POSTN	13	38159033	Frame_Shift_Del	DEL	G	TCGA-DD-A3A3-01A-11D-A22F-10		38159033	77010845	51	10303											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39338482	39338482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FREM2	NM_207361	exon3	c.G5305C	p.A1769P	AATTGGGCATGGA	.	136	45	169	0	.	100	C	39338482	G	C	39338482	3	2	76	1	0	0	0	0	1	0	0	0	6045	1203	42	4	5315	4	FREM2	13	39338482	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	1179449	39338482	75831396	52	10304											
PACS2	23241	broad.mit.edu;bcgsc.ca	37	14	105821449	105821449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PACS2	NM_001100913	exon4	c.C358T	p.R120C	AGAAAGCGCTACA	.	65	5	62	0	.	69	T	105821449	C	T	105821449	3	4	76	1	0	0	0	0	1	0	0	0	11373	768	27	1	372	1	PACS2	14	105821449	Missense_Mutation	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10		105821449	1528091	53	10305											
DOC2A	8448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30018527	30018527	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DOC2A	NM_003586	exon6	c.G621A	p.K207K	AAAATGCTTCTTC	.	49	23	44	0	.	92	T	30018527	C	T	30018527	2	4	76	1	0	0	0	0	0	0	0	1	4683	796	28	3		3	DOC2A	16	30018527	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10		30018527	60336226	54	10306											
DHODH	1723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72058091	72058091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DHODH	NM_001361	exon9	c.G1181C	p.R394P	ATCATCGGAGGTG	.	162	53	185	0	.	227	C	72058091	G	C	72058091	3	2	76	1	0	0	0	0	1	0	0	0	4484	1116	39	4	1215	4	DHODH	16	72058091	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	42039564	72058091	18296662	55	10307											
ABR	29	ucsc.edu;bcgsc.ca	37	17	915220	915220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ABR	NM_021962	exon19	c.A1967G	p.E656G	GAGCGCTCCCGCC	.	23	4	29	0	.	91	C	915220	T	C	915220	3	2	76	1	0	0	0	0	1	0	0	0	99	1551	54	2	632	2	ABR	17	915220	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10		915220	80279990	56	10308											
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3493227	3493227	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRPV1	NM_018727	exon6	c.G918T	p.V306V	GCTCGTCACAAAC	.	61	36	90	0	.	23	A	3493227	C	A	3493227	2	1	76	1	0	0	0	0	0	0	0	1	16592	813	29	3		3	TRPV1	17	3493227	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	2578007	3493227	77701983	57	10309			1	7		2	2	13	N	G_C	2.75219e-05
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3493239	3493239	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRPV1	NM_018727	exon6	c.C906T	p.N302N	CTTCGTGTTGTCG	.	48	29	81	0	.	23	A	3493239	G	A	3493239	2	1	76	1	0	0	0	0	0	0	0	1	16592	1368	48	3		3	TRPV1	17	3493239	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	12	3493239	77701971	58	10310			1	7		2	2	13	N	G_C	2.75219e-05
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29541512	29541512	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NF1	NM_001128147	exon13	c.1436delA	p.E479fs	TTAAAGAAAAACC	.	202	103	183	0	.	3353	-	29541512	A	-	29541512	7	5	76	1	0	1	0	1	0	0	0	0	10356	246	9	0	1486	0	NF1	17	29541512	Frame_Shift_Del	DEL	A	TCGA-DD-A3A3-01A-11D-A22F-10	26048273	29541512	51653698	59	10311											
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40481576	40481576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	STAT3	NM_003150	exon13	c.A1229G	p.H410R	ACCAAGTGTTTGA	.	150	79	141	0	.	1271	C	40481576	T	C	40481576	3	2	76	1	0	0	0	0	1	0	0	0	15265	1696	59	2	1131	2	STAT3	17	40481576	Missense_Mutation	SNP	T	TCGA-DD-A3A3-01A-11D-A22F-10	10940064	40481576	40713634	60	10312											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42744727	42744728	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C17orf104	NM_001145080	exon5	c.1448_1449insA	p.T483fs	TTCAAACAAAAAA	.	107	34	70	0	.	22	A	42744728	-	A	42744727	7	5	76	1	0	1	1	0	0	0	0	0	1851	478	17	0	1466	0	C17orf104	17	42744727	Frame_Shift_Ins	INS	-	TCGA-DD-A3A3-01A-11D-A22F-10	2263151	42744727	38450483	61	10313											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901390	51901390	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KIF2B	NM_032559	exon1	c.G996T	p.V332V	TCTGGTGGCACAG	.	109	30	90	0	.	98	T	51901390	G	T	51901390	2	4	76	1	0	0	0	0	0	0	0	1	8298	1335	47	3		3	KIF2B	17	51901390	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	9156663	51901390	29293820	62	10314											
DYNLL2	140735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56166589	56166589	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DYNLL2	NM_080677	exon3	c.C219T	p.F73F	GCACTTCATCTAT	.	127	27	119	0	.	90	T	56166589	C	T	56166589	2	4	76	1	0	0	0	0	0	0	0	1	4849	825	29	3		3	DYNLL2	17	56166589	Silent	SNP	C	TCGA-DD-A3A3-01A-11D-A22F-10	4265199	56166589	25028621	63	10315											
PRKACA	5566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14208204	14208204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRKACA	NM_002730	exon8	c.T734C	p.I245T	ATCTGGATGGGCT	.	61	22	65	0	.	978	G	14208204	A	G	14208204	3	3	76	1	0	0	0	0	1	0	0	0	12497	333	12	2	333	2	PRKACA	19	14208204	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10		14208204	44920779	64	10316											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15303036	15303036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NOTCH3	NM_000435	exon4	c.C414T	p.P138P	TCCATCGGGCCCC	.	34	15	54	0	.	855	A	15303036	G	A	15303036	2	1	76	1	0	0	0	0	0	0	0	1	10550	1103	39	1		1	NOTCH3	19	15303036	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	1094832	15303036	43825947	65	10317											
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38855544	38855544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CATSPERG	NM_021185	exon21	c.A2489T	p.D830V	TCAAGGATAAAAA	.	58	17	63	0	.	92	T	38855544	A	T	38855544	3	4	76	1	0	0	0	0	1	0	0	0	2692	333	12	4	2567	4	CATSPERG	19	38855544	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10	23552508	38855544	20273439	66	10318											
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57840110	57840110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF543	NM_213598	exon4	c.A1280C	p.E427A	GCAGTGAATGTGG	.	37	15	52	0	.	92	C	57840110	A	C	57840110	3	2	76	1	0	0	0	0	1	0	0	0	17973	246	9	5	1294	5	ZNF543	19	57840110	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10	18984566	57840110	1288873	67	10319											
IL17RA	23765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17577966	17577966	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	IL17RA	NM_014339	exon2	c.G153A	p.T51T	CTGCACGGTCAAG	.	191	70	216	0	.	92	A	17577966	G	A	17577966	2	1	76	1	0	0	0	0	0	0	0	1	7639	1103	39	1		1	IL17RA	22	17577966	Silent	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10		17577966	33726600	68	10320											
OFD1	8481	ucsc.edu;bcgsc.ca	37	X	13779284	13779284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OFD1	NM_003611	exon17	c.A2341G	p.S781G	AGGCACAGCCTCT	.	37	4	40	0	.	108	G	13779284	A	G	13779284	3	3	76	1	0	0	0	0	1	0	0	0	10838	188	7	2	2407	2	OFD1	23	13779284	Missense_Mutation	SNP	A	TCGA-DD-A3A3-01A-11D-A22F-10		13779284	141491276	69	10321											
SRPX	8406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	38020249	38020249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SRPX	NM_001170752	exon6	c.C712T	p.Q238X	TGTACTGGATCTT	.	44	30	46	0	.	130	A	38020249	G	A	38020249	4	1	76	1	0	0	0	0	0	1	0	0	15163	1357	47	3	702	3	SRPX	23	38020249	Nonsense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	24240965	38020249	117250311	70	10322											
ELF4	2000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129200820	129200820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ELF4	NM_001421	exon9	c.C1868A	p.S623Y	AGCAGGGACCCTG	.	67	47	78	0	.	659	T	129200820	G	T	129200820	3	4	76	1	0	0	0	0	1	0	0	0	5056	1174	41	3	127	3	ELF4	23	129200820	Missense_Mutation	SNP	G	TCGA-DD-A3A3-01A-11D-A22F-10	91180571	129200820	26069740	71	10323											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34667861	34667861	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C1orf94	NM_032884	exon4	c.876+1G>T	.	TATCAGGTCAGTG	.	77	27	103	0	.	90	T	34667861	G	T	34667861	5	4	77	1	0	0	0	0	0	0	1	0	2071	1275	44	3	1461	3	C1orf94	1	34667861	Splice_Site	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10		34667861	214582760	1	10324											
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170007568	170007568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIFAP3	NM_014970	exon5	c.A380T	p.D127V	ACTTCATCAATCT	.	150	46	135	0	.	91	A	170007568	T	A	170007568	3	1	77	1	0	0	0	0	1	0	0	0	8311	1435	50	4	2062	4	KIFAP3	1	170007568	Missense_Mutation	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	135339707	170007568	79243053	2	10325											
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	183885770	183885770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RGL1	NM_015149	exon17	c.G2044T	p.E682X	CAGAATGAAGACA	.	75	30	99	0	.	725	T	183885770	G	T	183885770	4	4	77	1	0	0	0	0	0	1	0	0	13276	1291	45	3	2106	3	RGL1	1	183885770	Nonsense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	13878202	183885770	65364851	3	10326											
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211640	249211640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PGBD2	NM_170725	exon3	c.G857T	p.R286M	TGCACAGGGGGAA	.	122	60	119	0	.	91	T	249211640	G	T	249211640	3	4	77	1	0	0	0	0	1	0	0	0	11781	1000	35	3	863	3	PGBD2	1	249211640	Missense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	65325870	249211640	38981	4	10327											
C2orf44	80304	broad.mit.edu;bcgsc.ca	37	2	24262242	24262242	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C2orf44	NM_025203	exon2	c.T123C	p.L41L	ACTGTGAAGCCGC	.	108	6	123	0	.	154	G	24262242	A	G	24262242	2	3	77	1	0	0	0	0	0	0	0	1	2168	233	9	2		2	C2orf44	2	24262242	Silent	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10		24262242	218937131	5	10328											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182350624	182350624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGA4	NM_000885	exon10	c.C1058T	p.A353V	TGAATGCAATGGA	.	127	46	129	0	.	230	T	182350624	C	T	182350624	3	4	77	1	0	0	0	0	1	0	0	0	7878	710	25	3	1096	3	ITGA4	2	182350624	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	158088382	182350624	60848749	6	10329											
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234171807	234171807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ATG16L1	NM_017974	exon3	c.C241G	p.Q81E	GACAATCAGCTAC	.	59	17	94	0	.	90	G	234171807	C	G	234171807	3	3	77	1	0	0	0	0	1	0	0	0	1091	827	29	4	251	4	ATG16L1	2	234171807	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	51821183	234171807	9027566	7	10330											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	76	33	113	0	.	24361	T	41268766	A	T	41268766	3	4	77	1	0	0	0	0	1	0	0	0	4016	14	1	4	1026	4	CTNNB1	3	41268766	Missense_Mutation	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10		41268766	156753664	8	10331											
MITF	4286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	70014270	70014270	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MITF	NM_198159	exon10	c.C1434A	p.I478I	AGACATCCTGATG	.	83	33	78	1	.	524	A	70014270	C	A	70014270	2	1	77	1	0	0	0	0	0	0	0	1	9596	845	30	3		3	MITF	3	70014270	Silent	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	28745504	70014270	128008160	9	10332											
EPHA6	285220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	96706703	96706703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EPHA6	NM_001080448	exon3	c.G980A	p.R327Q	AAGTACGGGGTTC	.	120	47	138	2	.	1561	A	96706703	G	A	96706703	3	1	77	1	0	0	0	0	1	0	0	0	5171	1116	39	1	990	1	EPHA6	3	96706703	Missense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	26692433	96706703	101315727	10	10333											
EIF2B5	8893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183855595	183855595	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EIF2B5	NM_003907	exon3	c.506+2T>A	.	CACAGGTCAGGAT	.	119	47	108	0	.	95	A	183855595	T	A	183855595	5	1	77	1	0	0	0	0	0	0	1	0	5004	1681	58	4	518	4	EIF2B5	3	183855595	Splice_Site	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	87148892	183855595	14166835	11	10334											
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60083199	60083199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ELOVL7	NM_001104558	exon2	c.G26T	p.R9M	ACAGTCCTCGATG	.	54	28	73	0	.	90	A	60083199	C	A	60083199	3	1	77	1	0	0	0	0	1	0	0	0	5079	681	24	3	847	3	ELOVL7	5	60083199	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10		60083199	120832061	12	10335											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79035108	79035108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CMYA5	NM_153610	exon2	c.C10520A	p.S3507Y	AAAAGTCCCAGAT	.	96	38	51	0	.	77	A	79035108	C	A	79035108	3	1	77	1	0	0	0	0	1	0	0	0	3590	855	30	3	10526	3	CMYA5	5	79035108	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	18951909	79035108	101880152	13	10336											
KIFC1	3833	broad.mit.edu;bcgsc.ca	37	6	33372736	33372736	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIFC1	NM_002263	exon7	c.A864G	p.E288E	GGAAGAACGTCTT	.	131	6	98	0	.	90	G	33372736	A	G	33372736	2	3	77	1	0	0	0	0	0	0	0	1	8312	40	2	2		2	KIFC1	6	33372736	Silent	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10		33372736	137742331	14	10337											
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20418810	20418810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGB8	NM_002214	exon4	c.A525T	p.R175S	ATCTAGAAAAATG	.	104	47	113	0	.	227	T	20418810	A	T	20418810	3	4	77	1	0	0	0	0	1	0	0	0	7901	243	9	4	539	4	ITGB8	7	20418810	Missense_Mutation	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10		20418810	138719853	15	10338											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21657266	21657266	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DNAH11	.	.	.	.	AGTCCGCGTCTGG	.	49	17	73	0	.	146	T	21657266	C	T	21657266	2	4	77	1	0	0	0	0	0	0	0	1	4599	755	27	1		1	DNAH11	7	21657266	Silent	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	1238456	21657266	137481397	16	10339											
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65435332	65435332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GUSB	NM_000181	exon9	c.A1413G	p.K471K	CAAGGATTTGGTG	.	34	13	31	0	.	90	C	65435332	T	C	65435332	2	2	77	1	0	0	0	0	0	0	0	1	6902	1490	52	2		2	GUSB	7	65435332	Silent	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	43778066	65435332	93703331	17	10340											
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149557718	149557718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF862	NM_001099220	exon7	c.G1469T	p.C490F	CAGCCTGCATAGA	.	79	22	75	0	.	69	T	149557718	G	T	149557718	3	4	77	1	0	0	0	0	1	0	0	0	18192	1319	46	3	1495	3	ZNF862	7	149557718	Missense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	84122386	149557718	9580945	18	10341	58	2									
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	149557719	149557719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF862	NM_001099220	exon7	c.C1470A	p.C490X	AGCCTGCATAGAA	.	78	22	76	0	.	69	A	149557719	C	A	149557719	4	1	77	1	0	0	0	0	0	1	0	0	18192	718	25	3	1496	3	ZNF862	7	149557719	Nonsense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	1	149557719	9580944	19	10342	58	2									
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2876120	2876120	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CSMD1	NM_033225	exon52	c.G7908A	p.T2636T	TGTCAACGTTCCA	.	71	25	76	0	.	86	T	2876120	C	T	2876120	2	4	77	1	0	0	0	0	0	0	0	1	3944	523	19	1		1	CSMD1	8	2876120	Silent	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10		2876120	143487902	20	10343											
C8orf86	389649	broad.mit.edu;bcgsc.ca	37	8	38370074	38370074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C8orf86	NM_207412	exon3	c.T503C	p.L168P	AAGCAGAGAGGAC	.	89	5	82	0	.	90	G	38370074	A	G	38370074	3	3	77	1	0	0	0	0	1	0	0	0	2442	304	11	2	172	2	C8orf86	8	38370074	Missense_Mutation	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10	35493954	38370074	107993948	21	10344											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52384855	52384855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PXDNL	NM_144651	exon8	c.G704A	p.R235Q	GTAATTCGGGGGC	.	80	30	72	0	.	70	T	52384855	C	T	52384855	3	4	77	1	0	0	0	0	1	0	0	0	12848	884	31	1	3751	1	PXDNL	8	52384855	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	14014781	52384855	93979167	22	10345											
CA3	761	broad.mit.edu;bcgsc.ca	37	8	86360370	86360370	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CA3	NM_005181	exon7	c.T771C	p.A257A	GAGAGCTTCCTTC	.	77	5	72	0	.	514	C	86360370	T	C	86360370	2	2	77	1	0	0	0	0	0	0	0	1	2517	1596	56	2		2	CA3	8	86360370	Silent	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	33975515	86360370	60003652	23	10346											
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101054142	101054142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RGS22	NM_015668	exon12	c.C1826T	p.S609L	TACTTTGACCTAA	.	73	26	80	0	.	140	A	101054142	G	A	101054142	3	1	77	1	0	0	0	0	1	0	0	0	13305	1294	45	3	2032	3	RGS22	8	101054142	Missense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	14693772	101054142	45309880	24	10347											
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15506558	15506558	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PSIP1	NM_001128217	exon4	c.149+1G>T	.	GACTTACGTCTCA	.	58	14	47	0	.	658	A	15506558	C	A	15506558	5	1	77	1	0	0	0	0	0	0	1	0	12663	550	19	1	1527	1	PSIP1	9	15506558	Splice_Site	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10		15506558	125706873	25	10348											
H2AFY2	55506	hgsc.bcm.edu;bcgsc.ca	37	10	71835423	71835423	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	H2AFY2	NM_018649	exon2	c.9delC	p.G3fs	GTCGGGCCGGAGT	.	90	22	119	0	.	91	-	71835423	C	-	71835423	7	5	77	1	0	1	0	1	0	0	0	0	6930	726	26	0	11	0	H2AFY2	10	71835423	Frame_Shift_Del	DEL	C	TCGA-DD-A3A4-01A-11D-A22F-10		71835423	63699324	26	10349											
HPS1	3257	ucsc.edu;bcgsc.ca	37	10	100183612	100183612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HPS1	NM_000195	exon15	c.A1430G	p.Q477R	CAGAGCTGCCGCT	.	40	4	63	0	.	91	C	100183612	T	C	100183612	3	2	77	1	0	0	0	0	1	0	0	0	7339	1580	55	2	696	2	HPS1	10	100183612	Missense_Mutation	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	28348189	100183612	35351135	27	10350											
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	113913361	113913364	+	Frame_Shift_Del	DEL	GAGG	GAGG	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	GAGG	GAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GPAM	NM_020918	exon22	c.2431_2434del	p.811_812del	TGCATTGAGGTAG	.	59	21	68	0	.	92	-	113913364	GAGG	-	113913361	7	5	77	1	0	1	0	1	0	0	0	0	6588	1299	45	0	56	0	GPAM	10	113913361	Frame_Shift_Del	DEL	GAGG	TCGA-DD-A3A4-01A-11D-A22F-10	13729749	113913361	21621386	28	10351											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	bycluster	TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	KRAS,NS,carcinoma,-1	KRAS	NM_004985	exon2	c.G38A	p.G13D	CCTACGCCACCAG	.	138	65	190	0	.	92875	T	25398281	C	T	25398281	3	4	77	1	0	0	0	0	1	0	0	0	8438	739	26	3	668	3	KRAS	12	25398281	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10		25398281	108453614	29	10352											
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58001190	58001190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DTX3	NM_178502	exon5	c.C544T	p.H182Y	TGCCGGCATTCAT	.	85	35	89	0	.	1083	T	58001190	C	T	58001190	3	4	77	1	0	0	0	0	1	0	0	0	4795	710	25	3	550	3	DTX3	12	58001190	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	32602909	58001190	75850705	30	10353											
CORO1C	23603	ucsc.edu;bcgsc.ca	37	12	109055931	109055931	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CORO1C	NM_014325	exon4	c.C322C	p.P108P	TCTGCCATACCTG	.	45	4	35	0	.	228	G	109055931	A	G	109055931	2	3	77	1	0	0	0	0	0	0	0	1	3755	217	8	2		2	CORO1C	12	109055931	Silent	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10	51054741	109055931	24795964	31	10354											
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111746258	111746258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CUX2	NM_015267	exon14	c.C1186A	p.L396I	TCACTGCTTATTG	.	88	41	103	0	.	140	A	111746258	C	A	111746258	3	1	77	1	0	0	0	0	1	0	0	0	4065	797	28	3	1240	3	CUX2	12	111746258	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	2690327	111746258	22105637	32	10355											
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117465265	117465265	+	Silent	SNP	G	G	A	rs188048498		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FBXW8	NM_153348	exon10	c.G1608A	p.T536T	CCAGACGGTAATG	.	37	18	30	0	G|0.999;A|0.001	229	A	117465265	G	A	117465265	2	1	77	1	0	0	0	0	0	0	0	1	5770	1103	39	1		1	FBXW8	12	117465265	Silent	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	5719007	117465265	16386630	33	10356											
MIPEP	4285	ucsc.edu;bcgsc.ca	37	13	24330758	24330758	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MIPEP	NM_005932	exon19	c.1971-1G>A	.	GCAGCCCTGGGGA	.	44	4	42	0	.	90	T	24330758	C	T	24330758	5	4	77	1	0	0	0	0	0	0	1	0	9592	695	24	3	179	3	MIPEP	13	24330758	Splice_Site	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10		24330758	90839120	34	10357											
TJP1	7082	broad.mit.edu;bcgsc.ca	37	15	30025368	30025368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TJP1	NM_175610	exon13	c.T1666C	p.S556P	GCCAAGAGCCCAG	.	121	5	114	0	.	95	G	30025368	A	G	30025368	3	3	77	1	0	0	0	0	1	0	0	0	15926	304	11	2	3644	2	TJP1	15	30025368	Missense_Mutation	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10		30025368	72506024	35	10358											
ZSCAN29	146050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43656356	43656356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZSCAN29	NM_152455	exon4	c.A1447C	p.T483P	GACAGGTCTCTGG	.	78	28	63	0	.	91	G	43656356	T	G	43656356	3	3	77	1	0	0	0	0	1	0	0	0	18233	1667	58	5	1119	5	ZSCAN29	15	43656356	Missense_Mutation	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	13630988	43656356	58875036	36	10359											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92988127	92988127	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ST8SIA2	NM_006011	exon5	c.C810T	p.Y270Y	TGCATACCCCTCG	.	41	19	43	0	.	90	T	92988127	C	T	92988127	2	4	77	1	0	0	0	0	0	0	0	1	15231	518	18	3		3	ST8SIA2	15	92988127	Silent	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	49331771	92988127	9543265	37	10360											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47630379	47630379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHKB	NM_000293	exon13	c.T1300A	p.C434S	AGCAACTGTGGCC	.	167	43	175	0	.	154	A	47630379	T	A	47630379	3	1	77	1	0	0	0	0	1	0	0	0	11845	1580	55	4	1409	4	PHKB	16	47630379	Missense_Mutation	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10		47630379	42724374	38	10361											
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32959873	32959873	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TMEM132E	NM_207313	exon7	c.G1363C	p.D455H	CTCTCAGATGCCC	.	64	14	43	0	.	68	C	32959873	G	C	32959873	3	2	77	1	0	0	0	0	1	0	0	0	16045	942	33	4	1389	4	TMEM132E	17	32959873	Missense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10		32959873	48235337	39	10362											
SP6	80320	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45925436	45925436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SP6	NM_001258248	exon2	c.G360T	p.W120C	GTCCCACCACGAG	.	20	8	37	0	.	91	A	45925436	C	A	45925436	3	1	77	1	0	0	0	0	1	0	0	0	14968	508	18	3	774	3	SP6	17	45925436	Missense_Mutation	SNP	C	TCGA-DD-A3A4-01A-11D-A22F-10	12965563	45925436	35269774	40	10363											
KIAA1468	57614	hgsc.bcm.edu;bcgsc.ca	37	18	59947916	59947948	+	In_Frame_Del	DEL	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIAA1468	NM_020854	exon24	c.3088_3114del	p.1030_1038del	GGCACTATTATGG	.	72	19	87	0	.	158	-	59947948	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	-	59947916	7	5	77	1	0	1	0	1	0	0	0	0	8236	449	16	0	3182	0	KIAA1468	18	59947916	In_Frame_Del	DEL	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	TCGA-DD-A3A4-01A-11D-A22F-10		59947916	18129332	41	10364											
EPHX3	79852	broad.mit.edu;bcgsc.ca	37	19	15338688	15338688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EPHX3	NM_001142886	exon7	c.A751G	p.T251A	TGCCTGTCTTGCG	.	86	4	78	0	.	90	C	15338688	T	C	15338688	3	2	77	1	0	0	0	0	1	0	0	0	5181	1667	58	2	339	2	EPHX3	19	15338688	Missense_Mutation	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10		15338688	43790295	42	10365											
GGN	199720	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38877740	38877740	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GGN	NM_152657	exon3	c.C162T	p.S54S	TGTGGCGCTGCCA	.	20	4	25	0	.	90	A	38877740	G	A	38877740	2	1	77	1	0	0	0	0	0	0	0	1	6358	1078	38	1		1	GGN	19	38877740	Silent	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10	23539052	38877740	20251243	43	10366											
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53612315	53612315	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF415	NM_018355	exon4	c.A983T	p.Y328F	CATGTGTAAGGTT	.	54	19	79	0	.	91	A	53612315	T	A	53612315	3	1	77	1	0	0	0	0	1	0	0	0	17889	1638	57	4	688	4	ZNF415	19	53612315	Missense_Mutation	SNP	T	TCGA-DD-A3A4-01A-11D-A22F-10	14734575	53612315	5516668	44	10367											
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42608580	42608580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TCF20	NM_181492	exon1	c.C2732G	p.P911R	CCACCAGGAAGAA	.	160	62	143	0	.	95	C	42608580	G	C	42608580	3	2	77	1	0	0	0	0	1	0	0	0	15687	1000	35	4	3188	4	TCF20	22	42608580	Missense_Mutation	SNP	G	TCGA-DD-A3A4-01A-11D-A22F-10		42608580	8695986	45	10368											
UXT	8409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47516683	47516683	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	UXT	NM_153477	exon4	c.T291C	p.D97D	TGAAGTATCTGGG	.	53	40	63	1	.	130	G	47516683	A	G	47516683	2	3	77	1	0	0	0	0	0	0	0	1	17107	446	16	2		2	UXT	23	47516683	Silent	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10		47516683	107753877	46	10369											
PHF8	23133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54044138	54044138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHF8	NM_001184896	exon5	c.T518G	p.L173R	GAGGGCAGCGTCA	.	57	42	63	0	.	133	C	54044138	A	C	54044138	3	2	77	1	0	0	0	0	1	0	0	0	11840	188	7	5	2906	5	PHF8	23	54044138	Missense_Mutation	SNP	A	TCGA-DD-A3A4-01A-11D-A22F-10	6527455	54044138	101226422	47	10370											
CALML6	163688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1847135	1847135	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CALML6	NM_138705	exon2	c.T39C	p.C13C	CTGGTGTCACCAC	.	43	4	48	0	.	90	C	1847135	T	C	1847135	2	2	78	1	0	0	0	0	0	0	0	1	2590	1673	58	2		2	CALML6	1	1847135	Silent	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10		1847135	247403486	1	10371											
PRDM2	7799	broad.mit.edu;mdanderson.org	37	1	14075915	14075915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PRDM2	NM_015866	exon6	c.A444G	p.I148M	TGAGATAGCAGCT	.	11	6	17	0	.	116	G	14075915	A	G	14075915	3	3	78	1	0	0	0	0	1	0	0	0	12458	410	15	2	462	2	PRDM2	1	14075915	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	12228780	14075915	235174706	2	10372											
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15986764	15986764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RSC1A1	NM_006511	exon1	c.C401A	p.S134Y	GTTTATCTGTCAC	.	134	65	128	0	.	91	A	15986764	C	A	15986764	3	1	78	1	0	0	0	0	1	0	0	0	13698	913	32	3	403	3	RSC1A1	1	15986764	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	1910849	15986764	233263857	3	10373											
FGGY	55277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60223627	60223627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	FGGY	NM_001113411	exon16	c.G1609T	p.V537F	AGCAAAGTTGGGA	.	71	27	61	0	.	69	T	60223627	G	T	60223627	3	4	78	1	0	0	0	0	1	0	0	0	5871	1029	36	3	1667	3	FGGY	1	60223627	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	44236863	60223627	189026994	4	10374											
GNG12	55970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68171260	68171260	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GNG12	NM_018841	exon5	c.94-1G>C	.	CGAAACCTGACAT	.	142	33	79	0	.	227	G	68171260	C	G	68171260	5	3	78	1	0	0	0	0	0	0	1	0	6525	695	24	4	129	4	GNG12	1	68171260	Splice_Site	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	7947633	68171260	181079361	5	10375											
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111147255	111147255	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	KCNA2	NM_001204269	exon3	c.C150A	p.T50T	GGCTAAGGTCTTT	.	102	46	105	0	.	91	T	111147255	G	T	111147255	2	4	78	1	0	0	0	0	0	0	0	1	8003	987	35	3		3	KCNA2	1	111147255	Silent	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	42975995	111147255	138103366	6	10376											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144912287	144912287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PDE4DIP	NM_001002811	exon11	c.C2477T	p.A826V	TTCTCTGCAGCAG	.	189	41	133	0	.	663	A	144912287	G	A	144912287	3	1	78	1	0	0	0	0	1	0	0	0	11643	1319	46	3	5182	3	PDE4DIP	1	144912287	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	33765032	144912287	104338334	7	10377											
C1orf43	25912	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154184948	154184948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C1orf43	NM_001098616	exon5	c.C493T	p.R165C	CATAGCGGGCTGT	.	95	4	88	0	.	90	A	154184948	G	A	154184948	3	1	78	1	0	0	0	0	1	0	0	0	2040	1116	39	1	280	1	C1orf43	1	154184948	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	9272661	154184948	95065673	8	10378											
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158812126	158812126	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	MNDA	NM_002432	exon2	c.T183C	p.C61C	TGCCTGTCTAGAC	.	153	66	137	0	.	94	C	158812126	T	C	158812126	2	2	78	1	0	0	0	0	0	0	0	1	9676	1673	58	2		2	MNDA	1	158812126	Silent	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	4627178	158812126	90438495	9	10379											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197446818	197446818	+	Missense_Mutation	SNP	A	A	G	rs111761880	bycluster;byfrequency	TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CRB1	NM_201253	exon12	c.A4030G	p.I1344V	TCCGACATTTTCA	.	145	68	144	0	A|0.999;G|0.001	161	G	197446818	A	G	197446818	3	3	78	1	0	0	0	0	1	0	0	0	3848	217	8	2	4076	2	CRB1	1	197446818	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	38634692	197446818	51803803	10	10380											
PIK3C2B	5287	hgsc.bcm.edu;bcgsc.ca	37	1	204394045	204394058	+	Frame_Shift_Del	DEL	GCTCTCGCAGGCGG	GCTCTCGCAGGCGG	-	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	GCTCTCGCAGGCGG	GCTCTCGCAGGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PIK3C2B	NM_002646	exon34	c.4827_4840del	p.1609_1614del	GGTCCAGCTCTCG	.	76	32	77	1	.	1310	-	204394058	GCTCTCGCAGGCGG	-	204394045	7	5	78	1	0	1	0	1	0	0	0	0	11910	962	34	0	68	0	PIK3C2B	1	204394045	Frame_Shift_Del	DEL	GCTCTCGCAGGCGG	TCGA-DD-A3A5-01A-11D-A22F-10	6947227	204394045	44856576	11	10381											
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237758830	237758830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RYR2	NM_001035	exon34	c.C4469T	p.A1490V	TATGTGCGGGTGA	.	130	61	126	1	.	158	T	237758830	C	T	237758830	3	4	78	1	0	0	0	0	1	0	0	0	13769	768	27	1	4603	1	RYR2	1	237758830	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	33364785	237758830	11491791	12	10382											
KCNS3	3790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	18113077	18113077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	KCNS3	NM_002252	exon3	c.G802T	p.A268S	TTCTATGCCACGT	.	153	60	140	0	.	94	T	18113077	G	T	18113077	3	4	78	1	0	0	0	0	1	0	0	0	8090	1319	46	3	804	3	KCNS3	2	18113077	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10		18113077	225086296	13	10383											
C2orf43	60526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20939926	20939926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C2orf43	NM_021925	exon5	c.A508G	p.M170V	CAGACATTCGTTC	.	169	106	110	0	.	90	C	20939926	T	C	20939926	3	2	78	1	0	0	0	0	1	0	0	0	2167	1493	52	2	481	2	C2orf43	2	20939926	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	2826849	20939926	222259447	14	10384											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21251347	21251347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	APOB	NM_000384	exon13	c.G1681T	p.A561S	GATAGGCAGCCAG	.	82	35	86	0	.	175	A	21251347	C	A	21251347	3	1	78	1	0	0	0	0	1	0	0	0	785	710	25	3	12078	3	APOB	2	21251347	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	311421	21251347	221948026	15	10385											
ALK	238	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29940532	29940532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ALK	NM_004304	exon2	c.G699T	p.M233I	AGAAGGCATGTTT	.	205	58	213	1	.	3833	A	29940532	C	A	29940532	3	1	78	1	0	0	0	0	1	0	0	0	525	710	25	3	4275	3	ALK	2	29940532	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	8689185	29940532	213258841	16	10386											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	39088480	39088480	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DHX57	NM_198963	exon5	c.C1072T	p.R358X	AAAATCGAATTTC	.	114	41	85	0	.	228	A	39088480	G	A	39088480	4	1	78	1	0	0	0	0	0	1	0	0	4513	1066	37	1	3168	1	DHX57	2	39088480	Nonsense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	9147948	39088480	204110893	17	10387											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54859819	54859819	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	SPTBN1	NM_003128	exon17	c.T3681C	p.A1227A	CAATGCTGTGGTG	.	141	54	96	0	.	140	C	54859819	T	C	54859819	2	2	78	1	0	0	0	0	0	0	0	1	15118	1567	55	2		2	SPTBN1	2	54859819	Silent	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	15771339	54859819	188339554	18	10388											
MRPL53	116540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74699318	74699318	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	MRPL53	NM_053050	exon3	c.C267G	p.A89A	GGCGAAGGCGGTG	.	90	37	87	0	.	90	C	74699318	G	C	74699318	2	2	78	1	0	0	0	0	0	0	0	1	9817	987	35	4		4	MRPL53	2	74699318	Silent	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	19839499	74699318	168500055	19	10389											
FAHD2A	51011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96076720	96076720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	FAHD2A	NM_016044	exon5	c.T631C	p.F211L	AAAACCTTCGACA	.	130	57	138	1	.	91	C	96076720	T	C	96076720	3	2	78	1	0	0	0	0	1	0	0	0	5373	1609	56	2	645	2	FAHD2A	2	96076720	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	21377402	96076720	147122653	20	10390											
RGPD8	727851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	113147588	113147588	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	.	NM_001164463	exon20	c.T2934G	p.T978T	TCCTGAAGTTGAT	.	668	43	594	0	.	.	C	113147588	A	C	113147588	2	2	78	1	0	0	0	0	0	0	0	1	13290	59	3	5		5	RGPD8	2	113147588	Silent	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	17070868	113147588	130051785	21	10391											
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218940360	218940360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RUFY4	NM_198483	exon9	c.C1145T	p.T382I	ACGCAACAAAGGA	.	149	76	77	0	.	46	T	218940360	C	T	218940360	3	4	78	1	0	0	0	0	1	0	0	0	13741	478	17	3	1171	3	RUFY4	2	218940360	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	105792772	218940360	24259013	22	10392											
NGLY1	55768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25805746	25805746	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	NGLY1	NM_018297	exon3	c.T303A	p.I101I	GTCACGAATTTTT	.	216	91	191	0	.	135	T	25805746	A	T	25805746	2	4	78	1	0	0	0	0	0	0	0	1	10398	242	9	4		4	NGLY1	3	25805746	Silent	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10		25805746	172216684	23	10393											
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57994556	57994556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	FLNB	NM_001457	exon1	c.C265G	p.R89G	CTGGACCGTGAGA	.	88	44	63	0	.	593	G	57994556	C	G	57994556	3	3	78	1	0	0	0	0	1	0	0	0	5934	652	23	4	267	4	FLNB	3	57994556	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	32188810	57994556	140027874	24	10394											
LRIG1	26018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	66502014	66502014	+	Missense_Mutation	SNP	C	C	T	rs149854215		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	LRIG1	NM_015541	exon3	c.G334A	p.A112T	AAGCAGCGCCCAG	.	59	27	56	0	C|0.999;T|0.000	230	T	66502014	C	T	66502014	3	4	78	1	0	0	0	0	1	0	0	0	8944	768	27	1	3015	1	LRIG1	3	66502014	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	8507458	66502014	131520416	25	10395											
IDUA	3425	broad.mit.edu;bcgsc.ca	37	4	995816	995816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IDUA	NM_000203	exon7	c.C839T	p.A280V	TCGTCGCGCAGCA	.	13	4	17	0	.	91	T	995816	C	T	995816	3	4	78	1	0	0	0	0	1	0	0	0	7504	768	27	1	865	1	IDUA	4	995816	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		995816	190158460	26	10396											
UBA6	55236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68539451	68539451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	UBA6	NM_018227	exon7	c.C510G	p.I170M	GTCATTGATCTTC	.	82	38	90	1	.	90	C	68539451	G	C	68539451	3	2	78	1	0	0	0	0	1	0	0	0	16829	1280	45	4	2756	4	UBA6	4	68539451	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	67543635	68539451	122614825	27	10397											
GRID2	2895	broad.mit.edu;bcgsc.ca	37	4	94436382	94436382	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GRID2	NM_001510	exon13	c.T2013C	p.L671L	GGACCTTTCCAAG	.	49	4	74	0	.	159	C	94436382	T	C	94436382	2	2	78	1	0	0	0	0	0	0	0	1	6772	1828	64	2		2	GRID2	4	94436382	Silent	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	25896931	94436382	96717894	28	10398											
HTR1A	3350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63256470	63256470	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	HTR1A	NM_000524	exon1	c.G1077A	p.L359L	GAAGGGCAGCCAG	.	108	53	97	1	.	94	T	63256470	C	T	63256470	2	4	78	1	0	0	0	0	0	0	0	1	7436	697	25	3		3	HTR1A	5	63256470	Silent	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		63256470	117658790	29	10399											
PCDHGA5	56110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140745170	140745170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PCDHGA5	NM_032054	exon1	c.A1273G	p.M425V	ACCGTCATGGACC	.	61	29	61	1	.	35	G	140745170	A	G	140745170	3	3	78	1	0	0	0	0	1	0	0	0	11557	217	8	2	1275	2	PCDHGA5	5	140745170	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	77488700	140745170	40170090	30	10400											
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20481646	20481646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	E2F3	NM_001949	exon3	c.G715A	p.V239I	AACAACGTCCAAT	.	93	33	84	0	.	414	A	20481646	G	A	20481646	3	1	78	1	0	0	0	0	1	0	0	0	4868	1145	40	1	725	1	E2F3	6	20481646	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10		20481646	150633421	31	10401											
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30918729	30918729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DPCR1	NM_080870	exon2	c.G2488A	p.A830T	AGGACAGCCAATG	.	105	33	91	0	.	90	A	30918729	G	A	30918729	3	1	78	1	0	0	0	0	1	0	0	0	4712	971	34	3	2494	3	DPCR1	6	30918729	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	10437083	30918729	140196338	32	10402											
BAI3	577	broad.mit.edu;bcgsc.ca	37	6	70034870	70034870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	BAI3	NM_001704	exon21	c.T2921A	p.I974N	GAAAAATTAGGAC	.	85	5	76	0	.	1148	A	70034870	T	A	70034870	3	1	78	1	0	0	0	0	1	0	0	0	1300	1493	52	4	2995	4	BAI3	6	70034870	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	39116141	70034870	101080197	33	10403											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11676308	11676308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	THSD7A	NM_015204	exon2	c.G471C	p.E157D	CGCTATCTCCCTC	.	101	34	82	0	.	71	G	11676308	C	G	11676308	3	3	78	1	0	0	0	0	1	0	0	0	15876	912	32	4	4606	4	THSD7A	7	11676308	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		11676308	147462355	34	10404											
KEL	3792	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142651031	142651031	+	Missense_Mutation	SNP	C	C	T	rs191311545		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	KEL	NM_000420	exon9	c.G937A	p.A313T	CGATGGCGGGGGC	.	53	29	36	0	C|0.999;T|0.001	93	T	142651031	C	T	142651031	3	4	78	1	0	0	0	0	1	0	0	0	8142	768	27	1	1305	1	KEL	7	142651031	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	130974723	142651031	16487632	35	10405											
ADARB2	105	broad.mit.edu;mdanderson.org	37	10	1779280	1779280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ADARB2	NM_018702	exon1	c.C65G	p.S22C	CTCTTGGACTTGC	.	11	5	14	0	.	153	C	1779280	G	C	1779280	3	2	78	1	0	0	0	0	1	0	0	0	283	1174	41	4	2194	4	ADARB2	10	1779280	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10		1779280	133755467	36	10406											
DNAJC1	64215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	22207780	22207780	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DNAJC1	NM_022365	exon6	c.G657A	p.W219X	ATCATGCCACTGT	.	66	30	49	0	.	226	T	22207780	C	T	22207780	4	4	78	1	0	0	0	0	0	1	0	0	4628	740	26	3	1035	3	DNAJC1	10	22207780	Nonsense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	20428500	22207780	113326967	37	10407											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124390621	124390621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DMBT1	NM_007329	exon46	c.G5783C	p.G1928A	AGCTAGGGTGTGG	.	124	35	136	0	.	494	C	124390621	G	C	124390621	3	2	78	1	0	0	0	0	1	0	0	0	4577	1232	43	4	5965	4	DMBT1	10	124390621	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	102182841	124390621	11144126	38	10408											
STIM1	6786	broad.mit.edu;bcgsc.ca	37	11	4091372	4091372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	STIM1	NM_003156	exon6	c.A730G	p.M244V	AAGAAGATGATGA	.	122	5	116	0	.	91	G	4091372	A	G	4091372	3	3	78	1	0	0	0	0	1	0	0	0	15282	333	12	2	752	2	STIM1	11	4091372	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10		4091372	130915144	39	10409											
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4674237	4674237	+	Missense_Mutation	SNP	C	C	T	rs137885627		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	OR51E1	NM_152430	exon2	c.C481T	p.P161S	ATGGCACCCCTTC	.	70	29	96	0	C|0.999;T|0.000	114	T	4674237	C	T	4674237	3	4	78	1	0	0	0	0	1	0	0	0	11094	507	18	3	483	3	OR51E1	11	4674237	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	582865	4674237	130332279	40	10410											
OR56B4	196335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6129479	6129479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	OR56B4	NM_001005181	exon1	c.G471T	p.R157S	GCTCAGGAATGGC	.	110	47	81	0	.	68	T	6129479	G	T	6129479	3	4	78	1	0	0	0	0	1	0	0	0	11138	1165	41	3	473	3	OR56B4	11	6129479	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	1455242	6129479	128877037	41	10411											
DEPDC7	91614	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	33037511	33037511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DEPDC7	NM_001077242	exon1	c.G10A	p.V4M	GCCACCGTGCAGG	.	58	20	97	0	.	92	A	33037511	G	A	33037511	3	1	78	1	0	0	0	0	1	0	0	0	4444	1145	40	1	12	1	DEPDC7	11	33037511	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	26908032	33037511	101969005	42	10412											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133815979	133815979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IGSF9B	NM_014987	exon2	c.C239T	p.P80L	ACGTGCGGCGGGT	.	72	31	54	0	.	68	A	133815979	G	A	133815979	3	1	78	1	0	0	0	0	1	0	0	0	7606	1116	39	1	3882	1	IGSF9B	11	133815979	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	100778468	133815979	1190537	43	10413											
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8212610	8212610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C3AR1	NM_004054	exon2	c.A172G	p.T58A	AAATTGTGTTCAC	.	94	37	85	0	.	227	C	8212610	T	C	8212610	3	2	78	1	0	0	0	0	1	0	0	0	2205	1696	59	2	1280	2	C3AR1	12	8212610	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10		8212610	125639285	44	10414											
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	32369238	32369238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	BICD1	NM_001714	exon2	c.G271T	p.E91X	ACTCGGGAGGAAA	.	79	27	98	0	.	153	T	32369238	G	T	32369238	4	4	78	1	0	0	0	0	0	1	0	0	1428	1175	41	3	277	3	BICD1	12	32369238	Nonsense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	24156628	32369238	101482657	45	10415											
IFNG	3458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68553297	68553297	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IFNG	NM_000619	exon1	c.C99G	p.N33K	CTTAAGGTTTTCT	.	111	39	124	0	.	90	C	68553297	G	C	68553297	3	2	78	1	0	0	0	0	1	0	0	0	7548	1252	44	4	417	4	IFNG	12	68553297	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	36184059	68553297	65298598	46	10416											
TPCN1	53373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113704076	113704076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TPCN1	NM_001143819	exon5	c.T545C	p.L182P	TCTACCTGATGGA	.	60	26	45	0	.	93	C	113704076	T	C	113704076	3	2	78	1	0	0	0	0	1	0	0	0	16392	1580	55	2	559	2	TPCN1	12	113704076	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	45150779	113704076	20147819	47	10417											
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118639247	118639247	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TAOK3	NM_016281	exon12	c.C841A	p.R281R	GTGGCCGGTCTCG	.	115	40	115	0	.	933	T	118639247	G	T	118639247	2	4	78	1	0	0	0	0	0	0	0	1	15546	1115	39	1		1	TAOK3	12	118639247	Silent	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	4935171	118639247	15212648	48	10418											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120578768	120578768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GCN1L1	NM_006836	exon45	c.G5889T	p.E1963D	GATGATCTCGGGG	.	71	30	58	0	.	94	A	120578768	C	A	120578768	3	1	78	1	0	0	0	0	1	0	0	0	6299	912	32	3	2182	3	GCN1L1	12	120578768	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	1939521	120578768	13273127	49	10419											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132471242	132471242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	EP400	NM_015409	exon6	c.C2113T	p.R705W	ACTTCCCGGACCC	.	40	14	41	0	.	520	T	132471242	C	T	132471242	3	4	78	1	0	0	0	0	1	0	0	0	5149	643	23	1	2128	1	EP400	12	132471242	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	11892474	132471242	1380653	50	10420											
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75580093	75580093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	NEK9	NM_033116	exon8	c.G887A	p.R296K	GTAGGTCTCTGCT	.	159	28	97	0	.	359	T	75580093	C	T	75580093	3	4	78	1	0	0	0	0	1	0	0	0	10331	913	32	3	2112	3	NEK9	14	75580093	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		75580093	31769447	51	10421											
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80328058	80328058	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	NRXN3	NM_004796	exon17	c.C2937A	p.I979I	GGTGATCCGGGAG	.	60	30	56	0	.	587	A	80328058	C	A	80328058	2	1	78	1	0	0	0	0	0	0	0	1	10667	845	30	3		3	NRXN3	14	80328058	Silent	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	4747965	80328058	27021482	52	10422											
PPP4R4	57718	hgsc.bcm.edu;bcgsc.ca	37	14	94697004	94697004	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PPP4R4	NM_058237	exon4	c.G375A	p.V125V	ATCAGTGTCAATT	.	82	5	64	0	.	94	A	94697004	G	A	94697004	2	1	78	1	0	0	0	0	0	0	0	1	12405	1364	48	3		3	PPP4R4	14	94697004	Silent	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	14368946	94697004	12652536	53	10423											
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42437866	42437866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PLA2G4F	NM_213600	exon16	c.G1687A	p.A563T	CAAAGGCGCTGCC	.	57	29	50	0	.	94	T	42437866	C	T	42437866	3	4	78	1	0	0	0	0	1	0	0	0	12006	768	27	1	882	1	PLA2G4F	15	42437866	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		42437866	60093526	54	10424											
JMJD8	339123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	733364	733364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	JMJD8	NM_001005920	exon6	c.G532A	p.G178S	GCAGGCCAAATGG	.	87	54	80	0	.	67	T	733364	C	T	733364	3	4	78	1	0	0	0	0	1	0	0	0	7956	594	21	3	341	3	JMJD8	16	733364	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		733364	89621389	55	10425											
GPRC5B	51704	broad.mit.edu;bcgsc.ca	37	16	19883581	19883581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GPRC5B	NM_016235	exon2	c.A587G	p.E196G	ATGGGCTCGTAGG	.	108	6	95	2	.	523	C	19883581	T	C	19883581	3	2	78	1	0	0	0	0	1	0	0	0	6725	1551	54	2	636	2	GPRC5B	16	19883581	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	19150217	19883581	70471172	56	10426											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27460191	27460191	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IL21R	NM_181079	exon10	c.C1270T	p.L424L	CCAGCCCTGGACC	.	91	39	48	0	.	660	T	27460191	C	T	27460191	2	4	78	1	0	0	0	0	0	0	0	1	7671	680	24	3		3	IL21R	16	27460191	Silent	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	7576610	27460191	62894562	57	10427			1	8		2	2	24	N	G_C	5.720724e-05
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27460214	27460214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IL21R	NM_181079	exon10	c.G1293T	p.E431D	CCTGGAGCCCAGC	.	84	30	45	0	.	660	T	27460214	G	T	27460214	3	4	78	1	0	0	0	0	1	0	0	0	7671	962	34	3	1257	3	IL21R	16	27460214	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	23	27460214	62894539	58	10428			1	8		2	2	24	N	G_C	5.720724e-05
PYCARD	29108	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	31212988	31212988	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PYCARD	NM_013258	exon3	c.G506A	p.W169X	CAGTTCCAGGCTG	.	26	6	30	0	.	651	T	31212988	C	T	31212988	4	4	78	1	0	0	0	0	0	1	0	0	12854	595	21	3	85	3	PYCARD	16	31212988	Nonsense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	3752774	31212988	59141765	59	10429											
C16orf87	388272	broad.mit.edu;bcgsc.ca	37	16	46865061	46865061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C16orf87	NM_001001436	exon1	c.A1G	p.M1V	CAGACATGCTCCT	.	11	6	19	0	.	90	C	46865061	T	C	46865061	3	2	78	1	0	0	0	0	1	0	0	0	1840	1464	51	2	479	2	C16orf87	16	46865061	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	15652073	46865061	43489692	60	10430											
CDH5	1003	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66434787	66434787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CDH5	NM_001795	exon11	c.A1705G	p.S569G	GGCACCAGCACGC	.	53	20	61	1	.	525	G	66434787	A	G	66434787	3	3	78	1	0	0	0	0	1	0	0	0	3113	188	7	2	1743	2	CDH5	16	66434787	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	19569726	66434787	23919966	61	10431											
RASD1	51655	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	17398678	17398678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RASD1	NM_016084	exon2	c.C607T	p.P203S	GGTCTGGGCTCAT	.	16	14	22	0	.	659	A	17398678	G	A	17398678	3	1	78	1	0	0	0	0	1	0	0	0	13066	1232	43	3	242	3	RASD1	17	17398678	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10		17398678	63796532	62	10432											
DUSP14	11072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35872856	35872856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DUSP14	NM_007026	exon3	c.A482G	p.Y161C	TAGACTACGAGCG	.	31	12	36	0	.	226	G	35872856	A	G	35872856	3	3	78	1	0	0	0	0	1	0	0	0	4814	391	14	2	484	2	DUSP14	17	35872856	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	18474178	35872856	45322354	63	10433											
GAST	2520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39872101	39872101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GAST	NM_000805	exon3	c.C283T	p.R95C	GGCCGCCGCAGTG	.	59	22	63	0	.	22	T	39872101	C	T	39872101	3	4	78	1	0	0	0	0	1	0	0	0	6252	652	23	1	289	1	GAST	17	39872101	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	3999245	39872101	41323109	64	10434											
TMEM100	55273	broad.mit.edu;bcgsc.ca	37	17	53798239	53798239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TMEM100	NM_001099640	exon4	c.T193C	p.F65L	CGATGAAGACAAC	.	73	4	80	0	.	68	G	53798239	A	G	53798239	3	3	78	1	0	0	0	0	1	0	0	0	16012	72	3	2	215	2	TMEM100	17	53798239	Missense_Mutation	SNP	A	TCGA-DD-A3A5-01A-11D-A22F-10	13926138	53798239	27396971	65	10435											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76462860	76462860	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DNAH17	NM_173628	exon56	c.G8817T	p.R2939R	TCGTACCCGCAGC	.	41	21	37	0	.	142	A	76462860	C	A	76462860	2	1	78	1	0	0	0	0	0	0	0	1	4601	610	22	3		3	DNAH17	17	76462860	Silent	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	22664621	76462860	4732350	66	10436											
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72998476	72998476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TSHZ1	NM_005786	exon2	c.G979A	p.A327T	ATGGCCGCAGAGG	.	79	34	79	0	.	90	A	72998476	G	A	72998476	3	1	78	1	0	0	0	0	1	0	0	0	16620	1087	38	1	981	1	TSHZ1	18	72998476	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10		72998476	5078772	67	10437											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758170	758170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C19orf21	NM_173481	exon2	c.C1224T	p.A408A	TGCGGCCGACCCA	.	49	17	36	0	.	91	T	758170	C	T	758170	2	4	78	1	0	0	0	0	0	0	0	1	1913	639	23	1		1	C19orf21	19	758170	Silent	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		758170	58370813	68	10438											
CEACAM6	4680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42266039	42266039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CEACAM6	NM_002483	exon4	c.T866C	p.I289T	CCAACATCACTGT	.	150	56	138	0	.	91	C	42266039	T	C	42266039	3	2	78	1	0	0	0	0	1	0	0	0	3196	1435	50	2	880	2	CEACAM6	19	42266039	Missense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	41507869	42266039	16862944	69	10439											
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48718639	48718639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CARD8	NM_001184900	exon10	c.G1306T	p.D436Y	GGAGATCCACTAC	.	72	26	72	0	.	227	A	48718639	C	A	48718639	3	1	78	1	0	0	0	0	1	0	0	0	2651	856	30	3	315	3	CARD8	19	48718639	Missense_Mutation	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10	6452600	48718639	10410344	70	10440											
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52938382	52938382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ZNF534	NM_001143939	exon3	c.G230A	p.R77K	AAAAGAGAGATCC	.	104	44	143	0	.	68	A	52938382	G	A	52938382	3	1	78	1	0	0	0	0	1	0	0	0	17970	942	33	3	240	3	ZNF534	19	52938382	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	4219743	52938382	6190601	71	10441											
ZNF132	7691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58944869	58944870	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ZNF132	NM_003433	exon3	c.1941_1942del	p.647_648del	TGTGAACTCTCTG	.	76	30	69	0	.	92	-	58944870	CT	-	58944869	7	5	78	1	0	1	0	1	0	0	0	0	17719	565	20	0	182	0	ZNF132	19	58944869	Frame_Shift_Del	DEL	CT	TCGA-DD-A3A5-01A-11D-A22F-10	6006487	58944869	184114	72	10442											
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	40794906	40794907	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	LCA5L	NM_152505	exon5	c.833_834insA	p.I278fs	ACCTGTATTTTTT	.	239	74	174	0	.	22	T	40794907	-	T	40794906	7	5	78	1	0	1	1	0	0	0	0	0	8657	449	16	0	1203	0	LCA5L	21	40794906	Frame_Shift_Ins	INS	-	TCGA-DD-A3A5-01A-11D-A22F-10		40794906	7334989	73	10443											
SGSM1	129049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25275471	25275471	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	SGSM1	NM_133454	exon15	c.C1638A	p.I546I	CCAGATCCTCTCC	.	90	44	84	0	.	27	A	25275471	C	A	25275471	2	1	78	1	0	0	0	0	0	0	0	1	14222	845	30	3		3	SGSM1	22	25275471	Silent	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		25275471	26029095	74	10444											
RFPL2	10739	hgsc.bcm.edu;bcgsc.ca	37	22	32588963	32588963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RFPL2	NM_001098527	exon4	c.C482T	p.A161V	TGGGAAGCCAGCC	.	156	7	125	0	.	91	A	32588963	G	A	32588963	3	1	78	1	0	0	0	0	1	0	0	0	13254	971	34	3	662	3	RFPL2	22	32588963	Missense_Mutation	SNP	G	TCGA-DD-A3A5-01A-11D-A22F-10	7313492	32588963	18715603	75	10445											
GJB1	2705	ucsc.edu;mdanderson.org	37	X	70444424	70444424	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GJB1	.	.	.	.	ACCAGGCAACCTC	.	91	40	114	0	.	193	T	70444424	C	T	70444424	1	4	78	0	1	0	0	0	0	0	0	0	6407	725	25	3		3	GJB1	23	70444424	RNA	SNP	C	TCGA-DD-A3A5-01A-11D-A22F-10		70444424	84826136	76	10446											
SMARCA1	6594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	128641995	128641995	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	SMARCA1	NM_139035	exon7	c.A889T	p.K297X	CAGATTTTTCTTT	.	349	139	362	1	.	230	A	128641995	T	A	128641995	4	1	78	1	0	0	0	0	0	1	0	0	14768	1850	64	4	2347	4	SMARCA1	23	128641995	Nonsense_Mutation	SNP	T	TCGA-DD-A3A5-01A-11D-A22F-10	58197571	128641995	26628565	77	10447											
TTC4	7268	ucsc.edu;bcgsc.ca	37	1	55186890	55186890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TTC4	NM_004623	exon4	c.G446A	p.C149Y	AACCCTGCCACCT	.	30	4	42	0	.	90	A	55186890	G	A	55186890	3	1	79	1	0	0	0	0	1	0	0	0	16707	1319	46	3	460	3	TTC4	1	55186890	Missense_Mutation	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10		55186890	194063731	1	10448											
C1orf177	163747	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55272679	55272679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C1orf177	NM_001110533	exon2	c.T115C	p.S39P	GACATCTCTGCTG	.	64	7	100	0	.	90	C	55272679	T	C	55272679	3	2	79	1	0	0	0	0	1	0	0	0	2017	1551	54	2	121	2	C1orf177	1	55272679	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10	85789	55272679	193977942	2	10449											
SPRR1B	6699	broad.mit.edu;bcgsc.ca	37	1	153004891	153004891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SPRR1B	NM_003125	exon2	c.C70T	p.P24S	AAACAGCCTTGCC	.	111	6	136	1	.	69	T	153004891	C	T	153004891	3	4	79	1	0	0	0	0	1	0	0	0	15095	739	26	3	72	3	SPRR1B	1	153004891	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10	97732212	153004891	96245730	3	10450											
CFHR1	3078	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	196800931	196800931	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CFHR1	NM_002113	exon6	c.G795A	p.P265P	AGATCCGTGTGTA	.	494	43	642	1	.	90	A	196800931	G	A	196800931	2	1	79	1	0	0	0	0	0	0	0	1	3284	1132	40	1		1	CFHR1	1	196800931	Silent	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10	43796040	196800931	52449690	4	10451											
LBR	3930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225599103	225599103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	LBR	NM_194442	exon9	c.A1124G	p.N375S	CGAGGGTTTAATT	.	148	17	217	1	.	228	C	225599103	T	C	225599103	3	2	79	1	0	0	0	0	1	0	0	0	8652	1725	60	2	747	2	LBR	1	225599103	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10	28798172	225599103	23651518	5	10452											
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152420154	152420154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	NEB	NM_001271208	exon119	c.T18659C	p.V6220A	CAGTGAACCACAC	.	95	4	113	0	.	145	G	152420154	A	G	152420154	3	3	79	1	0	0	0	0	1	0	0	0	10302	43	2	2	7283	2	NEB	2	152420154	Missense_Mutation	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10		152420154	90779219	6	10453											
LRP2	4036	broad.mit.edu;bcgsc.ca	37	2	170059322	170059322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	LRP2	NM_004525	exon43	c.A8153G	p.K2718R	TCACACTTCCACT	.	107	6	133	0	.	175	C	170059322	T	C	170059322	3	2	79	1	0	0	0	0	1	0	0	0	8956	1609	56	2	5962	2	LRP2	2	170059322	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10	17639168	170059322	73140051	7	10454											
LRP2	4036	broad.mit.edu;bcgsc.ca	37	2	170062972	170062972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	LRP2	NM_004525	exon39	c.A7258G	p.T2420A	TGACAGTTCTTTC	.	119	6	137	0	.	175	C	170062972	T	C	170062972	3	2	79	1	0	0	0	0	1	0	0	0	8956	1725	60	2	6873	2	LRP2	2	170062972	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10	3650	170062972	73136401	8	10455											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179463630	179463630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TTN	NM_001267550	exon291	c.G56807A	p.R18936Q	GGATCTCGGTTAA	.	134	15	200	1	.	636	T	179463630	C	T	179463630	3	4	79	1	0	0	0	0	1	0	0	0	16732	884	31	1	51174	1	TTN	2	179463630	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10	9400658	179463630	63735743	9	10456											
EPHA3	2042	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	89480486	89480486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	EPHA3	NM_005233	exon13	c.C2323T	p.P775S	GATGACCCAGAAG	.	100	8	130	0	.	1500	T	89480486	C	T	89480486	3	4	79	1	0	0	0	0	1	0	0	0	5168	623	22	3	2399	3	EPHA3	3	89480486	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10		89480486	108541944	10	10457											
PCCB	5096	ucsc.edu;bcgsc.ca	37	3	136012601	136012601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PCCB	NM_001178014	exon8	c.A718G	p.T240A	CAGGACACCTCCT	.	35	4	40	0	.	90	G	136012601	A	G	136012601	3	3	79	1	0	0	0	0	1	0	0	0	11505	159	6	2	748	2	PCCB	3	136012601	Missense_Mutation	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10	46532115	136012601	62009829	11	10458											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	5209306	5209306	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ADAMTS16	NM_139056	exon10	c.T1552A	p.C518S	ACACAGTGCAAGT	.	120	7	185	0	.	275	A	5209306	T	A	5209306	3	1	79	1	0	0	0	0	1	0	0	0	261	1696	59	4	1590	4	ADAMTS16	5	5209306	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10		5209306	175705954	12	10459											
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119327610	119327610	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FAM184A	NM_001100411	exon8	c.1455+2T>C	.	GAAATTACCTCCA	.	75	13	117	0	.	519	G	119327610	A	G	119327610	5	3	79	1	0	0	0	0	0	0	1	0	5511	405	14	2	1653	2	FAM184A	6	119327610	Splice_Site	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10		119327610	51787457	13	10460											
C6orf118	168090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	165715587	165715587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C6orf118	NM_144980	exon2	c.C224T	p.T75M	AAGATCGTCTCCG	.	86	7	119	0	.	90	A	165715587	G	A	165715587	3	1	79	1	0	0	0	0	1	0	0	0	2323	1145	40	1	1217	1	C6orf118	6	165715587	Missense_Mutation	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10	46387977	165715587	5399480	14	10461											
PPP1R3A	5506	broad.mit.edu;bcgsc.ca	37	7	113518454	113518454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PPP1R3A	NM_002711	exon4	c.T2693C	p.V898A	GAATGCACAATGG	.	90	5	141	0	.	832	G	113518454	A	G	113518454	3	3	79	1	0	0	0	0	1	0	0	0	12371	159	6	2	679	2	PPP1R3A	7	113518454	Missense_Mutation	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10		113518454	45620209	15	10462											
MYOM2	9172	broad.mit.edu;bcgsc.ca	37	8	2071191	2071191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MYOM2	NM_003970	exon29	c.A3520G	p.T1174A	ACGGAGACACTGC	.	75	4	91	0	.	95	G	2071191	A	G	2071191	3	3	79	1	0	0	0	0	1	0	0	0	10092	275	10	2	3630	2	MYOM2	8	2071191	Missense_Mutation	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10		2071191	144292831	16	10463											
CER1	9350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14720318	14720318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CER1	NM_005454	exon2	c.T574C	p.S192P	GAACAGACCCGCA	.	81	10	106	1	.	226	G	14720318	A	G	14720318	3	3	79	1	0	0	0	0	1	0	0	0	3265	275	10	2	233	2	CER1	9	14720318	Missense_Mutation	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10		14720318	126493113	17	10464											
TAF1L	138474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32631815	32631815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TAF1L	NM_153809	exon1	c.C3763T	p.R1255W	GGTTCCGCTTAAG	.	208	28	310	1	.	870	A	32631815	G	A	32631815	3	1	79	1	0	0	0	0	1	0	0	0	15520	1086	38	1	1721	1	TAF1L	9	32631815	Missense_Mutation	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10	17911497	32631815	108581616	18	10465											
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93902837	93902837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CPEB3	NM_014912	exon6	c.G1402A	p.V468I	CTACTACGAGAGG	.	44	5	66	0	.	90	T	93902837	C	T	93902837	3	4	79	1	0	0	0	0	1	0	0	0	3802	536	19	1	714	1	CPEB3	10	93902837	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10		93902837	41631910	19	10466											
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116417799	116417799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ABLIM1	NM_002313	exon1	c.G161A	p.R54H	GTGGCACGCCTAT	.	92	10	122	0	.	153	T	116417799	C	T	116417799	3	4	79	1	0	0	0	0	1	0	0	0	94	536	19	1	2351	1	ABLIM1	10	116417799	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10	22514962	116417799	19116948	20	10467											
SERGEF	26297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18010209	18010209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SERGEF	NM_012139	exon8	c.A779C	p.H260P	AAACAATGTGCTT	.	70	9	120	0	.	227	G	18010209	T	G	18010209	3	3	79	1	0	0	0	0	1	0	0	0	14077	1464	51	5	613	5	SERGEF	11	18010209	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10		18010209	116996307	21	10468											
OR5T2	219464	broad.mit.edu;bcgsc.ca	37	11	56000370	56000370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	OR5T2	NM_001004746	exon1	c.A292G	p.M98V	AGTACATGGGTTT	.	74	4	117	0	.	70	C	56000370	T	C	56000370	3	2	79	1	0	0	0	0	1	0	0	0	11182	1464	51	2	786	2	OR5T2	11	56000370	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10	37990161	56000370	79006146	22	10469											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu	37	11	65111286	65111286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	DPF2	NM_006268	exon5	c.G536A	p.R179H	CCAAGCGTCGGGG	.	90	4	124	0	.	91	A	65111286	G	A	65111286	3	1	79	1	0	0	0	0	1	0	0	0	4717	1145	40	1	554	1	DPF2	11	65111286	Missense_Mutation	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10	9110916	65111286	69895230	23	10470											
MYO1H	283446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109838904	109838904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001101421	exon5	c.C529A	p.P177T	GGCATTCCCGTAG	.	66	8	81	1	.	.	A	109838904	C	A	109838904	3	1	79	1	0	0	0	0	1	0	0	0	10075	855	30	3	547	3	MYO1H	12	109838904	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10		109838904	24012991	24	10471											
CCNA1	8900	ucsc.edu;bcgsc.ca	37	13	37007267	37007267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CCNA1	NM_003914	exon2	c.T206C	p.L69P	AGATACTCACCAG	.	36	6	40	0	.	418	C	37007267	T	C	37007267	3	2	79	1	0	0	0	0	1	0	0	0	2909	1551	54	2	212	2	CCNA1	13	37007267	Missense_Mutation	SNP	T	TCGA-DD-A3A6-01A-11D-A22F-10		37007267	78162611	25	10472											
FUT8	2530	hgsc.bcm.edu;bcgsc.ca	37	14	66188664	66188665	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FUT8	NM_178155	exon8	c.1007_1008insA	p.I336fs	ACTTGATCCGCCC	.	97	11	129	0	.	91	A	66188665	-	A	66188664	7	5	79	1	0	1	1	0	0	0	0	0	6110	1435	50	0	1128	0	FUT8	14	66188664	Frame_Shift_Ins	INS	-	TCGA-DD-A3A6-01A-11D-A22F-10		66188664	41160876	26	10473											
PARP16	54956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	65563339	65563339	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PARP16	NM_017851	exon2	c.C246T	p.A82A	GTCCCAGGCCCGT	.	93	8	110	0	.	522	A	65563339	G	A	65563339	2	1	79	1	0	0	0	0	0	0	0	1	11460	987	35	3		3	PARP16	15	65563339	Silent	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10		65563339	36968053	27	10474											
TSC2	7249	broad.mit.edu;bcgsc.ca	37	16	2130279	2130279	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TSC2	NM_001114382	exon30	c.3511delG	p.A1171fs	GCCTCAGCTGGCA	.	68	9	118	0	.	1908	-	2130279	G	-	2130279	7	5	79	1	0	1	0	1	0	0	0	0	16603	971	34	0	3625	0	TSC2	16	2130279	Frame_Shift_Del	DEL	G	TCGA-DD-A3A6-01A-11D-A22F-10		2130279	88224474	28	10475											
B4GALT6	9331	broad.mit.edu;bcgsc.ca	37	18	29237968	29237968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	B4GALT6	NM_004775	exon3	c.T317C	p.L106P	CAGGGGAGGTATG	.	113	6	180	1	.	90	G	29237968	A	G	29237968	3	3	79	1	0	0	0	0	1	0	0	0	1275	304	11	2	859	2	B4GALT6	18	29237968	Missense_Mutation	SNP	A	TCGA-DD-A3A6-01A-11D-A22F-10		29237968	48839280	29	10476											
NCR1	9437	ucsc.edu;bcgsc.ca	37	19	55418067	55418067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	NCR1	NM_001145458	exon3	c.C257T	p.P86L	ACATCCCGGACAT	.	43	4	53	0	.	154	T	55418067	C	T	55418067	3	4	79	1	0	0	0	0	1	0	0	0	10237	652	23	1	267	1	NCR1	19	55418067	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10		55418067	3710916	30	10477											
C20orf96	140680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	257508	257508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C20orf96	NM_153269	exon9	c.C838T	p.P280S	CATAGGGACGCTG	.	72	10	110	0	.	90	A	257508	G	A	257508	3	1	79	1	0	0	0	0	1	0	0	0	2122	1174	41	3	265	3	C20orf96	20	257508	Missense_Mutation	SNP	G	TCGA-DD-A3A6-01A-11D-A22F-10		257508	62768012	31	10478											
RGN	9104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46951499	46951499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RGN	NM_004683	exon6	c.C734A	p.T245K	ATAAAACAACTTC	.	72	11	99	0	.	130	A	46951499	C	A	46951499	3	1	79	1	0	0	0	0	1	0	0	0	13282	478	17	3	752	3	RGN	23	46951499	Missense_Mutation	SNP	C	TCGA-DD-A3A6-01A-11D-A22F-10		46951499	108319061	32	10479											
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27734780	27734780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WASF2	NM_006990	exon9	c.A1400G	p.N467S	ACGTCATTGCCCA	.	88	35	119	0	.	228	C	27734780	T	C	27734780	3	2	80	1	0	0	0	0	1	0	0	0	17250	1493	52	2	100	2	WASF2	1	27734780	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		27734780	221515841	1	10480											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32206014	32206014	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BAI2	NM_001703	exon12	c.C1923T	p.D641D	CAGAATGTCCACA	.	65	22	88	0	.	526	A	32206014	G	A	32206014	2	1	80	1	0	0	0	0	0	0	0	1	1299	1368	48	3		3	BAI2	1	32206014	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	4471234	32206014	217044607	2	10481											
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52272522	52272522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NRD1	NM_002525	exon20	c.A2258G	p.N753S	GGAGTATTCACAA	.	205	80	288	0	.	90	C	52272522	T	C	52272522	3	2	80	1	0	0	0	0	1	0	0	0	10645	1493	52	2	1457	2	NRD1	1	52272522	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	20066508	52272522	196978099	3	10482											
RAVER2	55225	broad.mit.edu;bcgsc.ca	37	1	65280433	65280433	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RAVER2	NM_018211	exon11	c.C1800T	p.S600S	AAGCAGCATTCTG	.	49	15	58	1	.	135	T	65280433	C	T	65280433	2	4	80	1	0	0	0	0	0	0	0	1	13095	709	25	3		3	RAVER2	1	65280433	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	13007911	65280433	183970188	4	10483											
ODF2L	57489	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86814445	86814445	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ODF2L	NM_001184765	exon17	c.A1851C	p.T617T	AAACATTGTTACA	.	172	70	215	1	.	69	G	86814445	T	G	86814445	2	3	80	1	0	0	0	0	0	0	0	1	10828	1799	63	5		5	ODF2L	1	86814445	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	21534012	86814445	162436176	5	10484											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152191055	152191055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRNR	NM_001009931	exon3	c.G3050C	p.G1017A	CCGGAACCAGACC	.	272	23	187	0	.	93	G	152191055	C	G	152191055	3	3	80	1	0	0	0	0	1	0	0	0	7359	507	18	4	5506	4	HRNR	1	152191055	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	65376610	152191055	97059566	6	10485											
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155823310	155823310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GON4L	NM_001037533	exon2	c.A262C	p.N88H	GTACATTTGTGTT	.	382	33	190	0	.	93	G	155823310	T	G	155823310	3	3	80	1	0	0	0	0	1	0	0	0	6572	1841	64	5	6701	5	GON4L	1	155823310	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	3632255	155823310	93427311	7	10486											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669566	158669566	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR6K2	NM_001005279	exon1	c.C877T	p.L293L	TCCTCAGGCTATA	.	232	157	194	0	.	69	A	158669566	G	A	158669566	2	1	80	1	0	0	0	0	0	0	0	1	11202	991	35	3		3	OR6K2	1	158669566	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	2846256	158669566	90581055	8	10487											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164789392	164789392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PBX1	NM_001204963	exon7	c.G1081A	p.A361T	CAAGGGGCCCAGG	.	160	25	153	0	.	659	A	164789392	G	A	164789392	3	1	80	1	0	0	0	0	1	0	0	0	11492	1203	42	3	1107	3	PBX1	1	164789392	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	6119826	164789392	84461229	9	10488											
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229636533	229636533	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUP133	NM_018230	exon4	c.T483C	p.S161S	GGGAGAAGAGTAA	.	102	22	41	0	.	271	G	229636533	A	G	229636533	2	3	80	1	0	0	0	0	0	0	0	1	10754	59	3	2		2	NUP133	1	229636533	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	64847141	229636533	19614088	10	10489											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9508603	9508603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASAP2	NM_001135191	exon16	c.G1511A	p.C504Y	AATGTTGCCTACC	.	78	30	86	0	.	90	A	9508603	G	A	9508603	3	1	80	1	0	0	0	0	1	0	0	0	1011	1319	46	3	1573	3	ASAP2	2	9508603	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10		9508603	233690770	11	10490											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9630394	9630394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM17	NM_003183	exon19	c.C2387T	p.T796M	TGGTCCGTGAGAT	.	133	61	153	0	.	659	A	9630394	G	A	9630394	3	1	80	1	0	0	0	0	1	0	0	0	238	1145	40	1	91	1	ADAM17	2	9630394	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	121791	9630394	233568979	12	10491											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21251239	21251240	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	APOB	NM_000384	exon13	c.1789_1790insT	p.I597fs	TGGCAATATGGGA	.	119	48	157	0	.	175	A	21251240	-	A	21251239	7	5	80	1	0	1	1	0	0	0	0	0	785	1406	49	0	11970	0	APOB	2	21251239	Frame_Shift_Ins	INS	-	TCGA-DD-A3A7-01A-11D-A22F-10	11620845	21251239	221948134	13	10492											
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71043463	71043463	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CLEC4F	NM_173535	exon4	c.C1050T	p.G350G	CAGACGGCCATTT	.	179	69	213	0	.	95	A	71043463	G	A	71043463	2	1	80	1	0	0	0	0	0	0	0	1	3516	1190	42	3		3	CLEC4F	2	71043463	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	49792224	71043463	172155910	14	10493											
ALMS1	7840	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73679628	73679628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.C5971A	p.H1991N	CATTCACATAAAG	.	96	32	123	2	.	142	A	73679628	C	A	73679628	3	1	80	1	0	0	0	0	1	0	0	0	535	478	17	3	6001	3	ALMS1	2	73679628	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	2636165	73679628	169519745	15	10494			1	9		3	3	171	N	T_C_A	2.894712e-07
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73679731	73679731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.A6074G	p.K2025R	AGCCCAAGATTTC	.	80	33	136	0	.	142	G	73679731	A	G	73679731	3	3	80	1	0	0	0	0	1	0	0	0	535	72	3	2	6104	2	ALMS1	2	73679731	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	103	73679731	169519642	16	10495			1	9		3	3	171	N	T_C_A	2.894712e-07
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	73679798	73679798	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.T6141A	p.Y2047X	TTCCTATTCTCAA	.	86	35	144	0	.	142	A	73679798	T	A	73679798	4	1	80	1	0	0	0	0	0	1	0	0	535	1500	52	4	6171	4	ALMS1	2	73679798	Nonsense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	67	73679798	169519575	17	10496			1	9		3	3	171	N	T_C_A	2.894712e-07
PLA2R1	22925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160833798	160833798	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLA2R1	NM_001195641	exon15	c.A2398C	p.R800R	TACCTCTTGGGAT	.	170	42	136	1	.	93	G	160833798	T	G	160833798	2	3	80	1	0	0	0	0	0	0	0	1	12010	1617	56	5		5	PLA2R1	2	160833798	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	87154000	160833798	82365575	18	10497											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162799343	162799343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC4A10	NM_001178015	exon16	c.T2039G	p.L680W	GCACATTGAAGGA	.	61	23	34	0	.	229	G	162799343	T	G	162799343	3	3	80	1	0	0	0	0	1	0	0	0	14651	1821	63	5	2186	5	SLC4A10	2	162799343	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	1965545	162799343	80400030	19	10498											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	ACCTTCATAGACC	.	338	77	253	0	.	636	G	179560596	A	G	179560596	2	3	80	1	0	0	0	0	0	0	0	1	16732	224	8	2		2	TTN	2	179560596	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	16761253	179560596	63638777	20	10499											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196682482	196682482	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNAH7	NM_018897	exon50	c.A9363G	p.Q3121Q	CCTTTCTTGTGCC	.	135	42	84	0	.	102	C	196682482	T	C	196682482	2	2	80	1	0	0	0	0	0	0	0	1	4606	1606	56	2		2	DNAH7	2	196682482	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	17121886	196682482	46516891	21	10500											
IQCA1	79781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237233372	237233372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQCA1	NM_001270585	exon19	c.G2452A	p.G818S	TGCTGCCTCCTGT	.	80	67	83	1	.	23	T	237233372	C	T	237233372	3	4	80	1	0	0	0	0	1	0	0	0	7802	681	24	3	44	3	IQCA1	2	237233372	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	40550890	237233372	5966001	22	10501											
OXSM	54995	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25833480	25833480	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OXSM	NM_017897	exon2	c.T969A	p.G323G	AGAAGGTGCCTTA	.	17	6	23	0	.	132	A	25833480	T	A	25833480	2	1	80	1	0	0	0	0	0	0	0	1	11335	1683	59	4		4	OXSM	3	25833480	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		25833480	172188950	23	10502											
COL7A1	1294	ucsc.edu;bcgsc.ca	37	3	48606275	48606275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COL7A1	NM_000094	exon103	c.A7700G	p.E2567G	CCAGGCTCTCCCT	.	44	4	43	0	.	160	C	48606275	T	C	48606275	3	2	80	1	0	0	0	0	1	0	0	0	3704	1551	54	2	1198	2	COL7A1	3	48606275	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	22772795	48606275	149416155	24	10503											
IQCF1	132141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51937031	51937031	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQCF1	NM_152397	exon2	c.T78C	p.H26H	GGACAAATGGGTT	.	240	84	296	0	.	91	G	51937031	A	G	51937031	2	3	80	1	0	0	0	0	0	0	0	1	7807	98	4	2		2	IQCF1	3	51937031	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	3330756	51937031	146085399	25	10504											
PCCB	5096	ucsc.edu;bcgsc.ca	37	3	135969390	135969390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCCB	NM_001178014	exon1	c.A173G	p.Q58R	ACGCGCAGCACAA	.	29	4	46	0	.	90	G	135969390	A	G	135969390	3	3	80	1	0	0	0	0	1	0	0	0	11505	188	7	2	175	2	PCCB	3	135969390	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	84032359	135969390	62053040	26	10505											
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156234115	156234115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KCNAB1	NM_172160	exon11	c.G922A	p.G308R	AAATACGGAAACG	.	72	34	104	0	.	94	A	156234115	G	A	156234115	3	1	80	1	0	0	0	0	1	0	0	0	8009	1117	39	1	1435	1	KCNAB1	3	156234115	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	20264725	156234115	41788315	27	10506											
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	982779	982779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC26A1	NM_022042	exon3	c.A1948C	p.S650R	GCGGGCTGCAGCA	.	45	16	46	0	.	91	G	982779	T	G	982779	3	3	80	1	0	0	0	0	1	0	0	0	14514	1580	55	5	264	5	SLC26A1	4	982779	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		982779	190171497	28	10507											
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578055	5578055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EVC2	NM_147127	exon18	c.G3184T	p.G1062W	CCTCCCCAGGTTC	.	55	6	79	0	.	155	A	5578055	C	A	5578055	3	1	80	1	0	0	0	0	1	0	0	0	5286	594	21	3	762	3	EVC2	4	5578055	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	4595276	5578055	185576221	29	10508											
NCAPG	64151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17841380	17841380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NCAPG	NM_022346	exon17	c.T2548C	p.Y850H	CGAGTCTATACAA	.	77	22	131	0	.	153	C	17841380	T	C	17841380	3	2	80	1	0	0	0	0	1	0	0	0	10207	1522	53	2	2614	2	NCAPG	4	17841380	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	12263325	17841380	173312896	30	10509											
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965098	42965098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.G574T	p.V192F	CGACGAGTTTCTG	.	158	34	228	0	.	23	T	42965098	G	T	42965098	3	4	80	1	0	0	0	0	1	0	0	0	6812	1029	36	3	580	3	GRXCR1	4	42965098	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	25123718	42965098	148189178	31	10510			2	10		2	2	14	N	G_C	5.837014e-05
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965111	42965111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.C587T	p.P196L	AAGCTCCTTCCCT	.	155	33	229	0	.	23	T	42965111	C	T	42965111	3	4	80	1	0	0	0	0	1	0	0	0	6812	681	24	3	593	3	GRXCR1	4	42965111	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	13	42965111	148189165	32	10511			2	10		2	2	14	N	G_C	5.837014e-05
ADAMTS3	9508	broad.mit.edu;bcgsc.ca	37	4	73176810	73176810	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAMTS3	NM_014243	exon14	c.T2010C	p.C670C	GTAAGAACAGTGC	.	118	5	167	0	.	651	G	73176810	A	G	73176810	2	3	80	1	0	0	0	0	0	0	0	1	267	41	2	2		2	ADAMTS3	4	73176810	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	30211699	73176810	117977466	33	10512											
BMP3	651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	81967179	81967179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BMP3	NM_001201	exon2	c.A604G	p.I202V	AAAGATATCACTC	.	47	23	76	0	.	518	G	81967179	A	G	81967179	3	3	80	1	0	0	0	0	1	0	0	0	1461	449	16	2	610	2	BMP3	4	81967179	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	8790369	81967179	109187097	34	10513											
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	121737607	121737607	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM5	NM_018699	exon8	c.865+1G>T	.	TCCTCACCAGTGT	.	85	36	116	0	.	91	A	121737607	C	A	121737607	5	1	80	1	0	0	0	0	0	0	1	0	12460	521	18	3	1066	3	PRDM5	4	121737607	Splice_Site	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	39770428	121737607	69416669	35	10514											
RNF175	285533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154649420	154649420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RNF175	NM_173662	exon4	c.G340A	p.V114I	TAATAACGGAGAA	.	62	31	82	0	.	47	T	154649420	C	T	154649420	3	4	80	1	0	0	0	0	1	0	0	0	13463	536	19	1	670	1	RNF175	4	154649420	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	32911813	154649420	36504856	36	10515											
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	31294184	31294184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CDH6	NM_004932	exon3	c.G344A	p.R115K	CCAAGAGGCTGGA	.	143	12	112	0	.	159	A	31294184	G	A	31294184	3	1	80	1	0	0	0	0	1	0	0	0	3114	1000	35	3	350	3	CDH6	5	31294184	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10		31294184	149621076	37	10516											
JMY	133746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78610232	78610232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	JMY	NM_152405	exon9	c.A2217C	p.E739D	GGGAGAAGGAAGA	.	160	70	131	0	.	227	C	78610232	A	C	78610232	3	2	80	1	0	0	0	0	1	0	0	0	7957	69	3	5	2251	5	JMY	5	78610232	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	47316048	78610232	102305028	38	10517											
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	86685321	86685321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RASA1	NM_002890	exon24	c.A3037G	p.S1013G	ACGCTCAGTAATG	.	115	31	101	0	.	661	G	86685321	A	G	86685321	3	3	80	1	0	0	0	0	1	0	0	0	13060	188	7	2	3143	2	RASA1	5	86685321	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	8075089	86685321	94229939	39	10518											
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102440400	102440400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GIN1	NM_017676	exon4	c.A484G	p.I162V	TGATTATAGCATA	.	166	36	151	0	.	92	C	102440400	T	C	102440400	3	2	80	1	0	0	0	0	1	0	0	0	6386	1406	49	2	1104	2	GIN1	5	102440400	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	15755079	102440400	78474860	40	10519											
ETF1	2107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137844022	137844022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ETF1	NM_004730	exon11	c.A1286T	p.D429V	AATTCATCGTCTC	.	77	14	60	0	.	229	A	137844022	T	A	137844022	3	1	80	1	0	0	0	0	1	0	0	0	5268	1435	50	4	31	4	ETF1	5	137844022	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	35403622	137844022	43071238	41	10520											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140187339	140187339	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA4	NM_031500	exon1	c.A567G	p.V189V	GCTGGTAAAAGGT	.	191	49	171	0	.	96	G	140187339	A	G	140187339	2	3	80	1	0	0	0	0	0	0	0	1	11526	349	13	2		2	PCDHA4	5	140187339	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	2343317	140187339	40727921	42	10521											
PCDHA13	56136	broad.mit.edu;ucsc.edu	37	5	140263243	140263243	+	Missense_Mutation	SNP	G	G	A	rs139987047		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA13	NM_031865	exon1	c.G1390A	p.V464M	GTGTTCGTGAAGG	.	32	5	42	0	G|1.000;A|0.000	75	A	140263243	G	A	140263243	3	1	80	1	0	0	0	0	1	0	0	0	11523	1145	40	1	1392	1	PCDHA13	5	140263243	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	75904	140263243	40652017	43	10522											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140724102	140724102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHGA3	NM_032011	exon1	c.C502A	p.Q168K	TCCCTGCAGAACT	.	149	34	113	0	.	68	A	140724102	C	A	140724102	3	1	80	1	0	0	0	0	1	0	0	0	11555	711	25	3	504	3	PCDHGA3	5	140724102	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	460859	140724102	40191158	44	10523											
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156727773	156727773	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CYFIP2	NM_001037332	exon6	c.C438G	p.A146A	CCATGCCGAGCGC	.	133	86	112	0	.	22	G	156727773	C	G	156727773	2	3	80	1	0	0	0	0	0	0	0	1	4138	639	23	4		4	CYFIP2	5	156727773	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	16003671	156727773	24187487	45	10524											
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535372	169535372	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FOXI1	NM_012188	exon2	c.C894A	p.P298P	CCACCCCTTGGTC	.	128	29	109	0	.	229	A	169535372	C	A	169535372	2	1	80	1	0	0	0	0	0	0	0	1	6009	668	24	3		3	FOXI1	5	169535372	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	12807599	169535372	11379888	46	10525											
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	174151962	174151962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MSX2	NM_002449	exon1	c.G300A	p.E100E	CTTCGAGACCGCC	.	35	7	39	0	.	90	A	174151962	G	A	174151962	2	1	80	1	0	0	0	0	0	0	0	1	9896	933	33	3		3	MSX2	5	174151962	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	4616590	174151962	6763298	47	10526											
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176308352	176308352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon18	c.C2578A	p.L860M	CTGCCAGCTCTTC	.	84	21	59	0	.	294	T	176308352	G	T	176308352	3	4	80	1	0	0	0	0	1	0	0	0	7192	962	34	3	201	3	HK3	5	176308352	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	2156390	176308352	4606908	48	10527											
HK3	3101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176316669	176316669	+	Missense_Mutation	SNP	G	G	A	rs147991837	byfrequency	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon7	c.C707T	p.P236L	TCACACGGCCTGA	.	87	11	62	0	G|1.000;A|0.000	294	A	176316669	G	A	176316669	3	1	80	1	0	0	0	0	1	0	0	0	7192	1116	39	1	2116	1	HK3	5	176316669	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	8317	176316669	4598591	49	10528											
CD109	135228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74492373	74492373	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CD109	NM_133493	exon18	c.2000delA	p.E667fs	TGGAGGAAAATGA	.	83	30	123	0	.	155	-	74492373	A	-	74492373	7	5	80	1	0	1	0	1	0	0	0	0	2963	246	9	0	2070	0	CD109	6	74492373	Frame_Shift_Del	DEL	A	TCGA-DD-A3A7-01A-11D-A22F-10		74492373	96622694	50	10529											
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	76376479	76376480	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.1046_1047insTT	p.E349fs	GAAGAGAAAGCAT	.	43	18	70	0	.	660	TT	76376480	-	TT	76376479	7	5	80	1	0	1	1	0	0	0	0	0	14050	246	9	0	1084	0	SENP6	6	76376479	Frame_Shift_Ins	INS	-	TCGA-DD-A3A7-01A-11D-A22F-10	1884106	76376479	94738588	51	10530	59	2									
SENP6	26054	hgsc.bcm.edu;bcgsc.ca	37	6	76376480	76376481	+	Missense_Mutation	DNP	AA	AA	TC	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	p.ES349DR	AAGAGAAAGCATA	.	44	19	71	0	.	.	TC	76376481	AA	TC	76376480	3	4	80	1	0	0	0	0	1	0	0	0	14050	11	1	4	1085	4	SENP6	6	76376480	Missense_Mutation	DNP	AA	TCGA-DD-A3A7-01A-11D-A22F-10	1	76376480	94738587	52	10531	59	2									
CASP8AP2	9994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90562907	90562907	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CASP8AP2	NM_001137667	exon3	c.T78C	p.D26D	CAATGATGAAGGC	.	167	72	126	1	.	24	C	90562907	T	C	90562907	2	2	80	1	0	0	0	0	0	0	0	1	2678	1461	51	2		2	CASP8AP2	6	90562907	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	14186427	90562907	80552160	53	10532											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1525069	1525069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001080453	exon23	c.G3013T	p.D1005Y	CCCCGTCCCGCAG	.	47	33	40	0	.	.	A	1525069	C	A	1525069	3	1	80	1	0	0	0	0	1	0	0	0	7775	855	30	3	3663	3	INTS1	7	1525069	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10		1525069	157613594	54	10533											
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23207527	23207527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KLHL7	NM_001031710	exon9	c.T1250C	p.L417P	GCATGCTGACCCA	.	158	32	127	0	.	90	C	23207527	T	C	23207527	3	2	80	1	0	0	0	0	1	0	0	0	8394	1580	55	2	1347	2	KLHL7	7	23207527	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	21682458	23207527	135931136	55	10534											
NPVF	64111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	25267920	25267920	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPVF	NM_022150	exon2	c.138+1G>A	.	AACTTACCTCAGA	.	245	63	154	0	.	91	T	25267920	C	T	25267920	5	4	80	1	0	0	0	0	0	0	1	0	10605	521	18	3	463	3	NPVF	7	25267920	Splice_Site	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	2060393	25267920	133870743	56	10535											
BBS9	27241	broad.mit.edu;bcgsc.ca	37	7	33192464	33192464	+	Splice_Site	SNP	G	G	A	rs137962929		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BBS9	NM_198428	exon3	c.263+1G>A	.	TGTTTCGTAAGTA	.	103	5	47	0	G|1.000;A|0.000	230	A	33192464	G	A	33192464	5	1	80	1	0	0	0	0	0	0	1	0	1342	1159	40	1	270	1	BBS9	7	33192464	Splice_Site	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	7924544	33192464	125946199	57	10536											
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51098538	51098538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COBL	NM_015198	exon9	c.C1475G	p.T492S	GCAAGGGTTTTAC	.	201	54	191	0	.	95	C	51098538	G	C	51098538	3	2	80	1	0	0	0	0	1	0	0	0	3653	1261	44	4	2330	4	COBL	7	51098538	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	17906074	51098538	108040125	58	10537											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70228060	70228060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AUTS2	NM_001127231	exon7	c.G947A	p.R316Q	AACTCCGAGCTCC	.	67	11	66	0	.	92	A	70228060	G	A	70228060	3	1	80	1	0	0	0	0	1	0	0	0	1225	1058	37	1	1118	1	AUTS2	7	70228060	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	19129522	70228060	88910603	59	10538											
ADAM22	53616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87780308	87780308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM22	NM_021722	exon19	c.A1579T	p.I527F	CCTAATATTCATA	.	220	83	314	0	.	230	T	87780308	A	T	87780308	3	4	80	1	0	0	0	0	1	0	0	0	244	449	16	4	1653	4	ADAM22	7	87780308	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	17552248	87780308	71358355	60	10539											
PARP12	64761	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139756829	139756829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PARP12	NM_022750	exon3	c.A587G	p.K196R	GATCTCTTACAGC	.	63	20	78	1	.	525	C	139756829	T	C	139756829	3	2	80	1	0	0	0	0	1	0	0	0	11457	1609	56	2	1558	2	PARP12	7	139756829	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	51976521	139756829	19381834	61	10540											
TAS2R38	5726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141672569	141672569	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAS2R38	NM_176817	exon1	c.T921A	p.A307A	CATCACAGCTCTC	.	67	23	98	0	.	92	T	141672569	A	T	141672569	2	4	80	1	0	0	0	0	0	0	0	1	15572	175	7	4		4	TAS2R38	7	141672569	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	1915740	141672569	17466094	62	10541											
ZNF786	136051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148767724	148767724	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZNF786	NM_152411	exon4	c.C2140A	p.R714R	TTTCCCGGAAGTT	.	120	47	108	1	.	50	T	148767724	G	T	148767724	2	4	80	1	0	0	0	0	0	0	0	1	18155	1115	39	1		1	ZNF786	7	148767724	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	7095155	148767724	10370939	63	10542											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151970850	151970850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL3	NM_170606	exon7	c.C952A	p.Q318K	AATCCTGAAAGGT	.	334	20	484	0	.	1398	T	151970850	G	T	151970850	3	4	80	1	0	0	0	0	1	0	0	0	9622	1299	45	3	13995	3	MLL3	7	151970850	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	3203126	151970850	7167813	64	10543											
SLC30A8	169026	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118169990	118169990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC30A8	NM_173851	exon4	c.A479G	p.Y160C	TAGTGTACCTGGC	.	319	58	245	2	.	229	G	118169990	A	G	118169990	3	3	80	1	0	0	0	0	1	0	0	0	14561	391	14	2	493	2	SLC30A8	8	118169990	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10		118169990	28194032	65	10544											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123963936	123963936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZHX2	NM_014943	exon3	c.G186A	p.E62E	GATAGAGGTGAAA	.	82	16	62	0	.	227	A	123963936	G	A	123963936	2	1	80	1	0	0	0	0	0	0	0	1	17673	991	35	3		3	ZHX2	8	123963936	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	5793946	123963936	22400086	66	10545											
RECQL4	9401	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145738331	145738331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RECQL4	NM_004260	exon16	c.T2654C	p.L885P	TGGCTAAGCTGCT	.	140	30	92	1	.	1083	G	145738331	A	G	145738331	3	3	80	1	0	0	0	0	1	0	0	0	13202	72	3	2	1000	2	RECQL4	8	145738331	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	21774395	145738331	625691	67	10546											
FAM122A	116224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71395649	71395649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FAM122A	NM_138333	exon1	c.C569A	p.P190H	AGAGCCCCATCAA	.	118	49	155	0	.	90	A	71395649	C	A	71395649	3	1	80	1	0	0	0	0	1	0	0	0	5419	623	22	3	571	3	FAM122A	9	71395649	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10		71395649	69817782	68	10547											
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	115805121	115805121	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZFP37	NM_003408	exon4	c.C1777T	p.R593X	GGGATCGCTGATG	.	102	39	126	0	.	92	A	115805121	G	A	115805121	4	1	80	1	0	0	0	0	0	1	0	0	17645	1095	38	1	119	1	ZFP37	9	115805121	Nonsense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	44409472	115805121	25408310	69	10548											
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006438	8006438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAF3	NM_031923	exon3	c.A965G	p.K322R	GTCCCAAGAGCCC	.	42	18	47	0	.	69	G	8006438	A	G	8006438	3	3	80	1	0	0	0	0	1	0	0	0	15522	72	3	2	975	2	TAF3	10	8006438	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10		8006438	127528309	70	10549											
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18250660	18250660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC39A12	NM_152725	exon3	c.A412G	p.K138E	AGTAATAAAGAGT	.	138	60	175	1	.	154	G	18250660	A	G	18250660	3	3	80	1	0	0	0	0	1	0	0	0	14615	363	13	2	418	2	SLC39A12	10	18250660	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	10244222	18250660	117284087	71	10550											
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	29581509	29581509	+	Silent	SNP	C	C	T	rs141824789		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LYZL1	NM_032517	exon3	c.C339T	p.D113D	GGATGACGGCAGC	.	89	5	140	0	C|1.000;T|0.000	90	T	29581509	C	T	29581509	2	4	80	1	0	0	0	0	0	0	0	1	9131	535	19	1		1	LYZL1	10	29581509	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	11330849	29581509	105953238	72	10551											
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70508892	70508893	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	TTTAAAGCTGGTT	.	48	24	34	0	.	.	TT	70508893	GC	TT	70508892	3	4	80	1	0	0	0	0	1	0	0	0	2730	985	34	3	856	3	CCAR1	10	70508892	Missense_Mutation	DNP	GC	TCGA-DD-A3A7-01A-11D-A22F-10	40927383	70508892	65025855	73	10552											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6579425	6579425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNHD1	NM_144666	exon25	c.C8900T	p.P2967L	GTTTCCCTGGCCA	.	45	16	61	0	.	24	T	6579425	C	T	6579425	3	4	80	1	0	0	0	0	1	0	0	0	4668	681	24	3	8999	3	DNHD1	11	6579425	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10		6579425	128427091	74	10553											
MYOD1	4654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	17742472	17742472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYOD1	NM_002478	exon2	c.C654A	p.S218R	CCCGAGCGGCGCC	.	40	24	41	0	.	154	A	17742472	C	A	17742472	3	1	80	1	0	0	0	0	1	0	0	0	10088	767	27	1	660	1	MYOD1	11	17742472	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	11163047	17742472	117264044	75	10554											
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	31482231	31482232	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IMMP1L	NM_144981	exon4	c.136_137insT	p.Q46fs	AATTTTGAATTGT	.	285	109	390	0	.	90	A	31482232	-	A	31482231	7	5	80	1	0	1	1	0	0	0	0	0	7716	1299	45	0	380	0	IMMP1L	11	31482231	Frame_Shift_Ins	INS	-	TCGA-DD-A3A7-01A-11D-A22F-10	13739759	31482231	103524285	76	10555											
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	56000436	56000441	+	In_Frame_Del	DEL	AGAGGT	AGAGGT	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AGAGGT	AGAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T2	NM_001004746	exon1	c.221_226del	p.74_76del	GAGTGAAGAGGTA	.	75	19	126	0	.	70	-	56000441	AGAGGT	-	56000436	7	5	80	1	0	1	0	1	0	0	0	0	11182	72	3	0	852	0	OR5T2	11	56000436	In_Frame_Del	DEL	AGAGGT	TCGA-DD-A3A7-01A-11D-A22F-10	24518205	56000436	79006080	77	10556											
OR5T3	390154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56019970	56019970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T3	NM_001004747	exon1	c.T295A	p.L99M	TCATTCTTGGATG	.	155	61	284	0	.	68	A	56019970	T	A	56019970	3	1	80	1	0	0	0	0	1	0	0	0	11183	1606	56	4	297	4	OR5T3	11	56019970	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	19534	56019970	78986546	78	10557											
OR9Q1	219956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57947370	57947370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR9Q1	NM_001005212	exon3	c.G454T	p.G152C	GTTGCTGGTCTCA	.	150	58	225	1	.	69	T	57947370	G	T	57947370	3	4	80	1	0	0	0	0	1	0	0	0	11255	1348	47	3	456	3	OR9Q1	11	57947370	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	1927400	57947370	77059146	79	10558											
SLC29A2	3177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66135010	66135010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC29A2	NM_001532	exon7	c.C658T	p.R220C	AGTAGCGGGCAAA	.	84	30	97	0	.	91	A	66135010	G	A	66135010	3	1	80	1	0	0	0	0	1	0	0	0	14535	1116	39	1	736	1	SLC29A2	11	66135010	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	8187640	66135010	68871506	80	10559											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063257	76063257	+	Missense_Mutation	SNP	T	T	C	rs148924079		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRKRIR	NM_004705	exon5	c.A937G	p.M313V	TTATCATAGTGTG	.	347	129	425	0	T|1.000;C|0.000	93	C	76063257	T	C	76063257	3	2	80	1	0	0	0	0	1	0	0	0	12526	1406	49	2	1352	2	PRKRIR	11	76063257	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	9928247	76063257	58943259	81	10560											
USP35	57558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77920573	77920573	+	Missense_Mutation	SNP	C	C	A	rs202205531	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP35	NM_020798	exon10	c.C1672A	p.P558T	GAGGAGCCCCCGG	.	93	38	96	0	C|0.999;T|0.001	637	A	77920573	C	A	77920573	3	1	80	1	0	0	0	0	1	0	0	0	17063	739	26	3	1706	3	USP35	11	77920573	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	1857316	77920573	57085943	82	10561											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105789505	105789505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRIA4	NM_001077243	exon11	c.A1337G	p.Y446C	AAGGATACTGTGT	.	81	32	121	0	.	230	G	105789505	A	G	105789505	3	3	80	1	0	0	0	0	1	0	0	0	6770	391	14	2	1412	2	GRIA4	11	105789505	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	27868932	105789505	29217011	83	10562											
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108064705	108064714	+	Frame_Shift_Del	DEL	ACTCATTTAA	ACTCATTTAA	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	ACTCATTTAA	ACTCATTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPAT	NM_002519	exon3	c.187_196del	p.63_66del	CTACATACTCATT	.	201	55	275	0	.	117	-	108064714	ACTCATTTAA	-	108064705	7	5	80	1	0	1	0	1	0	0	0	0	10566	391	14	0	4151	0	NPAT	11	108064705	Frame_Shift_Del	DEL	ACTCATTTAA	TCGA-DD-A3A7-01A-11D-A22F-10	2275200	108064705	26941811	84	10563											
DIXDC1	85458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111851539	111851539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DIXDC1	.	.	.	.	ATTTTGTGATTAT	.	73	34	114	0	.	91	C	111851539	T	C	111851539	3	2	80	1	0	0	0	0	1	0	0	0	4541	1696	59	2	783	2	DIXDC1	11	111851539	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	3786834	111851539	23154977	85	10564											
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122931847	122931847	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HSPA8	NM_006597	exon2	c.C186T	p.N62N	GGTGGGGTTCATT	.	44	6	62	0	.	654	A	122931847	G	A	122931847	2	1	80	1	0	0	0	0	0	0	0	1	7416	1252	44	3		3	HSPA8	11	122931847	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	11080308	122931847	12074669	86	10565											
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134158769	134158769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLB1L3	NM_001080407	exon7	c.G714A	p.M238I	ATACATGCCGTAT	.	28	11	38	0	.	69	A	134158769	G	A	134158769	3	1	80	1	0	0	0	0	1	0	0	0	6430	1319	46	3	740	3	GLB1L3	11	134158769	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	11226922	134158769	847747	87	10566											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6973284	6973284	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP5	NM_001098536	exon17	c.T2169G	p.P723P	CCCCCCTCCTGAG	.	21	14	73	0	.	659	G	6973284	T	G	6973284	2	3	80	1	0	0	0	0	0	0	0	1	17078	1538	54	5		5	USP5	12	6973284	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		6973284	126878611	88	10567											
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14631250	14631251	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	CTAACAGACCCCA	.	39	24	100	0	.	.	TC	14631251	GA	TC	14631250	3	4	80	1	0	0	0	0	1	0	0	0	1087	956	33	3	2983	3	ATF7IP	12	14631250	Missense_Mutation	DNP	GA	TCGA-DD-A3A7-01A-11D-A22F-10	7657966	14631250	119220645	89	10568											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	40687370	40687370	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRRK2	NM_198578	exon21	c.A2713T	p.K905X	CTTGTGAAAAAGA	.	138	101	118	0	.	533	T	40687370	A	T	40687370	4	4	80	1	0	0	0	0	0	1	0	0	9033	247	9	4	2795	4	LRRK2	12	40687370	Nonsense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	26056120	40687370	93164525	90	10569											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41957413	41957413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PDZRN4	NM_001164595	exon8	c.A1429G	p.K477E	GAGTGTAAGAGAA	.	98	66	93	0	.	296	G	41957413	A	G	41957413	3	3	80	1	0	0	0	0	1	0	0	0	11710	363	13	2	1532	2	PDZRN4	12	41957413	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	1270043	41957413	91894482	91	10570											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49416062	49416062	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL2	NM_003482	exon53	c.16412+1G>T	.	CTCTCACCTGGCA	.	87	18	66	0	.	612	A	49416062	C	A	49416062	5	1	80	1	0	0	0	0	0	0	1	0	9621	521	18	3	212	3	MLL2	12	49416062	Splice_Site	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	7458649	49416062	84435833	92	10571											
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113304627	113304627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RPH3A	NM_001143854	exon7	c.C426G	p.I142M	CAAAATCTGCATT	.	60	12	60	0	.	519	G	113304627	C	G	113304627	3	3	80	1	0	0	0	0	1	0	0	0	13551	903	32	4	444	4	RPH3A	12	113304627	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	63888565	113304627	20547268	93	10572											
SCARB1	949	ucsc.edu;bcgsc.ca	37	12	125271992	125271992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SCARB1	NM_005505	exon10	c.A1214G	p.K405R	TCAATCTTCCCAG	.	45	4	39	0	.	226	C	125271992	T	C	125271992	3	2	80	1	0	0	0	0	1	0	0	0	13881	1609	56	2	451	2	SCARB1	12	125271992	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	11967365	125271992	8579903	94	10573											
TUBA3C	7278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	19748160	19748160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TUBA3C	NM_006001	exon5	c.A1196G	p.Y399C	TTGGCATACATGA	.	108	34	94	1	.	95	C	19748160	T	C	19748160	3	2	80	1	0	0	0	0	1	0	0	0	16743	1406	49	2	160	2	TUBA3C	13	19748160	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		19748160	95421718	95	10574											
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33681023	33681023	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STARD13	NM_178006	exon13	c.C3096G	p.L1032L	CACGGAGAGGGAC	.	60	15	99	0	.	94	C	33681023	G	C	33681023	2	2	80	1	0	0	0	0	0	0	0	1	15255	929	33	4		4	STARD13	13	33681023	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	13932863	33681023	81488855	96	10575											
WDFY2	115825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52301872	52301872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WDFY2	NM_052950	exon6	c.C544A	p.L182I	ACAATCCTCAAAC	.	62	14	64	0	.	90	A	52301872	C	A	52301872	3	1	80	1	0	0	0	0	1	0	0	0	17266	681	24	3	566	3	WDFY2	13	52301872	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	18620849	52301872	62868006	97	10576											
MYCBP2	23077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77740568	77740568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYCBP2	NM_015057	exon41	c.A6236G	p.Y2079C	GGTCCATATCCTG	.	168	46	138	1	.	236	C	77740568	T	C	77740568	3	2	80	1	0	0	0	0	1	0	0	0	10018	1406	49	2	7972	2	MYCBP2	13	77740568	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	25438696	77740568	37429310	98	10577											
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111927941	111927941	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ARHGEF7	NM_001113511	exon13	c.C1398A	p.I466I	AGCCATCCGGAAC	.	118	32	117	0	.	232	A	111927941	C	A	111927941	2	1	80	1	0	0	0	0	0	0	0	1	911	845	30	3		3	ARHGEF7	13	111927941	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	34187373	111927941	3241937	99	10578											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67346716	67346716	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GPHN	NM_001024218	exon5	c.A354T	p.G118G	GATGGGATCACTT	.	42	29	118	0	.	228	T	67346716	A	T	67346716	2	4	80	1	0	0	0	0	0	0	0	1	6610	320	12	4		4	GPHN	14	67346716	Silent	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10		67346716	40002824	100	10579											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	51839582	51839582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DMXL2	NM_001174117	exon7	c.G591A	p.W197X	AGGATACCACACT	.	67	14	72	0	.	99	T	51839582	C	T	51839582	4	4	80	1	0	0	0	0	0	1	0	0	4595	508	18	3	8670	3	DMXL2	15	51839582	Nonsense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10		51839582	50691810	101	10580											
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63419842	63419842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LACTB	NM_171846	exon4	c.T906G	p.I302M	TTCAATTGAATCC	.	101	42	131	0	.	90	G	63419842	T	G	63419842	3	3	80	1	0	0	0	0	1	0	0	0	8597	1800	63	5	920	5	LACTB	15	63419842	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	11580260	63419842	39111550	102	10581											
TLE3	7090	broad.mit.edu;bcgsc.ca	37	15	70343755	70343755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TLE3	NM_005078	exon19	c.C2186T	p.T729M	TAAGGCGTCCTCC	.	60	4	93	0	.	522	A	70343755	G	A	70343755	3	1	80	1	0	0	0	0	1	0	0	0	15937	1145	40	1	140	1	TLE3	15	70343755	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	6923913	70343755	32187637	103	10582											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72338583	72338583	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYO9A	NM_006901	exon2	c.A322C	p.R108R	TCTCTCTCAGAAG	.	101	47	105	0	.	93	G	72338583	T	G	72338583	2	3	80	1	0	0	0	0	0	0	0	1	10084	1559	54	5		5	MYO9A	15	72338583	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	1994828	72338583	30192809	104	10583											
LMF1	64788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	904604	904604	+	Missense_Mutation	SNP	G	G	T	rs201312320	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LMF1	NM_022773	exon11	c.C1632A	p.F544L	CGGAGGGAAGTAG	.	34	16	36	0	G|0.998;A|0.002	90	T	904604	G	T	904604	3	4	80	1	0	0	0	0	1	0	0	0	8845	1165	41	3	75	3	LMF1	16	904604	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10		904604	89450149	105	10584											
PPL	5493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4935181	4935181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PPL	NM_002705	exon22	c.T3475C	p.W1159R	AGGCCCATATCTT	.	68	25	117	0	.	95	G	4935181	A	G	4935181	3	3	80	1	0	0	0	0	1	0	0	0	12334	217	8	2	1799	2	PPL	16	4935181	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	4030577	4935181	85419572	106	10585											
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5108602	5108602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C16orf89	NM_001098514	exon4	c.C519G	p.S173R	CTCGCTGCTGTCC	.	28	9	20	0	.	92	C	5108602	G	C	5108602	3	2	80	1	0	0	0	0	1	0	0	0	1842	1310	46	4	844	4	C16orf89	16	5108602	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	173421	5108602	85246151	107	10586											
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23646316	23646316	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PALB2	NM_024675	exon4	c.A1551G	p.K517K	GGCTGATTTTCTT	.	133	58	153	0	.	1351	C	23646316	T	C	23646316	2	2	80	1	0	0	0	0	0	0	0	1	11406	1490	52	2		2	PALB2	16	23646316	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	18537714	23646316	66708437	108	10587											
ABCC11	85320	ucsc.edu;bcgsc.ca	37	16	48242358	48242358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ABCC11	NM_033151	exon11	c.T1658C	p.L553P	GACAACAGGCTGC	.	35	4	55	0	.	95	G	48242358	A	G	48242358	3	3	80	1	0	0	0	0	1	0	0	0	51	188	7	2	2566	2	ABCC11	16	48242358	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	24596042	48242358	42112395	109	10588											
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57054706	57054706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NLRC5	NM_032206	exon2	c.C82A	p.L28M	GAATGGCTGAACG	.	55	14	73	0	.	159	A	57054706	C	A	57054706	3	1	80	1	0	0	0	0	1	0	0	0	10470	796	28	3	84	3	NLRC5	16	57054706	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	8812348	57054706	33300047	110	10589											
TPPP3	51673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67424967	67424967	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TPPP3	NM_016140	exon3	c.G48A	p.K16K	GGCAAACTTGCGG	.	57	13	68	0	.	90	T	67424967	C	T	67424967	2	4	80	1	0	0	0	0	0	0	0	1	16412	564	20	3		3	TPPP3	16	67424967	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	10370261	67424967	22929786	111	10590											
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74487222	74487222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLG1	NM_001145667	exon26	c.C3383T	p.A1128V	CCATCTGCTGGGG	.	94	39	108	0	.	136	A	74487222	G	A	74487222	3	1	80	1	0	0	0	0	1	0	0	0	6436	1319	46	3	240	3	GLG1	16	74487222	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	7062255	74487222	15867531	112	10591											
YWHAE	7531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1264424	1264424	+	Missense_Mutation	SNP	G	G	T	rs148760302	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	YWHAE	NM_006761	exon4	c.C540A	p.F180L	GTAGTAGAATACG	.	49	35	104	0	G|1.000;A|0.000	659	T	1264424	G	T	1264424	3	4	80	1	0	0	0	0	1	0	0	0	17499	933	33	3	239	3	YWHAE	17	1264424	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10		1264424	79930786	113	10592											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578525	7578525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C405A	p.C135X	CAGTTGGCAAAAC	.	22	16	38	0	.	70225	T	7578525	G	T	7578525	4	4	80	1	0	0	0	0	0	1	0	0	16378	1195	42	3	893	3	TP53	17	7578525	Nonsense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	6314101	7578525	73616685	114	10593											
GGNBP2	79893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34935776	34935776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GGNBP2	NM_024835	exon8	c.A947T	p.K316M	GGCAGAAGCTACG	.	197	39	114	0	.	70	T	34935776	A	T	34935776	3	4	80	1	0	0	0	0	1	0	0	0	6359	72	3	4	973	4	GGNBP2	17	34935776	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	27357251	34935776	46259434	115	10594											
KRTAP4-2	85291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39334360	39334360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP4-2	NM_033062	exon1	c.C57G	p.N19K	GCAGCAGTTCTCT	.	144	38	112	0	.	44	C	39334360	G	C	39334360	3	2	80	1	0	0	0	0	1	0	0	0	8551	1020	36	4	357	4	KRTAP4-2	17	39334360	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	4398584	39334360	41860850	116	10595											
BECN1	8678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40962923	40962923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BECN1	NM_003766	exon12	c.T1208C	p.I403T	TCTTCAATCTTGC	.	47	32	43	0	.	228	G	40962923	A	G	40962923	3	3	80	1	0	0	0	0	1	0	0	0	1396	101	4	2	148	2	BECN1	17	40962923	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	1628563	40962923	40232287	117	10596											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7906552	7906552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PTPRM	NM_001105244	exon4	c.A518C	p.D173A	CTATCGATGAGGT	.	170	57	202	0	.	228	C	7906552	A	C	7906552	3	2	80	1	0	0	0	0	1	0	0	0	12806	333	12	5	532	5	PTPRM	18	7906552	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10		7906552	70170696	118	10597											
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65178248	65178248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DSEL	NM_032160	exon2	c.A3628T	p.T1210S	TCAGAGTCCAGCA	.	104	36	140	0	.	157	A	65178248	T	A	65178248	3	1	80	1	0	0	0	0	1	0	0	0	4775	1667	58	4	44	4	DSEL	18	65178248	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	57271696	65178248	12899000	119	10598											
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15367957	15367957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRD4	NM_058243	exon8	c.A1369T	p.M457L	CCGGCATCTTGGC	.	25	8	30	0	.	767	A	15367957	T	A	15367957	3	1	80	1	0	0	0	0	1	0	0	0	1504	1435	50	4	2786	4	BRD4	19	15367957	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		15367957	43761026	120	10599											
LGALS4	3960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39297124	39297124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LGALS4	NM_006149	exon4	c.G451A	p.G151R	GGCCTCCGATGAA	.	76	8	88	0	.	92	T	39297124	C	T	39297124	3	4	80	1	0	0	0	0	1	0	0	0	8745	661	23	1	548	1	LGALS4	19	39297124	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	23929167	39297124	19831859	121	10600											
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42224926	42224926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CEACAM5	NM_004363	exon8	c.C1856T	p.S619F	CGGCCTCTAACCC	.	161	71	189	0	.	92	T	42224926	C	T	42224926	3	4	80	1	0	0	0	0	1	0	0	0	3195	913	32	3	1886	3	CEACAM5	19	42224926	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	2927802	42224926	16904057	122	10601											
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44681511	44681511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001032372	exon6	c.A2096G	p.Y699C	AACCATATAAATG	.	89	44	115	0	.	.	G	44681511	A	G	44681511	3	3	80	1	0	0	0	0	1	0	0	0	17777	449	16	2	2164	2	ZNF226	19	44681511	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	2456585	44681511	14447472	123	10602											
KIR2DL3	3804	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55253485	55253485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KIR2DL3	NM_015868	exon3	c.A130G	p.T44A	GAAGAGACAGTCA	.	52	46	44	0	.	92	G	55253485	A	G	55253485	3	3	80	1	0	0	0	0	1	0	0	0	8317	275	10	2	140	2	KIR2DL3	19	55253485	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	10571974	55253485	3875498	124	10603											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8698371	8698371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLCB1	NM_015192	exon14	c.A1389T	p.K463N	AATTTTGGTGAAA	.	47	17	71	0	.	297	T	8698371	G	T	8698371	3	4	80	1	0	0	0	0	1	0	0	0	12027	1339	47	3	1443	3	PLCB1	20	8698371	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10		8698371	54327149	125	10604											
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34312495	34312495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RBM39	NM_184234	exon8	c.A684G	p.S228S	TACCTGTGATGCC	.	119	71	94	0	.	91	C	34312495	T	C	34312495	2	2	80	1	0	0	0	0	0	0	0	1	13133	1683	59	2		2	RBM39	20	34312495	Silent	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	25614124	34312495	28713025	126	10605											
GTSF1L	149699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42355239	42355239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GTSF1L	NM_001008901	exon1	c.G96C	p.K32N	GGGGTTCTTTCTC	.	145	37	105	0	.	90	G	42355239	C	G	42355239	3	3	80	1	0	0	0	0	1	0	0	0	6887	912	32	4	354	4	GTSF1L	20	42355239	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	8042744	42355239	20670281	127	10606											
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	50048694	50048694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NFATC2	NM_012340	exon9	c.G2632A	p.G878R	GGGGTCCGTTTTT	.	155	11	169	0	.	92	T	50048694	C	T	50048694	3	4	80	1	0	0	0	0	1	0	0	0	10362	661	23	1	201	1	NFATC2	20	50048694	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	7693455	50048694	12976826	128	10607											
STX16	8675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57251326	57251326	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STX16	NM_001001433	exon9	c.C957T	p.L319L	TGTCCTCGTTGGC	.	202	54	195	0	.	91	T	57251326	C	T	57251326	2	4	80	1	0	0	0	0	0	0	0	1	15338	871	31	1		1	STX16	20	57251326	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	7202632	57251326	5774194	129	10608											
HRH3	11255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60791849	60791849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRH3	NM_007232	exon3	c.C551G	p.P184R	CCCTCGGGGATGG	.	65	16	68	0	.	90	C	60791849	G	C	60791849	3	2	80	1	0	0	0	0	1	0	0	0	7357	1232	43	4	790	4	HRH3	20	60791849	Missense_Mutation	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	3540523	60791849	2233671	130	10609											
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40627715	40627715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRWD1	NM_018963	exon19	c.A2111G	p.N704S	CCAATATTTGGAG	.	30	7	85	0	.	94	C	40627715	T	C	40627715	3	2	80	1	0	0	0	0	1	0	0	0	1525	1493	52	2	5186	2	BRWD1	21	40627715	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10		40627715	7502180	131	10610											
PRDM15	63977	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43241421	43241421	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM15	NM_001040424	exon17	c.2171+2T>G	.	GGCCTCACTTCTG	.	29	10	74	2	.	90	C	43241421	A	C	43241421	5	2	80	1	0	0	0	0	0	0	1	0	12456	173	6	5	1399	5	PRDM15	21	43241421	Splice_Site	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10	2613706	43241421	4888474	132	10611											
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46021639	46021639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_198689	exon2	c.C1103T	p.S368F	AGAAGTCCAGCTG	.	30	12	70	0	.	.	T	46021639	C	T	46021639	3	4	80	1	0	0	0	0	1	0	0	0	8514	855	30	3	1109	3	KRTAP10-7	21	46021639	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	2780218	46021639	2108256	133	10612											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24564464	24564464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CABIN1	NM_001199281	exon33	c.A5732G	p.H1911R	AGGTCCATCTTGG	.	23	19	96	0	.	94	G	24564464	A	G	24564464	3	3	80	1	0	0	0	0	1	0	0	0	2528	217	8	2	5858	2	CABIN1	22	24564464	Missense_Mutation	SNP	A	TCGA-DD-A3A7-01A-11D-A22F-10		24564464	26740102	134	10613											
AP1B1	162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29724846	29724846	+	Silent	SNP	G	G	A	rs147684584		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AP1B1	NM_001127	exon23	c.C2814T	p.H938H	GTACACGTGCTGG	.	35	16	52	0	G|1.000;A|0.000	92	A	29724846	G	A	29724846	2	1	80	1	0	0	0	0	0	0	0	1	731	1136	40	1		1	AP1B1	22	29724846	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	5160382	29724846	21579720	135	10614											
CELSR1	9620	hgsc.bcm.edu;bcgsc.ca	37	22	46807621	46807621	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CELSR1	NM_014246	exon6	c.G4647A	p.P1549P	CCCGGACGGCCCA	.	39	13	57	0	.	525	T	46807621	C	T	46807621	2	4	80	1	0	0	0	0	0	0	0	1	3221	523	19	1		1	CELSR1	22	46807621	Silent	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	17082775	46807621	4496945	136	10615											
REPS2	9185	broad.mit.edu;bcgsc.ca	37	X	17156984	17156984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	REPS2	NM_004726	exon17	c.C1814T	p.S605F	GGCAGTCTTCCAA	.	75	4	114	0	.	131	T	17156984	C	T	17156984	3	4	80	1	0	0	0	0	1	0	0	0	13229	913	32	3	1880	3	REPS2	23	17156984	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10		17156984	138113576	137	10616											
NUDT10	170685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	51075989	51075989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUDT10	NM_153183	exon2	c.C172A	p.P58T	GAGGAGCCGGGCG	.	48	37	51	0	.	90	A	51075989	C	A	51075989	3	1	80	1	0	0	0	0	1	0	0	0	10726	739	26	3	174	3	NUDT10	23	51075989	Missense_Mutation	SNP	C	TCGA-DD-A3A7-01A-11D-A22F-10	33919005	51075989	104194571	138	10617											
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102332620	102332620	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NXF3	NM_022052	exon18	c.C1506G	p.T502T	ACTCTGGGTCCCT	.	38	30	62	0	.	205	C	102332620	G	C	102332620	2	2	80	1	0	0	0	0	0	0	0	1	10785	1219	43	4		4	NXF3	23	102332620	Silent	SNP	G	TCGA-DD-A3A7-01A-11D-A22F-10	51256631	102332620	52937940	139	10618											
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153278076	153278076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IRAK1	NM_001569	exon13	c.A1984G	p.I662V	GGTTGATGATAAT	.	59	16	68	0	.	1074	C	153278076	T	C	153278076	3	2	80	1	0	0	0	0	1	0	0	0	7821	1464	51	2	162	2	IRAK1	23	153278076	Missense_Mutation	SNP	T	TCGA-DD-A3A7-01A-11D-A22F-10	50945456	153278076	1992484	140	10619											
TTLL10	254173	ucsc.edu;bcgsc.ca	37	1	1118288	1118288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTLL10	NM_001130045	exon11	c.T949C	p.S317P	ACAGCCTCCAACC	.	37	4	42	0	.	153	C	1118288	T	C	1118288	3	2	81	1	0	0	0	0	1	0	0	0	16720	1551	54	2	979	2	TTLL10	1	1118288	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10		1118288	248132333	1	10620											
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6145274	6145274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KCNAB2	NM_001199862	exon6	c.G391A	p.V131I	GAAGTGGTACTGG	.	141	52	84	0	.	514	A	6145274	G	A	6145274	3	1	81	1	0	0	0	0	1	0	0	0	8010	1261	44	3	314	3	KCNAB2	1	6145274	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	5026986	6145274	243105347	2	10621											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16255449	16255449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SPEN	NM_015001	exon11	c.A2714G	p.N905S	TTGATAATGACAC	.	101	25	93	0	.	298	G	16255449	A	G	16255449	3	3	81	1	0	0	0	0	1	0	0	0	15037	101	4	2	2756	2	SPEN	1	16255449	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	10110175	16255449	232995172	3	10622											
SDHB	6390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17354296	17354296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SDHB	NM_003000	exon5	c.C488T	p.S163F	TCCTGAGATTCAT	.	91	35	108	0	.	658	A	17354296	G	A	17354296	3	1	81	1	0	0	0	0	1	0	0	0	13965	942	33	3	370	3	SDHB	1	17354296	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	1098847	17354296	231896325	4	10623											
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17942680	17942680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ARHGEF10L	NM_018125	exon9	c.A818G	p.H273R	TCCTGCACAGGAA	.	139	51	98	0	.	292	G	17942680	A	G	17942680	3	3	81	1	0	0	0	0	1	0	0	0	895	159	6	2	848	2	ARHGEF10L	1	17942680	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	588384	17942680	231307941	5	10624											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	39906750	39906750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MACF1	NM_012090	exon70	c.G12346A	p.A4116T	ATTTTTGCCTGTG	.	161	11	155	0	.	165	A	39906750	G	A	39906750	3	1	81	1	0	0	0	0	1	0	0	0	9144	1319	46	3	18771	3	MACF1	1	39906750	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	21964070	39906750	209343871	6	10625											
SLC2A1	6513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43394606	43394606	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC2A1	NM_006516	exon8	c.G1071T	p.L357L	CACCAGCAGTGCT	.	55	19	42	0	.	94	A	43394606	C	A	43394606	2	1	81	1	0	0	0	0	0	0	0	1	14538	697	25	3		3	SLC2A1	1	43394606	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	3487856	43394606	205856015	7	10626											
YIPF1	54432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54332448	54332448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	YIPF1	NM_018982	exon8	c.A631G	p.I211V	TATAAATGAAGAG	.	99	14	68	0	.	154	C	54332448	T	C	54332448	3	2	81	1	0	0	0	0	1	0	0	0	17474	1464	51	2	301	2	YIPF1	1	54332448	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	10937842	54332448	194918173	8	10627											
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67356850	67356850	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WDR78	NM_207014	exon4	c.G630A	p.L210L	ACTAGTCAATCTT	.	119	43	106	0	.	92	T	67356850	C	T	67356850	2	4	81	1	0	0	0	0	0	0	0	1	17325	825	29	3		3	WDR78	1	67356850	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	13024402	67356850	181893771	9	10628											
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	68903877	68903877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RPE65	NM_000329	exon10	c.T1121C	p.I374T	TTGTCAATATTCA	.	112	11	89	0	.	91	G	68903877	A	G	68903877	3	3	81	1	0	0	0	0	1	0	0	0	13545	101	4	2	500	2	RPE65	1	68903877	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	1547027	68903877	180346744	10	10629											
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89583374	89583374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GBP2	NM_004120	exon5	c.A511C	p.S171R	AAAAGCTCACAAA	.	263	109	260	0	.	91	G	89583374	T	G	89583374	3	3	81	1	0	0	0	0	1	0	0	0	6274	1551	54	5	1292	5	GBP2	1	89583374	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	20679497	89583374	159667247	11	10630											
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97564053	97564053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DPYD	NM_000110	exon21	c.A2758G	p.T920A	TGATGGTAGGAAT	.	160	40	148	0	.	278	C	97564053	T	C	97564053	3	2	81	1	0	0	0	0	1	0	0	0	4745	1638	57	2	331	2	DPYD	1	97564053	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	7980679	97564053	151686568	12	10631											
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115143496	115143496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DENND2C	NM_001256404	exon14	c.C1901A	p.P634Q	GGAGCTGGGAAAG	.	95	27	112	0	.	229	T	115143496	G	T	115143496	3	4	81	1	0	0	0	0	1	0	0	0	4430	1348	47	3	917	3	DENND2C	1	115143496	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	17579443	115143496	134107125	13	10632											
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120266059	120266059	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PHGDH	NM_006623	exon3	c.G351C	p.L117L	GTGCCTGGCCAGG	.	122	50	113	0	.	91	C	120266059	G	C	120266059	2	2	81	1	0	0	0	0	0	0	0	1	11841	1335	47	4		4	PHGDH	1	120266059	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	5122563	120266059	128984562	14	10633											
NES	10763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156641759	156641759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NES	NM_006617	exon4	c.C2221A	p.H741N	ATTTGTGATTCTC	.	267	144	133	0	.	520	T	156641759	G	T	156641759	3	4	81	1	0	0	0	0	1	0	0	0	10337	1290	45	3	2648	3	NES	1	156641759	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	36375700	156641759	92608862	15	10634											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204378958	204378958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPP1R15B	NM_032833	exon1	c.A1582C	p.S528R	GAAGGCTTCCAGA	.	124	69	90	0	.	652	G	204378958	T	G	204378958	3	3	81	1	0	0	0	0	1	0	0	0	12364	1609	56	5	567	5	PPP1R15B	1	204378958	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	47737199	204378958	44871663	16	10635											
PIGR	5284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207103702	207103702	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PIGR	NM_002644	exon11	c.C2256T	p.T752T	GGCCACGGTGCTG	.	82	43	43	1	.	92	A	207103702	G	A	207103702	2	1	81	1	0	0	0	0	0	0	0	1	11897	1103	39	1		1	PIGR	1	207103702	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	2724744	207103702	42146919	17	10636											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237586488	237586488	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RYR2	NM_001035	exon12	c.A945T	p.L315L	CCTTCTACTCATG	.	429	27	243	0	.	158	T	237586488	A	T	237586488	2	4	81	1	0	0	0	0	0	0	0	1	13769	378	14	4		4	RYR2	1	237586488	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	30482786	237586488	11664133	18	10637											
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248308490	248308490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR2M5	NM_001004690	exon1	c.T41C	p.L14P	TCATCCTCCTGGG	.	329	177	201	0	.	71	C	248308490	T	C	248308490	3	2	81	1	0	0	0	0	1	0	0	0	11013	1551	54	2	43	2	OR2M5	1	248308490	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	10722002	248308490	942131	19	10638											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926593	1926593	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYT1L	NM_015025	exon10	c.G948A	p.E316E	GCTCTCCTCCACC	.	164	45	179	0	.	95	T	1926593	C	T	1926593	2	4	81	1	0	0	0	0	0	0	0	1	10107	680	24	3		3	MYT1L	2	1926593	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10		1926593	241272780	20	10639											
ADI1	55256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3504718	3504718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ADI1	NM_018269	exon3	c.G287T	p.R96L	ATGTAGCGGATCT	.	66	32	62	0	.	91	A	3504718	C	A	3504718	3	1	81	1	0	0	0	0	1	0	0	0	315	768	27	1	260	1	ADI1	2	3504718	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	1578125	3504718	239694655	21	10640											
ITGB1BP1	9270	broad.mit.edu;bcgsc.ca	37	2	9552533	9552533	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ITGB1BP1	NM_004763	exon4	c.A153G	p.G51G	GCTTTGTCCTGAA	.	40	4	36	0	.	130	C	9552533	T	C	9552533	2	2	81	1	0	0	0	0	0	0	0	1	7891	1681	58	2		2	ITGB1BP1	2	9552533	Silent	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	6047815	9552533	233646840	22	10641											
C2orf48	348738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10350626	10350626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	C2orf48	NM_182626	exon3	c.C383T	p.A128V	AGAGGGCGCTGGG	.	114	58	98	0	.	90	T	10350626	C	T	10350626	3	4	81	1	0	0	0	0	1	0	0	0	2170	768	27	1	393	1	C2orf48	2	10350626	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	798093	10350626	232848747	23	10642											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71591324	71591324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF638	NM_014497	exon5	c.A1659G	p.P553P	TAGTCCAAAATGC	.	142	58	113	0	.	94	G	71591324	A	G	71591324	2	3	81	1	0	0	0	0	0	0	0	1	18052	117	5	2		2	ZNF638	2	71591324	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	61240698	71591324	171608049	24	10643											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84832627	84832627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DNAH6	NM_001370	exon20	c.G3085A	p.E1029K	AAGGTGGAGGACT	.	132	40	122	0	.	69	A	84832627	G	A	84832627	3	1	81	1	0	0	0	0	1	0	0	0	4605	1175	41	3	3159	3	DNAH6	2	84832627	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	13241303	84832627	158366746	25	10644											
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88396264	88396264	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SMYD1	NM_198274	exon6	c.G849C	p.L283L	AAAACTGAAGGAT	.	88	32	84	0	.	229	C	88396264	G	C	88396264	2	2	81	1	0	0	0	0	0	0	0	1	14821	1277	45	4		4	SMYD1	2	88396264	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	3563637	88396264	154803109	26	10645											
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163029733	163029733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FAP	NM_004460	exon25	c.2035-2A>G	.	GAATTCTGGAAAA	.	205	66	173	0	.	93	C	163029733	T	C	163029733	5	2	81	1	0	0	0	0	0	0	1	0	5673	1594	55	2	261	2	FAP	2	163029733	Splice_Site	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	74633469	163029733	80169640	27	10646											
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163044766	163044766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FAP	NM_004460	exon20	c.G1727T	p.G576V	GCTGTTCCTCGAC	.	160	61	113	0	.	93	A	163044766	C	A	163044766	3	1	81	1	0	0	0	0	1	0	0	0	5673	855	30	3	583	3	FAP	2	163044766	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	15033	163044766	80154607	28	10647											
SCN3A	6328	ucsc.edu;bcgsc.ca	37	2	165947496	165947496	+	Missense_Mutation	SNP	G	G	T	rs200457036		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SCN3A	NM_006922	exon28	c.C5167A	p.P1723T	CGGGTGGTGCACT	.	267	90	240	2	G|0.999;T|0.000	141	T	165947496	G	T	165947496	3	4	81	1	0	0	0	0	1	0	0	0	13918	1261	44	3	839	3	SCN3A	2	165947496	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	2902730	165947496	77251877	29	10648											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179415808	179415808	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon336	c.A91450T	p.T30484S	GTCCTGTAACTGT	.	92	43	82	0	.	636	A	179415808	T	A	179415808	3	1	81	1	0	0	0	0	1	0	0	0	16732	1638	57	4	16637	4	TTN	2	179415808	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	13468312	179415808	63783565	30	10649											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179544137	179544137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon142	c.A33671T	p.E11224V	GGAACCTCAGGCA	.	216	27	167	0	.	636	A	179544137	T	A	179544137	3	1	81	1	0	0	0	0	1	0	0	0	16732	1551	54	4	70742	4	TTN	2	179544137	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	128329	179544137	63655236	31	10650											
NMUR1	10316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232392880	232392880	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NMUR1	NM_006056	exon2	c.G852A	p.R284R	CTGGAGCCTGCAG	.	73	29	60	0	.	523	T	232392880	C	T	232392880	2	4	81	1	0	0	0	0	0	0	0	1	10506	738	26	3		3	NMUR1	2	232392880	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	52848743	232392880	10806493	32	10651											
TOP2B	7155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25668097	25668097	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TOP2B	NM_001068	exon18	c.C2163T	p.L721L	TGAGAAGAGAATC	.	142	29	141	1	.	273	A	25668097	G	A	25668097	2	1	81	1	0	0	0	0	0	0	0	1	16363	929	33	3		3	TOP2B	3	25668097	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10		25668097	172354333	33	10652											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47037989	47037989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NBEAL2	NM_015175	exon16	c.G2380T	p.G794C	CGGTGGGGCAGCC	.	49	21	64	0	.	69	T	47037989	G	T	47037989	3	4	81	1	0	0	0	0	1	0	0	0	10189	1232	43	3	2442	3	NBEAL2	3	47037989	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	21369892	47037989	150984441	34	10653											
CSPG5	10675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47618819	47618819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CSPG5	NM_006574	exon2	c.G697C	p.G233R	AGGTTCCTGGTGA	.	85	26	67	0	.	91	G	47618819	C	G	47618819	3	3	81	1	0	0	0	0	1	0	0	0	3961	690	24	4	938	4	CSPG5	3	47618819	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	580830	47618819	150403611	35	10654											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78666831	78666831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ROBO1	NM_002941	exon27	c.G4236T	p.E1412D	AGCATACTCTGCC	.	88	28	73	0	.	67	A	78666831	C	A	78666831	3	1	81	1	0	0	0	0	1	0	0	0	13513	564	20	3	739	3	ROBO1	3	78666831	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	31048012	78666831	119355599	36	10655											
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101445524	101445524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEP97	NM_024548	exon2	c.G130T	p.D44Y	ATTCTGGATAAAA	.	77	18	61	0	.	70	T	101445524	G	T	101445524	3	4	81	1	0	0	0	0	1	0	0	0	3263	1174	41	3	136	3	CEP97	3	101445524	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	22778693	101445524	96576906	37	10656											
IL20RB	53833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136708320	136708320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IL20RB	NM_144717	exon4	c.T444C	p.D148D	CAAAGATGGCTTC	.	48	14	49	0	.	91	C	136708320	T	C	136708320	2	2	81	1	0	0	0	0	0	0	0	1	7669	1461	51	2		2	IL20RB	3	136708320	Silent	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	35262796	136708320	61314110	38	10657											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142275233	142275233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATR	NM_001184	exon9	c.G2070C	p.K690N	AAGAATCTTGGGA	.	134	43	146	0	.	1139	G	142275233	C	G	142275233	3	3	81	1	0	0	0	0	1	0	0	0	1204	912	32	4	6020	4	ATR	3	142275233	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	5566913	142275233	55747197	39	10658											
RSRC1	51319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157920990	157920990	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RSRC1	NM_016625	exon4	c.G450A	p.E150E	AAAGGAGAAGGAT	.	169	72	167	0	.	90	A	157920990	G	A	157920990	2	1	81	1	0	0	0	0	0	0	0	1	13714	933	33	3		3	RSRC1	3	157920990	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	15645757	157920990	40101440	40	10659											
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186281901	186281901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TBCCD1	NM_001134415	exon2	c.G218T	p.W73L	TAAAGCCACGCCA	.	61	24	51	0	.	108	A	186281901	C	A	186281901	3	1	81	1	0	0	0	0	1	0	0	0	15629	595	21	3	1479	3	TBCCD1	3	186281901	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	28360911	186281901	11740529	41	10660											
TMEM128	85013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4248025	4248025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TMEM128	NM_032927	exon2	c.T71G	p.L24R	ATATTAAGTCTTG	.	164	40	137	0	.	90	C	4248025	A	C	4248025	3	2	81	1	0	0	0	0	1	0	0	0	16038	72	3	5	366	5	TMEM128	4	4248025	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		4248025	186906251	42	10661											
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8621092	8621092	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CPZ	NM_001014447	exon11	c.C1707T	p.A569A	CCCCGCCCGGATG	.	193	76	172	0	.	93	T	8621092	C	T	8621092	2	4	81	1	0	0	0	0	0	0	0	1	3839	610	22	3		3	CPZ	4	8621092	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	4373067	8621092	182533184	43	10662											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20535249	20535249	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLIT2	NM_004787	exon18	c.A1743G	p.A581A	AGGAGCATCTGGT	.	505	188	449	0	.	521	G	20535249	A	G	20535249	2	3	81	1	0	0	0	0	0	0	0	1	14740	204	8	2		2	SLIT2	4	20535249	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	11914157	20535249	170619027	44	10663											
SEPSECS	51091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25156767	25156767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEPSECS	NM_016955	exon5	c.A554C	p.E185A	ACAGGCTCAAAAC	.	63	8	49	0	.	90	G	25156767	T	G	25156767	3	3	81	1	0	0	0	0	1	0	0	0	14058	1551	54	5	979	5	SEPSECS	4	25156767	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	4621518	25156767	165997509	45	10664											
PCDH7	5099	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30921951	30921951	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDH7	NM_032457	exon2	c.G3351A	p.T1117T	GACCACGCCGGAT	.	95	41	72	2	.	229	A	30921951	G	A	30921951	2	1	81	1	0	0	0	0	0	0	0	1	11516	1074	38	1		1	PCDH7	4	30921951	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	5765184	30921951	160232325	46	10665											
YIPF7	285525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	44637980	44637980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_182592	exon3	c.C311T	p.P104L	ATGTAAGGAGATT	.	140	8	98	0	.	.	A	44637980	G	A	44637980	3	1	81	1	0	0	0	0	1	0	0	0	17480	1000	35	3	547	3	YIPF7	4	44637980	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	13716029	44637980	146516296	47	10666											
CEP135	9662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	56831901	56831901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEP135	NM_025009	exon8	c.A920C	p.N307T	TCGTTAATTTAAG	.	157	12	139	1	.	94	C	56831901	A	C	56831901	3	2	81	1	0	0	0	0	1	0	0	0	3247	101	4	5	946	5	CEP135	4	56831901	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	12193921	56831901	134322375	48	10667											
DCK	1633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71889378	71889378	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DCK	NM_000788	exon4	c.A504G	p.Q168Q	TGGCCAAAGCCTT	.	229	22	170	0	.	116	G	71889378	A	G	71889378	2	3	81	1	0	0	0	0	0	0	0	1	4290	11	1	2		2	DCK	4	71889378	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	15057477	71889378	119264898	49	10668											
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73990739	73990739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKRD17	NM_032217	exon18	c.A3383G	p.H1128R	CCAACATGACCAG	.	115	43	114	0	.	234	C	73990739	T	C	73990739	3	2	81	1	0	0	0	0	1	0	0	0	646	1464	51	2	4496	2	ANKRD17	4	73990739	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	2101361	73990739	117163537	50	10669											
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	79832589	79832589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BMP2K	NM_198892	exon16	c.C2888T	p.T963M	AAATAACGGGGAG	.	289	27	239	0	.	383	T	79832589	C	T	79832589	3	4	81	1	0	0	0	0	1	0	0	0	1460	536	19	1	2988	1	BMP2K	4	79832589	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	5841850	79832589	111321687	51	10670											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	115792014	115792014	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NDST4	NM_022569	exon7	c.G1629A	p.W543X	GTTGGTCCAGCTC	.	234	22	201	0	.	94	T	115792014	C	T	115792014	4	4	81	1	0	0	0	0	0	1	0	0	10258	856	30	3	1021	3	NDST4	4	115792014	Nonsense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	35959425	115792014	75362262	52	10671											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149002507	149002507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NR3C2	NM_000901	exon9	c.C2943G	p.F981L	CCGGTGGAAGTAG	.	95	15	78	0	.	154	C	149002507	G	C	149002507	3	2	81	1	0	0	0	0	1	0	0	0	10631	1165	41	4	15	4	NR3C2	4	149002507	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	33210493	149002507	42151769	53	10672											
ESM1	11082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54281083	54281083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ESM1	NM_001135604	exon1	c.G263T	p.G88V	TCCTCCCCATTAG	.	85	16	79	0	.	90	A	54281083	C	A	54281083	3	1	81	1	0	0	0	0	1	0	0	0	5252	623	22	3	303	3	ESM1	5	54281083	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10		54281083	126634177	54	10673											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70766253	70766253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BDP1	NM_018429	exon7	c.G951T	p.M317I	CAGCATGGTAGGA	.	302	66	427	0	.	92	T	70766253	G	T	70766253	3	4	81	1	0	0	0	0	1	0	0	0	1395	1348	47	3	977	3	BDP1	5	70766253	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	16485170	70766253	110149007	55	10674											
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	112111380	112111380	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	APC	NM_001127511	exon4	c.C507G	p.Y169X	GTATTACGCTCAA	.	88	61	132	0	.	12026	G	112111380	C	G	112111380	4	3	81	1	0	0	0	0	0	1	0	0	763	547	19	4	491	4	APC	5	112111380	Nonsense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	41345127	112111380	68803880	56	10675											
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140347883	140347883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDHAC2	NM_031883	exon1	c.G1532A	p.R511K	TGGAGAGGGAGAT	.	204	18	113	0	.	26	A	140347883	G	A	140347883	3	1	81	1	0	0	0	0	1	0	0	0	11533	1000	35	3	1534	3	PCDHAC2	5	140347883	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	28236503	140347883	40567377	57	10676											
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070692	176070692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001099408	exon5	c.C253G	p.L85V	GACAACCTGCACC	.	83	42	73	0	.	.	G	176070692	C	G	176070692	3	3	81	1	0	0	0	0	1	0	0	0	5029	680	24	4	263	4	EIF4E1B	5	176070692	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	35722809	176070692	4844568	58	10677											
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180166444	180166444	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR2Y1	NM_001001657	exon1	c.C615T	p.V205V	AGCCACGACTATG	.	162	21	95	0	.	68	A	180166444	G	A	180166444	2	1	81	1	0	0	0	0	0	0	0	1	11035	1045	37	1		1	OR2Y1	5	180166444	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	4095752	180166444	748816	59	10678											
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36839559	36839559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPIL1	NM_016059	exon2	c.A146G	p.N49S	GTGCCATTGTAGT	.	292	153	175	0	.	91	C	36839559	T	C	36839559	3	2	81	1	0	0	0	0	1	0	0	0	12326	1493	52	2	366	2	PPIL1	6	36839559	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10		36839559	134275508	60	10679											
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43471363	43471363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TJAP1	NM_001146016	exon10	c.G498C	p.E166D	GTAGGAGCGGTAC	.	85	42	78	0	.	90	C	43471363	G	C	43471363	3	2	81	1	0	0	0	0	1	0	0	0	15925	962	34	4	524	4	TJAP1	6	43471363	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	6631804	43471363	127643704	61	10680											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64431532	64431532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYS	NM_001142800	exon43	c.C8395A	p.L2799I	CATCTAGATCCAG	.	330	35	229	0	.	660	T	64431532	G	T	64431532	3	4	81	1	0	0	0	0	1	0	0	0	5332	933	33	3	1043	3	EYS	6	64431532	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	20960169	64431532	106683535	62	10681											
EYS	346007	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	65767615	65767615	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYS	NM_001142800	exon13	c.C2029T	p.Q677X	CACATTGCGTACC	.	224	61	145	1	.	660	A	65767615	G	A	65767615	4	1	81	1	0	0	0	0	0	1	0	0	5332	1328	46	3	7374	3	EYS	6	65767615	Nonsense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	1336083	65767615	105347452	63	10682											
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87967391	87967391	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF292	NM_015021	exon8	c.G4044A	p.G1348G	CCGTGGGCGGGGC	.	86	52	143	0	.	72	A	87967391	G	A	87967391	2	1	81	1	0	0	0	0	0	0	0	1	17823	1190	42	3		3	ZNF292	6	87967391	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	22199776	87967391	83147676	64	10683											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160491064	160491064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IGF2R	NM_000876	exon31	c.C4417T	p.R1473X	ACCATCCGATTCA	.	39	5	66	0	.	118	T	160491064	C	T	160491064	4	4	81	1	0	0	0	0	0	1	0	0	7576	644	23	1	4539	1	IGF2R	6	160491064	Nonsense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	72523673	160491064	10624003	65	10684											
SLC22A1	6580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160543147	160543147	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC22A1	NM_153187	exon1	c.G180A	p.Q60Q	GAGCCAGCGCTGT	.	66	13	63	0	.	90	A	160543147	G	A	160543147	2	1	81	1	0	0	0	0	0	0	0	1	14440	962	34	3		3	SLC22A1	6	160543147	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	52083	160543147	10571920	66	10685											
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44609640	44609640	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DDX56	NM_019082	exon8	c.T1098A	p.P366P	GGCCTCAGGGGTT	.	64	20	75	0	.	227	T	44609640	A	T	44609640	2	4	81	1	0	0	0	0	0	0	0	1	4374	175	7	4		4	DDX56	7	44609640	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		44609640	114529023	67	10686											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82508658	82508658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon10	c.T13649C	p.M4550T	CCTTCCATAAGCT	.	157	67	168	0	.	29	G	82508658	A	G	82508658	3	3	81	1	0	0	0	0	1	0	0	0	11583	217	8	2	1860	2	PCLO	7	82508658	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	37899018	82508658	76630005	68	10687											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82582751	82582751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon5	c.C7518A	p.S2506R	AGGTTTGCTTGGC	.	88	13	91	0	.	29	T	82582751	G	T	82582751	3	4	81	1	0	0	0	0	1	0	0	0	11583	1310	46	3	8011	3	PCLO	7	82582751	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	74093	82582751	76555912	69	10688											
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91936908	91936908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKIB1	NM_019004	exon3	c.G424C	p.D142H	GCTGTTGATAACA	.	49	22	38	0	.	432	C	91936908	G	C	91936908	3	2	81	1	0	0	0	0	1	0	0	0	630	1290	45	4	430	4	ANKIB1	7	91936908	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	9354157	91936908	67201755	70	10689											
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124386785	124386785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GPR37	NM_005302	exon2	c.C1636G	p.P546A	GGACTGGGGTGAC	.	103	12	88	0	.	523	C	124386785	G	C	124386785	3	2	81	1	0	0	0	0	1	0	0	0	6691	1232	43	4	209	4	GPR37	7	124386785	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	32449877	124386785	34751878	71	10690											
EFHA2	286097	ucsc.edu;bcgsc.ca	37	8	16956032	16956032	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EFHA2	NM_181723	exon9	c.A954G	p.T318T	TAACACAAGCCAA	.	38	4	53	0	.	91	G	16956032	A	G	16956032	2	3	81	1	0	0	0	0	0	0	0	1	4944	117	5	2		2	EFHA2	8	16956032	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		16956032	129407990	72	10691											
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75233175	75233175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	JPH1	NM_020647	exon1	c.C348A	p.D116E	GTACCCGTCTTGC	.	59	9	26	0	.	91	T	75233175	G	T	75233175	3	4	81	1	0	0	0	0	1	0	0	0	7960	1136	40	1	1657	1	JPH1	8	75233175	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	58277143	75233175	71130847	73	10692											
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77895811	77895811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PEX2	NM_000318	exon4	c.G604A	p.E202K	GAAATTCAGCAAA	.	67	16	43	0	.	91	T	77895811	C	T	77895811	3	4	81	1	0	0	0	0	1	0	0	0	11745	835	29	3	317	3	PEX2	8	77895811	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	2662636	77895811	68468211	74	10693											
GEM	2669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	95272587	95272587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GEM	NM_181702	exon2	c.A145G	p.T49A	CAGGGGTAGCAGA	.	164	13	49	0	.	659	C	95272587	T	C	95272587	3	2	81	1	0	0	0	0	1	0	0	0	6329	1638	57	2	761	2	GEM	8	95272587	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	17376776	95272587	51091435	75	10694											
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	124382175	124382175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATAD2	NM_014109	exon7	c.G817C	p.D273H	CATCATCATCATC	.	315	18	134	0	.	92	G	124382175	C	G	124382175	3	3	81	1	0	0	0	0	1	0	0	0	1071	826	29	4	3443	4	ATAD2	8	124382175	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	29109588	124382175	21981847	76	10695											
PTP4A3	11156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	142441034	142441034	+	Missense_Mutation	SNP	C	C	A	rs145157893	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PTP4A3	NM_032611	exon5	c.C412A	p.R138S	AAGCGCCGCGGAG	.	63	14	25	0	C|1.000;T|0.000	226	A	142441034	C	A	142441034	3	1	81	1	0	0	0	0	1	0	0	0	12772	652	23	1	430	1	PTP4A3	8	142441034	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	18058859	142441034	3922988	77	10696											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14784488	14784488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FREM1	NM_144966	exon25	c.A4322G	p.Q1441R	TCGATCTGGCCAT	.	105	28	106	0	.	138	C	14784488	T	C	14784488	3	2	81	1	0	0	0	0	1	0	0	0	6044	1580	55	2	2323	2	FREM1	9	14784488	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10		14784488	126428943	78	10697											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320970	79320970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PRUNE2	NM_015225	exon8	c.G6220A	p.A2074T	TCTTAGCATCTAT	.	110	22	109	0	.	157	T	79320970	C	T	79320970	3	4	81	1	0	0	0	0	1	0	0	0	12641	710	25	3	3094	3	PRUNE2	9	79320970	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	64536482	79320970	61892461	79	10698											
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95147921	95147921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OGN	NM_033014	exon7	c.C878G	p.P293R	CCTATCGGTAATC	.	156	61	129	0	.	492	C	95147921	G	C	95147921	3	2	81	1	0	0	0	0	1	0	0	0	10846	1116	39	4	22	4	OGN	9	95147921	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	15826951	95147921	46065510	80	10699											
TDRD7	23424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100235830	100235830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TDRD7	NM_014290	exon11	c.C2001T	p.L667L	GACACTCTACTGC	.	102	36	90	0	.	93	T	100235830	C	T	100235830	2	4	81	1	0	0	0	0	0	0	0	1	15732	900	32	3		3	TDRD7	9	100235830	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	5087909	100235830	40977601	81	10700											
PSMB7	5695	broad.mit.edu;bcgsc.ca	37	9	127115964	127115964	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PSMB7	NM_002799	exon8	c.A747G	p.K249K	AGTCCCTTTCTCA	.	73	4	67	1	.	90	C	127115964	T	C	127115964	2	2	81	1	0	0	0	0	0	0	0	1	12682	1606	56	2		2	PSMB7	9	127115964	Silent	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	26880134	127115964	14097467	82	10701											
REXO4	57109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	136272149	136272151	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	REXO4	NM_020385	exon8	c.1195_1197del	p.399_399del	CCACTCCTTCTTC	.	52	13	40	0	.	90	-	136272151	CTT	-	136272149	7	5	81	1	0	1	0	1	0	0	0	0	13243	680	24	0	75	0	REXO4	9	136272149	In_Frame_Del	DEL	CTT	TCGA-DD-A3A8-01A-11D-A22F-10	9156185	136272149	4941282	83	10702											
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	69299302	69299302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CTNNA3	NM_001127384	exon4	c.G418C	p.D140H	TCATGTCCGCAAG	.	186	18	135	0	.	234	G	69299302	C	G	69299302	3	3	81	1	0	0	0	0	1	0	0	0	4014	855	30	4	2329	4	CTNNA3	10	69299302	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10		69299302	66235445	84	10703											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85970872	85970872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDHR1	NM_001171971	exon13	c.C1436A	p.A479D	ACGTTGCCAGGAT	.	58	20	41	0	.	91	A	85970872	C	A	85970872	3	1	81	1	0	0	0	0	1	0	0	0	3118	739	26	3	1486	3	CDHR1	10	85970872	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	16671570	85970872	49563875	85	10704											
DUSP5	1847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112262621	112262621	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DUSP5	NM_004419	exon2	c.T522C	p.Y174Y	AGCTTATGACCAG	.	104	40	93	0	.	659	C	112262621	T	C	112262621	2	2	81	1	0	0	0	0	0	0	0	1	4828	1471	51	2		2	DUSP5	10	112262621	Silent	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	26291749	112262621	23272126	86	10705											
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4621894	4621894	+	Missense_Mutation	SNP	C	C	T	rs139399398		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM68	NM_018073	exon7	c.G1070A	p.R357Q	TAGTGCCGGCCTG	.	118	53	118	0	C|1.000;T|0.000	91	T	4621894	C	T	4621894	3	4	81	1	0	0	0	0	1	0	0	0	16538	652	23	1	391	1	TRIM68	11	4621894	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10		4621894	130384622	87	10706											
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587787	55587787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR5D18	NM_001001952	exon1	c.A682G	p.K228E	ATCCTCAAGATGC	.	168	62	142	0	.	71	G	55587787	A	G	55587787	3	3	81	1	0	0	0	0	1	0	0	0	11157	131	5	2	684	2	OR5D18	11	55587787	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	50965893	55587787	79418729	88	10707											
OR5L2	26338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55595156	55595156	+	Silent	SNP	G	G	T	rs144734181	byfrequency;alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR5L2	NM_001004739	exon1	c.G462T	p.V154V	GACGGTGTGTTCT	.	231	87	198	0	G|0.999;C|0.001	69	T	55595156	G	T	55595156	2	4	81	1	0	0	0	0	0	0	0	1	11171	1364	48	3		3	OR5L2	11	55595156	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	7369	55595156	79411360	89	10708											
OR9I1	219954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57886305	57886305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR9I1	NM_001005211	exon1	c.T612A	p.N204K	CACAAAATTGCCA	.	93	20	88	0	.	69	T	57886305	A	T	57886305	3	4	81	1	0	0	0	0	1	0	0	0	11253	98	4	4	336	4	OR9I1	11	57886305	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	2291149	57886305	77120211	90	10709											
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61496465	61496465	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DAGLA	NM_006133	exon8	c.C834A	p.L278L	GTACCTCGACCTC	.	167	18	143	0	.	92	A	61496465	C	A	61496465	2	1	81	1	0	0	0	0	0	0	0	1	4226	871	31	1		1	DAGLA	11	61496465	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	3610160	61496465	73510051	91	10710											
POLR2G	5436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62533971	62533971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	POLR2G	NM_002696	exon8	c.G511T	p.V171L	GGGCTTGTAAGCT	.	122	7	133	0	.	90	T	62533971	G	T	62533971	3	4	81	1	0	0	0	0	1	0	0	0	12220	1377	48	3	541	3	POLR2G	11	62533971	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	1037506	62533971	72472545	92	10711											
NDUFS8	4728	broad.mit.edu;bcgsc.ca	37	11	67799630	67799630	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NDUFS8	NM_002496	exon2	c.G12A	p.L4L	CTGCCTGACCACG	.	64	5	68	0	.	91	A	67799630	G	A	67799630	2	1	81	1	0	0	0	0	0	0	0	1	10298	1277	45	3		3	NDUFS8	11	67799630	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	5265659	67799630	67206886	93	10712											
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119206381	119206381	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RNF26	NM_032015	exon1	c.A549G	p.V183V	GGACGTAGTGGCT	.	106	38	111	0	.	227	G	119206381	A	G	119206381	2	3	81	1	0	0	0	0	0	0	0	1	13486	407	15	2		2	RNF26	11	119206381	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	51406751	119206381	15800135	94	10713											
RECQL	5965	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21644631	21644631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RECQL	NM_032941	exon4	c.T36C	p.D12D	TATAGAATCCAGT	.	122	32	103	1	.	228	G	21644631	A	G	21644631	2	3	81	1	0	0	0	0	0	0	0	1	13201	98	4	2		2	RECQL	12	21644631	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		21644631	112207264	95	10714											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26568361	26568361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ITPR2	NM_002223	exon51	c.C7181G	p.S2394C	ATAATAGAGCGGC	.	132	37	117	0	.	542	C	26568361	G	C	26568361	3	2	81	1	0	0	0	0	1	0	0	0	7921	942	33	4	952	4	ITPR2	12	26568361	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	4923730	26568361	107283534	96	10715											
RAPGEF3	10411	ucsc.edu;bcgsc.ca	37	12	48141580	48141580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RAPGEF3	NM_001098531	exon14	c.A1388G	p.Q463R	ATCTGCTGCCTCT	.	37	4	25	0	.	660	C	48141580	T	C	48141580	3	2	81	1	0	0	0	0	1	0	0	0	13045	1580	55	2	1443	2	RAPGEF3	12	48141580	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	21573219	48141580	85710315	97	10716											
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50186244	50186244	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NCKAP5L	NM_001037806	exon12	c.G3777T	p.L1259L	CCTGGGCAGCCCC	.	59	21	61	0	.	68	A	50186244	C	A	50186244	2	1	81	1	0	0	0	0	0	0	0	1	10224	697	25	3		3	NCKAP5L	12	50186244	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	2044664	50186244	83665651	98	10717											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66742812	66742812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GRIP1	NM_021150	exon24	c.C3218A	p.T1073N	GTATTAGTGGGTT	.	283	30	275	0	.	494	T	66742812	G	T	66742812	3	4	81	1	0	0	0	0	1	0	0	0	6787	1029	36	3	16	3	GRIP1	12	66742812	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	16556568	66742812	67109083	99	10718											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	111951212	111951212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATXN2	NM_002973	exon11	c.G1987A	p.V663I	TTGCTACTGGAGG	.	142	6	136	0	.	136	T	111951212	C	T	111951212	3	4	81	1	0	0	0	0	1	0	0	0	1211	565	20	3	2014	3	ATXN2	12	111951212	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	45208400	111951212	21900683	100	10719											
ZMYM5	9205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20426199	20426199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZMYM5	NM_001039650	exon3	c.C122G	p.P41R	ACTAAAGGACAAG	.	100	34	75	0	.	90	C	20426199	G	C	20426199	3	2	81	1	0	0	0	0	1	0	0	0	17700	1000	35	4	2022	4	ZMYM5	13	20426199	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10		20426199	94743679	101	10720											
LCP1	3936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46730648	46730649	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	p.D139C	CGACAATCAGGAT	.	196	23	164	0	.	.	CA	46730649	TC	CA	46730648	3	2	81	1	0	0	0	0	1	0	0	0	8691	1435	50	2	1515	2	LCP1	13	46730648	Missense_Mutation	DNP	TC	TCGA-DD-A3A8-01A-11D-A22F-10	26304449	46730648	68439230	102	10721											
FARP1	10160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99099038	99099038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FARP1	NM_005766	exon26	c.A3023G	p.Y1008C	TCTACTACTTCAG	.	82	30	74	1	.	290	G	99099038	A	G	99099038	3	3	81	1	0	0	0	0	1	0	0	0	5676	391	14	2	3344	2	FARP1	13	99099038	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	52368390	99099038	16070840	103	10722											
RAB20	55647	broad.mit.edu;mdanderson.org	37	13	111213727	111213727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RAB20	NM_017817	exon1	c.G140T	p.R47L	TAGGAGCGCCACT	.	27	7	19	0	.	227	A	111213727	C	A	111213727	3	1	81	1	0	0	0	0	1	0	0	0	12907	768	27	1	572	1	RAB20	13	111213727	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	12114689	111213727	3956151	104	10723											
IPO4	79711	hgsc.bcm.edu;bcgsc.ca	37	14	24654743	24654743	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IPO4	NM_024658	exon13	c.C1200T	p.C400C	GCCCTTGCACACA	.	59	29	42	0	.	226	A	24654743	G	A	24654743	2	1	81	1	0	0	0	0	0	0	0	1	7795	1311	46	3		3	IPO4	14	24654743	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10		24654743	82694797	105	10724											
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73576174	73576174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RBM25	NM_021239	exon14	c.C1666G	p.P556A	GGGCATCCAGATC	.	154	39	138	0	.	91	G	73576174	C	G	73576174	3	3	81	1	0	0	0	0	1	0	0	0	13125	855	30	4	1716	4	RBM25	14	73576174	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	48921431	73576174	33773366	106	10725											
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81964803	81964803	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEL1L	NM_005065	exon9	c.G927A	p.Q309Q	ACAACTCTGGAGG	.	67	17	74	0	.	227	T	81964803	C	T	81964803	2	4	81	1	0	0	0	0	0	0	0	1	14010	912	32	3		3	SEL1L	14	81964803	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	8388629	81964803	25384737	107	10726											
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414676	105414676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	AHNAK2	NM_138420	exon7	c.C7112T	p.P2371L	GCGGAAGGGGGCT	.	104	34	87	0	.	47	A	105414676	G	A	105414676	3	1	81	1	0	0	0	0	1	0	0	0	415	1000	35	3	10279	3	AHNAK2	14	105414676	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	23449873	105414676	1934864	108	10727											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26026303	26026303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATP10A	NM_024490	exon2	c.T517C	p.C173R	CGTTGCAGCGAAG	.	55	11	86	0	.	139	G	26026303	A	G	26026303	3	3	81	1	0	0	0	0	1	0	0	0	1116	188	7	2	4062	2	ATP10A	15	26026303	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		26026303	76505089	109	10728											
PAQR5	54852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69695986	69695986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PAQR5	NM_001104554	exon9	c.T818A	p.L273H	CCATACTTCTGGA	.	74	26	86	0	.	70	A	69695986	T	A	69695986	3	1	81	1	0	0	0	0	1	0	0	0	11438	1609	56	4	844	4	PAQR5	15	69695986	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	43669683	69695986	32835406	110	10729											
MEF2A	4205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100211575	100211575	+	Missense_Mutation	SNP	C	C	A	rs1135561	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MEF2A	NM_001130926	exon4	c.C306A	p.D102E	TGCTGACGATTAC	.	181	66	188	1	.	455	A	100211575	C	A	100211575	3	1	81	1	0	0	0	0	1	0	0	0	9455	535	19	1	316	1	MEF2A	15	100211575	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	30515589	100211575	2319817	111	10730											
TARSL2	123283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102215816	102215816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TARSL2	NM_152334	exon13	c.A1775G	p.N592S	GCCTCATTCCACA	.	87	23	64	0	.	92	C	102215816	T	C	102215816	3	2	81	1	0	0	0	0	1	0	0	0	15558	1493	52	2	661	2	TARSL2	15	102215816	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	2004241	102215816	315576	112	10731											
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3807292	3807292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CREBBP	NM_004380	exon19	c.A3695G	p.N1232S	TACCTATTCTGAT	.	141	52	163	1	.	1807	C	3807292	T	C	3807292	3	2	81	1	0	0	0	0	1	0	0	0	3861	1493	52	2	3685	2	CREBBP	16	3807292	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10		3807292	86547461	113	10732											
TFAP4	7023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4308230	4308230	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TFAP4	NM_003223	exon7	c.C843T	p.G281G	CTGGGTGCCCTCG	.	45	18	54	0	.	91	A	4308230	G	A	4308230	2	1	81	1	0	0	0	0	0	0	0	1	15789	1306	46	3		3	TFAP4	16	4308230	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	500938	4308230	86046523	114	10733											
CDH1	999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68845609	68845609	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDH1	NM_004360	exon7	c.A855G	p.T285T	GGTCACAGCCACA	.	58	9	48	0	.	3377	G	68845609	A	G	68845609	2	3	81	1	0	0	0	0	0	0	0	1	3095	175	7	2		2	CDH1	16	68845609	Silent	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	64537379	68845609	21509144	115	10734											
PIK3R5	23533	ucsc.edu;bcgsc.ca	37	17	8812422	8812422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PIK3R5	NM_001142633	exon3	c.T173C	p.L58P	TCAAGGAGGATAA	.	44	4	50	0	.	1146	G	8812422	A	G	8812422	3	3	81	1	0	0	0	0	1	0	0	0	11922	304	11	2	2537	2	PIK3R5	17	8812422	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		8812422	72382788	116	10735											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10429161	10429161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYH2	NM_017534	exon31	c.A4220T	p.E1407V	TGTTCCTCAGCTG	.	109	9	102	0	.	194	A	10429161	T	A	10429161	3	1	81	1	0	0	0	0	1	0	0	0	10035	1551	54	4	1645	4	MYH2	17	10429161	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	1616739	10429161	70766049	117	10736											
TTC19	54902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15928399	15928399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTC19	NM_017775	exon8	c.T745C	p.F249L	CTTCTGTTCTCCA	.	130	21	86	0	.	91	C	15928399	T	C	15928399	3	2	81	1	0	0	0	0	1	0	0	0	16683	1725	60	2	1138	2	TTC19	17	15928399	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	5499238	15928399	65266811	118	10737											
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	57138433	57138433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM37	NM_015294	exon12	c.G979T	p.V327L	GAAACACAGATAA	.	183	17	141	0	.	660	A	57138433	C	A	57138433	3	1	81	1	0	0	0	0	1	0	0	0	16508	478	17	3	1975	3	TRIM37	17	57138433	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	41210034	57138433	24056777	119	10738											
CA4	762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58233977	58233977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CA4	NM_000717	exon3	c.G169A	p.V57I	AACATCGTCACCA	.	74	20	62	0	.	226	A	58233977	G	A	58233977	3	1	81	1	0	0	0	0	1	0	0	0	2518	1145	40	1	179	1	CA4	17	58233977	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	1095544	58233977	22961233	120	10739											
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66920897	66920897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ABCA8	NM_007168	exon10	c.T1387G	p.F463V	CATGAAATGAAGG	.	92	32	69	0	.	93	C	66920897	A	C	66920897	3	2	81	1	0	0	0	0	1	0	0	0	38	101	4	5	3474	5	ABCA8	17	66920897	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	8686920	66920897	14274313	121	10740											
RECQL5	9400	broad.mit.edu;ucsc.edu	37	17	73624403	73624403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RECQL5	NM_004259	exon18	c.A2700C	p.Q900H	GGGGTCTTGAGCC	.	56	5	38	0	.	538	G	73624403	T	G	73624403	3	3	81	1	0	0	0	0	1	0	0	0	13203	1606	56	5	287	5	RECQL5	17	73624403	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	6703506	73624403	7570807	122	10741											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21464744	21464744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LAMA3	NM_001127717	exon41	c.A5230G	p.T1744A	TTTGCCACTGGCT	.	204	30	169	0	.	100	G	21464744	A	G	21464744	3	3	81	1	0	0	0	0	1	0	0	0	8607	159	6	2	5567	2	LAMA3	18	21464744	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		21464744	56612504	123	10742											
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54358487	54358487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WDR7	NM_052834	exon8	c.C758G	p.P253R	CAGGTCCTAGTGA	.	169	18	168	0	.	93	G	54358487	C	G	54358487	3	3	81	1	0	0	0	0	1	0	0	0	17317	681	24	4	784	4	WDR7	18	54358487	Missense_Mutation	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	32893743	54358487	23718761	124	10743											
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4159733	4159733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CREB3L3	NM_001271997	exon4	c.A530G	p.N177S	GATGCAATCTCAC	.	14	6	25	0	.	92	G	4159733	A	G	4159733	3	3	81	1	0	0	0	0	1	0	0	0	3858	101	4	2	544	2	CREB3L3	19	4159733	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10		4159733	54969250	125	10744											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057572	9057572	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MUC16	NM_024690	exon3	c.C29874A	p.T9958T	TTTTTGGGTGGTG	.	266	108	280	0	.	566	T	9057572	G	T	9057572	2	4	81	1	0	0	0	0	0	0	0	1	9973	1219	43	3		3	MUC16	19	9057572	Silent	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	4897839	9057572	50071411	126	10745											
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12637749	12637749	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF564	NM_144976	exon4	c.A1173G	p.G391G	ATAAGGTCCATCT	.	99	8	82	0	.	91	C	12637749	T	C	12637749	2	2	81	1	0	0	0	0	0	0	0	1	17992	1654	58	2		2	ZNF564	19	12637749	Silent	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	3580177	12637749	46491234	127	10746											
PSMD8	5714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38867031	38867031	+	Missense_Mutation	SNP	G	G	A	rs200403794		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PSMD8	NM_002812	exon3	c.G473A	p.R158H	TCCTACGCAAGGA	.	83	30	56	0	.	68	A	38867031	G	A	38867031	3	1	81	1	0	0	0	0	1	0	0	0	12704	1087	38	1	483	1	PSMD8	19	38867031	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	26229282	38867031	20261952	128	10747											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42866314	42866314	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MEGF8	NM_001271938	exon33	c.C5793T	p.C1931C	GACCTGCAGTGAG	.	40	15	19	0	.	23	T	42866314	C	T	42866314	2	4	81	1	0	0	0	0	0	0	0	1	9463	718	25	3		3	MEGF8	19	42866314	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	3999283	42866314	16262669	129	10748											
ZNF211	10520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58152126	58152126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF211	NM_001265597	exon5	c.G467T	p.G156V	TTTCTGGAGAAAG	.	170	18	153	0	.	92	T	58152126	G	T	58152126	3	4	81	1	0	0	0	0	1	0	0	0	17764	1174	41	3	325	3	ZNF211	19	58152126	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	15285812	58152126	976857	130	10749											
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58489764	58489767	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF606	NM_025027	exon7	c.2281_2284del	p.761_762del	AGCGTTTCTCTCC	.	172	45	177	0	.	92	-	58489767	TCTC	-	58489764	7	5	81	1	0	1	0	1	0	0	0	0	18029	1792	62	0	98	0	ZNF606	19	58489764	Frame_Shift_Del	DEL	TCTC	TCGA-DD-A3A8-01A-11D-A22F-10	337638	58489764	639219	131	10750											
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	1471995	1471995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SIRPB2	NM_001122962	exon1	c.C11T	p.T4M	GACATCGTGGAGC	.	90	8	81	0	.	226	A	1471995	G	A	1471995	3	1	81	1	0	0	0	0	1	0	0	0	14334	1145	40	1	1037	1	SIRPB2	20	1471995	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10		1471995	61553525	132	10751											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	40049297	40049297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CHD6	NM_032221	exon31	c.A5978T	p.H1993L	AGCTCATGCTTCA	.	186	12	186	0	.	238	A	40049297	T	A	40049297	3	1	81	1	0	0	0	0	1	0	0	0	3329	1464	51	4	2197	4	CHD6	20	40049297	Missense_Mutation	SNP	T	TCGA-DD-A3A8-01A-11D-A22F-10	38577302	40049297	22976223	133	10752											
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17443765	17443765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GAB4	NM_001037814	exon10	c.C1583A	p.P528Q	ATGGATGGCTGAG	.	45	17	28	0	.	91	T	17443765	G	T	17443765	3	4	81	1	0	0	0	0	1	0	0	0	6151	1362	47	3	145	3	GAB4	22	17443765	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10		17443765	33860801	134	10753											
LIMK2	3985	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31655931	31655931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LIMK2	NM_005569	exon5	c.A419G	p.E140G	CCACAGAGTCTGT	.	29	10	22	1	.	548	G	31655931	A	G	31655931	3	3	81	1	0	0	0	0	1	0	0	0	8802	304	11	2	494	2	LIMK2	22	31655931	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	14212166	31655931	19648635	135	10754											
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	45809347	45809347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SMC1B	NM_148674	exon1	c.C102A	p.N34K	AGAGCCGTTGGGG	.	50	15	65	0	.	229	T	45809347	G	T	45809347	3	4	81	1	0	0	0	0	1	0	0	0	14782	1136	40	1	3705	1	SMC1B	22	45809347	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	14153416	45809347	5495219	136	10755											
ASMT	438	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1752180	1752180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ASMT	NM_001171038	exon7	c.G784A	p.E262K	TTCCAGGAAGGTG	.	483	106	425	2	.	40	A	1752180	G	A	1752180	3	1	81	1	0	0	0	0	1	0	0	0	1045	1175	41	3	810	3	ASMT	23	1752180	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10		1752180	153518380	137	10756											
CACNA1F	778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49062154	49062154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CACNA1F	NM_005183	exon47	c.C5625A	p.F1875L	ACAGGTGAAGGTG	.	78	43	64	1	.	176	T	49062154	G	T	49062154	3	4	81	1	0	0	0	0	1	0	0	0	2543	1281	45	3	316	3	CACNA1F	23	49062154	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	47309974	49062154	106208406	138	10757											
HDAC8	55869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71788678	71788678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HDAC8	NM_018486	exon3	c.C221G	p.A74G	AGATAAGCATCAG	.	28	17	31	0	.	226	C	71788678	G	C	71788678	3	2	81	1	0	0	0	0	1	0	0	0	7013	971	34	4	1034	4	HDAC8	23	71788678	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	22726524	71788678	83481882	139	10758											
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107910381	107910381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	COL4A5	NM_000495	exon40	c.A3572G	p.N1191S	TTGGAAACCCAGG	.	149	6	111	1	.	133	G	107910381	A	G	107910381	3	3	81	1	0	0	0	0	1	0	0	0	3694	43	2	2	3730	2	COL4A5	23	107910381	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	36121703	107910381	47360179	140	10759											
GUCY2F	2986	broad.mit.edu;bcgsc.ca	37	X	108684675	108684675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GUCY2F	NM_001522	exon7	c.T1606C	p.S536P	CCTCTGAGGTAAT	.	94	4	59	0	.	540	G	108684675	A	G	108684675	3	3	81	1	0	0	0	0	1	0	0	0	6898	304	11	2	1772	2	GUCY2F	23	108684675	Missense_Mutation	SNP	A	TCGA-DD-A3A8-01A-11D-A22F-10	774294	108684675	46585885	141	10760											
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149905792	149905792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MTMR1	NM_003828	exon11	c.G1321T	p.G441C	AGCGACGGTTGGG	.	71	57	64	0	.	131	T	149905792	G	T	149905792	3	4	81	1	0	0	0	0	1	0	0	0	9938	1116	39	1	1363	1	MTMR1	23	149905792	Missense_Mutation	SNP	G	TCGA-DD-A3A8-01A-11D-A22F-10	41221117	149905792	5364768	142	10761											
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152085856	152085856	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF185	NM_001178109	exon5	c.C291T	p.S97S	AGACAGCTCTTCC	.	100	27	92	0	.	133	T	152085856	C	T	152085856	2	4	81	1	0	0	0	0	0	0	0	1	17749	796	28	3		3	ZNF185	23	152085856	Silent	SNP	C	TCGA-DD-A3A8-01A-11D-A22F-10	2180064	152085856	3184704	143	10762											
PRAMEF2	65122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12919960	12919960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PRAMEF2	NM_023014	exon3	c.C700T	p.L234F	AAGACTCTTTGCA	.	145	32	171	0	.	68	T	12919960	C	T	12919960	3	4	82	1	0	0	0	0	1	0	0	0	12435	913	32	3	706	3	PRAMEF2	1	12919960	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		12919960	236330661	1	10763											
CDA	978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20940334	20940334	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CDA	NM_001785	exon3	c.267-1G>A	.	TCCCCAGTGACAT	.	104	20	137	0	.	91	A	20940334	G	A	20940334	5	1	82	1	0	0	0	0	0	0	1	0	3052	1043	36	3	276	3	CDA	1	20940334	Splice_Site	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	8020374	20940334	228310287	2	10764											
HTR1D	3352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23519871	23519871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HTR1D	NM_000864	exon1	c.T842A	p.L281H	TCAGCAAGCTTGA	.	61	14	96	0	.	90	T	23519871	A	T	23519871	3	4	82	1	0	0	0	0	1	0	0	0	7438	72	3	4	295	4	HTR1D	1	23519871	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2579537	23519871	225730750	3	10765											
C1orf63	57035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	25570119	25570119	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf63	NM_020317	exon4	c.G678T	p.S226S	CTTTTCCGACAGC	.	108	5	175	0	.	91	A	25570119	C	A	25570119	2	1	82	1	0	0	0	0	0	0	0	1	2053	639	23	1		1	C1orf63	1	25570119	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2050248	25570119	223680502	4	10766											
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34330001	34330001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HMGB4	NM_145205	exon2	c.G209A	p.R70Q	AAGCCCGATACCA	.	89	18	119	0	.	90	A	34330001	G	A	34330001	3	1	82	1	0	0	0	0	1	0	0	0	7228	1058	37	1	211	1	HMGB4	1	34330001	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	8759882	34330001	214920620	5	10767											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34667800	34667800	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf94	NM_001134734	exon4	c.C1386T	p.L462L	CTGGCTCAACCTG	.	215	47	293	0	.	90	T	34667800	C	T	34667800	2	4	82	1	0	0	0	0	0	0	0	1	2071	813	29	3		3	C1orf94	1	34667800	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	337799	34667800	214582821	6	10768											
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38033329	38033329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GNL2	NM_013285	exon15	c.G1988A	p.R663K	TCTTCCCTTTGTG	.	115	24	142	0	.	91	T	38033329	C	T	38033329	3	4	82	1	0	0	0	0	1	0	0	0	6536	681	24	3	215	3	GNL2	1	38033329	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3365529	38033329	211217292	7	10769											
LEPR	3953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66102182	66102182	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LEPR	NM_002303	exon20	c.A2982G	p.K994K	CTCTAAACCAAGT	.	36	7	56	0	.	91	G	66102182	A	G	66102182	2	3	82	1	0	0	0	0	0	0	0	1	8728	40	2	2		2	LEPR	1	66102182	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	28068853	66102182	183148439	8	10770											
MIER1	57708	hgsc.bcm.edu;broad.mit.edu	37	1	67436586	67436586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MIER1	NM_001077700	exon9	c.G868A	p.D290N	ACAGGTGATGAGA	.	77	5	136	0	.	91	A	67436586	G	A	67436586	3	1	82	1	0	0	0	0	1	0	0	0	9580	1290	45	3	979	3	MIER1	1	67436586	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1334404	67436586	181814035	9	10771											
ZNHIT6	54680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86123530	86123530	+	Missense_Mutation	SNP	C	C	A	rs139368369		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNHIT6	NM_017953	exon9	c.G1372T	p.V458L	ACTTACCTTGGTG	.	54	13	55	0	C|1.000;A|0.000	153	A	86123530	C	A	86123530	3	1	82	1	0	0	0	0	1	0	0	0	18206	695	24	3	48	3	ZNHIT6	1	86123530	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	18686944	86123530	163127091	10	10772											
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	92789745	92789745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RPAP2	NM_024813	exon8	c.G1268A	p.W423X	CTGCCTGGAGGGA	.	80	21	110	0	.	91	A	92789745	G	A	92789745	4	1	82	1	0	0	0	0	0	1	0	0	13542	1357	47	3	1298	3	RPAP2	1	92789745	Nonsense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	6666215	92789745	156460876	11	10773											
ABCA4	24	broad.mit.edu;mdanderson.org	37	1	94495183	94495183	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ABCA4	NM_000350	exon30	c.T4357A	p.Y1453N	AGGGGTACTCCCT	.	30	5	56	0	.	162	T	94495183	A	T	94495183	3	4	82	1	0	0	0	0	1	0	0	0	34	391	14	4	2548	4	ABCA4	1	94495183	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1705438	94495183	154755438	12	10774											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118558673	118558673	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPAG17	NM_206996	exon29	c.A4202C	p.N1401T	ATCCGATTTCCTT	.	218	49	320	0	.	158	G	118558673	T	G	118558673	3	3	82	1	0	0	0	0	1	0	0	0	14979	1493	52	5	2549	5	SPAG17	1	118558673	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	24063490	118558673	130691948	13	10775											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144931551	144931551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PDE4DIP	NM_001002811	exon1	c.A158G	p.K53R	GCACACTTGCTGC	.	267	13	240	0	.	663	C	144931551	T	C	144931551	3	2	82	1	0	0	0	0	1	0	0	0	11643	1609	56	2	7541	2	PDE4DIP	1	144931551	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	26372878	144931551	104319070	14	10776											
PRKAB2	5565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	146634090	146634090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PRKAB2	NM_005399	exon6	c.A601G	p.R201G	TGAATCTTTCCTC	.	143	14	104	0	.	659	C	146634090	T	C	146634090	3	2	82	1	0	0	0	0	1	0	0	0	12496	1617	56	2	229	2	PRKAB2	1	146634090	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1702539	146634090	102616531	15	10777											
VPS45	11311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150054035	150054035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VPS45	NM_007259	exon9	c.A892G	p.K298E	AAGAAGAAACCAA	.	205	14	129	0	.	91	G	150054035	A	G	150054035	3	3	82	1	0	0	0	0	1	0	0	0	17208	247	9	2	926	2	VPS45	1	150054035	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3419945	150054035	99196586	16	10778											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150915464	150915464	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SETDB1	NM_012432	exon7	c.T810C	p.D270D	CAAAGATGGGAAT	.	384	37	210	0	.	228	C	150915464	T	C	150915464	2	2	82	1	0	0	0	0	0	0	0	1	14138	1461	51	2		2	SETDB1	1	150915464	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	861429	150915464	98335157	17	10779											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286777	152286777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLG	NM_002016	exon3	c.C585T	p.D195D	CCTATTGTCTCCT	.	282	31	143	0	.	106	A	152286777	G	A	152286777	2	1	82	1	0	0	0	0	0	0	0	1	5922	1368	48	3		3	FLG	1	152286777	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1371313	152286777	96963844	18	10780											
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152327323	152327323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLG2	NM_001014342	exon3	c.G2939C	p.G980A	CCTGAGCCTGACT	.	520	40	300	0	.	151	G	152327323	C	G	152327323	3	3	82	1	0	0	0	0	1	0	0	0	5923	739	26	4	4240	4	FLG2	1	152327323	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	40546	152327323	96923298	19	10781											
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu	37	1	152785131	152785131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LCE1B	NM_178349	exon1	c.C209T	p.S70F	GCAGTTCTGGGGG	.	98	4	72	0	.	68	T	152785131	C	T	152785131	3	4	82	1	0	0	0	0	1	0	0	0	8660	913	32	3	211	3	LCE1B	1	152785131	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	457808	152785131	96465490	20	10782											
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153653162	153653162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NPR1	NM_000906	exon2	c.C907T	p.R303C	AGTGCCCGCCAGG	.	91	19	44	0	.	393	T	153653162	C	T	153653162	3	4	82	1	0	0	0	0	1	0	0	0	10594	652	23	1	913	1	NPR1	1	153653162	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	868031	153653162	95597459	21	10783											
GATAD2B	57459	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153785891	153785891	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GATAD2B	NM_020699	exon8	c.T1254C	p.F418F	ACATACAAAGGGT	.	284	19	181	1	.	90	G	153785891	A	G	153785891	2	3	82	1	0	0	0	0	0	0	0	1	6261	127	5	2		2	GATAD2B	1	153785891	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	132729	153785891	95464730	22	10784											
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154543704	154543704	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CHRNB2	NM_000748	exon5	c.C405T	p.A135A	CAATGCCGTGGTC	.	240	26	152	0	.	90	T	154543704	C	T	154543704	2	4	82	1	0	0	0	0	0	0	0	1	3391	639	23	1		1	CHRNB2	1	154543704	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	757813	154543704	94706917	23	10785											
KRTCAP2	200185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155145067	155145067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KRTCAP2	NM_173852	exon3	c.G275T	p.G92V	TGGAATCCTTTGC	.	282	16	157	0	.	90	A	155145067	C	A	155145067	3	1	82	1	0	0	0	0	1	0	0	0	8578	855	30	3	225	3	KRTCAP2	1	155145067	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	601363	155145067	94105554	24	10786											
NES	10763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156639411	156639411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NES	NM_006617	exon4	c.G4569A	p.M1523I	ATCCTCCATCCCA	.	297	60	133	0	.	520	T	156639411	C	T	156639411	3	4	82	1	0	0	0	0	1	0	0	0	10337	594	21	3	300	3	NES	1	156639411	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1494344	156639411	92611210	25	10787											
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156641300	156641300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NES	NM_006617	exon4	c.T2680A	p.S894T	CCAGAGATCTCAA	.	204	17	129	0	.	520	T	156641300	A	T	156641300	3	4	82	1	0	0	0	0	1	0	0	0	10337	333	12	4	2189	4	NES	1	156641300	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1889	156641300	92609321	26	10788											
FCRL5	83416	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	157494214	157494214	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FCRL5	NM_031281	exon10	c.C2094T	p.V698V	CAGGGTGACATCT	.	393	38	225	1	.	156	A	157494214	G	A	157494214	2	1	82	1	0	0	0	0	0	0	0	1	5798	1277	45	3		3	FCRL5	1	157494214	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	852914	157494214	91756407	27	10789											
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158368322	158368322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR10T2	NM_001004475	exon1	c.A935C	p.K312T	CTCATCTTGGTTG	.	94	12	57	0	.	70	G	158368322	T	G	158368322	3	3	82	1	0	0	0	0	1	0	0	0	10919	1609	56	5	11	5	OR10T2	1	158368322	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	874108	158368322	90882299	28	10790											
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	159901621	159901621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IGSF9	NM_001135050	exon11	c.C1343T	p.P448L	ACAACAGGAGGAG	.	113	9	50	0	.	156	A	159901621	G	A	159901621	3	1	82	1	0	0	0	0	1	0	0	0	7605	1000	35	3	2240	3	IGSF9	1	159901621	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1533299	159901621	89349000	29	10791											
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160141549	160141549	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ATP1A4	NM_144699	exon12	c.1854+2T>C	.	TTAAGGTAAATAC	.	96	12	42	0	.	94	C	160141549	T	C	160141549	5	2	82	1	0	0	0	0	0	0	1	0	1131	1652	57	2	1902	2	ATP1A4	1	160141549	Splice_Site	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	239928	160141549	89109072	30	10792											
GPA33	10223	broad.mit.edu;bcgsc.ca	37	1	167038166	167038166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPA33	NM_005814	exon3	c.G408T	p.L136F	GAGGACCAACAGG	.	343	30	175	1	.	90	A	167038166	C	A	167038166	3	1	82	1	0	0	0	0	1	0	0	0	6586	593	21	3	571	3	GPA33	1	167038166	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	6896617	167038166	82212455	31	10793											
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	172357765	172357765	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNM3	NM_015569	exon20	c.C2338G	p.L780V	GCTCCCCTCGCAA	.	126	11	67	0	.	90	G	172357765	C	G	172357765	3	3	82	1	0	0	0	0	1	0	0	0	4673	681	24	4	2416	4	DNM3	1	172357765	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	5319599	172357765	76892856	32	10794											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	179659883	179659883	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TDRD5	NM_001199085	exon18	c.T2913C	p.A971A	CCGTGCTATTACA	.	148	12	70	0	.	94	C	179659883	T	C	179659883	2	2	82	1	0	0	0	0	0	0	0	1	15730	1509	53	2		2	TDRD5	1	179659883	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	7302118	179659883	69590738	33	10795											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181706682	181706682	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CACNA1E	NM_001205293	exon23	c.C3444T	p.Y1148Y	CCACTACATCGTG	.	259	28	173	0	.	95	T	181706682	C	T	181706682	2	4	82	1	0	0	0	0	0	0	0	1	2542	489	17	3		3	CACNA1E	1	181706682	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2046799	181706682	67543939	34	10796											
RGS8	85397	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	182617399	182617399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RGS8	NM_033345	exon5	c.T287C	p.F96S	TCACTGAACTCCG	.	223	20	121	0	.	227	G	182617399	A	G	182617399	3	3	82	1	0	0	0	0	1	0	0	0	13312	246	9	2	317	2	RGS8	1	182617399	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	910717	182617399	66633222	35	10797											
HMCN1	83872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186077693	186077693	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HMCN1	NM_031935	exon71	c.T10953A	p.P3651P	CCCACCTGTAATT	.	118	12	75	1	.	113	A	186077693	T	A	186077693	2	1	82	1	0	0	0	0	0	0	0	1	7220	1567	55	4		4	HMCN1	1	186077693	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3460294	186077693	63172928	36	10798											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	186099815	186099815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HMCN1	NM_031935	exon85	c.A13216T	p.I4406F	CTGGCCATCTATG	.	93	11	51	0	.	113	T	186099815	A	T	186099815	3	4	82	1	0	0	0	0	1	0	0	0	7220	217	8	4	13554	4	HMCN1	1	186099815	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	22122	186099815	63150806	37	10799											
PDC	5132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	186413279	186413279	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PDC	NM_002597	exon4	c.C573A	p.I191I	TTTATAGATGAGC	.	164	13	92	0	.	91	T	186413279	G	T	186413279	2	4	82	1	0	0	0	0	0	0	0	1	11614	932	33	3		3	PDC	1	186413279	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	313464	186413279	62837342	38	10800											
PLA2G4A	5321	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	186880457	186880457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLA2G4A	NM_024420	exon7	c.T494A	p.I165K	AACACATAAGGGA	.	269	17	157	1	.	721	A	186880457	T	A	186880457	3	1	82	1	0	0	0	0	1	0	0	0	12001	1406	49	4	516	4	PLA2G4A	1	186880457	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	467178	186880457	62370164	39	10801											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	197403858	197403858	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CRB1	NM_201253	exon9	c.T2865A	p.N955K	TTTTAATGGACAA	.	181	15	122	0	.	161	A	197403858	T	A	197403858	3	1	82	1	0	0	0	0	1	0	0	0	3848	1461	51	4	2899	4	CRB1	1	197403858	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	10523401	197403858	51846763	40	10802											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201186436	201186436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IGFN1	NM_001164586	exon17	c.C9617T	p.A3206V	CTTCCGCGCCAGC	.	97	12	88	0	.	71	T	201186436	C	T	201186436	3	4	82	1	0	0	0	0	1	0	0	0	7590	768	27	1	9679	1	IGFN1	1	201186436	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3782578	201186436	48064185	41	10803											
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201757647	201757647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NAV1	NM_020443	exon10	c.C3047T	p.P1016L	GCATCCCCACCCA	.	250	14	146	0	.	228	T	201757647	C	T	201757647	3	4	82	1	0	0	0	0	1	0	0	0	10183	623	22	3	3142	3	NAV1	1	201757647	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	571211	201757647	47492974	42	10804											
C1orf116	79098	hgsc.bcm.edu;broad.mit.edu	37	1	207198319	207198319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf116	NM_023938	exon3	c.G196A	p.D66N	CGCTGTCAGCCTC	.	177	8	87	0	.	93	T	207198319	C	T	207198319	3	4	82	1	0	0	0	0	1	0	0	0	1989	826	29	3	1617	3	C1orf116	1	207198319	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	5440672	207198319	42052302	43	10805											
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	211093070	211093070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNH1	NM_172362	exon7	c.G1374T	p.M458I	GCTGGTCATTGTG	.	460	23	247	0	.	94	A	211093070	C	A	211093070	3	1	82	1	0	0	0	0	1	0	0	0	8031	826	29	3	1615	3	KCNH1	1	211093070	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3894751	211093070	38157551	44	10806											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216172333	216172333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	USH2A	NM_206933	exon34	c.C6553A	p.H2185N	AATCATGTGTATG	.	227	22	115	0	.	115	T	216172333	G	T	216172333	3	4	82	1	0	0	0	0	1	0	0	0	17033	1377	48	3	9211	3	USH2A	1	216172333	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5079263	216172333	33078288	45	10807											
ESRRG	2104	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	216850694	216850694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ESRRG	NM_001243518	exon3	c.G211A	p.G71R	AGCTCCCACTGGC	.	658	57	387	0	.	187	T	216850694	C	T	216850694	3	4	82	1	0	0	0	0	1	0	0	0	5262	594	21	3	1204	3	ESRRG	1	216850694	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	678361	216850694	32399927	46	10808											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220387288	220387288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAB3GAP2	NM_012414	exon3	c.A214G	p.T72A	AGGAAGTTTTTTG	.	282	32	147	0	.	90	C	220387288	T	C	220387288	3	2	82	1	0	0	0	0	1	0	0	0	12936	1725	60	2	4099	2	RAB3GAP2	1	220387288	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3536594	220387288	28863333	47	10809											
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	222822189	222822189	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MIA3	NM_198551	exon8	c.C3628T	p.Q1210X	GTATATCAAGGTA	.	68	11	52	0	.	98	T	222822189	C	T	222822189	4	4	82	1	0	0	0	0	0	1	0	0	9565	827	29	3	3658	3	MIA3	1	222822189	Nonsense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2434901	222822189	26428432	48	10810											
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223567373	223567373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf65	NM_152610	exon1	c.T556A	p.S186T	TCCCCTTCCTCAG	.	475	50	244	0	.	91	A	223567373	T	A	223567373	3	1	82	1	0	0	0	0	1	0	0	0	2055	1783	62	4	558	4	C1orf65	1	223567373	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	745184	223567373	25683248	49	10811											
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	231411879	231411879	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GNPAT	NM_014236	exon15	c.1938-2A>G	.	TCTCCTAGAAATA	.	345	33	201	0	.	156	G	231411879	A	G	231411879	5	3	82	1	0	0	0	0	0	0	1	0	6541	434	15	2	1994	2	GNPAT	1	231411879	Splice_Site	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	7844506	231411879	17838742	50	10812											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237713919	237713919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RYR2	NM_001035	exon27	c.G3142A	p.D1048N	AACAAGGACAGCC	.	358	50	180	0	.	158	A	237713919	G	A	237713919	3	1	82	1	0	0	0	0	1	0	0	0	13769	1174	41	3	3248	3	RYR2	1	237713919	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	6302040	237713919	11536702	51	10813											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237982484	237982484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RYR2	NM_001035	exon101	c.T14582C	p.I4861T	TGGCCATAATACA	.	206	12	122	0	.	158	C	237982484	T	C	237982484	3	2	82	1	0	0	0	0	1	0	0	0	13769	1406	49	2	14984	2	RYR2	1	237982484	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	268565	237982484	11268137	52	10814											
RGS7	6000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	240966242	240966242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RGS7	NM_002924	exon16	c.T1321A	p.S441T	CACTGGATCTTAT	.	136	10	76	0	.	232	T	240966242	A	T	240966242	3	4	82	1	0	0	0	0	1	0	0	0	13310	333	12	4	154	4	RGS7	1	240966242	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2983758	240966242	8284379	53	10815											
OR2L2	26246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248202311	248202311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2L2	NM_001004686	exon1	c.T742C	p.S248P	GTAGTGTCCTTCT	.	471	44	230	0	.	70	C	248202311	T	C	248202311	3	2	82	1	0	0	0	0	1	0	0	0	11007	1667	58	2	744	2	OR2L2	1	248202311	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	7236069	248202311	1048310	54	10816											
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569623	248569623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2T1	NM_030904	exon1	c.T328A	p.Y110N	CCCATGTACTTCC	.	337	34	180	0	.	69	A	248569623	T	A	248569623	3	1	82	1	0	0	0	0	1	0	0	0	11016	1638	57	4	330	4	OR2T1	1	248569623	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	367312	248569623	680998	55	10817											
OR2G6	391211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248685435	248685435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2G6	NM_001013355	exon1	c.C488A	p.T163N	CCCTCACTGTGCA	.	448	36	234	0	.	71	A	248685435	C	A	248685435	3	1	82	1	0	0	0	0	1	0	0	0	11000	565	20	3	490	3	OR2G6	1	248685435	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	115812	248685435	565186	56	10818											
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	248737675	248737675	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2T34	NM_001001821	exon1	c.T384G	p.Y128X	AGCAGCATATCGG	.	1219	94	651	0	.	69	C	248737675	A	C	248737675	4	2	82	1	0	0	0	0	0	1	0	0	11025	224	8	5	576	5	OR2T34	1	248737675	Nonsense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	52240	248737675	512946	57	10819											
OR2T10	127069	ucsc.edu;bcgsc.ca	37	1	248756804	248756804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2T10	NM_001004693	exon1	c.A266G	p.D89G	GTCTTGTCTTTGG	.	289	30	148	2	.	69	C	248756804	T	C	248756804	3	2	82	1	0	0	0	0	1	0	0	0	11017	1667	58	2	675	2	OR2T10	1	248756804	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	19129	248756804	493817	58	10820											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15307372	15307372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NBAS	NM_015909	exon52	c.A6916T	p.T2306S	AGGGAGTGGAGAC	.	213	23	180	0	.	94	A	15307372	T	A	15307372	3	1	82	1	0	0	0	0	1	0	0	0	10186	1696	59	4	203	4	NBAS	2	15307372	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		15307372	227892001	59	10821											
KCNS3	3790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	18112349	18112349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNS3	NM_002252	exon3	c.A74G	p.K25R	GCTTTAAGCAGTC	.	365	128	273	0	.	94	G	18112349	A	G	18112349	3	3	82	1	0	0	0	0	1	0	0	0	8090	72	3	2	76	2	KCNS3	2	18112349	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2804977	18112349	225087024	60	10822											
GALNT14	79623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31178813	31178813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GALNT14	NM_001253826	exon6	c.C512T	p.P171L	ACCTTGGGCAACT	.	215	59	160	0	.	93	A	31178813	G	A	31178813	3	1	82	1	0	0	0	0	1	0	0	0	6212	1232	43	3	1205	3	GALNT14	2	31178813	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	13066464	31178813	212020560	61	10823											
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48915238	48915238	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LHCGR	NM_000233	exon11	c.G1698A	p.K566K	AGCAATCTTTGTA	.	169	19	151	0	.	589	T	48915238	C	T	48915238	2	4	82	1	0	0	0	0	0	0	0	1	8762	912	32	3		3	LHCGR	2	48915238	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	17736425	48915238	194284135	62	10824											
EFEMP1	2202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56108782	56108782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EFEMP1	NM_001039349	exon5	c.C605T	p.P202L	CCAGGAGGGCACT	.	220	47	181	0	.	520	A	56108782	G	A	56108782	3	1	82	1	0	0	0	0	1	0	0	0	4941	1000	35	3	904	3	EFEMP1	2	56108782	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	7193544	56108782	187090591	63	10825											
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74707914	74707914	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC142	NM_032779	exon5	c.G1464A	p.K488K	AGTCAGCTTCTGG	.	251	24	205	0	.	68	T	74707914	C	T	74707914	2	4	82	1	0	0	0	0	0	0	0	1	2776	796	28	3		3	CCDC142	2	74707914	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	18599132	74707914	168491459	64	10826											
TACR1	6869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75278382	75278382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TACR1	NM_001058	exon4	c.G928A	p.D310N	ACCTGTCATTGAG	.	383	106	361	1	.	523	T	75278382	C	T	75278382	3	4	82	1	0	0	0	0	1	0	0	0	15502	826	29	3	307	3	TACR1	2	75278382	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	570468	75278382	167920991	65	10827											
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100194857	100194857	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AFF3	NM_001025108	exon17	c.G2925A	p.T975T	CGGCTTCGTCTGC	.	204	66	135	0	.	230	T	100194857	C	T	100194857	2	4	82	1	0	0	0	0	0	0	0	1	358	871	31	1		1	AFF3	2	100194857	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	24916475	100194857	143004516	66	10828											
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102968228	102968228	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IL1RL1	NM_016232	exon11	c.A1518G	p.V506V	GAAAGTACAGGGG	.	213	37	177	0	.	517	G	102968228	A	G	102968228	2	3	82	1	0	0	0	0	0	0	0	1	7663	378	14	2		2	IL1RL1	2	102968228	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2773371	102968228	140231145	67	10829											
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103090418	103090418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC9A4	NM_001011552	exon1	c.T200C	p.V67A	ACTATGTGCAAAT	.	164	48	141	0	.	92	C	103090418	T	C	103090418	3	2	82	1	0	0	0	0	1	0	0	0	14716	1696	59	2	202	2	SLC9A4	2	103090418	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	122190	103090418	140108955	68	10830											
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103124608	103124608	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC9A4	NM_001011552	exon5	c.C1269A	p.I423I	GTGCATCATTTTC	.	414	60	358	0	.	92	A	103124608	C	A	103124608	2	1	82	1	0	0	0	0	0	0	0	1	14716	816	29	3		3	SLC9A4	2	103124608	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	34190	103124608	140074765	69	10831											
SLC9A2	6549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103300730	103300730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC9A2	NM_003048	exon5	c.T1360C	p.F454L	GCTGTGTTTCCTC	.	427	102	347	0	.	157	C	103300730	T	C	103300730	3	2	82	1	0	0	0	0	1	0	0	0	14712	1725	60	2	1378	2	SLC9A2	2	103300730	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	176122	103300730	139898643	70	10832											
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108489237	108489237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RGPD4	NM_182588	exon20	c.T4777A	p.S1593T	AGTGGATCTGAAA	.	173	26	152	0	.	2	A	108489237	T	A	108489237	3	1	82	1	0	0	0	0	1	0	0	0	13288	1435	50	4	4855	4	RGPD4	2	108489237	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5188507	108489237	134710136	71	10833											
ZC3H6	376940	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113082723	113082723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZC3H6	NM_198581	exon11	c.G2035A	p.D679N	CAAGAAGATGAAG	.	414	126	350	2	.	93	A	113082723	G	A	113082723	3	1	82	1	0	0	0	0	1	0	0	0	17568	942	33	3	2077	3	ZC3H6	2	113082723	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4593486	113082723	130116650	72	10834											
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163361023	163361023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNH7	NM_033272	exon6	c.C1058A	p.S353Y	TCTGAAGAAGGAG	.	228	47	178	0	.	95	T	163361023	G	T	163361023	3	4	82	1	0	0	0	0	1	0	0	0	8037	942	33	3	2642	3	KCNH7	2	163361023	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	50278300	163361023	79838350	73	10835											
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165548775	165548775	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COBLL1	NM_014900	exon13	c.C3370T	p.L1124L	CAGTCAGCAAACT	.	169	56	150	0	.	93	A	165548775	G	A	165548775	2	1	82	1	0	0	0	0	0	0	0	1	3654	962	34	3		3	COBLL1	2	165548775	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2187752	165548775	77650598	74	10836											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179494968	179494968	+	Missense_Mutation	SNP	G	G	A	rs192766485		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TTN	NM_001267550	exon239	c.C44281T	p.P14761S	ACTTACGCTTAAC	.	60	11	55	0	G|0.999;A|0.001	636	A	179494968	G	A	179494968	3	1	82	1	0	0	0	0	1	0	0	0	16732	1101	38	1	63908	1	TTN	2	179494968	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	13946193	179494968	63704405	75	10837											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179569674	179569674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TTN	NM_001267550	exon104	c.G29624T	p.R9875M	TCTGACCTCTCTA	.	258	34	183	0	.	636	A	179569674	C	A	179569674	3	1	82	1	0	0	0	0	1	0	0	0	16732	681	24	3	74941	3	TTN	2	179569674	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	74706	179569674	63629699	76	10838											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179616369	179616369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TTN	NM_133379	exon46	c.A10758T	p.E3586D	AGACCCTTCACTA	.	123	33	102	1	.	636	A	179616369	T	A	179616369	3	1	82	1	0	0	0	0	1	0	0	0	16732	1606	56	4	99539	4	TTN	2	179616369	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	46695	179616369	63583004	77	10839											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179648982	179648982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TTN	NM_001267550	exon16	c.G2590A	p.V864M	GCTTCACAGTAGG	.	242	68	202	2	.	636	T	179648982	C	T	179648982	3	4	82	1	0	0	0	0	1	0	0	0	16732	478	17	3	108786	3	TTN	2	179648982	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	32613	179648982	63550391	78	10840											
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189901361	189901361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL5A2	NM_000393	exon52	c.A4094T	p.D1365V	TTCATATCAAGAC	.	100	20	73	0	.	92	A	189901361	T	A	189901361	3	1	82	1	0	0	0	0	1	0	0	0	3697	1435	50	4	417	4	COL5A2	2	189901361	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	10252379	189901361	53298012	79	10841											
STAT4	6775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191898231	191898231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	STAT4	NM_001243835	exon20	c.G1837A	p.D613N	AATGGTCCACCCA	.	128	36	92	0	.	914	T	191898231	C	T	191898231	3	4	82	1	0	0	0	0	1	0	0	0	15266	855	30	3	429	3	STAT4	2	191898231	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1996870	191898231	51301142	80	10842											
MYO1B	4430	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	192228452	192228452	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MYO1B	NM_012223	exon10	c.766-2A>T	.	CTCCCCAGAATGC	.	81	24	79	1	.	238	T	192228452	A	T	192228452	5	4	82	1	0	0	0	0	0	0	1	0	10069	202	7	4	798	4	MYO1B	2	192228452	Splice_Site	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	330221	192228452	50970921	81	10843											
CCDC150	284992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197521532	197521532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001080539	exon3	c.A352T	p.I118F	ATGAACATCTTTC	.	98	26	62	0	.	.	T	197521532	A	T	197521532	3	4	82	1	0	0	0	0	1	0	0	0	2785	217	8	4	362	4	CCDC150	2	197521532	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	5293080	197521532	45677841	82	10844											
BMPR2	659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203332240	203332240	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BMPR2	NM_001204	exon3	c.248-2A>G	.	ATTTATAGGATGT	.	115	47	85	0	.	1003	G	203332240	A	G	203332240	5	3	82	1	0	0	0	0	0	0	1	0	1471	434	15	2	256	2	BMPR2	2	203332240	Splice_Site	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	5810708	203332240	39867133	83	10845											
IKZF2	22807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	213872617	213872617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IKZF2	NM_016260	exon8	c.G1048C	p.V350L	TTATAACTGGGGC	.	193	41	155	0	.	226	G	213872617	C	G	213872617	3	3	82	1	0	0	0	0	1	0	0	0	7615	565	20	4	536	4	IKZF2	2	213872617	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	10540377	213872617	29326756	84	10846											
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218947924	218947924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RUFY4	NM_198483	exon11	c.G1447A	p.G483R	GAGCTTGGAGGGC	.	264	69	202	0	.	46	A	218947924	G	A	218947924	3	1	82	1	0	0	0	0	1	0	0	0	13741	1349	47	3	1481	3	RUFY4	2	218947924	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5075307	218947924	24251449	85	10847											
TUBA4A	7277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220116022	220116022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TUBA4A	NM_006000	exon4	c.G399C	p.Q133H	GAAGCCCTGAAGT	.	111	10	84	0	.	93	G	220116022	C	G	220116022	3	3	82	1	0	0	0	0	1	0	0	0	16746	680	24	4	951	4	TUBA4A	2	220116022	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1168098	220116022	23083351	86	10848											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233710580	233710580	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GIGYF2	NM_001103147	exon28	c.G3507A	p.T1169T	TAATACGGCAAAT	.	171	26	94	0	.	28	A	233710580	G	A	233710580	2	1	82	1	0	0	0	0	0	0	0	1	6378	1103	39	1		1	GIGYF2	2	233710580	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	13594558	233710580	9488793	87	10849											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238274558	238274558	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL6A3	NM_004369	exon12	c.G5621C	p.R1874T	CTGACCCTGTGCA	.	61	17	46	0	.	526	G	238274558	C	G	238274558	3	3	82	1	0	0	0	0	1	0	0	0	3701	681	24	4	4044	4	COL6A3	2	238274558	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4563978	238274558	4924815	88	10850											
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	238990418	238990418	+	Missense_Mutation	SNP	C	C	A	rs140009501	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SCLY	NM_016510	exon5	c.C577A	p.R193S	GCAGTCCGCCCGA	.	139	28	101	0	C|1.000;T|0.000	92	A	238990418	C	A	238990418	3	1	82	1	0	0	0	0	1	0	0	0	13907	652	23	1	571	1	SCLY	2	238990418	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	715860	238990418	4208955	89	10851											
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	7620822	7620822	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRM7	NM_000844	exon8	c.C2229T	p.A743A	GCAAGCCAGAGGG	.	192	44	225	0	.	526	T	7620822	C	T	7620822	2	4	82	1	0	0	0	0	0	0	0	1	6802	581	21	3		3	GRM7	3	7620822	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		7620822	190401608	90	10852											
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776289	9776289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BRPF1	NM_001003694	exon2	c.G465A	p.E155E	CAAGGAGAAGCGC	.	215	37	245	0	.	92	A	9776289	G	A	9776289	2	1	82	1	0	0	0	0	0	0	0	1	1520	933	33	3		3	BRPF1	3	9776289	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2155467	9776289	188246141	91	10853											
LRRC3B	116135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	26751290	26751290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LRRC3B	NM_052953	exon2	c.T127G	p.S43A	TCTTCCTCTGGGG	.	150	36	177	0	.	94	G	26751290	T	G	26751290	3	3	82	1	0	0	0	0	1	0	0	0	8996	1551	54	5	129	5	LRRC3B	3	26751290	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	16975001	26751290	171271140	92	10854											
CELSR3	1951	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48697053	48697053	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CELSR3	NM_001407	exon1	c.T3015A	p.D1005E	ATCCCCATCTTCA	.	113	20	142	1	.	523	T	48697053	A	T	48697053	3	4	82	1	0	0	0	0	1	0	0	0	3223	214	8	4	7063	4	CELSR3	3	48697053	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	21945763	48697053	149325377	93	10855											
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52084943	52084943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DUSP7	NM_001947	exon3	c.G1148A	p.R383Q	AGCGTCCGCTCAA	.	234	47	304	0	.	659	T	52084943	C	T	52084943	3	4	82	1	0	0	0	0	1	0	0	0	4830	652	23	1	115	1	DUSP7	3	52084943	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3387890	52084943	145937487	94	10856											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52441334	52441334	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BAP1	NM_004656	exon8	c.438-2A>T	.	CGGGCCTGGGGAA	.	98	60	106	0	.	1032	A	52441334	T	A	52441334	5	1	82	1	0	0	0	0	0	0	1	0	1311	1594	55	4	1797	4	BAP1	3	52441334	Splice_Site	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	356391	52441334	145581096	95	10857											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62522190	62522191	+	Missense_Mutation	DNP	TG	TG	AT	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	.	.	.	p.H678I	GAAGCGTGGTCAA	.	135	62	211	0	.	.	AT	62522191	TG	AT	62522190	3	1	82	1	0	0	0	0	1	0	0	0	2570	1696	59	4	2177	4	CADPS	3	62522190	Missense_Mutation	DNP	TG	TCGA-DD-A3A9-01A-11D-A25V-10	10080856	62522190	135500240	96	10858											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64640083	64640083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADAMTS9	NM_182920	exon8	c.G1262A	p.S421N	TCTTCACTAATAG	.	176	31	192	0	.	230	T	64640083	C	T	64640083	3	4	82	1	0	0	0	0	1	0	0	0	273	565	20	3	4673	3	ADAMTS9	3	64640083	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2117893	64640083	133382347	97	10859											
HTR1F	3355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	88040703	88040703	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HTR1F	NM_000866	exon2	c.C804T	p.L268L	AAGTCTCAGGTCT	.	50	8	59	0	.	93	T	88040703	C	T	88040703	2	4	82	1	0	0	0	0	0	0	0	1	7440	813	29	3		3	HTR1F	3	88040703	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	23400620	88040703	109981727	98	10860											
PROS1	5627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93624977	93624977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PROS1	NM_000313	exon5	c.C357A	p.D119E	ACACTGGTCTGGA	.	201	30	191	1	.	153	T	93624977	G	T	93624977	3	4	82	1	0	0	0	0	1	0	0	0	12558	1252	44	3	1717	3	PROS1	3	93624977	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5584274	93624977	104397453	99	10861											
STX19	415117	hgsc.bcm.edu;broad.mit.edu	37	3	93733261	93733261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	STX19	NM_001001850	exon2	c.T853G	p.C285G	ACCAACAACACAG	.	62	4	46	0	.	90	C	93733261	A	C	93733261	3	2	82	1	0	0	0	0	1	0	0	0	15341	130	5	5	35	5	STX19	3	93733261	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	108284	93733261	104289169	100	10862											
GABRR3	200959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97753825	97753825	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRR3	.	.	.	.	AAGCCAGGACCAT	.	98	15	81	0	.	68	A	97753825	G	A	97753825	1	1	82	0	1	0	0	0	0	0	0	0	6178	991	35	3		3	GABRR3	3	97753825	RNA	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4020564	97753825	100268605	101	10863											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	108178291	108178291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MYH15	NM_014981	exon19	c.C1998A	p.N666K	ATTCAGGTTTTCC	.	72	6	61	0	.	73	T	108178291	G	T	108178291	3	4	82	1	0	0	0	0	1	0	0	0	10034	1252	44	3	3938	3	MYH15	3	108178291	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	10424466	108178291	89844139	102	10864											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	108833252	108833252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MORC1	NM_014429	exon2	c.C98T	p.A33V	AATTCAGCCAGTG	.	93	12	109	0	.	98	A	108833252	G	A	108833252	3	1	82	1	0	0	0	0	1	0	0	0	9701	971	34	3	2964	3	MORC1	3	108833252	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	654961	108833252	89189178	103	10865											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113720448	113720448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KIAA1407	NM_020817	exon13	c.G2157T	p.K719N	CATTTTCTTCAGT	.	330	45	323	0	.	92	A	113720448	C	A	113720448	3	1	82	1	0	0	0	0	1	0	0	0	8229	912	32	3	673	3	KIAA1407	3	113720448	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4887196	113720448	84301982	104	10866											
C3orf30	152405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	118867060	118867060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C3orf30	NM_152539	exon2	c.T1432C	p.Y478H	AAGGGTTATCATA	.	134	18	98	0	.	92	C	118867060	T	C	118867060	3	2	82	1	0	0	0	0	1	0	0	0	2220	1754	61	2	1438	2	C3orf30	3	118867060	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5146612	118867060	79155370	105	10867											
DNAJB8	165721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128181553	128181553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNAJB8	NM_153330	exon3	c.T536G	p.F179C	GACTTGAACCCCG	.	171	22	136	0	.	226	C	128181553	A	C	128181553	3	2	82	1	0	0	0	0	1	0	0	0	4626	246	9	5	166	5	DNAJB8	3	128181553	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	9314493	128181553	69840877	106	10868											
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	138256157	138256157	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CEP70	NM_024491	exon7	c.G498T	p.T166T	TTGCTCCGTTCGT	.	92	8	97	0	.	69	A	138256157	C	A	138256157	2	1	82	1	0	0	0	0	0	0	0	1	3259	639	23	1		1	CEP70	3	138256157	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	10074604	138256157	59766273	107	10869											
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141497352	141497352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRK7	NM_139209	exon1	c.A226T	p.T76S	CTAGCCACAGTGC	.	82	11	97	0	.	522	T	141497352	A	T	141497352	3	4	82	1	0	0	0	0	1	0	0	0	6794	159	6	4	228	4	GRK7	3	141497352	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3241195	141497352	56525078	108	10870											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151161336	151161336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IGSF10	NM_178822	exon5	c.C5399A	p.T1800K	TCAACCGTCACCA	.	348	58	357	0	.	102	T	151161336	G	T	151161336	3	4	82	1	0	0	0	0	1	0	0	0	7597	1145	40	1	2528	1	IGSF10	3	151161336	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	9663984	151161336	46861094	109	10871											
SLC33A1	9197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155571758	155571758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC33A1	NM_004733	exon1	c.G29A	p.S10N	CGGCTGCTGTCCT	.	177	79	188	0	.	156	T	155571758	C	T	155571758	3	4	82	1	0	0	0	0	1	0	0	0	14566	797	28	3	1644	3	SLC33A1	3	155571758	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4410422	155571758	42450672	110	10872											
C3orf55	152078	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	157296101	157296101	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001099777	exon5	c.C336T	p.F112F	TCATTTCTGCTGT	.	241	77	269	2	.	.	T	157296101	C	T	157296101	2	4	82	1	0	0	0	0	0	0	0	1	2234	912	32	3		3	C3orf55	3	157296101	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1724343	157296101	40726329	111	10873											
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172048416	172048416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FNDC3B	NM_001135095	exon13	c.A1465T	p.T489S	GGCATCACATGGG	.	218	38	197	0	.	155	T	172048416	A	T	172048416	3	4	82	1	0	0	0	0	1	0	0	0	5970	159	6	4	1511	4	FNDC3B	3	172048416	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	14752315	172048416	25974014	112	10874											
GNB4	59345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179119095	179119095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GNB4	NM_021629	exon10	c.G929C	p.G310A	TCATGACCAGCAA	.	228	31	241	0	.	228	G	179119095	C	G	179119095	3	3	82	1	0	0	0	0	1	0	0	0	6520	507	18	4	97	4	GNB4	3	179119095	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	7070679	179119095	18903335	113	10875											
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	182788806	182788806	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MCCC1	NM_020166	exon7	c.A742T	p.K248X	CAAACTTCTCGAT	.	181	26	150	0	.	92	A	182788806	T	A	182788806	4	1	82	1	0	0	0	0	0	1	0	0	9374	1792	62	4	1487	4	MCCC1	3	182788806	Nonsense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3669711	182788806	15233624	114	10876											
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195507288	195507288	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUC4	NM_018406	exon2	c.A11163G	p.V3721V	TGTAGATACTGAG	.	507	49	559	1	.	90	C	195507288	T	C	195507288	2	2	82	1	0	0	0	0	0	0	0	1	9978	1393	49	2		2	MUC4	3	195507288	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	12718482	195507288	2515142	115	10877											
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10445461	10445461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF518B	NM_053042	exon3	c.G2492A	p.G831E	ATTGGCCCCCTTT	.	136	27	127	0	.	72	T	10445461	C	T	10445461	3	4	82	1	0	0	0	0	1	0	0	0	17960	623	22	3	736	3	ZNF518B	4	10445461	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		10445461	180708815	116	10878											
FAM114A1	92689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38910313	38910313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM114A1	NM_138389	exon7	c.A758G	p.K253R	GGACCAAGACGCT	.	147	22	141	0	.	69	G	38910313	A	G	38910313	3	3	82	1	0	0	0	0	1	0	0	0	5403	72	3	2	776	2	FAM114A1	4	38910313	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	28464852	38910313	152243963	117	10879											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46967002	46967002	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRA4	NM_000809	exon8	c.T1119A	p.P373P	GGCTTCAGGATGC	.	115	12	128	0	.	156	T	46967002	A	T	46967002	2	4	82	1	0	0	0	0	0	0	0	1	6163	175	7	4		4	GABRA4	4	46967002	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	8056689	46967002	144187274	118	10880											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48607809	48607809	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FRYL	NM_015030	exon11	c.A783T	p.I261I	ATGTTTTATATCT	.	142	32	149	0	.	69	A	48607809	T	A	48607809	2	1	82	1	0	0	0	0	0	0	0	1	6064	1744	61	4		4	FRYL	4	48607809	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1640807	48607809	142546467	119	10881											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62800605	62800605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LPHN3	NM_015236	exon11	c.T1956A	p.N652K	TTTGAATGCATGG	.	238	65	210	0	.	508	A	62800605	T	A	62800605	3	1	82	1	0	0	0	0	1	0	0	0	8917	1461	51	4	1998	4	LPHN3	4	62800605	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	14192796	62800605	128353671	120	10882											
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86852134	86852134	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ARHGAP24	NM_031305	exon1	c.A51T	p.S17S	AGCCTCAACTCCT	.	96	21	159	0	.	227	T	86852134	A	T	86852134	2	4	82	1	0	0	0	0	0	0	0	1	873	117	5	4		4	ARHGAP24	4	86852134	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	24051529	86852134	104302142	121	10883											
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110442311	110442311	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEC24B	NM_006323	exon13	c.C2284T	p.L762L	GTGAATCTATATG	.	62	13	112	0	.	137	T	110442311	C	T	110442311	2	4	82	1	0	0	0	0	0	0	0	1	13995	912	32	3		3	SEC24B	4	110442311	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	23590177	110442311	80711965	122	10884											
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120192951	120192951	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	USP53	NM_019050	exon15	c.A1936T	p.M646L	GATGAAATGAAGC	.	101	16	132	0	.	660	T	120192951	A	T	120192951	3	4	82	1	0	0	0	0	1	0	0	0	17081	101	4	4	1982	4	USP53	4	120192951	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	9750640	120192951	70961325	123	10885											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158257592	158257592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRIA2	NM_000826	exon11	c.T1537A	p.S513T	GACTTCTCAAAGC	.	144	45	164	0	.	515	A	158257592	T	A	158257592	3	1	82	1	0	0	0	0	1	0	0	0	6768	1551	54	4	1579	4	GRIA2	4	158257592	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	38064641	158257592	32896684	124	10886											
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164061471	164061471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NAF1	NM_138386	exon5	c.A782G	p.H261R	TCAATGTGATCTG	.	55	10	52	0	.	70	C	164061471	T	C	164061471	3	2	82	1	0	0	0	0	1	0	0	0	10140	1696	59	2	859	2	NAF1	4	164061471	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5803879	164061471	27092805	125	10887											
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166976353	166976353	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TLL1	NM_012464	exon13	c.T1650C	p.N550N	CTCCAATACTTTG	.	69	14	112	0	.	158	C	166976353	T	C	166976353	2	2	82	1	0	0	0	0	0	0	0	1	15942	1403	49	2		2	TLL1	4	166976353	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	2914882	166976353	24177923	126	10888											
ASB5	140458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177190077	177190077	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ASB5	NM_080874	exon1	c.A183G	p.V61V	TTGGGTTACTCCA	.	91	14	120	0	.	228	C	177190077	T	C	177190077	2	2	82	1	0	0	0	0	0	0	0	1	1026	1741	61	2		2	ASB5	4	177190077	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	10213724	177190077	13964199	127	10889											
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186366663	186366663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC110	NM_152775	exon7	c.A2495T	p.H832L	TAATGATGCTTGA	.	31	7	33	0	.	90	A	186366663	T	A	186366663	3	1	82	1	0	0	0	0	1	0	0	0	2747	1464	51	4	10	4	CCDC110	4	186366663	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	9176586	186366663	4787613	128	10890											
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455096	187455096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MTNR1A	NM_005958	exon2	c.G800A	p.S267N	ACCATGCTGGCGG	.	129	32	113	0	.	524	T	187455096	C	T	187455096	3	4	82	1	0	0	0	0	1	0	0	0	9951	797	28	3	256	3	MTNR1A	4	187455096	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1088433	187455096	3699180	129	10891											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7743819	7743819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADCY2	NM_020546	exon15	c.T1910C	p.L637P	CGTTTCTCTTGCT	.	250	47	260	0	.	97	C	7743819	T	C	7743819	3	2	82	1	0	0	0	0	1	0	0	0	294	1551	54	2	1968	2	ADCY2	5	7743819	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		7743819	173171441	130	10892											
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13692155	13692155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNAH5	NM_001369	exon79	c.A13813G	p.T4605A	GGGCTGTCCTGAG	.	169	20	148	1	.	182	C	13692155	T	C	13692155	3	2	82	1	0	0	0	0	1	0	0	0	4604	1667	58	2	65	2	DNAH5	5	13692155	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5948336	13692155	167223105	131	10893											
GZMK	3003	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54320546	54320546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GZMK	NM_002104	exon2	c.G123A	p.M41I	ATTTATGGCCTCC	.	156	25	143	1	.	90	A	54320546	G	A	54320546	3	1	82	1	0	0	0	0	1	0	0	0	6918	1348	47	3	129	3	GZMK	5	54320546	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	40628391	54320546	126594714	132	10894											
ANKRA2	57763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72857022	72857022	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ANKRA2	NM_023039	exon3	c.A381G	p.K127K	TGACTGTTTTATG	.	241	25	216	0	.	90	C	72857022	T	C	72857022	2	2	82	1	0	0	0	0	0	0	0	1	636	1722	60	2		2	ANKRA2	5	72857022	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	18536476	72857022	108058238	133	10895											
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	77409598	77409598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AP3B1	NM_003664	exon19	c.A2227G	p.N743D	TTGAGTTCCTCTT	.	66	16	84	0	.	90	C	77409598	T	C	77409598	3	2	82	1	0	0	0	0	1	0	0	0	744	1783	62	2	1093	2	AP3B1	5	77409598	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	4552576	77409598	103505662	134	10896											
MCTP1	79772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94114816	94114816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MCTP1	NM_024717	exon19	c.A2609T	p.K870M	ATTACCTTGTCAT	.	234	36	186	0	.	92	A	94114816	T	A	94114816	3	1	82	1	0	0	0	0	1	0	0	0	9400	1623	56	4	410	4	MCTP1	5	94114816	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	16705218	94114816	86800444	135	10897											
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94749823	94749823	+	Missense_Mutation	SNP	G	G	T	rs202064996	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM81B	NM_152548	exon4	c.G466T	p.A156S	TCGCTCGCCAGGA	.	189	36	158	0	G|0.999;A|0.000	92	T	94749823	G	T	94749823	3	4	82	1	0	0	0	0	1	0	0	0	5629	1087	38	1	480	1	FAM81B	5	94749823	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	635007	94749823	86165437	136	10898											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	98212136	98212136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CHD1	NM_001270	exon23	c.A3364G	p.N1122D	TAATATTCTCCCG	.	107	28	96	0	.	274	C	98212136	T	C	98212136	3	2	82	1	0	0	0	0	1	0	0	0	3323	1783	62	2	1820	2	CHD1	5	98212136	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3462313	98212136	82703124	137	10899											
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115811300	115811300	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEMA6A	NM_020796	exon17	c.1650-1G>C	.	GTCAGTCTTTTAA	.	80	8	70	0	.	92	G	115811300	C	G	115811300	5	3	82	1	0	0	0	0	0	0	1	0	14039	927	32	4	1459	4	SEMA6A	5	115811300	Splice_Site	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	17599164	115811300	65103960	138	10900											
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115838016	115838016	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEMA6A	NM_020796	exon3	c.108delA	p.K36fs	ATACTGTTTTGTA	.	323	98	296	1	.	92	-	115838016	T	-	115838016	7	5	82	1	0	1	0	1	0	0	0	0	14039	1722	60	0	3052	0	SEMA6A	5	115838016	Frame_Shift_Del	DEL	T	TCGA-DD-A3A9-01A-11D-A25V-10	26716	115838016	65077244	139	10901											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123983011	123983011	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF608	NM_020747	exon4	c.T3066C	p.S1022S	GCTCCCACTATTT	.	170	31	161	0	.	229	G	123983011	A	G	123983011	2	3	82	1	0	0	0	0	0	0	0	1	18031	156	6	2		2	ZNF608	5	123983011	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	8144995	123983011	56932249	140	10902											
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133914456	133914456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PHF15	NM_015288	exon11	c.C1822T	p.P608S	CCACCACCACCAC	.	74	19	92	0	.	90	T	133914456	C	T	133914456	3	4	82	1	0	0	0	0	1	0	0	0	11826	507	18	3	1860	3	PHF15	5	133914456	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	9931445	133914456	47000804	141	10903											
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	134121190	134121190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DDX46	NM_014829	exon11	c.C1378G	p.Q460E	GCTTTACAGATTA	.	134	11	88	0	.	227	G	134121190	C	G	134121190	3	3	82	1	0	0	0	0	1	0	0	0	4364	479	17	4	1420	4	DDX46	5	134121190	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	206734	134121190	46794070	142	10904											
WNT8A	7478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137426301	137426301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	WNT8A	NM_058244	exon6	c.G595C	p.A199P	CAGCTGGCTGAAT	.	144	17	124	0	.	524	C	137426301	G	C	137426301	3	2	82	1	0	0	0	0	1	0	0	0	17393	1203	42	4	617	4	WNT8A	5	137426301	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3305111	137426301	43488959	143	10905											
CTNNA1	1495	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	138266252	138266252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CTNNA1	NM_001903	exon15	c.G2101T	p.E701X	GATGCTGAAGTGT	.	304	40	310	1	.	671	T	138266252	G	T	138266252	4	4	82	1	0	0	0	0	0	1	0	0	4012	1291	45	3	2155	3	CTNNA1	5	138266252	Nonsense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	839951	138266252	42649008	144	10906											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139219614	139219614	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PSD2	NM_032289	exon14	c.G1971A	p.E657E	GCAGGAGGAGCAA	.	159	18	173	0	.	91	A	139219614	G	A	139219614	2	1	82	1	0	0	0	0	0	0	0	1	12647	991	35	3		3	PSD2	5	139219614	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	953362	139219614	41695646	145	10907											
NRG2	9542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139239488	139239488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NRG2	NM_013982	exon6	c.G1199A	p.G400E	TCAAATCCAAGGT	.	244	32	213	0	.	526	T	139239488	C	T	139239488	3	4	82	1	0	0	0	0	1	0	0	0	10648	855	30	3	1401	3	NRG2	5	139239488	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	19874	139239488	41675772	146	10908											
PCDHAC2	56134	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140348722	140348722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDHAC2	NM_031883	exon1	c.T2371A	p.Y791N	AAGACCTACTGCT	.	165	31	148	1	.	26	A	140348722	T	A	140348722	3	1	82	1	0	0	0	0	1	0	0	0	11533	1522	53	4	2373	4	PCDHAC2	5	140348722	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1109234	140348722	40566538	147	10909											
PCDHB1	29930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140432602	140432602	+	Missense_Mutation	SNP	C	C	A	rs116101801	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDHB1	NM_013340	exon1	c.C1547A	p.A516E	TCTACGCGCTGAG	.	141	40	130	1	C|0.999;T|0.001	90	A	140432602	C	A	140432602	3	1	82	1	0	0	0	0	1	0	0	0	11534	768	27	1	1549	1	PCDHB1	5	140432602	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	83880	140432602	40482658	148	10910											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140711003	140711003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDHGA1	NM_018912	exon1	c.T752C	p.V251A	TAAATGTCCCCGA	.	62	14	65	0	.	137	C	140711003	T	C	140711003	3	2	82	1	0	0	0	0	1	0	0	0	11550	1667	58	2	754	2	PCDHGA1	5	140711003	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	278401	140711003	40204257	149	10911											
PCDH1	5097	hgsc.bcm.edu;bcgsc.ca	37	5	141248811	141248811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDH1	NM_032420	exon2	c.A226T	p.S76C	CGAGGCTCCCAAT	.	102	6	121	0	.	95	A	141248811	T	A	141248811	3	1	82	1	0	0	0	0	1	0	0	0	11506	1551	54	4	3587	4	PCDH1	5	141248811	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	537808	141248811	39666449	150	10912											
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143853260	143853260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCTD16	NM_020768	exon4	c.C870G	p.C290W	CGATTGCTGCTGC	.	356	54	323	0	.	137	G	143853260	C	G	143853260	3	3	82	1	0	0	0	0	1	0	0	0	8103	805	28	4	876	4	KCTD16	5	143853260	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2604449	143853260	37062000	151	10913											
SPINK6	404203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	147593570	147593570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPINK6	NM_205841	exon3	c.C179T	p.A60V	AATGTGCCTTCTG	.	73	12	66	0	.	91	T	147593570	C	T	147593570	3	4	82	1	0	0	0	0	1	0	0	0	15062	739	26	3	189	3	SPINK6	5	147593570	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3740310	147593570	33321690	152	10914											
SLC36A2	153201	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150715069	150715069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC36A2	NM_181776	exon6	c.T565C	p.S189P	CATTGGAATAGCA	.	225	72	183	1	.	91	G	150715069	A	G	150715069	3	3	82	1	0	0	0	0	1	0	0	0	14594	246	9	2	906	2	SLC36A2	5	150715069	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3121499	150715069	30200191	153	10915											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150945319	150945319	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAT2	NM_001447	exon1	c.C3174T	p.D1058D	GTCATCGTCCTGG	.	136	20	155	0	.	96	A	150945319	G	A	150945319	2	1	82	1	0	0	0	0	0	0	0	1	5690	1136	40	1		1	FAT2	5	150945319	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	230250	150945319	29969941	154	10916											
NMUR2	56923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151775082	151775082	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NMUR2	NM_020167	exon3	c.G875C	p.S292T	ACAAAGCTGAAGA	.	322	57	296	0	.	526	G	151775082	C	G	151775082	3	3	82	1	0	0	0	0	1	0	0	0	10507	797	28	4	380	4	NMUR2	5	151775082	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	829763	151775082	29140178	155	10917											
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158250310	158250310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EBF1	NM_024007	exon8	c.A652G	p.T218A	TGACTGTCGTAGA	.	135	20	93	0	.	92	C	158250310	T	C	158250310	3	2	82	1	0	0	0	0	1	0	0	0	4880	1667	58	2	1159	2	EBF1	5	158250310	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	6475228	158250310	22664950	156	10918											
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161116665	161116665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRA6	NM_000811	exon6	c.A553G	p.I185V	GAAATCATATATA	.	78	12	72	0	.	163	G	161116665	A	G	161116665	3	3	82	1	0	0	0	0	1	0	0	0	6165	217	8	2	575	2	GABRA6	5	161116665	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2866355	161116665	19798595	157	10919											
DOCK2	1794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169504811	169504811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DOCK2	NM_004946	exon48	c.G4964A	p.C1655Y	CTGACTGCAGCAC	.	55	10	62	1	.	97	A	169504811	G	A	169504811	3	1	82	1	0	0	0	0	1	0	0	0	4687	1319	46	3	5154	3	DOCK2	5	169504811	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	8388146	169504811	11410449	158	10920											
SFXN1	94081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	174937183	174937183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SFXN1	NM_022754	exon4	c.G407A	p.R136K	CCAACAGAAGTGG	.	176	20	178	1	.	91	A	174937183	G	A	174937183	3	1	82	1	0	0	0	0	1	0	0	0	14194	942	33	3	417	3	SFXN1	5	174937183	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5432372	174937183	5978077	159	10921											
EIF4E1B	253314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176072878	176072878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001099408	exon9	c.A626G	p.K209R	TATACAAAGAGCG	.	261	49	229	1	.	.	G	176072878	A	G	176072878	3	3	82	1	0	0	0	0	1	0	0	0	5029	14	1	2	652	2	EIF4E1B	5	176072878	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1135695	176072878	4842382	160	10922											
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178359572	178359572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZFP2	NM_030613	exon5	c.A1258G	p.I420V	GCCTTCATTAAGA	.	52	7	50	0	.	93	G	178359572	A	G	178359572	3	3	82	1	0	0	0	0	1	0	0	0	17638	217	8	2	1260	2	ZFP2	5	178359572	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2286694	178359572	2555688	161	10923											
FOXC1	2296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	1612242	1612242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FOXC1	NM_001453	exon1	c.C1562T	p.S521F	ACAACTCTCCAGT	.	238	21	137	0	.	227	T	1612242	C	T	1612242	3	4	82	1	0	0	0	0	1	0	0	0	5994	913	32	3	1564	3	FOXC1	6	1612242	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		1612242	169502825	162	10924											
NRSN1	140767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24146149	24146149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NRSN1	NM_080723	exon4	c.A563G	p.N188S	TTCAAAATGTCCA	.	119	14	78	0	.	90	G	24146149	A	G	24146149	3	3	82	1	0	0	0	0	1	0	0	0	10662	101	4	2	569	2	NRSN1	6	24146149	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	22533907	24146149	146968918	163	10925											
GPX6	257202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	28473513	28473513	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPX6	.	.	.	.	TTTTTCTCCATTC	.	158	10	117	0	.	95	A	28473513	T	A	28473513	2	1	82	1	0	0	0	0	0	0	0	1	6744	1538	54	4		4	GPX6	6	28473513	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	4327364	28473513	142641554	164	10926											
HLA-E	3133	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30457636	30457636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HLA-E	NM_005516	exon2	c.G198T	p.M66I	GAGGATGGTGCCG	.	86	29	78	1	.	516	T	30457636	G	T	30457636	3	4	82	1	0	0	0	0	1	0	0	0	7210	1348	47	3	204	3	HLA-E	6	30457636	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1984123	30457636	140657431	165	10927											
DPCR1	135656	broad.mit.edu;ucsc.edu	37	6	30918300	30918300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DPCR1	NM_080870	exon2	c.C2059A	p.P687T	AGGACCCCATTTG	.	209	33	136	2	.	90	A	30918300	C	A	30918300	3	1	82	1	0	0	0	0	1	0	0	0	4712	623	22	3	2065	3	DPCR1	6	30918300	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	460664	30918300	140196767	166	10928											
NEU1	4758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31827993	31827993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NEU1	NM_000434	exon5	c.A847G	p.N283D	AGTTGTTCTGGTT	.	312	39	219	0	.	91	C	31827993	T	C	31827993	3	2	82	1	0	0	0	0	1	0	0	0	10341	1783	62	2	408	2	NEU1	6	31827993	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	909693	31827993	139287074	167	10929											
C2	717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31911759	31911759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C2	NM_000063	exon14	c.G1799A	p.C600Y	GCACCTGTAGGGA	.	135	19	110	0	.	92	A	31911759	G	A	31911759	3	1	82	1	0	0	0	0	1	0	0	0	2074	1377	48	3	1930	3	C2	6	31911759	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	83766	31911759	139203308	168	10930											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32188291	32188291	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NOTCH4	NM_004557	exon6	c.A1050T	p.T350T	ACAGCTTGTGCCG	.	125	15	60	0	.	1321	A	32188291	T	A	32188291	2	1	82	1	0	0	0	0	0	0	0	1	10551	1799	63	4		4	NOTCH4	6	32188291	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	276532	32188291	138926776	169	10931											
VPS52	6293	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33236937	33236937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VPS52	NM_022553	exon6	c.G402C	p.Q134H	GTCACTCTGAAAA	.	285	49	199	1	.	95	G	33236937	C	G	33236937	3	3	82	1	0	0	0	0	1	0	0	0	17211	912	32	4	1829	4	VPS52	6	33236937	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1048646	33236937	137878130	170	10932											
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36449534	36449534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCTD20	NM_173562	exon6	c.A854G	p.Q285R	ATTCCCAAAGTAG	.	170	23	101	0	.	92	G	36449534	A	G	36449534	3	3	82	1	0	0	0	0	1	0	0	0	8108	130	5	2	872	2	KCTD20	6	36449534	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3212597	36449534	134665533	171	10933											
CPNE5	57699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36730726	36730726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CPNE5	NM_020939	exon12	c.G823A	p.A275T	CACGGGCCAGCTC	.	166	46	123	0	.	91	T	36730726	C	T	36730726	3	4	82	1	0	0	0	0	1	0	0	0	3815	739	26	3	998	3	CPNE5	6	36730726	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	281192	36730726	134384341	172	10934											
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	37606362	37606362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MDGA1	NM_153487	exon15	c.A2618G	p.N873S	CACACATTGCCCT	.	109	9	73	0	.	91	C	37606362	T	C	37606362	3	2	82	1	0	0	0	0	1	0	0	0	9406	1493	52	2	261	2	MDGA1	6	37606362	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	875636	37606362	133508705	173	10935											
MDGA1	266727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37611590	37611590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MDGA1	NM_153487	exon14	c.A2531G	p.H844R	CCGATGTGTTTCC	.	253	24	167	1	.	91	C	37611590	T	C	37611590	3	2	82	1	0	0	0	0	1	0	0	0	9406	1696	59	2	352	2	MDGA1	6	37611590	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5228	37611590	133503477	174	10936											
TREML4	285852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41196565	41196565	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TREML4	NM_198153	exon2	c.T177C	p.S59S	GACATCTCCAAGT	.	125	17	80	0	.	90	C	41196565	T	C	41196565	2	2	82	1	0	0	0	0	0	0	0	1	16471	1538	54	2		2	TREML4	6	41196565	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3584975	41196565	129918502	175	10937											
RSPH9	221421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43623341	43623341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RSPH9	NM_152732	exon3	c.C436G	p.Q146E	ATTGACCAGATTG	.	114	9	69	0	.	92	G	43623341	C	G	43623341	3	3	82	1	0	0	0	0	1	0	0	0	13708	595	21	4	446	4	RSPH9	6	43623341	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2426776	43623341	127491726	176	10938											
SUPT3H	8464	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44797582	44797582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SUPT3H	NM_181356	exon13	c.A958T	p.R320W	CATTCCTGCGGTA	.	288	28	171	1	.	92	A	44797582	T	A	44797582	3	1	82	1	0	0	0	0	1	0	0	0	15394	1579	55	4	32	4	SUPT3H	6	44797582	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1174241	44797582	126317485	177	10939											
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46823751	46823751	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPR116	NM_015234	exon20	c.T3921C	p.S1307S	TATTGGAGAACTC	.	547	75	380	0	.	91	G	46823751	A	G	46823751	2	3	82	1	0	0	0	0	0	0	0	1	6633	291	11	2		2	GPR116	6	46823751	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2026169	46823751	124291316	178	10940											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51609291	51609291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKHD1	NM_170724	exon60	c.A10048G	p.R3350G	ATTTTCTTGGACT	.	176	25	132	0	.	603	C	51609291	T	C	51609291	3	2	82	1	0	0	0	0	1	0	0	0	11971	1617	56	2	2247	2	PKHD1	6	51609291	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	4785540	51609291	119505776	179	10941											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	51917941	51917941	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKHD1	NM_170724	exon21	c.C2073T	p.L691L	CAGAGGGAGAAGG	.	142	13	86	0	.	603	A	51917941	G	A	51917941	2	1	82	1	0	0	0	0	0	0	0	1	11971	1161	41	3		3	PKHD1	6	51917941	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	308650	51917941	119197126	180	10942											
LRRC1	55227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53764548	53764548	+	Missense_Mutation	SNP	A	A	G	rs200563845		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LRRC1	NM_018214	exon8	c.A646G	p.I216V	TAGGAAATAGGAA	.	122	17	95	0	A|0.999;G|0.000	91	G	53764548	A	G	53764548	3	3	82	1	0	0	0	0	1	0	0	0	8966	101	4	2	676	2	LRRC1	6	53764548	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1846607	53764548	117350519	181	10943											
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63990576	63990576	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LGSN	NM_016571	exon4	c.A880T	p.R294W	ATTTCCTTGCCAC	.	145	17	104	0	.	227	A	63990576	T	A	63990576	3	1	82	1	0	0	0	0	1	0	0	0	8759	1608	56	4	653	4	LGSN	6	63990576	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	10226028	63990576	107124491	182	10944											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75884975	75884975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL12A1	NM_004370	exon13	c.T2489C	p.M830T	AATTTCATAGTAG	.	172	31	166	0	.	142	G	75884975	A	G	75884975	3	3	82	1	0	0	0	0	1	0	0	0	3669	217	8	2	6918	2	COL12A1	6	75884975	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	11894399	75884975	95230092	183	10945											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90581017	90581017	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CASP8AP2	NM_001137667	exon9	c.C5802T	p.D1934D	TGATGACCGGGAA	.	121	23	161	0	.	24	T	90581017	C	T	90581017	2	4	82	1	0	0	0	0	0	0	0	1	2678	506	18	3		3	CASP8AP2	6	90581017	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	14696042	90581017	80534050	184	10946											
POU3F2	5454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99283906	99283907	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	.	.	.	p.S386*	TCACCTCCCTCGC	.	129	48	78	0	.	.	AA	99283907	CC	AA	99283906	4	1	82	1	0	0	0	0	0	1	0	0	12275	855	30	3	1159	3	POU3F2	6	99283906	Nonsense_Mutation	DNP	CC	TCGA-DD-A3A9-01A-11D-A25V-10	8702889	99283906	71831161	185	10947											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	100960788	100960788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ASCC3	NM_006828	exon40	c.A6082T	p.N2028Y	AGAAATTCCATGC	.	118	17	74	0	.	96	A	100960788	T	A	100960788	3	1	82	1	0	0	0	0	1	0	0	0	1033	1783	62	4	538	4	ASCC3	6	100960788	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1676882	100960788	70154279	186	10948											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106987360	106987360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AIM1	NM_001624	exon7	c.G3577A	p.D1193N	TTCTGGGATACAG	.	176	22	133	0	.	139	A	106987360	G	A	106987360	3	1	82	1	0	0	0	0	1	0	0	0	430	1174	41	3	3603	3	AIM1	6	106987360	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	6026572	106987360	64127707	187	10949											
OSTM1	28962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108372335	108372335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OSTM1	NM_014028	exon4	c.A683T	p.Y228F	GTTTTGTATGCTT	.	228	31	172	0	.	68	A	108372335	T	A	108372335	3	1	82	1	0	0	0	0	1	0	0	0	11298	1638	57	4	333	4	OSTM1	6	108372335	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1384975	108372335	62742732	188	10950											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	117248312	117248312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RFX6	NM_173560	exon17	c.C2008T	p.P670S	GTGGGCCCAGTAC	.	195	15	146	0	.	93	T	117248312	C	T	117248312	3	4	82	1	0	0	0	0	1	0	0	0	13267	623	22	3	2074	3	RFX6	6	117248312	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	8875977	117248312	53866755	189	10951											
RNF146	81847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127607830	127607830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RNF146	NM_001242850	exon3	c.C72T	p.S24S	CGAGTCCTGTTCT	.	326	34	207	0	.	226	T	127607830	C	T	127607830	2	4	82	1	0	0	0	0	0	0	0	1	13448	668	24	3		3	RNF146	6	127607830	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	10359518	127607830	43507237	190	10952											
KIAA1244	57221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138531046	138531046	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KIAA1244	NM_020340	exon4	c.220-1G>A	.	TTTACAGAAGCTT	.	366	41	250	1	.	228	A	138531046	G	A	138531046	5	1	82	1	0	0	0	0	0	0	1	0	8217	956	33	3	233	3	KIAA1244	6	138531046	Splice_Site	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	10923216	138531046	32584021	191	10953											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138655566	138655566	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KIAA1244	NM_020340	exon33	c.C5583T	p.D1861D	TGAAGACATCTTT	.	106	11	79	0	.	228	T	138655566	C	T	138655566	2	4	82	1	0	0	0	0	0	0	0	1	8217	477	17	3		3	KIAA1244	6	138655566	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	124520	138655566	32459501	192	10954											
GRM1	2911	hgsc.bcm.edu;broad.mit.edu	37	6	146755591	146755591	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRM1	NM_000838	exon9	c.C3244T	p.L1082L	CTGCAGCTGAGCA	.	44	5	41	0	.	1080	T	146755591	C	T	146755591	2	4	82	1	0	0	0	0	0	0	0	1	6796	796	28	3		3	GRM1	6	146755591	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	8100025	146755591	24359476	193	10955											
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148841002	148841002	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SASH1	NM_015278	exon10	c.G1182A	p.K394K	GATGAAGAAGGGT	.	22	7	19	0	.	90	A	148841002	G	A	148841002	2	1	82	1	0	0	0	0	0	0	0	1	13848	933	33	3		3	SASH1	6	148841002	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2085411	148841002	22274065	194	10956											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152740828	152740828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYNE1	NM_033071	exon40	c.A5318G	p.E1773G	TGGTGTTCAGCAA	.	165	15	140	0	.	607	C	152740828	T	C	152740828	3	2	82	1	0	0	0	0	1	0	0	0	15442	1783	62	2	21597	2	SYNE1	6	152740828	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3899826	152740828	18374239	195	10957											
PLG	5340	hgsc.bcm.edu;broad.mit.edu	37	6	161137785	161137785	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLG	NM_000301	exon7	c.C777T	p.I259I	TGACATCCCCCGC	.	112	5	76	0	.	94	T	161137785	C	T	161137785	2	4	82	1	0	0	0	0	0	0	0	1	12086	845	30	3		3	PLG	6	161137785	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	8396957	161137785	9977282	196	10958											
C6orf118	168090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165715083	165715083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C6orf118	NM_144980	exon2	c.C728T	p.A243V	TGGCCCGCGGCCG	.	122	14	109	0	.	90	A	165715083	G	A	165715083	3	1	82	1	0	0	0	0	1	0	0	0	2323	1087	38	1	713	1	C6orf118	6	165715083	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4577298	165715083	5399984	197	10959											
GPR31	2853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	167570796	167570796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPR31	NM_005299	exon1	c.T524A	p.I175N	CAGATGATGCTGA	.	95	6	80	0	.	90	T	167570796	A	T	167570796	3	4	82	1	0	0	0	0	1	0	0	0	6687	333	12	4	438	4	GPR31	6	167570796	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1855713	167570796	3544271	198	10960											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	47933628	47933628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKD1L1	NM_138295	exon15	c.G2300A	p.S767N	TAGTTGCTGTACA	.	66	6	86	0	.	145	T	47933628	C	T	47933628	3	4	82	1	0	0	0	0	1	0	0	0	11964	797	28	3	6421	3	PKD1L1	7	47933628	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		47933628	111205035	199	10961											
SEMA3C	10512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80432091	80432091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEMA3C	NM_006379	exon9	c.A806G	p.D269G	CCAGTGTCATTCT	.	68	12	76	1	.	515	C	80432091	T	C	80432091	3	2	82	1	0	0	0	0	1	0	0	0	14026	1667	58	2	1489	2	SEMA3C	7	80432091	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	32498463	80432091	78706572	200	10962											
CLDN12	9069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90042146	90042146	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CLDN12	NM_012129	exon3	c.A156G	p.T52T	TTACACAGGCCTG	.	252	32	230	1	.	90	G	90042146	A	G	90042146	2	3	82	1	0	0	0	0	0	0	0	1	3474	175	7	2		2	CLDN12	7	90042146	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	9610055	90042146	69096517	201	10963											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92905597	92905597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC132	NM_024553	exon12	c.C922A	p.Q308K	AAGCTGCAATATA	.	122	27	113	0	.	90	A	92905597	C	A	92905597	3	1	82	1	0	0	0	0	1	0	0	0	2767	711	25	3	968	3	CCDC132	7	92905597	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2863451	92905597	66233066	202	10964											
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95614244	95614244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DYNC1I1	NM_004411	exon8	c.A749G	p.D250G	ATTCCGACATCTT	.	70	12	73	0	.	94	G	95614244	A	G	95614244	3	3	82	1	0	0	0	0	1	0	0	0	4842	275	10	2	775	2	DYNC1I1	7	95614244	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2708647	95614244	63524419	203	10965											
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112102235	112102235	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IFRD1	NM_001197080	exon7	c.647+1G>A	.	TGAGATGTATGTA	.	71	8	67	0	.	91	A	112102235	G	A	112102235	5	1	82	1	0	0	0	0	0	0	1	0	7553	1391	48	3	824	3	IFRD1	7	112102235	Splice_Site	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	16487991	112102235	47036428	204	10966											
C7orf60	154743	broad.mit.edu;mdanderson.org	37	7	112579749	112579749	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C7orf60	NM_152556	exon1	c.G57A	p.P19P	AGTGTTCGGGGAC	.	31	6	34	0	.	93	T	112579749	C	T	112579749	2	4	82	1	0	0	0	0	0	0	0	1	2407	871	31	1		1	C7orf60	7	112579749	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	477514	112579749	46558914	205	10967											
CCDC136	64753	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128445575	128445575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC136	NM_001201372	exon7	c.C1059A	p.N353K	GAAGAACAAGGTA	.	77	20	84	1	.	24	A	128445575	C	A	128445575	3	1	82	1	0	0	0	0	1	0	0	0	2770	477	17	3	967	3	CCDC136	7	128445575	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	15865826	128445575	30693088	206	10968											
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150698351	150698351	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NOS3	NM_001160111	exon10	c.C1266T	p.A422A	CCACGCCGCCACG	.	96	18	88	0	.	1011	T	150698351	C	T	150698351	2	4	82	1	0	0	0	0	0	0	0	1	10544	639	23	1		1	NOS3	7	150698351	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	22252776	150698351	8440312	207	10969											
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	150773389	150773389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC4A2	NM_003040	exon23	c.G3661A	p.A1221T	AACGAGGCAGAGC	.	116	21	97	0	.	90	A	150773389	G	A	150773389	3	1	82	1	0	0	0	0	1	0	0	0	14654	1203	42	3	3747	3	SLC4A2	7	150773389	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	75038	150773389	8365274	208	10970											
RP1L1	94137	hgsc.bcm.edu;bcgsc.ca	37	8	10465934	10465934	+	Missense_Mutation	SNP	T	T	C	rs202056828		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RP1L1	NM_178857	exon4	c.A5674G	p.T1892A	CTGGGGTCTCTAC	.	56	11	87	0	.	139	C	10465934	T	C	10465934	3	2	82	1	0	0	0	0	1	0	0	0	13533	1667	58	2	1532	2	RP1L1	8	10465934	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		10465934	135898088	209	10971											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110401347	110401347	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKHD1L1	NM_177531	exon8	c.663delT	p.G221fs	TATGGGTTCTATG	.	143	26	132	0	.	145	-	110401347	T	-	110401347	7	5	82	1	0	1	0	1	0	0	0	0	11972	1712	60	0	693	0	PKHD1L1	8	110401347	Frame_Shift_Del	DEL	T	TCGA-DD-A3A9-01A-11D-A25V-10	99935413	110401347	35962675	210	10972											
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143994784	143994784	+	Silent	SNP	G	G	A	rs200388238		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CYP11B2	NM_000498	exon6	c.C1038T	p.A346A	TGCGGCGGCCAGG	.	92	15	147	0	G|0.999;A|0.001	90	A	143994784	G	A	143994784	2	1	82	1	0	0	0	0	0	0	0	1	4146	1103	39	1		1	CYP11B2	8	143994784	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	33593437	143994784	2369238	211	10973											
DMRT3	58524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	990928	990928	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DMRT3	NM_021240	exon2	c.C1342T	p.Q448X	TCAAAGCAGTCCA	.	139	19	165	0	.	516	T	990928	C	T	990928	4	4	82	1	0	0	0	0	0	1	0	0	4587	711	25	3	1348	3	DMRT3	9	990928	Nonsense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		990928	140222503	212	10974											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14824891	14824891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FREM1	NM_144966	exon12	c.A1981T	p.I661L	TAGTTATATAGGC	.	81	21	111	0	.	138	A	14824891	T	A	14824891	3	1	82	1	0	0	0	0	1	0	0	0	6044	1406	49	4	4716	4	FREM1	9	14824891	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	13833963	14824891	126388540	213	10975											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27173269	27173269	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TEK	NM_000459	exon6	c.A810G	p.G270G	CAGTGGACAAGAG	.	234	44	245	0	.	1584	G	27173269	A	G	27173269	2	3	82	1	0	0	0	0	0	0	0	1	15748	262	10	2		2	TEK	9	27173269	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	12348378	27173269	114040162	214	10976											
FXN	2395	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71668103	71668103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FXN	NM_000144	exon3	c.A311G	p.D104G	CGCTGGACTCTTT	.	69	11	87	1	.	251	G	71668103	A	G	71668103	3	3	82	1	0	0	0	0	1	0	0	0	6114	275	10	2	321	2	FXN	9	71668103	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	44494834	71668103	69545328	215	10977											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72895730	72895730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SMC5	NM_015110	exon6	c.G734T	p.R245I	ATGAAAGATATAA	.	35	5	31	0	.	229	T	72895730	G	T	72895730	3	4	82	1	0	0	0	0	1	0	0	0	14786	942	33	3	756	3	SMC5	9	72895730	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1227627	72895730	68317701	216	10978											
FAM22F	54754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	97082514	97082514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM22F	NM_017561	exon5	c.T1344C	p.C448C	CTGGGAACACAGC	.	118	24	150	0	.	68	G	97082514	A	G	97082514	2	3	82	1	0	0	0	0	0	0	0	1	5545	41	2	2		2	FAM22F	9	97082514	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	24186784	97082514	44130917	217	10979											
OR13C3	138803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107298487	107298487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR13C3	NM_001001961	exon1	c.T608C	p.I203T	TTGATAATATTAT	.	98	19	90	0	.	69	G	107298487	A	G	107298487	3	3	82	1	0	0	0	0	1	0	0	0	10935	101	4	2	439	2	OR13C3	9	107298487	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	10215973	107298487	33914944	218	10980											
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113509954	113509954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUSK	NM_001166280	exon8	c.G817A	p.D273N	GTGAAAGACCGAG	.	126	32	116	0	.	1379	A	113509954	G	A	113509954	3	1	82	1	0	0	0	0	1	0	0	0	9989	942	33	3	847	3	MUSK	9	113509954	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	6211467	113509954	27703477	219	10981											
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114348379	114348379	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PTGR1	NM_001146108	exon5	c.A276T	p.T92T	GTGCGTTGTCCAG	.	219	41	264	0	.	90	A	114348379	T	A	114348379	2	1	82	1	0	0	0	0	0	0	0	1	12753	1799	63	4		4	PTGR1	9	114348379	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	838425	114348379	26865052	220	10982											
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116973290	116973290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL27A1	NM_032888	exon12	c.G2351A	p.G784D	AGAGGGGCAAGAT	.	96	14	141	0	.	94	A	116973290	G	A	116973290	3	1	82	1	0	0	0	0	1	0	0	0	3685	1203	42	3	2397	3	COL27A1	9	116973290	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2624911	116973290	24240141	221	10983											
FBXW2	26190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123526906	123526906	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FBXW2	NM_012164	exon8	c.G1296A	p.T432T	CAAGCCCGTGTCA	.	201	39	202	0	.	227	T	123526906	C	T	123526906	2	4	82	1	0	0	0	0	0	0	0	1	5766	639	23	1		1	FBXW2	9	123526906	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	6553616	123526906	17686525	222	10984											
NR6A1	2649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	127284984	127284984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NR6A1	NM_033334	exon10	c.A1443G	p.X481W	AACAGGTCATTCC	.	33	4	42	0	.	189	C	127284984	T	C	127284984	3	2	82	1	0	0	0	0	1	0	0	0	10637	1680	58	2	3	2	NR6A1	9	127284984	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	3758078	127284984	13928447	223	10985											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	132632035	132632035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	USP20	NM_001008563	exon14	c.T1477C	p.Y493H	GCCATCTACCAGA	.	176	8	260	0	.	658	C	132632035	T	C	132632035	3	2	82	1	0	0	0	0	1	0	0	0	17049	1522	53	2	1523	2	USP20	9	132632035	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5347051	132632035	8581396	224	10986											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	134038560	134038560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NUP214	NM_005085	exon19	c.G2723A	p.S908N	TTCACAGGTGTGG	.	95	17	103	0	.	1131	A	134038560	G	A	134038560	3	1	82	1	0	0	0	0	1	0	0	0	10762	1014	35	3	2797	3	NUP214	9	134038560	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1406525	134038560	7174871	225	10987											
SURF4	6836	broad.mit.edu;bcgsc.ca	37	9	136230392	136230396	+	Frame_Shift_Del	DEL	CCATG	CCATG	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	CCATG	CCATG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SURF4	NM_033161	exon6	c.783_787del	p.261_263del	TCTCATCCATGGA	.	96	9	123	0	.	90	-	136230396	CCATG	-	136230392	7	5	82	1	0	1	0	1	0	0	0	0	15402	855	30	0	26	0	SURF4	9	136230392	Frame_Shift_Del	DEL	CCATG	TCGA-DD-A3A9-01A-11D-A25V-10	2191832	136230392	4983039	226	10988											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139361447	139361447	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_014866	exon6	c.T3891C	p.Y1297Y	TGCGTCATACTCT	.	62	14	48	0	.	.	G	139361447	A	G	139361447	2	3	82	1	0	0	0	0	0	0	0	1	13986	224	8	2		2	SEC16A	9	139361447	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3131055	139361447	1851984	227	10989											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140880973	140880973	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CACNA1B	NM_001243812	exon14	c.1878delG	p.L626fs	CCTGCTGGGGATG	.	186	62	166	0	.	138	-	140880973	G	-	140880973	7	5	82	1	0	1	0	1	0	0	0	0	2539	1335	47	0	1932	0	CACNA1B	9	140880973	Frame_Shift_Del	DEL	G	TCGA-DD-A3A9-01A-11D-A25V-10	1519526	140880973	332458	228	10990											
ITIH5	80760	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7684011	7684011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ITIH5	NM_001001851	exon3	c.A178T	p.I60F	AAATGATGGTAGA	.	282	45	207	1	.	92	A	7684011	T	A	7684011	3	1	82	1	0	0	0	0	1	0	0	0	7907	1464	51	4	2835	4	ITIH5	10	7684011	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		7684011	127850736	229	10991											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16967302	16967302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CUBN	NM_001081	exon43	c.T6584A	p.F2195Y	GAAATAAACTGAA	.	298	48	260	0	.	166	T	16967302	A	T	16967302	3	4	82	1	0	0	0	0	1	0	0	0	4051	14	1	4	4387	4	CUBN	10	16967302	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	9283291	16967302	118567445	230	10992											
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25887663	25887663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPR158	NM_020752	exon11	c.G3108T	p.M1036I	TGAAATGGAGAAA	.	110	31	88	0	.	141	T	25887663	G	T	25887663	3	4	82	1	0	0	0	0	1	0	0	0	6663	1348	47	3	3150	3	GPR158	10	25887663	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	8920361	25887663	109647084	231	10993											
ACBD5	91452	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	27486370	27486370	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ACBD5	NM_145698	exon13	c.A1567T	p.K523X	TCAGTTTTCTTTA	.	263	105	178	1	.	90	A	27486370	T	A	27486370	4	1	82	1	0	0	0	0	0	1	0	0	125	1855	64	4	14	4	ACBD5	10	27486370	Nonsense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1598707	27486370	108048377	232	10994											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37507997	37507997	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ANKRD30A	NM_052997	exon34	c.C3189T	p.A1063A	AATAGCCACACTG	.	203	65	174	0	.	161	T	37507997	C	T	37507997	2	4	82	1	0	0	0	0	0	0	0	1	658	581	21	3		3	ANKRD30A	10	37507997	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	10021627	37507997	98026750	233	10995											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55600110	55600110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDH15	NM_001142763	exon30	c.A3968G	p.N1323S	GCTCTGTTGGTTT	.	186	30	142	0	.	193	C	55600110	T	C	55600110	3	2	82	1	0	0	0	0	1	0	0	0	11511	1725	60	2	3553	2	PCDH15	10	55600110	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	18092113	55600110	79934637	234	10996											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	85972935	85972935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CDHR1	NM_001171971	exon16	c.1871delC	p.S624fs	TCAATTCCCACAC	.	164	54	155	0	.	91	-	85972935	C	-	85972935	7	5	82	1	0	1	0	1	0	0	0	0	3118	855	30	0	1933	0	CDHR1	10	85972935	Frame_Shift_Del	DEL	C	TCGA-DD-A3A9-01A-11D-A25V-10	30372825	85972935	49561812	235	10997											
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88419162	88419162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OPN4	NM_001030015	exon6	c.T770C	p.L257P	TCTTCCTCCCTCT	.	148	26	101	0	.	69	C	88419162	T	C	88419162	3	2	82	1	0	0	0	0	1	0	0	0	10882	1551	54	2	792	2	OPN4	10	88419162	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	2446227	88419162	47115585	236	10998											
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88649933	88649933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BMPR1A	NM_004329	exon4	c.G182A	p.C61Y	TAAAGTGCTATTG	.	275	34	243	0	.	1619	A	88649933	G	A	88649933	3	1	82	1	0	0	0	0	1	0	0	0	1469	1319	46	3	188	3	BMPR1A	10	88649933	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	230771	88649933	46884814	237	10999											
IFIT2	3433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	91066441	91066441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IFIT2	NM_001547	exon2	c.C728T	p.A243V	AGAAAGCCCCAGG	.	137	12	129	0	.	92	T	91066441	C	T	91066441	3	4	82	1	0	0	0	0	1	0	0	0	7523	739	26	3	734	3	IFIT2	10	91066441	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2416508	91066441	44468306	238	11000											
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	95791760	95791760	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLCE1	NM_016341	exon2	c.G957A	p.K319K	CAAAAAGGAGCGA	.	134	13	110	0	.	229	A	95791760	G	A	95791760	2	1	82	1	0	0	0	0	0	0	0	1	12034	991	35	3		3	PLCE1	10	95791760	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4725319	95791760	39742987	239	11001											
ENTPD1	953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97626020	97626020	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ENTPD1	NM_001164178	exon10	c.T1449C	p.P483P	CACACCTCTCTCC	.	672	87	536	2	.	93	C	97626020	T	C	97626020	2	2	82	1	0	0	0	0	0	0	0	1	5138	1538	54	2		2	ENTPD1	10	97626020	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1834260	97626020	37908727	240	11002											
SLIT1	6585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98764566	98764566	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLIT1	NM_003061	exon33	c.G3594A	p.E1198E	ATTGTCCTCTGCC	.	330	60	268	1	.	94	T	98764566	C	T	98764566	2	4	82	1	0	0	0	0	0	0	0	1	14739	680	24	3		3	SLIT1	10	98764566	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1138546	98764566	36770181	241	11003											
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105763103	105763103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLK	NM_014720	exon9	c.A2167G	p.K723E	GAAAATAAAGAAG	.	40	12	40	0	.	549	G	105763103	A	G	105763103	3	3	82	1	0	0	0	0	1	0	0	0	14748	363	13	2	2201	2	SLK	10	105763103	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	6998537	105763103	29771644	242	11004											
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127434413	127434413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C10orf137	NM_001202438	exon19	c.A2728G	p.M910V	AGGCTCATGCGGA	.	166	50	128	0	.	590	G	127434413	A	G	127434413	3	3	82	1	0	0	0	0	1	0	0	0	1594	217	8	2	2696	2	C10orf137	10	127434413	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	21671310	127434413	8100334	243	11005											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135038187	135038187	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KNDC1	NM_152643	exon30	c.G5043A	p.Q1681Q	GAGCCAGGTGCAC	.	307	37	207	0	.	229	A	135038187	G	A	135038187	2	1	82	1	0	0	0	0	0	0	0	1	8426	991	35	3		3	KNDC1	10	135038187	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	7603774	135038187	496560	244	11006											
ECHS1	1892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135179489	135179489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ECHS1	NM_004092	exon6	c.G730C	p.V244L	CATTCACTGATTC	.	100	18	101	0	.	90	G	135179489	C	G	135179489	3	3	82	1	0	0	0	0	1	0	0	0	4896	565	20	4	154	4	ECHS1	10	135179489	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	141302	135179489	355258	245	11007											
ODF3	113746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	198506	198506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ODF3	NM_053280	exon5	c.C455A	p.T152N	CCAATACCGTCGG	.	159	23	171	0	.	493	A	198506	C	A	198506	3	1	82	1	0	0	0	0	1	0	0	0	10829	507	18	3	469	3	ODF3	11	198506	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		198506	134808010	246	11008											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	611702	611702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PHRF1	NM_020901	exon18	c.C4872A	p.D1624E	CGTGGACAAGTAC	.	81	9	66	0	.	22	A	611702	C	A	611702	3	1	82	1	0	0	0	0	1	0	0	0	11861	477	17	3	4938	3	PHRF1	11	611702	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	413196	611702	134394814	247	11009											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1081136	1081136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUC2	NM_002457	exon11	c.G1432A	p.V478M	CCCCACGTGACCG	.	143	27	96	0	.	90	A	1081136	G	A	1081136	3	1	82	1	0	0	0	0	1	0	0	0	9975	1145	40	1	1474	1	MUC2	11	1081136	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	469434	1081136	133925380	248	11010											
KRTAP5-3	387266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1629511	1629511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KRTAP5-3	NM_001012708	exon1	c.C105T	p.C35C	TACACAGCAGCCG	.	42	10	49	0	.	92	A	1629511	G	A	1629511	2	1	82	1	0	0	0	0	0	0	0	1	8562	963	34	3		3	KRTAP5-3	11	1629511	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	548375	1629511	133377005	249	11011											
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1955022	1955023	+	Silent	DNP	CC	CC	AA	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	.	.	.	p.E92E	TGAAGCCCGGAAG	.	218	26	178	0	.	.	AA	1955023	CC	AA	1955022	2	1	82	1	0	0	0	0	0	0	0	1	16329	610	22	3		3	TNNT3	11	1955022	Silent	DNP	CC	TCGA-DD-A3A9-01A-11D-A25V-10	325511	1955022	133051494	250	11012											
INS-IGF2	723961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2170519	2170519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	INS-IGF2	NM_001042376	exon3	c.A244T	p.T82S	TGGCTGTGGCGTC	.	62	11	60	0	.	22	A	2170519	T	A	2170519	3	1	82	1	0	0	0	0	1	0	0	0	7763	1696	59	4	366	4	INS-IGF2	11	2170519	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	215497	2170519	132835997	251	11013											
TSSC4	10078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2424378	2424378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TSSC4	NM_005706	exon2	c.A515C	p.E172A	TGACCGAGGTCAG	.	90	9	99	0	.	90	C	2424378	A	C	2424378	3	2	82	1	0	0	0	0	1	0	0	0	16664	304	11	5	517	5	TSSC4	11	2424378	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	253859	2424378	132582138	252	11014											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6579426	6579426	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNHD1	NM_144666	exon25	c.T8901C	p.P2967P	TTTCCCTGGCCAG	.	137	69	147	0	.	24	C	6579426	T	C	6579426	2	2	82	1	0	0	0	0	0	0	0	1	4668	1567	55	2		2	DNHD1	11	6579426	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	4155048	6579426	128427090	253	11015											
OR10A5	144124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6867579	6867579	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR10A5	NM_178168	exon1	c.T666C	p.I222I	TCGCATTGCTGCT	.	452	54	445	0	.	71	C	6867579	T	C	6867579	2	2	82	1	0	0	0	0	0	0	0	1	10893	1800	63	2		2	OR10A5	11	6867579	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	288153	6867579	128138937	254	11016											
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7334640	7334640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYT9	NM_175733	exon3	c.G512A	p.R171Q	CAATCCGAAGACA	.	126	25	95	0	.	155	A	7334640	G	A	7334640	3	1	82	1	0	0	0	0	1	0	0	0	15478	1058	37	1	522	1	SYT9	11	7334640	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	467061	7334640	127671876	255	11017											
ABCC8	6833	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17449458	17449458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ABCC8	NM_000352	exon15	c.A2072T	p.D691V	ATTCCATCTGGGG	.	148	19	144	1	.	91	A	17449458	T	A	17449458	3	1	82	1	0	0	0	0	1	0	0	0	58	1435	50	4	2773	4	ABCC8	11	17449458	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	10114818	17449458	117557058	256	11018											
CCDC34	91057	broad.mit.edu;mdanderson.org	37	11	27384586	27384586	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC34	NM_030771	exon1	c.G156T	p.S52S	CGGCGGCGACGGC	.	55	8	54	0	.	90	A	27384586	C	A	27384586	2	1	82	1	0	0	0	0	0	0	0	1	2807	755	27	1		1	CCDC34	11	27384586	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	9935128	27384586	107621930	257	11019											
COMMD9	29099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36296268	36296268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COMMD9	NM_014186	exon6	c.G511A	p.V171M	GCTCCACGGTGAC	.	345	173	248	0	.	91	T	36296268	C	T	36296268	3	4	82	1	0	0	0	0	1	0	0	0	3723	536	19	1	89	1	COMMD9	11	36296268	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	8911682	36296268	98710248	258	11020											
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	36596385	36596385	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAG1	NM_000448	exon2	c.A1531T	p.K511X	GCTGAGAAGGTAC	.	205	41	152	0	.	230	T	36596385	A	T	36596385	4	4	82	1	0	0	0	0	0	1	0	0	13003	247	9	4	1533	4	RAG1	11	36596385	Nonsense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	300117	36596385	98410131	259	11021											
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	36614459	36614459	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAG2	NM_001243785	exon3	c.C1260A	p.C420X	AGTAGGGCAGCAT	.	104	14	113	0	.	95	T	36614459	G	T	36614459	4	4	82	1	0	0	0	0	0	1	0	0	13005	1195	42	3	327	3	RAG2	11	36614459	Nonsense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	18074	36614459	98392057	260	11022											
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47315515	47315515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MADD	NM_130475	exon22	c.G3497A	p.S1166N	GTGTGAGCCTGAC	.	132	32	128	0	.	682	A	47315515	G	A	47315515	3	1	82	1	0	0	0	0	1	0	0	0	9152	971	34	3	3579	3	MADD	11	47315515	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	10701056	47315515	87691001	261	11023											
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47376978	47376978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPI1	NM_001080547	exon5	c.C616G	p.H206D	CCTTGTGCTTGGA	.	109	19	117	0	.	226	C	47376978	G	C	47376978	3	2	82	1	0	0	0	0	1	0	0	0	15048	1319	46	4	203	4	SPI1	11	47376978	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	61463	47376978	87629538	262	11024											
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51412084	51412084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR4A5	NM_001005272	exon1	c.C312T	p.F104F	ACCAAAGAAATGG	.	250	36	276	0	.	92	A	51412084	G	A	51412084	2	1	82	1	0	0	0	0	0	0	0	1	11043	933	33	3		3	OR4A5	11	51412084	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4035106	51412084	83594432	263	11025											
OR5D18	219438	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55587463	55587463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR5D18	NM_001001952	exon1	c.G358A	p.A120T	GTGATGGCCTATG	.	338	70	288	1	.	71	A	55587463	G	A	55587463	3	1	82	1	0	0	0	0	1	0	0	0	11157	1203	42	3	360	3	OR5D18	11	55587463	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4175379	55587463	79419053	264	11026											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62290481	62290481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AHNAK	NM_001620	exon5	c.A11408G	p.K3803R	GGCATCTTCAGGT	.	209	41	140	0	.	109	C	62290481	T	C	62290481	3	2	82	1	0	0	0	0	1	0	0	0	414	1609	56	2	6384	2	AHNAK	11	62290481	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	6703018	62290481	72716035	265	11027											
PLCB3	5331	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	64030000	64030000	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLCB3	NM_000932	exon18	c.G2160A	p.V720V	CATCGTGGATGGC	.	42	5	53	1	.	228	A	64030000	G	A	64030000	2	1	82	1	0	0	0	0	0	0	0	1	12029	1335	47	3		3	PLCB3	11	64030000	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1739519	64030000	70976516	266	11028											
MAP3K11	4296	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	65365896	65365896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAP3K11	NM_002419	exon10	c.A2410G	p.T804A	ACAAGGTCCAGGG	.	42	5	36	0	.	980	C	65365896	T	C	65365896	3	2	82	1	0	0	0	0	1	0	0	0	9245	1667	58	2	137	2	MAP3K11	11	65365896	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1335896	65365896	69640620	267	11029											
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66392861	66392861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	RBM14,brain,glioma,-1	RBM14	NM_006328	exon2	c.G1514A	p.G505E	CCTACGGGGCCCA	.	69	11	59	0	.	92	A	66392861	G	A	66392861	3	1	82	1	0	0	0	0	1	0	0	0	13115	1232	43	3	1520	3	RBM14	11	66392861	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1026965	66392861	68613655	268	11030											
FOLR1	2348	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71903312	71903312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FOLR1	NM_016729	exon1	c.A95C	p.E32A	GGACTGAGCTTCT	.	224	29	217	1	.	91	C	71903312	A	C	71903312	3	2	82	1	0	0	0	0	1	0	0	0	5981	304	11	5	97	5	FOLR1	11	71903312	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	5510451	71903312	63103204	269	11031											
DLG2	1740	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	84634119	84634119	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DLG2	NM_001364	exon2	c.42+2T>A	.	CCTCTTACCTTCA	.	144	19	135	2	.	96	T	84634119	A	T	84634119	5	4	82	1	0	0	0	0	0	0	1	0	4555	405	14	4	2819	4	DLG2	11	84634119	Splice_Site	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	12730807	84634119	50372397	270	11032											
TMEM135	65084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86782616	86782616	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TMEM135	NM_022918	exon3	c.G321A	p.L107L	CGCTCTGCCAGCA	.	62	7	73	0	.	514	A	86782616	G	A	86782616	2	1	82	1	0	0	0	0	0	0	0	1	16048	1306	46	3		3	TMEM135	11	86782616	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2148497	86782616	48223900	271	11033											
NAALAD2	10003	broad.mit.edu;ucsc.edu	37	11	89896533	89896533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NAALAD2	NM_005467	exon10	c.C1131G	p.D377E	TATTGACCCAACC	.	74	10	67	1	.	92	G	89896533	C	G	89896533	3	3	82	1	0	0	0	0	1	0	0	0	10128	506	18	4	1169	4	NAALAD2	11	89896533	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3113917	89896533	45109983	272	11034											
MMP1	4312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102662135	102662135	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MMP1	NM_002421	exon8	c.G1125A	p.K375K	GATATGCTTCACA	.	149	23	135	0	.	229	T	102662135	C	T	102662135	2	4	82	1	0	0	0	0	0	0	0	1	9648	796	28	3		3	MMP1	11	102662135	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	12765602	102662135	32344381	273	11035											
ALG9	79796	hgsc.bcm.edu;mdanderson.org	37	11	111740961	111740961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ALG9	NM_001077690	exon3	c.G264A	p.W88X	TGGCTCCCAGTAG	.	113	20	97	0	.	91	T	111740961	C	T	111740961	4	4	82	1	0	0	0	0	0	1	0	0	524	624	22	3	1648	3	ALG9	11	111740961	Nonsense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	9078826	111740961	23265555	274	11036											
UBE4A	9354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118263565	118263565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	UBE4A	NM_004788	exon19	c.C3050T	p.S1017F	CATCTTCCAGAGT	.	128	74	146	1	.	229	T	118263565	C	T	118263565	3	4	82	1	0	0	0	0	1	0	0	0	16879	855	30	3	3120	3	UBE4A	11	118263565	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	6522604	118263565	16742951	275	11037											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118374789	118374789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MLL	NM_001197104	exon27	c.G8182A	p.E2728K	GGGACAGAGAGTG	.	127	26	109	0	.	1255	A	118374789	G	A	118374789	3	1	82	1	0	0	0	0	1	0	0	0	9620	943	33	3	8279	3	MLL	11	118374789	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	111224	118374789	16631727	276	11038											
BLID	414899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121986461	121986461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001001786	exon1	c.C170A	p.P57H	AACATAGGTTCTT	.	183	29	162	0	.	.	T	121986461	G	T	121986461	3	4	82	1	0	0	0	0	1	0	0	0	1443	1000	35	3	160	3	BLID	11	121986461	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3611672	121986461	13020055	277	11039											
UBASH3B	84959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122659819	122659819	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	UBASH3B	NM_032873	exon6	c.C783T	p.V261V	ACAGGTCATCTAC	.	130	56	145	1	.	68	T	122659819	C	T	122659819	2	4	82	1	0	0	0	0	0	0	0	1	16837	813	29	3		3	UBASH3B	11	122659819	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	673358	122659819	12346697	278	11040											
VWA5A	4013	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124016605	124016605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VWA5A	NM_014622	exon18	c.A2314T	p.I772F	GCTGCTATTACTT	.	193	28	177	1	.	92	T	124016605	A	T	124016605	3	4	82	1	0	0	0	0	1	0	0	0	17239	449	16	4	2384	4	VWA5A	11	124016605	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1356786	124016605	10989911	279	11041											
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132306092	132306092	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OPCML	NM_002545	exon6	c.A825G	p.K275K	GCGGCCTTTGTTT	.	146	21	125	0	.	93	C	132306092	T	C	132306092	2	2	82	1	0	0	0	0	0	0	0	1	10874	1606	56	2		2	OPCML	11	132306092	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	8289487	132306092	2700424	280	11042											
IQSEC3	440073	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	266236	266236	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IQSEC3	NM_001170738	exon6	c.G2199A	p.E733E	GGACGAGGCCCTG	.	215	60	193	1	.	560	A	266236	G	A	266236	2	1	82	1	0	0	0	0	0	0	0	1	7819	991	35	3		3	IQSEC3	12	266236	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10		266236	133585659	281	11043											
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7242776	7242776	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	.	.	.	.	CTTTCCCGGGGGG	.	99	18	94	0	.	.	G	7242776	C	G	7242776	2	3	82	1	0	0	0	0	0	0	0	1	1972	639	23	4		4	C1R	12	7242776	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	6976540	7242776	126609119	282	11044											
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9258835	9258835	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	A2M,brain,glioma,-2	A2M	NM_000014	exon10	c.G1101A	p.G367G	CACCTGCCCAAAG	.	107	12	82	0	.	515	T	9258835	C	T	9258835	2	4	82	1	0	0	0	0	0	0	0	1	4	726	26	3		3	A2M	12	9258835	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2016059	9258835	124593060	283	11045											
PLBD1	79887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14706133	14706133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLBD1	NM_024829	exon2	c.C329G	p.T110S	GGGGCAGTGAGGT	.	137	13	100	0	.	90	C	14706133	G	C	14706133	3	2	82	1	0	0	0	0	1	0	0	0	12025	1029	36	4	1372	4	PLBD1	12	14706133	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5447298	14706133	119145762	284	11046											
PTPRO	5800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15652426	15652426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PTPRO	NM_002848	exon4	c.T559A	p.Y187N	ATGTGTTATAGTA	.	172	39	152	1	.	271	A	15652426	T	A	15652426	3	1	82	1	0	0	0	0	1	0	0	0	12809	1754	61	4	573	4	PTPRO	12	15652426	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	946293	15652426	118199469	285	11047											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu	37	12	18552717	18552717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PIK3C2G	NM_004570	exon15	c.C2128T	p.H710Y	GAAATGCATACCA	.	84	4	100	0	.	1312	T	18552717	C	T	18552717	3	4	82	1	0	0	0	0	1	0	0	0	11911	710	25	3	2182	3	PIK3C2G	12	18552717	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2900291	18552717	115299178	286	11048											
BICD1	636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	32260378	32260378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BICD1	NM_001714	exon1	c.G113A	p.G38E	AGTACGGGCTGGT	.	125	11	139	0	.	153	A	32260378	G	A	32260378	3	1	82	1	0	0	0	0	1	0	0	0	1428	1232	43	3	115	3	BICD1	12	32260378	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	13707661	32260378	101591517	287	11049											
TUBA1A	7846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49578875	49578875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TUBA1A	NM_001270399	exon4	c.T1274C	p.M425T	GCAGCCATGTCCT	.	336	90	348	0	.	90	G	49578875	A	G	49578875	3	3	82	1	0	0	0	0	1	0	0	0	16740	217	8	2	85	2	TUBA1A	12	49578875	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	17318497	49578875	84273020	288	11050											
HELB	92797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	66704296	66704296	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HELB	NM_033647	exon4	c.A1588T	p.K530X	GCGGACAAGGCTA	.	144	18	101	0	.	515	T	66704296	A	T	66704296	4	4	82	1	0	0	0	0	0	1	0	0	7045	131	5	4	1602	4	HELB	12	66704296	Nonsense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	17125421	66704296	67147599	289	11051											
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72936136	72936136	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TRHDE	NM_013381	exon7	c.A1653G	p.Q551Q	TTTGCAAGTAAGT	.	35	9	26	0	.	93	G	72936136	A	G	72936136	2	3	82	1	0	0	0	0	0	0	0	1	16476	86	3	2		2	TRHDE	12	72936136	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	6231840	72936136	60915759	290	11052											
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	95422248	95422248	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NR2C1	NM_003297	exon12	c.A1446G	p.L482L	CTCCTGTAGTTTG	.	64	6	63	0	.	187	C	95422248	T	C	95422248	2	2	82	1	0	0	0	0	0	0	0	1	10622	1625	57	2		2	NR2C1	12	95422248	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	22486112	95422248	38429647	291	11053											
CMKLR1	1240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	108686719	108686719	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CMKLR1	NM_001142344	exon3	c.T21A	p.D7E	GTTGTAATCTTCA	.	119	6	136	0	.	523	T	108686719	A	T	108686719	3	4	82	1	0	0	0	0	1	0	0	0	3579	98	4	4	1104	4	CMKLR1	12	108686719	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	13264471	108686719	25165176	292	11054											
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110230527	110230527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TRPV4	NM_021625	exon11	c.G1754T	p.G585V	ATCCAGCCCAGGA	.	155	17	123	0	.	94	A	110230527	C	A	110230527	3	1	82	1	0	0	0	0	1	0	0	0	16595	739	26	3	885	3	TRPV4	12	110230527	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1543808	110230527	23621368	293	11055											
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	114296692	114296692	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RBM19	NM_001146699	exon22	c.G2568A	p.G856G	CAACTCCCCAAAG	.	88	31	99	0	.	95	T	114296692	C	T	114296692	2	4	82	1	0	0	0	0	0	0	0	1	13121	610	22	3		3	RBM19	12	114296692	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4066165	114296692	19555203	294	11056											
HIP1R	9026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123338690	123338690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HIP1R	NM_003959	exon8	c.C678T	p.L226L	CCACCTCTACCAC	.	61	5	88	0	.	91	T	123338690	C	T	123338690	2	4	82	1	0	0	0	0	0	0	0	1	7115	900	32	3		3	HIP1R	12	123338690	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	9041998	123338690	10513205	295	11057											
TMEM132D	121256	ucsc.edu;bcgsc.ca	37	12	129559205	129559205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TMEM132D	NM_133448	exon9	c.G2515A	p.G839R	ACTGTCCTTCCTG	.	327	109	342	2	.	106	T	129559205	C	T	129559205	3	4	82	1	0	0	0	0	1	0	0	0	16044	690	24	3	788	3	TMEM132D	12	129559205	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	6220515	129559205	4292690	296	11058											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	129559407	129559407	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TMEM132D	NM_133448	exon9	c.G2313C	p.M771I	AATAACCATTTCC	.	269	14	251	0	.	106	G	129559407	C	G	129559407	3	3	82	1	0	0	0	0	1	0	0	0	16044	594	21	4	990	4	TMEM132D	12	129559407	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	202	129559407	4292488	297	11059											
TUBA3C	7278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	19753559	19753559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TUBA3C	NM_006001	exon2	c.A148G	p.N50D	ACGTGTTGAAGGA	.	292	75	368	1	.	95	C	19753559	T	C	19753559	3	2	82	1	0	0	0	0	1	0	0	0	16743	1812	63	2	1220	2	TUBA3C	13	19753559	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		19753559	95416319	298	11060											
RNF17	56163	broad.mit.edu;mdanderson.org	37	13	25448375	25448375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RNF17	NM_031277	exon33	c.T4571A	p.L1524Q	CAAAGCTGACATT	.	26	4	37	0	.	228	A	25448375	T	A	25448375	3	1	82	1	0	0	0	0	1	0	0	0	13461	1580	55	4	4701	4	RNF17	13	25448375	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	5694816	25448375	89721503	299	11061											
KLF12	11278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	74387348	74387348	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KLF12	NM_007249	exon5	c.C747A	p.T249T	ATCTAAGGTCACA	.	170	38	222	0	.	91	T	74387348	G	T	74387348	2	4	82	1	0	0	0	0	0	0	0	1	8340	987	35	3		3	KLF12	13	74387348	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	48938973	74387348	40782530	300	11062											
ACTR10	55860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58690343	58690343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ACTR10	NM_018477	exon9	c.G638A	p.R213H	AAGCGCGTACTTG	.	65	20	65	0	.	90	A	58690343	G	A	58690343	3	1	82	1	0	0	0	0	1	0	0	0	208	1145	40	1	672	1	ACTR10	14	58690343	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10		58690343	48659197	301	11063											
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60074189	60074189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RTN1	NM_021136	exon4	c.G1787A	p.R596Q	ATGTCCCGCCAAT	.	134	23	190	0	.	516	T	60074189	C	T	60074189	3	4	82	1	0	0	0	0	1	0	0	0	13725	652	23	1	567	1	RTN1	14	60074189	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1383846	60074189	47275351	302	11064											
MAP3K9	4293	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71206814	71206814	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAP3K9	NM_033141	exon7	c.C1635G	p.S545R	GGAGCGGCTGTTG	.	307	51	343	1	.	546	C	71206814	G	C	71206814	3	2	82	1	0	0	0	0	1	0	0	0	9257	1194	42	4	1749	4	MAP3K9	14	71206814	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	11132625	71206814	36142726	303	11065											
ISM2	145501	broad.mit.edu;mdanderson.org	37	14	77948666	77948666	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ISM2	NM_199296	exon4	c.C972T	p.Y324Y	CTCACCGTAGCTG	.	76	8	90	0	.	91	A	77948666	G	A	77948666	2	1	82	1	0	0	0	0	0	0	0	1	7861	1159	40	1		1	ISM2	14	77948666	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	6741852	77948666	29400874	304	11066											
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81955626	81955626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEL1L	NM_005065	exon14	c.G1365T	p.M455I	GTAGGCCATTCCA	.	182	25	160	0	.	227	A	81955626	C	A	81955626	3	1	82	1	0	0	0	0	1	0	0	0	14010	594	21	3	1051	3	SEL1L	14	81955626	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4006960	81955626	25393914	305	11067											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89202777	89202777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EML5	NM_183387	exon7	c.A980T	p.E327V	CAAAGTTCACCTT	.	185	38	185	0	.	93	A	89202777	T	A	89202777	3	1	82	1	0	0	0	0	1	0	0	0	5100	1783	62	4	5101	4	EML5	14	89202777	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	7247151	89202777	18146763	306	11068											
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90651207	90651207	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNK13	NM_022054	exon2	c.C1087T	p.L363L	GCCATCCTGCAGA	.	163	26	169	0	.	91	T	90651207	C	T	90651207	2	4	82	1	0	0	0	0	0	0	0	1	8061	680	24	3		3	KCNK13	14	90651207	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1448430	90651207	16698333	307	11069											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101350875	101350875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RTL1	NM_001134888	exon1	c.C251T	p.P84L	TTACGTGGGCCAC	.	103	16	119	0	.	46	A	101350875	G	A	101350875	3	1	82	1	0	0	0	0	1	0	0	0	13724	1348	47	3	3829	3	RTL1	14	101350875	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	10699668	101350875	5998665	308	11070											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414859	105414859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AHNAK2	NM_138420	exon7	c.A6929G	p.D2310G	GTCACGTCCTTGT	.	122	28	159	0	.	47	C	105414859	T	C	105414859	3	2	82	1	0	0	0	0	1	0	0	0	415	1667	58	2	10462	2	AHNAK2	14	105414859	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	4063984	105414859	1934681	309	11071											
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26793135	26793135	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRB3	NM_021912	exon9	c.A1227G	p.R409R	CCCTTCTCGAGGC	.	174	37	167	0	.	518	C	26793135	T	C	26793135	2	2	82	1	0	0	0	0	0	0	0	1	6168	1538	54	2		2	GABRB3	15	26793135	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		26793135	75738257	310	11072											
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28443786	28443787	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	.	.	.	p.G2616C	AGGTGCCCCCTTT	.	404	76	438	2	.	.	AA	28443787	CC	AA	28443786	3	1	82	1	0	0	0	0	1	0	0	0	7058	623	22	3	6838	3	HERC2	15	28443786	Missense_Mutation	DNP	CC	TCGA-DD-A3A9-01A-11D-A25V-10	1650651	28443786	74087606	311	11073											
CHRM5	1133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34356472	34356472	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CHRM5	NM_012125	exon3	c.A1554G	p.K518K	GAAAAAAGTGGAA	.	103	11	99	0	.	91	G	34356472	A	G	34356472	2	3	82	1	0	0	0	0	0	0	0	1	3380	69	3	2		2	CHRM5	15	34356472	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	5912686	34356472	68174920	312	11074											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40920293	40920293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CASC5	NM_170589	exon12	c.A5480G	p.D1827G	AAGAGGATATAGA	.	89	17	113	0	.	660	G	40920293	A	G	40920293	3	3	82	1	0	0	0	0	1	0	0	0	2663	333	12	2	5522	2	CASC5	15	40920293	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	6563821	40920293	61611099	313	11075											
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41137074	41137074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPINT1	NM_181642	exon2	c.C322T	p.R108C	CCCGACCGCGGGG	.	70	9	80	0	.	91	T	41137074	C	T	41137074	3	4	82	1	0	0	0	0	1	0	0	0	15067	652	23	1	324	1	SPINT1	15	41137074	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	216781	41137074	61394318	314	11076											
INO80	54617	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41337196	41337196	+	Missense_Mutation	SNP	T	T	A	rs115089447	byfrequency;alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	INO80	NM_017553	exon24	c.A2813T	p.E938V	TGGCTCTCCCCTT	.	66	14	63	0	T|0.989;C|0.011	72	A	41337196	T	A	41337196	3	1	82	1	0	0	0	0	1	0	0	0	7746	1551	54	4	1909	4	INO80	15	41337196	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	200122	41337196	61194196	315	11077											
SORD	6652	broad.mit.edu;bcgsc.ca	37	15	45332630	45332630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SORD	NM_003104	exon2	c.G91A	p.G31S	GAACCAGGCCCAA	.	498	58	497	2	.	90	A	45332630	G	A	45332630	3	1	82	1	0	0	0	0	1	0	0	0	14933	1000	35	3	97	3	SORD	15	45332630	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3995434	45332630	57198762	316	11078											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	48719788	48719788	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FBN1	NM_000138	exon58	c.C7180T	p.R2394X	ATCCTCGGCCATG	.	137	12	124	0	.	92	A	48719788	G	A	48719788	4	1	82	1	0	0	0	0	0	1	0	0	5702	1124	39	1	1471	1	FBN1	15	48719788	Nonsense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3387158	48719788	53811604	317	11079											
DYX1C1	161582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	55783381	55783381	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DYX1C1	NM_001033560	exon4	c.A345T	p.T115T	TGCTTCTGTAGCT	.	236	39	201	1	.	91	A	55783381	T	A	55783381	2	1	82	1	0	0	0	0	0	0	0	1	4862	1567	55	4		4	DYX1C1	15	55783381	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	7063593	55783381	46748011	318	11080											
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56394441	56394441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RFX7	NM_022841	exon6	c.A529G	p.S177G	GTCCACTGTAGCA	.	47	10	54	0	.	90	C	56394441	T	C	56394441	3	2	82	1	0	0	0	0	1	0	0	0	13268	1580	55	2	3869	2	RFX7	15	56394441	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	611060	56394441	46136951	319	11081											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62219327	62219327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VPS13C	NM_020821	exon52	c.C6479T	p.P2160L	AGAAAAGGGCAAG	.	117	17	142	0	.	92	A	62219327	G	A	62219327	3	1	82	1	0	0	0	0	1	0	0	0	17188	1000	35	3	4946	3	VPS13C	15	62219327	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5824886	62219327	40312065	320	11082											
DENND4A	10260	broad.mit.edu;mdanderson.org	37	15	65959791	65959791	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DENND4A	NM_001144823	exon29	c.C5234G	p.S1745X	ACCTTTGAATACT	.	68	9	79	0	.	229	C	65959791	G	C	65959791	4	2	82	1	0	0	0	0	0	1	0	0	4433	1294	45	4	506	4	DENND4A	15	65959791	Nonsense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3740464	65959791	36571601	321	11083											
HEXA	3073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	72643535	72643535	+	Missense_Mutation	SNP	T	T	A	rs121907976	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HEXA	NM_000520	exon6	c.A611T	p.H204L	ACCAGATGCCAGT	.	174	24	116	0	.	94	A	72643535	T	A	72643535	3	1	82	1	0	0	0	0	1	0	0	0	7073	1464	51	4	1014	4	HEXA	15	72643535	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	6683744	72643535	29887857	322	11084											
KIF7	374654	broad.mit.edu;mdanderson.org	37	15	90193163	90193163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KIF7	NM_198525	exon3	c.T338C	p.L113P	TCCTCAAGGAGGG	.	38	7	51	1	.	523	G	90193163	A	G	90193163	3	3	82	1	0	0	0	0	1	0	0	0	8309	72	3	2	3761	2	KIF7	15	90193163	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	17549628	90193163	12338229	323	11085											
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	91043276	91043276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IQGAP1	NM_003870	exon38	c.A4910C	p.D1637A	TATTTGATAGAGC	.	69	5	76	0	.	950	C	91043276	A	C	91043276	3	2	82	1	0	0	0	0	1	0	0	0	7814	333	12	5	5060	5	IQGAP1	15	91043276	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	850113	91043276	11488116	324	11086											
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	99451929	99451929	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IGF1R	NM_000875	exon6	c.C1263T	p.Y421Y	CTTCTACGTCCTC	.	190	15	195	0	.	1490	T	99451929	C	T	99451929	2	4	82	1	0	0	0	0	0	0	0	1	7571	547	19	1		1	IGF1R	15	99451929	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	8408653	99451929	3079463	325	11087											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	101592136	101592136	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LRRK1	NM_024652	exon24	c.T3660A	p.P1220P	GGTCCCTGAACTG	.	108	10	134	0	.	602	A	101592136	T	A	101592136	2	1	82	1	0	0	0	0	0	0	0	1	9032	1567	55	4		4	LRRK1	15	101592136	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	2140207	101592136	939256	326	11088											
GRIN2A	2903	ucsc.edu;bcgsc.ca	37	16	9862846	9862846	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRIN2A	NM_000833	exon13	c.C2457T	p.G819G	GAATACGCCCGCC	.	114	12	133	1	.	349	A	9862846	G	A	9862846	2	1	82	1	0	0	0	0	0	0	0	1	6779	1074	38	1		1	GRIN2A	16	9862846	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10		9862846	80491907	327	11089											
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	24202416	24202416	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PRKCB	NM_212535	exon16	c.1728delG	p.M576fs	GCTGATGACCAAA	.	98	29	118	0	.	1530	-	24202416	G	-	24202416	7	5	82	1	0	1	0	1	0	0	0	0	12508	1290	45	0	1790	0	PRKCB	16	24202416	Frame_Shift_Del	DEL	G	TCGA-DD-A3A9-01A-11D-A25V-10	14339570	24202416	66152337	328	11090											
GTF3C1	2975	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27506737	27506737	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GTF3C1	NM_001520	exon15	c.C2427T	p.Y809Y	GATGAGGTACCAC	.	132	28	149	2	.	94	A	27506737	G	A	27506737	2	1	82	1	0	0	0	0	0	0	0	1	6872	1256	44	3		3	GTF3C1	16	27506737	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3304321	27506737	62848016	329	11091											
ITGAX	3687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31390892	31390892	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ITGAX	NM_000887	exon24	c.C2793T	p.H931H	CAGCCACGAACAA	.	118	26	151	1	.	229	T	31390892	C	T	31390892	2	4	82	1	0	0	0	0	0	0	0	1	7889	535	19	1		1	ITGAX	16	31390892	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3884155	31390892	58963861	330	11092											
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56872968	56872968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NUP93	NM_014669	exon19	c.A2123T	p.D708V	ATATTGATAGAGC	.	223	54	201	0	.	205	T	56872968	A	T	56872968	3	4	82	1	0	0	0	0	1	0	0	0	10772	333	12	4	2193	4	NUP93	16	56872968	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	25482076	56872968	33481785	331	11093											
ZNF821	55565	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71913830	71913830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF821	NM_001201556	exon3	c.C20A	p.T7K	GGATTTGTCTGTT	.	168	31	173	2	.	23	T	71913830	G	T	71913830	3	4	82	1	0	0	0	0	1	0	0	0	18175	1377	48	3	1112	3	ZNF821	16	71913830	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	15040862	71913830	18440923	332	11094											
MLKL	197259	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74729411	74729411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MLKL	NM_152649	exon2	c.G245A	p.R82K	TTGGATCTATTGC	.	189	33	235	1	.	561	T	74729411	C	T	74729411	3	4	82	1	0	0	0	0	1	0	0	0	9619	913	32	3	1241	3	MLKL	16	74729411	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2815581	74729411	15625342	333	11095											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76513378	76513378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CNTNAP4	NM_138994	exon11	c.A1606G	p.I536V	TACTATATAGATT	.	171	26	195	0	.	70	G	76513378	A	G	76513378	3	3	82	1	0	0	0	0	1	0	0	0	3649	449	16	2	1884	2	CNTNAP4	16	76513378	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1783967	76513378	13841375	334	11096											
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77398168	77398168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADAMTS18	NM_199355	exon5	c.A889G	p.T297A	CGAGGGTTTCCAC	.	218	51	222	0	.	1036	C	77398168	T	C	77398168	3	2	82	1	0	0	0	0	1	0	0	0	263	1725	60	2	2852	2	ADAMTS18	16	77398168	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	884790	77398168	12956585	335	11097											
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77859180	77859180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VAT1L	NM_020927	exon3	c.C401T	p.A134V	ACAATGCCTGGGC	.	250	43	292	0	.	90	T	77859180	C	T	77859180	3	4	82	1	0	0	0	0	1	0	0	0	17127	739	26	3	411	3	VAT1L	16	77859180	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	461012	77859180	12495573	336	11098											
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88643755	88643755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZC3H18	NM_144604	exon2	c.A224C	p.E75A	CAAGTGAGCCTAA	.	52	9	83	0	.	69	C	88643755	A	C	88643755	3	2	82	1	0	0	0	0	1	0	0	0	17565	304	11	5	226	5	ZC3H18	16	88643755	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	10784575	88643755	1710998	337	11099											
PELP1	27043	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	4576104	4576104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PELP1	NM_014389	exon16	c.G2182A	p.E728K	GGTTCTCAGGGCC	.	64	26	78	0	.	24	T	4576104	C	T	4576104	3	4	82	1	0	0	0	0	1	0	0	0	11725	835	29	3	1218	3	PELP1	17	4576104	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		4576104	76619106	338	11100											
PELP1	27043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4576404	4576404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PELP1	NM_014389	exon16	c.G1882A	p.A628T	GAGCAGCACAGGT	.	74	25	83	0	.	24	T	4576404	C	T	4576404	3	4	82	1	0	0	0	0	1	0	0	0	11725	710	25	3	1518	3	PELP1	17	4576404	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	300	4576404	76618806	339	11101											
DNAH2	146754	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7720031	7720031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNAH2	NM_020877	exon63	c.C9872T	p.A3291V	AGAAGGCCAGATG	.	88	27	134	1	.	102	T	7720031	C	T	7720031	3	4	82	1	0	0	0	0	1	0	0	0	4602	739	26	3	10122	3	DNAH2	17	7720031	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3143627	7720031	73475179	340	11102											
GLP2R	9340	broad.mit.edu;mdanderson.org	37	17	9729529	9729529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GLP2R	NM_004246	exon1	c.G149A	p.R50K	CTGGGAGGCCCTT	.	10	3	18	0	.	524	A	9729529	G	A	9729529	3	1	82	1	0	0	0	0	1	0	0	0	6453	1000	35	3	151	3	GLP2R	17	9729529	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2009498	9729529	71465681	341	11103											
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	12666558	12666558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MYOCD	NM_001146312	exon14	c.A2558G	p.E853G	GTGATGAGCATCT	.	194	124	155	0	.	93	G	12666558	A	G	12666558	3	3	82	1	0	0	0	0	1	0	0	0	10087	304	11	2	2624	2	MYOCD	17	12666558	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2937029	12666558	68528652	342	11104											
ADORA2B	136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15878262	15878262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADORA2B	NM_000676	exon2	c.A605G	p.Y202C	TGATCTACATTAA	.	165	102	189	1	.	228	G	15878262	A	G	15878262	3	3	82	1	0	0	0	0	1	0	0	0	328	391	14	2	611	2	ADORA2B	17	15878262	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3211704	15878262	65316948	343	11105											
SMCR7	125170	hgsc.bcm.edu;mdanderson.org	37	17	18167688	18167688	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SMCR7	NM_148886	exon4	c.G1008A	p.L336L	GGGGCTGGCGGGG	.	14	12	8	0	.	90	A	18167688	G	A	18167688	2	1	82	1	0	0	0	0	0	0	0	1	14790	1335	47	3		3	SMCR7	17	18167688	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2289426	18167688	63027522	344	11106											
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38711491	38711491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCR7	NM_001838	exon3	c.A640G	p.T214A	GCTCTGTGATGAG	.	205	28	135	0	.	659	C	38711491	T	C	38711491	3	2	82	1	0	0	0	0	1	0	0	0	2946	1696	59	2	500	2	CCR7	17	38711491	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	20543803	38711491	42483719	345	11107											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	38938637	38938637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KRT27	NM_181537	exon1	c.G109A	p.G37S	GCACACCGCATGT	.	145	13	117	0	.	90	T	38938637	C	T	38938637	3	4	82	1	0	0	0	0	1	0	0	0	8464	652	23	1	1302	1	KRT27	17	38938637	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	227146	38938637	42256573	346	11108											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61573828	61573828	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ACE	NM_000789	exon23	c.C3454T	p.L1152L	GGCCCCCTGCACA	.	335	198	339	1	.	94	T	61573828	C	T	61573828	2	4	82	1	0	0	0	0	0	0	0	1	136	680	24	3		3	ACE	17	61573828	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	22635191	61573828	19621382	347	11109											
KPNA2	3838	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66040550	66040550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KPNA2	NM_002266	exon9	c.G1278T	p.M426I	GTTGATGAACCTC	.	247	30	188	1	.	560	T	66040550	G	T	66040550	3	4	82	1	0	0	0	0	1	0	0	0	8430	1290	45	3	1308	3	KPNA2	17	66040550	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4466722	66040550	15154660	348	11110											
ABCA9	10350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67031425	67031425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ABCA9	NM_080283	exon8	c.C1090T	p.L364F	TAAGAAGACACAA	.	315	38	286	1	.	95	A	67031425	G	A	67031425	3	1	82	1	0	0	0	0	1	0	0	0	39	942	33	3	3912	3	ABCA9	17	67031425	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	990875	67031425	14163785	349	11111											
KCNJ2	3759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68171825	68171825	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNJ2	NM_000891	exon2	c.C645T	p.G215G	AGTGGGCAATCTT	.	144	22	102	0	.	90	T	68171825	C	T	68171825	2	4	82	1	0	0	0	0	0	0	0	1	8051	697	25	3		3	KCNJ2	17	68171825	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1140400	68171825	13023385	350	11112											
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72285791	72285791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNAI2	NM_001172810	exon5	c.A526G	p.R176G	GGCAACAGGAAGT	.	125	82	98	0	.	92	G	72285791	A	G	72285791	3	3	82	1	0	0	0	0	1	0	0	0	4610	179	7	2	540	2	DNAI2	17	72285791	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	4113966	72285791	8909419	351	11113											
ST6GALNAC2	10610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74569415	74569415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ST6GALNAC2	NM_006456	exon4	c.G392A	p.G131D	TCTGAGCCGTTCA	.	46	9	52	0	.	90	T	74569415	C	T	74569415	3	4	82	1	0	0	0	0	1	0	0	0	15223	739	26	3	756	3	ST6GALNAC2	17	74569415	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2283624	74569415	6625795	352	11114											
MFSD11	79157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74774280	74774280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MFSD11	NM_001242532	exon13	c.C1196A	p.A399E	TTTGCGCAGCCGT	.	285	31	203	0	.	91	A	74774280	C	A	74774280	3	1	82	1	0	0	0	0	1	0	0	0	9529	710	25	3	1246	3	MFSD11	17	74774280	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	204865	74774280	6420930	353	11115											
BAHCC1	57597	ucsc.edu;bcgsc.ca	37	17	79424536	79424536	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BAHCC1	.	.	.	.	GGCCGTGCTGGGG	.	46	9	53	0	.	23	T	79424536	G	T	79424536	2	4	82	1	0	0	0	0	0	0	0	1	1296	1306	46	3		3	BAHCC1	17	79424536	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4650256	79424536	1770674	354	11116											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9254383	9254383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ANKRD12	NM_015208	exon9	c.A1118G	p.K373R	TTAATAAGATGAT	.	95	10	105	0	.	92	G	9254383	A	G	9254383	3	3	82	1	0	0	0	0	1	0	0	0	640	72	3	2	1148	2	ANKRD12	18	9254383	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10		9254383	68822865	355	11117											
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44560523	44560523	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TCEB3B	NM_016427	exon1	c.T1113A	p.D371E	AGCCATATCTACC	.	58	10	98	0	.	156	T	44560523	A	T	44560523	3	4	82	1	0	0	0	0	1	0	0	0	15679	446	16	4	1152	4	TCEB3B	18	44560523	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	35306140	44560523	33516725	356	11118											
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4793795	4793795	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FEM1A	NM_018708	exon1	c.G1929A	p.A643A	CCTTGCGGCCCGG	.	67	11	42	0	.	90	A	4793795	G	A	4793795	2	1	82	1	0	0	0	0	0	0	0	1	5809	1103	39	1		1	FEM1A	19	4793795	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10		4793795	54335188	357	11119											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9049896	9049896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUC16	NM_024690	exon5	c.A31735G	p.R10579G	GACTTCTCTCTGC	.	299	54	213	1	.	566	C	9049896	T	C	9049896	3	2	82	1	0	0	0	0	1	0	0	0	9973	1559	54	2	12108	2	MUC16	19	9049896	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	4256101	9049896	50079087	358	11120											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9056445	9056445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUC16	NM_024690	exon3	c.C31001T	p.S10334F	GTTGAAGAGGAGA	.	262	31	200	0	.	566	A	9056445	G	A	9056445	3	1	82	1	0	0	0	0	1	0	0	0	9973	942	33	3	12850	3	MUC16	19	9056445	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	6549	9056445	50072538	359	11121											
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9641667	9641667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF426	NM_024106	exon7	c.A402G	p.I134M	CAATTGTATCCCA	.	91	9	87	0	.	91	C	9641667	T	C	9641667	3	2	82	1	0	0	0	0	1	0	0	0	17897	1628	57	2	1270	2	ZNF426	19	9641667	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	585222	9641667	49487316	360	11122											
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11888524	11888524	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF441	NM_152355	exon2	c.G102A	p.Q34Q	GATGCAGGAAACC	.	191	19	180	0	.	69	A	11888524	G	A	11888524	2	1	82	1	0	0	0	0	0	0	0	1	17911	991	35	3		3	ZNF441	19	11888524	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2246857	11888524	47240459	361	11123											
ZNF439	90594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11978948	11978948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF439	NM_152262	exon3	c.A1064G	p.E355G	CTTATGAATGTAA	.	94	11	76	0	.	91	G	11978948	A	G	11978948	3	3	82	1	0	0	0	0	1	0	0	0	17908	246	9	2	1074	2	ZNF439	19	11978948	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	90424	11978948	47150035	362	11124											
OR7C2	26658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15052324	15052324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR7C2	NM_012377	exon1	c.A24T	p.E8D	AACAGAAGTTGGA	.	131	14	89	0	.	71	T	15052324	A	T	15052324	3	4	82	1	0	0	0	0	1	0	0	0	11218	69	3	4	26	4	OR7C2	19	15052324	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3073376	15052324	44076659	363	11125											
IL12RB1	3594	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18183075	18183075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IL12RB1	NM_153701	exon9	c.T868C	p.S290P	GGCAGGACAGCAT	.	181	18	200	1	.	91	G	18183075	A	G	18183075	3	3	82	1	0	0	0	0	1	0	0	0	7626	275	10	2	1285	2	IL12RB1	19	18183075	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3130751	18183075	40945908	364	11126											
ELL	8178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18576653	18576653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ELL	NM_006532	exon3	c.G259A	p.D87N	GGTTGTCGCGGCC	.	57	7	75	0	.	1082	T	18576653	C	T	18576653	3	4	82	1	0	0	0	0	1	0	0	0	5062	884	31	1	1646	1	ELL	19	18576653	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	393578	18576653	40552330	365	11127											
ZNF714	148206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21299624	21299624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF714	NM_182515	exon5	c.T154C	p.S52P	TGTTCTTCTTTTA	.	76	42	79	0	.	67	C	21299624	T	C	21299624	3	2	82	1	0	0	0	0	1	0	0	0	18115	1783	62	2	164	2	ZNF714	19	21299624	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	2722971	21299624	37829359	366	11128											
ZFP30	22835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38127120	38127120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZFP30	NM_014898	exon6	c.A322G	p.R108G	TAATTCTTTCCAT	.	142	38	121	1	.	90	C	38127120	T	C	38127120	3	2	82	1	0	0	0	0	1	0	0	0	17641	1617	56	2	1241	2	ZFP30	19	38127120	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	16827496	38127120	21001863	367	11129											
TIMM50	92609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39980382	39980382	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TIMM50	NM_001001563	exon11	c.G1293A	p.E431E	GGCCGAGCTCTCC	.	162	20	93	0	.	91	A	39980382	G	A	39980382	2	1	82	1	0	0	0	0	0	0	0	1	15910	962	34	3		3	TIMM50	19	39980382	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1853262	39980382	19148601	368	11130											
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41131776	41131776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LTBP4	.	.	.	.	CTGGGAGTGTGCT	.	79	14	36	0	.	93	C	41131776	G	C	41131776	3	2	82	1	0	0	0	0	1	0	0	0	9076	1029	36	4	4458	4	LTBP4	19	41131776	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1151394	41131776	17997207	369	11131											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42859978	42859978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MEGF8	NM_001271938	exon24	c.G4213A	p.A1405T	GGCTCTGCCCGCT	.	57	9	76	0	.	23	A	42859978	G	A	42859978	3	1	82	1	0	0	0	0	1	0	0	0	9463	1319	46	3	4102	3	MEGF8	19	42859978	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1728202	42859978	16269005	370	11132											
ZNF222	7673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44536345	44536345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF222	NM_001129996	exon4	c.A638G	p.Y213C	AATGCTATAAGTG	.	267	30	200	0	.	93	G	44536345	A	G	44536345	3	3	82	1	0	0	0	0	1	0	0	0	17773	449	16	2	671	2	ZNF222	19	44536345	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1676367	44536345	14592638	371	11133											
SYNGR4	23546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48879425	48879425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYNGR4	NM_012451	exon5	c.G555A	p.M185I	TGGCATGGTGCTG	.	188	28	148	0	.	90	A	48879425	G	A	48879425	3	1	82	1	0	0	0	0	1	0	0	0	15448	1348	47	3	569	3	SYNGR4	19	48879425	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	4343080	48879425	10249558	372	11134											
SIGLEC11	114132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50464033	50464033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SIGLEC11	NM_052884	exon2	c.G236A	p.S79N	TTTGGGCTGGTCC	.	221	27	176	0	.	94	T	50464033	C	T	50464033	3	4	82	1	0	0	0	0	1	0	0	0	14307	797	28	3	1900	3	SIGLEC11	19	50464033	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1584608	50464033	8664950	373	11135											
KLK9	284366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51506441	51506441	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KLK9	NM_012315	exon5	c.A679C	p.R227R	GGGGTCTGGAGCA	.	79	9	65	0	.	226	G	51506441	T	G	51506441	2	3	82	1	0	0	0	0	0	0	0	1	8411	1588	55	5		5	KLK9	19	51506441	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1042408	51506441	7622542	374	11136											
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014631	53014631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001099694	exon6	c.C997T	p.H333Y	ACATGCCATCATA	.	218	37	163	0	.	.	T	53014631	C	T	53014631	3	4	82	1	0	0	0	0	1	0	0	0	18007	594	21	3	1007	3	ZNF578	19	53014631	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1508190	53014631	6114352	375	11137											
RPS9	6203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54705416	54705416	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RPS9	NM_001013	exon3	c.159delC	p.I53fs	CAAGATCCGCAAG	.	125	36	72	0	.	153	-	54705416	C	-	54705416	7	5	82	1	0	1	0	1	0	0	0	0	13662	845	30	0	165	0	RPS9	19	54705416	Frame_Shift_Del	DEL	C	TCGA-DD-A3A9-01A-11D-A25V-10	1690785	54705416	4423567	376	11138											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55453072	55453072	+	Missense_Mutation	SNP	G	G	A	rs142163492		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NLRP7	NM_001127255	exon2	c.C8T	p.S3L	TGGGGCGATGTCA	.	93	9	75	0	G|1.000;A|0.000	291	A	55453072	G	A	55453072	3	1	82	1	0	0	0	0	1	0	0	0	10482	1059	37	1	3145	1	NLRP7	19	55453072	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	747656	55453072	3675911	377	11139											
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56369470	56369470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NLRP4	NM_134444	exon3	c.G711T	p.Q237H	GCTGCAGGGCGGC	.	189	33	127	0	.	216	T	56369470	G	T	56369470	3	4	82	1	0	0	0	0	1	0	0	0	10479	991	35	3	717	3	NLRP4	19	56369470	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	916398	56369470	2759513	378	11140											
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58578913	58578913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF135	NM_007134	exon4	c.A1133T	p.Y378F	AACCCTATCAGTG	.	188	26	138	0	.	91	T	58578913	A	T	58578913	3	4	82	1	0	0	0	0	1	0	0	0	17722	449	16	4	1264	4	ZNF135	19	58578913	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2209443	58578913	550070	379	11141											
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	17616198	17616198	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RRBP1	NM_004587	exon7	c.G1150T	p.E384X	TGCTCTCCACCTG	.	69	21	65	0	.	92	A	17616198	C	A	17616198	4	1	82	1	0	0	0	0	0	1	0	0	13678	864	30	3	1859	3	RRBP1	20	17616198	Nonsense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		17616198	45409322	380	11142											
THBD	7056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	23028767	23028767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	THBD	NM_000361	exon1	c.C1375T	p.P459S	TACCGGGGAGGTT	.	129	20	129	0	.	90	A	23028767	G	A	23028767	3	1	82	1	0	0	0	0	1	0	0	0	15849	1232	43	3	356	3	THBD	20	23028767	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	5412569	23028767	39996753	381	11143											
CEP250	11190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34090341	34090341	+	Silent	SNP	A	A	C	rs151254784	byfrequency	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CEP250	NM_007186	exon30	c.A4144C	p.R1382R	GACCTGAGAACGG	.	168	26	137	1	A|1.000;C|0.000	27	C	34090341	A	C	34090341	2	2	82	1	0	0	0	0	0	0	0	1	3252	296	11	5		5	CEP250	20	34090341	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	11061574	34090341	28935179	382	11144											
C20orf24	55969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35238002	35238002	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C20orf24	NM_001199534	exon3	c.219-2A>T	.	TGCTCCAGATTCT	.	229	26	180	0	.	90	T	35238002	A	T	35238002	5	4	82	1	0	0	0	0	0	0	1	0	2105	202	7	4	227	4	C20orf24	20	35238002	Splice_Site	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1147661	35238002	27787518	383	11145											
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39833219	39833219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZHX3	NM_015035	exon3	c.G338A	p.G113E	CTGCACCCACTGC	.	96	20	84	0	.	93	T	39833219	C	T	39833219	3	4	82	1	0	0	0	0	1	0	0	0	17674	623	22	3	2540	3	ZHX3	20	39833219	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4595217	39833219	23192301	384	11146											
PABPC1L	80336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43566743	43566743	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PABPC1L	NM_001124756	exon13	c.C1687G	p.L563V	ACCCAGCTGGCTG	.	195	38	140	0	.	47	G	43566743	C	G	43566743	3	3	82	1	0	0	0	0	1	0	0	0	11364	796	28	4	1737	4	PABPC1L	20	43566743	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3733524	43566743	19458777	385	11147											
SLC13A3	64849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45204256	45204256	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC13A3	NM_022829	exon10	c.A1288T	p.I430F	GAAGGATGATGTT	.	116	21	114	1	.	91	A	45204256	T	A	45204256	3	1	82	1	0	0	0	0	1	0	0	0	14393	1464	51	4	536	4	SLC13A3	20	45204256	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	1637513	45204256	17821264	386	11148											
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49212742	49212742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM65C	NM_080829	exon15	c.G1837A	p.A613T	CACCGGCTGTGAG	.	147	19	115	0	.	92	T	49212742	C	T	49212742	3	4	82	1	0	0	0	0	1	0	0	0	5601	797	28	3	1035	3	FAM65C	20	49212742	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	4008486	49212742	13812778	387	11149											
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58489028	58489028	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYCP2	NM_014258	exon12	c.830+2T>C	.	AAGTTTACCTTCT	.	133	22	83	0	.	525	G	58489028	A	G	58489028	5	3	82	1	0	0	0	0	0	0	1	0	15429	405	14	2	3896	2	SYCP2	20	58489028	Splice_Site	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	9276286	58489028	4536492	388	11150											
TCFL5	10732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61488865	61488865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TCFL5	NM_006602	exon4	c.G1120A	p.G374S	AAGCGCCTTGTGT	.	172	19	116	0	.	581	T	61488865	C	T	61488865	3	4	82	1	0	0	0	0	1	0	0	0	15696	681	24	3	394	3	TCFL5	20	61488865	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2999837	61488865	1536655	389	11151											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15579225	15579225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LIPI	NM_198996	exon1	c.A20G	p.H7R	TTATTATGTAAAC	.	58	14	48	0	.	70	C	15579225	T	C	15579225	3	2	82	1	0	0	0	0	1	0	0	0	8825	1464	51	2	1465	2	LIPI	21	15579225	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10		15579225	32550670	390	11152											
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32638540	32638540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TIAM1	NM_003253	exon5	c.G749T	p.G250V	TTGCTCCCCGGCC	.	73	9	112	0	.	724	A	32638540	C	A	32638540	3	1	82	1	0	0	0	0	1	0	0	0	15887	623	22	3	4126	3	TIAM1	21	32638540	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	17059315	32638540	15491355	391	11153											
AIRE	326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45709596	45709596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AIRE	NM_000383	exon6	c.G709A	p.E237K	AAGTTCGAAGACT	.	132	27	159	1	.	91	A	45709596	G	A	45709596	3	1	82	1	0	0	0	0	1	0	0	0	437	1059	37	1	731	1	AIRE	21	45709596	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	13071056	45709596	2420299	392	11154											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47754602	47754602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCNT	NM_006031	exon3	c.G559T	p.V187F	TTCACAGTCAGTG	.	319	38	309	0	.	141	T	47754602	G	T	47754602	3	4	82	1	0	0	0	0	1	0	0	0	11590	1029	36	3	569	3	PCNT	21	47754602	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	2045006	47754602	375293	393	11155											
DIP2A	23181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47931358	47931358	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DIP2A	NM_206891	exon8	c.G933A	p.K311K	GCCAAAGCCTGAG	.	98	22	96	1	.	24	A	47931358	G	A	47931358	2	1	82	1	0	0	0	0	0	0	0	1	4527	962	34	3		3	DIP2A	21	47931358	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	176756	47931358	198537	394	11156											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18347690	18347690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MICAL3	NM_001136004	exon23	c.G2952A	p.V984V	GCTGGCCACGGCG	.	148	29	129	0	.	68	T	18347690	C	T	18347690	2	4	82	1	0	0	0	0	0	0	0	1	9571	581	21	3		3	MICAL3	22	18347690	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		18347690	32956876	395	11157											
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	30899672	30899672	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEC14L4	NM_001161368	exon2	c.G122A	p.W41X	CGCAGCCAGCGCA	.	72	13	62	0	.	91	T	30899672	C	T	30899672	4	4	82	1	0	0	0	0	0	1	0	0	13984	595	21	3	1148	3	SEC14L4	22	30899672	Nonsense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	12551982	30899672	20404894	396	11158											
EIF3D	8664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36920731	36920731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EIF3D	NM_003753	exon4	c.A218G	p.H73R	TCCTCATGGAAAT	.	210	42	147	0	.	69	C	36920731	T	C	36920731	3	2	82	1	0	0	0	0	1	0	0	0	5014	1464	51	2	1476	2	EIF3D	22	36920731	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	6021059	36920731	14383835	397	11159											
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42606358	42606358	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TCF20	NM_181492	exon1	c.G4954C	p.A1652P	CCTCAGCATTGAT	.	326	34	317	0	.	95	G	42606358	C	G	42606358	3	3	82	1	0	0	0	0	1	0	0	0	15687	710	25	4	966	4	TCF20	22	42606358	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	5685627	42606358	8698208	398	11160											
RIBC2	26150	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	45810271	45810271	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RIBC2	.	.	.	.	AGCTAGACATGAA	.	94	19	66	0	.	90	G	45810271	A	G	45810271	2	3	82	1	0	0	0	0	0	0	0	1	13353	272	10	2		2	RIBC2	22	45810271	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	3203913	45810271	5494295	399	11161											
GRAMD4	23151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	47059981	47059981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRAMD4	NM_015124	exon7	c.G684T	p.W228C	CGACTGGTACTCC	.	228	63	202	1	.	23	T	47059981	G	T	47059981	3	4	82	1	0	0	0	0	1	0	0	0	6752	1270	44	3	710	3	GRAMD4	22	47059981	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1249710	47059981	4244585	400	11162											
GPM6B	2824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13801604	13801604	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPM6B	NM_001001995	exon4	c.G405A	p.A135A	AAAGGACGCAATT	.	210	29	209	0	.	130	T	13801604	C	T	13801604	2	4	82	1	0	0	0	0	0	0	0	1	6616	523	19	1		1	GPM6B	23	13801604	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10		13801604	141468956	401	11163											
MOSPD2	158747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14910893	14910893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MOSPD2	NM_152581	exon3	c.A128G	p.D43G	AACAAGATGATAA	.	177	25	179	0	.	130	G	14910893	A	G	14910893	3	3	82	1	0	0	0	0	1	0	0	0	9716	333	12	2	138	2	MOSPD2	23	14910893	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1109289	14910893	140359667	402	11164											
RAI2	10742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17818831	17818831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAI2	NM_001172739	exon3	c.T1300C	p.S434P	CCTGGGACTCGCC	.	58	12	58	0	.	131	G	17818831	A	G	17818831	3	3	82	1	0	0	0	0	1	0	0	0	13009	275	10	2	296	2	RAI2	23	17818831	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	2907938	17818831	137451729	403	11165											
PDHA1	5160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19371270	19371270	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PDHA1	NM_001173454	exon6	c.C603T	p.G201G	CGGGGGCAATGGC	.	308	54	325	1	.	227	T	19371270	C	T	19371270	2	4	82	1	0	0	0	0	0	0	0	1	11664	697	25	3		3	PDHA1	23	19371270	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1552439	19371270	135899290	404	11166											
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26212302	26212302	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAGEB6	NM_173523	exon2	c.C339A	p.G113G	CACTGGCTCTCCT	.	215	59	192	0	.	133	A	26212302	C	A	26212302	2	1	82	1	0	0	0	0	0	0	0	1	9179	784	28	3		3	MAGEB6	23	26212302	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	6841032	26212302	129058258	405	11167											
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34150303	34150303	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM47A	NM_203408	exon1	c.G93A	p.A31A	GCACTTCGCGAAG	.	270	39	284	1	.	134	T	34150303	C	T	34150303	2	4	82	1	0	0	0	0	0	0	0	1	5569	871	31	1		1	FAM47A	23	34150303	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	7938001	34150303	121120257	406	11168											
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47062208	47062208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	UBA1	NM_153280	exon11	c.A1228G	p.M410V	GAAGTCATGAAGG	.	102	17	84	0	.	227	G	47062208	A	G	47062208	3	3	82	1	0	0	0	0	1	0	0	0	16824	217	8	2	1266	2	UBA1	23	47062208	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	12911905	47062208	108208352	407	11169											
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	49103272	49103272	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC22	NM_014008	exon7	c.C795T	p.A265A	TGGGGCCCCCATA	.	33	8	45	0	.	130	T	49103272	C	T	49103272	2	4	82	1	0	0	0	0	0	0	0	1	2797	610	22	3		3	CCDC22	23	49103272	Silent	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	2041064	49103272	106167288	408	11170											
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50037910	50037910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCNB3	NM_033031	exon4	c.G252C	p.E84D	TAAAGAGTTTGTA	.	191	38	213	0	.	482	C	50037910	G	C	50037910	3	2	82	1	0	0	0	0	1	0	0	0	2914	1020	36	4	262	4	CCNB3	23	50037910	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	934638	50037910	105232650	409	11171											
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50147103	50147103	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DGKK	.	.	.	.	ACATTGCAGTGCT	.	108	18	116	0	.	227	T	50147103	C	T	50147103	1	4	82	0	1	0	0	0	0	0	0	0	4472	710	25	3		3	DGKK	23	50147103	RNA	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	109193	50147103	105123457	410	11172											
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50345797	50345797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SHROOM4	NM_020717	exon7	c.T3778C	p.F1260L	GCGAAAAGTGCTG	.	92	19	152	0	.	131	G	50345797	A	G	50345797	3	3	82	1	0	0	0	0	1	0	0	0	14296	72	3	2	715	2	SHROOM4	23	50345797	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	198694	50345797	104924763	411	11173											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53563161	53563161	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HUWE1	NM_031407	exon80	c.C12478G	p.L4160V	CCAGCAGATAAAC	.	253	56	294	0	.	280	C	53563161	G	C	53563161	3	2	82	1	0	0	0	0	1	0	0	0	7461	933	33	4	666	4	HUWE1	23	53563161	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	3217364	53563161	101707399	412	11174											
SPIN4	139886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62570078	62570078	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPIN4	NM_001012968	exon1	c.T621C	p.H207H	TTTGGCATGCTCC	.	192	44	239	0	.	109	G	62570078	A	G	62570078	2	3	82	1	0	0	0	0	0	0	0	1	15055	214	8	2		2	SPIN4	23	62570078	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	9006917	62570078	92700482	413	11175											
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70320820	70320820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FOXO4	NM_005938	exon2	c.G740A	p.R247H	GAAACCGTGAAGA	.	116	30	140	0	.	986	A	70320820	G	A	70320820	3	1	82	1	0	0	0	0	1	0	0	0	6025	1145	40	1	746	1	FOXO4	23	70320820	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	7750742	70320820	84949740	414	11176											
CYSLTR1	10800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77528233	77528233	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CYSLTR1	NM_006639	exon3	c.A1011G	p.V337V	AAACTATACTTTA	.	122	22	166	0	.	131	C	77528233	T	C	77528233	2	2	82	1	0	0	0	0	0	0	0	1	4201	1393	49	2		2	CYSLTR1	23	77528233	Silent	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	7207413	77528233	77742327	415	11177											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83129239	83129239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CYLC1	NM_021118	exon4	c.A1523G	p.D508G	AGAAAGATATCAA	.	92	27	142	0	.	112	G	83129239	A	G	83129239	3	3	82	1	0	0	0	0	1	0	0	0	4141	333	12	2	1537	2	CYLC1	23	83129239	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	5601006	83129239	72141321	416	11178											
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91133861	91133861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDH11X	NM_001168363	exon2	c.G2622C	p.K874N	GAAGAAGAAGCAT	.	455	94	502	1	.	193	C	91133861	G	C	91133861	3	2	82	1	0	0	0	0	1	0	0	0	11508	933	33	4	2628	4	PCDH11X	23	91133861	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	8004622	91133861	64136699	417	11179											
FAM133A	286499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	92964819	92964819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM133A	NM_173698	exon4	c.A401G	p.K134R	AGAAAAAGAAGAA	.	40	12	45	1	.	130	G	92964819	A	G	92964819	3	3	82	1	0	0	0	0	1	0	0	0	5443	72	3	2	403	2	FAM133A	23	92964819	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	1830958	92964819	62305741	418	11180											
ARL13A	392509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100240896	100240896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ARL13A	NM_001162490	exon4	c.C371A	p.P124H	GGAAACCCATCTT	.	53	12	65	0	.	131	A	100240896	C	A	100240896	3	1	82	1	0	0	0	0	1	0	0	0	928	623	22	3	381	3	ARL13A	23	100240896	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	7276077	100240896	55029664	419	11181											
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105179196	105179196	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NRK	NM_198465	exon21	c.A3534G	p.S1178S	GGAATCACCTAAG	.	94	12	104	0	.	630	G	105179196	A	G	105179196	2	3	82	1	0	0	0	0	0	0	0	1	10655	146	6	2		2	NRK	23	105179196	Silent	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	4938300	105179196	50091364	420	11182											
MORC4	79710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106185319	106185319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MORC4	NM_001085354	exon16	c.G2509T	p.A837S	ATTCAGCTTGGCG	.	119	26	181	0	.	131	A	106185319	C	A	106185319	3	1	82	1	0	0	0	0	1	0	0	0	9704	797	28	3	312	3	MORC4	23	106185319	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	1006123	106185319	49085241	421	11183											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117752606	117752606	+	Missense_Mutation	SNP	A	A	G	rs112023398		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DOCK11	NM_144658	exon31	c.A3386G	p.D1129G	TTCAGGACAATTA	.	256	57	325	0	A|0.500;G|0.500	93	G	117752606	A	G	117752606	3	3	82	1	0	0	0	0	1	0	0	0	4686	275	10	2	3508	2	DOCK11	23	117752606	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	11567287	117752606	37517954	422	11184											
ZNF280C	55609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	129349772	129349772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF280C	NM_017666	exon14	c.A1831T	p.N611Y	TTATGTTCTTCAA	.	78	14	82	0	.	132	A	129349772	T	A	129349772	3	1	82	1	0	0	0	0	1	0	0	0	17813	1783	62	4	406	4	ZNF280C	23	129349772	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	11597166	129349772	25920788	423	11185											
FRMD7	90167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131212020	131212020	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FRMD7	NM_194277	exon12	c.C2025T	p.A675A	GATTCTGGCCATG	.	346	49	433	0	.	228	A	131212020	G	A	131212020	2	1	82	1	0	0	0	0	0	0	0	1	6055	1335	47	3		3	FRMD7	23	131212020	Silent	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	1862248	131212020	24058540	424	11186											
RBMX	27316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135957309	135957309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RBMX	NM_001164803	exon6	c.T476C	p.V159A	ATCACGACCATAT	.	141	23	183	0	.	131	G	135957309	A	G	135957309	3	3	82	1	0	0	0	0	1	0	0	0	13151	275	10	2	437	2	RBMX	23	135957309	Missense_Mutation	SNP	A	TCGA-DD-A3A9-01A-11D-A25V-10	4745289	135957309	19313251	425	11187											
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149638231	149638231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAMLD1	NM_005491	exon3	c.T386C	p.L129S	AGTCATTACTGCT	.	141	19	130	0	.	130	C	149638231	T	C	149638231	3	2	82	1	0	0	0	0	1	0	0	0	9208	1764	61	2	396	2	MAMLD1	23	149638231	Missense_Mutation	SNP	T	TCGA-DD-A3A9-01A-11D-A25V-10	13680922	149638231	5632329	426	11188											
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153284220	153284220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IRAK1	NM_001569	exon5	c.G559A	p.V187M	GGGACACTGAGCT	.	192	28	190	0	.	1074	T	153284220	C	T	153284220	3	4	82	1	0	0	0	0	1	0	0	0	7821	565	20	3	1619	3	IRAK1	23	153284220	Missense_Mutation	SNP	C	TCGA-DD-A3A9-01A-11D-A25V-10	3645989	153284220	1986340	427	11189											
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153580981	153580981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLNA	NM_001110556	exon40	c.C6442A	p.R2148S	CCCGACGCCTGCG	.	162	28	228	0	.	599	T	153580981	G	T	153580981	3	4	82	1	0	0	0	0	1	0	0	0	5933	1087	38	1	1537	1	FLNA	23	153580981	Missense_Mutation	SNP	G	TCGA-DD-A3A9-01A-11D-A25V-10	296761	153580981	1689579	428	11190											
IVL	3713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883644	152883644	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IVL	NM_005547	exon2	c.G1371C	p.V457V	GCAGGTGGGGCAG	.	167	61	160	0	.	93	C	152883644	G	C	152883644	2	2	83	1	0	0	0	0	0	0	0	1	7929	1335	47	4		4	IVL	1	152883644	Silent	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		152883644	96366977	1	11191											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155170766	155170766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon13	c.1470delG	p.G490fs	TTCCTGCCCAGAG	.	310	107	242	0	.	222	-	155170766	C	-	155170766	7	5	83	1	0	1	0	1	0	0	0	0	15852	726	26	0	1444	0	THBS3	1	155170766	Frame_Shift_Del	DEL	C	TCGA-DD-A4NA-01A-11D-A25V-10	2287122	155170766	94079855	2	11192											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	155175006	155175006	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon3	c.C388T	p.R130X	GACCTCGGAGTCG	.	146	59	176	0	.	222	A	155175006	G	A	155175006	4	1	83	1	0	0	0	0	0	1	0	0	15852	1124	39	1	2566	1	THBS3	1	155175006	Nonsense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	4240	155175006	94075615	3	11193											
MEX3A	92312	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156051766	156051766	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MEX3A	NM_001093725	exon1	c.A24G	p.G8G	CATTATTCCAGAT	.	187	56	164	1	.	158	C	156051766	T	C	156051766	2	2	83	1	0	0	0	0	0	0	0	1	9509	1770	62	2		2	MEX3A	1	156051766	Silent	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10	876760	156051766	93198855	4	11194											
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	42488346	42488346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	EML4	NM_019063	exon4	c.C424T	p.R142X	CAAATTCGAGCAT	.	54	9	37	0	.	3734	T	42488346	C	T	42488346	4	4	83	1	0	0	0	0	0	1	0	0	5099	876	31	1	438	1	EML4	2	42488346	Nonsense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10		42488346	200711027	5	11195											
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	103013028	103013028	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IL18R1	NM_003855	exon10	c.C1308T	p.S436S	GAAAAGCCGAAGA	.	97	5	64	0	.	93	T	103013028	C	T	103013028	2	4	83	1	0	0	0	0	0	0	0	1	7647	738	26	3		3	IL18R1	2	103013028	Silent	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	60524682	103013028	140186345	6	11196											
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128366325	128366325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MYO7B	NM_001080527	exon22	c.G2686A	p.A896T	CAAGGCGCTCTCC	.	146	48	149	0	.	47	A	128366325	G	A	128366325	3	1	83	1	0	0	0	0	1	0	0	0	10083	1087	38	1	2768	1	MYO7B	2	128366325	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	25353297	128366325	114833048	7	11197											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170029679	170029679	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LRP2	NM_004525	exon57	c.C11070T	p.Y3690Y	GCAGCGGTAATTT	.	185	70	167	0	.	175	A	170029679	G	A	170029679	2	1	83	1	0	0	0	0	0	0	0	1	8956	1256	44	3		3	LRP2	2	170029679	Silent	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	41663354	170029679	73169694	8	11198											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499	bycluster	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394G	p.R132G	CATGACGACCTAT	.	186	86	185	0	.	23522	C	209113113	G	C	209113113	3	2	83	1	0	0	0	0	1	0	0	0	7494	1058	37	4	878	4	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	39083434	209113113	34086260	9	11199											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52440918	52440918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	BAP1,uveal_tract,malignant_melanoma,+2	BAP1	NM_004656	exon8	c.T586G	p.W196G	CCCCCCAGGGCCC	.	98	54	135	0	.	1032	C	52440918	A	C	52440918	3	2	83	1	0	0	0	0	1	0	0	0	1311	188	7	5	1643	5	BAP1	3	52440918	Missense_Mutation	SNP	A	TCGA-DD-A4NA-01A-11D-A25V-10		52440918	145581512	10	11200											
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195512355	195512355	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC4	NM_018406	exon2	c.G6096A	p.P2032P	AGGAAGCGGCGTG	.	674	59	634	1	.	90	T	195512355	C	T	195512355	2	4	83	1	0	0	0	0	0	0	0	1	9978	755	27	1		1	MUC4	3	195512355	Silent	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	143071437	195512355	2510075	11	11201											
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144134995	144134995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	USP38	NM_032557	exon9	c.T1866C	p.P622P	TTGTCCTTCCTCT	.	144	57	103	0	.	660	C	144134995	T	C	144134995	2	2	83	1	0	0	0	0	0	0	0	1	17066	1596	56	2		2	USP38	4	144134995	Silent	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10		144134995	47019281	12	11202											
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78322295	78322295	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DMGDH	NM_013391	exon13	c.C2142T	p.A714A	ATTCATGGCATAG	.	278	100	241	0	.	94	A	78322295	G	A	78322295	2	1	83	1	0	0	0	0	0	0	0	1	4581	1335	47	3		3	DMGDH	5	78322295	Silent	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		78322295	102592965	13	11203											
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692416	135692416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001167576	exon2	c.C660T	p.N220N	GTAGGCGTTCATG	.	238	103	235	1	.	.	A	135692416	G	A	135692416	2	1	83	1	0	0	0	0	0	0	0	1	16581	1136	40	1		1	TRPC7	5	135692416	Silent	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	57370121	135692416	45222844	14	11204											
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736726	170736726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TLX3	NM_021025	exon1	c.C357A	p.S119R	CTCCAGCCTTGGC	.	32	10	61	0	.	658	A	170736726	C	A	170736726	3	1	83	1	0	0	0	0	1	0	0	0	15959	738	26	3	359	3	TLX3	5	170736726	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	35044310	170736726	10178534	15	11205											
RPP40	10799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4996590	4996590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RPP40	NM_006638	exon6	c.A624C	p.K208N	TGCTACTTTTGGC	.	125	49	94	0	.	90	G	4996590	T	G	4996590	3	3	83	1	0	0	0	0	1	0	0	0	13614	1606	56	5	479	5	RPP40	6	4996590	Missense_Mutation	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10		4996590	166118477	16	11206											
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30457628	30457628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HLA-E	NM_005516	exon2	c.C190A	p.P64T	GCGAGTCCGAGGA	.	47	14	96	0	.	516	A	30457628	C	A	30457628	3	1	83	1	0	0	0	0	1	0	0	0	7210	855	30	3	196	3	HLA-E	6	30457628	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	25461038	30457628	140657439	17	11207											
PDE7B	27115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136268612	136268612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PDE7B	NM_018945	exon2	c.32delA	p.E11fs	GTGGCGAAATCTT	.	82	56	128	0	.	91	-	136268612	A	-	136268612	7	5	83	1	0	1	0	1	0	0	0	0	11652	246	9	0	38	0	PDE7B	6	136268612	Frame_Shift_Del	DEL	A	TCGA-DD-A4NA-01A-11D-A25V-10	105810984	136268612	34846455	18	11208											
TNRC18	84629	hgsc.bcm.edu;bcgsc.ca	37	7	5353127	5353127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TNRC18	NM_001080495	exon27	c.C7395A	p.D2465E	CTCGTGGTCCAGT	.	69	4	92	0	.	46	T	5353127	G	T	5353127	3	4	83	1	0	0	0	0	1	0	0	0	16336	1252	44	3	1527	3	TNRC18	7	5353127	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		5353127	153785536	19	11209											
ZNF804B	219578	bcgsc.ca;mdanderson.org	37	7	88965873	88965873	+	Missense_Mutation	SNP	T	T	A	rs147794726	byfrequency;alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ZNF804B	NM_181646	exon4	c.T3577A	p.S1193T	CCGGCCTCAACCG	.	359	21	250	2	T|0.989;C|0.011	101	A	88965873	T	A	88965873	3	1	83	1	0	0	0	0	1	0	0	0	18168	1551	54	4	3591	4	ZNF804B	7	88965873	Missense_Mutation	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10	83612746	88965873	70172790	20	11210											
TAS2R39	259285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142881004	142881004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TAS2R39	NM_176881	exon1	c.T493C	p.S165P	TGGCTGTCCGTGT	.	191	63	156	1	.	1	C	142881004	T	C	142881004	3	2	83	1	0	0	0	0	1	0	0	0	15573	1667	58	2	495	2	TAS2R39	7	142881004	Missense_Mutation	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10	53915131	142881004	16257659	21	11211											
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45486412	45486412	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RASSF4	NM_032023	exon9	c.A702G	p.K234K	ATTAAAAGACTGC	.	41	15	35	0	.	290	G	45486412	A	G	45486412	2	3	83	1	0	0	0	0	0	0	0	1	13088	69	3	2		2	RASSF4	10	45486412	Silent	SNP	A	TCGA-DD-A4NA-01A-11D-A25V-10		45486412	90048335	22	11212											
SAMD8	142891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76910777	76910777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SAMD8	NM_144660	exon2	c.G491T	p.G164V	TATTTGGATTTAC	.	111	43	147	1	.	90	T	76910777	G	T	76910777	3	4	83	1	0	0	0	0	1	0	0	0	13825	1174	41	3	493	3	SAMD8	10	76910777	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	31424365	76910777	58623970	23	11213											
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117263284	117263284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CEP164	NM_001271933	exon18	c.G2443T	p.G815W	TGCCTTGGGCAAG	.	143	45	100	0	.	69	T	117263284	G	T	117263284	3	4	83	1	0	0	0	0	1	0	0	0	3249	1348	47	3	2500	3	CEP164	11	117263284	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		117263284	17743232	24	11214											
IRAK4	51135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44176211	44176211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IRAK4	NM_016123	exon9	c.T1043C	p.I348T	GCAGAATTGTGGG	.	89	37	76	0	.	1366	C	44176211	T	C	44176211	3	2	83	1	0	0	0	0	1	0	0	0	7825	1493	52	2	1073	2	IRAK4	12	44176211	Missense_Mutation	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10		44176211	89675684	25	11215											
TMEM5	10329	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64196151	64196151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TMEM5	NM_014254	exon4	c.G709A	p.V237M	AATGACGTGGATG	.	91	24	76	1	.	90	A	64196151	G	A	64196151	3	1	83	1	0	0	0	0	1	0	0	0	16171	1145	40	1	723	1	TMEM5	12	64196151	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	20019940	64196151	69655744	26	11216											
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2327903	2327903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ABCA3	NM_001089	exon31	c.C4886T	p.A1629V	ACGAAGGCCTTGA	.	32	13	34	0	.	1015	A	2327903	G	A	2327903	3	1	83	1	0	0	0	0	1	0	0	0	33	1203	42	3	240	3	ABCA3	16	2327903	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		2327903	88026850	27	11217											
SLC6A2	6530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55725913	55725913	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SLC6A2	NM_001172501	exon6	c.T867C	p.N289N	CTCCAATGGCATC	.	123	52	152	1	.	526	C	55725913	T	C	55725913	2	2	83	1	0	0	0	0	0	0	0	1	14683	1461	51	2		2	SLC6A2	16	55725913	Silent	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10	53398010	55725913	34628840	28	11218											
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	19285247	19285247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MAPK7	NM_002749	exon5	c.G1631A	p.G544E	AACGGGGGGCTGG	.	16	12	27	0	.	1402	A	19285247	G	A	19285247	3	1	83	1	0	0	0	0	1	0	0	0	9282	1232	43	3	1645	3	MAPK7	17	19285247	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		19285247	61909963	29	11219											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71437017	71437017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDK2	NM_001144952	exon6	c.C659T	p.P220L	TTAGGTGGGATGA	.	217	63	175	0	.	24	A	71437017	G	A	71437017	3	1	83	1	0	0	0	0	1	0	0	0	13969	1348	47	3	6019	3	SDK2	17	71437017	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	52151770	71437017	9758193	30	11220											
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3179635	3179635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	S1PR4	NM_003775	exon1	c.C845A	p.A282D	TCTGGGCCCAGGA	.	56	31	93	0	.	591	A	3179635	C	A	3179635	3	1	83	1	0	0	0	0	1	0	0	0	13796	739	26	3	847	3	S1PR4	19	3179635	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10		3179635	55949348	31	11221											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9033614	9033614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC16	NM_024690	exon9	c.G36323A	p.G12108D	ACCAGACCCTGCA	.	216	28	167	1	.	566	T	9033614	C	T	9033614	3	4	83	1	0	0	0	0	1	0	0	0	9973	507	18	3	7504	3	MUC16	19	9033614	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	5853979	9033614	50095369	32	11222											
PODNL1	79883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14046601	14046601	+	Missense_Mutation	SNP	C	C	T	rs147712582	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PODNL1	NM_024825	exon5	c.G448A	p.A150T	GATCCGCGACACG	.	57	24	84	1	C|1.000;T|0.000	90	T	14046601	C	T	14046601	3	4	83	1	0	0	0	0	1	0	0	0	12179	768	27	1	1106	1	PODNL1	19	14046601	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	5012987	14046601	45082382	33	11223											
LHB	3972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49519408	49519408	+	Missense_Mutation	SNP	G	G	C	rs201749590	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LHB	NM_000894	exon3	c.C343G	p.R115G	TGCTGCGGCGGCA	.	54	21	70	0	G|0.999;A|0.000	90	C	49519408	G	C	49519408	3	2	83	1	0	0	0	0	1	0	0	0	8761	1116	39	4	86	4	LHB	19	49519408	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	35472807	49519408	9609575	34	11224											
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1299029	1299029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDCBP2	NM_080489	exon4	c.A158T	p.Y53F	CCCATATAATTTT	.	58	20	66	0	.	154	A	1299029	T	A	1299029	3	1	83	1	0	0	0	0	1	0	0	0	13956	1406	49	4	744	4	SDCBP2	20	1299029	Missense_Mutation	SNP	T	TCGA-DD-A4NA-01A-11D-A25V-10		1299029	61726491	35	11225											
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45810827	45810827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TRPM2	NM_003307	exon10	c.C1359G	p.D453E	CTGGGACCACCAG	.	132	53	106	0	.	92	G	45810827	C	G	45810827	3	3	83	1	0	0	0	0	1	0	0	0	16583	506	18	4	1397	4	TRPM2	21	45810827	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10		45810827	2319068	36	11226											
MED15	51586	hgsc.bcm.edu;bcgsc.ca	37	22	20939289	20939289	+	Missense_Mutation	SNP	G	G	T	rs147995933	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MED15	NM_001003891	exon15	c.G1951T	p.G651C	ATTCACGGCCCAC	.	75	4	78	0	G|1.000;A|0.000	211	T	20939289	G	T	20939289	3	4	83	1	0	0	0	0	1	0	0	0	9433	1116	39	1	2009	1	MED15	22	20939289	Missense_Mutation	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		20939289	30365277	37	11227											
SGSM1	129049	broad.mit.edu;bcgsc.ca	37	22	25246291	25246291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SGSM1	NM_001098497	exon5	c.C347A	p.P116Q	AGCTGCCGAAGCT	.	117	36	90	2	.	27	A	25246291	C	A	25246291	3	1	83	1	0	0	0	0	1	0	0	0	14222	652	23	1	365	1	SGSM1	22	25246291	Missense_Mutation	SNP	C	TCGA-DD-A4NA-01A-11D-A25V-10	4307002	25246291	26058275	38	11228											
HCCS	3052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11139831	11139831	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HCCS	NM_001122608	exon7	c.G708A	p.K236K	CAACAAGGACTAC	.	205	70	226	0	.	226	A	11139831	G	A	11139831	2	1	83	1	0	0	0	0	0	0	0	1	6990	991	35	3		3	HCCS	23	11139831	Silent	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10		11139831	144130729	39	11229											
GEMIN8	54960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14027050	14027050	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	GEMIN8	NM_017856	exon5	c.C711T	p.V237V	GGGGATGACCGGC	.	233	83	257	0	.	130	A	14027050	G	A	14027050	2	1	83	1	0	0	0	0	0	0	0	1	6334	1277	45	3		3	GEMIN8	23	14027050	Silent	SNP	G	TCGA-DD-A4NA-01A-11D-A25V-10	2887219	14027050	141243510	40	11230											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150532541	150532541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ADAMTSL4	NM_019032	exon19	c.C3094A	p.Q1032K	GATGATCAATGCA	.	188	46	184	0	.	92	A	150532541	C	A	150532541	3	1	84	1	0	0	0	0	1	0	0	0	277	827	29	3	3235	3	ADAMTSL4	1	150532541	Missense_Mutation	SNP	C	TCGA-DD-A4NB-01A-12D-A25V-10		150532541	98718080	1	11231											
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	234041461	234041461	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SLC35F3	NM_173508	exon2	c.C240T	p.I80I	GCGCATCACTGGC	.	292	75	230	0	.	92	T	234041461	C	T	234041461	2	4	84	1	0	0	0	0	0	0	0	1	14590	816	29	3		3	SLC35F3	1	234041461	Silent	SNP	C	TCGA-DD-A4NB-01A-12D-A25V-10	83508920	234041461	15209160	2	11232											
MYT1L	23040	broad.mit.edu;bcgsc.ca	37	2	1915796	1915796	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MYT1L	NM_015025	exon12	c.C1699G	p.R567G	ACCTTCGGTGGGA	.	101	7	135	1	.	95	C	1915796	G	C	1915796	3	2	84	1	0	0	0	0	1	0	0	0	10107	1124	39	4	1911	4	MYT1L	2	1915796	Missense_Mutation	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10		1915796	241283577	3	11233											
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165946841	165946841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SCN3A	NM_006922	exon28	c.A5822G	p.K1941R	TCTTGTTTTATAG	.	335	84	271	0	.	141	C	165946841	T	C	165946841	3	2	84	1	0	0	0	0	1	0	0	0	13918	1841	64	2	184	2	SCN3A	2	165946841	Missense_Mutation	SNP	T	TCGA-DD-A4NB-01A-12D-A25V-10	164031045	165946841	77252532	4	11234											
NEUROD1	4760	hgsc.bcm.edu;bcgsc.ca	37	2	182542873	182542885	+	Frame_Shift_Del	DEL	CATGGGAGCTGTC	CATGGGAGCTGTC	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	CATGGGAGCTGTC	CATGGGAGCTGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	NEUROD1	NM_002500	exon2	c.703_715del	p.235_239del	GGAAGACATGGGA	.	100	10	142	0	.	91	-	182542885	CATGGGAGCTGTC	-	182542873	7	5	84	1	0	1	0	1	0	0	0	0	10348	478	17	0	359	0	NEUROD1	2	182542873	Frame_Shift_Del	DEL	CATGGGAGCTGTC	TCGA-DD-A4NB-01A-12D-A25V-10	16596032	182542873	60656500	5	11235											
CASP8	841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	202131436	202131437	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	CASP8	NM_001080125	exon2	c.404_405insAG	p.I135fs	TGCTGATTACCTA	.	154	29	150	0	.	660	AG	202131437	-	AG	202131436	7	5	84	1	0	1	1	0	0	0	0	0	2677	1493	52	0	410	0	CASP8	2	202131436	Frame_Shift_Ins	INS	-	TCGA-DD-A4NB-01A-12D-A25V-10	19588563	202131436	41067937	6	11236											
CPS1	1373	hgsc.bcm.edu;broad.mit.edu	37	2	211507320	211507322	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	CPS1	NM_001122633	exon26	c.3090_3092del	p.1030_1031del	AGACTTTGATGAG	.	303	24	384	0	.	162	-	211507322	TGA	-	211507320	7	5	84	1	0	1	0	1	0	0	0	0	3823	1809	63	0	3192	0	CPS1	2	211507320	In_Frame_Del	DEL	TGA	TCGA-DD-A4NB-01A-12D-A25V-10	9375884	211507320	31692053	7	11237											
UGT1A3	54659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234638003	234638003	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	UGT1A3	NM_019093	exon1	c.G231T	p.L77L	CACCCTGACAACC	.	225	46	214	1	.	24	T	234638003	G	T	234638003	2	4	84	1	0	0	0	0	0	0	0	1	16943	1277	45	3		3	UGT1A3	2	234638003	Silent	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10	23130683	234638003	8561370	8	11238											
FEZF2	55079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62356899	62356899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	FEZF2	NM_018008	exon4	c.C1113A	p.H371Q	TTTTTGGTGAAAG	.	130	16	177	2	.	278	T	62356899	G	T	62356899	3	4	84	1	0	0	0	0	1	0	0	0	5826	1252	44	3	274	3	FEZF2	3	62356899	Missense_Mutation	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10		62356899	135665531	9	11239											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108203986	108203986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MYH15	NM_014981	exon12	c.T1126C	p.F376L	GTTTAAATTTCAT	.	150	38	173	0	.	73	G	108203986	A	G	108203986	3	3	84	1	0	0	0	0	1	0	0	0	10034	101	4	2	4838	2	MYH15	3	108203986	Missense_Mutation	SNP	A	TCGA-DD-A4NB-01A-12D-A25V-10	45847087	108203986	89818444	10	11240											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	88012960	88012963	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	AFF1	NM_001166693	exon7	c.1207_1210del	p.403_404del	CATGTCAGTTCTG	.	114	18	124	0	.	289	-	88012963	AGTT	-	88012960	7	5	84	1	0	1	0	1	0	0	0	0	356	188	7	0	1250	0	AFF1	4	88012960	Frame_Shift_Del	DEL	AGTT	TCGA-DD-A4NB-01A-12D-A25V-10		88012960	103141316	11	11241											
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161903	161903	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PLEKHG4B	NM_052909	exon10	c.C1425T	p.S475S	GCAATCCTGCCAG	.	111	16	129	0	.	228	T	161903	C	T	161903	2	4	84	1	0	0	0	0	0	0	0	1	12072	668	24	3		3	PLEKHG4B	5	161903	Silent	SNP	C	TCGA-DD-A4NB-01A-12D-A25V-10		161903	180753357	12	11242											
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52193327	52193327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ITGA1	NM_181501	exon10	c.T1132C	p.S378P	GAAATGTCTCAGA	.	90	15	94	0	.	228	C	52193327	T	C	52193327	3	2	84	1	0	0	0	0	1	0	0	0	7872	1667	58	2	1170	2	ITGA1	5	52193327	Missense_Mutation	SNP	T	TCGA-DD-A4NB-01A-12D-A25V-10	52031424	52193327	128721933	13	11243											
MGAT4B	11282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179226059	179226059	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MGAT4B	NM_054013	exon10	c.C1257T	p.S419S	GCTCGTGCTCACC	.	367	42	348	0	.	90	A	179226059	G	A	179226059	2	1	84	1	0	0	0	0	0	0	0	1	9546	1310	46	3		3	MGAT4B	5	179226059	Silent	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10	127032732	179226059	1689201	14	11244											
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27100892	27100892	+	Silent	SNP	G	G	A	rs201354380		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HIST1H2AG	NM_021064	exon1	c.G42A	p.K14K	CGCTAAGGCCAAG	.	74	7	99	0	G|0.999;A|0.001	68	A	27100892	G	A	27100892	2	1	84	1	0	0	0	0	0	0	0	1	7133	991	35	3		3	HIST1H2AG	6	27100892	Silent	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10		27100892	144014175	15	11245											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92734353	92734353	+	Missense_Mutation	SNP	G	G	A	rs138478808	byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SAMD9	NM_001193307	exon2	c.C1058T	p.T353M	TTTTTCGTAATGT	.	69	13	98	0	G|0.999;A|0.001	140	A	92734353	G	A	92734353	3	1	84	1	0	0	0	0	1	0	0	0	13826	1145	40	1	3715	1	SAMD9	7	92734353	Missense_Mutation	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10		92734353	66404310	16	11246											
PAX5	5079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	37002701	37002701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PAX5	NM_016734	exon5	c.G548A	p.G183D	AGGATGCCGCTGA	.	132	6	182	0	.	1851	T	37002701	C	T	37002701	3	4	84	1	0	0	0	0	1	0	0	0	11482	739	26	3	651	3	PAX5	9	37002701	Missense_Mutation	SNP	C	TCGA-DD-A4NB-01A-12D-A25V-10		37002701	104210730	17	11247											
FPGS	2356	broad.mit.edu;ucsc.edu	37	9	130569921	130569921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	FPGS	NM_004957	exon8	c.G698T	p.G233V	TCCTGGGGGATAC	.	70	5	100	1	.	90	T	130569921	G	T	130569921	3	4	84	1	0	0	0	0	1	0	0	0	6036	1232	43	3	728	3	FPGS	9	130569921	Missense_Mutation	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10	93567220	130569921	10643510	18	11248											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1263483	1263484	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_002458	exon31	c.5373_5374del	p.1791_1792del	GTGGACAGAGTGG	.	235	42	292	0	.	.	-	1263484	AG	-	1263483	7	5	84	1	0	1	0	1	0	0	0	0	9979	175	7	0	5504	0	MUC5B	11	1263483	Frame_Shift_Del	DEL	AG	TCGA-DD-A4NB-01A-12D-A25V-10		1263483	133743033	19	11249											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25380255	25380255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	KRAS,NS,carcinoma,+1	KRAS	NM_004985	exon3	c.G203T	p.R68M	TGGTCCCTCATTG	.	149	32	144	0	.	92875	A	25380255	C	A	25380255	3	1	84	1	0	0	0	0	1	0	0	0	8438	681	24	3	499	3	KRAS	12	25380255	Missense_Mutation	SNP	C	TCGA-DD-A4NB-01A-12D-A25V-10		25380255	108471640	20	11250											
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62547559	62547559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SYT16	NM_031914	exon4	c.A1001G	p.D334G	AACAGGACAGGAC	.	159	39	214	0	.	23	G	62547559	A	G	62547559	3	3	84	1	0	0	0	0	1	0	0	0	15469	275	10	2	1015	2	SYT16	14	62547559	Missense_Mutation	SNP	A	TCGA-DD-A4NB-01A-12D-A25V-10		62547559	44801981	21	11251											
PIGQ	9091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	633549	633549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PIGQ	NM_148920	exon10	c.2198delC	p.T733fs	CGCTGACCCCCGT	.	112	19	93	0	.	226	-	633549	C	-	633549	7	5	84	1	0	1	0	1	0	0	0	0	11896	507	18	0	2298	0	PIGQ	16	633549	Frame_Shift_Del	DEL	C	TCGA-DD-A4NB-01A-12D-A25V-10		633549	89721204	22	11252											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7888162	7888162	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PTPRM	NM_001105244	exon3	c.C255T	p.L85L	CCTGCTCTTACCC	.	147	37	186	0	.	228	T	7888162	C	T	7888162	2	4	84	1	0	0	0	0	0	0	0	1	12806	900	32	3		3	PTPRM	18	7888162	Silent	SNP	C	TCGA-DD-A4NB-01A-12D-A25V-10		7888162	70189086	23	11253											
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9643591	9643591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF426	NM_024106	exon6	c.C255G	p.I85M	TTTGATGATCTGA	.	97	20	96	0	.	91	C	9643591	G	C	9643591	3	2	84	1	0	0	0	0	1	0	0	0	17897	1280	45	4	1421	4	ZNF426	19	9643591	Missense_Mutation	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10		9643591	49485392	24	11254											
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	37643714	37643714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF585A	NM_199126	exon6	c.T922G	p.F308V	AGGTAAAGGCCTT	.	207	45	180	0	.	92	C	37643714	A	C	37643714	3	2	84	1	0	0	0	0	1	0	0	0	18014	72	3	5	1226	5	ZNF585A	19	37643714	Missense_Mutation	SNP	A	TCGA-DD-A4NB-01A-12D-A25V-10	28000123	37643714	21485269	25	11255											
MAP3K10	4294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40698304	40698304	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MAP3K10	NM_002446	exon1	c.G366A	p.V122V	GGAGGTGGCAGTC	.	31	14	38	0	.	981	A	40698304	G	A	40698304	2	1	84	1	0	0	0	0	0	0	0	1	9244	1335	47	3		3	MAP3K10	19	40698304	Silent	SNP	G	TCGA-DD-A4NB-01A-12D-A25V-10	3054590	40698304	18430679	26	11256											
ZNF841	284371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52569235	52569235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_001136499	exon7	c.T1900A	p.F634I	AACTGAAGACCTT	.	220	20	199	0	.	.	T	52569235	A	T	52569235	3	4	84	1	0	0	0	0	1	0	0	0	18186	72	3	4	878	4	ZNF841	19	52569235	Missense_Mutation	SNP	A	TCGA-DD-A4NB-01A-12D-A25V-10	11870931	52569235	6559748	27	11257											
ZNF83	55769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53117500	53117500	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF83	NM_018300	exon3	c.A318G	p.L106L	AAAATGTAAGCCT	.	232	31	219	0	.	91	C	53117500	T	C	53117500	2	2	84	1	0	0	0	0	0	0	0	1	18180	1635	57	2		2	ZNF83	19	53117500	Silent	SNP	T	TCGA-DD-A4NB-01A-12D-A25V-10	548265	53117500	6011483	28	11258											
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46073649	46073649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NASP	NM_002482	exon6	c.G1066T	p.A356S	GCCTCAGCTGTAG	.	339	57	339	0	.	91	T	46073649	G	T	46073649	3	4	85	1	0	0	0	0	1	0	0	0	10172	971	34	3	1165	3	NASP	1	46073649	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		46073649	203176972	1	11259											
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	47904363	47904363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FOXD2	NM_004474	exon1	c.G556C	p.V186L	TGCTTCGTCAAGA	.	268	45	191	0	.	226	C	47904363	G	C	47904363	3	2	85	1	0	0	0	0	1	0	0	0	5997	1145	40	4	558	4	FOXD2	1	47904363	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	1830714	47904363	201346258	2	11260											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109794691	109794691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CELSR2	NM_001408	exon1	c.G1990A	p.G664S	AGTGGTGGTGGGC	.	322	63	374	0	.	526	A	109794691	G	A	109794691	3	1	85	1	0	0	0	0	1	0	0	0	3222	1348	47	3	1992	3	CELSR2	1	109794691	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	61890328	109794691	139455930	3	11261											
SPRR2E	6704	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153066128	153066128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SPRR2E	NM_001024209	exon2	c.G100A	p.E34K	AGGGCTCAGGGCA	.	184	44	179	1	.	69	T	153066128	C	T	153066128	3	4	85	1	0	0	0	0	1	0	0	0	15099	835	29	3	122	3	SPRR2E	1	153066128	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	43271437	153066128	96184493	4	11262											
SEMA4A	64218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156146462	156146462	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SEMA4A	NM_001193300	exon15	c.G1960C	p.A654P	GAACTGGCAGGCA	.	143	34	151	0	.	228	C	156146462	G	C	156146462	3	2	85	1	0	0	0	0	1	0	0	0	14031	1203	42	4	2014	4	SEMA4A	1	156146462	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	3080334	156146462	93104159	5	11263											
OR6N2	81442	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158747373	158747373	+	Missense_Mutation	SNP	G	G	A	rs200003269		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR6N2	NM_001005278	exon1	c.C53T	p.A18V	ACACTGGCAAAGC	.	282	54	322	1	G|0.999;A|0.001	68	A	158747373	G	A	158747373	3	1	85	1	0	0	0	0	1	0	0	0	11207	1203	42	3	903	3	OR6N2	1	158747373	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	2600911	158747373	90503248	6	11264											
ARHGAP25	9938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69049534	69049534	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ARHGAP25	NM_001007231	exon10	c.C1263T	p.D421D	GGAGGACAGCAGC	.	108	9	104	0	.	274	T	69049534	C	T	69049534	2	4	85	1	0	0	0	0	0	0	0	1	874	477	17	3		3	ARHGAP25	2	69049534	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10		69049534	174149839	7	11265											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152506778	152506778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NEB	NM_004543	exon54	c.G7343A	p.R2448H	GGCTGACGATATT	.	215	31	255	1	.	145	T	152506778	C	T	152506778	3	4	85	1	0	0	0	0	1	0	0	0	10302	536	19	1	18859	1	NEB	2	152506778	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	83457244	152506778	90692595	8	11266											
G6PC2	57818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169757874	169757874	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	G6PC2	NM_021176	exon1	c.A33C	p.I11I	GCTCATAATTCAG	.	94	21	80	0	.	91	C	169757874	A	C	169757874	2	2	85	1	0	0	0	0	0	0	0	1	6144	352	13	5		5	G6PC2	2	169757874	Silent	SNP	A	TCGA-DD-A4ND-01A-11D-A25V-10	17251096	169757874	73441499	9	11267											
CHST13	166012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	126255177	126255182	+	In_Frame_Del	DEL	AGCTCT	AGCTCT	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	AGCTCT	AGCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CHST13	NM_152889	exon2	c.161_166del	p.54_56del	TGCAGAAGCTCTA	.	159	17	159	0	.	90	-	126255182	AGCTCT	-	126255177	7	5	85	1	0	1	0	1	0	0	0	0	3401	72	3	0	167	0	CHST13	3	126255177	In_Frame_Del	DEL	AGCTCT	TCGA-DD-A4ND-01A-11D-A25V-10		126255177	71767253	10	11268											
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	142499740	142499740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TRPC1	NM_001251845	exon6	c.C829T	p.R277W	CAAGCCCGGAATT	.	83	4	106	0	.	92	T	142499740	C	T	142499740	3	4	85	1	0	0	0	0	1	0	0	0	16575	643	23	1	745	1	TRPC1	3	142499740	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	16244563	142499740	55522690	11	11269											
GPR171	29909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150916346	150916346	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GPR171	NM_013308	exon3	c.G828T	p.S276S	CAGGTTCGACACA	.	173	22	158	1	.	90	A	150916346	C	A	150916346	2	1	85	1	0	0	0	0	0	0	0	1	6668	871	31	1		1	GPR171	3	150916346	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	8416606	150916346	47106084	12	11270											
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3318591	3318591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RGS12	NM_002926	exon2	c.G694A	p.V232M	ATGATCGTGGGCT	.	199	39	167	0	.	226	A	3318591	G	A	3318591	3	1	85	1	0	0	0	0	1	0	0	0	13295	1145	40	1	696	1	RGS12	4	3318591	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		3318591	187835685	13	11271											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134072907	134072907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PCDH10	NM_032961	exon1	c.G1612A	p.D538N	CTGAAGGACTTCA	.	194	44	193	0	.	92	A	134072907	G	A	134072907	3	1	85	1	0	0	0	0	1	0	0	0	11507	1174	41	3	1614	3	PCDH10	4	134072907	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	130754316	134072907	57081369	14	11272											
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271585	164271585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NPY5R	NM_006174	exon4	c.C160A	p.L54I	AGTCTTCTTGGCT	.	196	33	165	0	.	523	A	164271585	C	A	164271585	3	1	85	1	0	0	0	0	1	0	0	0	10610	913	32	3	162	3	NPY5R	4	164271585	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	30198678	164271585	26882691	15	11273											
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6754921	6754921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PAPD7	NM_006999	exon13	c.G1492A	p.G498S	GGCGGCGGCTACA	.	268	51	210	0	.	69	A	6754921	G	A	6754921	3	1	85	1	0	0	0	0	1	0	0	0	11426	1116	39	1	1538	1	PAPD7	5	6754921	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		6754921	174160339	16	11274											
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72874667	72874667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	UTP15	NM_032175	exon10	c.G1136T	p.R379I	TCGATAGAGTTCT	.	151	47	116	0	.	90	T	72874667	G	T	72874667	3	4	85	1	0	0	0	0	1	0	0	0	17094	942	33	3	1170	3	UTP15	5	72874667	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	66119746	72874667	108040593	17	11275											
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140755726	140755726	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PCDHGA6	NM_018919	exon1	c.C2076T	p.Y692Y	TCTGTACCTGGTG	.	85	21	73	0	.	67	T	140755726	C	T	140755726	2	4	85	1	0	0	0	0	0	0	0	1	11558	518	18	3		3	PCDHGA6	5	140755726	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	67881059	140755726	40159534	18	11276											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76589582	76589582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MYO6	NM_004999	exon21	c.G2123A	p.R708Q	CATCACGAGCTTC	.	240	39	210	0	.	92	A	76589582	G	A	76589582	3	1	85	1	0	0	0	0	1	0	0	0	10081	1058	37	1	2201	1	MYO6	6	76589582	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		76589582	94525485	19	11277											
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	56049254	56049254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GBAS	NM_001483	exon4	c.C367T	p.Q123X	CAGGACCAAGCTG	.	184	64	144	0	.	514	T	56049254	C	T	56049254	4	4	85	1	0	0	0	0	0	1	0	0	6269	595	21	3	381	3	GBAS	7	56049254	Nonsense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10		56049254	103089409	20	11278											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77885584	77885584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAGI2	NM_012301	exon10	c.G1723T	p.D575Y	GACCATCAGTTGG	.	479	161	391	0	.	461	A	77885584	C	A	77885584	3	1	85	1	0	0	0	0	1	0	0	0	9191	826	29	3	2696	3	MAGI2	7	77885584	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	21836330	77885584	81253079	21	11279											
TGS1	96764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56699053	56699053	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TGS1	NM_024831	exon4	c.596delA	p.E199fs	AATGGGAAAAGTA	.	95	39	83	0	.	227	-	56699053	A	-	56699053	7	5	85	1	0	1	0	1	0	0	0	0	15834	246	9	0	610	0	TGS1	8	56699053	Frame_Shift_Del	DEL	A	TCGA-DD-A4ND-01A-11D-A25V-10		56699053	89664969	22	11280											
GLDC	2731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6558589	6558589	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GLDC	NM_000170	exon17	c.G2022T	p.G674G	GATATTCCCATAT	.	132	25	137	0	.	92	A	6558589	C	A	6558589	2	1	85	1	0	0	0	0	0	0	0	1	6433	842	30	3		3	GLDC	9	6558589	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10		6558589	134654842	23	11281											
LRSAM1	90678	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130242224	130242224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LRSAM1	NM_001005373	exon14	c.G1010T	p.S337I	TTTCCAGCCGGAT	.	174	34	176	1	.	90	T	130242224	G	T	130242224	3	4	85	1	0	0	0	0	1	0	0	0	9043	971	34	3	1056	3	LRSAM1	9	130242224	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	123683635	130242224	10971207	24	11282											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6588587	6588587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DNHD1	NM_144666	exon36	c.T11848A	p.S3950T	AAAGCATCAGAGC	.	142	25	132	0	.	24	A	6588587	T	A	6588587	3	1	85	1	0	0	0	0	1	0	0	0	4668	1435	50	4	11991	4	DNHD1	11	6588587	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10		6588587	128417929	25	11283											
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56058048	56058048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR8H1	NM_001005199	exon1	c.G491A	p.R164K	TGCAGTCTGCTCA	.	254	51	158	0	.	71	T	56058048	C	T	56058048	3	4	85	1	0	0	0	0	1	0	0	0	11237	913	32	3	446	3	OR8H1	11	56058048	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	49469461	56058048	78948468	26	11284											
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	67352223	67352223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GSTP1	NM_000852	exon4	c.G212A	p.R71H	TCCTGCGTCACCT	.	533	26	115	0	.	91	A	67352223	G	A	67352223	3	1	85	1	0	0	0	0	1	0	0	0	6844	1145	40	1	226	1	GSTP1	11	67352223	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	11294175	67352223	67654293	27	11285											
ACAT1	38	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108010844	108010844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ACAT1	NM_000019	exon7	c.A632G	p.Q211R	ATGAACAGGACGC	.	104	22	127	0	.	93	G	108010844	A	G	108010844	3	3	85	1	0	0	0	0	1	0	0	0	121	188	7	2	658	2	ACAT1	11	108010844	Missense_Mutation	SNP	A	TCGA-DD-A4ND-01A-11D-A25V-10	40658621	108010844	26995672	28	11286											
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118955777	118955777	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	HMBS	NM_000190	exon1	c.33+1G>A	.	ACGGCGGTGAGTG	.	110	31	135	0	.	90	A	118955777	G	A	118955777	5	1	85	1	0	0	0	0	0	0	1	0	7219	1275	44	3	36	3	HMBS	11	118955777	Splice_Site	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	10944933	118955777	16050739	29	11287											
PARP11	57097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3939151	3939151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PARP11	NM_020367	exon2	c.A52G	p.K18E	TTGTTTTAGAAAA	.	107	19	123	0	.	523	C	3939151	T	C	3939151	3	2	85	1	0	0	0	0	1	0	0	0	11456	1763	61	2	992	2	PARP11	12	3939151	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10		3939151	129912744	30	11288											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40707956	40707956	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LRRK2	NM_198578	exon32	c.T4719G	p.V1573V	CGCAGTTCACTTT	.	197	50	148	0	.	533	G	40707956	T	G	40707956	2	3	85	1	0	0	0	0	0	0	0	1	9033	1770	62	5		5	LRRK2	12	40707956	Silent	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	36768805	40707956	93143939	31	11289											
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53553482	53553482	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CSAD	NM_015989	exon16	c.T1314C	p.N438N	ACACACATTGACA	.	130	41	96	0	.	91	G	53553482	A	G	53553482	2	3	85	1	0	0	0	0	0	0	0	1	3925	214	8	2		2	CSAD	12	53553482	Silent	SNP	A	TCGA-DD-A4ND-01A-11D-A25V-10	12845526	53553482	80298413	32	11290											
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	109879426	109879426	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_001101421	exon25	c.C2497T	p.Q833X	ATGCAGCAAAAGG	.	270	41	207	0	.	.	T	109879426	C	T	109879426	4	4	85	1	0	0	0	0	0	1	0	0	10075	711	25	3	2595	3	MYO1H	12	109879426	Nonsense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	56325944	109879426	23972469	33	11291											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	23912521	23912521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SACS	NM_014363	exon10	c.T5494A	p.F1832I	GGGAAAACTTCAG	.	89	8	91	0	.	298	T	23912521	A	T	23912521	3	4	85	1	0	0	0	0	1	0	0	0	13804	43	2	4	8249	4	SACS	13	23912521	Missense_Mutation	SNP	A	TCGA-DD-A4ND-01A-11D-A25V-10		23912521	91257357	34	11292											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36428640	36428640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DCLK1	NM_004734	exon6	c.A1031C	p.Q344P	ACCCTCTGCTTCC	.	144	30	124	0	.	826	G	36428640	T	G	36428640	3	3	85	1	0	0	0	0	1	0	0	0	4291	1580	55	5	1210	5	DCLK1	13	36428640	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	12516119	36428640	78741238	35	11293											
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76382095	76382095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LMO7	NM_015842	exon7	c.G977A	p.C326Y	TTCTCTGTGTACT	.	52	8	56	0	.	586	A	76382095	G	A	76382095	3	1	85	1	0	0	0	0	1	0	0	0	8855	1377	48	3	1874	3	LMO7	13	76382095	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	39953455	76382095	38787783	36	11294											
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58965663	58965663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIAA0586	NM_001244189	exon29	c.T4312G	p.F1438V	CGGCAATTTGACA	.	148	49	107	0	.	23	G	58965663	T	G	58965663	3	3	85	1	0	0	0	0	1	0	0	0	8186	1493	52	5	4027	5	KIAA0586	14	58965663	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10		58965663	48383877	37	11295											
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73746111	73746111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NUMB	NM_001005743	exon12	c.T1118G	p.F373C	ACATGGAAGGCTG	.	218	33	160	0	.	1062	C	73746111	A	C	73746111	3	2	85	1	0	0	0	0	1	0	0	0	10751	246	9	5	845	5	NUMB	14	73746111	Missense_Mutation	SNP	A	TCGA-DD-A4ND-01A-11D-A25V-10	14780448	73746111	33603429	38	11296											
ZNF410	57862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74364881	74364881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZNF410	NM_001242924	exon6	c.C547T	p.L183F	TGGTTCCTCCGGG	.	198	65	130	2	.	91	T	74364881	C	T	74364881	3	4	85	1	0	0	0	0	1	0	0	0	17887	681	24	3	510	3	ZNF410	14	74364881	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	618770	74364881	32984659	39	11297											
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79748973	79748973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIAA1024	NM_015206	exon2	c.G484T	p.D162Y	AAGATGGACTGCA	.	66	14	85	0	.	183	T	79748973	G	T	79748973	3	4	85	1	0	0	0	0	1	0	0	0	8205	1174	41	3	486	3	KIAA1024	15	79748973	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		79748973	22782419	40	11298											
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91461902	91461902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAN2A2	NM_006122	exon21	c.G3217A	p.A1073T	GAGACCGCACTCA	.	54	10	48	0	.	136	A	91461902	G	A	91461902	3	1	85	1	0	0	0	0	1	0	0	0	9215	1087	38	1	3299	1	MAN2A2	15	91461902	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	11712929	91461902	11069490	41	11299											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72993867	72993867	+	Missense_Mutation	SNP	G	G	A	rs200390317		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZFHX3	NM_006885	exon2	c.C178T	p.R60C	CGAGGCGCTCATT	.	28	9	21	0	G|0.999;A|0.000	72	A	72993867	G	A	72993867	3	1	85	1	0	0	0	0	1	0	0	0	17631	1087	38	1	10969	1	ZFHX3	16	72993867	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		72993867	17360886	42	11300											
USP6	9098	hgsc.bcm.edu;ucsc.edu	37	17	5042895	5042895	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	USP6	NM_004505	exon14	c.G1424A	p.W475X	TTGAATGGAGCTG	.	46	8	29	0	.	662	A	5042895	G	A	5042895	4	1	85	1	0	0	0	0	0	1	0	0	17083	1357	47	3	1474	3	USP6	17	5042895	Nonsense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		5042895	76152315	43	11301											
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33486549	33486549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	UNC45B	NM_001267052	exon8	c.T964A	p.Y322N	ACCATCTATGTGG	.	76	16	71	0	.	157	A	33486549	T	A	33486549	3	1	85	1	0	0	0	0	1	0	0	0	16986	1522	53	4	990	4	UNC45B	17	33486549	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	28443654	33486549	47708661	44	11302											
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37619175	37619175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CDK12	NM_016507	exon1	c.C851T	p.A284V	CTTCGGCCTACCA	.	114	15	105	0	.	1055	T	37619175	C	T	37619175	3	4	85	1	0	0	0	0	1	0	0	0	3128	739	26	3	853	3	CDK12	17	37619175	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	4132626	37619175	43576035	45	11303											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38935981	38935981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KRT27	NM_181537	exon4	c.A817T	p.R273W	CGTCCCTGCGGTT	.	80	17	82	0	.	90	A	38935981	T	A	38935981	3	1	85	1	0	0	0	0	1	0	0	0	8464	1579	55	4	582	4	KRT27	17	38935981	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	1316806	38935981	42259229	46	11304											
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2939526	2939526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LPIN2	NM_014646	exon6	c.A774G	p.S258S	AGACTCTGATCTG	.	59	15	58	0	.	227	C	2939526	T	C	2939526	2	2	85	1	0	0	0	0	0	0	0	1	8919	1567	55	2		2	LPIN2	18	2939526	Silent	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10		2939526	75137722	47	11305											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	28650775	28650775	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DSC2	NM_024422	exon14	c.A2167T	p.K723X	GTTGTTTAGACGT	.	80	13	93	0	.	517	A	28650775	T	A	28650775	4	1	85	1	0	0	0	0	0	1	0	0	4766	1763	61	4	590	4	DSC2	18	28650775	Nonsense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	25711249	28650775	49426473	48	11306											
OR7A5	26659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14938783	14938783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR7A5	NM_017506	exon1	c.G271T	p.V91F	TGATGACTTTGTT	.	171	8	125	0	.	90	A	14938783	C	A	14938783	3	1	85	1	0	0	0	0	1	0	0	0	11216	565	20	3	692	3	OR7A5	19	14938783	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10		14938783	44190200	49	11307											
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14952139	14952139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR7A10	NM_001005190	exon1	c.T551C	p.V184A	TGGACCACCTGAT	.	189	20	169	0	.	68	G	14952139	A	G	14952139	3	3	85	1	0	0	0	0	1	0	0	0	11214	159	6	2	382	2	OR7A10	19	14952139	Missense_Mutation	SNP	A	TCGA-DD-A4ND-01A-11D-A25V-10	13356	14952139	44176844	50	11308											
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20621445	20621445	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RALGAPA2	NM_020343	exon6	c.G450T	p.L150L	AAAAATCAGAACC	.	284	43	222	1	.	24	A	20621445	C	A	20621445	2	1	85	1	0	0	0	0	0	0	0	1	13014	813	29	3		3	RALGAPA2	20	20621445	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10		20621445	42404075	51	11309											
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52198139	52198139	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZNF217	NM_006526	exon1	c.C1227G	p.T409T	AGACATGGTGGGC	.	76	10	58	0	.	723	C	52198139	G	C	52198139	2	2	85	1	0	0	0	0	0	0	0	1	17769	1335	47	4		4	ZNF217	20	52198139	Silent	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	31576694	52198139	10827381	52	11310											
RBM11	54033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15599354	15599354	+	Missense_Mutation	SNP	G	G	T	rs139439630	byfrequency;alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_144770	exon5	c.G586T	p.D196Y	CCAAGTGACTCTG	.	434	89	406	0	G|0.988;A|0.012	.	T	15599354	G	T	15599354	3	4	85	1	0	0	0	0	1	0	0	0	13112	1290	45	3	604	3	RBM11	21	15599354	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		15599354	32530541	53	11311											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37618218	37618218	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DOPEY2	NM_005128	exon19	c.C3940T	p.L1314L	CTGGAGCTGCTCA	.	117	28	101	0	.	91	T	37618218	C	T	37618218	2	4	85	1	0	0	0	0	0	0	0	1	4708	796	28	3		3	DOPEY2	21	37618218	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	22018864	37618218	10511677	54	11312											
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36902221	36902221	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FOXRED2	NM_001102371	exon2	c.G249C	p.K83N	GTACCGCTTGTTG	.	119	33	95	0	.	92	G	36902221	C	G	36902221	3	3	85	1	0	0	0	0	1	0	0	0	6034	796	28	4	1837	4	FOXRED2	22	36902221	Missense_Mutation	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10		36902221	14402345	55	11313											
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41752683	41752683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZC3H7B	NM_017590	exon22	c.G2552C	p.S851T	AGAACAGCAACAG	.	117	10	93	0	.	90	C	41752683	G	C	41752683	3	2	85	1	0	0	0	0	1	0	0	0	17570	971	34	4	2634	4	ZC3H7B	22	41752683	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	4850462	41752683	9551883	56	11314											
ARHGAP6	395	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11162339	11162339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ARHGAP6	NM_006125	exon11	c.C1937T	p.S646F	GAAAAGGAAACTT	.	71	15	99	1	.	227	A	11162339	G	A	11162339	3	1	85	1	0	0	0	0	1	0	0	0	887	1174	41	3	1121	3	ARHGAP6	23	11162339	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10		11162339	144108221	57	11315											
WAS	7454	broad.mit.edu;mdanderson.org	37	X	48547190	48547190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	WAS	NM_000377	exon10	c.G1073T	p.G358V	CCCGGGGACCCCC	.	19	5	17	0	.	563	T	48547190	G	T	48547190	3	4	85	1	0	0	0	0	1	0	0	0	17248	1174	41	3	1111	3	WAS	23	48547190	Missense_Mutation	SNP	G	TCGA-DD-A4ND-01A-11D-A25V-10	37384851	48547190	106723370	58	11316											
SYP	6855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49049852	49049852	+	Silent	SNP	C	C	A	rs140804164	alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SYP	NM_003179	exon5	c.G492T	p.L164L	ATCTGACAGCCCC	.	271	43	298	0	C|1.000;T|0.000	556	A	49049852	C	A	49049852	2	1	85	1	0	0	0	0	0	0	0	1	15458	465	17	3		3	SYP	23	49049852	Silent	SNP	C	TCGA-DD-A4ND-01A-11D-A25V-10	502662	49049852	106220708	59	11317											
P2RY4	5030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69478612	69478612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	P2RY4	NM_002565	exon1	c.A863G	p.Y288C	ACTTTATAGACCA	.	431	95	474	0	.	540	C	69478612	T	C	69478612	3	2	85	1	0	0	0	0	1	0	0	0	11353	1406	49	2	238	2	P2RY4	23	69478612	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	20428760	69478612	85791948	60	11318											
RNF113A	7737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119005302	119005302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RNF113A	NM_006978	exon1	c.A275T	p.E92V	TCGGGCTCATTTT	.	167	10	178	0	.	129	A	119005302	T	A	119005302	3	1	85	1	0	0	0	0	1	0	0	0	13427	1551	54	4	760	4	RNF113A	23	119005302	Missense_Mutation	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	49526690	119005302	36265258	61	11319											
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135309506	135309506	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAP7D3	NM_024597	exon12	c.A1971G	p.Q657Q	ATTTTGTTGCTGC	.	283	46	251	0	.	110	C	135309506	T	C	135309506	2	2	85	1	0	0	0	0	0	0	0	1	9269	1722	60	2		2	MAP7D3	23	135309506	Silent	SNP	T	TCGA-DD-A4ND-01A-11D-A25V-10	16304204	135309506	19961054	62	11320											
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	6257754	6257754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	RPL22	NM_000983	exon2	c.C75A	p.C25X	GTGGGTGCAATCA	.	57	36	42	0	.	650	T	6257754	G	T	6257754	4	4	86	1	0	0	0	0	0	1	0	0	13568	1311	46	3	323	3	RPL22	1	6257754	Nonsense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10		6257754	242992867	1	11321											
THAP3	90326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6688628	6688628	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	THAP3	NM_001195752	exon2	c.C144T	p.P48P	CAAGCCCAAGCAG	.	188	84	116	0	.	514	T	6688628	C	T	6688628	2	4	86	1	0	0	0	0	0	0	0	1	15842	581	21	3		3	THAP3	1	6688628	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	430874	6688628	242561993	2	11322											
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151688481	151688481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CELF3	NM_007185	exon1	c.G16C	p.A6P	TGATGGCATCCGG	.	122	53	58	0	.	91	G	151688481	C	G	151688481	3	3	86	1	0	0	0	0	1	0	0	0	3217	710	25	4	1437	4	CELF3	1	151688481	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	144999853	151688481	97562140	3	11323											
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	170508682	170508682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GORAB	NM_152281	exon2	c.C468A	p.C156X	AGATTGCAAATTG	.	139	31	54	0	.	90	A	170508682	C	A	170508682	4	1	86	1	0	0	0	0	0	1	0	0	6574	718	25	3	474	3	GORAB	1	170508682	Nonsense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	18820201	170508682	78741939	4	11324											
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175105078	175105078	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	TNN	NM_022093	exon16	c.3427+1G>C	.	GGCTTGGTATGAT	.	191	41	61	0	.	138	C	175105078	G	C	175105078	5	2	86	1	0	0	0	0	0	0	1	0	16320	1275	44	4	3486	4	TNN	1	175105078	Splice_Site	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	4596396	175105078	74145543	5	11325											
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17954051	17954051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GEN1	NM_182625	exon8	c.A953G	p.K318R	TTAAGAAGTAAGT	.	63	31	82	0	.	359	G	17954051	A	G	17954051	3	3	86	1	0	0	0	0	1	0	0	0	6335	86	3	2	979	2	GEN1	2	17954051	Missense_Mutation	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10		17954051	225245322	6	11326											
SPAST	6683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32341263	32341263	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SPAST	NM_014946	exon7	c.T1080C	p.L360L	TATTCTTCCTTCT	.	54	21	68	0	.	153	C	32341263	T	C	32341263	2	2	86	1	0	0	0	0	0	0	0	1	14996	1770	62	2		2	SPAST	2	32341263	Silent	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10	14387212	32341263	210858110	7	11327											
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36982183	36982183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	VIT	NM_001177969	exon5	c.C395T	p.S132F	GAGAATCCTTTAT	.	244	87	202	0	.	92	T	36982183	C	T	36982183	3	4	86	1	0	0	0	0	1	0	0	0	17168	855	30	3	409	3	VIT	2	36982183	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	4640920	36982183	206217190	8	11328											
CNGA3	1261	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99012481	99012481	+	Missense_Mutation	SNP	G	G	T	rs104893614	bycluster;alternate_allele	TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CNGA3	NM_001298	exon8	c.G848T	p.R283L	TTTCCCGGCTCTT	.	238	125	180	1	G|1.000;A|0.000	96	T	99012481	G	T	99012481	3	4	86	1	0	0	0	0	1	0	0	0	3598	1116	39	1	874	1	CNGA3	2	99012481	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	62030298	99012481	144186892	9	11329											
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120005536	120005536	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	STEAP3	NM_182915	exon4	c.A804T	p.T268T	CACCACACTGCCG	.	57	27	43	0	.	91	T	120005536	A	T	120005536	2	4	86	1	0	0	0	0	0	0	0	1	15278	146	6	4		4	STEAP3	2	120005536	Silent	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10	20993055	120005536	123193837	10	11330											
LRP1B	53353	broad.mit.edu;bcgsc.ca	37	2	141747101	141747101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	LRP1B	NM_018557	exon17	c.G2770C	p.A924P	CTTTACCTGTGCA	.	77	31	42	1	.	311	G	141747101	C	G	141747101	3	3	86	1	0	0	0	0	1	0	0	0	8955	695	24	4	11329	4	LRP1B	2	141747101	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	21741565	141747101	101452272	11	11331											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160807872	160807872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	PLA2R1	NM_001195641	exon24	c.G3519T	p.W1173C	TCCAATCCAGTGG	.	200	86	182	0	.	93	A	160807872	C	A	160807872	3	1	86	1	0	0	0	0	1	0	0	0	12010	856	30	3	908	3	PLA2R1	2	160807872	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	19060771	160807872	82391501	12	11332											
GRM7	2917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	7620178	7620178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GRM7	NM_000844	exon8	c.C1585T	p.P529S	TGTAAGCCAGGAC	.	240	88	154	2	.	526	T	7620178	C	T	7620178	3	4	86	1	0	0	0	0	1	0	0	0	6802	739	26	3	1615	3	GRM7	3	7620178	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10		7620178	190402252	13	11333											
ZNF385D	79750	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	21467010	21467010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ZNF385D	NM_024697	exon6	c.G826A	p.V276I	AGTTGACGTGCAC	.	215	69	173	1	.	156	T	21467010	C	T	21467010	3	4	86	1	0	0	0	0	1	0	0	0	17875	536	19	1	373	1	ZNF385D	3	21467010	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	13846832	21467010	176555420	14	11334											
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38168072	38168072	+	Missense_Mutation	SNP	C	C	T	rs115896366		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ACAA1	NM_001607	exon8	c.G746A	p.R249H	CTGGGGCGGATAC	.	227	103	167	0	C|1.000;T|0.000	91	T	38168072	C	T	38168072	3	4	86	1	0	0	0	0	1	0	0	0	104	768	27	1	548	1	ACAA1	3	38168072	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	16701062	38168072	159854358	15	11335											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57475398	57475398	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	DNAH12	NM_178504	exon12	c.T1352A	p.L451H	AGACTGAGAAATT	.	49	18	39	0	.	47	T	57475398	A	T	57475398	3	4	86	1	0	0	0	0	1	0	0	0	4600	304	11	4	8118	4	DNAH12	3	57475398	Missense_Mutation	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10	19307326	57475398	140547032	16	11336											
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157820590	157820590	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SHOX2	NM_003030	exon3	c.G504C	p.R168R	ATTGGTCCGACTT	.	225	110	178	0	.	90	G	157820590	C	G	157820590	2	3	86	1	0	0	0	0	0	0	0	1	14289	842	30	4		4	SHOX2	3	157820590	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	100345192	157820590	40201840	17	11337											
PIK3CA	5290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178952100	178952100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	PIK3CA,NS,carcinoma,0	PIK3CA	NM_006218	exon21	c.C3155A	p.T1052K	GCTGGACAACAAA	.	71	30	102	2	.	27752	A	178952100	C	A	178952100	3	1	86	1	0	0	0	0	1	0	0	0	11913	478	17	3	3233	3	PIK3CA	3	178952100	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	21131510	178952100	19070330	18	11338											
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185332412	185332412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SENP2	NM_021627	exon11	c.G994C	p.G332R	CGCCTGGGCAGTG	.	225	91	150	0	.	658	C	185332412	G	C	185332412	3	2	86	1	0	0	0	0	1	0	0	0	14047	1232	43	4	1036	4	SENP2	3	185332412	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	6380312	185332412	12690018	19	11339											
LCORL	254251	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	17886148	17886148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	LCORL	NM_001166139	exon7	c.C1004T	p.S335L	TTATATGAATAAC	.	67	15	55	0	.	90	A	17886148	G	A	17886148	3	1	86	1	0	0	0	0	1	0	0	0	8690	1294	45	3	993	3	LCORL	4	17886148	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10		17886148	173268128	20	11340											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57244474	57244474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	AASDH	NM_181806	exon4	c.A508C	p.I170L	AACTTATGCTTTT	.	108	46	109	0	.	94	G	57244474	T	G	57244474	3	3	86	1	0	0	0	0	1	0	0	0	22	1464	51	5	2836	5	AASDH	4	57244474	Missense_Mutation	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10	39358326	57244474	133909802	21	11341											
HMGCS1	3157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43297200	43297200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	HMGCS1	NM_001098272	exon5	c.A643G	p.I215V	CTACTATAGGATA	.	121	54	91	0	.	90	C	43297200	T	C	43297200	3	2	86	1	0	0	0	0	1	0	0	0	7232	1406	49	2	947	2	HMGCS1	5	43297200	Missense_Mutation	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10		43297200	137618060	22	11342											
ACOT12	134526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80628350	80628350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ACOT12	NM_130767	exon13	c.A1337G	p.D446G	GGTTTGTCATCAT	.	100	42	76	0	.	92	C	80628350	T	C	80628350	3	2	86	1	0	0	0	0	1	0	0	0	150	1667	58	2	342	2	ACOT12	5	80628350	Missense_Mutation	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10	37331150	80628350	100286910	23	11343											
SLCO6A1	133482	ucsc.edu;bcgsc.ca	37	5	101795411	101795411	+	Missense_Mutation	SNP	C	C	T	rs140682140	byfrequency	TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SLCO6A1	NM_173488	exon5	c.G970A	p.V324I	ATGCAACGACAGC	.	309	116	242	1	C|0.994;T|0.006	96	T	101795411	C	T	101795411	3	4	86	1	0	0	0	0	1	0	0	0	14732	536	19	1	1225	1	SLCO6A1	5	101795411	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	21167061	101795411	79119849	24	11344											
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111643179	111643179	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	EPB41L4A	NM_022140	exon2	c.G108C	p.T36T	ACCTTTCGTTGAC	.	102	47	72	0	.	91	G	111643179	C	G	111643179	2	3	86	1	0	0	0	0	0	0	0	1	5155	871	31	4		4	EPB41L4A	5	111643179	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	9847768	111643179	69272081	25	11345											
CEP120	153241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	122722352	122722353	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CEP120	NM_153223	exon11	c.1439_1440del	p.480_480del	GAATGGATATGAG	.	66	29	58	0	.	91	-	122722353	AT	-	122722352	7	5	86	1	0	1	0	1	0	0	0	0	3246	340	12	0	1564	0	CEP120	5	122722352	Frame_Shift_Del	DEL	AT	TCGA-DD-A4NE-01A-11D-A27I-10	11079173	122722352	58192908	26	11346											
GRM6	2916	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	178408750	178408750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GRM6	NM_000843	exon10	c.G2542T	p.E848X	TCTGCTCTGGATG	.	234	101	98	1	.	588	A	178408750	C	A	178408750	4	1	86	1	0	0	0	0	0	1	0	0	6801	922	32	3	95	3	GRM6	5	178408750	Nonsense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	55686398	178408750	2506510	27	11347											
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36652323	36652323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CDKN1A	NM_001220778	exon2	c.G445C	p.D149H	ATGACAGGTGCGG	.	154	116	55	0	.	872	C	36652323	G	C	36652323	3	2	86	1	0	0	0	0	1	0	0	0	3158	1014	35	4	447	4	CDKN1A	6	36652323	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10		36652323	134462744	28	11348											
PRDM13	59336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	100062539	100062539	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	PRDM13	NM_021620	exon4	c.T2028C	p.P676P	GGAGCCTGGGGAT	.	28	6	32	0	.	135	C	100062539	T	C	100062539	2	2	86	1	0	0	0	0	0	0	0	1	12454	1567	55	2		2	PRDM13	6	100062539	Silent	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10	63410216	100062539	71052528	29	11349											
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159206580	159206580	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	EZR	NM_003379	exon4	c.C228A	p.L76L	GAACTGGAGGGGA	.	202	78	128	0	.	70	T	159206580	G	T	159206580	2	4	86	1	0	0	0	0	0	0	0	1	5335	1161	41	3		3	EZR	6	159206580	Silent	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	59144041	159206580	11908487	30	11350											
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	4014121	4014121	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SDK1	NM_152744	exon13	c.C1938T	p.S646S	CTACAGCTGCGAG	.	260	123	195	2	.	138	T	4014121	C	T	4014121	2	4	86	1	0	0	0	0	0	0	0	1	13968	796	28	3		3	SDK1	7	4014121	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10		4014121	155124542	31	11351											
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112723996	112723996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GPR85	NM_001146265	exon3	c.C781A	p.Q261K	CATTTTGCCTGAT	.	97	20	82	0	.	91	T	112723996	G	T	112723996	3	4	86	1	0	0	0	0	1	0	0	0	6715	1328	46	3	335	3	GPR85	7	112723996	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	108709875	112723996	46414667	32	11352											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138602612	138602612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	KIAA1549	NM_020910	exon2	c.G1760T	p.S587I	AAAACACTCGGGT	.	129	61	104	0	.	369	A	138602612	C	A	138602612	3	1	86	1	0	0	0	0	1	0	0	0	8244	565	20	3	4168	3	KIAA1549	7	138602612	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	25878616	138602612	20536051	33	11353											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61749438	61749438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CHD7	NM_017780	exon17	c.G4052A	p.R1351K	TCGACAGATTCTC	.	144	62	99	0	.	141	A	61749438	G	A	61749438	3	1	86	1	0	0	0	0	1	0	0	0	3330	942	33	3	4114	3	CHD7	8	61749438	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10		61749438	84614584	34	11354											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77618153	77618153	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ZFHX4	NM_024721	exon2	c.C1830T	p.G610G	ACCGGGCAGTGGC	.	110	60	92	0	.	98	T	77618153	C	T	77618153	2	4	86	1	0	0	0	0	0	0	0	1	17632	697	25	3		3	ZFHX4	8	77618153	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	15868715	77618153	68745869	35	11355											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17026254	17026254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CUBN	NM_001081	exon30	c.T4375C	p.S1459P	TGGGAGAGTGGAA	.	122	45	89	0	.	166	G	17026254	A	G	17026254	3	3	86	1	0	0	0	0	1	0	0	0	4051	304	11	2	6648	2	CUBN	10	17026254	Missense_Mutation	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10		17026254	118508493	36	11356											
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22700061	22700070	+	Frame_Shift_Del	DEL	ATACATCAAC	ATACATCAAC	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	ATACATCAAC	ATACATCAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SPAG6	NM_012443	exon10	c.1416_1425del	p.472_475del	TCAAGAATACATC	.	60	17	76	0	.	153	-	22700070	ATACATCAAC	-	22700061	7	5	86	1	0	1	0	1	0	0	0	0	14982	98	4	0	1454	0	SPAG6	10	22700061	Frame_Shift_Del	DEL	ATACATCAAC	TCGA-DD-A4NE-01A-11D-A27I-10	5673807	22700061	112834686	37	11357											
MYOZ1	58529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75391726	75391726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	MYOZ1	NM_021245	exon6	c.A862G	p.I288V	TGCCAATATCCAC	.	166	7	115	0	.	92	C	75391726	T	C	75391726	3	2	86	1	0	0	0	0	1	0	0	0	10095	1406	49	2	41	2	MYOZ1	10	75391726	Missense_Mutation	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10	52691665	75391726	60143021	38	11358											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89717712	89717712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	PTEN,leg,malignant_melanoma,0	PTEN	NM_000314	exon7	c.C737G	p.P246R	CTCAGCCGTTACC	.	139	110	193	0	.	17735	G	89717712	C	G	89717712	3	3	86	1	0	0	0	0	1	0	0	0	12738	652	23	4	763	4	PTEN	10	89717712	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	14325986	89717712	45817035	39	11359											
TLL2	7093	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98144387	98144387	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	TLL2	NM_012465	exon16	c.C2151T	p.D717D	GGTGTTGTCGGAC	.	111	46	130	2	.	93	A	98144387	G	A	98144387	2	1	86	1	0	0	0	0	0	0	0	1	15943	1368	48	3		3	TLL2	10	98144387	Silent	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	8426675	98144387	37390360	40	11360											
LRRC4C	57689	ucsc.edu;bcgsc.ca	37	11	40136444	40136444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	LRRC4C	NM_001258419	exon7	c.G1399A	p.D467N	CCTCATCCTGAGA	.	338	98	171	2	.	521	T	40136444	C	T	40136444	3	4	86	1	0	0	0	0	1	0	0	0	9008	855	30	3	527	3	LRRC4C	11	40136444	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10		40136444	94870072	41	11361											
OR4C6	219432	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55433208	55433208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	OR4C6	NM_001004704	exon1	c.A566G	p.D189G	GCACGGACACCCA	.	123	40	67	1	.	70	G	55433208	A	G	55433208	3	3	86	1	0	0	0	0	1	0	0	0	11052	275	10	2	568	2	OR4C6	11	55433208	Missense_Mutation	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10	15296764	55433208	79573308	42	11362											
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56237770	56237770	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	OR5M3	NM_001004742	exon1	c.T204C	p.D68D	CCACACATCAACA	.	435	67	247	0	.	70	G	56237770	A	G	56237770	2	3	86	1	0	0	0	0	0	0	0	1	11175	214	8	2		2	OR5M3	11	56237770	Silent	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10	804562	56237770	78768746	43	11363											
GLYAT	10249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58491955	58491955	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GLYAT	NM_005838	exon2	c.G15A	p.L5L	ACCTTGCAATGGT	.	76	21	27	0	.	90	T	58491955	C	T	58491955	2	4	86	1	0	0	0	0	0	0	0	1	6479	709	25	3		3	GLYAT	11	58491955	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	2254185	58491955	76514561	44	11364											
SSH3	54961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67077629	67077629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SSH3	NM_017857	exon13	c.C1502T	p.P501L	CTCTTCCGCCAGA	.	120	38	53	0	.	91	T	67077629	C	T	67077629	3	4	86	1	0	0	0	0	1	0	0	0	15185	652	23	1	1552	1	SSH3	11	67077629	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	8585674	67077629	67928887	45	11365											
OR10S1	219873	broad.mit.edu;bcgsc.ca	37	11	123847554	123847554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	OR10S1	NM_001004474	exon1	c.G845A	p.G282E	CCAGCTCCTGCCT	.	49	5	46	1	.	70	T	123847554	C	T	123847554	3	4	86	1	0	0	0	0	1	0	0	0	10918	855	30	3	154	3	OR10S1	11	123847554	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	56769925	123847554	11158962	46	11366											
CD4	920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6927621	6927621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CD4	NM_000616	exon8	c.G1191T	p.M397I	GCCAATGGCCCTG	.	44	26	43	0	.	90	T	6927621	G	T	6927621	3	4	86	1	0	0	0	0	1	0	0	0	3014	1348	47	3	1217	3	CD4	12	6927621	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10		6927621	126924274	47	11367											
C12orf68	387856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	48577984	48577984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	C12orf68	NM_001013635	exon1	c.G79C	p.A27P	GTGCCGGCAGTGG	.	15	6	23	0	.	90	C	48577984	G	C	48577984	3	2	86	1	0	0	0	0	1	0	0	0	1710	1203	42	4	81	4	C12orf68	12	48577984	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	41650363	48577984	85273911	48	11368											
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123055417	123055429	+	Frame_Shift_Del	DEL	TTTCAGATAATTC	TTTCAGATAATTC	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	TTTCAGATAATTC	TTTCAGATAATTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	KNTC1	NM_014708	exon23	c.1861_1867del	p.621_623del	AATCTATTTCAGA	.	65	16	99	0	.	543	-	123055429	TTTCAGATAATTC	-	123055417	7	5	86	1	0	1	0	1	0	0	0	0	8428	1508	52	0		0	KNTC1	12	123055417	Frame_Shift_Del	DEL	TTTCAGATAATTC	TCGA-DD-A4NE-01A-11D-A27I-10	74477433	123055417	10796478	49	11369											
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26145823	26145823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ATP8A2	NM_016529	exon18	c.T1655C	p.I552T	TCATCATAGAAGC	.	63	28	69	0	.	138	C	26145823	T	C	26145823	3	2	86	1	0	0	0	0	1	0	0	0	1193	1406	49	2	1725	2	ATP8A2	13	26145823	Missense_Mutation	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10		26145823	89024055	50	11370											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48919320	48919321	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	RB1,retina,retinoblastoma,+1	RB1	NM_000321	exon4	c.485_486insA	p.F162fs	CACTCTTCAGCAA	.	32	26	40	0	.	3784	A	48919321	-	A	48919320	7	5	86	1	0	1	1	0	0	0	0	0	13098	1783	62	0	499	0	RB1	13	48919320	Frame_Shift_Ins	INS	-	TCGA-DD-A4NE-01A-11D-A27I-10	22773497	48919320	66250558	51	11371											
CTSG	1511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	25044580	25044580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CTSG	NM_001911	exon2	c.94delC	p.R32fs	AGGGGCGGGAGTG	.	73	34	38	0	.	92	-	25044580	G	-	25044580	7	5	86	1	0	1	0	1	0	0	0	0	4035	1116	39	0	689	0	CTSG	14	25044580	Frame_Shift_Del	DEL	G	TCGA-DD-A4NE-01A-11D-A27I-10		25044580	82304960	52	11372											
SEPHS2	22928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30456131	30456131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SEPHS2	.	.	.	.	TGTGTGCATTAAA	.	181	82	125	0	.	138	T	30456131	C	T	30456131	3	4	86	1	0	0	0	0	1	0	0	0	14055	710	25	3	432	3	SEPHS2	16	30456131	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10		30456131	59898622	53	11373											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10304673	10304673	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	MYH8	NM_002472	exon24	c.C3027T	p.T1009T	ATCCAGGGTCTGC	.	111	51	80	0	.	101	A	10304673	G	A	10304673	2	1	86	1	0	0	0	0	0	0	0	1	10041	1219	43	3		3	MYH8	17	10304673	Silent	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10		10304673	70890537	54	11374											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	10352333	10352333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	MYH4	NM_017533	exon31	c.G4213T	p.E1405X	GTTCTTCTGCATC	.	75	24	55	0	.	102	A	10352333	C	A	10352333	4	1	86	1	0	0	0	0	0	1	0	0	10037	922	32	3	1646	3	MYH4	17	10352333	Nonsense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	47660	10352333	70842877	55	11375											
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45361990	45361990	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ITGB3	NM_000212	exon4	c.A543G	p.A181A	CGGGGCATTTGTG	.	136	49	122	0	.	714	G	45361990	A	G	45361990	2	3	86	1	0	0	0	0	0	0	0	1	7895	204	8	2		2	ITGB3	17	45361990	Silent	SNP	A	TCGA-DD-A4NE-01A-11D-A27I-10	35009657	45361990	35833220	56	11376											
DDX5	1655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62496261	62496261	+	Missense_Mutation	SNP	T	T	C	rs200823006		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	DDX5	NM_004396	exon13	c.A1625G	p.N542S	CTCCCATTGGTGT	.	128	40	110	0	T|0.999;C|0.000	228	C	62496261	T	C	62496261	3	2	86	1	0	0	0	0	1	0	0	0	4367	1493	52	2	223	2	DDX5	17	62496261	Missense_Mutation	SNP	T	TCGA-DD-A4NE-01A-11D-A27I-10	17134271	62496261	18698949	57	11377											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10286294	10286295	+	Splice_Site	DNP	GC	GC	AA	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	.	.	.	.	.	GGCAGGGCTGTCA	.	158	62	94	0	.	.	AA	10286295	GC	AA	10286294	5	1	86	1	0	0	0	0	0	0	1	0	4675	1217	42	3	4468	3	DNMT1	19	10286294	Splice_Site	DNP	GC	TCGA-DD-A4NE-01A-11D-A27I-10		10286294	48842689	58	11378											
ZSWIM4	65249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13936368	13936368	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ZSWIM4	NM_023072	exon11	c.C1869T	p.D623D	AGGAGACCCCAAG	.	112	55	73	0	.	90	T	13936368	C	T	13936368	2	4	86	1	0	0	0	0	0	0	0	1	18240	506	18	3		3	ZSWIM4	19	13936368	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	3650074	13936368	45192615	59	11379											
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17758169	17758169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	UNC13A	NM_001080421	exon16	c.C1949T	p.A650V	GTCACCGCGAAGA	.	106	59	77	0	.	25	A	17758169	G	A	17758169	3	1	86	1	0	0	0	0	1	0	0	0	16981	1087	38	1	3270	1	UNC13A	19	17758169	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	3821801	17758169	41370814	60	11380											
ADNP	23394	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49509730	49509730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ADNP	NM_015339	exon5	c.G1521A	p.M507I	AATTAACATATGG	.	229	73	164	2	.	92	T	49509730	C	T	49509730	3	4	86	1	0	0	0	0	1	0	0	0	323	478	17	3	1791	3	ADNP	20	49509730	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10		49509730	13515790	61	11381											
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62324187	62324187	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	RTEL1	NM_032957	exon29	c.C2754T	p.D918D	GACGGACAGGGCC	.	86	44	65	0	.	44	T	62324187	C	T	62324187	2	4	86	1	0	0	0	0	0	0	0	1	13720	477	17	3		3	RTEL1	20	62324187	Silent	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10	12814457	62324187	701333	62	11382											
CLTCL1	8218	ucsc.edu;bcgsc.ca	37	22	19220768	19220768	+	Missense_Mutation	SNP	C	C	G	rs116398959	alternate_allele	TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CLTCL1	NM_001835	exon9	c.G1442C	p.R481P	TTTGCCCGAAGGT	.	185	81	93	1	C|0.996;T|0.004	230	G	19220768	C	G	19220768	3	3	86	1	0	0	0	0	1	0	0	0	3567	652	23	4	3576	4	CLTCL1	22	19220768	Missense_Mutation	SNP	C	TCGA-DD-A4NE-01A-11D-A27I-10		19220768	32083798	63	11383											
NCF4	4689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37271708	37271708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	NCF4	NM_000631	exon8	c.G641C	p.G214A	TCCGGGGAGCCAC	.	41	20	36	0	.	91	C	37271708	G	C	37271708	3	2	86	1	0	0	0	0	1	0	0	0	10218	1174	41	4	671	4	NCF4	22	37271708	Missense_Mutation	SNP	G	TCGA-DD-A4NE-01A-11D-A27I-10	18050940	37271708	14032858	64	11384											
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu	37	1	11008624	11008624	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf127	NM_001170754	exon12	c.1568delC	p.P523fs	GGCCTCGGGGCTG	.	131	10	170	0	.	91	-	11008624	G	-	11008624	7	5	87	1	0	1	0	1	0	0	0	0	1994	1116	39	0	907	0	C1orf127	1	11008624	Frame_Shift_Del	DEL	G	TCGA-DD-A4NF-01A-11D-A27I-10		11008624	238241997	1	11385											
IPO13	9670	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44424562	44424562	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	IPO13	NM_014652	exon11	c.2028+1G>A	.	AACCCCGTGGGTG	.	130	45	192	2	.	226	A	44424562	G	A	44424562	5	1	87	1	0	0	0	0	0	0	1	0	7794	1159	40	1	2071	1	IPO13	1	44424562	Splice_Site	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	33415938	44424562	204826059	2	11386											
C1orf168	199920	ucsc.edu;bcgsc.ca	37	1	57258345	57258345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf168	NM_001004303	exon2	c.A141T	p.Q47H	CAAAATTTGAGTT	.	143	48	200	2	.	95	A	57258345	T	A	57258345	3	1	87	1	0	0	0	0	1	0	0	0	2012	1838	64	4	2121	4	C1orf168	1	57258345	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	12833783	57258345	191992276	3	11387											
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68910330	68910330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RPE65	NM_000329	exon5	c.G379A	p.E127K	TAACCTCTACTCC	.	73	22	119	0	.	91	T	68910330	C	T	68910330	3	4	87	1	0	0	0	0	1	0	0	0	13545	922	32	3	1262	3	RPE65	1	68910330	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	11651985	68910330	180340291	4	11388											
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110560140	110560140	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	AHCYL1	NM_006621	exon10	c.T987A	p.A329A	TGCTGCTCTCAAA	.	92	28	152	0	.	91	A	110560140	T	A	110560140	2	1	87	1	0	0	0	0	0	0	0	1	410	1538	54	4		4	AHCYL1	1	110560140	Silent	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	41649810	110560140	138690481	5	11389											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158604337	158604337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTA1	NM_003126	exon39	c.C5561T	p.T1854I	ACCTGAGTAGCAG	.	134	56	125	0	.	142	A	158604337	G	A	158604337	3	1	87	1	0	0	0	0	1	0	0	0	15115	1029	36	3	1754	3	SPTA1	1	158604337	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	48044197	158604337	90646284	6	11390											
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158746653	158746653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR6N2	NM_001005278	exon1	c.T773A	p.M258K	ACATACATGAAGA	.	507	132	337	0	.	68	T	158746653	A	T	158746653	3	4	87	1	0	0	0	0	1	0	0	0	11207	217	8	4	183	4	OR6N2	1	158746653	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	142316	158746653	90503968	7	11391											
CASQ1	844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160165717	160165717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CASQ1,brain,glioma,-1	CASQ1	NM_001231	exon6	c.G682A	p.E228K	CTGAATGAGATTG	.	177	27	135	0	.	90	A	160165717	G	A	160165717	3	1	87	1	0	0	0	0	1	0	0	0	2680	1291	45	3	704	3	CASQ1	1	160165717	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	1419064	160165717	89084904	8	11392											
RXRG	6258	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	165386378	165386378	+	Silent	SNP	C	C	A	rs200365240	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RXRG	NM_006917	exon4	c.G522T	p.T174T	CCGACACGTGTAG	.	452	91	340	1	C|0.999;T|0.001	186	A	165386378	C	A	165386378	2	1	87	1	0	0	0	0	0	0	0	1	13765	523	19	1		1	RXRG	1	165386378	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	5220661	165386378	83864243	9	11393											
CRB1	23418	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197316508	197316508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRB1	NM_001257966	exon4	c.C887T	p.T296I	CAGGGACACACTG	.	243	41	162	2	.	161	T	197316508	C	T	197316508	3	4	87	1	0	0	0	0	1	0	0	0	3848	478	17	3	901	3	CRB1	1	197316508	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	31930130	197316508	51934113	10	11394											
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201282409	201282409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKP1	NM_001005337	exon3	c.G422T	p.G141V	GCGCAGGCAGCGA	.	328	137	265	1	.	92	T	201282409	G	T	201282409	3	4	87	1	0	0	0	0	1	0	0	0	11984	1203	42	3	432	3	PKP1	1	201282409	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	3965901	201282409	47968212	11	11395											
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207940538	207940538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CD46	NM_172352	exon6	c.A854C	p.K285T	GTCTTAAAGGTAC	.	325	137	239	0	.	963	C	207940538	A	C	207940538	3	2	87	1	0	0	0	0	1	0	0	0	3018	14	1	5	876	5	CD46	1	207940538	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	6658129	207940538	41310083	12	11396											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225594411	225594411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LBR	NM_194442	exon11	c.A1438T	p.N480Y	CTTCATTTGGATG	.	294	123	205	0	.	228	A	225594411	T	A	225594411	3	1	87	1	0	0	0	0	1	0	0	0	8652	1841	64	4	425	4	LBR	1	225594411	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	17653873	225594411	23656210	13	11397											
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228451986	228451986	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OBSCN	NM_001271223	exon18	c.G5307T	p.V1769V	GGCCGTGGGCTGC	.	161	86	138	0	.	403	T	228451986	G	T	228451986	2	4	87	1	0	0	0	0	0	0	0	1	10812	1335	47	3		3	OBSCN	1	228451986	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	2857575	228451986	20798635	14	11398											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228467000	228467000	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OBSCN	NM_001271223	exon32	c.G8538T	p.T2846T	GAAGACGGTGTTG	.	182	37	158	0	.	403	T	228467000	G	T	228467000	2	4	87	1	0	0	0	0	0	0	0	1	10812	1103	39	1		1	OBSCN	1	228467000	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	15014	228467000	20783621	15	11399											
OR2T6	254879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248551789	248551789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T6	NM_001005471	exon1	c.A880G	p.N294D	CTGAGGAACAGGG	.	397	76	374	2	.	71	G	248551789	A	G	248551789	3	3	87	1	0	0	0	0	1	0	0	0	11029	246	9	2	882	2	OR2T6	1	248551789	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	20084789	248551789	698832	16	11400											
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248737387	248737387	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T34	NM_001001821	exon1	c.C672G	p.T224T	GATGAGGGTGTAT	.	703	164	576	1	.	69	C	248737387	G	C	248737387	2	2	87	1	0	0	0	0	0	0	0	1	11025	1219	43	4		4	OR2T34	1	248737387	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	185598	248737387	513234	17	11401											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37256043	37256043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HEATR5B	NM_019024	exon23	c.G3382A	p.G1128R	TAACCCCAGGGGC	.	109	53	118	0	.	142	T	37256043	C	T	37256043	3	4	87	1	0	0	0	0	1	0	0	0	7032	594	21	3	2889	3	HEATR5B	2	37256043	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10		37256043	205943330	18	11402											
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43980783	43980783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLEKHH2	NM_172069	exon25	c.G3679A	p.G1227R	GCTCGTGGAGAGA	.	134	49	164	0	.	92	A	43980783	G	A	43980783	3	1	87	1	0	0	0	0	1	0	0	0	12077	1349	47	3	3773	3	PLEKHH2	2	43980783	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	6724740	43980783	199218590	19	11403											
GPR148	344561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131486786	131486786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GPR148	NM_207364	exon1	c.T62A	p.L21H	TCCAGCTCATCAG	.	317	110	377	0	.	91	A	131486786	T	A	131486786	3	1	87	1	0	0	0	0	1	0	0	0	6653	1551	54	4	64	4	GPR148	2	131486786	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	87506003	131486786	111712587	20	11404											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	133540419	133540419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_207363	exon14	c.C3965G	p.S1322C	TTGGGAGAGCTTT	.	172	10	198	1	.	.	C	133540419	G	C	133540419	3	2	87	1	0	0	0	0	1	0	0	0	10223	942	33	4	1792	4	NCKAP5	2	133540419	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	2053633	133540419	109658954	21	11405											
SPHKAP	80309	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	228881311	228881311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPHKAP	NM_030623	exon7	c.C4259A	p.S1420X	CAAAGTGATCGCC	.	117	48	150	1	.	167	T	228881311	G	T	228881311	4	4	87	1	0	0	0	0	0	1	0	0	15047	1294	45	3	867	3	SPHKAP	2	228881311	Nonsense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	95340892	228881311	14318062	22	11406											
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240056082	240056082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HDAC4	NM_006037	exon11	c.C1153T	p.L385F	GGGAGAGCCTCTG	.	28	11	51	0	.	291	A	240056082	G	A	240056082	3	1	87	1	0	0	0	0	1	0	0	0	7009	971	34	3	2169	3	HDAC4	2	240056082	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	11174771	240056082	3143291	23	11407											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	rs28931588	bycluster	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94T	p.D32Y	TACCTGGACTCTG	.	301	109	355	1	G|1.000;T|0.000	24361	T	41266097	G	T	41266097	3	4	87	1	0	0	0	0	1	0	0	0	4016	1174	41	3	100	3	CTNNB1	3	41266097	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		41266097	156756333	24	11408											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52360896	52360896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH1	NM_015512	exon5	c.C727G	p.L243V	ATCTACCTCCCAC	.	228	60	325	0	.	67	G	52360896	C	G	52360896	3	3	87	1	0	0	0	0	1	0	0	0	4597	681	24	4	741	4	DNAH1	3	52360896	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	11094799	52360896	145661534	25	11409											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78688976	78688976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ROBO1	NM_002941	exon22	c.C2955A	p.N985K	GTGGTTGTTGCCA	.	123	48	150	0	.	67	T	78688976	G	T	78688976	3	4	87	1	0	0	0	0	1	0	0	0	13513	1368	48	3	2040	3	ROBO1	3	78688976	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	26328080	78688976	119333454	26	11410											
COL6A5	256076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130098358	130098358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_153264	exon4	c.G765T	p.Q255H	TCTTCAGACCTTC	.	113	56	143	1	.	.	T	130098358	G	T	130098358	3	4	87	1	0	0	0	0	1	0	0	0	3702	933	33	3	775	3	COL6A5	3	130098358	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	51409382	130098358	67924072	27	11411											
KLHL6	89857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183217548	183217548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KLHL6	NM_130446	exon4	c.G977T	p.G326V	GTGCAGCCGCCAA	.	126	46	141	2	.	93	A	183217548	C	A	183217548	3	1	87	1	0	0	0	0	1	0	0	0	8393	739	26	3	904	3	KLHL6	3	183217548	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	53119190	183217548	14804882	28	11412											
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4283593	4283593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LYAR	NM_017816	exon4	c.A154G	p.I52V	CACTTATGCATTT	.	188	82	214	0	.	90	C	4283593	T	C	4283593	3	2	87	1	0	0	0	0	1	0	0	0	9103	1464	51	2	1013	2	LYAR	4	4283593	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10		4283593	186870683	29	11413											
SLIT2	9353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20512134	20512134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	SLIT2,brain,glioma,-2	SLIT2	NM_004787	exon10	c.A931G	p.T311A	CAGAACACAATCA	.	20	4	41	0	.	521	G	20512134	A	G	20512134	3	3	87	1	0	0	0	0	1	0	0	0	14740	159	6	2	969	2	SLIT2	4	20512134	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	16228541	20512134	170642142	30	11414											
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965023	42965023	+	Missense_Mutation	SNP	C	C	A	rs192948915	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GRXCR1	NM_001080476	exon2	c.C499A	p.R167S	AACCATCGCGTAA	.	90	44	133	2	C|0.999;T|0.000	23	A	42965023	C	A	42965023	3	1	87	1	0	0	0	0	1	0	0	0	6812	884	31	1	505	1	GRXCR1	4	42965023	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	22452889	42965023	148189253	31	11415											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89039368	89039368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCG2	NM_004827	exon7	c.C734G	p.P245R	TATCGAGGCTGAT	.	120	49	188	0	.	90	C	89039368	G	C	89039368	3	2	87	1	0	0	0	0	1	0	0	0	69	1000	35	4	1273	4	ABCG2	4	89039368	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	46074345	89039368	102114908	32	11416											
SNCA	6622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90756778	90756778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SNCA	NM_000345	exon2	c.G41A	p.G14E	ACAACTCCCTCCT	.	154	60	200	0	.	90	T	90756778	C	T	90756778	3	4	87	1	0	0	0	0	1	0	0	0	14840	855	30	3	401	3	SNCA	4	90756778	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	1717410	90756778	100397498	33	11417											
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109084858	109084858	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LEF1	NM_016269	exon4	c.281-1G>A	.	GCTTTCCTGGGAA	.	90	26	165	0	.	721	T	109084858	C	T	109084858	5	4	87	1	0	0	0	0	0	0	1	0	8714	695	24	3	1039	3	LEF1	4	109084858	Splice_Site	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	18328080	109084858	82069418	34	11418											
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184182073	184182073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	WWC2	NM_024949	exon11	c.A1297G	p.S433G	TCTGCCAGCACCC	.	81	33	97	0	.	93	G	184182073	A	G	184182073	3	3	87	1	0	0	0	0	1	0	0	0	17409	188	7	2	1339	2	WWC2	4	184182073	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	75097215	184182073	6972203	35	11419											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70751716	70751716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BDP1	NM_018429	exon1	c.G12T	p.R4S	CCGCAGGGCACGC	.	44	20	69	0	.	92	T	70751716	G	T	70751716	3	4	87	1	0	0	0	0	1	0	0	0	1395	1223	43	3	14	3	BDP1	5	70751716	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		70751716	110163544	36	11420											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96342142	96342142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LNPEP	NM_005575	exon11	c.A1958G	p.H653R	TGTGGCATATTCC	.	173	59	228	0	.	229	G	96342142	A	G	96342142	3	3	87	1	0	0	0	0	1	0	0	0	8864	217	8	2	2000	2	LNPEP	5	96342142	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	25590426	96342142	84573118	37	11421											
PCDHA5	56143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140201921	140201921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA5	NM_018908	exon1	c.A561C	p.E187D	AGAAGAAACGAAC	.	66	28	91	1	.	137	C	140201921	A	C	140201921	3	2	87	1	0	0	0	0	1	0	0	0	11527	11	1	5	563	5	PCDHA5	5	140201921	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	43859779	140201921	40713339	38	11422											
PCDHA13	56136	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	140264081	140264081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA13	NM_031865	exon1	c.G2228T	p.S743I	GCTCCAGCGCGGC	.	46	14	64	0	.	75	T	140264081	G	T	140264081	3	4	87	1	0	0	0	0	1	0	0	0	11523	971	34	3	2230	3	PCDHA13	5	140264081	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	62160	140264081	40651179	39	11423											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150911280	150911280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAT2	NM_001447	exon13	c.G9679T	p.V3227L	CGGGCACCTGCAC	.	14	9	21	0	.	96	A	150911280	C	A	150911280	3	1	87	1	0	0	0	0	1	0	0	0	5690	507	18	3	3414	3	FAT2	5	150911280	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	10647199	150911280	30003980	40	11424											
DUSP1	1843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172197268	172197268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DUSP1	NM_004417	exon2	c.A409C	p.S137R	GTTTGCTGCACAG	.	202	79	281	1	.	659	G	172197268	T	G	172197268	3	3	87	1	0	0	0	0	1	0	0	0	4809	1580	55	5	706	5	DUSP1	5	172197268	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	21285988	172197268	8717992	41	11425											
C6orf62	81688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24714570	24714570	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C6orf62	NM_030939	exon3	c.T405C	p.S135S	CTCATCAGATTCT	.	98	27	168	0	.	90	G	24714570	A	G	24714570	2	3	87	1	0	0	0	0	0	0	0	1	2368	175	7	2		2	C6orf62	6	24714570	Silent	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10		24714570	146400497	42	11426											
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49698949	49698949	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRISP3	NM_001190986	exon7	c.T606C	p.N202N	TAGTCTATTAGCC	.	221	91	258	0	.	92	G	49698949	A	G	49698949	2	3	87	1	0	0	0	0	0	0	0	1	3881	446	16	2		2	CRISP3	6	49698949	Silent	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	24984379	49698949	121416118	43	11427											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76595796	76595796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO6	NM_004999	exon24	c.G2492A	p.R831K	GCAAGAGGAGACA	.	113	50	180	0	.	92	A	76595796	G	A	76595796	3	1	87	1	0	0	0	0	1	0	0	0	10081	1000	35	3	2582	3	MYO6	6	76595796	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	26896847	76595796	94519271	44	11428											
MRAP2	112609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84798909	84798909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MRAP2	NM_138409	exon4	c.C327G	p.N109K	AGGCAACGAGGAG	.	107	40	153	0	.	92	G	84798909	C	G	84798909	3	3	87	1	0	0	0	0	1	0	0	0	9754	535	19	4	337	4	MRAP2	6	84798909	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	8203113	84798909	86316158	45	11429											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	101296578	101296578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ASCC3	NM_006828	exon4	c.A247G	p.T83A	TATCAGTTCCAAC	.	35	16	40	0	.	96	C	101296578	T	C	101296578	3	2	87	1	0	0	0	0	1	0	0	0	1033	1725	60	2	6517	2	ASCC3	6	101296578	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	16497669	101296578	69818489	46	11430											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47930177	47930177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKD1L1	NM_138295	exon16	c.C2638T	p.R880W	ACACCCGGGTCTC	.	92	34	87	0	.	145	A	47930177	G	A	47930177	3	1	87	1	0	0	0	0	1	0	0	0	11964	1115	39	1	6079	1	PKD1L1	7	47930177	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		47930177	111208486	47	11431											
POM121L12	285877	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	53103689	53103689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_182595	exon1	c.G325T	p.G109W	GCTCTGGGGCGAG	.	17	6	19	0	.	.	T	53103689	G	T	53103689	3	4	87	1	0	0	0	0	1	0	0	0	12241	1232	43	3	327	3	POM121L12	7	53103689	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	5173512	53103689	106034974	48	11432											
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75615486	75615486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	POR	NM_000941	exon15	c.C1825G	p.Q609E	TACGTCCAGCACC	.	151	55	189	0	.	23	G	75615486	C	G	75615486	3	3	87	1	0	0	0	0	1	0	0	0	12257	595	21	4	1879	4	POR	7	75615486	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	22511797	75615486	83523177	49	11433											
SEMA3A	10371	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83610674	83610674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SEMA3A	NM_006080	exon14	c.G1615T	p.G539C	CAGAACCATCCCA	.	160	50	256	1	.	156	A	83610674	C	A	83610674	3	1	87	1	0	0	0	0	1	0	0	0	14024	594	21	3	716	3	SEMA3A	7	83610674	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	7995188	83610674	75527989	50	11434											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92935245	92935245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC132	NM_017667	exon18	c.G1558A	p.G520S	TGTAGTGGTGGGA	.	163	57	239	0	.	90	A	92935245	G	A	92935245	3	1	87	1	0	0	0	0	1	0	0	0	2767	1348	47	3	1670	3	CCDC132	7	92935245	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	9324571	92935245	66203418	51	11435											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111634195	111634195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DOCK4	NM_014705	exon5	c.T310A	p.Y104N	CCACATAGAGTTG	.	61	17	94	0	.	26	T	111634195	A	T	111634195	3	4	87	1	0	0	0	0	1	0	0	0	4689	420	15	4	5782	4	DOCK4	7	111634195	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	18698950	111634195	47504468	52	11436											
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139824552	139824552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JHDM1D	NM_030647	exon7	c.C920T	p.T307I	TCATCTGTTGGCT	.	65	20	91	0	.	91	A	139824552	G	A	139824552	3	1	87	1	0	0	0	0	1	0	0	0	7948	1377	48	3	1961	3	JHDM1D	7	139824552	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	28190357	139824552	19314111	53	11437											
PDIA4	9601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148703056	148703056	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PDIA4	NM_004911	exon8	c.G1221A	p.K407K	GTAGCGCTTAGCA	.	65	21	99	0	.	524	T	148703056	C	T	148703056	2	4	87	1	0	0	0	0	0	0	0	1	11670	796	28	3		3	PDIA4	7	148703056	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	8878504	148703056	10435607	54	11438											
HTRA4	203100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38831805	38831805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HTRA4	NM_153692	exon1	c.C23T	p.T8I	TGCGGACCGCGGG	.	73	32	103	0	.	90	T	38831805	C	T	38831805	3	4	87	1	0	0	0	0	1	0	0	0	7456	507	18	3	25	3	HTRA4	8	38831805	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10		38831805	107532217	55	11439											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48697806	48697806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PRKDC	.	.	.	.	CGTTGAAGTCACT	.	77	34	112	0	.	1515	C	48697806	A	C	48697806	3	2	87	1	0	0	0	0	1	0	0	0	12521	72	3	5	1451	5	PRKDC	8	48697806	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	9866001	48697806	97666216	56	11440											
MCM4	4173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48874204	48874204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MCM4	NM_182746	exon3	c.G199A	p.V67M	CAGGACGTGCTGT	.	126	55	131	0	.	230	A	48874204	G	A	48874204	3	1	87	1	0	0	0	0	1	0	0	0	9389	1145	40	1	205	1	MCM4	8	48874204	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	176398	48874204	97489818	57	11441											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69032483	69032483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PREX2	NM_024870	exon29	c.A3557G	p.D1186G	CCTTTGACCAAAC	.	111	51	121	0	.	390	G	69032483	A	G	69032483	3	3	87	1	0	0	0	0	1	0	0	0	12477	275	10	2	3900	2	PREX2	8	69032483	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	20158279	69032483	77331539	58	11442											
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70591818	70591818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLCO5A1	NM_030958	exon8	c.C1819T	p.R607C	CTTGGCGACTTTG	.	164	41	183	1	.	94	A	70591818	G	A	70591818	3	1	87	1	0	0	0	0	1	0	0	0	14731	1058	37	1	739	1	SLCO5A1	8	70591818	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	1559335	70591818	75772204	59	11443											
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	73480055	73480055	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KCNB2	NM_004770	exon2	c.86delG	p.R29fs	TTATCCGGAGCAA	.	155	85	147	0	.	158	-	73480055	G	-	73480055	7	5	87	1	0	1	0	1	0	0	0	0	8013	1116	39	0	88	0	KCNB2	8	73480055	Frame_Shift_Del	DEL	G	TCGA-DD-A4NF-01A-11D-A27I-10	2888237	73480055	72883967	60	11444											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	87229802	87229802	+	Nonsense_Mutation	SNP	A	A	T	rs201235225	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLC7A13	NM_138817	exon3	c.T1076A	p.L359X	TTTATCAAATCAA	.	99	29	97	0	A|0.999;G|0.001	90	T	87229802	A	T	87229802	4	4	87	1	0	0	0	0	0	1	0	0	14695	131	5	4	344	4	SLC7A13	8	87229802	Nonsense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	13749747	87229802	59134220	61	11445											
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95892419	95892419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INTS8	NM_017864	exon27	c.G2945A	p.R982K	AGAGAAGGAAAAA	.	166	38	146	0	.	90	A	95892419	G	A	95892419	3	1	87	1	0	0	0	0	1	0	0	0	7784	1000	35	3	3051	3	INTS8	8	95892419	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	8662617	95892419	50471603	62	11446											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110393732	110393732	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKHD1L1	NM_177531	exon3	c.A297G	p.T99T	AATTACATGCTAT	.	75	18	77	0	.	145	G	110393732	A	G	110393732	2	3	87	1	0	0	0	0	0	0	0	1	11972	204	8	2		2	PKHD1L1	8	110393732	Silent	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	14501313	110393732	35970290	63	11447											
TMEM71	137835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133769495	133769495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TMEM71	NM_144649	exon3	c.C86T	p.T29M	ATGCACGTGGGAG	.	129	37	154	1	.	92	A	133769495	G	A	133769495	3	1	87	1	0	0	0	0	1	0	0	0	16197	1145	40	1	833	1	TMEM71	8	133769495	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	23375763	133769495	12594527	64	11448											
INSL6	11172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	5164195	5164195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INSL6	NM_007179	exon2	c.G360T	p.K120N	ATATCCCTTTTTA	.	43	13	54	0	.	90	A	5164195	C	A	5164195	3	1	87	1	0	0	0	0	1	0	0	0	7770	680	24	3	285	3	INSL6	9	5164195	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10		5164195	136049236	65	11449											
C9orf72	203228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27566949	27566949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C9orf72	NM_018325	exon2	c.G170C	p.G57A	ATTTCTCCATCAC	.	162	66	204	1	.	517	G	27566949	C	G	27566949	3	3	87	1	0	0	0	0	1	0	0	0	2495	855	30	4	1319	4	C9orf72	9	27566949	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	22402754	27566949	113646482	66	11450											
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34622422	34622422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARID3C	NM_001017363	exon5	c.G970C	p.V324L	TCAGCACAGCTCT	.	65	17	99	0	.	91	G	34622422	C	G	34622422	3	3	87	1	0	0	0	0	1	0	0	0	918	478	17	4	279	4	ARID3C	9	34622422	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	7055473	34622422	106591009	67	11451											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72879295	72879295	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SMC5	NM_015110	exon2	c.G261T	p.S87S	GAAGTCGAGCATT	.	170	69	291	0	.	229	T	72879295	G	T	72879295	2	4	87	1	0	0	0	0	0	0	0	1	14786	1045	37	1		1	SMC5	9	72879295	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	38256873	72879295	68334136	68	11452											
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139916820	139916820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCA2	NM_212533	exon6	c.C640T	p.R214C	CCACACGGGCGGC	.	58	17	73	0	.	90	A	139916820	G	A	139916820	3	1	87	1	0	0	0	0	1	0	0	0	32	1116	39	1	6936	1	ABCA2	9	139916820	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	67037525	139916820	1296611	69	11453											
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22675715	22675715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPAG6	NM_172242	exon5	c.G505T	p.V169F	GGAGCTGTTCCTC	.	101	26	140	0	.	153	T	22675715	G	T	22675715	3	4	87	1	0	0	0	0	1	0	0	0	14982	1377	48	3	523	3	SPAG6	10	22675715	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		22675715	112859032	70	11454											
ZNF37A	7587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38406925	38406925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF37A	NM_003421	exon7	c.G846T	p.Q282H	CACCCAGAAGTCA	.	33	11	57	0	.	90	T	38406925	G	T	38406925	3	4	87	1	0	0	0	0	1	0	0	0	17869	933	33	3	860	3	ZNF37A	10	38406925	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	15731210	38406925	97127822	71	11455											
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca	37	10	50533616	50533616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C10orf71	NM_001135196	exon3	c.G3026A	p.G1009D	CCGAGGGTGACAT	.	240	98	341	0	.	90	A	50533616	G	A	50533616	3	1	87	1	0	0	0	0	1	0	0	0	1614	1261	44	3	3028	3	C10orf71	10	50533616	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	12126691	50533616	85001131	72	11456											
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50857589	50857589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CHAT	NM_020549	exon10	c.C1418A	p.S473Y	CAGACTCCGTCAG	.	162	79	187	0	.	514	A	50857589	C	A	50857589	3	1	87	1	0	0	0	0	1	0	0	0	3313	855	30	3	1500	3	CHAT	10	50857589	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	323973	50857589	84677158	73	11457											
NRG3	10718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	83635708	83635708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NRG3	NM_001165972	exon1	c.C612A	p.S204R	TAGCAGCACGCTG	.	75	33	99	1	.	522	A	83635708	C	A	83635708	3	1	87	1	0	0	0	0	1	0	0	0	10649	709	25	3	614	3	NRG3	10	83635708	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	32778119	83635708	51899039	74	11458											
OR51L1	119682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5021109	5021109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR51L1	NM_001004755	exon1	c.G897A	p.K299K	AACAAAGCAGATT	.	95	40	153	0	.	69	A	5021109	G	A	5021109	2	1	87	1	0	0	0	0	0	0	0	1	11102	962	34	3		3	OR51L1	11	5021109	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		5021109	129985407	75	11459											
KIF18A	81930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	28116256	28116256	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KIF18A	NM_031217	exon3	c.C417T	p.H139H	GTAAAGGTGTAAC	.	150	51	262	2	.	92	A	28116256	G	A	28116256	2	1	87	1	0	0	0	0	0	0	0	1	8280	1252	44	3		3	KIF18A	11	28116256	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	23095147	28116256	106890260	76	11460											
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58607044	58607044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GLYATL2	NM_145016	exon2	c.T42C	p.Y14Y	GGATTTATACAGA	.	88	38	166	0	.	92	G	58607044	A	G	58607044	2	3	87	1	0	0	0	0	0	0	0	1	6481	456	16	2		2	GLYATL2	11	58607044	Silent	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	30490788	58607044	76399472	77	11461											
SDHAF2	54949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61197634	61197634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SDHAF2	NM_017841	exon1	c.G16T	p.V6L	TCTACAGTGTTCT	.	58	12	91	0	.	92	T	61197634	G	T	61197634	3	4	87	1	0	0	0	0	1	0	0	0	13964	1029	36	3	18	3	SDHAF2	11	61197634	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	2590590	61197634	73808882	78	11462											
GAL	51083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68458398	68458398	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GAL	NM_015973	exon6	c.C315G	p.L105L	TGCCCTCGACCGC	.	55	19	94	0	.	90	G	68458398	C	G	68458398	2	3	87	1	0	0	0	0	0	0	0	1	6196	871	31	4		4	GAL	11	68458398	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	7260764	68458398	66548118	79	11463											
FAM76B	143684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	95522613	95522613	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM76B	NM_144664	exon1	c.C30A	p.T10T	ACACTTGGTGCAG	.	70	28	57	0	.	90	T	95522613	G	T	95522613	2	4	87	1	0	0	0	0	0	0	0	1	5625	1335	47	3		3	FAM76B	11	95522613	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	27064215	95522613	39483903	80	11464											
C11orf1	64776	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111753099	111753099	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C11orf1	NM_022761	exon2	c.A53T	p.N18I	GACAGAACCTCGC	.	119	40	213	1	.	90	T	111753099	A	T	111753099	3	4	87	1	0	0	0	0	1	0	0	0	1629	43	2	4	59	4	C11orf1	11	111753099	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	16230486	111753099	23253417	81	11465											
PARP11	57097	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3931251	3931251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PARP11	NM_020367	exon5	c.G417T	p.Q139H	TCTTACCTGATAT	.	82	37	104	1	.	523	A	3931251	C	A	3931251	3	1	87	1	0	0	0	0	1	0	0	0	11456	695	24	3	615	3	PARP11	12	3931251	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10		3931251	129920644	82	11466											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31586176	31586176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DENND5B	NM_144973	exon8	c.G2019T	p.W673C	ACTTACCCAGCGA	.	86	33	100	0	.	24	A	31586176	C	A	31586176	3	1	87	1	0	0	0	0	1	0	0	0	4437	624	22	3	1861	3	DENND5B	12	31586176	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	27654925	31586176	102265719	83	11467											
NXPH4	11247	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57618996	57618996	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NXPH4	NM_007224	exon2	c.T393C	p.H131H	GGACCATGTGAAC	.	59	15	62	1	.	68	C	57618996	T	C	57618996	2	2	87	1	0	0	0	0	0	0	0	1	10793	1461	51	2		2	NXPH4	12	57618996	Silent	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	26032820	57618996	76232899	84	11468											
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111342552	111342552	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC63	NM_152591	exon11	c.C1503T	p.P501P	CATCCCCCCAGTG	.	118	40	173	0	.	134	T	111342552	C	T	111342552	2	4	87	1	0	0	0	0	0	0	0	1	2834	610	22	3		3	CCDC63	12	111342552	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	53723556	111342552	22509343	85	11469											
SACS	26278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23907796	23907796	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SACS	NM_014363	exon10	c.C10219T	p.L3407L	ACTTTAGAATTTT	.	58	19	68	1	.	298	A	23907796	G	A	23907796	2	1	87	1	0	0	0	0	0	0	0	1	13804	933	33	3		3	SACS	13	23907796	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		23907796	91262082	86	11470											
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24864810	24864810	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPATA13	NM_001166271	exon9	c.T2868C	p.Y956Y	CATCTATTCCGAG	.	185	78	276	0	.	229	C	24864810	T	C	24864810	2	2	87	1	0	0	0	0	0	0	0	1	14999	1500	52	2		2	SPATA13	13	24864810	Silent	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	957014	24864810	90305068	87	11471											
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	31205167	31205167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	USPL1	NM_005800	exon4	c.A424T	p.N142Y	AAACATAATGGAG	.	67	22	70	0	.	524	T	31205167	A	T	31205167	3	4	87	1	0	0	0	0	1	0	0	0	17089	362	13	4	434	4	USPL1	13	31205167	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	6340357	31205167	83964711	88	11472											
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	58298754	58298754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDH17	NM_001040429	exon4	c.G2806T	p.E936X	CCAGAAGAGTGTG	.	94	40	92	0	.	97	T	58298754	G	T	58298754	4	4	87	1	0	0	0	0	0	1	0	0	11512	943	33	3	2820	3	PCDH17	13	58298754	Nonsense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	27093587	58298754	56871124	89	11473											
SOX21	11166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	95364066	95364066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOX21	NM_007084	exon1	c.C238T	p.R80W	TGCGCCGCGGCCG	.	154	63	164	0	.	514	A	95364066	G	A	95364066	3	1	87	1	0	0	0	0	1	0	0	0	14950	1086	38	1	596	1	SOX21	13	95364066	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	37065312	95364066	19805812	90	11474											
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65260364	65260364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTB	NM_001024858	exon13	c.C2017T	p.L673F	AGATGAGCACACT	.	183	77	244	0	.	100	A	65260364	G	A	65260364	3	1	87	1	0	0	0	0	1	0	0	0	15117	971	34	3	5130	3	SPTB	14	65260364	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		65260364	42089176	91	11475											
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69522154	69522154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF5	NM_003861	exon9	c.G1249T	p.A417S	AGAAGGCCATCAT	.	117	54	167	0	.	91	A	69522154	C	A	69522154	3	1	87	1	0	0	0	0	1	0	0	0	4273	739	26	3	1583	3	DCAF5	14	69522154	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	4261790	69522154	37827386	92	11476											
ATP10A	57194	ucsc.edu;bcgsc.ca	37	15	25924907	25924907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ATP10A	NM_024490	exon21	c.G4081A	p.V1361I	AGCAGACCGGCTG	.	35	4	56	0	.	139	T	25924907	C	T	25924907	3	4	87	1	0	0	0	0	1	0	0	0	1116	507	18	3	422	3	ATP10A	15	25924907	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10		25924907	76606485	93	11477											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28491165	28491165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HERC2	NM_004667	exon23	c.A3439G	p.K1147E	CATTTTTACTGAG	.	110	46	123	0	.	234	C	28491165	T	C	28491165	3	2	87	1	0	0	0	0	1	0	0	0	7058	1763	61	2	11349	2	HERC2	15	28491165	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	2566258	28491165	74040227	94	11478											
CSNK1G1	53944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	64508895	64508895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CSNK1G1	NM_022048	exon5	c.G310A	p.V104M	AATACACCTGTGG	.	150	64	237	0	.	319	T	64508895	C	T	64508895	3	4	87	1	0	0	0	0	1	0	0	0	3954	507	18	3	990	3	CSNK1G1	15	64508895	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	36017730	64508895	38022497	95	11479											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72189982	72189982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO9A	NM_006901	exon25	c.C4862G	p.S1621C	GTCTTGGATAATT	.	264	115	285	1	.	93	C	72189982	G	C	72189982	3	2	87	1	0	0	0	0	1	0	0	0	10084	1174	41	4	2856	4	MYO9A	15	72189982	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	7681087	72189982	30341410	96	11480											
BLM	641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91346865	91346865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BLM	NM_000057	exon18	c.A3473G	p.D1158G	ATGAAGACTTATA	.	125	38	177	1	.	664	G	91346865	A	G	91346865	3	3	87	1	0	0	0	0	1	0	0	0	1445	275	10	2	3539	2	BLM	15	91346865	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	19156883	91346865	11184527	97	11481											
SOLH	6650	ucsc.edu;mdanderson.org	37	16	601376	601376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOLH	NM_005632	exon8	c.G2141A	p.R714H	GCCTGCGCCCCCG	.	15	3	35	0	.	523	A	601376	G	A	601376	3	1	87	1	0	0	0	0	1	0	0	0	14925	1087	38	1	2159	1	SOLH	16	601376	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		601376	89753377	98	11482											
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1545384	1545384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TELO2	NM_016111	exon3	c.G373C	p.A125P	CTGCTGGCCAGAT	.	14	7	19	0	.	90	C	1545384	G	C	1545384	3	2	87	1	0	0	0	0	1	0	0	0	15754	1203	42	4	379	4	TELO2	16	1545384	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	944008	1545384	88809369	99	11483											
TBL3	10607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2026901	2026901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TBL3	NM_006453	exon14	c.C1379T	p.T460I	AGAACACAGCCCC	.	113	38	195	0	.	90	T	2026901	C	T	2026901	3	4	87	1	0	0	0	0	1	0	0	0	15640	478	17	3	1433	3	TBL3	16	2026901	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	481517	2026901	88327852	100	11484											
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29994582	29994582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TAOK2	NM_004783	exon12	c.C1189T	p.R397W	GAAGCCCGGGAGA	.	54	22	60	0	.	521	T	29994582	C	T	29994582	3	4	87	1	0	0	0	0	1	0	0	0	15545	643	23	1	1231	1	TAOK2	16	29994582	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	27967681	29994582	60360171	101	11485											
ZNF423	23090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671538	49671538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF423	NM_015069	exon4	c.A1525C	p.N509H	AGGGGTTGGCGTT	.	84	32	110	1	.	228	G	49671538	T	G	49671538	3	3	87	1	0	0	0	0	1	0	0	0	17895	1812	63	5	2349	5	ZNF423	16	49671538	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	19676956	49671538	40683215	102	11486											
FAM192A	80011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57197926	57197926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM192A	NM_024946	exon6	c.T534A	p.D178E	CTTGTCATCTGGC	.	168	67	228	0	.	90	T	57197926	A	T	57197926	3	4	87	1	0	0	0	0	1	0	0	0	5523	214	8	4	238	4	FAM192A	16	57197926	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	7526388	57197926	33156827	103	11487											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70896085	70896085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HYDIN	NM_001270974	exon69	c.C11643G	p.H3881Q	GGCCCAGTGGTCC	.	111	40	184	0	.	92	C	70896085	G	C	70896085	3	2	87	1	0	0	0	0	1	0	0	0	7467	1020	36	4	3794	4	HYDIN	16	70896085	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	13698159	70896085	19458668	104	11488											
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81925146	81925146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLCG2	NM_002661	exon11	c.G937A	p.D313N	ATGCAGGACATGA	.	239	81	335	0	.	892	A	81925146	G	A	81925146	3	1	87	1	0	0	0	0	1	0	0	0	12036	1174	41	3	975	3	PLCG2	16	81925146	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	11029061	81925146	8429607	105	11489											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7726895	7726895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH2	NM_020877	exon73	c.G11278T	p.D3760Y	CCTCGTGACTGGC	.	214	83	244	0	.	102	T	7726895	G	T	7726895	3	4	87	1	0	0	0	0	1	0	0	0	4602	1290	45	3	11568	3	DNAH2	17	7726895	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		7726895	73468315	106	11490											
TEKT3	64518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15234365	15234365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TEKT3	NM_031898	exon3	c.A538G	p.R180G	CCAGTCTTTTCTT	.	93	34	94	1	.	92	C	15234365	T	C	15234365	3	2	87	1	0	0	0	0	1	0	0	0	15751	1617	56	2	962	2	TEKT3	17	15234365	Missense_Mutation	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	7507470	15234365	65960845	107	11491											
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30814788	30814788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CDK5R1	NM_003885	exon2	c.G150A	p.L50L	CGTGCTGCCTTGG	.	252	87	337	0	.	651	A	30814788	G	A	30814788	2	1	87	1	0	0	0	0	0	0	0	1	3143	1306	46	3		3	CDK5R1	17	30814788	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	15580423	30814788	50380422	108	11492											
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72281284	72281284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAI2	NM_001172810	exon3	c.C289T	p.R97W	CGTTTCCGGAAGA	.	138	7	204	0	.	92	T	72281284	C	T	72281284	3	4	87	1	0	0	0	0	1	0	0	0	4610	643	23	1	295	1	DNAI2	17	72281284	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	41466496	72281284	8913926	109	11493											
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79414175	79414175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BAHCC1	.	.	.	.	CCGGGGGCCCAGC	.	38	16	50	0	.	23	T	79414175	G	T	79414175	3	4	87	1	0	0	0	0	1	0	0	0	1296	1203	42	3	3150	3	BAHCC1	17	79414175	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	7132891	79414175	1781035	110	11494											
CIRBP	1153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1271158	1271158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CIRBP	NM_001280	exon3	c.G123C	p.R41S	AGACAGGGAGACC	.	264	82	396	0	.	226	C	1271158	G	C	1271158	3	2	87	1	0	0	0	0	1	0	0	0	3433	1223	43	4	129	4	CIRBP	19	1271158	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		1271158	57857825	111	11495											
ADAMTSL5	339366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1506875	1506875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ADAMTSL5	NM_213604	exon10	c.G905A	p.R302Q	CGCTCCCGAGGGA	.	87	34	99	1	.	90	T	1506875	C	T	1506875	3	4	87	1	0	0	0	0	1	0	0	0	278	652	23	1	522	1	ADAMTSL5	19	1506875	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	235717	1506875	57622108	112	11496											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085930	9085930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MUC16	NM_024690	exon1	c.T5885A	p.M1962K	TGTGTCATGGGTG	.	186	62	280	1	.	566	T	9085930	A	T	9085930	3	4	87	1	0	0	0	0	1	0	0	0	9973	217	8	4	37974	4	MUC16	19	9085930	Missense_Mutation	SNP	A	TCGA-DD-A4NF-01A-11D-A27I-10	7579055	9085930	50043053	113	11497											
ZNF440	126070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11942559	11942559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF440	NM_152357	exon4	c.C568G	p.H190D	CGAAGACACATGG	.	176	78	226	2	.	68	G	11942559	C	G	11942559	3	3	87	1	0	0	0	0	1	0	0	0	17910	478	17	4	582	4	ZNF440	19	11942559	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	2856629	11942559	47186424	114	11498											
MAST1	22983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12969450	12969450	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MAST1	NM_014975	exon12	c.G1263A	p.V421V	CTTTGTGGAGCGC	.	160	62	169	1	.	523	A	12969450	G	A	12969450	2	1	87	1	0	0	0	0	0	0	0	1	9324	1335	47	3		3	MAST1	19	12969450	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	1026891	12969450	46159533	115	11499											
CILP2	148113	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	19655986	19655986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CILP2	NM_153221	exon8	c.G2632A	p.V878M	GGGCCTGTGTACC	.	15	8	15	1	.	91	A	19655986	G	A	19655986	3	1	87	1	0	0	0	0	1	0	0	0	3430	1377	48	3	2662	3	CILP2	19	19655986	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	6686536	19655986	39472997	116	11500											
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22362974	22362974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF676	NM_001001411	exon3	c.C1545G	p.S515R	GGACCAGCTGAAG	.	27	13	26	0	.	90	C	22362974	G	C	22362974	3	2	87	1	0	0	0	0	1	0	0	0	18080	962	34	4	225	4	ZNF676	19	22362974	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	2706988	22362974	36766009	117	11501											
LTBP4	8425	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	41133674	41133674	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LTBP4	.	.	.	.	CTGCACCAACGGC	.	16	11	14	0	.	93	T	41133674	C	T	41133674	2	4	87	1	0	0	0	0	0	0	0	1	9076	581	21	3		3	LTBP4	19	41133674	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	18770700	41133674	17995309	118	11502											
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47861354	47861354	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DHX34	NM_014681	exon4	c.C1249T	p.L417L	AGCGCCCTGTCTG	.	39	16	50	0	.	231	T	47861354	C	T	47861354	2	4	87	1	0	0	0	0	0	0	0	1	4507	680	24	3		3	DHX34	19	47861354	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	6727680	47861354	11267629	119	11503											
ETFB	2109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51857606	51857606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ETFB	NM_001014763	exon1	c.G287A	p.C96Y	AACAGGCAAGAAG	.	42	18	99	1	.	90	T	51857606	C	T	51857606	3	4	87	1	0	0	0	0	1	0	0	0	5270	710	25	3	773	3	ETFB	19	51857606	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	3996252	51857606	7271377	120	11504											
BPI	671	ucsc.edu;bcgsc.ca	37	20	36937389	36937389	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BPI	NM_001725	exon3	c.G315T	p.V105V	CAATGTGGGCCTT	.	279	118	323	2	.	94	T	36937389	G	T	36937389	2	4	87	1	0	0	0	0	0	0	0	1	1490	1335	47	3		3	BPI	20	36937389	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		36937389	26088131	121	11505											
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42788302	42788302	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JPH2	NM_020433	exon2	c.C1125G	p.R375R	AGCGGCGCGCTGG	.	18	4	21	0	.	91	C	42788302	G	C	42788302	2	2	87	1	0	0	0	0	0	0	0	1	7961	1074	38	4		4	JPH2	20	42788302	Silent	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	5850913	42788302	20237218	122	11506											
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35166772	35166772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ITSN1	NM_001001132	exon17	c.G1952T	p.R651I	CCCAAAGGTGAGT	.	134	46	178	1	.	94	T	35166772	G	T	35166772	3	4	87	1	0	0	0	0	1	0	0	0	7926	1014	35	3	2014	3	ITSN1	21	35166772	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		35166772	12963123	123	11507											
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42617961	42617961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BACE2	NM_138992	exon6	c.G955A	p.V319M	GATGCGGTGGTGG	.	138	51	155	0	.	92	A	42617961	G	A	42617961	3	1	87	1	0	0	0	0	1	0	0	0	1282	1261	44	3	977	3	BACE2	21	42617961	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	7451189	42617961	5511934	124	11508											
PHEX	5251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22117127	22117127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHEX	NM_000444	exon9	c.G937A	p.D313N	CAGTTCGACTGGC	.	34	21	31	0	.	132	A	22117127	G	A	22117127	3	1	87	1	0	0	0	0	1	0	0	0	11819	1058	37	1	971	1	PHEX	23	22117127	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10		22117127	133153433	125	11509											
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50376662	50376662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SHROOM4	NM_020717	exon4	c.C2411T	p.P804L	GGTTTTGGTCTCT	.	91	72	114	0	.	131	A	50376662	G	A	50376662	3	1	87	1	0	0	0	0	1	0	0	0	14296	1348	47	3	2094	3	SHROOM4	23	50376662	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	28259535	50376662	104893898	126	11510											
PHF8	23133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54022132	54022132	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHF8	NM_001184896	exon12	c.G1425A	p.L475L	TTCCACCAGGCGG	.	33	24	80	0	.	133	T	54022132	C	T	54022132	2	4	87	1	0	0	0	0	0	0	0	1	11840	581	21	3		3	PHF8	23	54022132	Silent	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	3645470	54022132	101248428	127	11511											
FAM46D	169966	ucsc.edu;bcgsc.ca	37	X	79698052	79698052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM46D	NM_001170574	exon5	c.G14A	p.R5K	AAATCAGATTCAC	.	238	212	203	2	.	130	A	79698052	G	A	79698052	3	1	87	1	0	0	0	0	1	0	0	0	5568	942	33	3	16	3	FAM46D	23	79698052	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	25675920	79698052	75572508	128	11512											
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011411	105011411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	IL1RAPL2,NS,carcinoma,0	IL1RAPL2	NM_017416	exon11	c.C1818A	p.F606L	TGAATTCCACCCT	.	260	225	201	0	.	194	A	105011411	C	A	105011411	3	1	87	1	0	0	0	0	1	0	0	0	7662	854	30	3	1856	3	IL1RAPL2	23	105011411	Missense_Mutation	SNP	C	TCGA-DD-A4NF-01A-11D-A27I-10	25313359	105011411	50259149	129	11513											
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125685361	125685361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF12L1	NM_178470	exon1	c.C1231T	p.L411F	GGTTGAGCCAGCC	.	281	132	218	1	.	132	A	125685361	G	A	125685361	3	1	87	1	0	0	0	0	1	0	0	0	4264	971	34	3	164	3	DCAF12L1	23	125685361	Missense_Mutation	SNP	G	TCGA-DD-A4NF-01A-11D-A27I-10	20673950	125685361	29585199	130	11514											
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153129931	153129931	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	L1CAM	NM_000425	exon24	c.A3168G	p.E1056E	CTTCTCTTCTGCC	.	90	44	98	0	.	138	C	153129931	T	C	153129931	2	2	87	1	0	0	0	0	0	0	0	1	8588	1623	56	2		2	L1CAM	23	153129931	Silent	SNP	T	TCGA-DD-A4NF-01A-11D-A27I-10	27444570	153129931	2140629	131	11515											
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1257366	1257366	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CPSF3L	.	.	.	.	GCTGCCTGCCACA	.	151	81	272	0	.	90	G	1257366	T	G	1257366	5	3	88	1	0	0	0	0	0	0	1	0	3827	1595	55	5		5	CPSF3L	1	1257366	Splice_Site	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10		1257366	247993255	1	11516											
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43076659	43076659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CCDC30	NM_001080850	exon10	c.G1394A	p.S465N	TCAAAAGCAACCA	.	35	9	62	0	.	90	A	43076659	G	A	43076659	3	1	88	1	0	0	0	0	1	0	0	0	2805	971	34	3	1428	3	CCDC30	1	43076659	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	41819293	43076659	206173962	2	11517											
VAV3	10451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108116734	108116734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	VAV3	NM_006113	exon26	c.G2437T	p.D813Y	CCACATCTCCTTT	.	137	67	223	2	.	1339	A	108116734	C	A	108116734	3	1	88	1	0	0	0	0	1	0	0	0	17130	913	32	3	114	3	VAV3	1	108116734	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	65040075	108116734	141133887	3	11518											
CD1B	910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158301185	158301185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CD1B	NM_001764	exon1	c.C29A	p.A10D	AGAACAGCTAACA	.	292	62	271	0	.	92	T	158301185	G	T	158301185	3	4	88	1	0	0	0	0	1	0	0	0	2975	971	34	3	996	3	CD1B	1	158301185	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	50184451	158301185	90949436	4	11519											
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175737	159175737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DARC	NM_001122951	exon1	c.A514T	p.T172S	GGGCTCACTGTGG	.	104	23	92	0	.	659	T	159175737	A	T	159175737	3	4	88	1	0	0	0	0	1	0	0	0	4240	159	6	4	541	4	DARC	1	159175737	Missense_Mutation	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	874552	159175737	90074884	5	11520											
ANGPTL1	9068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178822882	178822882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANGPTL1	NM_004673	exon4	c.T864C	p.H288H	GACCGAATGCCCA	.	112	19	113	0	.	90	G	178822882	A	G	178822882	2	3	88	1	0	0	0	0	0	0	0	1	613	98	4	2		2	ANGPTL1	1	178822882	Silent	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	19647145	178822882	70427739	6	11521											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181767517	181767517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	CACNA1E,NS,carcinoma,0	CACNA1E	NM_001205293	exon48	c.G6489A	p.P2163P	CGTCCCGCCAAAG	.	111	34	89	1	.	95	A	181767517	G	A	181767517	2	1	88	1	0	0	0	0	0	0	0	1	2542	1074	38	1		1	CACNA1E	1	181767517	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	2944635	181767517	67483104	7	11522											
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	218609331	218609331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TGFB2	NM_001135599	exon6	c.A858G	p.T286T	CTCCACATATACC	.	73	22	66	0	.	710	G	218609331	A	G	218609331	2	3	88	1	0	0	0	0	0	0	0	1	15815	204	8	2		2	TGFB2	1	218609331	Silent	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	36841814	218609331	30641290	8	11523											
DEGS1	8560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224377758	224377758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DEGS1	NM_003676	exon2	c.A562T	p.I188F	GAAGTTATCAATA	.	89	22	76	1	.	90	T	224377758	A	T	224377758	3	4	88	1	0	0	0	0	1	0	0	0	4422	449	16	4	568	4	DEGS1	1	224377758	Missense_Mutation	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	5768427	224377758	24872863	9	11524											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu	37	2	1093900	1093900	+	Missense_Mutation	SNP	C	C	T	rs192264442	alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTG2	NM_018968	exon3	c.C229T	p.R77C	ACACTCCGCAGAC	.	88	4	116	0	C|0.998;A|0.002	136	T	1093900	C	T	1093900	3	4	88	1	0	0	0	0	1	0	0	0	14875	652	23	1	239	1	SNTG2	2	1093900	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		1093900	242105473	10	11525											
MBOAT2	129642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9022691	9022691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MBOAT2	NM_138799	exon6	c.G456A	p.M152I	CCGAAACATCCCT	.	153	47	173	1	.	90	T	9022691	C	T	9022691	3	4	88	1	0	0	0	0	1	0	0	0	9357	478	17	3	1138	3	MBOAT2	2	9022691	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	7928791	9022691	234176682	11	11526											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	15378653	15378653	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NBAS	NM_015909	exon45	c.C5882G	p.S1961X	GCAAGTGATTTCT	.	82	35	120	0	.	94	C	15378653	G	C	15378653	4	2	88	1	0	0	0	0	0	1	0	0	10186	1294	45	4	1265	4	NBAS	2	15378653	Nonsense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	6355962	15378653	227820720	12	11527											
APOB	338	hgsc.bcm.edu;bcgsc.ca	37	2	21229380	21229381	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	APOB,back,malignant_melanoma,+2	APOB	NM_000384	exon26	c.10360_10361insT	p.V3454fs	AAGAGACAGTAGG	.	181	58	196	0	.	175	A	21229381	-	A	21229380	7	5	88	1	0	1	1	0	0	0	0	0	785	478	17	0	3347	0	APOB	2	21229380	Frame_Shift_Ins	INS	-	TCGA-DD-A4NG-01A-11D-A27I-10	5850727	21229380	221969993	13	11528											
SULT6B1	391365	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	37414600	37414600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SULT6B1	NM_001032377	exon2	c.G96T	p.W32C	GAGAATCCAGTTT	.	21	5	39	0	.	91	A	37414600	C	A	37414600	3	1	88	1	0	0	0	0	1	0	0	0	15381	856	30	3	725	3	SULT6B1	2	37414600	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	16185220	37414600	205784773	14	11529											
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48958372	48958372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LHCGR	NM_000233	exon2	c.T227G	p.I76R	ATTTTTATGACCT	.	29	11	31	0	.	589	C	48958372	A	C	48958372	3	2	88	1	0	0	0	0	1	0	0	0	8762	449	16	5	1912	5	LHCGR	2	48958372	Missense_Mutation	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	11543772	48958372	194241001	15	11530											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54876897	54876897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SPTBN1	NM_003128	exon26	c.T5348G	p.L1783R	ATGGCCTCAATGA	.	258	80	279	0	.	140	G	54876897	T	G	54876897	3	3	88	1	0	0	0	0	1	0	0	0	15118	1551	54	5	5559	5	SPTBN1	2	54876897	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	5918525	54876897	188322476	16	11531											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179499955	179499955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TTN	NM_001267550	exon228	c.A41961C	p.E13987D	TGAGATTTCTGCA	.	119	39	130	0	.	636	G	179499955	T	G	179499955	3	3	88	1	0	0	0	0	1	0	0	0	16732	1838	64	5	66272	5	TTN	2	179499955	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	124623058	179499955	63699418	17	11532											
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219674376	219674376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CYP27A1	NM_000784	exon2	c.C332T	p.A111V	CCAGTGCCCCGCT	.	205	73	211	0	.	91	T	219674376	C	T	219674376	3	4	88	1	0	0	0	0	1	0	0	0	4158	739	26	3	338	3	CYP27A1	2	219674376	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	40174421	219674376	23524997	18	11533											
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	30819694	30819694	+	Nonsense_Mutation	SNP	C	C	A	rs145224145	alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GADL1	NM_207359	exon14	c.G1369T	p.E457X	AGAACTCGGGTCC	.	230	78	298	1	C|0.999;T|0.000	90	A	30819694	C	A	30819694	4	1	88	1	0	0	0	0	0	1	0	0	6185	893	31	1	204	1	GADL1	3	30819694	Nonsense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		30819694	167202736	19	11534											
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43381915	43381915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNRK	NM_017719	exon5	c.C868G	p.L290V	AAAAATCTCTCGG	.	217	70	200	0	.	815	G	43381915	C	G	43381915	3	3	88	1	0	0	0	0	1	0	0	0	14851	913	32	4	878	4	SNRK	3	43381915	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	12562221	43381915	154640515	20	11535											
TLR9	54106	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52256679	52256679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TLR9	NM_017442	exon2	c.C1653A	p.D551E	GCTGAGGTCCAGG	.	130	49	84	1	.	587	T	52256679	G	T	52256679	3	4	88	1	0	0	0	0	1	0	0	0	15955	1252	44	3	1449	3	TLR9	3	52256679	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	8874764	52256679	145765751	21	11536											
OR5K3	403277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98109590	98109590	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR5K3	NM_001005516	exon1	c.G81C	p.L27L	TGTTCTGTTTGTG	.	218	58	289	0	.	68	C	98109590	G	C	98109590	2	2	88	1	0	0	0	0	0	0	0	1	11168	1364	48	4		4	OR5K3	3	98109590	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	45852911	98109590	99912840	22	11537											
ST3GAL6	10402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98487331	98487331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ST3GAL6	NM_001271145	exon2	c.A206C	p.Y69S	TCCTCTATTATGT	.	121	41	188	0	.	91	C	98487331	A	C	98487331	3	2	88	1	0	0	0	0	1	0	0	0	15218	449	16	5	49	5	ST3GAL6	3	98487331	Missense_Mutation	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	377741	98487331	99535099	23	11538											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	121416717	121416717	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GOLGB1	NM_001256486	exon13	c.C2653T	p.Q885X	AGAGCTGATCCAT	.	96	29	137	0	.	161	A	121416717	G	A	121416717	4	1	88	1	0	0	0	0	0	1	0	0	6565	1299	45	3	7181	3	GOLGB1	3	121416717	Nonsense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	22929386	121416717	76605713	24	11539											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998531	173998531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NLGN1	NM_014932	exon7	c.G1910T	p.R637I	CTTTCAGACCTAC	.	157	53	186	0	.	231	T	173998531	G	T	173998531	3	4	88	1	0	0	0	0	1	0	0	0	10461	942	33	3	1928	3	NLGN1	3	173998531	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	52581814	173998531	24023899	25	11540											
KCNMB3	27094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178984440	178984440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KCNMB3	NM_171828	exon1	c.G59A	p.G20E	TACCTCCCCTGGC	.	69	29	87	0	.	90	T	178984440	C	T	178984440	3	4	88	1	0	0	0	0	1	0	0	0	8076	623	22	3	997	3	KCNMB3	3	178984440	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	4985909	178984440	19037990	26	11541											
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184947229	184947229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EHHADH	NM_001966	exon4	c.A454G	p.I152V	AGGTAATTAAGTC	.	106	40	120	0	.	93	C	184947229	T	C	184947229	3	2	88	1	0	0	0	0	1	0	0	0	4982	1493	52	2	1733	2	EHHADH	3	184947229	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	5962789	184947229	13075201	27	11542											
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4199475	4199475	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OTOP1	NM_177998	exon5	c.G1086T	p.G362G	CGCAGCCCCCATA	.	176	54	179	0	.	92	A	4199475	C	A	4199475	2	1	88	1	0	0	0	0	0	0	0	1	11305	610	22	3		3	OTOP1	4	4199475	Silent	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		4199475	186954801	28	11543											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104066455	104066455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CENPE	NM_001813	exon32	c.A4609G	p.I1537V	GTTTTATATTAAA	.	49	14	52	0	.	277	C	104066455	T	C	104066455	3	2	88	1	0	0	0	0	1	0	0	0	3230	1406	49	2	3568	2	CENPE	4	104066455	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	99866980	104066455	87087821	29	11544											
CTNND2	1501	broad.mit.edu;ucsc.edu	37	5	11117631	11117631	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CTNND2	NM_001332	exon13	c.T2208A	p.C736X	CCCATCACACTCT	.	228	72	236	1	.	293	T	11117631	A	T	11117631	4	4	88	1	0	0	0	0	0	1	0	0	4020	157	6	4	1509	4	CTNND2	5	11117631	Nonsense_Mutation	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10		11117631	169797629	30	11545											
RAD1	5810	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34914910	34914910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RAD1	NM_002853	exon2	c.A88G	p.I30V	TCAAGATAGTGGA	.	255	66	304	1	.	227	C	34914910	T	C	34914910	3	2	88	1	0	0	0	0	1	0	0	0	12978	1406	49	2	780	2	RAD1	5	34914910	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	23797279	34914910	146000350	31	11546											
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	156918883	156918885	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ADAM19	NM_033274	exon17	c.1944_1946del	p.648_649del	GTTTCAAAGAAGG	.	158	44	209	0	.	294	-	156918885	AAG	-	156918883	7	5	88	1	0	1	0	1	0	0	0	0	240	14	1	0	838	0	ADAM19	5	156918883	In_Frame_Del	DEL	AAG	TCGA-DD-A4NG-01A-11D-A27I-10	122003973	156918883	23996377	32	11547											
CANX	821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179150758	179150758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CANX	NM_001746	exon12	c.T1496A	p.I499N	TGGTTATCCTCTT	.	103	34	149	1	.	90	A	179150758	T	A	179150758	3	1	88	1	0	0	0	0	1	0	0	0	2618	1435	50	4	1538	4	CANX	5	179150758	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	22231875	179150758	1764502	33	11548											
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4935914	4935914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDYL	NM_004824	exon3	c.G857C	p.R286T	CCTACAGATACAG	.	251	167	170	1	.	90	C	4935914	G	C	4935914	3	2	88	1	0	0	0	0	1	0	0	0	3185	942	33	4	867	4	CDYL	6	4935914	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10		4935914	166179153	34	11549											
NOL7	51406	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13618350	13618350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NOL7	NM_016167	exon5	c.T479C	p.V160A	TTAAAGTACAAAA	.	263	60	223	1	.	90	C	13618350	T	C	13618350	3	2	88	1	0	0	0	0	1	0	0	0	10526	1638	57	2	497	2	NOL7	6	13618350	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	8682436	13618350	157496717	35	11550											
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32063403	32063403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TNXB	NM_019105	exon3	c.G2227A	p.E743K	AGTCTTCGCCAGC	.	580	96	300	1	.	90	T	32063403	C	T	32063403	3	4	88	1	0	0	0	0	1	0	0	0	16343	893	31	1	12654	1	TNXB	6	32063403	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	18445053	32063403	139051664	36	11551											
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117019926	117019927	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KPNA5	NM_002269	exon5	c.400_401del	p.134_134del	TTTGTGAAATTTC	.	49	23	109	0	.	290	-	117019927	AA	-	117019926	7	5	88	1	0	1	0	1	0	0	0	0	8433	247	9	0	418	0	KPNA5	6	117019926	Frame_Shift_Del	DEL	AA	TCGA-DD-A4NG-01A-11D-A27I-10	84956523	117019926	54095141	37	11552											
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73013995	73013995	+	Missense_Mutation	SNP	G	G	A	rs146487355	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MLXIPL	NM_032954	exon8	c.C932T	p.P311L	ATGGGCGGCTGTG	.	85	27	73	0	G|0.998;A|0.002	91	A	73013995	G	A	73013995	3	1	88	1	0	0	0	0	1	0	0	0	9637	1116	39	1	1666	1	MLXIPL	7	73013995	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10		73013995	86124668	38	11553											
C7orf43	55262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99754066	99754066	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C7orf43	NM_018275	exon8	c.A1183T	p.N395Y	GGAGATTGTTAAG	.	313	86	225	1	.	90	A	99754066	T	A	99754066	3	1	88	1	0	0	0	0	1	0	0	0	2393	1812	63	4	575	4	C7orf43	7	99754066	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	26740071	99754066	59384597	39	11554											
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	110764538	110764538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LRRN3	NM_018334	exon2	c.1710delA	p.R570fs	TGCTCGAATACCA	.	71	20	61	0	.	154	-	110764538	A	-	110764538	7	5	88	1	0	1	0	1	0	0	0	0	9036	233	9	0	1712	0	LRRN3	7	110764538	Frame_Shift_Del	DEL	A	TCGA-DD-A4NG-01A-11D-A27I-10	11010472	110764538	48374125	40	11555											
WASL	8976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123334793	123334793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WASL	NM_003941	exon8	c.G802A	p.V268I	TTTTAACAGCTTC	.	100	24	87	0	.	90	T	123334793	C	T	123334793	3	4	88	1	0	0	0	0	1	0	0	0	17253	478	17	3	731	3	WASL	7	123334793	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	12570255	123334793	35803870	41	11556											
WEE2	494551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141408580	141408580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WEE2	NM_001105558	exon1	c.22delA	p.K8fs	ATTGACAAAGAAC	.	96	50	103	0	.	305	-	141408580	A	-	141408580	7	5	88	1	0	1	0	1	0	0	0	0	17342	131	5	0	24	0	WEE2	7	141408580	Frame_Shift_Del	DEL	A	TCGA-DD-A4NG-01A-11D-A27I-10	18073787	141408580	17730083	42	11557											
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu	37	8	121824005	121824005	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTB1	NM_021021	exon1	c.G79T	p.E27X	AAACTTCCAGCAG	.	42	5	19	0	.	228	A	121824005	C	A	121824005	4	1	88	1	0	0	0	0	0	1	0	0	14872	864	30	3	1565	3	SNTB1	8	121824005	Nonsense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		121824005	24540017	43	11558											
PTPLAD2	401494	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008070	21008070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C566T	p.S189F	TAGATGGATAAGT	.	81	19	135	1	.	91	A	21008070	G	A	21008070	3	1	88	1	0	0	0	0	1	0	0	0	12776	1174	41	3	140	3	PTPLAD2	9	21008070	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10		21008070	120205361	44	11559											
PTPLAD2	401494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008109	21008109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C527T	p.S176L	CCAAATGATTCAA	.	84	21	133	0	.	91	A	21008109	G	A	21008109	3	1	88	1	0	0	0	0	1	0	0	0	12776	1294	45	3	179	3	PTPLAD2	9	21008109	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	39	21008109	120205322	45	11560											
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96233651	96233652	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FAM120A	NM_014612	exon2	c.703_704insT	p.I235fs	TTTCCTATTTTTG	.	161	31	184	0	.	90	T	96233652	-	T	96233651	7	5	88	1	0	1	1	0	0	0	0	0	5415	449	16	0	709	0	FAM120A	9	96233651	Frame_Shift_Ins	INS	-	TCGA-DD-A4NG-01A-11D-A27I-10	75225542	96233651	44979780	46	11561											
CDNF	441549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14862095	14862095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDNF	NM_001029954	exon4	c.A448G	p.I150V	GCAGGATCTGCTT	.	155	39	93	1	.	90	C	14862095	T	C	14862095	3	2	88	1	0	0	0	0	1	0	0	0	3168	1435	50	2	119	2	CDNF	10	14862095	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10		14862095	120672652	47	11562											
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14951131	14951131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DCLRE1C	NM_001033855	exon14	c.G1355T	p.C452F	TCTTCACAATCTA	.	107	31	99	0	.	228	A	14951131	C	A	14951131	3	1	88	1	0	0	0	0	1	0	0	0	4296	478	17	3	727	3	DCLRE1C	10	14951131	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	89036	14951131	120583616	48	11563											
GAD2	2572	hgsc.bcm.edu;bcgsc.ca	37	10	26505807	26505807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GAD2	NM_000818	exon1	c.C69T	p.P23P	GAATCCCGGCACA	.	59	4	52	0	.	515	T	26505807	C	T	26505807	2	4	88	1	0	0	0	0	0	0	0	1	6180	639	23	1		1	GAD2	10	26505807	Silent	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	11554676	26505807	109028940	49	11564											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1267292	1267292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_002458	exon31	c.C9182A	p.S3061Y	CCAAATCCACAGC	.	409	123	397	1	.	.	A	1267292	C	A	1267292	3	1	88	1	0	0	0	0	1	0	0	0	9979	855	30	3	9313	3	MUC5B	11	1267292	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		1267292	133739224	50	11565											
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5529136	5529136	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBQLN3	NM_017481	exon2	c.G1653T	p.G551G	ACCCGTCCCTGCT	.	95	27	89	0	.	93	A	5529136	C	A	5529136	2	1	88	1	0	0	0	0	0	0	0	1	16895	842	30	3		3	UBQLN3	11	5529136	Silent	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	4261844	5529136	129477380	51	11566											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6567458	6567458	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DNHD1	NM_144666	exon21	c.T5289C	p.Y1763Y	CTTGTATGCCCCA	.	116	31	104	0	.	24	C	6567458	T	C	6567458	2	2	88	1	0	0	0	0	0	0	0	1	4668	1471	51	2		2	DNHD1	11	6567458	Silent	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	1038322	6567458	128439058	52	11567											
DKK3	27122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11987381	11987381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DKK3	NM_015881	exon7	c.A805T	p.S269C	GGCCACTGGCACA	.	62	19	58	0	.	721	A	11987381	T	A	11987381	3	1	88	1	0	0	0	0	1	0	0	0	4546	1580	55	4	255	4	DKK3	11	11987381	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	5419923	11987381	123019135	53	11568											
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33308240	33308240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	HIPK3	NM_001048200	exon2	c.G280A	p.V94I	ACAAAGGTCATAG	.	100	31	105	0	.	336	A	33308240	G	A	33308240	3	1	88	1	0	0	0	0	1	0	0	0	7118	1261	44	3	282	3	HIPK3	11	33308240	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	21320859	33308240	101698276	54	11569											
TPCN2	219931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68854594	68854594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TPCN2	NM_139075	exon24	c.G2100A	p.K700K	TCACAAGTGGGAC	.	69	22	67	0	.	90	A	68854594	G	A	68854594	2	1	88	1	0	0	0	0	0	0	0	1	16393	1020	36	3		3	TPCN2	11	68854594	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	35546354	68854594	66151922	55	11570											
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122774639	122774639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C11orf63	NM_024806	exon3	c.A351G	p.Q117Q	GCAACAACCAATA	.	66	24	86	0	.	93	G	122774639	A	G	122774639	2	3	88	1	0	0	0	0	0	0	0	1	1654	40	2	2		2	C11orf63	11	122774639	Silent	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	53920045	122774639	12231877	56	11571											
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1953666	1953666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CACNA2D4	NM_172364	exon25	c.G2372A	p.S791N	AACACGCTGGCCT	.	210	75	145	1	.	23	T	1953666	C	T	1953666	3	4	88	1	0	0	0	0	1	0	0	0	2551	797	28	3	1097	3	CACNA2D4	12	1953666	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		1953666	131898229	57	11572											
C1RL	51279	ucsc.edu;bcgsc.ca	37	12	7249174	7249174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C1RL	NM_016546	exon6	c.C1277T	p.T426M	CTTTGCGTCTCAT	.	206	73	262	2	.	91	A	7249174	G	A	7249174	3	1	88	1	0	0	0	0	1	0	0	0	1973	1145	40	1	190	1	C1RL	12	7249174	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	5295508	7249174	126602721	58	11573											
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26217450	26217450	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RASSF8	NM_007211	exon4	c.C123A	p.T41T	GTACACCCTTATA	.	104	32	163	0	.	90	A	26217450	C	A	26217450	2	1	88	1	0	0	0	0	0	0	0	1	13092	610	22	3		3	RASSF8	12	26217450	Silent	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	18968276	26217450	107634445	59	11574											
MRPS35	60488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27908279	27908279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MRPS35	NM_021821	exon8	c.G868A	p.E290K	GAAATTGAAGAGT	.	70	27	120	0	.	90	A	27908279	G	A	27908279	3	1	88	1	0	0	0	0	1	0	0	0	9844	1291	45	3	898	3	MRPS35	12	27908279	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	1690829	27908279	105943616	60	11575											
DDX11	1663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31249813	31249813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DDX11	NM_030653	exon17	c.G1651A	p.E551K	GCAGACGAGAGTC	.	183	67	164	0	.	229	A	31249813	G	A	31249813	3	1	88	1	0	0	0	0	1	0	0	0	4343	1059	37	1	1713	1	DDX11	12	31249813	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	3341534	31249813	102602082	61	11576											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88479875	88479875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CEP290	NM_025114	exon34	c.A4378C	p.I1460L	CCTTAATTTTCCT	.	48	16	47	0	.	96	G	88479875	T	G	88479875	3	3	88	1	0	0	0	0	1	0	0	0	3253	1493	52	5	3145	5	CEP290	12	88479875	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	57230062	88479875	45372020	62	11577											
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	93835657	93835657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBE2N	NM_003348	exon1	c.G4A	p.A2T	GCCCGGCCATCTT	.	139	57	115	0	.	659	T	93835657	C	T	93835657	3	4	88	1	0	0	0	0	1	0	0	0	16863	739	26	3	470	3	UBE2N	12	93835657	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	5355782	93835657	40016238	63	11578											
UNC119B	84747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121151187	121151187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UNC119B	NM_001080533	exon2	c.T355G	p.S119A	TGCGTTTCAGGTA	.	151	49	171	0	.	69	G	121151187	T	G	121151187	3	3	88	1	0	0	0	0	1	0	0	0	16980	1783	62	5	361	5	UNC119B	12	121151187	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	27315530	121151187	12700708	64	11579											
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121783834	121783834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANAPC5	NM_016237	exon4	c.398delG	p.G133fs	AACAAACCTACAA	.	92	19	125	0	.	290	-	121783834	C	-	121783834	7	5	88	1	0	1	0	1	0	0	0	0	605	521	18	0	1925	0	ANAPC5	12	121783834	Frame_Shift_Del	DEL	C	TCGA-DD-A4NG-01A-11D-A27I-10	632647	121783834	12068061	65	11580											
FLT3	2322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28626760	28626760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FLT3	NM_004119	exon5	c.A536G	p.Q179R	GCGTCCTGGTTTT	.	73	36	140	1	.	42117	C	28626760	T	C	28626760	3	2	88	1	0	0	0	0	1	0	0	0	5942	1580	55	2	2525	2	FLT3	13	28626760	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10		28626760	86543118	66	11581											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32850640	32850640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FRY	NM_023037	exon57	c.G8326A	p.V2776M	TTCAGTGTGTTAG	.	82	35	161	0	.	142	A	32850640	G	A	32850640	3	1	88	1	0	0	0	0	1	0	0	0	6063	1377	48	3	8552	3	FRY	13	32850640	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	4223880	32850640	82319238	67	11582											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	39886581	39886581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	THBS1	NM_003246	exon21	c.G3445A	p.G1149R	AGACTAGGGTTGT	.	95	29	108	0	.	653	A	39886581	G	A	39886581	3	1	88	1	0	0	0	0	1	0	0	0	15850	1000	35	3	3523	3	THBS1	15	39886581	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10		39886581	62644811	68	11583											
PKD1L2	114780	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	81142804	81142804	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PKD1L2	.	.	.	.	CCTCCTCGTAGTT	.	150	41	144	0	.	92	T	81142804	C	T	81142804	1	4	88	0	1	0	0	0	0	0	0	0	11965	893	31	1		1	PKD1L2	16	81142804	RNA	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		81142804	9211949	69	11584											
TMIGD1	388364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28656378	28656378	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TMIGD1	NM_206832	exon3	c.C252T	p.S84S	AGAGCTGGAATTG	.	176	47	186	0	.	90	A	28656378	G	A	28656378	2	1	88	1	0	0	0	0	0	0	0	1	16227	1335	47	3		3	TMIGD1	17	28656378	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10		28656378	52538832	70	11585											
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39596873	39596873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KRT38	NM_006771	exon1	c.A301G	p.N101D	GGCCATTCAGGGT	.	153	70	170	0	.	92	C	39596873	T	C	39596873	3	2	88	1	0	0	0	0	1	0	0	0	8475	1783	62	2	1097	2	KRT38	17	39596873	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	10940495	39596873	41598337	71	11586											
TANC2	26115	broad.mit.edu;bcgsc.ca	37	17	61315195	61315196	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TANC2	NM_025185	exon6	c.568_569insA	p.E190fs	TATTCTGAAAATG	.	42	9	55	0	.	24	A	61315196	-	A	61315195	7	5	88	1	0	1	1	0	0	0	0	0	15542	1291	45	0	590	0	TANC2	17	61315195	Frame_Shift_Ins	INS	-	TCGA-DD-A4NG-01A-11D-A27I-10	21718322	61315195	19880015	72	11587											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6693481	6693481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C3	NM_000064	exon25	c.G3172T	p.A1058S	TGAAGGCCAGCTG	.	32	9	39	0	.	95	A	6693481	C	A	6693481	3	1	88	1	0	0	0	0	1	0	0	0	2204	739	26	3	1887	3	C3	19	6693481	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10		6693481	52435502	73	11588											
AKAP8	10270	broad.mit.edu;mdanderson.org	37	19	15484748	15484748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	AKAP8	NM_005858	exon4	c.G220T	p.A74S	GCATGGCAGGGGC	.	32	9	26	0	.	290	A	15484748	C	A	15484748	3	1	88	1	0	0	0	0	1	0	0	0	457	710	25	3	1902	3	AKAP8	19	15484748	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	8791267	15484748	43644235	74	11589											
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17443815	17443815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANO8	NM_020959	exon5	c.C510T	p.R170R	CCAGAAGCGGATG	.	85	29	98	0	.	93	A	17443815	G	A	17443815	2	1	88	1	0	0	0	0	0	0	0	1	703	958	34	3		3	ANO8	19	17443815	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	1959067	17443815	41685168	75	11590											
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40742001	40742001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	AKT2	NM_001626	exon11	c.A971G	p.D324G	TCATTGTCCTCCA	.	86	24	64	0	.	978	C	40742001	T	C	40742001	3	2	88	1	0	0	0	0	1	0	0	0	480	1667	58	2	490	2	AKT2	19	40742001	Missense_Mutation	SNP	T	TCGA-DD-A4NG-01A-11D-A27I-10	23298186	40742001	18386982	76	11591											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	42837807	42837807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MEGF8	NM_001271938	exon2	c.G238T	p.E80X	GACACAGAGTGCA	.	115	35	120	0	.	23	T	42837807	G	T	42837807	4	4	88	1	0	0	0	0	0	1	0	0	9463	943	33	3	244	3	MEGF8	19	42837807	Nonsense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	2095806	42837807	16291176	77	11592											
EPS8L1	54869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55598913	55598913	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EPS8L1	NM_133180	exon20	c.A2103T	p.S701S	AGTGTCAGAGCTG	.	214	67	226	0	.	115	T	55598913	A	T	55598913	2	4	88	1	0	0	0	0	0	0	0	1	5195	175	7	4		4	EPS8L1	19	55598913	Silent	SNP	A	TCGA-DD-A4NG-01A-11D-A27I-10	12761106	55598913	3530070	78	11593											
NFS1	9054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34263098	34263098	+	Missense_Mutation	SNP	G	G	A	rs200454792		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NFS1	NM_021100	exon8	c.C817T	p.R273W	GGGGCCGGCGACG	.	160	81	131	0	G|0.999;A|0.000	92	A	34263098	G	A	34263098	3	1	88	1	0	0	0	0	1	0	0	0	10385	1115	39	1	580	1	NFS1	20	34263098	Missense_Mutation	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10		34263098	28762422	79	11594											
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35683995	35683995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RBL1	NM_183404	exon11	c.G1428A	p.M476I	CTGAACCATTACA	.	79	39	71	0	.	419	T	35683995	C	T	35683995	3	4	88	1	0	0	0	0	1	0	0	0	13109	594	21	3	1835	3	RBL1	20	35683995	Missense_Mutation	SNP	C	TCGA-DD-A4NG-01A-11D-A27I-10	1420897	35683995	27341525	80	11595											
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	62839416	62839416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G867A	p.E289E	GGAGGAGGAGGAA	.	80	14	68	0	.	704	A	62839416	G	A	62839416	2	1	88	1	0	0	0	0	0	0	0	1	10106	991	35	3		3	MYT1	20	62839416	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	27155421	62839416	186104	81	11596			1	11		2	2	19	G		4.767831e-05
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	62839434	62839434	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G885A	p.E295E	AGAGGAGGAGGAA	.	96	7	89	0	.	704	A	62839434	G	A	62839434	2	1	88	1	0	0	0	0	0	0	0	1	10106	991	35	3		3	MYT1	20	62839434	Silent	SNP	G	TCGA-DD-A4NG-01A-11D-A27I-10	18	62839434	186086	82	11597			1	11		2	2	19	G		4.767831e-05
C1QA	712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22965369	22965369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	C1QA	NM_015991	exon3	c.C207A	p.D69E	AGGAGACCAGGGG	.	63	10	62	0	.	90	A	22965369	C	A	22965369	3	1	89	1	0	0	0	0	1	0	0	0	1954	506	18	3	213	3	C1QA	1	22965369	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		22965369	226285252	1	11598											
RNF11	26994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51702468	51702468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RNF11	NM_014372	exon1	c.T40A	p.S14T	GACATCTCCCTGC	.	216	44	227	0	.	226	A	51702468	T	A	51702468	3	1	89	1	0	0	0	0	1	0	0	0	13424	1551	54	4	42	4	RNF11	1	51702468	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10	28737099	51702468	197548153	2	11599											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	118635840	118635840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SPAG17	NM_206996	exon8	c.T1112A	p.L371H	TTAATAAGCTGCA	.	173	13	117	0	.	158	T	118635840	A	T	118635840	3	4	89	1	0	0	0	0	1	0	0	0	14979	72	3	4	5723	4	SPAG17	1	118635840	Missense_Mutation	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10	66933372	118635840	130614781	3	11600											
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145273364	145273364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NOTCH2NL	NM_203458	exon3	c.C218G	p.S73C	TTGTGTCTCGACC	.	3638	161	2643	0	.	211	G	145273364	C	G	145273364	3	3	89	1	0	0	0	0	1	0	0	0	10549	913	32	4	224	4	NOTCH2NL	1	145273364	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	26637524	145273364	103977257	4	11601											
TTC24	164118	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	156551507	156551507	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TTC24	NM_001105669	exon2	c.C351T	p.G117G	ACACGGCGACCAA	.	228	30	136	0	.	46	T	156551507	C	T	156551507	2	4	89	1	0	0	0	0	0	0	0	1	16689	755	27	1		1	TTC24	1	156551507	Silent	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	11278143	156551507	92699114	5	11602											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200959773	200959773	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KIF21B	NM_017596	exon19	c.G2766T	p.R922R	AATGATCCGTCGC	.	183	20	95	0	.	96	A	200959773	C	A	200959773	2	1	89	1	0	0	0	0	0	0	0	1	8289	842	30	3		3	KIF21B	1	200959773	Silent	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	44408266	200959773	48290848	6	11603											
AKT3	10000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	243800994	243800994	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	AKT3	NM_001206729	exon6	c.480delG	p.G160fs	AACTTTCCCAAAA	.	59	22	31	0	.	1423	-	243800994	C	-	243800994	7	5	89	1	0	1	0	1	0	0	0	0	481	842	30	0	1043	0	AKT3	1	243800994	Frame_Shift_Del	DEL	C	TCGA-DD-A4NH-01A-11D-A27I-10	42841221	243800994	5449627	7	11604											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196740508	196740508	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DNAH7	NM_018897	exon38	c.C6177A	p.P2059P	CTCAATGGGAGGT	.	201	44	193	0	.	102	T	196740508	G	T	196740508	2	4	89	1	0	0	0	0	0	0	0	1	4606	1335	47	3		3	DNAH7	2	196740508	Silent	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10		196740508	46458865	8	11605											
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242004719	242004719	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SNED1	NM_001080437	exon21	c.C2718T	p.L906L	AGAGCTCTTCCCA	.	112	13	81	0	.	72	T	242004719	C	T	242004719	2	4	89	1	0	0	0	0	0	0	0	1	14845	900	32	3		3	SNED1	2	242004719	Silent	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	45264211	242004719	1194654	9	11606											
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	48610139	48610139	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	COL7A1	NM_000094	exon87	c.A6865T	p.K2289X	CTCCTTTAGGTCC	.	152	19	139	0	.	160	A	48610139	T	A	48610139	4	1	89	1	0	0	0	0	0	1	0	0	3704	1763	61	4	2097	4	COL7A1	3	48610139	Nonsense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10		48610139	149412291	10	11607											
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67054129	67054129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KBTBD8	NM_032505	exon3	c.A738T	p.E246D	GATGGAAGATACC	.	53	12	65	0	.	587	T	67054129	A	T	67054129	3	4	89	1	0	0	0	0	1	0	0	0	7999	69	3	4	748	4	KBTBD8	3	67054129	Missense_Mutation	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10	18443990	67054129	130968301	11	11608											
DCBLD2	131566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98541530	98541530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DCBLD2	NM_080927	exon5	c.C679T	p.P227S	CATGAGGAATTGT	.	298	59	298	1	.	92	A	98541530	G	A	98541530	3	1	89	1	0	0	0	0	1	0	0	0	4281	1174	41	3	1696	3	DCBLD2	3	98541530	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	31487401	98541530	99480900	12	11609											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151166486	151166486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	IGSF10	NM_178822	exon4	c.G1283T	p.W428L	ATTAACCAAGAGG	.	81	13	62	0	.	102	A	151166486	C	A	151166486	3	1	89	1	0	0	0	0	1	0	0	0	7597	595	21	3	6648	3	IGSF10	3	151166486	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	52624956	151166486	46855944	13	11610											
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183960448	183960448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_005787	exon9	c.C1171T	p.L391F	CGATGAGCCCCAG	.	214	30	210	1	.	.	A	183960448	G	A	183960448	3	1	89	1	0	0	0	0	1	0	0	0	520	971	34	3	149	3	ALG3	3	183960448	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	32793962	183960448	14061982	14	11611											
ATP10D	57205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47517533	47517533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ATP10D	NM_020453	exon3	c.T331C	p.W111R	CTGAACTGGGTAC	.	142	18	180	0	.	93	C	47517533	T	C	47517533	3	2	89	1	0	0	0	0	1	0	0	0	1118	1580	55	2	337	2	ATP10D	4	47517533	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10		47517533	143636743	15	11612											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79238646	79238646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FRAS1	NM_001166133	exon17	c.C1944A	p.D648E	CTCTGACCATGGA	.	93	16	84	0	.	68	A	79238646	C	A	79238646	3	1	89	1	0	0	0	0	1	0	0	0	6042	506	18	3	2010	3	FRAS1	4	79238646	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	31721113	79238646	111915630	16	11613											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1409893	1409893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SLC6A3	NM_001044	exon10	c.C1341T	p.L447L	CGTGAAGAGCTCA	.	198	35	169	0	.	157	A	1409893	G	A	1409893	2	1	89	1	0	0	0	0	0	0	0	1	14685	929	33	3		3	SLC6A3	5	1409893	Silent	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10		1409893	179505367	17	11614											
PCDHGC5	56097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140869878	140869878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PCDHGC5	NM_018929	exon1	c.C1071T	p.N357N	GGCCAACCCTGTC	.	151	37	138	0	.	25	T	140869878	C	T	140869878	2	4	89	1	0	0	0	0	0	0	0	1	11571	506	18	3		3	PCDHGC5	5	140869878	Silent	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	139459985	140869878	40045382	18	11615											
ZNF454	285676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178391688	178391688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF454	NM_001178089	exon5	c.A283G	p.T95A	AAATCTACTGTCA	.	124	37	147	0	.	93	G	178391688	A	G	178391688	3	3	89	1	0	0	0	0	1	0	0	0	17920	391	14	2	297	2	ZNF454	5	178391688	Missense_Mutation	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10	37521810	178391688	2523572	19	11616											
HLA-DMB	3109	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32904957	32904957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	HLA-DMB	NM_002118	exon3	c.G614A	p.R205Q	CAGTCCCGAAGGA	.	248	67	167	1	.	90	T	32904957	C	T	32904957	3	4	89	1	0	0	0	0	1	0	0	0	7199	652	23	1	193	1	HLA-DMB	6	32904957	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		32904957	138210110	20	11617											
PRIM2	5558	broad.mit.edu;mdanderson.org	37	6	57393119	57393119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PRIM2	.	.	.	.	CATTCCTACACTA	.	30	4	25	0	.	227	A	57393119	T	A	57393119	3	1	89	1	0	0	0	0	1	0	0	0	12491	1522	53	4	799	4	PRIM2	6	57393119	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10	24488162	57393119	113721948	21	11618											
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104897822	104897822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RIMS2	NM_001100117	exon4	c.G995T	p.R332L	AGTCACGCTACCG	.	94	12	85	0	.	279	T	104897822	G	T	104897822	3	4	89	1	0	0	0	0	1	0	0	0	13368	1087	38	1	1135	1	RIMS2	8	104897822	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10		104897822	41466200	22	11619											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27206595	27206595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TEK	NM_000459	exon15	c.G2380C	p.V794L	CCAGCTGTGCAGT	.	109	12	101	0	.	1584	C	27206595	G	C	27206595	3	2	89	1	0	0	0	0	1	0	0	0	15748	1377	48	4	2438	4	TEK	9	27206595	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10		27206595	114006836	23	11620											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79983032	79983032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	VPS13A	NM_001018038	exon62	c.A8533C	p.I2845L	GAAGTCATAAGAC	.	44	8	44	0	.	161	C	79983032	A	C	79983032	3	2	89	1	0	0	0	0	1	0	0	0	17186	217	8	5	8779	5	VPS13A	9	79983032	Missense_Mutation	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10	52776437	79983032	61230399	24	11621											
MED27	9442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134738510	134738510	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MED27	NM_004269	exon7	c.C741T	p.T247T	GGCAGTGGTGGCA	.	180	32	159	0	.	69	A	134738510	G	A	134738510	2	1	89	1	0	0	0	0	0	0	0	1	9445	1335	47	3		3	MED27	9	134738510	Silent	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	54755478	134738510	6474921	25	11622											
RPL7A	6130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136216457	136216457	+	Missense_Mutation	SNP	G	G	A	rs11549070		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RPL7A	NM_000972	exon3	c.G176A	p.R59H	GGCCCCGCTATAT	.	170	43	112	0	.	90	A	136216457	G	A	136216457	3	1	89	1	0	0	0	0	1	0	0	0	13600	1087	38	1	186	1	RPL7A	9	136216457	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	1477947	136216457	4996974	26	11623											
GPRIN2	9721	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	46999762	46999762	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	GPRIN2	NM_014696	exon3	c.C882T	p.A294A	CTGTGCCCACCTT	.	370	24	312	1	.	90	T	46999762	C	T	46999762	2	4	89	1	0	0	0	0	0	0	0	1	6730	610	22	3		3	GPRIN2	10	46999762	Silent	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		46999762	88534985	27	11624											
BICC1	80114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	60573612	60573612	+	Missense_Mutation	SNP	G	G	C	rs111922761	byfrequency;alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	BICC1	NM_001080512	exon18	c.G2399C	p.R800P	TTTCACGGTCCAA	.	248	45	199	0	G|0.992;A|0.008	72	C	60573612	G	C	60573612	3	2	89	1	0	0	0	0	1	0	0	0	1427	1116	39	4	2469	4	BICC1	10	60573612	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	13573850	60573612	74961135	28	11625											
TACC2	10579	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123844727	123844727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TACC2	NM_206862	exon4	c.G2712T	p.Q904H	AAGTCAGCTCCCC	.	190	35	137	1	.	296	T	123844727	G	T	123844727	3	4	89	1	0	0	0	0	1	0	0	0	15499	962	34	3	2722	3	TACC2	10	123844727	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	63271115	123844727	11690020	29	11626											
OAT	4942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126089485	126089485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	OAT	NM_000274	exon9	c.G1083A	p.M361I	TAGCTTCATGAGT	.	144	31	118	0	.	68	T	126089485	C	T	126089485	3	4	89	1	0	0	0	0	1	0	0	0	10803	826	29	3	244	3	OAT	10	126089485	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	2244758	126089485	9445262	30	11627											
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64900425	64900425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SYVN1	NM_172230	exon4	c.T346G	p.F116V	AGTGGAAACATTT	.	176	28	154	0	.	91	C	64900425	A	C	64900425	3	2	89	1	0	0	0	0	1	0	0	0	15484	14	1	5	1559	5	SYVN1	11	64900425	Missense_Mutation	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10		64900425	70106091	31	11628											
C11orf73	51501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86048470	86048470	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	C11orf73	NM_016401	exon3	c.A318G	p.P106P	AACTCCATCTGTT	.	155	35	132	0	.	90	G	86048470	A	G	86048470	2	3	89	1	0	0	0	0	0	0	0	1	1661	204	8	2		2	C11orf73	11	86048470	Silent	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10	21148045	86048470	48958046	32	11629											
TMEM218	219854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124971201	124971201	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TMEM218	NM_001258242	exon5	c.216-2A>T	.	AGAACCTGGGGTT	.	33	9	38	0	.	68	A	124971201	T	A	124971201	5	1	89	1	0	0	0	0	0	0	1	0	16138	1594	55	4	246	4	TMEM218	11	124971201	Splice_Site	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10	38922731	124971201	10035315	33	11630											
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29920979	29920979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TMTC1	NM_001193451	exon2	c.C332T	p.P111L	TAGAATGGGTTCA	.	80	11	77	0	.	90	A	29920979	G	A	29920979	3	1	89	1	0	0	0	0	1	0	0	0	16257	1348	47	3	2384	3	TMTC1	12	29920979	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10		29920979	103930916	34	11631											
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58001298	58001298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DTX3	NM_178502	exon5	c.C652T	p.R218W	AATGGGCGGATGC	.	407	63	249	0	.	1083	T	58001298	C	T	58001298	3	4	89	1	0	0	0	0	1	0	0	0	4795	759	27	1	658	1	DTX3	12	58001298	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	28080319	58001298	75850597	35	11632											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101490394	101490394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ANO4	NM_178826	exon18	c.T1714A	p.S572T	AACAGCTCCACAT	.	172	23	127	0	.	96	A	101490394	T	A	101490394	3	1	89	1	0	0	0	0	1	0	0	0	699	1551	54	4	1780	4	ANO4	12	101490394	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10	43489096	101490394	32361501	36	11633											
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45391660	45391660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DUOX2	NM_014080	exon26	c.G3436A	p.A1146T	TGACTGCGTGGCC	.	92	16	81	0	.	95	T	45391660	C	T	45391660	3	4	89	1	0	0	0	0	1	0	0	0	4801	768	27	1	1246	1	DUOX2	15	45391660	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		45391660	57139732	37	11634											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2134406	2134406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TSC2	NM_000548	exon34	c.C4183T	p.Q1395X	ACTCTGCAGGACA	.	60	14	84	0	.	1908	T	2134406	C	T	2134406	4	4	89	1	0	0	0	0	0	1	0	0	16603	711	25	3	4313	3	TSC2	16	2134406	Nonsense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		2134406	88220347	38	11635											
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29889651	29889651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SEZ6L2	NM_001243332	exon10	c.G1669A	p.V557M	CGTGCACGCCCCA	.	125	34	120	0	.	92	T	29889651	C	T	29889651	3	4	89	1	0	0	0	0	1	0	0	0	14144	536	19	1	1138	1	SEZ6L2	16	29889651	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	27755245	29889651	60465102	39	11636											
RBL2	5934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	53524210	53524210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RBL2	NM_005611	exon22	c.T3418C	p.X1140R	TCCCACTGAGGTT	.	106	23	115	0	.	841	C	53524210	T	C	53524210	3	2	89	1	0	0	0	0	1	0	0	0	13110	1593	55	2	3504	2	RBL2	16	53524210	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10	23634559	53524210	36830543	40	11637											
STAT5B	6777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40384099	40384100	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	STAT5B	NM_012448	exon2	c.47_48insC	p.H16fs	ATCTGATGAAGGG	.	242	48	199	0	.	850	G	40384100	-	G	40384099	7	5	89	1	0	1	1	0	0	0	0	0	15268	1464	51	0	2388	0	STAT5B	17	40384099	Frame_Shift_Ins	INS	-	TCGA-DD-A4NH-01A-11D-A27I-10		40384099	40811111	41	11638											
PGS1	9489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76395500	76395500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PGS1	NM_024419	exon5	c.583delT	p.F195fs	TCCCTCTTTCACA	.	180	46	125	0	.	90	-	76395500	T	-	76395500	7	5	89	1	0	1	0	1	0	0	0	0	11808	1609	56	0	601	0	PGS1	17	76395500	Frame_Shift_Del	DEL	T	TCGA-DD-A4NH-01A-11D-A27I-10	36011401	76395500	4799710	42	11639											
SMAD7	4092	broad.mit.edu;mdanderson.org	37	18	46448256	46448256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SMAD7	NM_005904	exon4	c.G767A	p.G256E	CGATCCCCAGGCT	.	54	10	43	0	.	414	T	46448256	C	T	46448256	3	4	89	1	0	0	0	0	1	0	0	0	14763	623	22	3	517	3	SMAD7	18	46448256	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		46448256	31628992	43	11640											
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288111	288111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PPAP2C	NM_177543	exon2	c.G176A	p.C59Y	TCCCCGCAGTAAA	.	272	38	245	0	.	90	T	288111	C	T	288111	3	4	89	1	0	0	0	0	1	0	0	0	12292	710	25	3	773	3	PPAP2C	19	288111	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10		288111	58840872	44	11641											
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15917988	15917988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	OR10H1	NM_013940	exon1	c.G860A	p.S287N	ATGGGGCTGAGGA	.	310	54	304	0	.	68	T	15917988	C	T	15917988	3	4	89	1	0	0	0	0	1	0	0	0	10905	797	28	3	100	3	OR10H1	19	15917988	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	15629877	15917988	43210995	45	11642											
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37045633	37045633	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF529	NM_001145649	exon5	c.T174C	p.S58S	CTGAGCAGAATCC	.	148	35	146	0	.	67	G	37045633	A	G	37045633	2	3	89	1	0	0	0	0	0	0	0	1	17967	175	7	2		2	ZNF529	19	37045633	Silent	SNP	A	TCGA-DD-A4NH-01A-11D-A27I-10	21127645	37045633	22083350	46	11643											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40540905	40540905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF780B	NM_001005851	exon5	c.G1861A	p.A621T	TGAAGGCCTTGCC	.	144	26	134	0	.	47	T	40540905	C	T	40540905	3	4	89	1	0	0	0	0	1	0	0	0	18150	739	26	3	644	3	ZNF780B	19	40540905	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	3495272	40540905	18588078	47	11644											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55450802	55450802	+	Missense_Mutation	SNP	C	C	T	rs146205567	alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NLRP7	NM_001127255	exon4	c.G1385A	p.G462D	TAGCAGCCTTTGG	.	220	29	162	0	C|1.000;A|0.000	291	T	55450802	C	T	55450802	3	4	89	1	0	0	0	0	1	0	0	0	10482	739	26	3	1760	3	NLRP7	19	55450802	Missense_Mutation	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	14909897	55450802	3678181	48	11645											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	49508933	49508934	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ADNP	NM_015339	exon5	c.2317_2318del	p.773_773del	AAATACTTTGTTA	.	202	43	184	0	.	92	-	49508934	TT	-	49508933	7	5	89	1	0	1	0	1	0	0	0	0	323	1609	56	0	994	0	ADNP	20	49508933	Frame_Shift_Del	DEL	TT	TCGA-DD-A4NH-01A-11D-A27I-10		49508933	13516587	49	11646											
HRH3	11255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60791450	60791450	+	Missense_Mutation	SNP	G	G	A	rs200015061		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	HRH3	NM_007232	exon3	c.C950T	p.P317L	GAGCGCGGCCTCT	.	25	9	32	0	G|0.999;A|0.001	90	A	60791450	G	A	60791450	3	1	89	1	0	0	0	0	1	0	0	0	7357	1116	39	1	391	1	HRH3	20	60791450	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	11282517	60791450	2234070	50	11647											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60887087	60887087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LAMA5	NM_005560	exon70	c.C9524T	p.S3175F	TGCAGGGACACCT	.	57	16	61	0	.	93	A	60887087	G	A	60887087	3	1	89	1	0	0	0	0	1	0	0	0	8609	1174	41	3	1607	3	LAMA5	20	60887087	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	95637	60887087	2138433	51	11648											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50658924	50658924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	BMP15	NM_005448	exon2	c.T496A	p.S166T	TTCCCTTCCTCAG	.	379	56	315	0	.	132	A	50658924	T	A	50658924	3	1	89	1	0	0	0	0	1	0	0	0	1458	1783	62	4	502	4	BMP15	23	50658924	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10		50658924	104611636	52	11649											
RIBC1	158787	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53457369	53457369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RIBC1	NM_001031745	exon7	c.G689A	p.R230H	GTCAGCGCTGTGA	.	342	60	312	1	.	130	A	53457369	G	A	53457369	3	1	89	1	0	0	0	0	1	0	0	0	13352	1087	38	1	742	1	RIBC1	23	53457369	Missense_Mutation	SNP	G	TCGA-DD-A4NH-01A-11D-A27I-10	2798445	53457369	101813191	53	11650											
DNASE1L1	1774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153633194	153633194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DNASE1L1	NM_006730	exon4	c.A286G	p.M96V	TCTCCATGTAGGT	.	293	58	233	0	.	554	C	153633194	T	C	153633194	3	2	89	1	0	0	0	0	1	0	0	0	4661	1464	51	2	642	2	DNASE1L1	23	153633194	Missense_Mutation	SNP	T	TCGA-DD-A4NH-01A-11D-A27I-10	100175825	153633194	1637366	54	11651											
MPP1	4354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154010040	154010040	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MPP1	NM_002436	exon10	c.G984A	p.G328G	CTCCTTCCCATCT	.	361	64	254	0	.	132	T	154010040	C	T	154010040	2	4	89	1	0	0	0	0	0	0	0	1	9733	842	30	3		3	MPP1	23	154010040	Silent	SNP	C	TCGA-DD-A4NH-01A-11D-A27I-10	376846	154010040	1260520	55	11652											
PTCHD2	57540	ucsc.edu;bcgsc.ca	37	1	11589684	11589684	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTCHD2	NM_020780	exon14	c.T2870G	p.L957R	GCTGCCTGCTTAG	.	415	126	288	2	.	209	G	11589684	T	G	11589684	3	3	90	1	0	0	0	0	1	0	0	0	12733	1580	55	5	2920	5	PTCHD2	1	11589684	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		11589684	237660937	1	11653											
MAN1C1	57134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	25944335	25944335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MAN1C1	NM_020379	exon1	c.G47A	p.G16E	CGTGGGGGCTGCG	.	53	20	69	0	.	91	A	25944335	G	A	25944335	3	1	90	1	0	0	0	0	1	0	0	0	9213	1232	43	3	49	3	MAN1C1	1	25944335	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	14354651	25944335	223306286	2	11654											
FGGY	55277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	59844499	59844499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FGGY	NM_001113411	exon5	c.G544A	p.V182I	ACAGGTGTCACAG	.	80	5	71	0	.	69	A	59844499	G	A	59844499	3	1	90	1	0	0	0	0	1	0	0	0	5871	1377	48	3	558	3	FGGY	1	59844499	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	33900164	59844499	189406122	3	11655											
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	146757007	146757008	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHD1L	NM_004284	exon17	c.1861_1862insT	p.I621fs	GTTCTCATCCCAG	.	351	40	149	0	.	231	T	146757008	-	T	146757007	7	5	90	1	0	1	1	0	0	0	0	0	3324	217	8	0	1927	0	CHD1L	1	146757007	Frame_Shift_Ins	INS	-	TCGA-DD-A4NI-01A-11D-A27I-10	86912508	146757007	102493614	4	11656											
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155932460	155932460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF2	NM_001162383	exon9	c.G1025A	p.C342Y	CGGCTGCAGAACT	.	287	22	181	0	.	228	T	155932460	C	T	155932460	3	4	90	1	0	0	0	0	1	0	0	0	903	710	25	3	1991	3	ARHGEF2	1	155932460	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	9175453	155932460	93318161	5	11657											
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156937793	156937793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF11	NM_198236	exon11	c.T949G	p.S317A	CGGTTGAGGGGAC	.	173	37	152	0	.	233	C	156937793	A	C	156937793	3	2	90	1	0	0	0	0	1	0	0	0	896	304	11	5	3863	5	ARHGEF11	1	156937793	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	1005333	156937793	92312828	6	11658											
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	157494326	157494326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FCRL5	NM_031281	exon10	c.T1982A	p.L661H	AAGGTGAGGATGG	.	271	16	140	0	.	156	T	157494326	A	T	157494326	3	4	90	1	0	0	0	0	1	0	0	0	5798	304	11	4	983	4	FCRL5	1	157494326	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	556533	157494326	91756295	7	11659											
SERPINC1	462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173880936	173880936	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SERPINC1	NM_000488	exon4	c.624+1G>A	.	AACTCACCTTGAA	.	180	71	126	0	.	227	T	173880936	C	T	173880936	5	4	90	1	0	0	0	0	0	0	1	0	14109	521	18	3	789	3	SERPINC1	1	173880936	Splice_Site	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	16386610	173880936	75369685	8	11660											
NPL	80896	hgsc.bcm.edu;broad.mit.edu	37	1	182794948	182794948	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NPL	NM_001200052	exon11	c.C686G	p.S229X	TGTTGTCAAACTA	.	44	5	20	0	.	92	G	182794948	C	G	182794948	4	3	90	1	0	0	0	0	0	1	0	0	10585	813	29	4	809	4	NPL	1	182794948	Nonsense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	8914012	182794948	66455673	9	11661											
NFASC	23114	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204970404	204970404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFASC	NM_001005388	exon26	c.G3126C	p.E1042D	GGTTGAGTACATC	.	297	25	198	2	.	139	C	204970404	G	C	204970404	3	2	90	1	0	0	0	0	1	0	0	0	10359	1020	36	4	3633	4	NFASC	1	204970404	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	22175456	204970404	44280217	10	11662											
PFKFB2	5208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207241653	207241653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PFKFB2	NM_001018053	exon10	c.C986T	p.A329V	TTGATGCTGTGAG	.	89	6	48	0	.	91	T	207241653	C	T	207241653	3	4	90	1	0	0	0	0	1	0	0	0	11761	811	28	3	1020	3	PFKFB2	1	207241653	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	2271249	207241653	42008968	11	11663											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216040372	216040372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USH2A	NM_206933	exon44	c.T8822C	p.I2941T	ACGTCGATGGCTG	.	218	22	127	0	.	115	G	216040372	A	G	216040372	3	3	90	1	0	0	0	0	1	0	0	0	17033	333	12	2	6902	2	USH2A	1	216040372	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	8798719	216040372	33210249	12	11664											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	216371756	216371756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USH2A	NM_007123	exon18	c.G3982A	p.G1328S	CCAAGCCAGTGAT	.	191	13	115	0	.	115	T	216371756	C	T	216371756	3	4	90	1	0	0	0	0	1	0	0	0	17033	594	21	3	11860	3	USH2A	1	216371756	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	331384	216371756	32878865	13	11665											
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220174520	220174520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EPRS	NM_004446	exon17	c.G2141T	p.G714V	TTTGACCCTGATG	.	249	65	123	0	.	92	A	220174520	C	A	220174520	3	1	90	1	0	0	0	0	1	0	0	0	5191	623	22	3	2461	3	EPRS	1	220174520	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3802764	220174520	29076101	14	11666											
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229596501	229596502	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP133	NM_018230	exon20	c.2701_2702insT	p.L901fs	GGAAGAGAAAGTC	.	130	33	65	0	.	271	A	229596502	-	A	229596501	7	5	90	1	0	1	1	0	0	0	0	0	10754	942	33	0	797	0	NUP133	1	229596501	Frame_Shift_Ins	INS	-	TCGA-DD-A4NI-01A-11D-A27I-10	9421981	229596501	19654120	15	11667											
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236850058	236850058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACTN2	NM_001103	exon1	c.G85A	p.D29N	GACCGCGACCTGC	.	157	11	92	0	.	95	A	236850058	G	A	236850058	3	1	90	1	0	0	0	0	1	0	0	0	205	1058	37	1	87	1	ACTN2	1	236850058	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	7253557	236850058	12400563	16	11668											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247599337	247599337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NLRP3	NM_004895	exon6	c.A2564G	p.H855R	CCAGCCATTCCCT	.	277	48	138	0	.	674	G	247599337	A	G	247599337	3	3	90	1	0	0	0	0	1	0	0	0	10478	217	8	2	2586	2	NLRP3	1	247599337	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	10749279	247599337	1651284	17	11669											
OR1C1	26188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247921053	247921053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR1C1	NM_012353	exon1	c.G656T	p.G219V	ATAAGTCCATAAG	.	180	39	119	0	.	91	A	247921053	C	A	247921053	3	1	90	1	0	0	0	0	1	0	0	0	10952	855	30	3	290	3	OR1C1	1	247921053	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	321716	247921053	1329568	18	11670											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	33246001	33246001	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LTBP1	NM_206943	exon3	c.T591C	p.N197N	TCAGAATGGAGGG	.	133	8	85	0	.	230	C	33246001	T	C	33246001	2	2	90	1	0	0	0	0	0	0	0	1	9073	1461	51	2		2	LTBP1	2	33246001	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		33246001	209953372	19	11671											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39249927	39249927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SOS1	NM_005633	exon10	c.A1642G	p.S548G	GTGTACTCCGGTA	.	123	43	69	0	.	851	C	39249927	T	C	39249927	3	2	90	1	0	0	0	0	1	0	0	0	14936	1551	54	2	2415	2	SOS1	2	39249927	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	6003926	39249927	203949446	20	11672											
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50464017	50464017	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NRXN1	NM_001135659	exon19	c.G3576T	p.L1192L	TATGGCCAGTCTG	.	268	71	196	1	.	92	A	50464017	C	A	50464017	2	1	90	1	0	0	0	0	0	0	0	1	10665	581	21	3		3	NRXN1	2	50464017	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	11214090	50464017	192735356	21	11673											
B3GNT2	10678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62449528	62449528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	B3GNT2	NM_006577	exon2	c.A173T	p.Y58F	AGGCATACTGGAA	.	115	12	101	0	.	23	T	62449528	A	T	62449528	3	4	90	1	0	0	0	0	1	0	0	0	1257	391	14	4	175	4	B3GNT2	2	62449528	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	11985511	62449528	180749845	22	11674											
AUP1	550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74754135	74754135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AUP1	NM_181575	exon11	c.A1129G	p.K377E	AAGACTTGGCAAA	.	105	5	54	0	.	90	C	74754135	T	C	74754135	3	2	90	1	0	0	0	0	1	0	0	0	1220	1821	63	2	111	2	AUP1	2	74754135	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	12304607	74754135	168445238	23	11675											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102836404	102836404	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IL1RL2	NM_003854	exon8	c.A918G	p.K306K	AGTGAAAATGGAA	.	156	65	93	0	.	92	G	102836404	A	G	102836404	2	3	90	1	0	0	0	0	0	0	0	1	7664	11	1	2		2	IL1RL2	2	102836404	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	28082269	102836404	140362969	24	11676											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	121747481	121747481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GLI2	NM_005270	exon13	c.T3991A	p.S1331T	GCAGCCTCCATGA	.	181	10	162	0	.	954	A	121747481	T	A	121747481	3	1	90	1	0	0	0	0	1	0	0	0	6438	1551	54	4	4041	4	GLI2	2	121747481	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	18911077	121747481	121451892	25	11677											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137990568	137990568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	THSD7B	.	.	.	.	GGGGCCCTTGTTC	.	344	86	227	1	.	75	T	137990568	C	T	137990568	3	4	90	1	0	0	0	0	1	0	0	0	15877	681	24	3	1952	3	THSD7B	2	137990568	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	16243087	137990568	105208805	26	11678											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	148657133	148657133	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACVR2A	NM_001616	exon3	c.C370T	p.Q124X	GTCACACAGCGTA	.	55	17	19	0	.	831	T	148657133	C	T	148657133	4	4	90	1	0	0	0	0	0	1	0	0	223	479	17	3	380	3	ACVR2A	2	148657133	Nonsense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	10666565	148657133	94542240	27	11679											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu	37	2	178098968	178098968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFE2L2	NM_006164	exon2	c.A77C	p.Q26P	ATATCTTGCCTCC	.	64	4	34	0	.	90	G	178098968	T	G	178098968	3	3	90	1	0	0	0	0	1	0	0	0	10368	1812	63	5	1756	5	NFE2L2	2	178098968	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	29441835	178098968	65100405	28	11680											
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189927932	189927932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	COL5A2	NM_000393	exon27	c.G1835A	p.G612E	ATGCTCCCGGGCT	.	41	14	19	0	.	92	T	189927932	C	T	189927932	3	4	90	1	0	0	0	0	1	0	0	0	3697	623	22	3	2776	3	COL5A2	2	189927932	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	11828964	189927932	53271441	29	11681											
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191159323	191159323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HIBCH	NM_014362	exon4	c.A253G	p.I85V	TTATAATGATCAG	.	81	8	57	0	.	90	C	191159323	T	C	191159323	3	2	90	1	0	0	0	0	1	0	0	0	7100	1464	51	2	951	2	HIBCH	2	191159323	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	1231391	191159323	52040050	30	11682											
PECR	55825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	216946374	216946397	+	In_Frame_Del	DEL	CGATGCCCGTGGCCCCGCCGGTGA	CGATGCCCGTGGCCCCGCCGGTGA	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	CGATGCCCGTGGCCCCGCCGGTGA	CGATGCCCGTGGCCCCGCCGGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PECR	NM_018441	exon1	c.68_91del	p.23_31del	CTTTTCCGATGCC	.	227	42	184	0	.	90	-	216946397	CGATGCCCGTGGCCCCGCCGGTGA	-	216946374	7	5	90	1	0	1	0	1	0	0	0	0	11717	661	23	0	852	0	PECR	2	216946374	In_Frame_Del	DEL	CGATGCCCGTGGCCCCGCCGGTGA	TCGA-DD-A4NI-01A-11D-A27I-10	25787051	216946374	26252999	31	11683											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220432567	220432567	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OBSL1	NM_001173431	exon3	c.G1407T	p.P469P	GATGACCGGCAGC	.	276	109	257	1	.	71	A	220432567	C	A	220432567	2	1	90	1	0	0	0	0	0	0	0	1	10813	639	23	1		1	OBSL1	2	220432567	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3486193	220432567	22766806	32	11684											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230632438	230632438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TRIP12	NM_004238	exon41	c.A5811T	p.T1937T	GACAATTGTCAAA	.	71	18	37	0	.	572	A	230632438	T	A	230632438	2	1	90	1	0	0	0	0	0	0	0	1	16553	1799	63	4		4	TRIP12	2	230632438	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	10199871	230632438	12566935	33	11685											
ATG4B	23192	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242592932	242592932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_178326	exon4	c.A190G	p.T64A	GGGGGGACAGGCC	.	204	42	207	2	.	.	G	242592932	A	G	242592932	3	3	90	1	0	0	0	0	1	0	0	0	1097	275	10	2	204	2	ATG4B	2	242592932	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	11960494	242592932	606441	34	11686											
CHL1	10752	bcgsc.ca;mdanderson.org	37	3	433400	433400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHL1	NM_001253388	exon21	c.A2834C	p.K945T	TTGATAAAGACAC	.	66	21	41	1	.	583	C	433400	A	C	433400	3	2	90	1	0	0	0	0	1	0	0	0	3349	14	1	5	2916	5	CHL1	3	433400	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10		433400	197589030	35	11687											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38138132	38138132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DLEC1	NM_007337	exon15	c.A2244T	p.K748N	GGTGAAAGGCTCA	.	133	48	90	0	.	161	T	38138132	A	T	38138132	3	4	90	1	0	0	0	0	1	0	0	0	4552	69	3	4	2302	4	DLEC1	3	38138132	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	37704732	38138132	159884298	36	11688											
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38622799	38622799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SCN5A	NM_001160160	exon17	c.G2851A	p.D951N	CCTCATCAGGGGC	.	316	29	219	0	.	98	T	38622799	C	T	38622799	3	4	90	1	0	0	0	0	1	0	0	0	13922	826	29	3	3247	3	SCN5A	3	38622799	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	484667	38622799	159399631	37	11689											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	283	83	182	0	.	24361	C	41266110	A	C	41266110	3	2	90	1	0	0	0	0	1	0	0	0	4016	217	8	5	113	5	CTNNB1	3	41266110	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	2643311	41266110	156756320	38	11690											
DHX30	22907	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47888778	47888778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DHX30	NM_138615	exon12	c.G1945A	p.A649T	GAATGCGCACTCG	.	298	20	248	1	.	228	A	47888778	G	A	47888778	3	1	90	1	0	0	0	0	1	0	0	0	4504	1087	38	1	1994	1	DHX30	3	47888778	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	6622668	47888778	150133652	39	11691											
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52824922	52824922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ITIH1	NM_002215	exon20	c.A2479G	p.T827A	GCCCGGACGCACG	.	152	45	152	0	.	93	G	52824922	A	G	52824922	3	3	90	1	0	0	0	0	1	0	0	0	7903	275	10	2	2557	2	ITIH1	3	52824922	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	4936144	52824922	145197508	40	11692											
SYNPR	132204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	63594864	63594864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001130003	exon5	c.G472A	p.G158R	GCAAAAGGACTGT	.	219	64	172	1	.	.	A	63594864	G	A	63594864	3	1	90	1	0	0	0	0	1	0	0	0	15456	1001	35	3	518	3	SYNPR	3	63594864	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	10769942	63594864	134427566	41	11693											
KIAA1407	57577	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113753775	113753775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIAA1407	NM_020817	exon6	c.A815C	p.K272T	TACATTTTCCATG	.	109	38	79	1	.	92	G	113753775	T	G	113753775	3	3	90	1	0	0	0	0	1	0	0	0	8229	1841	64	5	2043	5	KIAA1407	3	113753775	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	50158911	113753775	84268655	42	11694											
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122418685	122418685	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PARP14	NM_017554	exon6	c.A1284T	p.T428T	TGATACACTTAAG	.	140	31	87	0	.	525	T	122418685	A	T	122418685	2	4	90	1	0	0	0	0	0	0	0	1	11458	146	6	4		4	PARP14	3	122418685	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	8664910	122418685	75603745	43	11695											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	124592297	124592297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ITGB5	NM_002213	exon2	c.A152G	p.K51R	ACCTCTTTGGAGC	.	172	9	147	0	.	227	C	124592297	T	C	124592297	3	2	90	1	0	0	0	0	1	0	0	0	7898	1841	64	2	2303	2	ITGB5	3	124592297	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	2173612	124592297	73430133	44	11696											
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126062722	126062722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KLF15	NM_014079	exon3	c.G1099A	p.E367K	ACAGCTCGTCAGA	.	74	32	56	0	.	91	T	126062722	C	T	126062722	3	4	90	1	0	0	0	0	1	0	0	0	8343	893	31	1	155	1	KLF15	3	126062722	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	1470425	126062722	71959708	45	11697											
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193029676	193029676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP13A5	NM_198505	exon20	c.T2374C	p.C792R	GGTAACAGCTTCC	.	176	29	92	0	.	144	G	193029676	A	G	193029676	3	3	90	1	0	0	0	0	1	0	0	0	1127	188	7	2	1324	2	ATP13A5	3	193029676	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	66966954	193029676	4992754	46	11698											
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196387008	196387008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LRRC33	NM_198565	exon3	c.C494T	p.A165V	CCCTGGCGGGGAA	.	93	50	70	0	.	92	T	196387008	C	T	196387008	3	4	90	1	0	0	0	0	1	0	0	0	8988	768	27	1	500	1	LRRC33	3	196387008	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3357332	196387008	1635422	47	11699											
LRCH3	84859	broad.mit.edu;bcgsc.ca	37	3	197592322	197592322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LRCH3	NM_032773	exon16	c.G1745T	p.S582I	TATTAAGTTCACC	.	218	9	142	1	.	91	T	197592322	G	T	197592322	3	4	90	1	0	0	0	0	1	0	0	0	8934	1029	36	3	1807	3	LRCH3	3	197592322	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	1205314	197592322	430108	48	11700											
PDCL2	132954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56422846	56422846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_152401	exon6	c.A604T	p.I202L	TCTGTATTGCTCC	.	87	25	72	0	.	.	A	56422846	T	A	56422846	3	1	90	1	0	0	0	0	1	0	0	0	11627	1493	52	4	125	4	PDCL2	4	56422846	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		56422846	134731430	49	11701											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283832	74283834	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ALB	NM_000477	exon12	c.1456_1458del	p.486_486del	TTATGTGTGTTGC	.	96	20	55	0	.	96	-	74283834	GTG	-	74283832	7	5	90	1	0	1	0	1	0	0	0	0	486	1377	48	0	1502	0	ALB	4	74283832	In_Frame_Del	DEL	GTG	TCGA-DD-A4NI-01A-11D-A27I-10	17860986	74283832	116870444	50	11702											
QRFPR	84109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122301704	122301704	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	QRFPR	NM_198179	exon1	c.G99C	p.P33P	GACGAGCGGTCGC	.	82	22	91	1	.	90	G	122301704	C	G	122301704	2	3	90	1	0	0	0	0	0	0	0	1	12878	755	27	4		4	QRFPR	4	122301704	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	48017872	122301704	68852572	51	11703											
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122747089	122747089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	BBS7	NM_176824	exon19	c.A2074G	p.K692E	GTACTTTAGTTTT	.	37	10	18	0	.	91	C	122747089	T	C	122747089	3	2	90	1	0	0	0	0	1	0	0	0	1341	1763	61	2	77	2	BBS7	4	122747089	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	445385	122747089	68407187	52	11704											
DCLK2	166614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151168791	151168791	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DCLK2	NM_001040261	exon14	c.C1866A	p.I622I	CCAGATCTTGGCT	.	107	40	68	1	.	300	A	151168791	C	A	151168791	2	1	90	1	0	0	0	0	0	0	0	1	4292	903	32	3		3	DCLK2	4	151168791	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	28421702	151168791	39985485	53	11705											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	10403536	10403536	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MARCH6	NM_005885	exon15	c.T1215A	p.T405T	TGCTACTCTGAAA	.	176	12	108	0	.	501	A	10403536	T	A	10403536	2	1	90	1	0	0	0	0	0	0	0	1	9305	1538	54	4		4	MARCH6	5	10403536	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		10403536	170511724	54	11706											
NUDT12	83594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102895039	102895039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUDT12	NM_031438	exon3	c.G337A	p.E113K	CCACTTCATTCGT	.	143	35	67	0	.	90	T	102895039	C	T	102895039	3	4	90	1	0	0	0	0	1	0	0	0	10728	835	29	3	1071	3	NUDT12	5	102895039	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	92491503	102895039	78020221	55	11707											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127674670	127674670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FBN2	NM_001999	exon26	c.T3427C	p.F1143L	CTTCGAAGCACTC	.	326	21	219	0	.	146	G	127674670	A	G	127674670	3	3	90	1	0	0	0	0	1	0	0	0	5703	72	3	2	5471	2	FBN2	5	127674670	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	24779631	127674670	53240590	56	11708											
PCDHGC3	5098	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140856170	140856170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PCDHGC3	NM_032402	exon1	c.G487T	p.D163Y	GATCCCGATGTGG	.	274	27	197	2	.	24	T	140856170	G	T	140856170	3	4	90	1	0	0	0	0	1	0	0	0	11569	1058	37	1	489	1	PCDHGC3	5	140856170	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	13181500	140856170	40059090	57	11709											
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	159797621	159797621	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	C1QTNF2	NM_031908	exon1	c.G24T	p.P8P	GAGCGTCGGCCCC	.	39	14	18	0	.	91	A	159797621	C	A	159797621	2	1	90	1	0	0	0	0	0	0	0	1	1963	871	31	1		1	C1QTNF2	5	159797621	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	18941451	159797621	21117639	58	11710											
HK3	3101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176318451	176318451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HK3	NM_002115	exon3	c.C197T	p.A66V	GGGCTGGCCTGTC	.	143	11	110	0	.	294	A	176318451	G	A	176318451	3	1	90	1	0	0	0	0	1	0	0	0	7192	1203	42	3	2642	3	HK3	5	176318451	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	16520830	176318451	4596809	59	11711											
DBN1	1627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176885388	176885388	+	Missense_Mutation	SNP	C	C	A	rs142184479	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DBN1	NM_080881	exon13	c.G1453T	p.G485W	CTTCCCCGTTGCC	.	212	85	158	1	C|1.000;T|0.000	587	A	176885388	C	A	176885388	3	1	90	1	0	0	0	0	1	0	0	0	4252	652	23	1	514	1	DBN1	5	176885388	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	566937	176885388	4029872	60	11712											
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180166721	180166721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR2Y1	NM_001001657	exon1	c.T338G	p.V113G	AGGAGCACACACT	.	141	13	105	0	.	68	C	180166721	A	C	180166721	3	2	90	1	0	0	0	0	1	0	0	0	11035	159	6	5	601	5	OR2Y1	5	180166721	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	3281333	180166721	748539	61	11713											
HIST1H1B	3009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27834746	27834746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HIST1H1B	NM_005322	exon1	c.A562G	p.K188E	GACTCTTGGTTGC	.	138	30	90	0	.	585	C	27834746	T	C	27834746	3	2	90	1	0	0	0	0	1	0	0	0	7123	1821	63	2	122	2	HIST1H1B	6	27834746	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		27834746	143280321	62	11714											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32036335	32036335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TNXB	NM_019105	exon17	c.C6052G	p.L2018V	GGACCAGGAAGTG	.	239	37	163	0	.	90	C	32036335	G	C	32036335	3	2	90	1	0	0	0	0	1	0	0	0	16343	991	35	4	8773	4	TNXB	6	32036335	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	4201589	32036335	139078732	63	11715											
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41048594	41048594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFYA	NM_002505	exon3	c.G120A	p.Q40Q	GGCCCAGGTGGCA	.	134	42	70	0	.	226	A	41048594	G	A	41048594	2	1	90	1	0	0	0	0	0	0	0	1	10389	991	35	3		3	NFYA	6	41048594	Silent	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	9012259	41048594	130066473	64	11716											
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44273478	44273478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AARS2	NM_020745	exon10	c.C1346T	p.P449L	TCCAAGGGGAGTC	.	339	90	211	0	.	91	A	44273478	G	A	44273478	3	1	90	1	0	0	0	0	1	0	0	0	20	1232	43	3	1663	3	AARS2	6	44273478	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	3224884	44273478	126841589	65	11717											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83866961	83866961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOPEY1	NM_015018	exon35	c.T6665C	p.L2222P	TGTTCCTGTTTTT	.	106	7	78	0	.	155	C	83866961	T	C	83866961	3	2	90	1	0	0	0	0	1	0	0	0	4707	1580	55	2	6795	2	DOPEY1	6	83866961	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	39593483	83866961	87248106	66	11718											
TAAR9	134860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132859671	132859671	+	RNA	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	CTTGGTGGGAGTC	.	312	119	205	0	.	.	C	132859671	G	C	132859671	1	2	90	0	1	0	0	0	0	0	0	0	15491	1335	47	4		4	TAAR9	6	132859671	RNA	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	48992710	132859671	38255396	67	11719											
OLIG3	167826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137815097	137815097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OLIG3	NM_175747	exon1	c.A211G	p.K71E	TGATTTTGTACTT	.	130	7	100	0	.	68	C	137815097	T	C	137815097	3	2	90	1	0	0	0	0	1	0	0	0	10862	1821	63	2	611	2	OLIG3	6	137815097	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	4955426	137815097	33299970	68	11720											
SUN1	23353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	905675	905675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SUN1	NM_001130965	exon16	c.T1951G	p.F651V	TGGTACTTCTCGC	.	189	87	82	0	.	90	G	905675	T	G	905675	3	3	90	1	0	0	0	0	1	0	0	0	15388	1609	56	5	2196	5	SUN1	7	905675	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		905675	158232988	69	11721											
CHST12	55501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	2472325	2472325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHST12	NM_018641	exon2	c.C51A	p.F17L	GGTGTTCATGATC	.	87	46	40	0	.	226	A	2472325	C	A	2472325	3	1	90	1	0	0	0	0	1	0	0	0	3400	825	29	3	53	3	CHST12	7	2472325	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	1566650	2472325	156666338	70	11722											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4091432	4091432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SDK1	NM_152744	exon19	c.A2881T	p.T961S	CCCAGCACACCTC	.	193	16	127	0	.	138	T	4091432	A	T	4091432	3	4	90	1	0	0	0	0	1	0	0	0	13968	159	6	4	2955	4	SDK1	7	4091432	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	1619107	4091432	155047231	71	11723											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18688299	18688299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HDAC9	NM_178425	exon10	c.T1460A	p.M487K	TCCACATGAACAA	.	144	42	78	0	.	227	A	18688299	T	A	18688299	3	1	90	1	0	0	0	0	1	0	0	0	7014	1464	51	4	1498	4	HDAC9	7	18688299	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	14596867	18688299	140450364	72	11724											
IGF2BP3	10643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23353255	23353255	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IGF2BP3	NM_006547	exon13	c.T1413C	p.Y471Y	TTTTCCATAAATT	.	81	38	35	0	.	92	G	23353255	A	G	23353255	2	3	90	1	0	0	0	0	0	0	0	1	7575	224	8	2		2	IGF2BP3	7	23353255	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	4664956	23353255	135785408	73	11725											
TBX20	57057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35242186	35242186	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TBX20	NM_001077653	exon8	c.G1200T	p.S400S	AATGGCCGATGGT	.	425	95	270	1	.	90	A	35242186	C	A	35242186	2	1	90	1	0	0	0	0	0	0	0	1	15653	639	23	1		1	TBX20	7	35242186	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	11888931	35242186	123896477	74	11726											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83643576	83643576	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SEMA3A	NM_006080	exon7	c.T759C	p.D253D	TTCTCCATCTATT	.	100	46	64	0	.	156	G	83643576	A	G	83643576	2	3	90	1	0	0	0	0	0	0	0	1	14024	214	8	2		2	SEMA3A	7	83643576	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	48401390	83643576	75495087	75	11727											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100364744	100364744	+	RNA	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZAN	.	.	.	.	GGTCCAGGTCCCA	.	196	24	141	0	.	142	T	100364744	G	T	100364744	1	4	90	0	1	0	0	0	0	0	0	0	17510	1000	35	3		3	ZAN	7	100364744	RNA	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	16721168	100364744	58773919	76	11728											
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102988211	102988211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PSMC2	NM_001204453	exon1	c.A53C	p.D18A	AGAAGGACGACAA	.	181	79	155	0	.	90	C	102988211	A	C	102988211	3	2	90	1	0	0	0	0	1	0	0	0	12686	275	10	5	55	5	PSMC2	7	102988211	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	2623467	102988211	56150452	77	11729											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111517084	111517084	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK4	NM_014705	exon18	c.1744+2T>C	.	TACATTACCATTT	.	87	6	41	0	.	26	G	111517084	A	G	111517084	5	3	90	1	0	0	0	0	0	0	1	0	4689	405	14	2	4298	2	DOCK4	7	111517084	Splice_Site	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	8528873	111517084	47621579	78	11730											
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	122526154	122526154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CADPS2	NM_001167940	exon1	c.G238C	p.E80Q	TCCGCTCCTGCTC	.	143	29	94	0	.	94	G	122526154	C	G	122526154	3	3	90	1	0	0	0	0	1	0	0	0	2571	864	30	4	3816	4	CADPS2	7	122526154	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	11009070	122526154	36612509	79	11731											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141764227	141764227	+	Silent	SNP	T	T	C	rs3087317		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MGAM	NM_004668	exon37	c.T4389C	p.C1463C	CCTTTGTATGGAG	.	158	11	102	0	.	70	C	141764227	T	C	141764227	2	2	90	1	0	0	0	0	0	0	0	1	9541	1644	57	2		2	MGAM	7	141764227	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	19238073	141764227	17374436	80	11732											
PRSS1	5644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142458441	142458441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PRSS1	NM_002769	exon2	c.G76A	p.G26R	ATCGTTGGGGGCT	.	551	62	326	1	.	577	A	142458441	G	A	142458441	3	1	90	1	0	0	0	0	1	0	0	0	12614	1348	47	3	82	3	PRSS1	7	142458441	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	694214	142458441	16680222	81	11733											
USP17L2	377630	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	11995368	11995368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USP17L2	NM_201402	exon1	c.T902C	p.L301P	ATGTCAAGGCACT	.	220	22	176	0	.	435	G	11995368	A	G	11995368	3	3	90	1	0	0	0	0	1	0	0	0	17045	72	3	2	694	2	USP17L2	8	11995368	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10		11995368	134368654	82	11734											
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17815276	17815276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PCM1	NM_006197	exon13	c.A2032G	p.M678V	GTTGCTATGGTAC	.	69	8	98	0	.	742	G	17815276	A	G	17815276	3	3	90	1	0	0	0	0	1	0	0	0	11584	449	16	2	2074	2	PCM1	8	17815276	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	5819908	17815276	128548746	83	11735											
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	22442575	22442575	+	Missense_Mutation	SNP	T	T	A	rs2294049		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDLIM2	NM_021630	exon5	c.T1111A	p.S371T	AGGTCCTCCTACT	.	192	12	192	0	T|1.000;|0.000	90	A	22442575	T	A	22442575	3	1	90	1	0	0	0	0	1	0	0	0	11680	1551	54	4	375	4	PDLIM2	8	22442575	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	4627299	22442575	123921447	84	11736											
NKX3-1	4824	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23538852	23538852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NKX3-1	NM_006167	exon2	c.C587T	p.S196F	GGCAAAGAGGAGT	.	38	18	59	1	.	90	A	23538852	G	A	23538852	3	1	90	1	0	0	0	0	1	0	0	0	10455	942	33	3	121	3	NKX3-1	8	23538852	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	1096277	23538852	122825170	85	11737											
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu	37	8	94747568	94747568	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RBM12B	NM_203390	exon3	c.A1071G	p.P357P	AGAAATTGGATCA	.	78	4	33	0	.	90	C	94747568	T	C	94747568	2	2	90	1	0	0	0	0	0	0	0	1	13114	1799	63	2		2	RBM12B	8	94747568	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	71208716	94747568	51616454	86	11738											
POU5F1B	5462	hgsc.bcm.edu;mdanderson.org	37	8	128428181	128428181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001159542	exon1	c.G70T	p.G24W	CCATGGGGGGCGG	.	19	4	11	0	.	.	T	128428181	G	T	128428181	3	4	90	1	0	0	0	0	1	0	0	0	12282	1232	43	3	72	3	POU5F1B	8	128428181	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	33680613	128428181	17935841	87	11739											
PTP4A3	11156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142435203	142435203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTP4A3	NM_032611	exon2	c.A161T	p.D54V	CCTATGACAAAAC	.	127	26	69	0	.	226	T	142435203	A	T	142435203	3	4	90	1	0	0	0	0	1	0	0	0	12772	275	10	4	167	4	PTP4A3	8	142435203	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	14007022	142435203	3928819	88	11740											
SLC24A2	25769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19528053	19528053	+	Silent	SNP	C	C	T	rs201117303		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC24A2	NM_020344	exon8	c.G1563A	p.A521A	CTGGTGCGCCCAC	.	112	42	98	1	C|0.999;T|0.000	517	T	19528053	C	T	19528053	2	4	90	1	0	0	0	0	0	0	0	1	14466	755	27	1		1	SLC24A2	9	19528053	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10		19528053	121685378	89	11741											
ZNF658	26149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	40773313	40773313	+	Silent	SNP	C	C	A	rs138850783	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF658	NM_033160	exon5	c.G1962T	p.G654G	TTTCTCCCCTGTG	.	130	20	134	1	C|1.000;G|0.000	45	A	40773313	C	A	40773313	2	1	90	1	0	0	0	0	0	0	0	1	18066	610	22	3		3	ZNF658	9	40773313	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	21245260	40773313	100440118	90	11742											
ROR2	4920	hgsc.bcm.edu;mdanderson.org	37	9	94495598	94495598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ROR2	NM_004560	exon6	c.C743G	p.P248R	TCACGCGGCTTGG	.	26	10	25	0	.	1471	C	94495598	G	C	94495598	3	2	90	1	0	0	0	0	1	0	0	0	13527	1116	39	4	2104	4	ROR2	9	94495598	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	53722285	94495598	46717833	91	11743											
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331510	107331510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR13C8	NM_001004483	exon1	c.C62A	p.P21Q	CCCACCCAAAGCT	.	55	11	51	0	.	70	A	107331510	C	A	107331510	3	1	90	1	0	0	0	0	1	0	0	0	10938	594	21	3	64	3	OR13C8	9	107331510	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	12835912	107331510	33881921	92	11744											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131762026	131762026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP188	NM_015354	exon34	c.A3785T	p.K1262M	AGGACAAGGACAG	.	138	9	136	0	.	207	T	131762026	A	T	131762026	3	4	90	1	0	0	0	0	1	0	0	0	10758	72	3	4	3919	4	NUP188	9	131762026	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	24430516	131762026	9451405	93	11745											
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137300011	137300011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RXRA	NM_002957	exon3	c.A296G	p.N99S	CTATGAACCCCGT	.	150	49	118	1	.	188	G	137300011	A	G	137300011	3	3	90	1	0	0	0	0	1	0	0	0	13763	43	2	2	306	2	RXRA	9	137300011	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	5537985	137300011	3913420	94	11746											
AKR1E2	83592	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	4875659	4875659	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AKR1E2	NM_001271021	exon3	c.324+1G>T	.	TTCAAGGTACCGT	.	274	57	232	1	.	68	T	4875659	G	T	4875659	5	4	90	1	0	0	0	0	0	0	1	0	474	1275	44	3	335	3	AKR1E2	10	4875659	Splice_Site	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		4875659	130659088	95	11747											
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50863255	50863255	+	Silent	SNP	C	C	T	rs201580702	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHAT	NM_020549	exon12	c.C1749T	p.A583A	GAGAGCCGTGACT	.	192	61	120	0	C|0.999;G|0.001	514	T	50863255	C	T	50863255	2	4	90	1	0	0	0	0	0	0	0	1	3313	639	23	1		1	CHAT	10	50863255	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	45987596	50863255	84671492	96	11748											
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85909939	85909939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GHITM	NM_014394	exon7	c.T721C	p.F241L	GAAAAGTTTCTGA	.	167	20	121	1	.	90	C	85909939	T	C	85909939	3	2	90	1	0	0	0	0	1	0	0	0	6370	1725	60	2	743	2	GHITM	10	85909939	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	35046684	85909939	49624808	97	11749											
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95791740	95791740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PLCE1	NM_016341	exon2	c.G937A	p.D313N	GAAGAAGACGCTT	.	84	8	77	0	.	229	A	95791740	G	A	95791740	3	1	90	1	0	0	0	0	1	0	0	0	12034	942	33	3	939	3	PLCE1	10	95791740	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	9881801	95791740	39743007	98	11750											
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97917317	97917317	+	RNA	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF518A	.	.	.	.	GTTCAGGTTTCAT	.	196	47	131	0	.	23	A	97917317	G	A	97917317	1	1	90	0	1	0	0	0	0	0	0	0	17959	1261	44	3		3	ZNF518A	10	97917317	RNA	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	2125577	97917317	37617430	99	11751											
SLC18A2	6571	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003680	119003680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC18A2	NM_003054	exon3	c.T320C	p.V107A	ACATGGTGACCAA	.	176	20	163	1	.	90	C	119003680	T	C	119003680	3	2	90	1	0	0	0	0	1	0	0	0	14426	1696	59	2	326	2	SLC18A2	10	119003680	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	21086363	119003680	16531067	100	11752											
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128796464	128796464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK1	NM_001380	exon8	c.G718A	p.A240T	GAAGATGCTGAAG	.	214	60	230	1	.	698	A	128796464	G	A	128796464	3	1	90	1	0	0	0	0	1	0	0	0	4684	1319	46	3	748	3	DOCK1	10	128796464	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	9792784	128796464	6738283	101	11753											
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129216713	129216713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK1	NM_001380	exon45	c.G4537T	p.D1513Y	CACCTGGATGACC	.	96	33	77	0	.	698	T	129216713	G	T	129216713	3	4	90	1	0	0	0	0	1	0	0	0	4684	1174	41	3	4715	3	DOCK1	10	129216713	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	420249	129216713	6318034	102	11754											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6566625	6566625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DNHD1	NM_144666	exon21	c.A4456G	p.K1486E	CTGCCCAAGCAAA	.	181	47	156	0	.	24	G	6566625	A	G	6566625	3	3	90	1	0	0	0	0	1	0	0	0	4668	131	5	2	4539	2	DNHD1	11	6566625	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10		6566625	128439891	103	11755											
DCHS1	8642	broad.mit.edu;mdanderson.org	37	11	6651029	6651029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DCHS1	NM_003737	exon11	c.G4909A	p.V1637I	CACTGACGGTCAG	.	39	7	48	1	.	73	T	6651029	C	T	6651029	3	4	90	1	0	0	0	0	1	0	0	0	4287	536	19	1	5031	1	DCHS1	11	6651029	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	84404	6651029	128355487	104	11756											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	17141377	17141377	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PIK3C2A	NM_002645	exon15	c.G2802A	p.W934X	TGCAGGCCACTGG	.	116	40	94	0	.	1310	T	17141377	C	T	17141377	4	4	90	1	0	0	0	0	0	1	0	0	11909	740	26	3	2330	3	PIK3C2A	11	17141377	Nonsense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	10490348	17141377	117865139	105	11757											
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34101204	34101204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CAPRIN1	NM_203364	exon7	c.G718A	p.V240I	GAGCGTGTTTTTC	.	72	19	82	0	.	91	A	34101204	G	A	34101204	3	1	90	1	0	0	0	0	1	0	0	0	2635	1377	48	3	740	3	CAPRIN1	11	34101204	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	16959827	34101204	100905312	106	11758											
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	44073229	44073229	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACCSL	NM_001031854	exon5	c.T732A	p.S244S	CTGCTCTGTCTTC	.	234	10	152	0	.	95	A	44073229	T	A	44073229	2	1	90	1	0	0	0	0	0	0	0	1	134	1567	55	4		4	ACCSL	11	44073229	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	9972025	44073229	90933287	107	11759											
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47381502	47381502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPI1	NM_001080547	exon3	c.C235A	p.P79T	GCGGGGGCTGCAC	.	28	9	23	0	.	226	T	47381502	G	T	47381502	3	4	90	1	0	0	0	0	1	0	0	0	15048	1203	42	3	592	3	SPI1	11	47381502	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	3308273	47381502	87625014	108	11760											
EML3	256364	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62376466	62376466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EML3	NM_153265	exon7	c.A897G	p.R299R	GTAATGTCTCTGG	.	140	39	100	2	.	91	C	62376466	T	C	62376466	2	2	90	1	0	0	0	0	0	0	0	1	5098	1664	58	2		2	EML3	11	62376466	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	14994964	62376466	72630050	109	11761											
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62768191	62768191	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC22A8	NM_004254	exon4	c.437+1G>T	.	GTCTCACCTGTCA	.	184	8	125	0	.	93	A	62768191	C	A	62768191	5	1	90	1	0	0	0	0	0	0	1	0	14460	521	18	3	1226	3	SLC22A8	11	62768191	Splice_Site	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	391725	62768191	72238325	110	11762											
SPCS2	9789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74676881	74676881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPCS2	NM_014752	exon3	c.C272A	p.S91Y	CAATCTCCTGTTT	.	68	22	66	0	.	113	A	74676881	C	A	74676881	3	1	90	1	0	0	0	0	1	0	0	0	15023	855	30	3	282	3	SPCS2	11	74676881	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	11908690	74676881	60329635	111	11763											
APOC3	345	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116703552	116703552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	APOC3	NM_000040	exon4	c.C252G	p.F84L	TGAGTTCTGGGAT	.	179	59	159	1	.	68	G	116703552	C	G	116703552	3	3	90	1	0	0	0	0	1	0	0	0	799	912	32	4	262	4	APOC3	11	116703552	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	42026671	116703552	18302964	112	11764											
GPR19	2842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12815347	12815347	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR19	NM_006143	exon4	c.A36G	p.P12P	CAAATGTGGCTTG	.	66	9	60	0	.	91	C	12815347	T	C	12815347	2	2	90	1	0	0	0	0	0	0	0	1	6679	1683	59	2		2	GPR19	12	12815347	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		12815347	121036548	113	11765											
CCDC91	55297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	28459739	28459739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CCDC91	NM_018318	exon4	c.A332G	p.K111R	ATGAAAAAAGTAA	.	77	28	52	0	.	90	G	28459739	A	G	28459739	3	3	90	1	0	0	0	0	1	0	0	0	2870	14	1	2	346	2	CCDC91	12	28459739	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	15644392	28459739	105392156	114	11766											
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	30863308	30863308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CAPRIN2	NM_001002259	exon18	c.C2912T	p.T971I	ACAGGGGTCATGC	.	184	16	128	0	.	92	A	30863308	G	A	30863308	3	1	90	1	0	0	0	0	1	0	0	0	2636	1261	44	3	475	3	CAPRIN2	12	30863308	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	2403569	30863308	102988587	115	11767											
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51758078	51758078	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GALNT6	NM_007210	exon6	c.G876A	p.V292V	CACCACCACTGTC	.	219	65	174	0	.	92	T	51758078	C	T	51758078	2	4	90	1	0	0	0	0	0	0	0	1	6217	581	21	3		3	GALNT6	12	51758078	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	20894770	51758078	82093817	116	11768											
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53189359	53189359	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KRT3	NM_057088	exon1	c.C468T	p.G156G	AGGACTGCCCAAG	.	174	65	118	0	.	90	A	53189359	G	A	53189359	2	1	90	1	0	0	0	0	0	0	0	1	8466	1306	46	3		3	KRT3	12	53189359	Silent	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	1431281	53189359	80662536	117	11769											
ZC3H10	84872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56515237	56515237	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZC3H10	NM_032786	exon3	c.C891T	p.P297P	GGCCCCCACTGTG	.	85	33	91	1	.	90	T	56515237	C	T	56515237	2	4	90	1	0	0	0	0	0	0	0	1	17556	581	21	3		3	ZC3H10	12	56515237	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3325878	56515237	77336658	118	11770											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70988332	70988332	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTPRB	NM_001109754	exon6	c.G1431A	p.G477G	GGTCAGCCCGTGA	.	290	82	222	0	.	226	T	70988332	C	T	70988332	2	4	90	1	0	0	0	0	0	0	0	1	12796	726	26	3		3	PTPRB	12	70988332	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	14473095	70988332	62863563	119	11771											
GPR133	283383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131622709	131622709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR133	NM_198827	exon24	c.A2464G	p.K822E	AAAACCAAGGTCT	.	94	16	87	1	.	191	G	131622709	A	G	131622709	3	3	90	1	0	0	0	0	1	0	0	0	6643	131	5	2	2558	2	GPR133	12	131622709	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	60634377	131622709	2229186	120	11772											
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	26586735	26586735	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP8A2	NM_016529	exon36	c.C3444A	p.G1148G	CCGGGGCAGCTCC	.	61	35	38	0	.	138	A	26586735	C	A	26586735	2	1	90	1	0	0	0	0	0	0	0	1	1193	697	25	3		3	ATP8A2	13	26586735	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10		26586735	88583143	121	11773											
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41766715	41766715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KBTBD7	NM_032138	exon1	c.A1679G	p.Q560R	ACAATCTGGTAGT	.	187	52	155	0	.	91	C	41766715	T	C	41766715	3	2	90	1	0	0	0	0	1	0	0	0	7998	1580	55	2	379	2	KBTBD7	13	41766715	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	15179980	41766715	73403163	122	11774											
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42763420	42763420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DGKH	NM_001204504	exon16	c.G1887T	p.R629S	AGTGAGGCAAGTC	.	116	31	88	0	.	652	T	42763420	G	T	42763420	3	4	90	1	0	0	0	0	1	0	0	0	4470	1194	42	3	1945	3	DGKH	13	42763420	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	996705	42763420	72406458	123	11775											
NUFIP1	26747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45563368	45563368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUFIP1	NM_012345	exon1	c.204delC	p.P68fs	CTCCATGGGGGGC	.	38	11	39	0	.	90	-	45563368	G	-	45563368	7	5	90	1	0	1	0	1	0	0	0	0	10748	1335	47	0	1323	0	NUFIP1	13	45563368	Frame_Shift_Del	DEL	G	TCGA-DD-A4NI-01A-11D-A27I-10	2799948	45563368	69606510	124	11776											
UPF3A	65110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115052106	115052106	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	UPF3A	NM_080687	exon4	c.532+2T>C	.	CATTGGTCTGTTT	.	237	23	175	0	.	91	C	115052106	T	C	115052106	5	2	90	1	0	0	0	0	0	0	1	0	17002	1681	58	2	651	2	UPF3A	13	115052106	Splice_Site	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	69488738	115052106	117772	125	11777											
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24618693	24618693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RNF31	NM_017999	exon6	c.G710T	p.C237F	CCCTGTGTCCAGC	.	151	44	106	0	.	90	T	24618693	G	T	24618693	3	4	90	1	0	0	0	0	1	0	0	0	13487	1377	48	3	732	3	RNF31	14	24618693	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		24618693	82730847	126	11778											
GPR135	64582	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59930690	59930690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR135	NM_022571	exon1	c.G1255T	p.G419C	CCGGGCCCTGGCT	.	88	30	87	1	.	90	A	59930690	C	A	59930690	3	1	90	1	0	0	0	0	1	0	0	0	6644	623	22	3	233	3	GPR135	14	59930690	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	35311997	59930690	47418850	127	11779											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64457170	64457170	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SYNE2	NM_182914	exon20	c.A2355G	p.A785A	TATGGCAAGAAGT	.	144	18	139	0	.	164	G	64457170	A	G	64457170	2	3	90	1	0	0	0	0	0	0	0	1	15443	117	5	2		2	SYNE2	14	64457170	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	4526480	64457170	42892370	128	11780											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu	37	14	86089799	86089799	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FLRT2	NM_013231	exon2	c.C1941G	p.Y647X	GCGATACTGCAAC	.	94	6	92	0	.	94	G	86089799	C	G	86089799	4	3	90	1	0	0	0	0	0	1	0	0	5939	576	20	4	1943	4	FLRT2	14	86089799	Nonsense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	21632629	86089799	21259741	129	11781											
SNRPN	6638	broad.mit.edu;bcgsc.ca	37	15	25221503	25221503	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SNRPN	NM_022807	exon9	c.G207T	p.L69L	GGGTCTGGTGTTG	.	157	7	128	1	.	469	T	25221503	G	T	25221503	2	4	90	1	0	0	0	0	0	0	0	1	14870	1335	47	3		3	SNRPN	15	25221503	Silent	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		25221503	77309889	130	11782											
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33855053	33855053	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RYR3	NM_001243996	exon11	c.T988A	p.L330I	GAGAAATTAGACT	.	98	33	66	1	.	520	A	33855053	T	A	33855053	3	1	90	1	0	0	0	0	1	0	0	0	13770	1490	52	4	1030	4	RYR3	15	33855053	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	8633550	33855053	68676339	131	11783											
GANC	2595	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42646624	42646624	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GANC	.	.	.	.	CAGTTTAAAAACA	.	288	117	185	0	.	92	G	42646624	A	G	42646624	2	3	90	1	0	0	0	0	0	0	0	1	6234	359	13	2		2	GANC	15	42646624	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	8791571	42646624	59884768	132	11784											
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48533795	48533795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC12A1	NM_001184832	exon10	c.A1299G	p.V433V	TTGTGTAGGTAAG	.	167	58	100	0	.	24	G	48533795	A	G	48533795	2	3	90	1	0	0	0	0	0	0	0	1	14382	434	15	2		2	SLC12A1	15	48533795	Silent	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	5887171	48533795	53997597	133	11785											
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49254841	49254841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SHC4	NM_203349	exon1	c.C372A	p.D124E	ACCTGGGTCCCGG	.	100	37	68	0	.	95	T	49254841	G	T	49254841	3	4	90	1	0	0	0	0	1	0	0	0	14273	1252	44	3	1568	3	SHC4	15	49254841	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	721046	49254841	53276551	134	11786											
PTPN9	5780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75782644	75782644	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTPN9	NM_002833	exon9	c.969-2A>T	.	GAGACCTGAAGGA	.	114	26	79	1	.	226	A	75782644	T	A	75782644	5	1	90	1	0	0	0	0	0	0	1	0	12794	1594	55	4	838	4	PTPN9	15	75782644	Splice_Site	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	26527803	75782644	26748748	135	11787											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76994169	76994169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SCAPER	NM_020843	exon19	c.G2438C	p.G813A	TTTCTCCCTTTAA	.	63	17	52	0	.	137	G	76994169	C	G	76994169	3	3	90	1	0	0	0	0	1	0	0	0	13878	623	22	4	1816	4	SCAPER	15	76994169	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	1211525	76994169	25537223	136	11788											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79350802	79350802	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RASGRF1	NM_001145648	exon3	c.G405A	p.E135E	CTCATGCTCTGTG	.	154	46	97	0	.	662	T	79350802	C	T	79350802	2	4	90	1	0	0	0	0	0	0	0	1	13072	796	28	3		3	RASGRF1	15	79350802	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	2356633	79350802	23180590	137	11789											
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83357541	83357541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AP3B2	NM_004644	exon4	c.G307C	p.E103Q	GCTGCTCCTCAGC	.	170	31	152	0	.	94	G	83357541	C	G	83357541	3	3	90	1	0	0	0	0	1	0	0	0	745	864	30	4	2957	4	AP3B2	15	83357541	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	4006739	83357541	19173851	138	11790											
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20494379	20494379	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACSM2A	NM_001010845	exon14	c.1510-1G>A	.	TTTGCAGGTGGTG	.	199	46	137	0	.	91	A	20494379	G	A	20494379	5	1	90	1	0	0	0	0	0	0	1	0	183	1014	35	3	1555	3	ACSM2A	16	20494379	Splice_Site	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		20494379	69860374	139	11791											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24834929	24834929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TNRC6A	NM_014494	exon25	c.T5690G	p.L1897R	CCGATCTCAATCA	.	138	27	122	0	.	92	G	24834929	T	G	24834929	3	3	90	1	0	0	0	0	1	0	0	0	16337	1551	54	5	5788	5	TNRC6A	16	24834929	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	4340550	24834929	65519824	140	11792											
XPO6	23214	broad.mit.edu;ucsc.edu	37	16	28167815	28167815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	XPO6	NM_015171	exon7	c.G677A	p.S226N	GCTGAACTGGGAC	.	93	11	64	1	.	227	T	28167815	C	T	28167815	3	4	90	1	0	0	0	0	1	0	0	0	17445	565	20	3	2772	3	XPO6	16	28167815	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3332886	28167815	62186938	141	11793											
TGFB1I1	7041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31487440	31487440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TGFB1I1	NM_001042454	exon8	c.C822A	p.F274L	CCCCTTCTGCCCC	.	76	19	63	0	.	90	A	31487440	C	A	31487440	3	1	90	1	0	0	0	0	1	0	0	0	15814	912	32	3	852	3	TGFB1I1	16	31487440	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3319625	31487440	58867313	142	11794											
NUP93	9688	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56868090	56868090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP93	NM_014669	exon14	c.C1588T	p.R530W	TTCGTGCGGCTCC	.	91	25	80	1	.	205	T	56868090	C	T	56868090	3	4	90	1	0	0	0	0	1	0	0	0	10772	759	27	1	1638	1	NUP93	16	56868090	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	25380650	56868090	33486663	143	11795											
PSKH1	5681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67943502	67943502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PSKH1	NM_006742	exon2	c.G850T	p.G284C	GCGCTGGGCGTCA	.	130	38	104	0	.	333	T	67943502	G	T	67943502	3	4	90	1	0	0	0	0	1	0	0	0	12664	1232	43	3	852	3	PSKH1	16	67943502	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	11075412	67943502	22411251	144	11796											
PDPR	55066	hgsc.bcm.edu;broad.mit.edu	37	16	70170122	70170122	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDPR	NM_017990	exon10	c.G1023A	p.R341R	TCTGAGGAGGATG	.	158	7	148	0	.	135	A	70170122	G	A	70170122	2	1	90	1	0	0	0	0	0	0	0	1	11689	1165	41	3		3	PDPR	16	70170122	Silent	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	2226620	70170122	20184631	145	11797											
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84270993	84270993	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCNG4	NM_172347	exon2	c.G99T	p.T33T	GGACGGCGTCTCC	.	136	43	119	1	.	93	A	84270993	C	A	84270993	2	1	90	1	0	0	0	0	0	0	0	1	8030	755	27	1		1	KCNG4	16	84270993	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	14100871	84270993	6083760	146	11798											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4446343	4446343	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MYBBP1A	NM_014520	exon20	c.C2757T	p.T919T	GAGGGCGGTGGGG	.	85	7	54	0	.	92	A	4446343	G	A	4446343	2	1	90	1	0	0	0	0	0	0	0	1	10008	1103	39	1		1	MYBBP1A	17	4446343	Silent	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		4446343	76748867	147	11799											
ZBTB4	57659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7370078	7370078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZBTB4	NM_001128833	exon3	c.G43A	p.A15T	GGACGGCGGGGGC	.	45	13	40	0	.	93	T	7370078	C	T	7370078	3	4	90	1	0	0	0	0	1	0	0	0	17538	768	27	1	3006	1	ZBTB4	17	7370078	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	2923735	7370078	73825132	148	11800											
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8047144	8047144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PER1	NM_002616	exon19	c.A2512G	p.K838E	TGGCTTTGGATCG	.	41	6	36	0	.	723	C	8047144	T	C	8047144	3	2	90	1	0	0	0	0	1	0	0	0	11729	1821	63	2	1380	2	PER1	17	8047144	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	677066	8047144	73148066	149	11801											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27023949	27023949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SUPT6H	NM_003170	exon30	c.G4058A	p.G1353D	ACCAGGGTGATGT	.	265	91	183	0	.	93	A	27023949	G	A	27023949	3	1	90	1	0	0	0	0	1	0	0	0	15397	1261	44	3	4172	3	SUPT6H	17	27023949	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	18976805	27023949	54171261	150	11802											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62248484	62248484	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TEX2	NM_018469	exon7	c.T2668A	p.F890I	GCTTGAAGGCCTG	.	219	30	131	0	.	91	T	62248484	A	T	62248484	3	4	90	1	0	0	0	0	1	0	0	0	15778	72	3	4	760	4	TEX2	17	62248484	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	35224535	62248484	18946726	151	11803											
SDK2	54549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71443757	71443757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SDK2	NM_001144952	exon5	c.G610A	p.E204K	TACTCTCCACGGT	.	464	61	236	1	.	24	T	71443757	C	T	71443757	3	4	90	1	0	0	0	0	1	0	0	0	13969	864	30	3	6072	3	SDK2	17	71443757	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	9195273	71443757	9751453	152	11804											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72342641	72342641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIF19	NM_153209	exon8	c.G902T	p.S301I	GCGACAGCAAGCT	.	303	166	168	0	.	90	T	72342641	G	T	72342641	3	4	90	1	0	0	0	0	1	0	0	0	8282	971	34	3	932	3	KIF19	17	72342641	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	898884	72342641	8852569	153	11805											
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79479128	79479128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACTG1	NM_001614	exon3	c.G164T	p.G55V	TCGTCGCCCACGT	.	68	16	43	0	.	91	A	79479128	C	A	79479128	3	1	90	1	0	0	0	0	1	0	0	0	196	739	26	3	979	3	ACTG1	17	79479128	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	7136487	79479128	1716082	154	11806											
CEP76	79959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12699183	12699183	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CEP76	NM_024899	exon4	c.G315A	p.R105R	ATACCTCCGTGTT	.	104	24	65	0	.	90	T	12699183	C	T	12699183	2	4	90	1	0	0	0	0	0	0	0	1	3261	842	30	3		3	CEP76	18	12699183	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10		12699183	65378065	155	11807											
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28971168	28971168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DSG4	NM_001134453	exon7	c.A812C	p.K271T	TAGAGAAAACTTC	.	93	30	50	0	.	177	C	28971168	A	C	28971168	3	2	90	1	0	0	0	0	1	0	0	0	4779	14	1	5	838	5	DSG4	18	28971168	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	16271985	28971168	49106080	156	11808											
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29115251	29115251	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DSG2	NM_001943	exon10	c.T1299C	p.D433D	AGAAGATAGAGAT	.	81	19	88	0	.	563	C	29115251	T	C	29115251	2	2	90	1	0	0	0	0	0	0	0	1	4777	1403	49	2		2	DSG2	18	29115251	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	144083	29115251	48961997	157	11809											
RPRD1A	55197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33573185	33573185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RPRD1A	NM_018170	exon7	c.T868C	p.S290P	ATCGAGATAAGTC	.	127	40	101	0	.	154	G	33573185	A	G	33573185	3	3	90	1	0	0	0	0	1	0	0	0	13615	333	12	2	74	2	RPRD1A	18	33573185	Missense_Mutation	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	4457934	33573185	44504063	158	11810											
TICAM1	148022	broad.mit.edu;mdanderson.org	37	19	4818030	4818030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TICAM1	NM_182919	exon2	c.A360C	p.E120D	GACGGCTTCCTGG	.	30	5	36	0	.	153	G	4818030	T	G	4818030	3	3	90	1	0	0	0	0	1	0	0	0	15889	1606	56	5	1782	5	TICAM1	19	4818030	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		4818030	54310953	159	11811											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6693493	6693493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	C3	NM_000064	exon25	c.A3160G	p.T1054A	GCTGGGTGTACCC	.	40	21	29	0	.	95	C	6693493	T	C	6693493	3	2	90	1	0	0	0	0	1	0	0	0	2204	1696	59	2	1899	2	C3	19	6693493	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	1875463	6693493	52435490	160	11812											
ARHGEF18	23370	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7504866	7504866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF18	NM_001130955	exon1	c.G40T	p.A14S	AGACCCGCTGCTT	.	97	33	127	1	.	228	T	7504866	G	T	7504866	3	4	90	1	0	0	0	0	1	0	0	0	901	1087	38	1	42	1	ARHGEF18	19	7504866	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	811373	7504866	51624117	161	11813											
WIZ	58525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15538010	15538010	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	WIZ	NM_021241	exon4	c.C864T	p.G288G	GGGGCTGCCCGGT	.	107	34	94	1	.	68	A	15538010	G	A	15538010	2	1	90	1	0	0	0	0	0	0	0	1	17372	1306	46	3		3	WIZ	19	15538010	Silent	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	8033144	15538010	43590973	162	11814											
CYP4F2	8529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16000329	16000329	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	CYP4F2,NS,carcinoma,-2	CYP4F2	NM_001082	exon7	c.G822A	p.R274R	GCGGCGCCGCTCC	.	270	110	185	2	.	92	T	16000329	C	T	16000329	2	4	90	1	0	0	0	0	0	0	0	1	4188	726	26	3		3	CYP4F2	19	16000329	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	462319	16000329	43128654	163	11815											
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22940609	22940609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF99	NM_001080409	exon4	c.G2102T	p.G701V	TTCTTTCCAGTAT	.	33	9	21	0	.	24	A	22940609	C	A	22940609	3	1	90	1	0	0	0	0	1	0	0	0	18201	855	30	3	1295	3	ZNF99	19	22940609	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	6940280	22940609	36188374	164	11816	60	2									
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	22940610	22940610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF99	NM_001080409	exon4	c.G2101T	p.G701X	TCTTTCCAGTATG	.	33	9	21	0	.	24	A	22940610	C	A	22940610	4	1	90	1	0	0	0	0	0	1	0	0	18201	603	21	3	1296	3	ZNF99	19	22940610	Nonsense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	1	22940610	36188373	165	11817	60	2									
SARS2	54938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39421333	39421333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SARS2	NM_001145901	exon1	c.G44A	p.R15H	CCCCGACGAGTCA	.	67	33	56	0	.	93	T	39421333	C	T	39421333	3	4	90	1	0	0	0	0	1	0	0	0	13845	536	19	1	1657	1	SARS2	19	39421333	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	16480723	39421333	19707650	166	11818											
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44980916	44980916	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF180	NM_013256	exon5	c.A1782T	p.V594V	CTGATGTACAACA	.	92	39	62	0	.	92	A	44980916	T	A	44980916	2	1	90	1	0	0	0	0	0	0	0	1	17745	1625	57	4		4	ZNF180	19	44980916	Silent	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10	5559583	44980916	14148067	167	11819											
GLTSCR1	29998	broad.mit.edu;mdanderson.org	37	19	48182830	48182830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GLTSCR1	NM_015711	exon6	c.C403T	p.Q135X	ACCCTGCAGCCTG	.	10	4	8	0	.	48	T	48182830	C	T	48182830	4	4	90	1	0	0	0	0	0	1	0	0	6474	711	25	3	417	3	GLTSCR1	19	48182830	Nonsense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3201914	48182830	10946153	168	11820											
KCNA7	3743	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49573780	49573780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCNA7	NM_031886	exon2	c.C911T	p.T304M	CGAAGCGTCTGGC	.	133	10	115	1	.	90	A	49573780	G	A	49573780	3	1	90	1	0	0	0	0	1	0	0	0	8008	1145	40	1	463	1	KCNA7	19	49573780	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	1390950	49573780	9555203	169	11821											
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54967843	54967843	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LENG8	NM_052925	exon11	c.C1474A	p.R492R	CGCAGTCGAAAGA	.	93	29	60	0	.	91	A	54967843	C	A	54967843	2	1	90	1	0	0	0	0	0	0	0	1	8724	876	31	1		1	LENG8	19	54967843	Silent	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	5394063	54967843	4161140	170	11822											
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55686689	55686689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SYT5	NM_003180	exon6	c.G559T	p.G187W	TGCCCCCCAGCTC	.	56	12	35	0	.	90	A	55686689	C	A	55686689	3	1	90	1	0	0	0	0	1	0	0	0	15474	623	22	3	617	3	SYT5	19	55686689	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	718846	55686689	3442294	171	11823											
NCOA6	23054	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33334661	33334661	+	Missense_Mutation	SNP	T	T	G	rs17092079	byfrequency;alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NCOA6	NM_014071	exon10	c.A2864C	p.N955T	TCCAAGTTAATTC	.	58	6	59	0	T|0.927;C|0.073	292	G	33334661	T	G	33334661	3	3	90	1	0	0	0	0	1	0	0	0	10233	1725	60	5	3351	5	NCOA6	20	33334661	Missense_Mutation	SNP	T	TCGA-DD-A4NI-01A-11D-A27I-10		33334661	29690859	172	11824											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50273555	50273555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP9A	NM_006045	exon14	c.C1428A	p.N476K	CACACCGTTGGAC	.	209	22	152	0	.	94	T	50273555	G	T	50273555	3	4	90	1	0	0	0	0	1	0	0	0	1198	1136	40	1	1775	1	ATP9A	20	50273555	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	16938894	50273555	12751965	173	11825											
KRTAP6-3	337968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	31964987	31964987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_181605	exon1	c.G223C	p.G75R	TACAGAGGCCTGG	.	175	13	132	1	.	.	C	31964987	G	C	31964987	3	2	90	1	0	0	0	0	1	0	0	0	8571	1000	35	4	225	4	KRTAP6-3	21	31964987	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		31964987	16164908	174	11826	61	2									
KRTAP6-3	337968	broad.mit.edu;bcgsc.ca	37	21	31964988	31964988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_181605	exon1	c.G224C	p.G75A	ACAGAGGCCTGGA	.	173	13	131	1	.	.	C	31964988	G	C	31964988	3	2	90	1	0	0	0	0	1	0	0	0	8571	1203	42	4	226	4	KRTAP6-3	21	31964988	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	1	31964988	16164907	175	11827	61	2									
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26706735	26706735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SEZ6L	NM_021115	exon7	c.C1614A	p.N538K	AGGCAACACCATC	.	194	58	182	0	.	95	A	26706735	C	A	26706735	3	1	90	1	0	0	0	0	1	0	0	0	14143	477	17	3	1640	3	SEZ6L	22	26706735	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10		26706735	24597831	176	11828											
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29885446	29885446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NEFH	NM_021076	exon4	c.C1817A	p.S606Y	CCAAGTCCCCAGT	.	217	61	155	0	.	90	A	29885446	C	A	29885446	3	1	90	1	0	0	0	0	1	0	0	0	10314	855	30	3	1831	3	NEFH	22	29885446	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	3178711	29885446	21419120	177	11829											
KIAA1644	85352	broad.mit.edu;mdanderson.org	37	22	44681359	44681359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIAA1644	NM_001099294	exon4	c.G548T	p.R183L	TCTCCCCGCAATG	.	126	9	131	0	.	23	A	44681359	C	A	44681359	3	1	90	1	0	0	0	0	1	0	0	0	8250	652	23	1	59	1	KIAA1644	22	44681359	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	14795913	44681359	6623207	178	11830											
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	47073042	47073042	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GRAMD4	NM_015124	exon18	c.1633-2A>T	.	CCTGCCAGCCGCT	.	93	6	71	0	.	23	T	47073042	A	T	47073042	5	4	90	1	0	0	0	0	0	0	1	0	6752	202	7	4	1701	4	GRAMD4	22	47073042	Splice_Site	SNP	A	TCGA-DD-A4NI-01A-11D-A27I-10	2391683	47073042	4231524	179	11831											
CHM	1121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85302520	85302520	+	Missense_Mutation	SNP	G	G	A	rs201252021		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHM	NM_001145414	exon1	c.C17T	p.P6L	TCCGAAGGGAGAG	.	188	117	154	0	.	131	A	85302520	G	A	85302520	3	1	90	1	0	0	0	0	1	0	0	0	3350	1000	35	3	2027	3	CHM	23	85302520	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10		85302520	69968040	180	11832											
NXF5	55998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101095774	101095774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NXF5	NM_032946	exon9	c.C574G	p.L192V	TGGAGAGATTCAG	.	293	54	234	0	.	204	C	101095774	G	C	101095774	3	2	90	1	0	0	0	0	1	0	0	0	10786	942	33	4	555	4	NXF5	23	101095774	Missense_Mutation	SNP	G	TCGA-DD-A4NI-01A-11D-A27I-10	15793254	101095774	54174786	181	11833											
FAM58A	92002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152858107	152858107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FAM58A	.	.	.	.	GCAGGGCCCAGGC	.	79	52	78	2	.	130	A	152858107	C	A	152858107	3	1	90	1	0	0	0	0	1	0	0	0	5590	739	26	3	240	3	FAM58A	23	152858107	Missense_Mutation	SNP	C	TCGA-DD-A4NI-01A-11D-A27I-10	51762333	152858107	2412453	182	11834											
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9777146	9777146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PIK3CD	NM_005026	exon7	c.C910T	p.P304S	AAACCACCTCCCA	.	260	94	238	0	.	1311	T	9777146	C	T	9777146	3	4	91	1	0	0	0	0	1	0	0	0	11915	507	18	3	928	3	PIK3CD	1	9777146	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10		9777146	239473475	1	11835											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16261862	16261862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SPEN	NM_015001	exon11	c.A9127G	p.S3043G	CACCCCAGCAGTA	.	785	160	690	0	.	298	G	16261862	A	G	16261862	3	3	91	1	0	0	0	0	1	0	0	0	15037	188	7	2	9169	2	SPEN	1	16261862	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	6484716	16261862	232988759	2	11836											
CLCNKB	1188	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16374904	16374904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CLCNKB	NM_000085	exon6	c.G565C	p.G189R	ACCATCGGGGAGC	.	595	67	519	1	.	91	C	16374904	G	C	16374904	3	2	91	1	0	0	0	0	1	0	0	0	3470	1116	39	4	583	4	CLCNKB	1	16374904	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	113042	16374904	232875717	3	11837											
ZMYM4	9202	broad.mit.edu;bcgsc.ca	37	1	35855617	35855617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZMYM4	NM_005095	exon15	c.G2505A	p.M835I	GGAAATGAAACAT	.	136	6	140	1	.	291	A	35855617	G	A	35855617	3	1	91	1	0	0	0	0	1	0	0	0	17699	1290	45	3	2563	3	ZMYM4	1	35855617	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	19480713	35855617	213395004	4	11838											
CD101	9398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117554255	117554255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD101	NM_001256109	exon3	c.G508C	p.A170P	TGTGAGGCATCCA	.	235	34	138	0	.	94	C	117554255	G	C	117554255	3	2	91	1	0	0	0	0	1	0	0	0	2962	1203	42	4	518	4	CD101	1	117554255	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	81698638	117554255	131696366	5	11839											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158906744	158906744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PYHIN1	NM_152501	exon2	c.A44G	p.E15G	GATTAGAGGTCAT	.	196	24	136	0	.	94	G	158906744	A	G	158906744	3	3	91	1	0	0	0	0	1	0	0	0	12865	304	11	2	46	2	PYHIN1	1	158906744	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	41352489	158906744	90343877	6	11840											
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	224345363	224345363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXO28	NM_015176	exon5	c.A1022T	p.N341I	GGCAGAATGAGGA	.	244	11	156	0	.	661	T	224345363	A	T	224345363	3	4	91	1	0	0	0	0	1	0	0	0	5738	101	4	4	1040	4	FBXO28	1	224345363	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	65438619	224345363	24905258	7	11841											
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96803391	96803391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASTL	NM_001002036	exon2	c.G104A	p.G35D	CTGGTACCACAGG	.	80	11	66	0	.	90	T	96803391	C	T	96803391	3	4	91	1	0	0	0	0	1	0	0	0	1063	507	18	3	1222	3	ASTL	2	96803391	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10		96803391	146395982	8	11842											
SLC20A1	6574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113416962	113416962	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC20A1	NM_005415	exon8	c.A1230G	p.K410K	TGACAAACCCTTA	.	276	87	250	1	.	92	G	113416962	A	G	113416962	2	3	91	1	0	0	0	0	0	0	0	1	14438	40	2	2		2	SLC20A1	2	113416962	Silent	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	16613571	113416962	129782411	9	11843											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747764	121747764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	GLI2	NM_005270	exon13	c.G4274T	p.G1425V	ACATGGGGTCGGT	.	140	55	93	0	.	954	T	121747764	G	T	121747764	3	4	91	1	0	0	0	0	1	0	0	0	6438	1232	43	3	4324	3	GLI2	2	121747764	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	8330802	121747764	121451609	10	11844											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179424403	179424403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTN	NM_001267550	exon326	c.A86456G	p.D28819G	CCAGAGTCATTTC	.	134	22	164	0	.	636	C	179424403	T	C	179424403	3	2	91	1	0	0	0	0	1	0	0	0	16732	1667	58	2	21671	2	TTN	2	179424403	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	57676639	179424403	63774970	11	11845											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189873705	189873705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	COL3A1	NM_000090	exon48	c.G3581A	p.G1194D	CCCCTGGTCCTTG	.	110	16	131	0	.	581	A	189873705	G	A	189873705	3	1	91	1	0	0	0	0	1	0	0	0	3688	1261	44	3	3771	3	COL3A1	2	189873705	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	10449302	189873705	53325668	12	11846											
CIDEC	63924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9911995	9911995	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CIDEC	NM_001199623	exon4	c.T258C	p.T86T	CATCAGAGTGTCC	.	68	11	46	0	.	90	G	9911995	A	G	9911995	2	3	91	1	0	0	0	0	0	0	0	1	3427	291	11	2		2	CIDEC	3	9911995	Silent	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10		9911995	188110435	13	11847											
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12861637	12861638	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.D1000Y	TATCTCGGACCAG	.	194	52	129	0	.	.	CT	12861638	GG	CT	12861637	3	2	91	1	0	0	0	0	1	0	0	0	2616	1103	39	4	3039	4	CAND2	3	12861637	Missense_Mutation	DNP	GG	TCGA-DD-A4NJ-01A-11D-A27I-10	2949642	12861637	185160793	14	11848											
TREX1	11277	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48508185	48508185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TREX1	NM_016381	exon1	c.T296C	p.L99P	GTGCCCTGGAGAG	.	210	69	172	2	.	227	C	48508185	T	C	48508185	3	2	91	1	0	0	0	0	1	0	0	0	16473	1580	55	2	298	2	TREX1	3	48508185	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	35646548	48508185	149514245	15	11849											
ZBTB11	27107	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	101383939	101383939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZBTB11	NM_014415	exon4	c.C1492T	p.P498S	CATCAGGGCCAAA	.	176	21	126	0	.	91	A	101383939	G	A	101383939	3	1	91	1	0	0	0	0	1	0	0	0	17521	1232	43	3	1701	3	ZBTB11	3	101383939	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	52875754	101383939	96638491	16	11850											
CD200	4345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112066565	112066565	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD200	NM_001004196	exon5	c.T657A	p.S219S	CACGTCTGTTACC	.	189	29	129	1	.	90	A	112066565	T	A	112066565	2	1	91	1	0	0	0	0	0	0	0	1	2980	1567	55	4		4	CD200	3	112066565	Silent	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	10682626	112066565	85955865	17	11851											
HTR3C	170572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183777775	183777776	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.P362Q	GCTGTCCCACTGC	.	65	26	66	0	.	.	AA	183777776	CC	AA	183777775	3	1	91	1	0	0	0	0	1	0	0	0	7446	623	22	3	1115	3	HTR3C	3	183777775	Missense_Mutation	DNP	CC	TCGA-DD-A4NJ-01A-11D-A27I-10	71711210	183777775	14244655	18	11852											
DNAJB14	79982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100844269	100844270	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DNAJB14	NM_001031723	exon3	c.379_380insA	p.A127fs	TATAAGCTTTTTT	.	168	48	155	0	.	226	T	100844270	-	T	100844269	7	5	91	1	0	1	1	0	0	0	0	0	4619	797	28	0	784	0	DNAJB14	4	100844269	Frame_Shift_Ins	INS	-	TCGA-DD-A4NJ-01A-11D-A27I-10		100844269	90310007	19	11853											
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104640550	104640550	+	Missense_Mutation	SNP	C	C	A	rs139574028	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TACR3	NM_001059	exon1	c.G283T	p.V95L	CCACCACCACACC	.	174	11	189	0	C|0.999;A|0.001	525	A	104640550	C	A	104640550	3	1	91	1	0	0	0	0	1	0	0	0	15504	507	18	3	1134	3	TACR3	4	104640550	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	3796281	104640550	86513726	20	11854											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450774	138450774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDH18	NM_019035	exon1	c.C2469A	p.H823Q	AGTGGCGTGGGTG	.	170	56	180	0	.	185	T	138450774	G	T	138450774	3	4	91	1	0	0	0	0	1	0	0	0	11513	1136	40	1	954	1	PCDH18	4	138450774	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	33810224	138450774	52703502	21	11855											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599429	3599429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRX1	NM_024337	exon2	c.T367A	p.F123I	GGCCAGTTCCAAT	.	116	13	89	0	.	228	A	3599429	T	A	3599429	3	1	91	1	0	0	0	0	1	0	0	0	7843	1725	60	4	373	4	IRX1	5	3599429	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10		3599429	177315831	22	11856											
C1QTNF3	114899	broad.mit.edu;bcgsc.ca	37	5	34024046	34024056	+	Frame_Shift_Del	DEL	CATAAGGTACA	CATAAGGTACA	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CATAAGGTACA	CATAAGGTACA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C1QTNF3	NM_181435	exon5	c.758_768del	p.253_256del	ATTGTGCATAAGG	.	209	9	177	0	.	90	-	34024056	CATAAGGTACA	-	34024046	7	5	91	1	0	1	0	1	0	0	0	0	1964	710	25	0	199	0	C1QTNF3	5	34024046	Frame_Shift_Del	DEL	CATAAGGTACA	TCGA-DD-A4NJ-01A-11D-A27I-10	30424617	34024046	146891214	23	11857											
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79733987	79733987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZFYVE16	NM_001105251	exon4	c.T1483G	p.C495G	TCTGATTGTTGTG	.	139	7	89	0	.	90	G	79733987	T	G	79733987	3	3	91	1	0	0	0	0	1	0	0	0	17661	1812	63	5	1489	5	ZFYVE16	5	79733987	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	45709941	79733987	101181273	24	11858											
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140348025	140348025	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDHAC2	NM_031883	exon1	c.A1674G	p.P558P	CCCACCACTGAGC	.	160	55	129	0	.	26	G	140348025	A	G	140348025	2	3	91	1	0	0	0	0	0	0	0	1	11533	146	6	2		2	PCDHAC2	5	140348025	Silent	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	60614038	140348025	40567235	25	11859											
PRELID1	27166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176732982	176732982	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PRELID1	NM_013237	exon3	c.C429G	p.V143V	AGCTGTCCAGGTG	.	76	22	54	1	.	90	G	176732982	C	G	176732982	2	3	91	1	0	0	0	0	0	0	0	1	12471	842	30	4		4	PRELID1	5	176732982	Silent	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	36384957	176732982	4182278	26	11860											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56494239	56494239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DST	NM_001723	exon18	c.A2673T	p.Q891H	TCTCCATTGCTAA	.	61	23	48	0	.	523	A	56494239	T	A	56494239	3	1	91	1	0	0	0	0	1	0	0	0	4783	1490	52	4	17750	4	DST	6	56494239	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10		56494239	114620828	27	11861											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	117709158	117709158	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ROS1	NM_002944	exon13	c.T1799G	p.L600X	GGGCCTAATTCAA	.	77	43	76	0	.	1353	C	117709158	A	C	117709158	4	2	91	1	0	0	0	0	0	1	0	0	13531	372	13	5	5368	5	ROS1	6	117709158	Nonsense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	61214919	117709158	53405909	28	11862											
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35013135	35013135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A686G	p.H229R	AGAATATGAGTCA	.	132	37	113	0	.	68	C	35013135	T	C	35013135	3	2	91	1	0	0	0	0	1	0	0	0	4740	1464	51	2	1401	2	DPY19L1	7	35013135	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10		35013135	124125528	29	11863	62	2									
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35013143	35013143	+	Silent	SNP	T	T	C	rs61744367	byfrequency;alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A678G	p.L226L	AGTCACTAGCAAC	.	133	38	114	0	T|0.974;A|0.026	68	C	35013143	T	C	35013143	2	2	91	1	0	0	0	0	0	0	0	1	4740	1509	53	2		2	DPY19L1	7	35013143	Silent	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	8	35013143	124125520	30	11864	62	2									
PEG10	23089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94293118	94293118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PEG10	NM_001172438	exon2	c.G478A	p.E160K	CTCCCAGAGAAGT	.	173	37	116	0	.	23	A	94293118	G	A	94293118	3	1	91	1	0	0	0	0	1	0	0	0	11719	943	33	3	484	3	PEG10	7	94293118	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	59279975	94293118	64845545	31	11865											
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	150878543	150878543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASB10	NM_001142459	exon3	c.G587A	p.C196Y	TCCGCACACCTAT	.	111	41	82	0	.	226	T	150878543	C	T	150878543	3	4	91	1	0	0	0	0	1	0	0	0	1014	478	17	3	828	3	ASB10	7	150878543	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	56585425	150878543	8260120	32	11866											
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103324043	103324043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UBR5	NM_015902	exon19	c.C2338G	p.Q780E	TTTCCTGTTCTGC	.	386	58	195	0	.	761	C	103324043	G	C	103324043	3	2	91	1	0	0	0	0	1	0	0	0	16902	1386	48	4	6225	4	UBR5	8	103324043	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10		103324043	43039979	33	11867											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131949435	131949435	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADCY8	NM_001115	exon5	c.C1365T	p.C455C	ACGAAGGCAGTGA	.	225	50	135	0	.	157	A	131949435	G	A	131949435	2	1	91	1	0	0	0	0	0	0	0	1	300	1195	42	3		3	ADCY8	8	131949435	Silent	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	28625392	131949435	14414587	34	11868											
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231676	142231676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC45A4	NM_001080431	exon2	c.G277A	p.G93S	ACTTACCGATGGC	.	231	46	113	0	.	70	T	142231676	C	T	142231676	3	4	91	1	0	0	0	0	1	0	0	0	14643	666	23	1	2147	1	SLC45A4	8	142231676	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	10282241	142231676	4132346	35	11869											
MTAP	4507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21838002	21838002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MTAP	NM_002451	exon5	c.C443T	p.T148M	CCAAAACGAGAGA	.	152	61	109	0	.	651	T	21838002	C	T	21838002	3	4	91	1	0	0	0	0	1	0	0	0	9911	536	19	1	461	1	MTAP	9	21838002	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10		21838002	119375429	36	11870											
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96435949	96435949	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHF2	NM_005392	exon18	c.C2431T	p.L811L	TCCTGCCTGCAGA	.	233	78	182	0	.	91	T	96435949	C	T	96435949	2	4	91	1	0	0	0	0	0	0	0	1	11830	680	24	3		3	PHF2	9	96435949	Silent	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	74597947	96435949	44777482	37	11871											
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	78761222	78761222	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNMA1	NM_001161352	exon19	c.A2209T	p.R737X	AGGCTCTCTCAAG	.	302	39	228	0	.	93	A	78761222	T	A	78761222	4	1	91	1	0	0	0	0	0	1	0	0	8073	1559	54	4	1697	4	KCNMA1	10	78761222	Nonsense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10		78761222	56773525	38	11872											
PAX2	5076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102509535	102509535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PAX2	NM_003987	exon2	c.G76A	p.V26M	GGGGGGGTGTTTG	.	28	9	24	0	.	90	A	102509535	G	A	102509535	3	1	91	1	0	0	0	0	1	0	0	0	11479	1261	44	3	82	3	PAX2	10	102509535	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	23748313	102509535	33025212	39	11873											
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127798378	127798378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAM12	NM_021641	exon7	c.A644G	p.Y215C	TCCACATACTTAG	.	68	21	78	0	.	716	C	127798378	T	C	127798378	3	2	91	1	0	0	0	0	1	0	0	0	236	1406	49	2	2261	2	ADAM12	10	127798378	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	25288843	127798378	7736369	40	11874											
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131665456	131665456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EBF3	NM_001005463	exon10	c.T961C	p.Y321H	ATTTGTAGGAGAG	.	154	49	117	0	.	91	G	131665456	A	G	131665456	3	3	91	1	0	0	0	0	1	0	0	0	4882	420	15	2	722	2	EBF3	10	131665456	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	3867078	131665456	3869291	41	11875											
HPX	3263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6453126	6453127	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HPX	NM_000613	exon8	c.956_957del	p.319_319del	GACCAGATAGAGT	.	51	15	68	0	.	90	-	6453127	AT	-	6453126	7	5	91	1	0	1	0	1	0	0	0	0	7346	340	12	0	443	0	HPX	11	6453126	Frame_Shift_Del	DEL	AT	TCGA-DD-A4NJ-01A-11D-A27I-10		6453126	128553390	42	11876											
UEVLD	55293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18579874	18579874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UEVLD	NM_018314	exon7	c.A616C	p.I206L	CTGCAATACCCTG	.	69	8	62	0	.	226	G	18579874	T	G	18579874	3	3	91	1	0	0	0	0	1	0	0	0	16930	1406	49	5	823	5	UEVLD	11	18579874	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	12126748	18579874	116426642	43	11877											
MS4A10	341116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60561505	60561505	+	Missense_Mutation	SNP	G	G	A	rs200380093		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MS4A10	NM_206893	exon5	c.G421A	p.V141I	CTCTTCGTCATCT	.	170	78	146	0	.	92	A	60561505	G	A	60561505	3	1	91	1	0	0	0	0	1	0	0	0	9855	1145	40	1	435	1	MS4A10	11	60561505	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	41981631	60561505	74445011	44	11878											
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70348970	70348970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SHANK2	NM_133266	exon3	c.A364T	p.N122Y	GGTGATTCCCTCC	.	148	43	102	0	.	94	A	70348970	T	A	70348970	3	1	91	1	0	0	0	0	1	0	0	0	14265	1783	62	4	3457	4	SHANK2	11	70348970	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	9787465	70348970	64657546	45	11879											
KRTAP5-7	440050	hgsc.bcm.edu;broad.mit.edu	37	11	71238649	71238675	+	In_Frame_Del	DEL	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRTAP5-7	NM_001012503	exon1	c.303_329del	p.101_110del	GCCCTGCTGCTGC	.	194	35	158	0	.	68	-	71238675	CTGCTGCTCCTCAGGCTGTGGGTCATC	-	71238649	7	5	91	1	0	1	0	1	0	0	0	0	8566	805	28	0	305	0	KRTAP5-7	11	71238649	In_Frame_Del	DEL	CTGCTGCTCCTCAGGCTGTGGGTCATC	TCGA-DD-A4NJ-01A-11D-A27I-10	889679	71238649	63767867	46	11880											
CNTN5	53942	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99827704	99827704	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CNTN5	NM_001243270	exon7	c.C840T	p.V280V	TAGAGTCCTTAGT	.	225	86	197	1	.	366	T	99827704	C	T	99827704	2	4	91	1	0	0	0	0	0	0	0	1	3644	842	30	3		3	CNTN5	11	99827704	Silent	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	28589055	99827704	35178812	47	11881											
C11orf70	85016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101952001	101952001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C11orf70	NM_032930	exon6	c.G664A	p.V222I	TTTAAAGTTTCAG	.	32	7	28	0	.	91	A	101952001	G	A	101952001	3	1	91	1	0	0	0	0	1	0	0	0	1659	1029	36	3	568	3	C11orf70	11	101952001	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	2124297	101952001	33054515	48	11882											
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	129762747	129762747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NFRKB	NM_006165	exon1	c.A37G	p.T13A	CCATTGTTTCTTC	.	174	24	153	0	.	93	C	129762747	T	C	129762747	3	2	91	1	0	0	0	0	1	0	0	0	10384	1725	60	2	4037	2	NFRKB	11	129762747	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	27810746	129762747	5243769	49	11883											
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	271125	271125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IQSEC3	NM_001170738	exon8	c.T2477A	p.L826Q	GGGAGCTGGTGGT	.	215	106	232	0	.	560	A	271125	T	A	271125	3	1	91	1	0	0	0	0	1	0	0	0	7819	1580	55	4	2507	4	IQSEC3	12	271125	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10		271125	133580770	50	11884											
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53074087	53074087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRT1	NM_006121	exon1	c.G46T	p.G16C	TGAAGCCCCCTCC	.	187	22	172	0	.	92	A	53074087	C	A	53074087	3	1	91	1	0	0	0	0	1	0	0	0	8447	623	22	3	1924	3	KRT1	12	53074087	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	52802962	53074087	80777808	51	11885											
OR6C75	390323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55759405	55759405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	OR6C75	NM_001005497	exon1	c.G511T	p.V171L	TCCAATGTAATTG	.	117	42	106	0	.	70	T	55759405	G	T	55759405	3	4	91	1	0	0	0	0	1	0	0	0	11199	1377	48	3	513	3	OR6C75	12	55759405	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	2685318	55759405	78092490	52	11886											
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56398608	56398608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SUOX	NM_000456	exon6	c.G1435A	p.E479K	GGAGAGGAACAGC	.	210	22	169	0	.	90	A	56398608	G	A	56398608	3	1	91	1	0	0	0	0	1	0	0	0	15392	1175	41	3	1445	3	SUOX	12	56398608	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	639203	56398608	77453287	53	11887											
POC1B	282809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89891089	89891089	+	Missense_Mutation	SNP	A	A	G	rs111514387		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	POC1B	NM_172240	exon3	c.T131C	p.L44P	TTCCATAGCATGA	.	157	22	87	1	A|0.500;G|0.500	92	G	89891089	A	G	89891089	3	3	91	1	0	0	0	0	1	0	0	0	12176	420	15	2	1345	2	POC1B	12	89891089	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	33492481	89891089	43960806	54	11888											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	48941636	48941636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RB1	NM_000321	exon10	c.A946T	p.N316Y	GTTGAAAATCTTT	.	11	5	23	0	.	3784	T	48941636	A	T	48941636	3	4	91	1	0	0	0	0	1	0	0	0	13098	14	1	4	984	4	RB1	13	48941636	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10		48941636	66228242	55	11889											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48951170	48951170	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	RB1,fibrous_tissue_and_uncertain_origin,malignant_fibrous_histiocytoma-pleomorphic_sarcoma,0	RB1	NM_000321	exon13	c.G1332A	p.Q444Q	ATCACAGGTAACT	.	43	21	47	0	.	3784	A	48951170	G	A	48951170	2	1	91	1	0	0	0	0	0	0	0	1	13098	1014	35	3		3	RB1	13	48951170	Silent	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	9534	48951170	66218708	56	11890											
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78202323	78202323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SNW1	NM_012245	exon7	c.C665G	p.P222R	GAAGGTGGTCCCC	.	30	9	35	0	.	187	C	78202323	G	C	78202323	3	2	91	1	0	0	0	0	1	0	0	0	14879	1348	47	4	977	4	SNW1	14	78202323	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10		78202323	29147217	57	11891											
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79434590	79434590	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NRXN3	NM_004796	exon11	c.T1924A	p.F642I	GATGGCTTTCAGG	.	196	49	169	0	.	587	A	79434590	T	A	79434590	3	1	91	1	0	0	0	0	1	0	0	0	10667	1609	56	4	1958	4	NRXN3	14	79434590	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	1232267	79434590	27914950	58	11892											
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	90651290	90651290	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNK13	NM_022054	exon2	c.G1170T	p.G390G	AGGGGGGGTGGGA	.	63	16	55	0	.	91	T	90651290	G	T	90651290	2	4	91	1	0	0	0	0	0	0	0	1	8061	1219	43	3		3	KCNK13	14	90651290	Silent	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	11216700	90651290	16698250	59	11893											
CCDC88C	440193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91780183	91780183	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CCDC88C	NM_001080414	exon15	c.G1977A	p.E659E	GACTTTCTCGGTG	.	49	17	62	1	.	25	T	91780183	C	T	91780183	2	4	91	1	0	0	0	0	0	0	0	1	2865	912	32	3		3	CCDC88C	14	91780183	Silent	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	1128893	91780183	15569357	60	11894											
HSP90AA1	3320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102551156	102551178	+	Frame_Shift_Del	DEL	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HSP90AA1	NM_001017963	exon6	c.1187_1209del	p.396_403del	CTTTTCCTTAATC	.	94	11	80	0	.	949	-	102551178	CTTAATCTTCTTCTTCTTCTTCT	-	102551156	7	5	91	1	0	1	0	1	0	0	0	0	7401	680	24	0	1383	0	HSP90AA1	14	102551156	Frame_Shift_Del	DEL	CTTAATCTTCTTCTTCTTCTTCT	TCGA-DD-A4NJ-01A-11D-A27I-10	10770973	102551156	4798384	61	11895											
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104642627	104642628	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.S1168L	CCTGACAGTCCTG	.	41	7	20	0	.	.	CT	104642628	AG	CT	104642627	3	2	91	1	0	0	0	0	1	0	0	0	8294	188	7	5	3548	5	KIF26A	14	104642627	Missense_Mutation	DNP	AG	TCGA-DD-A4NJ-01A-11D-A27I-10	2091471	104642627	2706913	62	11896											
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100594228	100594228	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAMTS17	NM_139057	exon16	c.C2169T	p.N723N	GTCACTGTTGATG	.	301	143	101	0	.	228	A	100594228	G	A	100594228	2	1	91	1	0	0	0	0	0	0	0	1	262	1368	48	3		3	ADAMTS17	15	100594228	Silent	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10		100594228	1937164	63	11897											
FLYWCH2	114984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2946481	2946481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FLYWCH2	NM_001142499	exon3	c.G31A	p.G11S	CAGGAGGGTGAGA	.	55	11	48	0	.	22	A	2946481	G	A	2946481	3	1	91	1	0	0	0	0	1	0	0	0	5948	1232	43	3	33	3	FLYWCH2	16	2946481	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10		2946481	87408272	64	11898											
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68721498	68721498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CDH3	NM_001793	exon12	c.C1654A	p.Q552K	CCCCGTCAGATCA	.	214	111	247	0	.	950	A	68721498	C	A	68721498	3	1	91	1	0	0	0	0	1	0	0	0	3111	827	29	3	1700	3	CDH3	16	68721498	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	65775017	68721498	21633255	65	11899											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29553694	29553694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NF1	NM_000267	exon18	c.T2243G	p.M748R	ATATGATGTCAAC	.	91	40	65	0	.	3353	G	29553694	T	G	29553694	3	3	91	1	0	0	0	0	1	0	0	0	10356	1464	51	5	2374	5	NF1	17	29553694	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10		29553694	51641516	66	11900											
FBXL20	84961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37421707	37421707	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXL20	NM_001184906	exon13	c.838-1G>T	.	TGTTATCTGAAAG	.	83	36	56	0	.	659	A	37421707	C	A	37421707	5	1	91	1	0	0	0	0	0	0	1	0	5717	927	32	3	389	3	FBXL20	17	37421707	Splice_Site	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	7868013	37421707	43773503	67	11901											
FZD2	2535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42635258	42635258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FZD2	NM_001466	exon1	c.G202T	p.D68Y	CAGGAGGACGCAG	.	349	22	255	0	.	660	T	42635258	G	T	42635258	3	4	91	1	0	0	0	0	1	0	0	0	6130	1174	41	3	204	3	FZD2	17	42635258	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	5213551	42635258	38559952	68	11902											
ANKFN1	162282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	54558126	54558126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANKFN1	NM_153228	exon16	c.C2047T	p.L683F	TACGAGCTCCAGA	.	129	22	71	0	.	136	T	54558126	C	T	54558126	3	4	91	1	0	0	0	0	1	0	0	0	625	797	28	3	2109	3	ANKFN1	17	54558126	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	11922868	54558126	26637084	69	11903											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10468488	10468488	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	APCDD1	NM_153000	exon2	c.C81T	p.L27L	TGCCCTCCTTCAT	.	135	51	110	0	.	90	T	10468488	C	T	10468488	2	4	91	1	0	0	0	0	0	0	0	1	765	842	30	3		3	APCDD1	18	10468488	Silent	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10		10468488	67608760	70	11904											
C19orf35	374872	hgsc.bcm.edu;bcgsc.ca	37	19	2280897	2280897	+	Missense_Mutation	SNP	C	C	T	rs146892754		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C19orf35	NM_198532	exon2	c.G34A	p.E12K	CGGGCTCGGGGGG	.	44	4	28	0	C|1.000;T|0.000	91	T	2280897	C	T	2280897	3	4	91	1	0	0	0	0	1	0	0	0	1920	893	31	1	1399	1	C19orf35	19	2280897	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10		2280897	56848086	71	11905											
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2794767	2794767	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	THOP1	NM_003249	exon3	c.A235C	p.R79R	GTTCAGAGGAATA	.	77	12	88	0	.	92	C	2794767	A	C	2794767	2	2	91	1	0	0	0	0	0	0	0	1	15868	295	11	5		5	THOP1	19	2794767	Silent	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	513870	2794767	56334216	72	11906											
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14877174	14877174	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EMR2	NM_001271052	exon6	c.C507A	p.S169S	TTGTCCGGAGGTG	.	166	39	184	1	.	524	T	14877174	G	T	14877174	2	4	91	1	0	0	0	0	0	0	0	1	5105	1103	39	1		1	EMR2	19	14877174	Silent	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	12082407	14877174	44251809	73	11907											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39018424	39018424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RYR1	NM_000540	exon73	c.G10824T	p.Q3608H	GGACCAGGTGGGT	.	120	29	113	0	.	100	T	39018424	G	T	39018424	3	4	91	1	0	0	0	0	1	0	0	0	13768	1014	35	3	11114	3	RYR1	19	39018424	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	24141250	39018424	20110559	74	11908											
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55687105	55687105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SYT5	NM_003180	exon5	c.C512G	p.P171R	AAGTGAGGGTTCA	.	351	67	273	0	.	90	C	55687105	G	C	55687105	3	2	91	1	0	0	0	0	1	0	0	0	15474	1000	35	4	668	4	SYT5	19	55687105	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	16668681	55687105	3441878	75	11909											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56244429	56244429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLRP9	NM_176820	exon2	c.C768G	p.I256M	GCTCAGGATAATT	.	49	13	48	0	.	294	C	56244429	G	C	56244429	3	2	91	1	0	0	0	0	1	0	0	0	10484	1164	41	4	2239	4	NLRP9	19	56244429	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	557324	56244429	2884554	76	11910											
ANGPT4	51378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	861812	861812	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANGPT4	NM_015985	exon6	c.951+2T>G	.	CCCCTAACCTTCC	.	144	51	118	0	.	92	C	861812	A	C	861812	5	2	91	1	0	0	0	0	0	0	1	0	612	57	2	5	578	5	ANGPT4	20	861812	Splice_Site	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10		861812	62163708	77	11911											
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2591138	2591138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMC2	NM_080751	exon12	c.A1487T	p.Y496F	AGAATTACCACCC	.	259	34	224	0	.	93	T	2591138	A	T	2591138	3	4	91	1	0	0	0	0	1	0	0	0	15982	391	14	4	1533	4	TMC2	20	2591138	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	1729326	2591138	60434382	78	11912											
LPIN3	64900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39985824	39985824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	LPIN3	NM_022896	exon15	c.A1948G	p.T650A	ACCATCACCAAGT	.	239	83	154	1	.	93	G	39985824	A	G	39985824	3	3	91	1	0	0	0	0	1	0	0	0	8920	159	6	2	2002	2	LPIN3	20	39985824	Missense_Mutation	SNP	A	TCGA-DD-A4NJ-01A-11D-A27I-10	37394686	39985824	23039696	79	11913											
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58416548	58416548	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHACTR3	NM_080672	exon11	c.G1545A	p.R515R	TGACAGGAGGGCA	.	256	38	218	0	.	93	A	58416548	G	A	58416548	2	1	91	1	0	0	0	0	0	0	0	1	11811	1165	41	3		3	PHACTR3	20	58416548	Silent	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	18430724	58416548	4608972	80	11914											
STMN3	50861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62275626	62275626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	STMN3	NM_015894	exon2	c.C56T	p.S19L	ATGAGCGACAGCA	.	126	41	85	0	.	90	A	62275626	G	A	62275626	3	1	91	1	0	0	0	0	1	0	0	0	15309	1059	37	1	502	1	STMN3	20	62275626	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	3859078	62275626	749894	81	11915											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38538717	38538717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTC3	NM_001001894	exon33	c.G4201A	p.A1401T	CAGATTGCCTCTG	.	210	61	148	0	.	590	A	38538717	G	A	38538717	3	1	91	1	0	0	0	0	1	0	0	0	16694	1319	46	3	4327	3	TTC3	21	38538717	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10		38538717	9591178	82	11916											
TMPRSS3	64699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43808542	43808542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMPRSS3	NM_001256317	exon5	c.A416G	p.N139S	GCAACATTTGCGT	.	288	94	172	0	.	155	C	43808542	T	C	43808542	3	2	91	1	0	0	0	0	1	0	0	0	16245	1493	52	2	1067	2	TMPRSS3	21	43808542	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	5269825	43808542	4321353	83	11917											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5821238	5821238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLGN4X	NM_181332	exon5	c.C1481A	p.P494H	ACATAGGGGACCT	.	589	134	431	0	.	195	T	5821238	G	T	5821238	3	4	91	1	0	0	0	0	1	0	0	0	10464	1232	43	3	977	3	NLGN4X	23	5821238	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10		5821238	149449322	84	11918											
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54978366	54978366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PFKFB1	NM_002625	exon8	c.A818C	p.D273A	CCAGAGTCACCTC	.	235	70	206	0	.	131	G	54978366	T	G	54978366	3	3	91	1	0	0	0	0	1	0	0	0	11760	1667	58	5	625	5	PFKFB1	23	54978366	Missense_Mutation	SNP	T	TCGA-DD-A4NJ-01A-11D-A27I-10	49157128	54978366	100292194	85	11919											
IRS4	8471	broad.mit.edu;mdanderson.org	37	X	107979138	107979138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRS4	NM_003604	exon1	c.G437A	p.R146H	ATCACGCGCCGCG	.	93	17	70	0	.	623	T	107979138	C	T	107979138	3	4	91	1	0	0	0	0	1	0	0	0	7842	768	27	1	3340	1	IRS4	23	107979138	Missense_Mutation	SNP	C	TCGA-DD-A4NJ-01A-11D-A27I-10	53000772	107979138	47291422	86	11920											
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153034490	153034490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PLXNB3	NM_001163257	exon6	c.G1423A	p.D475N	CTGCTGGACAGCA	.	183	10	141	0	.	130	A	153034490	G	A	153034490	3	1	91	1	0	0	0	0	1	0	0	0	12125	1174	41	3	1486	3	PLXNB3	23	153034490	Missense_Mutation	SNP	G	TCGA-DD-A4NJ-01A-11D-A27I-10	45055352	153034490	2236070	87	11921											
PLEKHM2	23207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16051919	16051919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PLEKHM2	NM_015164	exon8	c.G820A	p.E274K	TTCAACGAGGAGC	.	127	49	158	1	.	23	A	16051919	G	A	16051919	3	1	92	1	0	0	0	0	1	0	0	0	12081	1059	37	1	850	1	PLEKHM2	1	16051919	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		16051919	233198702	1	11922											
RSPO1	284654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38082337	38082337	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RSPO1	NM_001242910	exon4	c.G105A	p.E35E	GCTCCCCTCGGCA	.	199	80	268	2	.	22	T	38082337	C	T	38082337	2	4	92	1	0	0	0	0	0	0	0	1	13709	680	24	3		3	RSPO1	1	38082337	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	22030418	38082337	211168284	2	11923											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39920643	39920643	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MACF1	NM_012090	exon86	c.T14772A	p.A4924A	GGTGGCTAATGCT	.	92	6	135	0	.	165	A	39920643	T	A	39920643	2	1	92	1	0	0	0	0	0	0	0	1	9144	1509	53	4		4	MACF1	1	39920643	Silent	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	1838306	39920643	209329978	3	11924											
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44415602	44415602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	IPO13	NM_014652	exon2	c.G598A	p.A200T	TGTGGGGCTGTCT	.	51	21	58	0	.	226	A	44415602	G	A	44415602	3	1	92	1	0	0	0	0	1	0	0	0	7794	1203	42	3	604	3	IPO13	1	44415602	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	4494959	44415602	204835019	4	11925											
BEND5	79656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	49208383	49208383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BEND5	NM_024603	exon4	c.G806A	p.R269Q	GTGCTCCGTAACT	.	61	11	79	0	.	91	T	49208383	C	T	49208383	3	4	92	1	0	0	0	0	1	0	0	0	1401	652	23	1	471	1	BEND5	1	49208383	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	4792781	49208383	200042238	5	11926											
HFE2	148738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145416462	145416462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	HFE2	NM_213653	exon4	c.C807A	p.N269K	TGCTAACCCTGGG	.	132	38	148	0	.	91	A	145416462	C	A	145416462	3	1	92	1	0	0	0	0	1	0	0	0	7082	506	18	3	817	3	HFE2	1	145416462	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	96208079	145416462	103834159	6	11927											
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223177045	223177045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DISP1	NM_032890	exon10	c.A2306G	p.K769R	AATACAAAAAGCT	.	198	114	181	0	.	68	G	223177045	A	G	223177045	3	3	92	1	0	0	0	0	1	0	0	0	4539	14	1	2	2332	2	DISP1	1	223177045	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	77760583	223177045	26073576	7	11928											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228526698	228526698	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OBSCN	NM_001271223	exon80	c.T20100C	p.N6700N	CCGCAATGTGCGG	.	278	86	259	0	.	403	C	228526698	T	C	228526698	2	2	92	1	0	0	0	0	0	0	0	1	10812	1461	51	2		2	OBSCN	1	228526698	Silent	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	5349653	228526698	20723923	8	11929											
OR2T6	254879	ucsc.edu;bcgsc.ca	37	1	248551236	248551236	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR2T6	NM_001005471	exon1	c.G327T	p.G109G	TATGGGGGCTGAA	.	154	53	114	2	.	71	T	248551236	G	T	248551236	2	4	92	1	0	0	0	0	0	0	0	1	11029	1219	43	3		3	OR2T6	1	248551236	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	20024538	248551236	699385	9	11930											
TSSC1	7260	broad.mit.edu;bcgsc.ca	37	2	3217959	3217959	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TSSC1	NM_003310	exon5	c.C477T	p.I159I	CAGCAGGATATGG	.	108	43	99	2	.	90	A	3217959	G	A	3217959	2	1	92	1	0	0	0	0	0	0	0	1	16663	1164	41	3		3	TSSC1	2	3217959	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		3217959	239981414	10	11931											
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63832431	63832431	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MDH1	NM_001199111	exon7	c.C747T	p.G249G	GCGTGGCGCTGCT	.	119	50	123	0	.	537	T	63832431	C	T	63832431	2	4	92	1	0	0	0	0	0	0	0	1	9408	755	27	1		1	MDH1	2	63832431	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	60614472	63832431	179366942	11	11932											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80801440	80801440	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CTNNA2	NM_004389	exon13	c.1893+1G>T	.	ATCAGGGTATGTG	.	128	43	148	0	.	368	T	80801440	G	T	80801440	5	4	92	1	0	0	0	0	0	0	1	0	4013	1275	44	3	1732	3	CTNNA2	2	80801440	Splice_Site	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	16969009	80801440	162397933	12	11933											
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	97360146	97360146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FER1L5	NM_001113382	exon33	c.G3767A	p.G1256E	AGAATGGGGCATA	.	83	28	103	0	.	23	A	97360146	G	A	97360146	3	1	92	1	0	0	0	0	1	0	0	0	5814	1232	43	3	3897	3	FER1L5	2	97360146	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	16558706	97360146	145839227	13	11934											
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116534805	116534805	+	Missense_Mutation	SNP	G	G	A	rs150929011		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	DPP10,NS,carcinoma,0	DPP10	NM_001178034	exon14	c.G1255A	p.V419M	ATTACCGTGCGGC	.	185	10	205	0	G|1.000;A|0.000	142	A	116534805	G	A	116534805	3	1	92	1	0	0	0	0	1	0	0	0	4727	1145	40	1	1468	1	DPP10	2	116534805	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	19174659	116534805	126664568	14	11935											
ACVR2A	92	hgsc.bcm.edu;bcgsc.ca	37	2	148684653	148684659	+	Frame_Shift_Del	DEL	TGGCAAT	TGGCAAT	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	TGGCAAT	TGGCAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ACVR2A	NM_001616	exon11	c.1352_1358del	p.451_453del	AGGGAATGGCAAT	.	71	13	116	0	.	831	-	148684659	TGGCAAT	-	148684653	7	5	92	1	0	1	0	1	0	0	0	0	223	1464	51	0	1394	0	ACVR2A	2	148684653	Frame_Shift_Del	DEL	TGGCAAT	TCGA-DD-A4NK-01A-11D-A28X-10	32149848	148684653	94514720	15	11936											
GPR1	2825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207040977	207040977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GPR1	NM_001098199	exon3	c.G995A	p.C332Y	CCAGAACAGCTGA	.	110	45	123	0	.	90	T	207040977	C	T	207040977	3	4	92	1	0	0	0	0	1	0	0	0	6621	478	17	3	76	3	GPR1	2	207040977	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	58356324	207040977	36158396	16	11937											
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233345176	233345176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ECEL1	NM_004826	exon17	c.A2161G	p.I721V	GCTTGATGCACCA	.	112	47	138	0	.	90	C	233345176	T	C	233345176	3	2	92	1	0	0	0	0	1	0	0	0	4891	1464	51	2	174	2	ECEL1	2	233345176	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	26304199	233345176	9854197	17	11938											
BHLHE40	8553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	5025203	5025203	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BHLHE40	NM_003670	exon5	c.C1065T	p.L355L	AGGCCTCAACGCC	.	104	40	158	1	.	91	T	5025203	C	T	5025203	2	4	92	1	0	0	0	0	0	0	0	1	1423	813	29	3		3	BHLHE40	3	5025203	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10		5025203	192997227	18	11939											
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14548392	14548392	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GRIP2	.	.	.	.	GAGAAGCGGGCTG	.	153	70	198	1	.	69	T	14548392	C	T	14548392	1	4	92	0	1	0	0	0	0	0	0	0	6788	768	27	1		1	GRIP2	3	14548392	RNA	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	9523189	14548392	183474038	19	11940											
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32757737	32757737	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CNOT10	NM_001256742	exon6	c.A774G	p.K258K	CAACAAAGATGGA	.	126	56	173	0	.	91	G	32757737	A	G	32757737	2	3	92	1	0	0	0	0	0	0	0	1	3618	69	3	2		2	CNOT10	3	32757737	Silent	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	18209345	32757737	165264693	20	11941											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	A	rs121913409	bycluster	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	CTNNB1,NS,carcinoma,+1	CTNNB1	NM_001098209	exon3	c.C134A	p.S45Y	CTCCTTCTCTGAG	.	118	57	225	0	.	24361	A	41266137	C	A	41266137	3	1	92	1	0	0	0	0	1	0	0	0	4016	913	32	3	140	3	CTNNB1	3	41266137	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	8508400	41266137	156756293	21	11942											
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172643141	172643141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SPATA16	NM_031955	exon7	c.T1223A	p.F408Y	CCTGTGAATATCG	.	93	33	103	0	.	94	T	172643141	A	T	172643141	3	4	92	1	0	0	0	0	1	0	0	0	15000	246	9	4	506	4	SPATA16	3	172643141	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	131377004	172643141	25379289	22	11943											
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190126207	190126207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLDN16	NM_006580	exon4	c.G697A	p.G233S	AAATTTGGTTGGT	.	110	38	136	0	.	227	A	190126207	G	A	190126207	3	1	92	1	0	0	0	0	1	0	0	0	3477	1348	47	3	711	3	CLDN16	3	190126207	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	17483066	190126207	7896223	23	11944											
BST1	683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15709230	15709230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BST1	NM_004334	exon3	c.G412A	p.A138T	AGGGTTGCAGATT	.	115	44	140	0	.	90	A	15709230	G	A	15709230	3	1	92	1	0	0	0	0	1	0	0	0	1533	1319	46	3	422	3	BST1	4	15709230	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		15709230	175445046	24	11945											
TMPRSS11E	28983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69343131	69343131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TMPRSS11E	NM_014058	exon8	c.T752C	p.I251T	TAACAATAAAACC	.	179	80	187	1	.	70	C	69343131	T	C	69343131	3	2	92	1	0	0	0	0	1	0	0	0	16239	1406	49	2	782	2	TMPRSS11E	4	69343131	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	53633901	69343131	121811145	25	11946											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274521	74274524	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ALB	NM_000477	exon4	c.481_482del	p.161_161del	TTGAAAAAGTAAG	.	47	13	57	0	.	96	-	74274524	AAGT	-	74274521	7	5	92	1	0	1	0	1	0	0	0	0	486	28	1	0	495	0	ALB	4	74274521	Frame_Shift_Del	DEL	AAGT	TCGA-DD-A4NK-01A-11D-A28X-10	4931390	74274521	116879755	26	11947											
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100235183	100235183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ADH1B	NM_000668	exon6	c.C623T	p.A208V	ATAACAGCAGATA	.	217	49	331	0	.	136	A	100235183	G	A	100235183	3	1	92	1	0	0	0	0	1	0	0	0	308	971	34	3	520	3	ADH1B	4	100235183	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	25960662	100235183	90919093	27	11948											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu	37	4	126372517	126372517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FAT4	NM_024582	exon9	c.A10346T	p.E3449V	GGAATGAAAATGG	.	93	4	134	0	.	108	T	126372517	A	T	126372517	3	4	92	1	0	0	0	0	1	0	0	0	5692	246	9	4	10380	4	FAT4	4	126372517	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	26137334	126372517	64781759	28	11949											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126400895	126400895	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FAT4	NM_024582	exon14	c.12474-1G>A	.	ATTTTAGATGCCC	.	43	14	58	0	.	108	A	126400895	G	A	126400895	5	1	92	1	0	0	0	0	0	0	1	0	5692	956	33	3	12527	3	FAT4	4	126400895	Splice_Site	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	28378	126400895	64753381	29	11950											
KIAA0947	23379	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	5463008	5463008	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KIAA0947	NM_015325	exon13	c.T3561A	p.Y1187X	GGATTATAGTTCA	.	109	30	123	1	.	48	A	5463008	T	A	5463008	4	1	92	1	0	0	0	0	0	1	0	0	8202	1413	49	4	3611	4	KIAA0947	5	5463008	Nonsense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10		5463008	175452252	30	11951											
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	54763977	54763977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PPAP2A	NM_176895	exon3	c.A214G	p.I72V	GAATAATCTGAAA	.	77	21	62	0	.	92	C	54763977	T	C	54763977	3	2	92	1	0	0	0	0	1	0	0	0	12290	1449	50	2	659	2	PPAP2A	5	54763977	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	49300969	54763977	126151283	31	11952											
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74981292	74981292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	POC5	NM_001099271	exon10	c.A1147C	p.N383H	TTTTATTATTTGT	.	87	50	67	0	.	45	G	74981292	T	G	74981292	3	3	92	1	0	0	0	0	1	0	0	0	12177	1754	61	5	592	5	POC5	5	74981292	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	20217315	74981292	105933968	32	11953											
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112926896	112926896	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	YTHDC2	NM_022828	exon27	c.C3984T	p.S1328S	AAGCAGCATAGTT	.	147	38	158	0	.	92	T	112926896	C	T	112926896	2	4	92	1	0	0	0	0	0	0	0	1	17494	709	25	3		3	YTHDC2	5	112926896	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	37945604	112926896	67988364	33	11954											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137734001	137734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KDM3B	NM_016604	exon10	c.A2966G	p.Y989C	CAAAATACATCCT	.	228	76	204	0	.	542	G	137734001	A	G	137734001	3	3	92	1	0	0	0	0	1	0	0	0	8127	391	14	2	3004	2	KDM3B	5	137734001	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	24807105	137734001	43181259	34	11955											
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30627293	30627293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DHX16	NM_003587	exon12	c.A1963G	p.M655V	CCTGCATGTCAGA	.	182	44	130	2	.	228	C	30627293	T	C	30627293	3	2	92	1	0	0	0	0	1	0	0	0	4502	1464	51	2	1198	2	DHX16	6	30627293	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10		30627293	140487774	35	11956											
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42957352	42957352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PPP2R5D	NM_180976	exon2	c.C31T	p.P11S	CAGGAGCCCCCCA	.	69	20	87	0	.	1082	T	42957352	C	T	42957352	3	4	92	1	0	0	0	0	1	0	0	0	12395	739	26	3	37	3	PPP2R5D	6	42957352	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	12330059	42957352	128157715	36	11957											
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46620284	46620284	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CYP39A1	NM_016593	exon1	c.G36A	p.L12L	GCAACCCAGGATT	.	125	36	97	0	.	91	T	46620284	C	T	46620284	2	4	92	1	0	0	0	0	0	0	0	1	4177	581	21	3		3	CYP39A1	6	46620284	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	3662932	46620284	124494783	37	11958											
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146275926	146275926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SHPRH	NM_173082	exon2	c.A533T	p.E178V	GATGACTCCACCA	.	35	26	50	0	.	92	A	146275926	T	A	146275926	3	1	92	1	0	0	0	0	1	0	0	0	14291	1551	54	4	4678	4	SHPRH	6	146275926	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	99655642	146275926	24839141	38	11959											
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2294745	2294745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SNX8	NM_013321	exon11	c.C1344G	p.H448Q	GGTGCTGTGTGGT	.	189	34	152	0	.	290	C	2294745	G	C	2294745	3	2	92	1	0	0	0	0	1	0	0	0	14908	1368	48	4	57	4	SNX8	7	2294745	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		2294745	156843918	39	11960											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4153733	4153733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SDK1	NM_152744	exon25	c.G3650A	p.R1217H	ACTGGCGCTCAGA	.	188	42	165	0	.	138	A	4153733	G	A	4153733	3	1	92	1	0	0	0	0	1	0	0	0	13968	1087	38	1	3748	1	SDK1	7	4153733	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	1858988	4153733	154984930	40	11961											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24758744	24758744	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DFNA5	NM_001127453	exon4	c.G498A	p.Q166Q	ACACTTCTGCATC	.	178	26	145	0	.	91	T	24758744	C	T	24758744	2	4	92	1	0	0	0	0	0	0	0	1	4454	912	32	3		3	DFNA5	7	24758744	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	20605011	24758744	134379919	41	11962											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48287835	48287835	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ABCA13	NM_152701	exon14	c.1660-1G>T	.	TGTTAAGGATCGT	.	106	74	88	0	.	521	T	48287835	G	T	48287835	5	4	92	1	0	0	0	0	0	0	1	0	31	1014	35	3	1542	3	ABCA13	7	48287835	Splice_Site	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	23529091	48287835	110850828	42	11963											
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87912273	87912273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	STEAP4	NM_001205315	exon4	c.G667A	p.V223I	AGATTACGTCTCT	.	131	63	104	0	.	90	T	87912273	C	T	87912273	3	4	92	1	0	0	0	0	1	0	0	0	15279	536	19	1	724	1	STEAP4	7	87912273	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	39624438	87912273	71226390	43	11964											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100344318	100344318	+	RNA	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ZAN	.	.	.	.	TGCTTCAGTCTTG	.	132	73	95	0	.	142	T	100344318	A	T	100344318	1	4	92	0	1	0	0	0	0	0	0	0	17510	175	7	4		4	ZAN	7	100344318	RNA	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	12432045	100344318	58794345	44	11965											
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	54792096	54792096	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RGS20	NM_170587	exon2	c.G444A	p.R148R	GCTGAGGCCCCCC	.	142	81	131	0	.	227	A	54792096	G	A	54792096	2	1	92	1	0	0	0	0	0	0	0	1	13303	1194	42	3		3	RGS20	8	54792096	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		54792096	91571926	45	11966											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55540553	55540553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RP1	NM_006269	exon4	c.G4111C	p.D1371H	CAGAAAGATCTAA	.	63	35	67	0	.	102	C	55540553	G	C	55540553	3	2	92	1	0	0	0	0	1	0	0	0	13532	942	33	4	4121	4	RP1	8	55540553	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	748457	55540553	90823469	46	11967											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777771	18777771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ADAMTSL1	NM_001040272	exon19	c.G3544A	p.V1182I	GAGGTGGTCACCC	.	185	33	199	0	.	230	A	18777771	G	A	18777771	3	1	92	1	0	0	0	0	1	0	0	0	274	1261	44	3	3622	3	ADAMTSL1	9	18777771	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		18777771	122435660	47	11968											
APBA1	320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	72131731	72131731	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	APBA1	NM_001163	exon2	c.G396A	p.Q132Q	CTCTGCCTGCTCC	.	27	12	56	0	.	91	T	72131731	C	T	72131731	2	4	92	1	0	0	0	0	0	0	0	1	756	680	24	3		3	APBA1	9	72131731	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	53353960	72131731	69081700	48	11969											
FGD3	89846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95738644	95738644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FGD3	NM_001083536	exon3	c.C106T	p.P36S	GCGCTCCCTGTTG	.	117	40	163	1	.	228	T	95738644	C	T	95738644	3	4	92	1	0	0	0	0	1	0	0	0	5834	623	22	3	108	3	FGD3	9	95738644	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	23606913	95738644	45474787	49	11970											
PTCH1	5727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98231224	98231224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PTCH1	NM_000264	exon14	c.G2059T	p.V687L	GCTGCACAGAGAT	.	138	48	158	1	.	3532	A	98231224	C	A	98231224	3	1	92	1	0	0	0	0	1	0	0	0	12730	478	17	3	2324	3	PTCH1	9	98231224	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	2492580	98231224	42982207	50	11971											
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113509934	113509934	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MUSK	NM_001166280	exon8	c.C797G	p.S266C	CTGGGTCCATTCA	.	85	32	84	0	.	1379	G	113509934	C	G	113509934	3	3	92	1	0	0	0	0	1	0	0	0	9989	855	30	4	827	4	MUSK	9	113509934	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	15278710	113509934	27703497	51	11972											
TMEM203	94107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140099480	140099491	+	In_Frame_Del	DEL	CATGAGCAGCTG	CATGAGCAGCTG	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	CATGAGCAGCTG	CATGAGCAGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TMEM203	NM_053045	exon1	c.376_387del	p.126_129del	GCGGATCATGAGC	.	61	16	104	0	.	22	-	140099491	CATGAGCAGCTG	-	140099480	7	5	92	1	0	1	0	1	0	0	0	0	16125	826	29	0	27	0	TMEM203	9	140099480	In_Frame_Del	DEL	CATGAGCAGCTG	TCGA-DD-A4NK-01A-11D-A28X-10	26589546	140099480	1113951	52	11973											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55591092	55591092	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PCDH15	NM_001142763	exon31	c.T4200C	p.V1400V	GACCAAAACCACC	.	107	40	168	0	.	193	G	55591092	A	G	55591092	2	3	92	1	0	0	0	0	0	0	0	1	11511	1	1	2		2	PCDH15	10	55591092	Silent	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10		55591092	79943655	53	11974											
RTKN2	219790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64022532	64022532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RTKN2	NM_145307	exon2	c.G109A	p.G37R	ATATTCCTTCTCG	.	44	21	78	1	.	68	T	64022532	C	T	64022532	3	4	92	1	0	0	0	0	1	0	0	0	13723	690	24	3	1764	3	RTKN2	10	64022532	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	8431440	64022532	71512215	54	11975											
RBP4	5950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	95360550	95360550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RBP4	NM_006744	exon3	c.C122T	p.T41I	TACCAGGTCCCAG	.	208	32	311	0	.	90	A	95360550	G	A	95360550	3	1	92	1	0	0	0	0	1	0	0	0	13158	1261	44	3	499	3	RBP4	10	95360550	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	31338018	95360550	40174197	55	11976											
OR5M8	219484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56258001	56258001	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR5M8	NM_001005282	exon1	c.T846A	p.P282P	CAGCATAGGGATT	.	46	15	45	0	.	68	T	56258001	A	T	56258001	2	4	92	1	0	0	0	0	0	0	0	1	11176	407	15	4		4	OR5M8	11	56258001	Silent	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10		56258001	78748515	56	11977											
UBXN1	51035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62445539	62445539	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	UBXN1	NM_015853	exon5	c.342delA	p.E114fs	CTCCCGTTCCTCT	.	66	28	92	0	.	90	-	62445539	T	-	62445539	7	5	92	1	0	1	0	1	0	0	0	0	16908	1722	60	0	612	0	UBXN1	11	62445539	Frame_Shift_Del	DEL	T	TCGA-DD-A4NK-01A-11D-A28X-10	6187538	62445539	72560977	57	11978											
CTTN	2017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70269063	70269063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CTTN	NM_005231	exon12	c.G919A	p.G307S	GGATTCGGCGGGA	.	350	137	413	0	.	227	A	70269063	G	A	70269063	3	1	92	1	0	0	0	0	1	0	0	0	4044	1116	39	1	957	1	CTTN	11	70269063	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	7823524	70269063	64737453	58	11979											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73020363	73020363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ARHGEF17	NM_014786	exon1	c.C680A	p.A227D	CCGGGGCCCGGGC	.	138	55	191	0	.	227	A	73020363	C	A	73020363	3	1	92	1	0	0	0	0	1	0	0	0	900	739	26	3	682	3	ARHGEF17	11	73020363	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	2751300	73020363	61986153	59	11980											
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112070431	112070431	+	Missense_Mutation	SNP	A	A	G	rs146824071	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BCO2	NM_031938	exon6	c.A746G	p.Y249C	TCTCCTATAAGGT	.	62	26	64	0	A|0.998;G|0.002	68	G	112070431	A	G	112070431	3	3	92	1	0	0	0	0	1	0	0	0	1385	449	16	2	768	2	BCO2	11	112070431	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	39050068	112070431	22936085	60	11981											
STAB2	55576	broad.mit.edu;mdanderson.org	37	12	104136328	104136328	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	STAB2	NM_017564	exon56	c.T6027A	p.C2009X	TGATTGTCTGCGT	.	195	13	249	1	.	104	A	104136328	T	A	104136328	4	1	92	1	0	0	0	0	0	1	0	0	15237	1673	58	4	6249	4	STAB2	12	104136328	Nonsense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10		104136328	29715567	61	11982											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39264849	39264849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FREM2	NM_207361	exon1	c.G3368A	p.G1123D	CACCAGGCTCTGA	.	51	6	64	0	.	100	A	39264849	G	A	39264849	3	1	92	1	0	0	0	0	1	0	0	0	6045	1203	42	3	3370	3	FREM2	13	39264849	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		39264849	75905029	62	11983											
PIBF1	10464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73468073	73468073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PIBF1	NM_006346	exon11	c.C1474A	p.Q492K	AAATATCAGAAAA	.	115	35	148	0	.	136	A	73468073	C	A	73468073	3	1	92	1	0	0	0	0	1	0	0	0	11879	827	29	3	1512	3	PIBF1	13	73468073	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	34203224	73468073	41701805	63	11984											
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65252575	65252575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SPTB	NM_001024858	exon16	c.A3656G	p.N1219S	CGGTTGTTCTCCA	.	55	25	67	0	.	100	C	65252575	T	C	65252575	3	2	92	1	0	0	0	0	1	0	0	0	15117	1725	60	2	3479	2	SPTB	14	65252575	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10		65252575	42096965	64	11985											
VSX2	338917	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	74706315	74706315	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	VSX2	NM_182894	exon1	c.G51A	p.V17V	GACAGTGGCCAAG	.	76	8	101	1	.	69	A	74706315	G	A	74706315	2	1	92	1	0	0	0	0	0	0	0	1	17229	1335	47	3		3	VSX2	14	74706315	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	9453740	74706315	32643225	65	11986											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41988802	41988802	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MGA	NM_001080541	exon3	c.A1594T	p.K532X	CTTAGAAAACATT	.	79	8	65	0	.	522	T	41988802	A	T	41988802	4	4	92	1	0	0	0	0	0	1	0	0	9540	15	1	4	1600	4	MGA	15	41988802	Nonsense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10		41988802	60542590	66	11987											
LDHAL6B	92483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59499173	59499173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LDHAL6B	NM_033195	exon1	c.C34A	p.Q12K	GCCAGCCAGAGAG	.	104	38	121	0	.	226	A	59499173	C	A	59499173	3	1	92	1	0	0	0	0	1	0	0	0	8700	595	21	3	36	3	LDHAL6B	15	59499173	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	17510371	59499173	43032219	67	11988											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88423567	88423567	+	Silent	SNP	G	G	A	rs79813886		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NTRK3	NM_001012338	exon19	c.C2268T	p.F756F	CACCCCGAAGCTC	.	77	37	120	0	G|0.999;A|0.001	3538	A	88423567	G	A	88423567	2	1	92	1	0	0	0	0	0	0	0	1	10708	1049	37	1		1	NTRK3	15	88423567	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	28924394	88423567	14107825	68	11989											
OR1F1	4992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3254987	3254987	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR1F1	NM_012360	exon1	c.G741A	p.V247V	GGCTGTGGTTCTC	.	155	44	217	0	.	68	A	3254987	G	A	3254987	2	1	92	1	0	0	0	0	0	0	0	1	10956	1335	47	3		3	OR1F1	16	3254987	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		3254987	87099766	69	11990											
MYH11	4629	broad.mit.edu;bcgsc.ca	37	16	15853534	15853534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MYH11	NM_001040114	exon13	c.C1321T	p.R441C	TCCAGCGGAAAAG	.	182	8	201	1	.	666	A	15853534	G	A	15853534	3	1	92	1	0	0	0	0	1	0	0	0	10031	1116	39	1	4773	1	MYH11	16	15853534	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	12598547	15853534	74501219	70	11991											
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28846465	28846465	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATXN2L	NM_148414	exon19	c.T2520A	p.P840P	TACCCCTCAGTAC	.	118	38	154	0	.	92	A	28846465	T	A	28846465	2	1	92	1	0	0	0	0	0	0	0	1	1212	1538	54	4		4	ATXN2L	16	28846465	Silent	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	12992931	28846465	61508288	71	11992											
HIRIP3	8479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30005727	30005728	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	HIRIP3	NM_003609	exon4	c.739_740insA	p.E247fs	CTTTCTCTTCCTC	.	54	21	70	0	.	90	T	30005728	-	T	30005727	7	5	92	1	0	1	1	0	0	0	0	0	7121	922	32	0	947	0	HIRIP3	16	30005727	Frame_Shift_Ins	INS	-	TCGA-DD-A4NK-01A-11D-A28X-10	1159262	30005727	60349026	72	11993											
SIAH1	6477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	48396330	48396330	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SIAH1	NM_001006610	exon2	c.C103T	p.Q35X	CAGTCTGACGGCT	.	186	71	237	0	.	415	A	48396330	G	A	48396330	4	1	92	1	0	0	0	0	0	1	0	0	14299	1299	45	3	842	3	SIAH1	16	48396330	Nonsense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	18390603	48396330	41958423	73	11994											
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68842624	68842624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDH1	NM_004360	exon5	c.A560G	p.K187R	AAGGCAAGGTTTT	.	54	23	76	0	.	3377	G	68842624	A	G	68842624	3	3	92	1	0	0	0	0	1	0	0	0	3095	72	3	2	578	2	CDH1	16	68842624	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	20446294	68842624	21512129	74	11995											
GAS2L2	246176	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	34079749	34079749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GAS2L2	NM_139285	exon1	c.T121A	p.W41R	GAAGCCACTCAGC	.	183	15	215	1	.	227	T	34079749	A	T	34079749	3	4	92	1	0	0	0	0	1	0	0	0	6247	159	6	4	2545	4	GAS2L2	17	34079749	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10		34079749	47115461	75	11996											
MLLT6	4302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36876674	36876674	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MLLT6	NM_005937	exon15	c.G2205A	p.R735R	CCAGCGGCTGCAA	.	112	41	109	0	.	659	A	36876674	G	A	36876674	2	1	92	1	0	0	0	0	0	0	0	1	9630	1190	42	3		3	MLLT6	17	36876674	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	2796925	36876674	44318536	76	11997											
KRT39	390792	broad.mit.edu;mdanderson.org	37	17	39116562	39116562	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_213656	exon6	c.C1188T	p.Y396Y	GCTGCGGTATGTG	.	34	12	51	0	.	.	A	39116562	G	A	39116562	2	1	92	1	0	0	0	0	0	0	0	1	8476	1256	44	3		3	KRT39	17	39116562	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	2239888	39116562	42078648	77	11998											
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44060964	44060964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MAPT	NM_001123066	exon6	c.T794A	p.I265N	GTGCCATCCCCCT	.	77	26	94	0	.	91	A	44060964	T	A	44060964	3	1	92	1	0	0	0	0	1	0	0	0	9297	1435	50	4	812	4	MAPT	17	44060964	Missense_Mutation	SNP	T	TCGA-DD-A4NK-01A-11D-A28X-10	4944402	44060964	37134246	78	11999											
CDK3	1018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73998495	73998495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDK3	NM_001258	exon5	c.A482G	p.H161R	ACACCCATGAGGT	.	62	21	82	0	.	521	G	73998495	A	G	73998495	3	3	92	1	0	0	0	0	1	0	0	0	3140	217	8	2	496	2	CDK3	17	73998495	Missense_Mutation	SNP	A	TCGA-DD-A4NK-01A-11D-A28X-10	29937531	73998495	7196715	79	12000											
ELAC1	55520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48510804	48510804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ELAC1	NM_018696	exon3	c.C496A	p.L166I	TCATACCTTCTGT	.	95	48	152	1	.	90	A	48510804	C	A	48510804	3	1	92	1	0	0	0	0	1	0	0	0	5046	681	24	3	502	3	ELAC1	18	48510804	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10		48510804	29566444	80	12001											
DUS3L	56931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5789643	5789643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DUS3L	NM_020175	exon3	c.G475T	p.G159C	GGGGGCCCAGGTC	.	111	60	110	1	.	90	A	5789643	C	A	5789643	3	1	92	1	0	0	0	0	1	0	0	0	4807	623	22	3	1521	3	DUS3L	19	5789643	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10		5789643	53339340	81	12002											
FBN3	84467	broad.mit.edu;bcgsc.ca	37	19	8138130	8138130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FBN3	NM_032447	exon61	c.G7754A	p.R2585H	GTGTTGCGACAGG	.	282	19	455	2	.	100	T	8138130	C	T	8138130	3	4	92	1	0	0	0	0	1	0	0	0	5704	768	27	1	687	1	FBN3	19	8138130	Missense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	2348487	8138130	50990853	82	12003											
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38912649	38912649	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RASGRP4	NM_001146206	exon2	c.C168T	p.C56C	TTCGCTGCAGCCG	.	81	34	81	0	.	660	A	38912649	G	A	38912649	2	1	92	1	0	0	0	0	0	0	0	1	13077	1311	46	3		3	RASGRP4	19	38912649	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	30774519	38912649	20216334	83	12004											
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44676265	44676265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_015919	exon4	c.G40T	p.A14S	GACGTGGCTGTGG	.	130	52	172	0	.	.	T	44676265	G	T	44676265	3	4	92	1	0	0	0	0	1	0	0	0	17777	1203	42	3	46	3	ZNF226	19	44676265	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	5763616	44676265	14452718	84	12005											
NR1H2	7376	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	50881836	50881836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NR1H2	NM_007121	exon6	c.C530A	p.S177X	AGGAGTCACAGTC	.	65	27	91	0	.	186	A	50881836	C	A	50881836	4	1	92	1	0	0	0	0	0	1	0	0	10617	838	29	3	544	3	NR1H2	19	50881836	Nonsense_Mutation	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	6205571	50881836	8247147	85	12006											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41416175	41416175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DSCAM	NM_001271534	exon31	c.C5213A	p.A1738D	GGCCCAGCCTTGG	.	113	45	141	0	.	101	T	41416175	G	T	41416175	3	4	92	1	0	0	0	0	1	0	0	0	4768	971	34	3	837	3	DSCAM	21	41416175	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10		41416175	6713720	86	12007											
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu	37	22	19211532	19211532	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLTCL1	NM_001835	exon14	c.2174delC	p.P725fs	ACATCTGGGTCTT	.	176	11	267	0	.	230	-	19211532	G	-	19211532	7	5	92	1	0	1	0	1	0	0	0	0	3567	1348	47	0	2824	0	CLTCL1	22	19211532	Frame_Shift_Del	DEL	G	TCGA-DD-A4NK-01A-11D-A28X-10		19211532	32093034	87	12008											
CDC45	8318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19481906	19481906	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDC45	NM_001178011	exon5	c.404+1G>T	.	CCGGAGGTGAGTC	.	139	46	199	0	.	227	T	19481906	G	T	19481906	5	4	92	1	0	0	0	0	0	0	1	0	3081	1275	44	3	565	3	CDC45	22	19481906	Splice_Site	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	270374	19481906	31822660	88	12009											
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38212648	38212648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GCAT	NM_001171690	exon9	c.G1261A	p.V421M	TCAGCAGTGCATA	.	126	44	127	0	.	90	A	38212648	G	A	38212648	3	1	92	1	0	0	0	0	1	0	0	0	6284	1029	36	3	1295	3	GCAT	22	38212648	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	18730742	38212648	13091918	89	12010											
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38369604	38369604	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SOX10	NM_006941	exon4	c.G1299A	p.R433R	GAGGGGCCGCTGC	.	38	14	40	0	.	650	T	38369604	C	T	38369604	2	4	92	1	0	0	0	0	0	0	0	1	14941	726	26	3		3	SOX10	22	38369604	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	156956	38369604	12934962	90	12011											
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54566597	54566597	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GNL3L	NM_001184819	exon4	c.C111A	p.T37T	AGCAACCTCCAAA	.	288	99	342	0	.	131	A	54566597	C	A	54566597	2	1	92	1	0	0	0	0	0	0	0	1	6538	668	24	3		3	GNL3L	23	54566597	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10		54566597	100703963	91	12012											
ATRX	546	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	X	76938217	76938217	+	Missense_Mutation	SNP	G	G	A	rs139131007	byfrequency;alternate_allele	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATRX	NM_000489	exon9	c.C2531T	p.T844I	TCTTTTGTATTTG	.	14	5	12	0	G|0.999;T|0.001	248	A	76938217	G	A	76938217	3	1	92	1	0	0	0	0	1	0	0	0	1208	1377	48	3	5055	3	ATRX	23	76938217	Missense_Mutation	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	22371620	76938217	78332343	92	12013											
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149671633	149671633	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MAMLD1	NM_005491	exon5	c.G2130C	p.G710G	CCTGGGGAGTGAG	.	355	130	412	0	.	130	C	149671633	G	C	149671633	2	2	92	1	0	0	0	0	0	0	0	1	9208	1161	41	4		4	MAMLD1	23	149671633	Silent	SNP	G	TCGA-DD-A4NK-01A-11D-A28X-10	72733416	149671633	5598927	93	12014											
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153135689	153135689	+	Silent	SNP	C	C	A	rs201381558	alternate_allele	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	L1CAM	NM_000425	exon8	c.G813T	p.T271T	GGTGGGCGTGGGA	.	105	29	133	0	.	138	A	153135689	C	A	153135689	2	1	92	1	0	0	0	0	0	0	0	1	8588	755	27	1		1	L1CAM	23	153135689	Silent	SNP	C	TCGA-DD-A4NK-01A-11D-A28X-10	3464056	153135689	2134871	94	12015											
NKAIN1	79570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	31654558	31654558	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	NKAIN1	NM_024522	exon7	c.T616A	p.S206T	ACCCCGACCTGCG	.	291	82	274	0	.	91	T	31654558	A	T	31654558	3	4	93	1	0	0	0	0	1	0	0	0	10435	289	10	4	11	4	NKAIN1	1	31654558	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		31654558	217596063	1	12016											
ZNF362	149076	broad.mit.edu;bcgsc.ca	37	1	33745866	33745866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF362	NM_152493	exon5	c.T491A	p.I164N	CCCTCATCTCAGG	.	336	19	387	1	.	68	A	33745866	T	A	33745866	3	1	93	1	0	0	0	0	1	0	0	0	17865	1435	50	4	505	4	ZNF362	1	33745866	Missense_Mutation	SNP	T	TCGA-DD-A4NL-01A-11D-A28X-10	2091308	33745866	215504755	2	12017											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	94476865	94476865	+	Missense_Mutation	SNP	A	A	G	rs61750575		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ABCA4	NM_000350	exon39	c.T5537C	p.I1846T	AGGTCAATGAGGC	.	317	17	377	0	.	162	G	94476865	A	G	94476865	3	3	93	1	0	0	0	0	1	0	0	0	34	101	4	2	1332	2	ABCA4	1	94476865	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10	60730999	94476865	154773756	3	12018											
AMY2B	280	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	104120169	104120169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	AMY2B	NM_020978	exon10	c.A1159G	p.I387V	GTTACTATTAATC	.	386	137	515	2	.	90	G	104120169	A	G	104120169	3	3	93	1	0	0	0	0	1	0	0	0	595	449	16	2	1189	2	AMY2B	1	104120169	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10	9643304	104120169	145130452	4	12019											
SCAMP3	10067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155226183	155226183	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SCAMP3	NM_005698	exon9	c.G925C	p.A309P	AGCTGGCACCTGT	.	80	20	84	0	.	93	G	155226183	C	G	155226183	3	3	93	1	0	0	0	0	1	0	0	0	13872	710	25	4	122	4	SCAMP3	1	155226183	Missense_Mutation	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10	51106014	155226183	94024438	5	12020											
TMEM63A	9725	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226047035	226047035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TMEM63A	NM_014698	exon15	c.T1238C	p.I413T	CCCTGGATAGAGA	.	187	32	275	1	.	91	G	226047035	A	G	226047035	3	3	93	1	0	0	0	0	1	0	0	0	16187	333	12	2	1225	2	TMEM63A	1	226047035	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10	70820852	226047035	23203586	6	12021											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237947912	237947912	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	RYR2	NM_001035	exon90	c.C12900T	p.S4300S	GGCCAGCGTTTTC	.	63	16	89	0	.	158	T	237947912	C	T	237947912	2	4	93	1	0	0	0	0	0	0	0	1	13769	767	27	1		1	RYR2	1	237947912	Silent	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10	11900877	237947912	11302709	7	12022											
IL1R1	3554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102792895	102792895	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	IL1R1	NM_000877	exon11	c.C1386G	p.S462R	CTTCAGCTGGCTG	.	97	28	123	0	.	523	G	102792895	C	G	102792895	3	3	93	1	0	0	0	0	1	0	0	0	7658	796	28	4	1424	4	IL1R1	2	102792895	Missense_Mutation	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10		102792895	140406478	8	12023											
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	241697828	241697828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KIF1A	NM_001244008	exon26	c.C2531A	p.T844N	CCGCCGGTCACCA	.	206	15	262	0	.	91	T	241697828	G	T	241697828	3	4	93	1	0	0	0	0	1	0	0	0	8283	1261	44	3	2660	3	KIF1A	2	241697828	Missense_Mutation	SNP	G	TCGA-DD-A4NL-01A-11D-A28X-10	138904933	241697828	1501545	9	12024											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	66	19	81	0	.	24361	T	41268766	A	T	41268766	3	4	93	1	0	0	0	0	1	0	0	0	4016	14	1	4	1026	4	CTNNB1	3	41268766	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		41268766	156753664	10	12025											
CHST2	9435	broad.mit.edu;bcgsc.ca	37	3	142840928	142840928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CHST2	NM_004267	exon2	c.C1270T	p.R424W	GTGGTGCGGTACG	.	148	10	145	1	.	93	T	142840928	C	T	142840928	3	4	93	1	0	0	0	0	1	0	0	0	3404	759	27	1	1272	1	CHST2	3	142840928	Missense_Mutation	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10	101572162	142840928	55181502	11	12026											
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6083468	6083468	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	JAKMIP1	NM_001099433	exon6	c.A969G	p.R323R	GGTCTCTCGTGAG	.	68	5	94	0	.	292	C	6083468	T	C	6083468	2	2	93	1	0	0	0	0	0	0	0	1	7940	1538	54	2		2	JAKMIP1	4	6083468	Silent	SNP	T	TCGA-DD-A4NL-01A-11D-A28X-10		6083468	185070808	12	12027											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44176930	44176930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KCTD8	NM_198353	exon2	c.G1299A	p.K433K	ACTTAGCTTCTCA	.	53	6	57	0	.	92	T	44176930	C	T	44176930	2	4	93	1	0	0	0	0	0	0	0	1	8115	796	28	3		3	KCTD8	4	44176930	Silent	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10	38093462	44176930	146977346	13	12028											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32074424	32074424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PDZD2	NM_178140	exon17	c.G3212T	p.G1071V	GCCCTGGAAGCTG	.	55	14	66	0	.	563	T	32074424	G	T	32074424	3	4	93	1	0	0	0	0	1	0	0	0	11701	1174	41	3	3278	3	PDZD2	5	32074424	Missense_Mutation	SNP	G	TCGA-DD-A4NL-01A-11D-A28X-10		32074424	148840836	14	12029											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260056	55260067	+	In_Frame_Del	DEL	GACAAAATACAC	GACAAAATACAC	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	GACAAAATACAC	GACAAAATACAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	IL6ST	NM_175767	exon6	c.565_576del	p.189_192del	AATGTTGACAAAA	.	122	13	211	0	.	290	-	55260067	GACAAAATACAC	-	55260056	7	5	93	1	0	1	0	1	0	0	0	0	7703	1277	45	0	2228	0	IL6ST	5	55260056	In_Frame_Del	DEL	GACAAAATACAC	TCGA-DD-A4NL-01A-11D-A28X-10	23185632	55260056	125655204	15	12030											
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30624804	30624804	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	DHX16	NM_003587	exon13	c.T2073C	p.D691D	CCCTGGATCCAGC	.	111	37	135	1	.	228	G	30624804	A	G	30624804	2	3	93	1	0	0	0	0	0	0	0	1	4502	330	12	2		2	DHX16	6	30624804	Silent	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		30624804	140490263	16	12031											
EPHB4	2050	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	100402889	100402889	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	EPHB4	NM_004444	exon16	c.T2733A	p.S911S	GCCCACAGAGCCA	.	193	13	222	1	.	1446	T	100402889	A	T	100402889	2	4	93	1	0	0	0	0	0	0	0	1	5177	175	7	4		4	EPHB4	7	100402889	Silent	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		100402889	58735774	17	12032											
MLL3	58508	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151927100	151927100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MLL3	NM_170606	exon18	c.G2884T	p.V962F	CACAAACTACACA	.	1095	50	1363	0	.	1398	A	151927100	C	A	151927100	3	1	93	1	0	0	0	0	1	0	0	0	9622	565	20	3	12019	3	MLL3	7	151927100	Missense_Mutation	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10	51524211	151927100	7211563	18	12033											
HSD17B3	3293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	99007649	99007649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HSD17B3	NM_000197	exon8	c.A584G	p.Y195C	ATGGAGTAGAGAG	.	102	6	139	0	.	90	C	99007649	T	C	99007649	3	2	93	1	0	0	0	0	1	0	0	0	7385	1638	57	2	364	2	HSD17B3	9	99007649	Missense_Mutation	SNP	T	TCGA-DD-A4NL-01A-11D-A28X-10		99007649	42205782	19	12034											
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109687663	109687663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF462	NM_021224	exon3	c.G1470T	p.Q490H	CAAACAGTGTCAC	.	148	47	236	0	.	95	T	109687663	G	T	109687663	3	4	93	1	0	0	0	0	1	0	0	0	17923	1020	36	3	1476	3	ZNF462	9	109687663	Missense_Mutation	SNP	G	TCGA-DD-A4NL-01A-11D-A28X-10	10680014	109687663	31525768	20	12035											
RASSF10	644943	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	13032525	13032525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001080521	exon1	c.G1402A	p.V468M	ATGTGGGTGGACC	.	240	69	220	0	.	.	A	13032525	G	A	13032525	3	1	93	1	0	0	0	0	1	0	0	0	13085	1261	44	3	1732	3	RASSF10	11	13032525	Missense_Mutation	SNP	G	TCGA-DD-A4NL-01A-11D-A28X-10		13032525	121973991	21	12036											
TAS2R20	259295	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11150077	11150077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TAS2R20	NM_176889	exon1	c.T398C	p.V133A	CCCAACACTATCA	.	49	9	96	0	.	90	G	11150077	A	G	11150077	3	3	93	1	0	0	0	0	1	0	0	0	15568	159	6	2	535	2	TAS2R20	12	11150077	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		11150077	122701818	22	12037											
YEATS4	8089	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69753774	69753774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	YEATS4	NM_006530	exon1	c.T22C	p.F8L	GCCGAATTTGGGC	.	155	44	159	1	.	226	C	69753774	T	C	69753774	3	2	93	1	0	0	0	0	1	0	0	0	17470	1493	52	2	24	2	YEATS4	12	69753774	Missense_Mutation	SNP	T	TCGA-DD-A4NL-01A-11D-A28X-10	58603697	69753774	64098121	23	12038											
ADAM21	8747	broad.mit.edu;ucsc.edu	37	14	70924853	70924853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ADAM21	NM_003813	exon2	c.G637A	p.V213I	GAGCTAGTTGTTG	.	57	9	71	1	.	92	A	70924853	G	A	70924853	3	1	93	1	0	0	0	0	1	0	0	0	243	1029	36	3	639	3	ADAM21	14	70924853	Missense_Mutation	SNP	G	TCGA-DD-A4NL-01A-11D-A28X-10		70924853	36424687	24	12039											
SLC30A4	7782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45814342	45814342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SLC30A4	NM_013309	exon2	c.G211T	p.A71S	CGTCGGCCTGGAG	.	124	30	176	1	.	90	A	45814342	C	A	45814342	3	1	93	1	0	0	0	0	1	0	0	0	14557	739	26	3	1106	3	SLC30A4	15	45814342	Missense_Mutation	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10		45814342	56717050	25	12040											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54914613	54914613	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	UNC13C	NM_001080534	exon29	c.A6195G	p.V2065V	CACTGTAAAAGGT	.	70	15	85	0	.	51	G	54914613	A	G	54914613	2	3	93	1	0	0	0	0	0	0	0	1	16983	349	13	2		2	UNC13C	15	54914613	Silent	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10	9100271	54914613	47616779	26	12041											
ZNF267	10308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31896503	31896503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF267	NM_003414	exon3	c.A152T	p.D51V	AGCCGGACCTGAT	.	85	20	89	1	.	138	T	31896503	A	T	31896503	3	4	93	1	0	0	0	0	1	0	0	0	17803	275	10	4	162	4	ZNF267	16	31896503	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		31896503	58458250	27	12042											
FAM129C	199786	hgsc.bcm.edu;bcgsc.ca	37	19	17664297	17664297	+	Silent	SNP	A	A	G	rs199532721	alternate_allele	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FAM129C	NM_173544	exon16	c.A2019G	p.A673A	GCTTGCAGAGGGA	.	108	5	140	0	A|1.000;C|0.000	90	G	17664297	A	G	17664297	2	3	93	1	0	0	0	0	0	0	0	1	5438	175	7	2		2	FAM129C	19	17664297	Silent	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		17664297	41464686	28	12043											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu	37	19	59074590	59074612	+	Frame_Shift_Del	DEL	CCCCGCCCCCAGTGCTGGGGCGG	CCCCGCCCCCAGTGCTGGGGCGG	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	CCCCGCCCCCAGTGCTGGGGCGG	CCCCGCCCCCAGTGCTGGGGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MZF1	NM_198055	exon6	c.1032_1054del	p.344_352del	TAACCACCCCGCC	.	65	10	26	0	.	91	-	59074612	CCCCGCCCCCAGTGCTGGGGCGG	-	59074590	7	5	93	1	0	1	0	1	0	0	0	0	10108	507	18	0	1154	0	MZF1	19	59074590	Frame_Shift_Del	DEL	CCCCGCCCCCAGTGCTGGGGCGG	TCGA-DD-A4NL-01A-11D-A28X-10	41410293	59074590	54393	29	12044											
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	45242105	45242105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SLC13A3	NM_022829	exon2	c.C371G	p.P124R	CTGGCCGGCTGGA	.	126	26	138	0	.	91	C	45242105	G	C	45242105	3	2	93	1	0	0	0	0	1	0	0	0	14393	1116	39	4	1485	4	SLC13A3	20	45242105	Missense_Mutation	SNP	G	TCGA-DD-A4NL-01A-11D-A28X-10		45242105	17783415	30	12045											
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18604415	18604415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TUBA8	NM_018943	exon2	c.A173T	p.N58I	CTGGCAATGGGAA	.	212	56	248	0	.	90	T	18604415	A	T	18604415	3	4	93	1	0	0	0	0	1	0	0	0	16747	101	4	4	179	4	TUBA8	22	18604415	Missense_Mutation	SNP	A	TCGA-DD-A4NL-01A-11D-A28X-10		18604415	32700151	31	12046											
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22843497	22843497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF280B	NM_080764	exon4	c.A227T	p.D76V	AGGTGATCATACT	.	69	5	69	0	.	70	A	22843497	T	A	22843497	3	1	93	1	0	0	0	0	1	0	0	0	17812	1435	50	4	1408	4	ZNF280B	22	22843497	Missense_Mutation	SNP	T	TCGA-DD-A4NL-01A-11D-A28X-10	4239082	22843497	28461069	32	12047											
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44892793	44892793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	LDOC1L	NM_032287	exon2	c.G644T	p.G215V	CAAGGCCCCGTGC	.	47	14	53	0	.	69	A	44892793	C	A	44892793	3	1	93	1	0	0	0	0	1	0	0	0	8710	623	22	3	79	3	LDOC1L	22	44892793	Missense_Mutation	SNP	C	TCGA-DD-A4NL-01A-11D-A28X-10	22049296	44892793	6411773	33	12048											
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074333	8074340	+	Frame_Shift_Del	DEL	TCCTCTTC	TCCTCTTC	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TCCTCTTC	TCCTCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.319_326del	p.107_109del	ACTTGATCCTCTT	.	30	15	124	0	.	91	-	8074340	TCCTCTTC	-	8074333	7	5	94	1	0	1	0	1	0	0	0	0	5244	1435	50	0	1066	0	ERRFI1	1	8074333	Frame_Shift_Del	DEL	TCCTCTTC	TCGA-DD-A4NN-01A-11D-A28X-10		8074333	241176288	1	12049	63	2									
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074342	8074343	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.316_317del	p.106_106del	TCTTCATGTGGTC	.	26	15	119	0	.	91	-	8074343	TG	-	8074342	7	5	94	1	0	1	0	1	0	0	0	0	5244	1464	51	0	1075	0	ERRFI1	1	8074342	Frame_Shift_Del	DEL	TG	TCGA-DD-A4NN-01A-11D-A28X-10	9	8074342	241176279	2	12050	63	2									
HNRNPCL1	343069	ucsc.edu;bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	70	10	93	1	.	68	C	12907358	T	C	12907358	3	2	94	1	0	0	0	0	1	0	0	0	7263	1580	55	2	98	2	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	4833016	12907358	236343263	3	12051											
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	151110260	151110260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SEMA6C	NM_001178061	exon10	c.A683G	p.Q228R	AAGGCCTGGACAA	.	552	29	186	0	.	92	C	151110260	T	C	151110260	3	2	94	1	0	0	0	0	1	0	0	0	14041	1580	55	2	2249	2	SEMA6C	1	151110260	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	138202902	151110260	98140361	4	12052											
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153277442	153277442	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PGLYRP3	NM_052891	exon3	c.C357A	p.A119A	AAAGAAGGCGATG	.	590	113	198	0	.	94	T	153277442	G	T	153277442	2	4	94	1	0	0	0	0	0	0	0	1	11795	987	35	3		3	PGLYRP3	1	153277442	Silent	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	2167182	153277442	95973179	5	12053											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156828374	156828381	+	Frame_Shift_Del	DEL	GCAGGCAT	GCAGGCAT	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	GCAGGCAT	GCAGGCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	INSRR	NM_014215	exon1	c.33_40del	p.11_14del	TCACAGGCAGGCA	.	354	28	135	0	.	1403	-	156828381	GCAGGCAT	-	156828374	7	5	94	1	0	1	0	1	0	0	0	0	7774	1203	42	0	3940	0	INSRR	1	156828374	Frame_Shift_Del	DEL	GCAGGCAT	TCGA-DD-A4NN-01A-11D-A28X-10	3550932	156828374	92422247	6	12054											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158622406	158622406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SPTA1	NM_003126	exon23	c.C3226T	p.R1076C	GACGACGTCTGCG	.	300	106	127	0	.	142	A	158622406	G	A	158622406	3	1	94	1	0	0	0	0	1	0	0	0	15115	1145	40	1	4153	1	SPTA1	1	158622406	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	1794032	158622406	90628215	7	12055											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158624516	158624516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SPTA1	NM_003126	exon21	c.A2921G	p.E974G	ACTCCCTCCACTG	.	227	35	79	0	.	142	C	158624516	T	C	158624516	3	2	94	1	0	0	0	0	1	0	0	0	15115	1551	54	2	4466	2	SPTA1	1	158624516	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	2110	158624516	90626105	8	12056											
PVRL4	81607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161044015	161044015	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PVRL4	NM_030916	exon6	c.C1149T	p.T383T	TTTCTGGGTCATC	.	620	126	204	0	.	92	A	161044015	G	A	161044015	2	1	94	1	0	0	0	0	0	0	0	1	12842	1219	43	3		3	PVRL4	1	161044015	Silent	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	2419499	161044015	88206606	9	12057											
GPR52	9293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	174417683	174417683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GPR52	NM_005684	exon1	c.A434T	p.K145M	TAACCAAGCCTCT	.	410	157	135	0	.	91	T	174417683	A	T	174417683	3	4	94	1	0	0	0	0	1	0	0	0	6698	72	3	4	436	4	GPR52	1	174417683	Missense_Mutation	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10	13373668	174417683	74832938	10	12058											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181479711	181479711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CACNA1E	NM_001205293	exon2	c.G365A	p.R122Q	TGTCCCGAAGACT	.	418	69	167	0	.	95	A	181479711	G	A	181479711	3	1	94	1	0	0	0	0	1	0	0	0	2542	1058	37	1	371	1	CACNA1E	1	181479711	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	7062028	181479711	67770910	11	12059											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186086707	186086707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	HMCN1	NM_031935	exon77	c.G11800A	p.G3934S	AAAAATGGTATAA	.	307	101	104	0	.	113	A	186086707	G	A	186086707	3	1	94	1	0	0	0	0	1	0	0	0	7220	1348	47	3	12106	3	HMCN1	1	186086707	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	4606996	186086707	63163914	12	12060											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	223968572	223968572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TP53BP2	NM_001031685	exon18	c.C3388G	p.Q1130E	TCCTTTGTCTTGG	.	83	6	61	0	.	229	C	223968572	G	C	223968572	3	2	94	1	0	0	0	0	1	0	0	0	16381	1386	48	4	20	4	TP53BP2	1	223968572	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	37881865	223968572	25282049	13	12061											
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101580582	101580590	+	In_Frame_Del	DEL	GGAAAGGAG	GGAAAGGAG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	GGAAAGGAG	GGAAAGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	NPAS2	NM_002518	exon8	c.661_669del	p.221_223del	CCACTAGGAAAGG	.	94	24	88	0	.	94	-	101580590	GGAAAGGAG	-	101580582	7	5	94	1	0	1	0	1	0	0	0	0	10563	1001	35	0	687	0	NPAS2	2	101580582	In_Frame_Del	DEL	GGAAAGGAG	TCGA-DD-A4NN-01A-11D-A28X-10		101580582	141618791	14	12062											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196891544	196891544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DNAH7	NM_018897	exon7	c.A607G	p.I203V	TAACTATGCTGTC	.	129	67	108	0	.	102	C	196891544	T	C	196891544	3	2	94	1	0	0	0	0	1	0	0	0	4606	1464	51	2	11703	2	DNAH7	2	196891544	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	95310962	196891544	46307829	15	12063											
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237032725	237032725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGAP1	NM_001037131	exon18	c.A2533G	p.N845D	AACAATAACCGGA	.	382	174	293	0	.	93	G	237032725	A	G	237032725	3	3	94	1	0	0	0	0	1	0	0	0	366	362	13	2	2603	2	AGAP1	2	237032725	Missense_Mutation	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10	40141181	237032725	6166648	16	12064											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	79174651	79174651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ROBO1	NM_002941	exon3	c.C127T	p.P43S	GGATTGGCGTCCC	.	334	149	269	0	.	67	A	79174651	G	A	79174651	3	1	94	1	0	0	0	0	1	0	0	0	13513	1203	42	3	5016	3	ROBO1	3	79174651	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10		79174651	118847779	17	12065											
AGPAT9	84803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	84457903	84457903	+	Missense_Mutation	SNP	T	T	A	rs150911365	alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGPAT9	NM_001256421	exon2	c.T128A	p.V43E	TCCTAGTGAAAAC	.	36	28	47	0	T|1.000;C|0.000	91	A	84457903	T	A	84457903	3	1	94	1	0	0	0	0	1	0	0	0	392	1696	59	4	130	4	AGPAT9	4	84457903	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		84457903	106696373	18	12066											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85724505	85724505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WDFY3	NM_014991	exon16	c.C2545T	p.P849S	CTCCAGGATGAAT	.	233	170	345	0	.	93	A	85724505	G	A	85724505	3	1	94	1	0	0	0	0	1	0	0	0	17267	1174	41	3	8247	3	WDFY3	4	85724505	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	1266602	85724505	105429771	19	12067											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177058704	177058704	+	Missense_Mutation	SNP	G	G	A	rs200199041		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WDR17	NM_170710	exon10	c.G1373A	p.R458Q	CTTCCCGAAATGG	.	32	26	61	0	.	95	A	177058704	G	A	177058704	3	1	94	1	0	0	0	0	1	0	0	0	17274	1058	37	1	1407	1	WDR17	4	177058704	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	91334199	177058704	14095572	20	12068											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	7706898	7706910	+	Frame_Shift_Del	DEL	TGGGCGTGCATTC	TGGGCGTGCATTC	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TGGGCGTGCATTC	TGGGCGTGCATTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADCY2	NM_020546	exon8	c.1151_1163del	p.384_388del	TGCGCGTGGGCGT	.	264	59	228	0	.	97	-	7706910	TGGGCGTGCATTC	-	7706898	7	5	94	1	0	1	0	1	0	0	0	0	294	1696	59	0	1181	0	ADCY2	5	7706898	Frame_Shift_Del	DEL	TGGGCGTGCATTC	TCGA-DD-A4NN-01A-11D-A28X-10		7706898	173208362	21	12069											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10391780	10391780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MARCH6	NM_005885	exon7	c.G703C	p.D235H	GAGGAGGACAATG	.	246	55	168	0	.	501	C	10391780	G	C	10391780	3	2	94	1	0	0	0	0	1	0	0	0	9305	1174	41	4	729	4	MARCH6	5	10391780	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	2684882	10391780	170523480	22	12070											
SV2C	22987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75427868	75427868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SV2C	NM_014979	exon2	c.G293T	p.S98I	TCCCCAGTATGAA	.	192	80	151	0	.	91	T	75427868	G	T	75427868	3	4	94	1	0	0	0	0	1	0	0	0	15416	1029	36	3	295	3	SV2C	5	75427868	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	65036088	75427868	105487392	23	12071											
CXXC5	51523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139060853	139060853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CXXC5	NM_016463	exon2	c.C745G	p.L249V	GGAGAGCTGGCCT	.	115	8	99	0	.	90	G	139060853	C	G	139060853	3	3	94	1	0	0	0	0	1	0	0	0	4099	796	28	4	747	4	CXXC5	5	139060853	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	63632985	139060853	41854407	24	12072											
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176940709	176940709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DDX41	NM_016222	exon10	c.C1075A	p.R359S	TGGTACGGATGTC	.	212	105	183	0	.	226	T	176940709	G	T	176940709	3	4	94	1	0	0	0	0	1	0	0	0	4361	1116	39	1	825	1	DDX41	5	176940709	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	37879856	176940709	3974551	25	12073											
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29408254	29408254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	OR10C1	NM_013941	exon1	c.462delG	p.V154fs	GCTGGTGGGGCTG	.	172	52	98	0	.	22	-	29408254	G	-	29408254	7	5	94	1	0	1	0	1	0	0	0	0	10898	1335	47	0	464	0	OR10C1	6	29408254	Frame_Shift_Del	DEL	G	TCGA-DD-A4NN-01A-11D-A28X-10		29408254	141706813	26	12074											
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu	37	6	136589436	136589436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BCLAF1	NM_014739	exon10	c.C2261T	p.S754F	GCTGAAGAGGATG	.	94	11	106	0	.	228	A	136589436	G	A	136589436	3	1	94	1	0	0	0	0	1	0	0	0	1383	942	33	3	517	3	BCLAF1	6	136589436	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	107181182	136589436	34525631	27	12075											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11633070	11633070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	THSD7A	NM_015204	exon3	c.G1082A	p.C361Y	ACCTGGCACTCTT	.	136	61	128	0	.	71	T	11633070	C	T	11633070	3	4	94	1	0	0	0	0	1	0	0	0	15876	710	25	3	3991	3	THSD7A	7	11633070	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10		11633070	147505593	28	12076											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47876604	47876604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PKD1L1	NM_138295	exon37	c.A5858G	p.H1953R	GGCGTGTGCAGGT	.	373	84	291	0	.	145	C	47876604	T	C	47876604	3	2	94	1	0	0	0	0	1	0	0	0	11964	1696	59	2	2775	2	PKD1L1	7	47876604	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	36243534	47876604	111262059	29	12077											
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	53103948	53103948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_182595	exon1	c.C584G	p.P195R	ACGGGCCGTTGTG	.	71	33	43	0	.	.	G	53103948	C	G	53103948	3	3	94	1	0	0	0	0	1	0	0	0	12241	652	23	4	586	4	POM121L12	7	53103948	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	5227344	53103948	106034715	30	12078											
MLXIPL	51085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73020062	73020062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MLXIPL	NM_032954	exon7	c.T857G	p.L286R	GGCGTCAGGTCCG	.	175	84	134	1	.	91	C	73020062	A	C	73020062	3	2	94	1	0	0	0	0	1	0	0	0	9637	188	7	5	1745	5	MLXIPL	7	73020062	Missense_Mutation	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10	19916114	73020062	86118601	31	12079											
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	139876582	139876582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	JHDM1D	NM_030647	exon1	c.G156C	p.M52I	CTCGATCATGAAG	.	75	29	49	0	.	91	G	139876582	C	G	139876582	3	3	94	1	0	0	0	0	1	0	0	0	7948	826	29	4	2749	4	JHDM1D	7	139876582	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	66856520	139876582	19262081	32	12080											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2054129	2054129	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MYOM2	NM_003970	exon22	c.T2832C	p.C944C	CTGGTGTAAATCC	.	172	105	128	0	.	95	C	2054129	T	C	2054129	2	2	94	1	0	0	0	0	0	0	0	1	10092	1644	57	2		2	MYOM2	8	2054129	Silent	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		2054129	144309893	33	12081											
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16850701	16850701	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FGF20	NM_019851	exon3	c.C516T	p.D172D	AGTTCCGTCTTTG	.	151	51	114	0	.	522	A	16850701	G	A	16850701	2	1	94	1	0	0	0	0	0	0	0	1	5849	1136	40	1		1	FGF20	8	16850701	Silent	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	14796572	16850701	129513321	34	12082											
BAG4	9530	ucsc.edu;bcgsc.ca	37	8	38050279	38050279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BAG4	NM_004874	exon2	c.G344T	p.S115I	ACCCAAGTACATA	.	43	4	67	0	.	228	T	38050279	G	T	38050279	3	4	94	1	0	0	0	0	1	0	0	0	1289	1029	36	3	350	3	BAG4	8	38050279	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	21199578	38050279	108313743	35	12083											
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48309166	48309166	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	KIAA0146	NM_001080394	exon6	c.A756T	p.S252S	AAATTCAGCAAAG	.	92	38	100	0	.	68	T	48309166	A	T	48309166	2	4	94	1	0	0	0	0	0	0	0	1	8157	175	7	4		4	KIAA0146	8	48309166	Silent	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10	10258887	48309166	98054856	36	12084											
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145741755	145741755	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	RECQL4	NM_004260	exon5	c.G748C	p.G250R	GGCTCCCCACACG	.	41	13	22	0	.	1083	G	145741755	C	G	145741755	3	3	94	1	0	0	0	0	1	0	0	0	13202	623	22	4	2947	4	RECQL4	8	145741755	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	97432589	145741755	622267	37	12085											
DOCK8	81704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	429834	429834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DOCK8	NM_203447	exon36	c.T4606C	p.F1536L	ATGAGGTTCAGTT	.	139	45	118	1	.	517	C	429834	T	C	429834	3	2	94	1	0	0	0	0	1	0	0	0	4693	1725	60	2	4748	2	DOCK8	9	429834	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		429834	140783597	38	12086											
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130941315	130941315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CIZ1	NM_001257975	exon8	c.G1261A	p.V421M	GCTGCACCTGCCT	.	174	81	110	0	.	92	T	130941315	C	T	130941315	3	4	94	1	0	0	0	0	1	0	0	0	3441	507	18	3	1565	3	CIZ1	9	130941315	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	130511481	130941315	10272116	39	12087											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20083871	20083871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	NAV2	NM_001244963	exon22	c.C5018T	p.S1673F	CACTCTCCTTGGT	.	41	22	22	0	.	96	T	20083871	C	T	20083871	3	4	94	1	0	0	0	0	1	0	0	0	10184	855	30	3	5037	3	NAV2	11	20083871	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10		20083871	114922645	40	12088											
GAS2	2620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22777439	22777439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GAS2	NM_177553	exon7	c.C663G	p.F221L	CAAGTTCTGTGTG	.	137	38	95	0	.	652	G	22777439	C	G	22777439	3	3	94	1	0	0	0	0	1	0	0	0	6245	912	32	4	685	4	GAS2	11	22777439	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	2693568	22777439	112229077	41	12089											
AGAP2	116986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58125709	58125709	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGAP2	NM_001122772	exon8	c.C1836T	p.L612L	GGACGGGAGGGAA	.	109	50	81	0	.	716	A	58125709	G	A	58125709	2	1	94	1	0	0	0	0	0	0	0	1	368	1161	41	3		3	AGAP2	12	58125709	Silent	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10		58125709	75726186	42	12090											
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78474006	78474006	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	EDNRB	NM_001201397	exon7	c.A1452G	p.K484K	GCAGTTTTTGAAT	.	20	16	34	0	.	522	C	78474006	T	C	78474006	2	2	94	1	0	0	0	0	0	0	0	1	4920	1838	64	2		2	EDNRB	13	78474006	Silent	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		78474006	36695872	43	12091											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	54914531	54914531	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	UNC13C	NM_001080534	exon29	c.6113delC	p.S2038fs	GTCGTTCCTCCAA	.	110	43	92	0	.	51	-	54914531	C	-	54914531	7	5	94	1	0	1	0	1	0	0	0	0	16983	855	30	0	6227	0	UNC13C	15	54914531	Frame_Shift_Del	DEL	C	TCGA-DD-A4NN-01A-11D-A28X-10		54914531	47616861	44	12092											
ITGAL	3683	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30525112	30525112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ITGAL	NM_002209	exon25	c.A2807G	p.Y936C	CACTCTATGTCAG	.	123	68	117	2	.	994	G	30525112	A	G	30525112	3	3	94	1	0	0	0	0	1	0	0	0	7886	449	16	2	2905	2	ITGAL	16	30525112	Missense_Mutation	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10		30525112	59829641	45	12093											
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31282347	31282347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ITGAM	NM_000632	exon6	c.G500A	p.R167Q	ACTTTCGGCGGAT	.	203	63	151	0	.	226	A	31282347	G	A	31282347	3	1	94	1	0	0	0	0	1	0	0	0	7887	1116	39	1	522	1	ITGAM	16	31282347	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	757235	31282347	59072406	46	12094											
BBS2	583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56548459	56548459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BBS2	NM_031885	exon2	c.A251T	p.N84I	TCAGGGTTCAATA	.	140	109	256	0	.	91	A	56548459	T	A	56548459	3	1	94	1	0	0	0	0	1	0	0	0	1338	1725	60	4	1978	4	BBS2	16	56548459	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	25266112	56548459	33806294	47	12095											
MYH8	4626	ucsc.edu;bcgsc.ca	37	17	10315757	10315757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MYH8	NM_002472	exon14	c.A1346T	p.Q449L	TCCAGCTGCTGGT	.	457	184	395	2	.	101	A	10315757	T	A	10315757	3	1	94	1	0	0	0	0	1	0	0	0	10041	1580	55	4	4575	4	MYH8	17	10315757	Missense_Mutation	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		10315757	70879453	48	12096											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	34340646	34340647	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FHOD3	NM_025135	exon23	c.3976_3977insGT	p.E1326fs	GCGGCTGAGCACG	.	156	88	85	0	.	139	GT	34340647	-	GT	34340646	7	5	94	1	0	1	1	0	0	0	0	0	5883	1291	45	0	4066	0	FHOD3	18	34340646	Frame_Shift_Ins	INS	-	TCGA-DD-A4NN-01A-11D-A28X-10		34340646	43736602	49	12097											
CDH19	28513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	64239420	64239420	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CDH19	NM_021153	exon2	c.C22G	p.R8G	TAAAACGCAGCAG	.	142	76	103	0	.	516	C	64239420	G	C	64239420	3	2	94	1	0	0	0	0	1	0	0	0	3104	1087	38	4	2340	4	CDH19	18	64239420	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	29898774	64239420	13837828	50	12098											
APC2	10297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1456316	1456316	+	Silent	SNP	G	G	A	rs138830892	alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	APC2	NM_005883	exon8	c.G729A	p.A243A	GCTGGCGGTGAAG	.	201	68	159	0	G|1.000;C|0.000	290	A	1456316	G	A	1456316	2	1	94	1	0	0	0	0	0	0	0	1	764	1103	39	1		1	APC2	19	1456316	Silent	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10		1456316	57672667	51	12099											
ZNF443	10224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12542333	12542333	+	Missense_Mutation	SNP	G	G	A	rs143162114	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF443	NM_005815	exon4	c.C653T	p.T218M	GTGTGCGTTCTTT	.	308	19	201	0	G|0.999;A|0.001	91	A	12542333	G	A	12542333	3	1	94	1	0	0	0	0	1	0	0	0	17913	1145	40	1	1366	1	ZNF443	19	12542333	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	11086017	12542333	46586650	52	12100											
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	15349580	15349580	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BRD4	NM_058243	exon19	c.G3994T	p.E1332X	CCTGCTCCCGCTT	.	135	66	62	0	.	767	A	15349580	C	A	15349580	4	1	94	1	0	0	0	0	0	1	0	0	1504	864	30	3	102	3	BRD4	19	15349580	Nonsense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	2807247	15349580	43779403	53	12101											
CHERP	10523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	16636060	16636060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CHERP	NM_006387	exon10	c.C1734G	p.F578L	GGCAGGGAAGTCC	.	187	67	98	0	.	92	C	16636060	G	C	16636060	3	2	94	1	0	0	0	0	1	0	0	0	3336	1165	41	4	1048	4	CHERP	19	16636060	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	1286480	16636060	42492923	54	12102											
ZNF431	170959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21366647	21366647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF431	NM_133473	exon5	c.G1541A	p.C514Y	ACAAATGTGAAGA	.	78	26	37	0	.	514	A	21366647	G	A	21366647	3	1	94	1	0	0	0	0	1	0	0	0	17902	1377	48	3	1559	3	ZNF431	19	21366647	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	4730587	21366647	37762336	55	12103											
ZNF461	92283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37130125	37130125	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_153257	exon6	c.A1122T	p.I374I	CTGATGTATAGTA	.	90	38	81	0	.	.	A	37130125	T	A	37130125	2	1	94	1	0	0	0	0	0	0	0	1	17922	1628	57	4		4	ZNF461	19	37130125	Silent	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	15763478	37130125	21998858	56	12104											
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37642633	37642633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF585A	NM_199126	exon6	c.G2003T	p.C668F	TTCCCACACTCAG	.	358	130	226	0	.	92	A	37642633	C	A	37642633	3	1	94	1	0	0	0	0	1	0	0	0	18014	478	17	3	145	3	ZNF585A	19	37642633	Missense_Mutation	SNP	C	TCGA-DD-A4NN-01A-11D-A28X-10	512508	37642633	21486350	57	12105											
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54696036	54696036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TSEN34	NM_024075	exon4	c.A557G	p.Q186R	TTGTCCAGCTGGC	.	259	126	206	1	.	90	G	54696036	A	G	54696036	3	3	94	1	0	0	0	0	1	0	0	0	16610	188	7	2	567	2	TSEN34	19	54696036	Missense_Mutation	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10	17053403	54696036	4432947	58	12106											
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30309743	30309743	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BCL2L1	NM_138578	exon2	c.A279T	p.A93A	GTCGCCTGCCTCC	.	279	83	141	0	.	1084	A	30309743	T	A	30309743	2	1	94	1	0	0	0	0	0	0	0	1	1367	1567	55	4		4	BCL2L1	20	30309743	Silent	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		30309743	32715777	59	12107											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49508566	49508566	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADNP	NM_015339	exon5	c.T2685G	p.P895P	AAAAACAGGGTCA	.	161	84	112	0	.	92	C	49508566	A	C	49508566	2	2	94	1	0	0	0	0	0	0	0	1	323	175	7	5		5	ADNP	20	49508566	Silent	SNP	A	TCGA-DD-A4NN-01A-11D-A28X-10	19198823	49508566	13516954	60	12108											
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28210546	28210546	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADAMTS1	NM_006988	exon9	c.A2256G	p.E752E	TTTCACTTCGATG	.	83	35	69	0	.	272	C	28210546	T	C	28210546	2	2	94	1	0	0	0	0	0	0	0	1	255	1606	56	2		2	ADAMTS1	21	28210546	Silent	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10		28210546	19919349	61	12109											
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34721747	34721747	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	IFNAR1	NM_000629	exon8	c.T1041C	p.H347H	ATTCCATATCTAT	.	101	45	106	0	.	91	C	34721747	T	C	34721747	2	2	94	1	0	0	0	0	0	0	0	1	7544	1403	49	2		2	IFNAR1	21	34721747	Silent	SNP	T	TCGA-DD-A4NN-01A-11D-A28X-10	6511201	34721747	13408148	62	12110											
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31747756	31747756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DMD	NM_004006	exon52	c.C7652T	p.T2551M	CGATCCGTAATGA	.	202	69	207	1	.	265	A	31747756	G	A	31747756	3	1	94	1	0	0	0	0	1	0	0	0	4580	1145	40	1	3665	1	DMD	23	31747756	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10		31747756	123522804	63	12111											
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75649900	75649900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MAGEE1	NM_020932	exon1	c.G1577A	p.R526H	AATATCGCAACCA	.	105	30	118	0	.	262	A	75649900	G	A	75649900	3	1	94	1	0	0	0	0	1	0	0	0	9185	1087	38	1	1579	1	MAGEE1	23	75649900	Missense_Mutation	SNP	G	TCGA-DD-A4NN-01A-11D-A28X-10	43902144	75649900	79620660	64	12112											
SESN2	83667	broad.mit.edu;ucsc.edu	37	1	28598953	28598953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SESN2	NM_031459	exon4	c.G513T	p.W171C	GCCATGGCTCATC	.	43	4	48	0	.	230	T	28598953	G	T	28598953	3	4	95	1	0	0	0	0	1	0	0	0	14125	1212	42	3	527	3	SESN2	1	28598953	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		28598953	220651668	1	12113											
GDAP2	54834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	118455267	118455268	+	Missense_Mutation	DNP	TG	TG	AT	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	.	.	.	p.FN118LY	CTAGATTGAATCC	.	129	63	97	0	.	.	AT	118455268	TG	AT	118455267	3	1	95	1	0	0	0	0	1	0	0	0	6309	1812	63	4	1227	4	GDAP2	1	118455267	Missense_Mutation	DNP	TG	TCGA-DD-A4NO-01A-11D-A28X-10	89856314	118455267	130795354	2	12114											
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158747387	158747387	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	OR6N2	NM_001005278	exon1	c.G39T	p.V13V	AAGGAACACAAAT	.	468	134	292	0	.	68	A	158747387	C	A	158747387	2	1	95	1	0	0	0	0	0	0	0	1	11207	465	17	3		3	OR6N2	1	158747387	Silent	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	40292120	158747387	90503234	3	12115											
ATP2B4	493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	203702358	203702358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ATP2B4	NM_001001396	exon21	c.T3317C	p.V1106A	TCGACGTAATTAA	.	140	23	70	0	.	517	C	203702358	T	C	203702358	3	2	95	1	0	0	0	0	1	0	0	0	1142	1638	57	2	3395	2	ATP2B4	1	203702358	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	44954971	203702358	45548263	4	12116											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211486854	211486854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	RCOR3	NM_001136223	exon12	c.T1406A	p.L469Q	CCACTCTGAACCA	.	203	68	97	0	.	91	A	211486854	T	A	211486854	3	1	95	1	0	0	0	0	1	0	0	0	13184	1580	55	4	1485	4	RCOR3	1	211486854	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	7784496	211486854	37763767	5	12117											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	73681090	73681090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ALMS1	NM_015120	exon8	c.T7433A	p.L2478Q	ATTCACTGGCTGC	.	195	10	125	0	.	142	A	73681090	T	A	73681090	3	1	95	1	0	0	0	0	1	0	0	0	535	1580	55	4	7463	4	ALMS1	2	73681090	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10		73681090	169518283	6	12118											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098809	178098809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	NFE2L2	NM_006164	exon2	c.A236T	p.E79V	CCTGTCTCTTCAT	.	64	26	47	0	.	90	A	178098809	T	A	178098809	3	1	95	1	0	0	0	0	1	0	0	0	10368	1551	54	4	1597	4	NFE2L2	2	178098809	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	104417719	178098809	65100564	7	12119	64	2									
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	178098810	178098810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	NFE2L2	NM_006164	exon2	c.G235T	p.E79X	CTGTCTCTTCATC	.	64	27	48	0	.	90	A	178098810	C	A	178098810	4	1	95	1	0	0	0	0	0	1	0	0	10368	922	32	3	1598	3	NFE2L2	2	178098810	Nonsense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	1	178098810	65100563	8	12120	64	2									
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209217426	209217426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PIKFYVE	NM_015040	exon39	c.5764delA	p.K1922fs	GGTTATAAGAACT	.	44	16	46	0	.	583	-	209217426	A	-	209217426	7	5	95	1	0	1	0	1	0	0	0	0	11924	363	13	0	5925	0	PIKFYVE	2	209217426	Frame_Shift_Del	DEL	A	TCGA-DD-A4NO-01A-11D-A28X-10	31118616	209217426	33981947	9	12121											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220342149	220342149	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SPEG	NM_005876	exon20	c.G4711T	p.E1571X	AAAGCAGAGTTGG	.	120	50	105	0	.	383	T	220342149	G	T	220342149	4	4	95	1	0	0	0	0	0	1	0	0	15035	943	33	3	4801	3	SPEG	2	220342149	Nonsense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	11124723	220342149	22857224	10	12122											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	225653873	225653873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	DOCK10	NM_014689	exon48	c.G5326T	p.G1776X	GCCATCCCATAGA	.	110	54	86	0	.	92	A	225653873	C	A	225653873	4	1	95	1	0	0	0	0	0	1	0	0	4685	632	22	3	1270	3	DOCK10	2	225653873	Nonsense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	5311724	225653873	17545500	11	12123											
PDE12	201626	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57542702	57542702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PDE12	NM_177966	exon1	c.A596C	p.K199T	GGTATAAGGAAGC	.	111	39	106	1	.	22	C	57542702	A	C	57542702	3	2	95	1	0	0	0	0	1	0	0	0	11632	72	3	5	598	5	PDE12	3	57542702	Missense_Mutation	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		57542702	140479728	12	12124											
LRIG1	26018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	66465346	66465346	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LRIG1	NM_015541	exon5	c.A645G	p.Q215Q	TCACAGTTGTGTC	.	114	32	73	0	.	230	C	66465346	T	C	66465346	2	2	95	1	0	0	0	0	0	0	0	1	8944	1722	60	2		2	LRIG1	3	66465346	Silent	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	8922644	66465346	131557084	13	12125											
ZNF654	55279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	88189316	88189316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ZNF654	NM_018293	exon1	c.G856A	p.A286T	CAGCTTGCCCAGC	.	70	19	74	0	.	69	A	88189316	G	A	88189316	3	1	95	1	0	0	0	0	1	0	0	0	18064	1319	46	3	858	3	ZNF654	3	88189316	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	21723970	88189316	109833114	14	12126											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108373044	108373044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	DZIP3	NM_014648	exon19	c.C2086T	p.H696Y	AATCCACACTCAG	.	149	43	143	0	.	91	T	108373044	C	T	108373044	3	4	95	1	0	0	0	0	1	0	0	0	4865	478	17	3	2156	3	DZIP3	3	108373044	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	20183728	108373044	89649386	15	12127											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3123007	3123007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	HTT	NM_002111	exon9	c.C1121A	p.T374N	TTGTGACCGGAGC	.	115	45	85	0	.	281	A	3123007	C	A	3123007	3	1	95	1	0	0	0	0	1	0	0	0	7457	507	18	3	1155	3	HTT	4	3123007	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10		3123007	188031269	16	12128											
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70352328	70352330	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	UGT2B4	NM_021139	exon4	c.1087_1089del	p.363_363del	CTTACCAAGAAGA	.	84	22	100	0	.	92	-	70352330	AAG	-	70352328	7	5	95	1	0	1	0	1	0	0	0	0	16958	144	5	0	509	0	UGT2B4	4	70352328	In_Frame_Del	DEL	AAG	TCGA-DD-A4NO-01A-11D-A28X-10	67229321	70352328	120801948	17	12129											
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146695657	146695657	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ZNF827	NM_178835	exon12	c.2860+1G>C	.	TGGTCACCTGTGT	.	148	42	132	0	.	22	G	146695657	C	G	146695657	5	3	95	1	0	0	0	0	0	0	1	0	18177	521	18	4	384	4	ZNF827	4	146695657	Splice_Site	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	76343329	146695657	44458619	18	12130											
KIAA0947	23379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5461240	5461240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	KIAA0947	NM_015325	exon13	c.A1793G	p.D598G	AAGAAGATACTCA	.	101	28	81	1	.	48	G	5461240	A	G	5461240	3	3	95	1	0	0	0	0	1	0	0	0	8202	333	12	2	1843	2	KIAA0947	5	5461240	Missense_Mutation	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		5461240	175454020	19	12131											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26881251	26881251	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CDH9	NM_016279	exon12	c.A2364C	p.R788R	TTAGTCTCGGTCA	.	152	56	89	0	.	99	G	26881251	T	G	26881251	2	3	95	1	0	0	0	0	0	0	0	1	3117	1538	54	5		5	CDH9	5	26881251	Silent	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	21420011	26881251	154034009	20	12132											
GZMA	3001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54401400	54401400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	GZMA	NM_006144	exon2	c.G169A	p.A57T	GCTGGGGCTTTGA	.	45	21	51	0	.	94	A	54401400	G	A	54401400	3	1	95	1	0	0	0	0	1	0	0	0	6915	1203	42	3	175	3	GZMA	5	54401400	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	27520149	54401400	126513860	21	12133											
ERBB2IP	55914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	65349290	65349290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ERBB2IP	NM_001253699	exon21	c.C2144T	p.S715L	ACAGTTCAACAGA	.	104	36	96	1	.	653	T	65349290	C	T	65349290	3	4	95	1	0	0	0	0	1	0	0	0	5207	838	29	3	2218	3	ERBB2IP	5	65349290	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	10947890	65349290	115565970	22	12134											
NR3C1	2908	hgsc.bcm.edu;bcgsc.ca	37	5	142779486	142779486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	NR3C1	NM_001018074	exon2	c.C919G	p.P307A	CTCCAGGAAAGCT	.	87	4	72	0	.	92	C	142779486	G	C	142779486	3	2	95	1	0	0	0	0	1	0	0	0	10630	1174	41	4	1501	4	NR3C1	5	142779486	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	77430196	142779486	38135774	23	12135											
FLT4	2324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180048556	180048556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	FLT4	NM_182925	exon13	c.A2006G	p.Y669C	GACAGGTACTTCT	.	180	61	105	1	.	1490	C	180048556	T	C	180048556	3	2	95	1	0	0	0	0	1	0	0	0	5944	1638	57	2	2165	2	FLT4	5	180048556	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	37269070	180048556	866704	24	12136											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522055	157522055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ARID1B	NM_020732	exon18	c.A4327G	p.I1443V	CACGGAATCCCGC	.	216	90	179	0	.	154	G	157522055	A	G	157522055	3	3	95	1	0	0	0	0	1	0	0	0	914	101	4	2	4397	2	ARID1B	6	157522055	Missense_Mutation	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		157522055	13593012	25	12137											
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161016508	161016508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LPA	NM_005577	exon22	c.C3347A	p.T1116N	TCCATGGTGTAAC	.	143	29	84	0	.	74	T	161016508	G	T	161016508	3	4	95	1	0	0	0	0	1	0	0	0	8903	1261	44	3	2851	3	LPA	6	161016508	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	3494453	161016508	10098559	26	12138											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11446000	11446000	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	THSD7A	NM_015204	exon21	c.T4164C	p.C1388C	GTCAGCACAGAAT	.	155	56	71	0	.	71	G	11446000	A	G	11446000	2	3	95	1	0	0	0	0	0	0	0	1	15876	157	6	2		2	THSD7A	7	11446000	Silent	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		11446000	147692663	27	12139											
HIPK2	28996	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139416619	139416619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	HIPK2	NM_022740	exon2	c.C215T	p.P72L	GGGACCGGCAAGG	.	394	86	262	1	.	785	A	139416619	G	A	139416619	3	1	95	1	0	0	0	0	1	0	0	0	7117	1116	39	1	3437	1	HIPK2	7	139416619	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	127970619	139416619	19722044	28	12140											
GSR	2936	hgsc.bcm.edu;bcgsc.ca	37	8	30538494	30538494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	GSR	NM_000637	exon12	c.C1346A	p.P449Q	TACATCGGGGTAA	.	82	4	81	0	.	94	T	30538494	G	T	30538494	3	4	95	1	0	0	0	0	1	0	0	0	6828	1116	39	1	230	1	GSR	8	30538494	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		30538494	115825528	29	12141											
PDE7A	5150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	66635839	66635840	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PDE7A	NM_001242318	exon12	c.1180_1181insA	p.Y394fs	AATGATATTTTTT	.	69	29	43	0	.	90	T	66635840	-	T	66635839	7	5	95	1	0	1	1	0	0	0	0	0	11651	449	16	0	308	0	PDE7A	8	66635839	Frame_Shift_Ins	INS	-	TCGA-DD-A4NO-01A-11D-A28X-10	36097345	66635839	79728183	30	12142											
ESRP1	54845	broad.mit.edu;bcgsc.ca	37	8	95680361	95680361	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ESRP1	NM_001122827	exon10	c.C1116T	p.D372D	AGGGGACGCTTTT	.	227	132	95	2	.	94	T	95680361	C	T	95680361	2	4	95	1	0	0	0	0	0	0	0	1	5258	535	19	1		1	ESRP1	8	95680361	Silent	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	29044522	95680361	50683661	31	12143											
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145106719	145106719	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	OPLAH	NM_017570	exon27	c.C3631G	p.P1211A	CGCCAGGCTCGCC	.	47	15	29	0	.	68	C	145106719	G	C	145106719	3	2	95	1	0	0	0	0	1	0	0	0	10876	1203	42	4	243	4	OPLAH	8	145106719	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	49426358	145106719	1257303	32	12144											
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102265220	102265221	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SEC31B	NM_015490	exon10	c.1077_1078insT	p.L359fs	TGGTGGGAGAGGC	.	95	23	55	0	.	91	A	102265221	-	A	102265220	7	5	95	1	0	1	1	0	0	0	0	0	13999	1161	41	0	2530	0	SEC31B	10	102265220	Frame_Shift_Ins	INS	-	TCGA-DD-A4NO-01A-11D-A28X-10		102265220	33269527	33	12145											
ABTB2	25841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34189528	34189528	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ABTB2	NM_145804	exon6	c.A1575C	p.P525P	CATCAGTGGCGTC	.	121	18	84	0	.	91	G	34189528	T	G	34189528	2	3	95	1	0	0	0	0	0	0	0	1	103	1683	59	5		5	ABTB2	11	34189528	Silent	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10		34189528	100816988	34	12146											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46921839	46921839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LRP4	NM_002334	exon3	c.A290T	p.E97V	TCATCCTCACAGT	.	190	74	120	0	.	94	A	46921839	T	A	46921839	3	1	95	1	0	0	0	0	1	0	0	0	8959	1551	54	4	5571	4	LRP4	11	46921839	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	12732311	46921839	88084677	35	12147											
ACY3	91703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67413176	67413176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ACY3	NM_080658	exon4	c.G419A	p.C140Y	TGGCGGCACAGGT	.	180	88	112	1	.	90	T	67413176	C	T	67413176	3	4	95	1	0	0	0	0	1	0	0	0	227	710	25	3	560	3	ACY3	11	67413176	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	20491337	67413176	67593340	36	12148											
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53216820	53216820	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	KRT79	NM_175834	exon7	c.T1347C	p.L449L	CTCCAGAAGCTTG	.	65	18	60	0	.	72	G	53216820	A	G	53216820	2	3	95	1	0	0	0	0	0	0	0	1	8492	233	9	2		2	KRT79	12	53216820	Silent	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		53216820	80635075	37	12149											
CRY1	1407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	107393336	107393336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CRY1	NM_004075	exon7	c.G1130C	p.G377A	TTCATTCCTTCTT	.	80	29	93	0	.	93	G	107393336	C	G	107393336	3	3	95	1	0	0	0	0	1	0	0	0	3903	855	30	4	654	4	CRY1	12	107393336	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	54176516	107393336	26458559	38	12150											
CLN5	1203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	77566254	77566254	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CLN5	NM_006493	exon1	c.G168C	p.T56T	AGACACGGCACAG	.	32	5	25	0	.	91	C	77566254	G	C	77566254	2	2	95	1	0	0	0	0	0	0	0	1	3544	1103	39	4		4	CLN5	13	77566254	Silent	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		77566254	37603624	39	12151											
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103705045	103705045	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SLC10A2	NM_000452	exon3	c.T510A	p.V170V	GAGAGAAACCAGA	.	94	25	87	0	.	94	T	103705045	A	T	103705045	2	4	95	1	0	0	0	0	0	0	0	1	14374	1	1	4		4	SLC10A2	13	103705045	Silent	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10	26138791	103705045	11464833	40	12152											
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35255190	35255190	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	BAZ1A	NM_013448	exon14	c.T1624C	p.L542L	GATCCAAACTTTT	.	16	4	30	0	.	291	G	35255190	A	G	35255190	2	3	95	1	0	0	0	0	0	0	0	1	1329	11	1	2		2	BAZ1A	14	35255190	Silent	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		35255190	72094350	41	12153											
TMEM62	80021	ucsc.edu;bcgsc.ca	37	15	43461808	43461808	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	TMEM62	NM_024956	exon11	c.G1314T	p.V438V	TTTTGTGCTGATT	.	37	4	66	0	.	136	T	43461808	G	T	43461808	2	4	95	1	0	0	0	0	0	0	0	1	16186	1306	46	3		3	TMEM62	15	43461808	Silent	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		43461808	59069584	42	12154											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63029258	63029258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	TLN2	NM_015059	exon26	c.T3540G	p.D1180E	TGGAGATGCAGAG	.	279	55	141	0	.	573	G	63029258	T	G	63029258	3	3	95	1	0	0	0	0	1	0	0	0	15945	1461	51	5	3642	5	TLN2	15	63029258	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10	19567450	63029258	39502134	43	12155											
CELF6	60677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	72582280	72582280	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CELF6	NM_001172684	exon5	c.G603A	p.A201A	CCTCACCGCCATG	.	91	5	78	0	.	154	T	72582280	C	T	72582280	2	4	95	1	0	0	0	0	0	0	0	1	3220	666	23	1		1	CELF6	15	72582280	Silent	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	9553022	72582280	29949112	44	12156											
ALPK3	57538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85400702	85400702	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ALPK3	NM_020778	exon6	c.A3339C	p.T1113T	CCCAACACTGCAC	.	100	53	89	1	.	337	C	85400702	A	C	85400702	2	2	95	1	0	0	0	0	0	0	0	1	546	146	6	5		5	ALPK3	15	85400702	Silent	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10	12818422	85400702	17130690	45	12157											
GFOD2	81577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67709857	67709857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	GFOD2	NM_030819	exon3	c.T359C	p.V120A	TTCCCTACCAGGC	.	146	45	128	0	.	93	G	67709857	A	G	67709857	3	3	95	1	0	0	0	0	1	0	0	0	6344	391	14	2	802	2	GFOD2	16	67709857	Missense_Mutation	SNP	A	TCGA-DD-A4NO-01A-11D-A28X-10		67709857	22644896	46	12158											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60064481	60064481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	MED13	NM_005121	exon12	c.C2272T	p.R758C	TAGGGCGTGGAGC	.	189	57	134	0	.	136	A	60064481	G	A	60064481	3	1	95	1	0	0	0	0	1	0	0	0	9430	1145	40	1	4328	1	MED13	17	60064481	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		60064481	21130729	47	12159											
FASN	2194	broad.mit.edu;bcgsc.ca	37	17	80040554	80040554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	FASN	NM_004104	exon34	c.G5768A	p.G1923D	TGGTAGCCTGCGG	.	127	62	73	2	.	90	T	80040554	C	T	80040554	3	4	95	1	0	0	0	0	1	0	0	0	5683	753	26	3	1807	3	FASN	17	80040554	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10	19976073	80040554	1154656	48	12160											
PTPRM	5797	broad.mit.edu;ucsc.edu	37	18	8247842	8247842	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PTPRM	NM_002845	exon16	c.2453-1G>T	.	TTTACAGCTGTGT	.	65	12	61	1	.	228	T	8247842	G	T	8247842	5	4	95	1	0	0	0	0	0	0	1	0	12806	985	34	3	2514	3	PTPRM	18	8247842	Splice_Site	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		8247842	69829406	49	12161											
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	34647263	34647263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	KIAA1328	NM_020776	exon7	c.G987C	p.K329N	TCCTAAGACACAT	.	229	18	196	0	.	90	C	34647263	G	C	34647263	3	2	95	1	0	0	0	0	1	0	0	0	8225	933	33	4	1013	4	KIAA1328	18	34647263	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	26399421	34647263	43429985	50	12162											
TIMM13	26517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2427289	2427289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	TIMM13	NM_012458	exon2	c.G154A	p.G52R	GTTTCCCTATACA	.	73	25	39	0	.	90	T	2427289	C	T	2427289	3	4	95	1	0	0	0	0	1	0	0	0	15903	681	24	3	141	3	TIMM13	19	2427289	Missense_Mutation	SNP	C	TCGA-DD-A4NO-01A-11D-A28X-10		2427289	56701694	51	12163											
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17720864	17720864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	UNC13A	NM_001080421	exon41	c.C4696T	p.R1566W	ACGGCCGGAAGAT	.	199	73	118	0	.	25	A	17720864	G	A	17720864	3	1	95	1	0	0	0	0	1	0	0	0	16981	1115	39	1	423	1	UNC13A	19	17720864	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	15293575	17720864	41408119	52	12164											
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39914693	39914693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PLEKHG2	NM_022835	exon19	c.G2920A	p.D974N	TTCTCTGATCAAG	.	167	82	130	0	.	274	A	39914693	G	A	39914693	3	1	95	1	0	0	0	0	1	0	0	0	12069	1290	45	3	2990	3	PLEKHG2	19	39914693	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10	22193829	39914693	19214290	53	12165											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60893664	60893664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LAMA5	NM_005560	exon53	c.A7085C	p.E2362A	TGGTTCTCCTCCC	.	251	27	129	0	.	93	G	60893664	T	G	60893664	3	3	95	1	0	0	0	0	1	0	0	0	8609	1551	54	5	4114	5	LAMA5	20	60893664	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10		60893664	2131856	54	12166											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29440871	29440871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ZNRF3	NM_001206998	exon5	c.G737A	p.R246H	AGCGACGCAGTCA	.	158	47	103	0	.	69	A	29440871	G	A	29440871	3	1	95	1	0	0	0	0	1	0	0	0	18210	1087	38	1	451	1	ZNRF3	22	29440871	Missense_Mutation	SNP	G	TCGA-DD-A4NO-01A-11D-A28X-10		29440871	21863695	55	12167											
BMX	660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15560134	15560134	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	BMX	NM_001721	exon15	c.T1424A	p.F475Y	TTAAATTCTATGG	.	124	93	98	0	.	541	A	15560134	T	A	15560134	3	1	95	1	0	0	0	0	1	0	0	0	1473	1783	62	4	1478	4	BMX	23	15560134	Missense_Mutation	SNP	T	TCGA-DD-A4NO-01A-11D-A28X-10		15560134	139710426	56	12168											
CYSLTR1	10800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	77528826	77528827	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CYSLTR1	NM_006639	exon3	c.418_419insA	p.A140fs	ACCTGGCTTTTTT	.	62	41	71	0	.	131	T	77528827	-	T	77528826	7	5	95	1	0	1	1	0	0	0	0	0	4201	797	28	0	599	0	CYSLTR1	23	77528826	Frame_Shift_Ins	INS	-	TCGA-DD-A4NO-01A-11D-A28X-10	61968692	77528826	77741734	57	12169											
RPS6KA1	6195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26881119	26881119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	RPS6KA1	NM_001006665	exon8	c.G673A	p.E225K	GACCACGAGAAGA	.	232	75	150	0	.	510	A	26881119	G	A	26881119	3	1	96	1	0	0	0	0	1	0	0	0	13650	1059	37	1	819	1	RPS6KA1	1	26881119	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10		26881119	222369502	1	12170											
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188410	152188410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HRNR	NM_001009931	exon3	c.C5695A	p.Q1899K	CGTGTTGTTCGTA	.	2282	98	1303	2	.	93	T	152188410	G	T	152188410	3	4	96	1	0	0	0	0	1	0	0	0	7359	1386	48	3	2861	3	HRNR	1	152188410	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10	125307291	152188410	97062211	2	12171											
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255146	156255146	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMEM79	NM_032323	exon2	c.A129C	p.G43G	CCCGGGAGCTGAG	.	121	38	92	0	.	90	C	156255146	A	C	156255146	2	2	96	1	0	0	0	0	0	0	0	1	16200	291	11	5		5	TMEM79	1	156255146	Silent	SNP	A	TCGA-DD-A4NP-01A-11D-A28X-10	4066736	156255146	92995475	3	12172											
PPP1R12B	4660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202462434	202462434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PPP1R12B	NM_002481	exon15	c.C2134A	p.L712M	AGGAGTCTGGATG	.	394	144	277	0	.	229	A	202462434	C	A	202462434	3	1	96	1	0	0	0	0	1	0	0	0	12355	912	32	3	2282	3	PPP1R12B	1	202462434	Missense_Mutation	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10	46207288	202462434	46788187	4	12173											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38791583	38791583	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SCN10A	NM_006514	exon12	c.C1848A	p.I616I	GGTTATGATACTG	.	134	38	105	0	.	99	T	38791583	G	T	38791583	2	4	96	1	0	0	0	0	0	0	0	1	13912	1280	45	3		3	SCN10A	3	38791583	Silent	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10		38791583	159230847	5	12174											
EXOC3	11336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	462103	462103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	EXOC3	NM_007277	exon8	c.G1420A	p.E474K	TATAAAGAAGAGC	.	271	75	149	2	.	90	A	462103	G	A	462103	3	1	96	1	0	0	0	0	1	0	0	0	5303	943	33	3	1446	3	EXOC3	5	462103	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10		462103	180453157	6	12175											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260044	55260049	+	In_Frame_Del	DEL	GACTTC	GACTTC	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GACTTC	GACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	IL6ST	NM_175767	exon6	c.583_588del	p.195_196del	TACCCAGACTTCA	.	135	14	113	0	.	290	-	55260049	GACTTC	-	55260044	7	5	96	1	0	1	0	1	0	0	0	0	7703	929	33	0	2216	0	IL6ST	5	55260044	In_Frame_Del	DEL	GACTTC	TCGA-DD-A4NP-01A-11D-A28X-10	54797941	55260044	125655216	7	12176											
FAM169A	26049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74100401	74100401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	FAM169A	NM_015566	exon8	c.A829G	p.M277V	CAGACATAGGTCT	.	22	5	20	0	.	22	C	74100401	T	C	74100401	3	2	96	1	0	0	0	0	1	0	0	0	5487	1406	49	2	1207	2	FAM169A	5	74100401	Missense_Mutation	SNP	T	TCGA-DD-A4NP-01A-11D-A28X-10	18840357	74100401	106814859	8	12177											
APC	324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	112111324	112111324	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	APC,NS,carcinoma,-2	APC	NM_001127511	exon4	c.453-2A>G	.	AAAAATAGGTCAT	.	49	21	50	0	.	12026	G	112111324	A	G	112111324	5	3	96	1	0	0	0	0	0	0	1	0	763	434	15	2	435	2	APC	5	112111324	Splice_Site	SNP	A	TCGA-DD-A4NP-01A-11D-A28X-10	38010923	112111324	68803936	9	12178											
HDAC3	8841	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	141007750	141007750	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HDAC3	NM_003883	exon9	c.C696G	p.Y232X	GTGCTTGTAACCT	.	175	53	121	1	.	227	C	141007750	G	C	141007750	4	2	96	1	0	0	0	0	0	1	0	0	7008	1372	48	4	618	4	HDAC3	5	141007750	Nonsense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10	28896426	141007750	39907510	10	12179											
ADAMTS2	9509	broad.mit.edu;bcgsc.ca	37	5	178541281	178541281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ADAMTS2	NM_014244	exon22	c.G3223A	p.V1075I	ACAAGACTTCCAT	.	162	41	119	2	.	228	T	178541281	C	T	178541281	3	4	96	1	0	0	0	0	1	0	0	0	265	565	20	3	416	3	ADAMTS2	5	178541281	Missense_Mutation	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10	37533531	178541281	2373979	11	12180											
TUBB2A	7280	hgsc.bcm.edu;broad.mit.edu	37	6	3154966	3154966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TUBB2A	NM_001069	exon4	c.469delG	p.E157fs	ACTCTTCCCGGAT	.	321	69	223	0	.	92	-	3154966	C	-	3154966	7	5	96	1	0	1	0	1	0	0	0	0	16751	864	30	0	872	0	TUBB2A	6	3154966	Frame_Shift_Del	DEL	C	TCGA-DD-A4NP-01A-11D-A28X-10		3154966	167960101	12	12181											
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	57012123	57012123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF451	NM_001031623	exon10	c.G1240A	p.D414N	TCTTCTGACTTGC	.	82	7	65	0	.	93	A	57012123	G	A	57012123	3	1	96	1	0	0	0	0	1	0	0	0	17919	1290	45	3	1278	3	ZNF451	6	57012123	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10	53857157	57012123	114102944	13	12182											
BET1	10282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	93628605	93628605	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	BET1	NM_005868	exon2	c.T21C	p.G7G	TCCTTCACCTGCA	.	46	16	40	0	.	90	G	93628605	A	G	93628605	2	3	96	1	0	0	0	0	0	0	0	1	1408	173	6	2		2	BET1	7	93628605	Silent	SNP	A	TCGA-DD-A4NP-01A-11D-A28X-10		93628605	65510058	14	12183											
ZNF800	168850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127026146	127026146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF800	NM_176814	exon3	c.G125C	p.G42A	TGAATACCAGATT	.	41	10	34	0	.	23	G	127026146	C	G	127026146	3	3	96	1	0	0	0	0	1	0	0	0	18166	507	18	4	1885	4	ZNF800	7	127026146	Missense_Mutation	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10	33397541	127026146	32112517	15	12184											
PTN	5764	hgsc.bcm.edu;bcgsc.ca	37	7	136938301	136938301	+	Silent	SNP	G	G	T	rs149012204	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PTN	NM_002825	exon3	c.C199A	p.R67R	CCTCCCGTGTGCC	.	82	4	60	0	G|1.000;A|0.000	516	T	136938301	G	T	136938301	2	4	96	1	0	0	0	0	0	0	0	1	12768	1144	40	1		1	PTN	7	136938301	Silent	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10	9912155	136938301	22200362	16	12185											
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38133282	38133282	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WHSC1L1	NM_023034	exon24	c.T4191A	p.S1397S	CAGTGCAGAGGGA	.	70	23	45	0	.	658	T	38133282	A	T	38133282	2	4	96	1	0	0	0	0	0	0	0	1	17360	175	7	4		4	WHSC1L1	8	38133282	Silent	SNP	A	TCGA-DD-A4NP-01A-11D-A28X-10		38133282	108230740	17	12186											
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128003101	128003101	+	Missense_Mutation	SNP	G	G	T	rs200897884	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HSPA5	NM_005347	exon2	c.C208A	p.P70T	CTTCAGGAGTGAA	.	235	63	168	1	G|0.999;A|0.000	230	T	128003101	G	T	128003101	3	4	96	1	0	0	0	0	1	0	0	0	7414	1174	41	3	1784	3	HSPA5	9	128003101	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10		128003101	13210330	18	12187											
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	68686847	68686847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LRRTM3	NM_178011	exon2	c.G173C	p.S58T	CCTCAAGTATATC	.	59	21	48	0	.	93	C	68686847	G	C	68686847	3	2	96	1	0	0	0	0	1	0	0	0	9041	1029	36	4	179	4	LRRTM3	10	68686847	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10		68686847	66847900	19	12188											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115374663	115374663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	NRAP	NM_001261463	exon28	c.T3121A	p.Y1041N	GTTTATAGCCACC	.	235	73	146	0	.	522	T	115374663	A	T	115374663	3	4	96	1	0	0	0	0	1	0	0	0	10638	420	15	4	2131	4	NRAP	10	115374663	Missense_Mutation	SNP	A	TCGA-DD-A4NP-01A-11D-A28X-10	46687816	115374663	20160084	20	12189											
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49374348	49374348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WNT1	NM_005430	exon3	c.G500T	p.W167L	GGCACTGGGGGGG	.	145	52	92	0	.	1083	T	49374348	G	T	49374348	3	4	96	1	0	0	0	0	1	0	0	0	17378	1357	47	3	510	3	WNT1	12	49374348	Missense_Mutation	SNP	G	TCGA-DD-A4NP-01A-11D-A28X-10		49374348	84477547	21	12190											
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108929239	108929239	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SART3	NM_014706	exon12	c.A1452G	p.R484R	GCACAGTCGAGCC	.	163	25	99	0	.	91	C	108929239	T	C	108929239	2	2	96	1	0	0	0	0	0	0	0	1	13847	1654	58	2		2	SART3	12	108929239	Silent	SNP	T	TCGA-DD-A4NP-01A-11D-A28X-10	59554891	108929239	24922656	22	12191											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123815842	123815842	+	Silent	SNP	C	C	T	rs74679372	byfrequency;alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SBNO1	NM_001167856	exon7	c.G990A	p.T330T	TGCTATCGTCCTT	.	104	39	63	0	C|0.999;A|0.001	292	T	123815842	C	T	123815842	2	4	96	1	0	0	0	0	0	0	0	1	13862	871	31	1		1	SBNO1	12	123815842	Silent	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10	14886603	123815842	10036053	23	12192											
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22369299	22369299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR4M2	NM_001004719	exon1	c.T724A	p.C242S	TCCACCTGCTATT	.	333	69	272	0	.	69	A	22369299	T	A	22369299	3	1	96	1	0	0	0	0	1	0	0	0	11076	1580	55	4	726	4	OR4M2	15	22369299	Missense_Mutation	SNP	T	TCGA-DD-A4NP-01A-11D-A28X-10		22369299	80162093	24	12193											
SAMD4B	55095	broad.mit.edu;bcgsc.ca	37	19	39866423	39866423	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SAMD4B	NM_018028	exon7	c.C801T	p.H267H	CGATCACGCACCT	.	61	6	41	0	.	90	T	39866423	C	T	39866423	2	4	96	1	0	0	0	0	0	0	0	1	13822	535	19	1		1	SAMD4B	19	39866423	Silent	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10		39866423	19262560	25	12194											
ARHGEF1	9138	broad.mit.edu;bcgsc.ca	37	19	42409130	42409130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ARHGEF1	NM_199002	exon23	c.T2236G	p.W746G	TTTACCTGGGACC	.	63	7	46	0	.	293	G	42409130	T	G	42409130	3	3	96	1	0	0	0	0	1	0	0	0	893	1580	55	5	2326	5	ARHGEF1	19	42409130	Missense_Mutation	SNP	T	TCGA-DD-A4NP-01A-11D-A28X-10	2542707	42409130	16719853	26	12195											
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50794186	50794186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MYH14	NM_001145809	exon36	c.C5008T	p.R1670C	AAGCAGCGCACTC	.	270	86	165	0	.	23	T	50794186	C	T	50794186	3	4	96	1	0	0	0	0	1	0	0	0	10033	768	27	1	5146	1	MYH14	19	50794186	Missense_Mutation	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10	8385056	50794186	8334797	27	12196											
TOMM34	10953	broad.mit.edu;bcgsc.ca	37	20	43588912	43588913	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	p.R21L	GCCGTTGCGGAAA	.	257	81	134	1	.	.	AA	43588913	GC	AA	43588912	3	1	96	1	0	0	0	0	1	0	0	0	16354	1306	46	3	894	3	TOMM34	20	43588912	Missense_Mutation	DNP	GC	TCGA-DD-A4NP-01A-11D-A28X-10		43588912	19436608	28	12197											
SLC19A1	6573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46951887	46951887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SLC19A1	NM_001205206	exon3	c.T365C	p.M122T	AGCTCCATGAGCT	.	55	7	40	0	.	90	G	46951887	A	G	46951887	3	3	96	1	0	0	0	0	1	0	0	0	14428	217	8	2	1426	2	SLC19A1	21	46951887	Missense_Mutation	SNP	A	TCGA-DD-A4NP-01A-11D-A28X-10		46951887	1178008	29	12198											
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30640773	30640773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LIF	NM_002309	exon2	c.G169A	p.G57S	CACTGCCATTGAG	.	221	11	157	0	.	650	T	30640773	C	T	30640773	3	4	96	1	0	0	0	0	1	0	0	0	8779	594	21	3	447	3	LIF	22	30640773	Missense_Mutation	SNP	C	TCGA-DD-A4NP-01A-11D-A28X-10		30640773	20663793	30	12199											
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1277480	1277480	+	Missense_Mutation	SNP	A	A	G	rs147424815		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DVL1	NM_004421	exon4	c.T419C	p.M140T	CTGACCATGGACT	.	150	27	153	0	A|1.000;G|0.000	658	G	1277480	A	G	1277480	3	3	97	1	0	0	0	0	1	0	0	0	4835	217	8	2	1641	2	DVL1	1	1277480	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10		1277480	247973141	1	12200											
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7700465	7700465	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CAMTA1	NM_015215	exon7	c.C516T	p.P172P	GAACCCCGACATC	.	130	27	137	0	.	520	T	7700465	C	T	7700465	2	4	97	1	0	0	0	0	0	0	0	1	2613	639	23	1		1	CAMTA1	1	7700465	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	6422985	7700465	241550156	2	12201											
MFAP2	4237	hgsc.bcm.edu;bcgsc.ca	37	1	17301519	17301519	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MFAP2	NM_001135248	exon10	c.446-1G>C	.	GGTCAGCTATTGG	.	114	19	125	0	.	514	G	17301519	C	G	17301519	5	3	97	1	0	0	0	0	0	0	1	0	9514	811	28	4	107	4	MFAP2	1	17301519	Splice_Site	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	9601054	17301519	231949102	3	12202											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27941376	27941376	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FGR	NM_001042729	exon10	c.G1080T	p.V360V	CATGTCCACCAAT	.	147	19	204	0	.	547	A	27941376	C	A	27941376	2	1	97	1	0	0	0	0	0	0	0	1	5874	581	21	3		3	FGR	1	27941376	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	10639857	27941376	221309245	4	12203											
IPP	3652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46165836	46165836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	IPP	NM_001145349	exon9	c.G1557T	p.M519I	CACTTTCATTGAG	.	34	6	38	0	.	91	A	46165836	C	A	46165836	3	1	97	1	0	0	0	0	1	0	0	0	7800	826	29	3	303	3	IPP	1	46165836	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	18224460	46165836	203084785	5	12204											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114380848	114380848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PTPN22	NM_015967	exon13	c.G1174A	p.D392N	TTGTGTCAGCATT	.	52	8	53	0	.	227	T	114380848	C	T	114380848	3	4	97	1	0	0	0	0	1	0	0	0	12787	826	29	3	1308	3	PTPN22	1	114380848	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	68215012	114380848	134869773	6	12205											
TTC24	164118	bcgsc.ca;mdanderson.org	37	1	156551495	156551495	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TTC24	NM_001105669	exon2	c.C339T	p.G113G	ACAGGGCAGGCGA	.	172	18	182	1	.	46	T	156551495	C	T	156551495	2	4	97	1	0	0	0	0	0	0	0	1	16689	697	25	3		3	TTC24	1	156551495	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	42170647	156551495	92699126	7	12206											
OR10J5	127385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159504893	159504893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR10J5	NM_001004469	exon1	c.G905C	p.R302T	ACAACTCTGCATA	.	52	7	46	0	.	71	G	159504893	C	G	159504893	3	3	97	1	0	0	0	0	1	0	0	0	10912	913	32	4	26	4	OR10J5	1	159504893	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	2953398	159504893	89745728	8	12207											
FCRLB	127943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161697408	161697408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FCRLB	NM_001002901	exon6	c.G1237A	p.A413T	CACTTTGCTGTGA	.	123	8	115	0	.	22	A	161697408	G	A	161697408	3	1	97	1	0	0	0	0	1	0	0	0	5801	1319	46	3	1259	3	FCRLB	1	161697408	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	2192515	161697408	87553213	9	12208											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767462	181767462	+	Missense_Mutation	SNP	C	C	G	rs189356042	by1000genomes;alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CACNA1E	NM_001205293	exon48	c.C6434G	p.S2145C	TCCCCTCTGTCTC	.	36	9	33	0	C|0.999;T|0.000	95	G	181767462	C	G	181767462	3	3	97	1	0	0	0	0	1	0	0	0	2542	913	32	4	6491	4	CACNA1E	1	181767462	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	20070054	181767462	67483159	10	12209											
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	231344856	231344857	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TRIM67	NM_001004342	exon8	c.1983_1984insA	p.D661fs	GTACGACAACCAC	.	274	84	246	0	.	229	A	231344857	-	A	231344856	7	5	97	1	0	1	1	0	0	0	0	0	16537	477	17	0	2013	0	TRIM67	1	231344856	Frame_Shift_Ins	INS	-	TCGA-DD-A4NQ-01A-21D-A28X-10	49577394	231344856	17905765	11	12210											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235973623	235973623	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LYST	NM_000081	exon5	c.C495A	p.T165T	ATCTGAGGTGGAG	.	92	20	83	0	.	143	T	235973623	G	T	235973623	2	4	97	1	0	0	0	0	0	0	0	1	9128	987	35	3		3	LYST	1	235973623	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	4628767	235973623	13276998	12	12211											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237778097	237778097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RYR2	NM_001035	exon37	c.A5669C	p.K1890T	GGCCCAAGGAAGG	.	156	30	185	0	.	158	C	237778097	A	C	237778097	3	2	97	1	0	0	0	0	1	0	0	0	13769	72	3	5	5815	5	RYR2	1	237778097	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	1804474	237778097	11472524	13	12212											
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10095217	10095217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRHL1	NM_198182	exon2	c.A194G	p.Y65C	TGCTCTATGACTA	.	110	16	132	0	.	92	G	10095217	A	G	10095217	3	3	97	1	0	0	0	0	1	0	0	0	6763	449	16	2	200	2	GRHL1	2	10095217	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10		10095217	233104156	14	12213											
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74745708	74745708	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DQX1	NM_133637	exon12	c.A2019T	p.P673P	GAAGTATGGAGGG	.	139	24	147	0	.	92	A	74745708	T	A	74745708	2	1	97	1	0	0	0	0	0	0	0	1	4751	1451	51	4		4	DQX1	2	74745708	Silent	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	64650491	74745708	168453665	15	12214											
LMAN2L	81562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97405772	97405772	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LMAN2L	NM_030805	exon1	c.G6A	p.A2A	AGTCGCCGCCATC	.	37	9	22	0	.	90	T	97405772	C	T	97405772	2	4	97	1	0	0	0	0	0	0	0	1	8839	639	23	1		1	LMAN2L	2	97405772	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	22660064	97405772	145793601	16	12215											
RGPD3	653489	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107041399	107041399	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RGPD3	NM_001144013	exon20	c.C3024T	p.Y1008Y	TTTACCGTATTGT	.	95	11	105	1	.	23	A	107041399	G	A	107041399	2	1	97	1	0	0	0	0	0	0	0	1	13287	1140	40	1		1	RGPD3	2	107041399	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	9635627	107041399	136157974	17	12216											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121554929	121554929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GLI2	NM_005270	exon1	c.G33T	p.E11D	CTCCGAGAAGCAA	.	68	15	73	0	.	954	T	121554929	G	T	121554929	3	4	97	1	0	0	0	0	1	0	0	0	6438	933	33	3	35	3	GLI2	2	121554929	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	14513530	121554929	121644444	18	12217											
TUBA3D	113457	ucsc.edu;bcgsc.ca	37	2	132238309	132238309	+	Missense_Mutation	SNP	C	C	A	rs200206202	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBA3D	NM_080386	exon4	c.C1043A	p.P348Q	GGTGCCCGACTGG	.	132	18	164	2	C|0.999;T|0.000	44	A	132238309	C	A	132238309	3	1	97	1	0	0	0	0	1	0	0	0	16744	652	23	1	1057	1	TUBA3D	2	132238309	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	10683380	132238309	110961064	19	12218											
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160242941	160242941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BAZ2B	NM_013450	exon22	c.A3394T	p.M1132L	CACCCATGCTGTC	.	61	10	98	0	.	94	A	160242941	T	A	160242941	3	1	97	1	0	0	0	0	1	0	0	0	1332	1464	51	4	3176	4	BAZ2B	2	160242941	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	28004632	160242941	82956432	20	12219											
HOXD9	3235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176988265	176988265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HOXD9	NM_014213	exon1	c.G769C	p.E257Q	CTGAAGGAGGAGG	.	70	12	91	0	.	90	C	176988265	G	C	176988265	3	2	97	1	0	0	0	0	1	0	0	0	7326	1175	41	4	771	4	HOXD9	2	176988265	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	16745324	176988265	66211108	21	12220											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186673299	186673299	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FSIP2	NM_173651	exon17	c.C19533T	p.V6511V	GGTTGTCGATTCC	.	98	16	127	0	.	90	T	186673299	C	T	186673299	2	4	97	1	0	0	0	0	0	0	0	1	6075	871	31	1		1	FSIP2	2	186673299	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	9685034	186673299	56526074	22	12221											
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187465066	187465066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITGAV	NM_001144999	exon1	c.T5C	p.L2P	AAATGCTCCTAGG	.	49	7	71	0	.	653	C	187465066	T	C	187465066	3	2	97	1	0	0	0	0	1	0	0	0	7888	1551	54	2	196	2	ITGAV	2	187465066	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	791767	187465066	55734307	23	12222											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227906897	227906897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	COL4A4	NM_000092	exon37	c.G3472T	p.D1158Y	CTGGATCCCCCTG	.	45	7	56	0	.	142	A	227906897	C	A	227906897	3	1	97	1	0	0	0	0	1	0	0	0	3693	855	30	3	1648	3	COL4A4	2	227906897	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	40441831	227906897	15292476	24	12223											
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13612210	13612210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FBLN2	NM_001998	exon2	c.C355T	p.P119S	CTGCCGCCCAACT	.	108	21	75	0	.	91	T	13612210	C	T	13612210	3	4	97	1	0	0	0	0	1	0	0	0	5699	739	26	3		3	FBLN2	3	13612210	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10		13612210	184410220	25	12224											
LTF	4057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46492064	46492064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LTF	NM_002343	exon7	c.G803T	p.R268L	GGGACCCGGGCCA	.	150	25	178	0	.	703	A	46492064	C	A	46492064	3	1	97	1	0	0	0	0	1	0	0	0	9079	652	23	1	1373	1	LTF	3	46492064	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	32879854	46492064	151530366	26	12225											
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52864633	52864633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITIH4	NM_001166449	exon1	c.C26T	p.T9I	CTGCAGGTACGGA	.	134	28	142	1	.	46	A	52864633	G	A	52864633	3	1	97	1	0	0	0	0	1	0	0	0	7906	1261	44	3	2862	3	ITIH4	3	52864633	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	6372569	52864633	145157797	27	12226											
C3orf67	200844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58849427	58849427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	C3orf67	NM_198463	exon12	c.C1075T	p.P359S	ATCGTGGTCTTGA	.	77	13	94	0	.	68	A	58849427	G	A	58849427	3	1	97	1	0	0	0	0	1	0	0	0	2241	1261	44	3	636	3	C3orf67	3	58849427	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	5984794	58849427	139173003	28	12227											
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97868812	97868812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR5H14	NM_001005514	exon1	c.A583T	p.N195Y	TCTATTAACTTTC	.	52	15	62	0	.	91	T	97868812	A	T	97868812	3	4	97	1	0	0	0	0	1	0	0	0	11160	362	13	4	585	4	OR5H14	3	97868812	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	39019385	97868812	100153618	29	12228											
WDR49	151790	broad.mit.edu;bcgsc.ca	37	3	167272493	167272493	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	WDR49	NM_178824	exon6	c.745delA	p.I249fs	CCAGTATTTTCTT	.	24	9	40	0	.	155	-	167272493	T	-	167272493	7	5	97	1	0	1	0	1	0	0	0	0	17299	1493	52	0	1388	0	WDR49	3	167272493	Frame_Shift_Del	DEL	T	TCGA-DD-A4NQ-01A-21D-A28X-10	69403681	167272493	30749937	30	12229											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7787959	7787959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AFAP1	NM_001134647	exon12	c.G1492A	p.A498T	GAAGTGCCGTCCC	.	98	19	137	0	.	90	T	7787959	C	T	7787959	3	4	97	1	0	0	0	0	1	0	0	0	353	739	26	3	980	3	AFAP1	4	7787959	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10		7787959	183366317	31	12230											
GUF1	60558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44682735	44682735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GUF1	NM_021927	exon3	c.A302G	p.N101S	AGAATAATAAGCA	.	92	20	137	2	.	91	G	44682735	A	G	44682735	3	3	97	1	0	0	0	0	1	0	0	0	6899	101	4	2	312	2	GUF1	4	44682735	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	36894776	44682735	146471541	32	12231											
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122853884	122853884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TRPC3	NM_001130698	exon2	c.G529A	p.D177N	GGGCGTCGCCAAT	.	132	28	152	0	.	92	T	122853884	C	T	122853884	3	4	97	1	0	0	0	0	1	0	0	0	16576	884	31	1	2280	1	TRPC3	4	122853884	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	78171149	122853884	68300392	33	12232											
KLHL2	11275	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	166149976	166149976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	KLHL2	NM_001161521	exon3	c.A182T	p.D61V	TGTGCGATGTCAC	.	273	27	372	0	.	226	T	166149976	A	T	166149976	3	4	97	1	0	0	0	0	1	0	0	0	8374	333	12	4	222	4	KLHL2	4	166149976	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	43296092	166149976	25004300	34	12233											
PDLIM3	27295	broad.mit.edu;bcgsc.ca	37	4	186446243	186446247	+	Frame_Shift_Del	DEL	GACTC	GACTC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	GACTC	GACTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PDLIM3	NM_001257962	exon2	c.172_176del	p.58_59del	GTCATGGACTCTG	.	73	8	108	0	.	92	-	186446247	GACTC	-	186446243	7	5	97	1	0	1	0	1	0	0	0	0	11681	1174	41	0	1138	0	PDLIM3	4	186446243	Frame_Shift_Del	DEL	GACTC	TCGA-DD-A4NQ-01A-21D-A28X-10	20296267	186446243	4708033	35	12234											
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35704679	35704679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPEF2	NM_024867	exon17	c.G2422A	p.A808T	AAAACTGCTCACG	.	40	7	63	0	.	26	A	35704679	G	A	35704679	3	1	97	1	0	0	0	0	1	0	0	0	15034	1319	46	3	2509	3	SPEF2	5	35704679	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		35704679	145210581	36	12235											
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182464	140182464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PCDHA3	NM_031497	exon1	c.A1682G	p.N561S	ACGACAACGCGCC	.	133	14	41	0	.	98	G	140182464	A	G	140182464	3	3	97	1	0	0	0	0	1	0	0	0	11525	43	2	2	1684	2	PCDHA3	5	140182464	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	104477785	140182464	40732796	37	12236											
GABBR1	2550	broad.mit.edu;bcgsc.ca	37	6	29580368	29580368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GABBR1	NM_001470	exon13	c.C1590A	p.S530R	AGAGCCGCTGGCA	.	60	6	46	0	.	521	T	29580368	G	T	29580368	3	4	97	1	0	0	0	0	1	0	0	0	6155	1078	38	1	1339	1	GABBR1	6	29580368	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		29580368	141534699	38	12237											
FYN	2534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112035597	112035597	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FYN	NM_153047	exon2	c.T297C	p.D99D	CAGGTCATCTTCT	.	40	5	60	0	.	1000	G	112035597	A	G	112035597	2	3	97	1	0	0	0	0	0	0	0	1	6126	214	8	2		2	FYN	6	112035597	Silent	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	82455229	112035597	59079470	39	12238											
TUBE1	51175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112408473	112408484	+	In_Frame_Del	DEL	CAGAAGCAGCAG	CAGAAGCAGCAG	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	CAGAAGCAGCAG	CAGAAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBE1	NM_016262	exon2	c.51_62del	p.17_21del	AGGTCCCAGAAGC	.	261	22	307	0	.	91	-	112408484	CAGAAGCAGCAG	-	112408473	7	5	97	1	0	1	0	1	0	0	0	0	16760	595	21	0	1409	0	TUBE1	6	112408473	In_Frame_Del	DEL	CAGAAGCAGCAG	TCGA-DD-A4NQ-01A-21D-A28X-10	372876	112408473	58706594	40	12239			1	12		2	2	17	N	T_CAGAAGCAGCAG	5.116689e-05
TUBE1	51175	hgsc.bcm.edu;bcgsc.ca	37	6	112408489	112408489	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBE1	NM_016262	exon2	c.A46T	p.I16F	AGCCGATCTGGTT	.	280	31	336	0	.	91	A	112408489	T	A	112408489	3	1	97	1	0	0	0	0	1	0	0	0	16760	1435	50	4	1425	4	TUBE1	6	112408489	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	16	112408489	58706578	41	12240			1	12		2	2	17	N	T_CAGAAGCAGCAG	5.116689e-05
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112435307	112435307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LAMA4	NM_001105206	exon38	c.G5298C	p.R1766S	AGGCTCCCTGTGA	.	54	8	55	0	.	140	G	112435307	C	G	112435307	3	3	97	1	0	0	0	0	1	0	0	0	8608	622	22	4	181	4	LAMA4	6	112435307	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	26818	112435307	58679760	42	12241											
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2740124	2740124	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AMZ1	NM_133463	exon2	c.G39A	p.G13G	CTTCGGGCCCCGG	.	62	13	55	0	.	90	A	2740124	G	A	2740124	2	1	97	1	0	0	0	0	0	0	0	1	596	1190	42	3		3	AMZ1	7	2740124	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		2740124	156398539	43	12242											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4285345	4285345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SDK1	NM_152744	exon44	c.T6289C	p.S2097P	CACTACTCAGACG	.	140	17	157	0	.	138	C	4285345	T	C	4285345	3	2	97	1	0	0	0	0	1	0	0	0	13968	1551	54	2	6463	2	SDK1	7	4285345	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	1545221	4285345	154853318	44	12243											
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24705233	24705233	+	Silent	SNP	C	C	T	rs201576683		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MPP6	NM_016447	exon8	c.C810T	p.S270S	AGGAAGCGCTGGT	.	88	27	99	0	C|0.999;T|0.000	90	T	24705233	C	T	24705233	2	4	97	1	0	0	0	0	0	0	0	1	9738	767	27	1		1	MPP6	7	24705233	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	20419888	24705233	134433430	45	12244											
HOXA3	3200	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	27148273	27148273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HOXA3	NM_030661	exon3	c.A593G	p.Y198C	CTCGTGTAGGCCG	.	55	8	39	0	.	153	C	27148273	T	C	27148273	3	2	97	1	0	0	0	0	1	0	0	0	7293	1638	57	2	742	2	HOXA3	7	27148273	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	2443040	27148273	131990390	46	12245											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31683502	31683502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001257968	exon11	c.C2596A	p.Q866K	GGTCACCAGGAAG	.	75	11	57	0	.	.	A	31683502	C	A	31683502	3	1	97	1	0	0	0	0	1	0	0	0	2764	595	21	3	2556	3	CCDC129	7	31683502	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	4535229	31683502	127455161	47	12246											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91671427	91671427	+	Missense_Mutation	SNP	C	C	T	rs149244653	by1000genomes	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AKAP9	NM_005751	exon19	c.C4985T	p.A1662V	TGGAAGCACTAAA	.	40	13	63	0	C|0.999;T|0.000	755	T	91671427	C	T	91671427	3	4	97	1	0	0	0	0	1	0	0	0	459	710	25	3	5059	3	AKAP9	7	91671427	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	59987925	91671427	67467236	48	12247											
GIGYF1	64599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100284048	100284048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GIGYF1	NM_022574	exon8	c.C703A	p.P235T	AGCGGGGACCACC	.	60	5	50	0	.	136	T	100284048	G	T	100284048	3	4	97	1	0	0	0	0	1	0	0	0	6377	1174	41	3	2472	3	GIGYF1	7	100284048	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	8612621	100284048	58854615	49	12248											
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143096483	143096483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	EPHA1	NM_005232	exon5	c.A859T	p.M287L	TGTCCATCCGGTA	.	144	44	144	0	.	1436	A	143096483	T	A	143096483	3	1	97	1	0	0	0	0	1	0	0	0	5165	1435	50	4	2127	4	EPHA1	7	143096483	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	42812435	143096483	16042180	50	12249											
OR2A2	442361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	143807041	143807041	+	Nonsense_Mutation	SNP	T	T	A	rs201869620	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR2A2	NM_001005480	exon1	c.T366A	p.Y122X	TAGGTATGTGGCC	.	159	21	143	0	T|0.999;C|0.001	92	A	143807041	T	A	143807041	4	1	97	1	0	0	0	0	0	1	0	0	10977	1471	51	4	368	4	OR2A2	7	143807041	Nonsense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	710558	143807041	15331622	51	12250											
BLK	640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11420535	11420535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BLK	NM_001715	exon12	c.G1228A	p.G410R	CACTTCGGGGTCT	.	172	32	152	0	.	946	A	11420535	G	A	11420535	3	1	97	1	0	0	0	0	1	0	0	0	1444	1116	39	1	1270	1	BLK	8	11420535	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		11420535	134943487	52	12251											
SLC39A14	23516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22273745	22273745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC39A14	NM_001135153	exon7	c.A1099G	p.I367V	CAAGGCATCAGCA	.	147	23	140	0	.	90	G	22273745	A	G	22273745	3	3	97	1	0	0	0	0	1	0	0	0	14617	217	8	2	1295	2	SLC39A14	8	22273745	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	10853210	22273745	124090277	53	12252											
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	42911627	42911627	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FNTA	NM_002027	exon1	c.C138T	p.A46A	GGAAGCCGTGGCG	.	52	14	33	0	.	91	T	42911627	C	T	42911627	2	4	97	1	0	0	0	0	0	0	0	1	5977	639	23	1		1	FNTA	8	42911627	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	20637882	42911627	103452395	54	12253											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77767616	77767616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFHX4	NM_024721	exon10	c.A8459C	p.N2820T	AGGGAAACACTGA	.	43	11	82	0	.	98	C	77767616	A	C	77767616	3	2	97	1	0	0	0	0	1	0	0	0	17632	43	2	5	8493	5	ZFHX4	8	77767616	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	34855989	77767616	68596406	55	12254											
ZFPM2	23414	broad.mit.edu;ucsc.edu	37	8	106813669	106813669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFPM2	NM_012082	exon8	c.A1359T	p.R453S	CCAGAGACCAGAG	.	39	4	44	0	.	139	T	106813669	A	T	106813669	3	4	97	1	0	0	0	0	1	0	0	0	17655	272	10	4	1389	4	ZFPM2	8	106813669	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	29046053	106813669	39550353	56	12255											
ZFAT	57623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	135613836	135613836	+	Missense_Mutation	SNP	C	C	A	rs201041569	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFAT	NM_020863	exon6	c.G2126T	p.R709L	CCTGACCGGTGCT	.	183	33	162	1	C|0.999;T|0.001	90	A	135613836	C	A	135613836	3	1	97	1	0	0	0	0	1	0	0	0	17629	652	23	1	1649	1	ZFAT	8	135613836	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	28800167	135613836	10750186	57	12256											
CISD1	55847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	60037077	60037077	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CISD1	NM_018464	exon2	c.A232T	p.K78X	AGGTCCAAAAAGG	.	181	28	217	0	.	90	T	60037077	A	T	60037077	4	4	97	1	0	0	0	0	0	1	0	0	3435	131	5	4	238	4	CISD1	10	60037077	Nonsense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10		60037077	75497670	58	12257											
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93558647	93558647	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TNKS2	NM_025235	exon1	c.199+1G>T	.	CCGCAGGTAACCG	.	75	12	67	0	.	541	T	93558647	G	T	93558647	5	4	97	1	0	0	0	0	0	0	1	0	16318	1275	44	3	202	3	TNKS2	10	93558647	Splice_Site	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	33521570	93558647	41976100	59	12258											
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661048	4661048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR51D1	NM_001004751	exon1	c.A28G	p.I10V	GTCCCTATCATAG	.	50	8	79	0	.	68	G	4661048	A	G	4661048	3	3	97	1	0	0	0	0	1	0	0	0	11093	449	16	2	30	2	OR51D1	11	4661048	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10		4661048	130345468	60	12259											
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4903313	4903313	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR51T1	NM_001004759	exon1	c.T265A	p.Y89N	CCCATGTATTATT	.	79	16	97	0	.	115	A	4903313	T	A	4903313	3	1	97	1	0	0	0	0	1	0	0	0	11106	1638	57	4	267	4	OR51T1	11	4903313	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	242265	4903313	130103203	61	12260											
OTUB1	55611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63755856	63755856	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OTUB1	NM_017670	exon2	c.C106A	p.R36R	CAGGACCGAATTC	.	82	13	113	1	.	501	A	63755856	C	A	63755856	2	1	97	1	0	0	0	0	0	0	0	1	11311	644	23	1		1	OTUB1	11	63755856	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	58852543	63755856	71250660	62	12261											
NAALADL1	10004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64820704	64820704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NAALADL1	NM_005468	exon8	c.C1184T	p.T395I	AGCAGGGTCCCCA	.	206	31	191	0	.	90	A	64820704	G	A	64820704	3	1	97	1	0	0	0	0	1	0	0	0	10129	1261	44	3	1082	3	NAALADL1	11	64820704	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	1064848	64820704	70185812	63	12262											
DGAT2	84649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509440	75509440	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DGAT2	NM_032564	exon7	c.G978T	p.G326G	CTGGGGGCTGGTG	.	60	12	90	1	.	226	T	75509440	G	T	75509440	2	4	97	1	0	0	0	0	0	0	0	1	4458	1190	42	3		3	DGAT2	11	75509440	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	10688736	75509440	59497076	64	12263											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123489506	123489506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRAMD1B	NM_020716	exon18	c.A2007T	p.E669D	CCAAGAAAGGTAA	.	98	16	102	0	.	69	T	123489506	A	T	123489506	3	4	97	1	0	0	0	0	1	0	0	0	6748	11	1	4	2077	4	GRAMD1B	11	123489506	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	47980066	123489506	11517010	65	12264											
CCDC15	80071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124861393	124861393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CCDC15	NM_025004	exon9	c.G1945A	p.D649N	ATGACAGATGAGA	.	56	5	70	0	.	69	A	124861393	G	A	124861393	3	1	97	1	0	0	0	0	1	0	0	0	2784	942	33	3	1975	3	CCDC15	11	124861393	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	1371887	124861393	10145123	66	12265											
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49919817	49919817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPATS2	NM_023071	exon14	c.A1417G	p.M473V	GACAGTATGGGTC	.	231	49	309	0	.	135	G	49919817	A	G	49919817	3	3	97	1	0	0	0	0	1	0	0	0	15018	449	16	2	1463	2	SPATS2	12	49919817	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10		49919817	83932078	67	12266											
RAB3IP	117177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70206599	70206599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RAB3IP	NM_175623	exon9	c.G1220A	p.R407K	AACACAGAATTAA	.	75	13	116	0	.	227	A	70206599	G	A	70206599	3	1	97	1	0	0	0	0	1	0	0	0	12938	942	33	3	1254	3	RAB3IP	12	70206599	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	20286782	70206599	63645296	68	12267											
GLT8D2	83468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104388181	104388181	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GLT8D2	NM_031302	exon9	c.C699G	p.A233A	CATGTTGGCAACA	.	130	18	132	0	.	92	C	104388181	G	C	104388181	2	2	97	1	0	0	0	0	0	0	0	1	6470	1335	47	4		4	GLT8D2	12	104388181	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	34181582	104388181	29463714	69	12268											
BTBD11	121551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108012091	108012091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BTBD11	NM_001018072	exon10	c.G2388T	p.R796S	CCTGAGGGAGGCC	.	83	12	86	0	.	93	T	108012091	G	T	108012091	3	4	97	1	0	0	0	0	1	0	0	0	1539	1223	43	3	2531	3	BTBD11	12	108012091	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	3623910	108012091	25839804	70	12269											
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59821978	59821978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DAAM1	NM_014992	exon20	c.C2482G	p.Q828E	AAAGGTCAAAGAG	.	63	12	109	0	.	227	G	59821978	C	G	59821978	3	3	97	1	0	0	0	0	1	0	0	0	4215	827	29	4	2560	4	DAAM1	14	59821978	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10		59821978	47527562	71	12270											
DHRS7	51635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	60631900	60631900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DHRS7	NM_016029	exon1	c.G128A	p.R43H	CCTGGGCGTCGTC	.	220	27	219	0	.	91	T	60631900	C	T	60631900	3	4	97	1	0	0	0	0	1	0	0	0	4495	768	27	1	919	1	DHRS7	14	60631900	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	809922	60631900	46717640	72	12271											
TSC2	7249	hgsc.bcm.edu;bcgsc.ca	37	16	2136306	2136311	+	In_Frame_Del	DEL	TGTACC	TGTACC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	TGTACC	TGTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TSC2	NM_000548	exon37	c.4775_4780del	p.1592_1594del	ACAAGGTGTACCT	.	158	20	241	0	.	1908	-	2136311	TGTACC	-	2136306	7	5	97	1	0	1	0	1	0	0	0	0	16603	1696	59	0	4917	0	TSC2	16	2136306	In_Frame_Del	DEL	TGTACC	TCGA-DD-A4NQ-01A-21D-A28X-10		2136306	88218447	73	12272											
SMG1	23049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	18853630	18853630	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SMG1	NM_015092	exon40	c.T6366C	p.H2122H	CACACTATGGATT	.	87	26	115	1	.	1160	G	18853630	A	G	18853630	2	3	97	1	0	0	0	0	0	0	0	1	14795	446	16	2		2	SMG1	16	18853630	Silent	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	16717324	18853630	71501123	74	12273											
PALB2	79728	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23646654	23646654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PALB2	NM_024675	exon4	c.C1213A	p.P405T	CTGCAGGAAACAG	.	25	5	36	0	.	1351	T	23646654	G	T	23646654	3	4	97	1	0	0	0	0	1	0	0	0	11406	1174	41	3	2387	3	PALB2	16	23646654	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	4793024	23646654	66708099	75	12274											
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57060281	57060281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NLRC5	NM_032206	exon5	c.T1426A	p.Y476N	ATCTTCTATGCAA	.	66	15	94	0	.	159	A	57060281	T	A	57060281	3	1	97	1	0	0	0	0	1	0	0	0	10470	1522	53	4	1440	4	NLRC5	16	57060281	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	33413627	57060281	33294472	76	12275											
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7187403	7187403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC2A4	NM_001042	exon5	c.G559T	p.A187S	CTGATCGCCCAGG	.	58	10	86	0	.	90	T	7187403	G	T	7187403	3	4	97	1	0	0	0	0	1	0	0	0	14546	1087	38	1	577	1	SLC2A4	17	7187403	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		7187403	74007807	77	12276											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7576633	7576633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TP53	NM_001126114	exon10	c.A1018G	p.N340D	AACAATTTTCTTT	.	42	16	109	0	.	70225	C	7576633	T	C	7576633	3	2	97	1	0	0	0	0	1	0	0	0	16378	1841	64	2	260	2	TP53	17	7576633	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	389230	7576633	73618577	78	12277											
ANKFN1	162282	broad.mit.edu;bcgsc.ca	37	17	54535232	54535232	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ANKFN1	NM_153228	exon13	c.T1458C	p.C486C	GTCTTGTATGTGG	.	53	4	88	0	.	136	C	54535232	T	C	54535232	2	2	97	1	0	0	0	0	0	0	0	1	625	1644	57	2		2	ANKFN1	17	54535232	Silent	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	46958599	54535232	26659978	79	12278											
DNAH17	8632	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76482177	76482177	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DNAH17	NM_173628	exon46	c.C7140A	p.I2380I	TTCGTTGATCCAC	.	43	5	82	0	.	142	T	76482177	G	T	76482177	2	4	97	1	0	0	0	0	0	0	0	1	4601	1280	45	3		3	DNAH17	17	76482177	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	21946945	76482177	4713033	80	12279											
NCLN	56926	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	3206308	3206308	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NCLN	NM_020170	exon12	c.C1384T	p.Q462X	ACCAACCAGCCGC	.	109	27	105	0	.	90	T	3206308	C	T	3206308	4	4	97	1	0	0	0	0	0	1	0	0	10227	595	21	3	1430	3	NCLN	19	3206308	Nonsense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10		3206308	55922675	81	12280											
C19orf10	56005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4664897	4664897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	C19orf10	NM_019107	exon3	c.C278A	p.T93N	CAGATGGTGCAGG	.	94	13	143	0	.	90	T	4664897	G	T	4664897	3	4	97	1	0	0	0	0	1	0	0	0	1908	1261	44	3	259	3	C19orf10	19	4664897	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	1458589	4664897	54464086	82	12281											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17943612	17943612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	JAK3	NM_000215	exon18	c.C2477T	p.S826L	AGCTGTGAGATGT	.	198	35	263	0	.	2418	A	17943612	G	A	17943612	3	1	97	1	0	0	0	0	1	0	0	0	7939	1294	45	3	925	3	JAK3	19	17943612	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	13278715	17943612	41185371	83	12282											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39071081	39071081	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RYR1	NM_000540	exon101	c.C14583T	p.R4861R	CTTCCGCAAGTTC	.	264	46	246	0	.	100	T	39071081	C	T	39071081	2	4	97	1	0	0	0	0	0	0	0	1	13768	697	25	3		3	RYR1	19	39071081	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	21127469	39071081	20057902	84	12283											
CD37	951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49841271	49841271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CD37	NM_001774	exon5	c.C432G	p.D144E	CTGGGACTATGTG	.	194	62	180	0	.	90	G	49841271	C	G	49841271	3	3	97	1	0	0	0	0	1	0	0	0	3008	564	20	4	450	4	CD37	19	49841271	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	10770190	49841271	9287712	85	12284											
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58862780	58862780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	A1BG	NM_130786	exon5	c.C887T	p.P296L	TCGACCGGCGCGC	.	96	27	68	0	.	90	A	58862780	G	A	58862780	3	1	97	1	0	0	0	0	1	0	0	0	1	1116	39	1	616	1	A1BG	19	58862780	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	9021509	58862780	266203	86	12285											
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18505223	18505223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SEC23B	NM_032985	exon5	c.G513C	p.R171S	TGGAAGGATGGTG	.	99	17	153	0	.	91	C	18505223	G	C	18505223	3	2	97	1	0	0	0	0	1	0	0	0	13992	1165	41	4	527	4	SEC23B	20	18505223	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		18505223	44520297	87	12286											
PYGB	5834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25261588	25261588	+	Missense_Mutation	SNP	G	G	A	rs201813153		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PYGB	NM_002862	exon11	c.G1243A	p.V415M	CAGCACGTGGCCG	.	169	24	173	0	.	91	A	25261588	G	A	25261588	3	1	97	1	0	0	0	0	1	0	0	0	12860	1145	40	1	1285	1	PYGB	20	25261588	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	6756365	25261588	37763932	88	12287											
CPNE1	8904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34220601	34220601	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CPNE1	NM_003915	exon3	c.G162T	p.R54R	CCGCACCCGTTCA	.	125	10	186	0	.	91	A	34220601	C	A	34220601	2	1	97	1	0	0	0	0	0	0	0	1	3811	610	22	3		3	CPNE1	20	34220601	Silent	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10	8959013	34220601	28804919	89	12288											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	50287714	50287714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ATP9A	NM_006045	exon12	c.C1120T	p.R374C	TGGAGCGAACCAC	.	100	7	123	0	.	94	A	50287714	G	A	50287714	3	1	97	1	0	0	0	0	1	0	0	0	1198	1058	37	1	2091	1	ATP9A	20	50287714	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	16067113	50287714	12737806	90	12289											
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58322830	58322830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PHACTR3	NM_080672	exon3	c.G298T	p.A100S	AAGATGGCCGGCA	.	103	15	183	0	.	93	T	58322830	G	T	58322830	3	4	97	1	0	0	0	0	1	0	0	0	11811	1203	42	3	308	3	PHACTR3	20	58322830	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	8035116	58322830	4702690	91	12290											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61978125	61978125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CHRNA4	NM_000744	exon6	c.C1849T	p.L617F	GGAAGAGGCCCAC	.	130	23	130	0	.	91	A	61978125	G	A	61978125	3	1	97	1	0	0	0	0	1	0	0	0	3385	1000	35	3	38	3	CHRNA4	20	61978125	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	3655295	61978125	1047395	92	12291											
USP16	10600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30419571	30419571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	USP16	NM_006447	exon14	c.G1940T	p.R647L	AACTTCGAGATGC	.	68	9	106	1	.	659	T	30419571	G	T	30419571	3	4	97	1	0	0	0	0	1	0	0	0	17044	1058	37	1	1990	1	USP16	21	30419571	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		30419571	17710324	93	12292											
RSPH1	89765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43896039	43896039	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RSPH1	NM_080860	exon8	c.C846T	p.D282D	CTCCTGGTCATAC	.	104	24	114	0	.	227	A	43896039	G	A	43896039	2	1	97	1	0	0	0	0	0	0	0	1	13702	1252	44	3		3	RSPH1	21	43896039	Silent	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10	13476468	43896039	4233856	94	12293											
THAP7	80764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21354333	21354333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	THAP7	NM_030573	exon4	c.C766T	p.R256C	GCTGGCGCTGGGC	.	122	23	92	0	.	278	A	21354333	G	A	21354333	3	1	97	1	0	0	0	0	1	0	0	0	15846	1087	38	1	167	1	THAP7	22	21354333	Missense_Mutation	SNP	G	TCGA-DD-A4NQ-01A-21D-A28X-10		21354333	29950233	95	12294											
H1F0	3005	hgsc.bcm.edu;broad.mit.edu	37	22	38201683	38201684	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	H1F0	NM_005318	exon1	c.132_133insT	p.G44fs	CGCTGGCTCCTCG	.	110	10	176	0	.	90	T	38201684	-	T	38201683	7	5	97	1	0	1	1	0	0	0	0	0	6920	784	28	0	134	0	H1F0	22	38201683	Frame_Shift_Ins	INS	-	TCGA-DD-A4NQ-01A-21D-A28X-10	16847350	38201683	13102883	96	12295											
MPPED1	758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43870736	43870736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001044370	exon4	c.T527A	p.L176Q	CGAAGCTGAAGCC	.	172	31	222	2	.	.	A	43870736	T	A	43870736	3	1	97	1	0	0	0	0	1	0	0	0	9741	1580	55	4	537	4	MPPED1	22	43870736	Missense_Mutation	SNP	T	TCGA-DD-A4NQ-01A-21D-A28X-10	5669053	43870736	7433830	97	12296											
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53655712	53655712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HUWE1	NM_031407	exon14	c.G1105A	p.A369T	TCATGGCCTGGAT	.	97	31	93	1	.	280	T	53655712	C	T	53655712	3	4	97	1	0	0	0	0	1	0	0	0	7461	739	26	3	12303	3	HUWE1	23	53655712	Missense_Mutation	SNP	C	TCGA-DD-A4NQ-01A-21D-A28X-10		53655712	101614848	98	12297											
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107681209	107681209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	COL4A6	NM_001847	exon2	c.T29A	p.L10Q	GTAACCAGGAGCA	.	226	64	268	0	.	199	T	107681209	A	T	107681209	3	4	97	1	0	0	0	0	1	0	0	0	3695	188	7	4	5222	4	COL4A6	23	107681209	Missense_Mutation	SNP	A	TCGA-DD-A4NQ-01A-21D-A28X-10	54025497	107681209	47589351	99	12298											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27101142	27101142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ARID1A	NM_006015	exon18	c.A4424C	p.N1475T	AGCAAAACATGCC	.	57	11	38	0	.	584	C	27101142	A	C	27101142	3	2	98	1	0	0	0	0	1	0	0	0	913	43	2	5	4494	5	ARID1A	1	27101142	Missense_Mutation	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10		27101142	222149479	1	12299											
DEPDC1	55635	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	68954709	68954709	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DEPDC1	NM_017779	exon4	c.C480T	p.G160G	TTTCTCGCCATTT	.	277	39	218	2	.	90	A	68954709	G	A	68954709	2	1	98	1	0	0	0	0	0	0	0	1	4439	1074	38	1		1	DEPDC1	1	68954709	Silent	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	41853567	68954709	180295912	2	12300											
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167849404	167849404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADCY10	NM_018417	exon11	c.G1165A	p.G389R	CAATCCCACTGGC	.	144	18	103	0	.	493	T	167849404	C	T	167849404	3	4	98	1	0	0	0	0	1	0	0	0	293	594	21	3	3759	3	ADCY10	1	167849404	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	98894695	167849404	81401217	3	12301											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176999968	176999968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ASTN1	NM_004319	exon4	c.G986A	p.R329K	CGCTTTCTCTGGC	.	84	15	79	0	.	319	T	176999968	C	T	176999968	3	4	98	1	0	0	0	0	1	0	0	0	1064	913	32	3	2982	3	ASTN1	1	176999968	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	9150564	176999968	72250653	4	12302											
SLC4A5	57835	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74482906	74482906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC4A5	NM_021196	exon8	c.A1021T	p.T341S	ACCTGGTGGGGAC	.	38	9	32	0	.	98	A	74482906	T	A	74482906	3	1	98	1	0	0	0	0	1	0	0	0	14657	1696	59	4	2468	4	SLC4A5	2	74482906	Missense_Mutation	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10		74482906	168716467	5	12303											
USP40	55230	broad.mit.edu;bcgsc.ca	37	2	234442314	234442314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	USP40	NM_018218	exon10	c.C1315A	p.Q439K	AAATTTGCTGGTC	.	79	5	101	0	.	455	T	234442314	G	T	234442314	3	4	98	1	0	0	0	0	1	0	0	0	17069	1328	46	3	2516	3	USP40	2	234442314	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	159959408	234442314	8757059	6	12304											
ACVR2B	93	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38519668	38519668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ACVR2B	NM_001106	exon4	c.T407C	p.L136P	CCCTGCTCACGGT	.	42	8	28	0	.	942	C	38519668	T	C	38519668	3	2	98	1	0	0	0	0	1	0	0	0	224	1551	54	2	421	2	ACVR2B	3	38519668	Missense_Mutation	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10		38519668	159502762	7	12305											
AADAC	13	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151545468	151545468	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AADAC	NM_001086	exon5	c.A708G	p.S236S	AAATTCAAATTTT	.	122	21	111	0	.	280	G	151545468	A	G	151545468	2	3	98	1	0	0	0	0	0	0	0	1	10	117	5	2		2	AADAC	3	151545468	Silent	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	113025800	151545468	46476962	8	12306											
YIPF7	285525	ucsc.edu;bcgsc.ca	37	4	44626734	44626734	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_182592	exon5	c.C564T	p.A188A	CAGCAAGGCATGA	.	217	48	166	2	.	.	A	44626734	G	A	44626734	2	1	98	1	0	0	0	0	0	0	0	1	17480	987	35	3		3	YIPF7	4	44626734	Silent	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		44626734	146527542	9	12307											
CDS1	1040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85540553	85540553	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CDS1	NM_001263	exon5	c.T447C	p.F149F	GTACTTTCTATTG	.	106	13	93	0	.	155	C	85540553	T	C	85540553	2	2	98	1	0	0	0	0	0	0	0	1	3177	1780	62	2		2	CDS1	4	85540553	Silent	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10	40913819	85540553	105613723	10	12308											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133997208	133997208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SEC24A	NM_001252231	exon2	c.G497T	p.S166I	ATACAAGTTTAAC	.	113	15	93	0	.	68	T	133997208	G	T	133997208	3	4	98	1	0	0	0	0	1	0	0	0	13994	1029	36	3	503	3	SEC24A	5	133997208	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		133997208	46918052	11	12309											
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140792839	140792839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_032090	exon1	c.C97T	p.R33W	GGAGCCCGGCAGA	.	81	17	64	0	.	.	T	140792839	C	T	140792839	3	4	98	1	0	0	0	0	1	0	0	0	11551	643	23	1	99	1	PCDHGA10	5	140792839	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	6795631	140792839	40122421	12	12310											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154311018	154311018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	GEMIN5	NM_015465	exon5	c.G781A	p.G261R	TCTTACCTCGGCC	.	91	27	53	0	.	228	T	154311018	C	T	154311018	3	4	98	1	0	0	0	0	1	0	0	0	6331	695	24	3	3841	3	GEMIN5	5	154311018	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	13518179	154311018	26604242	13	12311											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15452356	15452356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	JARID2	NM_004973	exon4	c.C443G	p.S148C	ACCTCTCTAAAAG	.	71	21	55	0	.	228	G	15452356	C	G	15452356	3	3	98	1	0	0	0	0	1	0	0	0	7945	913	32	4	457	4	JARID2	6	15452356	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10		15452356	155662711	14	12312											
RUNX2	860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	45390432	45390432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX2	NM_001024630	exon3	c.A161C	p.Q54P	AGCAACAGCAGCA	.	73	11	58	0	.	417	C	45390432	A	C	45390432	3	2	98	1	0	0	0	0	1	0	0	0	13748	188	7	5	183	5	RUNX2	6	45390432	Missense_Mutation	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	29938076	45390432	125724635	15	12313											
MED23	9439	broad.mit.edu;ucsc.edu	37	6	131924170	131924170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MED23	NM_015979	exon17	c.G1949A	p.C650Y	GCTCACCAAAGAT	.	89	16	71	1	.	24	T	131924170	C	T	131924170	3	4	98	1	0	0	0	0	1	0	0	0	9441	608	21	3	2238	3	MED23	6	131924170	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	86533738	131924170	39190897	16	12314											
EYA4	2070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133846297	133846297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EYA4	NM_004100	exon19	c.G1744A	p.E582K	GGAAAAGAAAGTT	.	254	45	175	1	.	578	A	133846297	G	A	133846297	3	1	98	1	0	0	0	0	1	0	0	0	5331	943	33	3	1919	3	EYA4	6	133846297	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	1922127	133846297	37268770	17	12315											
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34014331	34014331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	BMPER	NM_133468	exon7	c.G511A	p.V171M	GAGGGTGTGCAGT	.	129	14	127	0	.	92	A	34014331	G	A	34014331	3	1	98	1	0	0	0	0	1	0	0	0	1468	1377	48	3	533	3	BMPER	7	34014331	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		34014331	125124332	18	12316											
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105121549	105121549	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PUS7	NM_019042	exon9	c.T1125C	p.Y375Y	CATTCCATAGTAG	.	122	24	98	0	.	90	G	105121549	A	G	105121549	2	3	98	1	0	0	0	0	0	0	0	1	12833	224	8	2		2	PUS7	7	105121549	Silent	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	71107218	105121549	54017114	19	12317											
CTTNBP2	83992	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117398014	117398014	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CTTNBP2	NM_033427	exon11	c.G3183A	p.P1061P	TGACCACGGCACA	.	44	5	39	0	.	94	T	117398014	C	T	117398014	2	4	98	1	0	0	0	0	0	0	0	1	4045	523	19	1		1	CTTNBP2	7	117398014	Silent	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	12276465	117398014	41740649	20	12318											
XKR6	286046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10782237	10782237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	XKR6	NM_173683	exon2	c.C868A	p.L290M	GGCGCAGCATGTT	.	44	10	27	0	.	92	T	10782237	G	T	10782237	3	4	98	1	0	0	0	0	1	0	0	0	17432	962	34	3	1065	3	XKR6	8	10782237	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		10782237	135581785	21	12319											
RUNX1T1	862	ucsc.edu;mdanderson.org	37	8	92998419	92998419	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX1T1	NM_001198679	exon9	c.A1389G	p.K463K	GCCACCTTTTTTT	.	82	11	93	2	.	1196	C	92998419	T	C	92998419	2	2	98	1	0	0	0	0	0	0	0	1	13747	1606	56	2		2	RUNX1T1	8	92998419	Silent	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10	82216182	92998419	53365603	22	12320											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	114031312	114031312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CSMD3	NM_052900	exon6	c.T1014C	p.F338F	AGCACTAAATCCA	.	97	6	63	0	.	1132	G	114031312	A	G	114031312	2	3	98	1	0	0	0	0	0	0	0	1	3946	359	13	2		2	CSMD3	8	114031312	Silent	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	21032893	114031312	32332710	23	12321											
OR2AG2	338755	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6789560	6789560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OR2AG2	NM_001004490	exon1	c.C629T	p.P210L	GAAATGGGGAGCA	.	59	7	65	1	.	71	A	6789560	G	A	6789560	3	1	98	1	0	0	0	0	1	0	0	0	10985	1232	43	3	325	3	OR2AG2	11	6789560	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		6789560	128216956	24	12322											
WEE1	7465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9597784	9597784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	WEE1	NM_003390	exon3	c.G790A	p.G264S	TCCTGTGGTGAAG	.	149	21	143	0	.	1404	A	9597784	G	A	9597784	3	1	98	1	0	0	0	0	1	0	0	0	17341	1348	47	3	800	3	WEE1	11	9597784	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	2808224	9597784	125408732	25	12323											
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62782428	62782428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC22A8	NM_001184732	exon2	c.G3A	p.M1I	GAAGGTCATGGCA	.	39	11	28	0	.	93	T	62782428	C	T	62782428	3	4	98	1	0	0	0	0	1	0	0	0	14460	826	29	3	1665	3	SLC22A8	11	62782428	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	53184644	62782428	72224088	26	12324											
PITPNM1	9600	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	67261260	67261260	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PITPNM1	NM_004910	exon21	c.C3057A	p.G1019G	CTCCGTGCCGCGG	.	59	9	58	0	.	227	T	67261260	G	T	67261260	2	4	98	1	0	0	0	0	0	0	0	1	11950	1306	46	3		3	PITPNM1	11	67261260	Silent	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	4478832	67261260	67745256	27	12325											
KCTD21	283219	broad.mit.edu;mdanderson.org	37	11	77885144	77885144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KCTD21	NM_001029859	exon2	c.T457G	p.C153G	AGAGGCAGGAGGT	.	37	8	44	2	.	69	C	77885144	A	C	77885144	3	2	98	1	0	0	0	0	1	0	0	0	8109	188	7	5	329	5	KCTD21	11	77885144	Missense_Mutation	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	10623884	77885144	57121372	28	12326											
CHD4	1108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6690892	6690892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CHD4	NM_001273	exon31	c.C4604T	p.S1535L	GAGGGTGACCCTG	.	116	23	71	1	.	228	A	6690892	G	A	6690892	3	1	98	1	0	0	0	0	1	0	0	0	3327	1294	45	3	1174	3	CHD4	12	6690892	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		6690892	127161003	29	12327											
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	29598311	29598311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OVCH1	NM_183378	exon23	c.C2781A	p.Y927X	CATTGAGTAAAGT	.	91	14	55	0	.	210	T	29598311	G	T	29598311	4	4	98	1	0	0	0	0	0	1	0	0	11323	1024	36	3	647	3	OVCH1	12	29598311	Nonsense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	22907419	29598311	104253584	30	12328											
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53722106	53722106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_152860	exon2	c.C1120T	p.R374C	GGGTGCGCTGGTG	.	45	18	39	0	.	.	A	53722106	G	A	53722106	3	1	98	1	0	0	0	0	1	0	0	0	14969	1087	38	1	179	1	SP7	12	53722106	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	24123795	53722106	80129789	31	12329											
IL23A	51561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56733526	56733526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	IL23A	NM_016584	exon3	c.G313C	p.G105R	CTGCTAGGATCGG	.	56	18	57	1	.	90	C	56733526	G	C	56733526	3	2	98	1	0	0	0	0	1	0	0	0	7675	1001	35	4	323	4	IL23A	12	56733526	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	3011420	56733526	77118369	32	12330											
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102076403	102076403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYBPC1	NM_002465	exon30	c.C3455T	p.T1152I	TAAATACCCCTGG	.	144	31	99	0	.	94	T	102076403	C	T	102076403	3	4	98	1	0	0	0	0	1	0	0	0	10011	507	18	3	3631	3	MYBPC1	12	102076403	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	45342877	102076403	31775492	33	12331											
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65241980	65241980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPTB	NM_001024858	exon22	c.C4705T	p.L1569L	CCCGCAGCCTGTC	.	45	9	35	0	.	100	A	65241980	G	A	65241980	2	1	98	1	0	0	0	0	0	0	0	1	15117	962	34	3		3	SPTB	14	65241980	Silent	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		65241980	42107560	34	12332											
ZNF839	55778	broad.mit.edu;ucsc.edu	37	14	102807765	102807765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF839	NM_018335	exon8	c.T2033G	p.L678R	CGCAGCTTCAGGC	.	86	15	66	1	.	91	G	102807765	T	G	102807765	3	3	98	1	0	0	0	0	1	0	0	0	18185	1609	56	5	2063	5	ZNF839	14	102807765	Missense_Mutation	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10	37565785	102807765	4541775	35	12333											
RPAP1	26015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41816168	41816168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RPAP1	NM_015540	exon17	c.A2237G	p.D746G	GCAGAATCACTAC	.	59	8	44	0	.	153	C	41816168	T	C	41816168	3	2	98	1	0	0	0	0	1	0	0	0	13541	1435	50	2	1980	2	RPAP1	15	41816168	Missense_Mutation	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10		41816168	60715224	36	12334											
SALL1	6299	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	51173574	51173574	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SALL1	NM_002968	exon2	c.T2559G	p.S853S	AGGCGAAGAGGAT	.	69	10	76	1	.	98	C	51173574	A	C	51173574	2	2	98	1	0	0	0	0	0	0	0	1	13810	59	3	5		5	SALL1	16	51173574	Silent	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10		51173574	39181179	37	12335											
SPG7	6687	hgsc.bcm.edu;mdanderson.org	37	16	89574985	89574985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPG7	NM_199367	exon1	c.G160A	p.E54K	CTCGCCGAGGCTG	.	34	6	16	0	.	226	A	89574985	G	A	89574985	3	1	98	1	0	0	0	0	1	0	0	0	15043	1059	37	1	162	1	SPG7	16	89574985	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	38401411	89574985	779768	38	12336											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10395803	10395803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYH1	NM_005963	exon40	c.C5750T	p.A1917V	GACTCAGCAATGT	.	124	20	75	0	.	171	A	10395803	G	A	10395803	3	1	98	1	0	0	0	0	1	0	0	0	10029	971	34	3	73	3	MYH1	17	10395803	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10		10395803	70799407	39	12337											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79100253	79100253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AATK	NM_001080395	exon7	c.C729A	p.H243Q	ATGAAGGTGCAGG	.	90	14	68	0	.	933	T	79100253	G	T	79100253	3	4	98	1	0	0	0	0	1	0	0	0	26	1252	44	3	3427	3	AATK	17	79100253	Missense_Mutation	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	68704450	79100253	2094957	40	12338											
FBXO15	201456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	71749184	71749184	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FBXO15	NM_001142958	exon9	c.A1241T	p.D414V	AAAATATCAGTTT	.	236	31	194	1	.	229	A	71749184	T	A	71749184	3	1	98	1	0	0	0	0	1	0	0	0	5728	1435	50	4	299	4	FBXO15	18	71749184	Missense_Mutation	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10		71749184	6328064	41	12339											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610300	10610300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KEAP1	NM_012289	exon2	c.T410C	p.I137T	AATTCAATGAGGC	.	53	5	41	0	.	637	G	10610300	A	G	10610300	3	3	98	1	0	0	0	0	1	0	0	0	8141	101	4	2	1484	2	KEAP1	19	10610300	Missense_Mutation	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10		10610300	48518683	42	12340											
EPS15L1	58513	broad.mit.edu;mdanderson.org	37	19	16545246	16545246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EPS15L1	NM_021235	exon7	c.G428T	p.G143V	AGCAAACCATTGA	.	73	9	56	1	.	95	A	16545246	C	A	16545246	3	1	98	1	0	0	0	0	1	0	0	0	5193	507	18	3	2234	3	EPS15L1	19	16545246	Missense_Mutation	SNP	C	TCGA-DD-A4NR-01A-11D-A30V-10	5934946	16545246	42583737	43	12341											
DPF1	8193	broad.mit.edu;mdanderson.org	37	19	38713010	38713010	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DPF1	NM_001135155	exon3	c.C366T	p.C122C	GTACTCGCAGGGC	.	77	13	45	1	.	90	A	38713010	G	A	38713010	2	1	98	1	0	0	0	0	0	0	0	1	4716	1079	38	1		1	DPF1	19	38713010	Silent	SNP	G	TCGA-DD-A4NR-01A-11D-A30V-10	22167764	38713010	20415973	44	12342											
TST	7263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37414605	37414605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TST	NM_003312	exon2	c.T169C	p.S57P	AGAAAGAGGCGCC	.	40	4	41	0	.	90	G	37414605	A	G	37414605	3	3	98	1	0	0	0	0	1	0	0	0	16670	304	11	2	732	2	TST	22	37414605	Missense_Mutation	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10		37414605	13889961	45	12343											
ADSL	158	hgsc.bcm.edu;mdanderson.org	37	22	40742563	40742563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADSL	NM_001123378	exon1	c.A1G	p.M1V	GTTGGGATGGCGG	.	27	7	9	0	.	652	G	40742563	A	G	40742563	3	3	98	1	0	0	0	0	1	0	0	0	346	333	12	2	3	2	ADSL	22	40742563	Missense_Mutation	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	3327958	40742563	10562003	46	12344											
ZNF630	57232	broad.mit.edu;bcgsc.ca	37	X	47919574	47919574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF630	NM_001037735	exon5	c.A257T	p.E86V	GAAGATTCAAGGC	.	78	16	78	2	.	131	A	47919574	T	A	47919574	3	1	98	1	0	0	0	0	1	0	0	0	18051	1783	62	4	1720	4	ZNF630	23	47919574	Missense_Mutation	SNP	T	TCGA-DD-A4NR-01A-11D-A30V-10		47919574	107350986	47	12345											
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	49853423	49853444	+	Frame_Shift_Del	DEL	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CLCN5	NM_001127898	exon12	c.1626_1647del	p.542_549del	AGTAGGAATGGAA	.	93	10	123	0	.	132	-	49853444	AATGGAACAGCTGGCTTATTAC	-	49853423	7	5	98	1	0	1	0	1	0	0	0	0	3466	233	9	0	1664	0	CLCN5	23	49853423	Frame_Shift_Del	DEL	AATGGAACAGCTGGCTTATTAC	TCGA-DD-A4NR-01A-11D-A30V-10	1933849	49853423	105417137	48	12346											
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73960186	73960186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KIAA2022	NM_001008537	exon3	c.T4206C	p.N1402N	TTTCCCATTGCTT	.	76	14	39	0	.	183	G	73960186	A	G	73960186	2	3	98	1	0	0	0	0	0	0	0	1	8269	214	8	2		2	KIAA2022	23	73960186	Silent	SNP	A	TCGA-DD-A4NR-01A-11D-A30V-10	24106763	73960186	81310374	49	12347											
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	22838185	22838185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZBTB40	NM_001083621	exon12	c.A2019C	p.E673D	TAAGGAAGATGGA	.	209	18	175	0	.	91	C	22838185	A	C	22838185	3	2	99	1	0	0	0	0	1	0	0	0	17539	69	3	5	2057	5	ZBTB40	1	22838185	Missense_Mutation	SNP	A	TCGA-DD-A4NS-01A-11D-A30V-10		22838185	226412436	1	12348											
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38227457	38227457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	EPHA10	NM_001099439	exon3	c.C470T	p.A157V	TCGTCCGCCGCGA	.	74	8	80	0	.	1246	A	38227457	G	A	38227457	3	1	99	1	0	0	0	0	1	0	0	0	5166	1087	38	1	2654	1	EPHA10	1	38227457	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	15389272	38227457	211023164	2	12349											
DMAP1	55929	broad.mit.edu;ucsc.edu	37	1	44684852	44684852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	DMAP1	NM_001034023	exon7	c.G845A	p.R282Q	AGCAGCGGCGCAC	.	79	5	60	1	.	226	A	44684852	G	A	44684852	3	1	99	1	0	0	0	0	1	0	0	0	4576	1116	39	1	867	1	DMAP1	1	44684852	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	6457395	44684852	204565769	3	12350											
CD46	4179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207934716	207934716	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CD46	NM_172352	exon5	c.598delT	p.F200fs	GATCCATTTTCAC	.	132	22	117	0	.	963	-	207934716	T	-	207934716	7	5	99	1	0	1	0	1	0	0	0	0	3018	1493	52	0	616	0	CD46	1	207934716	Frame_Shift_Del	DEL	T	TCGA-DD-A4NS-01A-11D-A30V-10	163249864	207934716	41315905	4	12351											
PCNXL2	80003	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233394746	233394746	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PCNXL2	NM_014801	exon5	c.G862C	p.V288L	AACTGACAGGTTC	.	91	15	74	1	.	91	G	233394746	C	G	233394746	3	3	99	1	0	0	0	0	1	0	0	0	11592	478	17	4	5671	4	PCNXL2	1	233394746	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	25460030	233394746	15855875	5	12352											
OR2W5	441932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247655366	247655366	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	OR2W5	NM_001004698	exon1	c.G937T	p.G313X	GGCTGGGGAGCCT	.	81	6	74	0	.	115	T	247655366	G	T	247655366	4	4	99	1	0	0	0	0	0	1	0	0	11034	1233	43	3	939	3	OR2W5	1	247655366	Nonsense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	14260620	247655366	1595255	6	12353											
APOB	338	hgsc.bcm.edu;broad.mit.edu	37	2	21233945	21233945	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	APOB	NM_000384	exon26	c.5795delT	p.L1932fs	TTCAACAGGAATT	.	154	13	147	0	.	175	-	21233945	A	-	21233945	7	5	99	1	0	1	0	1	0	0	0	0	785	188	7	0	7912	0	APOB	2	21233945	Frame_Shift_Del	DEL	A	TCGA-DD-A4NS-01A-11D-A30V-10		21233945	221965428	7	12354											
CD8B	926	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	87073896	87073896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CD8B	NM_004931	exon4	c.G494A	p.G165D	AGTGGGCCTGGAA	.	475	39	476	0	.	92	T	87073896	C	T	87073896	3	4	99	1	0	0	0	0	1	0	0	0	3045	753	26	3	424	3	CD8B	2	87073896	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	65839951	87073896	156125477	8	12355											
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136872511	136872511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CXCR4	NM_001008540	exon1	c.C999T	p.L333L	TTTGGAGAGGATC	.	218	24	176	0	.	1082	A	136872511	G	A	136872511	2	1	99	1	0	0	0	0	0	0	0	1	4093	929	33	3		3	CXCR4	2	136872511	Silent	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	49798615	136872511	106326862	9	12356											
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	160310259	160310259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	BAZ2B	NM_013450	exon4	c.A199C	p.S67R	AGGCACTCGACAC	.	124	10	107	0	.	94	G	160310259	T	G	160310259	3	3	99	1	0	0	0	0	1	0	0	0	1332	1551	54	5	6443	5	BAZ2B	2	160310259	Missense_Mutation	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10	23437748	160310259	82889114	10	12357											
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	165947139	165947139	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SCN3A	NM_006922	exon28	c.G5524C	p.V1842L	CACTGACCATGGG	.	269	22	229	0	.	141	G	165947139	C	G	165947139	3	3	99	1	0	0	0	0	1	0	0	0	13918	507	18	4	482	4	SCN3A	2	165947139	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	5636880	165947139	77252234	11	12358											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179584040	179584040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	TTN	NM_001267550	exon83	c.T24077C	p.V8026A	CCACTAACAATCT	.	110	7	100	0	.	636	G	179584040	A	G	179584040	3	3	99	1	0	0	0	0	1	0	0	0	16732	43	2	2	80572	2	TTN	2	179584040	Missense_Mutation	SNP	A	TCGA-DD-A4NS-01A-11D-A30V-10	13636901	179584040	63615333	12	12359											
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179997118	179997118	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SESTD1	NM_178123	exon10	c.A885G	p.Q295Q	TCTTAGTTGTTCT	.	98	5	74	0	.	228	C	179997118	T	C	179997118	2	2	99	1	0	0	0	0	0	0	0	1	14127	1722	60	2		2	SESTD1	2	179997118	Silent	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10	413078	179997118	63202255	13	12360											
OXTR	5021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	8809008	8809008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	OXTR	NM_000916	exon3	c.C866T	p.T289M	AAAGGCGTCCAGC	.	119	9	85	0	.	68	A	8809008	G	A	8809008	3	1	99	1	0	0	0	0	1	0	0	0	11338	1145	40	1	311	1	OXTR	3	8809008	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10		8809008	189213422	14	12361											
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42738590	42738590	+	Missense_Mutation	SNP	C	C	T	rs202043526		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	HHATL	NM_020707	exon8	c.G913A	p.V305I	AGAGGACGGCCGC	.	123	7	119	0	C|1.000;T|0.000	93	T	42738590	C	T	42738590	3	4	99	1	0	0	0	0	1	0	0	0	7090	536	19	1	621	1	HHATL	3	42738590	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	33929582	42738590	155283840	15	12362											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	57488148	57488148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	DNAH12	NM_198564	exon10	c.C1145A	p.T382K	AGTTCTGTGTCAA	.	155	12	129	0	.	47	T	57488148	G	T	57488148	3	4	99	1	0	0	0	0	1	0	0	0	4600	1377	48	3	8376	3	DNAH12	3	57488148	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	14749558	57488148	140534282	16	12363											
TKTL2	84076	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	164393857	164393857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	TKTL2	NM_032136	exon1	c.G1030T	p.G344C	TGTCACCACTCAG	.	126	10	91	1	.	95	A	164393857	C	A	164393857	3	1	99	1	0	0	0	0	1	0	0	0	15933	594	21	3	854	3	TKTL2	4	164393857	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10		164393857	26760419	17	12364											
C5orf51	285636	broad.mit.edu;bcgsc.ca	37	5	41904516	41904516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	C5orf51	NM_175921	exon1	c.G47A	p.G16E	AGCTCGGGGATCT	.	130	8	117	1	.	68	A	41904516	G	A	41904516	3	1	99	1	0	0	0	0	1	0	0	0	2308	1232	43	3	49	3	C5orf51	5	41904516	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10		41904516	139010744	18	12365											
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140799054	140799054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PCDHGB7	NM_018927	exon1	c.G1628T	p.S543I	CGCTCAGCGCCAA	.	92	8	85	0	.	29	T	140799054	G	T	140799054	3	4	99	1	0	0	0	0	1	0	0	0	11568	971	34	3	1630	3	PCDHGB7	5	140799054	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	98894538	140799054	40116206	19	12366											
ZNF300	91975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150275398	150275398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZNF300	NM_001172831	exon7	c.C1451A	p.T484N	CATTCAGTACATT	.	95	5	73	0	.	92	T	150275398	G	T	150275398	3	4	99	1	0	0	0	0	1	0	0	0	17828	1029	36	3	415	3	ZNF300	5	150275398	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	9476344	150275398	30639862	20	12367											
GFPT2	9945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179780211	179780211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GFPT2	NM_005110	exon1	c.G7A	p.G3R	ACTCACCGCACAT	.	70	7	55	0	.	92	T	179780211	C	T	179780211	3	4	99	1	0	0	0	0	1	0	0	0	6346	666	23	1	2117	1	GFPT2	5	179780211	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	29504813	179780211	1135049	21	12368											
GRM4	2914	broad.mit.edu;bcgsc.ca	37	6	34003577	34003577	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GRM4	NM_000841	exon9	c.T2310C	p.Y770Y	GATGGCATACACG	.	173	11	102	1	.	525	G	34003577	A	G	34003577	2	3	99	1	0	0	0	0	0	0	0	1	6799	224	8	2		2	GRM4	6	34003577	Silent	SNP	A	TCGA-DD-A4NS-01A-11D-A30V-10		34003577	137111490	22	12369											
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122774465	122774465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SLC13A1	NM_022444	exon8	c.A931T	p.N311Y	CTTACTTGAATCC	.	116	8	90	0	.	92	A	122774465	T	A	122774465	3	1	99	1	0	0	0	0	1	0	0	0	14391	1826	63	4	888	4	SLC13A1	7	122774465	Missense_Mutation	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10		122774465	36364198	23	12370											
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu	37	7	138768681	138768681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZC3HAV1	NM_024625	exon3	c.A542G	p.N181S	CGACAGTTCCCTC	.	94	4	74	0	.	91	C	138768681	T	C	138768681	3	2	99	1	0	0	0	0	1	0	0	0	17572	1725	60	2	2214	2	ZC3HAV1	7	138768681	Missense_Mutation	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10	15994216	138768681	20369982	24	12371											
SSPO	23145	broad.mit.edu;ucsc.edu	37	7	149520825	149520825	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	.	NM_198455	exon93	c.C13402T	p.Q4468X	CTGGAGCAGGCTG	.	52	6	63	0	.	.	T	149520825	C	T	149520825	4	4	99	1	0	0	0	0	0	1	0	0	15188	711	25	3	13766	3	SSPO	7	149520825	Nonsense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	10752144	149520825	9617838	25	12372											
ZNF517	340385	broad.mit.edu;mdanderson.org	37	8	146033060	146033060	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZNF517	NM_213605	exon5	c.C759T	p.R253R	CCACCGCGTCCAC	.	40	6	28	0	.	90	T	146033060	C	T	146033060	2	4	99	1	0	0	0	0	0	0	0	1	17958	755	27	1		1	ZNF517	8	146033060	Silent	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10		146033060	330962	26	12373											
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21334572	21334572	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KLHL9	NM_018847	exon1	c.A287C	p.H96P	ACCCCATGAAGCT	.	193	14	197	0	.	94	G	21334572	T	G	21334572	3	3	99	1	0	0	0	0	1	0	0	0	8396	1464	51	5	1570	5	KLHL9	9	21334572	Missense_Mutation	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10		21334572	119878859	27	12374											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	113192621	113192621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SVEP1	NM_153366	exon33	c.G5463T	p.L1821F	TCCCATCAACTGG	.	163	12	120	0	.	75	A	113192621	C	A	113192621	3	1	99	1	0	0	0	0	1	0	0	0	15417	825	29	3	5316	3	SVEP1	9	113192621	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	91858049	113192621	28020810	28	12375											
MED27	9442	hgsc.bcm.edu;broad.mit.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	MED27	NM_004269	exon8	c.C881T	p.P294L	CATGTCGGGGGAA	.	102	7	87	0	.	69	A	134735980	G	A	134735980	3	1	99	1	0	0	0	0	1	0	0	0	9445	1116	39	1	58	1	MED27	9	134735980	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	21543359	134735980	6477451	29	12376											
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101823465	101823465	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CPN1	NM_001308	exon5	c.C777A	p.S259S	TGCATAGGAGTAG	.	80	10	53	0	.	227	T	101823465	G	T	101823465	2	4	99	1	0	0	0	0	0	0	0	1	3809	987	35	3		3	CPN1	10	101823465	Silent	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10		101823465	33711282	30	12377											
LHPP	64077	broad.mit.edu;bcgsc.ca	37	10	126150438	126150438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	LHPP	NM_022126	exon1	c.C7T	p.P3S	ATGGCACCGTGGG	.	85	6	79	0	.	90	T	126150438	C	T	126150438	3	4	99	1	0	0	0	0	1	0	0	0	8769	507	18	3	9	3	LHPP	10	126150438	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	24326973	126150438	9384309	31	12378											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1080902	1080902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	MUC2	NM_002457	exon10	c.T1286A	p.L429Q	CTCTCCTGGGCGA	.	95	7	65	0	.	90	A	1080902	T	A	1080902	3	1	99	1	0	0	0	0	1	0	0	0	9975	1580	55	4	1324	4	MUC2	11	1080902	Missense_Mutation	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10		1080902	133925614	32	12379											
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869689	4869689	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	OR51S1	NM_001004758	exon1	c.C750A	p.A250A	GAGGTGGGCAGCA	.	124	13	101	0	.	72	T	4869689	G	T	4869689	2	4	99	1	0	0	0	0	0	0	0	1	11105	1219	43	3		3	OR51S1	11	4869689	Silent	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	3788787	4869689	130136827	33	12380											
CCDC88B	283234	broad.mit.edu;bcgsc.ca	37	11	64111617	64111617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CCDC88B	NM_032251	exon14	c.C1604T	p.P535L	CTCCCCCGGCATT	.	64	4	62	0	.	94	T	64111617	C	T	64111617	3	4	99	1	0	0	0	0	1	0	0	0	2864	652	23	1	1658	1	CCDC88B	11	64111617	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	59241928	64111617	70894899	34	12381											
CARD16	114769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104912234	104912234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CARD16	NM_001017534	exon3	c.C487T	p.R163W	AGAACCGCTCAAT	.	120	12	113	1	.	228	A	104912234	G	A	104912234	3	1	99	1	0	0	0	0	1	0	0	0	2647	1086	38	1	110	1	CARD16	11	104912234	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	40800617	104912234	30094282	35	12382											
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1949905	1949905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CACNA2D4	NM_172364	exon26	c.G2551A	p.A851T	TCCTACCTGCAGC	.	21	6	37	0	.	23	T	1949905	C	T	1949905	3	4	99	1	0	0	0	0	1	0	0	0	2551	695	24	3	914	3	CACNA2D4	12	1949905	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10		1949905	131901990	36	12383											
KRT73	319101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53007536	53007536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KRT73	NM_175068	exon5	c.G920A	p.R307H	TGGGCACGGACCT	.	93	6	77	0	.	157	T	53007536	C	T	53007536	3	4	99	1	0	0	0	0	1	0	0	0	8486	536	19	1	722	1	KRT73	12	53007536	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	51057631	53007536	80844359	37	12384											
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	118198839	118198839	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KSR2	NM_173598	exon4	c.C876T	p.R292R	GTCCACGCGGTGC	.	104	7	99	0	.	1449	A	118198839	G	A	118198839	2	1	99	1	0	0	0	0	0	0	0	1	8582	1074	38	1		1	KSR2	12	118198839	Silent	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	65191303	118198839	15653056	38	12385											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	39264479	39264479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	FREM2	NM_207361	exon1	c.C2998G	p.P1000A	GGCATTCCAGCAG	.	148	13	147	0	.	100	G	39264479	C	G	39264479	3	3	99	1	0	0	0	0	1	0	0	0	6045	855	30	4	3000	4	FREM2	13	39264479	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10		39264479	75905399	39	12386											
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	53098899	53098899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GPR137C	NM_001099652	exon4	c.G739A	p.V247I	CAGACTGTCGTCG	.	146	12	150	0	.	68	A	53098899	G	A	53098899	3	1	99	1	0	0	0	0	1	0	0	0	6647	1377	48	3	753	3	GPR137C	14	53098899	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10		53098899	54250641	40	12387											
DMXL2	23312	broad.mit.edu;ucsc.edu	37	15	51868294	51868294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	DMXL2	NM_001174117	exon2	c.A172G	p.I58V	CTTGGATGTTTCC	.	40	4	37	0	.	99	C	51868294	T	C	51868294	3	2	99	1	0	0	0	0	1	0	0	0	4595	1464	51	2	9109	2	DMXL2	15	51868294	Missense_Mutation	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10		51868294	50663098	41	12388											
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52342240	52342240	+	Silent	SNP	T	T	G	rs41480651		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	MAPK6	NM_002748	exon3	c.T606G	p.L202L	ACGTCTTTTACTT	.	115	6	118	0	T|1.000;|0.000	1403	G	52342240	T	G	52342240	2	3	99	1	0	0	0	0	0	0	0	1	9281	1828	64	5		5	MAPK6	15	52342240	Silent	SNP	T	TCGA-DD-A4NS-01A-11D-A30V-10	473946	52342240	50189152	42	12389											
POLG	5428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	89866679	89866679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	POLG	NM_002693	exon13	c.G2221T	p.D741Y	CCACGTCGTTGTA	.	100	4	98	0	.	228	A	89866679	C	A	89866679	3	1	99	1	0	0	0	0	1	0	0	0	12200	884	31	1	1542	1	POLG	15	89866679	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	37524439	89866679	12664713	43	12390											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	29592318	29592318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	NF1	NM_001042492	exon36	c.C4796A	p.S1599Y	GGACTTCCAAAGC	.	303	19	268	0	.	3353	A	29592318	C	A	29592318	3	1	99	1	0	0	0	0	1	0	0	0	10356	855	30	3	4999	3	NF1	17	29592318	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10		29592318	51602892	44	12391											
ACACA	31	hgsc.bcm.edu;broad.mit.edu	37	17	35580444	35580444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ACACA	NM_198834	exon28	c.G3553A	p.A1185T	GAGCTGCCATCCT	.	84	4	76	0	.	154	T	35580444	C	T	35580444	3	4	99	1	0	0	0	0	1	0	0	0	106	739	26	3	3714	3	ACACA	17	35580444	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	5988126	35580444	45614766	45	12392											
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40689487	40689487	+	Missense_Mutation	SNP	G	G	A	rs141018386		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	NAGLU	NM_000263	exon2	c.G455A	p.R152Q	GGGAGCGAGAGAT	.	84	10	70	0	G|1.000;A|0.000	90	A	40689487	G	A	40689487	3	1	99	1	0	0	0	0	1	0	0	0	10143	1058	37	1	461	1	NAGLU	17	40689487	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	5109043	40689487	40505723	46	12393											
PRKCA	5578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	64800042	64800042	+	Missense_Mutation	SNP	G	G	A	rs141376042	byfrequency	TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PRKCA	NM_002737	exon17	c.G1906A	p.V636I	CAGCCCGTCTTAA	.	72	7	95	0	G|0.998;A|0.002	1404	A	64800042	G	A	64800042	3	1	99	1	0	0	0	0	1	0	0	0	12507	1145	40	1	1972	1	PRKCA	17	64800042	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	24110555	64800042	16395168	47	12394											
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7615936	7615936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PNPLA6	NM_001166111	exon19	c.G2154A	p.T718T	CGACACGGAGCTG	.	62	7	47	0	.	47	A	7615936	G	A	7615936	2	1	99	1	0	0	0	0	0	0	0	1	12169	1103	39	1		1	PNPLA6	19	7615936	Silent	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10		7615936	51513047	48	12395											
PRKACA	5566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14208612	14208612	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PRKACA	NM_002730	exon6	c.G510A	p.P170P	ATTCTCCGGCTTC	.	100	10	100	1	.	978	T	14208612	C	T	14208612	2	4	99	1	0	0	0	0	0	0	0	1	12497	639	23	1		1	PRKACA	19	14208612	Silent	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	6592676	14208612	44920371	49	12396											
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21216304	21216304	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZNF430	NM_025189	exon3	c.G139T	p.E47X	TCTCTGGAGGAGT	.	176	19	148	0	.	516	T	21216304	G	T	21216304	4	4	99	1	0	0	0	0	0	1	0	0	17901	1175	41	3	149	3	ZNF430	19	21216304	Nonsense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	7007692	21216304	37912679	50	12397											
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56042689	56042689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SBK2	NM_001101401	exon3	c.C277A	p.L93I	TCGGGAGCTGCTT	.	26	4	32	0	.	68	T	56042689	G	T	56042689	3	4	99	1	0	0	0	0	1	0	0	0	13861	971	34	3	776	3	SBK2	19	56042689	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	34826385	56042689	3086294	51	12398											
AURKA	6790	broad.mit.edu;bcgsc.ca	37	20	54958068	54958068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	AURKA	NM_198437	exon5	c.G539A	p.R180K	ACTTCTCTTCTGA	.	93	7	80	0	.	1601	T	54958068	C	T	54958068	3	4	99	1	0	0	0	0	1	0	0	0	1221	913	32	3	692	3	AURKA	20	54958068	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10		54958068	8067452	52	12399											
APOL4	80832	broad.mit.edu;bcgsc.ca	37	22	36587462	36587462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	APOL4	.	.	.	.	TTTTGTGGCTTCG	.	88	5	75	0	.	90	A	36587462	G	A	36587462	2	1	99	1	0	0	0	0	0	0	0	1	808	1348	47	3		3	APOL4	22	36587462	Silent	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10		36587462	14717104	53	12400											
NPTXR	23467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39222683	39222683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	NPTXR	NM_014293	exon3	c.C920A	p.A307D	ACGCGGGCGTACA	.	88	13	68	0	.	92	T	39222683	G	T	39222683	3	4	99	1	0	0	0	0	1	0	0	0	10604	1203	42	3	594	3	NPTXR	22	39222683	Missense_Mutation	SNP	G	TCGA-DD-A4NS-01A-11D-A30V-10	2635221	39222683	12081883	54	12401											
SYNGR1	9145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	39746105	39746105	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SYNGR1	NM_145731	exon1	c.C90A	p.V30V	GCGCGTCGTGTCT	.	56	5	49	0	.	90	A	39746105	C	A	39746105	2	1	99	1	0	0	0	0	0	0	0	1	15445	871	31	1		1	SYNGR1	22	39746105	Silent	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	523422	39746105	11558461	55	12402											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118250523	118250523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KIAA1210	NM_020721	exon4	c.T586C	p.S196P	TGCTGGACAAGCT	.	152	13	133	0	.	67	G	118250523	A	G	118250523	3	3	99	1	0	0	0	0	1	0	0	0	8214	275	10	2	4587	2	KIAA1210	23	118250523	Missense_Mutation	SNP	A	TCGA-DD-A4NS-01A-11D-A30V-10		118250523	37020037	56	12403											
GRIA3	2892	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	122536848	122536848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GRIA3	NM_000828	exon8	c.C1084A	p.Q362K	CAGGTGCAAGTAC	.	548	31	500	2	.	134	A	122536848	C	A	122536848	3	1	99	1	0	0	0	0	1	0	0	0	6769	711	25	3	1114	3	GRIA3	23	122536848	Missense_Mutation	SNP	C	TCGA-DD-A4NS-01A-11D-A30V-10	4286325	122536848	32733712	57	12404											
SDF4	51150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1152909	1152909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SDF4	NM_016176	exon7	c.G1072A	p.V358M	CGTGCACGCTGCG	.	74	18	59	0	.	154	T	1152909	C	T	1152909	3	4	100	1	0	0	0	0	1	0	0	0	13962	536	19	1	20	1	SDF4	1	1152909	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		1152909	248097712	1	12405											
RBP7	116362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10068317	10068317	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RBP7	NM_052960	exon3	c.A339C	p.G113G	CGAAGGAGACAAA	.	102	11	112	0	.	90	C	10068317	A	C	10068317	2	2	100	1	0	0	0	0	0	0	0	1	13160	291	11	5		5	RBP7	1	10068317	Silent	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	8915408	10068317	239182304	2	12406											
USP1	7398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62914231	62914231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP1	NM_001017415	exon8	c.T1516C	p.C506R	TATTTCTGTGAAA	.	152	19	198	0	.	659	C	62914231	T	C	62914231	3	2	100	1	0	0	0	0	1	0	0	0	17037	1580	55	2	1542	2	USP1	1	62914231	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	52845914	62914231	186336390	3	12407											
CAPZA1	829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113192072	113192072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CAPZA1	NM_006135	exon3	c.C136G	p.L46V	AATCTCCTCAGGG	.	105	25	132	0	.	514	G	113192072	C	G	113192072	3	3	100	1	0	0	0	0	1	0	0	0	2640	681	24	4	146	4	CAPZA1	1	113192072	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	50277841	113192072	136058549	4	12408											
OTUD7B	56957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149915759	149915759	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTUD7B	NM_020205	exon12	c.C2529T	p.F843F	CGTTCAGAACCTG	.	79	8	60	0	.	502	A	149915759	G	A	149915759	2	1	100	1	0	0	0	0	0	0	0	1	11319	933	33	3		3	OTUD7B	1	149915759	Silent	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	36723687	149915759	99334862	5	12409											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156237933	156237933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SMG5	NM_015327	exon9	c.T881C	p.L294P	CTTTGCAGATACA	.	154	11	171	0	.	231	G	156237933	A	G	156237933	3	3	100	1	0	0	0	0	1	0	0	0	14796	188	7	2	2225	2	SMG5	1	156237933	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	6322174	156237933	93012688	6	12410											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167095928	167095928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DUSP27	NM_001080426	exon5	c.G1560T	p.E520D	TGATGAGGACAGC	.	184	56	216	0	.	71	T	167095928	G	T	167095928	3	4	100	1	0	0	0	0	1	0	0	0	4824	991	35	3	1578	3	DUSP27	1	167095928	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	10857995	167095928	82154693	7	12411											
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175052888	175052888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TNN	NM_022093	exon5	c.C1051G	p.L351V	CTAGACCTTGCTG	.	46	16	42	0	.	138	G	175052888	C	G	175052888	3	3	100	1	0	0	0	0	1	0	0	0	16320	681	24	4	1065	4	TNN	1	175052888	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	7956960	175052888	74197733	8	12412											
STX6	10228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180953892	180953892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	STX6	NM_005819	exon7	c.C612G	p.F204L	GTGAGAGAAATCT	.	50	4	61	0	.	91	C	180953892	G	C	180953892	3	2	100	1	0	0	0	0	1	0	0	0	15348	933	33	4	163	4	STX6	1	180953892	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	5901004	180953892	68296729	9	12413											
ATP2B4	493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203678582	203678582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP2B4	NM_001001396	exon11	c.G1711C	p.V571L	AACTCAGTGCGCA	.	244	35	149	2	.	517	C	203678582	G	C	203678582	3	2	100	1	0	0	0	0	1	0	0	0	1142	1029	36	4	1749	4	ATP2B4	1	203678582	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	22724690	203678582	45572039	10	12414											
RRP15	51018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218475635	218475635	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RRP15	NM_016052	exon2	c.140-1G>A	.	TCTATAGGAAGCT	.	183	20	163	0	.	90	A	218475635	G	A	218475635	5	1	100	1	0	0	0	0	0	0	1	0	13687	1014	35	3	145	3	RRP15	1	218475635	Splice_Site	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	14797053	218475635	30774986	11	12415											
PXDN	7837	broad.mit.edu;bcgsc.ca	37	2	1653324	1653324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PXDN	NM_012293	exon17	c.C2228T	p.T743M	TCGTGCGTCCGGT	.	89	6	118	1	.	166	A	1653324	G	A	1653324	3	1	100	1	0	0	0	0	1	0	0	0	12847	1145	40	1	2239	1	PXDN	2	1653324	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10		1653324	241546049	12	12416											
NBAS	51594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15492192	15492192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NBAS	NM_015909	exon35	c.G4103A	p.R1368K	TTCACTCTTTGAT	.	63	15	81	1	.	94	T	15492192	C	T	15492192	3	4	100	1	0	0	0	0	1	0	0	0	10186	913	32	3	3084	3	NBAS	2	15492192	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	13838868	15492192	227707181	13	12417											
RAB1A	5861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65331882	65331882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RAB1A	NM_004161	exon2	c.C82A	p.L28I	TAAGAAGAAGGCA	.	597	148	728	1	.	227	T	65331882	G	T	65331882	3	4	100	1	0	0	0	0	1	0	0	0	12905	942	33	3	555	3	RAB1A	2	65331882	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	49839690	65331882	177867491	14	12418											
LRRTM1	347730	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	80529902	80529902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LRRTM1	NM_178839	exon2	c.C1043A	p.A348E	CCCTGTGCGTACT	.	72	18	95	0	.	73	T	80529902	G	T	80529902	3	4	100	1	0	0	0	0	1	0	0	0	9039	1319	46	3	529	3	LRRTM1	2	80529902	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	15198020	80529902	162669471	15	12419											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152293757	152293757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RIF1	NM_018151	exon13	c.C1375T	p.P459S	TCAGAGCCATTGG	.	181	45	200	0	.	300	T	152293757	C	T	152293757	3	4	100	1	0	0	0	0	1	0	0	0	13359	739	26	3	1421	3	RIF1	2	152293757	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	71763855	152293757	90905616	16	12420											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180348008	180348008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF385B	NM_152520	exon6	c.G661T	p.D221Y	ATTTGTCAGAGTT	.	190	54	213	0	.	23	A	180348008	C	A	180348008	3	1	100	1	0	0	0	0	1	0	0	0	17874	826	29	3	774	3	ZNF385B	2	180348008	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	28054251	180348008	62851365	17	12421											
SLC39A10	57181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	196599744	196599744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC39A10	NM_020342	exon10	c.T2475G	p.I825M	TAAAATTGTGTTT	.	184	17	219	0	.	92	G	196599744	T	G	196599744	3	3	100	1	0	0	0	0	1	0	0	0	14613	1800	63	5	2509	5	SLC39A10	2	196599744	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	16251736	196599744	46599629	18	12422											
STK17B	9262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	197008292	197008292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	STK17B	NM_004226	exon5	c.A599G	p.E200G	AAATATTCTGGTG	.	119	9	173	0	.	334	C	197008292	T	C	197008292	3	2	100	1	0	0	0	0	1	0	0	0	15290	1783	62	2	535	2	STK17B	2	197008292	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	408548	197008292	46191081	19	12423											
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216226796	216226796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FN1	NM_212482	exon45	c.C7258T	p.R2420C	CACAGCGCCAGCC	.	51	4	38	0	.	584	A	216226796	G	A	216226796	3	1	100	1	0	0	0	0	1	0	0	0	5962	1087	38	1	183	1	FN1	2	216226796	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	19218504	216226796	26972577	20	12424											
SERPINE2	5270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224866553	224866553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SERPINE2	NM_001136530	exon2	c.T101C	p.F34S	GGATTGAAGTGGG	.	53	6	67	0	.	290	G	224866553	A	G	224866553	3	3	100	1	0	0	0	0	1	0	0	0	14112	246	9	2	1163	2	SERPINE2	2	224866553	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	8639757	224866553	18332820	21	12425											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	227963489	227963494	+	In_Frame_Del	DEL	AGGGAA	AGGGAA	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	AGGGAA	AGGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1120_1125del	p.374_375del	GCGGCCAGGGAAC	.	114	20	165	0	.	142	-	227963494	AGGGAA	-	227963489	7	5	100	1	0	1	0	1	0	0	0	0	3693	175	7	0	4067	0	COL4A4	2	227963489	In_Frame_Del	DEL	AGGGAA	TCGA-DD-A4NV-01A-11D-A30V-10	3096936	227963489	15235884	22	12426	65	2									
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	227963497	227963499	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1115_1117del	p.372_373del	GGAACCCTGGGTC	.	114	20	165	0	.	142	-	227963499	CTG	-	227963497	7	5	100	1	0	1	0	1	0	0	0	0	3693	681	24	0	4075	0	COL4A4	2	227963497	In_Frame_Del	DEL	CTG	TCGA-DD-A4NV-01A-11D-A30V-10	8	227963497	15235876	23	12427	65	2									
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232079712	232079712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARMC9	NM_025139	exon4	c.C346T	p.P116S	GGGAGACCGGTGG	.	127	34	126	0	.	91	T	232079712	C	T	232079712	3	4	100	1	0	0	0	0	1	0	0	0	958	507	18	3	356	3	ARMC9	2	232079712	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	4116215	232079712	11119661	24	12428											
SEC13	6396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10347279	10347279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEC13	NM_183352	exon6	c.C548T	p.A183V	CCTGATGCAAACC	.	108	17	89	0	.	91	A	10347279	G	A	10347279	3	1	100	1	0	0	0	0	1	0	0	0	13980	1319	46	3	436	3	SEC13	3	10347279	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10		10347279	187675151	25	12429											
KCNH8	131096	broad.mit.edu;bcgsc.ca	37	3	19574931	19574931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCNH8	NM_144633	exon16	c.G2664A	p.M888I	AGACATGAGAAAT	.	102	6	78	0	.	524	A	19574931	G	A	19574931	3	1	100	1	0	0	0	0	1	0	0	0	8038	1290	45	3	2726	3	KCNH8	3	19574931	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	9227652	19574931	178447499	26	12430											
CLEC3B	7123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	45077344	45077344	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLEC3B	NM_003278	exon3	c.G537A	p.A179A	AGGCGCGGCCAAC	.	85	14	76	0	.	90	A	45077344	G	A	45077344	2	1	100	1	0	0	0	0	0	0	0	1	3511	1103	39	1		1	CLEC3B	3	45077344	Silent	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	25502413	45077344	152945086	27	12431											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49316327	49316327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP4	NM_003363	exon21	c.T2653C	p.Y885H	TCGCATATGCAGT	.	106	7	121	0	.	660	G	49316327	A	G	49316327	3	3	100	1	0	0	0	0	1	0	0	0	17068	449	16	2	246	2	USP4	3	49316327	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	4238983	49316327	148706103	28	12432											
PROS1	5627	ucsc.edu;bcgsc.ca	37	3	93611955	93611955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PROS1	NM_000313	exon10	c.A977G	p.E326G	TCAAATTCTGCTG	.	364	79	393	2	.	153	C	93611955	T	C	93611955	3	2	100	1	0	0	0	0	1	0	0	0	12558	1783	62	2	1077	2	PROS1	3	93611955	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	44295628	93611955	104410475	29	12433											
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	113513944	113513952	+	In_Frame_Del	DEL	ATATCCAGC	ATATCCAGC	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	ATATCCAGC	ATATCCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP6V1A	NM_001690	exon10	c.1119_1127del	p.373_376del	TAGTGGATATCCA	.	96	15	106	0	.	93	-	113513952	ATATCCAGC	-	113513944	7	5	100	1	0	1	0	1	0	0	0	0	1177	320	12	0	1153	0	ATP6V1A	3	113513944	In_Frame_Del	DEL	ATATCCAGC	TCGA-DD-A4NV-01A-11D-A30V-10	19901989	113513944	84508486	30	12434											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132175649	132175649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DNAJC13	NM_015268	exon12	c.G1322T	p.G441V	AAGCTGGTTTCCT	.	226	42	200	0	.	272	T	132175649	G	T	132175649	3	4	100	1	0	0	0	0	1	0	0	0	4632	1261	44	3	1364	3	DNAJC13	3	132175649	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	18661705	132175649	65846781	31	12435											
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179096495	179096495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFN1	NM_033540	exon14	c.G1555A	p.D519N	CAAGAGGATATTG	.	199	28	262	0	.	155	A	179096495	G	A	179096495	3	1	100	1	0	0	0	0	1	0	0	0	9523	1174	41	3	1605	3	MFN1	3	179096495	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	46920846	179096495	18925935	32	12436											
MFI2	4241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196744154	196744154	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFI2	NM_005929	exon7	c.G720A	p.T240T	GGGAAGCGTCTTC	.	104	27	123	0	.	90	T	196744154	C	T	196744154	2	4	100	1	0	0	0	0	0	0	0	1	9522	755	27	1		1	MFI2	3	196744154	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	17647659	196744154	1278276	33	12437											
RNF212	285498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1107222	1107222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RNF212	NM_194439	exon1	c.T31A	p.F11I	GCTGGAAGCAGCG	.	100	28	107	0	.	68	T	1107222	A	T	1107222	3	4	100	1	0	0	0	0	1	0	0	0	13476	72	3	4	902	4	RNF212	4	1107222	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10		1107222	190047054	34	12438											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	57889912	57889912	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	POLR2B	NM_000938	exon20	c.C2851T	p.Q951X	TATAGACAAGAGG	.	175	16	204	0	.	92	T	57889912	C	T	57889912	4	4	100	1	0	0	0	0	0	1	0	0	12215	479	17	3	2929	3	POLR2B	4	57889912	Nonsense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	56782690	57889912	133264364	35	12439											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114279036	114279036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ANK2	NM_001148	exon38	c.C9262G	p.P3088A	AGGACCCCAACTG	.	52	15	80	0	.	583	G	114279036	C	G	114279036	3	3	100	1	0	0	0	0	1	0	0	0	621	623	22	4	9477	4	ANK2	4	114279036	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	56389124	114279036	76875240	36	12440											
CLGN	1047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	141313515	141313531	+	Frame_Shift_Del	DEL	TGTATCTTTATGTTTTT	TGTATCTTTATGTTTTT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TGTATCTTTATGTTTTT	TGTATCTTTATGTTTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLGN	NM_001130675	exon14	c.1493_1509del	p.498_503del	ATACTCTGTATCT	.	86	17	117	0	.	93	-	141313531	TGTATCTTTATGTTTTT	-	141313515	7	5	100	1	0	1	0	1	0	0	0	0	3524	1567	55	0	335	0	CLGN	4	141313515	Frame_Shift_Del	DEL	TGTATCTTTATGTTTTT	TCGA-DD-A4NV-01A-11D-A30V-10	27034479	141313515	49840761	37	12441											
CCDC111	201973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185606652	185606652	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC111	NM_152683	exon10	c.G1186T	p.G396X	AAAGGAGGTAAAG	.	237	75	333	0	.	90	T	185606652	G	T	185606652	4	4	100	1	0	0	0	0	0	1	0	0	2748	1014	35	3	1216	3	CCDC111	4	185606652	Nonsense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	44293137	185606652	5547624	38	12442											
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1245974	1245974	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC6A18	NM_182632	exon12	c.C1668G	p.P556P	GTTCCCCTCGCGT	.	101	20	85	0	.	91	G	1245974	C	G	1245974	2	3	100	1	0	0	0	0	0	0	0	1	14681	668	24	4		4	SLC6A18	5	1245974	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		1245974	179669286	39	12443											
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	54586093	54586096	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DHX29	NM_019030	exon7	c.857_860del	p.286_287del	CCTTGCTTGTTTT	.	138	25	144	0	.	229	-	54586096	TTGT	-	54586093	7	5	100	1	0	1	0	1	0	0	0	0	4503	1609	56	0	3333	0	DHX29	5	54586093	Frame_Shift_Del	DEL	TTGT	TCGA-DD-A4NV-01A-11D-A30V-10	53340119	54586093	126329167	40	12444											
OTP	23440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76932919	76932919	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTP	NM_032109	exon2	c.G174T	p.L58L	CCCGGGCAGCAGA	.	76	13	75	0	.	69	A	76932919	C	A	76932919	2	1	100	1	0	0	0	0	0	0	0	1	11310	697	25	3		3	OTP	5	76932919	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	22346826	76932919	103982341	41	12445											
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	79733274	79733274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFYVE16	NM_001105251	exon4	c.A770G	p.H257R	TGTTTCATGCCAA	.	250	16	224	0	.	90	G	79733274	A	G	79733274	3	3	100	1	0	0	0	0	1	0	0	0	17661	217	8	2	776	2	ZFYVE16	5	79733274	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	2800355	79733274	101181986	42	12446											
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	81474399	81474399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATG10	NM_001131028	exon6	c.C446T	p.T149M	CTATTACGCAACA	.	161	11	126	0	.	90	T	81474399	C	T	81474399	3	4	100	1	0	0	0	0	1	0	0	0	1089	536	19	1	460	1	ATG10	5	81474399	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	1741125	81474399	99440861	43	12447											
NUDT12	83594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102886634	102886634	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NUDT12	NM_031438	exon7	c.C1317T	p.F439F	CACAAAGAATGCC	.	123	25	121	0	.	90	A	102886634	G	A	102886634	2	1	100	1	0	0	0	0	0	0	0	1	10728	933	33	3		3	NUDT12	5	102886634	Silent	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	21412235	102886634	78028626	44	12448											
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	129520172	129520172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CHSY3	NM_175856	exon3	c.T1337A	p.L446Q	AGCAGCTGGGAGT	.	172	7	178	0	.	25	A	129520172	T	A	129520172	3	1	100	1	0	0	0	0	1	0	0	0	3413	1580	55	4	1347	4	CHSY3	5	129520172	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	26633538	129520172	51395088	45	12449											
PCDH1	5097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141244054	141244054	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PCDH1	NM_032420	exon3	c.G1842C	p.L614L	GCCACTCAGCATA	.	55	8	64	0	.	95	G	141244054	C	G	141244054	2	3	100	1	0	0	0	0	0	0	0	1	11506	813	29	4		4	PCDH1	5	141244054	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	11723882	141244054	39671206	46	12450											
ARHGEF37	389337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149003635	149003635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARHGEF37	NM_001001669	exon10	c.C1396T	p.R466W	CTGGGCCGGACGA	.	66	4	48	0	.	90	T	149003635	C	T	149003635	3	4	100	1	0	0	0	0	1	0	0	0	906	643	23	1	1430	1	ARHGEF37	5	149003635	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	7759581	149003635	31911625	47	12451											
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149631366	149631366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CAMK2A	NM_171825	exon9	c.T640C	p.W214R	CATCCCAGAACGG	.	171	9	162	0	.	333	G	149631366	A	G	149631366	3	3	100	1	0	0	0	0	1	0	0	0	2599	188	7	2	873	2	CAMK2A	5	149631366	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	627731	149631366	31283894	48	12452											
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150947398	150947398	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FAT2	NM_001447	exon1	c.T1095A	p.A365A	GTAAACAGCCTTC	.	207	40	173	1	.	96	T	150947398	A	T	150947398	2	4	100	1	0	0	0	0	0	0	0	1	5690	175	7	4		4	FAT2	5	150947398	Silent	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	1316032	150947398	29967862	49	12453											
NHP2	55651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177577899	177577899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NHP2	NM_017838	exon3	c.C326T	p.P109L	TTAGAGGGGATAT	.	50	11	46	0	.	90	A	177577899	G	A	177577899	3	1	100	1	0	0	0	0	1	0	0	0	10409	1232	43	3	143	3	NHP2	5	177577899	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	26630501	177577899	3337361	50	12454											
ELOVL2	54898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10995354	10995354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ELOVL2	NM_017770	exon5	c.A391C	p.I131L	AGAAAATTGTGTC	.	172	51	247	0	.	90	G	10995354	T	G	10995354	3	3	100	1	0	0	0	0	1	0	0	0	5074	1493	52	5	515	5	ELOVL2	6	10995354	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10		10995354	160119713	51	12455											
DEK	7913	hgsc.bcm.edu;bcgsc.ca	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DEK	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG	.	62	5	69	0	C|0.999;G|0.001	658	G	18264096	C	G	18264096	3	3	100	1	0	0	0	0	1	0	0	0	4424	680	24	4	1044	4	DEK	6	18264096	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	7268742	18264096	152850971	52	12456											
C6orf62	81688	hgsc.bcm.edu;bcgsc.ca	37	6	24718827	24718828	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C6orf62	NM_030939	exon1	c.70_71insA	p.E24fs	GAGATTCTTTTTT	.	133	16	173	0	.	90	T	24718828	-	T	24718827	7	5	100	1	0	1	1	0	0	0	0	0	2368	922	32	0	639	0	C6orf62	6	24718827	Frame_Shift_Ins	INS	-	TCGA-DD-A4NV-01A-11D-A30V-10	6454731	24718827	146396240	53	12457											
SLC17A2	10246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	25917287	25917287	+	Silent	SNP	T	T	C	rs200248053		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC17A2	NM_005835	exon7	c.A678G	p.L226L	GAACCATAGGAGA	.	44	4	57	0	T|0.999;C|0.000	91	C	25917287	T	C	25917287	2	2	100	1	0	0	0	0	0	0	0	1	14417	1393	49	2		2	SLC17A2	6	25917287	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	1198460	25917287	145197780	54	12458											
HIST1H4J	8363	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27791909	27791909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	HIST1H4J	NM_021968	exon1	c.G7A	p.G3S	ATGTCTGGCCGCG	.	245	57	317	1	.	92	A	27791909	G	A	27791909	3	1	100	1	0	0	0	0	1	0	0	0	7174	1348	47	3	9	3	HIST1H4J	6	27791909	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	1874622	27791909	143323158	55	12459											
EGFL8	80864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32134918	32134918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EGFL8	NM_030652	exon6	c.C485A	p.T162K	TTAATACGGCAGG	.	80	19	82	0	.	90	A	32134918	C	A	32134918	3	1	100	1	0	0	0	0	1	0	0	0	4965	536	19	1	503	1	EGFL8	6	32134918	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	4343009	32134918	138980149	56	12460											
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35255576	35255576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF76	NM_003427	exon5	c.G386T	p.G129V	ATGAGGGCTTCAG	.	48	13	64	0	.	90	T	35255576	G	T	35255576	3	4	100	1	0	0	0	0	1	0	0	0	18132	1203	42	3	400	3	ZNF76	6	35255576	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	3120658	35255576	135859491	57	12461											
TFAP2B	7021	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	50791246	50791246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TFAP2B	NM_003221	exon2	c.T208G	p.F70V	CCCTACTTCCCAC	.	136	35	168	1	.	90	G	50791246	T	G	50791246	3	3	100	1	0	0	0	0	1	0	0	0	15785	1609	56	5	214	5	TFAP2B	6	50791246	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	15535670	50791246	120323821	58	12462											
RFPL4B	442247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112671285	112671285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RFPL4B	NM_001013734	exon3	c.T375A	p.D125E	CCACGATCTGACA	.	54	5	66	0	.	68	A	112671285	T	A	112671285	3	1	100	1	0	0	0	0	1	0	0	0	13256	1432	50	4	377	4	RFPL4B	6	112671285	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	61880039	112671285	58443782	59	12463											
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	155458347	155458347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TIAM2	NM_012454	exon4	c.A1231T	p.S411C	TTTGACAGTCGCT	.	72	6	96	0	.	93	T	155458347	A	T	155458347	3	4	100	1	0	0	0	0	1	0	0	0	15888	188	7	4	1237	4	TIAM2	6	155458347	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	42787062	155458347	15656720	60	12464											
CYP2W1	54905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1024648	1024648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CYP2W1	NM_017781	exon3	c.C400T	p.H134Y	GCCCTGCACAGCC	.	63	9	36	0	.	90	T	1024648	C	T	1024648	3	4	100	1	0	0	0	0	1	0	0	0	4176	710	25	3	410	3	CYP2W1	7	1024648	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		1024648	158114015	61	12465											
EEPD1	80820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36336619	36336619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EEPD1	NM_030636	exon7	c.A1333G	p.I445V	GTCATTATCTTAG	.	155	20	119	0	.	68	G	36336619	A	G	36336619	3	3	100	1	0	0	0	0	1	0	0	0	4932	449	16	2	1355	2	EEPD1	7	36336619	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	35311971	36336619	122802044	62	12466											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47342556	47342556	+	Missense_Mutation	SNP	G	G	A	rs199534852		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TNS3	NM_022748	exon22	c.C3449T	p.P1150L	GGCAGAGGTGAGG	.	131	22	84	0	G|0.999;A|0.001	94	A	47342556	G	A	47342556	3	1	100	1	0	0	0	0	1	0	0	0	16341	1000	35	3	928	3	TNS3	7	47342556	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	11005937	47342556	111796107	63	12467											
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72985569	72985569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TBL2	NM_012453	exon6	c.G828T	p.K276N	GTGGCCCTTTAGT	.	144	27	135	0	.	90	A	72985569	C	A	72985569	3	1	100	1	0	0	0	0	1	0	0	0	15639	680	24	3	523	3	TBL2	7	72985569	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	25643013	72985569	86153094	64	12468											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82764470	82764470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PCLO	NM_014510	exon3	c.C2396G	p.S799C	TTGGCAGAGTCTG	.	234	15	216	0	.	29	C	82764470	G	C	82764470	3	2	100	1	0	0	0	0	1	0	0	0	11583	942	33	4	13141	4	PCLO	7	82764470	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	9778901	82764470	76374193	65	12469											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83643565	83643565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEMA3A	NM_006080	exon7	c.C770A	p.S257Y	TTTCCAGAGTGTT	.	106	13	93	0	.	156	T	83643565	G	T	83643565	3	4	100	1	0	0	0	0	1	0	0	0	14024	942	33	3	1589	3	SEMA3A	7	83643565	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	879095	83643565	75495098	66	12470											
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86824435	86824435	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DMTF1	NM_001142327	exon18	c.A2262T	p.E754D	TGTCGAAGATTTG	.	280	51	212	0	.	91	T	86824435	A	T	86824435	3	4	100	1	0	0	0	0	1	0	0	0	4592	69	3	4	2324	4	DMTF1	7	86824435	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	3180870	86824435	72314228	67	12471											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88964910	88964910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF804B	NM_181646	exon4	c.C2614A	p.Q872K	AGAAATCAAGAGT	.	273	35	193	0	.	101	A	88964910	C	A	88964910	3	1	100	1	0	0	0	0	1	0	0	0	18168	827	29	3	2628	3	ZNF804B	7	88964910	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	2140475	88964910	70173753	68	12472											
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92027849	92027849	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ANKIB1	NM_019004	exon20	c.A2856G	p.S952S	TCCCTCATCTAGT	.	121	15	97	0	.	432	G	92027849	A	G	92027849	2	3	100	1	0	0	0	0	0	0	0	1	630	204	8	2		2	ANKIB1	7	92027849	Silent	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	3062939	92027849	67110814	69	12473											
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98580989	98580989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TRRAP	NM_001244580	exon59	c.G8908A	p.V2970M	AAGACGGTGGTGA	.	185	37	139	0	.	923	A	98580989	G	A	98580989	3	1	100	1	0	0	0	0	1	0	0	0	16598	1261	44	3	9080	3	TRRAP	7	98580989	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	6553140	98580989	60557674	70	12474											
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135303347	135303347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NUP205	NM_015135	exon28	c.A3959C	p.D1320A	TGCATGATAAGGT	.	72	11	65	0	.	207	C	135303347	A	C	135303347	3	2	100	1	0	0	0	0	1	0	0	0	10759	333	12	5	4069	5	NUP205	7	135303347	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	36722358	135303347	23835316	71	12475											
ZNF212	7988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148949877	148949877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF212	NM_012256	exon4	c.G622A	p.A208T	GGTGGTGCCCACC	.	87	7	57	0	.	91	A	148949877	G	A	148949877	3	1	100	1	0	0	0	0	1	0	0	0	17765	1319	46	3	636	3	ZNF212	7	148949877	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	13646530	148949877	10188786	72	12476											
CHPF2	54480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150935740	150935740	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CHPF2	NM_019015	exon4	c.T2292A	p.F764L	TCTCTTTGAGCAG	.	61	6	48	0	.	91	A	150935740	T	A	150935740	3	1	100	1	0	0	0	0	1	0	0	0	3369	1809	63	4	2306	4	CHPF2	7	150935740	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	1985863	150935740	8202923	73	12477											
DPP6	1804	hgsc.bcm.edu;broad.mit.edu	37	7	153750014	153750014	+	Missense_Mutation	SNP	G	G	A	rs2240820		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DPP6	NM_130797	exon1	c.G109A	p.G37S	GAGGACGGCGGCG	.	28	8	10	0	.	652	A	153750014	G	A	153750014	3	1	100	1	0	0	0	0	1	0	0	0	4730	1116	39	1	166	1	DPP6	7	153750014	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	2814274	153750014	5388649	74	12478											
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	36666269	36666269	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCNU1	NM_001031836	exon7	c.A690C	p.I230I	GTCAATAATTCTC	.	94	12	154	0	.	23	C	36666269	A	C	36666269	2	2	100	1	0	0	0	0	0	0	0	1	8093	352	13	5		5	KCNU1	8	36666269	Silent	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10		36666269	109697753	75	12479											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	56015167	56015167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	XKR4	NM_052898	exon1	c.C119A	p.S40X	TGCCGTCGGGGTC	.	84	22	76	0	.	92	A	56015167	C	A	56015167	4	1	100	1	0	0	0	0	0	1	0	0	17430	893	31	1	121	1	XKR4	8	56015167	Nonsense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	19348898	56015167	90348855	76	12480											
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	101271389	101271389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RNF19A	NM_015435	exon11	c.G1912T	p.D638Y	TGCCATCATCCAC	.	39	4	39	0	.	229	A	101271389	C	A	101271389	3	1	100	1	0	0	0	0	1	0	0	0	13470	826	29	3	608	3	RNF19A	8	101271389	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	45256222	101271389	45092633	77	12481											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113519059	113519059	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CSMD3	NM_052900	exon29	c.4445-1G>T	.	AGGGTGCTTTAAT	.	115	8	162	0	.	1132	A	113519059	C	A	113519059	5	1	100	1	0	0	0	0	0	0	1	0	3946	811	28	3	6539	3	CSMD3	8	113519059	Splice_Site	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	12247670	113519059	32844963	78	12482											
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120430376	120430376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NOV	NM_002514	exon3	c.A389G	p.Q130R	AATTCCAGTGCAC	.	95	28	95	0	.	228	G	120430376	A	G	120430376	3	3	100	1	0	0	0	0	1	0	0	0	10553	188	7	2	399	2	NOV	8	120430376	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	6911317	120430376	25933646	79	12483											
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142176419	142176419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DENND3	NM_014957	exon12	c.C1444A	p.P482T	GCCATGCCTGAGC	.	43	17	45	0	.	91	A	142176419	C	A	142176419	3	1	100	1	0	0	0	0	1	0	0	0	4432	739	26	3	1486	3	DENND3	8	142176419	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	21746043	142176419	4187603	80	12484											
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145113709	145113709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OPLAH	NM_017570	exon5	c.G554A	p.R185H	AGGCTGCGGATGC	.	49	14	66	0	.	68	T	145113709	C	T	145113709	3	4	100	1	0	0	0	0	1	0	0	0	10876	768	27	1	3406	1	OPLAH	8	145113709	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	2937290	145113709	1250313	81	12485											
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457351	107457351	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR13D1	NM_001004484	exon1	c.C649T	p.L217L	GCCCTTCTAAAAC	.	151	35	178	0	.	70	T	107457351	C	T	107457351	2	4	100	1	0	0	0	0	0	0	0	1	10940	912	32	3		3	OR13D1	9	107457351	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		107457351	33756080	82	12486											
WDR31	114987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	116085393	116085393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	WDR31	NM_001012361	exon6	c.C367T	p.R123C	TGTCACGAGAGGC	.	97	5	97	0	.	90	A	116085393	G	A	116085393	3	1	100	1	0	0	0	0	1	0	0	0	17283	1058	37	1	760	1	WDR31	9	116085393	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	8628042	116085393	25128038	83	12487											
URM1	81605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131151593	131151593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	URM1	NM_001135947	exon4	c.G242T	p.S81I	TGGTCAGTACCTT	.	75	13	45	0	.	90	T	131151593	G	T	131151593	3	4	100	1	0	0	0	0	1	0	0	0	17024	1029	36	3	256	3	URM1	9	131151593	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	15066200	131151593	10061838	84	12488											
C9orf9	11092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135763682	135763682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C9orf9	NM_018956	exon4	c.C353G	p.P118R	GATACCCTCATGA	.	148	32	142	0	.	90	G	135763682	C	G	135763682	3	3	100	1	0	0	0	0	1	0	0	0	2504	681	24	4	363	4	C9orf9	9	135763682	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	4612089	135763682	5449749	85	12489											
USP6NL	9712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	11505005	11505005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP6NL	NM_001080491	exon14	c.A1973C	p.N658T	GGAGAGTTTCCGT	.	48	6	43	0	.	628	G	11505005	T	G	11505005	3	3	100	1	0	0	0	0	1	0	0	0	17084	1725	60	5	568	5	USP6NL	10	11505005	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10		11505005	124029742	86	12490											
YME1L1	10730	broad.mit.edu;bcgsc.ca	37	10	27434519	27434519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	YME1L1	NM_139312	exon4	c.C340A	p.P114T	GTGAAGGCTGTAA	.	111	5	140	0	.	91	T	27434519	G	T	27434519	3	4	100	1	0	0	0	0	1	0	0	0	17484	1217	42	3	2049	3	YME1L1	10	27434519	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	15929514	27434519	108100228	87	12491											
MPP7	143098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	28378706	28378706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MPP7	NM_173496	exon14	c.A1017G	p.E339E	CTTGCATTCATAC	.	96	11	116	0	.	45	C	28378706	T	C	28378706	2	2	100	1	0	0	0	0	0	0	0	1	9739	1490	52	2		2	MPP7	10	28378706	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	944187	28378706	107156041	88	12492											
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43598063	43598063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RET	NM_020975	exon3	c.A611G	p.Y204C	TGGCCTACAGGCT	.	34	6	61	0	.	4507	G	43598063	A	G	43598063	3	3	100	1	0	0	0	0	1	0	0	0	13235	391	14	2	621	2	RET	10	43598063	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	15219357	43598063	91936684	89	12493											
ERCC6	2074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50669432	50669432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ERCC6	NM_000124	exon19	c.C3949T	p.Q1317X	CCCTGTGGCCAGT	.	39	11	57	1	.	1153	A	50669432	G	A	50669432	4	1	100	1	0	0	0	0	0	1	0	0	5217	1348	47	3	544	3	ERCC6	10	50669432	Nonsense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	7071369	50669432	84865315	90	12494											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	63850753	63850753	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARID5B	NM_032199	exon10	c.A1531T	p.R511X	GCATCCAGAGTAG	.	150	16	168	0	.	94	T	63850753	A	T	63850753	4	4	100	1	0	0	0	0	0	1	0	0	922	180	7	4	1569	4	ARID5B	10	63850753	Nonsense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	13181321	63850753	71683994	91	12495											
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98762480	98762480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLIT1	NM_003061	exon35	c.G4135A	p.G1379S	AGGGGCCGTCAGC	.	31	7	48	0	.	94	T	98762480	C	T	98762480	3	4	100	1	0	0	0	0	1	0	0	0	14739	652	23	1	481	1	SLIT1	10	98762480	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	34911727	98762480	36772267	92	12496											
SLIT1	6585	broad.mit.edu;mdanderson.org	37	10	98945408	98945408	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLIT1	NM_003061	exon1	c.G24A	p.G8G	CGAGGACCCCCAC	.	21	4	29	0	.	94	T	98945408	C	T	98945408	2	4	100	1	0	0	0	0	0	0	0	1	14739	494	18	3		3	SLIT1	10	98945408	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	182928	98945408	36589339	93	12497											
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114912183	114912183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TCF7L2	NM_001146283	exon11	c.C1325A	p.S442Y	GCTGGTCCGCGCG	.	59	7	48	0	.	586	A	114912183	C	A	114912183	3	1	100	1	0	0	0	0	1	0	0	0	15695	855	30	3	1440	3	TCF7L2	10	114912183	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	15966775	114912183	20622564	94	12498											
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587564	55587564	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR5D18	NM_001001952	exon1	c.A459T	p.G153G	CTGGGGAGTCTCA	.	150	29	152	0	.	71	T	55587564	A	T	55587564	2	4	100	1	0	0	0	0	0	0	0	1	11157	291	11	4		4	OR5D18	11	55587564	Silent	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10		55587564	79418952	95	12499											
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56113645	56113645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR8K1	NM_001002907	exon1	c.C131A	p.T44K	TGGTCACAGTGAT	.	120	25	118	0	.	70	A	56113645	C	A	56113645	3	1	100	1	0	0	0	0	1	0	0	0	11243	478	17	3	133	3	OR8K1	11	56113645	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	526081	56113645	78892871	96	12500											
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70332701	70332701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SHANK2	NM_133266	exon10	c.G1933A	p.G645R	TGGGTCCCTGTTG	.	79	14	68	1	.	94	T	70332701	C	T	70332701	3	4	100	1	0	0	0	0	1	0	0	0	14265	632	22	3	1860	3	SHANK2	11	70332701	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	14219056	70332701	64673815	97	12501											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102826222	102826222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MMP13	NM_002427	exon2	c.C121T	p.R41C	GGTAGCGCTAGAA	.	73	19	70	0	.	229	A	102826222	G	A	102826222	3	1	100	1	0	0	0	0	1	0	0	0	9652	1101	38	1	1330	1	MMP13	11	102826222	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	32493521	102826222	32180294	98	12502											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103060527	103060527	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DYNC2H1	NM_001377	exon45	c.G7419C	p.M2473I	ATCTATGGTACAA	.	79	11	91	0	.	68	C	103060527	G	C	103060527	3	2	100	1	0	0	0	0	1	0	0	0	4846	1348	47	4	7597	4	DYNC2H1	11	103060527	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	234305	103060527	31945989	99	12503											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	103229042	103229042	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DYNC2H1	NM_001080463	exon84	c.T12132C	p.S4044S	CTGGTCTAATGAA	.	101	7	113	0	.	68	C	103229042	T	C	103229042	2	2	100	1	0	0	0	0	0	0	0	1	4846	1509	53	2		2	DYNC2H1	11	103229042	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	168515	103229042	31777474	100	12504											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108114704	108114704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATM	NM_000051	exon6	c.T521G	p.L174R	TCAGGCTCTATCT	.	288	67	287	0	.	3419	G	108114704	T	G	108114704	3	3	100	1	0	0	0	0	1	0	0	0	1109	1551	54	5	539	5	ATM	11	108114704	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	4885662	108114704	26891812	101	12505											
CCDC84	338657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118869172	118869172	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC84	NM_198489	exon2	c.T153G	p.A51A	CGCCGCTCAGGTG	.	45	7	58	0	.	91	G	118869172	T	G	118869172	2	3	100	1	0	0	0	0	0	0	0	1	2858	1538	54	5		5	CCDC84	11	118869172	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	10754468	118869172	16137344	102	12506											
IQSEC3	440073	hgsc.bcm.edu;bcgsc.ca	37	12	274692	274692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.G2802C	p.E934D	CTTTGAGAACGAG	.	80	6	89	0	.	560	C	274692	G	C	274692	3	2	100	1	0	0	0	0	1	0	0	0	7819	933	33	4	2840	4	IQSEC3	12	274692	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10		274692	133577203	103	12507	66	2									
IQSEC3	440073	hgsc.bcm.edu;bcgsc.ca	37	12	274696	274696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.G2806C	p.E936Q	GAGAACGAGTGTA	.	79	7	86	0	.	560	C	274696	G	C	274696	3	2	100	1	0	0	0	0	1	0	0	0	7819	1059	37	4	2844	4	IQSEC3	12	274696	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	4	274696	133577199	104	12508	66	2									
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51442826	51442826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LETMD1	NM_001243689	exon2	c.G132T	p.K44N	TTCAAAGCTTCAC	.	67	20	92	0	.	90	T	51442826	G	T	51442826	3	4	100	1	0	0	0	0	1	0	0	0	8736	962	34	3	138	3	LETMD1	12	51442826	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	51168130	51442826	82409069	105	12509											
NXPH4	11247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57619424	57619424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NXPH4	NM_007224	exon2	c.T821C	p.F274S	AGCCCTTCAAAGT	.	50	18	51	0	.	68	C	57619424	T	C	57619424	3	2	100	1	0	0	0	0	1	0	0	0	10793	1783	62	2	827	2	NXPH4	12	57619424	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	6176598	57619424	76232471	106	12510											
TMEM132B	114795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125834659	125834659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMEM132B	NM_052907	exon2	c.G714T	p.W238C	CAAGTGGGAGAAC	.	56	8	74	1	.	185	T	125834659	G	T	125834659	3	4	100	1	0	0	0	0	1	0	0	0	16043	1241	43	3	720	3	TMEM132B	12	125834659	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	68215235	125834659	8017236	107	12511	67	2									
TMEM132B	114795	broad.mit.edu;ucsc.edu	37	12	125834660	125834660	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMEM132B	NM_052907	exon2	c.G715T	p.E239X	AAGTGGGAGAACA	.	56	8	74	1	.	185	T	125834660	G	T	125834660	4	4	100	1	0	0	0	0	0	1	0	0	16043	1175	41	3	721	3	TMEM132B	12	125834660	Nonsense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	1	125834660	8017235	108	12512	67	2									
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	52542657	52542657	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP7B	NM_000053	exon4	c.C1630G	p.Q544E	TGAACTGAGCTAT	.	98	10	106	0	.	92	C	52542657	G	C	52542657	3	2	100	1	0	0	0	0	1	0	0	0	1191	1299	45	4	2839	4	ATP7B	13	52542657	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10		52542657	62627221	109	12513											
ITGBL1	9358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102345029	102345029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ITGBL1	NM_004791	exon8	c.C1110A	p.D370E	TGAAGACCTCGAT	.	98	27	136	2	.	92	A	102345029	C	A	102345029	3	1	100	1	0	0	0	0	1	0	0	0	7902	506	18	3	1140	3	ITGBL1	13	102345029	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	49802372	102345029	12824849	110	12514											
IRS2	8660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	110436226	110436226	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IRS2	NM_003749	exon1	c.C2175T	p.G725G	GTAGCCGCCCCCG	.	26	5	29	0	.	1334	A	110436226	G	A	110436226	2	1	100	1	0	0	0	0	0	0	0	1	7841	1074	38	1		1	IRS2	13	110436226	Silent	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	8091197	110436226	4733652	111	12515											
OR4M1	441670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20248815	20248815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR4M1	NM_001005500	exon1	c.A334G	p.M112V	TCGGAGATGTTCT	.	208	25	237	0	.	68	G	20248815	A	G	20248815	3	3	100	1	0	0	0	0	1	0	0	0	11075	333	12	2	336	2	OR4M1	14	20248815	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10		20248815	87100725	112	12516											
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77705090	77705090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_020431	exon10	c.A705T	p.E235D	CCCAGAACTCATC	.	113	24	150	0	.	.	T	77705090	A	T	77705090	3	4	100	1	0	0	0	0	1	0	0	0	16189	40	2	4	735	4	TMEM63C	14	77705090	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	57456275	77705090	29644450	113	12517											
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	52356857	52356857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAPK6	NM_002748	exon6	c.A1826G	p.Q609R	TAAATCAGTTTTG	.	379	22	381	0	.	1403	G	52356857	A	G	52356857	3	3	100	1	0	0	0	0	1	0	0	0	9281	188	7	2	1844	2	MAPK6	15	52356857	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10		52356857	50174535	114	12518											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62146685	62146685	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS13C	NM_020821	exon85	c.A11233C	p.R3745R	GAAGTCTCACTGA	.	100	28	93	0	.	92	G	62146685	T	G	62146685	2	3	100	1	0	0	0	0	0	0	0	1	17188	1559	54	5		5	VPS13C	15	62146685	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	9789828	62146685	40384707	115	12519											
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86273887	86273887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AKAP13	NM_006738	exon30	c.A7243G	p.T2415A	TCCAACACAGAAG	.	73	15	75	0	.	258	G	86273887	A	G	86273887	3	3	100	1	0	0	0	0	1	0	0	0	449	159	6	2	7415	2	AKAP13	15	86273887	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	24127202	86273887	16257505	116	12520											
MFGE8	4240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89443027	89443027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFGE8	NM_005928	exon7	c.T886A	p.S296T	CCTTCGAGGAGCC	.	93	20	79	0	.	91	T	89443027	A	T	89443027	3	4	100	1	0	0	0	0	1	0	0	0	9520	304	11	4	285	4	MFGE8	15	89443027	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	3169140	89443027	13088365	117	12521											
BLM	641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91347543	91347543	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BLM	NM_000057	exon19	c.C3705A	p.V1235V	TGGTGTCCATTAC	.	188	41	173	0	.	664	A	91347543	C	A	91347543	2	1	100	1	0	0	0	0	0	0	0	1	1445	842	30	3		3	BLM	15	91347543	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	1904516	91347543	11183849	118	12522											
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91448631	91448631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAN2A2	NM_006122	exon2	c.A283G	p.N95D	ACGGTCAATGGCT	.	66	6	68	0	.	136	G	91448631	A	G	91448631	3	3	100	1	0	0	0	0	1	0	0	0	9215	130	5	2	289	2	MAN2A2	15	91448631	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	101088	91448631	11082761	119	12523											
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	15727524	15727524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KIAA0430	NM_014647	exon5	c.G1183A	p.D395N	TGATGTCACATAC	.	77	7	90	0	.	90	T	15727524	C	T	15727524	3	4	100	1	0	0	0	0	1	0	0	0	8177	826	29	3	4140	3	KIAA0430	16	15727524	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		15727524	74627229	120	12524											
ALDOA	226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30080632	30080632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ALDOA	NM_001243177	exon7	c.C708T	p.G236G	GAATGGCATTGTG	.	60	18	96	0	.	226	T	30080632	C	T	30080632	2	4	100	1	0	0	0	0	0	0	0	1	507	697	25	3		3	ALDOA	16	30080632	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	14353108	30080632	60274121	121	12525											
CDH15	1013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89258218	89258218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CDH15	NM_004933	exon10	c.C1531T	p.P511S	GACCTGCCCCCCC	.	47	10	49	0	.	523	T	89258218	C	T	89258218	3	4	100	1	0	0	0	0	1	0	0	0	3100	739	26	3	1569	3	CDH15	16	89258218	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	59177586	89258218	1096535	122	12526											
FAM101B	359845	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	293163	293163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	TAGTTGCGCCACG	.	67	20	86	0	.	.	T	293163	C	T	293163	3	4	100	1	0	0	0	0	1	0	0	0	5381	768	27	1	211	1	FAM101B	17	293163	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		293163	80902047	123	12527											
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2200545	2200545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SMG6	NM_017575	exon4	c.C2143T	p.R715C	TCTTGCGTAATGG	.	75	19	86	0	.	228	A	2200545	G	A	2200545	3	1	100	1	0	0	0	0	1	0	0	0	14797	1145	40	1	2180	1	SMG6	17	2200545	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	1907382	2200545	78994665	124	12528											
RHOT1	55288	hgsc.bcm.edu;broad.mit.edu	37	17	30469471	30469476	+	Splice_Site	DEL	CCGCCG	CCGCCG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CCGCCG	CCGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RHOT1	.	.	.	.	TCGTCCCCGCCGC	.	44	13	16	0	.	93	-	30469476	CCGCCG	-	30469471	8	5	100	1	0	1	0	1	0	0	1	0	13343	638	22	0		0	RHOT1	17	30469471	Splice_Site	DEL	CCGCCG	TCGA-DD-A4NV-01A-11D-A30V-10	28268926	30469471	50725739	125	12529											
SNX11	29916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46196421	46196421	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SNX11	NM_013323	exon6	c.T412A	p.C138S	GAAGCCTGTGTCC	.	53	7	83	0	.	226	A	46196421	T	A	46196421	3	1	100	1	0	0	0	0	1	0	0	0	14882	1580	55	4	430	4	SNX11	17	46196421	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	15726950	46196421	34998789	126	12530											
SUPT4H1	6827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56423671	56423671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SUPT4H1	NM_003168	exon5	c.T290A	p.I97N	CGCACGATTCCTG	.	52	13	50	0	.	182	T	56423671	A	T	56423671	3	4	100	1	0	0	0	0	1	0	0	0	15395	333	12	4	67	4	SUPT4H1	17	56423671	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	10227250	56423671	24771539	127	12531											
AMZ2	51321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66252013	66252013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AMZ2	NM_001033572	exon7	c.A923G	p.Y308C	AAAGATACAAAGT	.	42	10	49	0	.	22	G	66252013	A	G	66252013	3	3	100	1	0	0	0	0	1	0	0	0	597	391	14	2	941	2	AMZ2	17	66252013	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	9828342	66252013	14943197	128	12532											
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79428710	79428710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BAHCC1	.	.	.	.	TCCTCCGACAACG	.	128	29	154	0	.	23	A	79428710	G	A	79428710	3	1	100	1	0	0	0	0	1	0	0	0	1296	1058	37	1	6954	1	BAHCC1	17	79428710	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	13176697	79428710	1766500	129	12533											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039092	80039092	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FASN	NM_004104	exon38	c.A6543G	p.Q2181Q	CGTGAGTTGCCGC	.	75	16	63	0	.	90	C	80039092	T	C	80039092	2	2	100	1	0	0	0	0	0	0	0	1	5683	1722	60	2		2	FASN	17	80039092	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	610382	80039092	1156118	130	12534											
FASN	2194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80050583	80050583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FASN	NM_004104	exon7	c.C884T	p.T295I	GTGCCTGTGCCGT	.	25	8	40	0	.	90	A	80050583	G	A	80050583	3	1	100	1	0	0	0	0	1	0	0	0	5683	1377	48	3	6799	3	FASN	17	80050583	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	11491	80050583	1144627	131	12535											
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1796715	1796715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_138813	exon16	c.G1748A	p.R583H	CCTGGGCGCTCAC	.	83	18	87	0	.	.	T	1796715	C	T	1796715	3	4	100	1	0	0	0	0	1	0	0	0	1196	768	27	1	2240	1	ATP8B3	19	1796715	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		1796715	57332268	132	12536											
TLE6	79816	broad.mit.edu;bcgsc.ca	37	19	2991926	2991926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TLE6	NM_001143986	exon14	c.C1330T	p.R444W	TGTCTGCGGTGCT	.	71	5	56	0	.	91	T	2991926	C	T	2991926	3	4	100	1	0	0	0	0	1	0	0	0	15939	759	27	1	1380	1	TLE6	19	2991926	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	1195211	2991926	56137057	133	12537											
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8651245	8651245	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ADAMTS10	NM_030957	exon21	c.C2513G	p.S838W	TGGGCCGAGCACT	.	144	39	122	0	.	229	C	8651245	G	C	8651245	3	2	100	1	0	0	0	0	1	0	0	0	256	1059	37	4	822	4	ADAMTS10	19	8651245	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	5659319	8651245	50477738	134	12538											
MAST3	23031	hgsc.bcm.edu;broad.mit.edu	37	19	18255828	18255828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAST3	NM_015016	exon23	c.G2741C	p.G914A	GCGGCGGCCCCCT	.	51	5	41	0	.	502	C	18255828	G	C	18255828	3	2	100	1	0	0	0	0	1	0	0	0	9326	1203	42	4	2831	4	MAST3	19	18255828	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	9604583	18255828	40873155	135	12539											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36831783	36831783	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFP14	NM_020917	exon5	c.G945A	p.K315K	ACATTCCTTACAT	.	68	16	76	0	.	91	T	36831783	C	T	36831783	2	4	100	1	0	0	0	0	0	0	0	1	17636	680	24	3		3	ZFP14	19	36831783	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	18575955	36831783	22297200	136	12540											
PSG11	5680	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43529163	43529163	+	Missense_Mutation	SNP	A	A	G	rs1058223	bycluster;byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_002785	exon2	c.T110C	p.M37T	TCAATCATGACTT	.	235	53	175	2	A|0.300;G|0.700	.	G	43529163	A	G	43529163	3	3	100	1	0	0	0	0	1	0	0	0	12654	217	8	2	913	2	PSG11	19	43529163	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	6697380	43529163	15599820	137	12541											
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260419	45260419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BCL3	NM_005178	exon4	c.G665A	p.R222Q	GCCTGCGAGCCCT	.	49	5	39	0	.	848	A	45260419	G	A	45260419	3	1	100	1	0	0	0	0	1	0	0	0	1375	1058	37	1	679	1	BCL3	19	45260419	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	1731256	45260419	13868564	138	12542											
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48945414	48945414	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	GRIN2D	NM_000836	exon12	c.C2448T	p.I816I	TGAGATCGAGATG	.	46	9	58	0	.	156	T	48945414	C	T	48945414	2	4	100	1	0	0	0	0	0	0	0	1	6782	874	31	1		1	GRIN2D	19	48945414	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	3684995	48945414	10183569	139	12543											
MYBPC2	4606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50958840	50958840	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MYBPC2	NM_004533	exon20	c.T2277C	p.P759P	GAGGCCTCCGAAC	.	56	7	60	0	.	67	C	50958840	T	C	50958840	2	2	100	1	0	0	0	0	0	0	0	1	10012	1538	54	2		2	MYBPC2	19	50958840	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	2013426	50958840	8170143	140	12544											
VPS16	64601	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	2842263	2842263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS16	NM_022575	exon9	c.G812T	p.C271F	ACAGGTGCAGCCG	.	23	7	36	0	.	94	T	2842263	G	T	2842263	3	4	100	1	0	0	0	0	1	0	0	0	17190	1319	46	3	846	3	VPS16	20	2842263	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10		2842263	60183257	141	12545	68	2									
VPS16	64601	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	2842264	2842265	+	Missense_Mutation	DNP	CA	CA	TT	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	p.S272C	CAGGTGCAGCCGT	.	22	7	37	0	.	.	TT	2842265	CA	TT	2842264	3	4	100	1	0	0	0	0	1	0	0	0	17190	718	25	3	847	3	VPS16	20	2842264	Missense_Mutation	DNP	CA	TCGA-DD-A4NV-01A-11D-A30V-10	1	2842264	60183256	142	12546	68	2									
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41459179	41459179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DSCAM	NM_001271534	exon22	c.A3886T	p.T1296S	GAGTAGTCACTGT	.	90	14	82	0	.	101	A	41459179	T	A	41459179	3	1	100	1	0	0	0	0	1	0	0	0	4768	1667	58	4	2200	4	DSCAM	21	41459179	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10		41459179	6670716	143	12547											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41684133	41684133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DSCAM	NM_001271534	exon9	c.A1937G	p.D646G	ATATTGTCAATGG	.	135	36	137	0	.	101	C	41684133	T	C	41684133	3	2	100	1	0	0	0	0	1	0	0	0	4768	1667	58	2	4201	2	DSCAM	21	41684133	Missense_Mutation	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	224954	41684133	6445762	144	12548											
C2CD2	25966	broad.mit.edu;bcgsc.ca	37	21	43309317	43309317	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C2CD2	NM_015500	exon14	c.C2007A	p.L669L	CCTGGTGAGGGTG	.	100	5	100	1	.	91	T	43309317	G	T	43309317	2	4	100	1	0	0	0	0	0	0	0	1	2152	1277	45	3		3	C2CD2	21	43309317	Silent	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	1625184	43309317	4820578	145	12549											
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32007130	32007130	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SFI1	NM_001007467	exon23	c.C2256T	p.G752G	CTTAGGCTGTCTG	.	63	14	92	0	.	90	T	32007130	C	T	32007130	2	4	100	1	0	0	0	0	0	0	0	1	14156	811	28	3		3	SFI1	22	32007130	Silent	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		32007130	19297436	146	12550											
GRAP2	9402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40366916	40366916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	GRAP2	NM_004810	exon8	c.G821A	p.R274Q	GAGTGCGGTGGGC	.	41	10	45	0	.	227	A	40366916	G	A	40366916	3	1	100	1	0	0	0	0	1	0	0	0	6754	1116	39	1	847	1	GRAP2	22	40366916	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	8359786	40366916	10937650	147	12551											
POU3F4	5456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	82763684	82763684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	POU3F4	NM_000307	exon1	c.C352T	p.P118S	GCCAGCCCGGCAC	.	151	8	102	0	.	131	T	82763684	C	T	82763684	3	4	100	1	0	0	0	0	1	0	0	0	12277	623	22	3	354	3	POU3F4	23	82763684	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10		82763684	72506876	148	12552											
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	125685427	125685427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DCAF12L1	NM_178470	exon1	c.G1165A	p.A389T	GGGTGGCGGAGGC	.	94	8	73	0	.	132	T	125685427	C	T	125685427	3	4	100	1	0	0	0	0	1	0	0	0	4264	768	27	1	230	1	DCAF12L1	23	125685427	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	42921743	125685427	29585133	149	12553											
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717871	142717871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLITRK4	NM_001184750	exon2	c.C1054A	p.P352T	CTGAAGGGTGTGT	.	106	37	107	0	.	193	T	142717871	G	T	142717871	3	4	100	1	0	0	0	0	1	0	0	0	14745	1232	43	3	1463	3	SLITRK4	23	142717871	Missense_Mutation	SNP	G	TCGA-DD-A4NV-01A-11D-A30V-10	17032444	142717871	12552689	150	12554											
PRRG3	79057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150869170	150869170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PRRG3	NM_024082	exon4	c.C361A	p.L121I	CGGTACCTAGCCA	.	101	11	79	0	.	134	A	150869170	C	A	150869170	3	1	100	1	0	0	0	0	1	0	0	0	12607	680	24	3	371	3	PRRG3	23	150869170	Missense_Mutation	SNP	C	TCGA-DD-A4NV-01A-11D-A30V-10	8151299	150869170	4401390	151	12555											
L1CAM	3897	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153133461	153133461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	L1CAM	NM_000425	exon14	c.T1820C	p.L607S	ACCACCAAGAGCT	.	43	8	35	0	.	138	G	153133461	A	G	153133461	3	3	100	1	0	0	0	0	1	0	0	0	8588	131	5	2	2013	2	L1CAM	23	153133461	Missense_Mutation	SNP	A	TCGA-DD-A4NV-01A-11D-A30V-10	2264291	153133461	2137099	152	12556											
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154158630	154158630	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	F8	NM_000132	exon14	c.A3435G	p.P1145P	TTGCTTTGGACTG	.	127	18	94	0	.	182	C	154158630	T	C	154158630	2	2	100	1	0	0	0	0	0	0	0	1	5350	1799	63	2		2	F8	23	154158630	Silent	SNP	T	TCGA-DD-A4NV-01A-11D-A30V-10	1025169	154158630	1111930	153	12557											
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22310306	22310306	+	Missense_Mutation	SNP	G	G	T	rs201377315	alternate_allele	TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CELA3B	NM_007352	exon5	c.G482T	p.G161V	TCACCGGCTGGGG	.	427	139	426	0	.	91	T	22310306	G	T	22310306	3	4	101	1	0	0	0	0	1	0	0	0	3214	1203	42	3	500	3	CELA3B	1	22310306	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10		22310306	226940315	1	12558											
PUM1	9698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31468064	31468064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PUM1	NM_014676	exon6	c.C724T	p.P242S	CCCTTGGGCCCTG	.	210	75	187	1	.	92	A	31468064	G	A	31468064	3	1	101	1	0	0	0	0	1	0	0	0	12825	1232	43	3	2910	3	PUM1	1	31468064	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	9157758	31468064	217782557	2	12559											
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35852656	35852656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ZMYM4	NM_005095	exon12	c.A1889G	p.Q630R	TGTCTCAGGGCCA	.	59	21	78	0	.	291	G	35852656	A	G	35852656	3	3	101	1	0	0	0	0	1	0	0	0	17699	188	7	2	1935	2	ZMYM4	1	35852656	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	4384592	35852656	213397965	3	12560											
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	99771859	99771859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LPPR4	NM_014839	exon7	c.1585delG	p.G529fs	CGTCCTGGGTCCT	.	99	29	89	0	.	93	-	99771859	G	-	99771859	7	5	101	1	0	1	0	1	0	0	0	0	8927	1348	47	0	1611	0	LPPR4	1	99771859	Frame_Shift_Del	DEL	G	TCGA-DD-A73A-01A-12D-A32G-10	63919203	99771859	149478762	4	12561											
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110086824	110086824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	GPR61	NM_031936	exon2	c.T1180C	p.S394P	TCTGAGTCCTGGG	.	92	26	66	0	.	91	C	110086824	T	C	110086824	3	2	101	1	0	0	0	0	1	0	0	0	6702	1667	58	2	1182	2	GPR61	1	110086824	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	10314965	110086824	139163797	5	12562											
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183184629	183184629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LAMC2	NM_005562	exon3	c.T310A	p.C104S	TGCAGCTGTAAAC	.	62	34	97	0	.	93	A	183184629	T	A	183184629	3	1	101	1	0	0	0	0	1	0	0	0	8615	1580	55	4	320	4	LAMC2	1	183184629	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	73097805	183184629	66065992	6	12563											
FAM129A	116496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184787922	184787922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FAM129A	NM_052966	exon9	c.G1023T	p.E341D	CACACTCTCCAAG	.	69	35	104	0	.	94	A	184787922	C	A	184787922	3	1	101	1	0	0	0	0	1	0	0	0	5436	912	32	3	1787	3	FAM129A	1	184787922	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	1603293	184787922	64462699	7	12564											
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211840446	211840446	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NEK2	NM_001204183	exon7	c.T1113A	p.G371G	TCTCATACCTGGA	.	241	67	214	0	.	765	T	211840446	A	T	211840446	2	4	101	1	0	0	0	0	0	0	0	1	10324	405	14	4		4	NEK2	1	211840446	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	27052524	211840446	37410175	8	12565											
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248112914	248112914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OR2L8	NM_001001963	exon1	c.C755T	p.A252V	ACTATGCACCTTT	.	170	46	204	0	.	70	T	248112914	C	T	248112914	3	4	101	1	0	0	0	0	1	0	0	0	11009	710	25	3	757	3	OR2L8	1	248112914	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	36272468	248112914	1137707	9	12566											
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9574031	9574031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CPSF3	NM_016207	exon6	c.A551G	p.E184G	GACAAGAAGATAG	.	357	107	343	0	.	153	G	9574031	A	G	9574031	3	3	101	1	0	0	0	0	1	0	0	0	3826	246	9	2	573	2	CPSF3	2	9574031	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10		9574031	233625342	10	12567											
THADA	63892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	43801892	43801893	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	THADA	NM_001083953	exon11	c.1312_1313insTT	p.V438fs	ATTCCACAAAGAA	.	96	32	104	0	.	228	AA	43801893	-	AA	43801892	7	5	101	1	0	1	1	0	0	0	0	0	15837	478	17	0	4661	0	THADA	2	43801892	Frame_Shift_Ins	INS	-	TCGA-DD-A73A-01A-12D-A32G-10	34227861	43801892	199397481	11	12568											
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135206375	135206375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MGAT5	NM_002410	exon16	c.A2183T	p.D728V	GCCGGGACTTCAT	.	126	33	130	0	.	93	T	135206375	A	T	135206375	3	4	101	1	0	0	0	0	1	0	0	0	9548	275	10	4	2245	4	MGAT5	2	135206375	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	91404483	135206375	107992998	12	12569											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189856233	189856233	+	Silent	SNP	C	C	T	rs138569287		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	COL3A1	NM_000090	exon12	c.C873T	p.G291G	TCCAGGCGAAAAT	.	256	74	270	0	C|1.000;T|0.000	581	T	189856233	C	T	189856233	2	4	101	1	0	0	0	0	0	0	0	1	3688	755	27	1		1	COL3A1	2	189856233	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	54649858	189856233	53343140	13	12570											
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201399894	201399894	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SGOL2	NM_001160046	exon3	c.G309C	p.L103F	TAACTTGGTATGT	.	335	71	364	0	.	94	C	201399894	G	C	201399894	3	2	101	1	0	0	0	0	1	0	0	0	14217	1362	47	4	315	4	SGOL2	2	201399894	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	11543661	201399894	41799479	14	12571											
PLCD4	84812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219499332	219499332	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PLCD4	NM_032726	exon13	c.A1875C	p.K625N	TTTCAAAGCCCAG	.	146	50	152	0	.	661	C	219499332	A	C	219499332	3	2	101	1	0	0	0	0	1	0	0	0	12033	69	3	5	1921	5	PLCD4	2	219499332	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	18099438	219499332	23700041	15	12572											
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242194526	242194526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	HDLBP	NM_005336	exon9	c.C1128G	p.H376Q	GAAACGGTGAAGC	.	73	21	75	0	.	290	C	242194526	G	C	242194526	3	2	101	1	0	0	0	0	1	0	0	0	7025	1252	44	4	2758	4	HDLBP	2	242194526	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	22695194	242194526	1004847	16	12573											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274910	41274910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CTNNB1	NM_001098209	exon8	c.A1160T	p.N387I	TCAGGAATCTTTC	.	152	45	126	0	.	24361	T	41274910	A	T	41274910	3	4	101	1	0	0	0	0	1	0	0	0	4016	101	4	4	1186	4	CTNNB1	3	41274910	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10		41274910	156747520	17	12574											
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42781149	42781149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CCDC13	NM_144719	exon9	c.G1141A	p.D381N	GCTCGTCATCATG	.	105	40	117	0	.	91	T	42781149	C	T	42781149	3	4	101	1	0	0	0	0	1	0	0	0	2765	826	29	3	1038	3	CCDC13	3	42781149	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	1506239	42781149	155241281	18	12575											
TRAIP	10293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49866583	49866584	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TRAIP	NM_005879	exon15	c.1362_1363del	p.454_455del	AAGGCACTGTCTT	.	209	79	199	0	.	849	-	49866584	CT	-	49866583	7	5	101	1	0	1	0	1	0	0	0	0	16445	565	20	0	50	0	TRAIP	3	49866583	Frame_Shift_Del	DEL	CT	TCGA-DD-A73A-01A-12D-A32G-10	7085434	49866583	148155847	19	12576											
RRP9	9136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51969471	51969471	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	RRP9	NM_004704	exon10	c.G858A	p.V286V	TGCAGCCACAGCG	.	83	32	78	0	.	154	T	51969471	C	T	51969471	2	4	101	1	0	0	0	0	0	0	0	1	13691	581	21	3		3	RRP9	3	51969471	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	2102888	51969471	146052959	20	12577											
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56468631	56468631	+	Silent	SNP	G	G	T	rs141688594	by1000genomes	TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ERC2	NM_015576	exon2	c.C405A	p.V135V	GGAGGGGACCTGG	.	148	50	129	0	G|0.999;T|0.000	24	T	56468631	G	T	56468631	2	4	101	1	0	0	0	0	0	0	0	1	5211	1161	41	3		3	ERC2	3	56468631	Silent	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	4499160	56468631	141553799	21	12578											
PDHB	5162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	58419520	58419520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PDHB	NM_000925	exon1	c.G17A	p.G6D	ACCAAGCCAGACA	.	140	29	104	0	.	91	T	58419520	C	T	58419520	3	4	101	1	0	0	0	0	1	0	0	0	11666	739	26	3	1102	3	PDHB	3	58419520	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	1950889	58419520	139602910	22	12579											
UMPS	7372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124449404	124449404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	UMPS	NM_000373	exon1	c.A86C	p.K29T	TGCTGAAGAGCGG	.	180	67	200	1	.	227	C	124449404	A	C	124449404	3	2	101	1	0	0	0	0	1	0	0	0	16978	72	3	5	88	5	UMPS	3	124449404	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	66029884	124449404	73573026	23	12580											
COL6A6	131873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130368056	130368056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	COL6A6	NM_001102608	exon32	c.C5383A	p.P1795T	AGCTGCCCCGTGG	.	179	64	175	1	.	76	A	130368056	C	A	130368056	3	1	101	1	0	0	0	0	1	0	0	0	3703	623	22	3	5509	3	COL6A6	3	130368056	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	5918652	130368056	67654374	24	12581											
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135825091	135825091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PPP2R3A	NM_002718	exon13	c.T3256A	p.W1086R	TCAGACTGGGACC	.	107	25	82	0	.	662	A	135825091	T	A	135825091	3	1	101	1	0	0	0	0	1	0	0	0	12388	1580	55	4	3438	4	PPP2R3A	3	135825091	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	5457035	135825091	62197339	25	12582											
LIPH	200879	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185234879	185234879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LIPH	NM_139248	exon7	c.A958T	p.T320S	CAGCTGTGTCAAA	.	111	29	91	1	.	92	A	185234879	T	A	185234879	3	1	101	1	0	0	0	0	1	0	0	0	8824	1696	59	4	413	4	LIPH	3	185234879	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	49409788	185234879	12787551	26	12583											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20525746	20525746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLIT2	NM_004787	exon14	c.C1384T	p.R462C	CCCCGCCGCCTGG	.	92	31	118	0	.	521	T	20525746	C	T	20525746	3	4	101	1	0	0	0	0	1	0	0	0	14740	652	23	1	1438	1	SLIT2	4	20525746	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		20525746	170628530	27	12584											
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83626515	83626515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SCD5	NM_024906	exon2	c.G284A	p.R95H	CACAAGCGATGGG	.	168	47	203	0	.	91	T	83626515	C	T	83626515	3	4	101	1	0	0	0	0	1	0	0	0	13887	768	27	1	930	1	SCD5	4	83626515	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	63100769	83626515	107527761	28	12585											
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90856220	90856220	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MMRN1	NM_007351	exon6	c.T1389C	p.I463I	TCACATTGTGAAT	.	269	97	264	0	.	94	C	90856220	T	C	90856220	2	2	101	1	0	0	0	0	0	0	0	1	9670	1800	63	2		2	MMRN1	4	90856220	Silent	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	7229705	90856220	100298056	29	12586											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123097024	123097040	+	Frame_Shift_Del	DEL	ATTTTTCGGTGGTGGAA	ATTTTTCGGTGGTGGAA	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	ATTTTTCGGTGGTGGAA	ATTTTTCGGTGGTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KIAA1109	NM_015312	exon4	c.313_329del	p.105_110del	TTCATCATTTTTC	.	250	26	361	0	.	80	-	123097040	ATTTTTCGGTGGTGGAA	-	123097024	7	5	101	1	0	1	0	1	0	0	0	0	8208	217	8	0	327	0	KIAA1109	4	123097024	Frame_Shift_Del	DEL	ATTTTTCGGTGGTGGAA	TCGA-DD-A73A-01A-12D-A32G-10	32240804	123097024	68057252	30	12587											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu	37	4	134072769	134072769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDH10	NM_032961	exon1	c.G1474C	p.E492Q	CGGGATGAGGGCG	.	71	4	63	0	.	92	C	134072769	G	C	134072769	3	2	101	1	0	0	0	0	1	0	0	0	11507	1291	45	4	1476	4	PCDH10	4	134072769	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	10975745	134072769	57081507	31	12588											
POU4F2	5458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147561765	147561765	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	POU4F2	NM_004575	exon2	c.G1035A	p.K345K	GGAGAAGAAGCGC	.	74	27	80	0	.	135	A	147561765	G	A	147561765	2	1	101	1	0	0	0	0	0	0	0	1	12279	933	33	3		3	POU4F2	4	147561765	Silent	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	13488996	147561765	43592511	32	12589											
FGA	2243	hgsc.bcm.edu;broad.mit.edu	37	4	155507454	155507455	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FGA	NM_000508	exon5	c.1127_1128insCTG	p.E376delinsAE	GAGCTCTCAGAGG	.	87	22	98	0	.	93	CAG	155507455	-	CAG	155507454	7	5	101	1	0	1	1	0	0	0	0	0	5830	1551	54	0	1525	0	FGA	4	155507454	In_Frame_Ins	INS	-	TCGA-DD-A73A-01A-12D-A32G-10	7945689	155507454	35646822	33	12590											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175897952	175897952	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ADAM29	NM_001130703	exon4	c.C1276T	p.L426L	TGCTGTCTGTCAA	.	101	38	120	0	.	729	T	175897952	C	T	175897952	2	4	101	1	0	0	0	0	0	0	0	1	247	912	32	3		3	ADAM29	4	175897952	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	20390498	175897952	15256324	34	12591											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	3600047	3600047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	IRX1	NM_024337	exon2	c.G985A	p.A329T	GACGGTGCGCCCA	.	74	28	54	0	.	228	A	3600047	G	A	3600047	3	1	101	1	0	0	0	0	1	0	0	0	7843	1319	46	3	991	3	IRX1	5	3600047	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10		3600047	177315213	35	12592											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37008169	37008169	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NIPBL	NM_015384	exon19	c.T4299C	p.C1433C	GTTGTGTGCCATT	.	241	77	248	0	.	293	C	37008169	T	C	37008169	2	2	101	1	0	0	0	0	0	0	0	1	10428	1702	59	2		2	NIPBL	5	37008169	Silent	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	33408122	37008169	143907091	36	12593											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71493190	71493190	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MAP1B	NM_005909	exon5	c.C4008T	p.Y1336Y	ACCTTACTATCAA	.	109	36	107	0	.	155	T	71493190	C	T	71493190	2	4	101	1	0	0	0	0	0	0	0	1	9228	576	20	3		3	MAP1B	5	71493190	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	34485021	71493190	109422070	37	12594											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79026634	79026634	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CMYA5	NM_153610	exon2	c.C2046T	p.D682D	AGGAGACGAGGCC	.	148	6	106	0	.	77	T	79026634	C	T	79026634	2	4	101	1	0	0	0	0	0	0	0	1	3590	535	19	1		1	CMYA5	5	79026634	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	7533444	79026634	101888626	38	12595											
ACOT12	134526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80626218	80626218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ACOT12	NM_130767	exon15	c.T1663G	p.F555V	TTTAAAATGTGCT	.	139	76	109	0	.	92	C	80626218	A	C	80626218	3	2	101	1	0	0	0	0	1	0	0	0	150	101	4	5	8	5	ACOT12	5	80626218	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	1599584	80626218	100289042	39	12596											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89924641	89924641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	GPR98	NM_032119	exon8	c.C1501A	p.P501T	AGCGAGCCAGCGG	.	145	42	88	0	.	103	A	89924641	C	A	89924641	3	1	101	1	0	0	0	0	1	0	0	0	6721	739	26	3	1531	3	GPR98	5	89924641	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	9298423	89924641	90990619	40	12597											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102360991	102360991	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PAM	NM_001177306	exon23	c.T2642A	p.L881Q	TCCTGCTGGCCAT	.	235	63	193	0	.	68	A	102360991	T	A	102360991	3	1	101	1	0	0	0	0	1	0	0	0	11412	1580	55	4	2732	4	PAM	5	102360991	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	12436350	102360991	78554269	41	12598											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140574371	140574371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDHB10	NM_018930	exon1	c.A2246T	p.Q749L	TGTCCCAGAGCTA	.	126	25	104	0	.	92	T	140574371	A	T	140574371	3	4	101	1	0	0	0	0	1	0	0	0	11535	188	7	4	2248	4	PCDHB10	5	140574371	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	38213380	140574371	40340889	42	12599											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140811741	140811741	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDHGA12	NM_032094	exon1	c.T1415A	p.V472D	CCCTCGTCTCTGT	.	230	106	178	0	.	27	A	140811741	T	A	140811741	3	1	101	1	0	0	0	0	1	0	0	0	11553	1667	58	4	1417	4	PCDHGA12	5	140811741	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	237370	140811741	40103519	43	12600											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150886868	150886868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FAT2	NM_001447	exon22	c.G12364T	p.A4122S	CAGAGGCCTTGCT	.	185	32	151	0	.	96	A	150886868	C	A	150886868	3	1	101	1	0	0	0	0	1	0	0	0	5690	739	26	3	693	3	FAT2	5	150886868	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	10075127	150886868	30028392	44	12601											
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154173763	154173763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LARP1	NM_015315	exon7	c.C942G	p.S314R	TGTCAGCAGCACC	.	390	102	297	0	.	94	G	154173763	C	G	154173763	3	3	101	1	0	0	0	0	1	0	0	0	8628	709	25	4	968	4	LARP1	5	154173763	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	3286895	154173763	26741497	45	12602											
WDR46	9277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33254618	33254618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	WDR46	NM_005452	exon10	c.T1069A	p.C357S	GATGACAGAGAAT	.	114	41	121	0	.	68	T	33254618	A	T	33254618	3	4	101	1	0	0	0	0	1	0	0	0	17296	188	7	4	787	4	WDR46	6	33254618	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10		33254618	137860449	46	12603											
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84910598	84910598	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KIAA1009	NM_014895	exon9	c.T744A	p.S248S	TGCAACAGAGTCT	.	113	41	106	0	.	91	T	84910598	A	T	84910598	2	4	101	1	0	0	0	0	0	0	0	1	8203	175	7	4		4	KIAA1009	6	84910598	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	51655980	84910598	86204469	47	12604											
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134494621	134494621	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SGK1	NM_001143676	exon6	c.C597T	p.I199I	CTTTCCGATCACT	.	157	36	158	0	.	981	A	134494621	G	A	134494621	2	1	101	1	0	0	0	0	0	0	0	1	14207	1048	37	1		1	SGK1	6	134494621	Silent	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	49584023	134494621	36620446	48	12605											
KATNA1	11104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	149916182	149916182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KATNA1	NM_007044	exon11	c.G1466C	p.G489A	CATGATCCAAACT	.	66	17	110	0	.	91	G	149916182	C	G	149916182	3	3	101	1	0	0	0	0	1	0	0	0	7984	855	30	4	13	4	KATNA1	6	149916182	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	15421561	149916182	21198885	49	12606											
PARK2	5071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	162206857	162206857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PARK2	NM_004562	exon7	c.A818G	p.N273S	CGATCATTGAGTC	.	156	46	156	0	.	91	C	162206857	T	C	162206857	3	2	101	1	0	0	0	0	1	0	0	0	11449	1493	52	2	603	2	PARK2	6	162206857	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	12290675	162206857	8908210	50	12607											
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55225380	55225380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	EGFR	NM_005228	exon11	c.C1232G	p.P411R	CTTGGCCTGAAAA	.	120	43	147	0	.	44910	G	55225380	C	G	55225380	3	3	101	1	0	0	0	0	1	0	0	0	4967	681	24	4	1285	4	EGFR	7	55225380	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		55225380	103913283	51	12608											
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21842213	21842213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	XPO7	NM_015024	exon12	c.A1334T	p.Q445L	TGGACCAGCTGTC	.	75	39	107	0	.	273	T	21842213	A	T	21842213	3	4	101	1	0	0	0	0	1	0	0	0	17446	188	7	4	1432	4	XPO7	8	21842213	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10		21842213	124521809	52	12609											
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	62593583	62593583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ASPH	NM_001164756	exon4	c.T311C	p.I104T	TCATAGATTCCTA	.	316	94	324	0	.	93	G	62593583	A	G	62593583	3	3	101	1	0	0	0	0	1	0	0	0	1053	333	12	2	2769	2	ASPH	8	62593583	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	40751370	62593583	83770439	53	12610											
LY96	23643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	74917085	74917085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	LY96	NM_015364	exon2	c.G167T	p.R56I	TGAAAAGATCCAA	.	389	124	355	1	.	90	T	74917085	G	T	74917085	3	4	101	1	0	0	0	0	1	0	0	0	9102	942	33	3	173	3	LY96	8	74917085	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	12323502	74917085	71446937	54	12611											
OSR2	116039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99961205	99961205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OSR2	NM_053001	exon2	c.C25T	p.P9S	CCAGCGCCCATCC	.	102	21	72	0	.	1	T	99961205	C	T	99961205	3	4	101	1	0	0	0	0	1	0	0	0	11294	739	26	3	27	3	OSR2	8	99961205	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	25044120	99961205	46402817	55	12612											
KLF10	7071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103663550	103663550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KLF10	NM_005655	exon3	c.A1010G	p.N337S	GTGCCATTCGGGC	.	233	38	157	0	.	226	C	103663550	T	C	103663550	3	2	101	1	0	0	0	0	1	0	0	0	8338	1493	52	2	440	2	KLF10	8	103663550	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	3702345	103663550	42700472	56	12613											
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116632123	116632123	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TRPS1	NM_014112	exon3	c.A202C	p.N68H	TATGATTTAGTTC	.	212	130	117	0	.	229	G	116632123	T	G	116632123	3	3	101	1	0	0	0	0	1	0	0	0	16590	1841	64	5	3702	5	TRPS1	8	116632123	Missense_Mutation	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	12968573	116632123	29731899	57	12614											
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143996179	143996179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CYP11B2	NM_000498	exon4	c.G741T	p.W247C	GCTGATCCAGCGA	.	457	103	341	0	.	90	A	143996179	C	A	143996179	3	1	101	1	0	0	0	0	1	0	0	0	4146	856	30	3	794	3	CYP11B2	8	143996179	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	27364056	143996179	2367843	58	12615	69	2									
CYP11B2	1585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143996180	143996180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CYP11B2	NM_000498	exon4	c.G740T	p.W247L	CTGATCCAGCGAG	.	461	104	338	1	.	90	A	143996180	C	A	143996180	3	1	101	1	0	0	0	0	1	0	0	0	4146	595	21	3	795	3	CYP11B2	8	143996180	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	1	143996180	2367842	59	12616	69	2									
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	396809	396809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	DOCK8	NM_203447	exon25	c.C2995G	p.H999D	CACGTACATAACA	.	100	40	111	0	.	517	G	396809	C	G	396809	3	3	101	1	0	0	0	0	1	0	0	0	4693	478	17	4	3093	4	DOCK8	9	396809	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		396809	140816622	60	12617											
NACC2	138151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138903604	138903604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NACC2	NM_144653	exon6	c.G1522T	p.A508S	TCAGAGCCACGAT	.	36	13	31	0	.	90	A	138903604	C	A	138903604	3	1	101	1	0	0	0	0	1	0	0	0	10136	739	26	3	245	3	NACC2	9	138903604	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	138506795	138903604	2309827	61	12618											
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45799015	45799015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OR13A1	NM_001004297	exon4	c.G856A	p.A286T	TCCCTGCGCTGTA	.	90	8	87	0	.	68	T	45799015	C	T	45799015	3	4	101	1	0	0	0	0	1	0	0	0	10933	768	27	1	134	1	OR13A1	10	45799015	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		45799015	89735732	62	12619											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568592	55568592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCDH15	.	.	.	.	TACCTGATTCTGA	.	210	58	250	0	.	193	G	55568592	A	G	55568592	3	3	101	1	0	0	0	0	1	0	0	0	11511	333	12	2	698	2	PCDH15	10	55568592	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	9769577	55568592	79966155	63	12620											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70661161	70661161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	DDX50	NM_024045	exon1	c.G21T	p.W7C	CCTCTGGGGGGAC	.	196	73	206	0	.	91	T	70661161	G	T	70661161	3	4	101	1	0	0	0	0	1	0	0	0	4368	1241	43	3	23	3	DDX50	10	70661161	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	15092569	70661161	64873586	64	12621											
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133946888	133946888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	JAKMIP3	NM_001105521	exon3	c.G706T	p.A236S	GGGCATGCTCAGA	.	73	19	90	0	.	23	T	133946888	G	T	133946888	3	4	101	1	0	0	0	0	1	0	0	0	7942	1319	46	3	716	3	JAKMIP3	10	133946888	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	63285727	133946888	1587859	65	12622											
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8732433	8732433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ST5	NM_213618	exon11	c.G2311C	p.E771Q	CATCTTCCCCAGT	.	53	14	59	0	.	227	G	8732433	C	G	8732433	3	3	101	1	0	0	0	0	1	0	0	0	15219	864	30	4	1142	4	ST5	11	8732433	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		8732433	126274083	66	12623											
PATL1	219988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59416963	59416963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PATL1	NM_152716	exon14	c.T1705G	p.L569V	CCCTTAAGTTGTC	.	203	67	222	0	.	1	C	59416963	A	C	59416963	3	2	101	1	0	0	0	0	1	0	0	0	11475	69	3	5	631	5	PATL1	11	59416963	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	50684530	59416963	75589553	67	12624											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6145595	6145601	+	Frame_Shift_Del	DEL	CTCCTTG	CTCCTTG	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	CTCCTTG	CTCCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	VWF	NM_000552	exon19	c.2499_2505del	p.833_835del	GGCATACTCCTTG	.	78	19	83	0	.	163	-	6145601	CTCCTTG	-	6145595	7	5	101	1	0	1	0	1	0	0	0	0	17243	564	20	0	6072	0	VWF	12	6145595	Frame_Shift_Del	DEL	CTCCTTG	TCGA-DD-A73A-01A-12D-A32G-10		6145595	127706300	68	12625											
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45803160	45803160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ANO6	NM_001204803	exon17	c.G1964A	p.G655E	TAATTGGGCGATT	.	77	23	83	0	.	516	A	45803160	G	A	45803160	3	1	101	1	0	0	0	0	1	0	0	0	701	1232	43	3	1983	3	ANO6	12	45803160	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	39657565	45803160	88048735	69	12626											
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53875041	53875041	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MAP3K12	NM_001193511	exon14	c.A2604T	p.S868S	ACAGTCTGAGTCC	.	117	54	91	0	.	604	A	53875041	T	A	53875041	2	1	101	1	0	0	0	0	0	0	0	1	9246	1567	55	4		4	MAP3K12	12	53875041	Silent	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10	8071881	53875041	79976854	70	12627											
R3HDM2	22864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57660557	57660557	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	R3HDM2	NM_014925	exon17	c.T2046A	p.S682S	AGAGGGAGACTGA	.	52	15	53	0	.	92	T	57660557	A	T	57660557	2	4	101	1	0	0	0	0	0	0	0	1	12888	291	11	4		4	R3HDM2	12	57660557	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	3785516	57660557	76191338	71	12628											
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70732260	70732260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CNOT2	NM_001199302	exon11	c.A938G	p.D313G	GTACAGATGGACC	.	194	57	161	0	.	226	G	70732260	A	G	70732260	3	3	101	1	0	0	0	0	1	0	0	0	3619	333	12	2	972	2	CNOT2	12	70732260	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	13071703	70732260	63119635	72	12629											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117698357	117698357	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NOS1	NM_000620	exon14	c.G2280C	p.A760A	GATGGTCGCTTTC	.	99	31	110	0	.	154	G	117698357	C	G	117698357	2	3	101	1	0	0	0	0	0	0	0	1	10541	871	31	4		4	NOS1	12	117698357	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	46966097	117698357	16153538	73	12630											
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25467000	25467000	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CENPJ	NM_018451	exon10	c.A2997G	p.L999L	CTGTTTTAAAGTC	.	161	54	144	0	.	92	C	25467000	T	C	25467000	2	2	101	1	0	0	0	0	0	0	0	1	3234	1751	61	2		2	CENPJ	13	25467000	Silent	SNP	T	TCGA-DD-A73A-01A-12D-A32G-10		25467000	89702878	74	12631											
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25826056	25826056	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MTMR6	NM_004685	exon12	c.T1413A	p.P471P	GTAGAGAGGATTT	.	104	33	83	0	.	94	T	25826056	A	T	25826056	2	4	101	1	0	0	0	0	0	0	0	1	9947	291	11	4		4	MTMR6	13	25826056	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	359056	25826056	89343822	75	12632											
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24567763	24567763	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PCK2	NM_001018073	exon4	c.C540T	p.D180D	CACTGACTCAGCC	.	99	29	82	0	.	227	T	24567763	C	T	24567763	2	4	101	1	0	0	0	0	0	0	0	1	11582	564	20	3		3	PCK2	14	24567763	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		24567763	82781777	76	12633											
SLC25A29	123096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	100758804	100758804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLC25A29	NM_001039355	exon4	c.G728A	p.G243D	CGCCAGCCCTCGG	.	30	9	13	0	.	91	T	100758804	C	T	100758804	3	4	101	1	0	0	0	0	1	0	0	0	14492	739	26	3	187	3	SLC25A29	14	100758804	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	76191041	100758804	6590736	77	12634											
PAK6	56924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40564637	40564637	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	PAK6	NM_001128629	exon5	c.C1071T	p.A357A	GCACGCCCAGATC	.	62	4	59	0	.	996	T	40564637	C	T	40564637	2	4	101	1	0	0	0	0	0	0	0	1	11404	610	22	3		3	PAK6	15	40564637	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		40564637	61966755	78	12635											
CASC4	113201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44671957	44671957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CASC4	NM_138423	exon7	c.G872T	p.G291V	CAACTGGACAACC	.	111	40	100	1	.	91	T	44671957	G	T	44671957	3	4	101	1	0	0	0	0	1	0	0	0	2662	1174	41	3	898	3	CASC4	15	44671957	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	4107320	44671957	57859435	79	12636											
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92459624	92459624	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLCO3A1	NM_013272	exon2	c.G582T	p.V194V	CCCTGTGCAGCCC	.	72	26	65	0	.	91	T	92459624	G	T	92459624	2	4	101	1	0	0	0	0	0	0	0	1	14728	1306	46	3		3	SLCO3A1	15	92459624	Silent	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	47787667	92459624	10071768	80	12637											
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99459327	99459327	+	Missense_Mutation	SNP	G	G	A	rs143193096		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	IGF1R	NM_000875	exon9	c.G1963A	p.G655S	CAGGACGGCTACC	.	170	53	183	0	G|1.000;A|0.000	1490	A	99459327	G	A	99459327	3	1	101	1	0	0	0	0	1	0	0	0	7571	1116	39	1	1997	1	IGF1R	15	99459327	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	6999703	99459327	3072065	81	12638											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24816121	24816121	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TNRC6A	NM_014494	exon13	c.C3933A	p.A1311A	CCAGGCCCTTGGC	.	189	55	160	0	.	92	A	24816121	C	A	24816121	2	1	101	1	0	0	0	0	0	0	0	1	16337	610	22	3		3	TNRC6A	16	24816121	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		24816121	65538632	82	12639											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	64984770	64984770	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CDH11	NM_001797	exon12	c.C1794T	p.N598N	TGCCCCGTTCACG	.	62	22	74	0	.	852	A	64984770	G	A	64984770	2	1	101	1	0	0	0	0	0	0	0	1	3097	1136	40	1		1	CDH11	16	64984770	Silent	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	40168649	64984770	25369983	83	12640											
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69973254	69973254	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	WWP2	NM_001270454	exon23	c.A2451G	p.G817G	CAACGGACCACAG	.	81	28	97	0	.	658	G	69973254	A	G	69973254	2	3	101	1	0	0	0	0	0	0	0	1	17413	262	10	2		2	WWP2	16	69973254	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	4988484	69973254	20381499	84	12641											
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77859321	77859321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	VAT1L	NM_020927	exon3	c.G542A	p.G181E	GGGAAGGGATGTC	.	108	34	146	0	.	90	A	77859321	G	A	77859321	3	1	101	1	0	0	0	0	1	0	0	0	17127	1232	43	3	552	3	VAT1L	16	77859321	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	7886067	77859321	12495432	85	12642											
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87788816	87788816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	KLHDC4	NM_001184856	exon4	c.G353T	p.R118M	CAGCGCCTCGGAG	.	161	55	181	0	.	182	A	87788816	C	A	87788816	3	1	101	1	0	0	0	0	1	0	0	0	8358	681	24	3	1241	3	KLHDC4	16	87788816	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	9929495	87788816	2565937	86	12643											
ZNF18	7566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11881942	11881942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ZNF18	NM_144680	exon9	c.T982G	p.F328V	TGAAGAAGCCCCT	.	79	22	73	0	.	90	C	11881942	A	C	11881942	3	2	101	1	0	0	0	0	1	0	0	0	17744	72	3	5	671	5	ZNF18	17	11881942	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10		11881942	69313268	87	12644											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18025025	18025025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MYO15A	NM_016239	exon2	c.G2911T	p.V971L	GGCCCTGTGCCAT	.	143	54	147	0	.	97	T	18025025	G	T	18025025	3	4	101	1	0	0	0	0	1	0	0	0	10063	1377	48	3	2913	3	MYO15A	17	18025025	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	6143083	18025025	63170185	88	12645											
SLFN11	91607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	33679758	33679758	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SLFN11	NM_152270	exon5	c.G2323T	p.G775X	AGGTTCCCTGAAC	.	108	26	121	0	.	159	A	33679758	C	A	33679758	4	1	101	1	0	0	0	0	0	1	0	0	14733	632	22	3	386	3	SLFN11	17	33679758	Nonsense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	15654733	33679758	47515452	89	12646											
CCL3	6348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34416065	34416065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	CCL3	NM_002983	exon3	c.G232A	p.E78K	ACTCCTCACTGGG	.	449	124	488	0	.	90	T	34416065	C	T	34416065	3	4	101	1	0	0	0	0	1	0	0	0	2901	835	29	3	50	3	CCL3	17	34416065	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	736307	34416065	46779145	90	12647											
GNGT2	2793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47284155	47284155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	GNGT2	NM_031498	exon4	c.T174C	p.N58N	GAAGGGATTCTTG	.	166	59	167	0	.	227	G	47284155	A	G	47284155	2	3	101	1	0	0	0	0	0	0	0	1	6534	330	12	2		2	GNGT2	17	47284155	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	12868090	47284155	33911055	91	12648											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71199899	71199899	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	COG1	NM_018714	exon9	c.C2349T	p.A783A	AGCTGCCTATGAG	.	173	59	157	0	.	91	T	71199899	C	T	71199899	2	4	101	1	0	0	0	0	0	0	0	1	3657	668	24	3		3	COG1	17	71199899	Silent	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	23915744	71199899	9995311	92	12649											
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702858	48702858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MEX3C	NM_016626	exon2	c.G1843C	p.E615Q	TAACCTCATTCTC	.	185	70	162	0	.	659	G	48702858	C	G	48702858	3	3	101	1	0	0	0	0	1	0	0	0	9511	835	29	4	140	4	MEX3C	18	48702858	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10		48702858	29374390	93	12650											
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15918464	15918464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OR10H1	NM_013940	exon1	c.C384A	p.H128Q	CAGGGGGTGGCAG	.	170	63	133	0	.	68	T	15918464	G	T	15918464	3	4	101	1	0	0	0	0	1	0	0	0	10905	1252	44	3	576	3	OR10H1	19	15918464	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10		15918464	43210519	94	12651											
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17835870	17835870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MAP1S	NM_018174	exon4	c.C316G	p.L106V	AACCTTCTGTTGG	.	160	55	176	0	.	90	G	17835870	C	G	17835870	3	3	101	1	0	0	0	0	1	0	0	0	9234	912	32	4	330	4	MAP1S	19	17835870	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	1917406	17835870	41293113	95	12652											
ANKRD27	84079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33110252	33110252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ANKRD27	NM_032139	exon20	c.T1921C	p.S641P	TGATGGAGTCCAC	.	59	16	55	0	.	95	G	33110252	A	G	33110252	3	3	101	1	0	0	0	0	1	0	0	0	655	304	11	2	1271	2	ANKRD27	19	33110252	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	15274382	33110252	26018731	96	12653											
OPA3	80207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46032587	46032587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	OPA3	NM_001017989	exon2	c.C270A	p.F90L	GGTGATGAAGATG	.	74	18	113	0	.	68	T	46032587	G	T	46032587	3	4	101	1	0	0	0	0	1	0	0	0	10872	1281	45	3	276	3	OPA3	19	46032587	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	12922335	46032587	13096396	97	12654											
FIZ1	84922	broad.mit.edu;mdanderson.org	37	19	56104771	56104771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FIZ1	NM_032836	exon3	c.C536T	p.A179V	AGACCCGCGCCTG	.	15	7	15	0	.	90	A	56104771	G	A	56104771	3	1	101	1	0	0	0	0	1	0	0	0	5900	1087	38	1	958	1	FIZ1	19	56104771	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	10072184	56104771	3024212	98	12655											
ZNF552	79818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58319697	58319697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	ZNF552	NM_024762	exon3	c.T935C	p.I312T	TGTGCAATGAGGT	.	94	31	91	0	.	90	G	58319697	A	G	58319697	3	3	101	1	0	0	0	0	1	0	0	0	17981	101	4	2	292	2	ZNF552	19	58319697	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	2214926	58319697	809286	99	12656											
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58449053	58449053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	SYCP2	NM_014258	exon34	c.C3413T	p.S1138L	TAAGGTGATATAG	.	127	36	161	0	.	525	A	58449053	G	A	58449053	3	1	101	1	0	0	0	0	1	0	0	0	15429	1294	45	3	1223	3	SYCP2	20	58449053	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10		58449053	4576467	100	12657											
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10906950	10906950	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TPTE	NM_199261	exon24	c.1611delT	p.F537fs	CTCGCCAAAAAGT	.	340	43	329	0	.	344	-	10906950	A	-	10906950	7	5	101	1	0	1	0	1	0	0	0	0	16427	127	5	0	48	0	TPTE	21	10906950	Frame_Shift_Del	DEL	A	TCGA-DD-A73A-01A-12D-A32G-10		10906950	37222945	101	12658	70	2									
TPTE	7179	hgsc.bcm.edu;bcgsc.ca	37	21	10906954	10906954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	TPTE	NM_199261	exon24	c.T1607A	p.L536H	CCAAAAAGTATCT	.	350	44	344	0	.	344	T	10906954	A	T	10906954	3	4	101	1	0	0	0	0	1	0	0	0	16427	72	3	4	52	4	TPTE	21	10906954	Missense_Mutation	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	4	10906954	37222941	102	12659	70	2									
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	11049587	11049587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	.	NM_182481	exon4	c.C314T	p.A105V	TCCCGGGCTGTCG	.	564	31	473	0	.	.	A	11049587	G	A	11049587	3	1	101	1	0	0	0	0	1	0	0	0	1293	1203	42	3	19	3	BAGE3	21	11049587	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10	142633	11049587	37080308	103	12660											
USP16	10600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30411352	30411352	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	USP16	NM_006447	exon8	c.A738G	p.P246P	GGAACCATTAGAA	.	109	31	127	1	.	659	G	30411352	A	G	30411352	2	3	101	1	0	0	0	0	0	0	0	1	17044	204	8	2		2	USP16	21	30411352	Silent	SNP	A	TCGA-DD-A73A-01A-12D-A32G-10	19361765	30411352	17718543	104	12661											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5810976	5810976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	NLGN4X	NM_181332	exon6	c.C2333T	p.T778I	GTGATGGTGTTTG	.	140	73	179	0	.	195	A	5810976	G	A	5810976	3	1	101	1	0	0	0	0	1	0	0	0	10464	1261	44	3	121	3	NLGN4X	23	5810976	Missense_Mutation	SNP	G	TCGA-DD-A73A-01A-12D-A32G-10		5810976	149459584	105	12662											
MSL3	10943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11783626	11783626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	MSL3	NM_078628	exon9	c.C949A	p.P317T	TTGAATCCATCCA	.	77	58	87	0	.	131	A	11783626	C	A	11783626	3	1	101	1	0	0	0	0	1	0	0	0	9879	855	30	3	983	3	MSL3	23	11783626	Missense_Mutation	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	5972650	11783626	143486934	106	12663											
FANCB	2187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14876077	14876077	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A73A-01A-12D-A32G-10	TCGA-DD-A73A-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9800ae3-b791-4398-8e47-b95090ce40c4	f9cccec6-b538-4d9d-a04a-c06ed1337e87	.	FANCB	NM_001018113	exon6	c.1105-1G>A	.	TTCACTCTAATAA	.	127	93	156	0	.	562	T	14876077	C	T	14876077	5	4	101	1	0	0	0	0	0	0	1	0	5663	927	32	3	1499	3	FANCB	23	14876077	Splice_Site	SNP	C	TCGA-DD-A73A-01A-12D-A32G-10	3092451	14876077	140394483	107	12664											
FCGR2A	2212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161475295	161475295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FCGR2A	NM_001136219	exon1	c.C38T	p.P13L	TATGTCCCAGAAA	.	90	33	60	0	.	91	T	161475295	C	T	161475295	3	4	102	1	0	0	0	0	1	0	0	0	5781	623	22	3	40	3	FCGR2A	1	161475295	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10		161475295	87775326	1	12665											
FCGR3B	2215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161595991	161595991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FCGR3B	NM_001244753	exon4	c.G629A	p.G210E	ACAAGCCCCCTGC	.	183	100	133	0	.	22	T	161595991	C	T	161595991	3	4	102	1	0	0	0	0	1	0	0	0	5785	623	22	3	188	3	FCGR3B	1	161595991	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	120696	161595991	87654630	2	12666											
ATP2B4	493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203683382	203683382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ATP2B4	NM_001001396	exon15	c.A2383C	p.K795Q	CTGAAGAAAGCGG	.	60	28	42	0	.	517	C	203683382	A	C	203683382	3	2	102	1	0	0	0	0	1	0	0	0	1142	247	9	5	2437	5	ATP2B4	1	203683382	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	42087391	203683382	45567239	3	12667											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu	37	1	223284253	223284253	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TLR5	NM_003268	exon6	c.G2121T	p.V707V	ATTCTGCACCCAT	.	106	5	123	0	.	525	A	223284253	C	A	223284253	2	1	102	1	0	0	0	0	0	0	0	1	15951	697	25	3		3	TLR5	1	223284253	Silent	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	19600871	223284253	25966368	4	12668											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235915327	235915327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	LYST	NM_000081	exon27	c.T7605C	p.N2535N	TTTGCTATTTTGA	.	89	50	86	0	.	143	G	235915327	A	G	235915327	2	3	102	1	0	0	0	0	0	0	0	1	9128	446	16	2		2	LYST	1	235915327	Silent	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	12631074	235915327	13335294	5	12669											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39278406	39278406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SOS1	NM_005633	exon6	c.G743A	p.R248H	ACTATGCGACTAA	.	91	85	99	0	.	851	T	39278406	C	T	39278406	3	4	102	1	0	0	0	0	1	0	0	0	14936	768	27	1	3330	1	SOS1	2	39278406	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10		39278406	203920967	6	12670											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73676478	73676478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ALMS1	NM_015120	exon8	c.G2821A	p.A941T	TTGGCTGCCCAGA	.	254	93	185	0	.	142	A	73676478	G	A	73676478	3	1	102	1	0	0	0	0	1	0	0	0	535	1319	46	3	2851	3	ALMS1	2	73676478	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	34398072	73676478	169522895	7	12671											
TACR1	6869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75276831	75276831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TACR1	NM_001058	exon5	c.C952A	p.H318N	AGGCATGCTTGAA	.	47	25	37	0	.	523	T	75276831	G	T	75276831	3	4	102	1	0	0	0	0	1	0	0	0	15502	1319	46	3	275	3	TACR1	2	75276831	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	1600353	75276831	167922542	8	12672											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380985	109380985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	RANBP2	NM_006267	exon20	c.T3990C	p.D1330D	TCATGATAACAAG	.	47	43	99	0	.	675	C	109380985	T	C	109380985	2	2	102	1	0	0	0	0	0	0	0	1	13028	1403	49	2		2	RANBP2	2	109380985	Silent	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	34104154	109380985	133818388	9	12673											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166897863	166897863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SCN1A	NM_001165963	exon13	c.G2293T	p.V765L	CCATCACAACCAG	.	37	29	87	0	.	147	A	166897863	C	A	166897863	3	1	102	1	0	0	0	0	1	0	0	0	13914	478	17	3	3792	3	SCN1A	2	166897863	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	57516878	166897863	76301510	10	12674											
PRKAG3	53632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219688557	219688557	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PRKAG3	NM_017431	exon13	c.C1398T	p.G466G	GACCACGCCCAAG	.	13	8	34	0	.	659	A	219688557	G	A	219688557	2	1	102	1	0	0	0	0	0	0	0	1	12502	1074	38	1		1	PRKAG3	2	219688557	Silent	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	52790694	219688557	23510816	11	12675											
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242075390	242075390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PASK	NM_015148	exon8	c.A1202G	p.Q401R	GGGAGCTGTAATG	.	35	30	84	0	.	536	C	242075390	T	C	242075390	3	2	102	1	0	0	0	0	1	0	0	0	11472	1580	55	2	2813	2	PASK	2	242075390	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	22386833	242075390	1123983	12	12676											
TMEM42	131616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44906567	44906567	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TMEM42	NM_144638	exon3	c.G375A	p.Q125Q	GTGCCAGGAGGTC	.	135	64	155	0	.	90	A	44906567	G	A	44906567	2	1	102	1	0	0	0	0	0	0	0	1	16163	991	35	3		3	TMEM42	3	44906567	Silent	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		44906567	153115863	13	12677											
CCR2	729230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46399400	46399400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CCR2	NM_001123041	exon2	c.A382G	p.I128V	GGCGGAATCTTCT	.	180	82	178	0	.	568	G	46399400	A	G	46399400	3	3	102	1	0	0	0	0	1	0	0	0	2941	101	4	2	384	2	CCR2	3	46399400	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	1492833	46399400	151623030	14	12678											
GPX1	2876	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	49395602	49395602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	GPX1	.	.	.	.	ACCTTGCCCCGCA	.	96	41	100	1	.	68	T	49395602	C	T	49395602	3	4	102	1	0	0	0	0	1	0	0	0	6739	739	26	3	554	3	GPX1	3	49395602	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	2996202	49395602	148626828	15	12679											
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447680	187447680	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	BCL6	NM_001134738	exon4	c.C513T	p.S171S	AGGGGCGCTCCTC	.	36	34	72	0	.	848	A	187447680	G	A	187447680	2	1	102	1	0	0	0	0	0	0	0	1	1376	1078	38	1		1	BCL6	3	187447680	Silent	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	138052078	187447680	10574750	16	12680											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158256937	158256937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	GRIA2	NM_000826	exon10	c.T1381A	p.Y461N	TTCAAGTACAAGT	.	68	59	140	0	.	515	A	158256937	T	A	158256937	3	1	102	1	0	0	0	0	1	0	0	0	6768	1638	57	4	1419	4	GRIA2	4	158256937	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		158256937	32897339	17	12681											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13913898	13913898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DNAH5	NM_001369	exon11	c.A1490G	p.Q497R	GAATCTTGCAGGA	.	112	59	102	0	.	182	C	13913898	T	C	13913898	3	2	102	1	0	0	0	0	1	0	0	0	4604	1812	63	2	12660	2	DNAH5	5	13913898	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		13913898	167001362	18	12682											
C9	735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39308341	39308341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C9	NM_001737	exon8	c.G1231A	p.G411S	CTCTACCCTCTCC	.	287	119	324	0	.	90	T	39308341	C	T	39308341	3	4	102	1	0	0	0	0	1	0	0	0	2443	623	22	3	464	3	C9	5	39308341	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	25394443	39308341	141606919	19	12683											
C5orf34	375444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43492341	43492341	+	Missense_Mutation	SNP	A	A	G	rs145050535		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C5orf34	NM_198566	exon10	c.T1556C	p.I519T	TGTTCAATCTGAA	.	429	181	414	0	A|1.000;G|0.000	153	G	43492341	A	G	43492341	3	3	102	1	0	0	0	0	1	0	0	0	2293	101	4	2	376	2	C5orf34	5	43492341	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	4184000	43492341	137422919	20	12684											
TMEM174	134288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72469597	72469597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TMEM174	NM_153217	exon1	c.T527A	p.M176K	CCGCCATGTCAAG	.	142	61	167	0	.	91	A	72469597	T	A	72469597	3	1	102	1	0	0	0	0	1	0	0	0	16087	1464	51	4	529	4	TMEM174	5	72469597	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	28977256	72469597	108445663	21	12685											
MAN2A1	4124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109178033	109178033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MAN2A1	NM_002372	exon17	c.A2571G	p.I857M	AGGAATAGAAGGA	.	284	128	302	0	.	92	G	109178033	A	G	109178033	3	3	102	1	0	0	0	0	1	0	0	0	9214	410	15	2	2637	2	MAN2A1	5	109178033	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	36708436	109178033	71737227	22	12686											
SMAD5	4090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135510151	135510151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SMAD5	.	.	.	.	TGCAACTTTCATC	.	118	50	121	0	.	278	C	135510151	T	C	135510151	3	2	102	1	0	0	0	0	1	0	0	0	14761	1609	56	2	1102	2	SMAD5	5	135510151	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	26332118	135510151	45405109	23	12687											
SPINK6	404203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147593575	147593575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SPINK6	NM_205841	exon3	c.T184C	p.C62R	GCCTTCTGTAAGG	.	70	30	58	0	.	91	C	147593575	T	C	147593575	3	2	102	1	0	0	0	0	1	0	0	0	15062	1580	55	2	194	2	SPINK6	5	147593575	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	12083424	147593575	33321685	24	12688											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu	37	6	12120242	12120242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	HIVEP1	NM_002114	exon4	c.C214T	p.Q72X	CCTCTTCAGGCAA	.	102	5	110	0	.	139	T	12120242	C	T	12120242	4	4	102	1	0	0	0	0	0	1	0	0	7186	827	29	3	224	3	HIVEP1	6	12120242	Nonsense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10		12120242	158994825	25	12689											
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20481488	20481488	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	E2F3	NM_001949	exon3	c.T557G	p.L186R	GTCTGCTCACCAA	.	57	25	69	0	.	414	G	20481488	T	G	20481488	3	3	102	1	0	0	0	0	1	0	0	0	4868	1551	54	5	567	5	E2F3	6	20481488	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	8361246	20481488	150633579	26	12690											
C4A	720	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	31997490	31997490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C4A	NM_007293	exon29	c.A3824C	p.H1275P	TGCTTCACGAGGG	.	283	60	293	0	.	44	C	31997490	A	C	31997490	3	2	102	1	0	0	0	0	1	0	0	0	2247	159	6	5	8663	5	C4A	6	31997490	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	11516002	31997490	139117577	27	12691											
INHBA	3624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	41729922	41729922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	INHBA	NM_002192	exon3	c.G607T	p.E203X	ACAGTTCACTCCT	.	104	30	118	0	.	703	A	41729922	C	A	41729922	4	1	102	1	0	0	0	0	0	1	0	0	7741	835	29	3	677	3	INHBA	7	41729922	Nonsense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10		41729922	117408741	28	12692											
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	76796998	76796998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CCDC146	NM_020879	exon2	c.A13G	p.S5G	GACAGTAGCACAG	.	486	155	492	0	.	70	G	76796998	A	G	76796998	3	3	102	1	0	0	0	0	1	0	0	0	2780	420	15	2	15	2	CCDC146	7	76796998	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	35067076	76796998	82341665	29	12693											
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83035265	83035265	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SEMA3E	NM_012431	exon8	c.A924G	p.E308E	ACCTAATTCATCA	.	84	37	71	0	.	93	C	83035265	T	C	83035265	2	2	102	1	0	0	0	0	0	0	0	1	14028	1490	52	2		2	SEMA3E	7	83035265	Silent	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	6238267	83035265	76103398	30	12694											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100349486	100349486	+	RNA	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZAN	.	.	.	.	CACAGTCCCCAAA	.	164	93	136	0	.	142	A	100349486	C	A	100349486	1	1	102	0	1	0	0	0	0	0	0	0	17510	842	30	3		3	ZAN	7	100349486	RNA	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	17314221	100349486	58789177	31	12695											
SRRT	51593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	100478943	100478943	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SRRT	NM_001128853	exon3	c.G160T	p.E54X	CGGGGTGAATATC	.	77	29	46	0	.	92	T	100478943	G	T	100478943	4	4	102	1	0	0	0	0	0	1	0	0	15171	1291	45	3	166	3	SRRT	7	100478943	Nonsense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	129457	100478943	58659720	32	12696											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103202066	103202066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	RELN	NM_173054	exon36	c.T5442C	p.P1814P	AAGGTCAGGATGT	.	81	37	71	0	.	574	G	103202066	A	G	103202066	2	3	102	1	0	0	0	0	0	0	0	1	13220	175	7	2		2	RELN	7	103202066	Silent	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	2723123	103202066	55936597	33	12697											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111449457	111449457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DOCK4	NM_014705	exon29	c.A3007G	p.I1003V	CCCAGATCTAAAA	.	50	30	70	0	.	26	C	111449457	T	C	111449457	3	2	102	1	0	0	0	0	1	0	0	0	4689	1449	50	2	2989	2	DOCK4	7	111449457	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	8247391	111449457	47689206	34	12698											
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154645526	154645526	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DPP6	NM_130797	exon17	c.C1703G	p.T568R	ACACAACAGATAA	.	103	35	113	0	.	652	G	154645526	C	G	154645526	3	3	102	1	0	0	0	0	1	0	0	0	4730	478	17	4	1885	4	DPP6	7	154645526	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	43196069	154645526	4493137	35	12699											
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106813922	106813922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZFPM2	NM_012082	exon8	c.G1612A	p.V538I	CCTCCCGTCATTT	.	35	34	45	0	.	139	A	106813922	G	A	106813922	3	1	102	1	0	0	0	0	1	0	0	0	17655	1145	40	1	1642	1	ZFPM2	8	106813922	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		106813922	39550100	36	12700											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114124389	114124389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KIAA0368	NM_001080398	exon51	c.C5975T	p.A1992V	ATAGTAGCTAAAG	.	130	69	148	0	.	68	A	114124389	G	A	114124389	3	1	102	1	0	0	0	0	1	0	0	0	8171	971	34	3	82	3	KIAA0368	9	114124389	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		114124389	27089042	37	12701											
OLFML2A	169611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	127563878	127563878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	OLFML2A	NM_182487	exon5	c.G855T	p.Q285H	GCAGCAGGCTGTG	.	132	59	129	2	.	68	T	127563878	G	T	127563878	3	4	102	1	0	0	0	0	1	0	0	0	10857	991	35	3	873	3	OLFML2A	9	127563878	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	13439489	127563878	13649553	38	12702	71	2									
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	127563879	127563879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	OLFML2A	NM_182487	exon5	c.G856T	p.A286S	CAGCAGGCTGTGA	.	132	59	130	0	.	68	T	127563879	G	T	127563879	3	4	102	1	0	0	0	0	1	0	0	0	10857	1203	42	3	874	3	OLFML2A	9	127563879	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	1	127563879	13649552	39	12703	71	2									
RABEPK	10244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127996064	127996064	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	RABEPK	NM_005833	exon8	c.T924C	p.A308A	GTGTGCTTCTGAG	.	126	56	122	0	.	91	C	127996064	T	C	127996064	2	2	102	1	0	0	0	0	0	0	0	1	12963	1596	56	2		2	RABEPK	9	127996064	Silent	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	432185	127996064	13217367	40	12704											
URM1	81605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131152007	131152007	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	URM1	NM_030914	exon5	c.C300T	p.G100G	GCACGGCGGCTGA	.	94	39	101	0	.	90	T	131152007	C	T	131152007	2	4	102	1	0	0	0	0	0	0	0	1	17024	755	27	1		1	URM1	9	131152007	Silent	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	3155943	131152007	10061424	41	12705											
NPFFR1	64106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	72015152	72015152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	NPFFR1	NM_022146	exon4	c.C854T	p.P285L	CAGAGCGGCAGCC	.	18	9	21	0	.	22	A	72015152	G	A	72015152	3	1	102	1	0	0	0	0	1	0	0	0	10577	1116	39	1	441	1	NPFFR1	10	72015152	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		72015152	63519595	42	12706											
ACSL5	51703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114168208	114168208	+	Missense_Mutation	SNP	C	C	G	rs140011392	alternate_allele	TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ACSL5	NM_016234	exon6	c.C629G	p.T210R	GTTACACGTACTC	.	153	68	156	0	C|1.000;T|0.000	154	G	114168208	C	G	114168208	3	3	102	1	0	0	0	0	1	0	0	0	180	536	19	4	651	4	ACSL5	10	114168208	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	42153056	114168208	21366539	43	12707											
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118969678	118969678	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KCNK18	NM_181840	exon3	c.C1023G	p.S341S	CTTCTCCATTTAT	.	94	42	102	0	.	91	G	118969678	C	G	118969678	2	3	102	1	0	0	0	0	0	0	0	1	8065	581	21	4		4	KCNK18	10	118969678	Silent	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	4801470	118969678	16565069	44	12708											
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120354363	120354363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PRLHR	NM_004248	exon2	c.G394A	p.G132S	ACAGGCCGCCGCC	.	36	17	28	0	.	90	T	120354363	C	T	120354363	3	4	102	1	0	0	0	0	1	0	0	0	12530	652	23	1	722	1	PRLHR	10	120354363	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	1384685	120354363	15180384	45	12709											
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	4592676	4592676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C11orf40	NM_144663	exon4	c.A631G	p.N211D	AGTAGTTCACATC	.	73	15	72	0	.	92	C	4592676	T	C	4592676	3	2	102	1	0	0	0	0	1	0	0	0	1639	1783	62	2	25	2	C11orf40	11	4592676	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		4592676	130413840	46	12710											
OR51F1	256892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4790712	4790712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	OR51F1	NM_001004752	exon1	c.A436G	p.M146V	GACCCATTTGAAT	.	76	34	63	0	.	70	C	4790712	T	C	4790712	3	2	102	1	0	0	0	0	1	0	0	0	11096	1493	52	2	505	2	OR51F1	11	4790712	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	198036	4790712	130215804	47	12711											
CYP2R1	120227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14902228	14902228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CYP2R1	NM_024514	exon3	c.A454C	p.K152Q	AAGACTTTTGGCC	.	141	60	121	0	.	91	G	14902228	T	G	14902228	3	3	102	1	0	0	0	0	1	0	0	0	4173	1850	64	5	1063	5	CYP2R1	11	14902228	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	10111516	14902228	120104288	48	12712											
OR8I2	120586	broad.mit.edu;mdanderson.org	37	11	55861688	55861688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	OR8I2	NM_001003750	exon1	c.G905A	p.R302K	TTCTGAGAGTCAT	.	29	13	39	0	.	113	A	55861688	G	A	55861688	3	1	102	1	0	0	0	0	1	0	0	0	11240	942	33	3	907	3	OR8I2	11	55861688	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	40959460	55861688	79144828	49	12713											
CD5	921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60882526	60882526	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CD5	NM_014207	exon2	c.56-2A>G	.	TTCTGCAGTCGCT	.	23	14	25	1	.	91	G	60882526	A	G	60882526	5	3	102	1	0	0	0	0	0	0	1	0	3021	202	7	2	60	2	CD5	11	60882526	Splice_Site	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	5020838	60882526	74123990	50	12714											
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65359477	65359477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	EHBP1L1	NM_001099409	exon18	c.G4388T	p.R1463L	AGCACCGAGAGCA	.	56	25	57	0	.	69	T	65359477	G	T	65359477	3	4	102	1	0	0	0	0	1	0	0	0	4976	1058	37	1	4458	1	EHBP1L1	11	65359477	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	4476951	65359477	69647039	51	12715											
ADRBK1	156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67046702	67046702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ADRBK1	NM_001619	exon3	c.C222A	p.N74K	CCTGAACCACCTG	.	96	37	100	0	.	521	A	67046702	C	A	67046702	3	1	102	1	0	0	0	0	1	0	0	0	343	506	18	3	232	3	ADRBK1	11	67046702	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	1687225	67046702	67959814	52	12716											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94318670	94318670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PIWIL4	NM_152431	exon6	c.C695A	p.P232Q	CAGAGCCAATGGA	.	77	63	116	0	.	91	A	94318670	C	A	94318670	3	1	102	1	0	0	0	0	1	0	0	0	11960	594	21	3	717	3	PIWIL4	11	94318670	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	27271968	94318670	40687846	53	12717											
CD9	928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6342629	6342629	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CD9	NM_001769	exon4	c.T325G	p.W109G	GCCATCTGGGGAT	.	83	41	93	0	.	91	G	6342629	T	G	6342629	3	3	102	1	0	0	0	0	1	0	0	0	3046	1580	55	5	339	5	CD9	12	6342629	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		6342629	127509266	54	12718											
CD4	920	broad.mit.edu;bcgsc.ca	37	12	6926465	6926465	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CD4	NM_000616	exon7	c.G1125C	p.S375S	TGACTCGGGACAG	.	69	9	75	0	.	90	C	6926465	G	C	6926465	2	2	102	1	0	0	0	0	0	0	0	1	3014	1103	39	4		4	CD4	12	6926465	Silent	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	583836	6926465	126925430	55	12719											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46246151	46246151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ARID2	NM_152641	exon15	c.T4245G	p.I1415M	AAGAATTTCTAAT	.	155	63	163	0	.	100	G	46246151	T	G	46246151	3	3	102	1	0	0	0	0	1	0	0	0	915	1829	64	5	4303	5	ARID2	12	46246151	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	39319686	46246151	87605744	56	12720											
KRT81	3887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52680104	52680104	+	Missense_Mutation	SNP	C	C	T	rs115355093	byfrequency	TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KRT81	NM_002281	exon9	c.G1453A	p.V485M	AGCCCACGCCGCA	.	77	11	74	0	C|0.995;T|0.005	90	T	52680104	C	T	52680104	3	4	102	1	0	0	0	0	1	0	0	0	8495	536	19	1	68	1	KRT81	12	52680104	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	6433953	52680104	81171791	57	12721											
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	54118936	54118936	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CALCOCO1	NM_020898	exon2	c.G91T	p.E31X	GACATTCCACCTT	.	135	58	117	0	.	91	A	54118936	C	A	54118936	4	1	102	1	0	0	0	0	0	1	0	0	2577	864	30	3	2040	3	CALCOCO1	12	54118936	Nonsense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	1438832	54118936	79732959	58	12722											
CHST11	50515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	105151023	105151023	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CHST11	NM_018413	exon3	c.C501A	p.Y167X	CCAGTACAGCATC	.	71	31	65	0	.	90	A	105151023	C	A	105151023	4	1	102	1	0	0	0	0	0	1	0	0	3399	489	17	3	511	3	CHST11	12	105151023	Nonsense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	51032087	105151023	28700872	59	12723											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77656079	77656079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MYCBP2	NM_015057	exon64	c.A11086G	p.S3696G	CGTTGCTCTGATG	.	124	56	82	0	.	236	C	77656079	T	C	77656079	3	2	102	1	0	0	0	0	1	0	0	0	10018	1551	54	2	3030	2	MYCBP2	13	77656079	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		77656079	37513799	60	12724											
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	109793226	109793226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MYO16	NM_001198950	exon32	c.G4666A	p.G1556R	CCGGAGGGGTCGA	.	150	44	70	0	.	142	A	109793226	G	A	109793226	3	1	102	1	0	0	0	0	1	0	0	0	10064	1232	43	3	4722	3	MYO16	13	109793226	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	32137147	109793226	5376652	61	12725											
CHURC1	91612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	65398946	65398946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CHURC1	NM_145165	exon4	c.T421C	p.X141Q	TTATTCTAAGGAT	.	131	31	109	0	.	91	C	65398946	T	C	65398946	3	2	102	1	0	0	0	0	1	0	0	0	3417	1535	53	2	354	2	CHURC1	14	65398946	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		65398946	41950594	62	12726											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48056407	48056407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SEMA6D	NM_153617	exon11	c.T1002A	p.D334E	CATGGATGACATT	.	104	84	186	0	.	138	A	48056407	T	A	48056407	3	1	102	1	0	0	0	0	1	0	0	0	14042	1461	51	4	1040	4	SEMA6D	15	48056407	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10		48056407	54474985	63	12727											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89400397	89400397	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ACAN	NM_001135	exon12	c.G4581A	p.R1527R	CAGCAGGCTCCCT	.	42	38	64	0	.	25	A	89400397	G	A	89400397	2	1	102	1	0	0	0	0	0	0	0	1	117	1194	42	3		3	ACAN	15	89400397	Silent	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	41343990	89400397	13130995	64	12728											
ERN2	10595	broad.mit.edu;bcgsc.ca	37	16	23717746	23717746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ERN2	NM_033266	exon7	c.C638T	p.T213M	GTGACCGTATACT	.	59	4	53	0	.	322	A	23717746	G	A	23717746	3	1	102	1	0	0	0	0	1	0	0	0	5238	1145	40	1	2350	1	ERN2	16	23717746	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		23717746	66637007	65	12729											
ZNF764	92595	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30569410	30569410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZNF764	NM_001172679	exon1	c.G94T	p.A32S	ACACGGCCACGTC	.	18	9	31	0	.	91	A	30569410	C	A	30569410	3	1	102	1	0	0	0	0	1	0	0	0	18135	739	26	3	1144	3	ZNF764	16	30569410	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	6851664	30569410	59785343	66	12730											
NAGS	162417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42083959	42083959	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	NAGS	NM_153006	exon4	c.C978T	p.S326S	GGTGAGCACAAAA	.	61	25	60	0	.	90	T	42083959	C	T	42083959	2	4	102	1	0	0	0	0	0	0	0	1	10145	709	25	3		3	NAGS	17	42083959	Silent	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10		42083959	39111251	67	12731											
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48156884	48156884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ITGA3	NM_005501	exon21	c.T2669C	p.L890P	TCACTCTGGCTGC	.	68	31	62	0	.	229	C	48156884	T	C	48156884	3	2	102	1	0	0	0	0	1	0	0	0	7877	1580	55	2	2751	2	ITGA3	17	48156884	Missense_Mutation	SNP	T	TCGA-DD-A73B-01A-12D-A32G-10	6072925	48156884	33038326	68	12732											
CACNG1	786	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65040955	65040955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CACNG1	NM_000727	exon1	c.G179A	p.R60H	CCAAGCGCATCCC	.	31	11	25	1	.	90	A	65040955	G	A	65040955	3	1	102	1	0	0	0	0	1	0	0	0	2556	1087	38	1	181	1	CACNG1	17	65040955	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	16884071	65040955	16154255	69	12733											
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74075584	74075584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZACN	NM_180990	exon2	c.C162A	p.N54K	CCCGAACAATGGG	.	164	78	153	0	.	90	A	74075584	C	A	74075584	3	1	102	1	0	0	0	0	1	0	0	0	17507	477	17	3	168	3	ZACN	17	74075584	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	9034629	74075584	7119626	70	12734											
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	78968447	78968447	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CHMP6	NM_024591	exon2	c.G130T	p.E44X	GAGCGCGAGCGCG	.	79	33	63	0	.	91	T	78968447	G	T	78968447	4	4	102	1	0	0	0	0	0	1	0	0	3360	1059	37	1	136	1	CHMP6	17	78968447	Nonsense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	4892863	78968447	2226763	71	12735											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80045029	80045029	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FASN	NM_004104	exon21	c.G3324A	p.E1108E	CTGCTGCTCCTGC	.	58	30	68	0	.	90	T	80045029	C	T	80045029	2	4	102	1	0	0	0	0	0	0	0	1	5683	796	28	3		3	FASN	17	80045029	Silent	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	1076582	80045029	1150181	72	12736											
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2909794	2909794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	EMILIN2	NM_032048	exon7	c.G2801T	p.G934V	ACGACGGGGATGT	.	104	40	104	0	.	93	T	2909794	G	T	2909794	3	4	102	1	0	0	0	0	1	0	0	0	5094	1232	43	3	2827	3	EMILIN2	18	2909794	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		2909794	75167454	73	12737											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2217014	2217014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DOT1L	NM_032482	exon21	c.G2469T	p.M823I	CAGCATGAAGCTG	.	49	21	68	0	.	132	T	2217014	G	T	2217014	3	4	102	1	0	0	0	0	1	0	0	0	4709	1290	45	3	2551	3	DOT1L	19	2217014	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10		2217014	56911969	74	12738											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6714382	6714382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C3	NM_000064	exon5	c.G580A	p.D194N	GAATGTCCCAAGA	.	101	56	79	0	.	95	T	6714382	C	T	6714382	3	4	102	1	0	0	0	0	1	0	0	0	2204	855	30	3	4559	3	C3	19	6714382	Missense_Mutation	SNP	C	TCGA-DD-A73B-01A-12D-A32G-10	4497368	6714382	52414601	75	12739											
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17291744	17291744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MYO9B	NM_001130065	exon15	c.A2228T	p.H743L	ATTTGCATAACCA	.	93	37	79	0	.	67	T	17291744	A	T	17291744	3	4	102	1	0	0	0	0	1	0	0	0	10085	217	8	4	2282	4	MYO9B	19	17291744	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	10577362	17291744	41837239	76	12740											
GPI	2821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34890537	34890537	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	GPI	NM_001184722	exon16	c.1507+1G>T	.	TGGTCGGTGAGTG	.	156	59	150	0	.	228	T	34890537	G	T	34890537	5	4	102	1	0	0	0	0	0	0	1	0	6611	1275	44	3	1658	3	GPI	19	34890537	Splice_Site	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	17598793	34890537	24238446	77	12741											
DMKN	93099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35992755	35992755	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DMKN	NM_001035516	exon1	c.C51T	p.G17G	GGCCAGGCCCAGC	.	30	8	42	0	.	155	A	35992755	G	A	35992755	2	1	102	1	0	0	0	0	0	0	0	1	4582	1190	42	3		3	DMKN	19	35992755	Silent	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	1102218	35992755	23136228	78	12742											
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44471018	44471018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZNF221	NM_013359	exon6	c.G1364A	p.C455Y	AGGAGTGTGGTAA	.	71	39	64	0	.	91	A	44471018	G	A	44471018	3	1	102	1	0	0	0	0	1	0	0	0	17772	1377	48	3	1378	3	ZNF221	19	44471018	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	8478263	44471018	14657965	79	12743											
ZNF584	201514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58928202	58928202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZNF584	NM_173548	exon4	c.A317G	p.E106G	AGGATGAGAGAGC	.	47	24	48	2	.	90	G	58928202	A	G	58928202	3	3	102	1	0	0	0	0	1	0	0	0	18013	304	11	2	331	2	ZNF584	19	58928202	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10	14457184	58928202	200781	80	12744											
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16387061	16387061	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KIF16B	NM_001199865	exon16	c.T1653C	p.F551F	ATGGTTAAAGCGA	.	122	62	98	0	.	291	G	16387061	A	G	16387061	2	3	102	1	0	0	0	0	0	0	0	1	8278	359	13	2		2	KIF16B	20	16387061	Silent	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10		16387061	46638459	81	12745											
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33703635	33703635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	EDEM2	NM_018217	exon11	c.C1338G	p.F446L	GTGGATGAAGTTG	.	150	65	149	0	.	90	C	33703635	G	C	33703635	3	2	102	1	0	0	0	0	1	0	0	0	4912	1281	45	4	402	4	EDEM2	20	33703635	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	17316574	33703635	29321885	82	12746											
SCAND1	51282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	34541998	34541998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SCAND1	NM_033630	exon2	c.C398T	p.A133V	AGGGCCGCGGAGG	.	23	12	26	0	.	90	A	34541998	G	A	34541998	3	1	102	1	0	0	0	0	1	0	0	0	13875	1087	38	1	334	1	SCAND1	20	34541998	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	838363	34541998	28483522	83	12747											
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62076074	62076074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KCNQ2	NM_172106	exon4	c.C628T	p.R210C	CCATGCGGATCAT	.	57	25	56	0	.	92	A	62076074	G	A	62076074	3	1	102	1	0	0	0	0	1	0	0	0	8083	1116	39	1	2110	1	KCNQ2	20	62076074	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	27534076	62076074	949446	84	12748											
YWHAH	7533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32352465	32352465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	YWHAH	NM_003405	exon2	c.A427C	p.K143Q	GAGAAGAAAAACA	.	24	19	74	2	.	1082	C	32352465	A	C	32352465	3	2	102	1	0	0	0	0	1	0	0	0	17501	247	9	5	433	5	YWHAH	22	32352465	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10		32352465	18952101	85	12749											
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34962716	34962716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FAM47B	NM_152631	exon1	c.A1768T	p.I590F	GGACCAATTGCCT	.	217	49	186	0	.	196	T	34962716	A	T	34962716	3	4	102	1	0	0	0	0	1	0	0	0	5570	101	4	4	1770	4	FAM47B	23	34962716	Missense_Mutation	SNP	A	TCGA-DD-A73B-01A-12D-A32G-10		34962716	120307844	86	12750											
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132161219	132161219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	USP26	NM_031907	exon1	c.C1030T	p.R344W	GTAGCCGTGCCAA	.	264	133	268	0	.	661	A	132161219	G	A	132161219	3	1	102	1	0	0	0	0	1	0	0	0	17054	1144	40	1	1714	1	USP26	23	132161219	Missense_Mutation	SNP	G	TCGA-DD-A73B-01A-12D-A32G-10	97198503	132161219	23109341	87	12751											
SAMD11	148398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	878691	878691	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SAMD11	NM_152486	exon12	c.C1623G	p.T541T	CGTCACCAAGTGG	.	106	36	116	1	.	90	G	878691	C	G	878691	2	3	103	1	0	0	0	0	0	0	0	1	13816	581	21	4		4	SAMD11	1	878691	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		878691	248371930	1	12752											
TPRG1L	127262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3544159	3544159	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TPRG1L	NM_182752	exon4	c.C566G	p.A189G	CCTATGCCACTTT	.	75	25	99	0	.	68	G	3544159	C	G	3544159	3	3	103	1	0	0	0	0	1	0	0	0	16416	739	26	4	580	4	TPRG1L	1	3544159	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	2665468	3544159	245706462	2	12753											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19525340	19525340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	UBR4	NM_020765	exon4	c.T461A	p.M154K	TTCATCATTGCTG	.	128	42	158	0	.	612	T	19525340	A	T	19525340	3	4	103	1	0	0	0	0	1	0	0	0	16901	217	8	4	15502	4	UBR4	1	19525340	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	15981181	19525340	229725281	3	12754											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156815015	156815015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	INSRR	NM_014215	exon12	c.G2290A	p.E764K	TGTCCTCCTGGAT	.	87	23	67	0	.	1403	T	156815015	C	T	156815015	3	4	103	1	0	0	0	0	1	0	0	0	7774	864	30	3	1646	3	INSRR	1	156815015	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	137289675	156815015	92435606	4	12755											
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157771365	157771365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FCRL1	NM_001159398	exon6	c.C889T	p.P297S	CAGTAGGCACTAG	.	132	52	128	0	.	153	A	157771365	G	A	157771365	3	1	103	1	0	0	0	0	1	0	0	0	5794	1203	42	3	490	3	FCRL1	1	157771365	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	956350	157771365	91479256	5	12756											
TIPRL	261726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	168165787	168165787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TIPRL	NM_152902	exon5	c.A519C	p.R173S	CCAGAGAGTAATG	.	25	10	44	0	.	91	C	168165787	A	C	168165787	3	2	103	1	0	0	0	0	1	0	0	0	15923	301	11	5	562	5	TIPRL	1	168165787	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	10394422	168165787	81084834	6	12757											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180080224	180080224	+	Missense_Mutation	SNP	G	G	T	rs201090590	alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CEP350	NM_014810	exon38	c.G9282T	p.E3094D	CTTTGAGACCCTG	.	71	19	108	0	G|0.999;C|0.000	26	T	180080224	G	T	180080224	3	4	103	1	0	0	0	0	1	0	0	0	3254	933	33	3	9428	3	CEP350	1	180080224	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	11914437	180080224	69170397	7	12758											
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	18765784	18765784	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	NT5C1B	NM_001199087	exon5	c.G950A	p.W317X	ACCGGCCAGGGGC	.	57	13	40	0	.	47	T	18765784	C	T	18765784	4	4	103	1	0	0	0	0	0	1	0	0	10686	595	21	3	957	3	NT5C1B	2	18765784	Nonsense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		18765784	224433589	8	12759											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39041005	39041005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	DHX57	NM_198963	exon21	c.A3639G	p.I1213M	TGCTGATATCAGC	.	215	11	288	0	.	228	C	39041005	T	C	39041005	3	2	103	1	0	0	0	0	1	0	0	0	4513	1396	49	2	537	2	DHX57	2	39041005	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	20275221	39041005	204158368	9	12760											
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174224163	174224163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CDCA7	NM_031942	exon3	c.G328T	p.D110Y	CATGCCGACTCTG	.	106	38	129	0	.	91	T	174224163	G	T	174224163	3	4	103	1	0	0	0	0	1	0	0	0	3090	1058	37	1	338	1	CDCA7	2	174224163	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	135183158	174224163	68975210	10	12761											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179435859	179435859	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TTN	NM_001267550	exon326	c.T75000C	p.C25000C	CACATAACATTCT	.	41	16	49	0	.	636	G	179435859	A	G	179435859	2	3	103	1	0	0	0	0	0	0	0	1	16732	41	2	2		2	TTN	2	179435859	Silent	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	5211696	179435859	63763514	11	12762											
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211512674	211512674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CPS1	NM_001122633	exon27	c.G3247C	p.G1083R	ATCATGGGCACAA	.	219	56	245	0	.	162	C	211512674	G	C	211512674	3	2	103	1	0	0	0	0	1	0	0	0	3823	1232	43	4	3353	4	CPS1	2	211512674	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	32076815	211512674	31686699	12	12763											
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124227	217124227	+	Silent	SNP	C	C	T	rs139359941		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MARCH4	NM_020814	exon4	c.G1041A	p.S347S	CTCTTCCGAGGAG	.	88	32	118	0	C|1.000;T|0.000	69	T	217124227	C	T	217124227	2	4	103	1	0	0	0	0	0	0	0	1	9303	639	23	1		1	MARCH4	2	217124227	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	5611553	217124227	26075146	13	12764											
LRRN1	57633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	3887625	3887625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	LRRN1	NM_020873	exon2	c.C1300T	p.R434C	CCAAATCGTTTAA	.	109	10	150	0	.	90	T	3887625	C	T	3887625	3	4	103	1	0	0	0	0	1	0	0	0	9034	884	31	1	1302	1	LRRN1	3	3887625	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		3887625	194134805	14	12765											
EAF1	85403	broad.mit.edu;bcgsc.ca	37	3	15480644	15480645	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	EAF1	NM_033083	exon6	c.789_790del	p.263_264del	GTCTGGCAGTGAC	.	36	8	45	0	.	90	-	15480645	CA	-	15480644	7	5	103	1	0	1	0	1	0	0	0	0	4875	697	25	0	811	0	EAF1	3	15480644	Frame_Shift_Del	DEL	CA	TCGA-DD-A73C-01A-12D-A33K-10	11593019	15480644	182541786	15	12766	72	2									
EAF1	85403	broad.mit.edu;bcgsc.ca	37	3	15480647	15480647	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	EAF1	NM_033083	exon6	c.792delT	p.S264fs	TGGCAGTGACAGT	.	36	8	46	0	.	90	-	15480647	T	-	15480647	7	5	103	1	0	1	0	1	0	0	0	0	4875	1693	59	0	814	0	EAF1	3	15480647	Frame_Shift_Del	DEL	T	TCGA-DD-A73C-01A-12D-A33K-10	3	15480647	182541783	16	12767	72	2									
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32801028	32801028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CNOT10	NM_001256742	exon14	c.A1854C	p.K618N	AGATAAACTTCTT	.	71	9	87	0	.	91	C	32801028	A	C	32801028	3	2	103	1	0	0	0	0	1	0	0	0	3618	40	2	5	1728	5	CNOT10	3	32801028	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	17320381	32801028	165221402	17	12768											
OXSR1	9943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38263170	38263170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	OXSR1	NM_005109	exon6	c.A592G	p.M198V	GAAGTTATGGAAC	.	91	7	102	0	.	311	G	38263170	A	G	38263170	3	3	103	1	0	0	0	0	1	0	0	0	11336	449	16	2	614	2	OXSR1	3	38263170	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	5462142	38263170	159759260	18	12769											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47163059	47163059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SETD2	NM_014159	exon3	c.A3067G	p.S1023G	CACTACTGTCACA	.	172	57	206	0	.	1273	C	47163059	T	C	47163059	3	2	103	1	0	0	0	0	1	0	0	0	14131	1580	55	2	4703	2	SETD2	3	47163059	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	8899889	47163059	150859371	19	12770											
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49749928	49749930	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RNF123	NM_022064	exon27	c.2513_2515del	p.838_839del	TGGACATCTACTG	.	48	12	55	0	.	584	-	49749930	TCT	-	49749928	7	5	103	1	0	1	0	1	0	0	0	0	13433	1435	50	0	2615	0	RNF123	3	49749928	In_Frame_Del	DEL	TCT	TCGA-DD-A73C-01A-12D-A33K-10	2586869	49749928	148272502	20	12771											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121410667	121410667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GOLGB1	NM_001256486	exon14	c.A7544T	p.E2515V	ATTTCTTCTTTAA	.	59	11	67	0	.	161	A	121410667	T	A	121410667	3	1	103	1	0	0	0	0	1	0	0	0	6565	1783	62	4	2286	4	GOLGB1	3	121410667	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	71660739	121410667	76611763	21	12772											
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	143271227	143271227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SLC9A9	NM_173653	exon9	c.G1066T	p.D356Y	TGGAATCCGAAGA	.	43	19	75	0	.	229	A	143271227	C	A	143271227	3	1	103	1	0	0	0	0	1	0	0	0	14721	855	30	3	903	3	SLC9A9	3	143271227	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	21860560	143271227	54751203	22	12773											
SKIL	6498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170110171	170110171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SKIL	NM_001248008	exon6	c.A2021T	p.Q674L	AGCTGCAAATTCT	.	239	78	260	0	.	228	T	170110171	A	T	170110171	3	4	103	1	0	0	0	0	1	0	0	0	14358	130	5	4	2043	4	SKIL	3	170110171	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	26838944	170110171	27912259	23	12774											
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15516353	15516353	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CC2D2A	NM_001080522	exon10	c.T741A	p.G247G	TAATGGTGATGAT	.	51	19	58	0	.	25	A	15516353	T	A	15516353	2	1	103	1	0	0	0	0	0	0	0	1	2728	1683	59	4		4	CC2D2A	4	15516353	Silent	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10		15516353	175637923	24	12775											
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52938154	52938154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SPATA18	NM_145263	exon6	c.G590T	p.R197L	ATAGGCGGTCAGA	.	106	25	115	0	.	72	T	52938154	G	T	52938154	3	4	103	1	0	0	0	0	1	0	0	0	15002	1116	39	1	612	1	SPATA18	4	52938154	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	37421801	52938154	138216122	25	12776											
ARL9	132946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	57384922	57384922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ARL9	NM_206919	exon3	c.C95A	p.S32X	TGGATTCAGCAGA	.	91	27	130	0	.	22	A	57384922	C	A	57384922	4	1	103	1	0	0	0	0	0	1	0	0	948	838	29	3	101	3	ARL9	4	57384922	Nonsense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	4446768	57384922	133769354	26	12777											
MFSD8	256471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	128851953	128851953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MFSD8	NM_152778	exon10	c.A883G	p.M295V	TATCCATTGTTAA	.	233	13	293	0	.	92	C	128851953	T	C	128851953	3	2	103	1	0	0	0	0	1	0	0	0	9538	1493	52	2	689	2	MFSD8	4	128851953	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	71467031	128851953	62302323	27	12778											
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184182412	184182412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WWC2	NM_024949	exon11	c.C1636G	p.L546V	GCCTCCCTGTCCT	.	48	18	47	0	.	93	G	184182412	C	G	184182412	3	3	103	1	0	0	0	0	1	0	0	0	17409	680	24	4	1678	4	WWC2	4	184182412	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	55330459	184182412	6971864	28	12779											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187557324	187557324	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FAT1	NM_005245	exon6	c.C4038A	p.I1346I	CTTGGAGATCCAT	.	87	28	86	0	.	34	T	187557324	G	T	187557324	2	4	103	1	0	0	0	0	0	0	0	1	5689	932	33	3		3	FAT1	4	187557324	Silent	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	3374912	187557324	3596952	29	12780											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13830842	13830842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	DNAH5	NM_001369	exon36	c.G5925A	p.G1975G	GGCTCCCCCCATG	.	56	19	50	0	.	182	T	13830842	C	T	13830842	2	4	103	1	0	0	0	0	0	0	0	1	4604	610	22	3		3	DNAH5	5	13830842	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		13830842	167084418	30	12781											
FYB	2533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	39137761	39137761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FYB	NM_001243093	exon7	c.G1486T	p.E496X	TTTTCTCCAGCTC	.	90	37	124	0	.	24	A	39137761	C	A	39137761	4	1	103	1	0	0	0	0	0	1	0	0	6124	864	30	3	1085	3	FYB	5	39137761	Nonsense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	25306919	39137761	141777499	31	12782											
LHFPL2	10184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	77805629	77805629	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	LHFPL2	NM_005779	exon4	c.T408C	p.C136C	CAGCCCACAGACA	.	45	18	57	0	.	90	G	77805629	A	G	77805629	2	3	103	1	0	0	0	0	0	0	0	1	8765	157	6	2		2	LHFPL2	5	77805629	Silent	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	38667868	77805629	103109631	32	12783											
FBN2	2201	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127622452	127622452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FBN2	NM_001999	exon55	c.C6970T	p.P2324S	CAGGAGGGCAGAT	.	157	65	188	1	.	146	A	127622452	G	A	127622452	3	1	103	1	0	0	0	0	1	0	0	0	5703	1232	43	3	1812	3	FBN2	5	127622452	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	49816823	127622452	53292808	33	12784											
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140475012	140475012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PCDHB2	NM_018936	exon1	c.C638A	p.T213N	GGTTAACCCTCAC	.	46	15	64	0	.	96	A	140475012	C	A	140475012	3	1	103	1	0	0	0	0	1	0	0	0	11542	507	18	3	640	3	PCDHB2	5	140475012	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	12852560	140475012	40440248	34	12785											
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	167857166	167857182	+	Frame_Shift_Del	DEL	TGCAATATTAATCATCC	TGCAATATTAATCATCC	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	TGCAATATTAATCATCC	TGCAATATTAATCATCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WWC1	NM_015238	exon14	c.2025_2041del	p.675_681del	GCAATTTGCAATA	.	42	10	61	0	.	157	-	167857182	TGCAATATTAATCATCC	-	167857166	7	5	103	1	0	1	0	1	0	0	0	0	17408	1809	63	0	2079	0	WWC1	5	167857166	Frame_Shift_Del	DEL	TGCAATATTAATCATCC	TCGA-DD-A73C-01A-12D-A33K-10	27382154	167857166	13058094	35	12786											
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180661549	180661549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TRIM41	NM_033549	exon6	c.G1667A	p.G556D	CCAACGGCAAACG	.	113	45	137	0	.	226	A	180661549	G	A	180661549	3	1	103	1	0	0	0	0	1	0	0	0	16513	1203	42	3	1689	3	TRIM41	5	180661549	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	12804383	180661549	253711	36	12787											
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31860513	31860513	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	EHMT2	NM_006709	exon7	c.668-2A>T	.	CAGATCTGGAAGA	.	66	13	99	0	.	91	A	31860513	T	A	31860513	5	1	103	1	0	0	0	0	0	0	1	0	4984	1594	55	4	3058	4	EHMT2	6	31860513	Splice_Site	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10		31860513	139254554	37	12788											
SMPD2	6610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109762571	109762571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SMPD2	NM_003080	exon2	c.A62T	p.Y21F	TTCCGTACTTGAG	.	52	20	68	0	.	90	T	109762571	A	T	109762571	3	4	103	1	0	0	0	0	1	0	0	0	14805	391	14	4	68	4	SMPD2	6	109762571	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	77902058	109762571	61352496	38	12789											
TAAR2	9287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132938436	132938436	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TAAR2	NM_001033080	exon2	c.T909C	p.F303F	ATAGCCAAACCAT	.	136	46	203	0	.	91	G	132938436	A	G	132938436	2	3	103	1	0	0	0	0	0	0	0	1	15487	127	5	2		2	TAAR2	6	132938436	Silent	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	23175865	132938436	38176631	39	12790											
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	154360707	154360708	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	.	.	.	.	p.A103F	ACGAACGCCAGCA	.	103	38	83	0	.	.	TT	154360708	GC	TT	154360707	3	4	103	1	0	0	0	0	1	0	0	0	10887	1087	38	1	364	1	OPRM1	6	154360707	Missense_Mutation	DNP	GC	TCGA-DD-A73C-01A-12D-A33K-10	21422271	154360707	16754360	40	12791											
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	1589783	1589783	+	Silent	SNP	G	G	T	rs139449337	alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TMEM184A	NM_001097620	exon5	c.C528A	p.I176I	GAACCCGATGGAG	.	29	12	38	0	G|0.997;A|0.003	90	T	1589783	G	T	1589783	2	4	103	1	0	0	0	0	0	0	0	1	16101	1048	37	1		1	TMEM184A	7	1589783	Silent	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10		1589783	157548880	41	12792											
C7orf10	79783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40535937	40535937	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	C7orf10	NM_001193313	exon12	c.C1062A	p.V354V	TGGAGTCCCGTAT	.	76	24	78	0	.	24	A	40535937	C	A	40535937	2	1	103	1	0	0	0	0	0	0	0	1	2376	842	30	3		3	C7orf10	7	40535937	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	38946154	40535937	118602726	42	12793											
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95216812	95216812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PDK4	NM_002612	exon9	c.T899G	p.L300R	ATTCTCAGGGGAA	.	126	32	117	0	.	358	C	95216812	A	C	95216812	3	2	103	1	0	0	0	0	1	0	0	0	11678	188	7	5	348	5	PDK4	7	95216812	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	54680875	95216812	63921851	43	12794											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	104753453	104753453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MLL5	NM_018682	exon26	c.T5250G	p.F1750L	ACTTTTTCCTTCG	.	264	72	229	0	.	93	G	104753453	T	G	104753453	3	3	103	1	0	0	0	0	1	0	0	0	9624	1780	62	5	5348	5	MLL5	7	104753453	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	9536641	104753453	54385210	44	12795											
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142574898	142574899	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TRPV6	NM_018646	exon4	c.483_484del	p.161_162del	CACCAAAGTAGAT	.	75	39	78	0	.	92	-	142574899	AG	-	142574898	7	5	103	1	0	1	0	1	0	0	0	0	16597	72	3	0	1741	0	TRPV6	7	142574898	Frame_Shift_Del	DEL	AG	TCGA-DD-A73C-01A-12D-A33K-10	37821445	142574898	16563765	45	12796											
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24254788	24254788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ADAMDEC1	NM_014479	exon6	c.A446G	p.Y149C	GAGGATACTTCAC	.	38	22	87	0	.	228	G	24254788	A	G	24254788	3	3	103	1	0	0	0	0	1	0	0	0	254	391	14	2	468	2	ADAMDEC1	8	24254788	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10		24254788	122109234	46	12797											
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95404076	95404077	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RAD54B	NM_012415	exon10	c.1569_1570del	p.523_524del	AGAGTCCAGTGAG	.	48	19	72	0	.	539	-	95404077	CA	-	95404076	7	5	103	1	0	1	0	1	0	0	0	0	12992	603	21	0	1186	0	RAD54B	8	95404076	Frame_Shift_Del	DEL	CA	TCGA-DD-A73C-01A-12D-A33K-10	71149288	95404076	50959946	47	12798											
IFNE	338376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21481103	21481103	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	IFNE	NM_176891	exon1	c.G591A	p.K197K	CTCTTGCTTCATG	.	77	25	110	0	.	492	T	21481103	C	T	21481103	2	4	103	1	0	0	0	0	0	0	0	1	7547	796	28	3		3	IFNE	9	21481103	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		21481103	119732328	48	12799											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	32543942	32543942	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TOPORS	NM_005802	exon3	c.C581G	p.S194X	CTAGGTGAATACA	.	106	32	102	0	.	230	C	32543942	G	C	32543942	4	2	103	1	0	0	0	0	0	1	0	0	16367	1294	45	4	2560	4	TOPORS	9	32543942	Nonsense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	11062839	32543942	108669489	49	12800											
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114469021	114469021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	C9orf84	NM_173521	exon18	c.G2372C	p.S791T	CAGGAACTTGTAC	.	39	11	52	0	.	92	G	114469021	C	G	114469021	3	3	103	1	0	0	0	0	1	0	0	0	2500	565	20	4	1998	4	C9orf84	9	114469021	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	81925079	114469021	26744410	50	12801											
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13234349	13234349	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MCM10	NM_182751	exon12	c.C1614G	p.A538A	TTTAGCCAAAGCC	.	77	24	75	0	.	653	G	13234349	C	G	13234349	2	3	103	1	0	0	0	0	0	0	0	1	9385	581	21	4		4	MCM10	10	13234349	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		13234349	122300398	51	12802											
AP3M1	26985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75896531	75896531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	AP3M1	NM_012095	exon3	c.A304G	p.I102V	CCTTAATTGCAGC	.	108	39	118	0	.	90	C	75896531	T	C	75896531	3	2	103	1	0	0	0	0	1	0	0	0	747	1493	52	2	980	2	AP3M1	10	75896531	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	62662182	75896531	59638216	52	12803											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124352076	124352076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	DMBT1	NM_007329	exon20	c.G2465C	p.C822S	ACAACTGTGGCCA	.	61	21	57	0	.	494	C	124352076	G	C	124352076	3	2	103	1	0	0	0	0	1	0	0	0	4577	1377	48	4	2543	4	DMBT1	10	124352076	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	48455545	124352076	11182671	53	12804											
PTPRE	5791	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129854474	129854474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PTPRE	NM_006504	exon7	c.C508A	p.P170T	ATCCTTCCCAGTA	.	37	5	46	0	.	227	A	129854474	C	A	129854474	3	1	103	1	0	0	0	0	1	0	0	0	12800	855	30	3	565	3	PTPRE	10	129854474	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	5502398	129854474	5680273	54	12805											
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7335070	7335070	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SYT9	NM_175733	exon3	c.T942C	p.S314S	GTTCTCTCGTCAT	.	77	30	84	0	.	155	C	7335070	T	C	7335070	2	2	103	1	0	0	0	0	0	0	0	1	15478	1538	54	2		2	SYT9	11	7335070	Silent	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10		7335070	127671446	55	12806											
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	45948990	45948990	+	Missense_Mutation	SNP	C	C	T	rs148997856		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GYLTL1B	NM_152312	exon11	c.C1450T	p.R484W	GCTGCCCGGCAGG	.	102	6	105	0	C|1.000;T|0.000	92	T	45948990	C	T	45948990	3	4	103	1	0	0	0	0	1	0	0	0	6907	643	23	1	1488	1	GYLTL1B	11	45948990	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	38613920	45948990	89057526	56	12807											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46880821	46880821	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	LRP4	NM_002334	exon38	c.G5431T	p.E1811X	TTCCCTCTACGAT	.	82	25	88	0	.	94	A	46880821	C	A	46880821	4	1	103	1	0	0	0	0	0	1	0	0	8959	922	32	3	290	3	LRP4	11	46880821	Nonsense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	931831	46880821	88125695	57	12808											
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64434903	64434903	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	NRXN2	NM_015080	exon9	c.G1617A	p.G539G	TCCACCCCCAGCC	.	70	6	71	0	.	232	T	64434903	C	T	64434903	2	4	103	1	0	0	0	0	0	0	0	1	10666	610	22	3		3	NRXN2	11	64434903	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	17554082	64434903	70571613	58	12809											
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65423177	65423177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RELA	NM_021975	exon10	c.G1015A	p.A339T	CAGAAGCTGAGCT	.	42	14	55	0	.	872	T	65423177	C	T	65423177	3	4	103	1	0	0	0	0	1	0	0	0	13216	797	28	3	648	3	RELA	11	65423177	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	988274	65423177	69583339	59	12810											
AMOTL1	154810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94533439	94533439	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	AMOTL1	NM_130847	exon3	c.C1083T	p.V361V	GGCCGTCCTGCGG	.	51	13	63	0	.	91	T	94533439	C	T	94533439	2	4	103	1	0	0	0	0	0	0	0	1	583	842	30	3		3	AMOTL1	11	94533439	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	29110262	94533439	40473077	60	12811											
CUL5	8065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107923507	107923507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CUL5	NM_003478	exon5	c.A532G	p.I178V	CTGGTTATTGGAG	.	53	20	74	0	.	227	G	107923507	A	G	107923507	3	3	103	1	0	0	0	0	1	0	0	0	4059	449	16	2	550	2	CUL5	11	107923507	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	13390068	107923507	27083009	61	12812											
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115111039	115111039	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CADM1	NM_014333	exon2	c.C226T	p.L76L	TCAGTAGCTGAAT	.	88	20	119	0	.	92	A	115111039	G	A	115111039	2	1	103	1	0	0	0	0	0	0	0	1	2566	962	34	3		3	CADM1	11	115111039	Silent	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	7187532	115111039	19895477	62	12813											
RECQL	5965	broad.mit.edu;bcgsc.ca	37	12	21630878	21630878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RECQL	NM_032941	exon8	c.G726A	p.K242K	CTGCCGCTTTAAG	.	119	7	92	1	.	228	T	21630878	C	T	21630878	2	4	103	1	0	0	0	0	0	0	0	1	13201	796	28	3		3	RECQL	12	21630878	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		21630878	112221017	63	12814											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56081838	56081841	+	Frame_Shift_Del	DEL	CTGC	CTGC	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	CTGC	CTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ITGA7	NM_001144996	exon24	c.3109_3112del	p.1037_1038del	CTCCTTCTGCCAC	.	97	26	139	0	.	229	-	56081841	CTGC	-	56081838	7	5	103	1	0	1	0	1	0	0	0	0	7881	922	32	0	321	0	ITGA7	12	56081838	Frame_Shift_Del	DEL	CTGC	TCGA-DD-A73C-01A-12D-A33K-10	34450960	56081838	77770057	64	12815											
ORMDL2	29095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56214115	56214116	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ORMDL2	NM_014182	exon4	c.398_399del	p.133_133del	TGCTAAGTGTACT	.	142	36	179	0	.	68	-	56214116	GT	-	56214115	7	5	103	1	0	1	0	1	0	0	0	0	11270	1029	36	0	408	0	ORMDL2	12	56214115	Frame_Shift_Del	DEL	GT	TCGA-DD-A73C-01A-12D-A33K-10	132277	56214115	77637780	65	12816											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121416899	121416899	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	HNF1A	NM_000545	exon1	c.326+2T>A	.	CTGCAGTAAGGAG	.	68	13	66	0	.	1745	A	121416899	T	A	121416899	5	1	103	1	0	0	0	0	0	0	1	0	7251	1652	57	4	330	4	HNF1A	12	121416899	Splice_Site	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	65202784	121416899	12434996	66	12817											
ATP12A	479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25284610	25284610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ATP12A	NM_001185085	exon20	c.A2794G	p.R932G	TACCAGAGGGAAT	.	153	45	162	0	.	137	G	25284610	A	G	25284610	3	3	103	1	0	0	0	0	1	0	0	0	1122	295	11	2	2872	2	ATP12A	13	25284610	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10		25284610	89885268	67	12818											
HEATR4	399671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73964942	73964942	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	HEATR4	NM_203309	exon13	c.C2463A	p.I821I	GGCTAGGATGCTA	.	102	41	102	0	.	91	T	73964942	G	T	73964942	2	4	103	1	0	0	0	0	0	0	0	1	7030	1164	41	3		3	HEATR4	14	73964942	Silent	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10		73964942	33384598	68	12819											
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78184553	78184553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SNW1	NM_012245	exon14	c.G1489T	p.D497Y	AAGGATCTTCCTC	.	108	35	134	0	.	187	A	78184553	C	A	78184553	3	1	103	1	0	0	0	0	1	0	0	0	14879	913	32	3	125	3	SNW1	14	78184553	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	4219611	78184553	29164987	69	12820											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96779439	96779439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ATG2B	NM_018036	exon25	c.A3805C	p.S1269R	CGCTACTGGAAAC	.	67	11	71	0	.	93	G	96779439	T	G	96779439	3	3	103	1	0	0	0	0	1	0	0	0	1094	1580	55	5	2503	5	ATG2B	14	96779439	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	18594886	96779439	10570101	70	12821											
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65489133	65489133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CILP	NM_003613	exon9	c.G3491T	p.R1164L	CCCTGGCGCTGGC	.	51	18	65	0	.	97	A	65489133	C	A	65489133	3	1	103	1	0	0	0	0	1	0	0	0	3429	768	27	1	67	1	CILP	15	65489133	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		65489133	37042259	71	12822											
AGBL1	123624	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86807754	86807754	+	Missense_Mutation	SNP	C	C	A	rs79186009		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	.	NM_152336	exon10	c.C1214A	p.S405Y	GAGATTCTTCTGA	.	87	32	99	0	C|0.997;A|0.003	.	A	86807754	C	A	86807754	3	1	103	1	0	0	0	0	1	0	0	0	375	913	32	3	1248	3	AGBL1	15	86807754	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	21318621	86807754	15723638	72	12823											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9862753	9862753	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GRIN2A	NM_000833	exon13	c.G2550A	p.T850T	CACGCCCGTGAAA	.	39	13	44	0	.	349	T	9862753	C	T	9862753	2	4	103	1	0	0	0	0	0	0	0	1	6779	639	23	1		1	GRIN2A	16	9862753	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		9862753	80492000	73	12824											
TAOK2	9344	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30002417	30002417	+	Missense_Mutation	SNP	G	G	A	rs138889090		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TAOK2	NM_004783	exon19	c.G2678A	p.R893H	GAATCCGCAGTCT	.	30	4	31	0	G|1.000;A|0.000	521	A	30002417	G	A	30002417	3	1	103	1	0	0	0	0	1	0	0	0	15545	1087	38	1	4224	1	TAOK2	16	30002417	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	20139664	30002417	60352336	74	12825											
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74919609	74919609	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WDR59	NM_030581	exon25	c.G2631A	p.E877E	TCGCTTCTCTCTC	.	113	39	99	0	.	92	T	74919609	C	T	74919609	2	4	103	1	0	0	0	0	0	0	0	1	17305	912	32	3		3	WDR59	16	74919609	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	44917192	74919609	15435144	75	12826											
OR1G1	8390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3030650	3030650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	OR1G1	NM_003555	exon1	c.C196T	p.L66F	GGGAGAGGTTGGC	.	71	20	81	0	.	68	A	3030650	G	A	3030650	3	1	103	1	0	0	0	0	1	0	0	0	10957	1000	35	3	749	3	OR1G1	17	3030650	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10		3030650	78164560	76	12827											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4442761	4442761	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MYBBP1A	NM_014520	exon26	c.T3936G	p.L1312L	ACTCTGAAGCAGG	.	68	24	65	0	.	92	C	4442761	A	C	4442761	2	2	103	1	0	0	0	0	0	0	0	1	10008	233	9	5		5	MYBBP1A	17	4442761	Silent	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	1412111	4442761	76752449	77	12828											
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40556905	40556905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PTRF	NM_012232	exon2	c.G973A	p.V325I	TCTTGACGTGGAA	.	101	35	107	0	.	153	T	40556905	C	T	40556905	3	4	103	1	0	0	0	0	1	0	0	0	12815	536	19	1	203	1	PTRF	17	40556905	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	36114144	40556905	40638305	78	12829											
EZH1	2145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40872423	40872423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	EZH1	NM_001991	exon7	c.G532C	p.E178Q	CCAACTCCAGAAA	.	81	28	84	0	.	229	G	40872423	C	G	40872423	3	3	103	1	0	0	0	0	1	0	0	0	5333	864	30	4	1771	4	EZH1	17	40872423	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	315518	40872423	40322787	79	12830											
HEATR6	63897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58121003	58121003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	HEATR6	NM_022070	exon20	c.G3467T	p.G1156V	AAAAAGCCCATGA	.	105	46	134	1	.	227	A	58121003	C	A	58121003	3	1	103	1	0	0	0	0	1	0	0	0	7033	739	26	3	82	3	HEATR6	17	58121003	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	17248580	58121003	23074207	80	12831											
KATNAL2	83473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44593424	44593424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	KATNAL2	NM_031303	exon8	c.G543T	p.W181C	AAAGTGGAATGAC	.	58	19	69	0	.	93	T	44593424	G	T	44593424	3	4	103	1	0	0	0	0	1	0	0	0	7986	1183	41	3	569	3	KATNAL2	18	44593424	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10		44593424	33483824	81	12832											
PTBP1	5725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	804341	804341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PTBP1	NM_031990	exon5	c.A338G	p.Y113C	TGAACTACTACAC	.	44	15	36	0	.	227	G	804341	A	G	804341	3	3	103	1	0	0	0	0	1	0	0	0	12725	391	14	2	356	2	PTBP1	19	804341	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10		804341	58324642	82	12833											
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	966608	966608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ARID3A	NM_005224	exon7	c.G1235T	p.R412L	CTGGCCGCCTGCC	.	82	11	113	0	.	90	T	966608	G	T	966608	3	4	103	1	0	0	0	0	1	0	0	0	916	1087	38	1	1257	1	ARID3A	19	966608	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	162267	966608	58162375	83	12834											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35501096	35501096	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GRAMD1A	NM_020895	exon5	c.C426G	p.T142T	GGAGACCACGGTG	.	53	19	84	0	.	90	G	35501096	C	G	35501096	2	3	103	1	0	0	0	0	0	0	0	1	6747	581	21	4		4	GRAMD1A	19	35501096	Silent	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	34534488	35501096	23627887	84	12835											
KPTN	11133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47984228	47984228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	KPTN	NM_007059	exon5	c.A512G	p.H171R	TAGAGATGAATGG	.	90	21	81	0	.	91	C	47984228	T	C	47984228	3	2	103	1	0	0	0	0	1	0	0	0	8437	1464	51	2	830	2	KPTN	19	47984228	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	12483132	47984228	11144755	85	12836											
IRF3	3661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50167999	50167999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	IRF3	NM_001197122	exon2	c.C97T	p.R33C	GGAAGCGCGTGCG	.	63	12	67	0	.	92	A	50167999	G	A	50167999	3	1	103	1	0	0	0	0	1	0	0	0	7831	1087	38	1	1214	1	IRF3	19	50167999	Missense_Mutation	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	2183771	50167999	8960984	86	12837											
CCT8	10694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30439333	30439333	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CCT8	NM_006585	exon5	c.A441G	p.V147V	ACAACATACCAAA	.	157	46	212	1	.	90	C	30439333	T	C	30439333	2	2	103	1	0	0	0	0	0	0	0	1	2960	1393	49	2		2	CCT8	21	30439333	Silent	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10		30439333	17690562	87	12838											
CRYZL1	9946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35003837	35003837	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CRYZL1	NM_145858	exon2	c.A21G	p.Q7Q	ACTCTGTTGGAAA	.	257	92	319	0	.	90	C	35003837	T	C	35003837	2	2	103	1	0	0	0	0	0	0	0	1	3923	1722	60	2		2	CRYZL1	21	35003837	Silent	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	4564504	35003837	13126058	88	12839											
POTEH	23784	broad.mit.edu;bcgsc.ca	37	22	16267054	16267055	+	Missense_Mutation	DNP	TC	TC	GT	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	.	.	.	.	p.G465D	TGGGAATCCCATA	.	920	58	978	1	.	.	GT	16267055	TC	GT	16267054	3	3	103	1	0	0	0	0	1	0	0	0	12267	1422	50	5	250	5	POTEH	22	16267054	Missense_Mutation	DNP	TC	TCGA-DD-A73C-01A-12D-A33K-10		16267054	35037512	89	12840											
NHS	4810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17746802	17746802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	NHS	NM_198270	exon7	c.C4193T	p.P1398L	TTTCACCACTTAG	.	243	96	233	0	.	197	T	17746802	C	T	17746802	3	4	103	1	0	0	0	0	1	0	0	0	10411	594	21	3	4324	3	NHS	23	17746802	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10		17746802	137523758	90	12841											
CNKSR2	22866	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	21515935	21515935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CNKSR2	NM_001168647	exon7	c.C712A	p.L238I	GATGGCCTCCATG	.	283	16	312	1	.	625	A	21515935	C	A	21515935	3	1	103	1	0	0	0	0	1	0	0	0	3607	681	24	3	738	3	CNKSR2	23	21515935	Missense_Mutation	SNP	C	TCGA-DD-A73C-01A-12D-A33K-10	3769133	21515935	133754625	91	12842											
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48933031	48933031	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WDR45	NM_007075	exon10	c.C822T	p.R274R	GGAGCGGCGGTTG	.	118	35	146	0	.	131	A	48933031	G	A	48933031	2	1	103	1	0	0	0	0	0	0	0	1	17294	1190	42	3		3	WDR45	23	48933031	Silent	SNP	G	TCGA-DD-A73C-01A-12D-A33K-10	27417096	48933031	106337529	92	12843											
FAM46D	169966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79698133	79698133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FAM46D	NM_001170574	exon5	c.A95T	p.N32I	AGGGGAATTTCCC	.	135	52	191	0	.	130	T	79698133	A	T	79698133	3	4	103	1	0	0	0	0	1	0	0	0	5568	101	4	4	97	4	FAM46D	23	79698133	Missense_Mutation	SNP	A	TCGA-DD-A73C-01A-12D-A33K-10	30765102	79698133	75572427	93	12844											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	123176443	123176451	+	In_Frame_Del	DEL	GACATATGC	GACATATGC	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	GACATATGC	GACATATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	STAG2	NM_001042749	exon7	c.410_418del	p.137_140del	TGTTTAGACATAT	.	347	79	448	0	.	134	-	123176451	GACATATGC	-	123176443	7	5	103	1	0	1	0	1	0	0	0	0	15242	942	33	0	428	0	STAG2	23	123176443	In_Frame_Del	DEL	GACATATGC	TCGA-DD-A73C-01A-12D-A33K-10	43478310	123176443	32094117	94	12845											
GPC3	2719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	132887923	132887923	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GPC3	NM_001164617	exon3	c.A618C	p.K206N	AAATACTTTCAGG	.	199	11	199	0	.	847	G	132887923	T	G	132887923	3	3	103	1	0	0	0	0	1	0	0	0	6599	1606	56	5	1221	5	GPC3	23	132887923	Missense_Mutation	SNP	T	TCGA-DD-A73C-01A-12D-A33K-10	9711480	132887923	22382637	95	12846											
SLC25A34	284723	broad.mit.edu;bcgsc.ca	37	1	16064682	16064682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SLC25A34	NM_207348	exon3	c.G539T	p.G180V	TGGTGGGCTCAGC	.	73	35	54	2	.	68	T	16064682	G	T	16064682	3	4	104	1	0	0	0	0	1	0	0	0	14498	1203	42	3	549	3	SLC25A34	1	16064682	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10		16064682	233185939	1	12847											
FAAH	2166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46867761	46867761	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FAAH	NM_001441	exon2	c.196-2A>G	.	CCCCACAGAACCC	.	72	27	66	0	.	154	G	46867761	A	G	46867761	5	3	104	1	0	0	0	0	0	0	1	0	5353	202	7	2	200	2	FAAH	1	46867761	Splice_Site	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	30803079	46867761	202382860	2	12848											
LDLRAD1	388633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54477846	54477846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LDLRAD1	NM_001010978	exon4	c.C310T	p.H104Y	CGCCGTGGGTACA	.	22	13	27	0	.	137	A	54477846	G	A	54477846	3	1	104	1	0	0	0	0	1	0	0	0	8705	1348	47	3	319	3	LDLRAD1	1	54477846	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	7610085	54477846	194772775	3	12849											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	144868027	144868027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PDE4DIP	NM_014644	exon33	c.C5412A	p.Y1804X	GCCCAGGTACCCA	.	223	79	159	0	.	663	T	144868027	G	T	144868027	4	4	104	1	0	0	0	0	0	1	0	0	11643	1256	44	3	1676	3	PDE4DIP	1	144868027	Nonsense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	90390181	144868027	104382594	4	12850											
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	151105186	151105186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SEMA6C	NM_001178061	exon20	c.G2663A	p.G888D	CGGTGGCCGGAGA	.	108	27	52	0	.	92	T	151105186	C	T	151105186	3	4	104	1	0	0	0	0	1	0	0	0	14041	739	26	3	229	3	SEMA6C	1	151105186	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	6237159	151105186	98145435	5	12851											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517298	158517298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR6Y1	NM_001005189	exon1	c.G598T	p.A200S	TCTCAGCCTGTGA	.	130	67	61	0	.	69	A	158517298	C	A	158517298	3	1	104	1	0	0	0	0	1	0	0	0	11213	739	26	3	381	3	OR6Y1	1	158517298	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	7412112	158517298	90733323	6	12852											
CDC73	79577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193111054	193111054	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CDC73	NM_024529	exon7	c.C587G	p.T196S	GATCTACTATCAA	.	225	41	119	1	.	1009	G	193111054	C	G	193111054	3	3	104	1	0	0	0	0	1	0	0	0	3085	565	20	4	613	4	CDC73	1	193111054	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	34593756	193111054	56139567	7	12853											
LHX9	56956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197896793	197896793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LHX9	NM_020204	exon4	c.G806A	p.R269H	CCAAGCGCATGCG	.	215	114	93	0	.	91	A	197896793	G	A	197896793	3	1	104	1	0	0	0	0	1	0	0	0	8777	1087	38	1	852	1	LHX9	1	197896793	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	4785739	197896793	51353828	8	12854											
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220791830	220791830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MARK1	NM_018650	exon8	c.G731T	p.G244V	GTCTGGGCGTCAT	.	163	36	104	0	.	802	T	220791830	G	T	220791830	3	4	104	1	0	0	0	0	1	0	0	0	9312	1203	42	3	761	3	MARK1	1	220791830	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	22895037	220791830	28458791	9	12855											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224009040	224009040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TP53BP2	NM_001031685	exon2	c.T57G	p.N19K	CTGCTCATTGTTA	.	135	65	70	0	.	229	C	224009040	A	C	224009040	3	2	104	1	0	0	0	0	1	0	0	0	16381	214	8	5	3415	5	TP53BP2	1	224009040	Missense_Mutation	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	3217210	224009040	25241581	10	12856											
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241667442	241667442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FH	NM_000143	exon7	c.G1008A	p.M336I	TATCTTCATCAGA	.	213	109	98	0	.	416	T	241667442	C	T	241667442	3	4	104	1	0	0	0	0	1	0	0	0	5875	826	29	3	540	3	FH	1	241667442	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	17658402	241667442	7583179	11	12857	73	2									
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241667444	241667444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FH	NM_000143	exon7	c.A1006C	p.M336L	TCTTCATCAGACT	.	215	110	94	0	.	416	G	241667444	T	G	241667444	3	3	104	1	0	0	0	0	1	0	0	0	5875	1435	50	5	542	5	FH	1	241667444	Missense_Mutation	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10	2	241667444	7583177	12	12858	73	2									
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116503668	116503668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DPP10	NM_001178034	exon10	c.C871G	p.Q291E	GCAGGTCAAGTGA	.	106	61	74	0	.	142	G	116503668	C	G	116503668	3	3	104	1	0	0	0	0	1	0	0	0	4727	827	29	4	1068	4	DPP10	2	116503668	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10		116503668	126695705	13	12859											
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160289818	160289818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	BAZ2B	NM_013450	exon9	c.C1350G	p.S450R	CTTCAGGCTCTTC	.	80	26	60	1	.	94	C	160289818	G	C	160289818	3	2	104	1	0	0	0	0	1	0	0	0	1332	1194	42	4	5272	4	BAZ2B	2	160289818	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	43786150	160289818	82909555	14	12860											
SP3	6670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174820570	174820570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SP3	NM_003111	exon4	c.A670G	p.I224V	TCTGGATGTTAGC	.	103	68	62	0	.	227	C	174820570	T	C	174820570	3	2	104	1	0	0	0	0	1	0	0	0	14965	1464	51	2	1691	2	SP3	2	174820570	Missense_Mutation	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10	14530752	174820570	68378803	15	12861											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560965	179560965	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TTN	NM_001267550	exon114	c.T30834C	p.A10278A	TTCTTCAGCTTTA	.	82	49	71	0	.	636	G	179560965	A	G	179560965	2	3	104	1	0	0	0	0	0	0	0	1	16732	175	7	2		2	TTN	2	179560965	Silent	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	4740395	179560965	63638408	16	12862											
STAT1	6772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191872330	191872330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	STAT1	NM_007315	exon5	c.G331A	p.E111K	TTTCTTCCTTCAG	.	133	78	83	2	.	1335	T	191872330	C	T	191872330	3	4	104	1	0	0	0	0	1	0	0	0	15263	864	30	3	2009	3	STAT1	2	191872330	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	12311365	191872330	51327043	17	12863											
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231931711	231931711	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PSMD1	NM_002807	exon5	c.C396T	p.G132G	GGAAGGCATCGTA	.	112	14	85	0	.	92	T	231931711	C	T	231931711	2	4	104	1	0	0	0	0	0	0	0	1	12692	697	25	3		3	PSMD1	2	231931711	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	40059381	231931711	11267662	18	12864											
OSBPL10	114884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	31725509	31725509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OSBPL10	NM_017784	exon8	c.G1343T	p.G448V	GTGGCCCCAGCGG	.	49	28	55	1	.	69	A	31725509	C	A	31725509	3	1	104	1	0	0	0	0	1	0	0	0	11275	623	22	3	971	3	OSBPL10	3	31725509	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10		31725509	166296921	19	12865											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	145	82	106	0	.	24361	G	41266098	A	G	41266098	3	3	104	1	0	0	0	0	1	0	0	0	4016	275	10	2	101	2	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	9540589	41266098	156756332	20	12866											
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49152516	49152516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	USP19	NM_001199161	exon14	c.G2057T	p.G686V	GCATAGCCTGTGA	.	65	30	55	1	.	663	A	49152516	C	A	49152516	3	1	104	1	0	0	0	0	1	0	0	0	17047	739	26	3	2264	3	USP19	3	49152516	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	7886418	49152516	148869914	21	12867											
MAPKAPK3	7867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50677796	50677796	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MAPKAPK3	NM_001243926	exon5	c.220-1G>A	.	CCTACAGCTCCTG	.	79	36	78	0	.	1423	A	50677796	G	A	50677796	5	1	104	1	0	0	0	0	0	0	1	0	9290	985	34	3	225	3	MAPKAPK3	3	50677796	Splice_Site	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	1525280	50677796	147344634	22	12868											
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	157098983	157098983	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	VEPH1	NM_001167911	exon7	c.T1089G	p.L363L	TCGGGTAAGGAGT	.	104	43	85	0	.	155	C	157098983	A	C	157098983	2	2	104	1	0	0	0	0	0	0	0	1	17151	349	13	5		5	VEPH1	3	157098983	Silent	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	106421187	157098983	40923447	23	12869											
CPEB2	132864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15067830	15067830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CPEB2	NM_001177382	exon12	c.C2931T	p.G977G	CCAGGGCGCACGC	.	119	42	113	0	.	91	T	15067830	C	T	15067830	2	4	104	1	0	0	0	0	0	0	0	1	3801	755	27	1		1	CPEB2	4	15067830	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10		15067830	176086446	24	12870											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55604594	55604594	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIT	NM_000222	exon21	c.2803-1G>T	.	TCTCCAGATTTAC	.	69	31	87	0	.	20166	T	55604594	G	T	55604594	5	4	104	1	0	0	0	0	0	0	1	0	8329	956	33	3	2884	3	KIT	4	55604594	Splice_Site	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	40536764	55604594	135549682	25	12871											
PRDM5	11107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121732583	121732583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRDM5	NM_018699	exon8	c.T887C	p.I296T	GAACATATAAGCT	.	152	64	160	1	.	91	G	121732583	A	G	121732583	3	3	104	1	0	0	0	0	1	0	0	0	12460	449	16	2	1041	2	PRDM5	4	121732583	Missense_Mutation	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	66127989	121732583	69421693	26	12872											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701140	16701140	+	Missense_Mutation	SNP	G	G	A	rs138565696		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MYO10	NM_012334	exon25	c.C3364T	p.R1122C	AGCAGCGGTAGTC	.	81	29	76	0	G|0.999;A|0.000	3	A	16701140	G	A	16701140	3	1	104	1	0	0	0	0	1	0	0	0	10062	1116	39	1	2880	1	MYO10	5	16701140	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10		16701140	164214120	27	12873											
CDC20B	166979	broad.mit.edu;bcgsc.ca	37	5	54420777	54420777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CDC20B	NM_001170402	exon9	c.G1069T	p.A357S	ACACAGCTTGCTT	.	64	5	80	0	.	90	A	54420777	C	A	54420777	3	1	104	1	0	0	0	0	1	0	0	0	3060	797	28	3	506	3	CDC20B	5	54420777	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	37719637	54420777	126494483	28	12874											
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140741917	140741917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PCDHGB2	NM_018923	exon1	c.G2215T	p.V739F	CCTGGGGTTCTCC	.	78	26	85	1	.	33	T	140741917	G	T	140741917	3	4	104	1	0	0	0	0	1	0	0	0	11563	1261	44	3	2217	3	PCDHGB2	5	140741917	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	86321140	140741917	40173343	29	12875											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	157065387	157065387	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SOX30	NM_178424	exon4	c.T1731A	p.S577R	TGGAGCACTTCTG	.	87	38	60	0	.	91	T	157065387	A	T	157065387	3	4	104	1	0	0	0	0	1	0	0	0	14952	156	6	4	538	4	SOX30	5	157065387	Missense_Mutation	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	16323470	157065387	23849873	30	12876											
HIST1H1C	3006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26056179	26056179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	HIST1H1C	NM_005319	exon1	c.A478G	p.K160E	CCGGCTTCTTCGC	.	328	254	122	2	.	231	C	26056179	T	C	26056179	3	2	104	1	0	0	0	0	1	0	0	0	7124	1792	62	2	167	2	HIST1H1C	6	26056179	Missense_Mutation	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10		26056179	145058888	31	12877											
RNF39	80352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30043421	30043421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	RNF39	NM_025236	exon1	c.C146T	p.A49V	GAGCGCGCAGATG	.	151	8	69	0	.	226	A	30043421	G	A	30043421	3	1	104	1	0	0	0	0	1	0	0	0	13491	1087	38	1	1132	1	RNF39	6	30043421	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	3987242	30043421	141071646	32	12878											
IER3	8870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30712289	30712289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IER3	NM_003897	exon1	c.C7T	p.H3Y	GAGAGTGACACAT	.	135	105	71	0	.	90	A	30712289	G	A	30712289	3	1	104	1	0	0	0	0	1	0	0	0	7506	1290	45	3	471	3	IER3	6	30712289	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	668868	30712289	140402778	33	12879											
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88854115	88854115	+	Silent	SNP	C	C	T	rs35057475		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CNR1	NM_001160258	exon4	c.G879A	p.A293A	CATGTACGCATAC	.	47	20	45	0	C|0.987;T|0.013	92	T	88854115	C	T	88854115	2	4	104	1	0	0	0	0	0	0	0	1	3631	523	19	1		1	CNR1	6	88854115	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	58141826	88854115	82260952	34	12880											
GLI3	2737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42017201	42017201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GLI3	NM_000168	exon12	c.G1768T	p.A590S	CAGAGGCATTTGA	.	178	117	114	1	.	1149	A	42017201	C	A	42017201	3	1	104	1	0	0	0	0	1	0	0	0	6439	710	25	3	2990	3	GLI3	7	42017201	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10		42017201	117121462	35	12881											
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126086303	126086303	+	Missense_Mutation	SNP	G	G	A	rs139289550		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GRM8	NM_000845	exon9	c.C2554T	p.R852C	TCTTGCGTTTTTG	.	76	32	78	0	G|1.000;A|0.000	581	A	126086303	G	A	126086303	3	1	104	1	0	0	0	0	1	0	0	0	6803	1145	40	1	230	1	GRM8	7	126086303	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	84069102	126086303	33052360	36	12882											
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126044596	126044596	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIAA0196	NM_014846	exon27	c.A3222T	p.P1074P	AAGTGGTGGCCAA	.	89	30	82	0	.	92	A	126044596	T	A	126044596	2	1	104	1	0	0	0	0	0	0	0	1	8161	1683	59	4		4	KIAA0196	8	126044596	Silent	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10		126044596	20319426	37	12883											
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140631270	140631270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KCNK9	NM_016601	exon2	c.C356A	p.P119Q	GTCAGCGGGATGC	.	90	30	59	0	.	93	T	140631270	G	T	140631270	3	4	104	1	0	0	0	0	1	0	0	0	8072	1116	39	1	772	1	KCNK9	8	140631270	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	14586674	140631270	5732752	38	12884											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131339464	131339464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SPTAN1	NM_003127	exon7	c.A842G	p.D281G	CCTCTGATGATTT	.	67	33	64	0	.	158	G	131339464	A	G	131339464	3	3	104	1	0	0	0	0	1	0	0	0	15116	333	12	2	864	2	SPTAN1	9	131339464	Missense_Mutation	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10		131339464	9873967	39	12885											
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22607754	22607754	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	COMMD3	NM_012071	exon6	c.T431G	p.M144R	ATAGGATGTACAG	.	315	60	157	0	.	115	G	22607754	T	G	22607754	3	3	104	1	0	0	0	0	1	0	0	0	3717	1464	51	5	453	5	COMMD3	10	22607754	Missense_Mutation	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10		22607754	112926993	40	12886											
FAM24A	118670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124672364	124672364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FAM24A	NM_001029888	exon3	c.C212G	p.T71S	AAGCCACCACCAT	.	96	44	76	0	.	92	G	124672364	C	G	124672364	3	3	104	1	0	0	0	0	1	0	0	0	5547	507	18	4	218	4	FAM24A	10	124672364	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	102064610	124672364	10862383	41	12887											
DCHS1	8642	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6661102	6661102	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DCHS1	NM_003737	exon2	c.T1743C	p.T581T	GTAGAAAGTCCTC	.	47	19	65	1	.	73	G	6661102	A	G	6661102	2	3	104	1	0	0	0	0	0	0	0	1	4287	59	3	2		2	DCHS1	11	6661102	Silent	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10		6661102	128345414	42	12888											
CHRM4	1132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46407538	46407538	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_000741	exon1	c.G570C	p.L190L	GTTGGACAGGAAC	.	80	38	67	0	.	.	G	46407538	C	G	46407538	2	3	104	1	0	0	0	0	0	0	0	1	3379	465	17	4		4	CHRM4	11	46407538	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	39746436	46407538	88598978	43	12889											
OR9G4	283189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56510613	56510613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR9G4	NM_001005284	exon1	c.C675A	p.S225R	AAGAATGCTGGAG	.	50	25	54	0	.	71	T	56510613	G	T	56510613	3	4	104	1	0	0	0	0	1	0	0	0	11251	1310	46	3	311	3	OR9G4	11	56510613	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	10103075	56510613	78495903	44	12890											
EML3	256364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62373664	62373664	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	EML3	NM_153265	exon13	c.G1527A	p.Q509Q	GTGAGCCTGGGCC	.	66	23	66	0	.	91	T	62373664	C	T	62373664	2	4	104	1	0	0	0	0	0	0	0	1	5098	680	24	3		3	EML3	11	62373664	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	5863051	62373664	72632852	45	12891											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117864027	117864027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IL10RA	NM_001558	exon4	c.A439T	p.R147W	CTACCCAGGCCCA	.	65	26	48	0	.	91	T	117864027	A	T	117864027	3	4	104	1	0	0	0	0	1	0	0	0	7620	179	7	4	453	4	IL10RA	11	117864027	Missense_Mutation	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	55490363	117864027	17142489	46	12892											
TRIM29	23650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120008342	120008342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TRIM29	NM_012101	exon1	c.C398T	p.S133L	GACTCCGAGAAAA	.	29	10	43	0	.	291	A	120008342	G	A	120008342	3	1	104	1	0	0	0	0	1	0	0	0	16500	1059	37	1	1404	1	TRIM29	11	120008342	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	2144315	120008342	14998174	47	12893											
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124440804	124440804	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR8A1	NM_001005194	exon1	c.A840C	p.T280T	CTCCACAATCAGT	.	86	39	74	0	.	69	C	124440804	A	C	124440804	2	2	104	1	0	0	0	0	0	0	0	1	11225	117	5	5		5	OR8A1	11	124440804	Silent	SNP	A	TCGA-DD-A73D-01A-12D-A32G-10	4432462	124440804	10565712	48	12894											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46215247	46215247	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ARID2	NM_152641	exon6	c.682delA	p.K228fs	AAAGAGAAGACTG	.	417	184	387	0	.	100	-	46215247	A	-	46215247	7	5	104	1	0	1	0	1	0	0	0	0	915	247	9	0	704	0	ARID2	12	46215247	Frame_Shift_Del	DEL	A	TCGA-DD-A73D-01A-12D-A32G-10		46215247	87636648	49	12895											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	67701255	67701255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CAND1	NM_018448	exon11	c.3008delT	p.L1003fs	ATCCACTGTTAAA	.	87	46	95	0	.	516	-	67701255	T	-	67701255	7	5	104	1	0	1	0	1	0	0	0	0	2615	1580	55	0	3050	0	CAND1	12	67701255	Frame_Shift_Del	DEL	T	TCGA-DD-A73D-01A-12D-A32G-10	21486008	67701255	66150640	50	12896											
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122687883	122687883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LRRC43	NM_001098519	exon12	c.C1865T	p.P622L	TGATTCCGATCTA	.	22	9	26	0	.	135	T	122687883	C	T	122687883	3	4	104	1	0	0	0	0	1	0	0	0	9001	652	23	1	1911	1	LRRC43	12	122687883	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	54986628	122687883	11164012	51	12897											
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113803570	113803570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	F10	NM_000504	exon8	c.G1206A	p.M402I	GAACATGTTCTGT	.	69	34	71	0	.	227	A	113803570	G	A	113803570	3	1	104	1	0	0	0	0	1	0	0	0	5336	1377	48	3	1236	3	F10	13	113803570	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10		113803570	1366308	52	12898											
IRF9	10379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24631525	24631526	+	Missense_Mutation	DNP	TT	TT	GC	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	p.F58A	GCTGCCTTCTTCA	.	52	17	65	0	.	.	GC	24631526	TT	GC	24631525	3	3	104	1	0	0	0	0	1	0	0	0	7837	1609	56	5	174	5	IRF9	14	24631525	Missense_Mutation	DNP	TT	TCGA-DD-A73D-01A-12D-A32G-10		24631525	82718015	53	12899											
FRMD6	122786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52186983	52187007	+	Frame_Shift_Del	DEL	ACTCCAGCAGTGCCATCCACCGCAA	ACTCCAGCAGTGCCATCCACCGCAA	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	ACTCCAGCAGTGCCATCCACCGCAA	ACTCCAGCAGTGCCATCCACCGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FRMD6	NM_001267046	exon11	c.1235_1259del	p.412_420del	ACAGCTACTCCAG	.	57	11	68	0	.	524	-	52187007	ACTCCAGCAGTGCCATCCACCGCAA	-	52186983	7	5	104	1	0	1	0	1	0	0	0	0	6054	391	14	0	1249	0	FRMD6	14	52186983	Frame_Shift_Del	DEL	ACTCCAGCAGTGCCATCCACCGCAA	TCGA-DD-A73D-01A-12D-A32G-10	27555458	52186983	55162557	54	12900											
TEX9	374618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56683606	56683606	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TEX9	NM_198524	exon7	c.C561T	p.D187D	TAATGACATTGGA	.	144	69	138	0	.	90	T	56683606	C	T	56683606	2	4	104	1	0	0	0	0	0	0	0	1	15781	477	17	3		3	TEX9	15	56683606	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10		56683606	45847786	55	12901											
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75221554	75221554	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	COX5A	NM_004255	exon2	c.C120G	p.C40W	GGAATAGCAGCGA	.	82	37	70	0	.	90	C	75221554	G	C	75221554	3	2	104	1	0	0	0	0	1	0	0	0	3772	963	34	4	344	4	COX5A	15	75221554	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	18537948	75221554	27309838	56	12902											
GNPTG	84572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1412312	1412312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GNPTG	NM_032520	exon7	c.G517A	p.A173T	CCCCACGCCTTGC	.	31	12	36	0	.	90	A	1412312	G	A	1412312	3	1	104	1	0	0	0	0	1	0	0	0	6546	1087	38	1	543	1	GNPTG	16	1412312	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10		1412312	88942441	57	12903											
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30507788	30507788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ITGAL	NM_002209	exon15	c.T1733C	p.I578T	CAGGAATTCAGTG	.	104	49	105	0	.	994	C	30507788	T	C	30507788	3	2	104	1	0	0	0	0	1	0	0	0	7886	1493	52	2	1791	2	ITGAL	16	30507788	Missense_Mutation	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10	29095476	30507788	59846965	58	12904											
DNAH9	1770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11737970	11737970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DNAH9	NM_001372	exon49	c.G9262A	p.A3088T	CTGAAAGCAAAGC	.	22	11	27	1	.	168	A	11737970	G	A	11737970	3	1	104	1	0	0	0	0	1	0	0	0	4608	971	34	3	9456	3	DNAH9	17	11737970	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10		11737970	69457240	59	12905											
SLC38A10	124565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79226202	79226202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SLC38A10	NM_001037984	exon13	c.G1738A	p.V580I	CTGGAACTTTCTG	.	194	27	56	1	.	70	T	79226202	C	T	79226202	3	4	104	1	0	0	0	0	1	0	0	0	14602	565	20	3	1915	3	SLC38A10	17	79226202	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	67488232	79226202	1969008	60	12906											
CELF5	60680	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3273900	3273900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CELF5	NM_021938	exon3	c.G373A	p.D125N	CCTGCGGACAGTG	.	55	19	56	1	.	92	A	3273900	G	A	3273900	3	1	104	1	0	0	0	0	1	0	0	0	3219	1174	41	3	383	3	CELF5	19	3273900	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10		3273900	55855083	61	12907											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6697550	6697550	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	C3	NM_000064	exon21	c.C2601T	p.L867L	ATTGTGGAGTAGT	.	50	24	50	0	.	95	A	6697550	G	A	6697550	2	1	104	1	0	0	0	0	0	0	0	1	2204	1161	41	3		3	C3	19	6697550	Silent	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	3423650	6697550	52431433	62	12908											
ANGPTL6	83854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10204121	10204121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ANGPTL6	NM_031917	exon5	c.C1126T	p.R376W	CAAGCCGCAGGCG	.	95	39	66	0	.	90	A	10204121	G	A	10204121	3	1	104	1	0	0	0	0	1	0	0	0	618	1086	38	1	294	1	ANGPTL6	19	10204121	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	3506571	10204121	48924862	63	12909											
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13054718	13054718	+	Missense_Mutation	SNP	C	C	G	rs148604761	alternate_allele	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CALR	NM_004343	exon9	c.C1245G	p.D415E	CAAGGACGAGCTG	.	97	44	95	0	C|0.999;T|0.000	91	G	13054718	C	G	13054718	3	3	104	1	0	0	0	0	1	0	0	0	2592	535	19	4	1279	4	CALR	19	13054718	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	2850597	13054718	46074265	64	12910											
CD97	976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14516639	14516639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CD97	NM_078481	exon14	c.1709delT	p.L570fs	CTTTCCTGCTGGT	.	43	21	44	0	.	570	-	14516639	T	-	14516639	7	5	104	1	0	1	0	1	0	0	0	0	3049	1580	55	0	1763	0	CD97	19	14516639	Frame_Shift_Del	DEL	T	TCGA-DD-A73D-01A-12D-A32G-10	1461921	14516639	44612344	65	12911											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40408468	40408468	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FCGBP	NM_003890	exon8	c.G4371A	p.K1457K	CTCCTCCTTCTGA	.	213	67	242	0	.	98	T	40408468	C	T	40408468	2	4	104	1	0	0	0	0	0	0	0	1	5778	680	24	3		3	FCGBP	19	40408468	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	25891829	40408468	18720515	66	12912											
PRX	57716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40903727	40903727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRX	NM_181882	exon7	c.C532A	p.P178T	GGACAGGACCCTT	.	21	12	29	0	.	92	T	40903727	G	T	40903727	3	4	104	1	0	0	0	0	1	0	0	0	12642	1174	41	3	3857	3	PRX	19	40903727	Missense_Mutation	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	495259	40903727	18225256	67	12913											
CYP2F1	1572	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41622416	41622416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CYP2F1	NM_000774	exon3	c.G228A	p.V76V	GGTGGTGGTCCTC	.	45	17	49	1	.	90	A	41622416	G	A	41622416	2	1	104	1	0	0	0	0	0	0	0	1	4171	1335	47	3		3	CYP2F1	19	41622416	Silent	SNP	G	TCGA-DD-A73D-01A-12D-A32G-10	718689	41622416	17506567	68	12914											
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44739094	44739097	+	Frame_Shift_Del	DEL	TTTT	TTTT	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	TTTT	TTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ZNF227	NM_182490	exon6	c.511_514del	p.171_172del	TTTCCATTTTGGA	.	129	47	129	0	.	91	-	44739097	TTTT	-	44739094	7	5	104	1	0	1	0	1	0	0	0	0	17778	1493	52	0	525	0	ZNF227	19	44739094	Frame_Shift_Del	DEL	TTTT	TCGA-DD-A73D-01A-12D-A32G-10	3116678	44739094	14389889	69	12915											
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49002759	49002759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LMTK3	NM_001080434	exon12	c.G1654T	p.V552L	GCAGCACGCTGGG	.	49	23	51	0	.	1357	A	49002759	C	A	49002759	3	1	104	1	0	0	0	0	1	0	0	0	8860	536	19	1	2835	1	LMTK3	19	49002759	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	4263665	49002759	10126224	70	12916											
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51960896	51960896	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SIGLEC8	NM_014442	exon2	c.G552T	p.G184G	GGGTGTCCCCTGC	.	40	17	34	0	.	94	A	51960896	C	A	51960896	2	1	104	1	0	0	0	0	0	0	0	1	14314	842	30	3		3	SIGLEC8	19	51960896	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	2958137	51960896	7168087	71	12917											
BIRC8	112401	broad.mit.edu;bcgsc.ca	37	19	53793554	53793554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	BIRC8	NM_033341	exon1	c.G74A	p.R25K	CCAGCTCTTGCAA	.	80	33	98	2	.	227	T	53793554	C	T	53793554	3	4	104	1	0	0	0	0	1	0	0	0	1440	913	32	3	640	3	BIRC8	19	53793554	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	1832658	53793554	5335429	72	12918											
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44664102	44664102	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SLC12A5	NM_001134771	exon3	c.C276A	p.T92T	CTACACCAACCTG	.	76	30	91	0	.	156	A	44664102	C	A	44664102	2	1	104	1	0	0	0	0	0	0	0	1	14386	581	21	3		3	SLC12A5	20	44664102	Silent	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10		44664102	18361418	73	12919											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73812012	73812012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	RLIM	NM_183353	exon5	c.A1138T	p.S380C	TGGTACTGACATA	.	108	57	94	0	.	228	A	73812012	T	A	73812012	3	1	104	1	0	0	0	0	1	0	0	0	13390	1580	55	4	740	4	RLIM	23	73812012	Missense_Mutation	SNP	T	TCGA-DD-A73D-01A-12D-A32G-10		73812012	81458548	74	12920											
GLRA4	441509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102974160	102974160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GLRA4	NM_001024452	exon7	c.G758A	p.R253Q	ATCTGCCGTTCCA	.	226	96	190	1	.	108	T	102974160	C	T	102974160	3	4	104	1	0	0	0	0	1	0	0	0	6457	652	23	1	602	1	GLRA4	23	102974160	Missense_Mutation	SNP	C	TCGA-DD-A73D-01A-12D-A32G-10	29162148	102974160	52296400	75	12921											
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17248518	17248518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CROCC	NM_014675	exon1	c.G5A	p.S2N	CCATGAGCTTGGG	.	224	45	215	0	.	137	A	17248518	G	A	17248518	3	1	105	1	0	0	0	0	1	0	0	0	3893	971	34	3	7	3	CROCC	1	17248518	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10		17248518	232002103	1	12922											
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20466020	20466020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PLA2G2F	NM_022819	exon1	c.C100T	p.P34S	TCCTGTCCTTCAA	.	70	36	65	0	.	91	T	20466020	C	T	20466020	3	4	105	1	0	0	0	0	1	0	0	0	11999	855	30	3	102	3	PLA2G2F	1	20466020	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	3217502	20466020	228784601	2	12923											
C1QB	713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22987600	22987600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1QB	NM_000491	exon3	c.C483T	p.T161T	GTTCACCTGCAAG	.	157	72	121	1	.	153	T	22987600	C	T	22987600	2	4	105	1	0	0	0	0	0	0	0	1	1955	668	24	3		3	C1QB	1	22987600	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	2521580	22987600	226263021	3	12924											
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40770037	40770037	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	COL9A2	NM_001852	exon24	c.1242delC	p.P414fs	AATTCCGGGGGGG	.	78	36	58	0	.	92	-	40770037	G	-	40770037	7	5	105	1	0	1	0	1	0	0	0	0	3708	1103	39	0	863	0	COL9A2	1	40770037	Frame_Shift_Del	DEL	G	TCGA-DD-A73E-01A-12D-A32G-10	17782437	40770037	208480584	4	12925											
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60520924	60520924	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1orf87	NM_152377	exon3	c.C294T	p.N98N	TTTCTGGTTGTTT	.	233	104	228	0	.	154	A	60520924	G	A	60520924	2	1	105	1	0	0	0	0	0	0	0	1	2064	1252	44	3		3	C1orf87	1	60520924	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	19750887	60520924	188729697	5	12926											
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85561679	85561679	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR63	NM_145172	exon11	c.T1239A	p.I413I	TATCATTGCTGGA	.	152	53	136	0	.	95	A	85561679	T	A	85561679	2	1	105	1	0	0	0	0	0	0	0	1	17311	1800	63	4		4	WDR63	1	85561679	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	25040755	85561679	163688942	6	12927											
CLCA4	22802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87040355	87040355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CLCA4	NM_012128	exon10	c.G1600A	p.D534N	CTCTGGGATCCCA	.	239	96	198	2	.	92	A	87040355	G	A	87040355	3	1	105	1	0	0	0	0	1	0	0	0	3459	1174	41	3	1638	3	CLCA4	1	87040355	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	1478676	87040355	162210266	7	12928											
NBPF14	25832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	148004618	148004618	+	Missense_Mutation	SNP	T	T	C	rs143743039		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NBPF14	NM_015383	exon22	c.A2696G	p.N899S	AACCTATTGTCCA	.	453	265	410	0	T|1.000;C|0.000	91	C	148004618	T	C	148004618	3	2	105	1	0	0	0	0	1	0	0	0	10194	1493	52	2	73	2	NBPF14	1	148004618	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	60964263	148004618	101246003	8	12929											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155172876	155172876	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THBS3	NM_007112	exon8	c.808+1G>T	.	CACTCACCGCACA	.	143	58	103	0	.	222	A	155172876	C	A	155172876	5	1	105	1	0	0	0	0	0	0	1	0	15852	521	18	3	2129	3	THBS3	1	155172876	Splice_Site	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	7168258	155172876	94077745	9	12930											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155448114	155448114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ASH1L	NM_018489	exon3	c.G4547C	p.R1516P	CTATAGCGCTTCA	.	137	50	115	0	.	234	G	155448114	C	G	155448114	3	3	105	1	0	0	0	0	1	0	0	0	1041	768	27	4	4451	4	ASH1L	1	155448114	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	275238	155448114	93802507	10	12931											
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171251220	171251220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FMO1	NM_002021	exon7	c.G931T	p.V311F	AACTCTGTCATAT	.	86	11	69	0	.	515	T	171251220	G	T	171251220	3	4	105	1	0	0	0	0	1	0	0	0	5954	1377	48	3	953	3	FMO1	1	171251220	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	15803106	171251220	77999401	11	12932											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179604969	179604969	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TDRD5	NM_173533	exon9	c.G1467C	p.R489R	CATCCGGATCTAT	.	89	36	97	0	.	94	C	179604969	G	C	179604969	2	2	105	1	0	0	0	0	0	0	0	1	15730	1161	41	4		4	TDRD5	1	179604969	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	8353749	179604969	69645652	12	12933											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181693632	181693632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CACNA1E	NM_001205293	exon17	c.A2101G	p.I701V	TTGGCTATCGCTG	.	113	50	78	0	.	95	G	181693632	A	G	181693632	3	3	105	1	0	0	0	0	1	0	0	0	2542	449	16	2	2167	2	CACNA1E	1	181693632	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	2088663	181693632	67556989	13	12934											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197407733	197407733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CRB1	NM_201253	exon10	c.A3806G	p.Y1269C	CTTGCTACAATGG	.	114	42	88	0	.	161	G	197407733	A	G	197407733	3	3	105	1	0	0	0	0	1	0	0	0	3848	391	14	2	3844	2	CRB1	1	197407733	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	15714101	197407733	51842888	14	12935											
C1orf106	55765	broad.mit.edu;bcgsc.ca	37	1	200870192	200870194	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	AGG	AGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1orf106	NM_018265	exon5	c.722_724del	p.241_242del	TGCTGCAGGAGGA	.	20	7	23	0	.	93	-	200870194	AGG	-	200870192	7	5	105	1	0	1	0	1	0	0	0	0	1980	188	7	0	698	0	C1orf106	1	200870192	In_Frame_Del	DEL	AGG	TCGA-DD-A73E-01A-12D-A32G-10	3462459	200870192	48380429	15	12936											
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213415976	213415976	+	Silent	SNP	C	C	T	rs147823242	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RPS6KC1	NM_012424	exon12	c.C2886T	p.A962A	CGATGCCATAGAG	.	242	66	134	0	C|0.999;T|0.001	417	T	213415976	C	T	213415976	2	4	105	1	0	0	0	0	0	0	0	1	13658	581	21	3		3	RPS6KC1	1	213415976	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	12545784	213415976	35834645	16	12937											
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220276901	220276901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IARS2	NM_018060	exon8	c.T1063A	p.S355T	ACACTTTCAGGTG	.	82	20	58	0	.	94	A	220276901	T	A	220276901	3	1	105	1	0	0	0	0	1	0	0	0	7474	1783	62	4	1093	4	IARS2	1	220276901	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	6860925	220276901	28973720	17	12938											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228467595	228467595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OBSCN	NM_001271223	exon33	c.C8757T	p.C2919C	GTCCTGCGACTTC	.	155	51	80	0	.	403	T	228467595	C	T	228467595	2	4	105	1	0	0	0	0	0	0	0	1	10812	776	27	1		1	OBSCN	1	228467595	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	8190694	228467595	20783026	18	12939											
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230846423	230846423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AGT	NM_000029	exon2	c.T174C	p.N58N	CCCGGCATTGGCC	.	161	43	93	0	.	226	G	230846423	A	G	230846423	2	3	105	1	0	0	0	0	0	0	0	1	399	214	8	2		2	AGT	1	230846423	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	2378828	230846423	18404198	19	12940											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247024551	247024551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AHCTF1	NM_015446	exon29	c.G3809T	p.C1270F	ACTGCACATTTTT	.	426	120	246	0	.	97	A	247024551	C	A	247024551	3	1	105	1	0	0	0	0	1	0	0	0	408	478	17	3	3050	3	AHCTF1	1	247024551	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	16178128	247024551	2226070	20	12941											
OR2G2	81470	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247752217	247752217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR2G2	NM_001001915	exon1	c.G556A	p.V186M	GTCCCTGTGCTCA	.	281	89	162	1	.	68	A	247752217	G	A	247752217	3	1	105	1	0	0	0	0	1	0	0	0	10998	1377	48	3	558	3	OR2G2	1	247752217	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	727666	247752217	1498404	21	12942											
OR2T1	26696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569357	248569357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR2T1	NM_030904	exon1	c.C62A	p.T21K	GCCTAACAATTAA	.	216	74	125	1	.	69	A	248569357	C	A	248569357	3	1	105	1	0	0	0	0	1	0	0	0	11016	478	17	3	64	3	OR2T1	1	248569357	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	817140	248569357	681264	22	12943											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1488375	1488375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TPO	NM_175719	exon9	c.C1346T	p.T449I	TCATCACCCTGAG	.	239	83	149	0	.	332	T	1488375	C	T	1488375	3	4	105	1	0	0	0	0	1	0	0	0	16407	507	18	3	1376	3	TPO	2	1488375	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		1488375	241710998	23	12944											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1915791	1915791	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYT1L	NM_015025	exon13	c.1703+1G>T	.	GGCTTACCTTCGG	.	95	26	40	0	.	95	A	1915791	C	A	1915791	5	1	105	1	0	0	0	0	0	0	1	0	10107	521	18	3	1906	3	MYT1L	2	1915791	Splice_Site	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	427416	1915791	241283582	24	12945											
DOK1	1796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74783058	74783058	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DOK1	NM_001381	exon4	c.C492T	p.A164A	TGAGGCCGCCGAG	.	112	36	60	0	.	226	T	74783058	C	T	74783058	2	4	105	1	0	0	0	0	0	0	0	1	4696	639	23	1		1	DOK1	2	74783058	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	72867267	74783058	168416315	25	12946											
LYG2	254773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99861785	99861785	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LYG2	NM_175735	exon4	c.T321C	p.H107H	TCCGCCATGGCTT	.	71	38	52	0	.	91	G	99861785	A	G	99861785	2	3	105	1	0	0	0	0	0	0	0	1	9105	214	8	2		2	LYG2	2	99861785	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	25078727	99861785	143337588	26	12947											
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135976732	135976732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZRANB3	NM_032143	exon16	c.G2267A	p.S756N	TTACAGCTCATCT	.	287	86	215	0	.	658	T	135976732	C	T	135976732	3	4	105	1	0	0	0	0	1	0	0	0	18221	797	28	3	996	3	ZRANB3	2	135976732	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	36114947	135976732	107222641	27	12948											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138414638	138414638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THSD7B	.	.	.	.	CAGGAGGCAAATG	.	124	44	106	0	.	75	A	138414638	G	A	138414638	3	1	105	1	0	0	0	0	1	0	0	0	15877	1203	42	3	4285	3	THSD7B	2	138414638	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	2437906	138414638	104784735	28	12949											
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141707938	141707938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRP1B	NM_018557	exon20	c.G3002T	p.G1001V	ACACAGCCCACCT	.	172	60	111	0	.	311	A	141707938	C	A	141707938	3	1	105	1	0	0	0	0	1	0	0	0	8955	739	26	3	11085	3	LRP1B	2	141707938	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	3293300	141707938	101491435	29	12950											
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152729009	152729009	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CACNB4	NM_000726	exon7	c.522-2A>G	.	ATTTCCTAGGATA	.	91	41	71	0	.	24	C	152729009	T	C	152729009	5	2	105	1	0	0	0	0	0	0	1	0	2555	1536	53	2	1078	2	CACNB4	2	152729009	Splice_Site	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	11021071	152729009	90470364	30	12951											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166245504	166245504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN2A	NM_001040143	exon26	c.G5188T	p.D1730Y	CCTCCAGACTGTG	.	318	56	225	0	.	142	T	166245504	G	T	166245504	3	4	105	1	0	0	0	0	1	0	0	0	13916	942	33	3	5386	3	SCN2A	2	166245504	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	13516495	166245504	76953869	31	12952											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166898866	166898866	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN1A	NM_001165963	exon12	c.A2112G	p.L704L	ATCTTCTAGAAAG	.	150	63	108	0	.	147	C	166898866	T	C	166898866	2	2	105	1	0	0	0	0	0	0	0	1	13914	1509	53	2		2	SCN1A	2	166898866	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	653362	166898866	76300507	32	12953											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179590676	179590676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TTN	NM_001267550	exon70	c.G20373C	p.E6791D	TACCACCTCAAAC	.	234	128	169	0	.	636	G	179590676	C	G	179590676	3	3	105	1	0	0	0	0	1	0	0	0	16732	680	24	4	84328	4	TTN	2	179590676	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	12691810	179590676	63608697	33	12954											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218700829	218700829	+	Missense_Mutation	SNP	G	G	T	rs141836163	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TNS1	NM_022648	exon18	c.C2738A	p.P913H	CTACGAGGGGATG	.	128	69	88	0	G|0.999;A|0.001	156	T	218700829	G	T	218700829	3	4	105	1	0	0	0	0	1	0	0	0	16340	1000	35	3	2533	3	TNS1	2	218700829	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	39110153	218700829	24498544	34	12955											
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29977613	29977613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RBMS3	NM_001177712	exon12	c.T1015C	p.S339P	CCCATGTCAATGC	.	298	161	198	0	.	90	C	29977613	T	C	29977613	3	2	105	1	0	0	0	0	1	0	0	0	13150	1667	58	2	1061	2	RBMS3	3	29977613	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10		29977613	168044817	35	12956	74	2									
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29977619	29977619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RBMS3	NM_001177712	exon12	c.C1021A	p.Q341K	TCAATGCAGCCAG	.	293	160	204	0	.	90	A	29977619	C	A	29977619	3	1	105	1	0	0	0	0	1	0	0	0	13150	711	25	3	1067	3	RBMS3	3	29977619	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	6	29977619	168044811	36	12957	74	2									
OXSR1	9943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38292941	38292941	+	Missense_Mutation	SNP	G	G	T	rs145431865	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OXSR1	NM_005109	exon16	c.G1423T	p.D475Y	CTGGTCGACGGAA	.	163	84	144	0	G|0.999;A|0.001	311	T	38292941	G	T	38292941	3	4	105	1	0	0	0	0	1	0	0	0	11336	1058	37	1	1485	1	OXSR1	3	38292941	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	8315322	38292941	159729489	37	12958											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38921513	38921513	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN11A	NM_014139	exon19	c.A3321G	p.L1107L	CCATTTTAGTACC	.	107	38	93	0	.	99	C	38921513	T	C	38921513	2	2	105	1	0	0	0	0	0	0	0	1	13913	1741	61	2		2	SCN11A	3	38921513	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	628572	38921513	159100917	38	12959											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	222	84	175	1	.	24361	T	41266098	A	T	41266098	3	4	105	1	0	0	0	0	1	0	0	0	4016	275	10	4	101	4	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	2344585	41266098	156756332	39	12960											
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49152692	49152692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	USP19	NM_001199161	exon13	c.C1991T	p.T664I	TGGTGGGTGCCCT	.	64	22	55	1	.	663	A	49152692	G	A	49152692	3	1	105	1	0	0	0	0	1	0	0	0	17047	1261	44	3	2334	3	USP19	3	49152692	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	7886594	49152692	148869738	40	12961											
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52860642	52860642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ITIH4	NM_001166449	exon5	c.A545G	p.Q182R	ATGCCCTGGGGCT	.	53	32	48	0	.	46	C	52860642	T	C	52860642	3	2	105	1	0	0	0	0	1	0	0	0	7906	1580	55	2	2327	2	ITIH4	3	52860642	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	3707950	52860642	145161788	41	12962											
ADPRH	141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119306620	119306620	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ADPRH	NM_001125	exon5	c.G969A	p.V323V	AGGAGTGAGTCCC	.	115	59	83	1	.	91	A	119306620	G	A	119306620	2	1	105	1	0	0	0	0	0	0	0	1	331	1277	45	3		3	ADPRH	3	119306620	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	66445978	119306620	78715810	42	12963											
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	160156300	160156300	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRIM59	NM_173084	exon3	c.A672T	p.R224S	CTTCATTCTTTCA	.	209	64	119	0	.	658	A	160156300	T	A	160156300	3	1	105	1	0	0	0	0	1	0	0	0	16529	1780	62	4	543	4	TRIM59	3	160156300	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	40849680	160156300	37866130	43	12964											
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26491839	26491839	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCKAR	NM_000730	exon1	c.C51T	p.P17P	TTCACAGGGAGGA	.	99	41	101	0	.	523	A	26491839	G	A	26491839	2	1	105	1	0	0	0	0	0	0	0	1	2880	987	35	3		3	CCKAR	4	26491839	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10		26491839	164662437	44	12965											
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47427952	47427952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GABRB1	NM_000812	exon9	c.T1342C	p.S448P	GTGAATTCCATAG	.	140	60	175	0	.	92	C	47427952	T	C	47427952	3	2	105	1	0	0	0	0	1	0	0	0	6166	1783	62	2	1376	2	GABRB1	4	47427952	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	20936113	47427952	143726324	45	12966											
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120182988	120182988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	USP53	NM_019050	exon11	c.G941T	p.W314L	CCAAATGGGTATT	.	112	56	91	0	.	660	T	120182988	G	T	120182988	3	4	105	1	0	0	0	0	1	0	0	0	17081	1357	47	3	971	3	USP53	4	120182988	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	72755036	120182988	70971288	46	12967											
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146648100	146648100	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001080531	exon3	c.A345G	p.S115S	AAAGTCATTTGAT	.	510	139	260	0	.	.	G	146648100	A	G	146648100	2	3	105	1	0	0	0	0	0	0	0	1	2277	204	8	2		2	C4orf51	4	146648100	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	26465112	146648100	44506176	47	12968											
GLRB	2743	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158043481	158043481	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GLRB	NM_001166061	exon4	c.230-1G>C	.	TTCATAGGCATTC	.	602	142	362	1	.	92	C	158043481	G	C	158043481	5	2	105	1	0	0	0	0	0	0	1	0	6458	1014	35	4	239	4	GLRB	4	158043481	Splice_Site	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	11395381	158043481	33110795	48	12969											
FSTL5	56884	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	162307497	162307497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FSTL5	NM_020116	exon16	c.C1946T	p.P649L	GACTGAGGAACGC	.	180	40	99	1	.	158	A	162307497	G	A	162307497	3	1	105	1	0	0	0	0	1	0	0	0	6080	1000	35	3	601	3	FSTL5	4	162307497	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	4264016	162307497	28846779	49	12970											
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1878852	1878852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IRX4	NM_016358	exon5	c.A791G	p.D264G	AGCGGGTCGAAGT	.	193	80	170	0	.	226	C	1878852	T	C	1878852	3	2	105	1	0	0	0	0	1	0	0	0	7846	1667	58	2	772	2	IRX4	5	1878852	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10		1878852	179036408	50	12971											
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31323299	31323299	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDH6	NM_004932	exon12	c.C2257T	p.L753L	AGCTCGCTGGAGT	.	165	73	146	0	.	159	T	31323299	C	T	31323299	2	4	105	1	0	0	0	0	0	0	0	1	3114	796	28	3		3	CDH6	5	31323299	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	29444447	31323299	149591961	51	12972											
TARS	6897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	33448802	33448802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TARS	NM_152295	exon3	c.G294A	p.W98X	ATCTTGGAAAACT	.	136	62	112	0	.	92	A	33448802	G	A	33448802	4	1	105	1	0	0	0	0	0	1	0	0	15556	1183	41	3	304	3	TARS	5	33448802	Nonsense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	2125503	33448802	147466458	52	12973											
HOMER1	9456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78734957	78734957	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HOMER1	NM_004272	exon5	c.T403T	p.W135W	GAAGATCCCCGCC	.	116	57	94	0	.	90	A	78734957	C	A	78734957	2	1	105	1	0	0	0	0	0	0	0	1	7278	855	30	3		3	HOMER1	5	78734957	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	45286155	78734957	102180303	53	12974											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127626533	127626533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FBN2	NM_001999	exon50	c.G6336T	p.K2112N	AGAACACTTTCCA	.	152	59	145	0	.	146	A	127626533	C	A	127626533	3	1	105	1	0	0	0	0	1	0	0	0	5703	564	20	3	2466	3	FBN2	5	127626533	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	48891576	127626533	53288727	54	12975											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140208380	140208380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHA6	NM_018909	exon1	c.T704C	p.V235A	TGGATGTGAATGA	.	170	84	148	0	.	92	C	140208380	T	C	140208380	3	2	105	1	0	0	0	0	1	0	0	0	11528	1696	59	2	706	2	PCDHA6	5	140208380	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	12581847	140208380	40706880	55	12976											
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140347864	140347864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHAC2	NM_031883	exon1	c.A1513G	p.T505A	GAGGTGACCTACT	.	156	66	126	0	.	26	G	140347864	A	G	140347864	3	3	105	1	0	0	0	0	1	0	0	0	11533	275	10	2	1515	2	PCDHAC2	5	140347864	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	139484	140347864	40567396	56	12977											
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu	37	5	140481966	140481966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHB3	NM_018937	exon1	c.1733delG	p.R578fs	TGCCCCGGGCGGC	.	47	11	28	0	.	92	-	140481966	G	-	140481966	7	5	105	1	0	1	0	1	0	0	0	0	11543	1116	39	0	1735	0	PCDHB3	5	140481966	Frame_Shift_Del	DEL	G	TCGA-DD-A73E-01A-12D-A32G-10	134102	140481966	40433294	57	12978											
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773532	140773532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_014004	exon1	c.T1152C	p.C384C	TGTCTGTTACACA	.	125	55	117	0	.	.	C	140773532	T	C	140773532	2	2	105	1	0	0	0	0	0	0	0	1	11560	1731	60	2		2	PCDHGA8	5	140773532	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	291566	140773532	40141728	58	12979											
HDAC3	8841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141008783	141008783	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HDAC3	NM_003883	exon7	c.G567A	p.T189T	GGACACCGTCATG	.	115	52	109	0	.	227	T	141008783	C	T	141008783	2	4	105	1	0	0	0	0	0	0	0	1	7008	639	23	1		1	HDAC3	5	141008783	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	235251	141008783	39906477	59	12980											
NR3C1	2908	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142680054	142680054	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NR3C1	NM_001024094	exon5	c.A1746T	p.I582I	ACCTGGTATTGCC	.	130	66	97	1	.	92	A	142680054	T	A	142680054	2	1	105	1	0	0	0	0	0	0	0	1	10630	1628	57	4		4	NR3C1	5	142680054	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	1671271	142680054	38235206	60	12981											
FAT2	2196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	150946610	150946610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FAT2	NM_001447	exon1	c.T1883C	p.L628P	GCAGTAAGATTGA	.	109	21	78	0	.	96	G	150946610	A	G	150946610	3	3	105	1	0	0	0	0	1	0	0	0	5690	72	3	2	11258	2	FAT2	5	150946610	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	8266556	150946610	29968650	61	12982											
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170598268	170598268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RANBP17	NM_022897	exon16	c.T1843G	p.F615V	CTTCAGTTCCTAA	.	163	71	153	0	.	524	G	170598268	T	G	170598268	3	3	105	1	0	0	0	0	1	0	0	0	13027	1725	60	5	1905	5	RANBP17	5	170598268	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	19651658	170598268	10316992	62	12983											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	173316743	173316743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CPEB4	NM_030627	exon1	c.G7T	p.D3Y	ATGGGGGATTACG	.	228	91	220	0	.	90	T	173316743	G	T	173316743	3	4	105	1	0	0	0	0	1	0	0	0	3803	1174	41	3	9	3	CPEB4	5	173316743	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	2718475	173316743	7598517	63	12984											
MAK	4117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10784806	10784806	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MAK	NM_005906	exon12	c.1317-1G>T	.	GGAAGCCTTGAAA	.	191	67	80	0	.	335	A	10784806	C	A	10784806	5	1	105	1	0	0	0	0	0	0	1	0	9197	695	24	3	571	3	MAK	6	10784806	Splice_Site	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		10784806	160330261	64	12985											
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32122457	32122457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PPT2	NM_138717	exon2	c.C104T	p.P35L	CAGCCCCCGCGCC	.	127	39	63	0	.	44	T	32122457	C	T	32122457	3	4	105	1	0	0	0	0	1	0	0	0	12412	623	22	3	110	3	PPT2	6	32122457	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	21337651	32122457	138992610	65	12986											
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36442832	36442832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCTD20	NM_173562	exon3	c.C427G	p.L143V	ACCATGCTGGGAA	.	231	74	112	0	.	92	G	36442832	C	G	36442832	3	3	105	1	0	0	0	0	1	0	0	0	8108	796	28	4	433	4	KCTD20	6	36442832	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	4320375	36442832	134672235	66	12987											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46660441	46660441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TDRD6	NM_001168359	exon1	c.A4576G	p.T1526A	TATGCCACTGTGA	.	284	88	126	0	.	138	G	46660441	A	G	46660441	3	3	105	1	0	0	0	0	1	0	0	0	15731	159	6	2	4578	2	TDRD6	6	46660441	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	10217609	46660441	124454626	67	12988											
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	82912269	82912269	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IBTK	NM_015525	exon18	c.2705delA	p.N902fs	GCCATATTCAATC	.	127	107	205	0	.	92	-	82912269	T	-	82912269	7	5	105	1	0	1	0	1	0	0	0	0	7476	1493	52	0	1404	0	IBTK	6	82912269	Frame_Shift_Del	DEL	T	TCGA-DD-A73E-01A-12D-A32G-10	36251828	82912269	88202798	68	12989											
PKIB	5570	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	123039083	123039083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PKIB	NM_001270394	exon7	c.A165G	p.K55K	CCTCAAACTGGAG	.	11	8	16	0	.	90	G	123039083	A	G	123039083	2	3	105	1	0	0	0	0	0	0	0	1	11974	40	2	2		2	PKIB	6	123039083	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	40126814	123039083	48075984	69	12990											
SMOC2	64094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168927046	168927046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SMOC2	NM_022138	exon3	c.G277A	p.E93K	GTGGCCGAAAGGA	.	71	55	108	0	.	91	A	168927046	G	A	168927046	3	1	105	1	0	0	0	0	1	0	0	0	14802	1059	37	1	287	1	SMOC2	6	168927046	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	45887963	168927046	2188021	70	12991											
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128486943	128486943	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FLNC	NM_001127487	exon24	c.G4272C	p.G1424G	CTTCGGGGGGCGG	.	121	87	64	0	.	141	C	128486943	G	C	128486943	2	2	105	1	0	0	0	0	0	0	0	1	5935	1219	43	4		4	FLNC	7	128486943	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10		128486943	30651720	71	12992											
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	146536896	146536896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CNTNAP2	NM_014141	exon3	c.A302T	p.Q101L	CAACCCAAGGAAG	.	176	106	123	0	.	100	T	146536896	A	T	146536896	3	4	105	1	0	0	0	0	1	0	0	0	3647	130	5	4	312	4	CNTNAP2	7	146536896	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	18049953	146536896	12601767	72	12993											
PENK	5179	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	57353832	57353832	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PENK	NM_001135690	exon4	c.A803G	p.X268X	AGATATTAAAATC	.	46	40	78	0	.	517	C	57353832	T	C	57353832	2	2	105	1	0	0	0	0	0	0	0	1	11727	1761	61	2		2	PENK	8	57353832	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10		57353832	89010190	73	12994											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113585851	113585851	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSMD3	NM_198123	exon24	c.A3921T	p.L1307L	AGCACCTAGTAGA	.	82	18	88	0	.	1132	A	113585851	T	A	113585851	2	1	105	1	0	0	0	0	0	0	0	1	3946	1509	53	4		4	CSMD3	8	113585851	Silent	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	56232019	113585851	32778171	74	12995											
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19786089	19786089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC24A2	NM_001193288	exon1	c.A776G	p.N259S	ATGACATTATCCA	.	137	32	102	0	.	517	C	19786089	T	C	19786089	3	2	105	1	0	0	0	0	1	0	0	0	14466	1493	52	2	1249	2	SLC24A2	9	19786089	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10		19786089	121427342	75	12996											
IFNA4	3441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21187461	21187461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IFNA4	NM_021068	exon1	c.T70C	p.C24R	GATCACAGCCCAG	.	370	160	304	0	.	92	G	21187461	A	G	21187461	3	3	105	1	0	0	0	0	1	0	0	0	7539	188	7	2	503	2	IFNA4	9	21187461	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	1401372	21187461	120025970	76	12997											
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	122011265	122011265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DBC1	NM_014618	exon3	c.C382G	p.H128D	GCAGGTGGGTGCC	.	70	16	68	0	.	582	C	122011265	G	C	122011265	3	2	105	1	0	0	0	0	1	0	0	0	4247	1348	47	4	1927	4	DBC1	9	122011265	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	100823804	122011265	19202166	77	12998											
FCN1	2219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137801655	137801655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FCN1	NM_002003	exon9	c.C970T	p.R324W	CGGGCCGCACCTT	.	68	27	47	0	.	154	A	137801655	G	A	137801655	3	1	105	1	0	0	0	0	1	0	0	0	5791	1086	38	1	14	1	FCN1	9	137801655	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	15790390	137801655	3411776	78	12999											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16975121	16975121	+	Missense_Mutation	SNP	C	C	T	rs143400113	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CUBN	NM_001081	exon40	c.G6089A	p.R2030Q	CACGTTCGGTGAG	.	123	54	91	0	C|0.999;T|0.001	166	T	16975121	C	T	16975121	3	4	105	1	0	0	0	0	1	0	0	0	4051	884	31	1	4894	1	CUBN	10	16975121	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		16975121	118559626	79	13000											
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22676816	22676816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SPAG6	NM_172242	exon6	c.T743C	p.V248A	TGGTTGTTGAAGC	.	103	45	90	0	.	153	C	22676816	T	C	22676816	3	2	105	1	0	0	0	0	1	0	0	0	14982	1725	60	2	765	2	SPAG6	10	22676816	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	5701695	22676816	112857931	80	13001											
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43694401	43694401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RASGEF1A	NM_145313	exon9	c.G1012T	p.A338S	ACTTGGCTGTCTT	.	69	25	58	0	.	227	A	43694401	C	A	43694401	3	1	105	1	0	0	0	0	1	0	0	0	13069	797	28	3	453	3	RASGEF1A	10	43694401	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	21017585	43694401	91840346	81	13002											
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70243246	70243246	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC25A16	NM_152707	exon9	c.T942A	p.S314S	TGCTTGAGAGGGA	.	42	9	45	0	.	90	T	70243246	A	T	70243246	2	4	105	1	0	0	0	0	0	0	0	1	14478	291	11	4		4	SLC25A16	10	70243246	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	26548845	70243246	65291501	82	13003											
TYSND1	219743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71899886	71899886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TYSND1	NM_173555	exon4	c.A1495T	p.S499C	TGTTGCTGGTGAT	.	168	76	141	0	.	135	A	71899886	T	A	71899886	3	1	105	1	0	0	0	0	1	0	0	0	16814	1580	55	4	209	4	TYSND1	10	71899886	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	1656640	71899886	63634861	83	13004											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73453964	73453964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDH23	NM_001171931	exon20	c.T2237G	p.V746G	TCATCGTTCGCGC	.	59	25	56	0	.	563	G	73453964	T	G	73453964	3	3	105	1	0	0	0	0	1	0	0	0	3108	1725	60	5	2542	5	CDH23	10	73453964	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	1554078	73453964	62080783	84	13005											
MUC5B	727897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1267649	1267649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_002458	exon31	c.C9539T	p.T3180M	GATCCACGGCCAC	.	239	42	207	1	.	.	T	1267649	C	T	1267649	3	4	105	1	0	0	0	0	1	0	0	0	9979	536	19	1	9670	1	MUC5B	11	1267649	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		1267649	133738867	85	13006											
OR52N1	79473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5809718	5809718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR52N1	NM_001001913	exon1	c.C329T	p.T110I	ATCCCTGTGAAGG	.	68	37	45	0	.	69	A	5809718	G	A	5809718	3	1	105	1	0	0	0	0	1	0	0	0	11127	1377	48	3	636	3	OR52N1	11	5809718	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	4542069	5809718	129196798	86	13007											
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30032269	30032269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCNA4	NM_002233	exon2	c.G1957T	p.V653L	TTCACACATCAGT	.	120	50	94	0	.	517	A	30032269	C	A	30032269	3	1	105	1	0	0	0	0	1	0	0	0	8005	478	17	3	8	3	KCNA4	11	30032269	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	24222551	30032269	104974247	87	13008											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46912023	46912023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRP4	NM_002334	exon14	c.G1720A	p.G574S	TGTTGCCCCAGTC	.	62	33	67	0	.	94	T	46912023	C	T	46912023	3	4	105	1	0	0	0	0	1	0	0	0	8959	623	22	3	4097	3	LRP4	11	46912023	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	16879754	46912023	88094493	88	13009											
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57995924	57995924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	OR10Q1,NS,carcinoma,+2	OR10Q1	NM_001004471	exon1	c.C424T	p.R142C	GCTCGCGGGTCAT	.	46	23	61	0	.	70	A	57995924	G	A	57995924	3	1	105	1	0	0	0	0	1	0	0	0	10916	1116	39	1	539	1	OR10Q1	11	57995924	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	11083901	57995924	77010592	89	13010											
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64603631	64603631	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDC42BPG	NM_017525	exon13	c.C1626T	p.A542A	GCTCAGGGCCCGG	.	51	18	48	0	.	528	A	64603631	G	A	64603631	2	1	105	1	0	0	0	0	0	0	0	1	3074	1219	43	3		3	CDC42BPG	11	64603631	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	6607707	64603631	70402885	90	13011											
DHCR7	1717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71146469	71146469	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DHCR7	NM_001163817	exon9	c.G1380A	p.E460E	GTAGCGCTCCCAG	.	77	19	37	0	.	228	T	71146469	C	T	71146469	2	4	105	1	0	0	0	0	0	0	0	1	4477	796	28	3		3	DHCR7	11	71146469	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	6542838	71146469	63860047	91	13012											
NADSYN1	55191	broad.mit.edu;bcgsc.ca	37	11	71202924	71202924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NADSYN1	NM_018161	exon18	c.A1739C	p.D580A	TGGCTGATGGACA	.	95	23	69	1	.	92	C	71202924	A	C	71202924	3	2	105	1	0	0	0	0	1	0	0	0	10138	333	12	5	1809	5	NADSYN1	11	71202924	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	56455	71202924	63803592	92	13013											
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99690405	99690405	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CNTN5	NM_001243270	exon3	c.G186T	p.L62L	AACACTGAGTGCT	.	213	42	196	0	.	366	T	99690405	G	T	99690405	2	4	105	1	0	0	0	0	0	0	0	1	3644	1277	45	3		3	CNTN5	11	99690405	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	28487481	99690405	35316111	93	13014											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103175403	103175403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DYNC2H1	NM_001080463	exon78	c.T11357G	p.L3786W	TCTGTTTGAAGAA	.	90	37	88	0	.	68	G	103175403	T	G	103175403	3	3	105	1	0	0	0	0	1	0	0	0	4846	1821	63	5	11667	5	DYNC2H1	11	103175403	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	3484998	103175403	31831113	94	13015											
CWF19L2	143884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107299752	107299752	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CWF19L2	NM_152434	exon8	c.T1206C	p.C402C	ACCACTACACAAA	.	203	104	178	1	.	68	G	107299752	A	G	107299752	2	3	105	1	0	0	0	0	0	0	0	1	4072	389	14	2		2	CWF19L2	11	107299752	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	4124349	107299752	27706764	95	13016											
PHB2	11331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7076910	7076910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PHB2	.	.	.	.	TTTCTACCAAGAA	.	56	24	43	0	.	48	G	7076910	C	G	7076910	3	3	105	1	0	0	0	0	1	0	0	0	11815	507	18	4	275	4	PHB2	12	7076910	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		7076910	126774985	96	13017											
CCT2	10576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69986800	69986800	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCT2	NM_006431	exon9	c.A795G	p.A265A	GGTTGCAGAAATA	.	81	26	55	0	.	651	G	69986800	A	G	69986800	2	3	105	1	0	0	0	0	0	0	0	1	2953	175	7	2		2	CCT2	12	69986800	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	62909890	69986800	63865095	97	13018											
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113553809	113553809	+	Missense_Mutation	SNP	C	C	T	rs150792397		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RASAL1	NM_004658	exon10	c.G779A	p.R260H	AGGACGCGGTCCT	.	131	61	107	0	C|1.000;T|0.000	229	T	113553809	C	T	113553809	3	4	105	1	0	0	0	0	1	0	0	0	13063	768	27	1	1687	1	RASAL1	12	113553809	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	43567009	113553809	20298086	98	13019											
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	123461262	123461262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OGFOD2	NM_024623	exon4	c.T71G	p.L24R	AAGCCCTCATCGC	.	90	44	60	0	.	69	G	123461262	T	G	123461262	3	3	105	1	0	0	0	0	1	0	0	0	10842	1551	54	5	77	5	OGFOD2	12	123461262	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	9907453	123461262	10390633	99	13020											
RNF219	79596	broad.mit.edu;bcgsc.ca	37	13	79190249	79190249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RNF219	NM_024546	exon6	c.C1647A	p.D549E	GCTGTTGTCTGAC	.	110	6	98	0	.	135	T	79190249	G	T	79190249	3	4	105	1	0	0	0	0	1	0	0	0	13482	1368	48	3	537	3	RNF219	13	79190249	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10		79190249	35979629	100	13021											
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113793724	113793724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	F10	NM_000504	exon4	c.G310T	p.G104C	AAAGACGGCCTCG	.	100	31	66	0	.	227	T	113793724	G	T	113793724	3	4	105	1	0	0	0	0	1	0	0	0	5336	1116	39	1	324	1	F10	13	113793724	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	34603475	113793724	1376154	101	13022											
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61275080	61275080	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MNAT1	NM_001177963	exon4	c.C354T	p.T118T	CAACACCAAAAAG	.	475	231	442	1	.	523	T	61275080	C	T	61275080	2	4	105	1	0	0	0	0	0	0	0	1	9674	581	21	3		3	MNAT1	14	61275080	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		61275080	46074460	102	13023											
LTK	4058	broad.mit.edu;mdanderson.org	37	15	41803628	41803628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LTK	NM_001135685	exon6	c.G806C	p.G269A	GCCGCCCCGCCTC	.	21	9	12	0	.	1377	G	41803628	C	G	41803628	3	3	105	1	0	0	0	0	1	0	0	0	9080	623	22	4	1848	4	LTK	15	41803628	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		41803628	60727764	103	13024											
APH1B	83464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63571457	63571457	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	APH1B	NM_001145646	exon2	c.C211T	p.L71L	AAATATCTGCTGA	.	156	14	126	0	.	658	T	63571457	C	T	63571457	2	4	105	1	0	0	0	0	0	0	0	1	772	912	32	3		3	APH1B	15	63571457	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	21767829	63571457	38959935	104	13025											
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69331285	69331285	+	Missense_Mutation	SNP	A	A	G	rs148791297	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NOX5	NM_024505	exon9	c.A1460G	p.Y487C	CTCGCTATGAGTG	.	148	67	94	0	A|0.999;G|0.001	136	G	69331285	A	G	69331285	3	3	105	1	0	0	0	0	1	0	0	0	10559	449	16	2	1527	2	NOX5	15	69331285	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	5759828	69331285	33200107	105	13026											
PSTPIP1	9051	broad.mit.edu;ucsc.edu	37	15	77310541	77310541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PSTPIP1	NM_003978	exon2	c.T89C	p.L30P	GGCTTCTGGATGG	.	105	10	113	2	.	23	C	77310541	T	C	77310541	3	2	105	1	0	0	0	0	1	0	0	0	12721	1580	55	2	95	2	PSTPIP1	15	77310541	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	7979256	77310541	25220851	106	13027											
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	92397220	92397220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLCO3A1	NM_013272	exon1	c.A82G	p.K28E	AACAAGAAAAAGA	.	100	38	113	0	.	91	G	92397220	A	G	92397220	3	3	105	1	0	0	0	0	1	0	0	0	14728	247	9	2	84	2	SLCO3A1	15	92397220	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	15086679	92397220	10134172	107	13028											
HYDIN	54768	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70841914	70841914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HYDIN	NM_001270974	exon86	c.G14935T	p.G4979C	CCTGGCCTCCTGG	.	122	62	93	1	.	92	A	70841914	C	A	70841914	3	1	105	1	0	0	0	0	1	0	0	0	7467	681	24	3	434	3	HYDIN	16	70841914	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		70841914	19512839	108	13029											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72828036	72828036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZFHX3	NM_006885	exon9	c.G8545C	p.D2849H	CCTCGTCTCCAGT	.	88	44	72	0	.	72	G	72828036	C	G	72828036	3	3	105	1	0	0	0	0	1	0	0	0	17631	913	32	4	2574	4	ZFHX3	16	72828036	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	1986122	72828036	17526717	109	13030											
LDHD	197257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75147448	75147448	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LDHD	NM_153486	exon8	c.G1140T	p.T380T	TGGCCGCGTGGCC	.	61	31	53	0	.	90	A	75147448	C	A	75147448	2	1	105	1	0	0	0	0	0	0	0	1	8703	755	27	1		1	LDHD	16	75147448	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	2319412	75147448	15207305	110	13031											
ZC3H18	124245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88696976	88696976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZC3H18	NM_144604	exon17	c.G2650T	p.A884S	CCTGCAGCCCCGG	.	18	9	30	0	.	69	T	88696976	G	T	88696976	3	4	105	1	0	0	0	0	1	0	0	0	17565	971	34	3	2712	3	ZC3H18	16	88696976	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	13549528	88696976	1657777	111	13032											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10223741	10223741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYH13	NM_003802	exon25	c.G3184A	p.D1062N	TCAGATCTCCTTC	.	81	69	90	0	.	6	T	10223741	C	T	10223741	3	4	105	1	0	0	0	0	1	0	0	0	10032	913	32	3	2700	3	MYH13	17	10223741	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		10223741	70971469	112	13033											
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10549294	10549294	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYH3	NM_002470	exon11	c.G954A	p.E318E	CAGGATCTCCCCC	.	189	11	211	0	.	95	T	10549294	C	T	10549294	2	4	105	1	0	0	0	0	0	0	0	1	10036	912	32	3		3	MYH3	17	10549294	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	325553	10549294	70645916	113	13034											
SARM1	23098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26723269	26723269	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_015077	exon10	c.C2136T	p.T712T	TGACACCAGTTTG	.	103	59	70	0	.	.	T	26723269	C	T	26723269	2	4	105	1	0	0	0	0	0	0	0	1	13842	581	21	3		3	SARM1	17	26723269	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	16173975	26723269	54471941	114	13035											
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33935332	33935332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AP2B1	NM_001282	exon5	c.A451G	p.I151V	CATGATATCAATG	.	180	110	103	0	.	91	G	33935332	A	G	33935332	3	3	105	1	0	0	0	0	1	0	0	0	741	449	16	2	465	2	AP2B1	17	33935332	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	7212063	33935332	47259878	115	13036											
TOP2A	7153	ucsc.edu;bcgsc.ca	37	17	38560724	38560724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TOP2A	NM_001067	exon18	c.C2066A	p.T689N	GTGGTAGTTTGTC	.	163	87	118	2	.	655	T	38560724	G	T	38560724	3	4	105	1	0	0	0	0	1	0	0	0	16362	1029	36	3	2601	3	TOP2A	17	38560724	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	4625392	38560724	42634486	116	13037											
KRT33B	3884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521232	39521232	+	Missense_Mutation	SNP	G	G	A	rs199838257		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KRT33B	NM_002279	exon6	c.C896T	p.T299M	GTCAGCGTGTTTT	.	132	72	87	1	G|0.999;A|0.000	90	A	39521232	G	A	39521232	3	1	105	1	0	0	0	0	1	0	0	0	8470	1145	40	1	326	1	KRT33B	17	39521232	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	960508	39521232	41673978	117	13038											
PHOSPHO1	162466	broad.mit.edu;mdanderson.org	37	17	47302389	47302389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PHOSPHO1	NM_001143804	exon3	c.G98T	p.C33F	GAGCAGCAGGAGG	.	11	6	10	0	.	90	A	47302389	C	A	47302389	3	1	105	1	0	0	0	0	1	0	0	0	11856	710	25	3	784	3	PHOSPHO1	17	47302389	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	7781157	47302389	33892821	118	13039											
TBX2	6909	broad.mit.edu;mdanderson.org	37	17	59482800	59482800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TBX2	NM_005994	exon6	c.G1289A	p.R430Q	AAGCTCGGAGGAA	.	16	6	16	0	.	226	A	59482800	G	A	59482800	3	1	105	1	0	0	0	0	1	0	0	0	15652	1116	39	1	1311	1	TBX2	17	59482800	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	12180411	59482800	21712410	119	13040											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60767109	60767109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MRC2	NM_006039	exon24	c.G3561A	p.L1187L	TGGGCTGGCTGGC	.	28	17	27	0	.	117	A	60767109	G	A	60767109	2	1	105	1	0	0	0	0	0	0	0	1	9758	1335	47	3		3	MRC2	17	60767109	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	1284309	60767109	20428101	120	13041											
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72921033	72921033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OTOP2	NM_178160	exon2	c.G306T	p.W102C	CATCTGGCTCCGA	.	62	22	40	0	.	134	T	72921033	G	T	72921033	3	4	105	1	0	0	0	0	1	0	0	0	11306	1212	42	3	308	3	OTOP2	17	72921033	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	12153924	72921033	8274177	121	13042											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319755	31319755	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ASXL3	NM_030632	exon11	c.A2387T	p.N796I	GAGAGAACCTTAC	.	58	17	65	0	.	49	T	31319755	A	T	31319755	3	4	105	1	0	0	0	0	1	0	0	0	1068	43	2	4	2429	4	ASXL3	18	31319755	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10		31319755	46757493	122	13043											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34289345	34289345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FHOD3	NM_025135	exon15	c.A1999T	p.R667W	AGGGACAGGACAA	.	100	65	131	0	.	139	T	34289345	A	T	34289345	3	4	105	1	0	0	0	0	1	0	0	0	5883	179	7	4	2057	4	FHOD3	18	34289345	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	2969590	34289345	43787903	123	13044											
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54358525	54358525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR7	NM_052834	exon8	c.G796A	p.V266I	GACTTTGTCTCAT	.	66	16	77	0	.	93	A	54358525	G	A	54358525	3	1	105	1	0	0	0	0	1	0	0	0	17317	1377	48	3	822	3	WDR7	18	54358525	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	20069180	54358525	23718723	124	13045											
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13220610	13220610	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRMT1	NM_001136035	exon10	c.G1149A	p.E383E	TTCACACTCGGGG	.	61	20	41	0	.	92	T	13220610	C	T	13220610	2	4	105	1	0	0	0	0	0	0	0	1	16558	564	20	3		3	TRMT1	19	13220610	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10		13220610	45908373	125	13046											
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14740911	14740911	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	EMR3	NM_032571	exon14	c.C1752A	p.T584T	GATGATGGTGAAG	.	76	34	56	0	.	528	T	14740911	G	T	14740911	2	4	105	1	0	0	0	0	0	0	0	1	5106	1335	47	3		3	EMR3	19	14740911	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	1520301	14740911	44388072	126	13047											
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15233713	15233713	+	Silent	SNP	C	C	A	rs145335506	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ILVBL	NM_006844	exon5	c.G594T	p.S198S	GGTGCCCGACTGG	.	43	16	31	0	C|1.000;T|0.000	92	A	15233713	C	A	15233713	2	1	105	1	0	0	0	0	0	0	0	1	7715	639	23	1		1	ILVBL	19	15233713	Silent	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	492802	15233713	43895270	127	13048											
LSR	51599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	35740010	35740010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LSR	NM_205834	exon1	c.C229T	p.L77F	GTGTGGCTTCTGC	.	90	31	72	0	.	90	T	35740010	C	T	35740010	3	4	105	1	0	0	0	0	1	0	0	0	9064	797	28	3	231	3	LSR	19	35740010	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	20506297	35740010	23388973	128	13049											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36221665	36221665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MLL4	NM_014727	exon26	c.C5334A	p.C1778X	TCGGTGCCGAATT	.	85	32	66	0	.	697	A	36221665	C	A	36221665	4	1	105	1	0	0	0	0	0	1	0	0	9623	747	26	3	5436	3	MLL4	19	36221665	Nonsense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	481655	36221665	22907318	129	13050											
KCNK6	9424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38818018	38818018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCNK6	NM_004823	exon3	c.C917T	p.T306I	CCCACACCGACTA	.	40	21	41	0	.	91	T	38818018	C	T	38818018	3	4	105	1	0	0	0	0	1	0	0	0	8070	507	18	3	927	3	KCNK6	19	38818018	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	2596353	38818018	20310965	130	13051											
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53384284	53384284	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNF320	NM_207333	exon4	c.T1095G	p.A365A	CCGGAAAGCCTTG	.	97	41	60	0	.	91	C	53384284	A	C	53384284	2	2	105	1	0	0	0	0	0	0	0	1	17836	59	3	5		5	ZNF320	19	53384284	Silent	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	14566266	53384284	5744699	131	13052											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	10654131	10654131	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	JAG1	NM_000214	exon1	c.C48A	p.L16L	GAGCAGGAGGCTT	.	73	26	48	0	.	1273	T	10654131	G	T	10654131	2	4	105	1	0	0	0	0	0	0	0	1	7934	1161	41	3		3	JAG1	20	10654131	Silent	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10		10654131	52371389	132	13053											
C20orf111	51526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42826241	42826248	+	Frame_Shift_Del	DEL	GCTTTTGT	GCTTTTGT	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	GCTTTTGT	GCTTTTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C20orf111	NM_016470	exon4	c.323_330del	p.108_110del	AGTCTGGCTTTTG	.	113	37	89	0	.	90	-	42826248	GCTTTTGT	-	42826241	7	5	105	1	0	1	0	1	0	0	0	0	2080	1194	42	0	552	0	C20orf111	20	42826241	Frame_Shift_Del	DEL	GCTTTTGT	TCGA-DD-A73E-01A-12D-A32G-10	32172110	42826241	20199279	133	13054											
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43036067	43036067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HNF4A	NM_178849	exon3	c.C337T	p.R113C	CAGTGCCGCTACT	.	76	31	75	0	.	227	T	43036067	C	T	43036067	3	4	105	1	0	0	0	0	1	0	0	0	7253	652	23	1	400	1	HNF4A	20	43036067	Missense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	209826	43036067	19989453	134	13055											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47865291	47865291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNFX1	NM_021035	exon14	c.T4270C	p.Y1424H	CACCATACAGGAG	.	53	28	48	0	.	24	G	47865291	A	G	47865291	3	3	105	1	0	0	0	0	1	0	0	0	18202	391	14	2	1490	2	ZNFX1	20	47865291	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10	4829224	47865291	15160229	135	13056											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50407317	50407317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SALL4	NM_020436	exon2	c.C1705T	p.L569F	AAATGAGACATTC	.	119	58	72	0	.	92	A	50407317	G	A	50407317	3	1	105	1	0	0	0	0	1	0	0	0	13813	942	33	3	1468	3	SALL4	20	50407317	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	2542026	50407317	12618203	136	13057											
SLC5A1	6523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32487698	32487698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC5A1	NM_000343	exon11	c.A1229G	p.Y410C	ACATCTACGCCAA	.	91	42	68	0	.	91	G	32487698	A	G	32487698	3	3	105	1	0	0	0	0	1	0	0	0	14661	391	14	2	1271	2	SLC5A1	22	32487698	Missense_Mutation	SNP	A	TCGA-DD-A73E-01A-12D-A32G-10		32487698	18816868	137	13058											
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38690173	38690173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSNK1E	NM_001894	exon9	c.A1160G	p.N387S	GAGACGTTGGCGG	.	51	25	43	0	.	1193	C	38690173	T	C	38690173	3	2	105	1	0	0	0	0	1	0	0	0	3953	1725	60	2	98	2	CSNK1E	22	38690173	Missense_Mutation	SNP	T	TCGA-DD-A73E-01A-12D-A32G-10	6202475	38690173	12614393	138	13059											
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14550361	14550361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GLRA2	NM_001118885	exon3	c.G69C	p.R23S	GTTTAGGACGGCT	.	193	171	175	1	.	131	C	14550361	G	C	14550361	3	2	105	1	0	0	0	0	1	0	0	0	6455	1188	41	4	75	4	GLRA2	23	14550361	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10		14550361	140720199	139	13060											
CXorf36	79742	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	45060068	45060068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CXorf36	NM_176819	exon1	c.G4T	p.E2X	GGGGCTCCATCTT	.	40	14	34	0	.	130	A	45060068	C	A	45060068	4	1	105	1	0	0	0	0	0	1	0	0	4106	864	30	3	1372	3	CXorf36	23	45060068	Nonsense_Mutation	SNP	C	TCGA-DD-A73E-01A-12D-A32G-10	30509707	45060068	110210492	140	13061											
NXF3	56000	broad.mit.edu;bcgsc.ca	37	X	102337749	102337749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NXF3	NM_022052	exon8	c.C719A	p.A240E	TTCGATGCCATCT	.	64	5	54	0	.	205	T	102337749	G	T	102337749	3	4	105	1	0	0	0	0	1	0	0	0	10785	1319	46	3	924	3	NXF3	23	102337749	Missense_Mutation	SNP	G	TCGA-DD-A73E-01A-12D-A32G-10	57277681	102337749	52932811	141	13062											
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7723459	7723459	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CAMTA1	NM_015215	exon9	c.C852T	p.R284R	ACACCGCATCATC	.	135	44	126	0	.	520	T	7723459	C	T	7723459	2	4	106	1	0	0	0	0	0	0	0	1	2613	697	25	3		3	CAMTA1	1	7723459	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		7723459	241527162	1	13063											
AADACL3	126767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12785194	12785194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AADACL3	NM_001103170	exon4	c.G284A	p.R95H	GTTACCGCAAGTT	.	136	36	114	0	.	22	A	12785194	G	A	12785194	3	1	106	1	0	0	0	0	1	0	0	0	12	1087	38	1	302	1	AADACL3	1	12785194	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	5061735	12785194	236465427	2	13064											
CAMK2N1	55450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20811831	20811831	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CAMK2N1	NM_018584	exon1	c.C42A	p.P14P	GCCGTAGGGGCTC	.	43	14	42	0	.	93	T	20811831	G	T	20811831	2	4	106	1	0	0	0	0	0	0	0	1	2603	987	35	3		3	CAMK2N1	1	20811831	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	8026637	20811831	228438790	3	13065											
USP1	7398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62916161	62916161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	USP1	NM_001017415	exon9	c.A1867C	p.K623Q	ATAGGTAAGCCAG	.	113	38	114	0	.	659	C	62916161	A	C	62916161	3	2	106	1	0	0	0	0	1	0	0	0	17037	363	13	5	1897	5	USP1	1	62916161	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	42104330	62916161	186334460	4	13066											
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68897225	68897225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPE65	NM_000329	exon11	c.C1172T	p.A391V	GCAGTGGCAGTTG	.	89	29	80	0	.	91	A	68897225	G	A	68897225	3	1	106	1	0	0	0	0	1	0	0	0	13545	1203	42	3	445	3	RPE65	1	68897225	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	5981064	68897225	180353396	5	13067											
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380859	147380859	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GJA8	NM_005267	exon2	c.C777T	p.S259S	CTCCTCCATCCAG	.	110	39	72	0	.	138	T	147380859	C	T	147380859	2	4	106	1	0	0	0	0	0	0	0	1	6405	581	21	3		3	GJA8	1	147380859	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	78483634	147380859	101869762	6	13068											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	204394000	204394000	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PIK3C2B	NM_002646	exon34	c.C4885T	p.R1629X	GACTTCGAGATCC	.	117	50	106	0	.	1310	A	204394000	G	A	204394000	4	1	106	1	0	0	0	0	0	1	0	0	11910	1066	37	1	23	1	PIK3C2B	1	204394000	Nonsense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	57013141	204394000	44856621	7	13069											
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978151	247978151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	OR14A16	NM_001001966	exon1	c.T881C	p.I294T	ACCTTTATGGCCT	.	150	31	139	0	.	46	G	247978151	A	G	247978151	3	3	106	1	0	0	0	0	1	0	0	0	10945	449	16	2	52	2	OR14A16	1	247978151	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	43584151	247978151	1272470	8	13070											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926429	1926429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MYT1L	NM_015025	exon10	c.C1112T	p.T371M	TCCGGCGTCCTTC	.	98	35	84	0	.	95	A	1926429	G	A	1926429	3	1	106	1	0	0	0	0	1	0	0	0	10107	1145	40	1	2506	1	MYT1L	2	1926429	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		1926429	241272944	9	13071											
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39481600	39481600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MAP4K3	NM_003618	exon32	c.A2532T	p.R844S	ATTAGATCTAAAA	.	88	33	90	0	.	550	A	39481600	T	A	39481600	3	1	106	1	0	0	0	0	1	0	0	0	9261	1432	50	4	164	4	MAP4K3	2	39481600	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	37555171	39481600	203717773	10	13072											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73799982	73799982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ALMS1	NM_015120	exon16	c.G10975A	p.V3659M	CGAAGTGTGAAGG	.	150	37	98	0	.	142	A	73799982	G	A	73799982	3	1	106	1	0	0	0	0	1	0	0	0	535	1377	48	3	11037	3	ALMS1	2	73799982	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	34318382	73799982	169399391	11	13073											
AUP1	550	broad.mit.edu;bcgsc.ca	37	2	74754660	74754660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AUP1	NM_181575	exon9	c.T899A	p.L300Q	TGAGCCAGAGTTG	.	85	5	62	0	.	90	T	74754660	A	T	74754660	3	4	106	1	0	0	0	0	1	0	0	0	1220	188	7	4	349	4	AUP1	2	74754660	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	954678	74754660	168444713	12	13074											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160840493	160840493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLA2R1	NM_001195641	exon13	c.C2129A	p.A710D	ATATGGGCAAAGC	.	205	69	195	0	.	93	T	160840493	G	T	160840493	3	4	106	1	0	0	0	0	1	0	0	0	12010	1203	42	3	2342	3	PLA2R1	2	160840493	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	86085833	160840493	82358880	13	13075											
ITPR1	3708	broad.mit.edu;bcgsc.ca	37	3	4681100	4681100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ITPR1	NM_001099952	exon6	c.G312T	p.E104D	GAATGAGACAGAA	.	135	8	108	0	.	710	T	4681100	G	T	4681100	3	4	106	1	0	0	0	0	1	0	0	0	7920	933	33	3	326	3	ITPR1	3	4681100	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		4681100	193341330	14	13076											
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138289885	138289885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CEP70	NM_024491	exon5	c.A275G	p.Q92R	AGCTGTTGATTAG	.	210	59	182	0	.	69	C	138289885	T	C	138289885	3	2	106	1	0	0	0	0	1	0	0	0	3259	1812	63	2	1574	2	CEP70	3	138289885	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	133608785	138289885	59732545	15	13077											
C3orf72	401089	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138669208	138669208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C3orf72	NM_001040061	exon3	c.G322A	p.A108T	GGCAGCGCTTCGC	.	76	26	51	0	.	22	A	138669208	G	A	138669208	3	1	106	1	0	0	0	0	1	0	0	0	2244	1087	38	1	332	1	C3orf72	3	138669208	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	379323	138669208	59353222	16	13078											
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79229242	79229242	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FRAS1	NM_001166133	exon15	c.T1557C	p.G519G	TGCAGGTTGCTGG	.	130	40	124	2	.	68	C	79229242	T	C	79229242	2	2	106	1	0	0	0	0	0	0	0	1	6042	1712	60	2		2	FRAS1	4	79229242	Silent	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10		79229242	111925034	17	13079											
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87701601	87701601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PTPN13	NM_080685	exon36	c.G5953A	p.A1985T	GTTTCAGCTCCAA	.	84	34	74	0	.	230	A	87701601	G	A	87701601	3	1	106	1	0	0	0	0	1	0	0	0	12782	971	34	3	6091	3	PTPN13	4	87701601	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	8472359	87701601	103452675	18	13080											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115773896	115773896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NDST4	NM_022569	exon8	c.G1801C	p.G601R	GTGGACCAATTAC	.	133	40	132	0	.	94	G	115773896	C	G	115773896	3	3	106	1	0	0	0	0	1	0	0	0	10258	594	21	4	845	4	NDST4	4	115773896	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	28072295	115773896	75380380	19	13081											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599546	3599546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IRX1	NM_024337	exon2	c.A484G	p.M162V	AAGATCATGCTGG	.	117	43	123	0	.	228	G	3599546	A	G	3599546	3	3	106	1	0	0	0	0	1	0	0	0	7843	217	8	2	490	2	IRX1	5	3599546	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10		3599546	177315714	20	13082											
RANBP3L	202151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36253830	36253830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RANBP3L	NM_001161429	exon13	c.G1161T	p.K387N	TTGAATCTTCATT	.	137	37	109	0	.	91	A	36253830	C	A	36253830	3	1	106	1	0	0	0	0	1	0	0	0	13030	912	32	3	323	3	RANBP3L	5	36253830	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	32654284	36253830	144661430	21	13083											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	96350727	96350727	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LNPEP	NM_005575	exon13	c.C2304T	p.A768A	CGAAGCCCTGTTT	.	152	13	114	0	.	229	T	96350727	C	T	96350727	2	4	106	1	0	0	0	0	0	0	0	1	8864	610	22	3		3	LNPEP	5	96350727	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	60096897	96350727	84564533	22	13084											
PHAX	51808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125944167	125944167	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PHAX	NM_032177	exon3	c.C822A	p.L274L	TGGTCTCTTTATA	.	79	20	56	0	.	90	A	125944167	C	A	125944167	2	1	106	1	0	0	0	0	0	0	0	1	11813	900	32	3		3	PHAX	5	125944167	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	29593440	125944167	54971093	23	13085											
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128364118	128364118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC27A6	NM_001017372	exon8	c.A1535T	p.Y512F	ACGTCTATGGTGT	.	70	17	67	0	.	90	T	128364118	A	T	128364118	3	4	106	1	0	0	0	0	1	0	0	0	14530	449	16	4	1565	4	SLC27A6	5	128364118	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	2419951	128364118	52551142	24	13086											
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255085	140255085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_018903	exon1	c.G28C	p.G10R	GGCCCGGGATCCC	.	92	33	49	0	.	.	C	140255085	G	C	140255085	3	2	106	1	0	0	0	0	1	0	0	0	11522	1233	43	4	30	4	PCDHA12	5	140255085	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	11890967	140255085	40660175	25	13087											
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158158157	158158157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EBF1	NM_024007	exon11	c.G1045C	p.E349Q	TGGGTTCGTTGAG	.	84	30	53	0	.	92	G	158158157	C	G	158158157	3	3	106	1	0	0	0	0	1	0	0	0	4880	893	31	4	754	4	EBF1	5	158158157	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	17903072	158158157	22757103	26	13088											
PRRT1	80863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32117487	32117487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRRT1	NM_030651	exon3	c.G571A	p.G191R	GGGTCCCGCCTGC	.	33	12	28	0	.	153	T	32117487	C	T	32117487	3	4	106	1	0	0	0	0	1	0	0	0	12609	652	23	1	357	1	PRRT1	6	32117487	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		32117487	138997580	27	13089											
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44197695	44197695	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC29A1	NM_004955	exon5	c.G366T	p.V122V	GCTGGTGTTTCTG	.	68	23	57	0	.	154	T	44197695	G	T	44197695	2	4	106	1	0	0	0	0	0	0	0	1	14534	1364	48	3		3	SLC29A1	6	44197695	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	12080208	44197695	126917372	28	13090											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65301374	65301374	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EYS	NM_001142800	exon26	c.T4386C	p.S1462S	CCCCCTAGAGACA	.	79	22	79	0	.	660	G	65301374	A	G	65301374	2	3	106	1	0	0	0	0	0	0	0	1	5332	407	15	2		2	EYS	6	65301374	Silent	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	21103679	65301374	105813693	29	13091											
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76124503	76124503	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FILIP1	NM_015687	exon2	c.T186A	p.S62S	TTCTCCAGATGTT	.	244	67	219	0	.	94	T	76124503	A	T	76124503	2	4	106	1	0	0	0	0	0	0	0	1	5894	175	7	4		4	FILIP1	6	76124503	Silent	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	10823129	76124503	94990564	30	13092											
GET4	51608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	930603	930603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GET4	NM_015949	exon5	c.T505G	p.S169A	CTGCACTCAGCGG	.	186	56	148	0	.	90	G	930603	T	G	930603	3	3	106	1	0	0	0	0	1	0	0	0	6336	1551	54	5	523	5	GET4	7	930603	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10		930603	158208060	31	13093											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12610490	12610490	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SCIN	NM_001112706	exon1	c.G78A	p.K26K	TGAGAAGCTGGAG	.	69	15	87	0	.	24	A	12610490	G	A	12610490	2	1	106	1	0	0	0	0	0	0	0	1	13905	962	34	3		3	SCIN	7	12610490	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	11679887	12610490	146528173	32	13094											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21521737	21521737	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SP4	NM_003112	exon5	c.T2103C	p.H701H	AACCCATACAGGT	.	156	53	135	0	.	95	C	21521737	T	C	21521737	2	2	106	1	0	0	0	0	0	0	0	1	14966	1403	49	2		2	SP4	7	21521737	Silent	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	8911247	21521737	137616926	33	13095											
TRIL	9865	broad.mit.edu;mdanderson.org	37	7	28995704	28995704	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	GGTGTCCCCGCGC	.	15	4	11	0	.	.	T	28995704	C	T	28995704	1	4	106	0	1	0	0	0	0	0	0	0	16482	610	22	3		3	TRIL	7	28995704	RNA	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	7473967	28995704	130142959	34	13096											
CROT	54677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86986879	86986879	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CROT	NM_001143935	exon4	c.T172C	p.L58L	GGGTTCTTGGATC	.	32	9	28	0	.	280	C	86986879	T	C	86986879	2	2	106	1	0	0	0	0	0	0	0	1	3894	1606	56	2		2	CROT	7	86986879	Silent	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	57991175	86986879	72151784	35	13097											
C7orf43	55262	hgsc.bcm.edu;broad.mit.edu	37	7	99754128	99754128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C7orf43	NM_018275	exon8	c.C1121A	p.A374D	CAAGAAGCGGTCA	.	118	5	81	0	.	90	T	99754128	G	T	99754128	3	4	106	1	0	0	0	0	1	0	0	0	2393	971	34	3	637	3	C7orf43	7	99754128	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	12767249	99754128	59384535	36	13098											
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138761070	138761070	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZC3HAV1	NM_024625	exon6	c.G1659A	p.E553E	GATCGTCTCCATG	.	95	34	90	0	.	91	T	138761070	C	T	138761070	2	4	106	1	0	0	0	0	0	0	0	1	17572	912	32	3		3	ZC3HAV1	7	138761070	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	39006942	138761070	20377593	37	13099											
TBXAS1	6916	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139653169	139653169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TBXAS1	NM_001166253	exon7	c.G594T	p.M198I	TCAGATGGTTCCC	.	52	5	47	0	.	155	T	139653169	G	T	139653169	3	4	106	1	0	0	0	0	1	0	0	0	15661	1348	47	3	620	3	TBXAS1	7	139653169	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	892099	139653169	19485494	38	13100											
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53084937	53084937	+	Missense_Mutation	SNP	C	C	A	rs147121734	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ST18	NM_014682	exon10	c.G484T	p.D162Y	CTTCATCGCTCTC	.	150	42	117	0	C|0.999;T|0.000	95	A	53084937	C	A	53084937	3	1	106	1	0	0	0	0	1	0	0	0	15211	884	31	1	2727	1	ST18	8	53084937	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		53084937	93279085	39	13101											
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	128428642	128428642	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001159542	exon1	c.G531A	p.K177K	TGGGAAGGTGTTC	.	71	21	60	0	.	.	A	128428642	G	A	128428642	2	1	106	1	0	0	0	0	0	0	0	1	12282	991	35	3		3	POU5F1B	8	128428642	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	75343705	128428642	17935380	40	13102											
FAM135B	51059	broad.mit.edu;bcgsc.ca	37	8	139164944	139164944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM135B	NM_015912	exon13	c.C1774A	p.L592I	TGCTTAGCCCAGT	.	72	6	70	0	.	31	T	139164944	G	T	139164944	3	4	106	1	0	0	0	0	1	0	0	0	5449	962	34	3	2478	3	FAM135B	8	139164944	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	10736302	139164944	7199078	41	13103											
PRPF4	9128	broad.mit.edu;bcgsc.ca	37	9	116045492	116045492	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRPF4	NM_004697	exon5	c.563+1G>T	.	GCCCAGGTAAAGA	.	131	7	141	0	.	93	T	116045492	G	T	116045492	5	4	106	1	0	0	0	0	0	0	1	0	12570	1275	44	3	582	3	PRPF4	9	116045492	Splice_Site	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		116045492	25167939	42	13104											
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131515868	131515868	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZER1	NM_006336	exon4	c.G321A	p.E107E	GTACAGCTCCACC	.	36	10	40	0	.	91	T	131515868	C	T	131515868	2	4	106	1	0	0	0	0	0	0	0	1	17622	796	28	3		3	ZER1	9	131515868	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	15470376	131515868	9697563	43	13105											
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48428812	48428812	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GDF10	NM_004962	exon2	c.C1074T	p.D358D	CTTCTCGTCAAAG	.	160	49	122	0	.	650	A	48428812	G	A	48428812	2	1	106	1	0	0	0	0	0	0	0	1	6311	1136	40	1		1	GDF10	10	48428812	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		48428812	87105935	44	13106											
PRKG1	5592	broad.mit.edu;bcgsc.ca	37	10	52751168	52751168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRKG1	NM_001098512	exon1	c.G30C	p.K10N	TGCCAAGATTCTC	.	237	10	180	1	.	523	C	52751168	G	C	52751168	3	2	106	1	0	0	0	0	1	0	0	0	12522	933	33	4	32	4	PRKG1	10	52751168	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	4322356	52751168	82783579	45	13107											
TM9SF3	56889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98325145	98325145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TM9SF3	NM_020123	exon3	c.G337T	p.D113Y	CTTTATCTAAATC	.	90	26	61	0	.	90	A	98325145	C	A	98325145	3	1	106	1	0	0	0	0	1	0	0	0	15976	913	32	3	1484	3	TM9SF3	10	98325145	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	45573977	98325145	37209602	46	13108											
ZFYVE27	118813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99498236	99498236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZFYVE27	NM_001002261	exon1	c.T2C	p.M1T	ACAGGATGCAGAC	.	42	18	43	0	.	91	C	99498236	T	C	99498236	3	2	106	1	0	0	0	0	1	0	0	0	17666	1464	51	2	4	2	ZFYVE27	10	99498236	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	1173091	99498236	36036511	47	13109											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115985937	115985937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TDRD1	NM_198795	exon22	c.T3137C	p.L1046P	GCCACCTGGCGCT	.	100	38	87	0	.	90	C	115985937	T	C	115985937	3	2	106	1	0	0	0	0	1	0	0	0	15727	1580	55	2	3219	2	TDRD1	10	115985937	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	16487701	115985937	19548810	48	13110											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65116351	65116351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DPF2	NM_006268	exon10	c.C1048G	p.R350G	TGCGATCGTGGCT	.	158	9	139	0	.	91	G	65116351	C	G	65116351	3	3	106	1	0	0	0	0	1	0	0	0	4717	884	31	4	1086	4	DPF2	11	65116351	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		65116351	69890165	49	13111											
SPCS2	9789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74660392	74660392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SPCS2	NM_014752	exon1	c.G62A	p.G21D	GGGCTGGTGGTGC	.	66	25	43	0	.	113	A	74660392	G	A	74660392	3	1	106	1	0	0	0	0	1	0	0	0	15023	1261	44	3	64	3	SPCS2	11	74660392	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	9544041	74660392	60346124	50	13112											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71003577	71003577	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PTPRB	NM_001206972	exon1	c.C18T	p.A6A	CAACCCGGCTCCA	.	93	27	74	0	.	226	A	71003577	G	A	71003577	2	1	106	1	0	0	0	0	0	0	0	1	12796	1103	39	1		1	PTPRB	12	71003577	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		71003577	62848318	51	13113											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109677646	109677646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ACACB	NM_001093	exon34	c.C4674A	p.F1558L	CTCCTTCGAATAC	.	66	12	50	0	.	98	A	109677646	C	A	109677646	3	1	106	1	0	0	0	0	1	0	0	0	107	883	31	1	4808	1	ACACB	12	109677646	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	38674069	109677646	24174249	52	13114											
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113303242	113303242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPH3A	NM_001143854	exon6	c.A254T	p.N85I	TAGAAAACATGAG	.	88	18	90	0	.	519	T	113303242	A	T	113303242	3	4	106	1	0	0	0	0	1	0	0	0	13551	43	2	4	268	4	RPH3A	12	113303242	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	3625596	113303242	20548653	53	13115											
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454719	84454719	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLITRK1	NM_052910	exon1	c.T924A	p.G308G	CTTTGTACCTCCG	.	83	42	125	0	.	94	T	84454719	A	T	84454719	2	4	106	1	0	0	0	0	0	0	0	1	14742	378	14	4		4	SLITRK1	13	84454719	Silent	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10		84454719	30715159	54	13116											
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113795287	113795287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	F10	NM_000504	exon5	c.A425T	p.E142V	GCCACGAGGAACA	.	117	27	91	0	.	227	T	113795287	A	T	113795287	3	4	106	1	0	0	0	0	1	0	0	0	5336	304	11	4	443	4	F10	13	113795287	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	29340568	113795287	1374591	55	13117											
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41388013	41388013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	INO80	NM_017553	exon3	c.G257T	p.G86V	CCTGCTCCAGAAG	.	101	33	93	0	.	72	A	41388013	C	A	41388013	3	1	106	1	0	0	0	0	1	0	0	0	7746	855	30	3	4549	3	INO80	15	41388013	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		41388013	61143379	56	13118											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	42028493	42028493	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MGA	NM_001080541	exon13	c.G4031A	p.W1344X	GCAACTGGGAGGA	.	96	33	83	0	.	522	A	42028493	G	A	42028493	4	1	106	1	0	0	0	0	0	1	0	0	9540	1357	47	3	4077	3	MGA	15	42028493	Nonsense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	640480	42028493	60502899	57	13119											
SLC12A1	6557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48500235	48500235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC12A1	NM_001184832	exon2	c.G319A	p.D107N	ACCATGGATGCCG	.	99	37	91	1	.	24	A	48500235	G	A	48500235	3	1	106	1	0	0	0	0	1	0	0	0	14382	1174	41	3	321	3	SLC12A1	15	48500235	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	6471742	48500235	54031157	58	13120											
DMXL2	23312	broad.mit.edu;bcgsc.ca	37	15	51757753	51757761	+	Splice_Site	DEL	CCAAACTCA	CCAAACTCA	-	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	CCAAACTCA	CCAAACTCA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DMXL2	.	.	.	.	TAAATTCCAAACT	.	207	32	204	0	.	99	-	51757761	CCAAACTCA	-	51757753	8	5	106	1	0	1	0	1	0	0	1	0	4595	870	30	0		0	DMXL2	15	51757753	Splice_Site	DEL	CCAAACTCA	TCGA-DD-A73F-01A-11D-A32G-10	3257518	51757753	50773639	59	13121											
PIGB	9488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	55647553	55647553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PIGB	NM_004855	exon12	c.G1588A	p.E530K	TTGCCAGAGGGTC	.	181	13	147	0	.	226	A	55647553	G	A	55647553	3	1	106	1	0	0	0	0	1	0	0	0	11885	943	33	3	1634	3	PIGB	15	55647553	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	3889800	55647553	46883839	60	13122											
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59192012	59192012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLTM	NM_024755	exon7	c.T714C	p.A238A	ATCCTCAGCTTCT	.	124	43	106	0	.	91	G	59192012	A	G	59192012	2	3	106	1	0	0	0	0	0	0	0	1	14754	175	7	2		2	SLTM	15	59192012	Silent	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	3544459	59192012	43339380	61	13123											
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65622666	65622666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IGDCC3	NM_004884	exon11	c.G1823A	p.R608H	ACAAAGCGGACTG	.	107	40	97	0	.	93	T	65622666	C	T	65622666	3	4	106	1	0	0	0	0	1	0	0	0	7568	768	27	1	637	1	IGDCC3	15	65622666	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	6430654	65622666	36908726	62	13124											
SEMA7A	8482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74703983	74703983	+	Silent	SNP	G	G	A	rs150179930	byfrequency	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SEMA7A	NM_003612	exon12	c.C1491T	p.G497G	GCCCCCGCCATAG	.	72	21	28	0	G|0.994;A|0.006	153	A	74703983	G	A	74703983	2	1	106	1	0	0	0	0	0	0	0	1	14043	1074	38	1		1	SEMA7A	15	74703983	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	9081317	74703983	27827409	63	13125											
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24920370	24920370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC5A11	NM_052944	exon14	c.A1603C	p.T535P	CTCATCACTGTCT	.	109	10	102	0	.	92	C	24920370	A	C	24920370	3	2	106	1	0	0	0	0	1	0	0	0	14663	159	6	5	1653	5	SLC5A11	16	24920370	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10		24920370	65434383	64	13126											
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50339757	50339757	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ADCY7	NM_001114	exon13	c.C1749T	p.R583R	TGAGCGCGAGGTG	.	113	41	106	0	.	91	T	50339757	C	T	50339757	2	4	106	1	0	0	0	0	0	0	0	1	299	755	27	1		1	ADCY7	16	50339757	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	25419387	50339757	40014996	65	13127											
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4789860	4789860	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MINK1	NM_170663	exon10	c.G888A	p.R296R	GGAGCGGCAGGTC	.	65	20	55	0	.	943	A	4789860	G	A	4789860	2	1	106	1	0	0	0	0	0	0	0	1	9587	1190	42	3		3	MINK1	17	4789860	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		4789860	76405350	66	13128											
DCC	1630	broad.mit.edu;bcgsc.ca	37	18	50278659	50278659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DCC	NM_005215	exon2	c.G327T	p.K109N	CCACAAGCCAGAT	.	190	8	126	1	.	225	T	50278659	G	T	50278659	3	4	106	1	0	0	0	0	1	0	0	0	4282	962	34	3	333	3	DCC	18	50278659	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		50278659	27798589	67	13129											
LMNB2	84823	ucsc.edu;bcgsc.ca	37	19	2431870	2431870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LMNB2	NM_032737	exon10	c.A1621G	p.S541G	GGGGGCTGTGGGC	.	44	4	32	0	.	290	C	2431870	T	C	2431870	3	2	106	1	0	0	0	0	1	0	0	0	8850	1580	55	2	253	2	LMNB2	19	2431870	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10		2431870	56697113	68	13130											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074914	9074914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MUC16	NM_024690	exon3	c.T12532C	p.S4178P	CTTGTGATGTCAA	.	181	64	128	0	.	566	G	9074914	A	G	9074914	3	3	106	1	0	0	0	0	1	0	0	0	9973	333	12	2	31319	2	MUC16	19	9074914	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	6643044	9074914	50054069	69	13131											
ATP4A	495	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36050844	36050844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ATP4A	NM_000704	exon7	c.G919A	p.A307T	GGCCCGCGATGAT	.	185	53	183	1	.	91	T	36050844	C	T	36050844	3	4	106	1	0	0	0	0	1	0	0	0	1145	768	27	1	2252	1	ATP4A	19	36050844	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	26975930	36050844	23078139	70	13132											
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189778	38189778	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZNF607	NM_032689	exon5	c.G1254A	p.E418E	GGGTTTCTCACCG	.	70	26	67	0	.	90	T	38189778	C	T	38189778	2	4	106	1	0	0	0	0	0	0	0	1	18030	912	32	3		3	ZNF607	19	38189778	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	2138934	38189778	20939205	71	13133											
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	44278585	44278585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KCNN4	NM_002250	exon3	c.G442C	p.G148R	CTTCCCCTTGGCC	.	47	18	62	0	.	92	G	44278585	C	G	44278585	3	3	106	1	0	0	0	0	1	0	0	0	8081	681	24	4	865	4	KCNN4	19	44278585	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	6088807	44278585	14850398	72	13134											
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48602999	48602999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLA2G4C	NM_001159322	exon5	c.G406C	p.A136P	TCGCTGCTTGGAT	.	96	27	92	0	.	92	G	48602999	C	G	48602999	3	3	106	1	0	0	0	0	1	0	0	0	12003	797	28	4	1305	4	PLA2G4C	19	48602999	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	4324414	48602999	10525984	73	13135											
FCGRT	2217	broad.mit.edu;ucsc.edu	37	19	50017250	50017250	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FCGRT	NM_001136019	exon3	c.A185T	p.N62I	GCTACAATAGCCT	.	71	4	72	0	.	91	T	50017250	A	T	50017250	3	4	106	1	0	0	0	0	1	0	0	0	5786	101	4	4	191	4	FCGRT	19	50017250	Missense_Mutation	SNP	A	TCGA-DD-A73F-01A-11D-A32G-10	1414251	50017250	9111733	74	13136											
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56369797	56369797	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NLRP4	NM_134444	exon3	c.C1038T	p.I346I	CTGGATCCTGTGT	.	74	32	49	0	.	216	T	56369797	C	T	56369797	2	4	106	1	0	0	0	0	0	0	0	1	10479	845	30	3		3	NLRP4	19	56369797	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	6352547	56369797	2759186	75	13137											
MC3R	4159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54824818	54824818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	MC3R,NS,carcinoma,0	MC3R	NM_019888	exon1	c.C919T	p.R307C	GAATTGCGCAACA	.	203	53	131	0	.	660	T	54824818	C	T	54824818	3	4	106	1	0	0	0	0	1	0	0	0	9365	768	27	1	921	1	MC3R	20	54824818	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		54824818	8200702	76	13138											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61981053	61981053	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CHRNA4	NM_000744	exon5	c.C1710T	p.G570G	CTGGACGCCCTCC	.	127	61	82	0	.	91	A	61981053	G	A	61981053	2	1	106	1	0	0	0	0	0	0	0	1	3385	1074	38	1		1	CHRNA4	20	61981053	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	7156235	61981053	1044467	77	13139											
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10971325	10971325	+	Missense_Mutation	SNP	G	G	T	rs139096194	byfrequency;alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TPTE	NM_199259	exon5	c.C32A	p.A11E	ACTCCCGCCAGGT	.	101	21	51	0	G|1.000;A|0.000	344	T	10971325	G	T	10971325	3	4	106	1	0	0	0	0	1	0	0	0	16427	1087	38	1	1703	1	TPTE	21	10971325	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10		10971325	37158570	78	13140											
KRTAP13-2	337959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31744148	31744148	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KRTAP13-2	NM_181621	exon1	c.A384G	p.R128R	CAGGGATCTGACA	.	91	31	86	0	.	90	C	31744148	T	C	31744148	2	2	106	1	0	0	0	0	0	0	0	1	8523	1432	50	2		2	KRTAP13-2	21	31744148	Silent	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10	20772823	31744148	16385747	79	13141											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37893159	37893159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CARD10	NM_014550	exon12	c.G1814A	p.R605Q	GGGCTCCGGCCAG	.	149	80	84	0	.	662	T	37893159	C	T	37893159	3	4	106	1	0	0	0	0	1	0	0	0	2644	652	23	1	1320	1	CARD10	22	37893159	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10		37893159	13411407	80	13142											
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41895734	41895734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ACO2	NM_001098	exon2	c.C41G	p.A14G	AGAAAGCTCTGGG	.	27	10	19	0	.	290	G	41895734	C	G	41895734	3	3	106	1	0	0	0	0	1	0	0	0	147	797	28	4	47	4	ACO2	22	41895734	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	4002575	41895734	9408832	81	13143											
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40498275	40498275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CXorf38	NM_144970	exon3	c.A457C	p.K153Q	CTTTCTTTCGATC	.	109	39	86	0	.	131	G	40498275	T	G	40498275	3	3	106	1	0	0	0	0	1	0	0	0	4107	1850	64	5	518	5	CXorf38	23	40498275	Missense_Mutation	SNP	T	TCGA-DD-A73F-01A-11D-A32G-10		40498275	114772285	82	13144											
CXorf36	79742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	45011086	45011086	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CXorf36	NM_176819	exon5	c.G1113A	p.Q371Q	CCTCCCCTGGAGA	.	149	53	153	0	.	130	T	45011086	C	T	45011086	2	4	106	1	0	0	0	0	0	0	0	1	4106	680	24	3		3	CXorf36	23	45011086	Silent	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	4512811	45011086	110259474	83	13145											
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53577955	53577955	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HUWE1	NM_031407	exon65	c.C9292A	p.R3098R	GCTCTCGTCTCAG	.	131	6	136	0	.	280	T	53577955	G	T	53577955	2	4	106	1	0	0	0	0	0	0	0	1	7461	1153	40	1		1	HUWE1	23	53577955	Silent	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	8566869	53577955	101692605	84	13146											
FAM46D	169966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79698375	79698375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM46D	NM_001170574	exon5	c.C337T	p.P113S	TTTTTACCAAAAG	.	158	52	154	0	.	130	T	79698375	C	T	79698375	3	4	106	1	0	0	0	0	1	0	0	0	5568	507	18	3	339	3	FAM46D	23	79698375	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	26120420	79698375	75572185	85	13147											
COL4A6	1288	ucsc.edu;bcgsc.ca	37	X	107402853	107402853	+	Missense_Mutation	SNP	G	G	T	rs201417622	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	COL4A6	NM_001847	exon44	c.C4654A	p.P1552T	TCATGGGGATAGG	.	257	106	202	2	G|0.999;C|0.001	199	T	107402853	G	T	107402853	3	4	106	1	0	0	0	0	1	0	0	0	3695	1232	43	3	429	3	COL4A6	23	107402853	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	27704478	107402853	47867707	86	13148											
GPR101	83550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	136113472	136113472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GPR101	NM_054021	exon1	c.C362A	p.T121N	ACAATGGTGTTGA	.	73	36	39	0	.	134	T	136113472	G	T	136113472	3	4	106	1	0	0	0	0	1	0	0	0	6622	1261	44	3	1167	3	GPR101	23	136113472	Missense_Mutation	SNP	G	TCGA-DD-A73F-01A-11D-A32G-10	28710619	136113472	19157088	87	13149											
TKTL1	8277	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153556013	153556013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TKTL1	NM_012253	exon11	c.C1478T	p.A493V	CAGCTGCTGATGA	.	214	62	205	1	.	134	T	153556013	C	T	153556013	3	4	106	1	0	0	0	0	1	0	0	0	15932	797	28	3	1520	3	TKTL1	23	153556013	Missense_Mutation	SNP	C	TCGA-DD-A73F-01A-11D-A32G-10	17442541	153556013	1714547	88	13150											
FBLIM1	54751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	16096974	16096974	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FBLIM1	NM_001024215	exon5	c.C612G	p.Y204X	GCAGTACCATGCC	.	41	11	48	0	.	91	G	16096974	C	G	16096974	4	3	107	1	0	0	0	0	0	1	0	0	5697	518	18	4	626	4	FBLIM1	1	16096974	Nonsense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		16096974	233153647	1	13151											
USP24	23358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55549487	55549488	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	USP24	NM_015306	exon57	c.6840_6841insT	p.N2280fs	AGCACAGTTTTTA	.	311	159	372	0	.	521	A	55549488	-	A	55549487	7	5	107	1	0	1	1	0	0	0	0	0	17052	1020	36	0	1070	0	USP24	1	55549487	Frame_Shift_Ins	INS	-	TCGA-DD-A73G-01A-22D-A32G-10	39452513	55549487	193701134	2	13152											
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64038167	64038167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EFCAB7	NM_032437	exon14	c.A1870G	p.I624V	TATTGTATATATT	.	487	81	447	0	.	68	G	64038167	A	G	64038167	3	3	107	1	0	0	0	0	1	0	0	0	4940	449	16	2	1920	2	EFCAB7	1	64038167	Missense_Mutation	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	8488680	64038167	185212454	3	13153											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150529206	150529206	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ADAMTSL4	NM_019032	exon10	c.G1686A	p.R562R	TCCCAGGGAGGAG	.	84	7	57	0	.	92	A	150529206	G	A	150529206	2	1	107	1	0	0	0	0	0	0	0	1	277	1223	43	3		3	ADAMTSL4	1	150529206	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	86491039	150529206	98721415	4	13154											
SPRR3	6707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152975594	152975594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SPRR3	NM_001097589	exon2	c.T98G	p.F33C	AAATATTTGTTCC	.	172	58	144	0	.	45	G	152975594	T	G	152975594	3	3	107	1	0	0	0	0	1	0	0	0	15102	1841	64	5	100	5	SPRR3	1	152975594	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	2446388	152975594	96275027	5	13155											
OR10K2	391107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158390017	158390017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OR10K2	NM_001004476	exon1	c.A640T	p.I214F	CCAAGATCAACAA	.	126	20	70	0	.	69	A	158390017	T	A	158390017	3	1	107	1	0	0	0	0	1	0	0	0	10914	1435	50	4	300	4	OR10K2	1	158390017	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	5414423	158390017	90860604	6	13156											
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	172356431	172356431	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DNM3	NM_015569	exon19	c.C2217T	p.I739I	GGACATCAGCACA	.	111	9	75	0	.	90	T	172356431	C	T	172356431	2	4	107	1	0	0	0	0	0	0	0	1	4673	816	29	3		3	DNM3	1	172356431	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	13966414	172356431	76894190	7	13157											
C4BPA	722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207288822	207288822	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	C4BPA	NM_000715	exon4	c.A390G	p.L130L	AGATTTATCTTTT	.	108	26	79	0	.	154	G	207288822	A	G	207288822	2	3	107	1	0	0	0	0	0	0	0	1	2249	446	16	2		2	C4BPA	1	207288822	Silent	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	34932391	207288822	41961799	8	13158											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207871016	207871016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CR1L	NM_175710	exon6	c.G1031C	p.R344T	CCCCCAGATGTGA	.	471	67	303	0	.	46	C	207871016	G	C	207871016	3	2	107	1	0	0	0	0	1	0	0	0	3841	942	33	4	1053	4	CR1L	1	207871016	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	582194	207871016	41379605	9	13159											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216363610	216363610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	USH2A	NM_007123	exon20	c.G4351T	p.G1451C	CACAACCAACTGA	.	94	19	60	0	.	115	A	216363610	C	A	216363610	3	1	107	1	0	0	0	0	1	0	0	0	17033	594	21	3	11483	3	USH2A	1	216363610	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	8492594	216363610	32887011	10	13160											
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226829808	226829808	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ITPKB	NM_002221	exon5	c.G2265A	p.E755E	CGTGAGCTCCTCC	.	68	8	40	0	.	230	T	226829808	C	T	226829808	2	4	107	1	0	0	0	0	0	0	0	1	7918	796	28	3		3	ITPKB	1	226829808	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	10466198	226829808	22420813	11	13161											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232607246	232607246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SIPA1L2	NM_020808	exon6	c.A2114T	p.D705V	ACGATGTCATTTC	.	99	19	102	0	.	95	A	232607246	T	A	232607246	3	1	107	1	0	0	0	0	1	0	0	0	14330	1667	58	4	3118	4	SIPA1L2	1	232607246	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	5777438	232607246	16643375	12	13162											
SMYD3	64754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	246021833	246021833	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SMYD3	NM_001167740	exon10	c.C1041T	p.A347A	GAACAAGGCTTCC	.	121	12	95	0	.	226	A	246021833	G	A	246021833	2	1	107	1	0	0	0	0	0	0	0	1	14823	987	35	3		3	SMYD3	1	246021833	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	13414587	246021833	3228788	13	13163											
SOX11	6664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	5834087	5834087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	SOX11,brain,glioma,0	SOX11	NM_003108	exon1	c.G1234T	p.E412X	CACTTCGAGTTCC	.	70	19	59	1	.	514	T	5834087	G	T	5834087	4	4	107	1	0	0	0	0	0	1	0	0	14942	1059	37	1	1236	1	SOX11	2	5834087	Nonsense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		5834087	237365286	14	13164											
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20454712	20454712	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PUM2	NM_015317	exon18	c.C2782T	p.L928L	GTTCCAGTACATG	.	204	45	227	0	.	91	A	20454712	G	A	20454712	2	1	107	1	0	0	0	0	0	0	0	1	12826	1020	36	3		3	PUM2	2	20454712	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	14620625	20454712	222744661	15	13165											
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27559284	27559284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GTF3C2	NM_001521	exon9	c.C1136T	p.S379F	GTGATCGAGCTAA	.	62	9	86	0	.	92	A	27559284	G	A	27559284	3	1	107	1	0	0	0	0	1	0	0	0	6873	1059	37	1	1647	1	GTF3C2	2	27559284	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	7104572	27559284	215640089	16	13166											
ZFP36L2	678	hgsc.bcm.edu;mdanderson.org	37	2	43451848	43451848	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZFP36L2	NM_006887	exon2	c.C1095T	p.F365F	CGGACCGAAGGCG	.	26	8	9	0	.	226	A	43451848	G	A	43451848	2	1	107	1	0	0	0	0	0	0	0	1	17644	1049	37	1		1	ZFP36L2	2	43451848	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	15892564	43451848	199747525	17	13167											
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97370374	97370374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FER1L5	NM_001113382	exon52	c.G6227T	p.G2076V	ACCCAGGACCCAC	.	135	27	151	0	.	23	T	97370374	G	T	97370374	3	4	107	1	0	0	0	0	1	0	0	0	5814	1174	41	3	6433	3	FER1L5	2	97370374	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	53918526	97370374	145828999	18	13168											
RGPD4	285190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108499228	108499228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RGPD4	NM_182588	exon22	c.T5165C	p.F1722S	TCATTTTCTTGAA	.	893	181	1132	1	.	2	C	108499228	T	C	108499228	3	2	107	1	0	0	0	0	1	0	0	0	13288	1783	62	2	5251	2	RGPD4	2	108499228	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	11128854	108499228	134700145	19	13169											
BIN1	274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	127806198	127806198	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	BIN1	NM_139343	exon19	c.G1686A	p.W562X	CATGAGCCAGCCT	.	89	22	101	0	.	655	T	127806198	C	T	127806198	4	4	107	1	0	0	0	0	0	1	0	0	1432	740	26	3	99	3	BIN1	2	127806198	Nonsense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	19306970	127806198	115393175	20	13170											
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128262855	128262855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IWS1	NM_017969	exon3	c.G624T	p.M208I	ATCACTCATTCGA	.	149	31	159	0	.	91	A	128262855	C	A	128262855	3	1	107	1	0	0	0	0	1	0	0	0	7931	826	29	3	1883	3	IWS1	2	128262855	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	456657	128262855	114936518	21	13171											
POTEE	445582	broad.mit.edu;bcgsc.ca	37	2	131976218	131976218	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	.	NM_001083538	exon1	c.C243A	p.G81G	CGTGGGCGCTTCT	.	109	23	123	1	.	.	A	131976218	C	A	131976218	2	1	107	1	0	0	0	0	0	0	0	1	12264	755	27	1		1	POTEE	2	131976218	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	3713363	131976218	111223155	22	13172											
EVX2	344191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176945497	176945497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EVX2	NM_001080458	exon3	c.G769A	p.D257N	TGGGGTCGGCTGG	.	17	8	32	0	.	70	T	176945497	C	T	176945497	3	4	107	1	0	0	0	0	1	0	0	0	5295	884	31	1	663	1	EVX2	2	176945497	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	44969279	176945497	66253876	23	13173											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179410949	179410949	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TTN	NM_001267550	exon342	c.C95109T	p.V31703V	CACTTTGACCATG	.	70	11	55	0	.	636	A	179410949	G	A	179410949	2	1	107	1	0	0	0	0	0	0	0	1	16732	1277	45	3		3	TTN	2	179410949	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	2465452	179410949	63788424	24	13174											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179431181	179431181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TTN	NM_001267550	exon326	c.A79678G	p.K26560E	GTATTTTATACTC	.	47	10	80	0	.	636	C	179431181	T	C	179431181	3	2	107	1	0	0	0	0	1	0	0	0	16732	1763	61	2	28449	2	TTN	2	179431181	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	20232	179431181	63768192	25	13175											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180308145	180308145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF385B	NM_152520	exon10	c.C1248G	p.F416L	GGACAGGAAGGCT	.	19	5	45	0	.	23	C	180308145	G	C	180308145	3	2	107	1	0	0	0	0	1	0	0	0	17874	1165	41	4	171	4	ZNF385B	2	180308145	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	876964	180308145	62891228	26	13176											
STAT4	6775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192011406	192011406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	STAT4	NM_001243835	exon3	c.G206T	p.G69V	ACACGACCTAACT	.	108	15	98	0	.	914	A	192011406	C	A	192011406	3	1	107	1	0	0	0	0	1	0	0	0	15266	507	18	3	2128	3	STAT4	2	192011406	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	11703261	192011406	51187967	27	13177											
SLC11A1	6556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219254739	219254739	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SLC11A1	NM_000578	exon9	c.C942T	p.T314T	GAAAACCAACCAG	.	75	20	79	0	.	93	T	219254739	C	T	219254739	2	4	107	1	0	0	0	0	0	0	0	1	14380	581	21	3		3	SLC11A1	2	219254739	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	27243333	219254739	23944634	28	13178											
SCN10A	6336	broad.mit.edu;ucsc.edu	37	3	38739071	38739071	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SCN10A	NM_006514	exon27	c.C5640A	p.P1880P	AGCTCTGGGCACA	.	101	13	84	1	.	99	T	38739071	G	T	38739071	2	4	107	1	0	0	0	0	0	0	0	1	13912	1335	47	3		3	SCN10A	3	38739071	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		38739071	159283359	29	13179											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46006599	46006599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FYCO1	NM_024513	exon9	c.A3076G	p.K1026E	GGCTCTTGCACTC	.	27	6	24	0	.	91	C	46006599	T	C	46006599	3	2	107	1	0	0	0	0	1	0	0	0	6125	1821	63	2	1400	2	FYCO1	3	46006599	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	7267528	46006599	152015831	30	13180											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52441263	52441263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	BAP1,uveal_tract,malignant_melanoma,0	BAP1	NM_004656	exon7	c.C507G	p.H169Q	GACAAAGTGGAAC	.	55	32	85	0	.	1032	C	52441263	G	C	52441263	3	2	107	1	0	0	0	0	1	0	0	0	1311	1020	36	4	1726	4	BAP1	3	52441263	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	6434664	52441263	145581167	31	13181											
GPR128	84873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100328724	100328724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GPR128	NM_032787	exon1	c.C24A	p.N8K	CTGGAACCTTAGG	.	158	24	195	0	.	94	A	100328724	C	A	100328724	3	1	107	1	0	0	0	0	1	0	0	0	6641	506	18	3	26	3	GPR128	3	100328724	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	47887461	100328724	97693706	32	13182											
STXBP5L	9515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120959330	120959330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	STXBP5L	NM_014980	exon14	c.C1376G	p.T459R	CACAAACATATCC	.	34	6	38	0	.	77	G	120959330	C	G	120959330	3	3	107	1	0	0	0	0	1	0	0	0	15356	478	17	4	1426	4	STXBP5L	3	120959330	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	20630606	120959330	77063100	33	13183											
RYK	6259	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133921638	133921638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RYK	.	.	.	.	CTACGAGAAATAT	.	164	27	132	1	.	1379	C	133921638	G	C	133921638	3	2	107	1	0	0	0	0	1	0	0	0	13767	942	33	4	1148	4	RYK	3	133921638	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	12962308	133921638	64100792	34	13184											
PTTG2	10744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37962607	37962607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	.	NM_006607	exon1	c.G552T	p.K184N	CTTCAAGCATTCT	.	63	14	68	0	.	.	T	37962607	G	T	37962607	3	4	107	1	0	0	0	0	1	0	0	0	12821	962	34	3	554	3	PTTG2	4	37962607	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		37962607	153191669	35	13185											
PARM1	25849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75971416	75971416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PARM1	NM_015393	exon4	c.T892C	p.S298P	TACGGGTCCTGGG	.	109	35	140	0	.	1	C	75971416	T	C	75971416	3	2	107	1	0	0	0	0	1	0	0	0	11452	1667	58	2	906	2	PARM1	4	75971416	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	38008809	75971416	115182860	36	13186											
DSPP	1834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88534393	88534393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DSPP	NM_014208	exon4	c.G1055T	p.S352I	GAGAAAGCAAACG	.	125	31	151	0	.	90	T	88534393	G	T	88534393	3	4	107	1	0	0	0	0	1	0	0	0	4782	971	34	3	1065	3	DSPP	4	88534393	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	12562977	88534393	102619883	37	13187											
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103225548	103225548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SLC39A8	NM_022154	exon5	c.T766A	p.C256S	CATAGCATGTCAC	.	111	26	104	0	.	90	T	103225548	A	T	103225548	3	4	107	1	0	0	0	0	1	0	0	0	14624	217	8	4	709	4	SLC39A8	4	103225548	Missense_Mutation	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	14691155	103225548	87928728	38	13188											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13866359	13866359	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DNAH5	NM_001369	exon26	c.G4086A	p.Q1362Q	GGCTTCCTGGGGC	.	271	34	198	0	.	182	T	13866359	C	T	13866359	2	4	107	1	0	0	0	0	0	0	0	1	4604	680	24	3		3	DNAH5	5	13866359	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		13866359	167048901	39	13189											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	26881302	26881302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CDH9	NM_016279	exon12	c.2313delG	p.G771fs	ACGAGGCCCCCAG	.	79	19	117	0	.	99	-	26881302	C	-	26881302	7	5	107	1	0	1	0	1	0	0	0	0	3117	726	26	0	60	0	CDH9	5	26881302	Frame_Shift_Del	DEL	C	TCGA-DD-A73G-01A-22D-A32G-10	13014943	26881302	154033958	40	13190											
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79734325	79734325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZFYVE16	NM_001105251	exon4	c.T1821C	p.N607N	AGAAAATGGCCTT	.	210	24	190	0	.	90	C	79734325	T	C	79734325	2	2	107	1	0	0	0	0	0	0	0	1	17661	1461	51	2		2	ZFYVE16	5	79734325	Silent	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	52853023	79734325	101180935	41	13191											
RPS23	6228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	81573513	81573514	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RPS23	NM_001025	exon2	c.163_164insA	p.V55fs	CTTACACTTTTTC	.	103	19	99	0	.	22	T	81573514	-	T	81573513	7	5	107	1	0	1	1	0	0	0	0	0	13634	579	20	0	280	0	RPS23	5	81573513	Frame_Shift_Ins	INS	-	TCGA-DD-A73G-01A-22D-A32G-10	1839188	81573513	99341747	42	13192											
TCF7	6932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133473769	133473769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TCF7	NM_003202	exon4	c.C461A	p.P154H	AGCCCCCCCACGG	.	194	38	162	0	.	90	A	133473769	C	A	133473769	3	1	107	1	0	0	0	0	1	0	0	0	15693	623	22	3	475	3	TCF7	5	133473769	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	51900256	133473769	47441491	43	13193											
REEP2	51308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137780127	137780127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	REEP2	NM_016606	exon4	c.A206C	p.K69T	AACTGAAGATCGC	.	65	11	45	0	.	90	C	137780127	A	C	137780127	3	2	107	1	0	0	0	0	1	0	0	0	13205	72	3	5	220	5	REEP2	5	137780127	Missense_Mutation	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	4306358	137780127	43135133	44	13194											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140221574	140221574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PCDHA8	NM_031856	exon1	c.C668A	p.T223K	AGCTCACAGGCAC	.	138	9	127	0	.	92	A	140221574	C	A	140221574	3	1	107	1	0	0	0	0	1	0	0	0	11530	478	17	3	670	3	PCDHA8	5	140221574	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	2441447	140221574	40693686	45	13195											
ABCF1	23	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30557649	30557649	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ABCF1	NM_001025091	exon22	c.C2131T	p.L711L	GAGTACCTGCAGC	.	93	16	68	0	.	92	T	30557649	C	T	30557649	2	4	107	1	0	0	0	0	0	0	0	1	65	680	24	3		3	ABCF1	6	30557649	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		30557649	140557418	46	13196											
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39286882	39286882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KCNK16	NM_001135106	exon2	c.G241A	p.V81M	GGTTCACACCTTT	.	34	5	41	0	.	229	T	39286882	C	T	39286882	3	4	107	1	0	0	0	0	1	0	0	0	8063	478	17	3	1093	3	KCNK16	6	39286882	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	8729233	39286882	131828185	47	13197											
DST	667	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	56341127	56341127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DST	NM_015548	exon73	c.C13815T	p.A4605A	TGCCCAGGCCAGC	.	64	15	65	0	.	523	A	56341127	G	A	56341127	2	1	107	1	0	0	0	0	0	0	0	1	4783	987	35	3		3	DST	6	56341127	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	17054245	56341127	114773940	48	13198											
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74502505	74502505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CD109	NM_133493	exon23	c.C2858G	p.A953G	AAAAAGCTCTTTC	.	29	6	23	0	.	155	G	74502505	C	G	74502505	3	3	107	1	0	0	0	0	1	0	0	0	2963	797	28	4	2948	4	CD109	6	74502505	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	18161378	74502505	96612562	49	13199											
RNGTT	8732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89554193	89554193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RNGTT	NM_003800	exon11	c.A1152G	p.I384M	TCGTTCTATACAC	.	46	13	84	0	.	91	C	89554193	T	C	89554193	3	2	107	1	0	0	0	0	1	0	0	0	13503	1512	53	2	665	2	RNGTT	6	89554193	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	15051688	89554193	81560874	50	13200											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144875994	144875994	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	UTRN	NM_007124	exon48	c.C7099A	p.R2367R	GCCCGACGGGATC	.	88	20	111	0	.	95	A	144875994	C	A	144875994	2	1	107	1	0	0	0	0	0	0	0	1	17100	527	19	1		1	UTRN	6	144875994	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	55321801	144875994	26239073	51	13201											
TYW1	55253	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	66482951	66482951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TYW1	NM_018264	exon6	c.G682A	p.D228N	GAGGCCGACTTCA	.	104	14	94	0	.	91	A	66482951	G	A	66482951	3	1	107	1	0	0	0	0	1	0	0	0	16815	1058	37	1	704	1	TYW1	7	66482951	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		66482951	92655712	52	13202											
CPSF4	10898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99045802	99045802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CPSF4	NM_001081559	exon3	c.G213T	p.W71C	ACACTGGCTGCGT	.	118	43	121	0	.	90	T	99045802	G	T	99045802	3	4	107	1	0	0	0	0	1	0	0	0	3828	1212	42	3	223	3	CPSF4	7	99045802	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	32562851	99045802	60092861	53	13203											
MLL5	55904	hgsc.bcm.edu;bcgsc.ca	37	7	104742001	104742001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MLL5	NM_018682	exon15	c.G1852C	p.D618H	TGTAAAGATACAC	.	41	6	46	0	.	93	C	104742001	G	C	104742001	3	2	107	1	0	0	0	0	1	0	0	0	9624	942	33	4	1906	4	MLL5	7	104742001	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	5696199	104742001	54396662	54	13204											
EPHB6	2051	hgsc.bcm.edu;bcgsc.ca	37	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT	.	124	9	53	0	.	1489	T	142562074	C	T	142562074	2	4	107	1	0	0	0	0	0	0	0	1	5178	668	24	3		3	EPHB6	7	142562074	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	37820073	142562074	16576589	55	13205											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151849960	151849960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MLL3	NM_170606	exon49	c.C12356T	p.P4119L	ACATCTGGAGCAC	.	139	27	139	0	.	1398	A	151849960	G	A	151849960	3	1	107	1	0	0	0	0	1	0	0	0	9622	1348	47	3	2423	3	MLL3	7	151849960	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	9287886	151849960	7288703	56	13206											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30702749	30702749	+	Missense_Mutation	SNP	G	G	A	rs115550830	alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TEX15	NM_031271	exon1	c.C3785T	p.A1262V	GTTTTCGCCTTTG	.	45	17	101	0	G|0.999;C|0.001	97	A	30702749	G	A	30702749	3	1	107	1	0	0	0	0	1	0	0	0	15776	1087	38	1	4600	1	TEX15	8	30702749	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		30702749	115661273	57	13207											
CPNE3	8895	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	87549817	87549817	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CPNE3	NM_003909	exon7	c.C486A	p.Y162X	CCCATACCTGGAA	.	75	10	69	1	.	117	A	87549817	C	A	87549817	4	1	107	1	0	0	0	0	0	1	0	0	3813	518	18	3	504	3	CPNE3	8	87549817	Nonsense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	56847068	87549817	58814205	58	13208											
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	124266184	124266185	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZHX1	NM_001017926	exon3	c.2003_2004insA	p.T668fs	TCAGGTGTTTTTT	.	175	21	133	0	.	91	T	124266185	-	T	124266184	7	5	107	1	0	1	1	0	0	0	0	0	17672	1377	48	0	622	0	ZHX1	8	124266184	Frame_Shift_Ins	INS	-	TCGA-DD-A73G-01A-22D-A32G-10	36716367	124266184	22097838	59	13209											
IL33	90865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6241766	6241766	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IL33	NM_001199640	exon2	c.C72T	p.A24A	CAAAGCCTTGTGT	.	110	51	131	0	.	90	T	6241766	C	T	6241766	2	4	107	1	0	0	0	0	0	0	0	1	7693	668	24	3		3	IL33	9	6241766	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		6241766	134971665	60	13210											
C5	727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	123768307	123768307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	C5	NM_001735	exon20	c.A2452T	p.K818X	ACACCTTTGCCTT	.	97	18	93	0	.	92	A	123768307	T	A	123768307	4	1	107	1	0	0	0	0	0	1	0	0	2280	1850	64	4	2666	4	C5	9	123768307	Nonsense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	117526541	123768307	17445124	61	13211											
OR1J2	26740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125273953	125273953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OR1J2	NM_054107	exon1	c.C873G	p.S291R	CTACAGCCTTAGG	.	120	29	134	0	.	72	G	125273953	C	G	125273953	3	3	107	1	0	0	0	0	1	0	0	0	10960	738	26	4	875	4	OR1J2	9	125273953	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	1505646	125273953	15939478	62	13212											
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125315781	125315781	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OR1N2	NM_001004457	exon1	c.T333C	p.Y111Y	CTCGTATTCTGGG	.	59	19	59	0	.	72	C	125315781	T	C	125315781	2	2	107	1	0	0	0	0	0	0	0	1	10970	1500	52	2		2	OR1N2	9	125315781	Silent	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	41828	125315781	15897650	63	13213											
WDR37	22884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1149723	1149723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	WDR37	NM_014023	exon10	c.G908T	p.R303L	GGGACCGGACGGC	.	55	11	40	0	.	90	T	1149723	G	T	1149723	3	4	107	1	0	0	0	0	1	0	0	0	17288	1116	39	1	942	1	WDR37	10	1149723	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		1149723	134385024	64	13214											
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5139644	5139644	+	Silent	SNP	C	C	A	rs118150330	byfrequency;alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	AKR1C3	NM_001253909	exon3	c.C271A	p.R91R	TTTCATCGACCAG	.	155	27	159	0	C|0.999;T|0.001	515	A	5139644	C	A	5139644	2	1	107	1	0	0	0	0	0	0	0	1	471	876	31	1		1	AKR1C3	10	5139644	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	3989921	5139644	130395103	65	13215											
ARL5B	221079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18957556	18957556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ARL5B	NM_178815	exon3	c.G205A	p.G69S	ATTGGTGGTCAGG	.	79	18	91	0	.	228	A	18957556	G	A	18957556	3	1	107	1	0	0	0	0	1	0	0	0	940	1348	47	3	215	3	ARL5B	10	18957556	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	13817912	18957556	116577191	66	13216											
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71166949	71166949	+	Missense_Mutation	SNP	C	C	G	rs200848530	alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TACR2	NM_001057	exon4	c.G829C	p.E277Q	TGTCCTCCTGGAA	.	115	35	74	0	.	522	G	71166949	C	G	71166949	3	3	107	1	0	0	0	0	1	0	0	0	15503	864	30	4	375	4	TACR2	10	71166949	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	52209393	71166949	64367798	67	13217											
CYP2C9	1559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96709012	96709012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CYP2C9	NM_000771	exon5	c.A790G	p.I264V	GACTTTATTGATT	.	268	55	250	0	.	96	G	96709012	A	G	96709012	3	3	107	1	0	0	0	0	1	0	0	0	4168	449	16	2	808	2	CYP2C9	10	96709012	Missense_Mutation	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	25542063	96709012	38825735	68	13218											
CALY	50632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135140487	135140487	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CALY	NM_015722	exon4	c.C255A	p.T85T	CCGTGCGGTGGGC	.	101	37	83	0	.	68	T	135140487	G	T	135140487	2	4	107	1	0	0	0	0	0	0	0	1	2595	1103	39	1		1	CALY	10	135140487	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	38431475	135140487	394260	69	13219											
ATHL1	80162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	290808	290808	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ATHL1	NM_025092	exon4	c.C601G	p.L201V	GACTTCCTGACAG	.	31	6	31	0	.	516	G	290808	C	G	290808	3	3	107	1	0	0	0	0	1	0	0	0	1104	680	24	4	611	4	ATHL1	11	290808	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		290808	134715708	70	13220											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	606503	606503	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PHRF1	NM_020901	exon13	c.C1513T	p.L505L	GACCTGCTGGGCA	.	33	19	26	0	.	22	T	606503	C	T	606503	2	4	107	1	0	0	0	0	0	0	0	1	11861	796	28	3		3	PHRF1	11	606503	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	315695	606503	134400013	71	13221											
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10824597	10824597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EIF4G2	NM_001042559	exon11	c.A976G	p.I326V	GACGAATTTGATT	.	62	4	65	0	.	91	C	10824597	T	C	10824597	3	2	107	1	0	0	0	0	1	0	0	0	5037	1493	52	2	1795	2	EIF4G2	11	10824597	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	10218094	10824597	124181919	72	13222											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17191175	17191175	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PIK3C2A	NM_002645	exon1	c.T114C	p.A38A	TGCTAAAGCCTCT	.	92	17	64	0	.	1310	G	17191175	A	G	17191175	2	3	107	1	0	0	0	0	0	0	0	1	11909	59	3	2		2	PIK3C2A	11	17191175	Silent	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	6366578	17191175	117815341	73	13223											
MYBPC3	4607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47364195	47364195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MYBPC3	NM_000256	exon16	c.G1558A	p.E520K	CGTCCTCCAGCAT	.	105	25	124	0	.	92	T	47364195	C	T	47364195	3	4	107	1	0	0	0	0	1	0	0	0	10013	864	30	3	2338	3	MYBPC3	11	47364195	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	30173020	47364195	87642321	74	13224											
MS4A3	932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59837694	59837694	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MS4A3	NM_006138	exon7	c.C633T	p.P211P	ACCTCCCAATTCT	.	61	12	74	0	.	93	T	59837694	C	T	59837694	2	4	107	1	0	0	0	0	0	0	0	1	9861	581	21	3		3	MS4A3	11	59837694	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	12473499	59837694	75168822	75	13225											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43837682	43837682	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ADAMTS20	NM_025003	exon16	c.T2202C	p.Y734Y	AACATTATAACCT	.	81	14	75	0	.	795	G	43837682	A	G	43837682	2	3	107	1	0	0	0	0	0	0	0	1	266	456	16	2		2	ADAMTS20	12	43837682	Silent	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10		43837682	90014213	76	13226											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57573867	57573867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	LRP1	NM_002332	exon31	c.G5179A	p.A1727T	AGCATGGCCAACA	.	62	10	40	0	.	596	A	57573867	G	A	57573867	3	1	107	1	0	0	0	0	1	0	0	0	8951	1203	42	3	5301	3	LRP1	12	57573867	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	13736185	57573867	76278028	77	13227											
ZFC3H1	196441	broad.mit.edu;ucsc.edu	37	12	72022736	72022736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZFC3H1	NM_144982	exon20	c.G3908A	p.S1303N	TCACTACTGAAGC	.	87	11	77	1	.	138	T	72022736	C	T	72022736	3	4	107	1	0	0	0	0	1	0	0	0	17630	565	20	3	2125	3	ZFC3H1	12	72022736	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	14448869	72022736	61829159	78	13228											
UNG	7374	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	109535499	109535499	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	UNG	NM_080911	exon1	c.G15A	p.K5K	CCAGAAGACGCTC	.	223	46	162	0	.	1083	A	109535499	G	A	109535499	2	1	107	1	0	0	0	0	0	0	0	1	16996	933	33	3		3	UNG	12	109535499	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	37512763	109535499	24316396	79	13229											
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113444239	113444239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OAS2	NM_002535	exon8	c.C1490A	p.T497K	GCTCCACACCCAG	.	64	12	49	0	.	91	A	113444239	C	A	113444239	3	1	107	1	0	0	0	0	1	0	0	0	10800	478	17	3	1591	3	OAS2	12	113444239	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	3908740	113444239	20407656	80	13230											
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	72049304	72049304	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DACH1	NM_080759	exon10	c.C2058T	p.G686G	TCTGCCGCCACTG	.	60	9	68	0	.	135	A	72049304	G	A	72049304	2	1	107	1	0	0	0	0	0	0	0	1	4220	1074	38	1		1	DACH1	13	72049304	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		72049304	43120574	81	13231											
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76397962	76397962	+	Missense_Mutation	SNP	T	T	G	rs200869696	alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	LMO7	NM_015842	exon12	c.T2203G	p.S735A	TCTGAATCTGGAG	.	83	21	148	0	T|0.999;C|0.001	586	G	76397962	T	G	76397962	3	3	107	1	0	0	0	0	1	0	0	0	8855	1435	50	5	3120	5	LMO7	13	76397962	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	4348658	76397962	38771916	82	13232											
DNAJC3	5611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96409903	96409903	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DNAJC3	NM_006260	exon5	c.A399G	p.K133K	GCTCAAATCTAAT	.	36	8	47	0	.	226	G	96409903	A	G	96409903	2	3	107	1	0	0	0	0	0	0	0	1	4647	98	4	2		2	DNAJC3	13	96409903	Silent	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	20011941	96409903	18759975	83	13233											
IL25	64806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23842468	23842468	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IL25	NM_022789	exon1	c.C141T	p.T47T	GGACACCTCTGAG	.	39	11	39	0	.	91	T	23842468	C	T	23842468	2	4	107	1	0	0	0	0	0	0	0	1	7678	668	24	3		3	IL25	14	23842468	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		23842468	83507072	84	13234											
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24545726	24545726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CPNE6	NM_006032	exon13	c.C1125G	p.D375E	CCATGACTTTGCT	.	51	13	47	0	.	93	G	24545726	C	G	24545726	3	3	107	1	0	0	0	0	1	0	0	0	3816	564	20	4	1171	4	CPNE6	14	24545726	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	703258	24545726	82803814	85	13235											
HEATR5A	25938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	31819906	31819906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	HEATR5A	NM_015473	exon17	c.A2429G	p.Q810R	AAAAGCTGTTCCA	.	28	8	45	0	.	23	C	31819906	T	C	31819906	3	2	107	1	0	0	0	0	1	0	0	0	7031	1580	55	2	3791	2	HEATR5A	14	31819906	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	7274180	31819906	75529634	86	13236											
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65208636	65208637	+	Missense_Mutation	DNP	CC	CC	GT	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	.	.	.	.	p.P801V	GACCCACCTCCCA	.	46	9	59	0	.	.	GT	65208637	CC	GT	65208636	3	3	107	1	0	0	0	0	1	0	0	0	12070	507	18	4	2283	4	PLEKHG3	14	65208636	Missense_Mutation	DNP	CC	TCGA-DD-A73G-01A-22D-A32G-10	33388730	65208636	42140904	87	13237											
PAPOLA	10914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96986492	96986492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PAPOLA	NM_001252006	exon2	c.G109A	p.V37I	GACTGCGTACTTA	.	34	10	60	0	.	68	A	96986492	G	A	96986492	3	1	107	1	0	0	0	0	1	0	0	0	11429	1145	40	1	115	1	PAPOLA	14	96986492	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	31777856	96986492	10363048	88	13238											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102676045	102676045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	WDR20	NM_001242417	exon4	c.T1631C	p.L544P	CGCCCCTGTGTCC	.	72	16	111	0	.	90	C	102676045	T	C	102676045	3	2	107	1	0	0	0	0	1	0	0	0	17277	1580	55	2	1565	2	WDR20	14	102676045	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	5689553	102676045	4673495	89	13239											
TECPR2	9895	ucsc.edu;bcgsc.ca	37	14	102904370	102904370	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TECPR2	NM_001172631	exon10	c.C2406T	p.S802S	AGAAAGCTGGATG	.	33	4	63	0	.	92	T	102904370	C	T	102904370	2	4	107	1	0	0	0	0	0	0	0	1	15741	796	28	3		3	TECPR2	14	102904370	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	228325	102904370	4445170	90	13240											
CHAC1	79094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41247820	41247820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CHAC1	NM_024111	exon3	c.G643A	p.G215S	TTCTCCGGCCACA	.	32	16	26	0	.	90	A	41247820	G	A	41247820	3	1	107	1	0	0	0	0	1	0	0	0	3308	1116	39	1	653	1	CHAC1	15	41247820	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		41247820	61283572	91	13241											
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45400255	45400257	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DUOX2	NM_014080	exon13	c.1562_1564del	p.521_522del	TCCTGGTGTTCTC	.	67	22	54	0	.	95	-	45400257	TGT	-	45400255	7	5	107	1	0	1	0	1	0	0	0	0	4801	1696	59	0	3170	0	DUOX2	15	45400255	In_Frame_Del	DEL	TGT	TCGA-DD-A73G-01A-22D-A32G-10	4152435	45400255	57131137	92	13242											
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50884667	50884667	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TRPM7	NM_017672	exon26	c.G3765A	p.S1255S	AGCTTCCGACGCT	.	102	22	96	0	.	392	T	50884667	C	T	50884667	2	4	107	1	0	0	0	0	0	0	0	1	16588	639	23	1		1	TRPM7	15	50884667	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	5484412	50884667	51646725	93	13243											
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83328618	83328618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	AP3B2	NM_004644	exon25	c.G3077A	p.C1026Y	GTCCCACAAGGAA	.	77	18	74	0	.	94	T	83328618	C	T	83328618	3	4	107	1	0	0	0	0	1	0	0	0	745	478	17	3	179	3	AP3B2	15	83328618	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	32443951	83328618	19202774	94	13244											
UNC45A	55898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	91478859	91478859	+	Missense_Mutation	SNP	A	A	C	rs34963697		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	UNC45A	NM_018671	exon2	c.A137C	p.Q46P	ACACTCAGGCCCT	.	69	12	76	0	A|0.982;C|0.018	24	C	91478859	A	C	91478859	3	2	107	1	0	0	0	0	1	0	0	0	16985	188	7	5	143	5	UNC45A	15	91478859	Missense_Mutation	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	8150241	91478859	11052533	95	13245											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92981799	92981799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ST8SIA2	NM_006011	exon4	c.C507A	p.S169R	GAACAGCGGCTGT	.	65	22	51	0	.	90	A	92981799	C	A	92981799	3	1	107	1	0	0	0	0	1	0	0	0	15231	767	27	1	521	1	ST8SIA2	15	92981799	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	1502940	92981799	9549593	96	13246											
LRRC28	123355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	99828120	99828120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	LRRC28	NM_144598	exon5	c.C349T	p.R117X	CATCTTCGATTAG	.	118	19	101	0	.	90	T	99828120	C	T	99828120	4	4	107	1	0	0	0	0	0	1	0	0	8982	876	31	1	363	1	LRRC28	15	99828120	Nonsense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	6846321	99828120	2703272	97	13247											
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1575967	1575967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IFT140	NM_014714	exon21	c.C2689A	p.R897S	GCACGCGATCGTG	.	42	11	37	0	.	95	T	1575967	G	T	1575967	3	4	107	1	0	0	0	0	1	0	0	0	7556	1058	37	1	1743	1	IFT140	16	1575967	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		1575967	88778786	98	13248											
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11846585	11846585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZC3H7A	NM_014153	exon22	c.A2666C	p.E889A	TCGTCCTCGGTGT	.	54	12	69	0	.	94	G	11846585	T	G	11846585	3	3	107	1	0	0	0	0	1	0	0	0	17569	1551	54	5	257	5	ZC3H7A	16	11846585	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	10270618	11846585	78508168	99	13249											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15857692	15857692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MYH11	NM_001040114	exon11	c.G1111A	p.E371K	TTCTTTCCTTCTT	.	68	32	93	0	.	666	T	15857692	C	T	15857692	3	4	107	1	0	0	0	0	1	0	0	0	10031	864	30	3	4991	3	MYH11	16	15857692	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	4011107	15857692	74497061	100	13250											
ESRP2	80004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68266322	68266322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ESRP2	NM_024939	exon8	c.C906A	p.D302E	CGCTAGGTCCCGC	.	83	17	62	0	.	91	T	68266322	G	T	68266322	3	4	107	1	0	0	0	0	1	0	0	0	5259	1252	44	3	1279	3	ESRP2	16	68266322	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	52408630	68266322	22088431	101	13251											
FANCA	2175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89831471	89831471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FANCA	NM_000135	exon28	c.C2605G	p.Q869E	GGAACTGAAACTG	.	41	4	45	0	.	1130	C	89831471	G	C	89831471	3	2	107	1	0	0	0	0	1	0	0	0	5662	1299	45	4	1826	4	FANCA	16	89831471	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	21565149	89831471	523282	102	13252											
TRPV3	162514	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	3417893	3417893	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TRPV3	NM_001258205	exon17	c.C2272T	p.R758X	CTGTTCGTCTTAC	.	57	7	53	1	.	94	A	3417893	G	A	3417893	4	1	107	1	0	0	0	0	0	1	0	0	16594	1153	40	1	108	1	TRPV3	17	3417893	Nonsense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		3417893	77777317	103	13253											
KRT26	353288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38922867	38922867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KRT26	NM_181539	exon8	c.T1307C	p.I436T	TTGCCAATTTGAT	.	58	4	65	0	.	90	G	38922867	A	G	38922867	3	3	107	1	0	0	0	0	1	0	0	0	8463	101	4	2	103	2	KRT26	17	38922867	Missense_Mutation	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	35504974	38922867	42272343	104	13254											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45916030	45916030	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SCRN2	NM_138355	exon6	c.C805G	p.L269V	CTCTGAGGATGCC	.	49	13	67	0	.	91	C	45916030	G	C	45916030	3	2	107	1	0	0	0	0	1	0	0	0	13939	1000	35	4	502	4	SCRN2	17	45916030	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	6993163	45916030	35279180	105	13255											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72775252	72775252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF407	NM_017757	exon8	c.C5575T	p.P1859S	GCGCCGCCCCCTG	.	49	12	89	0	.	92	T	72775252	C	T	72775252	3	4	107	1	0	0	0	0	1	0	0	0	17884	739	26	3	5735	3	ZNF407	18	72775252	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		72775252	5301996	106	13256											
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	74622651	74622651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF236	NM_007345	exon16	c.C2683G	p.Q895E	CAGCCTCAGTTTC	.	52	4	72	0	.	94	G	74622651	C	G	74622651	3	3	107	1	0	0	0	0	1	0	0	0	17786	827	29	4	2745	4	ZNF236	18	74622651	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	1847399	74622651	3454597	107	13257											
TMPRSS9	360200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2399148	2399148	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TMPRSS9	NM_182973	exon3	c.C369T	p.I123I	CGGCATCTCCCTG	.	54	5	72	0	.	91	T	2399148	C	T	2399148	2	4	107	1	0	0	0	0	0	0	0	1	16250	903	32	3		3	TMPRSS9	19	2399148	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		2399148	56729835	108	13258											
PLVAP	83483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17476642	17476642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PLVAP	NM_031310	exon3	c.G632A	p.R211H	AGCTGGCGCTCTT	.	54	11	45	0	.	90	T	17476642	C	T	17476642	3	4	107	1	0	0	0	0	1	0	0	0	12116	768	27	1	712	1	PLVAP	19	17476642	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	15077494	17476642	41652341	109	13259											
KIRREL2	84063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36352846	36352846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KIRREL2	NM_199180	exon11	c.C1430A	p.S477Y	AGGAGTCTGACTT	.	126	16	91	0	.	93	A	36352846	C	A	36352846	3	1	107	1	0	0	0	0	1	0	0	0	8325	913	32	3	1472	3	KIRREL2	19	36352846	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	18876204	36352846	22776137	110	13260											
EML2	24139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46136177	46136177	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EML2	NM_001193268	exon9	c.A1055C	p.H352P	AGCACGTGTAAGG	.	137	19	81	0	.	154	G	46136177	T	G	46136177	3	3	107	1	0	0	0	0	1	0	0	0	5097	1696	59	5	1553	5	EML2	19	46136177	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	9783331	46136177	12992806	111	13261											
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35663859	35663859	+	Silent	SNP	G	G	A	rs150960998	byfrequency	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RBL1	NM_183404	exon15	c.C1956T	p.T652T	CCCTGCGGTAGGA	.	152	21	133	0	G|0.999;A|0.001	419	A	35663859	G	A	35663859	2	1	107	1	0	0	0	0	0	0	0	1	13109	1103	39	1		1	RBL1	20	35663859	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10		35663859	27361661	112	13262											
EMILIN3	90187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39990391	39990391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EMILIN3	NM_052846	exon4	c.C1818A	p.S606R	GTACTGGCTGACA	.	50	5	46	0	.	91	T	39990391	G	T	39990391	3	4	107	1	0	0	0	0	1	0	0	0	5095	1194	42	3	486	3	EMILIN3	20	39990391	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	4326532	39990391	23035129	113	13263											
KCNK15	60598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43378872	43378872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KCNK15	NM_022358	exon2	c.G386A	p.G129D	GCCTGGGCGAACG	.	41	7	47	0	.	90	A	43378872	G	A	43378872	3	1	107	1	0	0	0	0	1	0	0	0	8062	1203	42	3	392	3	KCNK15	20	43378872	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	3388481	43378872	19646648	114	13264											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	50782459	50782459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZFP64	NM_018197	exon3	c.G392A	p.R131H	TTGGTGCGTGACT	.	122	11	133	0	.	155	T	50782459	C	T	50782459	3	4	107	1	0	0	0	0	1	0	0	0	17649	768	27	1	2860	1	ZFP64	20	50782459	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	7403587	50782459	12243061	115	13265											
MCM3AP	8888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47666686	47666686	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MCM3AP	NM_003906	exon21	c.A4405T	p.M1469L	CTGCCATGTCCTC	.	111	31	137	0	.	291	A	47666686	T	A	47666686	3	1	107	1	0	0	0	0	1	0	0	0	9388	1464	51	4	1569	4	MCM3AP	21	47666686	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10		47666686	463209	116	13266											
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21066826	21066826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PI4KA	NM_058004	exon50	c.A5750G	p.Y1917C	TAGTCGTACATGC	.	302	72	300	0	.	454	C	21066826	T	C	21066826	3	2	107	1	0	0	0	0	1	0	0	0	11873	1638	57	2	582	2	PI4KA	22	21066826	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10		21066826	30237740	117	13267											
ZNF280A	129025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22869868	22869868	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF280A	NM_080740	exon2	c.T87C	p.D29D	ATCTGGATCTTCA	.	104	16	109	0	.	69	G	22869868	A	G	22869868	2	3	107	1	0	0	0	0	0	0	0	1	17811	330	12	2		2	ZNF280A	22	22869868	Silent	SNP	A	TCGA-DD-A73G-01A-22D-A32G-10	1803042	22869868	28434698	118	13268											
GGT1	2678	broad.mit.edu;mdanderson.org	37	22	25024304	25024304	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GGT1	NM_013430	exon15	c.G1512C	p.L504L	CCGGCTGCACAAC	.	85	15	68	0	.	90	C	25024304	G	C	25024304	2	2	107	1	0	0	0	0	0	0	0	1	6361	1306	46	4		4	GGT1	22	25024304	Silent	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	2154436	25024304	26280262	119	13269											
CRYBA4	1413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	27026303	27026303	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CRYBA4	NM_001886	exon6	c.444-1G>A	.	TTTCCAGCTGGGT	.	55	8	56	0	.	90	A	27026303	G	A	27026303	5	1	107	1	0	0	0	0	0	0	1	0	3909	985	34	3	461	3	CRYBA4	22	27026303	Splice_Site	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	2001999	27026303	24278263	120	13270											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50905841	50905841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SBF1	NM_002972	exon5	c.G475A	p.G159S	TCAGGCCCTCCAC	.	202	25	219	0	.	90	T	50905841	C	T	50905841	3	4	107	1	0	0	0	0	1	0	0	0	13858	623	22	3	5354	3	SBF1	22	50905841	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	23879538	50905841	398725	121	13271											
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10085608	10085608	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	WWC3	NM_015691	exon11	c.C1509T	p.A503A	ACACGCCTCGGCT	.	84	15	72	0	.	134	T	10085608	C	T	10085608	2	4	107	1	0	0	0	0	0	0	0	1	17410	668	24	3		3	WWC3	23	10085608	Silent	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10		10085608	145184952	122	13272											
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937742	12937742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TLR8	NM_138636	exon2	c.G583A	p.G195R	GAAGATGGAGTAT	.	237	36	218	0	.	629	A	12937742	G	A	12937742	3	1	107	1	0	0	0	0	1	0	0	0	15954	1349	47	3	589	3	TLR8	23	12937742	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	2852134	12937742	142332818	123	13273											
GLOD5	392465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48631828	48631828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GLOD5	NM_001080489	exon4	c.G460A	p.V154M	ATTGAGGTGTCCA	.	59	6	40	0	.	108	A	48631828	G	A	48631828	3	1	107	1	0	0	0	0	1	0	0	0	6451	1261	44	3	474	3	GLOD5	23	48631828	Missense_Mutation	SNP	G	TCGA-DD-A73G-01A-22D-A32G-10	35694086	48631828	106638732	124	13274											
POF1B	79983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84562234	84562234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	POF1B	NM_024921	exon11	c.G1099T	p.D367Y	GAGTGTCTTTGAA	.	195	31	176	1	.	130	A	84562234	C	A	84562234	3	1	107	1	0	0	0	0	1	0	0	0	12182	913	32	3	698	3	POF1B	23	84562234	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	35930406	84562234	70708326	125	13275											
GPR101	83550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	136112567	136112567	+	Missense_Mutation	SNP	C	C	T	rs143030995	byfrequency	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GPR101	NM_054021	exon1	c.G1267A	p.V423M	CCCACACGGCCAG	.	84	24	64	0	C|1.000;T|0.000	134	T	136112567	C	T	136112567	3	4	107	1	0	0	0	0	1	0	0	0	6622	536	19	1	262	1	GPR101	23	136112567	Missense_Mutation	SNP	C	TCGA-DD-A73G-01A-22D-A32G-10	51550333	136112567	19157993	126	13276											
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148798396	148798396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MAGEA11	NM_005366	exon5	c.T1250A	p.L417Q	CATCCCTGTATGA	.	147	22	123	0	.	132	A	148798396	T	A	148798396	3	1	107	1	0	0	0	0	1	0	0	0	9165	1580	55	4	1277	4	MAGEA11	23	148798396	Missense_Mutation	SNP	T	TCGA-DD-A73G-01A-22D-A32G-10	12685829	148798396	6472164	127	13277											
TAS1R3	83756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1268035	1268035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAS1R3	NM_152228	exon3	c.G1124T	p.C375F	GTGACTGCATCAC	.	52	13	57	0	.	22	T	1268035	G	T	1268035	3	4	108	1	0	0	0	0	1	0	0	0	15561	1319	46	3	1134	3	TAS1R3	1	1268035	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10		1268035	247982586	1	13278											
NADK	65220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1687958	1687958	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NADK	NM_001198994	exon7	c.C918T	p.F306F	GGTACAGAATTTC	.	166	66	138	1	.	44	A	1687958	G	A	1687958	2	1	108	1	0	0	0	0	0	0	0	1	10137	933	33	3		3	NADK	1	1687958	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	419923	1687958	247562663	2	13279											
GPR153	387509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6314095	6314095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GPR153	NM_207370	exon3	c.T469G	p.Y157D	GGGTGTAGAAGCG	.	177	37	207	0	.	514	C	6314095	A	C	6314095	3	2	108	1	0	0	0	0	1	0	0	0	6659	420	15	5	1376	5	GPR153	1	6314095	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	4626137	6314095	242936526	3	13280											
CA6	765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	9027785	9027785	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CA6	NM_001215	exon6	c.C639A	p.Y213X	CTACTACACCTAC	.	902	250	632	1	.	516	A	9027785	C	A	9027785	4	1	108	1	0	0	0	0	0	1	0	0	2521	489	17	3	661	3	CA6	1	9027785	Nonsense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	2713690	9027785	240222836	4	13281											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10408722	10408722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIF1B	NM_015074	exon35	c.A3742T	p.I1248F	CGAAGGATCACAG	.	368	115	253	0	.	93	T	10408722	A	T	10408722	3	4	108	1	0	0	0	0	1	0	0	0	8284	333	12	4	5365	4	KIF1B	1	10408722	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	1380937	10408722	238841899	5	13282											
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12313850	12313850	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	VPS13D	NM_015378	exon7	c.T636A	p.T212T	TTGCACTTTACTG	.	332	109	247	0	.	95	A	12313850	T	A	12313850	2	1	108	1	0	0	0	0	0	0	0	1	17189	1596	56	4		4	VPS13D	1	12313850	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1905128	12313850	236936771	6	13283											
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16578144	16578145	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FBXO42	NM_018994	exon10	c.1174_1175del	p.392_392del	GGAGACTGAGAGC	.	243	29	204	0	.	228	-	16578145	TG	-	16578144	7	5	108	1	0	1	0	1	0	0	0	0	5751	1580	55	0	982	0	FBXO42	1	16578144	Frame_Shift_Del	DEL	TG	TCGA-ED-A459-01A-11D-A25V-10	4264294	16578144	232672477	7	13284											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19480377	19480377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UBR4	NM_020765	exon45	c.A6515T	p.N2172I	GGGTGGTTCATCA	.	430	245	476	2	.	612	A	19480377	T	A	19480377	3	1	108	1	0	0	0	0	1	0	0	0	16901	1725	60	4	9284	4	UBR4	1	19480377	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2902233	19480377	229770244	8	13285											
AKR7L	246181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19596175	19596175	+	RNA	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AKR7L	NR_040288	exon5	c.508-2A>T	.	ATGCCCTGTAAGG	.	198	25	235	1	.	90	A	19596175	T	A	19596175	1	1	108	0	1	0	0	0	0	0	0	0	477	1594	55	4		4	AKR7L	1	19596175	RNA	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	115798	19596175	229654446	9	13286											
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23222044	23222044	+	Silent	SNP	T	T	A	rs141173528	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	EPHB2	NM_017449	exon8	c.T1671A	p.A557A	CATTGCTGTGGTT	.	113	18	181	0	T|1.000;C|0.000	1381	A	23222044	T	A	23222044	2	1	108	1	0	0	0	0	0	0	0	1	5175	1567	55	4		4	EPHB2	1	23222044	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	3625869	23222044	226028577	10	13287											
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46531740	46531740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PIK3R3	NM_001114172	exon6	c.A607G	p.T203A	TTCTAGTATATTC	.	116	14	75	0	.	1309	C	46531740	T	C	46531740	3	2	108	1	0	0	0	0	1	0	0	0	11920	1638	57	2	802	2	PIK3R3	1	46531740	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	23309696	46531740	202718881	11	13288											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	52943444	52943444	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZCCHC11	NM_015269	exon12	c.A1959T	p.V653V	TATCCGTACACAT	.	122	11	103	0	.	93	A	52943444	T	A	52943444	2	1	108	1	0	0	0	0	0	0	0	1	17577	1625	57	4		4	ZCCHC11	1	52943444	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6411704	52943444	196307177	12	13289											
LEPR	3953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	66081748	66081748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LEPR	NM_001003680	exon15	c.A2053T	p.T685S	CATCATACTTCCT	.	257	13	161	0	.	91	T	66081748	A	T	66081748	3	4	108	1	0	0	0	0	1	0	0	0	8728	391	14	4	2103	4	LEPR	1	66081748	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	13138304	66081748	183168873	13	13290											
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	90473063	90473063	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF326	NM_182976	exon5	c.A369T	p.G123G	TTTCGGAGGTAGA	.	228	19	151	0	.	91	T	90473063	A	T	90473063	2	4	108	1	0	0	0	0	0	0	0	1	17843	291	11	4		4	ZNF326	1	90473063	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	24391315	90473063	158777558	14	13291											
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100174554	100174554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FRRS1	NM_001013660	exon17	c.A1781T	p.Q594L	ATCACTTGGCCTG	.	120	48	77	0	.	91	A	100174554	T	A	100174554	3	1	108	1	0	0	0	0	1	0	0	0	6060	1812	63	4	103	4	FRRS1	1	100174554	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	9701491	100174554	149076067	15	13292											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110709579	110709579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC6A17	NM_001010898	exon2	c.C28A	p.R10S	ACCCAGCGTGAGC	.	366	163	296	0	.	92	A	110709579	C	A	110709579	3	1	108	1	0	0	0	0	1	0	0	0	14680	768	27	1	30	1	SLC6A17	1	110709579	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	10535025	110709579	138541042	16	13293											
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149904191	149904191	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MTMR11	NM_001145862	exon11	c.A1017T	p.S339S	CAGGGCTGAAAGC	.	162	13	99	0	.	90	A	149904191	T	A	149904191	2	1	108	1	0	0	0	0	0	0	0	1	9940	1567	55	4		4	MTMR11	1	149904191	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	39194612	149904191	99346430	17	13294											
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu	37	1	155030505	155030505	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ADAM15	NM_001261464	exon14	c.A1625T	p.Q542L	AGTGCCAGTCACT	.	69	5	80	0	.	651	T	155030505	A	T	155030505	3	4	108	1	0	0	0	0	1	0	0	0	237	188	7	4	1649	4	ADAM15	1	155030505	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	5126314	155030505	94220116	18	13295											
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155931649	155931649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ARHGEF2	NM_001162383	exon11	c.A1271T	p.E424V	AGCAGCTCCTTCA	.	312	35	231	0	.	228	A	155931649	T	A	155931649	3	1	108	1	0	0	0	0	1	0	0	0	903	1551	54	4	1737	4	ARHGEF2	1	155931649	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	901144	155931649	93318972	19	13296											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156230352	156230352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SMG5	NM_015327	exon15	c.A2173T	p.S725C	GAAGGCTAGAGGG	.	289	18	236	0	.	231	A	156230352	T	A	156230352	3	1	108	1	0	0	0	0	1	0	0	0	14796	1522	53	4	909	4	SMG5	1	156230352	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	298703	156230352	93020269	20	13297											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517532	158517532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OR6Y1	NM_001005189	exon1	c.A364T	p.I122F	CCATGATAGCAAG	.	414	39	255	0	.	69	A	158517532	T	A	158517532	3	1	108	1	0	0	0	0	1	0	0	0	11213	1406	49	4	615	4	OR6Y1	1	158517532	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2287180	158517532	90733089	21	13298											
NCSTN	23385	broad.mit.edu;bcgsc.ca	37	1	160325525	160325525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCSTN	NM_015331	exon12	c.A1433T	p.N478I	ACCTGAACTTTGT	.	293	13	215	1	.	658	T	160325525	A	T	160325525	3	4	108	1	0	0	0	0	1	0	0	0	10241	43	2	4	1479	4	NCSTN	1	160325525	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	1807993	160325525	88925096	22	13299											
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169521814	169521814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	F5	NM_000130	exon8	c.A1277T	p.Q426L	CTGACCTGGGCTC	.	185	14	124	0	.	157	A	169521814	T	A	169521814	3	1	108	1	0	0	0	0	1	0	0	0	5348	1580	55	4	5469	4	F5	1	169521814	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	9196289	169521814	79728807	23	13300											
GORAB	92344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170521319	170521319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GORAB	NM_152281	exon5	c.G901T	p.V301L	CTAGATGTAGAAG	.	197	19	175	1	.	90	T	170521319	G	T	170521319	3	4	108	1	0	0	0	0	1	0	0	0	6574	1377	48	3	923	3	GORAB	1	170521319	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	999505	170521319	78729302	24	13301											
TDRD5	163589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179562719	179562719	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TDRD5	NM_173533	exon3	c.G357A	p.R119R	TCATCGGCGAGTA	.	360	120	268	1	.	94	A	179562719	G	A	179562719	2	1	108	1	0	0	0	0	0	0	0	1	15730	1190	42	3		3	TDRD5	1	179562719	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	9041400	179562719	69687902	25	13302											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197108988	197108988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ASPM	NM_001206846	exon4	c.C1935A	p.F645L	AGTTCTGAATATT	.	44	17	47	0	.	615	T	197108988	G	T	197108988	3	4	108	1	0	0	0	0	1	0	0	0	1056	1281	45	3	8598	3	ASPM	1	197108988	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	17546269	197108988	52141633	26	13303											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	207679331	207679331	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CR1	NM_000573	exon2	c.T204A	p.Y68X	GACATATCTGAAC	.	445	33	332	0	.	93	A	207679331	T	A	207679331	4	1	108	1	0	0	0	0	0	1	0	0	3840	1442	50	4	210	4	CR1	1	207679331	Nonsense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	10570343	207679331	41571290	27	13304											
RD3	343035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211652560	211652560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RD3	NM_183059	exon3	c.C406A	p.H136N	GCTTGTGGGCCTC	.	44	11	61	0	.	91	T	211652560	G	T	211652560	3	4	108	1	0	0	0	0	1	0	0	0	13187	1348	47	3	185	3	RD3	1	211652560	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	3973229	211652560	37598061	28	13305											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215972280	215972280	+	Silent	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	USH2A	NM_206933	exon50	c.A9927G	p.G3309G	TTCTTCTCCACCA	.	410	168	284	0	.	115	C	215972280	T	C	215972280	2	2	108	1	0	0	0	0	0	0	0	1	17033	1538	54	2		2	USH2A	1	215972280	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	4319720	215972280	33278341	29	13306											
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236708178	236708178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LGALS8	NM_006499	exon11	c.T893C	p.I298T	GAAATATTACCTC	.	136	50	105	0	.	91	C	236708178	T	C	236708178	3	2	108	1	0	0	0	0	1	0	0	0	8747	1493	52	2	927	2	LGALS8	1	236708178	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	20735898	236708178	12542443	30	13307											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237868576	237868576	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RYR2	NM_001035	exon67	c.G9513A	p.L3171L	ATTTTTGGAAACT	.	155	47	133	0	.	158	A	237868576	G	A	237868576	2	1	108	1	0	0	0	0	0	0	0	1	13769	1339	47	3		3	RYR2	1	237868576	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	1160398	237868576	11382045	31	13308											
CEP170	9859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	243354349	243354349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CEP170	NM_001042405	exon8	c.A1079T	p.D360V	GGAACATCACTTT	.	257	16	218	0	.	93	A	243354349	T	A	243354349	3	1	108	1	0	0	0	0	1	0	0	0	3250	1435	50	4	3757	4	CEP170	1	243354349	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	5485773	243354349	5896272	32	13309											
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29416521	29416521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALK	NM_004304	exon29	c.A4432G	p.M1478V	ATGCCATATTCAC	.	231	74	261	0	.	3833	C	29416521	T	C	29416521	3	2	108	1	0	0	0	0	1	0	0	0	525	1406	49	2	434	2	ALK	2	29416521	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		29416521	213782852	33	13310											
SRD5A2	6716	broad.mit.edu;bcgsc.ca	37	2	31756443	31756443	+	RNA	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	.	TTACCTTGTGGAA	.	77	6	87	0	.	.	A	31756443	T	A	31756443	1	1	108	0	1	0	0	0	0	0	0	0	15138	1812	63	4		4	SRD5A2	2	31756443	RNA	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2339922	31756443	211442930	34	13311											
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	38804603	38804603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HNRPLL	NM_138394	exon7	c.G874C	p.G292R	ACTTACCATAGCC	.	298	86	273	0	.	91	G	38804603	C	G	38804603	3	3	108	1	0	0	0	0	1	0	0	0	7277	608	21	4	782	4	HNRPLL	2	38804603	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	7048160	38804603	204394770	35	13312											
TMEM127	55654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96919803	96919803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TMEM127	NM_001193304	exon4	c.A460G	p.I154V	CCAAGATGAGTTC	.	111	43	155	0	.	90	C	96919803	T	C	96919803	3	2	108	1	0	0	0	0	1	0	0	0	16037	1464	51	2	260	2	TMEM127	2	96919803	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	58115200	96919803	146279570	36	13313											
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102483701	102483701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAP4K4	NM_001242559	exon19	c.C2150G	p.S717C	CTCCATCTCAGCG	.	135	35	153	0	.	547	G	102483701	C	G	102483701	3	3	108	1	0	0	0	0	1	0	0	0	9262	913	32	4	2462	4	MAP4K4	2	102483701	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	5563898	102483701	140715672	37	13314											
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	128334177	128334177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYO7B	NM_001080527	exon8	c.A743T	p.E248V	CTCCCGAGGAGCG	.	53	12	52	0	.	47	T	128334177	A	T	128334177	3	4	108	1	0	0	0	0	1	0	0	0	10083	304	11	4	769	4	MYO7B	2	128334177	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	25850476	128334177	114865196	38	13315											
ZEB2	9839	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	145155986	145155986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZEB2	NM_014795	exon8	c.A2768T	p.Y923F	CCTGGGTATGGTC	.	323	99	337	2	.	297	A	145155986	T	A	145155986	3	1	108	1	0	0	0	0	1	0	0	0	17621	1638	57	4	888	4	ZEB2	2	145155986	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	16821809	145155986	98043387	39	13316											
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166245904	166245904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN2A	NM_001040143	exon26	c.A5588T	p.K1863M	TTACAAAGCGTGT	.	370	90	401	1	.	142	T	166245904	A	T	166245904	3	4	108	1	0	0	0	0	1	0	0	0	13916	72	3	4	5786	4	SCN2A	2	166245904	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	21089918	166245904	76953469	40	13317											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166897947	166897947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN1A	NM_001165963	exon13	c.T2209A	p.C737S	ACCAACAGGGTGG	.	64	9	43	0	.	147	T	166897947	A	T	166897947	3	4	108	1	0	0	0	0	1	0	0	0	13914	188	7	4	3876	4	SCN1A	2	166897947	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	652043	166897947	76301426	41	13318											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167163108	167163108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN9A	NM_002977	exon4	c.T379G	p.L127V	TGAATAAGGTAGC	.	76	31	105	0	.	181	C	167163108	A	C	167163108	3	2	108	1	0	0	0	0	1	0	0	0	13925	86	3	5	5650	5	SCN9A	2	167163108	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	265161	167163108	76036265	42	13319											
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	173344405	173344405	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITGA6	NM_000210	exon10	c.A1425T	p.T475T	CATCACAGTAACT	.	85	31	111	0	.	227	T	173344405	A	T	173344405	2	4	108	1	0	0	0	0	0	0	0	1	7880	175	7	4		4	ITGA6	2	173344405	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	6181297	173344405	69854968	43	13320											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179433349	179433349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TTN	NM_001267550	exon326	c.C77510T	p.P25837L	TTCAGTGGGAGAC	.	295	27	279	0	.	636	A	179433349	G	A	179433349	3	1	108	1	0	0	0	0	1	0	0	0	16732	1348	47	3	30617	3	TTN	2	179433349	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	6088944	179433349	63766024	44	13321											
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183799524	183799524	+	Missense_Mutation	SNP	T	T	C	rs144468405	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCKAP1	NM_205842	exon27	c.A2833G	p.I945V	CTTCAATTGAACT	.	113	35	122	0	T|0.999;C|0.001	92	C	183799524	T	C	183799524	3	2	108	1	0	0	0	0	1	0	0	0	10221	1493	52	2	595	2	NCKAP1	2	183799524	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	4366175	183799524	59399849	45	13322											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216261912	216261912	+	Silent	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FN1	NM_212476	exon23	c.A3552G	p.A1184A	AGGGTTTGCCTCC	.	72	15	82	0	.	584	C	216261912	T	C	216261912	2	2	108	1	0	0	0	0	0	0	0	1	5962	1799	63	2		2	FN1	2	216261912	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	32462388	216261912	26937461	46	13323											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219897276	219897276	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CCDC108	NM_194302	exon6	c.C561T	p.F187F	GAAGAAGAACTTG	.	200	55	252	0	.	94	A	219897276	G	A	219897276	2	1	108	1	0	0	0	0	0	0	0	1	2743	933	33	3		3	CCDC108	2	219897276	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	3635364	219897276	23302097	47	13324											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220333737	220333737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SPEG	NM_005876	exon12	c.T3458A	p.V1153E	TGTATGTAGAAGA	.	80	9	106	0	.	383	A	220333737	T	A	220333737	3	1	108	1	0	0	0	0	1	0	0	0	15035	1638	57	4	3516	4	SPEG	2	220333737	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	436461	220333737	22865636	48	13325											
DNER	92737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	230377533	230377533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNER	NM_139072	exon6	c.A1113T	p.Q371H	CCCATCTTGCTTT	.	265	15	282	1	.	524	A	230377533	T	A	230377533	3	1	108	1	0	0	0	0	1	0	0	0	4667	1606	56	4	1132	4	DNER	2	230377533	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	10043796	230377533	12821840	49	13326											
NCL	4691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232326345	232326345	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCL	NM_005381	exon3	c.A519T	p.A173A	CATCGCTGCTGGT	.	213	18	277	0	.	230	A	232326345	T	A	232326345	2	1	108	1	0	0	0	0	0	0	0	1	10226	1567	55	4		4	NCL	2	232326345	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1948812	232326345	10873028	50	13327											
BRPF1	7862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776024	9776024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BRPF1	NM_001003694	exon2	c.A200C	p.Q67P	GGCGCCAGTCACG	.	169	42	187	1	.	92	C	9776024	A	C	9776024	3	2	108	1	0	0	0	0	1	0	0	0	1520	188	7	5	202	5	BRPF1	3	9776024	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10		9776024	188246406	51	13328											
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	12195118	12195118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TIMP4	NM_003256	exon5	c.A572T	p.Q191L	TGAGCCTGGTAAC	.	485	35	382	0	.	226	A	12195118	T	A	12195118	3	1	108	1	0	0	0	0	1	0	0	0	15917	1580	55	4	106	4	TIMP4	3	12195118	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2419094	12195118	185827312	52	13329											
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12198366	12198366	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TIMP4	NM_003256	exon3	c.T306C	p.C102C	CACACCACAGAGG	.	177	53	135	0	.	226	G	12198366	A	G	12198366	2	3	108	1	0	0	0	0	0	0	0	1	15917	157	6	2		2	TIMP4	3	12198366	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	3248	12198366	185824064	53	13330											
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12856693	12856693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CAND2	NM_001162499	exon8	c.G1060T	p.A354S	CGCCGGGCAGCTG	.	194	76	260	0	.	72	T	12856693	G	T	12856693	3	4	108	1	0	0	0	0	1	0	0	0	2616	1203	42	3	1090	3	CAND2	3	12856693	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	658327	12856693	185165737	54	13331											
MRPS25	64432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15093970	15093970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MRPS25	NM_022497	exon4	c.T500A	p.L167Q	GCTTTCAGAGCGG	.	191	13	156	0	.	90	T	15093970	A	T	15093970	3	4	108	1	0	0	0	0	1	0	0	0	9836	188	7	4	25	4	MRPS25	3	15093970	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	2237277	15093970	182928460	55	13332											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38945427	38945427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN11A	NM_014139	exon12	c.A1771T	p.T591S	AGACAGTGTTGAT	.	361	119	372	1	.	99	A	38945427	T	A	38945427	3	1	108	1	0	0	0	0	1	0	0	0	13913	1696	59	4	3664	4	SCN11A	3	38945427	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	23851457	38945427	159077003	56	13333											
NKTR	4820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42674105	42674105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NKTR	NM_005385	exon9	c.A563G	p.K188R	AGAAAAAAAGGAA	.	86	25	70	0	.	93	G	42674105	A	G	42674105	3	3	108	1	0	0	0	0	1	0	0	0	10448	14	1	2	593	2	NKTR	3	42674105	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	3728678	42674105	155348325	57	13334											
NCKIPSD	51517	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48716129	48716129	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCKIPSD	NM_016453	exon12	c.A1833T	p.P611P	AGAGTGTGGTGGC	.	283	19	212	1	.	1082	A	48716129	T	A	48716129	2	1	108	1	0	0	0	0	0	0	0	1	10225	1683	59	4		4	NCKIPSD	3	48716129	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6042024	48716129	149306301	58	13335											
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52419373	52419373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNAH1	NM_015512	exon54	c.T8535A	p.D2845E	TGAGGATGTAGCC	.	200	18	187	1	.	67	A	52419373	T	A	52419373	3	1	108	1	0	0	0	0	1	0	0	0	4597	1461	51	4	8745	4	DNAH1	3	52419373	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	3703244	52419373	145603057	59	13336											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52489713	52489713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NISCH	NM_001276293	exon1	c.C56T	p.A19V	AGGAAGCGCGCGT	.	12	7	34	0	.	93	T	52489713	C	T	52489713	3	4	108	1	0	0	0	0	1	0	0	0	10432	768	27	1	58	1	NISCH	3	52489713	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	70340	52489713	145532717	60	13337											
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53857409	53857409	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CHDH	NM_018397	exon3	c.C627T	p.A209A	GTAGCCGGCCTGC	.	99	11	143	0	.	91	A	53857409	G	A	53857409	2	1	108	1	0	0	0	0	0	0	0	1	3333	1103	39	1		1	CHDH	3	53857409	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	1367696	53857409	144165021	61	13338											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	62518735	62518735	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CADPS	NM_183394	exon14	c.2104-2A>T	.	CAGCCCTATATAA	.	90	7	71	0	.	281	A	62518735	T	A	62518735	5	1	108	1	0	0	0	0	0	0	1	0	2570	1536	53	4	2104	4	CADPS	3	62518735	Splice_Site	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	8661326	62518735	135503695	62	13339											
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97868315	97868315	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OR5H14	NM_001005514	exon1	c.T86A	p.L29Q	TGTTCCTGGCATT	.	291	18	256	0	.	91	A	97868315	T	A	97868315	3	1	108	1	0	0	0	0	1	0	0	0	11160	1580	55	4	88	4	OR5H14	3	97868315	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	35349580	97868315	100154115	63	13340											
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101451370	101451370	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CEP97	NM_024548	exon6	c.G600A	p.L200L	ACAGTTGTCGATT	.	232	34	219	0	.	70	A	101451370	G	A	101451370	2	1	108	1	0	0	0	0	0	0	0	1	3263	1368	48	3		3	CEP97	3	101451370	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	3583055	101451370	96571060	64	13341											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124048793	124048793	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KALRN	NM_003947	exon8	c.A1364T	p.H455L	CAATCCACCACCA	.	262	79	245	0	.	738	T	124048793	A	T	124048793	3	4	108	1	0	0	0	0	1	0	0	0	7975	159	6	4	1394	4	KALRN	3	124048793	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	22597423	124048793	73973637	65	13342											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	124592297	124592297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITGB5	NM_002213	exon2	c.A152T	p.K51I	ACCTCTTTGGAGC	.	269	21	242	0	.	227	A	124592297	T	A	124592297	3	1	108	1	0	0	0	0	1	0	0	0	7898	1841	64	4	2303	4	ITGB5	3	124592297	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	543504	124592297	73430133	66	13343											
MGLL	11343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127441397	127441397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MGLL	NM_007283	exon4	c.A275G	p.Q92R	TCGCTCTGTCCGT	.	329	120	245	0	.	90	C	127441397	T	C	127441397	3	2	108	1	0	0	0	0	1	0	0	0	9556	1580	55	2	686	2	MGLL	3	127441397	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2849100	127441397	70581033	67	13344											
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	131418758	131418758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CPNE4	NM_130808	exon4	c.A427T	p.I143F	CCGTGATGGAAGA	.	133	9	97	0	.	92	A	131418758	T	A	131418758	3	1	108	1	0	0	0	0	1	0	0	0	3814	1464	51	4	1298	4	CPNE4	3	131418758	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	3977361	131418758	66603672	68	13345											
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147108887	147108887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZIC4	NM_001168378	exon4	c.A985T	p.S329C	GCGAGCTGGGGTG	.	80	7	172	0	.	91	A	147108887	T	A	147108887	3	1	108	1	0	0	0	0	1	0	0	0	17678	1580	55	4	177	4	ZIC4	3	147108887	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	15690129	147108887	50913543	69	13346											
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150398678	150398678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FAM194A	NM_152394	exon8	c.A922T	p.I308F	CATAGATATAGTC	.	91	5	94	0	.	93	A	150398678	T	A	150398678	3	1	108	1	0	0	0	0	1	0	0	0	5526	1406	49	4	1097	4	FAM194A	3	150398678	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	3289791	150398678	47623752	70	13347											
TFRC	7037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195785461	195785461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TFRC	NM_001128148	exon15	c.A1579T	p.N527Y	CCCAGTTGCTGTC	.	96	9	71	1	.	653	A	195785461	T	A	195785461	3	1	108	1	0	0	0	0	1	0	0	0	15809	1812	63	4	723	4	TFRC	3	195785461	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	45386783	195785461	2236969	71	13348											
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	197427705	197427705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIAA0226	NM_014687	exon7	c.A1040T	p.E347V	CTGCTCTCGGCAT	.	178	18	189	0	.	22	A	197427705	T	A	197427705	3	1	108	1	0	0	0	0	1	0	0	0	8162	1551	54	4	1983	4	KIAA0226	3	197427705	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1642244	197427705	594725	72	13349											
MAEA	10296	hgsc.bcm.edu;broad.mit.edu	37	4	1332275	1332275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAEA	NM_001017405	exon8	c.A965T	p.N322I	CCCTGAACAAGCT	.	102	7	112	0	.	91	T	1332275	A	T	1332275	3	4	108	1	0	0	0	0	1	0	0	0	9153	43	2	4	995	4	MAEA	4	1332275	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10		1332275	189822001	73	13350											
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15841652	15841652	+	Silent	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CD38	NM_001775	exon6	c.T663G	p.T221T	TAGCACTTTTGGG	.	106	13	96	0	.	92	G	15841652	T	G	15841652	2	3	108	1	0	0	0	0	0	0	0	1	3009	1596	56	5		5	CD38	4	15841652	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	14509377	15841652	175312624	74	13351											
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	23797512	23797512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PPARGC1A	NM_013261	exon13	c.A2330T	p.K777M	TTGCTCTTGGTGG	.	99	5	69	0	.	230	A	23797512	T	A	23797512	3	1	108	1	0	0	0	0	1	0	0	0	12300	1609	56	4	70	4	PPARGC1A	4	23797512	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	7955860	23797512	167356764	75	13352											
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69962549	69962549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UGT2B7	NM_001074	exon1	c.C311A	p.T104K	AAGATACATTTTG	.	66	28	67	0	.	92	A	69962549	C	A	69962549	3	1	108	1	0	0	0	0	1	0	0	0	16959	478	17	3	313	3	UGT2B7	4	69962549	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	46165037	69962549	121191727	76	13353											
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113353386	113353386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALPK1	NM_001102406	exon11	c.A2683G	p.N895D	AGCGGTAACATCC	.	145	75	224	0	.	337	G	113353386	A	G	113353386	3	3	108	1	0	0	0	0	1	0	0	0	544	362	13	2	2717	2	ALPK1	4	113353386	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	43390837	113353386	77800890	77	13354											
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113461976	113461976	+	Splice_Site	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	C4orf21	NM_018392	exon27	c.5910+1G>T	.	TACCAACCTTGTA	.	94	48	146	0	.	90	A	113461976	C	A	113461976	5	1	108	1	0	0	0	0	0	0	1	0	2254	521	18	3	415	3	C4orf21	4	113461976	Splice_Site	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	108590	113461976	77692300	78	13355											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	33648938	33648938	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ADAMTS12	NM_030955	exon9	c.C1468T	p.Q490X	CTTCCTGGCAGAA	.	219	80	179	0	.	232	A	33648938	G	A	33648938	4	1	108	1	0	0	0	0	0	1	0	0	257	1357	47	3	3380	3	ADAMTS12	5	33648938	Nonsense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10		33648938	147266322	79	13356											
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38490325	38490325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LIFR	NM_002310	exon15	c.T2134A	p.L712I	AGCGTAATAATTG	.	148	20	129	0	.	1173	T	38490325	A	T	38490325	3	4	108	1	0	0	0	0	1	0	0	0	8780	98	4	4	1183	4	LIFR	5	38490325	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	4841387	38490325	142424935	80	13357											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55259982	55259990	+	In_Frame_Del	DEL	ACAGGATCA	ACAGGATCA	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	ACAGGATCA	ACAGGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	IL6ST	NM_175767	exon6	c.642_650del	p.214_217del	TTATATACAGGAT	.	101	18	121	0	.	290	-	55259990	ACAGGATCA	-	55259982	7	5	108	1	0	1	0	1	0	0	0	0	7703	391	14	0	2154	0	IL6ST	5	55259982	In_Frame_Del	DEL	ACAGGATCA	TCGA-ED-A459-01A-11D-A25V-10	16769657	55259982	125655278	81	13358											
MAN2A1	4124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109026191	109026191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAN2A1	NM_002372	exon1	c.A73G	p.M25V	TACCTGATGCTGG	.	253	69	158	0	.	92	G	109026191	A	G	109026191	3	3	108	1	0	0	0	0	1	0	0	0	9214	333	12	2	75	2	MAN2A1	5	109026191	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	53766209	109026191	71889069	82	13359											
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	112889035	112889035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	YTHDC2	NM_022828	exon13	c.A1846T	p.I616F	TACAATATCTGCC	.	112	7	79	0	.	92	T	112889035	A	T	112889035	3	4	108	1	0	0	0	0	1	0	0	0	17494	449	16	4	1896	4	YTHDC2	5	112889035	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	3862844	112889035	68026225	83	13360											
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	134117757	134117757	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DDX46	NM_014829	exon8	c.A1026T	p.L342L	AGAACTAGCAAAA	.	202	13	177	0	.	227	T	134117757	A	T	134117757	2	4	108	1	0	0	0	0	0	0	0	1	4364	407	15	4		4	DDX46	5	134117757	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	21228722	134117757	46797503	84	13361											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136324224	136324224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SPOCK1	NM_004598	exon8	c.T815A	p.I272N	AGGTAGATGGCAT	.	395	137	349	0	.	91	T	136324224	A	T	136324224	3	4	108	1	0	0	0	0	1	0	0	0	15078	333	12	4	520	4	SPOCK1	5	136324224	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	2206467	136324224	44591036	85	13362											
PKD2L2	27039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137226191	137226191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PKD2L2	NM_001258448	exon2	c.A53G	p.H18R	AGTTGCATTACAG	.	195	61	194	0	.	90	G	137226191	A	G	137226191	3	3	108	1	0	0	0	0	1	0	0	0	11968	217	8	2	59	2	PKD2L2	5	137226191	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	901967	137226191	43689069	86	13363											
SLC4A9	83697	bcgsc.ca;mdanderson.org	37	5	139744102	139744102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC4A9	NM_001258428	exon11	c.T1615A	p.F539I	CTCATCTTCATCT	.	285	19	239	2	.	67	A	139744102	T	A	139744102	3	1	108	1	0	0	0	0	1	0	0	0	14660	1609	56	4	1585	4	SLC4A9	5	139744102	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2517911	139744102	41171158	87	13364											
PCDHGA5	56110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140744766	140744766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PCDHGA5	NM_032054	exon1	c.A869T	p.E290V	TTTCGGAGACTTT	.	68	9	74	0	.	35	T	140744766	A	T	140744766	3	4	108	1	0	0	0	0	1	0	0	0	11557	304	11	4	871	4	PCDHGA5	5	140744766	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	1000664	140744766	40170494	88	13365											
DPYSL3	1809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	146792244	146792244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DPYSL3	NM_001197294	exon6	c.A890T	p.E297V	AAGATCTCATAGA	.	112	10	114	0	.	91	A	146792244	T	A	146792244	3	1	108	1	0	0	0	0	1	0	0	0	4748	1551	54	4	1200	4	DPYSL3	5	146792244	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6047478	146792244	34123016	89	13366											
ATP10B	23120	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	160061560	160061560	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ATP10B	NM_025153	exon12	c.A1182T	p.Q394H	GAACACTTGCCCG	.	270	26	239	1	.	72	A	160061560	T	A	160061560	3	1	108	1	0	0	0	0	1	0	0	0	1117	1606	56	4	3263	4	ATP10B	5	160061560	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	13269316	160061560	20853700	90	13367											
BTN2A2	10385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26392974	26392974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BTN2A2	NM_006995	exon8	c.G1351T	p.D451Y	TTCCTGGACTATG	.	408	134	397	1	.	90	T	26392974	G	T	26392974	3	4	108	1	0	0	0	0	1	0	0	0	1561	1174	41	3	1377	3	BTN2A2	6	26392974	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10		26392974	144722093	91	13368											
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917142	30917142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DPCR1	NM_080870	exon2	c.C901T	p.P301S	CCATCCCCAGCAG	.	207	71	170	0	.	90	T	30917142	C	T	30917142	3	4	108	1	0	0	0	0	1	0	0	0	4712	623	22	3	907	3	DPCR1	6	30917142	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	4524168	30917142	140197925	92	13369											
TNF	7124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31544903	31544903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TNF	NM_000594	exon4	c.A291T	p.Q97H	CCCTCAAGCTGAG	.	64	4	65	0	.	1085	T	31544903	A	T	31544903	3	4	108	1	0	0	0	0	1	0	0	0	16268	69	3	4	305	4	TNF	6	31544903	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	627761	31544903	139570164	93	13370											
RGL2	5863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33263466	33263466	+	Missense_Mutation	SNP	T	T	A	rs201427428	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RGL2	NM_004761	exon7	c.A839T	p.H280L	TGAGAATGTCCTG	.	190	13	163	0	T|0.999;C|0.001	662	A	33263466	T	A	33263466	3	1	108	1	0	0	0	0	1	0	0	0	13277	1464	51	4	1542	4	RGL2	6	33263466	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1718563	33263466	137851601	94	13371											
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33403036	33403036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SYNGAP1	NM_006772	exon6	c.T617C	p.I206T	CCATTATCAAGCC	.	176	50	147	0	.	48	C	33403036	T	C	33403036	3	2	108	1	0	0	0	0	1	0	0	0	15444	1435	50	2	639	2	SYNGAP1	6	33403036	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	139570	33403036	137712031	95	13372											
TAF8	129685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	42036240	42036240	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAF8	NM_138572	exon7	c.A675T	p.T225T	CCTGACAGCTCTT	.	302	20	221	0	.	91	T	42036240	A	T	42036240	2	4	108	1	0	0	0	0	0	0	0	1	15531	175	7	4		4	TAF8	6	42036240	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	8633204	42036240	129078827	96	13373											
SLC35B2	347734	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223243	44223243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC35B2	NM_178148	exon4	c.G499T	p.A167S	GGCCAGCCACAAT	.	300	89	266	1	.	91	A	44223243	C	A	44223243	3	1	108	1	0	0	0	0	1	0	0	0	14576	739	26	3	803	3	SLC35B2	6	44223243	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	2187003	44223243	126891824	97	13374											
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44279864	44279864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AARS2	NM_020745	exon2	c.A380T	p.H127L	GTATGATGGGAAA	.	208	11	165	0	.	91	A	44279864	T	A	44279864	3	1	108	1	0	0	0	0	1	0	0	0	20	1464	51	4	2661	4	AARS2	6	44279864	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	56621	44279864	126835203	98	13375											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72967855	72967855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RIMS1	NM_014989	exon17	c.G2798T	p.S933I	GAGAAAGTAAATC	.	78	23	78	0	.	144	T	72967855	G	T	72967855	3	4	108	1	0	0	0	0	1	0	0	0	13367	1029	36	3	3027	3	RIMS1	6	72967855	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	28687991	72967855	98147212	99	13376											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72967911	72967911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RIMS1	NM_014989	exon17	c.C2854A	p.R952S	CGCTCACGTTCAG	.	121	30	122	0	.	144	A	72967911	C	A	72967911	3	1	108	1	0	0	0	0	1	0	0	0	13367	536	19	1	3083	1	RIMS1	6	72967911	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	56	72967911	98147156	100	13377											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90380710	90380710	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MDN1	NM_014611	exon83	c.T13884C	p.S4628S	TGCTAAAGACATG	.	175	50	188	0	.	100	G	90380710	A	G	90380710	2	3	108	1	0	0	0	0	0	0	0	1	9415	59	3	2		2	MDN1	6	90380710	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	17412799	90380710	80734357	101	13378											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90381952	90381952	+	Silent	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MDN1	NM_014611	exon82	c.G13761T	p.S4587S	ACCGTACGATTTC	.	87	21	77	0	.	100	A	90381952	C	A	90381952	2	1	108	1	0	0	0	0	0	0	0	1	9415	523	19	1		1	MDN1	6	90381952	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	1242	90381952	80733115	102	13379											
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102250278	102250278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GRIK2	NM_021956	exon8	c.G1168A	p.D390N	GATTTGGATGTGA	.	112	29	104	0	.	157	A	102250278	G	A	102250278	3	1	108	1	0	0	0	0	1	0	0	0	6774	1174	41	3	1198	3	GRIK2	6	102250278	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	11868326	102250278	68864789	103	13380											
CD164	8763	broad.mit.edu;bcgsc.ca	37	6	109690222	109690222	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CD164	NM_006016	exon7	c.428-2A>T	.	TGTACCTGTTAGA	.	167	14	226	1	.	90	A	109690222	T	A	109690222	5	1	108	1	0	0	0	0	0	0	1	0	2969	1594	55	4	222	4	CD164	6	109690222	Splice_Site	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	7439944	109690222	61424845	104	13381											
MICAL1	64780	broad.mit.edu;bcgsc.ca	37	6	109774931	109774931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MICAL1	NM_001159291	exon3	c.C376T	p.H126Y	AGAGGTGGAGCAC	.	77	6	115	1	.	154	A	109774931	G	A	109774931	3	1	108	1	0	0	0	0	1	0	0	0	9569	1348	47	3	2919	3	MICAL1	6	109774931	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	84709	109774931	61340136	105	13382											
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2740227	2740227	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AMZ1	NM_133463	exon2	c.T142A	p.Y48N	GAGGCCTACAACC	.	45	5	92	0	.	90	A	2740227	T	A	2740227	3	1	108	1	0	0	0	0	1	0	0	0	596	1522	53	4	144	4	AMZ1	7	2740227	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		2740227	156398436	106	13383											
NXPH1	30010	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8790840	8790840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NXPH1	NM_152745	exon3	c.A257T	p.D86V	AGCAAGACCTCTG	.	165	56	160	2	.	69	T	8790840	A	T	8790840	3	4	108	1	0	0	0	0	1	0	0	0	10790	275	10	4	263	4	NXPH1	7	8790840	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	6050613	8790840	150347823	107	13384											
HOXA6	3203	broad.mit.edu;ucsc.edu	37	7	27187129	27187129	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HOXA6	NM_024014	exon1	c.T240A	p.Y80X	ATCAGAATAGAAA	.	167	53	159	1	.	91	T	27187129	A	T	27187129	4	4	108	1	0	0	0	0	0	1	0	0	7296	108	4	4	469	4	HOXA6	7	27187129	Nonsense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	18396289	27187129	131951534	108	13385											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	44578770	44578770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NPC1L1	NM_001101648	exon2	c.A1226T	p.Q409L	ATCACCTGGTTGG	.	226	15	193	0	.	94	A	44578770	T	A	44578770	3	1	108	1	0	0	0	0	1	0	0	0	10571	1580	55	4	2929	4	NPC1L1	7	44578770	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	17391641	44578770	114559893	109	13386											
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50129226	50129226	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZPBP	NM_007009	exon2	c.A207T	p.P69P	AATACCTGGAAAA	.	103	10	97	0	.	90	A	50129226	T	A	50129226	2	1	108	1	0	0	0	0	0	0	0	1	18216	1594	55	4		4	ZPBP	7	50129226	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	5550456	50129226	109009437	110	13387											
FIS1	51024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	100884160	100884160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FIS1	NM_016068	exon3	c.A206T	p.E69V	CGCTGTTCCTCCT	.	462	31	350	0	.	44	A	100884160	T	A	100884160	3	1	108	1	0	0	0	0	1	0	0	0	5897	1783	62	4	264	4	FIS1	7	100884160	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	50754934	100884160	58254503	111	13388											
PRKAR2B	5577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	106781395	106781395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PRKAR2B	NM_002736	exon5	c.A584T	p.D195V	TAATTGATAGGTA	.	199	10	146	0	.	1083	T	106781395	A	T	106781395	3	4	108	1	0	0	0	0	1	0	0	0	12506	333	12	4	602	4	PRKAR2B	7	106781395	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	5897235	106781395	52357268	112	13389											
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	110763113	110763113	+	Silent	SNP	T	T	A	rs151294396	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRRN3	NM_018334	exon2	c.T285A	p.T95T	CCTTACTGGCCTG	.	64	4	33	0	T|1.000;C|0.000	154	A	110763113	T	A	110763113	2	1	108	1	0	0	0	0	0	0	0	1	9036	1567	55	4		4	LRRN3	7	110763113	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	3981718	110763113	48375550	113	13390											
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	133881819	133881819	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRGUK	NM_144648	exon13	c.A1507T	p.R503X	ATCGCAAGAGATG	.	186	15	112	0	.	227	T	133881819	A	T	133881819	4	4	108	1	0	0	0	0	0	1	0	0	8943	64	3	4	1557	4	LRGUK	7	133881819	Nonsense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	23118706	133881819	25256844	114	13391											
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	147675070	147675071	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	p.C791F	TGCGCTGCCAAGG	.	260	18	173	0	.	.	TT	147675071	GC	TT	147675070	3	4	108	1	0	0	0	0	1	0	0	0	3647	1319	46	3	2430	3	CNTNAP2	7	147675070	Missense_Mutation	DNP	GC	TCGA-ED-A459-01A-11D-A25V-10	13793251	147675070	11463593	115	13392											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151878935	151878935	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MLL3	NM_170606	exon36	c.A6010T	p.S2004C	GATCACTGGTTCC	.	248	66	120	0	.	1398	A	151878935	T	A	151878935	3	1	108	1	0	0	0	0	1	0	0	0	9622	1580	55	4	8821	4	MLL3	7	151878935	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	4203865	151878935	7259728	116	13393											
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156556491	156556491	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LMBR1	NM_022458	exon7	c.424-2A>T	.	ATTCCCTGAAAAA	.	159	7	90	0	.	90	A	156556491	T	A	156556491	5	1	108	1	0	0	0	0	0	0	1	0	8840	1594	55	4	1098	4	LMBR1	7	156556491	Splice_Site	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	4677556	156556491	2582172	117	13394											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30703652	30703652	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TEX15	NM_031271	exon1	c.A2882T	p.Q961L	CGTCCTTGGGATA	.	109	11	103	0	.	97	A	30703652	T	A	30703652	3	1	108	1	0	0	0	0	1	0	0	0	15776	1812	63	4	5503	4	TEX15	8	30703652	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		30703652	115660370	118	13395											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	55541215	55541215	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RP1	NM_006269	exon4	c.G4773A	p.W1591X	TGATTGGTCAGAC	.	63	34	55	0	.	102	A	55541215	G	A	55541215	4	1	108	1	0	0	0	0	0	1	0	0	13532	1270	44	3	4783	3	RP1	8	55541215	Nonsense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	24837563	55541215	90822807	119	13396											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	72958812	72958812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TRPA1	NM_007332	exon17	c.C1997A	p.P666Q	TCTAATGGACATT	.	39	4	37	0	.	230	T	72958812	G	T	72958812	3	4	108	1	0	0	0	0	1	0	0	0	16574	1348	47	3	1406	3	TRPA1	8	72958812	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	17417597	72958812	73405210	120	13397											
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	92352644	92352644	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC26A7	NM_134266	exon8	c.T891A	p.P297P	CTCACCTAGAGCT	.	217	13	152	0	.	92	A	92352644	T	A	92352644	2	1	108	1	0	0	0	0	0	0	0	1	14522	1509	53	4		4	SLC26A7	8	92352644	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	19393832	92352644	54011378	121	13398											
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110099893	110099893	+	Missense_Mutation	SNP	T	T	C	rs144587571	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TRHR	NM_003301	exon1	c.T152C	p.M51T	TTGTCATGAGAAC	.	237	101	183	0	T|1.000;G|0.000	620	C	110099893	T	C	110099893	3	2	108	1	0	0	0	0	1	0	0	0	16477	1464	51	2	154	2	TRHR	8	110099893	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	17747249	110099893	36264129	122	13399											
TAF1L	138474	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32630489	32630489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAF1L	NM_153809	exon1	c.A5089G	p.T1697A	TGGCAGTGGAAAT	.	215	36	281	0	.	870	C	32630489	T	C	32630489	3	2	108	1	0	0	0	0	1	0	0	0	15520	1696	59	2	395	2	TAF1L	9	32630489	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		32630489	108582942	123	13400											
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33466415	33466415	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NOL6	NM_022917	exon17	c.A2100T	p.P700P	AGTTGGTGGGAAC	.	169	72	186	0	.	92	A	33466415	T	A	33466415	2	1	108	1	0	0	0	0	0	0	0	1	10525	1683	59	4		4	NOL6	9	33466415	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	835926	33466415	107747016	124	13401											
PHF2	5253	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	96411461	96411461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PHF2	NM_005392	exon5	c.T569A	p.L190H	GGGTCCTCAACGT	.	194	15	236	1	.	91	A	96411461	T	A	96411461	3	1	108	1	0	0	0	0	1	0	0	0	11830	1551	54	4	587	4	PHF2	9	96411461	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	62945046	96411461	44801970	125	13402											
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	109734475	109734475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF462	NM_021224	exon8	c.T6617A	p.I2206N	AGAGCATCAGGCG	.	229	16	323	0	.	95	A	109734475	T	A	109734475	3	1	108	1	0	0	0	0	1	0	0	0	17923	1435	50	4	6643	4	ZNF462	9	109734475	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	13323014	109734475	31478956	126	13403											
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117844994	117844994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TNC	NM_002160	exon5	c.T2224A	p.W742R	TCTCCCAGGTTTC	.	146	61	198	0	.	517	T	117844994	A	T	117844994	3	4	108	1	0	0	0	0	1	0	0	0	16267	188	7	4	4477	4	TNC	9	117844994	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	8110519	117844994	23368437	127	13404											
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	124979380	124979380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LHX6	NM_014368	exon5	c.A649T	p.M217L	CAATCATGGTGTC	.	126	8	200	0	.	90	A	124979380	T	A	124979380	3	1	108	1	0	0	0	0	1	0	0	0	8775	1464	51	4	612	4	LHX6	9	124979380	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	7134386	124979380	16234051	128	13405											
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131287658	131287658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GLE1	NM_001499	exon7	c.A1085G	p.E362G	ACAAAGAGCCCCC	.	82	28	102	0	.	22	G	131287658	A	G	131287658	3	3	108	1	0	0	0	0	1	0	0	0	6435	304	11	2	1111	2	GLE1	9	131287658	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	6308278	131287658	9925773	129	13406											
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131860591	131860591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CRAT	NM_000755	exon10	c.C1265T	p.P422L	GACTTGGGGAAGT	.	179	28	202	0	.	90	A	131860591	G	A	131860591	3	1	108	1	0	0	0	0	1	0	0	0	3847	1232	43	3	635	3	CRAT	9	131860591	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	572933	131860591	9352840	130	13407											
PFKP	5214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3161001	3161001	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PFKP	NM_002627	exon15	c.G1470A	p.E490E	GGAAGAGATCGCC	.	285	61	194	2	.	253	A	3161001	G	A	3161001	2	1	108	1	0	0	0	0	0	0	0	1	11766	933	33	3		3	PFKP	10	3161001	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10		3161001	132373746	131	13408											
ITIH5	80760	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	7627889	7627889	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITIH5	NM_001001851	exon8	c.C1083A	p.Y361X	GTGAATGTACACT	.	410	79	305	1	.	92	T	7627889	G	T	7627889	4	4	108	1	0	0	0	0	0	1	0	0	7907	1372	48	3	1896	3	ITIH5	10	7627889	Nonsense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	4466888	7627889	127906858	132	13409											
CUBN	8029	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	17087018	17087018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CUBN	NM_001081	exon25	c.A3660T	p.L1220F	GTAATCTAAAGTG	.	188	11	163	1	.	166	A	17087018	T	A	17087018	3	1	108	1	0	0	0	0	1	0	0	0	4051	1519	53	4	7383	4	CUBN	10	17087018	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	9459129	17087018	118447729	133	13410											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	26462749	26462749	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYO3A	NM_017433	exon30	c.T3556A	p.Y1186N	AGAGTGTATCAGA	.	122	11	109	0	.	1007	A	26462749	T	A	26462749	3	1	108	1	0	0	0	0	1	0	0	0	10076	1638	57	4	3666	4	MYO3A	10	26462749	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	9375731	26462749	109071998	134	13411											
GAD2	2572	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26581901	26581901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GAD2	NM_000818	exon15	c.G1565A	p.R522K	AAGAGAGAATGAG	.	107	57	109	0	.	515	A	26581901	G	A	26581901	3	1	108	1	0	0	0	0	1	0	0	0	6180	942	33	3	1623	3	GAD2	10	26581901	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	119152	26581901	108952846	135	13412											
PDSS1	23590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27024491	27024491	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PDSS1	NM_014317	exon10	c.C1009T	p.L337L	CCTGTCCTGTTTG	.	331	85	199	0	.	90	T	27024491	C	T	27024491	2	4	108	1	0	0	0	0	0	0	0	1	11693	680	24	3		3	PDSS1	10	27024491	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	442590	27024491	108510256	136	13413											
OIT3	170392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74660156	74660156	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OIT3	NM_152635	exon3	c.A458T	p.E153V	GCGACGAGGACTG	.	120	35	113	0	.	70	T	74660156	A	T	74660156	3	4	108	1	0	0	0	0	1	0	0	0	10849	304	11	4	468	4	OIT3	10	74660156	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	47635665	74660156	60874591	137	13414											
ANXA7	310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75147463	75147463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ANXA7	NM_004034	exon8	c.A683T	p.K228M	GAGGTCTTAAATG	.	255	31	213	0	.	516	A	75147463	T	A	75147463	3	1	108	1	0	0	0	0	1	0	0	0	723	1609	56	4	811	4	ANXA7	10	75147463	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	487307	75147463	60387284	138	13415											
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	95116494	95116494	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYOF	NM_013451	exon30	c.A3232T	p.R1078X	TTTTTCTCCTCCA	.	213	14	218	0	.	93	A	95116494	T	A	95116494	4	1	108	1	0	0	0	0	0	1	0	0	10089	1559	54	4	3053	4	MYOF	10	95116494	Nonsense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	19969031	95116494	40418253	139	13416											
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	120914639	120914639	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SFXN4	NM_213649	exon11	c.A667T	p.K223X	TCCCCTTAATGGA	.	204	15	251	0	.	91	A	120914639	T	A	120914639	4	1	108	1	0	0	0	0	0	1	0	0	14197	1763	61	4	362	4	SFXN4	10	120914639	Nonsense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	25798145	120914639	14620108	140	13417											
UBQLNL	143630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	5537570	5537570	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UBQLNL	NM_145053	exon1	c.A102T	p.I34I	CTTCACTATCACT	.	138	10	110	0	.	136	A	5537570	T	A	5537570	2	1	108	1	0	0	0	0	0	0	0	1	16897	1512	53	4		4	UBQLNL	11	5537570	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		5537570	129468946	141	13418											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6291552	6291552	+	Missense_Mutation	SNP	G	G	A	rs200729292		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CCKBR	NM_176875	exon3	c.G638A	p.R213Q	GTGCGCGGGTCCG	.	97	48	113	0	.	574	A	6291552	G	A	6291552	3	1	108	1	0	0	0	0	1	0	0	0	2881	1116	39	1	648	1	CCKBR	11	6291552	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	753982	6291552	128714964	142	13419											
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	9182408	9182408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DENND5A	NM_001243254	exon12	c.A2288C	p.K763T	ATCCTCTTGGTCT	.	286	17	224	0	.	91	G	9182408	T	G	9182408	3	3	108	1	0	0	0	0	1	0	0	0	4436	1609	56	5	1623	5	DENND5A	11	9182408	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2890856	9182408	125824108	143	13420											
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	18057649	18057649	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TPH1	NM_004179	exon2	c.C158G	p.S53X	CTTTTTGATTTTC	.	58	13	51	0	.	90	C	18057649	G	C	18057649	4	2	108	1	0	0	0	0	0	1	0	0	16398	1294	45	4	1212	4	TPH1	11	18057649	Nonsense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	8875241	18057649	116948867	144	13421											
SAA1	6288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18291314	18291315	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SAA1	NM_199161	exon4	c.281_282insA	p.S94fs	AGGACTCGCTGGC	.	290	96	257	0	.	650	A	18291315	-	A	18291314	7	5	108	1	0	1	1	0	0	0	0	0	13798	893	31	0	291	0	SAA1	11	18291314	Frame_Shift_Ins	INS	-	TCGA-ED-A459-01A-11D-A25V-10	233665	18291314	116715202	145	13422											
PATL1	219988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59420493	59420493	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PATL1	NM_152716	exon11	c.1122-2A>T	.	GCTGACTGAAAAA	.	117	12	92	0	.	1	A	59420493	T	A	59420493	5	1	108	1	0	0	0	0	0	0	1	0	11475	1594	55	4	1232	4	PATL1	11	59420493	Splice_Site	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	41129179	59420493	75586023	146	13423											
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59857913	59857913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MS4A2	NM_000139	exon3	c.A291T	p.K97N	ATTTAAAGCAGGT	.	50	9	43	0	.	91	T	59857913	A	T	59857913	3	4	108	1	0	0	0	0	1	0	0	0	9860	69	3	4	301	4	MS4A2	11	59857913	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	437420	59857913	75148603	147	13424											
CD6	923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60777231	60777231	+	Silent	SNP	C	C	G	rs150066453	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CD6	NM_006725	exon5	c.C969G	p.S323S	CTTGTCCGGCAGG	.	127	39	120	0	C|1.000;T|0.000	227	G	60777231	C	G	60777231	2	3	108	1	0	0	0	0	0	0	0	1	3028	639	23	4		4	CD6	11	60777231	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	919318	60777231	74229285	148	13425											
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	61026645	61026645	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	VWCE	NM_152718	exon20	c.A2370T	p.S790S	CGAGGGTGATGCT	.	145	8	112	0	.	91	A	61026645	T	A	61026645	2	1	108	1	0	0	0	0	0	0	0	1	17242	1683	59	4		4	VWCE	11	61026645	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	249414	61026645	73979871	149	13426											
PLCB3	5331	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64023034	64023034	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PLCB3	NM_000932	exon7	c.A543T	p.A181A	CTCAGCAGACAAG	.	136	7	134	0	.	228	T	64023034	A	T	64023034	2	4	108	1	0	0	0	0	0	0	0	1	12029	175	7	4		4	PLCB3	11	64023034	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	2996389	64023034	70983482	150	13427											
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64366298	64366298	+	Silent	SNP	C	C	A	rs150255373	byfrequency;alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC22A12	NM_144585	exon6	c.C973A	p.R325R	GCCATGCGGGAGG	.	34	19	46	0	C|1.000;T|0.000	91	A	64366298	C	A	64366298	2	1	108	1	0	0	0	0	0	0	0	1	14443	759	27	1		1	SLC22A12	11	64366298	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	343264	64366298	70640218	151	13428											
PPP2R5B	5526	broad.mit.edu;mdanderson.org	37	11	64693301	64693301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PPP2R5B	NM_006244	exon2	c.C95T	p.S32F	GCTTCTCCCGCCG	.	21	7	31	0	.	660	T	64693301	C	T	64693301	3	4	108	1	0	0	0	0	1	0	0	0	12393	855	30	3	97	3	PPP2R5B	11	64693301	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	327003	64693301	70313215	152	13429											
FAU	2197	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64888161	64888161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FAU	NM_001997	exon5	c.A394T	p.N132Y	AAGAGTTGGCATT	.	137	7	118	0	.	90	A	64888161	T	A	64888161	3	1	108	1	0	0	0	0	1	0	0	0	5694	1812	63	4	11	4	FAU	11	64888161	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	194860	64888161	70118355	153	13430											
SPDYC	387778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64939933	64939933	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SPDYC	NM_001008778	exon5	c.C373T	p.L125L	GAGGACCTGGAGG	.	263	17	206	0	.	90	T	64939933	C	T	64939933	2	4	108	1	0	0	0	0	0	0	0	1	15027	680	24	3		3	SPDYC	11	64939933	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	51772	64939933	70066583	154	13431											
TSKU	25987	hgsc.bcm.edu;broad.mit.edu	37	11	76506948	76506950	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TSKU	NM_015516	exon2	c.288_290del	p.96_97del	CCTGCTCACCAGC	.	211	22	214	0	.	90	-	76506950	CAC	-	76506948	7	5	108	1	0	1	0	1	0	0	0	0	16624	813	29	0	290	0	TSKU	11	76506948	In_Frame_Del	DEL	CAC	TCGA-ED-A459-01A-11D-A25V-10	11567015	76506948	58499568	155	13432											
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93471382	93471382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAF1D	NM_024116	exon3	c.T352C	p.S118P	TTAGTGAGTATAT	.	22	8	31	0	.	90	G	93471382	A	G	93471382	3	3	108	1	0	0	0	0	1	0	0	0	15519	304	11	2	500	2	TAF1D	11	93471382	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	16964434	93471382	41535134	156	13433											
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101834387	101834387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIAA1377	NM_020802	exon6	c.C2621T	p.S874L	TACCATCACTGCC	.	183	55	127	0	.	136	T	101834387	C	T	101834387	3	4	108	1	0	0	0	0	1	0	0	0	8227	838	29	3	2643	3	KIAA1377	11	101834387	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	8363005	101834387	33172129	157	13434											
MMP12	4321	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102737122	102737122	+	RNA	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MMP12	.	.	.	.	CCATAAGGAAGAA	.	189	41	171	0	.	226	A	102737122	G	A	102737122	1	1	108	0	1	0	0	0	0	0	0	0	9651	987	35	3		3	MMP12	11	102737122	RNA	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	902735	102737122	32269394	158	13435											
ALG9	79796	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111680436	111680436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALG9	NM_024740	exon15	c.A1664T	p.E555V	TTTGGCTCCCGGG	.	134	11	117	1	.	91	A	111680436	T	A	111680436	3	1	108	1	0	0	0	0	1	0	0	0	524	1551	54	4	200	4	ALG9	11	111680436	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	8943314	111680436	23326080	159	13436											
DIXDC1	85458	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111864260	111864260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DIXDC1	.	.	.	.	AGCACCAGGCCAA	.	211	15	190	0	.	91	T	111864260	A	T	111864260	3	4	108	1	0	0	0	0	1	0	0	0	4541	188	7	4	1389	4	DIXDC1	11	111864260	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	183824	111864260	23142256	160	13437											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117869879	117869879	+	Silent	SNP	G	G	T	rs199604463	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	IL10RA	NM_001558	exon7	c.G1260T	p.S420S	TGGCTCGGCCTTG	.	126	42	130	0	G|0.999;A|0.000	91	T	117869879	G	T	117869879	2	4	108	1	0	0	0	0	0	0	0	1	7620	1103	39	1		1	IL10RA	11	117869879	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	6005619	117869879	17136637	161	13438											
ITFG2	55846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2927434	2927434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITFG2	NM_018463	exon4	c.A397T	p.S133C	CTGATCAGCGACA	.	144	54	142	0	.	90	T	2927434	A	T	2927434	3	4	108	1	0	0	0	0	1	0	0	0	7870	188	7	4	411	4	ITFG2	12	2927434	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10		2927434	130924461	162	13439											
PRH1	5554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11036772	11036772	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_006250	exon1	c.A45T	p.S15S	CTGAGCTGAGCTG	.	218	15	214	0	.	.	A	11036772	T	A	11036772	2	1	108	1	0	0	0	0	0	0	0	1	12482	1567	55	4		4	PRH1	12	11036772	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	8109338	11036772	122815123	163	13440											
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44913954	44913954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NELL2	NM_001145107	exon20	c.T2384A	p.I795N	GGGAGAATGCTGA	.	171	48	125	0	.	517	T	44913954	A	T	44913954	3	4	108	1	0	0	0	0	1	0	0	0	10334	101	4	4	224	4	NELL2	12	44913954	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	33877182	44913954	88937941	164	13441											
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52699941	52699941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KRT86	NM_002284	exon7	c.T1124A	p.L375Q	GTGCCCTGCAGAA	.	116	6	204	0	.	91	A	52699941	T	A	52699941	3	1	108	1	0	0	0	0	1	0	0	0	8500	1580	55	4	1150	4	KRT86	12	52699941	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	7785987	52699941	81151954	165	13442											
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56636966	56636966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ANKRD52	NM_173595	exon28	c.G3191T	p.R1064L	CCGGGCCGCTCCT	.	18	5	24	0	.	70	A	56636966	C	A	56636966	3	1	108	1	0	0	0	0	1	0	0	0	678	652	23	1	43	1	ANKRD52	12	56636966	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	3937025	56636966	77214929	166	13443											
NACA	4666	hgsc.bcm.edu;bcgsc.ca	37	12	57114439	57114439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NACA	NM_001113203	exon3	c.C875A	p.T292N	CCCGCAGTCTTTT	.	37	4	30	0	.	254	T	57114439	G	T	57114439	3	4	108	1	0	0	0	0	1	0	0	0	10133	1029	36	3	5389	3	NACA	12	57114439	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	477473	57114439	76737456	167	13444											
SDR9C7	121214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57324233	57324233	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SDR9C7	NM_148897	exon2	c.C337T	p.L113L	TGGGCAGGCCCAC	.	196	11	141	0	.	90	A	57324233	G	A	57324233	2	1	108	1	0	0	0	0	0	0	0	1	13974	991	35	3		3	SDR9C7	12	57324233	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	209794	57324233	76527662	168	13445											
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85279337	85279337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC6A15	NM_018057	exon4	c.T451C	p.C151R	AATAGCACACCTG	.	135	45	116	0	.	93	G	85279337	A	G	85279337	3	3	108	1	0	0	0	0	1	0	0	0	14678	159	6	2	1891	2	SLC6A15	12	85279337	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	27955104	85279337	48572558	169	13446											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	85449747	85449747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRRIQ1	NM_001079910	exon8	c.A1176T	p.Q392H	AAGCCAACAGCTA	.	45	5	27	0	.	95	T	85449747	A	T	85449747	3	4	108	1	0	0	0	0	1	0	0	0	9029	40	2	4	1202	4	LRRIQ1	12	85449747	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	170410	85449747	48402148	170	13447											
NTS	4922	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	86276027	86276027	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NTS	NM_006183	exon4	c.T387A	p.T129T	TGATACTGGAAAT	.	127	9	107	0	.	90	A	86276027	T	A	86276027	2	1	108	1	0	0	0	0	0	0	0	1	10709	1567	55	4		4	NTS	12	86276027	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	826280	86276027	47575868	171	13448											
KITLG	4254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88900157	88900157	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KITLG	NM_000899	exon9	c.715-2A>T	.	CTCTTCTGGAAAA	.	96	10	80	0	.	227	A	88900157	T	A	88900157	5	1	108	1	0	0	0	0	0	0	1	0	8330	1594	55	4	116	4	KITLG	12	88900157	Splice_Site	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2624130	88900157	44951738	172	13449											
NR2C1	7181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95452114	95452114	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NR2C1	NM_001032287	exon5	c.A516T	p.R172S	AATACATCTCTGT	.	51	5	41	0	.	187	A	95452114	T	A	95452114	3	1	108	1	0	0	0	0	1	0	0	0	10622	1432	50	4	1413	4	NR2C1	12	95452114	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6551957	95452114	38399781	173	13450											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104067722	104067722	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	STAB2	NM_017564	exon23	c.A2409T	p.I803I	CAGGATAGACAGC	.	141	13	150	0	.	104	T	104067722	A	T	104067722	2	4	108	1	0	0	0	0	0	0	0	1	15237	410	15	4		4	STAB2	12	104067722	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	8615608	104067722	29784173	174	13451											
ALKBH2	121642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109526088	109526088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALKBH2	NM_001001655	exon4	c.A709C	p.S237R	GAAGACTGTGGTA	.	63	23	67	0	.	227	G	109526088	T	G	109526088	3	3	108	1	0	0	0	0	1	0	0	0	527	1580	55	5	80	5	ALKBH2	12	109526088	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	5458366	109526088	24325807	175	13452											
OASL	8638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121458369	121458369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OASL	NM_003733	exon6	c.A1540T	p.S514C	ACTAACTGGCTGG	.	58	8	72	0	.	69	A	121458369	T	A	121458369	3	1	108	1	0	0	0	0	1	0	0	0	10802	1580	55	4	8	4	OASL	12	121458369	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	11932281	121458369	12393526	176	13453	75	2									
OASL	8638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121458371	121458371	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OASL	NM_003733	exon6	c.C1538G	p.A513G	TAACTGGCTGGAA	.	58	8	74	0	.	69	C	121458371	G	C	121458371	3	2	108	1	0	0	0	0	1	0	0	0	10802	1203	42	4	10	4	OASL	12	121458371	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	2	121458371	12393524	177	13454	75	2									
B3GNT4	79369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122691677	122691677	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	B3GNT4	NM_030765	exon3	c.T879A	p.A293A	CCAGGCTATCATG	.	95	11	142	0	.	91	A	122691677	T	A	122691677	2	1	108	1	0	0	0	0	0	0	0	1	1259	1509	53	4		4	B3GNT4	12	122691677	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1233306	122691677	11160218	178	13455											
MMP17	4326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132334436	132334436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MMP17	NM_016155	exon9	c.G1294A	p.D432N	GGCATCGACGCTG	.	188	26	311	1	.	226	A	132334436	G	A	132334436	3	1	108	1	0	0	0	0	1	0	0	0	9656	1058	37	1	1328	1	MMP17	12	132334436	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	9642759	132334436	1517459	179	13456											
ULK1	8408	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132396633	132396633	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ULK1	NM_003565	exon13	c.A1095G	p.P365P	GTTTCCAGGTCAG	.	75	37	204	2	.	758	G	132396633	A	G	132396633	2	3	108	1	0	0	0	0	0	0	0	1	16972	202	7	2		2	ULK1	12	132396633	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	62197	132396633	1455262	180	13457											
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	88330413	88330414	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	p.F924N	GCTGTCTTTGTAG	.	97	8	88	0	.	.	AA	88330414	TT	AA	88330413	3	1	108	1	0	0	0	0	1	0	0	0	14746	1609	56	4	2772	4	SLITRK5	13	88330413	Missense_Mutation	DNP	TT	TCGA-ED-A459-01A-11D-A25V-10		88330413	26839465	181	13458											
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113730402	113730402	+	Silent	SNP	G	G	A	rs141497667	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MCF2L	NM_001112732	exon12	c.G1431A	p.A477A	CGGTGCGGAAAAT	.	209	59	200	0	G|0.999;A|0.001	228	A	113730402	G	A	113730402	2	1	108	1	0	0	0	0	0	0	0	1	9379	1103	39	1		1	MCF2L	13	113730402	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	25399989	113730402	1439476	182	13459											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36154285	36154285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RALGAPA1	NM_194301	exon19	c.A2626G	p.N876D	GCTTGTTTAGAAT	.	80	37	104	0	.	138	C	36154285	T	C	36154285	3	2	108	1	0	0	0	0	1	0	0	0	13013	1841	64	2	3725	2	RALGAPA1	14	36154285	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		36154285	71195255	183	13460											
PLEKHG3	26030	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65208056	65208056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PLEKHG3	NM_015549	exon14	c.G1653T	p.E551D	TGCGGAGCGATTT	.	85	48	118	1	.	91	T	65208056	G	T	65208056	3	4	108	1	0	0	0	0	1	0	0	0	12070	962	34	3	1703	3	PLEKHG3	14	65208056	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	29053771	65208056	42141484	184	13461											
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	93714872	93714872	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BTBD7	NM_001002860	exon9	c.C2071T	p.R691X	GCACTCGAATCTG	.	89	25	93	0	.	91	A	93714872	G	A	93714872	4	1	108	1	0	0	0	0	0	1	0	0	1546	1066	37	1	1339	1	BTBD7	14	93714872	Nonsense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	28506816	93714872	13634668	185	13462											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	31325077	31325077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TRPM1	NM_001252020	exon21	c.A2818T	p.I940F	CTGTGATGTTCCA	.	236	10	253	0	.	94	A	31325077	T	A	31325077	3	1	108	1	0	0	0	0	1	0	0	0	16582	1464	51	4	2138	4	TRPM1	15	31325077	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		31325077	71206315	186	13463											
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38818572	38818572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RASGRP1	NM_001128602	exon3	c.T254A	p.L85Q	TGCAACAGTTGGT	.	99	25	85	0	.	697	T	38818572	A	T	38818572	3	4	108	1	0	0	0	0	1	0	0	0	13074	188	7	4	2199	4	RASGRP1	15	38818572	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	7493495	38818572	63712820	187	13464											
GPR176	11245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40094295	40094295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GPR176	NM_007223	exon3	c.T586A	p.W196R	TGCTCCAGACTTC	.	244	26	207	1	.	519	T	40094295	A	T	40094295	3	4	108	1	0	0	0	0	1	0	0	0	6673	188	7	4	965	4	GPR176	15	40094295	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	1275723	40094295	62437097	188	13465											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu	37	15	40917526	40917526	+	Silent	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CASC5	NM_170589	exon11	c.G5142T	p.P1714P	TCAGCCGGTCTCT	.	82	5	66	0	.	660	T	40917526	G	T	40917526	2	4	108	1	0	0	0	0	0	0	0	1	2663	1103	39	1		1	CASC5	15	40917526	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	823231	40917526	61613866	189	13466											
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	43571320	43571320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TGM7	NM_052955	exon11	c.A1834G	p.I612V	CCTCAATAGACAA	.	113	6	89	0	.	92	C	43571320	T	C	43571320	3	2	108	1	0	0	0	0	1	0	0	0	15832	1406	49	2	310	2	TGM7	15	43571320	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2653794	43571320	58960072	190	13467											
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	43819173	43819173	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAP1A	NM_002373	exon4	c.T5502A	p.T1834T	ACCCACTACTCCC	.	139	8	145	0	.	141	A	43819173	T	A	43819173	2	1	108	1	0	0	0	0	0	0	0	1	9227	1509	53	4		4	MAP1A	15	43819173	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	247853	43819173	58712219	191	13468											
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48058775	48058775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SEMA6D	NM_020858	exon16	c.C1648A	p.L550M	TGAAGGCTGTTAA	.	198	84	175	1	.	138	A	48058775	C	A	48058775	3	1	108	1	0	0	0	0	1	0	0	0	14042	811	28	3	1710	3	SEMA6D	15	48058775	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	4239602	48058775	54472617	192	13469											
USP8	9101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50782610	50782610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	USP8	NM_001128610	exon14	c.A2122G	p.R708G	CGGGATAGGGAAC	.	146	43	137	0	.	658	G	50782610	A	G	50782610	3	3	108	1	0	0	0	0	1	0	0	0	17086	411	15	2	2172	2	USP8	15	50782610	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	2723835	50782610	51748782	193	13470											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	51285722	51285722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AP4E1	NM_007347	exon17	c.A2246T	p.D749V	AAAAGGATCAATC	.	95	8	76	0	.	90	T	51285722	A	T	51285722	3	4	108	1	0	0	0	0	1	0	0	0	752	333	12	4	2312	4	AP4E1	15	51285722	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	503112	51285722	51245670	194	13471											
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75115899	75115899	+	Splice_Site	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LMAN1L	NM_021819	exon12	c.1200-1G>T	.	CGGTTAGGGATGC	.	51	7	81	0	.	90	T	75115899	G	T	75115899	5	4	108	1	0	0	0	0	0	0	1	0	8837	1014	35	3	1245	3	LMAN1L	15	75115899	Splice_Site	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	23830177	75115899	27415493	195	13472											
LINGO1	84894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77907675	77907675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LINGO1	NM_032808	exon2	c.A574C	p.S192R	CCAGGCTGTTGAG	.	138	57	133	0	.	24	G	77907675	T	G	77907675	3	3	108	1	0	0	0	0	1	0	0	0	8814	1580	55	5	1292	5	LINGO1	15	77907675	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2791776	77907675	24623717	196	13473											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85401062	85401062	+	Silent	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALPK3	NM_020778	exon6	c.G3699T	p.L1233L	CCTGCTGCTGAGC	.	24	7	32	0	.	337	T	85401062	G	T	85401062	2	4	108	1	0	0	0	0	0	0	0	1	546	1306	46	3		3	ALPK3	15	85401062	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	7493387	85401062	17130330	197	13474											
TPSD1	23430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1308140	1308140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TPSD1	NM_012217	exon4	c.A601T	p.T201S	TATCACACCGGCC	.	275	14	244	0	.	90	T	1308140	A	T	1308140	3	4	108	1	0	0	0	0	1	0	0	0	16422	159	6	4	615	4	TPSD1	16	1308140	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10		1308140	89046613	198	13475											
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1510832	1510832	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CLCN7	NM_001287	exon5	c.A469T	p.R157W	TGACCCTGTACTT	.	156	13	169	0	.	92	A	1510832	T	A	1510832	3	1	108	1	0	0	0	0	1	0	0	0	3468	1579	55	4	2032	4	CLCN7	16	1510832	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	202692	1510832	88843921	199	13476											
PGP	283871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2263817	2263817	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PGP	NM_001042371	exon2	c.A878T	p.Q293L	CTTTCCTGATTAT	.	273	15	201	0	.	23	A	2263817	T	A	2263817	3	1	108	1	0	0	0	0	1	0	0	0	11802	1580	55	4	91	4	PGP	16	2263817	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	752985	2263817	88090936	200	13477											
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22126671	22126671	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	VWA3A	NM_173615	exon9	c.C693T	p.L231L	CAGCCTCCAGGAA	.	173	36	116	0	.	1	T	22126671	C	T	22126671	2	4	108	1	0	0	0	0	0	0	0	1	17237	842	30	3		3	VWA3A	16	22126671	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	19862854	22126671	68228082	201	13478											
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30793613	30793613	+	Missense_Mutation	SNP	T	T	A	rs200655215	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001080417	exon3	c.A2036T	p.Q679L	TGATGCTGGAGGA	.	186	13	140	0	T|0.999;C|0.000	.	A	30793613	T	A	30793613	3	1	108	1	0	0	0	0	1	0	0	0	18050	1580	55	4	577	4	ZNF629	16	30793613	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	8666942	30793613	59561140	202	13479											
NIP7	51388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69375171	69375171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NIP7	NM_016101	exon4	c.A371G	p.N124S	CTGAAAATACTTC	.	136	73	208	0	.	153	G	69375171	A	G	69375171	3	3	108	1	0	0	0	0	1	0	0	0	10421	101	4	2	385	2	NIP7	16	69375171	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	38581558	69375171	20979582	203	13480											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A659G	p.Y220C	GGCTCATAGGGCA	.	158	74	212	0	.	70225	C	7578190	T	C	7578190	3	2	108	1	0	0	0	0	1	0	0	0	16378	1406	49	2	635	2	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		7578190	73617020	204	13481											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10317595	10317595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYH8	NM_002472	exon11	c.A922T	p.T308S	GGTTGGTGGTGAT	.	257	26	332	0	.	101	A	10317595	T	A	10317595	3	1	108	1	0	0	0	0	1	0	0	0	10041	1696	59	4	5011	4	MYH8	17	10317595	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	2739405	10317595	70877615	205	13482											
COPS3	8533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17179373	17179373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	COPS3	NM_003653	exon2	c.A161T	p.H54L	AAGGAGTGTTCTT	.	126	14	164	0	.	226	A	17179373	T	A	17179373	3	1	108	1	0	0	0	0	1	0	0	0	3734	1696	59	4	1154	4	COPS3	17	17179373	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6861778	17179373	64015837	206	13483											
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	17	27017195	27017196	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SUPT6H	NM_003170	exon26	c.3438_3439del	p.1146_1147del	CAACACAGAGGAG	.	277	80	269	0	.	93	-	27017196	AG	-	27017195	7	5	108	1	0	1	0	1	0	0	0	0	15397	175	7	0	3536	0	SUPT6H	17	27017195	Frame_Shift_Del	DEL	AG	TCGA-ED-A459-01A-11D-A25V-10	9837822	27017195	54178015	207	13484											
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38711882	38711882	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CCR7	NM_001838	exon3	c.T249C	p.Y83Y	ATAGATATAGGTC	.	173	23	150	0	.	659	G	38711882	A	G	38711882	2	3	108	1	0	0	0	0	0	0	0	1	2946	456	16	2		2	CCR7	17	38711882	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	11694687	38711882	42483328	208	13485											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39135187	39135187	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_182497	exon8	c.G1065A	p.E355E	CTGGTTCTCCAGG	.	152	49	176	0	.	.	T	39135187	C	T	39135187	2	4	108	1	0	0	0	0	0	0	0	1	8478	912	32	3		3	KRT40	17	39135187	Silent	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	423305	39135187	42060023	209	13486											
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521676	39521676	+	Missense_Mutation	SNP	G	G	A	rs141441300	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KRT33B	NM_002279	exon4	c.C718T	p.R240C	CCCTGCGGTTGGT	.	279	88	292	0	G|1.000;A|0.000	90	A	39521676	G	A	39521676	3	1	108	1	0	0	0	0	1	0	0	0	8470	1116	39	1	512	1	KRT33B	17	39521676	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	386489	39521676	41673534	210	13487											
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40474482	40474482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	STAT3	NM_003150	exon21	c.A1919T	p.Y640F	TTTGTGTATGGTT	.	390	22	343	0	.	1271	A	40474482	T	A	40474482	3	1	108	1	0	0	0	0	1	0	0	0	15265	1638	57	4	409	4	STAT3	17	40474482	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	952806	40474482	40720728	211	13488											
SLC25A39	51629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42398495	42398495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC25A39	NM_001143780	exon8	c.G622A	p.A208T	CCTGAGCCACTGC	.	86	23	119	0	.	91	T	42398495	C	T	42398495	3	4	108	1	0	0	0	0	1	0	0	0	14503	739	26	3	477	3	SLC25A39	17	42398495	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	1924013	42398495	38796715	212	13489											
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48668930	48668930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CACNA1G	NM_001256360	exon11	c.A2588G	p.D863G	CCATGGACAACGT	.	99	32	128	0	.	67	G	48668930	A	G	48668930	3	3	108	1	0	0	0	0	1	0	0	0	2544	275	10	2	2630	2	CACNA1G	17	48668930	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	6270435	48668930	32526280	213	13490											
STXBP4	252983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	53077023	53077023	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	STXBP4	NM_178509	exon6	c.A318T	p.I106I	ATTCATAAGACAA	.	144	8	125	0	.	91	T	53077023	A	T	53077023	2	4	108	1	0	0	0	0	0	0	0	1	15354	352	13	4		4	STXBP4	17	53077023	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	4408093	53077023	28118187	214	13491											
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56435407	56435407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RNF43	NM_017763	exon9	c.A1730T	p.Q577L	CTGGACTGGGGGA	.	121	14	125	0	.	92	A	56435407	T	A	56435407	3	1	108	1	0	0	0	0	1	0	0	0	13495	1580	55	4	629	4	RNF43	17	56435407	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	3358384	56435407	24759803	215	13492											
BCAS3	54828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59155891	59155891	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BCAS3	NM_001099432	exon22	c.2372+1G>A	.	TCTCAGGTAGGAA	.	154	44	138	0	.	495	A	59155891	G	A	59155891	5	1	108	1	0	0	0	0	0	0	1	0	1352	1275	44	3	2455	3	BCAS3	17	59155891	Splice_Site	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	2720484	59155891	22039319	216	13493											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65920668	65920668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BPTF	NM_004459	exon17	c.A6092G	p.E2031G	GAGTGGAGAAAGA	.	293	105	261	0	.	94	G	65920668	A	G	65920668	3	3	108	1	0	0	0	0	1	0	0	0	1495	304	11	2	6158	2	BPTF	17	65920668	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	6764777	65920668	15274542	217	13494											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72349367	72349367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIF19	NM_153209	exon16	c.G2147T	p.G716V	GTACTGGGGCCTG	.	192	88	201	0	.	90	T	72349367	G	T	72349367	3	4	108	1	0	0	0	0	1	0	0	0	8282	1232	43	3	2209	3	KIF19	17	72349367	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	6428699	72349367	8845843	218	13495											
SLC25A10	1468	hgsc.bcm.edu;bcgsc.ca	37	17	79682550	79682550	+	Missense_Mutation	SNP	C	C	T	rs199824906		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC25A10	NM_001270888	exon3	c.C256T	p.R86W	ACTGTGCGGGACC	.	88	4	141	0	C|0.999;T|0.000	90	T	79682550	C	T	79682550	3	4	108	1	0	0	0	0	1	0	0	0	14472	759	27	1	266	1	SLC25A10	17	79682550	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	7333183	79682550	1512660	219	13496											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7013887	7013887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LAMA1	NM_005559	exon23	c.C3290A	p.T1097K	CCCGACGTCCCCC	.	196	88	259	0	.	149	T	7013887	G	T	7013887	3	4	108	1	0	0	0	0	1	0	0	0	8605	1145	40	1	6101	1	LAMA1	18	7013887	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10		7013887	71063361	220	13497											
MATK	4145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3779601	3779601	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MATK	NM_002378	exon10	c.A860T	p.E287V	AGGTTCTCGTGTT	.	34	7	55	0	.	521	A	3779601	T	A	3779601	3	1	108	1	0	0	0	0	1	0	0	0	9332	1551	54	4	686	4	MATK	19	3779601	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10		3779601	55349382	221	13498											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10251564	10251564	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNMT1	NM_001130823	exon32	c.A3416C	p.Q1139P	CAGGCTTGGGACT	.	65	27	60	0	.	660	G	10251564	T	G	10251564	3	3	108	1	0	0	0	0	1	0	0	0	4675	1812	63	5	1522	5	DNMT1	19	10251564	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6471963	10251564	48877419	222	13499											
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10906053	10906053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNM2	NM_001005361	exon9	c.G1134C	p.E378D	GATGGAGTTTGAC	.	131	42	110	0	.	471	C	10906053	G	C	10906053	3	2	108	1	0	0	0	0	1	0	0	0	4672	1020	36	4	1168	4	DNM2	19	10906053	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	654489	10906053	48222930	223	13500											
UPF1	5976	hgsc.bcm.edu;broad.mit.edu	37	19	18967008	18967008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UPF1	NM_002911	exon13	c.C1723T	p.Q575X	GAGCTGCAGAAGC	.	130	8	120	0	.	91	T	18967008	C	T	18967008	4	4	108	1	0	0	0	0	0	1	0	0	17000	711	25	3	1773	3	UPF1	19	18967008	Nonsense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	8060955	18967008	40161975	224	13501											
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19656087	19656087	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CILP2	NM_153221	exon8	c.G2733A	p.V911V	CAACGTGGTCCCC	.	115	26	142	0	.	91	A	19656087	G	A	19656087	2	1	108	1	0	0	0	0	0	0	0	1	3430	1335	47	3		3	CILP2	19	19656087	Silent	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	689079	19656087	39472896	225	13502											
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21132284	21132284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF85	NM_001256171	exon5	c.G1054T	p.A352S	GGCAAAGCCTTTA	.	18	12	32	0	.	514	T	21132284	G	T	21132284	3	4	108	1	0	0	0	0	1	0	0	0	18190	971	34	3	978	3	ZNF85	19	21132284	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	1476197	21132284	37996699	226	13503											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	31768845	31768845	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TSHZ3	NM_020856	exon2	c.T1854A	p.T618T	TTTCTCAGTGACC	.	192	14	169	0	.	232	T	31768845	A	T	31768845	2	4	108	1	0	0	0	0	0	0	0	1	16622	175	7	4		4	TSHZ3	19	31768845	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	10636561	31768845	27360138	227	13504											
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	37677114	37677114	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF585B	NM_152279	exon5	c.A1325T	p.H442L	CCACAGTGACCAC	.	128	11	139	0	.	91	A	37677114	T	A	37677114	3	1	108	1	0	0	0	0	1	0	0	0	18015	1696	59	4	988	4	ZNF585B	19	37677114	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	5908269	37677114	21451869	228	13505											
KCNK6	9424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38817261	38817261	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KCNK6	NM_004823	exon2	c.T351A	p.D117E	GACTGATGCGGGC	.	58	4	56	0	.	91	A	38817261	T	A	38817261	3	1	108	1	0	0	0	0	1	0	0	0	8070	1461	51	4	357	4	KCNK6	19	38817261	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1140147	38817261	20311722	229	13506											
LRFN1	57622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39805513	39805513	+	Missense_Mutation	SNP	G	G	A	rs201576239		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRFN1	NM_020862	exon1	c.C464T	p.A155V	AAGGCCGCCGACT	.	72	5	87	0	.	70	A	39805513	G	A	39805513	3	1	108	1	0	0	0	0	1	0	0	0	8937	1087	38	1	1859	1	LRFN1	19	39805513	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	988252	39805513	19323470	230	13507											
ALDH16A1	126133	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49972222	49972222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALDH16A1	NM_153329	exon16	c.G2226T	p.M742I	GGCCATGTGGTAT	.	106	31	126	1	.	91	T	49972222	G	T	49972222	3	4	108	1	0	0	0	0	1	0	0	0	488	1377	48	3	2288	3	ALDH16A1	19	49972222	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	10166709	49972222	9156761	231	13508											
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52448896	52448896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF613	NM_001031721	exon6	c.A1760T	p.N587I	TAACTAACAGTGC	.	226	80	165	0	.	91	T	52448896	A	T	52448896	3	4	108	1	0	0	0	0	1	0	0	0	18035	43	2	4	1774	4	ZNF613	19	52448896	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	2476674	52448896	6680087	232	13509											
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54962528	54962528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LENG8	NM_052925	exon2	c.G7A	p.A3T	ATGGCGGCCAACG	.	188	65	179	0	.	91	A	54962528	G	A	54962528	3	1	108	1	0	0	0	0	1	0	0	0	8724	1203	42	3	9	3	LENG8	19	54962528	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	2513632	54962528	4166455	233	13510											
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	57889239	57889239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF547	NM_173631	exon4	c.A895T	p.S299C	GGTTGCAGTGAAT	.	130	9	117	0	.	91	T	57889239	A	T	57889239	3	4	108	1	0	0	0	0	1	0	0	0	17976	188	7	4	905	4	ZNF547	19	57889239	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	2926711	57889239	1239744	234	13511											
ZNF773	374928	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58018242	58018242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF773	NM_198542	exon4	c.C779A	p.A260D	GTAATGCTGACCT	.	155	10	125	1	.	91	A	58018242	C	A	58018242	3	1	108	1	0	0	0	0	1	0	0	0	18143	797	28	3	793	3	ZNF773	19	58018242	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	129003	58018242	1110741	235	13512											
ZNF211	10520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58152706	58152706	+	Silent	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF211	NM_001265597	exon5	c.T1047G	p.P349P	AAGGCCTTATGAA	.	77	23	94	0	.	92	G	58152706	T	G	58152706	2	3	108	1	0	0	0	0	0	0	0	1	17764	1596	56	5		5	ZNF211	19	58152706	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	134464	58152706	976277	236	13513											
TGM6	343641	broad.mit.edu;bcgsc.ca	37	20	2397908	2397908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TGM6	NM_198994	exon10	c.A1367T	p.K456M	ACAGCAAGGCGGT	.	119	6	118	1	.	94	T	2397908	A	T	2397908	3	4	108	1	0	0	0	0	1	0	0	0	15831	72	3	4	1405	4	TGM6	20	2397908	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10		2397908	60627612	237	13514											
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30432787	30432787	+	Missense_Mutation	SNP	G	G	A	rs149428291	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FOXS1	NM_004118	exon1	c.C559T	p.R187W	GTGGCCGAGGCCT	.	48	13	73	0	G|0.999;A|0.001	69	A	30432787	G	A	30432787	3	1	108	1	0	0	0	0	1	0	0	0	6035	1057	37	1	437	1	FOXS1	20	30432787	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	28034879	30432787	32592733	238	13515											
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33582028	33582028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYH7B	NM_020884	exon27	c.A2650G	p.K884E	TTTTTCAAGATGA	.	320	116	285	0	.	136	G	33582028	A	G	33582028	3	3	108	1	0	0	0	0	1	0	0	0	10040	131	5	2	2748	2	MYH7B	20	33582028	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	3149241	33582028	29443492	239	13516											
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	54961584	54961584	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AURKA	NM_198437	exon3	c.A48T	p.T16T	TGGAGCTGTAGCC	.	126	7	99	0	.	1601	A	54961584	T	A	54961584	2	1	108	1	0	0	0	0	0	0	0	1	1221	1567	55	4		4	AURKA	20	54961584	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	21379556	54961584	8063936	240	13517											
DNAJC5	80331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62562355	62562355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNAJC5	NM_025219	exon4	c.A473T	p.Q158L	AGGCACAGCTGCA	.	143	10	155	0	.	227	T	62562355	A	T	62562355	3	4	108	1	0	0	0	0	1	0	0	0	4650	188	7	4	483	4	DNAJC5	20	62562355	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	7600771	62562355	463165	241	13518											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41384983	41384984	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	p.A2006L	GATTTTGCGTAAG	.	134	26	172	0	.	.	AG	41384984	GC	AG	41384983	3	1	108	1	0	0	0	0	1	0	0	0	4768	1319	46	3	25	3	DSCAM	21	41384983	Missense_Mutation	DNP	GC	TCGA-ED-A459-01A-11D-A25V-10		41384983	6744912	242	13519											
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29885288	29885292	+	Frame_Shift_Del	DEL	AGCAA	AGCAA	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	AGCAA	AGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NEFH	NM_021076	exon4	c.1659_1663del	p.553_555del	GTCTCCAGCAAAG	.	222	66	326	0	.	90	-	29885292	AGCAA	-	29885288	7	5	108	1	0	1	0	1	0	0	0	0	10314	175	7	0	1673	0	NEFH	22	29885288	Frame_Shift_Del	DEL	AGCAA	TCGA-ED-A459-01A-11D-A25V-10		29885288	21419278	243	13520											
HMOX1	3162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	35789564	35789564	+	Silent	SNP	A	A	T	rs140740892	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HMOX1	NM_002133	exon5	c.A840T	p.T280T	GGCGACAGTTGCT	.	141	8	179	0	A|0.997;G|0.003	91	T	35789564	A	T	35789564	2	4	108	1	0	0	0	0	0	0	0	1	7243	175	7	4		4	HMOX1	22	35789564	Silent	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	5904276	35789564	15515002	244	13521											
EIF3D	8664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36919311	36919311	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	EIF3D	NM_003753	exon6	c.A410T	p.Q137L	TTTTTCTGCAGTC	.	115	9	102	0	.	69	A	36919311	T	A	36919311	3	1	108	1	0	0	0	0	1	0	0	0	5014	1580	55	4	1276	4	EIF3D	22	36919311	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	1129747	36919311	14385255	245	13522											
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41911430	41911430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ACO2	NM_001098	exon5	c.A575T	p.D192V	GCACTGACTCCCA	.	158	16	133	0	.	290	T	41911430	A	T	41911430	3	4	108	1	0	0	0	0	1	0	0	0	147	275	10	4	593	4	ACO2	22	41911430	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	4992119	41911430	9393136	246	13523											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42099396	42099396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MEI1	NM_152513	exon2	c.T236A	p.L79Q	CCTCCCTGGTCAC	.	106	7	123	0	.	70	A	42099396	T	A	42099396	3	1	108	1	0	0	0	0	1	0	0	0	9465	1580	55	4	242	4	MEI1	22	42099396	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	187966	42099396	9205170	247	13524											
ZBED4	9889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50278080	50278104	+	Frame_Shift_Del	DEL	ACCTCCCTGCTCTCCATTACGATGA	ACCTCCCTGCTCTCCATTACGATGA	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	ACCTCCCTGCTCTCCATTACGATGA	ACCTCCCTGCTCTCCATTACGATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZBED4	NM_014838	exon2	c.770_794del	p.257_265del	CTCCCCACCTCCC	.	139	0	164	0	.	92	-	50278104	ACCTCCCTGCTCTCCATTACGATGA	-	50278080	7	5	108	1	0	1	0	1	0	0	0	0	17517	159	6	0	772	0	ZBED4	22	50278080	Frame_Shift_Del	DEL	ACCTCCCTGCTCTCCATTACGATGA	TCGA-ED-A459-01A-11D-A25V-10	8178684	50278080	1026486	248	13525											
SHANK3	85358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51121840	51121840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SHANK3	NM_033517	exon8	c.T958A	p.F320I	ACAGCCTTCCAGG	.	185	12	203	1	.	69	A	51121840	T	A	51121840	3	1	108	1	0	0	0	0	1	0	0	0	14266	1609	56	4	988	4	SHANK3	22	51121840	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	843760	51121840	182726	249	13526											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	6069270	6069270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NLGN4X	NM_181332	exon2	c.T238A	p.S80T	GGGGTGAGGCATA	.	368	26	156	0	.	195	T	6069270	A	T	6069270	3	4	108	1	0	0	0	0	1	0	0	0	10464	304	11	4	2232	4	NLGN4X	23	6069270	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10		6069270	149201290	250	13527											
ZNF41	7592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47307358	47307358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF41	NM_007130	exon5	c.A1811G	p.E604G	GGTTTCTCTCCTG	.	236	202	103	0	.	133	C	47307358	T	C	47307358	3	2	108	1	0	0	0	0	1	0	0	0	17886	1551	54	2	532	2	ZNF41	23	47307358	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	41238088	47307358	107963202	251	13528											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	53672381	53672381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HUWE1	NM_031407	exon7	c.A386T	p.Q129L	ACCACTTGCATAT	.	127	7	53	0	.	280	A	53672381	T	A	53672381	3	1	108	1	0	0	0	0	1	0	0	0	7461	1812	63	4	13050	4	HUWE1	23	53672381	Missense_Mutation	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	6365023	53672381	101598179	252	13529											
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100667970	100667970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HNRNPH2	NM_001032393	exon2	c.G994T	p.D332Y	GAGGCAGATGTTG	.	265	197	140	0	.	130	T	100667970	G	T	100667970	3	4	108	1	0	0	0	0	1	0	0	0	7267	942	33	3	996	3	HNRNPH2	23	100667970	Missense_Mutation	SNP	G	TCGA-ED-A459-01A-11D-A25V-10	46995589	100667970	54602590	253	13530											
SAGE1	55511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134983800	134983800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SAGE1	NM_018666	exon3	c.C170G	p.S57C	GACACTCTTCATC	.	1139	108	528	1	.	133	G	134983800	C	G	134983800	3	3	108	1	0	0	0	0	1	0	0	0	13809	913	32	4	176	4	SAGE1	23	134983800	Missense_Mutation	SNP	C	TCGA-ED-A459-01A-11D-A25V-10	34315830	134983800	20286760	254	13531											
PNMA5	114824	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	152159795	152159795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PNMA5	NM_001103150	exon2	c.T348A	p.S116R	TGTCATACTTCGG	.	258	17	107	1	.	131	T	152159795	A	T	152159795	3	4	108	1	0	0	0	0	1	0	0	0	12156	388	14	4	1002	4	PNMA5	23	152159795	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	17175995	152159795	3110765	255	13532											
TKTL1	8277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153558006	153558006	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TKTL1	NM_012253	exon13	c.A1759T	p.I587L	CATATCATAGTGG	.	222	16	97	0	.	134	T	153558006	A	T	153558006	3	4	108	1	0	0	0	0	1	0	0	0	15932	217	8	4	1809	4	TKTL1	23	153558006	Missense_Mutation	SNP	A	TCGA-ED-A459-01A-11D-A25V-10	1398211	153558006	1712554	256	13533											
F8	2157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	154158501	154158501	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	F8	NM_000132	exon14	c.A3564T	p.P1188P	GCTGCTTGGAAAA	.	134	7	68	0	.	182	A	154158501	T	A	154158501	2	1	108	1	0	0	0	0	0	0	0	1	5350	1799	63	4		4	F8	23	154158501	Silent	SNP	T	TCGA-ED-A459-01A-11D-A25V-10	600495	154158501	1112059	257	13534											
EPHB2	2048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23233358	23233358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EPHB2	NM_004442	exon11	c.G2047A	p.V683I	CCCAACGTCATCC	.	176	23	147	1	.	1381	A	23233358	G	A	23233358	3	1	109	1	0	0	0	0	1	0	0	0	5175	1145	40	1	2089	1	EPHB2	1	23233358	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10		23233358	226017263	1	13535											
ZMYND12	84217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42921631	42921631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZMYND12	NM_032257	exon1	c.G38A	p.R13H	AGTCTGCGCCCCT	.	56	10	52	0	.	91	T	42921631	C	T	42921631	3	4	109	1	0	0	0	0	1	0	0	0	17704	768	27	1	1091	1	ZMYND12	1	42921631	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	19688273	42921631	206328990	2	13536											
LRRC41	10489	broad.mit.edu;bcgsc.ca	37	1	46744688	46744689	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	p.A763N	CCAAAGGCTCCAC	.	75	6	75	0	.	.	TT	46744689	GC	TT	46744688	3	4	109	1	0	0	0	0	1	0	0	0	8999	1203	42	3	154	3	LRRC41	1	46744688	Missense_Mutation	DNP	GC	TCGA-ED-A4XI-01A-11D-A25V-10	3823057	46744688	202505933	3	13537											
USP24	23358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	55624627	55624627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	USP24	NM_015306	exon10	c.A1151G	p.D384G	AGGTCATCCACAA	.	251	14	254	1	.	521	C	55624627	T	C	55624627	3	2	109	1	0	0	0	0	1	0	0	0	17052	1435	50	2	6947	2	USP24	1	55624627	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	8879939	55624627	193625994	4	13538											
MIER1	57708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67436525	67436525	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MIER1	NM_001077700	exon9	c.T807C	p.P269P	GGACCCTGAGTAC	.	126	11	118	0	.	91	C	67436525	T	C	67436525	2	2	109	1	0	0	0	0	0	0	0	1	9580	1567	55	2		2	MIER1	1	67436525	Silent	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	11811898	67436525	181814096	5	13539											
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89578243	89578243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GBP2	NM_004120	exon8	c.T1274A	p.F425Y	TTAGAAAATGTTC	.	193	25	233	0	.	91	T	89578243	A	T	89578243	3	4	109	1	0	0	0	0	1	0	0	0	6274	14	1	4	517	4	GBP2	1	89578243	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	22141718	89578243	159672378	6	13540											
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91784929	91784929	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HFM1	NM_001017975	exon24	c.A2601G	p.L867L	GCATCCTAGTTGA	.	88	14	111	0	.	112	C	91784929	T	C	91784929	2	2	109	1	0	0	0	0	0	0	0	1	7083	1509	53	2		2	HFM1	1	91784929	Silent	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	2206686	91784929	157465692	7	13541											
C1orf146	388649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92711222	92711222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	C1orf146	NM_001012425	exon6	c.C534A	p.N178K	AGTTAACCCAAAT	.	153	28	176	0	.	91	A	92711222	C	A	92711222	3	1	109	1	0	0	0	0	1	0	0	0	2003	506	18	3	552	3	C1orf146	1	92711222	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	926293	92711222	156539399	8	13542											
PALMD	54873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100154912	100154912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PALMD	NM_017734	exon7	c.A1096C	p.K366Q	TCTCCAAAGCCAA	.	126	13	159	1	.	71	C	100154912	A	C	100154912	3	2	109	1	0	0	0	0	1	0	0	0	11411	15	1	5	1122	5	PALMD	1	100154912	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	7443690	100154912	149095709	9	13543											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	118548101	118548101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG17	NM_206996	exon32	c.A4712T	p.Y1571F	ATGATGTACCTGC	.	103	8	104	0	.	158	A	118548101	T	A	118548101	3	1	109	1	0	0	0	0	1	0	0	0	14979	1638	57	4	2027	4	SPAG17	1	118548101	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	18393189	118548101	130702520	10	13544											
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281931	152281931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FLG	NM_002016	exon3	c.G5431T	p.D1811Y	TGGTGTCCTGACC	.	466	65	384	1	.	106	A	152281931	C	A	152281931	3	1	109	1	0	0	0	0	1	0	0	0	5922	855	30	3	6758	3	FLG	1	152281931	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	33733830	152281931	96968690	11	13545											
SPRR2B	6701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153043186	153043186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPRR2B	NM_001017418	exon3	c.C130T	p.P44S	GGCAGGGCTGTGG	.	207	24	216	0	.	68	A	153043186	G	A	153043186	3	1	109	1	0	0	0	0	1	0	0	0	15097	1203	42	3	92	3	SPRR2B	1	153043186	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	761255	153043186	96207435	12	13546											
THBS3	7059	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155168361	155168361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	THBS3	NM_007112	exon17	c.A1913T	p.N638I	GGGCAGTTGTCCT	.	266	20	303	1	.	222	A	155168361	T	A	155168361	3	1	109	1	0	0	0	0	1	0	0	0	15852	1725	60	4	985	4	THBS3	1	155168361	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	2125175	155168361	94082260	13	13547											
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158368778	158368778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR10T2	NM_001004475	exon1	c.C479A	p.A160D	TTGGTGGCCACCA	.	85	5	60	0	.	70	T	158368778	G	T	158368778	3	4	109	1	0	0	0	0	1	0	0	0	10919	1203	42	3	467	3	OR10T2	1	158368778	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	3200417	158368778	90881843	14	13548											
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162760596	162760596	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HSD17B7	NM_016371	exon1	c.A6G	p.R2R	GATGCGAAAGGTG	.	671	86	547	0	.	91	G	162760596	A	G	162760596	2	3	109	1	0	0	0	0	0	0	0	1	7388	233	9	2		2	HSD17B7	1	162760596	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	4391818	162760596	86490025	15	13549											
POGK	57645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166818288	166818288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POGK	NM_017542	exon5	c.A472G	p.I158V	CGGGATATCACAG	.	340	63	304	0	.	91	G	166818288	A	G	166818288	3	3	109	1	0	0	0	0	1	0	0	0	12185	449	16	2	486	2	POGK	1	166818288	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	4057692	166818288	82432333	16	13550											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	198682109	198682109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PTPRC	NM_002838	exon12	c.G1199A	p.C400Y	TTTTTTGTAGAAG	.	140	9	110	0	.	295	A	198682109	G	A	198682109	3	1	109	1	0	0	0	0	1	0	0	0	12797	1377	48	3	1246	3	PTPRC	1	198682109	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	31863821	198682109	50568512	17	13551											
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220826560	220826560	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MARK1	NM_018650	exon16	c.G1854A	p.Q618Q	TGAACAGCTCCGG	.	237	12	230	0	.	802	A	220826560	G	A	220826560	2	1	109	1	0	0	0	0	0	0	0	1	9312	962	34	3		3	MARK1	1	220826560	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	22144451	220826560	28424061	18	13552											
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	1	228559645	228559645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OBSCN	NM_001271223	exon105	c.T24037C	p.C8013R	GCCCCATGCCCTC	.	185	8	164	1	.	403	C	228559645	T	C	228559645	3	2	109	1	0	0	0	0	1	0	0	0	10812	1464	51	2	22746	2	OBSCN	1	228559645	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	7733085	228559645	20690976	19	13553											
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248308834	248308834	+	Missense_Mutation	SNP	C	C	G	rs150844237	alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR2M5	NM_001004690	exon1	c.C385G	p.P129A	TGCCACCCTCTAA	.	508	26	400	0	C|1.000;T|0.000	71	G	248308834	C	G	248308834	3	3	109	1	0	0	0	0	1	0	0	0	11013	623	22	4	387	4	OR2M5	1	248308834	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	19749189	248308834	941787	20	13554											
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248789769	248789769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR2T11	NM_001001964	exon1	c.A661G	p.T221A	GGATGGTTAACAA	.	224	18	198	0	.	69	C	248789769	T	C	248789769	3	2	109	1	0	0	0	0	1	0	0	0	11018	1725	60	2	293	2	OR2T11	1	248789769	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	480935	248789769	460852	21	13555											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71629093	71629093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF638	NM_014497	exon16	c.A2705G	p.E902G	AAACAGAAGAAAT	.	49	9	62	0	.	94	G	71629093	A	G	71629093	3	3	109	1	0	0	0	0	1	0	0	0	18052	246	9	2	2763	2	ZNF638	2	71629093	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10		71629093	171570280	22	13556											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	84921530	84921530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DNAH6	NM_001370	exon46	c.G7450A	p.E2484K	TTTCATGAAGACC	.	158	13	152	0	.	69	A	84921530	G	A	84921530	3	1	109	1	0	0	0	0	1	0	0	0	4605	1291	45	3	7628	3	DNAH6	2	84921530	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	13292437	84921530	158277843	23	13557											
FER1L5	90342	hgsc.bcm.edu;mdanderson.org	37	2	97312182	97312182	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FER1L5	NM_001113382	exon2	c.T130A	p.W44R	CCCGTGTGGAATG	.	273	14	325	0	.	23	A	97312182	T	A	97312182	3	1	109	1	0	0	0	0	1	0	0	0	5814	1696	59	4	136	4	FER1L5	2	97312182	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	12390652	97312182	145887191	24	13558											
MERTK	10461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112686826	112686826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MERTK	NM_006343	exon2	c.T191A	p.M64K	CCTTGATGTTTTC	.	353	39	346	1	.	1463	A	112686826	T	A	112686826	3	1	109	1	0	0	0	0	1	0	0	0	9479	1464	51	4	197	4	MERTK	2	112686826	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	15374644	112686826	130512547	25	13559											
WDR33	55339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128522413	128522413	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	WDR33	NM_001006623	exon6	c.T615C	p.I205I	CTCTCTAATCGCC	.	239	13	194	1	.	90	G	128522413	A	G	128522413	2	3	109	1	0	0	0	0	0	0	0	1	17284	358	13	2		2	WDR33	2	128522413	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	15835587	128522413	114676960	26	13560											
SCN1A	6323	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166852533	166852533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCN1A	NM_001165963	exon24	c.C4571T	p.P1524L	GGTCGAGGTATAG	.	50	5	50	1	.	147	A	166852533	G	A	166852533	3	1	109	1	0	0	0	0	1	0	0	0	13914	1000	35	3	1470	3	SCN1A	2	166852533	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	38330120	166852533	76346840	27	13561	76	2									
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166852534	166852534	+	Missense_Mutation	SNP	G	G	T	rs143088184		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCN1A	NM_001165963	exon24	c.C4570A	p.P1524T	GTCGAGGTATAGG	.	50	5	50	0	G|1.000;T|0.000	147	T	166852534	G	T	166852534	3	4	109	1	0	0	0	0	1	0	0	0	13914	1261	44	3	1471	3	SCN1A	2	166852534	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	1	166852534	76346839	28	13562	76	2									
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169791714	169791714	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ABCB11	NM_003742	exon23	c.C3036T	p.L1012L	GAAATGGAGCCCC	.	165	16	174	0	.	139	A	169791714	G	A	169791714	2	1	109	1	0	0	0	0	0	0	0	1	42	1161	41	3		3	ABCB11	2	169791714	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	2939180	169791714	73407659	29	13563											
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170428398	170428398	+	Missense_Mutation	SNP	C	C	T	rs150915965	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FASTKD1	NM_024622	exon2	c.G142A	p.D48N	CCTCATCTGTACA	.	125	24	132	0	C|1.000;T|0.000	119	T	170428398	C	T	170428398	3	4	109	1	0	0	0	0	1	0	0	0	5685	913	32	3	2457	3	FASTKD1	2	170428398	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	636684	170428398	72770975	30	13564											
CYBRD1	79901	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172411309	172411309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CYBRD1	NM_024843	exon4	c.A833G	p.D278G	CTCTGGATGAGGC	.	202	27	213	1	.	90	G	172411309	A	G	172411309	3	3	109	1	0	0	0	0	1	0	0	0	4134	333	12	2	847	2	CYBRD1	2	172411309	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	1982911	172411309	70788064	31	13565											
ASNSD1	54529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190531503	190531503	+	Silent	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ASNSD1	NM_019048	exon4	c.G645T	p.L215L	TAGCCTGAGTCAA	.	57	7	46	0	.	93	T	190531503	G	T	190531503	2	4	109	1	0	0	0	0	0	0	0	1	1049	1277	45	3		3	ASNSD1	2	190531503	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	18120194	190531503	52667870	32	13566											
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207175044	207175044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZDBF2	NM_020923	exon5	c.G5792T	p.G1931V	AAAAGGGGCGTGT	.	251	31	217	0	.	3	T	207175044	G	T	207175044	3	4	109	1	0	0	0	0	1	0	0	0	17596	1232	43	3	5802	3	ZDBF2	2	207175044	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	16643541	207175044	36024329	33	13567											
CAMP	820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48266103	48266103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CAMP	NM_004345	exon3	c.G329A	p.R110Q	TGAAGCGGTGTAT	.	187	27	231	0	.	91	A	48266103	G	A	48266103	3	1	109	1	0	0	0	0	1	0	0	0	2610	1116	39	1	330	1	CAMP	3	48266103	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10		48266103	149756327	34	13568											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49720037	49720037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	APEH	NM_001640	exon19	c.T1751C	p.M584T	CCCTTATGGGTGG	.	194	35	223	0	.	91	C	49720037	T	C	49720037	3	2	109	1	0	0	0	0	1	0	0	0	768	1464	51	2	1825	2	APEH	3	49720037	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	1453934	49720037	148302393	35	13569											
CISH	1154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50645332	50645332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CISH	NM_013324	exon4	c.G534T	p.Q178H	ATAGTGCTGCACA	.	101	7	122	0	.	710	A	50645332	C	A	50645332	3	1	109	1	0	0	0	0	1	0	0	0	3437	796	28	3	297	3	CISH	3	50645332	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	925295	50645332	147377098	36	13570											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52441262	52441262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BAP1	NM_004656	exon7	c.T508G	p.F170V	TGACAAAGTGGAA	.	148	23	160	0	.	1032	C	52441262	A	C	52441262	3	2	109	1	0	0	0	0	1	0	0	0	1311	72	3	5	1725	5	BAP1	3	52441262	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	1795930	52441262	145581168	37	13571											
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	127642469	127642469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KBTBD12	NM_207335	exon1	c.T565A	p.S189T	AACATATCCAGAG	.	105	5	111	0	.	23	A	127642469	T	A	127642469	3	1	109	1	0	0	0	0	1	0	0	0	7991	1435	50	4	567	4	KBTBD12	3	127642469	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	75201207	127642469	70379961	38	13572											
NMNAT3	349565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139292479	139292479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NMNAT3	NM_178177	exon4	c.G226A	p.G76S	CTGGGCCTTCCAT	.	209	22	253	0	.	90	T	139292479	C	T	139292479	3	4	109	1	0	0	0	0	1	0	0	0	10500	681	24	3	429	3	NMNAT3	3	139292479	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	11650010	139292479	58729951	39	13573											
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184294923	184294923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EPHB3	NM_004443	exon5	c.C1306A	p.P436T	AAGAGCCCTCTGC	.	60	7	68	0	.	1455	A	184294923	C	A	184294923	3	1	109	1	0	0	0	0	1	0	0	0	5176	623	22	3	1324	3	EPHB3	3	184294923	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	45002444	184294923	13727507	40	13574											
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030766	190030766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CLDN1	NM_021101	exon2	c.A283G	p.I95V	CAAAGATTGCTAT	.	191	17	195	0	.	91	C	190030766	T	C	190030766	3	2	109	1	0	0	0	0	1	0	0	0	3471	1493	52	2	364	2	CLDN1	3	190030766	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	5735843	190030766	7991664	41	13575											
LRRC15	131578	broad.mit.edu;mdanderson.org	37	3	194081707	194081707	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LRRC15	NM_001135057	exon3	c.C84T	p.Y28Y	GCCATGGTAGGCC	.	35	7	35	0	.	71	A	194081707	G	A	194081707	2	1	109	1	0	0	0	0	0	0	0	1	8970	1256	44	3		3	LRRC15	3	194081707	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	4050941	194081707	3940723	42	13576											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3240242	3240242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HTT	NM_002111	exon65	c.T8960A	p.F2987Y	ACGACTTCTTCCC	.	197	18	202	0	.	281	A	3240242	T	A	3240242	3	1	109	1	0	0	0	0	1	0	0	0	7457	1783	62	4	9218	4	HTT	4	3240242	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10		3240242	187914034	43	13577											
UBE2K	3093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39780009	39780009	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UBE2K	NM_005339	exon7	c.A558G	p.K186K	TTCAAAATCATGG	.	86	6	63	0	.	23	G	39780009	A	G	39780009	2	3	109	1	0	0	0	0	0	0	0	1	16859	98	4	2		2	UBE2K	4	39780009	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	36539767	39780009	151374267	44	13578											
TXK	7294	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48116411	48116411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TXK	NM_003328	exon2	c.A25G	p.I9V	ACTGGATGGTGTT	.	106	20	105	1	.	521	C	48116411	T	C	48116411	3	2	109	1	0	0	0	0	1	0	0	0	16783	1464	51	2	1614	2	TXK	4	48116411	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	8336402	48116411	143037865	45	13579											
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79808426	79808426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BMP2K	NM_198892	exon15	c.A2050G	p.I684V	CCTTTCATTTCTC	.	101	12	97	0	.	383	G	79808426	A	G	79808426	3	3	109	1	0	0	0	0	1	0	0	0	1460	217	8	2	2146	2	BMP2K	4	79808426	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	31692015	79808426	111345850	46	13580											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119947795	119947795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SYNPO2	NM_001128934	exon3	c.A271G	p.I91V	AGTGGAATAAGTG	.	87	9	95	0	.	92	G	119947795	A	G	119947795	3	3	109	1	0	0	0	0	1	0	0	0	15454	101	4	2	281	2	SYNPO2	4	119947795	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	40139369	119947795	71206481	47	13581											
NUDT6	11162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123814211	123814211	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUDT6	NM_007083	exon5	c.A723G	p.E241E	GCATTCTTCCTGG	.	124	6	140	0	.	90	C	123814211	T	C	123814211	2	2	109	1	0	0	0	0	0	0	0	1	10743	1606	56	2		2	NUDT6	4	123814211	Silent	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	3866416	123814211	67340065	48	13582											
SPATA4	132851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177113883	177113883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPATA4	NM_144644	exon4	c.T583G	p.S195A	ATTCTGATAACCT	.	83	9	100	0	.	90	C	177113883	A	C	177113883	3	2	109	1	0	0	0	0	1	0	0	0	15009	333	12	5	346	5	SPATA4	4	177113883	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	53299672	177113883	14040393	49	13583											
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187073131	187073131	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FAM149A	NM_001006655	exon3	c.A18G	p.K6K	AGGGAAAGTGAAC	.	252	11	261	0	.	90	G	187073131	A	G	187073131	2	3	109	1	0	0	0	0	0	0	0	1	5455	69	3	2		2	FAM149A	4	187073131	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	9959248	187073131	4081145	50	13584											
MARCH11	441061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16067841	16067841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001102562	exon4	c.T948G	p.N316K	GTGCAAATTCACA	.	75	8	69	0	.	.	C	16067841	A	C	16067841	3	2	109	1	0	0	0	0	1	0	0	0	9300	98	4	5	264	5	MARCH11	5	16067841	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10		16067841	164847419	51	13585											
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96215831	96215831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ERAP2	NM_001130140	exon2	c.A442G	p.I148V	GAACAAATTGCAC	.	209	24	205	0	.	68	G	96215831	A	G	96215831	3	3	109	1	0	0	0	0	1	0	0	0	5204	101	4	2	444	2	ERAP2	5	96215831	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	80147990	96215831	84699429	52	13586											
CHSY3	337876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129520025	129520025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CHSY3	NM_175856	exon3	c.A1190G	p.K397R	CCAACAAAAGGCC	.	195	30	143	1	.	25	G	129520025	A	G	129520025	3	3	109	1	0	0	0	0	1	0	0	0	3413	14	1	2	1200	2	CHSY3	5	129520025	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	33304194	129520025	51395235	53	13587											
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137893621	137893621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HSPA9	NM_004134	exon13	c.A1570G	p.I524V	CATCAATGTCAAA	.	211	34	224	0	.	226	C	137893621	T	C	137893621	3	2	109	1	0	0	0	0	1	0	0	0	7417	1464	51	2	489	2	HSPA9	5	137893621	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	8373596	137893621	43021639	54	13588											
PCDHA4	56144	broad.mit.edu;bcgsc.ca	37	5	140187738	140187738	+	Silent	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHA4	NM_031500	exon1	c.C966A	p.G322G	AGAGGGCATTGAT	.	68	6	69	0	.	96	A	140187738	C	A	140187738	2	1	109	1	0	0	0	0	0	0	0	1	11526	697	25	3		3	PCDHA4	5	140187738	Silent	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	2294117	140187738	40727522	55	13589											
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140203713	140203713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHA5	NM_031501	exon1	c.G2353A	p.V785M	GACAACGTGAGTT	.	132	11	161	0	.	137	A	140203713	G	A	140203713	3	1	109	1	0	0	0	0	1	0	0	0	11527	1159	40	1	2355	1	PCDHA5	5	140203713	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	15975	140203713	40711547	56	13590											
PCDHB5	26167	hgsc.bcm.edu;mdanderson.org	37	5	140516630	140516630	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHB5	NM_015669	exon1	c.G1614A	p.P538P	CTCCCCGGCGCTG	.	17	6	15	0	.	95	A	140516630	G	A	140516630	2	1	109	1	0	0	0	0	0	0	0	1	11545	1103	39	1		1	PCDHB5	5	140516630	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	312917	140516630	40398630	57	13591											
KIAA0141	9812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	141314143	141314143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA0141	NM_001142603	exon10	c.A1141T	p.N381Y	GCAGCCAACAATG	.	145	11	164	0	.	91	T	141314143	A	T	141314143	3	4	109	1	0	0	0	0	1	0	0	0	8156	130	5	4	1179	4	KIAA0141	5	141314143	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	797513	141314143	39601117	58	13592											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154311099	154311099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GEMIN5	NM_015465	exon5	c.G700A	p.A234T	CTGGAGCTTGTGC	.	140	27	119	0	.	228	T	154311099	C	T	154311099	3	4	109	1	0	0	0	0	1	0	0	0	6331	797	28	3	3922	3	GEMIN5	5	154311099	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	12996956	154311099	26604161	59	13593											
RIPK1	8737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	3106115	3106115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RIPK1	NM_003804	exon8	c.A1406G	p.Y469C	GATTATATAGCTC	.	230	10	212	0	.	1044	G	3106115	A	G	3106115	3	3	109	1	0	0	0	0	1	0	0	0	13380	449	16	2	1436	2	RIPK1	6	3106115	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10		3106115	168008952	60	13594											
FARS2	10667	hgsc.bcm.edu;bcgsc.ca	37	6	5369076	5369076	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FARS2	NM_006567	exon2	c.G273A	p.E91E	CAAGGAGAGGGTG	.	275	11	276	0	.	90	A	5369076	G	A	5369076	2	1	109	1	0	0	0	0	0	0	0	1	5678	933	33	3		3	FARS2	6	5369076	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	2262961	5369076	165745991	61	13595											
C6orf15	29113	broad.mit.edu;ucsc.edu	37	6	31079842	31079842	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	C6orf15	NM_014070	exon2	c.G294A	p.W98X	TGGAGGCCACCTC	.	173	31	166	1	.	90	T	31079842	C	T	31079842	4	4	109	1	0	0	0	0	0	1	0	0	2336	740	26	3	687	3	C6orf15	6	31079842	Nonsense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	25710766	31079842	140035225	62	13596											
NKAIN2	154215	broad.mit.edu;bcgsc.ca	37	6	124979397	124979397	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NKAIN2	NM_001040214	exon4	c.A339T	p.P113P	TGGACCAGGATGT	.	239	11	264	1	.	23	T	124979397	A	T	124979397	2	4	109	1	0	0	0	0	0	0	0	1	10436	175	7	4		4	NKAIN2	6	124979397	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	93899555	124979397	46135670	63	13597											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	138629875	138629875	+	Splice_Site	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA1244	NM_020340	exon24	c.3974-1G>C	.	CCCTTAGGAAAAG	.	149	9	161	0	.	228	C	138629875	G	C	138629875	5	2	109	1	0	0	0	0	0	0	1	0	8217	1014	35	4	4067	4	KIAA1244	6	138629875	Splice_Site	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	13650478	138629875	32485192	64	13598											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152638095	152638095	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SYNE1	NM_182961	exon87	c.T16599C	p.N5533N	CATTTCATTGTAT	.	63	7	56	0	.	607	G	152638095	A	G	152638095	2	3	109	1	0	0	0	0	0	0	0	1	15442	214	8	2		2	SYNE1	6	152638095	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	14008220	152638095	18476972	65	13599											
TAGAP	117289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159457832	159457832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TAGAP	NM_054114	exon10	c.G1223A	p.R408Q	CCTACCCGGGGCA	.	146	17	157	0	.	91	T	159457832	C	T	159457832	3	4	109	1	0	0	0	0	1	0	0	0	15534	652	23	1	976	1	TAGAP	6	159457832	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	6819737	159457832	11657235	66	13600											
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550283	167550283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCR6	NM_004367	exon3	c.T565C	p.Y189H	CAAAAATACAACA	.	215	37	212	0	.	227	C	167550283	T	C	167550283	3	2	109	1	0	0	0	0	1	0	0	0	2945	1406	49	2	571	2	CCR6	6	167550283	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	8092451	167550283	3564784	67	13601											
PDGFA	5154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	540840	540840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PDGFA	NM_002607	exon5	c.A493G	p.K165E	CTTCTTTTAATTT	.	192	28	180	0	.	454	C	540840	T	C	540840	3	2	109	1	0	0	0	0	1	0	0	0	11657	1850	64	2	165	2	PDGFA	7	540840	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10		540840	158597823	68	13602											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18688120	18688120	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HDAC9	NM_178425	exon10	c.G1281A	p.L427L	TCCCTTGGCAACA	.	65	9	63	0	.	227	A	18688120	G	A	18688120	2	1	109	1	0	0	0	0	0	0	0	1	7014	1339	47	3		3	HDAC9	7	18688120	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	18147280	18688120	140450543	69	13603											
EGFR	1956	broad.mit.edu;bcgsc.ca	37	7	55224279	55224298	+	Frame_Shift_Del	DEL	ACGAATATTAAACACTTCAA	ACGAATATTAAACACTTCAA	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	ACGAATATTAAACACTTCAA	ACGAATATTAAACACTTCAA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EGFR	NM_201283	exon9	c.1060_1079del	p.354_360del	AATGCTACGAATA	.	147	8	142	0	.	44910	-	55224298	ACGAATATTAAACACTTCAA	-	55224279	7	5	109	1	0	1	0	1	0	0	0	0	4967	391	14	0	1094	0	EGFR	7	55224279	Frame_Shift_Del	DEL	ACGAATATTAAACACTTCAA	TCGA-ED-A4XI-01A-11D-A25V-10	36536159	55224279	103914384	70	13604											
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	57528611	57528611	+	Nonsense_Mutation	SNP	T	T	A	rs202240678	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF716	NM_001159279	exon4	c.T444A	p.C148X	CCAATGTTTGTCA	.	159	21	154	0	T|0.995;A|0.005	24	A	57528611	T	A	57528611	4	1	109	1	0	0	0	0	0	1	0	0	18116	1731	60	4	458	4	ZNF716	7	57528611	Nonsense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	2304332	57528611	101610052	71	13605											
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	135122994	135122994	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CNOT4	NM_001190850	exon2	c.86delT	p.F29fs	CAAGGGAAAAAGT	.	225	35	249	0	.	90	-	135122994	A	-	135122994	7	5	109	1	0	1	0	1	0	0	0	0	3621	246	9	0	1978	0	CNOT4	7	135122994	Frame_Shift_Del	DEL	A	TCGA-ED-A4XI-01A-11D-A25V-10	77594383	135122994	24015669	72	13606											
PIP	5304	broad.mit.edu;bcgsc.ca	37	7	142836680	142836680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PIP	NM_002652	exon4	c.T386C	p.V129A	CTGCTGTAATCCC	.	128	6	125	0	.	91	C	142836680	T	C	142836680	3	2	109	1	0	0	0	0	1	0	0	0	11935	1638	57	2	400	2	PIP	7	142836680	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	7713686	142836680	16301983	73	13607											
LGI3	203190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22006415	22006415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LGI3	NM_139278	exon8	c.G905A	p.G302D	TAAGAGCCGCCAA	.	158	29	228	0	.	91	T	22006415	C	T	22006415	3	4	109	1	0	0	0	0	1	0	0	0	8753	739	26	3	745	3	LGI3	8	22006415	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		22006415	124357607	74	13608											
MMP16	4325	hgsc.bcm.edu;broad.mit.edu	37	8	89180168	89180168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MMP16	NM_005941	exon4	c.G439T	p.E147X	GAGTCTCAGGGTC	.	142	7	149	0	.	231	A	89180168	C	A	89180168	4	1	109	1	0	0	0	0	0	1	0	0	9655	835	29	3	1568	3	MMP16	8	89180168	Nonsense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	67173753	89180168	57183854	75	13609											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113348909	113348909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSMD3	NM_198123	exon44	c.G6991C	p.E2331Q	TTGGTTCTGTTTG	.	98	22	85	0	.	1132	G	113348909	C	G	113348909	3	3	109	1	0	0	0	0	1	0	0	0	3946	922	32	4	4244	4	CSMD3	8	113348909	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	24168741	113348909	33015113	76	13610											
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126030343	126030343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SQLE	NM_003129	exon8	c.T1247G	p.L416R	ATCCACTTACTGG	.	49	7	40	0	.	523	G	126030343	T	G	126030343	3	3	109	1	0	0	0	0	1	0	0	0	15127	1609	56	5	1176	5	SQLE	8	126030343	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	12681434	126030343	20333679	77	13611											
SPAG8	26206	bcgsc.ca;mdanderson.org	37	9	35810501	35810501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG8	NM_001039592	exon5	c.G1135A	p.E379K	CAGACTCAACCTC	.	146	13	190	1	.	91	T	35810501	C	T	35810501	3	4	109	1	0	0	0	0	1	0	0	0	14984	835	29	3	585	3	SPAG8	9	35810501	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		35810501	105402930	78	13612											
OR13J1	392309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35869767	35869767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR13J1	NM_001004487	exon1	c.T632A	p.L211Q	AATGCCAGGGGTA	.	108	7	135	0	.	68	T	35869767	A	T	35869767	3	4	109	1	0	0	0	0	1	0	0	0	10944	188	7	4	309	4	OR13J1	9	35869767	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	59266	35869767	105343664	79	13613											
ORM2	5005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117093116	117093116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ORM2	NM_000608	exon3	c.G302A	p.R101Q	TCCAGCGGGAGAA	.	167	21	143	0	.	90	A	117093116	G	A	117093116	3	1	109	1	0	0	0	0	1	0	0	0	11268	1116	39	1	312	1	ORM2	9	117093116	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	81223349	117093116	24120315	80	13614											
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123210343	123210343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDK5RAP2	NM_018249	exon22	c.A2855G	p.Y952C	AGACGATACATAT	.	189	24	203	0	.	229	C	123210343	T	C	123210343	3	2	109	1	0	0	0	0	1	0	0	0	3146	1406	49	2	2894	2	CDK5RAP2	9	123210343	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	6117227	123210343	18003088	81	13615											
PMPCA	23203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139313081	139313081	+	Silent	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PMPCA	NM_015160	exon9	c.C1065G	p.P355P	TGGGCCCGGCAAG	.	137	9	139	0	.	90	G	139313081	C	G	139313081	2	3	109	1	0	0	0	0	0	0	0	1	12140	639	23	4		4	PMPCA	9	139313081	Silent	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	16102738	139313081	1900350	82	13616											
FAM188A	80013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15876612	15876612	+	Missense_Mutation	SNP	T	T	C	rs187883529		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FAM188A	NM_024948	exon7	c.A580G	p.I194V	TTTCAATGCCCTA	.	55	5	51	0	T|0.999;C|0.001	228	C	15876612	T	C	15876612	3	2	109	1	0	0	0	0	1	0	0	0	5514	1464	51	2	793	2	FAM188A	10	15876612	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10		15876612	119658135	83	13617											
NRP1	8829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	33515205	33515205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NRP1	NM_001024629	exon7	c.C994T	p.L332F	GCAGAAGGCCCAA	.	107	11	91	0	.	525	A	33515205	G	A	33515205	3	1	109	1	0	0	0	0	1	0	0	0	10660	1000	35	3	1832	3	NRP1	10	33515205	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	17638593	33515205	102019542	84	13618											
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38345268	38345268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF33A	NM_006954	exon5	c.A2216T	p.H739L	CTCAACATCAGAG	.	123	21	131	0	.	93	T	38345268	A	T	38345268	3	4	109	1	0	0	0	0	1	0	0	0	17851	217	8	4	2230	4	ZNF33A	10	38345268	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	4830063	38345268	97189479	85	13619											
ZNF485	220992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	44112662	44112662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF485	NM_145312	exon5	c.T1171C	p.F391L	AAAGCCTTTCGGC	.	90	7	91	0	.	90	C	44112662	T	C	44112662	3	2	109	1	0	0	0	0	1	0	0	0	17935	1609	56	2	1185	2	ZNF485	10	44112662	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	5767394	44112662	91422085	86	13620											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	70679601	70679601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DDX50	NM_024045	exon8	c.A1103T	p.Q368L	CCATCCAGTGTCA	.	219	20	282	0	.	91	T	70679601	A	T	70679601	3	4	109	1	0	0	0	0	1	0	0	0	4368	188	7	4	1133	4	DDX50	10	70679601	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	26566939	70679601	64855146	87	13621											
MAT1A	4143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82034339	82034339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAT1A	NM_000429	exon8	c.C1022A	p.T341K	CGCTCTGTCTTCT	.	178	22	236	2	.	90	T	82034339	G	T	82034339	3	4	109	1	0	0	0	0	1	0	0	0	9329	1377	48	3	173	3	MAT1A	10	82034339	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	11354738	82034339	53500408	88	13622											
MINPP1	9562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89312033	89312033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MINPP1	NM_004897	exon5	c.A1262G	p.H421R	TTTACCACTGTGA	.	173	7	196	0	.	227	G	89312033	A	G	89312033	3	3	109	1	0	0	0	0	1	0	0	0	9588	159	6	2	1318	2	MINPP1	10	89312033	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	7277694	89312033	46222714	89	13623											
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106166547	106166547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCDC147	NM_001008723	exon15	c.T2252G	p.L751R	TGCTCCTCCAGGT	.	121	15	89	0	.	71	G	106166547	T	G	106166547	3	3	109	1	0	0	0	0	1	0	0	0	2781	1551	54	5	2310	5	CCDC147	10	106166547	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	16854514	106166547	29368200	90	13624											
CSRP3	8048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19206570	19206570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSRP3	NM_003476	exon6	c.G437A	p.R146H	GCACAGCGGAAAC	.	152	17	160	0	.	90	T	19206570	C	T	19206570	3	4	109	1	0	0	0	0	1	0	0	0	3969	768	27	1	155	1	CSRP3	11	19206570	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		19206570	115799946	91	13625											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20805310	20805310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NELL1	NM_006157	exon3	c.T269C	p.L90S	CCATTTTGGCCAC	.	92	19	115	0	.	155	C	20805310	T	C	20805310	3	2	109	1	0	0	0	0	1	0	0	0	10333	1821	63	2	279	2	NELL1	11	20805310	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	1598740	20805310	114201206	92	13626											
PRR5L	79899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36459019	36459019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PRR5L	NM_024841	exon7	c.C437A	p.P146Q	TTTATCCAGTTCA	.	124	5	114	0	.	91	A	36459019	C	A	36459019	3	1	109	1	0	0	0	0	1	0	0	0	12602	594	21	3	461	3	PRR5L	11	36459019	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	15653709	36459019	98547497	93	13627											
UCP3	7352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73717271	73717271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UCP3	NM_003356	exon3	c.A280T	p.I94F	TGCGGATGGAGGC	.	89	9	115	1	.	91	A	73717271	T	A	73717271	3	1	109	1	0	0	0	0	1	0	0	0	16929	1464	51	4	682	4	UCP3	11	73717271	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	37258252	73717271	61289245	94	13628											
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	74546763	74546763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RNF169	NM_001098638	exon6	c.A1115G	p.N372S	AGAGCAATGACAG	.	155	12	183	0	.	69	G	74546763	A	G	74546763	3	3	109	1	0	0	0	0	1	0	0	0	13460	101	4	2	1137	2	RNF169	11	74546763	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	829492	74546763	60459753	95	13629											
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93472409	93472409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TAF1D	NM_024116	exon2	c.A62G	p.N21S	CTTCGATTTGCAA	.	80	15	73	0	.	90	C	93472409	T	C	93472409	3	2	109	1	0	0	0	0	1	0	0	0	15519	1493	52	2	794	2	TAF1D	11	93472409	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	18925646	93472409	41534107	96	13630											
SIAE	54414	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	124517357	124517357	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SIAE	NM_170601	exon7	c.T870C	p.N290N	TGTGCAATTGTAC	.	116	17	100	0	.	90	G	124517357	A	G	124517357	2	3	109	1	0	0	0	0	0	0	0	1	14298	98	4	2		2	SIAE	11	124517357	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	31044948	124517357	10489159	97	13631											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	133799610	133799610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IGSF9B	NM_014987	exon12	c.G1587A	p.W529X	TGGTTCCCAGGAC	.	133	14	154	0	.	68	T	133799610	C	T	133799610	4	4	109	1	0	0	0	0	0	1	0	0	7606	624	22	3	2494	3	IGSF9B	11	133799610	Nonsense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	9282253	133799610	1206906	98	13632											
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	266301	266301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IQSEC3	NM_001170738	exon6	c.T2264C	p.I755T	GGCTCATTGAGGC	.	315	45	385	0	.	560	C	266301	T	C	266301	3	2	109	1	0	0	0	0	1	0	0	0	7819	1493	52	2	2286	2	IQSEC3	12	266301	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10		266301	133585594	99	13633											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2614096	2614096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CACNA1C	NM_001129831	exon8	c.T1202C	p.L401P	TGGTTCTCGGTGT	.	156	17	176	0	.	34	C	2614096	T	C	2614096	3	2	109	1	0	0	0	0	1	0	0	0	2540	1551	54	2	1340	2	CACNA1C	12	2614096	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	2347795	2614096	131237799	100	13634											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737905	4737905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	AKAP3	NM_006422	exon4	c.G163A	p.E55K	GGAACTCTGCTGT	.	181	37	191	0	.	292	T	4737905	C	T	4737905	3	4	109	1	0	0	0	0	1	0	0	0	452	922	32	3	2406	3	AKAP3	12	4737905	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	2123809	4737905	129113990	101	13635											
LEMD3	23592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	65633985	65633985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LEMD3	NM_014319	exon8	c.A2093G	p.H698R	TTCCACATGTACG	.	131	8	113	0	.	516	G	65633985	A	G	65633985	3	3	109	1	0	0	0	0	1	0	0	0	8721	217	8	2	2123	2	LEMD3	12	65633985	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	60896080	65633985	68217910	102	13636											
PPP1R12A	4659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80199549	80199549	+	Splice_Site	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PPP1R12A	NM_001143885	exon16	c.1824-1G>A	.	GAGGTACTATAGC	.	178	32	150	1	.	273	T	80199549	C	T	80199549	5	4	109	1	0	0	0	0	0	0	1	0	12354	579	20	3	1317	3	PPP1R12A	12	80199549	Splice_Site	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	14565564	80199549	53652346	103	13637											
COX6A1	1337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120878337	120878337	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	COX6A1	NM_004373	exon3	c.A327G	p.E109E	AGATGAATAAAGA	.	221	28	252	0	.	90	G	120878337	A	G	120878337	2	3	109	1	0	0	0	0	0	0	0	1	3774	98	4	2		2	COX6A1	12	120878337	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	40678788	120878337	12973558	104	13638											
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	67801110	67801110	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDH9	NM_203487	exon2	c.T1463A	p.L488X	GTTGTTAAGTATA	.	202	33	170	0	.	96	T	67801110	A	T	67801110	4	4	109	1	0	0	0	0	0	1	0	0	11518	372	13	4	2266	4	PCDH9	13	67801110	Nonsense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10		67801110	47368768	105	13639											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101726938	101726938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NALCN	NM_052867	exon36	c.C4030G	p.L1344V	GCAAGAGAAACAT	.	43	7	38	0	.	167	C	101726938	G	C	101726938	3	2	109	1	0	0	0	0	1	0	0	0	10148	942	33	4	1222	4	NALCN	13	101726938	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	33925828	101726938	13442940	106	13640											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101759941	101759941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NALCN	NM_052867	exon22	c.C2476A	p.L826I	CTCTGAGTTCCTC	.	140	22	133	0	.	167	T	101759941	G	T	101759941	3	4	109	1	0	0	0	0	1	0	0	0	10148	1029	36	3	2832	3	NALCN	13	101759941	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	33003	101759941	13409937	107	13641											
NUBPL	80224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32031297	32031297	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUBPL	NM_025152	exon2	c.C132T	p.T44T	TGAGACCCTAAAA	.	62	11	66	0	.	226	T	32031297	C	T	32031297	2	4	109	1	0	0	0	0	0	0	0	1	10717	610	22	3		3	NUBPL	14	32031297	Silent	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		32031297	75318243	108	13642											
ARHGAP5	394	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	32563379	32563379	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARHGAP5	NM_001173	exon2	c.T3504A	p.Y1168X	ATACTATAGAAGA	.	141	11	163	0	.	94	A	32563379	T	A	32563379	4	1	109	1	0	0	0	0	0	1	0	0	886	1413	49	4	3506	4	ARHGAP5	14	32563379	Nonsense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	532082	32563379	74786161	109	13643											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23890789	23890789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_019066	exon1	c.G2101A	p.V701I	CTGCTACCGGGGG	.	76	21	100	0	.	.	T	23890789	C	T	23890789	3	4	109	1	0	0	0	0	1	0	0	0	9189	507	18	3	1652	3	MAGEL2	15	23890789	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		23890789	78640603	110	13644											
RYR3	6263	broad.mit.edu;bcgsc.ca	37	15	34080629	34080629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RYR3	NM_001243996	exon67	c.C9800A	p.P3267H	TCTACCCCATGCT	.	126	8	134	1	.	520	A	34080629	C	A	34080629	3	1	109	1	0	0	0	0	1	0	0	0	13770	623	22	3	10066	3	RYR3	15	34080629	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	10189840	34080629	68450763	111	13645											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43318859	43318859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UBR1	NM_174916	exon23	c.A2435C	p.K812T	CCTGGTTTCCTAA	.	52	12	47	0	.	91	G	43318859	T	G	43318859	3	3	109	1	0	0	0	0	1	0	0	0	16898	1841	64	5	2914	5	UBR1	15	43318859	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	9238230	43318859	59212533	112	13646											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65994749	65994749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DENND4A	NM_001144823	exon17	c.G2324T	p.C775F	GGGAGACAAATAA	.	190	9	189	0	.	229	A	65994749	C	A	65994749	3	1	109	1	0	0	0	0	1	0	0	0	4433	478	17	3	3464	3	DENND4A	15	65994749	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	22675890	65994749	36536643	113	13647											
CT62	196993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	71404534	71404534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001102658	exon3	c.A88T	p.S30C	AATGGCTGAATGT	.	102	12	110	0	.	.	A	71404534	T	A	71404534	3	1	109	1	0	0	0	0	1	0	0	0	3990	1580	55	4	330	4	CT62	15	71404534	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	5409785	71404534	31126858	114	13648											
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	71548960	71548960	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	THSD4	NM_024817	exon5	c.A921G	p.P307P	ATGTCCAGAAAGC	.	106	11	115	0	.	92	G	71548960	A	G	71548960	2	3	109	1	0	0	0	0	0	0	0	1	15875	175	7	2		2	THSD4	15	71548960	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	144426	71548960	30982432	115	13649											
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28846411	28846411	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ATXN2L	NM_148414	exon19	c.A2466G	p.P822P	CAACCCACGCATG	.	168	22	200	0	.	92	G	28846411	A	G	28846411	2	3	109	1	0	0	0	0	0	0	0	1	1212	146	6	2		2	ATXN2L	16	28846411	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10		28846411	61508342	116	13650											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31088438	31088438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF646	NM_014699	exon2	c.A793G	p.I265V	CTGGGCATCTACC	.	151	16	179	0	.	153	G	31088438	A	G	31088438	3	3	109	1	0	0	0	0	1	0	0	0	18059	217	8	2	795	2	ZNF646	16	31088438	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	2242027	31088438	59266315	117	13651											
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	50744637	50744637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NOD2	NM_022162	exon4	c.G815A	p.S272N	AGAAGAGCCCAGC	.	105	10	125	0	.	231	A	50744637	G	A	50744637	3	1	109	1	0	0	0	0	1	0	0	0	10517	971	34	3	829	3	NOD2	16	50744637	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	19656199	50744637	39610116	118	13652											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	64981642	64981642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDH11	NM_001797	exon13	c.C2255A	p.A752D	GACCCGGCCACTG	.	130	8	161	0	.	852	T	64981642	G	T	64981642	3	4	109	1	0	0	0	0	1	0	0	0	3097	1203	42	3	139	3	CDH11	16	64981642	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	14237005	64981642	25373111	119	13653	77	2									
CDH11	1009	broad.mit.edu;bcgsc.ca	37	16	64981643	64981643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDH11	NM_001797	exon13	c.G2254A	p.A752T	ACCCGGCCACTGA	.	131	8	160	1	.	852	T	64981643	C	T	64981643	3	4	109	1	0	0	0	0	1	0	0	0	3097	739	26	3	140	3	CDH11	16	64981643	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	1	64981643	25373110	120	13654	77	2									
FBXO31	79791	broad.mit.edu;bcgsc.ca	37	16	87376465	87376487	+	Frame_Shift_Del	DEL	GCCGGCTGGTGGGCTCACCTCCT	GCCGGCTGGTGGGCTCACCTCCT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GCCGGCTGGTGGGCTCACCTCCT	GCCGGCTGGTGGGCTCACCTCCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FBXO31	NM_024735	exon5	c.728_732del	p.243_244del	CACAGGGCCGGCT	.	132	8	178	0	.	226	-	87376487	GCCGGCTGGTGGGCTCACCTCCT	-	87376465	7	5	109	1	0	1	0	1	0	0	0	0	5741	1218	42	0		0	FBXO31	16	87376465	Frame_Shift_Del	DEL	GCCGGCTGGTGGGCTCACCTCCT	TCGA-ED-A4XI-01A-11D-A25V-10	22394822	87376465	2978288	121	13655											
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3680880	3680880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ITGAE	NM_002208	exon2	c.G109A	p.V37M	TGAGCACGAAAGG	.	147	20	141	1	.	161	T	3680880	C	T	3680880	3	4	109	1	0	0	0	0	1	0	0	0	7885	536	19	1	3550	1	ITGAE	17	3680880	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		3680880	77514330	122	13656											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4876952	4876952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CAMTA2	NM_001171167	exon13	c.G2198A	p.R733Q	ATGCCCCGGAAGG	.	90	11	105	0	.	91	T	4876952	C	T	4876952	3	4	109	1	0	0	0	0	1	0	0	0	2614	652	23	1	1573	1	CAMTA2	17	4876952	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	1196072	4876952	76318258	123	13657											
ARHGEF15	22899	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8216404	8216404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARHGEF15	NM_025014	exon3	c.A766G	p.I256V	CCAAGCATCGGTC	.	101	13	85	1	.	230	G	8216404	A	G	8216404	3	3	109	1	0	0	0	0	1	0	0	0	898	217	8	2	772	2	ARHGEF15	17	8216404	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	3339452	8216404	72978806	124	13658											
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10356573	10356573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MYH4	NM_017533	exon24	c.C3007T	p.L1003F	CCTGGAGAGCCTT	.	271	45	241	1	.	102	A	10356573	G	A	10356573	3	1	109	1	0	0	0	0	1	0	0	0	10037	942	33	3	2880	3	MYH4	17	10356573	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	2140169	10356573	70838637	125	13659											
NCOR1	9611	broad.mit.edu;bcgsc.ca	37	17	15942894	15942923	+	In_Frame_Del	DEL	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NCOR1	NM_006311	exon44	c.6779_6808del	p.2260_2270del	TGAGAGCCTTCCT	.	185	9	194	0	.	229	-	15942923	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	-	15942894	7	5	109	1	0	1	0	1	0	0	0	0	10235	739	26	0	526	0	NCOR1	17	15942894	In_Frame_Del	DEL	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	TCGA-ED-A4XI-01A-11D-A25V-10	5586321	15942894	65252316	126	13660											
SLC5A10	125206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18872410	18872410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SLC5A10	NM_001042450	exon6	c.T499G	p.W167G	CTGGGCTGGAACT	.	156	11	209	0	.	91	G	18872410	T	G	18872410	3	3	109	1	0	0	0	0	1	0	0	0	14662	1580	55	5	521	5	SLC5A10	17	18872410	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	2929516	18872410	62322800	127	13661											
CCL13	6357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	32685070	32685070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCL13	NM_005408	exon3	c.A217G	p.I73V	AAGGAGATCTGTG	.	146	13	104	0	.	90	G	32685070	A	G	32685070	3	3	109	1	0	0	0	0	1	0	0	0	2884	333	12	2	227	2	CCL13	17	32685070	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	13812660	32685070	48510140	128	13662											
WNK4	65266	broad.mit.edu;bcgsc.ca	37	17	40945608	40945615	+	In_Frame_Del	DEL	AGGTATAT	AGGTATAT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	AGGTATAT	AGGTATAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	WNK4	NM_032387	exon12	c.2158_2163del	p.720_721del	CTCGCAAGGTATA	.	159	9	165	0	.	336	-	40945615	AGGTATAT	-	40945608	7	5	109	1	0	1	0	1	0	0	0	0	17377	86	3	0	2202	0	WNK4	17	40945608	In_Frame_Del	DEL	AGGTATAT	TCGA-ED-A4XI-01A-11D-A25V-10	8260538	40945608	40249602	129	13663											
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49048126	49048126	+	Silent	SNP	C	C	A	rs112947211	bycluster;byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG9	NM_001130528	exon29	c.G3792T	p.T1264T	CAAGGGCGTCTGA	.	143	17	198	0	C|0.999;T|0.001	659	A	49048126	C	A	49048126	2	1	109	1	0	0	0	0	0	0	0	1	14985	755	27	1		1	SPAG9	17	49048126	Silent	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	8102518	49048126	32147084	130	13664											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51901391	51901391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIF2B	NM_032559	exon1	c.G997A	p.A333T	CTGGTGGCACAGG	.	122	18	117	0	.	98	A	51901391	G	A	51901391	3	1	109	1	0	0	0	0	1	0	0	0	8298	1203	42	3	999	3	KIF2B	17	51901391	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	2853265	51901391	29293819	131	13665											
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61613399	61613399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KCNH6	NM_030779	exon6	c.G1471A	p.V491I	GAGAAGGTCTTCT	.	145	16	151	0	.	91	A	61613399	G	A	61613399	3	1	109	1	0	0	0	0	1	0	0	0	8036	1261	44	3	1493	3	KCNH6	17	61613399	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	9712008	61613399	19581811	132	13666											
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79589216	79589216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NPLOC4	NM_017921	exon3	c.A185T	p.K62I	AGGGATTTGTTGG	.	89	9	93	0	.	24	A	79589216	T	A	79589216	3	1	109	1	0	0	0	0	1	0	0	0	10586	1841	64	4	1701	4	NPLOC4	17	79589216	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	17975817	79589216	1605994	133	13667											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3155037	3155037	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MYOM1	NM_003803	exon11	c.G1551A	p.K517K	CAAGCACTTCACA	.	72	9	78	0	.	94	T	3155037	C	T	3155037	2	4	109	1	0	0	0	0	0	0	0	1	10091	564	20	3		3	MYOM1	18	3155037	Silent	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		3155037	74922211	134	13668											
NDUFV2	4729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9119504	9119504	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NDUFV2	NM_021074	exon4	c.A216G	p.E72E	TCCAGAAGGCCAT	.	113	11	118	0	.	91	G	9119504	A	G	9119504	2	3	109	1	0	0	0	0	0	0	0	1	10300	69	3	2		2	NDUFV2	18	9119504	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	5964467	9119504	68957744	135	13669											
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14537808	14537808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POTEC	NM_001137671	exon3	c.A802G	p.K268E	TGTTTTTTGATTC	.	348	49	351	0	.	3	C	14537808	T	C	14537808	3	2	109	1	0	0	0	0	1	0	0	0	12262	1850	64	2	862	2	POTEC	18	14537808	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	5418304	14537808	63539440	136	13670											
MOCOS	55034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	33778679	33778679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MOCOS	NM_017947	exon3	c.A259G	p.S87G	ATCAGCAGCAAGC	.	237	12	222	0	.	91	G	33778679	A	G	33778679	3	3	109	1	0	0	0	0	1	0	0	0	9689	188	7	2	269	2	MOCOS	18	33778679	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	19240871	33778679	44298569	137	13671											
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61325772	61325772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SERPINB3	NM_006919	exon5	c.C444A	p.N148K	CCAGGAGTTAATC	.	103	12	105	0	.	228	T	61325772	G	T	61325772	3	4	109	1	0	0	0	0	1	0	0	0	14102	1020	36	3	744	3	SERPINB3	18	61325772	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	27547093	61325772	16751476	138	13672											
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77895740	77895740	+	Missense_Mutation	SNP	A	A	T	rs113879497	byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ADNP2	NM_014913	exon4	c.A2444T	p.N815I	ATGCCAATGGCAA	.	94	16	92	0	A|0.999;G|0.001	140	T	77895740	A	T	77895740	3	4	109	1	0	0	0	0	1	0	0	0	324	101	4	4	2454	4	ADNP2	18	77895740	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	16569968	77895740	181508	139	13673											
CD70	970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6586092	6586092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CD70	NM_001252	exon3	c.C521A	p.T174K	AAAAGTGTCCCAG	.	102	16	93	0	.	227	T	6586092	G	T	6586092	3	4	109	1	0	0	0	0	1	0	0	0	3033	1377	48	3	64	3	CD70	19	6586092	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10		6586092	52542891	140	13674											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9059729	9059729	+	Silent	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MUC16	NM_024690	exon3	c.C27717G	p.S9239S	GACAGAGGAAGGA	.	281	26	367	0	.	566	C	9059729	G	C	9059729	2	2	109	1	0	0	0	0	0	0	0	1	9973	987	35	4		4	MUC16	19	9059729	Silent	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	2473637	9059729	50069254	141	13675											
OR7D4	125958	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9324952	9324952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR7D4	NM_001005191	exon1	c.G562T	p.A188S	AGCAGGCCACCTT	.	206	50	275	1	.	71	A	9324952	C	A	9324952	3	1	109	1	0	0	0	0	1	0	0	0	11220	739	26	3	380	3	OR7D4	19	9324952	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	265223	9324952	49804031	142	13676											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10600002	10600002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KEAP1	NM_012289	exon5	c.A1574G	p.Y525C	CCATCATAGCCCC	.	152	9	197	0	.	637	C	10600002	T	C	10600002	3	2	109	1	0	0	0	0	1	0	0	0	8141	1406	49	2	308	2	KEAP1	19	10600002	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	1275050	10600002	48528981	143	13677											
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	24309164	24309164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF254	NM_203282	exon4	c.A362T	p.Q121L	ATTTACAGTTAAG	.	120	6	91	0	.	90	T	24309164	A	T	24309164	3	4	109	1	0	0	0	0	1	0	0	0	17795	188	7	4	376	4	ZNF254	19	24309164	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	13709162	24309164	34819819	144	13678											
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884090	36884090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZFP82	NM_133466	exon5	c.T1152G	p.H384Q	TCTGTGATGGAGA	.	114	11	101	0	.	91	C	36884090	A	C	36884090	3	2	109	1	0	0	0	0	1	0	0	0	17650	330	12	5	450	5	ZFP82	19	36884090	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	12574926	36884090	22244893	145	13679											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42798805	42798805	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CIC	NM_015125	exon19	c.A4377G	p.P1459P	GGTGCCATACTCC	.	114	18	148	0	.	591	G	42798805	A	G	42798805	2	3	109	1	0	0	0	0	0	0	0	1	3424	204	8	2		2	CIC	19	42798805	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	5914715	42798805	16330178	146	13680											
SCAF1	58506	hgsc.bcm.edu;mdanderson.org	37	19	50156751	50156751	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCAF1	NM_021228	exon7	c.A3105G	p.E1035E	AGAGGAAGAGGAG	.	19	6	23	0	.	68	G	50156751	A	G	50156751	2	3	109	1	0	0	0	0	0	0	0	1	13868	69	3	2		2	SCAF1	19	50156751	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	7357946	50156751	8972232	147	13681											
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54310856	54310856	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NLRP12	NM_144687	exon4	c.G2136A	p.L712L	GTTTGGATTGGTG	.	133	6	158	0	.	211	T	54310856	A	T	54310856	2	4	109	1	0	0	0	0	0	0	0	1	10474	330	12	4		4	NLRP12	19	54310856	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	4154105	54310856	4818127	148	13682											
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59063031	59063031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CHMP2A	NM_198426	exon6	c.C654A	p.N218K	CCGCAGGTTCTTA	.	69	5	76	0	.	90	T	59063031	G	T	59063031	3	4	109	1	0	0	0	0	1	0	0	0	3354	1252	44	3	18	3	CHMP2A	19	59063031	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	4752175	59063031	65952	149	13683											
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20582430	20582430	+	Missense_Mutation	SNP	C	C	T	rs147045442		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RALGAPA2	NM_020343	exon16	c.G2099A	p.R700Q	TGGCTCCGCCAGC	.	67	13	76	0	C|0.999;T|0.000	24	T	20582430	C	T	20582430	3	4	109	1	0	0	0	0	1	0	0	0	13014	652	23	1	3618	1	RALGAPA2	20	20582430	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		20582430	42443090	150	13684											
PLK1S1	55857	hgsc.bcm.edu;broad.mit.edu	37	20	21213370	21213370	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001163023	exon9	c.1384-2A>T	.	TATCACAGGTTTG	.	132	6	113	0	.	.	T	21213370	A	T	21213370	5	4	109	1	0	0	0	0	0	0	1	0	12095	202	7	4	1823	4	PLK1S1	20	21213370	Splice_Site	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	630940	21213370	41812150	151	13685											
DIDO1	11083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511798	61511798	+	Missense_Mutation	SNP	A	A	C	rs147241583	byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DIDO1	NM_001193369	exon16	c.T5510G	p.V1837G	GGTGCCACTCCTC	.	154	16	172	1	A|0.999;G|0.001	96	C	61511798	A	C	61511798	3	2	109	1	0	0	0	0	1	0	0	0	4522	159	6	5	1216	5	DIDO1	20	61511798	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	40298428	61511798	1513722	152	13686											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511821	61511821	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DIDO1	NM_001193369	exon16	c.T5487C	p.S1829S	AAGGTAAGAGGGT	.	129	14	156	0	.	96	G	61511821	A	G	61511821	2	3	109	1	0	0	0	0	0	0	0	1	4522	59	3	2		2	DIDO1	20	61511821	Silent	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	23	61511821	1513699	153	13687											
KRTAP13-3	337960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31797785	31797785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KRTAP13-3	NM_181622	exon1	c.C446T	p.P149L	TAGATTGGATGGC	.	72	7	103	0	.	92	A	31797785	G	A	31797785	3	1	109	1	0	0	0	0	1	0	0	0	8524	1348	47	3	76	3	KRTAP13-3	21	31797785	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10		31797785	16332110	154	13688											
SIM2	6493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38117042	38117042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SIM2	NM_005069	exon10	c.T1181C	p.F394S	GCTCGTTCCAAAT	.	82	8	80	2	.	90	C	38117042	T	C	38117042	3	2	109	1	0	0	0	0	1	0	0	0	14324	1783	62	2	1219	2	SIM2	21	38117042	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	6319257	38117042	10012853	155	13689											
CSTB	1476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45194153	45194153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSTB	NM_000100	exon3	c.A227G	p.E76G	TTGTTTTCATGAG	.	341	26	335	0	.	90	C	45194153	T	C	45194153	3	2	109	1	0	0	0	0	1	0	0	0	3982	1783	62	2	73	2	CSTB	21	45194153	Missense_Mutation	SNP	T	TCGA-ED-A4XI-01A-11D-A25V-10	7077111	45194153	2935742	156	13690											
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35942929	35942929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RASD2	NM_014310	exon2	c.C73G	p.L25V	GTGGTGCTGGGTG	.	129	15	150	0	.	659	G	35942929	C	G	35942929	3	3	109	1	0	0	0	0	1	0	0	0	13067	796	28	4	75	4	RASD2	22	35942929	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		35942929	15361637	157	13691											
CELSR1	9620	ucsc.edu;mdanderson.org	37	22	46787590	46787590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CELSR1	NM_014246	exon15	c.G6088A	p.G2030S	GGCGGCCGATGAC	.	14	4	14	0	.	525	T	46787590	C	T	46787590	3	4	109	1	0	0	0	0	1	0	0	0	3221	652	23	1	3040	1	CELSR1	22	46787590	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10	10844661	46787590	4516976	158	13692											
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334164	102334164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NXF3	NM_022052	exon16	c.G1363A	p.G455R	ACACCCCGTTGAC	.	275	87	270	0	.	205	T	102334164	C	T	102334164	3	4	109	1	0	0	0	0	1	0	0	0	10785	652	23	1	248	1	NXF3	23	102334164	Missense_Mutation	SNP	C	TCGA-ED-A4XI-01A-11D-A25V-10		102334164	52936396	159	13693											
KIAA1210	57481	ucsc.edu;bcgsc.ca	37	X	118230575	118230575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA1210	NM_020721	exon8	c.C1148T	p.T383I	AGCTGGGTGCTAC	.	63	18	74	2	.	67	A	118230575	G	A	118230575	3	1	109	1	0	0	0	0	1	0	0	0	8214	1261	44	3	4009	3	KIAA1210	23	118230575	Missense_Mutation	SNP	G	TCGA-ED-A4XI-01A-11D-A25V-10	15896411	118230575	37039985	160	13694											
MAGEA4	4103	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151093077	151093077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAGEA4	NM_001011548	exon3	c.A941T	p.E314V	AGGAGGAAGAGGG	.	103	8	132	0	.	194	T	151093077	A	T	151093077	3	4	109	1	0	0	0	0	1	0	0	0	9168	246	9	4	943	4	MAGEA4	23	151093077	Missense_Mutation	SNP	A	TCGA-ED-A4XI-01A-11D-A25V-10	32862502	151093077	4177483	161	13695											
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15909713	15909713	+	Silent	SNP	T	T	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	AGMAT	NM_024758	exon2	c.A450C	p.A150A	GCCAGCTGCTACA	.	63	9	53	0	.	91	G	15909713	T	G	15909713	2	3	110	1	0	0	0	0	0	0	0	1	385	1567	55	5		5	AGMAT	1	15909713	Silent	SNP	T	TCGA-ED-A5KG-01A-11D-A27I-10		15909713	233340908	1	13696											
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	74507289	74507289	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRIQ3	NM_001105659	exon7	c.T1326A	p.V442V	GGCTACAACTCTT	.	42	4	44	0	.	92	T	74507289	A	T	74507289	2	4	110	1	0	0	0	0	0	0	0	1	9030	117	5	4		4	LRRIQ3	1	74507289	Silent	SNP	A	TCGA-ED-A5KG-01A-11D-A27I-10	58597576	74507289	174743332	2	13697											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	205041630	205041630	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CNTN2	NM_005076	exon21	c.C2751A	p.G917G	TCCTGGCAACATC	.	80	8	72	0	.	91	A	205041630	C	A	205041630	2	1	110	1	0	0	0	0	0	0	0	1	3641	697	25	3		3	CNTN2	1	205041630	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10	130534341	205041630	44208991	3	13698											
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237947093	237947093	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RYR2	NM_001035	exon90	c.G12081A	p.T4027T	TTTGACGTCGTCT	.	135	8	137	1	.	158	A	237947093	G	A	237947093	2	1	110	1	0	0	0	0	0	0	0	1	13769	1132	40	1		1	RYR2	1	237947093	Silent	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10	32905463	237947093	11303528	4	13699											
ADCY2	108	hgsc.bcm.edu;bcgsc.ca	37	5	7396525	7396525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADCY2	NM_020546	exon1	c.G116A	p.C39Y	ACTACTGCATGAG	.	62	4	94	0	.	97	A	7396525	G	A	7396525	3	1	110	1	0	0	0	0	1	0	0	0	294	1319	46	3	118	3	ADCY2	5	7396525	Missense_Mutation	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10		7396525	173518735	5	13700											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	33891885	33891885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADAMTS12	NM_030955	exon1	c.A77G	p.Y26C	CTCCCATAGCAAA	.	361	22	354	0	.	232	C	33891885	T	C	33891885	3	2	110	1	0	0	0	0	1	0	0	0	257	1406	49	2	4803	2	ADAMTS12	5	33891885	Missense_Mutation	SNP	T	TCGA-ED-A5KG-01A-11D-A27I-10	26495360	33891885	147023375	6	13701											
NIPBL	25836	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37016248	37016248	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	NIPBL	NM_015384	exon23	c.C4752T	p.L1584L	ACTACTCCTTAGT	.	81	12	75	1	.	293	T	37016248	C	T	37016248	2	4	110	1	0	0	0	0	0	0	0	1	10428	842	30	3		3	NIPBL	5	37016248	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10	3124363	37016248	143899012	7	13702											
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29395394	29395394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR11A1	NM_013937	exon1	c.G25A	p.E9K	TAGTTTCGTTTCC	.	89	6	68	0	.	23	T	29395394	C	T	29395394	3	4	110	1	0	0	0	0	1	0	0	0	10924	893	31	1	926	1	OR11A1	6	29395394	Missense_Mutation	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		29395394	141719673	8	13703											
RHBDD2	57414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75511359	75511359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RHBDD2	NM_001040456	exon2	c.G391T	p.D131Y	GTGGAGGATGCCA	.	258	21	225	0	.	90	T	75511359	G	T	75511359	3	4	110	1	0	0	0	0	1	0	0	0	13317	1174	41	3	397	3	RHBDD2	7	75511359	Missense_Mutation	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10		75511359	83627304	9	13704											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132193186	132193186	+	Silent	SNP	G	G	A	rs139250180	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	PLXNA4,NS,carcinoma,-2	PLXNA4	NM_001105543	exon2	c.C267T	p.D89D	GTCCTCGTCCGGC	.	77	8	87	0	G|0.999;A|0.001	91	A	132193186	G	A	132193186	2	1	110	1	0	0	0	0	0	0	0	1	12122	1136	40	1		1	PLXNA4	7	132193186	Silent	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10	56681827	132193186	26945477	10	13705											
SLC13A4	26266	broad.mit.edu;bcgsc.ca	37	7	135376053	135376053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SLC13A4	NM_012450	exon13	c.C1339A	p.L447M	TCCCCAGTGAGTG	.	138	6	138	0	.	90	T	135376053	G	T	135376053	3	4	110	1	0	0	0	0	1	0	0	0	14394	1020	36	3	557	3	SLC13A4	7	135376053	Missense_Mutation	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10	3182867	135376053	23762610	11	13706											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2949136	2949136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CSMD1	NM_033225	exon48	c.C7187T	p.T2396I	TGTTCAGTATGAT	.	32	4	29	0	.	86	A	2949136	G	A	2949136	3	1	110	1	0	0	0	0	1	0	0	0	3944	1029	36	3	3599	3	CSMD1	8	2949136	Missense_Mutation	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10		2949136	143414886	12	13707											
ODF1	4956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	103572783	103572783	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ODF1	NM_024410	exon2	c.C424A	p.R142R	AAAGTTCGAGTGA	.	245	13	192	0	.	70	A	103572783	C	A	103572783	2	1	110	1	0	0	0	0	0	0	0	1	10826	876	31	1		1	ODF1	8	103572783	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10	100623647	103572783	42791239	13	13708											
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4967860	4967860	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR51A4	NM_001005329	exon1	c.G471T	p.L157L	AAGAACCAGGAGC	.	237	13	206	0	.	71	A	4967860	C	A	4967860	2	1	110	1	0	0	0	0	0	0	0	1	11087	581	21	3		3	OR51A4	11	4967860	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		4967860	130038656	14	13709											
OR8B4	283162	hgsc.bcm.edu;broad.mit.edu	37	11	124294075	124294075	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR8B4	NM_001005196	exon1	c.G693A	p.E231E	TCTGCCCTCTGCA	.	98	4	92	0	.	69	T	124294075	C	T	124294075	2	4	110	1	0	0	0	0	0	0	0	1	11229	680	24	3		3	OR8B4	11	124294075	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10	119326215	124294075	10712441	15	13710											
LRRK2	120892	ucsc.edu;bcgsc.ca	37	12	40715938	40715938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRK2	NM_198578	exon36	c.C5272T	p.H1758Y	GACAATCATCCAG	.	39	4	32	0	.	533	T	40715938	C	T	40715938	3	4	110	1	0	0	0	0	1	0	0	0	9033	826	29	3	5414	3	LRRK2	12	40715938	Missense_Mutation	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		40715938	93135957	16	13711											
CREBBP	1387	broad.mit.edu;bcgsc.ca	37	16	3817806	3817806	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CREBBP	NM_004380	exon16	c.G3165A	p.V1055V	TACTTTCACTTCA	.	104	6	83	0	.	1807	T	3817806	C	T	3817806	2	4	110	1	0	0	0	0	0	0	0	1	3861	813	29	3		3	CREBBP	16	3817806	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		3817806	86536947	17	13712											
VWA3A	146177	broad.mit.edu;bcgsc.ca	37	16	22152958	22152958	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	VWA3A	NM_173615	exon24	c.A2439T	p.S813S	CAAGTCAAGGGAA	.	164	14	166	2	.	1	T	22152958	A	T	22152958	2	4	110	1	0	0	0	0	0	0	0	1	17237	117	5	4		4	VWA3A	16	22152958	Silent	SNP	A	TCGA-ED-A5KG-01A-11D-A27I-10	18335152	22152958	68201795	18	13713											
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50106573	50106573	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	HEATR3	NM_182922	exon5	c.G570T	p.V190V	GATTGTGTTAAAG	.	82	5	130	0	.	92	T	50106573	G	T	50106573	2	4	110	1	0	0	0	0	0	0	0	1	7029	1364	48	3		3	HEATR3	16	50106573	Silent	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10	27953615	50106573	40248180	19	13714											
ARHGEF15	22899	ucsc.edu;bcgsc.ca	37	17	8215882	8215882	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ARHGEF15	NM_025014	exon2	c.C525T	p.L175L	AGGTCTCCAAGCG	.	25	4	34	0	.	230	T	8215882	C	T	8215882	2	4	110	1	0	0	0	0	0	0	0	1	898	842	30	3		3	ARHGEF15	17	8215882	Silent	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		8215882	72979328	20	13715											
CA4	762	hgsc.bcm.edu;broad.mit.edu	37	17	58235740	58235740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CA4	NM_000717	exon7	c.C677T	p.T226I	TCACCACACCGAC	.	130	8	103	0	.	226	T	58235740	C	T	58235740	3	4	110	1	0	0	0	0	1	0	0	0	2518	478	17	3	703	3	CA4	17	58235740	Missense_Mutation	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10	50019858	58235740	22959470	21	13716											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76451796	76451796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DNAH17	NM_173628	exon63	c.G10100A	p.G3367D	AAGTAGCCCACGT	.	187	8	198	0	.	142	T	76451796	C	T	76451796	3	4	110	1	0	0	0	0	1	0	0	0	4601	739	26	3	3364	3	DNAH17	17	76451796	Missense_Mutation	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10	18216056	76451796	4743414	22	13717											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47390748	47390748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MYO5B	NM_001080467	exon28	c.G3606T	p.R1202S	CTCTTGCCTCTGG	.	47	4	47	0	.	72	A	47390748	C	A	47390748	3	1	110	1	0	0	0	0	1	0	0	0	10079	738	26	3	1992	3	MYO5B	18	47390748	Missense_Mutation	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		47390748	30686500	23	13718											
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223141	44223141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	IRGC	NM_019612	exon2	c.G431A	p.R144H	CCCGCCGCTGCGG	.	18	9	42	0	.	70	A	44223141	G	A	44223141	3	1	110	1	0	0	0	0	1	0	0	0	7838	1087	38	1	433	1	IRGC	19	44223141	Missense_Mutation	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10		44223141	14905842	24	13719											
SRC	6714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36031248	36031248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SRC	NM_005417	exon13	c.C1367G	p.T456S	TGCTGACTGAGCT	.	138	12	124	0	.	2731	G	36031248	C	G	36031248	3	3	110	1	0	0	0	0	1	0	0	0	15133	565	20	4	1405	4	SRC	20	36031248	Missense_Mutation	SNP	C	TCGA-ED-A5KG-01A-11D-A27I-10		36031248	26994272	25	13720											
CXorf58	254158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23934445	23934445	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CXorf58	NM_152761	exon5	c.G423A	p.K141K	AAGTAAGGTGACG	.	152	9	143	0	.	130	A	23934445	G	A	23934445	2	1	110	1	0	0	0	0	0	0	0	1	4114	1014	35	3		3	CXorf58	23	23934445	Silent	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10		23934445	131336115	26	13721											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	31525469	31525469	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DMD	NM_004006	exon56	c.C8319A	p.V2773V	TAACAGGACTGCA	.	166	8	133	0	.	265	T	31525469	G	T	31525469	2	4	110	1	0	0	0	0	0	0	0	1	4580	1161	41	3		3	DMD	23	31525469	Silent	SNP	G	TCGA-ED-A5KG-01A-11D-A27I-10	7591024	31525469	123745091	27	13722											
TBX2	6909	broad.mit.edu;ucsc.edu	37	17	59479224	59479224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	TBX2	NM_005994	exon2	c.G575T	p.S192I	CAGACAGCCCAGC	.	38	7	49	0	.	226	T	59479224	G	T	59479224	3	4	111	1	0	0	0	0	1	0	0	0	15652	971	34	3	581	3	TBX2	17	59479224	Missense_Mutation	SNP	G	TCGA-ED-A627-01A-12D-A30V-10		59479224	21715986	1	13723											
PLEKHM2	23207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16059140	16059140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PLEKHM2	NM_015164	exon19	c.C2839T	p.P947S	CTCCCGCCCTGGG	.	28	10	28	0	.	23	T	16059140	C	T	16059140	3	4	112	1	0	0	0	0	1	0	0	0	12081	739	26	3	2913	3	PLEKHM2	1	16059140	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10		16059140	233191481	1	13724											
RCC2	55920	broad.mit.edu;bcgsc.ca	37	1	17752173	17752173	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	RCC2	NM_001136204	exon3	c.C387T	p.Y129Y	ATTGCGGTAAGCA	.	139	42	131	2	.	90	A	17752173	G	A	17752173	2	1	112	1	0	0	0	0	0	0	0	1	13174	1256	44	3		3	RCC2	1	17752173	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	1693033	17752173	231498448	2	13725											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158908870	158908870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PYHIN1	NM_152501	exon4	c.A412C	p.K138Q	TTGTAGAAAAGAA	.	176	17	105	0	.	94	C	158908870	A	C	158908870	3	2	112	1	0	0	0	0	1	0	0	0	12865	260	9	5	422	5	PYHIN1	1	158908870	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10	141156697	158908870	90341751	3	13726											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180907742	180907742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	KIAA1614	NM_020950	exon6	c.C2813T	p.T938M	ACTCCACGGGCAT	.	161	29	97	0	.	26	T	180907742	C	T	180907742	3	4	112	1	0	0	0	0	1	0	0	0	8248	536	19	1	2835	1	KIAA1614	1	180907742	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	21998872	180907742	68342879	4	13727											
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	217955552	217955552	+	Missense_Mutation	SNP	C	C	T	rs145142638	byfrequency	TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SPATA17	NM_138796	exon8	c.C760T	p.R254C	GAACAACGCTACA	.	290	17	221	0	C|0.999;T|0.001	69	T	217955552	C	T	217955552	3	4	112	1	0	0	0	0	1	0	0	0	15001	536	19	1	790	1	SPATA17	1	217955552	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	37047810	217955552	31295069	5	13728											
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231349708	231349708	+	Silent	SNP	C	C	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TRIM67	NM_001004342	exon9	c.C2271G	p.L757L	CAGCCTCAACCGC	.	171	23	133	0	.	229	G	231349708	C	G	231349708	2	3	112	1	0	0	0	0	0	0	0	1	16537	813	29	4		4	TRIM67	1	231349708	Silent	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	13394156	231349708	17900913	6	13729											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245530501	245530501	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	KIF26B	NM_018012	exon3	c.G831A	p.A277A	TGGGGCGGAAAAG	.	260	23	152	0	.	25	A	245530501	G	A	245530501	2	1	112	1	0	0	0	0	0	0	0	1	8295	1103	39	1		1	KIF26B	1	245530501	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	14180793	245530501	3720120	7	13730											
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248551768	248551768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	OR2T6	NM_001005471	exon1	c.C859T	p.P287S	TTAAACCCTCTCA	.	152	34	101	0	.	71	T	248551768	C	T	248551768	3	4	112	1	0	0	0	0	1	0	0	0	11029	623	22	3	861	3	OR2T6	1	248551768	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	3021267	248551768	698853	8	13731											
ACADL	33	hgsc.bcm.edu;bcgsc.ca	37	2	211069378	211069379	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ACADL	NM_001608	exon7	c.797_798insA	p.I266fs	AACCGTATATCTT	.	68	12	63	0	.	90	T	211069379	-	T	211069378	7	5	112	1	0	1	1	0	0	0	0	0	112	449	16	0	515	0	ACADL	2	211069378	Frame_Shift_Ins	INS	-	TCGA-ED-A66X-01A-11D-A30V-10		211069378	32129995	9	13732											
SCN10A	6336	broad.mit.edu;ucsc.edu	37	3	38791656	38791656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SCN10A	NM_006514	exon12	c.A1775G	p.K592R	GTCTTCTTTTGTC	.	64	11	66	1	.	99	C	38791656	T	C	38791656	3	2	112	1	0	0	0	0	1	0	0	0	13912	1609	56	2	4159	2	SCN10A	3	38791656	Missense_Mutation	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10		38791656	159230774	10	13733											
SLC15A2	6565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121630500	121630500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SLC15A2	NM_021082	exon4	c.C415A	p.Q139K	GGAGGACAAGTGG	.	86	18	72	0	.	91	A	121630500	C	A	121630500	3	1	112	1	0	0	0	0	1	0	0	0	14399	479	17	3	429	3	SLC15A2	3	121630500	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	82838844	121630500	76391930	11	13734											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130107781	130107781	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	.	NM_153264	exon6	c.G2220A	p.A740A	AGTAGCGCAGGAT	.	120	44	110	0	.	.	A	130107781	G	A	130107781	2	1	112	1	0	0	0	0	0	0	0	1	3702	1074	38	1		1	COL6A5	3	130107781	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	8477281	130107781	67914649	12	13735											
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134670256	134670256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	EPHB1,NS,carcinoma,0	EPHB1	NM_004441	exon3	c.G167A	p.R56H	CCATCCGCACCTA	.	74	10	64	0	.	1492	A	134670256	G	A	134670256	3	1	112	1	0	0	0	0	1	0	0	0	5174	1087	38	1	177	1	EPHB1	3	134670256	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	4562475	134670256	63352174	13	13736											
XRN1	54464	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142103424	142103424	+	Missense_Mutation	SNP	G	G	A	rs141258147		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	XRN1	NM_001042604	exon21	c.C2443T	p.R815C	CTAGACGAACTTC	.	72	11	100	1	G|1.000;A|0.000	93	A	142103424	G	A	142103424	3	1	112	1	0	0	0	0	1	0	0	0	17456	1058	37	1	2765	1	XRN1	3	142103424	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	7433168	142103424	55919006	14	13737											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195487851	195487851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	MUC4	NM_018406	exon16	c.T14752A	p.S4918T	TGCATGAGCTATC	.	131	15	82	0	.	90	T	195487851	A	T	195487851	3	4	112	1	0	0	0	0	1	0	0	0	9978	304	11	4	1526	4	MUC4	3	195487851	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10	53384427	195487851	2534579	15	13738											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46976276	46976276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	GABRA4	NM_000809	exon6	c.T694C	p.S232P	CACTTGATACGGT	.	84	12	80	0	.	156	G	46976276	A	G	46976276	3	3	112	1	0	0	0	0	1	0	0	0	6163	333	12	2	986	2	GABRA4	4	46976276	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10		46976276	144178000	16	13739											
SLC6A19	340024	broad.mit.edu;bcgsc.ca	37	5	1219158	1219158	+	Silent	SNP	C	C	T	rs141604151		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SLC6A19	NM_001003841	exon9	c.C1314T	p.G438G	GGAGGGCGTCGTT	.	99	10	54	0	C|1.000;T|0.000	90	T	1219158	C	T	1219158	2	4	112	1	0	0	0	0	0	0	0	1	14682	755	27	1		1	SLC6A19	5	1219158	Silent	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10		1219158	179696102	17	13740											
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14749332	14749332	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ANKH	NM_054027	exon6	c.T771G	p.I257M	GTTGACAATAGGC	.	63	10	59	0	.	91	C	14749332	A	C	14749332	3	2	112	1	0	0	0	0	1	0	0	0	627	126	5	5	735	5	ANKH	5	14749332	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10	13530174	14749332	166165928	18	13741											
NFKBIL1	4795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31515977	31515977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	NFKBIL1	NM_005007	exon2	c.G95A	p.R32H	GCCAACGCCGAGA	.	61	7	58	0	.	90	A	31515977	G	A	31515977	3	1	112	1	0	0	0	0	1	0	0	0	10381	1087	38	1	101	1	NFKBIL1	6	31515977	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10		31515977	139599090	19	13742											
SCUBE3	222663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35210863	35210863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SCUBE3	NM_152753	exon15	c.C1759A	p.L587I	AAGATGCTCAGAA	.	100	28	79	1	.	91	A	35210863	C	A	35210863	3	1	112	1	0	0	0	0	1	0	0	0	13946	797	28	3	1817	3	SCUBE3	6	35210863	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	3694886	35210863	135904204	20	13743											
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	130761733	130761733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TMEM200A	NM_001258277	exon3	c.C166T	p.R56W	AAAATCCGGCTTT	.	142	12	108	0	.	23	T	130761733	C	T	130761733	3	4	112	1	0	0	0	0	1	0	0	0	16120	643	23	1	168	1	TMEM200A	6	130761733	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	95550870	130761733	40353334	21	13744											
ARID1B	57492	hgsc.bcm.edu;bcgsc.ca	37	6	157099362	157099362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ARID1B	NM_017519	exon1	c.T299A	p.L100H	ACCACCTCCACCA	.	36	8	28	0	.	154	A	157099362	T	A	157099362	3	1	112	1	0	0	0	0	1	0	0	0	914	1551	54	4	301	4	ARID1B	6	157099362	Missense_Mutation	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10	26337629	157099362	14015705	22	13745											
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166912106	166912106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	RPS6KA2	NM_001006932	exon9	c.G661A	p.D221N	TCTTGTCGTGGTC	.	62	6	51	0	.	1405	T	166912106	C	T	166912106	3	4	112	1	0	0	0	0	1	0	0	0	13651	884	31	1	1620	1	RPS6KA2	6	166912106	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	9812744	166912106	4202961	23	13746											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72891607	72891607	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	BAZ1B	NM_032408	exon7	c.C2184T	p.F728F	TTCTAGGAACTCA	.	79	21	74	0	.	159	A	72891607	G	A	72891607	2	1	112	1	0	0	0	0	0	0	0	1	1330	1165	41	3		3	BAZ1B	7	72891607	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10		72891607	86247056	24	13747											
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	100711796	100711796	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	VPS13B	NM_017890	exon36	c.G6165T	p.L2055L	AAACCTGAGTTTC	.	133	6	77	0	.	301	T	100711796	G	T	100711796	2	4	112	1	0	0	0	0	0	0	0	1	17187	1277	45	3		3	VPS13B	8	100711796	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10		100711796	45652226	25	13748											
EIF3E	3646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109240530	109240530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	EIF3E	NM_001568	exon7	c.G688C	p.D230H	TATTATCGCGACC	.	460	50	251	1	.	188	G	109240530	C	G	109240530	3	3	112	1	0	0	0	0	1	0	0	0	5015	884	31	4	677	4	EIF3E	8	109240530	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	8528734	109240530	37123492	26	13749											
TRPM3	80036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	73477842	73477842	+	Silent	SNP	G	G	A	rs145250735	byfrequency;alternate_allele	TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TRPM3	NM_001007471	exon3	c.C444T	p.G148G	GGAATGGCCACCT	.	191	25	174	1	G|0.999;T|0.001	521	A	73477842	G	A	73477842	2	1	112	1	0	0	0	0	0	0	0	1	16584	1190	42	3		3	TRPM3	9	73477842	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10		73477842	67735589	27	13750											
PLXDC2	84898	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	20432307	20432307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PLXDC2	NM_032812	exon5	c.A625C	p.S209R	GATCCCAGTGTAT	.	112	15	79	1	.	93	C	20432307	A	C	20432307	3	2	112	1	0	0	0	0	1	0	0	0	12118	188	7	5	643	5	PLXDC2	10	20432307	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10		20432307	115102440	28	13751											
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	68686790	68686790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	LRRTM3	NM_178011	exon2	c.G116T	p.R39M	GCTGTAGGTGTGA	.	97	8	92	0	.	93	T	68686790	G	T	68686790	3	4	112	1	0	0	0	0	1	0	0	0	9041	1000	35	3	122	3	LRRTM3	10	68686790	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	48254483	68686790	66847957	29	13752											
SH3PXD2A	9644	broad.mit.edu;mdanderson.org	37	10	105362841	105362841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SH3PXD2A	NM_014631	exon14	c.T2050A	p.S684T	TTTTGGACAAGGA	.	27	5	30	0	.	226	T	105362841	A	T	105362841	3	4	112	1	0	0	0	0	1	0	0	0	14256	275	10	4	1271	4	SH3PXD2A	10	105362841	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10	36676051	105362841	30171906	30	13753											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129913861	129913861	+	Missense_Mutation	SNP	C	C	T	rs201650569		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	MKI67	NM_002417	exon7	c.G811A	p.A271T	CTGTTGCGTAATC	.	81	18	46	0	.	519	T	129913861	C	T	129913861	3	4	112	1	0	0	0	0	1	0	0	0	9598	768	27	1	8995	1	MKI67	10	129913861	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	24551020	129913861	5620886	31	13754											
OR51I1	390063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5461996	5461996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	OR51I1	NM_001005288	exon1	c.T749C	p.V250A	GCCAGCACTGCAC	.	93	29	85	1	.	69	G	5461996	A	G	5461996	3	3	112	1	0	0	0	0	1	0	0	0	11100	159	6	2	199	2	OR51I1	11	5461996	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10		5461996	129544520	32	13755											
OR10A6	390093	broad.mit.edu;ucsc.edu	37	11	7949333	7949333	+	Nonsense_Mutation	SNP	G	G	A	rs147185885	byfrequency	TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	OR10A6	NM_001004461	exon1	c.C877T	p.R293X	TATTTCGCAAACT	.	119	12	142	0	G|1.000;A|0.000	70	A	7949333	G	A	7949333	4	1	112	1	0	0	0	0	0	1	0	0	10894	1095	38	1	70	1	OR10A6	11	7949333	Nonsense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	2487337	7949333	127057183	33	13756											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74880711	74880711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SLCO2B1	NM_007256	exon6	c.G683A	p.G228E	TTGTAGGGATCCT	.	79	8	47	0	.	154	A	74880711	G	A	74880711	3	1	112	1	0	0	0	0	1	0	0	0	14727	1246	43	3	705	3	SLCO2B1	11	74880711	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	66931378	74880711	60125805	34	13757											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4724998	4724998	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	AKAP3	NM_006422	exon5	c.G2469A	p.S823S	CAGCACCGACTGC	.	134	21	96	0	.	292	T	4724998	C	T	4724998	2	4	112	1	0	0	0	0	0	0	0	1	452	639	23	1		1	AKAP3	12	4724998	Silent	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10		4724998	129126897	35	13758											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64057564	64057564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	DPY19L2	NM_173812	exon3	c.C424T	p.R142W	TCTCCCGTTCCAA	.	392	47	509	0	.	515	A	64057564	G	A	64057564	3	1	112	1	0	0	0	0	1	0	0	0	4741	1144	40	1	1932	1	DPY19L2	12	64057564	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	59332566	64057564	69794331	36	13759											
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93170633	93170633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	EEA1	NM_003566	exon28	c.T4100C	p.V1367A	ACTGTTACTGAAA	.	83	14	78	0	.	229	G	93170633	A	G	93170633	3	3	112	1	0	0	0	0	1	0	0	0	4921	391	14	2	143	2	EEA1	12	93170633	Missense_Mutation	SNP	A	TCGA-ED-A66X-01A-11D-A30V-10	29113069	93170633	40681262	37	13760											
YY1	7528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	100705845	100705845	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	YY1	NM_003403	exon1	c.G264T	p.P88P	GCAGCCGCTGGTC	.	47	7	30	0	.	226	T	100705845	G	T	100705845	2	4	112	1	0	0	0	0	0	0	0	1	17504	1074	38	1		1	YY1	14	100705845	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10		100705845	6643695	38	13761											
TJP1	7082	ucsc.edu;bcgsc.ca	37	15	30010303	30010303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TJP1	NM_003257	exon22	c.A3896G	p.K1299R	GAAGGTTTAGATG	.	134	30	105	1	.	95	C	30010303	T	C	30010303	3	2	112	1	0	0	0	0	1	0	0	0	15926	1841	64	2	1378	2	TJP1	15	30010303	Missense_Mutation	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10		30010303	72521089	39	13762											
TTBK2	146057	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	43164898	43164898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TTBK2	NM_173500	exon3	c.C128T	p.T43I	TCCCTGGTGAGCA	.	89	15	71	1	.	338	A	43164898	G	A	43164898	3	1	112	1	0	0	0	0	1	0	0	0	16674	1261	44	3	3658	3	TTBK2	15	43164898	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	13154595	43164898	59366494	40	13763											
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65497772	65497772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	CILP	NM_003613	exon5	c.A457G	p.S153G	ATGGGCTCCAGAT	.	51	7	45	1	.	97	C	65497772	T	C	65497772	3	2	112	1	0	0	0	0	1	0	0	0	3429	1551	54	2	3117	2	CILP	15	65497772	Missense_Mutation	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10	22332874	65497772	37033620	41	13764											
DNAJA4	55466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78562999	78562999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	DNAJA4	NM_018602	exon3	c.G380A	p.R127Q	GTGGACGGATGGC	.	111	22	83	0	.	226	A	78562999	G	A	78562999	3	1	112	1	0	0	0	0	1	0	0	0	4614	1116	39	1	445	1	DNAJA4	15	78562999	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	13065227	78562999	23968393	42	13765											
CAMTA2	23125	broad.mit.edu;bcgsc.ca	37	17	4877747	4877747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	CAMTA2	NM_001171167	exon12	c.A2018G	p.K673R	ATCCGCTTCTCCA	.	43	16	49	2	.	91	C	4877747	T	C	4877747	3	2	112	1	0	0	0	0	1	0	0	0	2614	1609	56	2	1757	2	CAMTA2	17	4877747	Missense_Mutation	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10		4877747	76317463	43	13766											
PFAS	5198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8170947	8170947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PFAS	NM_012393	exon26	c.G3346A	p.G1116S	GTGGGCGGCTTCA	.	77	9	54	0	.	94	A	8170947	G	A	8170947	3	1	112	1	0	0	0	0	1	0	0	0	11754	1116	39	1	3444	1	PFAS	17	8170947	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	3293200	8170947	73024263	44	13767											
TADA2A	6871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35804825	35804825	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TADA2A	NM_001488	exon8	c.T559C	p.L187L	TGGGACTTGAGAG	.	163	21	139	0	.	230	C	35804825	T	C	35804825	2	2	112	1	0	0	0	0	0	0	0	1	15507	1606	56	2		2	TADA2A	17	35804825	Silent	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10	27633878	35804825	45390385	45	13768											
KRT19	3880	broad.mit.edu;mdanderson.org	37	17	39684492	39684492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	KRT19	NM_002276	exon1	c.C8T	p.S3F	CTGTAGGAAGTCA	.	35	10	23	0	.	90	A	39684492	G	A	39684492	3	1	112	1	0	0	0	0	1	0	0	0	8456	1174	41	3	1218	3	KRT19	17	39684492	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	3879667	39684492	41510718	46	13769											
BRIP1	83990	ucsc.edu;bcgsc.ca	37	17	59821818	59821818	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	BRIP1	NM_032043	exon15	c.C2232T	p.D744D	GATTGCGTCATAG	.	223	37	214	2	.	660	A	59821818	G	A	59821818	2	1	112	1	0	0	0	0	0	0	0	1	1514	1136	40	1		1	BRIP1	17	59821818	Silent	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	20137326	59821818	21373392	47	13770											
TMC6	11322	broad.mit.edu;bcgsc.ca	37	17	76120700	76120700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TMC6	NM_001127198	exon8	c.C796G	p.L266V	CCACCAGCAGCAG	.	91	6	60	1	.	90	C	76120700	G	C	76120700	3	2	112	1	0	0	0	0	1	0	0	0	15986	962	34	4	1673	4	TMC6	17	76120700	Missense_Mutation	SNP	G	TCGA-ED-A66X-01A-11D-A30V-10	16298882	76120700	5074510	48	13771											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80049392	80049392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	FASN	NM_004104	exon9	c.G1198A	p.V400M	TGTGCACGTTGGA	.	159	18	127	0	.	90	T	80049392	C	T	80049392	3	4	112	1	0	0	0	0	1	0	0	0	5683	536	19	1	6477	1	FASN	17	80049392	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	3928692	80049392	1145818	49	13772											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38993172	38993172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	RYR1	NM_001042723	exon48	c.C7640T	p.A2547V	AGATGGCGCTGGC	.	37	5	29	0	.	100	T	38993172	C	T	38993172	3	4	112	1	0	0	0	0	1	0	0	0	13768	768	27	1	7830	1	RYR1	19	38993172	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10		38993172	20135811	50	13773											
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51961351	51961351	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SIGLEC8	NM_014442	exon1	c.A291G	p.Q97Q	AAGGAGTTGGAAT	.	147	24	168	0	.	94	C	51961351	T	C	51961351	2	2	112	1	0	0	0	0	0	0	0	1	14314	1722	60	2		2	SIGLEC8	19	51961351	Silent	SNP	T	TCGA-ED-A66X-01A-11D-A30V-10	12968179	51961351	7167632	51	13774											
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13279761	13279761	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ISM1	NM_080826	exon6	c.C1050T	p.D350D	GAAGGACGCCAGC	.	64	6	64	0	.	68	T	13279761	C	T	13279761	2	4	112	1	0	0	0	0	0	0	0	1	7860	535	19	1		1	ISM1	20	13279761	Silent	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10		13279761	49745759	52	13775											
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37630379	37630379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	DHX35	NM_021931	exon9	c.C649T	p.R217W	AAATTCCGGGATT	.	53	7	45	0	.	226	T	37630379	C	T	37630379	3	4	112	1	0	0	0	0	1	0	0	0	4508	643	23	1	683	1	DHX35	20	37630379	Missense_Mutation	SNP	C	TCGA-ED-A66X-01A-11D-A30V-10	24350618	37630379	25395141	53	13776											
UBR4	23352	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19478351	19478351	+	Silent	SNP	G	G	A	rs144919897	byfrequency	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	UBR4	NM_020765	exon48	c.C6999T	p.P2333P	GCCTCCGGGCTGT	.	56	32	92	0	G|0.995;A|0.005	612	A	19478351	G	A	19478351	2	1	113	1	0	0	0	0	0	0	0	1	16901	1103	39	1		1	UBR4	1	19478351	Silent	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		19478351	229772270	1	13777											
GUCA2B	2981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42620502	42620502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GUCA2B	NM_007102	exon2	c.C242T	p.A81V	TCTGCGCCTCGCA	.	123	85	112	0	.	90	T	42620502	C	T	42620502	3	4	113	1	0	0	0	0	1	0	0	0	6892	739	26	3	248	3	GUCA2B	1	42620502	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	23142151	42620502	206630119	2	13778											
OR10R2	343406	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158449817	158449817	+	Silent	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	OR10R2	NM_001004472	exon1	c.T150A	p.V50V	TGTAGTTTTTCTT	.	148	61	104	2	.	161	A	158449817	T	A	158449817	2	1	113	1	0	0	0	0	0	0	0	1	10917	1828	64	4		4	OR10R2	1	158449817	Silent	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	115829315	158449817	90800804	3	13779											
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179815558	179815558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TOR1AIP2	NM_001199260	exon7	c.G1061A	p.G354E	TCAAACCCATAGC	.	80	32	51	0	.	69	T	179815558	C	T	179815558	3	4	113	1	0	0	0	0	1	0	0	0	16370	623	22	3	355	3	TOR1AIP2	1	179815558	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	21365741	179815558	69435063	4	13780											
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196274416	196274416	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KCNT2	NM_198503	exon22	c.T2543G	p.M848R	AATTGCATGAATC	.	167	58	113	0	.	159	C	196274416	A	C	196274416	3	2	113	1	0	0	0	0	1	0	0	0	8092	217	8	5	892	5	KCNT2	1	196274416	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	16458858	196274416	52976205	5	13781											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21249795	21249795	+	Silent	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	APOB	NM_000384	exon15	c.T2109C	p.A703A	AAAAAGAGCTTCC	.	150	78	212	0	.	175	G	21249795	A	G	21249795	2	3	113	1	0	0	0	0	0	0	0	1	785	291	11	2		2	APOB	2	21249795	Silent	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10		21249795	221949578	6	13782											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61430400	61430400	+	Splice_Site	SNP	T	T	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	USP34	NM_014709	exon76	c.9385-2A>C	.	TTGCCCTGAAGGT	.	55	35	57	0	.	579	G	61430400	T	G	61430400	5	3	113	1	0	0	0	0	0	0	1	0	17062	1594	55	5	1281	5	USP34	2	61430400	Splice_Site	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	40180605	61430400	181768973	7	13783											
MPHOSPH10	10199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71360572	71360572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MPHOSPH10	NM_005791	exon2	c.G634T	p.A212S	ATGGAGGCCTATT	.	161	91	278	0	.	93	T	71360572	G	T	71360572	3	4	113	1	0	0	0	0	1	0	0	0	9725	1203	42	3	640	3	MPHOSPH10	2	71360572	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	9930172	71360572	171838801	8	13784											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167149749	167149749	+	Missense_Mutation	SNP	A	A	T	rs200457046	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SCN9A	NM_002977	exon9	c.T1099A	p.Y367N	GTTGGTAAAGGTT	.	85	30	96	0	.	181	T	167149749	A	T	167149749	3	4	113	1	0	0	0	0	1	0	0	0	13925	362	13	4	4910	4	SCN9A	2	167149749	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	95789177	167149749	76049624	9	13785											
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219114171	219114171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ARPC2	NM_005731	exon8	c.A761G	p.H254R	ACTACCACATCAA	.	45	18	55	0	.	91	G	219114171	A	G	219114171	3	3	113	1	0	0	0	0	1	0	0	0	971	159	6	2	791	2	ARPC2	2	219114171	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	51964422	219114171	24085202	10	13786											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	230657707	230657707	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TRIP12	NM_004238	exon26	c.A3898T	p.R1300X	GGTATCTCTCGAT	.	68	40	90	0	.	572	A	230657707	T	A	230657707	4	1	113	1	0	0	0	0	0	1	0	0	16553	1559	54	4	2144	4	TRIP12	2	230657707	Nonsense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	11543536	230657707	12541666	11	13787											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25654029	25654029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TOP2B	NM_001068	exon28	c.A3748G	p.K1250E	ACTTTTTGCTGGC	.	48	28	43	0	.	273	C	25654029	T	C	25654029	3	2	113	1	0	0	0	0	1	0	0	0	16363	1821	63	2	1153	2	TOP2B	3	25654029	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10		25654029	172368401	12	13788											
HEMK1	51409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50609148	50609148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HEMK1	NM_016173	exon3	c.G236A	p.S79N	TTCAGAGCCTGAG	.	56	33	77	0	.	278	A	50609148	G	A	50609148	3	1	113	1	0	0	0	0	1	0	0	0	7051	971	34	3	242	3	HEMK1	3	50609148	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	24955119	50609148	147413282	13	13789											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52415808	52415809	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	.	.	.	p.G2588R	GGGCGTGGGTGGC	.	78	23	112	0	.	.	TC	52415809	GG	TC	52415808	3	4	113	1	0	0	0	0	1	0	0	0	4597	1335	47	3	7951	3	DNAH1	3	52415808	Missense_Mutation	DNP	GG	TCGA-ED-A66Y-01A-11D-A30V-10	1806660	52415808	145606622	14	13790											
PHF7	51533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52448577	52448577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PHF7	NM_016483	exon4	c.A160G	p.N54D	AAAGACAATATCA	.	85	45	105	0	.	153	G	52448577	A	G	52448577	3	3	113	1	0	0	0	0	1	0	0	0	11839	130	5	2	170	2	PHF7	3	52448577	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	32769	52448577	145573853	15	13791											
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	119134792	119134792	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ARHGAP31	NM_020754	exon12	c.C4016A	p.S1339X	ACAGGTCAAGGCC	.	85	31	98	0	.	92	A	119134792	C	A	119134792	4	1	113	1	0	0	0	0	0	1	0	0	880	838	29	3	4062	3	ARHGAP31	3	119134792	Nonsense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	66686215	119134792	78887638	16	13792											
PARP9	83666	ucsc.edu;bcgsc.ca	37	3	122271265	122271265	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PARP9	NM_031458	exon5	c.G1212A	p.Q404Q	ACTTACCTGAGGT	.	106	65	156	2	.	525	T	122271265	C	T	122271265	2	4	113	1	0	0	0	0	0	0	0	1	11466	695	24	3		3	PARP9	3	122271265	Silent	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	3136473	122271265	75751165	17	13793											
ADCY5	111	broad.mit.edu;mdanderson.org	37	3	123166435	123166435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ADCY5	NM_183357	exon1	c.C958A	p.P320T	GCTGCGGCAGCAG	.	25	7	35	1	.	94	T	123166435	G	T	123166435	3	4	113	1	0	0	0	0	1	0	0	0	297	1203	42	3	2911	3	ADCY5	3	123166435	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	895170	123166435	74855995	18	13794											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154860094	154860094	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MME	NM_007287	exon12	c.A1163T	p.K388M	CCTACAAGGAGTC	.	96	26	129	0	.	516	T	154860094	A	T	154860094	3	4	113	1	0	0	0	0	1	0	0	0	9645	72	3	4	1205	4	MME	3	154860094	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	31693659	154860094	43162336	19	13795											
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83984336	83984336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	COPS4	NM_016129	exon7	c.G823A	p.G275R	ATCAGAGGAAATC	.	99	53	130	0	.	226	A	83984336	G	A	83984336	3	1	113	1	0	0	0	0	1	0	0	0	3735	1001	35	3	849	3	COPS4	4	83984336	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		83984336	107169940	20	13796											
KLHL2	11275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166238988	166238988	+	Silent	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KLHL2	NM_001161521	exon14	c.A1632G	p.A544A	TTGTGCAGTTAAT	.	95	33	134	0	.	226	G	166238988	A	G	166238988	2	3	113	1	0	0	0	0	0	0	0	1	8374	175	7	2		2	KLHL2	4	166238988	Silent	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	82254652	166238988	24915288	21	13797											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14270940	14270940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TRIO	NM_007118	exon2	c.G164A	p.R55Q	GGTTTCGAAAAAA	.	70	43	85	0	.	562	A	14270940	G	A	14270940	3	1	113	1	0	0	0	0	1	0	0	0	16549	1058	37	1	170	1	TRIO	5	14270940	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		14270940	166644320	22	13798											
FBXL7	23194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928320	15928320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FBXL7	NM_012304	exon3	c.A449G	p.D150G	CCTGGGACCCGCG	.	56	22	50	2	.	228	G	15928320	A	G	15928320	3	3	113	1	0	0	0	0	1	0	0	0	5724	275	10	2	459	2	FBXL7	5	15928320	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	1657380	15928320	164986940	23	13799											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71493321	71493321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MAP1B	NM_005909	exon5	c.T4139A	p.M1380K	GCCCCATGGATGA	.	134	50	108	0	.	155	A	71493321	T	A	71493321	3	1	113	1	0	0	0	0	1	0	0	0	9228	1464	51	4	4157	4	MAP1B	5	71493321	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	55565001	71493321	109421939	24	13800											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128887587	128887587	+	Silent	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ADAMTS19	NM_133638	exon7	c.A1341C	p.P447P	TGAACCATGTGAT	.	105	36	76	0	.	295	C	128887587	A	C	128887587	2	2	113	1	0	0	0	0	0	0	0	1	264	204	8	5		5	ADAMTS19	5	128887587	Silent	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	57394266	128887587	52027673	25	13801											
IL4	3565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132009824	132009824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	IL4	NM_172348	exon1	c.G82C	p.D28H	AAGTGCGATATCA	.	66	30	63	0	.	90	C	132009824	G	C	132009824	3	2	113	1	0	0	0	0	1	0	0	0	7696	1058	37	4	84	4	IL4	5	132009824	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	3122237	132009824	48905436	26	13802											
PCDHA13	56136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140262349	140262349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PCDHA13	NM_031865	exon1	c.T496A	p.S166T	GTAAACTCGGCAT	.	139	70	144	0	.	75	A	140262349	T	A	140262349	3	1	113	1	0	0	0	0	1	0	0	0	11523	1551	54	4	498	4	PCDHA13	5	140262349	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	8252525	140262349	40652911	27	13803											
PCDHB4	56131	broad.mit.edu;bcgsc.ca	37	5	140502767	140502767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PCDHB4	NM_018938	exon1	c.T1187C	p.L396S	CAACTTTGAAGAA	.	112	50	88	2	.	93	C	140502767	T	C	140502767	3	2	113	1	0	0	0	0	1	0	0	0	11544	1821	63	2	1189	2	PCDHB4	5	140502767	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	240418	140502767	40412493	28	13804											
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140794859	140794859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_032090	exon1	c.G2117T	p.C706F	TCTCCTGCGTCTT	.	113	57	113	0	.	.	T	140794859	G	T	140794859	3	4	113	1	0	0	0	0	1	0	0	0	11551	1319	46	3	2119	3	PCDHGA10	5	140794859	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	292092	140794859	40120401	29	13805											
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176899177	176899177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DBN1	NM_080881	exon2	c.T35C	p.L12P	CTGGCCAGTGCTG	.	103	48	112	0	.	587	G	176899177	A	G	176899177	3	3	113	1	0	0	0	0	1	0	0	0	4252	188	7	2	1976	2	DBN1	5	176899177	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	36104318	176899177	4016083	30	13806											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38838323	38838323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DNAH8	NM_001206927	exon49	c.C6975A	p.N2325K	CTGGAACCTGAAA	.	56	36	48	0	.	615	A	38838323	C	A	38838323	3	1	113	1	0	0	0	0	1	0	0	0	4607	506	18	3	6502	3	DNAH8	6	38838323	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10		38838323	132276744	31	13807											
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56918222	56918222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KIAA1586	NM_020931	exon4	c.G925A	p.E309K	ATTATAGAAGAGA	.	78	44	127	0	.	44	A	56918222	G	A	56918222	3	1	113	1	0	0	0	0	1	0	0	0	8245	943	33	3	939	3	KIAA1586	6	56918222	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	18079899	56918222	114196845	32	13808											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65767551	65767551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	EYS	NM_001142800	exon13	c.A2093G	p.D698G	GGTTGGTCAATGC	.	241	150	257	0	.	660	C	65767551	T	C	65767551	3	2	113	1	0	0	0	0	1	0	0	0	5332	1667	58	2	7310	2	EYS	6	65767551	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	8849329	65767551	105347516	33	13809											
TBX18	9096	ucsc.edu;bcgsc.ca	37	6	85446614	85446614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TBX18	NM_001080508	exon8	c.C1613T	p.P538L	AGTTTGGGGGATG	.	130	77	153	2	.	73	A	85446614	G	A	85446614	3	1	113	1	0	0	0	0	1	0	0	0	15650	1232	43	3	214	3	TBX18	6	85446614	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	19679063	85446614	85668453	34	13810											
POPDC3	64208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105606476	105606476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	POPDC3	NM_022361	exon4	c.A745G	p.R249G	ATACCCTGTCATT	.	138	83	156	0	.	519	C	105606476	T	C	105606476	3	2	113	1	0	0	0	0	1	0	0	0	12256	1579	55	2	134	2	POPDC3	6	105606476	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	20159862	105606476	65508591	35	13811											
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130381199	130381199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	L3MBTL3	NM_032438	exon10	c.A778T	p.N260Y	CCATATAACAAAA	.	96	24	135	0	.	96	T	130381199	A	T	130381199	3	4	113	1	0	0	0	0	1	0	0	0	8593	362	13	4	808	4	L3MBTL3	6	130381199	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	24774723	130381199	40733868	36	13812											
NOX3	50508	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	155750073	155750073	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NOX3	NM_015718	exon9	c.G1000T	p.E334X	GCCACTCCAGCGA	.	72	51	127	1	.	91	A	155750073	C	A	155750073	4	1	113	1	0	0	0	0	0	1	0	0	10557	864	30	3	726	3	NOX3	6	155750073	Nonsense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	25368874	155750073	15364994	37	13813											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	20785063	20785063	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ABCB5	NM_001163941	exon26	c.3429+2T>A	.	CTGAGGTAAGAAA	.	72	37	64	0	.	158	A	20785063	T	A	20785063	5	1	113	1	0	0	0	0	0	0	1	0	44	1652	57	4	3570	4	ABCB5	7	20785063	Splice_Site	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10		20785063	138353600	38	13814											
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26233251	26233251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HNRNPA2B1	NM_031243	exon9	c.C821A	p.P274H	TATCCAGGTCCTC	.	82	5	78	0	.	70	T	26233251	G	T	26233251	3	4	113	1	0	0	0	0	1	0	0	0	7259	1000	35	3	252	3	HNRNPA2B1	7	26233251	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	5448188	26233251	132905412	39	13815											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31918700	31918700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PDE1C	NM_001191058	exon5	c.C514T	p.R172W	TCTGCCGCGTGAA	.	50	23	42	0	.	94	A	31918700	G	A	31918700	3	1	113	1	0	0	0	0	1	0	0	0	11635	1086	38	1	1626	1	PDE1C	7	31918700	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	5685449	31918700	127219963	40	13816											
CDHR3	222256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105662822	105662822	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CDHR3	NM_152750	exon14	c.T2004C	p.V668V	TCTTGTTGAGACA	.	190	87	203	0	.	23	C	105662822	T	C	105662822	2	2	113	1	0	0	0	0	0	0	0	1	3120	1799	63	2		2	CDHR3	7	105662822	Silent	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	73744122	105662822	53475841	41	13817											
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17921966	17921967	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ASAH1	NM_004315	exon6	c.505_506insA	p.G169fs	AATTACCTTTTTT	.	45	18	68	0	.	90	T	17921967	-	T	17921966	7	5	113	1	0	1	1	0	0	0	0	0	1006	695	24	0	766	0	ASAH1	8	17921966	Frame_Shift_Ins	INS	-	TCGA-ED-A66Y-01A-11D-A30V-10		17921966	128442056	42	13818											
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	36788612	36788612	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KCNU1	NM_001031836	exon25	c.G2880T	p.R960R	AAACCGGTGTAAG	.	149	63	146	0	.	23	T	36788612	G	T	36788612	2	4	113	1	0	0	0	0	0	0	0	1	8093	1248	44	3		3	KCNU1	8	36788612	Silent	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	18866646	36788612	109575410	43	13819											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5968170	5968170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KIAA2026	NM_001017969	exon3	c.G2061T	p.K687N	TTTTTTCTTTTTC	.	76	37	89	0	.	92	A	5968170	C	A	5968170	3	1	113	1	0	0	0	0	1	0	0	0	8270	912	32	3	4274	3	KIAA2026	9	5968170	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10		5968170	135245261	44	13820											
RORB	6096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	77286750	77286752	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RORB	NM_006914	exon9	c.1157_1159del	p.386_387del	TTCAGGAAAAAAT	.	292	120	248	0	.	229	-	77286752	AAA	-	77286750	7	5	113	1	0	1	0	1	0	0	0	0	13529	246	9	0	1191	0	RORB	9	77286750	In_Frame_Del	DEL	AAA	TCGA-ED-A66Y-01A-11D-A30V-10	71318580	77286750	63926681	45	13821											
ACTL7A	10881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111625276	111625276	+	Missense_Mutation	SNP	A	A	G	rs112558776	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ACTL7A	NM_006687	exon1	c.A674G	p.Y225C	TGTCCTACGTGGT	.	47	18	44	0	A|0.500;C|0.500	90	G	111625276	A	G	111625276	3	3	113	1	0	0	0	0	1	0	0	0	200	391	14	2	676	2	ACTL7A	9	111625276	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	34338526	111625276	29588155	46	13822											
TNC	3371	broad.mit.edu;bcgsc.ca	37	9	117810717	117810717	+	Missense_Mutation	SNP	G	G	T	rs148223175	byfrequency;alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TNC	NM_002160	exon16	c.C4674A	p.S1558R	TAGAAAGCTGTCA	.	73	5	49	0	G|1.000;A|0.000	517	T	117810717	G	T	117810717	3	4	113	1	0	0	0	0	1	0	0	0	16267	962	34	3	1983	3	TNC	9	117810717	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	6185441	117810717	23402714	47	13823											
VIM	7431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17277885	17277885	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	VIM	NM_003380	exon8	c.A1270T	p.R424W	AACCTGAGGGGTA	.	131	58	110	1	.	291	T	17277885	A	T	17277885	3	4	113	1	0	0	0	0	1	0	0	0	17163	295	11	4	1296	4	VIM	10	17277885	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10		17277885	118256862	48	13824											
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	29812533	29812533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SVIL	NM_021738	exon15	c.G3010A	p.A1004T	GGTTCGCCCGTTC	.	98	52	109	0	.	96	T	29812533	C	T	29812533	3	4	113	1	0	0	0	0	1	0	0	0	15418	739	26	3	3730	3	SVIL	10	29812533	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	12534648	29812533	105722214	49	13825											
CHST3	9469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73768075	73768075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CHST3	NM_004273	exon3	c.G1286A	p.R429H	AGTGGCGCTTCAG	.	76	37	66	1	.	90	A	73768075	G	A	73768075	3	1	113	1	0	0	0	0	1	0	0	0	3405	1087	38	1	1292	1	CHST3	10	73768075	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	43955542	73768075	61766672	50	13826											
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123276885	123276885	+	Silent	SNP	C	C	T	rs121918491		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FGFR2	NM_000141	exon8	c.G1032A	p.A344A	ATTACCCGCCAAG	.	46	41	78	0	.	2607	T	123276885	C	T	123276885	2	4	113	1	0	0	0	0	0	0	0	1	5866	639	23	1		1	FGFR2	10	123276885	Silent	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	49508810	123276885	12257862	51	13827											
OR5I1	10798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55703708	55703709	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	.	.	.	p.HL56QF	TTTGAAGGTGAGG	.	152	73	129	1	.	.	AT	55703709	GG	AT	55703708	3	1	113	1	0	0	0	0	1	0	0	0	11164	1000	35	3	778	3	OR5I1	11	55703708	Missense_Mutation	DNP	GG	TCGA-ED-A66Y-01A-11D-A30V-10		55703708	79302808	52	13828											
CD6	923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60774061	60774061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CD6	NM_006725	exon2	c.C65T	p.A22V	CTCCAGCCCCACC	.	36	13	45	0	.	227	T	60774061	C	T	60774061	3	4	113	1	0	0	0	0	1	0	0	0	3028	739	26	3	71	3	CD6	11	60774061	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	5070353	60774061	74232455	53	13829											
SCGB2A2	4250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62038372	62038372	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SCGB2A2	NM_002411	exon2	c.G75A	p.L25L	CTTATTGGAGAAT	.	90	38	62	0	.	91	A	62038372	G	A	62038372	2	1	113	1	0	0	0	0	0	0	0	1	13900	1339	47	3		3	SCGB2A2	11	62038372	Silent	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	1264311	62038372	72968144	54	13830											
LRTM2	654429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1943454	1943454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LRTM2	NM_001039029	exon5	c.C680T	p.A227V	AGCTTGCCTGCAC	.	31	16	27	0	.	135	T	1943454	C	T	1943454	3	4	113	1	0	0	0	0	1	0	0	0	9045	739	26	3	690	3	LRTM2	12	1943454	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10		1943454	131908441	55	13831											
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	19436617	19436617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PLEKHA5	NM_001256470	exon12	c.T1717C	p.S573P	GAAGTGTCTTCAC	.	78	33	73	0	.	227	C	19436617	T	C	19436617	3	2	113	1	0	0	0	0	1	0	0	0	12059	1667	58	2	1741	2	PLEKHA5	12	19436617	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	17493163	19436617	114415278	56	13832											
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56397423	56397423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SUOX	NM_000456	exon6	c.A250G	p.I84V	ACACACATATACA	.	71	25	97	0	.	90	G	56397423	A	G	56397423	3	3	113	1	0	0	0	0	1	0	0	0	15392	217	8	2	260	2	SUOX	12	56397423	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	36960806	56397423	77454472	57	13833											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85521764	85521764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LRRIQ1	NM_001079910	exon18	c.A4162G	p.I1388V	GAAAATATTGTGA	.	285	137	249	0	.	95	G	85521764	A	G	85521764	3	3	113	1	0	0	0	0	1	0	0	0	9029	449	16	2	4232	2	LRRIQ1	12	85521764	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	29124341	85521764	48330131	58	13834											
HSPH1	10808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	31715296	31715296	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HSPH1	NM_006644	exon13	c.T1817G	p.L606X	TTCCCTAACTGCC	.	106	52	96	0	.	90	C	31715296	A	C	31715296	4	2	113	1	0	0	0	0	0	1	0	0	7431	372	13	5	783	5	HSPH1	13	31715296	Nonsense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10		31715296	83454582	59	13835											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35806707	35806707	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NBEA	NM_015678	exon34	c.C5727T	p.F1909F	CCCATTCCTATCT	.	145	67	123	0	.	144	T	35806707	C	T	35806707	2	4	113	1	0	0	0	0	0	0	0	1	10187	854	30	3		3	NBEA	13	35806707	Silent	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	4091411	35806707	79363171	60	13836											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48951053	48951053	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	RB1,NS,carcinoma,0	RB1	NM_000321	exon13	c.1216-1G>A	.	CCTAAAGAACTGC	.	62	54	105	0	.	3784	A	48951053	G	A	48951053	5	1	113	1	0	0	0	0	0	0	1	0	13098	956	33	3	1265	3	RB1	13	48951053	Splice_Site	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	13144346	48951053	66218825	61	13837											
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86370519	86370519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SLITRK6	NM_032229	exon2	c.G125C	p.G42A	ATTGTGCCATCTT	.	74	61	131	0	.	137	G	86370519	C	G	86370519	3	3	113	1	0	0	0	0	1	0	0	0	14747	739	26	4	2404	4	SLITRK6	13	86370519	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	37419466	86370519	28799359	62	13838											
RNASE1	6035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21270068	21270068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RNASE1	NM_198235	exon3	c.T160C	p.C54R	GGTTACAGTAGGT	.	52	22	49	0	.	90	G	21270068	A	G	21270068	3	3	113	1	0	0	0	0	1	0	0	0	13399	188	7	2	314	2	RNASE1	14	21270068	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10		21270068	86079472	63	13839											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67147861	67147861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GPHN	NM_001024218	exon2	c.G101A	p.R34H	AAGACCGCAGTGG	.	92	47	93	0	.	228	A	67147861	G	A	67147861	3	1	113	1	0	0	0	0	1	0	0	0	6610	1087	38	1	107	1	GPHN	14	67147861	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	45877793	67147861	40201679	64	13840											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42052603	42052603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MGA	NM_001164273	exon20	c.G7274A	p.R2425H	ATTATCGCCGGAC	.	121	77	129	0	.	522	A	42052603	G	A	42052603	3	1	113	1	0	0	0	0	1	0	0	0	9540	1087	38	1	7348	1	MGA	15	42052603	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		42052603	60478789	65	13841											
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58074513	58074513	+	Missense_Mutation	SNP	A	A	G	rs147717123		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MMP15	NM_002428	exon5	c.A821G	p.N274S	ACCCCAATGCCAT	.	32	24	71	0	A|1.000;G|0.000	713	G	58074513	A	G	58074513	3	3	113	1	0	0	0	0	1	0	0	0	9654	101	4	2	839	2	MMP15	16	58074513	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10		58074513	32280240	66	13842											
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7798720	7798720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CHD3	NM_001005271	exon10	c.G1744A	p.A582T	CCTGTAGCAGTGC	.	61	32	88	0	.	228	A	7798720	G	A	7798720	3	1	113	1	0	0	0	0	1	0	0	0	3326	971	34	3	1886	3	CHD3	17	7798720	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		7798720	73396490	67	13843											
SEZ6	124925	ucsc.edu;bcgsc.ca	37	17	27309008	27309008	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SEZ6	NM_001098635	exon2	c.C105A	p.I35I	CTCCTCGATGCCT	.	35	4	30	0	.	90	T	27309008	G	T	27309008	2	4	113	1	0	0	0	0	0	0	0	1	14142	1048	37	1		1	SEZ6	17	27309008	Silent	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	19510288	27309008	53886202	68	13844											
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39595474	39595474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KRT38	NM_006771	exon3	c.T713A	p.L238H	CTCTTGAGGGAGA	.	28	12	55	0	.	92	T	39595474	A	T	39595474	3	4	113	1	0	0	0	0	1	0	0	0	8475	304	11	4	677	4	KRT38	17	39595474	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	12286466	39595474	41599736	69	13845											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	5419718	5419718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	EPB41L3	NM_012307	exon12	c.G1498T	p.E500X	TTCCCTCGTGCCG	.	39	23	42	0	.	95	A	5419718	C	A	5419718	4	1	113	1	0	0	0	0	0	1	0	0	5154	893	31	1	1809	1	EPB41L3	18	5419718	Nonsense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10		5419718	72657530	70	13846											
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10506763	10506763	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CDC37	NM_007065	exon2	c.G219A	p.V73V	CTCGGCCACCTCC	.	95	31	87	0	.	522	T	10506763	C	T	10506763	2	4	113	1	0	0	0	0	0	0	0	1	3068	581	21	3		3	CDC37	19	10506763	Silent	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10		10506763	48622220	71	13847											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11132515	11132515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SMARCA4	NM_003072	exon19	c.G2731A	p.G911S	CTGACGGGCACAC	.	58	20	51	0	.	1523	A	11132515	G	A	11132515	3	1	113	1	0	0	0	0	1	0	0	0	14770	1232	43	3	2801	3	SMARCA4	19	11132515	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	625752	11132515	47996468	72	13848											
ELAVL3	1995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11577461	11577461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ELAVL3	NM_032281	exon2	c.A191G	p.D64G	TCGATGTCGCCAA	.	87	44	67	0	.	92	C	11577461	T	C	11577461	3	2	113	1	0	0	0	0	1	0	0	0	5051	1667	58	2	936	2	ELAVL3	19	11577461	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	444946	11577461	47551522	73	13849											
OR10H4	126541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16059854	16059854	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	OR10H4	NM_001004465	exon1	c.A37T	p.N13Y	GAATTTAACCTCT	.	82	38	73	0	.	114	T	16059854	A	T	16059854	3	4	113	1	0	0	0	0	1	0	0	0	10908	362	13	4	39	4	OR10H4	19	16059854	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	4482393	16059854	43069129	74	13850											
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17091417	17091417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CPAMD8	NM_015692	exon14	c.G1616A	p.G539D	ATATTGCCCCGTG	.	89	40	89	0	.	141	T	17091417	C	T	17091417	3	4	113	1	0	0	0	0	1	0	0	0	3795	739	26	3	4298	3	CPAMD8	19	17091417	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	1031563	17091417	42037566	75	13851											
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35435350	35435350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ZNF30	NM_001099438	exon5	c.A1483G	p.S495G	ACTTTTAGTCGAG	.	64	31	79	0	.	24	G	35435350	A	G	35435350	3	3	113	1	0	0	0	0	1	0	0	0	17827	420	15	2	1497	2	ZNF30	19	35435350	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	18343933	35435350	23693633	76	13852											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56223263	56223263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NLRP9	NM_176820	exon8	c.A2746T	p.R916W	GGCTCCTCAGTGT	.	80	47	69	0	.	294	A	56223263	T	A	56223263	3	1	113	1	0	0	0	0	1	0	0	0	10484	1550	54	4	237	4	NLRP9	19	56223263	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	20787913	56223263	2905720	77	13853											
CTNNBL1	56259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	36431330	36431330	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CTNNBL1	NM_030877	exon11	c.G1093T	p.E365X	GGCCCCGAAGGCA	.	150	68	154	0	.	228	T	36431330	G	T	36431330	4	4	113	1	0	0	0	0	0	1	0	0	4018	1059	37	1	1135	1	CTNNBL1	20	36431330	Nonsense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		36431330	26594190	78	13854											
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60895866	60895866	+	Missense_Mutation	SNP	G	G	C	rs143165168	byfrequency;alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LAMA5	NM_005560	exon49	c.C6577G	p.R2193G	TGCCACGCAGTTG	.	141	48	171	1	G|1.000;A|0.000	93	C	60895866	G	C	60895866	3	2	113	1	0	0	0	0	1	0	0	0	8609	1087	38	4	4638	4	LAMA5	20	60895866	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	24464536	60895866	2129654	79	13855											
DONSON	29980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34958454	34958454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DONSON	NM_017613	exon3	c.C436A	p.P146T	AGGACGGAATATC	.	126	40	208	0	.	91	T	34958454	G	T	34958454	3	4	113	1	0	0	0	0	1	0	0	0	4706	1174	41	3	1296	3	DONSON	21	34958454	Missense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		34958454	13171441	80	13856											
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	47033858	47033858	+	Splice_Site	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GRAMD4	NM_015124	exon2	c.283+1G>C	.	TCTTACGTGAGTA	.	81	7	114	0	.	23	C	47033858	G	C	47033858	5	2	113	1	0	0	0	0	0	0	1	0	6752	1159	40	4	290	4	GRAMD4	22	47033858	Splice_Site	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10		47033858	4270708	81	13857											
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20181160	20181160	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RPS6KA3	NM_004586	exon20	c.1765-2A>T	.	AAAACCTAGAAAA	.	213	108	208	0	.	1504	A	20181160	T	A	20181160	5	1	113	1	0	0	0	0	0	0	1	0	13652	1536	53	4	475	4	RPS6KA3	23	20181160	Splice_Site	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10		20181160	135089400	82	13858											
TFE3	7030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48888982	48888982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TFE3	NM_006521	exon9	c.G1214A	p.R405H	TTGGAGCGCTGCT	.	75	41	80	0	.	658	T	48888982	C	T	48888982	3	4	113	1	0	0	0	0	1	0	0	0	15797	768	27	1	521	1	TFE3	23	48888982	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	28707822	48888982	106381578	83	13859											
NLGN3	54413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70387139	70387139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NLGN3	NM_181303	exon7	c.A1192C	p.N398H	TTCCTCAACTATG	.	171	85	184	1	.	131	C	70387139	A	C	70387139	3	2	113	1	0	0	0	0	1	0	0	0	10463	130	5	5	1214	5	NLGN3	23	70387139	Missense_Mutation	SNP	A	TCGA-ED-A66Y-01A-11D-A30V-10	21498157	70387139	84883421	84	13860											
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100104411	100104411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NOX1	NM_007052	exon11	c.A1301G	p.Y434C	TAGAAATAGATCT	.	130	57	129	0	.	131	C	100104411	T	C	100104411	3	2	113	1	0	0	0	0	1	0	0	0	10556	1406	49	2	405	2	NOX1	23	100104411	Missense_Mutation	SNP	T	TCGA-ED-A66Y-01A-11D-A30V-10	29717272	100104411	55166149	85	13861											
RAB33A	9363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	129306277	129306277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RAB33A	NM_004794	exon1	c.G241T	p.E81X	GAAATCGAGGGCG	.	48	17	61	0	.	227	T	129306277	G	T	129306277	4	4	113	1	0	0	0	0	0	1	0	0	12922	1059	37	1	243	1	RAB33A	23	129306277	Nonsense_Mutation	SNP	G	TCGA-ED-A66Y-01A-11D-A30V-10	29201866	129306277	25964283	86	13862											
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150912332	150912332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CNGA2	NM_005140	exon7	c.C1357T	p.R453C	AAAGTGCGCATCT	.	116	37	75	1	.	193	T	150912332	C	T	150912332	3	4	113	1	0	0	0	0	1	0	0	0	3597	768	27	1	1379	1	CNGA2	23	150912332	Missense_Mutation	SNP	C	TCGA-ED-A66Y-01A-11D-A30V-10	21606055	150912332	4358228	87	13863											
CREG2	200407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101971822	101971823	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	CREG2	NM_153836	exon3	c.618_619insA	p.N206fs	AACGATGTTTTTT	.	186	64	117	0	.	91	T	101971823	-	T	101971822	7	5	114	1	0	1	1	0	0	0	0	0	3865	1368	48	0	262	0	CREG2	2	101971822	Frame_Shift_Ins	INS	-	TCGA-ED-A7PX-01A-51D-A34Z-10		101971822	141227551	1	13864											
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231067440	231067440	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	SP110	NM_001185015	exon10	c.A921C	p.T307T	TGAGGCTGTCCCT	.	157	20	142	0	.	155	G	231067440	T	G	231067440	2	3	114	1	0	0	0	0	0	0	0	1	14961	1567	55	5		5	SP110	2	231067440	Silent	SNP	T	TCGA-ED-A7PX-01A-51D-A34Z-10	129095618	231067440	12131933	2	13865											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52436639	52436640	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	BAP1	NM_004656	exon16	c.2035_2036insT	p.I679fs	TGGAGATAAAGGT	.	67	35	84	0	.	1032	A	52436640	-	A	52436639	7	5	114	1	0	1	1	0	0	0	0	0	1311	1406	49	0	162	0	BAP1	3	52436639	Frame_Shift_Ins	INS	-	TCGA-ED-A7PX-01A-51D-A34Z-10		52436639	145585791	3	13866											
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8304197	8304197	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	HTRA3	NM_053044	exon7	c.G1059A	p.K353K	CTGGAAGAAGCGC	.	76	28	46	0	.	91	A	8304197	G	A	8304197	2	1	114	1	0	0	0	0	0	0	0	1	7455	933	33	3		3	HTRA3	4	8304197	Silent	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10		8304197	182850079	4	13867											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141543809	141543809	+	Missense_Mutation	SNP	G	G	A	rs199802386		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	TBC1D9	NM_015130	exon21	c.C3341T	p.P1114L	CTGGCCGGCAGGG	.	49	21	34	0	G|0.998;A|0.002	23	A	141543809	G	A	141543809	3	1	114	1	0	0	0	0	1	0	0	0	15624	1116	39	1	463	1	TBC1D9	4	141543809	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	133239612	141543809	49610467	5	13868											
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159790466	159790466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	FNIP2	NM_020840	exon13	c.C2678T	p.S893L	AAAGCTCAGATAG	.	51	22	35	0	.	68	T	159790466	C	T	159790466	3	4	114	1	0	0	0	0	1	0	0	0	5976	838	29	3	2728	3	FNIP2	4	159790466	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10	18246657	159790466	31363810	6	13869											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71757293	71757293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ZNF366	NM_152625	exon2	c.G31A	p.E11K	CATCCTCGTCTTT	.	75	27	58	0	.	91	T	71757293	C	T	71757293	3	4	114	1	0	0	0	0	1	0	0	0	17867	893	31	1	2219	1	ZNF366	5	71757293	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		71757293	109157967	7	13870											
PSD2	84249	broad.mit.edu;bcgsc.ca	37	5	139189306	139189306	+	Missense_Mutation	SNP	C	C	T	rs142293471		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	PSD2	NM_032289	exon2	c.C281T	p.A94V	ATTCAGCGGAGTC	.	137	67	77	2	C|1.000;T|0.000	91	T	139189306	C	T	139189306	3	4	114	1	0	0	0	0	1	0	0	0	12647	768	27	1	283	1	PSD2	5	139189306	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10	67432013	139189306	41725954	8	13871											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140563725	140563725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	PCDHB16	NM_020957	exon1	c.G1591A	p.V531M	TTCCGCGTGAGCG	.	35	5	27	0	.	92	A	140563725	G	A	140563725	3	1	114	1	0	0	0	0	1	0	0	0	11541	1145	40	1	1593	1	PCDHB16	5	140563725	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	1374419	140563725	40351535	9	13872											
RNF14	9604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141358344	141358344	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	RNF14	NM_001201365	exon5	c.A783G	p.Q261Q	GGTTCAATGCCTC	.	49	8	33	0	.	226	G	141358344	A	G	141358344	2	3	114	1	0	0	0	0	0	0	0	1	13443	98	4	2		2	RNF14	5	141358344	Silent	SNP	A	TCGA-ED-A7PX-01A-51D-A34Z-10	794619	141358344	39556916	10	13873											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153149816	153149816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	GRIA1	NM_001258021	exon13	c.T2141C	p.M714T	AGGGGATGATTCG	.	104	39	68	0	.	96	C	153149816	T	C	153149816	3	2	114	1	0	0	0	0	1	0	0	0	6767	1464	51	2	2161	2	GRIA1	5	153149816	Missense_Mutation	SNP	T	TCGA-ED-A7PX-01A-51D-A34Z-10	11791472	153149816	27765444	11	13874											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43172740	43172740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	CUL9	NM_015089	exon23	c.C4519G	p.H1507D	TATGAGCACTTGC	.	51	19	36	0	.	529	G	43172740	C	G	43172740	3	3	114	1	0	0	0	0	1	0	0	0	4061	710	25	4	4605	4	CUL9	6	43172740	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		43172740	127942327	12	13875											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4917455	4917455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	RADIL	NM_018059	exon2	c.C316A	p.Q106K	CGGCCTGCCTGGG	.	37	9	23	0	.	994	T	4917455	G	T	4917455	3	4	114	1	0	0	0	0	1	0	0	0	12997	1328	46	3	2967	3	RADIL	7	4917455	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10		4917455	154221208	13	13876											
KCNS2	3788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99440423	99440423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	KCNS2	NM_020697	exon2	c.C216A	p.D72E	CTTCGACCGCAAC	.	48	15	38	0	.	91	A	99440423	C	A	99440423	3	1	114	1	0	0	0	0	1	0	0	0	8089	506	18	3	218	3	KCNS2	8	99440423	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		99440423	46923599	14	13877											
APBA1	320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72071267	72071267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	APBA1	NM_001163	exon8	c.C1684T	p.R562W	GCATCCGCCGGCG	.	63	21	47	0	.	91	A	72071267	G	A	72071267	3	1	114	1	0	0	0	0	1	0	0	0	756	1086	38	1	853	1	APBA1	9	72071267	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10		72071267	69142164	15	13878											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135797282	135797282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	TSC1	NM_000368	exon7	c.C587T	p.P196L	TTGCAAGGGTACA	.	46	30	60	0	.	1906	A	135797282	G	A	135797282	3	1	114	1	0	0	0	0	1	0	0	0	16602	1000	35	3	2975	3	TSC1	9	135797282	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	63726015	135797282	5416149	16	13879											
OR51V1	283111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5221116	5221116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	OR51V1	NM_001004760	exon1	c.G815A	p.R272H	CCAAAACGGTGCA	.	76	31	34	0	.	69	T	5221116	C	T	5221116	3	4	114	1	0	0	0	0	1	0	0	0	11107	536	19	1	153	1	OR51V1	11	5221116	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		5221116	129785400	17	13880											
DRAP1	10589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65687843	65687843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	DRAP1	NM_006442	exon4	c.T239G	p.F80C	AGCAGTTTGACTT	.	42	9	35	0	.	90	G	65687843	T	G	65687843	3	3	114	1	0	0	0	0	1	0	0	0	4755	1841	64	5	253	5	DRAP1	11	65687843	Missense_Mutation	SNP	T	TCGA-ED-A7PX-01A-51D-A34Z-10	60466727	65687843	69318673	18	13881											
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56495713	56495713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ERBB3	NM_001982	exon28	c.G3903T	p.Q1301H	ACATCAGGCCCCC	.	55	25	39	0	.	1403	T	56495713	G	T	56495713	3	4	114	1	0	0	0	0	1	0	0	0	5208	991	35	3	4144	3	ERBB3	12	56495713	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10		56495713	77356182	19	13882											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64437335	64437335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	SRGAP1	NM_020762	exon6	c.G781A	p.D261N	ATTCATGATCTTT	.	223	44	106	0	.	653	A	64437335	G	A	64437335	3	1	114	1	0	0	0	0	1	0	0	0	15144	1290	45	3	803	3	SRGAP1	12	64437335	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	7941622	64437335	69414560	20	13883											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51196346	51196346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	NIN	NM_020921	exon29	c.G5973T	p.R1991S	CTGCTCCCTGGGC	.	105	56	115	0	.	229	A	51196346	C	A	51196346	3	1	114	1	0	0	0	0	1	0	0	0	10417	622	22	3	588	3	NIN	14	51196346	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		51196346	56153194	21	13884											
PRIMA1	145270	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	94245606	94245606	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	PRIMA1	NM_178013	exon3	c.C145T	p.R49X	CGTGTCGGCAGCT	.	28	16	22	0	.	154	A	94245606	G	A	94245606	4	1	114	1	0	0	0	0	0	1	0	0	12492	1124	39	1	328	1	PRIMA1	14	94245606	Nonsense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	43049260	94245606	13103934	22	13885											
JAG2	3714	hgsc.bcm.edu;broad.mit.edu	37	14	105612177	105612177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	JAG2	NM_002226	exon23	c.A2843G	p.E948G	CCGCACTCCCCCC	.	119	5	115	0	.	846	C	105612177	T	C	105612177	3	2	114	1	0	0	0	0	1	0	0	0	7935	1551	54	2	889	2	JAG2	14	105612177	Missense_Mutation	SNP	T	TCGA-ED-A7PX-01A-51D-A34Z-10	11366571	105612177	1737363	23	13886											
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86124170	86124170	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	AKAP13	NM_007200	exon7	c.A2871T	p.G957G	TCCTGGACAAGAT	.	56	17	59	0	.	258	T	86124170	A	T	86124170	2	4	114	1	0	0	0	0	0	0	0	1	449	262	10	4		4	AKAP13	15	86124170	Silent	SNP	A	TCGA-ED-A7PX-01A-51D-A34Z-10		86124170	16407222	24	13887	78	2									
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	86124171	86124171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	AKAP13	NM_007200	exon7	c.C2872T	p.Q958X	CCTGGACAAGATA	.	56	16	61	0	.	258	T	86124171	C	T	86124171	4	4	114	1	0	0	0	0	0	1	0	0	449	479	17	3	2894	3	AKAP13	15	86124171	Nonsense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10	1	86124171	16407221	25	13888	78	2									
ABCA3	21	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2369767	2369767	+	Missense_Mutation	SNP	C	C	T	rs199567944		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ABCA3	NM_001089	exon8	c.G688A	p.A230T	GTGTGGCGGCATC	.	89	12	64	1	C|0.999;T|0.001	1015	T	2369767	C	T	2369767	3	4	114	1	0	0	0	0	1	0	0	0	33	768	27	1	4530	1	ABCA3	16	2369767	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		2369767	87984986	26	13889											
FAM92B	339145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	85133752	85133752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	FAM92B	NM_198491	exon7	c.C746T	p.A249V	TGGCTGGCGAGAG	.	37	11	28	0	.	90	A	85133752	G	A	85133752	3	1	114	1	0	0	0	0	1	0	0	0	5653	1203	42	3	176	3	FAM92B	16	85133752	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	82763985	85133752	5221001	27	13890											
ANKRD11	29123	broad.mit.edu;mdanderson.org	37	16	89346082	89346082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ANKRD11	NM_001256183	exon9	c.C6868T	p.P2290S	CCTCGGGGCCGGC	.	15	8	8	0	.	139	A	89346082	G	A	89346082	3	1	114	1	0	0	0	0	1	0	0	0	639	1232	43	3	1143	3	ANKRD11	16	89346082	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	4212330	89346082	1008671	28	13891											
P2RX1	5023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3806509	3806509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	P2RX1	NM_002558	exon7	c.C734A	p.T245N	GCCAGGGTGCTGA	.	25	12	36	0	.	70	T	3806509	G	T	3806509	3	4	114	1	0	0	0	0	1	0	0	0	11339	1261	44	3	489	3	P2RX1	17	3806509	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10		3806509	77388701	29	13892											
ZNF550	162972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58067687	58067687	+	Silent	SNP	G	G	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ZNF550	.	.	.	.	CTCCCGGGTAAAG	.	84	19	61	0	.	90	C	58067687	G	C	58067687	2	2	114	1	0	0	0	0	0	0	0	1	17979	1219	43	4		4	ZNF550	19	58067687	Silent	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10		58067687	1061296	30	13893											
MCM8	84515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5935894	5935894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	MCM8	NM_032485	exon5	c.T483A	p.H161Q	AATACATCAGGTA	.	50	39	77	0	.	227	A	5935894	T	A	5935894	3	1	114	1	0	0	0	0	1	0	0	0	9393	1432	50	4	497	4	MCM8	20	5935894	Missense_Mutation	SNP	T	TCGA-ED-A7PX-01A-51D-A34Z-10		5935894	57089626	31	13894											
DEFB116	245930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	29891217	29891217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	DEFB116	NM_001037731	exon2	c.C107G	p.P36R	TTCCAAGGCTCTC	.	154	28	105	1	.	90	C	29891217	G	C	29891217	3	2	114	1	0	0	0	0	1	0	0	0	4405	1000	35	4	204	4	DEFB116	20	29891217	Missense_Mutation	SNP	G	TCGA-ED-A7PX-01A-51D-A34Z-10	23955323	29891217	33134303	32	13895											
BAGE3	85318	broad.mit.edu;bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_182481	exon3	c.G118A	p.D40N	GCACATCGCTGAA	.	161	13	154	1	C|0.750;T|0.250	.	T	11058322	C	T	11058322	3	4	114	1	0	0	0	0	1	0	0	0	1293	898	31	1	219	1	BAGE3	21	11058322	Missense_Mutation	SNP	C	TCGA-ED-A7PX-01A-51D-A34Z-10		11058322	37071573	33	13896											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	185897698	185897698	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HMCN1	NM_031935	exon10	c.T1451G	p.L484X	TGAACTTAGATAT	.	81	8	49	0	.	113	G	185897698	T	G	185897698	4	3	115	1	0	0	0	0	0	1	0	0	7220	1764	61	5	1489	5	HMCN1	1	185897698	Nonsense_Mutation	SNP	T	TCGA-ED-A7PY-01A-11D-A33Q-10		185897698	63352923	1	13897											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240286619	240286619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FMN2	NM_020066	exon2	c.G1756A	p.A586T	CAGAATGCCCAGA	.	95	82	43	0	.	145	A	240286619	G	A	240286619	3	1	115	1	0	0	0	0	1	0	0	0	5950	1319	46	3	1762	3	FMN2	1	240286619	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10	54388921	240286619	8964002	2	13898											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32641025	32641025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	BIRC6	NM_016252	exon10	c.T2666C	p.F889S	ATGGTTTTGAGAG	.	184	40	144	0	.	233	C	32641025	T	C	32641025	3	2	115	1	0	0	0	0	1	0	0	0	1438	1841	64	2	2704	2	BIRC6	2	32641025	Missense_Mutation	SNP	T	TCGA-ED-A7PY-01A-11D-A33Q-10		32641025	210558348	3	13899											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	51255367	51255367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	NRXN1	NM_004801	exon2	c.C45A	p.C15X	CGAGAGGCACAGA	.	17	9	16	0	.	92	T	51255367	G	T	51255367	4	4	115	1	0	0	0	0	0	1	0	0	10665	1195	42	3	4953	3	NRXN1	2	51255367	Nonsense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10	18614342	51255367	191944006	4	13900											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197184307	197184307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HECW2	NM_020760	exon9	c.G1307A	p.C436Y	TCAGAGCAGGTCG	.	85	29	87	0	.	668	T	197184307	C	T	197184307	3	4	115	1	0	0	0	0	1	0	0	0	7043	710	25	3	3495	3	HECW2	2	197184307	Missense_Mutation	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10	145928940	197184307	46015066	5	13901											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52551075	52551075	+	Missense_Mutation	SNP	G	G	A	rs144391932	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	STAB1	NM_015136	exon42	c.G4439A	p.R1480Q	GGCAGCGGACATG	.	130	59	135	0	G|1.000;A|0.000	139	A	52551075	G	A	52551075	3	1	115	1	0	0	0	0	1	0	0	0	15236	1116	39	1	4605	1	STAB1	3	52551075	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		52551075	145471355	6	13902											
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57130461	57130461	+	Missense_Mutation	SNP	C	C	T	rs146776354		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	IL17RD	NM_017563	exon13	c.G2180A	p.R727H	TAGCTGCGGCAAC	.	120	29	118	0	C|1.000;T|0.000	500	T	57130461	C	T	57130461	3	4	115	1	0	0	0	0	1	0	0	0	7642	768	27	1	43	1	IL17RD	3	57130461	Missense_Mutation	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10	4579386	57130461	140891969	7	13903											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130293202	130293202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	COL6A6	NM_001102608	exon7	c.A3380G	p.H1127R	TGAGACACAGAGG	.	183	74	171	0	.	76	G	130293202	A	G	130293202	3	3	115	1	0	0	0	0	1	0	0	0	3703	159	6	2	3406	2	COL6A6	3	130293202	Missense_Mutation	SNP	A	TCGA-ED-A7PY-01A-11D-A33Q-10	73162741	130293202	67729228	8	13904											
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185339323	185339323	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	IRF2	NM_002199	exon5	c.A409T	p.K137X	TTACCTTGATGTG	.	94	65	183	0	.	91	A	185339323	T	A	185339323	4	1	115	1	0	0	0	0	0	1	0	0	7828	1821	63	4	660	4	IRF2	4	185339323	Nonsense_Mutation	SNP	T	TCGA-ED-A7PY-01A-11D-A33Q-10		185339323	5814953	9	13905											
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33644858	33644858	+	Missense_Mutation	SNP	G	G	A	rs147513071	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ITPR3	NM_002224	exon27	c.G3514A	p.V1172I	CAGATCGTCAAGG	.	181	28	234	1	G|0.999;A|0.001	1085	A	33644858	G	A	33644858	3	1	115	1	0	0	0	0	1	0	0	0	7922	1145	40	1	3620	1	ITPR3	6	33644858	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		33644858	137470209	10	13906											
SNX14	57231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	86223594	86223594	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SNX14	NM_153816	exon26	c.C2577T	p.N859N	TTCAGTGTTTTCA	.	39	5	48	0	.	226	A	86223594	G	A	86223594	2	1	115	1	0	0	0	0	0	0	0	1	14885	1368	48	3		3	SNX14	6	86223594	Silent	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10	52578736	86223594	84891473	11	13907											
CLDN20	49861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155597357	155597357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CLDN20	NM_001001346	exon2	c.C504A	p.F168L	CGGATTCATTTCT	.	141	51	147	0	.	90	A	155597357	C	A	155597357	3	1	115	1	0	0	0	0	1	0	0	0	3482	825	29	3	506	3	CLDN20	6	155597357	Missense_Mutation	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10	69373763	155597357	15517710	12	13908											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91498042	91498042	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	KIF20B	NM_016195	exon20	c.G3324A	p.A1108A	GAGAGCGCTTTCA	.	95	36	102	0	.	93	A	91498042	G	A	91498042	2	1	115	1	0	0	0	0	0	0	0	1	8287	1074	38	1		1	KIF20B	10	91498042	Silent	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		91498042	44036705	13	13909											
ENTPD1	953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97626110	97626110	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ENTPD1	NM_001164178	exon10	c.G1539A	p.K513K	TCACAAGCCTTCA	.	175	70	184	1	.	93	A	97626110	G	A	97626110	2	1	115	1	0	0	0	0	0	0	0	1	5138	962	34	3		3	ENTPD1	10	97626110	Silent	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10	6128068	97626110	37908637	14	13910											
DCLRE1A	9937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115602174	115602174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DCLRE1A	NM_014881	exon6	c.G2593T	p.A865S	TTACAGCCTCAAA	.	98	38	92	0	.	228	A	115602174	C	A	115602174	3	1	115	1	0	0	0	0	1	0	0	0	4294	739	26	3	545	3	DCLRE1A	10	115602174	Missense_Mutation	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10	17976064	115602174	19932573	15	13911											
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869943	4869943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	OR51S1	NM_001004758	exon1	c.C496T	p.P166S	GCAGGGGCAGATG	.	93	46	82	0	.	72	A	4869943	G	A	4869943	3	1	115	1	0	0	0	0	1	0	0	0	11105	1203	42	3	478	3	OR51S1	11	4869943	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		4869943	130136573	16	13912											
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55322154	55322154	+	Silent	SNP	G	G	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	OR4C15	NM_001001920	exon1	c.G372C	p.A124A	GGATGCGTGCTTC	.	62	5	41	0	.	70	C	55322154	G	C	55322154	2	2	115	1	0	0	0	0	0	0	0	1	11048	1132	40	4		4	OR4C15	11	55322154	Silent	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10	50452211	55322154	79684362	17	13913											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56468353	56468353	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	NM_001013358	exon1	c.T490A	p.S164T	ACGTTTTCCTTTA	.	138	37	156	0	.	.	A	56468353	T	A	56468353	3	1	115	1	0	0	0	0	1	0	0	0	11252	1783	62	4	492	4	OR9G9	11	56468353	Missense_Mutation	SNP	T	TCGA-ED-A7PY-01A-11D-A33Q-10	1146199	56468353	78538163	18	13914											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103029663	103029663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DYNC2H1	NM_001377	exon28	c.T4285A	p.F1429I	CCAAGATTTTATT	.	167	60	214	0	.	68	A	103029663	T	A	103029663	3	1	115	1	0	0	0	0	1	0	0	0	4846	1493	52	4	4395	4	DYNC2H1	11	103029663	Missense_Mutation	SNP	T	TCGA-ED-A7PY-01A-11D-A33Q-10	46561310	103029663	31976853	19	13915											
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121476237	121476237	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SORL1	NM_003105	exon35	c.A4905G	p.A1635A	CAAGGCACACAAC	.	138	70	136	0	.	228	G	121476237	A	G	121476237	2	3	115	1	0	0	0	0	0	0	0	1	14934	146	6	2		2	SORL1	11	121476237	Silent	SNP	A	TCGA-ED-A7PY-01A-11D-A33Q-10	18446574	121476237	13530279	20	13916											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49443599	49443599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MLL2	NM_003482	exon11	c.C3772T	p.R1258W	AGAGCCGTAGGGA	.	146	62	193	0	.	612	A	49443599	G	A	49443599	3	1	115	1	0	0	0	0	1	0	0	0	9621	1144	40	1	13017	1	MLL2	12	49443599	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		49443599	84408296	21	13917											
ZFC3H1	196441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72026111	72026111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ZFC3H1	NM_144982	exon15	c.G3001T	p.V1001L	CTTCCACAACTGG	.	82	9	79	1	.	138	A	72026111	C	A	72026111	3	1	115	1	0	0	0	0	1	0	0	0	17630	478	17	3	3052	3	ZFC3H1	12	72026111	Missense_Mutation	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10	22582512	72026111	61825784	22	13918											
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58299287	58299287	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PCDH17	NM_001040429	exon4	c.G3339A	p.E1113E	CAGTGAGATGGGT	.	141	56	107	0	.	97	A	58299287	G	A	58299287	2	1	115	1	0	0	0	0	0	0	0	1	11512	933	33	3		3	PCDH17	13	58299287	Silent	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		58299287	56870591	23	13919											
PLEKHG3	26030	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65199611	65199611	+	Missense_Mutation	SNP	G	G	T	rs75568560	alternate_allele	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PLEKHG3	NM_015549	exon10	c.G1169T	p.R390L	GGCGCCGGCAATC	.	176	68	234	1	G|1.000;A|0.000	91	T	65199611	G	T	65199611	3	4	115	1	0	0	0	0	1	0	0	0	12070	1116	39	1	1203	1	PLEKHG3	14	65199611	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		65199611	42149929	24	13920											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101350343	101350343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	RTL1	NM_001134888	exon1	c.C783A	p.S261R	CAGGGGGCTGTTT	.	52	27	67	0	.	46	T	101350343	G	T	101350343	3	4	115	1	0	0	0	0	1	0	0	0	13724	1194	42	3	3297	3	RTL1	14	101350343	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10	36150732	101350343	5999197	25	13921											
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43027807	43027807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CDAN1	NM_138477	exon4	c.C844T	p.R282W	CTGTCCGGCTGGG	.	95	23	122	0	.	92	A	43027807	G	A	43027807	3	1	115	1	0	0	0	0	1	0	0	0	3054	1115	39	1	2939	1	CDAN1	15	43027807	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		43027807	59503585	26	13922											
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33932839	33932839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	AP2B1	NM_001282	exon4	c.G259T	p.A87S	ATCATGGCTGTAA	.	90	34	79	0	.	91	T	33932839	G	T	33932839	3	4	115	1	0	0	0	0	1	0	0	0	741	1203	42	3	269	3	AP2B1	17	33932839	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		33932839	47262371	27	13923											
ONECUT2	9480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55103728	55103728	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ONECUT2	NM_004852	exon1	c.C780T	p.P260P	CAGCCCCAACTTC	.	68	29	61	0	.	494	T	55103728	C	T	55103728	2	4	115	1	0	0	0	0	0	0	0	1	10869	581	21	3		3	ONECUT2	18	55103728	Silent	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10		55103728	22973520	28	13924											
ZNF69	7620	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	12015547	12015547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ZNF69	NM_021915	exon4	c.T293C	p.L98P	ACAGGCTGAACTT	.	121	11	149	0	.	91	C	12015547	T	C	12015547	3	2	115	1	0	0	0	0	1	0	0	0	18092	1580	55	2	307	2	ZNF69	19	12015547	Missense_Mutation	SNP	T	TCGA-ED-A7PY-01A-11D-A33Q-10		12015547	47113436	29	13925											
SCRT2	85508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	644968	644968	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SCRT2	NM_033129	exon2	c.C271T	p.L91L	CCGACAGGCTCGA	.	30	16	39	0	.	90	A	644968	G	A	644968	2	1	115	1	0	0	0	0	0	0	0	1	13942	991	35	3		3	SCRT2	20	644968	Silent	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		644968	62380552	30	13926											
ADSL	158	ucsc.edu;bcgsc.ca	37	22	40742604	40742604	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ADSL	NM_001123378	exon1	c.C42A	p.R14R	CTACCGCTCACCT	.	34	4	38	0	.	652	A	40742604	C	A	40742604	2	1	115	1	0	0	0	0	0	0	0	1	346	784	28	3		3	ADSL	22	40742604	Silent	SNP	C	TCGA-ED-A7PY-01A-11D-A33Q-10		40742604	10561962	31	13927											
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40511063	40511063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MED14	NM_004229	exon31	c.C4360A	p.P1454T	TCTATGGACGCCC	.	409	131	505	1	.	289	T	40511063	G	T	40511063	3	4	115	1	0	0	0	0	1	0	0	0	9432	1174	41	3	8	3	MED14	23	40511063	Missense_Mutation	SNP	G	TCGA-ED-A7PY-01A-11D-A33Q-10		40511063	114759497	32	13928											
MIB2	142678	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	1561031	1561031	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MIB2	NM_080875	exon8	c.A1315T	p.K439X	CTCACCAAGGTGC	.	76	41	71	0	.	90	T	1561031	A	T	1561031	4	4	116	1	0	0	0	0	0	1	0	0	9567	131	5	4	1345	4	MIB2	1	1561031	Nonsense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		1561031	247689590	1	13929											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22083087	22083087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	USP48	NM_001032730	exon3	c.A364T	p.S122C	AAGTGCTTGGACA	.	314	153	299	0	.	659	A	22083087	T	A	22083087	3	1	116	1	0	0	0	0	1	0	0	0	17076	1609	56	4	2851	4	USP48	1	22083087	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	20522056	22083087	227167534	2	13930											
C1orf63	57035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25571745	25571745	+	Silent	SNP	G	G	A	rs147790749		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C1orf63	NM_020317	exon3	c.C568T	p.L190L	TTCCTAGAGCTTT	.	65	19	75	0	G|1.000;A|0.000	91	A	25571745	G	A	25571745	2	1	116	1	0	0	0	0	0	0	0	1	2053	933	33	3		3	C1orf63	1	25571745	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	3488658	25571745	223678876	3	13931											
TMEM57	55219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25810611	25810611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TMEM57	NM_018202	exon7	c.G1159A	p.E387K	AGGCTGGAACAAG	.	267	110	265	1	.	22	A	25810611	G	A	25810611	3	1	116	1	0	0	0	0	1	0	0	0	16181	1175	41	3	1185	3	TMEM57	1	25810611	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	238866	25810611	223440010	4	13932											
SLC30A2	7780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26365755	26365755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC30A2	NM_001004434	exon8	c.A1015T	p.S339C	GGCGGCTGCTGGC	.	78	41	74	0	.	90	A	26365755	T	A	26365755	3	1	116	1	0	0	0	0	1	0	0	0	14555	1580	55	4	107	4	SLC30A2	1	26365755	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	555144	26365755	222884866	5	13933											
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	32157244	32157244	+	Splice_Site	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	COL16A1	NM_001856	exon19	c.1258-1G>T	.	CCGGCCCTGTGGG	.	193	87	227	1	.	98	A	32157244	C	A	32157244	5	1	116	1	0	0	0	0	0	0	1	0	3673	695	24	3	3773	3	COL16A1	1	32157244	Splice_Site	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	5791489	32157244	217093377	6	13934											
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36904373	36904373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OSCP1	NM_145047	exon2	c.A251T	p.Q84L	CTGGCCTGGTTCA	.	40	12	39	0	.	4	A	36904373	T	A	36904373	3	1	116	1	0	0	0	0	1	0	0	0	11286	1580	55	4	1084	4	OSCP1	1	36904373	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4747129	36904373	212346248	7	13935											
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38230698	38230698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EPHA10	NM_001099439	exon1	c.T41A	p.L14H	CGGCAGAGGAAGA	.	40	24	47	0	.	1246	T	38230698	A	T	38230698	3	4	116	1	0	0	0	0	1	0	0	0	5166	304	11	4	3091	4	EPHA10	1	38230698	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1326325	38230698	211019923	8	13936											
YBX1	4904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43162928	43162928	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	YBX1	NM_004559	exon6	c.C735T	p.F245F	ACGATTCCGCAGG	.	179	57	220	0	.	95	T	43162928	C	T	43162928	2	4	116	1	0	0	0	0	0	0	0	1	17466	854	30	3		3	YBX1	1	43162928	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	4932230	43162928	206087693	9	13937											
FAM73A	374986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	78325806	78325806	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FAM73A	NM_001270384	exon11	c.C1270T	p.R424X	AAAGCACGAAAGG	.	99	35	120	0	.	91	T	78325806	C	T	78325806	4	4	116	1	0	0	0	0	0	1	0	0	5617	528	19	1	1312	1	FAM73A	1	78325806	Nonsense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	35162878	78325806	170924815	10	13938											
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85403666	85403666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MCOLN2	NM_153259	exon10	c.A1210T	p.N404Y	TTACATTATATGC	.	369	152	377	0	.	94	A	85403666	T	A	85403666	3	1	116	1	0	0	0	0	1	0	0	0	9396	1754	61	4	510	4	MCOLN2	1	85403666	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	7077860	85403666	163846955	11	13939											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94548999	94548999	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCA4	NM_000350	exon8	c.769-2A>T	.	GGAAGCTGTAATT	.	55	6	35	0	.	162	A	94548999	T	A	94548999	5	1	116	1	0	0	0	0	0	0	1	0	34	1594	55	4	6230	4	ABCA4	1	94548999	Splice_Site	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	9145333	94548999	154701622	12	13940											
LPPR5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99418684	99418684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001037317	exon3	c.G563T	p.R188L	GTTTTTCGGGCTC	.	90	40	90	0	.	.	A	99418684	C	A	99418684	3	1	116	1	0	0	0	0	1	0	0	0	8928	884	31	1	418	1	LPPR5	1	99418684	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	4869685	99418684	149831937	13	13941											
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	102270187	102270187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OLFM3	NM_058170	exon6	c.C984A	p.D328E	CATTAGGTCGATG	.	178	89	133	0	.	93	T	102270187	G	T	102270187	3	4	116	1	0	0	0	0	1	0	0	0	10854	1252	44	3	396	3	OLFM3	1	102270187	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	2851503	102270187	146980434	14	13942											
CELSR2	1952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109801478	109801478	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CELSR2	NM_001408	exon2	c.G3735A	p.S1245S	CGTGTCGGTGCTG	.	70	17	79	1	.	526	A	109801478	G	A	109801478	2	1	116	1	0	0	0	0	0	0	0	1	3222	1103	39	1		1	CELSR2	1	109801478	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	7531291	109801478	139449143	15	13943											
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	120462971	120462971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NOTCH2	NM_024408	exon30	c.G5360A	p.R1787Q	CATGGCCGTCGAT	.	114	7	130	0	.	1441	T	120462971	C	T	120462971	3	4	116	1	0	0	0	0	1	0	0	0	10548	652	23	1	2075	1	NOTCH2	1	120462971	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	10661493	120462971	128787650	16	13944											
GJA5	2702	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	147230478	147230478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GJA5	NM_005266	exon2	c.A869G	p.Q290R	TTTTGTTGGGAGG	.	192	27	110	0	.	91	C	147230478	T	C	147230478	3	2	116	1	0	0	0	0	1	0	0	0	6404	1812	63	2	211	2	GJA5	1	147230478	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	26767507	147230478	102020143	17	13945											
VPS45	11311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150054960	150054960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	VPS45	NM_007259	exon10	c.C1097T	p.A366V	CTAGTGCTCTCCA	.	178	121	115	0	.	91	T	150054960	C	T	150054960	3	4	116	1	0	0	0	0	1	0	0	0	17208	797	28	3	1135	3	VPS45	1	150054960	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	2824482	150054960	99195661	18	13946											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153924016	153924016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CRTC2	NM_181715	exon11	c.C1124A	p.S375Y	AAGGAGGAGGCAG	.	55	37	27	0	.	228	T	153924016	G	T	153924016	3	4	116	1	0	0	0	0	1	0	0	0	3900	1174	41	3	973	3	CRTC2	1	153924016	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	3869056	153924016	95326605	19	13947											
UBE2Q1	55585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154527989	154527989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	UBE2Q1	NM_017582	exon3	c.G452A	p.R151K	ATGATCCTCTTCA	.	99	21	70	0	.	226	T	154527989	C	T	154527989	3	4	116	1	0	0	0	0	1	0	0	0	16866	681	24	3	860	3	UBE2Q1	1	154527989	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	603973	154527989	94722632	20	13948											
DCST1	149095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155023119	155023119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DCST1	NM_152494	exon17	c.C1896A	p.H632Q	CCTGCACCGCGGC	.	27	10	19	0	.	92	A	155023119	C	A	155023119	3	1	116	1	0	0	0	0	1	0	0	0	4302	506	18	3	1958	3	DCST1	1	155023119	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	495130	155023119	94227502	21	13949											
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159043068	159043068	+	Silent	SNP	A	A	G	rs145394745		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AIM2	NM_004833	exon2	c.T222C	p.Y74Y	AAGCATATAATTC	.	228	82	168	0	A|1.000;G|0.000	93	G	159043068	A	G	159043068	2	3	116	1	0	0	0	0	0	0	0	1	432	456	16	2		2	AIM2	1	159043068	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4019949	159043068	90207553	22	13950											
NCSTN	23385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160323960	160323960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NCSTN	NM_015331	exon11	c.T1232G	p.V411G	CTGCTGTCATCCT	.	145	39	131	0	.	658	G	160323960	T	G	160323960	3	3	116	1	0	0	0	0	1	0	0	0	10241	1667	58	5	1274	5	NCSTN	1	160323960	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1280892	160323960	88926661	23	13951											
ATF6	22926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161832997	161832997	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ATF6	NM_007348	exon14	c.A1614T	p.S538S	GAACTCAGGGAGT	.	225	65	172	0	.	93	T	161832997	A	T	161832997	2	4	116	1	0	0	0	0	0	0	0	1	1084	175	7	4		4	ATF6	1	161832997	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1509037	161832997	87417624	24	13952											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176915125	176915125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ASTN1	NM_004319	exon13	c.T2186C	p.F729S	CCAAAGAACATCT	.	144	39	116	0	.	319	G	176915125	A	G	176915125	3	3	116	1	0	0	0	0	1	0	0	0	1064	246	9	2	1746	2	ASTN1	1	176915125	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	15082128	176915125	72335496	25	13953											
RGS16	6004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182569551	182569551	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGS16	NM_002928	exon5	c.T485A	p.L162Q	TCCATCAGGGTAC	.	73	21	75	0	.	227	T	182569551	A	T	182569551	3	4	116	1	0	0	0	0	1	0	0	0	13298	188	7	4	127	4	RGS16	1	182569551	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	5654426	182569551	66681070	26	13954											
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215345508	215345508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNK2	NM_001017425	exon5	c.T805A	p.F269I	ATTGGATTTGGTG	.	158	22	107	0	.	90	A	215345508	T	A	215345508	3	1	116	1	0	0	0	0	1	0	0	0	8066	1493	52	4	866	4	KCNK2	1	215345508	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	32775957	215345508	33905113	27	13955											
C1orf35	79169	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	228290668	228290668	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C1orf35	NM_024319	exon2	c.G177T	p.A59A	CGGGCCCGCGCAT	.	27	18	14	0	.	90	A	228290668	C	A	228290668	2	1	116	1	0	0	0	0	0	0	0	1	2038	639	23	1		1	C1orf35	1	228290668	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	12945160	228290668	20959953	28	13956											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232144628	232144628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DISC1	NM_001164537	exon12	c.C2236A	p.L746M	GGAAGCCTGTCTG	.	145	22	102	0	.	91	A	232144628	C	A	232144628	3	1	116	1	0	0	0	0	1	0	0	0	4538	680	24	3	2918	3	DISC1	1	232144628	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	3853960	232144628	17105993	29	13957											
MTR	4548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237025590	237025590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MTR	NM_000254	exon21	c.A2251T	p.M751L	CCTTTCATGGAAA	.	98	25	87	0	.	92	T	237025590	A	T	237025590	3	4	116	1	0	0	0	0	1	0	0	0	9958	217	8	4	2333	4	MTR	1	237025590	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4880962	237025590	12225031	30	13958											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245851297	245851297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KIF26B	NM_018012	exon12	c.G5012T	p.R1671M	TGGGCAGGGCGAC	.	73	38	64	0	.	25	T	245851297	G	T	245851297	3	4	116	1	0	0	0	0	1	0	0	0	8295	1000	35	3	5058	3	KIF26B	1	245851297	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	8825707	245851297	3399324	31	13959											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247013752	247013752	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AHCTF1	NM_015446	exon33	c.A5583T	p.P1861P	AACTGCTGGTTCC	.	317	175	214	0	.	97	A	247013752	T	A	247013752	2	1	116	1	0	0	0	0	0	0	0	1	408	1567	55	4		4	AHCTF1	1	247013752	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1162455	247013752	2236869	32	13960											
OR2L3	391192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248224411	248224411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR2L3	NM_001004687	exon1	c.T428C	p.M143T	TGCTGATGATAAC	.	117	29	67	0	.	68	C	248224411	T	C	248224411	3	2	116	1	0	0	0	0	1	0	0	0	11008	1464	51	2	430	2	OR2L3	1	248224411	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1210659	248224411	1026210	33	13961											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1094065	1094065	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SNTG2	NM_018968	exon4	c.C294T	p.V98V	CCCTGTCGTCATA	.	156	36	180	0	.	136	T	1094065	C	T	1094065	2	4	116	1	0	0	0	0	0	0	0	1	14875	871	31	1		1	SNTG2	2	1094065	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10		1094065	242105308	34	13962											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926446	1926446	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MYT1L	NM_015025	exon10	c.G1095A	p.E365E	GAAGTCCTCTTCT	.	69	17	96	0	.	95	T	1926446	C	T	1926446	2	4	116	1	0	0	0	0	0	0	0	1	10107	680	24	3		3	MYT1L	2	1926446	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	832381	1926446	241272927	35	13963											
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	17896176	17896176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SMC6	NM_001142286	exon16	c.C1682T	p.P561L	ATTATCGGTGGCC	.	106	9	100	0	.	292	A	17896176	G	A	17896176	3	1	116	1	0	0	0	0	1	0	0	0	14787	1116	39	1	1645	1	SMC6	2	17896176	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	15969730	17896176	225303197	36	13964											
SLC30A3	7781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27480785	27480785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC30A3	NM_003459	exon4	c.G566T	p.C189F	TTGGCACAGACTG	.	127	33	137	0	.	90	A	27480785	C	A	27480785	3	1	116	1	0	0	0	0	1	0	0	0	14556	478	17	3	620	3	SLC30A3	2	27480785	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	9584609	27480785	215718588	37	13965											
SRD5A2	6716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31758776	31758776	+	RNA	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	.	.	.	.	AGTGCCTCTGAGA	.	43	20	77	0	.	.	A	31758776	T	A	31758776	1	1	116	0	1	0	0	0	0	0	0	0	15138	1548	54	4		4	SRD5A2	2	31758776	RNA	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4277991	31758776	211440597	38	13966											
SPAST	6683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32341205	32341205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SPAST	NM_014946	exon7	c.T1022A	p.F341Y	TTAAATTTGATGA	.	80	29	95	0	.	153	A	32341205	T	A	32341205	3	1	116	1	0	0	0	0	1	0	0	0	14996	1841	64	4	1048	4	SPAST	2	32341205	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	582429	32341205	210858168	39	13967											
STON1-GTF2A1L	286749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48848041	48848041	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	STON1-GTF2A1L	NM_001198594	exon3	c.C2185G	p.L729V	CGGAATCTATTTG	.	52	22	85	0	.	27	G	48848041	C	G	48848041	3	3	116	1	0	0	0	0	1	0	0	0	15316	912	32	4	2195	4	STON1-GTF2A1L	2	48848041	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	16506836	48848041	194351332	40	13968											
CNRIP1	25927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	68544310	68544310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CNRIP1	NM_001111101	exon2	c.A309T	p.Q103H	GATGGGTTGCCGT	.	111	66	188	0	.	69	A	68544310	T	A	68544310	3	1	116	1	0	0	0	0	1	0	0	0	3633	1722	60	4	254	4	CNRIP1	2	68544310	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	19696269	68544310	174655063	41	13969											
RGPD4	285190	broad.mit.edu;bcgsc.ca	37	2	108487504	108487504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGPD4	NM_182588	exon20	c.C3044A	p.A1015E	ATAAAGCAAACAC	.	229	75	279	0	.	2	A	108487504	C	A	108487504	3	1	116	1	0	0	0	0	1	0	0	0	13288	710	25	3	3122	3	RGPD4	2	108487504	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	39943194	108487504	134711869	42	13970											
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113067546	113067546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZC3H6	NM_198581	exon4	c.A421T	p.S141C	GAGTACAGCACCT	.	252	83	278	0	.	93	T	113067546	A	T	113067546	3	4	116	1	0	0	0	0	1	0	0	0	17568	188	7	4	435	4	ZC3H6	2	113067546	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4580042	113067546	130131827	43	13971											
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166535809	166535809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CSRNP3	NM_001172173	exon7	c.T1304A	p.L435Q	CAACTCTGTATTA	.	56	32	103	0	.	157	A	166535809	T	A	166535809	3	1	116	1	0	0	0	0	1	0	0	0	3965	1580	55	4	1318	4	CSRNP3	2	166535809	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	53468263	166535809	76663564	44	13972											
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172666177	172666177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC25A12	NM_003705	exon13	c.A1244T	p.D415V	AATTTGTCCCGAA	.	165	33	213	0	.	90	A	172666177	T	A	172666177	3	1	116	1	0	0	0	0	1	0	0	0	14474	1667	58	4	816	4	SLC25A12	2	172666177	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	6130368	172666177	70533196	45	13973											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179407911	179407911	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTN	NM_001267550	exon347	c.T96789A	p.T32263T	AGTAACAGTGTGC	.	73	41	76	0	.	636	T	179407911	A	T	179407911	2	4	116	1	0	0	0	0	0	0	0	1	16732	175	7	4		4	TTN	2	179407911	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	6741734	179407911	63791462	46	13974											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179594820	179594820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTN	NM_001267550	exon62	c.G18307A	p.E6103K	CCAGACCTTTTAC	.	34	12	50	0	.	636	T	179594820	C	T	179594820	3	4	116	1	0	0	0	0	1	0	0	0	16732	695	24	3	86426	3	TTN	2	179594820	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	186909	179594820	63604553	47	13975											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179611653	179611653	+	Silent	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTN	NM_133379	exon46	c.T15474G	p.A5158A	TTCATAAGCTGAA	.	78	26	80	0	.	636	C	179611653	A	C	179611653	2	2	116	1	0	0	0	0	0	0	0	1	16732	59	3	5		5	TTN	2	179611653	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	16833	179611653	63587720	48	13976											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179825979	179825979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CCDC141	NM_173648	exon5	c.A758T	p.Q253L	TCCCACTGACATA	.	100	60	122	0	.	78	A	179825979	T	A	179825979	3	1	116	1	0	0	0	0	1	0	0	0	2775	1595	55	4		4	CCDC141	2	179825979	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	214326	179825979	63373394	49	13977											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189861938	189861938	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	COL3A1	NM_000090	exon25	c.C1809A	p.G603G	ACCTGGCCCTCAG	.	84	39	121	0	.	581	A	189861938	C	A	189861938	2	1	116	1	0	0	0	0	0	0	0	1	3688	726	26	3		3	COL3A1	2	189861938	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	10035959	189861938	53337435	50	13978											
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196765124	196765124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DNAH7	NM_018897	exon28	c.T4430A	p.L1477Q	ACAGACAGTGGTC	.	131	45	184	1	.	102	T	196765124	A	T	196765124	3	4	116	1	0	0	0	0	1	0	0	0	4606	188	7	4	7796	4	DNAH7	2	196765124	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	6903186	196765124	46434249	51	13979											
BMPR2	659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203379609	203379609	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BMPR2	NM_001204	exon5	c.530-2A>T	.	TCTTATAGGAGAC	.	60	19	59	0	.	1003	T	203379609	A	T	203379609	5	4	116	1	0	0	0	0	0	0	1	0	1471	434	15	4	546	4	BMPR2	2	203379609	Splice_Site	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	6614485	203379609	39819764	52	13980											
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207429764	207429764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ADAM23	NM_003812	exon14	c.T1366A	p.W456R	GAATCCTGGGGTG	.	49	23	73	0	.	228	A	207429764	T	A	207429764	3	1	116	1	0	0	0	0	1	0	0	0	245	1580	55	4	1420	4	ADAM23	2	207429764	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4050155	207429764	35769609	53	13981											
STK36	27148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219553490	219553490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	STK36	NM_015690	exon12	c.C1451T	p.S484F	TTCTCTCCAGCTG	.	126	40	134	0	.	1004	T	219553490	C	T	219553490	3	4	116	1	0	0	0	0	1	0	0	0	15301	855	30	3	1493	3	STK36	2	219553490	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	12123726	219553490	23645883	54	13982											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220341676	220341676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SPEG	NM_005876	exon19	c.A4532T	p.K1511I	AGGGAAAACCACT	.	38	10	70	0	.	383	T	220341676	A	T	220341676	3	4	116	1	0	0	0	0	1	0	0	0	15035	14	1	4	4618	4	SPEG	2	220341676	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	788186	220341676	22857697	55	13983											
INHA	3623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220439764	220439764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	INHA	NM_002191	exon2	c.C617A	p.S206X	CCTGCTCAGCCCG	.	38	14	66	0	.	91	A	220439764	C	A	220439764	4	1	116	1	0	0	0	0	0	1	0	0	7740	838	29	3	623	3	INHA	2	220439764	Nonsense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	98088	220439764	22759609	56	13984											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225702538	225702538	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DOCK10	NM_014689	exon25	c.G2791C	p.D931H	CAATGTCGGTCAG	.	58	22	57	0	.	92	G	225702538	C	G	225702538	3	3	116	1	0	0	0	0	1	0	0	0	4685	884	31	4	3897	4	DOCK10	2	225702538	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	5262774	225702538	17496835	57	13985											
DNER	92737	broad.mit.edu;bcgsc.ca	37	2	230456360	230456360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DNER	NM_139072	exon2	c.C521A	p.T174K	GGCAGTGTCACCG	.	104	6	155	1	.	524	T	230456360	G	T	230456360	3	4	116	1	0	0	0	0	1	0	0	0	4667	1377	48	3	1740	3	DNER	2	230456360	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	4753822	230456360	12743013	58	13986											
B3GNT7	93010	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	232263636	232263636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	B3GNT7	NM_145236	exon2	c.A1206T	p.X402C	GCTCTGACCCCAG	.	8	6	11	0	.	68	T	232263636	A	T	232263636	3	4	116	1	0	0	0	0	1	0	0	0	1262	288	10	4	1212	4	B3GNT7	2	232263636	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1807276	232263636	10935737	59	13987											
DIS3L2	129563	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232894736	232894736	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DIS3L2	NM_001257282	exon5	c.A312G	p.R104R	TAATAGAGCCTTA	.	93	34	162	1	.	136	G	232894736	A	G	232894736	2	3	116	1	0	0	0	0	0	0	0	1	4537	301	11	2		2	DIS3L2	2	232894736	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	631100	232894736	10304637	60	13988											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	114	106	182	0	.	24361	G	41266098	A	G	41266098	3	3	116	1	0	0	0	0	1	0	0	0	4016	275	10	2	101	2	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		41266098	156756332	61	13989											
CACNA2D2	9254	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50418547	50418547	+	Silent	SNP	G	G	A	rs56287038	byfrequency;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CACNA2D2	NM_001174051	exon7	c.C663T	p.I221I	ATTGAGGATGACA	.	56	18	81	0	G|0.887;T|0.113	278	A	50418547	G	A	50418547	2	1	116	1	0	0	0	0	0	0	0	1	2549	1164	41	3		3	CACNA2D2	3	50418547	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	9152449	50418547	147603883	62	13990											
IL17RD	54756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57135268	57135268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IL17RD	NM_017563	exon11	c.A1103C	p.Q368P	TGATTCTGGCCAT	.	81	72	68	1	.	500	G	57135268	T	G	57135268	3	3	116	1	0	0	0	0	1	0	0	0	7642	1580	55	5	1128	5	IL17RD	3	57135268	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	6716721	57135268	140887162	63	13991											
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97868527	97868527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR5H14	NM_001005514	exon1	c.C298A	p.Q100K	AAGATACAGTTGT	.	182	26	165	0	.	91	A	97868527	C	A	97868527	3	1	116	1	0	0	0	0	1	0	0	0	11160	479	17	3	300	3	OR5H14	3	97868527	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	40733259	97868527	100153903	64	13992											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108698446	108698446	+	Missense_Mutation	SNP	C	C	A	rs201675482	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MORC1	NM_014429	exon24	c.G2393T	p.G798V	CAACTGCCACTCA	.	102	24	124	0	C|0.999;T|0.000	98	A	108698446	C	A	108698446	3	1	116	1	0	0	0	0	1	0	0	0	9701	739	26	3	581	3	MORC1	3	108698446	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	10829919	108698446	89323984	65	13993											
CD96	10225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111342600	111342600	+	Splice_Site	SNP	G	G	T	rs77738677	byfrequency;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CD96	NM_005816	exon9	c.1181-1G>T	.	AAAATAGGATATC	.	304	108	284	0	G|0.995;A|0.005	93	T	111342600	G	T	111342600	5	4	116	1	0	0	0	0	0	0	1	0	3048	1014	35	3	1266	3	CD96	3	111342600	Splice_Site	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	2644154	111342600	86679830	66	13994											
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZBTB20	NM_001164342	exon5	c.2075delC	p.P692fs	CCTGCAGGGGGGG	.	70	22	70	0	.	95	-	114058003	G	-	114058003	7	5	116	1	0	1	0	1	0	0	0	0	17526	1000	35	0	154	0	ZBTB20	3	114058003	Frame_Shift_Del	DEL	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	2715403	114058003	83964427	67	13995											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124437851	124437851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KALRN	NM_001024660	exon60	c.C8495T	p.S2832L	AGATCTCGGGTCA	.	116	18	102	0	.	738	T	124437851	C	T	124437851	3	4	116	1	0	0	0	0	1	0	0	0	7975	893	31	1	8889	1	KALRN	3	124437851	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	10379848	124437851	73584579	68	13996											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124437876	124437876	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KALRN	NM_001024660	exon60	c.G8520A	p.L2840L	CCACCTGCTGGGG	.	119	20	97	0	.	738	A	124437876	G	A	124437876	2	1	116	1	0	0	0	0	0	0	0	1	7975	1306	46	3		3	KALRN	3	124437876	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	25	124437876	73584554	69	13997											
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124909320	124909320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	SLC12A8_ENST00000393469,NS,carcinoma,0	SLC12A8	NM_024628	exon3	c.A97T	p.M33L	CCCACATGAACAG	.	334	60	304	0	.	22	A	124909320	T	A	124909320	3	1	116	1	0	0	0	0	1	0	0	0	14389	1464	51	4	2095	4	SLC12A8	3	124909320	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	471444	124909320	73113110	70	13998											
NEK11	79858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130884346	130884346	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NEK11	NM_024800	exon12	c.A1159T	p.S387C	CAGCTGAGTGTTG	.	186	96	171	0	.	848	T	130884346	A	T	130884346	3	4	116	1	0	0	0	0	1	0	0	0	10323	304	11	4	1197	4	NEK11	3	130884346	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	5975026	130884346	67138084	71	13999											
PLSCR4	57088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	145924525	145924525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PLSCR4	NM_020353	exon4	c.C142T	p.P48S	TAGGTGGAGGGAC	.	124	17	108	0	.	90	A	145924525	G	A	145924525	3	1	116	1	0	0	0	0	1	0	0	0	12112	1174	41	3	871	3	PLSCR4	3	145924525	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	15040179	145924525	52097905	72	14000											
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180322340	180322340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTC14	NM_001042601	exon5	c.C646A	p.L216I	CCACACCTATCTG	.	167	41	153	0	.	91	A	180322340	C	A	180322340	3	1	116	1	0	0	0	0	1	0	0	0	16678	680	24	3	664	3	TTC14	3	180322340	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	34397815	180322340	17700090	73	14001											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195507956	195507956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC4	NM_018406	exon2	c.A10495T	p.T3499S	CACCTGTGGATGC	.	195	33	187	0	.	90	A	195507956	T	A	195507956	3	1	116	1	0	0	0	0	1	0	0	0	9978	1696	59	4		4	MUC4	3	195507956	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	15185616	195507956	2514474	74	14002											
POLN	353497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2209958	2209958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	POLN	NM_181808	exon3	c.A470C	p.K157T	ATATGTTTTCTTT	.	143	21	82	0	.	539	G	2209958	T	G	2209958	3	3	116	1	0	0	0	0	1	0	0	0	12207	1841	64	5	2320	5	POLN	4	2209958	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		2209958	188944318	75	14003											
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3427240	3427240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGS12	NM_002926	exon14	c.A3284G	p.D1095G	GTCTGGACGGACA	.	148	35	131	0	.	226	G	3427240	A	G	3427240	3	3	116	1	0	0	0	0	1	0	0	0	13295	275	10	2	3392	2	RGS12	4	3427240	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1217282	3427240	187727036	76	14004											
UCHL1	7345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	41266155	41266155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	UCHL1	NM_004181	exon8	c.A562T	p.S188C	GGCGCCAGTTCAG	.	97	53	69	0	.	523	T	41266155	A	T	41266155	3	4	116	1	0	0	0	0	1	0	0	0	16917	188	7	4	592	4	UCHL1	4	41266155	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	37838915	41266155	149888121	77	14005											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57873096	57873096	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	POLR2B	NM_000938	exon10	c.A1332T	p.L444L	TGGCCTAAAATAC	.	461	111	263	0	.	92	T	57873096	A	T	57873096	2	4	116	1	0	0	0	0	0	0	0	1	12215	349	13	4		4	POLR2B	4	57873096	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	16606941	57873096	133281180	78	14006											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62862048	62862048	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LPHN3	NM_015236	exon17	c.T3072C	p.F1024F	GAGTTTTATAGGA	.	65	50	132	0	.	508	C	62862048	T	C	62862048	2	2	116	1	0	0	0	0	0	0	0	1	8917	1751	61	2		2	LPHN3	4	62862048	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4988952	62862048	128292228	79	14007											
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87692580	87692580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PTPN13	NM_080685	exon31	c.T5075A	p.V1692E	ACATGGTATCACA	.	100	82	223	0	.	230	A	87692580	T	A	87692580	3	1	116	1	0	0	0	0	1	0	0	0	12782	1638	57	4	5193	4	PTPN13	4	87692580	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	24830532	87692580	103461696	80	14008											
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128628111	128628111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	INTU	NM_015693	exon12	c.G2258A	p.G753E	AAAGTGGGACCTT	.	39	31	77	0	.	91	A	128628111	G	A	128628111	3	1	116	1	0	0	0	0	1	0	0	0	7786	1232	43	3	2304	3	INTU	4	128628111	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	40935531	128628111	62526165	81	14009											
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152080413	152080413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SH3D19	NM_001128923	exon9	c.T894A	p.N298K	CTCAACATTACTG	.	68	21	96	0	.	92	T	152080413	A	T	152080413	3	4	116	1	0	0	0	0	1	0	0	0	14249	214	8	4	1530	4	SH3D19	4	152080413	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	23452302	152080413	39073863	82	14010											
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1882077	1882077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IRX4	NM_016358	exon2	c.T142A	p.Y48N	GGCAGTAGACCGG	.	87	59	76	0	.	226	T	1882077	A	T	1882077	3	4	116	1	0	0	0	0	1	0	0	0	7846	420	15	4	1433	4	IRX4	5	1882077	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		1882077	179033183	83	14011											
ERBB2IP	55914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65322213	65322213	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ERBB2IP	NM_001253701	exon13	c.A1104C	p.Q368H	TATGCAAAAATTA	.	88	18	82	0	.	653	C	65322213	A	C	65322213	3	2	116	1	0	0	0	0	1	0	0	0	5207	11	1	5	1146	5	ERBB2IP	5	65322213	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	63440136	65322213	115593047	84	14012											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90070014	90070014	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GPR98	NM_032119	exon60	c.G12297A	p.Q4099Q	GTCCCAGAAGACC	.	51	11	65	0	.	103	A	90070014	G	A	90070014	2	1	116	1	0	0	0	0	0	0	0	1	6721	933	33	3		3	GPR98	5	90070014	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	24747801	90070014	90845246	85	14013											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128977564	128977564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ADAMTS19	NM_133638	exon11	c.A1765T	p.T589S	ATTTGCACAGGAT	.	79	20	86	0	.	295	T	128977564	A	T	128977564	3	4	116	1	0	0	0	0	1	0	0	0	264	159	6	4	1807	4	ADAMTS19	5	128977564	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	38907550	128977564	51937696	86	14014											
CXXC5	51523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139060694	139060694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CXXC5	NM_016463	exon2	c.G586A	p.V196M	GAGGCTGTGGCAG	.	55	13	72	0	.	90	A	139060694	G	A	139060694	3	1	116	1	0	0	0	0	1	0	0	0	4099	1377	48	3	588	3	CXXC5	5	139060694	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	10083130	139060694	41854566	87	14015											
PCDHB13	56123	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140595369	140595369	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PCDHB13	NM_018933	exon1	c.G1674A	p.S558S	CAACTCGCCCTTC	.	30	17	25	0	.	93	A	140595369	G	A	140595369	2	1	116	1	0	0	0	0	0	0	0	1	11538	1074	38	1		1	PCDHB13	5	140595369	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	1534675	140595369	40319891	88	14016											
PCDHGB4	8641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140769755	140769755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_032098	exon1	c.T2304A	p.S768R	ATGTAGTGAGCAG	.	108	20	114	1	.	.	A	140769755	T	A	140769755	3	1	116	1	0	0	0	0	1	0	0	0	11565	1693	59	4	2306	4	PCDHGB4	5	140769755	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	174386	140769755	40145505	89	14017											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153035418	153035418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GRIA1	NM_001258021	exon5	c.A715T	p.I239F	CACTACATTCTTG	.	75	22	66	0	.	96	T	153035418	A	T	153035418	3	4	116	1	0	0	0	0	1	0	0	0	6767	217	8	4	703	4	GRIA1	5	153035418	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	12265663	153035418	27879842	90	14018											
TIMD4	91937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156381475	156381475	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TIMD4	NM_138379	exon2	c.T351A	p.P117P	CCAGCCAGGCACT	.	68	45	72	0	.	92	T	156381475	A	T	156381475	2	4	116	1	0	0	0	0	0	0	0	1	15900	175	7	4		4	TIMD4	5	156381475	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	3346057	156381475	24533785	91	14019											
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156899882	156899882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NIPAL4	NM_001099287	exon6	c.G1315A	p.D439N	CTGGAAGACAAGA	.	64	43	74	0	.	68	A	156899882	G	A	156899882	3	1	116	1	0	0	0	0	1	0	0	0	10427	942	33	3	1337	3	NIPAL4	5	156899882	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	518407	156899882	24015378	92	14020											
C5orf54	63920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159821530	159821530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C5orf54	NM_022090	exon2	c.G968C	p.S323T	AGGACACTATATT	.	81	18	88	0	.	91	G	159821530	C	G	159821530	3	3	116	1	0	0	0	0	1	0	0	0	2310	565	20	4	820	4	C5orf54	5	159821530	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	2921648	159821530	21093730	93	14021											
FGFR4	2264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176520211	176520211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FGFR4	NM_002011	exon9	c.C1130T	p.S377F	CGGGCTCCCTGGC	.	85	25	109	0	.	1460	T	176520211	C	T	176520211	3	4	116	1	0	0	0	0	1	0	0	0	5868	855	30	3	1160	3	FGFR4	5	176520211	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	16698681	176520211	4395049	94	14022											
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178392529	178392529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF454	NM_001178089	exon5	c.A1124T	p.Q375L	AACATCAGAGAAT	.	98	34	101	0	.	93	T	178392529	A	T	178392529	3	4	116	1	0	0	0	0	1	0	0	0	17920	188	7	4	1138	4	ZNF454	5	178392529	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1872318	178392529	2522731	95	14023											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12124094	12124094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HIVEP1	NM_002114	exon4	c.G4066T	p.V1356F	CTGAATGTTCCTG	.	158	24	86	0	.	139	T	12124094	G	T	12124094	3	4	116	1	0	0	0	0	1	0	0	0	7186	1377	48	3	4076	3	HIVEP1	6	12124094	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10		12124094	158990973	96	14024											
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29342331	29342331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR12D3	NM_030959	exon1	c.T734C	p.M245T	ACCACCATAAAAT	.	173	16	137	0	.	133	G	29342331	A	G	29342331	3	3	116	1	0	0	0	0	1	0	0	0	10932	217	8	2	220	2	OR12D3	6	29342331	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	17218237	29342331	141772736	97	14025											
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30621047	30621048	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DHX16	NM_003587	exon20	c.3098_3099insA	p.I1033fs	TTGCCTATTTTTT	.	163	80	100	0	.	228	T	30621048	-	T	30621047	7	5	116	1	0	1	1	0	0	0	0	0	4502	449	16	0	31	0	DHX16	6	30621047	Frame_Shift_Ins	INS	-	TCGA-ED-A7PZ-01A-11D-A33Q-10	1278716	30621047	140494020	98	14026											
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30918786	30918786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DPCR1	NM_080870	exon2	c.G2545T	p.A849S	AGCACAGCCAATG	.	94	45	45	0	.	90	T	30918786	G	T	30918786	3	4	116	1	0	0	0	0	1	0	0	0	4712	971	34	3	2551	3	DPCR1	6	30918786	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	297739	30918786	140196281	99	14027											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32015532	32015532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TNXB	NM_019105	exon30	c.A10297T	p.I3433F	CAGAGATGGGGCC	.	76	22	45	0	.	90	A	32015532	T	A	32015532	3	1	116	1	0	0	0	0	1	0	0	0	16343	1464	51	4	4476	4	TNXB	6	32015532	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1096746	32015532	139099535	100	14028											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40400714	40400714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LRFN2	NM_020737	exon2	c.C139A	p.P47T	CAGGGGGTACAAA	.	146	63	91	0	.	93	T	40400714	G	T	40400714	3	4	116	1	0	0	0	0	1	0	0	0	8938	1261	44	3	2238	3	LRFN2	6	40400714	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	8385182	40400714	130714353	101	14029											
TREML1	340205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41121500	41121500	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TREML1	NM_178174	exon2	c.C372T	p.P124P	ACCTGGGGGCAGT	.	150	20	85	0	.	153	A	41121500	G	A	41121500	2	1	116	1	0	0	0	0	0	0	0	1	16469	1219	43	3		3	TREML1	6	41121500	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	720786	41121500	129993567	102	14030											
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44149032	44149032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CAPN11	NM_007058	exon19	c.T1913A	p.L638Q	AGATCCTGTGGAA	.	95	52	63	0	.	136	A	44149032	T	A	44149032	3	1	116	1	0	0	0	0	1	0	0	0	2624	1580	55	4	1987	4	CAPN11	6	44149032	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	3027532	44149032	126966035	103	14031											
GSTA4	2941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52849299	52849299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GSTA4	NM_001512	exon5	c.A377T	p.Q126L	GCCTTCTGGGCCA	.	156	65	70	0	.	90	A	52849299	T	A	52849299	3	1	116	1	0	0	0	0	1	0	0	0	6833	1580	55	4	303	4	GSTA4	6	52849299	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	8700267	52849299	118265768	104	14032											
KHDRBS2	202559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	62407112	62407112	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KHDRBS2	NM_152688	exon8	c.T940A	p.Y314N	TGTCATAGGCATC	.	94	43	53	0	.	272	T	62407112	A	T	62407112	3	4	116	1	0	0	0	0	1	0	0	0	8147	420	15	4	117	4	KHDRBS2	6	62407112	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	9557813	62407112	108707955	105	14033											
DDX43	55510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74118988	74118988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DDX43	NM_018665	exon10	c.C1197A	p.D399E	AGCAGACAAGATG	.	77	17	90	0	.	229	A	74118988	C	A	74118988	3	1	116	1	0	0	0	0	1	0	0	0	4363	477	17	3	1235	3	DDX43	6	74118988	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	11711876	74118988	96996079	106	14034											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	75887629	75887629	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	COL12A1	NM_004370	exon12	c.A2187T	p.L729L	CACCTTTAGGTTT	.	36	33	38	0	.	142	A	75887629	T	A	75887629	2	1	116	1	0	0	0	0	0	0	0	1	3669	1741	61	4		4	COL12A1	6	75887629	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1768641	75887629	95227438	107	14035											
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84417640	84417640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SNAP91	NM_001242794	exon2	c.G7T	p.G3C	TTTGGCCCGACAT	.	42	41	25	0	.	23	A	84417640	C	A	84417640	3	1	116	1	0	0	0	0	1	0	0	0	14833	623	22	3	2824	3	SNAP91	6	84417640	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	8530011	84417640	86697427	108	14036											
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88854869	88854869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CNR1	NM_001160258	exon4	c.G125A	p.G42E	AAGTACCCTAATT	.	102	90	87	0	.	92	T	88854869	C	T	88854869	3	4	116	1	0	0	0	0	1	0	0	0	3631	623	22	3	1297	3	CNR1	6	88854869	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	4437229	88854869	82260198	109	14037											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129591828	129591828	+	Silent	SNP	C	C	T	rs147744763	byfrequency	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LAMA2	NM_000426	exon17	c.C2382T	p.G794G	CTATGGCGAGCCT	.	151	124	201	0	C|1.000;T|0.000	162	T	129591828	C	T	129591828	2	4	116	1	0	0	0	0	0	0	0	1	8606	755	27	1		1	LAMA2	6	129591828	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	40736959	129591828	41523239	110	14038											
TCF21	6943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134210900	134210900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TCF21	NM_003206	exon1	c.G365A	p.R122K	CGCTCAGGCTGGC	.	155	36	221	0	.	90	A	134210900	G	A	134210900	3	1	116	1	0	0	0	0	1	0	0	0	15688	1000	35	3	367	3	TCF21	6	134210900	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	4619072	134210900	36904167	111	14039											
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	136597179	136597179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BCLAF1	NM_014739	exon5	c.A1484T	p.Q495L	GGTGACTGAGTTT	.	132	42	113	0	.	228	A	136597179	T	A	136597179	3	1	116	1	0	0	0	0	1	0	0	0	1383	1580	55	4	1314	4	BCLAF1	6	136597179	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2386279	136597179	34517888	112	14040											
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151151983	151151983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PLEKHG1	NM_001029884	exon16	c.A1736G	p.D579G	GTGAAGATAGCAC	.	60	50	101	0	.	92	G	151151983	A	G	151151983	3	3	116	1	0	0	0	0	1	0	0	0	12068	333	12	2	1790	2	PLEKHG1	6	151151983	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	14554804	151151983	19963084	113	14041											
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167754699	167754699	+	Silent	SNP	C	C	A	rs201555411	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTLL2	NM_031949	exon3	c.C1311A	p.I437I	CAACATCGACGCT	.	56	54	66	0	C|0.999;T|0.000	92	A	167754699	C	A	167754699	2	1	116	1	0	0	0	0	0	0	0	1	16724	874	31	1		1	TTLL2	6	167754699	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	16602716	167754699	3360368	114	14042											
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170112536	170112536	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PHF10	NM_018288	exon8	c.A903T	p.S301S	ATCATCTGAATCA	.	171	147	258	0	.	226	A	170112536	T	A	170112536	2	1	116	1	0	0	0	0	0	0	0	1	11821	1567	55	4		4	PHF10	6	170112536	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2357837	170112536	1002531	115	14043											
FTSJ2	29960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2279075	2279075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FTSJ2	NM_013393	exon2	c.G276C	p.Q92H	GACCTTCTGCACC	.	38	20	38	0	.	91	G	2279075	C	G	2279075	3	3	116	1	0	0	0	0	1	0	0	0	6088	912	32	4	472	4	FTSJ2	7	2279075	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10		2279075	156859588	116	14044											
USP42	84132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6189834	6189834	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	USP42	NM_032172	exon13	c.G2007A	p.P669P	TGACCCGAAAGAA	.	50	31	48	0	.	659	A	6189834	G	A	6189834	2	1	116	1	0	0	0	0	0	0	0	1	17070	1045	37	1		1	USP42	7	6189834	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	3910759	6189834	152948829	117	14045											
PHF14	9678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11030469	11030469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PHF14	NM_014660	exon4	c.A1040G	p.H347R	CAGTCCATGAAGG	.	122	50	99	0	.	538	G	11030469	A	G	11030469	3	3	116	1	0	0	0	0	1	0	0	0	11825	217	8	2	1054	2	PHF14	7	11030469	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4840635	11030469	148108194	118	14046											
IGF2BP3	10643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23391021	23391021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IGF2BP3	NM_006547	exon6	c.T586A	p.L196M	GAGGCAAATCACA	.	69	35	67	0	.	92	T	23391021	A	T	23391021	3	4	116	1	0	0	0	0	1	0	0	0	7575	11	1	4	1193	4	IGF2BP3	7	23391021	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	12360552	23391021	135747642	119	14047											
AVL9	23080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	32599056	32599056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AVL9	NM_015060	exon10	c.C1195A	p.P399T	GGCATGCCCCTGG	.	128	32	126	0	.	90	A	32599056	C	A	32599056	3	1	116	1	0	0	0	0	1	0	0	0	1228	739	26	3	1233	3	AVL9	7	32599056	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	9208035	32599056	126539607	120	14048											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42007259	42007259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GLI3	NM_000168	exon14	c.T2366A	p.M789K	GGAAACATTCCAT	.	144	65	139	0	.	1149	T	42007259	A	T	42007259	3	4	116	1	0	0	0	0	1	0	0	0	6439	217	8	4	2384	4	GLI3	7	42007259	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	9408203	42007259	117131404	121	14049											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484963	43484963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HECW1	NM_015052	exon11	c.C2192A	p.T731K	AGAGCACGGTCTT	.	65	29	93	0	.	669	A	43484963	C	A	43484963	3	1	116	1	0	0	0	0	1	0	0	0	7042	536	19	1	2226	1	HECW1	7	43484963	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	1477704	43484963	115653700	122	14050											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48278844	48278844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCA13	NM_152701	exon9	c.A904T	p.T302S	ATTCCCACAGACA	.	50	21	53	0	.	521	T	48278844	A	T	48278844	3	4	116	1	0	0	0	0	1	0	0	0	31	159	6	4	767	4	ABCA13	7	48278844	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4793881	48278844	110859819	123	14051											
SRRM3	222183	broad.mit.edu;mdanderson.org	37	7	75896669	75896669	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	.	.	.	.	CGGATGGGGGTCG	.	65	27	53	0	.	.	A	75896669	G	A	75896669	4	1	116	1	0	0	0	0	0	1	0	0	15169	1241	43	3	962	3	SRRM3	7	75896669	Nonsense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	27617825	75896669	83241994	124	14052											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100676441	100676441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC17	NM_001040105	exon3	c.G1744A	p.V582M	AGGCTGGTGGTCA	.	69	38	77	0	.	95	A	100676441	G	A	100676441	3	1	116	1	0	0	0	0	1	0	0	0	9974	1261	44	3	1754	3	MUC17	7	100676441	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	24779772	100676441	58462222	125	14053											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100684989	100684989	+	Missense_Mutation	SNP	C	C	T	rs190089107	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC17	NM_001040105	exon3	c.C10292T	p.T3431I	TGGTGACCACTTC	.	99	47	97	0	C|0.999;G|0.000	95	T	100684989	C	T	100684989	3	4	116	1	0	0	0	0	1	0	0	0	9974	507	18	3	10302	3	MUC17	7	100684989	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	8548	100684989	58453674	126	14054											
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127978350	127978350	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RBM28	NM_018077	exon5	c.A495C	p.L165L	TGCTTCTAGGAGG	.	103	43	106	0	.	92	G	127978350	T	G	127978350	2	3	116	1	0	0	0	0	0	0	0	1	13128	1509	53	5		5	RBM28	7	127978350	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	27293361	127978350	31160313	127	14055											
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129951962	129951962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CPA4	NM_016352	exon10	c.T1078A	p.Y360N	ACTGTCTGTAAGT	.	51	25	57	0	.	515	A	129951962	T	A	129951962	3	1	116	1	0	0	0	0	1	0	0	0	3792	1594	55	4	1116	4	CPA4	7	129951962	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1973612	129951962	29186701	128	14056											
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139416674	139416675	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	.	.	.	p.QS53HC	TCTTGCTCTGGCT	.	122	66	135	0	.	.	AA	139416675	TC	AA	139416674	3	1	116	1	0	0	0	0	1	0	0	0	7117	1551	54	4	3492	4	HIPK2	7	139416674	Missense_Mutation	DNP	TC	TCGA-ED-A7PZ-01A-11D-A33Q-10	9464712	139416674	19721989	129	14057											
MRPS33	51650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140710338	140710338	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MRPS33	NM_016071	exon2	c.A96G	p.K32K	CACCACTTTCATA	.	156	57	161	0	.	90	C	140710338	T	C	140710338	2	2	116	1	0	0	0	0	0	0	0	1	9842	1606	56	2		2	MRPS33	7	140710338	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1293664	140710338	18428325	130	14058											
CNPY1	285888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155301641	155301641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CNPY1	NM_001103176	exon2	c.A92T	p.E31V	TTAAATTCTTGGT	.	107	42	124	0	.	68	A	155301641	T	A	155301641	3	1	116	1	0	0	0	0	1	0	0	0	3627	1783	62	4	198	4	CNPY1	7	155301641	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	14591303	155301641	3837022	131	14059											
MNX1	3110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156802352	156802352	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MNX1	NM_005515	exon2	c.691+2T>A	.	GTACTCACAGTTG	.	55	24	69	0	.	658	T	156802352	A	T	156802352	5	4	116	1	0	0	0	0	0	0	1	0	9679	173	6	4	583	4	MNX1	7	156802352	Splice_Site	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1500711	156802352	2336311	132	14060											
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16035438	16035438	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MSR1	NM_138715	exon2	c.T60A	p.S20S	TTTCACAGATTCG	.	41	36	77	0	.	91	T	16035438	A	T	16035438	2	4	116	1	0	0	0	0	0	0	0	1	9886	175	7	4		4	MSR1	8	16035438	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		16035438	130328584	133	14061											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30705371	30705371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TEX15	NM_031271	exon1	c.T1163C	p.I388T	TGGGGTATGTCTT	.	60	51	124	0	.	97	G	30705371	A	G	30705371	3	3	116	1	0	0	0	0	1	0	0	0	15776	449	16	2	7222	2	TEX15	8	30705371	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	14669933	30705371	115658651	134	14062											
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	54792132	54792132	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGS20	NM_170587	exon2	c.C480T	p.D160D	AGAAGACGCCACC	.	95	20	90	0	.	227	T	54792132	C	T	54792132	2	4	116	1	0	0	0	0	0	0	0	1	13303	535	19	1		1	RGS20	8	54792132	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	24086761	54792132	91571890	135	14063											
LYN	4067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	56879395	56879395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LYN	NM_002350	exon9	c.G912T	p.R304S	CGTGAGGCTCTAC	.	172	63	163	1	.	1002	T	56879395	G	T	56879395	3	4	116	1	0	0	0	0	1	0	0	0	9107	1194	42	3	942	3	LYN	8	56879395	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	2087263	56879395	89484627	136	14064											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69143582	69143582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PREX2	NM_024870	exon40	c.G4790T	p.C1597F	AGCTGTGCGAGCC	.	92	34	70	0	.	390	T	69143582	G	T	69143582	3	4	116	1	0	0	0	0	1	0	0	0	12477	1319	46	3	5177	3	PREX2	8	69143582	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	12264187	69143582	77220440	137	14065											
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73932979	73932979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TERF1	NM_017489	exon3	c.G476C	p.G159A	TTTGGGGTTCAAT	.	356	135	266	0	.	228	C	73932979	G	C	73932979	3	2	116	1	0	0	0	0	1	0	0	0	15758	1261	44	4	486	4	TERF1	8	73932979	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	4789397	73932979	72431043	138	14066											
ZFAND1	79752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82615054	82615054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZFAND1	NM_024699	exon8	c.A683G	p.D228G	GTATGATCCAAGG	.	202	25	182	0	.	91	C	82615054	T	C	82615054	3	2	116	1	0	0	0	0	1	0	0	0	17623	1435	50	2	127	2	ZFAND1	8	82615054	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	8682075	82615054	63748968	139	14067											
TP53INP1	94241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95952315	95952315	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TP53INP1	NM_001135733	exon3	c.C246A	p.S82S	AAAGCAGGAATCA	.	165	23	161	0	.	226	T	95952315	G	T	95952315	2	4	116	1	0	0	0	0	0	0	0	1	16385	987	35	3		3	TP53INP1	8	95952315	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	13337261	95952315	50411707	140	14068											
OSR2	116039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99963924	99963924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OSR2	NM_001142462	exon4	c.T934G	p.F312V	CAGGACTTCTAGA	.	69	29	49	0	.	1	G	99963924	T	G	99963924	3	3	116	1	0	0	0	0	1	0	0	0	11294	1609	56	5	944	5	OSR2	8	99963924	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4011609	99963924	46400098	141	14069											
CSMD3	114788	broad.mit.edu;bcgsc.ca	37	8	113293463	113293463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CSMD3	NM_198123	exon59	c.C9448A	p.P3150T	CTGAAGGTCCAGA	.	110	22	93	1	.	1132	T	113293463	G	T	113293463	3	4	116	1	0	0	0	0	1	0	0	0	3946	1261	44	3	1727	3	CSMD3	8	113293463	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	13329539	113293463	33070559	142	14070											
FER1L6	654463	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125131937	125131937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FER1L6	NM_001039112	exon41	c.T5480A	p.I1827N	TCATCATTGCTTT	.	122	65	114	1	.	100	A	125131937	T	A	125131937	3	1	116	1	0	0	0	0	1	0	0	0	5815	1493	52	4	5638	4	FER1L6	8	125131937	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	11838474	125131937	21232085	143	14071											
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142151309	142151309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DENND3	NM_014957	exon4	c.A269G	p.Y90C	ATGAGTACTGTTT	.	78	23	61	0	.	91	G	142151309	A	G	142151309	3	3	116	1	0	0	0	0	1	0	0	0	4432	391	14	2	279	2	DENND3	8	142151309	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	17019372	142151309	4212713	144	14072											
ZNF16	7564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	146157778	146157778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF16	NM_006958	exon3	c.A395T	p.Q132L	CCCTCCTGGGAGA	.	91	46	68	0	.	95	A	146157778	T	A	146157778	3	1	116	1	0	0	0	0	1	0	0	0	17735	1580	55	4	1657	4	ZNF16	8	146157778	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4006469	146157778	206244	145	14073											
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2641451	2641451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	VLDLR	NM_003383	exon4	c.T400A	p.C134S	TGGAGATGTGATG	.	60	50	127	0	.	516	A	2641451	T	A	2641451	3	1	116	1	0	0	0	0	1	0	0	0	17171	1464	51	4	414	4	VLDLR	9	2641451	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		2641451	138571980	146	14074											
GABBR2	9568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101068512	101068512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GABBR2	NM_005458	exon15	c.C2120T	p.A707V	ACAGCGGCCCCGA	.	77	69	186	0	.	518	A	101068512	G	A	101068512	3	1	116	1	0	0	0	0	1	0	0	0	6156	1203	42	3	725	3	GABBR2	9	101068512	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	98427061	101068512	40144919	147	14075											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117139221	117139221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AKNA	NM_030767	exon3	c.G866A	p.C289Y	TGAGGGCAGAAGA	.	30	26	91	0	.	94	T	117139221	C	T	117139221	3	4	116	1	0	0	0	0	1	0	0	0	463	710	25	3	3533	3	AKNA	9	117139221	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	16070709	117139221	24074210	148	14076											
URM1	81605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131133678	131133678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	URM1	NM_001265582	exon1	c.G19C	p.V7L	TTGTCAGTGGAGG	.	40	33	90	0	.	90	C	131133678	G	C	131133678	3	2	116	1	0	0	0	0	1	0	0	0	17024	1029	36	4	21	4	URM1	9	131133678	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	13994457	131133678	10079753	149	14077											
NTNG2	84628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135116364	135116364	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NTNG2	NM_032536	exon7	c.C1290A	p.R430R	GTGCCGCGAGGGC	.	23	22	47	0	.	90	A	135116364	C	A	135116364	2	1	116	1	0	0	0	0	0	0	0	1	10705	755	27	1		1	NTNG2	9	135116364	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	3982686	135116364	6097067	150	14078											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12126675	12126675	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DHTKD1	NM_018706	exon3	c.G447T	p.R149R	CAAGCGGTTTGAG	.	132	63	139	0	.	515	T	12126675	G	T	12126675	2	4	116	1	0	0	0	0	0	0	0	1	4500	1248	44	3		3	DHTKD1	10	12126675	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10		12126675	123408072	151	14079											
MKX	283078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	28023482	28023482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MKX	NM_001242702	exon5	c.A741T	p.Q247H	GTTTCTTTGCCTT	.	119	63	142	0	.	91	A	28023482	T	A	28023482	3	1	116	1	0	0	0	0	1	0	0	0	9610	1838	64	4	329	4	MKX	10	28023482	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	15896807	28023482	107511265	152	14080											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32560684	32560684	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EPC1	NM_025209	exon14	c.A2236T	p.T746S	GAGTTGTTGCAGA	.	139	71	147	0	.	93	A	32560684	T	A	32560684	3	1	116	1	0	0	0	0	1	0	0	0	5160	1725	60	4	282	4	EPC1	10	32560684	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4537202	32560684	102974063	153	14081											
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49392912	49392912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FRMPD2	NM_001018071	exon19	c.A2372T	p.N791I	CCCTCATTAATGA	.	78	28	86	0	.	153	A	49392912	T	A	49392912	3	1	116	1	0	0	0	0	1	0	0	0	6058	1493	52	4	1601	4	FRMPD2	10	49392912	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	16832228	49392912	86141835	154	14082											
CLRN3	119467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129681969	129681969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CLRN3	NM_152311	exon2	c.G400T	p.G134W	CGAGCCCGTTCCA	.	89	43	120	0	.	91	A	129681969	C	A	129681969	3	1	116	1	0	0	0	0	1	0	0	0	3559	652	23	1	288	1	CLRN3	10	129681969	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	80289057	129681969	5852778	155	14083											
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134942775	134942775	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GPR123	NM_001083909	exon7	c.C1443T	p.V481V	CATGGTCACCCAG	.	49	22	58	0	.	90	T	134942775	C	T	134942775	2	4	116	1	0	0	0	0	0	0	0	1	6637	813	29	3		3	GPR123	10	134942775	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	5260806	134942775	591972	156	14084											
HBE1	3046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5291051	5291051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HBE1	NM_005330	exon1	c.G70T	p.A24S	CTCCAGCCTCTTC	.	61	11	91	0	.	90	A	5291051	C	A	5291051	3	1	116	1	0	0	0	0	1	0	0	0	6980	739	26	3	385	3	HBE1	11	5291051	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10		5291051	129715465	157	14085											
SWAP70	23075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9750888	9750888	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SWAP70	NM_015055	exon6	c.790-2A>T	.	TGTTTTAGTCCTT	.	115	36	145	0	.	228	T	9750888	A	T	9750888	5	4	116	1	0	0	0	0	0	0	1	0	15422	434	15	4	810	4	SWAP70	11	9750888	Splice_Site	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4459837	9750888	125255628	158	14086											
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9853870	9853870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SBF2	NM_030962	exon27	c.T3553C	p.W1185R	TCTTCCAACATAC	.	98	24	120	0	.	93	G	9853870	A	G	9853870	3	3	116	1	0	0	0	0	1	0	0	0	13859	130	5	2	2052	2	SBF2	11	9853870	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	102982	9853870	125152646	159	14087											
RASSF10	644943	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	13031125	13031125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001080521	exon1	c.T2A	p.M1K	GCGCCATGGATCC	.	39	25	37	0	.	.	A	13031125	T	A	13031125	3	1	116	1	0	0	0	0	1	0	0	0	13085	1464	51	4	332	4	RASSF10	11	13031125	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	3177255	13031125	121975391	160	14088											
CD44	960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	35236397	35236397	+	Splice_Site	SNP	A	A	T	rs200427375	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CD44	NM_000610	exon15	c.1811-2A>T	.	CATTACAGGAGAC	.	57	36	92	0	.	227	T	35236397	A	T	35236397	5	4	116	1	0	0	0	0	0	0	1	0	3017	202	7	4	1867	4	CD44	11	35236397	Splice_Site	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	22205272	35236397	99770119	161	14089											
OR8H2	390151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55873254	55873254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR8H2	NM_001005200	exon1	c.T736G	p.L246V	CATCTCTTGGGAG	.	85	24	113	0	.	70	G	55873254	T	G	55873254	3	3	116	1	0	0	0	0	1	0	0	0	11238	1606	56	5	738	5	OR8H2	11	55873254	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	20636857	55873254	79133262	162	14090											
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56058142	56058142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR8H1	NM_001005199	exon1	c.G397A	p.V133I	TAATAACTGGGTA	.	86	21	124	0	.	71	T	56058142	C	T	56058142	3	4	116	1	0	0	0	0	1	0	0	0	11237	565	20	3	540	3	OR8H1	11	56058142	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	184888	56058142	78948374	163	14091											
CLP1	10978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57427466	57427466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CLP1	NM_006831	exon2	c.A518T	p.D173V	CTGCAGATGTCGA	.	56	30	87	0	.	91	T	57427466	A	T	57427466	3	4	116	1	0	0	0	0	1	0	0	0	3550	333	12	4	520	4	CLP1	11	57427466	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1369324	57427466	77579050	164	14092											
TMX2	51075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57505430	57505441	+	In_Frame_Del	DEL	TGGCCAACACAA	TGGCCAACACAA	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	TGGCCAACACAA	TGGCCAACACAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TMX2	NM_015959	exon3	c.296_307del	p.99_103del	GTAAAGTGGCCAA	.	84	22	162	0	.	90	-	57505441	TGGCCAACACAA	-	57505430	7	5	116	1	0	1	0	1	0	0	0	0	16264	1696	59	0	306	0	TMX2	11	57505430	In_Frame_Del	DEL	TGGCCAACACAA	TCGA-ED-A7PZ-01A-11D-A33Q-10	77964	57505430	77501086	165	14093											
SLC22A9	114571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63176219	63176219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC22A9	NM_080866	exon9	c.T1469C	p.L490P	TGATCCTAAGTGT	.	87	29	102	0	.	153	C	63176219	T	C	63176219	3	2	116	1	0	0	0	0	1	0	0	0	14461	1522	53	2	1503	2	SLC22A9	11	63176219	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	5670789	63176219	71830297	166	14094											
SLC22A9	114571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63177289	63177289	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC22A9	NM_080866	exon10	c.A1617T	p.R539S	CCCCAGAGAACCA	.	61	41	72	0	.	153	T	63177289	A	T	63177289	3	4	116	1	0	0	0	0	1	0	0	0	14461	301	11	4	1655	4	SLC22A9	11	63177289	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1070	63177289	71829227	167	14095											
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	63585819	63585819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C11orf84	NM_138471	exon3	c.C589T	p.R197C	GGACTCCGCCCCC	.	31	19	52	0	.	90	T	63585819	C	T	63585819	3	4	116	1	0	0	0	0	1	0	0	0	1667	652	23	1	599	1	C11orf84	11	63585819	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	408530	63585819	71420697	168	14096											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92534161	92534161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FAT3	NM_001008781	exon9	c.T7982C	p.V2661A	GGATGGTCACAAA	.	83	51	121	0	.	73	C	92534161	T	C	92534161	3	2	116	1	0	0	0	0	1	0	0	0	5691	1667	58	2	8016	2	FAT3	11	92534161	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	28948342	92534161	42472355	169	14097											
MMP7	4316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102398359	102398359	+	Missense_Mutation	SNP	C	C	A	rs138303399	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MMP7	NM_002423	exon3	c.G380T	p.R127L	ACTAATCGATCCA	.	68	20	93	0	C|1.000;T|0.000	651	A	102398359	C	A	102398359	3	1	116	1	0	0	0	0	1	0	0	0	9667	884	31	1	439	1	MMP7	11	102398359	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	9864198	102398359	32608157	170	14098											
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810255	106810255	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GUCY1A2	NM_000855	exon4	c.G1137A	p.L379L	TCGCAGCAGGACC	.	123	35	189	0	.	589	T	106810255	C	T	106810255	2	4	116	1	0	0	0	0	0	0	0	1	6893	697	25	3		3	GUCY1A2	11	106810255	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	4411896	106810255	28196261	171	14099											
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113281601	113281601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DRD2	NM_000795	exon8	c.A1180G	p.I394V	TCAGGATGTGTGT	.	104	65	149	0	.	92	C	113281601	T	C	113281601	3	2	116	1	0	0	0	0	1	0	0	0	4757	1464	51	2	155	2	DRD2	11	113281601	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	6471346	113281601	21724915	172	14100											
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124180322	124180322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR8D1	NM_001002917	exon1	c.T341A	p.L114H	GTCAGGAGGTAAC	.	118	83	117	0	.	71	T	124180322	A	T	124180322	3	4	116	1	0	0	0	0	1	0	0	0	11231	304	11	4	588	4	OR8D1	11	124180322	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	10898721	124180322	10826194	173	14101											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2717739	2717739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CACNA1C	NM_199460	exon28	c.T3479A	p.V1160E	ACCGTGTGGAGAT	.	115	18	92	0	.	34	A	2717739	T	A	2717739	3	1	116	1	0	0	0	0	1	0	0	0	2540	1696	59	4	3697	4	CACNA1C	12	2717739	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		2717739	131134156	174	14102											
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3047308	3047308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TULP3	NM_003324	exon10	c.A1052T	p.Q351L	GGTGGCAGAACAG	.	124	93	104	0	.	226	T	3047308	A	T	3047308	3	4	116	1	0	0	0	0	1	0	0	0	16772	188	7	4	1090	4	TULP3	12	3047308	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	329569	3047308	130804587	175	14103											
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	5153590	5153590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNA5	NM_002234	exon1	c.C277T	p.P93S	CCGCCTCCCGAGG	.	30	22	31	0	.	715	T	5153590	C	T	5153590	3	4	116	1	0	0	0	0	1	0	0	0	8006	855	30	3	279	3	KCNA5	12	5153590	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	2106282	5153590	128698305	176	14104											
LEPREL2	10536	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6939521	6939521	+	RNA	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LEPREL2	.	.	.	.	AGGCAGCCTATGA	.	187	35	135	0	.	22	T	6939521	C	T	6939521	1	4	116	0	1	0	0	0	0	0	0	0	8731	739	26	3		3	LEPREL2	12	6939521	RNA	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	1785931	6939521	126912374	177	14105											
CLEC2B	9976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10005943	10005943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CLEC2B	NM_005127	exon5	c.T406C	p.C136R	TGTAACATCTAGC	.	79	60	77	0	.	90	G	10005943	A	G	10005943	3	3	116	1	0	0	0	0	1	0	0	0	3507	217	8	2	47	2	CLEC2B	12	10005943	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	3066422	10005943	123845952	178	14106											
TAS2R9	50835	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10962090	10962091	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TAS2R9	NM_023917	exon1	c.585_586insT	p.L195fs	TGAGATCAGGCAA	.	167	26	132	0	.	91	A	10962091	-	A	10962090	7	5	116	1	0	1	1	0	0	0	0	0	15585	813	29	0	357	0	TAS2R9	12	10962090	Frame_Shift_Ins	INS	-	TCGA-ED-A7PZ-01A-11D-A33Q-10	956147	10962090	122889805	179	14107											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43826449	43826449	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ADAMTS20	NM_025003	exon20	c.T2886C	p.H962H	GTTACCATGGCAT	.	141	94	120	0	.	795	G	43826449	A	G	43826449	2	3	116	1	0	0	0	0	0	0	0	1	266	214	8	2		2	ADAMTS20	12	43826449	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	32864359	43826449	90025446	180	14108											
HDAC7	51564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48191236	48191236	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HDAC7	NM_001098416	exon6	c.A508C	p.S170R	AGCTGCTGAGCAT	.	72	54	68	0	.	289	G	48191236	T	G	48191236	3	3	116	1	0	0	0	0	1	0	0	0	7012	1580	55	5	2551	5	HDAC7	12	48191236	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	4364787	48191236	85660659	181	14109											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50869368	50869368	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LARP4	NM_052879	exon16	c.A1896T	p.S632S	ATCTTCAGTTCTT	.	175	45	152	0	.	91	T	50869368	A	T	50869368	2	4	116	1	0	0	0	0	0	0	0	1	8630	175	7	4		4	LARP4	12	50869368	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	2678132	50869368	82982527	182	14110											
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57498539	57498539	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	STAT6	NM_001178079	exon10	c.G1059C	p.G353G	GCAGTTCCCAGGA	.	71	19	69	0	.	849	G	57498539	C	G	57498539	2	3	116	1	0	0	0	0	0	0	0	1	15269	842	30	4		4	STAT6	12	57498539	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	6629171	57498539	76353356	183	14111											
C12orf56	115749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64724758	64724758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C12orf56	NM_001170633	exon3	c.T470A	p.L157Q	TCTTTCAGACTTC	.	70	57	65	0	.	68	T	64724758	A	T	64724758	3	4	116	1	0	0	0	0	1	0	0	0	1700	188	7	4	1442	4	C12orf56	12	64724758	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	7226219	64724758	69127137	184	14112											
SLC6A15	55117	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85266977	85266977	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC6A15	NM_182767	exon7	c.A998T	p.D333V	ACAGCATCAAAGT	.	341	252	253	1	.	93	A	85266977	T	A	85266977	3	1	116	1	0	0	0	0	1	0	0	0	14678	1435	50	4	1218	4	SLC6A15	12	85266977	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	20542219	85266977	48584918	185	14113											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101693811	101693811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	UTP20	NM_014503	exon14	c.G1647T	p.M549I	CTTCATGACTGTT	.	198	180	286	1	.	155	T	101693811	G	T	101693811	3	4	116	1	0	0	0	0	1	0	0	0	17096	1290	45	3	1701	3	UTP20	12	101693811	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	16426834	101693811	32158084	186	14114											
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102419817	102419817	+	Splice_Site	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_016053	exon7	c.436-1G>C	.	TACACCCTAAGCA	.	64	15	63	0	.	.	G	102419817	C	G	102419817	5	3	116	1	0	0	0	0	0	0	1	0	2823	695	24	4		4	CCDC53	12	102419817	Splice_Site	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	726006	102419817	31432078	187	14115											
VSIG10	54621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118533474	118533474	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_019086	exon2	c.A225T	p.P75P	CTCAGCTGGCCGG	.	139	132	137	0	.	.	A	118533474	T	A	118533474	2	1	116	1	0	0	0	0	0	0	0	1	17220	1567	55	4		4	VSIG10	12	118533474	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	16113657	118533474	15318421	188	14116											
SACS	26278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23911609	23911609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SACS	NM_014363	exon10	c.A6406T	p.T2136S	CCTGAGTAGAACC	.	72	30	145	1	.	298	A	23911609	T	A	23911609	3	1	116	1	0	0	0	0	1	0	0	0	13804	1638	57	4	7337	4	SACS	13	23911609	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		23911609	91258269	189	14117											
WASF3	10810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	27239184	27239184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	WASF3	NM_006646	exon4	c.A153G	p.I51M	AGACATATTTGGT	.	41	15	71	0	.	91	G	27239184	A	G	27239184	3	3	116	1	0	0	0	0	1	0	0	0	17251	439	16	2	159	2	WASF3	13	27239184	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	3327575	27239184	87930694	190	14118											
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29001941	29001941	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FLT1	NM_002019	exon9	c.C1224T	p.S408S	TTTTATGCTCAGC	.	38	19	83	0	.	1406	A	29001941	G	A	29001941	2	1	116	1	0	0	0	0	0	0	0	1	5941	1310	46	3		3	FLT1	13	29001941	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	1762757	29001941	86167937	191	14119											
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43469145	43469146	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	.	.	.	p.W316F	ACTCACCCAGCTG	.	21	13	83	0	.	.	AA	43469146	CC	AA	43469145	3	1	116	1	0	0	0	0	1	0	0	0	5198	637	22	3	296	3	EPSTI1	13	43469145	Missense_Mutation	DNP	CC	TCGA-ED-A7PZ-01A-11D-A33Q-10	14467204	43469145	71700733	192	14120											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49027173	49027173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RB1	NM_000321	exon18	c.A1740C	p.E580D	CCGAGAAGGACCA	.	32	11	46	0	.	3784	C	49027173	A	C	49027173	3	2	116	1	0	0	0	0	1	0	0	0	13098	69	3	5	1810	5	RB1	13	49027173	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	5558028	49027173	66142705	193	14121											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95816633	95816633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCC4	NM_005845	exon16	c.A2174T	p.Q725L	TTTACCTGAGCTG	.	60	15	100	0	.	515	A	95816633	T	A	95816633	3	1	116	1	0	0	0	0	1	0	0	0	55	1594	55	4	1916	4	ABCC4	13	95816633	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	46789460	95816633	19353245	194	14122											
RNASE1	6035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21270099	21270099	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RNASE1	NM_198235	exon3	c.A129T	p.S43S	ACTGTCTGAGTCC	.	43	8	41	0	.	90	A	21270099	T	A	21270099	2	1	116	1	0	0	0	0	0	0	0	1	13399	1567	55	4		4	RNASE1	14	21270099	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		21270099	86079441	195	14123											
OR10G3	26533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	22038449	22038449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR10G3	NM_001005465	exon1	c.G427T	p.A143S	GCAAGGCGCTCAG	.	51	10	86	2	.	68	A	22038449	C	A	22038449	3	1	116	1	0	0	0	0	1	0	0	0	10900	768	27	1	517	1	OR10G3	14	22038449	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	768350	22038449	85311091	196	14124											
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59112597	59112597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DACT1	NM_016651	exon4	c.G1256T	p.W419L	AGCAGTGGTCGAA	.	38	18	59	0	.	291	T	59112597	G	T	59112597	3	4	116	1	0	0	0	0	1	0	0	0	4222	1357	47	3	1270	3	DACT1	14	59112597	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	37074148	59112597	48236943	197	14125											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64522760	64522760	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SYNE2	NM_182914	exon49	c.C9843G	p.P3281P	TATACCCTACAGA	.	176	58	227	0	.	164	G	64522760	C	G	64522760	2	3	116	1	0	0	0	0	0	0	0	1	15443	668	24	4		4	SYNE2	14	64522760	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	5410163	64522760	42826780	198	14126											
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69676318	69676318	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001193361	exon2	c.A131T	p.Q44L	AGCCACAGCAGAA	.	82	55	110	0	.	.	T	69676318	A	T	69676318	3	4	116	1	0	0	0	0	1	0	0	0	5298	203	7	4		4	EXD2	14	69676318	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	5153558	69676318	37673222	199	14127											
SLC10A1	6554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70263762	70263764	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC10A1	NM_003049	exon1	c.109_111del	p.37_37del	CATGATGAAGAAC	.	88	43	115	0	.	91	-	70263764	GAA	-	70263762	7	5	116	1	0	1	0	1	0	0	0	0	14373	1281	45	0	958	0	SLC10A1	14	70263762	In_Frame_Del	DEL	GAA	TCGA-ED-A7PZ-01A-11D-A33Q-10	587444	70263762	37085778	200	14128											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75505088	75505088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MLH3	NM_014381	exon6	c.A3598G	p.I1200V	AGGCAATAAACTT	.	57	21	77	0	.	228	C	75505088	T	C	75505088	3	2	116	1	0	0	0	0	1	0	0	0	9618	1406	49	2	795	2	MLH3	14	75505088	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	5241326	75505088	31844452	201	14129											
SERPINA3	12	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95088801	95088801	+	Silent	SNP	A	A	T	rs1802958	byfrequency;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SERPINA3	NM_001085	exon4	c.A1041T	p.T347T	GATCACAGGGGCC	.	76	21	124	0	A|0.990;G|0.010	653	T	95088801	A	T	95088801	2	4	116	1	0	0	0	0	0	0	0	1	14090	175	7	4		4	SERPINA3	14	95088801	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	19583713	95088801	12260739	202	14130											
BAG5	9529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104026798	104026798	+	Missense_Mutation	SNP	C	C	T	rs141215432	byfrequency	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BAG5	NM_001015049	exon2	c.G827A	p.R276Q	TCTGTCCGGCCGC	.	88	30	81	0	C|0.997;T|0.003	229	T	104026798	C	T	104026798	3	4	116	1	0	0	0	0	1	0	0	0	1290	652	23	1	643	1	BAG5	14	104026798	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	8937997	104026798	3322742	203	14131											
PPP1R13B	23368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104209017	104209017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PPP1R13B	NM_015316	exon10	c.T1294G	p.S432A	GTGCTGAGAAGGG	.	54	32	65	1	.	227	C	104209017	A	C	104209017	3	2	116	1	0	0	0	0	1	0	0	0	12357	304	11	5	2010	5	PPP1R13B	14	104209017	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	182219	104209017	3140523	204	14132											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	28460799	28460799	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HERC2	NM_004667	exon39	c.G6178C	p.A2060P	AGGGTGCGTGCCC	.	101	65	123	0	.	234	G	28460799	C	G	28460799	3	3	116	1	0	0	0	0	1	0	0	0	7058	768	27	4	8546	4	HERC2	15	28460799	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10		28460799	74070593	205	14133											
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42137485	42137485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	JMJD7-PLA2G4B	NM_005090	exon19	c.A2017G	p.K673E	AACACCAAAGGGC	.	48	8	85	0	.	135	G	42137485	A	G	42137485	3	3	116	1	0	0	0	0	1	0	0	0	7955	131	5	2	2091	2	JMJD7-PLA2G4B	15	42137485	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	13676686	42137485	60393907	206	14134											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43700285	43700285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TP53BP1	NM_001141980	exon27	c.C5602A	p.Q1868K	GGGGTTGCCTATG	.	35	5	71	0	.	294	T	43700285	G	T	43700285	3	4	116	1	0	0	0	0	1	0	0	0	16380	1333	46	3	339	3	TP53BP1	15	43700285	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	1562800	43700285	58831107	207	14135											
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48577419	48577419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC12A1	NM_001184832	exon21	c.A2602T	p.N868Y	AAGTTGAACATTA	.	156	90	223	1	.	24	T	48577419	A	T	48577419	3	4	116	1	0	0	0	0	1	0	0	0	14382	246	9	4	2780	4	SLC12A1	15	48577419	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4877134	48577419	53953973	208	14136											
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	55931838	55931838	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRTG	NM_173814	exon14	c.2324+2T>A	.	CTACATACGTTTG	.	91	31	102	0	.	92	T	55931838	A	T	55931838	5	4	116	1	0	0	0	0	0	0	1	0	12638	405	14	4	1158	4	PRTG	15	55931838	Splice_Site	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	7354419	55931838	46599554	209	14137											
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56388218	56388218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RFX7	NM_022841	exon9	c.G1708A	p.G570R	TCTGCCCCAAAAG	.	29	7	64	0	.	90	T	56388218	C	T	56388218	3	4	116	1	0	0	0	0	1	0	0	0	13268	623	22	3	2678	3	RFX7	15	56388218	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	456380	56388218	46143174	210	14138											
IGDCC4	57722	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65689172	65689172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IGDCC4	NM_020962	exon6	c.G997T	p.A333S	CCTCACCCAGCAC	.	26	6	42	0	.	93	A	65689172	C	A	65689172	3	1	116	1	0	0	0	0	1	0	0	0	7569	637	22	3	2815	3	IGDCC4	15	65689172	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	9300954	65689172	36842220	211	14139											
RLBP1	6017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89754011	89754011	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RLBP1	NM_000326	exon8	c.C714A	p.I238I	GAAGTGGATGGCT	.	211	87	202	0	.	90	T	89754011	G	T	89754011	2	4	116	1	0	0	0	0	0	0	0	1	13388	1164	41	3		3	RLBP1	15	89754011	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	24064839	89754011	12777381	212	14140											
FLYWCH1	84256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2980531	2980531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FLYWCH1	NM_020912	exon4	c.A443G	p.Q148R	GCCGCCAACATGC	.	69	27	50	0	.	22	G	2980531	A	G	2980531	3	3	116	1	0	0	0	0	1	0	0	0	5947	130	5	2	449	2	FLYWCH1	16	2980531	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		2980531	87374222	213	14141											
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	3085406	3085406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001103175	exon1	c.T92A	p.L31Q	CGCTCCAGCACAA	.	66	39	59	0	.	.	T	3085406	A	T	3085406	3	4	116	1	0	0	0	0	1	0	0	0	2836	188	7	4	1470	4	CCDC64B	16	3085406	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	104875	3085406	87269347	214	14142											
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15727694	15727694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KIAA0430	NM_014647	exon5	c.C1013A	p.P338Q	ACTTCTGGTGACC	.	133	51	110	0	.	90	T	15727694	G	T	15727694	3	4	116	1	0	0	0	0	1	0	0	0	8177	1348	47	3	4310	3	KIAA0430	16	15727694	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	12642288	15727694	74627059	215	14143											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15853461	15853461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MYH11	NM_001040114	exon13	c.T1394A	p.L465Q	ATATCCAGGATCC	.	125	63	122	0	.	666	T	15853461	A	T	15853461	3	4	116	1	0	0	0	0	1	0	0	0	10031	188	7	4	4700	4	MYH11	16	15853461	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	125767	15853461	74501292	216	14144											
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53341643	53341643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CHD9	NM_025134	exon33	c.A6831C	p.K2277N	TCTGAAAGGAAAG	.	183	31	165	0	.	272	C	53341643	A	C	53341643	3	2	116	1	0	0	0	0	1	0	0	0	3332	69	3	5	6957	5	CHD9	16	53341643	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	37488182	53341643	37013110	217	14145											
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57608882	57608882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GPR114	NM_153837	exon11	c.A1364G	p.D455G	GCCATGACACTGT	.	36	6	36	0	.	90	G	57608882	A	G	57608882	3	3	116	1	0	0	0	0	1	0	0	0	6631	275	10	2	1402	2	GPR114	16	57608882	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4267239	57608882	32745871	218	14146											
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57731872	57731872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CCDC135	NM_032269	exon2	c.T11A	p.L4Q	AGGTCCTGAGGGA	.	39	8	52	0	.	90	A	57731872	T	A	57731872	3	1	116	1	0	0	0	0	1	0	0	0	2769	1580	55	4	13	4	CCDC135	16	57731872	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	122990	57731872	32622881	219	14147											
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67662374	67662374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CTCF	NM_006565	exon9	c.G1620A	p.M540I	CGACATGCACTTC	.	178	113	168	0	.	91	A	67662374	G	A	67662374	3	1	116	1	0	0	0	0	1	0	0	0	4000	1319	46	3	1646	3	CTCF	16	67662374	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	9930502	67662374	22692379	220	14148											
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67985728	67985728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC12A4	NM_001145962	exon7	c.A1136T	p.Q379L	CCACCCTGGAGCA	.	72	44	55	0	.	91	A	67985728	T	A	67985728	3	1	116	1	0	0	0	0	1	0	0	0	14385	1580	55	4	2195	4	SLC12A4	16	67985728	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	323354	67985728	22369025	221	14149											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70852337	70852337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HYDIN	NM_001270974	exon84	c.A14566T	p.N4856Y	GAGGGTTCTCCAA	.	77	16	69	0	.	92	A	70852337	T	A	70852337	3	1	116	1	0	0	0	0	1	0	0	0	7467	1783	62	4	811	4	HYDIN	16	70852337	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2866609	70852337	19502416	222	14150											
CDH15	1013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89256721	89256721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CDH15	NM_004933	exon8	c.C1049A	p.A350E	TGCAGGCGGCTGC	.	111	22	161	0	.	523	A	89256721	C	A	89256721	3	1	116	1	0	0	0	0	1	0	0	0	3100	768	27	1	1079	1	CDH15	16	89256721	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	18404384	89256721	1098032	223	14151											
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7251303	7251303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ACAP1	NM_014716	exon15	c.T1406A	p.L469Q	CAGAACTAGTGAA	.	25	17	38	0	.	153	A	7251303	T	A	7251303	3	1	116	1	0	0	0	0	1	0	0	0	118	1522	53	4	1464	4	ACAP1	17	7251303	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		7251303	73943907	224	14152											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577531	7577538	+	Frame_Shift_Del	DEL	GGGCCTCC	GGGCCTCC	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	GGGCCTCC	GGGCCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.743_750del	p.248_250del	GAGGATGGGCCTC	.	25	18	77	0	.	70225	-	7577538	GGGCCTCC	-	7577531	7	5	116	1	0	1	0	1	0	0	0	0	16378	1335	47	0	540	0	TP53	17	7577531	Frame_Shift_Del	DEL	GGGCCTCC	TCGA-ED-A7PZ-01A-11D-A33Q-10	326228	7577531	73617679	225	14153											
SHMT1	6470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	18250860	18250860	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SHMT1	NM_148918	exon5	c.A469T	p.K157X	TCTTCTTGTCTGT	.	137	43	86	0	.	91	A	18250860	T	A	18250860	4	1	116	1	0	0	0	0	0	1	0	0	14285	1821	63	4	1014	4	SHMT1	17	18250860	Nonsense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	10673329	18250860	62944350	226	14154											
RDM1	201299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34257110	34257110	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RDM1	NM_001034836	exon2	c.G246T	p.R82R	CTGCTTCCGGTCG	.	158	31	104	0	.	228	A	34257110	C	A	34257110	2	1	116	1	0	0	0	0	0	0	0	1	13197	842	30	3		3	RDM1	17	34257110	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	16006250	34257110	46938100	227	14155											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140202	39140202	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_182497	exon3	c.C324A	p.R108R	CAGGCTGCGCACC	.	120	46	93	0	.	.	T	39140202	G	T	39140202	2	4	116	1	0	0	0	0	0	0	0	1	8478	1306	46	3		3	KRT40	17	39140202	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	4883092	39140202	42055008	228	14156											
KRT37	8688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39579146	39579146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KRT37	NM_003770	exon3	c.G616A	p.D206N	ACTTGTCCGCCTC	.	49	25	50	0	.	91	T	39579146	C	T	39579146	3	4	116	1	0	0	0	0	1	0	0	0	8474	855	30	3	753	3	KRT37	17	39579146	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	438944	39579146	41616064	229	14157											
KRT35	3886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39637038	39637038	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KRT35	NM_002280	exon1	c.G312C	p.L104L	GTCGTTCAGGGAT	.	103	57	96	0	.	92	G	39637038	C	G	39637038	2	3	116	1	0	0	0	0	0	0	0	1	8472	813	29	4		4	KRT35	17	39637038	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	57892	39637038	41558172	230	14158											
AOC2	314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41001329	41001329	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AOC2	NM_009590	exon2	c.C1815G	p.S605R	CCACAGCCCCCTT	.	117	23	99	0	.	92	G	41001329	C	G	41001329	3	3	116	1	0	0	0	0	1	0	0	0	727	738	26	4	1821	4	AOC2	17	41001329	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	1364291	41001329	40193881	231	14159											
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45897358	45897358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OSBPL7	NM_145798	exon3	c.G180T	p.W60C	CAGAGGCCACTTC	.	38	20	30	0	.	68	A	45897358	C	A	45897358	3	1	116	1	0	0	0	0	1	0	0	0	11282	740	26	3	2432	3	OSBPL7	17	45897358	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	4896029	45897358	35297852	232	14160											
DLX4	1748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48050405	48050405	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DLX4	NM_001934	exon1	c.C36A	p.L12L	CCTCCTCGCCCCC	.	292	113	283	0	.	90	A	48050405	C	A	48050405	2	1	116	1	0	0	0	0	0	0	0	1	4573	871	31	1		1	DLX4	17	48050405	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	2153047	48050405	33144805	233	14161											
PPM1E	22843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57057829	57057829	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PPM1E	NM_014906	exon7	c.T1705A	p.Y569N	CCAGGCTACCTAG	.	119	47	133	0	.	291	A	57057829	T	A	57057829	3	1	116	1	0	0	0	0	1	0	0	0	12338	1522	53	4	1731	4	PPM1E	17	57057829	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	9007424	57057829	24137381	234	14162											
LRRC37A3	374819	broad.mit.edu;bcgsc.ca	37	17	62892240	62892240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LRRC37A3	NM_199340	exon3	c.A1136G	p.Q379R	TCCTGCTGGGTCG	.	257	42	243	0	.	90	C	62892240	T	C	62892240	3	2	116	1	0	0	0	0	1	0	0	0	8993	1580	55	2	3816	2	LRRC37A3	17	62892240	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	5834411	62892240	18302970	235	14163											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67283767	67283767	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCA5	NM_018672	exon14	c.T2028A	p.A676A	AATGTCAGCTTCA	.	106	19	87	0	.	93	T	67283767	A	T	67283767	2	4	116	1	0	0	0	0	0	0	0	1	35	175	7	4		4	ABCA5	17	67283767	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	4391527	67283767	13911443	236	14164											
AZI1	22994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79193699	79193699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AZI1	NM_014984	exon2	c.A158T	p.E53V	TTCTGCTCGCTGC	.	92	18	93	0	.	136	A	79193699	T	A	79193699	3	1	116	1	0	0	0	0	1	0	0	0	1240	1551	54	4	3184	4	AZI1	17	79193699	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	11909932	79193699	2001511	237	14165											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2732311	2732311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SMCHD1	NM_015295	exon25	c.A3097T	p.S1033C	CTTCCCAGTAGCC	.	176	80	194	0	.	46	T	2732311	A	T	2732311	3	4	116	1	0	0	0	0	1	0	0	0	14788	188	7	4	3195	4	SMCHD1	18	2732311	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		2732311	75344937	238	14166											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7949192	7949192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PTPRM	NM_001105244	exon6	c.G677A	p.R226Q	ATGTGCGAGATGC	.	54	11	72	0	.	228	A	7949192	G	A	7949192	3	1	116	1	0	0	0	0	1	0	0	0	12806	1058	37	1	699	1	PTPRM	18	7949192	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	5216881	7949192	70128056	239	14167											
IMPA2	3613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12028869	12028869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IMPA2	NM_014214	exon7	c.G628T	p.A210S	ACATTGGCACTCT	.	58	23	61	0	.	226	T	12028869	G	T	12028869	3	4	116	1	0	0	0	0	1	0	0	0	7723	1203	42	3	654	3	IMPA2	18	12028869	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	4079677	12028869	66048379	240	14168											
B4GALT6	9331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29264373	29264373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	B4GALT6	NM_004775	exon1	c.G17A	p.R6Q	ATCATCCGCCTGA	.	58	11	72	0	.	90	T	29264373	C	T	29264373	3	4	116	1	0	0	0	0	1	0	0	0	1275	652	23	1	1167	1	B4GALT6	18	29264373	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	17235504	29264373	48812875	241	14169											
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44408008	44408008	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PIAS2	NM_173206	exon11	c.A1422C	p.I474I	GCTTTCTATTGTA	.	71	33	97	0	.	662	G	44408008	T	G	44408008	2	3	116	1	0	0	0	0	0	0	0	1	11876	1512	53	5		5	PIAS2	18	44408008	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	15143635	44408008	33669240	242	14170											
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59158023	59158023	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CDH20	NM_031891	exon1	c.T237C	p.Y79Y	TTTGTATGTCGGC	.	112	47	131	0	.	155	C	59158023	T	C	59158023	2	2	116	1	0	0	0	0	0	0	0	1	3106	1471	51	2		2	CDH20	18	59158023	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	14750015	59158023	18919225	243	14171											
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61325773	61325773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SERPINB3	NM_006919	exon5	c.A443G	p.N148S	CAGGAGTTAATCT	.	113	22	106	0	.	228	C	61325773	T	C	61325773	3	2	116	1	0	0	0	0	1	0	0	0	14102	1725	60	2	745	2	SERPINB3	18	61325773	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2167750	61325773	16751475	244	14172											
GRIN3B	116444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1005395	1005395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GRIN3B	NM_138690	exon3	c.T1895A	p.V632E	GCACCGTGTCCAG	.	97	70	128	0	.	90	A	1005395	T	A	1005395	3	1	116	1	0	0	0	0	1	0	0	0	6784	1696	59	4	1905	4	GRIN3B	19	1005395	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10		1005395	58123588	245	14173											
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1796124	1796124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_138813	exon17	c.C1894A	p.L632M	TGGCCAGGACCTG	.	75	36	94	0	.	.	T	1796124	G	T	1796124	3	4	116	1	0	0	0	0	1	0	0	0	1196	991	35	3	2090	3	ATP8B3	19	1796124	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	790729	1796124	57332859	246	14174											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9071656	9071656	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC16	NM_024690	exon3	c.T15790G	p.S5264A	CTGCAGATTTTGT	.	50	22	95	0	.	566	C	9071656	A	C	9071656	3	2	116	1	0	0	0	0	1	0	0	0	9973	333	12	5	28061	5	MUC16	19	9071656	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	7275532	9071656	50057327	247	14175											
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10624601	10624601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	S1PR5	NM_030760	exon2	c.T1087A	p.S363T	GCTCCGAGCCGCT	.	18	15	46	0	.	523	T	10624601	A	T	10624601	3	4	116	1	0	0	0	0	1	0	0	0	13797	304	11	4	113	4	S1PR5	19	10624601	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	1552945	10624601	48504382	248	14176											
RTBDN	83546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12936625	12936625	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RTBDN	NM_031429	exon7	c.A681T	p.G227G	CCGTCGTCCTGGT	.	105	89	156	0	.	90	A	12936625	T	A	12936625	2	1	116	1	0	0	0	0	0	0	0	1	13717	1654	58	4		4	RTBDN	19	12936625	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2312024	12936625	46192358	249	14177											
FCHO1	23149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17886926	17886926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FCHO1	NM_001161358	exon15	c.C1138A	p.L380I	GCACAGCTCAGGG	.	34	32	45	0	.	90	A	17886926	C	A	17886926	3	1	116	1	0	0	0	0	1	0	0	0	5787	797	28	3	1188	3	FCHO1	19	17886926	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	4950301	17886926	41242057	250	14178											
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20308783	20308783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF486	NM_052852	exon4	c.A1264G	p.T422A	AATCTAACTGAAC	.	71	28	113	0	.	47	G	20308783	A	G	20308783	3	3	116	1	0	0	0	0	1	0	0	0	17936	43	2	2	1278	2	ZNF486	19	20308783	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	2421857	20308783	38820200	251	14179											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36214899	36214899	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MLL4	NM_014727	exon8	c.C3325T	p.R1109X	ACCCCCCGAGAAA	.	137	21	72	0	.	697	T	36214899	C	T	36214899	4	4	116	1	0	0	0	0	0	1	0	0	9623	644	23	1	3355	1	MLL4	19	36214899	Nonsense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	15906116	36214899	22914084	252	14180											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38572737	38572737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SIPA1L3	NM_015073	exon3	c.G532A	p.E178K	CTCAGCGAGTGTG	.	58	11	37	0	.	91	A	38572737	G	A	38572737	3	1	116	1	0	0	0	0	1	0	0	0	14331	1059	37	1	534	1	SIPA1L3	19	38572737	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	2357838	38572737	20556246	253	14181											
ACTN4	81	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39207845	39207845	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ACTN4	NM_004924	exon10	c.G1032A	p.P344P	CAAGCCGCCCAAG	.	176	14	101	0	.	90	A	39207845	G	A	39207845	2	1	116	1	0	0	0	0	0	0	0	1	207	1074	38	1		1	ACTN4	19	39207845	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	635108	39207845	19921138	254	14182											
CEACAM7	1087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42187899	42187899	+	Missense_Mutation	SNP	T	T	A	rs201378485	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CEACAM7	NM_006890	exon3	c.A523T	p.T175S	AGGTTGTGTTCTG	.	130	86	91	0	T|1.000;C|0.000	92	A	42187899	T	A	42187899	3	1	116	1	0	0	0	0	1	0	0	0	3197	1696	59	4	282	4	CEACAM7	19	42187899	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2980054	42187899	16941084	255	14183											
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44271859	44271859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNN4	NM_002250	exon8	c.A1120G	p.M374V	TGTGCATCTGGGT	.	82	49	69	0	.	92	C	44271859	T	C	44271859	3	2	116	1	0	0	0	0	1	0	0	0	8081	1449	50	2	167	2	KCNN4	19	44271859	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2083960	44271859	14857124	256	14184											
PTGIR	5739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47127137	47127137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PTGIR	NM_000960	exon2	c.G346A	p.E116K	AGCGCTCCACGGC	.	98	20	57	0	.	522	T	47127137	C	T	47127137	3	4	116	1	0	0	0	0	1	0	0	0	12751	864	30	3	822	3	PTGIR	19	47127137	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	2855278	47127137	12001846	257	14185											
TPRX1	284355	broad.mit.edu;bcgsc.ca	37	19	48305315	48305315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TPRX1	NM_198479	exon2	c.C953G	p.P318R	GGAGCTGGGACTG	.	58	7	35	0	.	90	C	48305315	G	C	48305315	3	2	116	1	0	0	0	0	1	0	0	0	16419	1348	47	4	286	4	TPRX1	19	48305315	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	1178178	48305315	10823668	258	14186											
TPRX1	284355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	48305786	48305786	+	Missense_Mutation	SNP	G	G	A	rs202132729		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TPRX1	NM_198479	exon2	c.C482T	p.A161V	ATCGGGGCTGGGC	.	221	23	135	1	.	90	A	48305786	G	A	48305786	3	1	116	1	0	0	0	0	1	0	0	0	16419	1203	42	3	757	3	TPRX1	19	48305786	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	471	48305786	10823197	259	14187											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50102990	50102992	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRR12	NM_020719	exon5	c.4140_4142del	p.1380_1381del	CTCCTTCTCCTCG	.	126	23	86	0	.	70	-	50102992	CTC	-	50102990	7	5	116	1	0	1	0	1	0	0	0	0	12584	912	32	0	4158	0	PRR12	19	50102990	In_Frame_Del	DEL	CTC	TCGA-ED-A7PZ-01A-11D-A33Q-10	1797204	50102990	9025993	260	14188											
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53056843	53056843	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001039886	exon5	c.A674T	p.H225L	AAGTACACATGAG	.	153	98	70	0	.	.	T	53056843	A	T	53056843	3	4	116	1	0	0	0	0	1	0	0	0	18170	159	6	4	684	4	ZNF808	19	53056843	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	2953853	53056843	6072140	261	14189											
BIRC8	112401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53793422	53793422	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BIRC8	NM_033341	exon1	c.T206A	p.L69Q	TCTAGCAGATATT	.	196	124	132	0	.	227	T	53793422	A	T	53793422	3	4	116	1	0	0	0	0	1	0	0	0	1440	188	7	4	508	4	BIRC8	19	53793422	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	736579	53793422	5335561	262	14190											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55493848	55493848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NLRP2	NM_017852	exon6	c.T782A	p.L261Q	CAGAGCTGGTCTT	.	177	48	123	0	.	120	A	55493848	T	A	55493848	3	1	116	1	0	0	0	0	1	0	0	0	10477	1580	55	4	800	4	NLRP2	19	55493848	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	1700426	55493848	3635135	263	14191											
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58453484	58453484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF256	NM_005773	exon3	c.G692C	p.G231A	AGGTCTCCCTGGT	.	201	25	106	0	.	92	G	58453484	C	G	58453484	3	3	116	1	0	0	0	0	1	0	0	0	17796	855	30	4	1195	4	ZNF256	19	58453484	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	2959636	58453484	675499	264	14192											
TASP1	55617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13550171	13550171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TASP1	NM_017714	exon7	c.C551A	p.P184H	ATGTTAGGAGGGC	.	44	30	43	0	.	90	T	13550171	G	T	13550171	3	4	116	1	0	0	0	0	1	0	0	0	15586	1000	35	3	743	3	TASP1	20	13550171	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10		13550171	49475349	265	14193											
GZF1	64412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23350846	23350846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GZF1	NM_022482	exon5	c.C1904T	p.S635L	AGCTTTCGGATAA	.	119	13	177	0	.	91	T	23350846	C	T	23350846	3	4	116	1	0	0	0	0	1	0	0	0	6914	893	31	1	1922	1	GZF1	20	23350846	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	9800675	23350846	39674674	266	14194											
C20orf112	140688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31043960	31043960	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C20orf112	NM_001256798	exon6	c.G1080A	p.L360L	GCTCCGCAGCCCG	.	48	12	56	0	.	514	T	31043960	C	T	31043960	2	4	116	1	0	0	0	0	0	0	0	1	2081	697	25	3		3	C20orf112	20	31043960	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	7693114	31043960	31981560	267	14195											
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43942173	43942173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RBPJL	NM_014276	exon7	c.C685T	p.R229C	TCCACACGCTACC	.	65	47	59	0	.	227	T	43942173	C	T	43942173	3	4	116	1	0	0	0	0	1	0	0	0	13162	536	19	1	711	1	RBPJL	20	43942173	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	12898213	43942173	19083347	268	14196											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47273608	47273608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PREX1	NM_020820	exon18	c.T2093A	p.L698Q	AGGCGCAGAGGGC	.	45	13	36	0	.	231	T	47273608	A	T	47273608	3	4	116	1	0	0	0	0	1	0	0	0	12476	188	7	4	2978	4	PREX1	20	47273608	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	3331435	47273608	15751912	269	14197											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	47444283	47444283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PREX1	NM_020820	exon1	c.G115A	p.A39T	GGGCGGCCGCGCA	.	62	16	70	0	.	231	T	47444283	C	T	47444283	3	4	116	1	0	0	0	0	1	0	0	0	12476	739	26	3	5024	3	PREX1	20	47444283	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	170675	47444283	15581237	270	14198											
ATP9A	10079	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50305604	50305604	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ATP9A	NM_006045	exon9	c.A798T	p.S266S	CTCACCTGATGCG	.	102	64	99	1	.	94	A	50305604	T	A	50305604	2	1	116	1	0	0	0	0	0	0	0	1	1198	1594	55	4		4	ATP9A	20	50305604	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2861321	50305604	12719916	271	14199											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50782528	50782528	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZFP64	NM_018197	exon3	c.A323T	p.Q108L	TAAGTTTGATAGC	.	94	66	107	0	.	155	A	50782528	T	A	50782528	3	1	116	1	0	0	0	0	1	0	0	0	17649	1812	63	4	2929	4	ZFP64	20	50782528	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	476924	50782528	12242992	272	14200											
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58318246	58318246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PHACTR3	NM_080672	exon2	c.T203A	p.L68Q	GCAAACTGGCCAC	.	154	107	194	0	.	93	A	58318246	T	A	58318246	3	1	116	1	0	0	0	0	1	0	0	0	11811	1580	55	4	209	4	PHACTR3	20	58318246	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	7535718	58318246	4707274	273	14201											
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60713291	60713291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PSMA7	NM_002792	exon5	c.A527G	p.Y176C	TCAGTATAGTTCT	.	138	95	143	0	.	90	C	60713291	T	C	60713291	3	2	116	1	0	0	0	0	1	0	0	0	12672	1406	49	2	231	2	PSMA7	20	60713291	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	2395045	60713291	2312229	274	14202											
GATA5	140628	hgsc.bcm.edu;mdanderson.org	37	20	61040413	61040413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GATA5	NM_080473	exon6	c.C1021A	p.P341T	TGCTGGGCCCAGG	.	13	8	8	0	.	90	T	61040413	G	T	61040413	3	4	116	1	0	0	0	0	1	0	0	0	6257	1203	42	3	180	3	GATA5	20	61040413	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	327122	61040413	1985107	275	14203											
ITGB2	3689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46308698	46308698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ITGB2	NM_000211	exon14	c.G1990C	p.E664Q	CCCTCTCCTTGCA	.	34	23	37	0	.	717	G	46308698	C	G	46308698	3	3	116	1	0	0	0	0	1	0	0	0	7894	864	30	4	331	4	ITGB2	21	46308698	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10		46308698	1821197	276	14204											
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47333904	47333904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PCBP3	NM_020528	exon8	c.C640T	p.P214S	CCAAAGCCCGCCT	.	26	11	33	0	.	227	T	47333904	C	T	47333904	3	4	116	1	0	0	0	0	1	0	0	0	11502	739	26	3	670	3	PCBP3	21	47333904	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	1025206	47333904	795991	277	14205											
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21377002	21377002	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_005446	exon4	c.A425T	p.E142V	TCGACGAGGACTG	.	98	30	80	0	.	.	T	21377002	A	T	21377002	3	4	116	1	0	0	0	0	1	0	0	0	11344	304	11	4	439	4	P2RX6	22	21377002	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10		21377002	29927564	278	14206											
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38823554	38823554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNJ4	NM_004981	exon2	c.T584A	p.V195E	TCGCGCACCGAAA	.	55	31	44	0	.	90	T	38823554	A	T	38823554	3	4	116	1	0	0	0	0	1	0	0	0	8053	159	6	4	757	4	KCNJ4	22	38823554	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	17446552	38823554	12481012	279	14207											
PNPLA3	80339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	44332942	44332942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PNPLA3	NM_025225	exon6	c.A769T	p.R257W	TGCAACAGGCCCC	.	50	17	49	0	.	90	T	44332942	A	T	44332942	3	4	116	1	0	0	0	0	1	0	0	0	12166	179	7	4	791	4	PNPLA3	22	44332942	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	5509388	44332942	6971624	280	14208											
PRR5-ARHGAP8	553158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45210622	45210622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRR5-ARHGAP8	NM_181334	exon8	c.T736G	p.L246V	AACATCTTGAAGC	.	88	21	79	0	.	161	G	45210622	T	G	45210622	3	3	116	1	0	0	0	0	1	0	0	0	12601	1606	56	5	766	5	PRR5-ARHGAP8	22	45210622	Missense_Mutation	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	877680	45210622	6093944	281	14209											
MBTPS2	51360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21887622	21887622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MBTPS2	NM_015884	exon7	c.C796T	p.P266S	GACTCTCCTGCCA	.	69	64	60	0	.	91	T	21887622	C	T	21887622	3	4	116	1	0	0	0	0	1	0	0	0	9362	855	30	3	822	3	MBTPS2	23	21887622	Missense_Mutation	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10		21887622	133382938	282	14210											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32429921	32429921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DMD	NM_004006	exon30	c.C4181A	p.A1394E	TAAGCTGCCAACT	.	60	60	54	0	.	265	T	32429921	G	T	32429921	3	4	116	1	0	0	0	0	1	0	0	0	4580	1319	46	3	7224	3	DMD	23	32429921	Missense_Mutation	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	10542299	32429921	122840639	283	14211											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	39932115	39932115	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BCOR	NM_001123385	exon4	c.A2484T	p.A828A	ACTCTCTGCTGCA	.	44	39	63	0	.	229	A	39932115	T	A	39932115	2	1	116	1	0	0	0	0	0	0	0	1	1386	1567	55	4		4	BCOR	23	39932115	Silent	SNP	T	TCGA-ED-A7PZ-01A-11D-A33Q-10	7502194	39932115	115338445	284	14212											
MAOA	4128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	43603116	43603116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MAOA	NM_000240	exon13	c.A1338T	p.E446D	CATGGAAGGGGCA	.	34	31	43	0	.	194	T	43603116	A	T	43603116	3	4	116	1	0	0	0	0	1	0	0	0	9225	69	3	4	1388	4	MAOA	23	43603116	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	3671001	43603116	111667444	285	14213											
PRAF2	11230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48931536	48931536	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRAF2	NM_007213	exon1	c.C111A	p.V37V	GTTGATGACGCGG	.	41	34	25	0	.	130	T	48931536	G	T	48931536	2	4	116	1	0	0	0	0	0	0	0	1	12422	1277	45	3		3	PRAF2	23	48931536	Silent	SNP	G	TCGA-ED-A7PZ-01A-11D-A33Q-10	5328420	48931536	106339024	286	14214											
OPHN1	4983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	67293091	67293091	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OPHN1	NM_002547	exon20	c.T1737A	p.P579P	CACCCGAGGCGGA	.	98	91	97	0	.	110	T	67293091	A	T	67293091	2	4	116	1	0	0	0	0	0	0	0	1	10875	291	11	4		4	OPHN1	23	67293091	Silent	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	18361555	67293091	87977469	287	14215											
IL13RA2	3598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114249118	114249118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IL13RA2	NM_000640	exon4	c.T266A	p.L89Q	TAATGTAGATTCT	.	43	40	54	0	.	132	T	114249118	A	T	114249118	3	4	116	1	0	0	0	0	1	0	0	0	7630	420	15	4	904	4	IL13RA2	23	114249118	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	46956027	114249118	41021442	288	14216											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118223434	118223434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KIAA1210	NM_020721	exon11	c.T1759A	p.L587M	AGGACAAGTGCGA	.	42	40	42	0	.	67	T	118223434	A	T	118223434	3	4	116	1	0	0	0	0	1	0	0	0	8214	69	3	4	3386	4	KIAA1210	23	118223434	Missense_Mutation	SNP	A	TCGA-ED-A7PZ-01A-11D-A33Q-10	3974316	118223434	37047126	289	14217											
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140994576	140994576	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MAGEC1	NM_005462	exon4	c.C1386A	p.S462S	GAGTTCCCCTGAG	.	121	12	123	0	.	133	A	140994576	C	A	140994576	2	1	116	1	0	0	0	0	0	0	0	1	9180	610	22	3		3	MAGEC1	23	140994576	Silent	SNP	C	TCGA-ED-A7PZ-01A-11D-A33Q-10	22771142	140994576	14275984	290	14218											
TAS1R3	83756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1266874	1266874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TAS1R3	NM_152228	exon1	c.G149A	p.G50D	AGGCTGGCCTCCG	.	40	6	31	0	.	22	A	1266874	G	A	1266874	3	1	117	1	0	0	0	0	1	0	0	0	15561	1203	42	3	151	3	TAS1R3	1	1266874	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		1266874	247983747	1	14219											
UBR4	23352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19408022	19408022	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	UBR4	NM_020765	exon103	c.G15054T	p.L5018L	CTGTTCCAGAAAG	.	91	24	56	1	.	612	A	19408022	C	A	19408022	2	1	117	1	0	0	0	0	0	0	0	1	16901	581	21	3		3	UBR4	1	19408022	Silent	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	18141148	19408022	229842599	2	14220											
FAF1	11124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51323604	51323604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FAF1	NM_007051	exon2	c.A111T	p.L37F	TACCACTAAGTCC	.	260	42	223	0	.	652	A	51323604	T	A	51323604	3	1	117	1	0	0	0	0	1	0	0	0	5369	1519	53	4	1913	4	FAF1	1	51323604	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	31915582	51323604	197927017	3	14221											
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66713174	66713174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PDE4B	NM_001037341	exon4	c.C313G	p.R105G	CCAGGTCGGAGTC	.	91	26	99	0	.	92	G	66713174	C	G	66713174	3	3	117	1	0	0	0	0	1	0	0	0	11640	875	31	4	563	4	PDE4B	1	66713174	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	15389570	66713174	182537447	4	14222											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281994	152281994	+	Missense_Mutation	SNP	G	G	T	rs200622741	alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FLG	NM_002016	exon3	c.C5368A	p.Q1790K	ATCTTTGTCTTCC	.	122	31	125	0	.	106	T	152281994	G	T	152281994	3	4	117	1	0	0	0	0	1	0	0	0	5922	1386	48	3	6821	3	FLG	1	152281994	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	85568820	152281994	96968627	5	14223											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185902929	185902929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HMCN1	NM_031935	exon11	c.G1801A	p.A601T	TCATCAGCCGCTT	.	68	10	55	0	.	113	A	185902929	G	A	185902929	3	1	117	1	0	0	0	0	1	0	0	0	7220	971	34	3	1843	3	HMCN1	1	185902929	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	33620935	185902929	63347692	6	14224											
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200562884	200562884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIF14	NM_014875	exon15	c.T2563G	p.F855V	CACCAAAATTTTT	.	79	14	73	0	.	140	C	200562884	A	C	200562884	3	2	117	1	0	0	0	0	1	0	0	0	8276	14	1	5	2447	5	KIF14	1	200562884	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	14659955	200562884	48687737	7	14225											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201196308	201196308	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	IGFN1	NM_001164586	exon23	c.A11085T	p.A3695A	CCAGGCAGTCAGC	.	45	17	29	0	.	71	T	201196308	A	T	201196308	2	4	117	1	0	0	0	0	0	0	0	1	7590	175	7	4		4	IGFN1	1	201196308	Silent	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	633424	201196308	48054313	8	14226											
CENPO	79172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25016357	25016357	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CENPO	NM_001199803	exon1	c.C15T	p.L5L	AATTCTCGCTTCT	.	94	24	63	0	.	91	T	25016357	C	T	25016357	2	4	117	1	0	0	0	0	0	0	0	1	3239	899	31	1		1	CENPO	2	25016357	Silent	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10		25016357	218183016	9	14227											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37295937	37295937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HEATR5B	NM_019024	exon8	c.G1064A	p.R355Q	ACACATCGTCTGG	.	65	13	53	0	.	142	T	37295937	C	T	37295937	3	4	117	1	0	0	0	0	1	0	0	0	7032	884	31	1	5267	1	HEATR5B	2	37295937	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	12279580	37295937	205903436	10	14228											
NAGK	55577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71304745	71304745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	NAGK	NM_017567	exon9	c.A961T	p.S321C	TGGAAGAGCTGGG	.	61	10	47	0	.	115	T	71304745	A	T	71304745	3	4	117	1	0	0	0	0	1	0	0	0	10142	304	11	4	995	4	NAGK	2	71304745	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	34008808	71304745	171894628	11	14229											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197081786	197081786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HECW2	NM_020760	exon27	c.G4440T	p.W1480C	CCAGAACCACCGA	.	93	18	88	0	.	668	A	197081786	C	A	197081786	3	1	117	1	0	0	0	0	1	0	0	0	7043	508	18	3	290	3	HECW2	2	197081786	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	125777041	197081786	46117587	12	14230											
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48451118	48451118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PLXNB1	NM_001130082	exon33	c.G5800T	p.D1934Y	GGTCATCCACGAA	.	93	10	74	0	.	293	A	48451118	C	A	48451118	3	1	117	1	0	0	0	0	1	0	0	0	12123	855	30	3	631	3	PLXNB1	3	48451118	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10		48451118	149571312	13	14231											
KIAA1524	57650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108281998	108281998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1524	NM_020890	exon13	c.C1609G	p.P537A	GCAGTGGAGCAGC	.	200	34	174	1	.	92	C	108281998	G	C	108281998	3	2	117	1	0	0	0	0	1	0	0	0	8239	1174	41	4	1144	4	KIAA1524	3	108281998	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	59830880	108281998	89740432	14	14232											
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147113833	147113833	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ZIC4	NM_001168378	exon3	c.G644C	p.G215A	TCCGGGCCGCCGA	.	61	8	65	0	.	91	G	147113833	C	G	147113833	3	3	117	1	0	0	0	0	1	0	0	0	17678	739	26	4	522	4	ZIC4	3	147113833	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	38831835	147113833	50908597	15	14233											
HTR3C	170572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	183772621	183772621	+	Nonsense_Mutation	SNP	C	C	A	rs180785188	alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HTR3C	NM_130770	exon2	c.C180A	p.Y60X	CAACTACAGCATC	.	81	16	56	0	C|0.999;T|0.001	154	A	183772621	C	A	183772621	4	1	117	1	0	0	0	0	0	1	0	0	7446	489	17	3	186	3	HTR3C	3	183772621	Nonsense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	36658788	183772621	14249809	16	14234											
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195512519	195512519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MUC4	NM_018406	exon2	c.T5932C	p.S1978P	CTGTGGACACTGA	.	159	7	114	1	.	90	G	195512519	A	G	195512519	3	3	117	1	0	0	0	0	1	0	0	0	9978	275	10	2		2	MUC4	3	195512519	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	11739898	195512519	2509911	17	14235											
WDR19	57728	broad.mit.edu;bcgsc.ca	37	4	39246144	39246144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	WDR19	NM_025132	exon23	c.G2617T	p.A873S	AAAGCAGCATCTG	.	93	7	86	0	.	67	T	39246144	G	T	39246144	3	4	117	1	0	0	0	0	1	0	0	0	17276	971	34	3	2707	3	WDR19	4	39246144	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		39246144	151908132	18	14236											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57180856	57180856	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1211	NM_020722	exon8	c.G1188A	p.A396A	GGGCGCGGAGGAG	.	41	15	26	0	.	70	A	57180856	G	A	57180856	2	1	117	1	0	0	0	0	0	0	0	1	8215	1103	39	1		1	KIAA1211	4	57180856	Silent	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	17934712	57180856	133973420	19	14237											
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164393739	164393739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TKTL2	NM_032136	exon1	c.G1148T	p.R383L	CGACCACGTGTAG	.	61	11	72	0	.	95	A	164393739	C	A	164393739	3	1	117	1	0	0	0	0	1	0	0	0	15933	536	19	1	736	1	TKTL2	4	164393739	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	107212883	164393739	26760537	20	14238											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177041041	177041041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	WDR17	NM_170710	exon5	c.T403C	p.C135R	AGTTGGTGCTGGA	.	179	20	181	0	.	95	C	177041041	T	C	177041041	3	2	117	1	0	0	0	0	1	0	0	0	17274	1696	59	2	417	2	WDR17	4	177041041	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	12647302	177041041	14113235	21	14239											
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64079679	64079679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CWC27	NM_005869	exon4	c.G269T	p.R90L	ATTCACGGTTGCG	.	77	18	69	0	.	90	T	64079679	G	T	64079679	3	4	117	1	0	0	0	0	1	0	0	0	4070	1116	39	1	283	1	CWC27	5	64079679	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		64079679	116835581	22	14240											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82836639	82836639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	VCAN	NM_004385	exon8	c.A7817G	p.H2606R	AACCACATGACAG	.	74	21	74	0	.	238	G	82836639	A	G	82836639	3	3	117	1	0	0	0	0	1	0	0	0	17135	217	8	2	7843	2	VCAN	5	82836639	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	18756960	82836639	98078621	23	14241											
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101592902	101592902	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SLCO4C1	NM_180991	exon8	c.A1386G	p.G462G	TGCAACTCCAGAT	.	353	73	272	0	.	93	C	101592902	T	C	101592902	2	2	117	1	0	0	0	0	0	0	0	1	14730	1538	54	2		2	SLCO4C1	5	101592902	Silent	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	18756263	101592902	79322358	24	14242											
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43401071	43401071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ABCC10	NM_001198934	exon3	c.G1353A	p.M451I	GGAAATGCTACAG	.	63	8	49	0	.	96	A	43401071	G	A	43401071	3	1	117	1	0	0	0	0	1	0	0	0	50	1319	46	3	1226	3	ABCC10	6	43401071	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		43401071	127713996	25	14243											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75887438	75887438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	COL12A1	NM_004370	exon12	c.T2378C	p.I793T	TCAGGAATTACAG	.	139	25	140	0	.	142	G	75887438	A	G	75887438	3	3	117	1	0	0	0	0	1	0	0	0	3669	101	4	2	7033	2	COL12A1	6	75887438	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	32486367	75887438	95227629	26	14244											
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80197406	80197406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	LCA5	NM_001122769	exon8	c.A1409G	p.K470R	TTCAGTTTAGCAA	.	231	49	242	0	.	90	C	80197406	T	C	80197406	3	2	117	1	0	0	0	0	1	0	0	0	8656	1841	64	2	688	2	LCA5	6	80197406	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	4309968	80197406	90917661	27	14245											
SNAP91	9892	broad.mit.edu;ucsc.edu	37	6	84270663	84270663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SNAP91	NM_001242792	exon26	c.G2446T	p.G816X	CAGCTCCTTGCTA	.	120	27	116	1	.	23	A	84270663	C	A	84270663	4	1	117	1	0	0	0	0	0	1	0	0	14833	690	24	3	289	3	SNAP91	6	84270663	Nonsense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	4073257	84270663	86844404	28	14246											
MYB	4602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135515497	135515497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MYB	NM_001161656	exon8	c.C847A	p.H283N	CAGAGACACTATA	.	62	9	61	0	.	838	A	135515497	C	A	135515497	3	1	117	1	0	0	0	0	1	0	0	0	10007	478	17	3	877	3	MYB	6	135515497	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	51244834	135515497	35599570	29	14247											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138603314	138603314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1549	NM_020910	exon2	c.C1058T	p.A353V	CTGAATGCAAGGG	.	55	9	32	0	.	369	A	138603314	G	A	138603314	3	1	117	1	0	0	0	0	1	0	0	0	8244	1319	46	3	4870	3	KIAA1549	7	138603314	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		138603314	20535349	30	14248											
OR2A5	393046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143748366	143748366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	OR2A5	NM_012365	exon1	c.G872T	p.S291I	TCTATAGCCTGAG	.	34	5	31	0	.	93	T	143748366	G	T	143748366	3	4	117	1	0	0	0	0	1	0	0	0	10981	971	34	3	874	3	OR2A5	7	143748366	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	5145052	143748366	15390297	31	14249											
PLAG1	5324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	57080762	57080762	+	Missense_Mutation	SNP	G	G	A	rs144724863		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PLAG1	NM_001114634	exon3	c.C67T	p.R23C	GCTTACGTTTCCC	.	98	8	110	0	G|1.000;A|0.000	1107	A	57080762	G	A	57080762	3	1	117	1	0	0	0	0	1	0	0	0	12018	1145	40	1	1443	1	PLAG1	8	57080762	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		57080762	89283260	32	14250											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	68864764	68864764	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PREX2	NM_025170	exon1	c.G135T	p.L45L	GTTCCTGGTGTCG	.	113	14	101	0	.	390	T	68864764	G	T	68864764	2	4	117	1	0	0	0	0	0	0	0	1	12477	1335	47	3		3	PREX2	8	68864764	Silent	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	11784002	68864764	77499258	33	14251											
ANGPT1	284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108348431	108348431	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ANGPT1	NM_001199859	exon3	c.G522C	p.E174D	TTGCTTCTCTAGC	.	157	32	133	0	.	521	G	108348431	C	G	108348431	3	3	117	1	0	0	0	0	1	0	0	0	610	912	32	4	1002	4	ANGPT1	8	108348431	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	39483667	108348431	38015591	34	14252											
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	371468	371468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DOCK8	NM_203447	exon17	c.G1909T	p.A637S	CTCCCCGCTAAGC	.	117	20	109	0	.	517	T	371468	G	T	371468	3	4	117	1	0	0	0	0	1	0	0	0	4693	1087	38	1	1975	1	DOCK8	9	371468	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		371468	140841963	35	14253											
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32489378	32489378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DDX58	NM_014314	exon6	c.A763G	p.M255V	CTTTCATAGCAGG	.	190	25	130	0	.	230	C	32489378	T	C	32489378	3	2	117	1	0	0	0	0	1	0	0	0	4375	1406	49	2	2066	2	DDX58	9	32489378	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	32117910	32489378	108724053	36	14254											
S1PR3	1903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91616133	91616133	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	S1PR3	NM_005226	exon2	c.G18A	p.P6P	CCTCCCGCCGCGT	.	48	10	43	0	.	949	A	91616133	G	A	91616133	2	1	117	1	0	0	0	0	0	0	0	1	13795	1074	38	1		1	S1PR3	9	91616133	Silent	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	59126755	91616133	49597298	37	14255											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73330627	73330627	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CDH23	NM_052836	exon8	c.C705A	p.I235I	CCCCATCTTCATC	.	83	13	105	0	.	563	A	73330627	C	A	73330627	2	1	117	1	0	0	0	0	0	0	0	1	3108	903	32	3		3	CDH23	10	73330627	Silent	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10		73330627	62204120	38	14256											
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	985500	985500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	AP2A2	NM_001242837	exon8	c.C883T	p.P295S	GAACCGCCCAAGT	.	46	8	27	0	.	90	T	985500	C	T	985500	3	4	117	1	0	0	0	0	1	0	0	0	740	739	26	3	910	3	AP2A2	11	985500	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10		985500	134021016	39	14257											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66460755	66460755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SPTBN2	NM_006946	exon23	c.G4756T	p.D1586Y	GGGCATCCTCCAG	.	41	15	52	0	.	155	A	66460755	C	A	66460755	3	1	117	1	0	0	0	0	1	0	0	0	15119	855	30	3	2476	3	SPTBN2	11	66460755	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	65475255	66460755	68545761	40	14258											
KLHL35	283212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75134789	75134789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001039548	exon5	c.T1510A	p.Y504N	GATCATAGGTGAA	.	32	9	35	0	.	.	T	75134789	A	T	75134789	3	4	117	1	0	0	0	0	1	0	0	0	8388	420	15	4	249	4	KLHL35	11	75134789	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	8674034	75134789	59871727	41	14259											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103006470	103006470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DYNC2H1	NM_001377	exon17	c.G2367C	p.R789S	ATTCAGGCCCCCT	.	140	32	144	0	.	68	C	103006470	G	C	103006470	3	2	117	1	0	0	0	0	1	0	0	0	4846	1194	42	4	2433	4	DYNC2H1	11	103006470	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	27871681	103006470	32000046	42	14260											
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20769305	20769305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PDE3A	NM_000921	exon4	c.G1411A	p.A471T	CAGGAAGCACCTT	.	40	9	47	0	.	94	A	20769305	G	A	20769305	3	1	117	1	0	0	0	0	1	0	0	0	11637	971	34	3	1425	3	PDE3A	12	20769305	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		20769305	113082590	43	14261											
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111655734	111655734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CUX2	NM_015267	exon3	c.A215T	p.Q72L	GCTTCCAAGCCGA	.	53	11	36	0	.	140	T	111655734	A	T	111655734	3	4	117	1	0	0	0	0	1	0	0	0	4065	130	5	4	225	4	CUX2	12	111655734	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	90886429	111655734	22196161	44	14262											
CLIP1	6249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122845703	122845703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CLIP1	NM_002956	exon5	c.G808A	p.G270S	ACAAGCCATATTT	.	62	15	50	0	.	155	T	122845703	C	T	122845703	3	4	117	1	0	0	0	0	1	0	0	0	3532	594	21	3	3559	3	CLIP1	12	122845703	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	11189969	122845703	11006192	45	14263											
C14orf37	145407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58478850	58478850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	C14orf37	NM_001001872	exon6	c.A2108G	p.K703R	TTTAATTTTTCCA	.	573	89	446	0	.	90	C	58478850	T	C	58478850	3	2	117	1	0	0	0	0	1	0	0	0	1771	1841	64	2	228	2	C14orf37	14	58478850	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10		58478850	48870690	46	14264											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63468076	63468076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KCNH5	NM_172375	exon4	c.C406A	p.Q136K	TTGGCTGTTTGAA	.	94	16	68	0	.	98	T	63468076	G	T	63468076	3	4	117	1	0	0	0	0	1	0	0	0	8035	1386	48	3	2626	3	KCNH5	14	63468076	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	4989226	63468076	43881464	47	14265											
AHSA1	10598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77931884	77931884	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	AHSA1	NM_012111	exon6	c.T564G	p.A188A	ACAGGCTAAGCCT	.	36	7	31	0	.	226	G	77931884	T	G	77931884	2	3	117	1	0	0	0	0	0	0	0	1	418	1509	53	5		5	AHSA1	14	77931884	Silent	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	14463808	77931884	29417656	48	14266											
RSL24D1	51187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	55475581	55475581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RSL24D1	NM_016304	exon5	c.A350G	p.E117G	TGTAGCTCTTTAT	.	166	25	130	1	.	91	C	55475581	T	C	55475581	3	2	117	1	0	0	0	0	1	0	0	0	13701	1551	54	2	149	2	RSL24D1	15	55475581	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10		55475581	47055811	49	14267											
ALDH1A2	8854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58254254	58254254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ALDH1A2	NM_003888	exon10	c.G1207T	p.V403L	AAAACACTGTGGG	.	158	25	148	0	.	226	A	58254254	C	A	58254254	3	1	117	1	0	0	0	0	1	0	0	0	491	565	20	3	365	3	ALDH1A2	15	58254254	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	2778673	58254254	44277138	50	14268											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24831569	24831569	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TNRC6A	NM_014494	exon22	c.G5190A	p.P1730P	TGCTCCGTCCCGC	.	121	28	100	0	.	92	A	24831569	G	A	24831569	2	1	117	1	0	0	0	0	0	0	0	1	16337	1132	40	1		1	TNRC6A	16	24831569	Silent	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		24831569	65523184	51	14269											
ABR	29	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	909328	909328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ABR	NM_021962	exon23	c.G2572A	p.D858N	ACACGTCGGTGGA	.	29	8	36	0	.	91	T	909328	C	T	909328	3	4	117	1	0	0	0	0	1	0	0	0	99	884	31	1	11	1	ABR	17	909328	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10		909328	80285882	52	14270											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577511	7577511	+	Missense_Mutation	SNP	A	A	G	rs28934577	bycluster;alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	TP53,NS,carcinoma,0	TP53	NM_000546	exon7	c.T770C	p.L257P	TCTTCCAGTGTGA	.	64	17	80	0	A|1.000;|0.000	70225	G	7577511	A	G	7577511	3	3	117	1	0	0	0	0	1	0	0	0	16378	188	7	2	520	2	TP53	17	7577511	Missense_Mutation	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	6668183	7577511	73617699	53	14271											
DDX5	1655	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62498310	62498310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DDX5	NM_004396	exon10	c.A1126G	p.S376G	GTTGACTCTTGTC	.	125	16	82	1	.	228	C	62498310	T	C	62498310	3	2	117	1	0	0	0	0	1	0	0	0	4367	1551	54	2	734	2	DDX5	17	62498310	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	54920799	62498310	18696900	54	14272											
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14748990	14748990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	EMR3	NM_032571	exon11	c.G1411A	p.G471S	CATAGCCGACTGG	.	88	18	52	0	.	528	T	14748990	C	T	14748990	3	4	117	1	0	0	0	0	1	0	0	0	5106	652	23	1	571	1	EMR3	19	14748990	Missense_Mutation	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10		14748990	44379993	55	14273											
OR10H5	284433	broad.mit.edu;mdanderson.org	37	19	15905584	15905584	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	OR10H5	NM_001004466	exon1	c.T726C	p.C242C	CACCTGTGCCTCT	.	114	16	84	1	.	69	C	15905584	T	C	15905584	2	2	117	1	0	0	0	0	0	0	0	1	10909	1702	59	2		2	OR10H5	19	15905584	Silent	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	1156594	15905584	43223399	56	14274											
SLC7A9	11136	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	33349420	33349420	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SLC7A9	NM_001243036	exon9	c.T903A	p.A301A	CCAAGAAGCAGGA	.	19	5	11	0	.	91	T	33349420	A	T	33349420	2	4	117	1	0	0	0	0	0	0	0	1	14705	59	3	4		4	SLC7A9	19	33349420	Silent	SNP	A	TCGA-ED-A7XO-01A-11D-A34Z-10	17443836	33349420	25779563	57	14275											
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25203506	25203506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ENTPD6	NM_001247	exon12	c.G1078T	p.V360L	GCCAGAGTGTCAG	.	55	12	39	0	.	90	T	25203506	G	T	25203506	3	4	117	1	0	0	0	0	1	0	0	0	5143	1029	36	3	1127	3	ENTPD6	20	25203506	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		25203506	37822014	58	14276											
CTNNBL1	56259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36470822	36470822	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CTNNBL1	NM_030877	exon13	c.1392+1G>A	.	AAACACGTATGTA	.	89	17	78	0	.	228	A	36470822	G	A	36470822	5	1	117	1	0	0	0	0	0	0	1	0	4018	1159	40	1	1443	1	CTNNBL1	20	36470822	Splice_Site	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10	11267316	36470822	26554698	59	14277											
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29695604	29695604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	EWSR1	NM_013986	exon17	c.G1709T	p.R570I	GTGGCAGAGGTGG	.	116	21	107	0	.	3375	T	29695604	G	T	29695604	3	4	117	1	0	0	0	0	1	0	0	0	5296	942	33	3	1873	3	EWSR1	22	29695604	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		29695604	21608962	60	14278											
RAI2	10742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	17819379	17819379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RAI2	NM_001172739	exon3	c.C752T	p.P251L	GGCATCGGGATGG	.	63	19	53	0	.	131	A	17819379	G	A	17819379	3	1	117	1	0	0	0	0	1	0	0	0	13009	1116	39	1	844	1	RAI2	23	17819379	Missense_Mutation	SNP	G	TCGA-ED-A7XO-01A-11D-A34Z-10		17819379	137451181	61	14279											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23398175	23398175	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PTCHD1	NM_173495	exon2	c.C819A	p.V273V	CCTGGTCACCAGC	.	59	21	48	0	.	135	A	23398175	C	A	23398175	2	1	117	1	0	0	0	0	0	0	0	1	12732	813	29	3		3	PTCHD1	23	23398175	Silent	SNP	C	TCGA-ED-A7XO-01A-11D-A34Z-10	5578796	23398175	131872385	62	14280											
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135441570	135441570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	GPR112	NM_153834	exon11	c.T7100C	p.L2367S	ATCAATTGACGTT	.	167	63	111	0	.	183	C	135441570	T	C	135441570	3	2	117	1	0	0	0	0	1	0	0	0	6629	1821	63	2	7130	2	GPR112	23	135441570	Missense_Mutation	SNP	T	TCGA-ED-A7XO-01A-11D-A34Z-10	112043395	135441570	19828990	63	14281											
USP48	84196	broad.mit.edu;bcgsc.ca	37	1	22084268	22084268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	USP48	NM_001032730	exon2	c.G143A	p.C48Y	CCTTTGCAGTTTC	.	46	14	88	1	.	659	T	22084268	C	T	22084268	3	4	118	1	0	0	0	0	1	0	0	0	17076	710	25	3	3076	3	USP48	1	22084268	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		22084268	227166353	1	14282											
NDUFS5	4725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39494585	39494585	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NDUFS5	NM_001184979	exon2	c.C189T	p.F63F	TGATTTCGTAGAG	.	86	31	89	0	.	90	T	39494585	C	T	39494585	2	4	118	1	0	0	0	0	0	0	0	1	10295	883	31	1		1	NDUFS5	1	39494585	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	17410317	39494585	209756036	2	14283											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65306964	65306964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	JAK1	NM_002227	exon19	c.A2613C	p.E871D	GCGCTTTTCAAAA	.	129	45	145	0	.	3900	G	65306964	T	G	65306964	3	3	118	1	0	0	0	0	1	0	0	0	7937	1838	64	5	879	5	JAK1	1	65306964	Missense_Mutation	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10	25812379	65306964	183943657	3	14284											
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113098573	113098573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ST7L	NM_138729	exon12	c.C1313T	p.A438V	GCAATTGCTTCAC	.	63	20	55	0	.	90	A	113098573	G	A	113098573	3	1	118	1	0	0	0	0	1	0	0	0	15229	1319	46	3	469	3	ST7L	1	113098573	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	47791609	113098573	136152048	4	14285											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701775	181701775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CACNA1E	NM_001205293	exon20	c.C2553A	p.S851R	CATCAGCCGTGGG	.	98	18	61	0	.	95	A	181701775	C	A	181701775	3	1	118	1	0	0	0	0	1	0	0	0	2542	738	26	3	2631	3	CACNA1E	1	181701775	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	68603202	181701775	67548846	5	14286											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185976272	185976272	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	HMCN1	NM_031935	exon30	c.G4488A	p.L1496L	ATTTTTGGGCGAT	.	172	139	119	0	.	113	A	185976272	G	A	185976272	2	1	118	1	0	0	0	0	0	0	0	1	7220	1339	47	3		3	HMCN1	1	185976272	Silent	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	4274497	185976272	63274349	6	14287											
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210856666	210856666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KCNH1	NM_172362	exon11	c.C2927A	p.P976Q	GACTGTGGCCTCG	.	130	15	85	0	.	94	T	210856666	G	T	210856666	3	4	118	1	0	0	0	0	1	0	0	0	8031	1348	47	3	46	3	KCNH1	1	210856666	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	24880394	210856666	38393955	7	14288											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211749034	211749047	+	Frame_Shift_Del	DEL	AAAACGTCTTTAAT	AAAACGTCTTTAAT	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	AAAACGTCTTTAAT	AAAACGTCTTTAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC30A1	NM_021194	exon2	c.1207_1220del	p.403_407del	TTATGAAAAACGT	.	95	65	77	0	.	93	-	211749047	AAAACGTCTTTAAT	-	211749034	7	5	118	1	0	1	0	1	0	0	0	0	14553	14	1	0	307	0	SLC30A1	1	211749034	Frame_Shift_Del	DEL	AAAACGTCTTTAAT	TCGA-ED-A7XP-01A-11D-A34Z-10	892368	211749034	37501587	8	14289											
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226590006	226590006	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PARP1	NM_001618	exon2	c.G195A	p.R65R	AGGGTGCCGGATG	.	40	31	26	0	.	727	T	226590006	C	T	226590006	2	4	118	1	0	0	0	0	0	0	0	1	11454	726	26	3		3	PARP1	1	226590006	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	14840972	226590006	22660615	9	14290											
TPO	7173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1440139	1440139	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TPO	NM_175719	exon5	c.A465T	p.T155T	CATCACAGGAGCT	.	89	31	91	1	.	332	T	1440139	A	T	1440139	2	4	118	1	0	0	0	0	0	0	0	1	16407	175	7	4		4	TPO	2	1440139	Silent	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10		1440139	241759234	10	14291											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21233705	21233705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	APOB	NM_000384	exon26	c.G6035A	p.R2012Q	AGAGTTCGTCCAG	.	194	57	217	0	.	175	T	21233705	C	T	21233705	3	4	118	1	0	0	0	0	1	0	0	0	785	884	31	1	7672	1	APOB	2	21233705	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	19793566	21233705	221965668	11	14292											
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107460245	107460245	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ST6GAL2	NM_032528	exon2	c.C189A	p.G63G	TGCGGCGCCCATG	.	40	16	32	0	.	191	T	107460245	G	T	107460245	2	4	118	1	0	0	0	0	0	0	0	1	15221	1074	38	1		1	ST6GAL2	2	107460245	Silent	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	86226540	107460245	135739128	12	14293											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196891574	196891574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DNAH7	NM_018897	exon7	c.C577A	p.P193T	GTTGTGGAACTAA	.	89	26	105	0	.	102	T	196891574	G	T	196891574	3	4	118	1	0	0	0	0	1	0	0	0	4606	1174	41	3	11733	3	DNAH7	2	196891574	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	89431329	196891574	46307799	13	14294											
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210561763	210561763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MAP2	NM_002374	exon9	c.C4510T	p.R1504W	GTTAAGCGGAAAA	.	81	29	99	0	.	591	T	210561763	C	T	210561763	3	4	118	1	0	0	0	0	1	0	0	0	9235	759	27	1	4532	1	MAP2	2	210561763	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	13670189	210561763	32637610	14	14295											
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211455540	211455540	+	Missense_Mutation	SNP	G	G	A	rs148654695		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CPS1	NM_001122633	exon10	c.G875A	p.R292H	GTGATCGCAAGGA	.	40	16	61	0	G|0.999;A|0.000	162	A	211455540	G	A	211455540	3	1	118	1	0	0	0	0	1	0	0	0	3823	1087	38	1	913	1	CPS1	2	211455540	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	893777	211455540	31743833	15	14296											
INHA	3623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220439974	220439974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INHA	NM_002191	exon2	c.G827T	p.W276L	TGGGCTGGGAACG	.	102	37	89	0	.	91	T	220439974	G	T	220439974	3	4	118	1	0	0	0	0	1	0	0	0	7740	1357	47	3	833	3	INHA	2	220439974	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	8984434	220439974	22759399	16	14297											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225376243	225376243	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CUL3	NM_001257198	exon6	c.A729G	p.V243V	AGCTTCTACTTTC	.	154	47	202	0	.	229	C	225376243	T	C	225376243	2	2	118	1	0	0	0	0	0	0	0	1	4056	1509	53	2		2	CUL3	2	225376243	Silent	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10	4936269	225376243	17823130	17	14298											
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu	37	3	20181810	20181810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KAT2B	NM_003884	exon13	c.G1958T	p.R653L	ATCCACGGATCCC	.	95	4	71	0	.	228	T	20181810	G	T	20181810	3	4	118	1	0	0	0	0	1	0	0	0	7982	1116	39	1	2008	1	KAT2B	3	20181810	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10		20181810	177840620	18	14299											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	TGGACTCTGGAAT	.	149	16	215	1	.	24361	G	41266101	C	G	41266101	3	3	118	1	0	0	0	0	1	0	0	0	4016	913	32	4	104	4	CTNNB1	3	41266101	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	21084291	41266101	156756329	19	14300											
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119133178	119133178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ARHGAP31	NM_020754	exon12	c.A2402C	p.K801T	TTTCAAAGGGCGG	.	35	12	46	0	.	92	C	119133178	A	C	119133178	3	2	118	1	0	0	0	0	1	0	0	0	880	72	3	5	2448	5	ARHGAP31	3	119133178	Missense_Mutation	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	77867077	119133178	78889252	20	14301											
SEC22A	26984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	122978413	122978413	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SEC22A	NM_012430	exon6	c.700delG	p.G234fs	TTCCTTGGAACAG	.	339	113	373	0	.	91	-	122978413	G	-	122978413	7	5	118	1	0	1	0	1	0	0	0	0	13988	1349	47	0	718	0	SEC22A	3	122978413	Frame_Shift_Del	DEL	G	TCGA-ED-A7XP-01A-11D-A34Z-10	3845235	122978413	75044017	21	14302											
TMEM44	93109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	194336377	194336377	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TMEM44	NM_001166305	exon8	c.974delG	p.G325fs	GCAAATCCTAAGG	.	120	45	167	0	.	90	-	194336377	C	-	194336377	7	5	118	1	0	1	0	1	0	0	0	0	16165	855	30	0	503	0	TMEM44	3	194336377	Frame_Shift_Del	DEL	C	TCGA-ED-A7XP-01A-11D-A34Z-10	71357964	194336377	3686053	22	14303											
UGT2B28	54490	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70160294	70160294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	UGT2B28	NM_053039	exon6	c.C1357T	p.P453S	GATCAACCAGTAA	.	46	21	70	1	.	91	T	70160294	C	T	70160294	3	4	118	1	0	0	0	0	1	0	0	0	16957	507	18	3	1379	3	UGT2B28	4	70160294	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		70160294	120993982	23	14304											
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87683886	87683886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PTPN13	NM_080683	exon24	c.C3560A	p.S1187Y	TGCCTTCTACTCC	.	48	24	82	0	.	230	A	87683886	C	A	87683886	3	1	118	1	0	0	0	0	1	0	0	0	12782	913	32	3	3650	3	PTPN13	4	87683886	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	17523592	87683886	103470390	24	14305											
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	110384263	110384263	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SEC24B	NM_006323	exon2	c.C340T	p.Q114X	GGAGCACAGCAGT	.	37	21	88	0	.	137	T	110384263	C	T	110384263	4	4	118	1	0	0	0	0	0	1	0	0	13995	479	17	3	346	3	SEC24B	4	110384263	Nonsense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	22700377	110384263	80770013	25	14306											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599650	3599650	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IRX1	NM_024337	exon2	c.C588A	p.R196R	AGCGCGCAGCAAG	.	68	31	60	0	.	228	A	3599650	C	A	3599650	2	1	118	1	0	0	0	0	0	0	0	1	7843	697	25	3		3	IRX1	5	3599650	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		3599650	177315610	26	14307											
KIAA1586	57691	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56918371	56918371	+	Silent	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KIAA1586	NM_020931	exon4	c.A1074C	p.I358I	AACTATAGCAGAG	.	91	38	115	2	.	44	C	56918371	A	C	56918371	2	2	118	1	0	0	0	0	0	0	0	1	8245	410	15	5		5	KIAA1586	6	56918371	Silent	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10		56918371	114196696	27	14308											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	71003965	71003965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	COL9A1	NM_001851	exon5	c.601delA	p.I201fs	ATTCAATCCTGTT	.	114	45	121	0	.	94	-	71003965	T	-	71003965	7	5	118	1	0	1	0	1	0	0	0	0	3707	1435	50	0	2376	0	COL9A1	6	71003965	Frame_Shift_Del	DEL	T	TCGA-ED-A7XP-01A-11D-A34Z-10	14085594	71003965	100111102	28	14309											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90484380	90484380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MDN1	NM_014611	exon13	c.C1894T	p.R632W	GAAGCCGCACTCG	.	148	10	163	0	.	100	A	90484380	G	A	90484380	3	1	118	1	0	0	0	0	1	0	0	0	9415	1086	38	1	15256	1	MDN1	6	90484380	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	19480415	90484380	80630687	29	14310											
DDO	8528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110714035	110714035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DDO	NM_003649	exon5	c.G1053T	p.R351S	CACCAGCCTGGCG	.	30	14	46	1	.	155	A	110714035	C	A	110714035	3	1	118	1	0	0	0	0	1	0	0	0	4334	738	26	3	60	3	DDO	6	110714035	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	20229655	110714035	60401032	30	14311											
WISP3	8838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112375575	112375575	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	WISP3	NM_198239	exon1	c.C69A	p.L23L	GCTCCTCTTCTCC	.	75	13	62	0	.	90	A	112375575	C	A	112375575	2	1	118	1	0	0	0	0	0	0	0	1	17371	900	32	3		3	WISP3	6	112375575	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	1661540	112375575	58739492	31	14312											
WDR27	253769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170033072	170033072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	WDR27	NM_182552	exon21	c.C2194T	p.R732W	CAGGCCGTGAGTG	.	54	13	51	1	.	69	A	170033072	G	A	170033072	3	1	118	1	0	0	0	0	1	0	0	0	17281	1144	40	1	399	1	WDR27	6	170033072	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	57657497	170033072	1081995	32	14313											
LMTK2	22853	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	97833378	97833378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LMTK2	NM_014916	exon13	c.G4363T	p.A1455S	CCACCGGCCCGGA	.	25	9	51	0	.	1381	T	97833378	G	T	97833378	3	4	118	1	0	0	0	0	1	0	0	0	8859	1203	42	3	4413	3	LMTK2	7	97833378	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10		97833378	61305285	33	14314											
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	106545719	106545719	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PIK3CG	NM_002649	exon11	c.A3196T	p.K1066X	GCTAAAAAGTATT	.	123	37	160	0	.	1316	T	106545719	A	T	106545719	4	4	118	1	0	0	0	0	0	1	0	0	11916	15	1	4	3234	4	PIK3CG	7	106545719	Nonsense_Mutation	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	8712341	106545719	52592944	34	14315											
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155094008	155094008	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INSIG1	NM_005542	exon4	c.C585T	p.A195A	AGCAGCCCTATCT	.	221	67	239	0	.	90	T	155094008	C	T	155094008	2	4	118	1	0	0	0	0	0	0	0	1	7765	610	22	3		3	INSIG1	7	155094008	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	48548289	155094008	4044655	35	14316											
CHD7	55636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61693771	61693771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CHD7	NM_017780	exon3	c.C1878A	p.N626K	AGATAACCAAGAA	.	24	5	30	0	.	141	A	61693771	C	A	61693771	3	1	118	1	0	0	0	0	1	0	0	0	3330	506	18	3	1884	3	CHD7	8	61693771	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		61693771	84670251	36	14317											
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101237520	101237520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SPAG1	NM_003114	exon14	c.C1808T	p.S603L	TGATCTCAAAACA	.	65	12	66	0	.	92	T	101237520	C	T	101237520	3	4	118	1	0	0	0	0	1	0	0	0	14975	838	29	3	1858	3	SPAG1	8	101237520	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	39543749	101237520	45126502	37	14318											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777646	18777646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ADAMTSL1	NM_001040272	exon19	c.G3419A	p.G1140D	TGTCTGGCTTCAG	.	28	14	39	0	.	230	A	18777646	G	A	18777646	3	1	118	1	0	0	0	0	1	0	0	0	274	1203	42	3	3497	3	ADAMTSL1	9	18777646	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10		18777646	122435785	38	14319											
IFNA13	3447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21367937	21367937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IFNA13	NM_006900	exon1	c.T73G	p.C25G	GATCACAGCCCAG	.	86	11	120	0	.	23	C	21367937	A	C	21367937	3	2	118	1	0	0	0	0	1	0	0	0	7533	188	7	5	503	5	IFNA13	9	21367937	Missense_Mutation	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	2590291	21367937	119845494	39	14320											
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21971111	21971111	+	Missense_Mutation	SNP	G	G	C	rs121913385	alternate_allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	CDKN2A,NS,carcinoma,+1	CDKN2A	NM_058195	exon2	c.C290G	p.A97G	CGTCGTGCACGGG	.	35	17	71	0	.	23992	C	21971111	G	C	21971111	3	2	118	1	0	0	0	0	1	0	0	0	3161	1319	46	4	231	4	CDKN2A	9	21971111	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	603174	21971111	119242320	40	14321											
C9orf135	138255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	72459518	72459518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C9orf135	NM_001010940	exon2	c.C238T	p.R80X	TATCGGCGACTGG	.	43	13	76	0	.	69	T	72459518	C	T	72459518	4	4	118	1	0	0	0	0	0	1	0	0	2458	760	27	1	244	1	C9orf135	9	72459518	Nonsense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	50488407	72459518	68753913	41	14322											
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109773122	109773122	+	Silent	SNP	G	G	A	rs147574890	byfrequency	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF462	NM_021224	exon13	c.G7332A	p.K2444K	CACCAAGCAGGTG	.	28	8	41	0	G|0.999;A|0.001	95	A	109773122	G	A	109773122	2	1	118	1	0	0	0	0	0	0	0	1	17923	962	34	3		3	ZNF462	9	109773122	Silent	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	37313604	109773122	31440309	42	14323											
ENTPD1	953	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97599472	97599472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ENTPD1	NM_001164178	exon3	c.T205C	p.S69P	GCGGGTTCTTCTC	.	170	51	227	2	.	93	C	97599472	T	C	97599472	3	2	118	1	0	0	0	0	1	0	0	0	5138	1783	62	2	276	2	ENTPD1	10	97599472	Missense_Mutation	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10		97599472	37935275	43	14324											
ZNF195	7748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3380429	3380429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF195	NM_001130520	exon6	c.G1809T	p.E603D	GGGTTTCTCTCCA	.	83	35	100	1	.	90	A	3380429	C	A	3380429	3	1	118	1	0	0	0	0	1	0	0	0	17755	912	32	3	84	3	ZNF195	11	3380429	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		3380429	131626087	44	14325											
CFL1	1072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65623665	65623665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CFL1	NM_005507	exon2	c.A52T	p.M18L	CCTTCATGTCGTT	.	62	23	79	0	.	90	A	65623665	T	A	65623665	3	1	118	1	0	0	0	0	1	0	0	0	3290	1464	51	4	460	4	CFL1	11	65623665	Missense_Mutation	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10	62243236	65623665	69382851	45	14326											
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93494680	93494680	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C11orf54	NM_014039	exon8	c.625-1G>A	.	ATCTTAGGGGTTT	.	140	40	129	0	.	90	A	93494680	G	A	93494680	5	1	118	1	0	0	0	0	0	0	1	0	1649	1014	35	3	650	3	C11orf54	11	93494680	Splice_Site	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	27871015	93494680	41511836	46	14327											
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104819259	104819259	+	Splice_Site	SNP	C	C	A	rs144482787	alternate_allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CASP4	NM_033306	exon7	c.757+1G>T	.	TACATACGTGGCG	.	46	15	70	0	C|1.000;T|0.000	660	A	104819259	C	A	104819259	5	1	118	1	0	0	0	0	0	0	1	0	2673	550	19	1	219	1	CASP4	11	104819259	Splice_Site	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	11324579	104819259	30187257	47	14328											
ARCN1	372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118452209	118452209	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ARCN1	NM_001655	exon2	c.G252A	p.R84R	CCTAAGGCTCTTC	.	56	25	70	0	.	90	A	118452209	G	A	118452209	2	1	118	1	0	0	0	0	0	0	0	1	842	1194	42	3		3	ARCN1	11	118452209	Silent	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	13632950	118452209	16554307	48	14329											
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	443421	443421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KDM5A	NM_001042603	exon11	c.C1476G	p.I492M	GTAGTTGATGGAA	.	86	39	148	0	.	227	C	443421	G	C	443421	3	2	118	1	0	0	0	0	1	0	0	0	8133	1280	45	4	3668	4	KDM5A	12	443421	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10		443421	133408474	49	14330											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50869602	50869602	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LARP4	NM_052879	exon16	c.A2130G	p.R710R	GACTCGACGTAAT	.	91	20	141	0	.	91	G	50869602	A	G	50869602	2	3	118	1	0	0	0	0	0	0	0	1	8630	262	10	2		2	LARP4	12	50869602	Silent	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	50426181	50869602	82982293	50	14331											
MYF5	4617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	81112792	81112792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MYF5	NM_005593	exon3	c.730delG	p.G244fs	ACTCCAGGGGCTT	.	75	22	77	0	.	91	-	81112792	G	-	81112792	7	5	118	1	0	1	0	1	0	0	0	0	10027	1000	35	0	740	0	MYF5	12	81112792	Frame_Shift_Del	DEL	G	TCGA-ED-A7XP-01A-11D-A34Z-10	30243190	81112792	52739103	51	14332											
FGF14	2259	bcgsc.ca;mdanderson.org	37	13	102379114	102379114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	FGF14	NM_175929	exon4	c.A470C	p.N157T	TAATAATTTTCAA	.	88	32	136	0	.	586	G	102379114	T	G	102379114	3	3	118	1	0	0	0	0	1	0	0	0	5843	1493	52	5	296	5	FGF14	13	102379114	Missense_Mutation	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10		102379114	12790764	52	14333											
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111141810	111141810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	COL4A2	NM_001846	exon35	c.G3226C	p.G1076R	GCCCCAGGGAGAG	.	66	15	107	0	.	95	C	111141810	G	C	111141810	3	2	118	1	0	0	0	0	1	0	0	0	3690	1000	35	4	3360	4	COL4A2	13	111141810	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	8762696	111141810	4028068	53	14334											
SLC7A7	9056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23242904	23242904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC7A7	NM_001126105	exon11	c.A1451C	p.Q484P	AGGACCTGGAGGT	.	52	17	78	0	.	154	G	23242904	T	G	23242904	3	3	118	1	0	0	0	0	1	0	0	0	14703	1580	55	5	88	5	SLC7A7	14	23242904	Missense_Mutation	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10		23242904	84106636	54	14335											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	36008806	36008806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RALGAPA1	NM_194301	exon40	c.G6194A	p.S2065N	CTTTTGCTAGTTC	.	64	18	65	0	.	138	T	36008806	C	T	36008806	3	4	118	1	0	0	0	0	1	0	0	0	13013	797	28	3	61	3	RALGAPA1	14	36008806	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	12765902	36008806	71340734	55	14336											
GPHN	10243	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	67389470	67389470	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	GPHN	NM_001024218	exon7	c.G544T	p.E182X	CATGATGAACTTG	.	23	15	87	1	.	228	T	67389470	G	T	67389470	4	4	118	1	0	0	0	0	0	1	0	0	6610	1291	45	3	570	3	GPHN	14	67389470	Nonsense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	31380664	67389470	39960070	56	14337											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089754	86089754	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	FLRT2	NM_013231	exon2	c.G1896A	p.G632G	AAATGGGGGCATT	.	55	26	81	0	.	94	A	86089754	G	A	86089754	2	1	118	1	0	0	0	0	0	0	0	1	5939	1219	43	3		3	FLRT2	14	86089754	Silent	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	18700284	86089754	21259786	57	14338											
PGP	283871	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2264015	2264015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PGP	NM_001042371	exon2	c.A680G	p.Q227R	TGGCGCTGGGCGG	.	32	11	50	1	.	23	C	2264015	T	C	2264015	3	2	118	1	0	0	0	0	1	0	0	0	11802	1580	55	2	289	2	PGP	16	2264015	Missense_Mutation	SNP	T	TCGA-ED-A7XP-01A-11D-A34Z-10		2264015	88090738	58	14339											
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67159932	67159932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C16orf70	NM_025187	exon3	c.A218G	p.N73S	CTTTCAATCAGAG	.	30	9	36	0	.	70	G	67159932	A	G	67159932	3	3	118	1	0	0	0	0	1	0	0	0	1829	101	4	2	228	2	C16orf70	16	67159932	Missense_Mutation	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	64895917	67159932	23194821	59	14340											
PSMB10	5699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67968561	67968561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PSMB10	NM_002801	exon8	c.C724T	p.H242Y	CAAAGTGGTAGCG	.	53	22	62	0	.	90	A	67968561	G	A	67968561	3	1	118	1	0	0	0	0	1	0	0	0	12675	1348	47	3	101	3	PSMB10	16	67968561	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	808629	67968561	22386192	60	14341											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	48	27	94	0	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	118	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		7577534	73617676	61	14342											
GPATCH8	23131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42477055	42477055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	GPATCH8	NM_001002909	exon8	c.G2390T	p.R797L	GCTCTTCGCTGGC	.	99	30	113	1	.	94	A	42477055	C	A	42477055	3	1	118	1	0	0	0	0	1	0	0	0	6594	884	31	1	2122	1	GPATCH8	17	42477055	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	34899521	42477055	38718155	62	14343											
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56435197	56435197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RNF43	NM_017763	exon9	c.T1940A	p.L647H	GCAGAGAGGCTGG	.	82	7	89	0	.	92	T	56435197	A	T	56435197	3	4	118	1	0	0	0	0	1	0	0	0	13495	304	11	4	419	4	RNF43	17	56435197	Missense_Mutation	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	13958142	56435197	24760013	63	14344											
C17orf47	284083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56620718	56620718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C17orf47	NM_001038704	exon1	c.T830C	p.V277A	TTAAGGACAGAGA	.	130	50	107	0	.	135	G	56620718	A	G	56620718	3	3	118	1	0	0	0	0	1	0	0	0	1858	275	10	2	890	2	C17orf47	17	56620718	Missense_Mutation	SNP	A	TCGA-ED-A7XP-01A-11D-A34Z-10	185521	56620718	24574492	64	14345											
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78196581	78196581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC26A11	NM_173626	exon4	c.C362T	p.A121V	AGCCCGCCTACGC	.	93	47	86	0	.	90	T	78196581	C	T	78196581	3	4	118	1	0	0	0	0	1	0	0	0	14516	739	26	3	368	3	SLC26A11	17	78196581	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	21575863	78196581	2998629	65	14346											
AMH	268	hgsc.bcm.edu;mdanderson.org	37	19	2249687	2249687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AMH	NM_000479	exon1	c.G356T	p.G119V	GGCTGGGGGCCTG	.	41	16	32	0	.	130	T	2249687	G	T	2249687	3	4	118	1	0	0	0	0	1	0	0	0	572	1232	43	3	358	3	AMH	19	2249687	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10		2249687	56879296	66	14347											
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18284657	18284657	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IFI30	NM_006332	exon1	c.C6T	p.T2T	GATGACCCTGTCG	.	15	4	24	0	.	226	T	18284657	C	T	18284657	2	4	118	1	0	0	0	0	0	0	0	1	7515	610	22	3		3	IFI30	19	18284657	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	16034970	18284657	40844326	67	14348											
LILRA2	11027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55086255	55086255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LILRA2	NM_001130917	exon4	c.G410T	p.G137V	TAGGAGGGAACGT	.	66	18	53	0	.	91	T	55086255	G	T	55086255	3	4	118	1	0	0	0	0	1	0	0	0	8785	1232	43	3	424	3	LILRA2	19	55086255	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10	36801598	55086255	4042728	68	14349											
ZNF329	79673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58639664	58639664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF329	NM_024620	exon4	c.G1207A	p.E403K	CACATTCTTTACA	.	112	17	111	0	.	91	T	58639664	C	T	58639664	3	4	118	1	0	0	0	0	1	0	0	0	17844	922	32	3	422	3	ZNF329	19	58639664	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	3553409	58639664	489319	69	14350											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42195738	42195738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SGK2	NM_016276	exon2	c.G247C	p.G83R	AACCTGGGGCCTT	.	68	20	56	0	.	990	C	42195738	G	C	42195738	3	2	118	1	0	0	0	0	1	0	0	0	14209	1232	43	4	253	4	SGK2	20	42195738	Missense_Mutation	SNP	G	TCGA-ED-A7XP-01A-11D-A34Z-10		42195738	20829782	70	14351											
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	54961384	54961384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AURKA	NM_198437	exon3	c.G248A	p.S83N	GGTACACTGGTTG	.	200	77	227	0	.	1601	T	54961384	C	T	54961384	3	4	118	1	0	0	0	0	1	0	0	0	1221	565	20	3	991	3	AURKA	20	54961384	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	12765646	54961384	8064136	71	14352											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31496267	31496267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DMD	NM_004006	exon59	c.G8893T	p.D2965Y	GGAGATCGCCCAC	.	104	30	111	0	.	265	A	31496267	C	A	31496267	3	1	118	1	0	0	0	0	1	0	0	0	4580	884	31	1	2362	1	DMD	23	31496267	Missense_Mutation	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10		31496267	123774293	72	14353											
PRRG1	5638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	37285115	37285115	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PRRG1	NM_001173490	exon3	c.C33A	p.A11A	AAAAGCCAATTCC	.	354	130	566	1	.	194	A	37285115	C	A	37285115	2	1	118	1	0	0	0	0	0	0	0	1	12605	581	21	3		3	PRRG1	23	37285115	Silent	SNP	C	TCGA-ED-A7XP-01A-11D-A34Z-10	5788848	37285115	117985445	73	14354											
TNN	63923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	175048581	175048581	+	Silent	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	TNN	NM_022093	exon3	c.G522A	p.A174A	CGGGGCGTGCAGC	.	44	18	38	0	.	138	A	175048581	G	A	175048581	2	1	119	1	0	0	0	0	0	0	0	1	16320	1132	40	1		1	TNN	1	175048581	Silent	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		175048581	74202040	1	14355											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54857137	54857137	+	Silent	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SPTBN1	NM_003128	exon15	c.C2778T	p.I926I	GGAAATCAAAGCC	.	25	15	25	0	.	140	T	54857137	C	T	54857137	2	4	119	1	0	0	0	0	0	0	0	1	15118	816	29	3		3	SPTBN1	2	54857137	Silent	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10		54857137	188342236	2	14356											
USP34	9736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61447525	61447525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	USP34	NM_014709	exon67	c.C7967T	p.A2656V	CTGTGTGCCAGTT	.	106	41	126	1	.	579	A	61447525	G	A	61447525	3	1	119	1	0	0	0	0	1	0	0	0	17062	1319	46	3	2729	3	USP34	2	61447525	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	6590388	61447525	181751848	3	14357											
ERCC3	2071	ucsc.edu;bcgsc.ca	37	2	128044460	128044460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ERCC3	NM_000122	exon8	c.C1161A	p.S387R	GATCTGGCTGTCG	.	46	4	67	0	.	723	T	128044460	G	T	128044460	3	4	119	1	0	0	0	0	1	0	0	0	5214	1194	42	3	1219	3	ERCC3	2	128044460	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	66596935	128044460	115154913	4	14358											
DYTN	391475	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207528078	207528078	+	Silent	SNP	T	T	C	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	DYTN	NM_001093730	exon11	c.A1182G	p.Q394Q	CACATTTTGAAAG	.	128	75	185	2	.	23	C	207528078	T	C	207528078	2	2	119	1	0	0	0	0	0	0	0	1	4861	1838	64	2		2	DYTN	2	207528078	Silent	SNP	T	TCGA-ED-A82E-01A-11D-A34Z-10	79483618	207528078	35671295	5	14359											
STXBP5L	9515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120941851	120941851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	STXBP5L	NM_014980	exon11	c.G958A	p.E320K	TGTAGCGAACCAT	.	131	53	141	0	.	77	A	120941851	G	A	120941851	3	1	119	1	0	0	0	0	1	0	0	0	15356	1072	37	1	996	1	STXBP5L	3	120941851	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		120941851	77080579	6	14360											
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	166960379	166960379	+	Silent	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ZBBX	NM_001199201	exon21	c.C2307T	p.S769S	TTGGCTGCTGAAA	.	76	32	86	0	.	92	A	166960379	G	A	166960379	2	1	119	1	0	0	0	0	0	0	0	1	17513	1310	46	3		3	ZBBX	3	166960379	Silent	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	46018528	166960379	31062051	7	14361											
ANKRD32	84250	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	94022380	94022380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ANKRD32	NM_032290	exon16	c.G2078T	p.S693I	TACAGAGCTCTGG	.	166	13	162	1	.	92	T	94022380	G	T	94022380	3	4	119	1	0	0	0	0	1	0	0	0	660	971	34	3	2136	3	ANKRD32	5	94022380	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		94022380	86892880	8	14362											
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	141336991	141336991	+	Silent	SNP	C	C	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PCDH12	NM_016580	exon1	c.G426T	p.L142L	GATTTCCAGCTCC	.	86	46	128	0	.	93	A	141336991	C	A	141336991	2	1	119	1	0	0	0	0	0	0	0	1	11510	581	21	3		3	PCDH12	5	141336991	Silent	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10	47314611	141336991	39578269	9	14363											
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28963999	28963999	+	Silent	SNP	T	T	G	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ZNF311	NM_001010877	exon7	c.A780C	p.S260S	TAGATCTGAGTGC	.	158	48	129	0	.	22	G	28963999	T	G	28963999	2	3	119	1	0	0	0	0	0	0	0	1	17831	1567	55	5		5	ZNF311	6	28963999	Silent	SNP	T	TCGA-ED-A82E-01A-11D-A34Z-10		28963999	142151068	10	14364											
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114269944	114269944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	FOXP2	NM_001172767	exon5	c.C556A	p.Q186K	CAGCAGCAACAAC	.	23	5	36	0	.	295	A	114269944	C	A	114269944	3	1	119	1	0	0	0	0	1	0	0	0	6027	711	25	3	629	3	FOXP2	7	114269944	Missense_Mutation	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10		114269944	44868719	11	14365											
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157931034	157931034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PTPRN2	NM_130843	exon7	c.G1084A	p.E362K	CCTGTTCTCCAGA	.	59	25	67	0	.	295	T	157931034	C	T	157931034	3	4	119	1	0	0	0	0	1	0	0	0	12808	922	32	3	2031	3	PTPRN2	7	157931034	Missense_Mutation	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10	43661090	157931034	1207629	12	14366											
EIF3H	8667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	117668129	117668129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	EIF3H	NM_003756	exon5	c.G673T	p.A225S	TATCTGCAACAGC	.	304	110	329	2	.	658	A	117668129	C	A	117668129	3	1	119	1	0	0	0	0	1	0	0	0	5018	710	25	3	401	3	EIF3H	8	117668129	Missense_Mutation	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10		117668129	28695893	13	14367											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119109470	119109470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PAPPA	NM_002581	exon15	c.C3946T	p.H1316Y	TGCCGTCACCCTG	.	130	53	113	0	.	77	T	119109470	C	T	119109470	3	4	119	1	0	0	0	0	1	0	0	0	11432	826	29	3	4004	3	PAPPA	9	119109470	Missense_Mutation	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10		119109470	22103961	14	14368											
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124936889	124936889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	MORN5	NM_198469	exon4	c.G422A	p.R141H	GGAACCGCTTTCT	.	70	15	76	0	.	90	A	124936889	G	A	124936889	3	1	119	1	0	0	0	0	1	0	0	0	9711	1087	38	1	436	1	MORN5	9	124936889	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	5827419	124936889	16276542	15	14369											
CD81	975	hgsc.bcm.edu;bcgsc.ca	37	11	2416714	2416715	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	CD81	NM_004356	exon5	c.423_424insAA	p.N141fs	CGCCAACAACGCC	.	57	30	82	0	.	650	AA	2416715	-	AA	2416714	7	5	119	1	0	1	1	0	0	0	0	0	3039	477	17	0	441	0	CD81	11	2416714	Frame_Shift_Ins	INS	-	TCGA-ED-A82E-01A-11D-A34Z-10		2416714	132589802	16	14370											
SART1	9092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65743929	65743929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SART1	NM_005146	exon13	c.G1636A	p.E546K	GATCCCGAGCGGA	.	23	13	35	0	.	227	A	65743929	G	A	65743929	3	1	119	1	0	0	0	0	1	0	0	0	13846	1059	37	1	1686	1	SART1	11	65743929	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	63327215	65743929	69262587	17	14371											
OR10G7	390265	broad.mit.edu;mdanderson.org	37	11	123909545	123909545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	OR10G7	NM_001004463	exon1	c.C164T	p.T55I	ATGGGGGTGTGGA	.	350	103	353	1	.	70	A	123909545	G	A	123909545	3	1	119	1	0	0	0	0	1	0	0	0	10902	1261	44	3	775	3	OR10G7	11	123909545	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	58165616	123909545	11096971	18	14372											
ADIPOR2	79602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1893123	1893123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ADIPOR2	NM_024551	exon7	c.G916A	p.A306T	AAGGCCGCCACCA	.	110	67	147	0	.	90	A	1893123	G	A	1893123	3	1	119	1	0	0	0	0	1	0	0	0	319	1087	38	1	938	1	ADIPOR2	12	1893123	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		1893123	131958772	19	14373											
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53928285	53928285	+	Splice_Site	SNP	C	C	G	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ATF7	NM_006856	exon7	c.560+1G>C	.	TACTTACCCCATT	.	111	6	106	0	.	455	G	53928285	C	G	53928285	5	3	119	1	0	0	0	0	0	0	1	0	1086	521	18	4	918	4	ATF7	12	53928285	Splice_Site	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10	52035162	53928285	79923610	20	14374											
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	88329198	88329198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SLITRK5	NM_015567	exon2	c.G1555A	p.A519T	CTGCAGGCCATGC	.	48	33	89	0	.	94	A	88329198	G	A	88329198	3	1	119	1	0	0	0	0	1	0	0	0	14746	1203	42	3	1557	3	SLITRK5	13	88329198	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		88329198	26840680	21	14375											
SPPL2A	84888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51039809	51039809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SPPL2A	NM_032802	exon5	c.T467G	p.I156S	ACAGTAATGTTAT	.	162	94	207	0	.	90	C	51039809	A	C	51039809	3	2	119	1	0	0	0	0	1	0	0	0	15087	101	4	5	1139	5	SPPL2A	15	51039809	Missense_Mutation	SNP	A	TCGA-ED-A82E-01A-11D-A34Z-10		51039809	51491583	22	14376											
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	IDH2,brain,glioma,0	IDH2	NM_002168	exon4	c.G515A	p.R172K	GCGTGCCTGCCAA	.	100	49	151	0	.	15118	T	90631838	C	T	90631838	3	4	119	1	0	0	0	0	1	0	0	0	7495	681	24	3	875	3	IDH2	15	90631838	Missense_Mutation	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10	39592029	90631838	11899554	23	14377											
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	17353089	17353089	+	Silent	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	XYLT1	NM_022166	exon3	c.C669T	p.A223A	GGCTGCGGCTCTG	.	153	69	148	0	.	94	A	17353089	G	A	17353089	2	1	119	1	0	0	0	0	0	0	0	1	17460	1103	39	1		1	XYLT1	16	17353089	Silent	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		17353089	73001664	24	14378											
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15644532	15644532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	TBC1D26	NM_178571	exon10	c.G643A	p.A215T	TTGCTCGCTGGTG	.	22	14	37	0	.	90	A	15644532	G	A	15644532	3	1	119	1	0	0	0	0	1	0	0	0	15613	1087	38	1	673	1	TBC1D26	17	15644532	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		15644532	65550678	25	14379											
SPAG5	10615	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	26906776	26906776	+	Silent	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SPAG5	NM_006461	exon17	c.G2877A	p.Q959Q	TGCGGGCTGAAGG	.	47	18	57	1	.	90	T	26906776	C	T	26906776	2	4	119	1	0	0	0	0	0	0	0	1	14981	796	28	3		3	SPAG5	17	26906776	Silent	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10	11262244	26906776	54288434	26	14380											
MED29	55588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39883132	39883133	+	Frame_Shift_Ins	INS	-	-	GATTCAGAAC	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	MED29	NM_017592	exon2	c.308_309insGATTCAGAAC	p.L103fs	AAAACTTGATTCA	.	50	8	85	0	.	70	GATTCAGAAC	39883133	-	GATTCAGAAC	39883132	7	5	119	1	0	1	1	0	0	0	0	0	9447	1821	63	0	314	0	MED29	19	39883132	Frame_Shift_Ins	INS	-	TCGA-ED-A82E-01A-11D-A34Z-10		39883132	19245851	27	14381											
RCN3	57333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50031779	50031779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	RCN3	NM_020650	exon2	c.G50A	p.G17E	GGCACGGGGCCCA	.	78	28	84	0	.	91	A	50031779	G	A	50031779	3	1	119	1	0	0	0	0	1	0	0	0	13181	1232	43	3	52	3	RCN3	19	50031779	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	10148647	50031779	9097204	28	14382											
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50917028	50917028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	POLD1	NM_002691	exon19	c.G2280T	p.M760I	CGTCATGTGCCGA	.	56	7	51	0	.	840	T	50917028	G	T	50917028	3	4	119	1	0	0	0	0	1	0	0	0	12190	1377	48	3	2350	3	POLD1	19	50917028	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	885249	50917028	8211955	29	14383											
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249927	52249927	+	Silent	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	FPR1	NM_001193306	exon3	c.C321A	p.I107I	CAAGTTGATGTCC	.	102	40	75	0	.	524	T	52249927	G	T	52249927	2	4	119	1	0	0	0	0	0	0	0	1	6038	1280	45	3		3	FPR1	19	52249927	Silent	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10	1332899	52249927	6879056	30	14384											
ADRM1	11047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60882773	60882773	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ADRM1	NM_175573	exon7	c.G745C	p.G249R	AGTTCCGGGAATG	.	69	27	51	0	.	90	C	60882773	G	C	60882773	3	2	119	1	0	0	0	0	1	0	0	0	345	1116	39	4	767	4	ADRM1	20	60882773	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		60882773	2142747	31	14385											
ITGB2	3689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46309959	46309959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ITGB2	NM_000211	exon12	c.G1591A	p.G531R	ACTGCCCGTATAT	.	82	38	99	0	.	717	T	46309959	C	T	46309959	3	4	119	1	0	0	0	0	1	0	0	0	7894	652	23	1	738	1	ITGB2	21	46309959	Missense_Mutation	SNP	C	TCGA-ED-A82E-01A-11D-A34Z-10		46309959	1819936	32	14386											
PMM1	5372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41980580	41980580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PMM1	NM_002676	exon3	c.C233T	p.A78V	TTCTCGGCAAACA	.	35	4	58	0	.	91	A	41980580	G	A	41980580	3	1	119	1	0	0	0	0	1	0	0	0	12136	1203	42	3	579	3	PMM1	22	41980580	Missense_Mutation	SNP	G	TCGA-ED-A82E-01A-11D-A34Z-10		41980580	9323986	33	14387											
PEX10	5192	ucsc.edu;bcgsc.ca	37	1	2337963	2337963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PEX10	NM_153818	exon5	c.T932C	p.L311P	CAGAACAGGTGGC	.	56	5	30	0	.	90	G	2337963	A	G	2337963	3	3	120	1	0	0	0	0	1	0	0	0	11736	188	7	2	116	2	PEX10	1	2337963	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10		2337963	246912658	1	14388											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380291	114380291	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PTPN22	NM_015967	exon13	c.T1731C	p.Y577Y	ATTGTAATAAGAG	.	162	60	63	0	.	227	G	114380291	A	G	114380291	2	3	120	1	0	0	0	0	0	0	0	1	12787	108	4	2		2	PTPN22	1	114380291	Silent	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	112042328	114380291	134870330	2	14389											
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115524051	115524051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYCP1	NM_003176	exon29	c.C2477T	p.S826L	TCACATCAGTTGA	.	215	96	74	0	.	91	T	115524051	C	T	115524051	3	4	120	1	0	0	0	0	1	0	0	0	15428	838	29	3	2587	3	SYCP1	1	115524051	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	1143760	115524051	133726570	3	14390											
NBPF14	25832	ucsc.edu;bcgsc.ca	37	1	148004749	148004749	+	Silent	SNP	C	C	T	rs77143638	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.G2565A	p.L855L	GTCCTGCAAGACT	.	134	45	31	0	C|0.986;T|0.014	91	T	148004749	C	T	148004749	2	4	120	1	0	0	0	0	0	0	0	1	10194	709	25	3		3	NBPF14	1	148004749	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	32480698	148004749	101245872	4	14391											
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154960711	154960711	+	Missense_Mutation	SNP	A	A	C	rs150372864	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLAD1	NM_025207	exon2	c.A503C	p.N168T	TCTCCAACCGCTT	.	257	73	81	0	A|1.000;G|0.000;T|0.000	93	C	154960711	A	C	154960711	3	2	120	1	0	0	0	0	1	0	0	0	5920	43	2	5	584	5	FLAD1	1	154960711	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	6955962	154960711	94289910	5	14392											
FCGR3B	2215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161596059	161596059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FCGR3B	NM_001244753	exon4	c.T561G	p.F187L	ATGATGAAAATAC	.	199	160	100	0	.	22	C	161596059	A	C	161596059	3	2	120	1	0	0	0	0	1	0	0	0	5785	243	9	5	256	5	FCGR3B	1	161596059	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	6635348	161596059	87654562	6	14393											
GPR137B	7107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236368456	236368456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GPR137B	NM_003272	exon6	c.T997A	p.F333I	CATGGATTCAGTC	.	151	56	47	0	.	90	A	236368456	T	A	236368456	3	1	120	1	0	0	0	0	1	0	0	0	6646	1493	52	4	1019	4	GPR137B	1	236368456	Missense_Mutation	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	74772397	236368456	12882165	7	14394											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237774079	237774079	+	Silent	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RYR2	NM_001035	exon36	c.G4701T	p.S1567S	TCTCTCGGCGGGA	.	181	52	67	0	.	158	T	237774079	G	T	237774079	2	4	120	1	0	0	0	0	0	0	0	1	13769	1103	39	1		1	RYR2	1	237774079	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	1405623	237774079	11476542	8	14395											
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248263611	248263611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2L13	NM_175911	exon3	c.G934T	p.E312X	CTGAAAGAATAAT	.	110	27	32	0	.	70	T	248263611	G	T	248263611	4	4	120	1	0	0	0	0	0	1	0	0	11006	943	33	3	936	3	OR2L13	1	248263611	Nonsense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	10489532	248263611	987010	9	14396											
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.V137L	CTTCTACGTGACA	.	1506	348	144	1	.	.	TC	248525291	CG	TC	248525290	3	4	120	1	0	0	0	0	1	0	0	0	11027	547	19	1	410	1	OR2T4	1	248525290	Missense_Mutation	DNP	CG	TCGA-EP-A12J-01A-11D-A12Z-10	261679	248525290	725331	10	14397											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21231993	21231994	+	Frame_Shift_Ins	INS	-	-	CTCTACC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	APOB	NM_000384	exon26	c.7747_7748insGGTAGAG	p.Q2583fs	ACCCTTGCTCTAC	.	146	35	59	0	.	175	CTCTACC	21231994	-	CTCTACC	21231993	7	5	120	1	0	1	1	0	0	0	0	0	785	1328	46	0	5960	0	APOB	2	21231993	Frame_Shift_Ins	INS	-	TCGA-EP-A12J-01A-11D-A12Z-10		21231993	221967380	11	14398											
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71047619	71047619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLEC4F	NM_173535	exon1	c.C37A	p.Q13K	CACACTGGTTATC	.	100	49	54	0	.	95	T	71047619	G	T	71047619	3	4	120	1	0	0	0	0	1	0	0	0	3516	1357	47	3	1760	3	CLEC4F	2	71047619	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	49815626	71047619	172151754	12	14399											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85043137	85043137	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DNAH6	NM_001370	exon76	c.G12303A	p.K4101K	CTATAAGCCAAGC	.	228	85	75	0	.	69	A	85043137	G	A	85043137	2	1	120	1	0	0	0	0	0	0	0	1	4605	962	34	3		3	DNAH6	2	85043137	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	13995518	85043137	158156236	13	14400											
SLC4A10	57282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162627522	162627522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC4A10	NM_001178016	exon3	c.C121T	p.R41C	GGAACTCGTTCTA	.	137	55	58	1	.	229	T	162627522	C	T	162627522	3	4	120	1	0	0	0	0	1	0	0	0	14651	884	31	1	179	1	SLC4A10	2	162627522	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	77584385	162627522	80571851	14	14401											
SLC25A12	8604	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172693690	172693690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC25A12	NM_003705	exon6	c.A553G	p.I185V	CCATGATGTCACT	.	479	198	127	1	.	90	C	172693690	T	C	172693690	3	2	120	1	0	0	0	0	1	0	0	0	14474	1464	51	2	1535	2	SLC25A12	2	172693690	Missense_Mutation	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	10066168	172693690	70505683	15	14402											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219222268	219222286	+	Frame_Shift_Del	DEL	CTACAGATGCTGTTCTTCT	CTACAGATGCTGTTCTTCT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CTACAGATGCTGTTCTTCT	CTACAGATGCTGTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C2orf62	NM_198559	exon3	c.130_148del	p.44_50del	GAGGAGCTACAGA	.	41	16	37	0	.	68	-	219222286	CTACAGATGCTGTTCTTCT	-	219222268	7	5	120	1	0	1	0	1	0	0	0	0	2181	796	28	0	140	0	C2orf62	2	219222268	Frame_Shift_Del	DEL	CTACAGATGCTGTTCTTCT	TCGA-EP-A12J-01A-11D-A12Z-10	46528578	219222268	23977105	16	14403											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	440785	440785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CHL1	NM_006614	exon26	c.A3339T	p.L1113F	ACTATTATTAACT	.	456	196	120	0	.	583	T	440785	A	T	440785	3	4	120	1	0	0	0	0	1	0	0	0	3349	446	16	4	3433	4	CHL1	3	440785	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10		440785	197581645	17	14404											
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97G	p.S33A	CTGGACTCTGGAA	.	239	105	89	0	.	24361	G	41266100	T	G	41266100	3	3	120	1	0	0	0	0	1	0	0	0	4016	1551	54	5	103	5	CTNNB1	3	41266100	Missense_Mutation	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	40825315	41266100	156756330	18	14405											
ARHGAP31	57514	broad.mit.edu;bcgsc.ca	37	3	119101978	119101978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ARHGAP31	NM_020754	exon6	c.T587C	p.L196P	CCTTCCTTGCAGT	.	156	10	71	0	.	92	C	119101978	T	C	119101978	3	2	120	1	0	0	0	0	1	0	0	0	880	1609	56	2	609	2	ARHGAP31	3	119101978	Missense_Mutation	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	77835878	119101978	78920452	19	14406											
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126733602	126733602	+	Silent	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PLXNA1	NM_032242	exon13	c.C2805A	p.A935A	TGACGCCCTGGTG	.	87	37	31	0	.	93	A	126733602	C	A	126733602	2	1	120	1	0	0	0	0	0	0	0	1	12119	610	22	3		3	PLXNA1	3	126733602	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	7631624	126733602	71288828	20	14407											
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172098773	172098773	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FNDC3B	NM_001135095	exon25	c.T3193C	p.L1065L	ACACAGTTAGAAG	.	101	31	51	0	.	155	C	172098773	T	C	172098773	2	2	120	1	0	0	0	0	0	0	0	1	5970	1722	60	2		2	FNDC3B	3	172098773	Silent	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	45365171	172098773	25923657	21	14408											
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195507026	195507026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.C11425A	p.L3809I	CAGGAAGAGGGGT	.	168	27	75	1	.	90	T	195507026	G	T	195507026	3	4	120	1	0	0	0	0	1	0	0	0	9978	942	33	3		3	MUC4	3	195507026	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	23408253	195507026	2515404	22	14409											
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39310299	39310299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFC1	NM_002913	exon13	c.G1842T	p.W614C	TCGGAGCCAGCGT	.	563	248	141	0	.	230	A	39310299	C	A	39310299	3	1	120	1	0	0	0	0	1	0	0	0	13244	740	26	3	1653	3	RFC1	4	39310299	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		39310299	151843977	23	14410											
DSPP	1834	hgsc.bcm.edu;broad.mit.edu	37	4	88536644	88536652	+	In_Frame_Del	DEL	AGCAGTGAT	AGCAGTGAT	-	rs200486992		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	AGCAGTGAT	AGCAGTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.2830_2838del	p.944_946del	AGTGACAGCAGTG	.	353	25	81	0	.	90	-	88536652	AGCAGTGAT	-	88536644	7	5	120	1	0	1	0	1	0	0	0	0	4782	188	7	0	2844	0	DSPP	4	88536644	In_Frame_Del	DEL	AGCAGTGAT	TCGA-EP-A12J-01A-11D-A12Z-10	49226345	88536644	102617632	24	14411											
EDNRA	1909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148457097	148457097	+	Silent	SNP	G	G	A	rs200693894		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EDNRA	NM_001957	exon5	c.G816A	p.A272A	CACTGCGATCTTC	.	297	127	109	0	.	586	A	148457097	G	A	148457097	2	1	120	1	0	0	0	0	0	0	0	1	4919	1045	37	1		1	EDNRA	4	148457097	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	59920453	148457097	42697179	25	14412											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72168474	72168474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	TNPO1,NS,carcinoma,+1	TNPO1	NM_002270	exon7	c.C605T	p.A202V	CTCACGCTGTTGC	.	223	100	96	0	.	228	T	72168474	C	T	72168474	3	4	120	1	0	0	0	0	1	0	0	0	16332	797	28	3	631	3	TNPO1	5	72168474	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		72168474	108746786	26	14413											
TTC37	9652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94839530	94839530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TTC37	NM_014639	exon31	c.G3205A	p.E1069K	TGCTCTCTTTATA	.	154	63	86	0	.	94	T	94839530	C	T	94839530	3	4	120	1	0	0	0	0	1	0	0	0	16702	922	32	3	1541	3	TTC37	5	94839530	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	22671056	94839530	86075730	27	14414											
CDO1	1036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115146946	115146946	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDO1	NM_001801	exon3	c.A315G	p.T105T	AAATAATGTCTCC	.	302	120	106	0	.	154	C	115146946	T	C	115146946	2	2	120	1	0	0	0	0	0	0	0	1	3169	1451	51	2		2	CDO1	5	115146946	Silent	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	20307416	115146946	65768314	28	14415											
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182753	140182753	+	Silent	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCDHA3	NM_031497	exon1	c.C1971G	p.P657P	TGAACCCTCATTG	.	106	48	50	0	.	98	G	140182753	C	G	140182753	2	3	120	1	0	0	0	0	0	0	0	1	11525	668	24	4		4	PCDHA3	5	140182753	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	25035807	140182753	40732507	29	14416											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169685155	169685155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCP2	NM_005565	exon16	c.T986C	p.L329S	TGGGGCAAAGGTC	.	154	63	75	0	.	23	G	169685155	A	G	169685155	3	3	120	1	0	0	0	0	1	0	0	0	8692	131	5	2	639	2	LCP2	5	169685155	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	29502402	169685155	11230105	30	14417											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33657110	33657110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ITPR3	NM_002224	exon50	c.C6790A	p.L2264I	CGCCCCCTCATCG	.	75	32	57	0	.	1085	A	33657110	C	A	33657110	3	1	120	1	0	0	0	0	1	0	0	0	7922	681	24	3	6988	3	ITPR3	6	33657110	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		33657110	137457957	31	14418											
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607278	46607278	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP39A1	NM_016593	exon3	c.G441A	p.L147L	ATTCTCCAGTTGT	.	336	138	108	0	.	91	T	46607278	C	T	46607278	2	4	120	1	0	0	0	0	0	0	0	1	4177	581	21	3		3	CYP39A1	6	46607278	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	12950168	46607278	124507789	32	14419											
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40085553	40085553	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDK13	NM_003718	exon6	c.T2472C	p.G824G	GGAGGGTCTGGAT	.	154	74	60	0	.	548	C	40085553	T	C	40085553	2	2	120	1	0	0	0	0	0	0	0	1	3129	1654	58	2		2	CDK13	7	40085553	Silent	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10		40085553	119053110	33	14420											
SPDYE1	285955	broad.mit.edu;bcgsc.ca	37	7	44047000	44047000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SPDYE1	NM_175064	exon5	c.C766T	p.P256S	ATGAACCCGAGGG	.	380	17	133	1	.	91	T	44047000	C	T	44047000	3	4	120	1	0	0	0	0	1	0	0	0	15028	623	22	3	784	3	SPDYE1	7	44047000	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	3961447	44047000	115091663	34	14421											
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	77569480	77569480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PHTF2	NM_001127357	exon12	c.C1499A	p.S500X	CTGCTTCAGAACT	.	495	183	126	0	.	23	A	77569480	C	A	77569480	4	1	120	1	0	0	0	0	0	1	0	0	11863	838	29	3	1599	3	PHTF2	7	77569480	Nonsense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	33522480	77569480	81569183	35	14422											
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98655111	98655111	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SMURF1	NM_020429	exon4	c.267delA	p.K89fs	TCCCTGTTTCTTG	.	251	89	94	0	.	661	-	98655111	T	-	98655111	7	5	120	1	0	1	0	1	0	0	0	0	14819	1722	60	0	2070	0	SMURF1	7	98655111	Frame_Shift_Del	DEL	T	TCGA-EP-A12J-01A-11D-A12Z-10	21085631	98655111	60483552	36	14423											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	107824934	107824934	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NRCAM	NM_001037132	exon18	c.C2160T	p.R720R	CATCACGCGGAAG	.	106	39	42	0	.	156	A	107824934	G	A	107824934	2	1	120	1	0	0	0	0	0	0	0	1	10644	1074	38	1		1	NRCAM	7	107824934	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	9169823	107824934	51313729	37	14424											
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123508467	123508467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HYAL4	NM_012269	exon3	c.C140A	p.P47H	GGAAACCTTTTAT	.	162	70	60	0	.	91	A	123508467	C	A	123508467	3	1	120	1	0	0	0	0	1	0	0	0	7466	681	24	3	142	3	HYAL4	7	123508467	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	15683533	123508467	35630196	38	14425											
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	128140983	128140984	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	METTL2B	NM_018396	exon8	c.943_944insT	p.V315fs	TTCTATGTGAGAG	.	254	41	79	0	.	23	T	128140984	-	T	128140983	7	5	120	1	0	1	1	0	0	0	0	0	9500	1377	48	0	973	0	METTL2B	7	128140983	Frame_Shift_Ins	INS	-	TCGA-EP-A12J-01A-11D-A12Z-10	4632516	128140983	30997680	39	14426											
MLL3	58508	broad.mit.edu;bcgsc.ca	37	7	151962169	151962169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLL3	NM_170606	exon8	c.C1138T	p.R380C	CTGCACGTTTTAA	.	367	16	134	0	.	1398	A	151962169	G	A	151962169	3	1	120	1	0	0	0	0	1	0	0	0	9622	1145	40	1	13805	1	MLL3	7	151962169	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	23821186	151962169	7176494	40	14427											
AQP7	364	ucsc.edu;bcgsc.ca	37	9	33386144	33386144	+	Silent	SNP	G	G	A	rs76209395	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AQP7	NM_001170	exon6	c.C456T	p.V152V	TGTAGCGACGGGA	.	201	38	76	2	G|0.375;A|0.625	90	A	33386144	G	A	33386144	2	1	120	1	0	0	0	0	0	0	0	1	831	1045	37	1		1	AQP7	9	33386144	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10		33386144	107827287	41	14428											
EXD3	54932	broad.mit.edu;mdanderson.org	37	9	140201464	140201464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EXD3	NM_017820	exon22	c.G2569T	p.E857X	CGCTCTCCAGCAT	.	34	10	33	0	.	90	A	140201464	C	A	140201464	4	1	120	1	0	0	0	0	0	1	0	0	5299	864	30	3	65	3	EXD3	9	140201464	Nonsense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	106815320	140201464	1011967	42	14429											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85960359	85960359	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDHR1	NM_001171971	exon6	c.C441T	p.D147D	TCAGGACATACCT	.	123	62	76	0	.	91	T	85960359	C	T	85960359	2	4	120	1	0	0	0	0	0	0	0	1	3118	477	17	3		3	CDHR1	10	85960359	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		85960359	49574388	43	14430											
CUTC	51076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101503802	101503802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CUTC	NM_015960	exon5	c.C412T	p.R138C	ATTTGCCGCCCTC	.	174	85	62	0	.	153	T	101503802	C	T	101503802	3	4	120	1	0	0	0	0	1	0	0	0	4063	652	23	1	430	1	CUTC	10	101503802	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	15543443	101503802	34030945	44	14431											
MUC6	4588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1016213	1016213	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.T6588C	p.P2196P	AAAAAGAGGAGAT	.	219	84	86	1	.	23	G	1016213	A	G	1016213	2	3	120	1	0	0	0	0	0	0	0	1	9980	291	11	2		2	MUC6	11	1016213	Silent	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10		1016213	133990303	45	14432											
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761412	55761412	+	Silent	SNP	C	C	T	rs144082157	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR5F1	NM_003697	exon1	c.G690A	p.S230S	CTCCCCCGAATGC	.	127	52	31	0	C|0.999;T|0.001	70	T	55761412	C	T	55761412	2	4	120	1	0	0	0	0	0	0	0	1	11158	639	23	1		1	OR5F1	11	55761412	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	54745199	55761412	79245104	46	14433											
EFEMP2	30008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65638628	65638628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EFEMP2	NM_016938	exon4	c.G367T	p.D123Y	ACTCACCCACACA	.	58	20	23	0	.	91	A	65638628	C	A	65638628	3	1	120	1	0	0	0	0	1	0	0	0	4942	637	22	3	996	3	EFEMP2	11	65638628	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	9877216	65638628	69367888	47	14434											
CADM1	23705	hgsc.bcm.edu;broad.mit.edu	37	11	115047284	115047285	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CADM1	NM_014333	exon10	c.1239_1240insG	p.G413fs	ATCGGCTCCTTTG	.	547	37	141	0	.	92	C	115047285	-	C	115047284	7	5	120	1	0	1	1	0	0	0	0	0	2566	1538	54	0	93	0	CADM1	11	115047284	Frame_Shift_Ins	INS	-	TCGA-EP-A12J-01A-11D-A12Z-10	49408656	115047284	19959232	48	14435											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83358835	83358835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMTC2	NM_152588	exon5	c.C1631G	p.A544G	GGTTTGCAGAAGC	.	498	193	131	0	.	92	G	83358835	C	G	83358835	3	3	120	1	0	0	0	0	1	0	0	0	16258	710	25	4	1649	4	TMTC2	12	83358835	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		83358835	50493060	49	14436											
GALNT4	8693	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	89916794	89916794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_003774	exon1	c.T1533G	p.N511K	CACATAATTTTTT	.	169	83	59	0	.	.	C	89916794	A	C	89916794	3	2	120	1	0	0	0	0	1	0	0	0	6215	98	4	5	207	5	GALNT4	12	89916794	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	6557959	89916794	43935101	50	14437											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	117768410	117768410	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NOS1	NM_000620	exon2	c.C465T	p.P155P	ATTCCCGGGACCC	.	55	22	25	0	.	154	A	117768410	G	A	117768410	2	1	120	1	0	0	0	0	0	0	0	1	10541	1103	39	1		1	NOS1	12	117768410	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	27851616	117768410	16083485	51	14438											
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125453127	125453127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DHX37	NM_032656	exon10	c.G1361T	p.G454V	CACTCGCCACTGT	.	32	16	19	0	.	227	A	125453127	C	A	125453127	3	1	120	1	0	0	0	0	1	0	0	0	4510	739	26	3	2184	3	DHX37	12	125453127	Missense_Mutation	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	7684717	125453127	8398768	52	14439											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15808930	15808930	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MYH11	NM_001040114	exon41	c.5643delA	p.K1881fs	ATTGCCTTTCTCT	.	93	39	50	0	.	666	-	15808930	T	-	15808930	7	5	120	1	0	1	0	1	0	0	0	0	10031	1606	56	0	339	0	MYH11	16	15808930	Frame_Shift_Del	DEL	T	TCGA-EP-A12J-01A-11D-A12Z-10		15808930	74545823	53	14440											
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88776355	88776355	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CTU2	NM_001012759	exon3	c.C153T	p.F51F	CTGTTTCAAGGCC	.	102	44	62	0	.	23	T	88776355	C	T	88776355	2	4	120	1	0	0	0	0	0	0	0	1	4048	825	29	3		3	CTU2	16	88776355	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	72967425	88776355	1578398	54	14441											
OR1E1	8387	broad.mit.edu;ucsc.edu	37	17	3300970	3300970	+	Silent	SNP	C	C	G	rs61735439	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR1E1	NM_003553	exon1	c.G735C	p.L245L	CACAGACAGGTGG	.	166	59	57	0	C|0.987;G|0.013	68	G	3300970	C	G	3300970	2	3	120	1	0	0	0	0	0	0	0	1	10954	465	17	4		4	OR1E1	17	3300970	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		3300970	77894240	55	14442											
DLG4	1742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7097812	7097812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DLG4	NM_001365	exon14	c.C1433T	p.A478V	AACAGGGCCCTGG	.	45	30	35	0	.	24	A	7097812	G	A	7097812	3	1	120	1	0	0	0	0	1	0	0	0	4557	1203	42	3	906	3	DLG4	17	7097812	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	3796842	7097812	74097398	56	14443											
KIF19	124602	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	72344027	72344027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KIF19	NM_153209	exon9	c.A1036G	p.I346V	AAGAACATTAAGA	.	17	11	12	0	.	90	G	72344027	A	G	72344027	3	3	120	1	0	0	0	0	1	0	0	0	8282	217	8	2	1070	2	KIF19	17	72344027	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	65246215	72344027	8851183	57	14444											
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	80115731	80115731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC57	NM_198082	exon14	c.C2134T	p.Q712X	CCACCTGCTTCCG	.	49	28	25	0	.	24	A	80115731	G	A	80115731	4	1	120	1	0	0	0	0	0	1	0	0	2827	1328	46	3	629	3	CCDC57	17	80115731	Nonsense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	7771704	80115731	1079479	58	14445											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10471887	10471887	+	Silent	SNP	C	C	T	rs145453912	byfrequency;alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	APCDD1	NM_153000	exon3	c.C603T	p.A201A	CAAGGCCGTGAAC	.	69	26	30	0	C|1.000;G|0.000	90	T	10471887	C	T	10471887	2	4	120	1	0	0	0	0	0	0	0	1	765	639	23	1		1	APCDD1	18	10471887	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		10471887	67605361	59	14446											
MLLT1	4298	ucsc.edu;bcgsc.ca	37	19	6270619	6270619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLLT1	NM_005934	exon2	c.T164C	p.L55P	TCGTGCAGCCAGA	.	51	4	36	0	.	658	G	6270619	A	G	6270619	3	3	120	1	0	0	0	0	1	0	0	0	9625	188	7	2	1559	2	MLLT1	19	6270619	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10		6270619	52858364	60	14447											
PRAM1	84106	broad.mit.edu;bcgsc.ca	37	19	8563661	8563661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_032152	exon2	c.A1031G	p.K344R	AGCAGCTTCCTGG	.	84	6	66	0	.	.	C	8563661	T	C	8563661	3	2	120	1	0	0	0	0	1	0	0	0	12423	1609	56	2	1014	2	PRAM1	19	8563661	Missense_Mutation	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10	2293042	8563661	50565322	61	14448											
CYP4F3	4051	broad.mit.edu;ucsc.edu	37	19	15760906	15760906	+	Silent	SNP	C	C	T	rs61739996		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP4F3	NM_001199209	exon7	c.C831T	p.T277T	CCGCACCCTCCCT	.	100	39	31	0	C|0.014;T|0.986	93	T	15760906	C	T	15760906	2	4	120	1	0	0	0	0	0	0	0	1	4190	610	22	3		3	CYP4F3	19	15760906	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	7197245	15760906	43368077	62	14449											
KIAA0355	9710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34791740	34791740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KIAA0355	NM_014686	exon2	c.A362C	p.Q121P	ATGTGCAGGAGCA	.	64	21	33	0	.	91	C	34791740	A	C	34791740	3	2	120	1	0	0	0	0	1	0	0	0	8170	188	7	5	364	5	KIAA0355	19	34791740	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	19030834	34791740	24337243	63	14450											
ZNF527	84503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37879212	37879212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF527	NM_032453	exon5	c.G261T	p.W87C	AGACTGGGAGTCT	.	240	92	88	0	.	70	T	37879212	G	T	37879212	3	4	120	1	0	0	0	0	1	0	0	0	17965	1241	43	3	275	3	ZNF527	19	37879212	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	3087472	37879212	21249771	64	14451											
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39328060	39328060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HNRNPL	NM_001533	exon12	c.C1675G	p.L559V	AGCCCAGAGTCTC	.	172	68	69	0	.	22	C	39328060	G	C	39328060	3	2	120	1	0	0	0	0	1	0	0	0	7270	933	33	4	102	4	HNRNPL	19	39328060	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	1448848	39328060	19800923	65	14452											
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54313461	54313461	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NLRP12	NM_144687	exon3	c.C1452T	p.D484D	TAGGCCGTGCTTC	.	120	47	60	1	.	211	A	54313461	G	A	54313461	2	1	120	1	0	0	0	0	0	0	0	1	10474	1136	40	1		1	NLRP12	19	54313461	Silent	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	14985401	54313461	4815522	66	14453											
OSCAR	126014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54602893	54602893	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OSCAR	NM_130771	exon4	c.71-1G>T	.	TGGCCACTAAGGG	.	117	50	44	0	.	68	A	54602893	C	A	54602893	5	1	120	1	0	0	0	0	0	0	1	0	11285	579	20	3	943	3	OSCAR	19	54602893	Splice_Site	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10	289432	54602893	4526090	67	14454											
COX4I2	84701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	30227827	30227827	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	COX4I2	NM_032609	exon3	c.C174T	p.N58N	ACTCAACGCTGAG	.	22	11	15	0	.	227	T	30227827	C	T	30227827	2	4	120	1	0	0	0	0	0	0	0	1	3770	535	19	1		1	COX4I2	20	30227827	Silent	SNP	C	TCGA-EP-A12J-01A-11D-A12Z-10		30227827	32797693	68	14455											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33598060	33598060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRPC4AP	NM_015638	exon12	c.C1441G	p.L481V	CATTCAGCTCCTG	.	277	107	106	0	.	91	C	33598060	G	C	33598060	3	2	120	1	0	0	0	0	1	0	0	0	16578	962	34	4	984	4	TRPC4AP	20	33598060	Missense_Mutation	SNP	G	TCGA-EP-A12J-01A-11D-A12Z-10	3370233	33598060	29427460	69	14456											
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40800132	40800132	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCA5L	NM_152505	exon4	c.A288G	p.K96K	ATACTTTTTCTTC	.	303	123	109	0	.	22	C	40800132	T	C	40800132	2	2	120	1	0	0	0	0	0	0	0	1	8657	1838	64	2		2	LCA5L	21	40800132	Silent	SNP	T	TCGA-EP-A12J-01A-11D-A12Z-10		40800132	7329763	70	14457											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47773060	47773060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCNT	NM_006031	exon10	c.A1499G	p.D500G	TGGAAGATTTAGA	.	92	25	56	0	.	141	G	47773060	A	G	47773060	3	3	120	1	0	0	0	0	1	0	0	0	11590	333	12	2	1537	2	PCNT	21	47773060	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10	6972928	47773060	356835	71	14458											
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152225435	152225435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PNMA3	NM_013364	exon2	c.A23G	p.D8G	TACAGGACTGGTG	.	117	104	40	0	.	600	G	152225435	A	G	152225435	3	3	120	1	0	0	0	0	1	0	0	0	12155	275	10	2	25	2	PNMA3	23	152225435	Missense_Mutation	SNP	A	TCGA-EP-A12J-01A-11D-A12Z-10		152225435	3045125	72	14459											
PADI4	23569	ucsc.edu;bcgsc.ca	37	1	17674442	17674442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PADI4	NM_012387	exon10	c.A1054G	p.M352V	GATGAAATGGAGA	.	31	4	29	0	.	70	G	17674442	A	G	17674442	3	3	121	1	0	0	0	0	1	0	0	0	11380	101	4	2	1092	2	PADI4	1	17674442	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10		17674442	231576179	1	14460											
DNALI1	7802	ucsc.edu;bcgsc.ca	37	1	38024944	38024944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNALI1	NM_003462	exon3	c.A310G	p.T104A	GAAGACACGCAGC	.	26	5	29	0	.	154	G	38024944	A	G	38024944	3	3	121	1	0	0	0	0	1	0	0	0	4659	159	6	2	320	2	DNALI1	1	38024944	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	20350502	38024944	211225677	2	14461											
MACF1	23499	ucsc.edu;bcgsc.ca	37	1	39818706	39818706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MACF1	NM_012090	exon40	c.A5041G	p.N1681D	GCAGAGAACAAGA	.	46	4	47	0	.	165	G	39818706	A	G	39818706	3	3	121	1	0	0	0	0	1	0	0	0	9144	246	9	2	11346	2	MACF1	1	39818706	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	1793762	39818706	209431915	3	14462											
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576688	158576688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR10Z1	NM_001004478	exon1	c.C460T	p.L154F	GGATACCTCTTTG	.	171	44	135	0	.	70	T	158576688	C	T	158576688	3	4	121	1	0	0	0	0	1	0	0	0	10923	681	24	3	462	3	OR10Z1	1	158576688	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	118757982	158576688	90673933	4	14463											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158605719	158605719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTA1	NM_003126	exon38	c.G5416C	p.E1806Q	CCAACTCTTTGAG	.	72	55	48	0	.	142	G	158605719	C	G	158605719	3	3	121	1	0	0	0	0	1	0	0	0	15115	922	32	4	1903	4	SPTA1	1	158605719	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	29031	158605719	90644902	5	14464											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158670099	158670099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR6K2	NM_001005279	exon1	c.C344G	p.T115R	ATAACTGTCAAGA	.	103	56	90	0	.	69	C	158670099	G	C	158670099	3	2	121	1	0	0	0	0	1	0	0	0	11202	1377	48	4	634	4	OR6K2	1	158670099	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	64380	158670099	90580522	6	14465											
CASQ1	844	ucsc.edu;bcgsc.ca	37	1	160165795	160165795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CASQ1	NM_001231	exon6	c.A760G	p.N254D	ATTGTCAACTTCG	.	45	5	57	0	.	90	G	160165795	A	G	160165795	3	3	121	1	0	0	0	0	1	0	0	0	2680	130	5	2	782	2	CASQ1	1	160165795	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	1495696	160165795	89084826	7	14466											
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167971772	167971772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCAF6	NM_001198956	exon8	c.C956T	p.T319I	CAGATACTGGACC	.	237	64	234	0	.	516	T	167971772	C	T	167971772	3	4	121	1	0	0	0	0	1	0	0	0	4274	565	20	3	986	3	DCAF6	1	167971772	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	7805977	167971772	81278849	8	14467											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186097385	186097385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMCN1	NM_031935	exon83	c.C12866T	p.P4289L	CATTGCCCAAATT	.	57	23	37	0	.	113	T	186097385	C	T	186097385	3	4	121	1	0	0	0	0	1	0	0	0	7220	623	22	3	13196	3	HMCN1	1	186097385	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	18125613	186097385	63153236	9	14468											
MAPKAPK2	9261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	206902164	206902166	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAPKAPK2	NM_004759	exon2	c.389_391del	p.130_131del	ACGCAGGGAGGAA	.	62	15	74	0	.	1214	-	206902166	GGA	-	206902164	7	5	121	1	0	1	0	1	0	0	0	0	9289	1232	43	0	395	0	MAPKAPK2	1	206902164	In_Frame_Del	DEL	GGA	TCGA-EP-A26S-01A-11D-A16V-10	20804779	206902164	42348457	10	14469											
OR2T27	403239	broad.mit.edu;mdanderson.org	37	1	248814007	248814007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR2T27	NM_001001824	exon1	c.A179T	p.Y60F	AGGAAGTACATGG	.	212	25	181	0	.	47	A	248814007	T	A	248814007	3	1	121	1	0	0	0	0	1	0	0	0	11021	1638	57	4	777	4	OR2T27	1	248814007	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	41911843	248814007	436614	11	14470											
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27688641	27688641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IFT172	NM_015662	exon17	c.A1801C	p.T601P	TGGCTGTTCCAAA	.	67	33	75	0	.	154	G	27688641	T	G	27688641	3	3	121	1	0	0	0	0	1	0	0	0	7557	1725	60	5	3576	5	IFT172	2	27688641	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		27688641	215510732	12	14471											
ABCG8	64241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44099245	44099245	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCG8	NM_022437	exon7	c.G1095T	p.T365T	AGAGACGAAGGAT	.	75	31	61	0	.	94	T	44099245	G	T	44099245	2	4	121	1	0	0	0	0	0	0	0	1	72	1045	37	1		1	ABCG8	2	44099245	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	16410604	44099245	199100128	13	14472											
FER1L5	90342	broad.mit.edu;mdanderson.org	37	2	97359397	97359397	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FER1L5	NM_001113382	exon31	c.G3528A	p.V1176V	TGTGGTGCTGGAG	.	25	12	18	0	.	23	A	97359397	G	A	97359397	2	1	121	1	0	0	0	0	0	0	0	1	5814	1306	46	3		3	FER1L5	2	97359397	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	53260152	97359397	145839976	14	14473											
EPB41L5	57669	ucsc.edu;bcgsc.ca	37	2	120834553	120834553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EPB41L5	NM_020909	exon8	c.T512C	p.L171P	CTGAACTTGGTGA	.	39	4	48	0	.	91	C	120834553	T	C	120834553	3	2	121	1	0	0	0	0	1	0	0	0	5157	1609	56	2	538	2	EPB41L5	2	120834553	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	23475156	120834553	122364820	15	14474											
ARHGEF4	50649	ucsc.edu;bcgsc.ca	37	2	131673441	131673441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGEF4	.	.	.	.	AAGGTCTTCAGGC	.	43	5	46	0	.	292	C	131673441	T	C	131673441	3	2	121	1	0	0	0	0	1	0	0	0	908	1624	56	2		2	ARHGEF4	2	131673441	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	10838888	131673441	111525932	16	14475											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100450	168100450	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.T2548C	p.L850L	CAGCCATTAGACA	.	135	55	173	0	.	104	C	168100450	T	C	168100450	2	2	121	1	0	0	0	0	0	0	0	1	17427	1490	52	2		2	XIRP2	2	168100450	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	36427009	168100450	75098923	17	14476											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104420	168104420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.G6518T	p.G2173V	CAGTTGGAGGAAC	.	116	55	124	0	.	104	T	168104420	G	T	168104420	3	4	121	1	0	0	0	0	1	0	0	0	17427	1174	41	3	6548	3	XIRP2	2	168104420	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	3970	168104420	75094953	18	14477											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	ACCTTCATAGACC	.	190	85	236	0	.	636	G	179560596	A	G	179560596	2	3	121	1	0	0	0	0	0	0	0	1	16732	224	8	2		2	TTN	2	179560596	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	11456176	179560596	63638777	19	14478											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198267360	198267360	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SF3B1	NM_012433	exon14	c.A1997C	p.K666T	ACAATCTTAATAC	.	128	58	120	0	.	140	G	198267360	T	G	198267360	3	3	121	1	0	0	0	0	1	0	0	0	14149	1609	56	5	1965	5	SF3B1	2	198267360	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	18706764	198267360	44932013	20	14479											
TRAK2	66008	broad.mit.edu;bcgsc.ca	37	2	202245315	202245315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.C2696T	p.A899V	ACTGGGGCAGCAA	.	98	39	119	2	.	90	A	202245315	G	A	202245315	3	1	121	1	0	0	0	0	1	0	0	0	16447	1203	42	3	52	3	TRAK2	2	202245315	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	3977955	202245315	40954058	21	14480	79	2									
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202245316	202245316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.G2695C	p.A899P	CTGGGGCAGCAAA	.	99	42	118	0	.	90	G	202245316	C	G	202245316	3	3	121	1	0	0	0	0	1	0	0	0	16447	710	25	4	53	4	TRAK2	2	202245316	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1	202245316	40954057	22	14481	79	2									
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15604875	15604875	+	Missense_Mutation	SNP	C	C	G	rs149555880	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HACL1	NM_012260	exon16	c.G1694C	p.R565P	GCCTTCCGTGTGG	.	259	132	327	0	C|1.000;T|0.000	90	G	15604875	C	G	15604875	3	3	121	1	0	0	0	0	1	0	0	0	6941	652	23	4	50	4	HACL1	3	15604875	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10		15604875	182417555	23	14482											
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19554731	19554731	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNH8	NM_144633	exon13	c.C2349T	p.P783P	TGACCCCCCCAAC	.	99	31	130	0	.	524	T	19554731	C	T	19554731	2	4	121	1	0	0	0	0	0	0	0	1	8038	610	22	3		3	KCNH8	3	19554731	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	3949856	19554731	178467699	24	14483											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	bycluster	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.C122T	p.T41I	CCACTACCACAGC	.	111	53	121	0	.	24361	T	41266125	C	T	41266125	3	4	121	1	0	0	0	0	1	0	0	0	4016	507	18	3	128	3	CTNNB1	3	41266125	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	21711394	41266125	156756305	25	14484											
ZNF197	10168	ucsc.edu;bcgsc.ca	37	3	44684049	44684049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF197	NM_006991	exon6	c.A1427G	p.H476R	GGCGCCATTCAGG	.	40	5	40	0	.	230	G	44684049	A	G	44684049	3	3	121	1	0	0	0	0	1	0	0	0	17756	217	8	2	1445	2	ZNF197	3	44684049	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	3417924	44684049	153338381	26	14485											
TRAIP	10293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49867199	49867199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAIP	NM_005879	exon13	c.G1087A	p.E363K	GGGACTCCTGCAG	.	19	11	31	0	.	849	T	49867199	C	T	49867199	3	4	121	1	0	0	0	0	1	0	0	0	16445	869	30	3	334	3	TRAIP	3	49867199	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	5183150	49867199	148155231	27	14486											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64582656	64582656	+	Silent	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTS9	NM_182920	exon27	c.C4029G	p.T1343T	AGCACAGGTACTG	.	60	33	72	0	.	230	C	64582656	G	C	64582656	2	2	121	1	0	0	0	0	0	0	0	1	273	987	35	4		4	ADAMTS9	3	64582656	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	14715457	64582656	133439774	28	14487											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85984981	85984981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CADM2	NM_001167675	exon7	c.G765T	p.L255F	AATTTTGACTTGT	.	213	93	218	0	.	228	T	85984981	G	T	85984981	3	4	121	1	0	0	0	0	1	0	0	0	2567	1281	45	3	831	3	CADM2	3	85984981	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	21402325	85984981	112037449	29	14488											
ZBTB38	253461	ucsc.edu;bcgsc.ca	37	3	141162187	141162187	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZBTB38	NM_001080412	exon8	c.C957T	p.S319S	TTTTTCCAGGGAA	.	46	5	42	0	.	25	T	141162187	C	T	141162187	2	4	121	1	0	0	0	0	0	0	0	1	17536	581	21	3		3	ZBTB38	3	141162187	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	55177206	141162187	56860243	30	14489											
RGS12	6002	ucsc.edu;bcgsc.ca	37	4	3432244	3432244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS12	NM_002926	exon17	c.T3676C	p.S1226P	CCTGGTTCCACAG	.	36	4	60	0	.	226	C	3432244	T	C	3432244	3	2	121	1	0	0	0	0	1	0	0	0	13295	1783	62	2	3796	2	RGS12	4	3432244	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		3432244	187722032	31	14490											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726038	30726038	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDH7	NM_032457	exon1	c.T2994A	p.S998S	CAAATCTAGTTCC	.	64	22	42	0	.	229	A	30726038	T	A	30726038	2	1	121	1	0	0	0	0	0	0	0	1	11516	1509	53	4		4	PCDH7	4	30726038	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	27293794	30726038	160428238	32	14491											
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	46390679	46390679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.45delT	p.F15fs	GAAAACAAAAAGC	.	316	137	308	0	.	94	-	46390679	A	-	46390679	7	5	121	1	0	1	0	1	0	0	0	0	6161	127	5	0	1346	0	GABRA2	4	46390679	Frame_Shift_Del	DEL	A	TCGA-EP-A26S-01A-11D-A16V-10	15664641	46390679	144763597	33	14492	80	2									
GABRA2	2555	hgsc.bcm.edu;bcgsc.ca	37	4	46390684	46390684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.C40A	p.L14I	CAAAAAGCAGGAA	.	309	139	302	1	.	94	T	46390684	G	T	46390684	3	4	121	1	0	0	0	0	1	0	0	0	6161	971	34	3	1351	3	GABRA2	4	46390684	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	5	46390684	144763592	34	14493	80	2									
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69682095	69682095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UGT2B10	.	.	.	.	ATTAATGACATAA	.	241	97	236	0	.	65	C	69682095	G	C	69682095	3	2	121	1	0	0	0	0	1	0	0	0	16953	1290	45	4	360	4	UGT2B10	4	69682095	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	23291411	69682095	121472181	35	14494											
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	4	73981584	73981584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon23	c.C4238T	p.P1413L	TCTGATGGAAACT	.	45	4	40	0	.	234	A	73981584	G	A	73981584	3	1	121	1	0	0	0	0	1	0	0	0	646	1348	47	3	3621	3	ANKRD17	4	73981584	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	4299489	73981584	117172692	36	14495											
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73990633	73990633	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon18	c.G3489A	p.Q1163Q	TACCTCCTGTCTT	.	45	18	57	0	.	234	T	73990633	C	T	73990633	2	4	121	1	0	0	0	0	0	0	0	1	646	680	24	3		3	ANKRD17	4	73990633	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	9049	73990633	117163643	37	14496											
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74279198	74279198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALB	NM_000477	exon8	c.G905T	p.C302F	AGGAATGCTGTGA	.	69	30	62	0	.	96	T	74279198	G	T	74279198	3	4	121	1	0	0	0	0	1	0	0	0	486	1319	46	3	935	3	ALB	4	74279198	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	288565	74279198	116875078	38	14497											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79494388	79494388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANXA3	NM_005139	exon3	c.G70T	p.A24S	GTGGATGCTGAAG	.	27	13	43	0	.	90	T	79494388	G	T	79494388	3	4	121	1	0	0	0	0	1	0	0	0	719	1319	46	3	76	3	ANXA3	4	79494388	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	5215190	79494388	111659888	39	14498											
HELQ	113510	ucsc.edu;bcgsc.ca	37	4	84353404	84353404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HELQ	NM_133636	exon10	c.C2065A	p.P689T	CATAGGGAGCTCT	.	39	4	45	0	.	155	T	84353404	G	T	84353404	3	4	121	1	0	0	0	0	1	0	0	0	7047	1174	41	3	1276	3	HELQ	4	84353404	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	4859016	84353404	106800872	40	14499											
SPARCL1	8404	ucsc.edu;bcgsc.ca	37	4	88412785	88412785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPARCL1	NM_004684	exon5	c.A1276G	p.R426G	GCACCCTCATGTT	.	46	4	79	0	.	91	C	88412785	T	C	88412785	3	2	121	1	0	0	0	0	1	0	0	0	14995	1550	54	2	746	2	SPARCL1	4	88412785	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	4059381	88412785	102741491	41	14500											
SLC12A7	10723	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1094302	1094302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC12A7	NM_006598	exon2	c.C186A	p.S62R	AAAGAAGCTCTCT	.	60	20	123	2	.	138	T	1094302	G	T	1094302	3	4	121	1	0	0	0	0	1	0	0	0	14388	962	34	3	3157	3	SLC12A7	5	1094302	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10		1094302	179820958	42	14501											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701447	16701447	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MYO10	NM_012334	exon25	c.A3057G	p.R1019R	ACTTGTTCGCTGG	.	61	28	57	0	.	3	C	16701447	T	C	16701447	2	2	121	1	0	0	0	0	0	0	0	1	10062	1770	62	2		2	MYO10	5	16701447	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	15607145	16701447	164213813	43	14502											
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37815756	37815756	+	Silent	SNP	G	G	A	rs121918536	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDNF	NM_001190468	exon3	c.C684T	p.I228I	GAGTCAGATACAT	.	93	25	112	0	.	90	A	37815756	G	A	37815756	2	1	121	1	0	0	0	0	0	0	0	1	6322	932	33	3		3	GDNF	5	37815756	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	21114309	37815756	143099504	44	14503											
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54637586	54637586	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SKIV2L2	NM_015360	exon7	c.T768C	p.Y256Y	TCATTATATGAGA	.	102	42	99	0	.	92	C	54637586	T	C	54637586	2	2	121	1	0	0	0	0	0	0	0	1	14360	1413	49	2		2	SKIV2L2	5	54637586	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	16821830	54637586	126277674	45	14504											
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	125819257	125819257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GRAMD3	NM_001146319	exon9	c.A883C	p.N295H	TCTGAGAACTCTC	.	43	18	39	0	.	90	C	125819257	A	C	125819257	3	2	121	1	0	0	0	0	1	0	0	0	6751	246	9	5	1086	5	GRAMD3	5	125819257	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	71181671	125819257	55096003	46	14505											
RAPGEF6	51735	ucsc.edu;bcgsc.ca	37	5	130788807	130788807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAPGEF6	NM_001164387	exon22	c.T3155C	p.I1052T	TGGCGGATTTCCT	.	44	4	77	0	.	661	G	130788807	A	G	130788807	3	3	121	1	0	0	0	0	1	0	0	0	13048	333	12	2	2160	2	RAPGEF6	5	130788807	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	4969550	130788807	50126453	47	14506											
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137504197	137504197	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BRD8	NM_001164326	exon9	c.T823C	p.L275L	TCTTCAAGAGCTC	.	41	4	57	0	.	91	G	137504197	A	G	137504197	2	3	121	1	0	0	0	0	0	0	0	1	1506	69	3	2		2	BRD8	5	137504197	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	6715390	137504197	43411063	48	14507											
PCDHAC2	56134	ucsc.edu;bcgsc.ca	37	5	140389242	140389242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDHAC2	NM_018899	exon4	c.T2744C	p.V915A	CTCCAGTCGGTGC	.	51	4	55	0	.	26	C	140389242	T	C	140389242	3	2	121	1	0	0	0	0	1	0	0	0	11533	1667	58	2	2846	2	PCDHAC2	5	140389242	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	2885045	140389242	40526018	49	14508											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562164	176562164	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NSD1	NM_022455	exon2	c.G60A	p.V20V	TCCAGTGAATTTA	.	56	18	63	0	.	188	A	176562164	G	A	176562164	2	1	121	1	0	0	0	0	0	0	0	1	10669	1277	45	3		3	NSD1	5	176562164	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	36172922	176562164	4353096	50	14509											
RGS14	10636	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176798894	176798894	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS14	NM_006480	exon15	c.C1519A	p.R507R	CTGAACCGGGTGC	.	19	7	35	0	.	226	A	176798894	C	A	176798894	2	1	121	1	0	0	0	0	0	0	0	1	13297	643	23	1		1	RGS14	5	176798894	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	236730	176798894	4116366	51	14510											
PDLIM7	9260	ucsc.edu;bcgsc.ca	37	5	176916491	176916491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDLIM7	NM_005451	exon9	c.C772T	p.R258C	AGGTGCGGCTCTG	.	43	4	39	0	.	153	A	176916491	G	A	176916491	3	1	121	1	0	0	0	0	1	0	0	0	11684	1116	39	1	621	1	PDLIM7	5	176916491	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	117597	176916491	3998769	52	14511											
C6orf136	221545	ucsc.edu;bcgsc.ca	37	6	30619102	30619102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C6orf136	NM_001161376	exon4	c.T1166C	p.F389S	ATTATTTTGCACA	.	39	4	41	0	.	90	C	30619102	T	C	30619102	3	2	121	1	0	0	0	0	1	0	0	0	2331	1841	64	2	1180	2	C6orf136	6	30619102	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		30619102	140495965	53	14512											
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33144048	33144048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL11A2	NM_080680	exon28	c.T2202A	p.H734Q	ACCCTTATGACCC	.	82	36	81	0	.	95	T	33144048	A	T	33144048	3	4	121	1	0	0	0	0	1	0	0	0	3668	446	16	4	3164	4	COL11A2	6	33144048	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	2524946	33144048	137971019	54	14513											
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223037	44223037	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC35B2	NM_178148	exon4	c.C705T	p.Y235Y	GTGTTCGTAGCTG	.	63	28	77	0	.	91	A	44223037	G	A	44223037	2	1	121	1	0	0	0	0	0	0	0	1	14576	1140	40	1		1	SLC35B2	6	44223037	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	11078989	44223037	126892030	55	14514											
COL19A1	1310	ucsc.edu;bcgsc.ca	37	6	70916914	70916914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL19A1	NM_001858	exon51	c.G3365T	p.R1122I	GTGGAAGATGTAA	.	20	4	35	0	.	156	T	70916914	G	T	70916914	3	4	121	1	0	0	0	0	1	0	0	0	3676	942	33	3	3563	3	COL19A1	6	70916914	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	26693877	70916914	100198153	56	14515											
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99322272	99322272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXL4	NM_012160	exon9	c.C1748A	p.S583Y	TTACAAGATTCCA	.	108	49	116	0	.	227	T	99322272	G	T	99322272	3	4	121	1	0	0	0	0	1	0	0	0	5721	942	33	3	121	3	FBXL4	6	99322272	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	28405358	99322272	71792795	57	14516											
RPF2	84154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111318428	111318428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPF2	NM_032194	exon5	c.G277A	p.G93S	ATGTTTGGCTCCC	.	95	36	122	0	.	92	A	111318428	G	A	111318428	3	1	121	1	0	0	0	0	1	0	0	0	13547	1348	47	3	295	3	RPF2	6	111318428	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	11996156	111318428	59796639	58	14517											
LAMA4	3910	ucsc.edu;bcgsc.ca	37	6	112513042	112513042	+	Missense_Mutation	SNP	C	C	A	rs147695488	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LAMA4	NM_001105206	exon6	c.G514T	p.G172C	AGTAACCGGGAGC	.	44	4	41	0	C|0.999;T|0.001	140	A	112513042	C	A	112513042	3	1	121	1	0	0	0	0	1	0	0	0	8608	652	23	1	5093	1	LAMA4	6	112513042	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1194614	112513042	58602025	59	14518											
SHPRH	257218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146264776	146264776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SHPRH	NM_173082	exon9	c.G1741T	p.V581F	ATGGAACAAGCTT	.	178	70	231	1	.	92	A	146264776	C	A	146264776	3	1	121	1	0	0	0	0	1	0	0	0	14291	478	17	3	3442	3	SHPRH	6	146264776	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	33751734	146264776	24850291	60	14519											
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151161944	151161944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHG1	NM_001029884	exon17	c.T4070G	p.L1357R	ACTATCTTTGGAG	.	65	26	94	0	.	92	G	151161944	T	G	151161944	3	3	121	1	0	0	0	0	1	0	0	0	12068	1609	56	5	4128	5	PLEKHG1	6	151161944	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	4897168	151161944	19953123	61	14520											
RSPH10B	222967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	5967916	5967916	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPH10B	NM_173565	exon20	c.A2343G	p.E781E	GATAGCTTCTTCA	.	465	135	667	0	.	23	C	5967916	T	C	5967916	2	2	121	1	0	0	0	0	0	0	0	1	13703	1606	56	2		2	RSPH10B	7	5967916	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		5967916	153170747	62	14521											
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24705683	24705683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MPP6	NM_016447	exon9	c.G927C	p.M309I	AAAGATGATGTAT	.	87	40	76	0	.	90	C	24705683	G	C	24705683	3	2	121	1	0	0	0	0	1	0	0	0	9738	1290	45	4	953	4	MPP6	7	24705683	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	18737767	24705683	134432980	63	14522											
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87051459	87051459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB4	NM_018850	exon18	c.C2294T	p.S765F	AAAAAAGAAATAA	.	274	64	195	0	.	96	A	87051459	G	A	87051459	3	1	121	1	0	0	0	0	1	0	0	0	43	942	33	3	1610	3	ABCB4	7	87051459	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	62345776	87051459	72087204	64	14523											
PVRIG	79037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99818613	99818613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PVRIG	NM_024070	exon6	c.C720A	p.C240X	CAGCTGCCGCCCA	.	102	30	100	0	.	24	A	99818613	C	A	99818613	4	1	121	1	0	0	0	0	0	1	0	0	12838	747	26	3	738	3	PVRIG	7	99818613	Nonsense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	12767154	99818613	59320050	65	14524											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108131857	108131857	+	Silent	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PNPLA8	NM_001256008	exon7	c.T1680A	p.P560P	TACCTTAGGACAT	.	147	56	115	0	.	135	T	108131857	A	T	108131857	2	4	121	1	0	0	0	0	0	0	0	1	12171	407	15	4		4	PNPLA8	7	108131857	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	8313244	108131857	51006806	66	14525											
ST18	9705	ucsc.edu;bcgsc.ca	37	8	53085085	53085085	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ST18	NM_014682	exon10	c.C336A	p.S112S	CCTACTGGAGTTT	.	30	4	28	0	.	95	T	53085085	G	T	53085085	2	4	121	1	0	0	0	0	0	0	0	1	15211	1335	47	3		3	ST18	8	53085085	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10		53085085	93278937	67	14526											
RSPO2	340419	ucsc.edu;bcgsc.ca	37	8	109094801	109094801	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPO2	NM_178565	exon2	c.A66G	p.Q22Q	GTTGCCTTGGCAG	.	39	4	53	0	.	231	C	109094801	T	C	109094801	2	2	121	1	0	0	0	0	0	0	0	1	13710	1606	56	2		2	RSPO2	8	109094801	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	56009716	109094801	37269221	68	14527											
NOL6	65083	ucsc.edu;bcgsc.ca	37	9	33468068	33468068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOL6	NM_022917	exon11	c.A1384G	p.T462A	TGGGAGTCATCAA	.	45	6	55	0	.	92	C	33468068	T	C	33468068	3	2	121	1	0	0	0	0	1	0	0	0	10525	1667	58	2	2120	2	NOL6	9	33468068	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		33468068	107745363	69	14528											
NAA35	60560	ucsc.edu;bcgsc.ca	37	9	88622288	88622288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NAA35	NM_024635	exon14	c.G1132A	p.D378N	CTGGTGGATAACA	.	41	4	60	0	.	92	A	88622288	G	A	88622288	3	1	121	1	0	0	0	0	1	0	0	0	10123	1174	41	3	1182	3	NAA35	9	88622288	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	55154220	88622288	52591143	70	14529											
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	89763702	89763702	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf170	NM_001001709	exon1	c.G57T	p.G19G	CCTGGGGGTGTGG	.	27	14	34	0	.	90	T	89763702	G	T	89763702	2	4	121	1	0	0	0	0	0	0	0	1	2469	1219	43	3		3	C9orf170	9	89763702	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	1141414	89763702	51449729	71	14530											
NR6A1	2649	ucsc.edu;bcgsc.ca	37	9	127300557	127300557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NR6A1	NM_033334	exon6	c.A638G	p.Q213R	ATGTACTGTTCCC	.	46	4	55	0	.	189	C	127300557	T	C	127300557	3	2	121	1	0	0	0	0	1	0	0	0	10637	1580	55	2	824	2	NR6A1	9	127300557	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	37536855	127300557	13912874	72	14531											
RALGPS1	9649	ucsc.edu;bcgsc.ca	37	9	129975267	129975267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RALGPS1	NM_014636	exon17	c.G1491T	p.M497I	CTGGATGGTGCAG	.	38	4	63	0	.	227	T	129975267	G	T	129975267	3	4	121	1	0	0	0	0	1	0	0	0	13017	1348	47	3	1553	3	RALGPS1	9	129975267	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	2674710	129975267	11238164	73	14532											
ODF2	4957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131256871	131256871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ODF2	NM_153435	exon17	c.A2027C	p.E676A	TGGCTGAGTGCCA	.	38	14	52	0	.	69	C	131256871	A	C	131256871	3	2	121	1	0	0	0	0	1	0	0	0	10827	304	11	5	1952	5	ODF2	9	131256871	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	1281604	131256871	9956560	74	14533											
PSAP	5660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73610968	73610968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSAP	NM_002778	exon1	c.T11A	p.L4H	AGGAAGAGGGCGT	.	56	32	54	0	.	91	T	73610968	A	T	73610968	3	4	121	1	0	0	0	0	1	0	0	0	12643	304	11	4	1635	4	PSAP	10	73610968	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10		73610968	61923779	75	14534											
GLUD1	2746	ucsc.edu;bcgsc.ca	37	10	88813145	88813145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GLUD1	NM_005271	exon12	c.A1511G	p.D504G	ACGATGTCTTTCT	.	40	4	42	0	.	90	C	88813145	T	C	88813145	3	2	121	1	0	0	0	0	1	0	0	0	6476	1667	58	2	173	2	GLUD1	10	88813145	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	15202177	88813145	46721602	76	14535											
LIPA	3988	ucsc.edu;bcgsc.ca	37	10	91007405	91007405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LIPA	NM_000235	exon2	c.A1G	p.M1V	TTTTCATTCTGTA	.	37	4	51	0	.	90	C	91007405	T	C	91007405	3	2	121	1	0	0	0	0	1	0	0	0	8819	1507	52	2	1234	2	LIPA	10	91007405	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	2194260	91007405	44527342	77	14536											
CNNM1	26507	ucsc.edu;bcgsc.ca	37	10	101120689	101120689	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNNM1	NM_020348	exon3	c.C1815A	p.I605I	GAAGATCTCACCA	.	41	5	35	0	.	68	A	101120689	C	A	101120689	2	1	121	1	0	0	0	0	0	0	0	1	3612	903	32	3		3	CNNM1	10	101120689	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	10113284	101120689	34414058	78	14537											
PLEKHA1	59338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124166157	124166157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHA1	NM_001195608	exon6	c.G310T	p.V104L	GAATGGGTAAATG	.	139	62	149	0	.	226	T	124166157	G	T	124166157	3	4	121	1	0	0	0	0	1	0	0	0	12055	1261	44	3	324	3	PLEKHA1	10	124166157	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	23045468	124166157	11368590	79	14538											
CUZD1	50624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124605313	124605313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CUZD1	NM_022034	exon1	c.C47T	p.S16F	AAACAGGAGAGAA	.	20	7	34	0	.	92	A	124605313	G	A	124605313	3	1	121	1	0	0	0	0	1	0	0	0	4066	1174	41	3	1812	3	CUZD1	10	124605313	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	439156	124605313	10929434	80	14539											
CHST15	51363	ucsc.edu;bcgsc.ca	37	10	125805726	125805726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CHST15	NM_001270764	exon2	c.G3T	p.M1I	GTGCCTCATGGTA	.	19	4	31	0	.	91	A	125805726	C	A	125805726	3	1	121	1	0	0	0	0	1	0	0	0	3403	826	29	3	1710	3	CHST15	10	125805726	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1200413	125805726	9729021	81	14540											
PHRF1	57661	ucsc.edu;bcgsc.ca	37	11	609443	609443	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PHRF1	NM_020901	exon14	c.A3984G	p.E1328E	CGATGAAGACCCT	.	22	4	25	0	.	22	G	609443	A	G	609443	2	3	121	1	0	0	0	0	0	0	0	1	11861	69	3	2		2	PHRF1	11	609443	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10		609443	134397073	82	14541											
MOB2	81532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1491556	1491556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001172223	exon5	c.G653A	p.R218Q	AACTCCCGAGCAA	.	61	24	86	0	.	.	T	1491556	C	T	1491556	3	4	121	1	0	0	0	0	1	0	0	0	9681	652	23	1	157	1	MOB2	11	1491556	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	882113	1491556	133514960	83	14542											
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46455063	46455063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AMBRA1	NM_001267782	exon16	c.C2946A	p.F982L	CAGCCTGAAGACC	.	26	4	40	0	.	136	T	46455063	G	T	46455063	3	4	121	1	0	0	0	0	1	0	0	0	565	1281	45	3	979	3	AMBRA1	11	46455063	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	44963507	46455063	88551453	84	14543											
PATL1	219988	ucsc.edu;bcgsc.ca	37	11	59423998	59423998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PATL1	NM_152716	exon6	c.T697C	p.S233P	TTGGAGACATCCT	.	45	4	54	0	.	1	G	59423998	A	G	59423998	3	3	121	1	0	0	0	0	1	0	0	0	11475	275	10	2	1671	2	PATL1	11	59423998	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	12968935	59423998	75582518	85	14544											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62491884	62491884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HNRNPUL2	NM_001079559	exon2	c.A553C	p.S185R	TTTCACTATCCTG	.	88	42	122	0	.	22	G	62491884	T	G	62491884	3	3	121	1	0	0	0	0	1	0	0	0	7275	1522	53	5	1742	5	HNRNPUL2	11	62491884	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	3067886	62491884	72514632	86	14545											
NRXN2	9379	ucsc.edu;bcgsc.ca	37	11	64434897	64434897	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NRXN2	NM_015080	exon9	c.A1623G	p.G541G	GCCAGCTCCACCC	.	49	5	49	1	.	232	C	64434897	T	C	64434897	2	2	121	1	0	0	0	0	0	0	0	1	10666	1538	54	2		2	NRXN2	11	64434897	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	1943013	64434897	70571619	87	14546											
ALDH3B2	222	ucsc.edu;bcgsc.ca	37	11	67433076	67433076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALDH3B2	NM_001031615	exon7	c.A386G	p.E129G	CCCAGCTCCAGGG	.	44	5	58	0	.	226	C	67433076	T	C	67433076	3	2	121	1	0	0	0	0	1	0	0	0	500	1551	54	2	787	2	ALDH3B2	11	67433076	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	2998179	67433076	67573440	88	14547											
MRPL21	219927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	68664055	68664055	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRPL21	NM_181514	exon4	c.G324C	p.V108V	AGAGGTCACCTTC	.	69	30	77	0	.	90	G	68664055	C	G	68664055	2	3	121	1	0	0	0	0	0	0	0	1	9787	813	29	4		4	MRPL21	11	68664055	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1230979	68664055	66342461	89	14548											
MRGPRF	116535	ucsc.edu;bcgsc.ca	37	11	68773098	68773098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRGPRF	NM_001098515	exon3	c.G680A	p.R227Q	CGGGCCCGGCACT	.	60	5	61	0	.	90	T	68773098	C	T	68773098	3	4	121	1	0	0	0	0	1	0	0	0	9765	652	23	1	355	1	MRGPRF	11	68773098	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	109043	68773098	66233418	90	14549											
FZD4	8322	ucsc.edu;bcgsc.ca	37	11	86662521	86662521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FZD4	NM_012193	exon2	c.A1277G	p.K426R	TCTGTCTTTGTCC	.	31	4	44	0	.	1145	C	86662521	T	C	86662521	3	2	121	1	0	0	0	0	1	0	0	0	6132	1609	56	2	340	2	FZD4	11	86662521	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	17889423	86662521	48343995	91	14550											
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069054	89069054	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOX4	NM_016931	exon17	c.G1575C	p.R525R	TTTCCACCGAGGA	.	417	181	455	0	.	515	G	89069054	C	G	89069054	2	3	121	1	0	0	0	0	0	0	0	1	10558	494	18	4		4	NOX4	11	89069054	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	2406533	89069054	45937462	92	14551											
BACE1	23621	ucsc.edu;bcgsc.ca	37	11	117164684	117164684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BACE1	NM_012104	exon4	c.A608G	p.K203R	GTCTGCTTTACCA	.	37	4	46	0	.	91	C	117164684	T	C	117164684	3	2	121	1	0	0	0	0	1	0	0	0	1281	1609	56	2	921	2	BACE1	11	117164684	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	28095630	117164684	17841832	93	14552											
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118963906	118963907	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMBS	NM_000190	exon14	c.999_1000del	p.333_334del	CCAGAACTTGGGC	.	31	14	26	0	.	90	-	118963907	CT	-	118963906	7	5	121	1	0	1	0	1	0	0	0	0	7219	564	20	0	1053	0	HMBS	11	118963906	Frame_Shift_Del	DEL	CT	TCGA-EP-A26S-01A-11D-A16V-10	1799222	118963906	16042610	94	14553											
NLRX1	79671	broad.mit.edu;bcgsc.ca	37	11	119050855	119050855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NLRX1	NM_024618	exon7	c.A2125G	p.T709A	CGCATGACACCAG	.	73	6	59	0	.	92	G	119050855	A	G	119050855	3	3	121	1	0	0	0	0	1	0	0	0	10485	275	10	2	2147	2	NLRX1	11	119050855	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	86949	119050855	15955661	95	14554											
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29659790	29659790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMTC1	NM_001193451	exon18	c.G2638A	p.D880N	TTTGATCCTTTTC	.	119	47	149	0	.	90	T	29659790	C	T	29659790	3	4	121	1	0	0	0	0	1	0	0	0	16257	855	30	3	14	3	TMTC1	12	29659790	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10		29659790	104192105	96	14555											
TFCP2	7024	ucsc.edu;bcgsc.ca	37	12	51500323	51500323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TFCP2	NM_001173452	exon8	c.T902C	p.F301S	AGAGAAAAACTGC	.	32	4	50	0	.	91	G	51500323	A	G	51500323	3	3	121	1	0	0	0	0	1	0	0	0	15792	14	1	2	638	2	TFCP2	12	51500323	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	21840533	51500323	82351572	97	14556											
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53071186	53071186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KRT1	NM_006121	exon5	c.G1042T	p.D348Y	TGCTGTCCAGGTC	.	57	26	64	0	.	92	A	53071186	C	A	53071186	3	1	121	1	0	0	0	0	1	0	0	0	8447	855	30	3	912	3	KRT1	12	53071186	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1570863	53071186	80780709	98	14557											
INHBE	83729	ucsc.edu;bcgsc.ca	37	12	57849918	57849918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	INHBE	NM_031479	exon2	c.T340C	p.S114P	CACCTGTCCACTC	.	45	5	55	1	.	577	C	57849918	T	C	57849918	3	2	121	1	0	0	0	0	1	0	0	0	7744	1667	58	2	346	2	INHBE	12	57849918	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	4778732	57849918	76001977	99	14558											
RAB3IP	117177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70149324	70149324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAB3IP	NM_175623	exon2	c.T184G	p.S62A	CACCCTTCAGCTT	.	106	37	84	0	.	227	G	70149324	T	G	70149324	3	3	121	1	0	0	0	0	1	0	0	0	12938	1783	62	5	190	5	RAB3IP	12	70149324	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	12299406	70149324	63702571	100	14559											
DCN	1634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	91558424	91558424	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCN	NM_001920	exon3	c.282delC	p.T94fs	GATTTCGGTTATT	.	145	60	206	0	.	555	-	91558424	G	-	91558424	7	5	121	1	0	1	0	1	0	0	0	0	4297	1103	39	0	821	0	DCN	12	91558424	Frame_Shift_Del	DEL	G	TCGA-EP-A26S-01A-11D-A16V-10	21409100	91558424	42293471	101	14560											
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98938066	98938066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMPO	NM_001032283	exon5	c.G722A	p.G241E	AAGGCGGACCTCT	.	112	57	117	0	.	93	A	98938066	G	A	98938066	3	1	121	1	0	0	0	0	1	0	0	0	16234	1174	41	3	2264	3	TMPO	12	98938066	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	7379642	98938066	34913829	102	14561											
DEPDC4	120863	ucsc.edu;bcgsc.ca	37	12	100660700	100660700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DEPDC4	NM_152317	exon1	c.C155T	p.T52I	CTACCTGTCCTCC	.	19	4	37	0	.	90	A	100660700	G	A	100660700	3	1	121	1	0	0	0	0	1	0	0	0	4441	1377	48	3	749	3	DEPDC4	12	100660700	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	1722634	100660700	33191195	103	14562											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105557965	105557965	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1033	NM_015275	exon31	c.G3234A	p.E1078E	TAGAGAGAAATAC	.	77	31	106	0	.	91	A	105557965	G	A	105557965	2	1	121	1	0	0	0	0	0	0	0	1	8206	933	33	3		3	KIAA1033	12	105557965	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	4897265	105557965	28293930	104	14563											
MLXIP	22877	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122614579	122614579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MLXIP	NM_014938	exon6	c.T830C	p.L277P	ACATGCTCATGTC	.	66	31	62	1	.	92	C	122614579	T	C	122614579	3	2	121	1	0	0	0	0	1	0	0	0	9636	1551	54	2	852	2	MLXIP	12	122614579	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	17056614	122614579	11237316	105	14564											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124377824	124377824	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH10	NM_207437	exon52	c.C8686T	p.L2896L	TCTATCCTGAGTC	.	67	28	90	0	.	95	T	124377824	C	T	124377824	2	4	121	1	0	0	0	0	0	0	0	1	4598	680	24	3		3	DNAH10	12	124377824	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1763245	124377824	9474071	106	14565											
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20567272	20567272	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZMYM2	NM_001190964	exon4	c.G60A	p.G20G	ATTAGGGAGTACG	.	123	54	99	0	.	685	A	20567272	G	A	20567272	2	1	121	1	0	0	0	0	0	0	0	1	17697	1161	41	3		3	ZMYM2	13	20567272	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10		20567272	94602606	107	14566											
ATP8A2	51761	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	25946367	25946367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP8A2	NM_016529	exon1	c.G17T	p.G6V	GCGCAGGCCTGGA	.	26	14	30	0	.	138	T	25946367	G	T	25946367	3	4	121	1	0	0	0	0	1	0	0	0	1193	1203	42	3	19	3	ATP8A2	13	25946367	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	5379095	25946367	89223511	108	14567											
GTF3A	2971	ucsc.edu;bcgsc.ca	37	13	28009317	28009317	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_002097	exon8	c.A921G	p.K307K	GAAGAAAATGAAG	.	38	4	58	0	.	.	G	28009317	A	G	28009317	2	3	121	1	0	0	0	0	0	0	0	1	6871	11	1	2		2	GTF3A	13	28009317	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	2062950	28009317	87160561	109	14568											
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98896898	98896898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FARP1	NM_001001715	exon3	c.A325G	p.T109A	TCTTACACAAACT	.	57	32	57	0	.	290	G	98896898	A	G	98896898	3	3	121	1	0	0	0	0	1	0	0	0	5676	159	6	2	331	2	FARP1	13	98896898	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	70887581	98896898	16272980	110	14569											
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917704	26917704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOVA1	NM_002515	exon5	c.C985A	p.L329I	TGTTGAGATTATA	.	20	11	26	0	.	229	T	26917704	G	T	26917704	3	4	121	1	0	0	0	0	1	0	0	0	10554	942	33	3	542	3	NOVA1	14	26917704	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10		26917704	80431836	111	14570											
TXNDC16	57544	ucsc.edu;bcgsc.ca	37	14	52981605	52981605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TXNDC16	NM_020784	exon8	c.A598G	p.S200G	CAATACTTTCCAA	.	47	4	50	0	.	22	C	52981605	T	C	52981605	3	2	121	1	0	0	0	0	1	0	0	0	16792	1609	56	2	1935	2	TXNDC16	14	52981605	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	26063901	52981605	54367935	112	14571											
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62550920	62550920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SYT16	NM_031914	exon5	c.G1441T	p.G481W	AGTGGAGGGTCTC	.	71	26	81	0	.	23	T	62550920	G	T	62550920	3	4	121	1	0	0	0	0	1	0	0	0	15469	1000	35	3	1459	3	SYT16	14	62550920	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	9569315	62550920	44798620	113	14572											
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	63858560	63858560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPP2R5E	NM_006246	exon10	c.G929A	p.W310X	TTAGGCCAAAATT	.	88	34	122	0	.	658	T	63858560	C	T	63858560	4	4	121	1	0	0	0	0	0	1	0	0	12396	595	21	3	494	3	PPP2R5E	14	63858560	Nonsense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1307640	63858560	43490980	114	14573											
FAM161B	145483	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74409115	74409115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM161B	NM_152445	exon4	c.A1418T	p.H473L	TGAGGGTGGCGCA	.	193	75	227	2	.	91	A	74409115	T	A	74409115	3	1	121	1	0	0	0	0	1	0	0	0	5473	1696	59	4	738	4	FAM161B	14	74409115	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	10550555	74409115	32940425	115	14574											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81737182	81737182	+	Silent	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STON2	NM_001256430	exon7	c.T2445G	p.L815L	GAGTTCAAGGTGG	.	34	11	46	0	.	95	C	81737182	A	C	81737182	2	2	121	1	0	0	0	0	0	0	0	1	15317	117	5	5		5	STON2	14	81737182	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	7328067	81737182	25612358	116	14575											
RPS6KA5	9252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91338575	91338575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPS6KA5	NM_004755	exon17	c.C2252G	p.T751S	GTACTGGTGCTAG	.	224	108	215	0	.	979	C	91338575	G	C	91338575	3	2	121	1	0	0	0	0	1	0	0	0	13654	1261	44	4	160	4	RPS6KA5	14	91338575	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	9601393	91338575	16010965	117	14576											
DUOXA2	405753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45408389	45408389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DUOXA2	NM_207581	exon3	c.C273A	p.S91R	CTTCAGCGCAGCG	.	43	26	41	0	.	226	A	45408389	C	A	45408389	3	1	121	1	0	0	0	0	1	0	0	0	4803	767	27	1	283	1	DUOXA2	15	45408389	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10		45408389	57123003	118	14577											
PARP6	56965	bcgsc.ca;mdanderson.org	37	15	72541589	72541589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PARP6	NM_020214	exon19	c.T1558C	p.S520P	TACCTGAGTATCC	.	26	5	29	0	.	522	G	72541589	A	G	72541589	3	3	121	1	0	0	0	0	1	0	0	0	11464	304	11	2	354	2	PARP6	15	72541589	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	27133200	72541589	29989803	119	14578											
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99491869	99491869	+	Missense_Mutation	SNP	C	C	G	rs45598038	bycluster;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IGF1R	NM_000875	exon20	c.C3654G	p.N1218K	GTCCAACGAGCAA	.	31	14	27	0	.	1490	G	99491869	C	G	99491869	3	3	121	1	0	0	0	0	1	0	0	0	7571	535	19	4	3732	4	IGF1R	15	99491869	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	26950280	99491869	3039523	120	14579											
KCTD5	54442	ucsc.edu;bcgsc.ca	37	16	2732726	2732726	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCTD5	NM_018992	exon1	c.G177A	p.R59R	CACTCGGCAGACC	.	43	4	61	0	.	90	A	2732726	G	A	2732726	2	1	121	1	0	0	0	0	0	0	0	1	8112	1190	42	3		3	KCTD5	16	2732726	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10		2732726	87622027	121	14580											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30977205	30977205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SETD1A	NM_014712	exon8	c.G2003T	p.R668L	TGGACCGACTTGG	.	113	48	113	0	.	93	T	30977205	G	T	30977205	3	4	121	1	0	0	0	0	1	0	0	0	14130	1058	37	1	2029	1	SETD1A	16	30977205	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	28244479	30977205	59377548	122	14581											
PDP2	57546	ucsc.edu;bcgsc.ca	37	16	66918397	66918397	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDP2	NM_020786	exon2	c.A210G	p.E70E	AGAGGAAGATGAT	.	48	4	45	0	.	91	G	66918397	A	G	66918397	2	3	121	1	0	0	0	0	0	0	0	1	11686	69	3	2		2	PDP2	16	66918397	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	35941192	66918397	23436356	123	14582											
WWP2	11060	ucsc.edu;bcgsc.ca	37	16	69973316	69973316	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WWP2	NM_001270454	exon23	c.G2513C	p.C838S	ACACCTGGTGAGC	.	25	4	36	0	.	658	C	69973316	G	C	69973316	3	2	121	1	0	0	0	0	1	0	0	0	17413	1362	47	4	2603	4	WWP2	16	69973316	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	3054919	69973316	20381437	124	14583											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7734001	7734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH2	NM_020877	exon78	c.A12071G	p.Y4024C	GCCTCTATCTCGA	.	62	24	99	0	.	102	G	7734001	A	G	7734001	3	3	121	1	0	0	0	0	1	0	0	0	4602	449	16	2	12381	2	DNAH2	17	7734001	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10		7734001	73461209	125	14584											
DHRS7C	201140	ucsc.edu;bcgsc.ca	37	17	9683305	9683305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001220493	exon3	c.T318C	p.C106C	TGGGACACAGCTG	.	42	4	55	0	.	.	G	9683305	A	G	9683305	2	3	121	1	0	0	0	0	0	0	0	1	4497	157	6	2		2	DHRS7C	17	9683305	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	1949304	9683305	71511905	126	14585											
RNF135	84282	ucsc.edu;bcgsc.ca	37	17	29326154	29326154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RNF135	NM_032322	exon5	c.G1244T	p.W415L	CCTTCTGGCTGTA	.	34	4	47	0	.	227	T	29326154	G	T	29326154	3	4	121	1	0	0	0	0	1	0	0	0	13440	1357	47	3	1331	3	RNF135	17	29326154	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	19642849	29326154	51869056	127	14586											
SP2	6668	ucsc.edu;bcgsc.ca	37	17	46005144	46005144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SP2	NM_003110	exon7	c.A1796G	p.H599R	GTGACCACCTCAC	.	34	4	45	0	.	90	G	46005144	A	G	46005144	3	3	121	1	0	0	0	0	1	0	0	0	14964	159	6	2	1822	2	SP2	17	46005144	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	16678990	46005144	35190066	128	14587											
NFE2L1	4779	ucsc.edu;bcgsc.ca	37	17	46135846	46135846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NFE2L1	NM_003204	exon6	c.G1162T	p.A388S	CCTGTGGCCAGTA	.	44	4	39	0	.	91	T	46135846	G	T	46135846	3	4	121	1	0	0	0	0	1	0	0	0	10367	1203	42	3	1180	3	NFE2L1	17	46135846	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	130702	46135846	35059364	129	14588											
DLX4	1748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48046980	48046980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DLX4	NM_138281	exon1	c.C148T	p.P50S	TCCAGGCCGTATG	.	26	12	33	0	.	90	T	48046980	C	T	48046980	3	4	121	1	0	0	0	0	1	0	0	0	4573	739	26	3	150	3	DLX4	17	48046980	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1911134	48046980	33148230	130	14589											
SPAG9	9043	ucsc.edu;bcgsc.ca	37	17	49072464	49072464	+	Missense_Mutation	SNP	C	C	A	rs201501137	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPAG9	NM_001130528	exon18	c.G2180T	p.R727L	GCACTTCGCTGTT	.	39	4	52	0	C|0.999;T|0.000	659	A	49072464	C	A	49072464	3	1	121	1	0	0	0	0	1	0	0	0	14985	884	31	1	1837	1	SPAG9	17	49072464	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1025484	49072464	32122746	131	14590											
LPO	4025	ucsc.edu;bcgsc.ca	37	17	56329584	56329584	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LPO	NM_006151	exon8	c.C822T	p.C274C	GAAATGCATGCCT	.	46	4	50	0	.	91	T	56329584	C	T	56329584	2	4	121	1	0	0	0	0	0	0	0	1	8922	718	25	3		3	LPO	17	56329584	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	7257120	56329584	24865626	132	14591											
CD300LF	146722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72700898	72700898	+	Missense_Mutation	SNP	C	C	A	rs146550147		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CD300LF	NM_139018	exon2	c.G101T	p.G34V	AAGGAGCCCCGCT	.	84	35	90	0	C|1.000;A|0.000	23	A	72700898	C	A	72700898	3	1	121	1	0	0	0	0	1	0	0	0	3001	739	26	3	795	3	CD300LF	17	72700898	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	16371314	72700898	8494312	133	14592											
UNK	85451	ucsc.edu;bcgsc.ca	37	17	73808351	73808351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UNK	NM_001080419	exon3	c.C473T	p.S158F	TCCGCTCCCCTGT	.	48	4	61	0	.	68	T	73808351	C	T	73808351	3	4	121	1	0	0	0	0	1	0	0	0	16997	855	30	3	715	3	UNK	17	73808351	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1107453	73808351	7386859	134	14593											
CEP192	55125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13103583	13103583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CEP192	NM_032142	exon39	c.T6947C	p.V2316A	CTTATGTCAAGGT	.	39	4	53	0	.	27	C	13103583	T	C	13103583	3	2	121	1	0	0	0	0	1	0	0	0	3251	1667	58	2	7097	2	CEP192	18	13103583	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		13103583	64973665	135	14594											
SERPINB13	5275	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61255920	61255920	+	Missense_Mutation	SNP	G	G	A	rs139825462		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERPINB13	NM_012397	exon2	c.G19A	p.V7I	GGCGCCGTCAGCA	.	128	68	156	1	G|1.000;A|0.000	227	A	61255920	G	A	61255920	3	1	121	1	0	0	0	0	1	0	0	0	14100	1145	40	1	21	1	SERPINB13	18	61255920	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	48152337	61255920	16821328	136	14595											
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76754127	76754127	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SALL3	NM_171999	exon2	c.C2136T	p.C712C	GATCTGCGGCCGC	.	21	9	33	0	.	155	T	76754127	C	T	76754127	2	4	121	1	0	0	0	0	0	0	0	1	13812	776	27	1		1	SALL3	18	76754127	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	15498207	76754127	1323121	137	14596											
WDR18	57418	ucsc.edu;bcgsc.ca	37	19	990892	990892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR18	NM_024100	exon5	c.T638C	p.L213P	CCGTCCTCTTTGA	.	49	5	75	0	.	91	C	990892	T	C	990892	3	2	121	1	0	0	0	0	1	0	0	0	17275	1551	54	2	656	2	WDR18	19	990892	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10		990892	58138091	138	14597											
BTBD2	55643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1997425	1997425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BTBD2	NM_017797	exon2	c.A445G	p.M149V	TGAACATGGCATC	.	27	15	38	0	.	92	C	1997425	T	C	1997425	3	2	121	1	0	0	0	0	1	0	0	0	1543	1464	51	2	1164	2	BTBD2	19	1997425	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	1006533	1997425	57131558	139	14598											
SMARCA4	6597	ucsc.edu;bcgsc.ca	37	19	11118594	11118594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SMARCA4	NM_003072	exon14	c.A2018G	p.Q673R	AAGAGCAGCCGCA	.	28	4	22	0	.	1523	G	11118594	A	G	11118594	3	3	121	1	0	0	0	0	1	0	0	0	14770	188	7	2	2068	2	SMARCA4	19	11118594	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	9121169	11118594	48010389	140	14599											
CLEC17A	388512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14705334	14705334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CLEC17A	NM_207390	exon5	c.A283T	p.S95C	GGTTCAAGTGCTC	.	66	31	57	0	.	22	T	14705334	A	T	14705334	3	4	121	1	0	0	0	0	1	0	0	0	3501	72	3	4	246	4	CLEC17A	19	14705334	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	3586740	14705334	44423649	141	14600											
NWD1	284434	ucsc.edu;bcgsc.ca	37	19	16874716	16874716	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NWD1	NM_001007525	exon9	c.T2211C	p.L737L	CCTGCTTCACTCG	.	35	4	37	0	.	7	C	16874716	T	C	16874716	2	2	121	1	0	0	0	0	0	0	0	1	10781	1770	62	2		2	NWD1	19	16874716	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	2169382	16874716	42254267	142	14601											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17950393	17950393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	JAK3	NM_000215	exon10	c.G1334A	p.R445Q	TGGGGTCGGCTGA	.	20	8	15	0	.	2418	T	17950393	C	T	17950393	3	4	121	1	0	0	0	0	1	0	0	0	7939	884	31	1	2100	1	JAK3	19	17950393	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	1075677	17950393	41178590	143	14602											
ZNF43	7594	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21990784	21990784	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF43	NM_001256653	exon4	c.A2082G	p.K694K	AAAAGCTTTGCCA	.	13	6	17	0	.	154	C	21990784	T	C	21990784	2	2	121	1	0	0	0	0	0	0	0	1	17900	1606	56	2		2	ZNF43	19	21990784	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	4040391	21990784	37138199	144	14603											
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22363944	22363944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF676	NM_001001411	exon3	c.C575A	p.T192N	TCTCCAGTATGAA	.	55	29	46	0	.	90	T	22363944	G	T	22363944	3	4	121	1	0	0	0	0	1	0	0	0	18080	1029	36	3	1195	3	ZNF676	19	22363944	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	373160	22363944	36765039	145	14604											
PLEKHF1	79156	ucsc.edu;bcgsc.ca	37	19	30164931	30164931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHF1	NM_024310	exon2	c.T185C	p.L62P	ACATCCTGGTGTA	.	26	4	35	0	.	226	C	30164931	T	C	30164931	3	2	121	1	0	0	0	0	1	0	0	0	12066	1580	55	2	187	2	PLEKHF1	19	30164931	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	7800987	30164931	28964052	146	14605											
CATSPERG	57828	ucsc.edu;bcgsc.ca	37	19	38827958	38827958	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CATSPERG	NM_021185	exon2	c.G84T	p.V28V	GGCAGTGCTCCTG	.	46	4	38	0	.	92	T	38827958	G	T	38827958	2	4	121	1	0	0	0	0	0	0	0	1	2692	1306	46	3		3	CATSPERG	19	38827958	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	8663027	38827958	20301025	147	14606											
HIPK4	147746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40895613	40895613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIPK4	NM_144685	exon1	c.A197G	p.D66G	TCAGGGTCTAGGC	.	70	33	118	0	.	334	C	40895613	T	C	40895613	3	2	121	1	0	0	0	0	1	0	0	0	7119	1667	58	2	1669	2	HIPK4	19	40895613	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	2067655	40895613	18233370	148	14607											
ATP1A3	478	ucsc.edu;bcgsc.ca	37	19	42492480	42492480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP1A3	NM_001256214	exon3	c.A182G	p.D61G	ACACAGTCTGTGT	.	39	4	27	0	.	92	C	42492480	T	C	42492480	3	2	121	1	0	0	0	0	1	0	0	0	1130	1667	58	2	2982	2	ATP1A3	19	42492480	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	1596867	42492480	16636503	149	14608											
EML2	24139	ucsc.edu;bcgsc.ca	37	19	46112992	46112992	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EML2	NM_001193268	exon22	c.T2482C	p.L828L	CCCACAAGAAGGC	.	41	4	35	0	.	154	G	46112992	A	G	46112992	2	3	121	1	0	0	0	0	0	0	0	1	5097	69	3	2		2	EML2	19	46112992	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	3620512	46112992	13015991	150	14609											
FAM83E	54854	ucsc.edu;bcgsc.ca	37	19	49113247	49113247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM83E	NM_017708	exon3	c.T644C	p.V215A	ACACGGACATCCA	.	28	4	35	0	.	91	G	49113247	A	G	49113247	3	3	121	1	0	0	0	0	1	0	0	0	5637	275	10	2	804	2	FAM83E	19	49113247	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	3000255	49113247	10015736	151	14610											
CGB7	94027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49558233	49558233	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CGB7	NM_033142	exon2	c.C48T	p.G16G	TGTCCCGCCCATG	.	21	9	21	0	.	90	A	49558233	G	A	49558233	2	1	121	1	0	0	0	0	0	0	0	1	3300	1074	38	1		1	CGB7	19	49558233	Silent	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	444986	49558233	9570750	152	14611											
KCNA7	3743	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49573841	49573841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNA7	NM_031886	exon2	c.C850T	p.R284C	AGACACGCACCAA	.	28	7	33	0	.	90	A	49573841	G	A	49573841	3	1	121	1	0	0	0	0	1	0	0	0	8008	1087	38	1	524	1	KCNA7	19	49573841	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	15608	49573841	9555142	153	14612											
TBC1D17	79735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50387721	50387721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TBC1D17	NM_024682	exon12	c.G1249A	p.V417I	GGCTACGTCCAGG	.	80	39	87	0	.	90	A	50387721	G	A	50387721	3	1	121	1	0	0	0	0	1	0	0	0	15603	1145	40	1	1295	1	TBC1D17	19	50387721	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	813880	50387721	8741262	154	14613											
ZNF160	90338	ucsc.edu;bcgsc.ca	37	19	53572755	53572755	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF160	NM_001102603	exon7	c.T1032C	p.N344N	ACACTCATTACAC	.	61	6	58	0	.	90	G	53572755	A	G	53572755	2	3	121	1	0	0	0	0	0	0	0	1	17736	214	8	2		2	ZNF160	19	53572755	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	3185034	53572755	5556228	155	14614											
ZSCAN5A	79149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56735066	56735066	+	Silent	SNP	T	T	C	rs199886337		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZSCAN5A	NM_024303	exon3	c.A522G	p.P174P	TTCCCCTGGACGC	.	32	16	44	0	T|0.999;C|0.001	155	C	56735066	T	C	56735066	2	2	121	1	0	0	0	0	0	0	0	1	18235	1567	55	2		2	ZSCAN5A	19	56735066	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	3162311	56735066	2393917	156	14615											
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133787	57133787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF71	NM_021216	exon3	c.G1132T	p.G378C	CACACCGGCGAGA	.	78	30	118	0	.	91	T	57133787	G	T	57133787	3	4	121	1	0	0	0	0	1	0	0	0	18111	1116	39	1	1134	1	ZNF71	19	57133787	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	398721	57133787	1995196	157	14616											
SIGLEC1	6614	ucsc.edu;bcgsc.ca	37	20	3682281	3682281	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SIGLEC1	NM_023068	exon6	c.T1236C	p.P412P	AGTGAGAGGCGGG	.	36	4	36	0	.	167	G	3682281	A	G	3682281	2	3	121	1	0	0	0	0	0	0	0	1	14305	291	11	2		2	SIGLEC1	20	3682281	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10		3682281	59343239	158	14617											
CST7	8530	ucsc.edu;bcgsc.ca	37	20	24939666	24939666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CST7	NM_003650	exon3	c.C346T	p.H116Y	ACCAACCACACCT	.	37	4	40	0	.	91	T	24939666	C	T	24939666	3	4	121	1	0	0	0	0	1	0	0	0	3977	594	21	3	356	3	CST7	20	24939666	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	21257385	24939666	38085854	159	14618											
EEF1A2	1917	ucsc.edu;mdanderson.org	37	20	62122018	62122018	+	Silent	SNP	C	C	A	rs139282309	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EEF1A2	NM_001958	exon6	c.G843T	p.A281A	CACTGGCGCAAAG	.	17	10	13	0	C|1.000;T|0.000	90	A	62122018	C	A	62122018	2	1	121	1	0	0	0	0	0	0	0	1	4924	755	27	1		1	EEF1A2	20	62122018	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	37182352	62122018	903502	160	14619											
PRDM15	63977	ucsc.edu;bcgsc.ca	37	21	43291640	43291640	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRDM15	NM_022115	exon4	c.G504A	p.A168A	TGCACTCGCAGGG	.	42	4	31	0	.	90	T	43291640	C	T	43291640	2	4	121	1	0	0	0	0	0	0	0	1	12456	871	31	1		1	PRDM15	21	43291640	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10		43291640	4838255	161	14620											
SCARF2	91179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20784723	20784723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCARF2	NM_182895	exon6	c.G1195A	p.G399R	GGGGCCCGTGGAC	.	22	14	19	0	.	341	T	20784723	C	T	20784723	3	4	121	1	0	0	0	0	1	0	0	0	13884	652	23	1	1441	1	SCARF2	22	20784723	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10		20784723	30519843	162	14621											
GAS2L1	10634	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29704470	29704470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GAS2L1	NM_152237	exon2	c.G375T	p.E125D	GACTGAGGACCTG	.	18	6	30	0	.	90	T	29704470	G	T	29704470	3	4	121	1	0	0	0	0	1	0	0	0	6246	991	35	3	377	3	GAS2L1	22	29704470	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	8919747	29704470	21600096	163	14622											
TRIOBP	11078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38120914	38120914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIOBP	NM_001039141	exon7	c.A2351G	p.N784S	CTCCCAATAGAGC	.	138	69	148	0	.	136	G	38120914	A	G	38120914	3	3	121	1	0	0	0	0	1	0	0	0	16550	101	4	2	2369	2	TRIOBP	22	38120914	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	8416444	38120914	13183652	164	14623											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41560092	41560092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EP300	NM_001429	exon22	c.A3764T	p.H1255L	AGATGCATCAGAT	.	217	98	232	0	.	2011	T	41560092	A	T	41560092	3	4	121	1	0	0	0	0	1	0	0	0	5148	217	8	4	3850	4	EP300	22	41560092	Missense_Mutation	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	3439178	41560092	9744474	165	14624											
CPT1B	1375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51010728	51010728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CPT1B	NM_001145135	exon12	c.C1362G	p.D454E	GGATTTGTCAAAC	.	34	16	54	0	.	116	C	51010728	G	C	51010728	3	2	121	1	0	0	0	0	1	0	0	0	3832	1368	48	4	988	4	CPT1B	22	51010728	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	9450636	51010728	293838	166	14625											
GDPD2	54857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69644840	69644840	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDPD2	NM_017711	exon2	c.C6T	p.A2A	CATGGCCGAGTCC	.	45	43	46	0	.	132	T	69644840	C	T	69644840	2	4	121	1	0	0	0	0	0	0	0	1	6324	639	23	1		1	GDPD2	23	69644840	Silent	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10		69644840	85625720	167	14626											
MED12	9968	ucsc.edu;bcgsc.ca	37	X	70349266	70349266	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MED12	NM_005120	exon26	c.T3678C	p.A1226A	CAAGGCTGTGTTT	.	47	4	75	0	.	272	C	70349266	T	C	70349266	2	2	121	1	0	0	0	0	0	0	0	1	9428	1567	55	2		2	MED12	23	70349266	Silent	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	704426	70349266	84921294	168	14627											
ABCB7	22	ucsc.edu;bcgsc.ca	37	X	74288850	74288850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB7	NM_004299	exon12	c.G1654T	p.V552L	GAGGTACCACTCC	.	31	4	39	0	.	131	A	74288850	C	A	74288850	3	1	121	1	0	0	0	0	1	0	0	0	46	507	18	3	627	3	ABCB7	23	74288850	Missense_Mutation	SNP	C	TCGA-EP-A26S-01A-11D-A16V-10	3939584	74288850	80981710	169	14628											
ZCCHC5	203430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77913190	77913190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZCCHC5	NM_152694	exon2	c.C728A	p.T243N	CTGAAGGTTAAAG	.	38	35	39	1	.	131	T	77913190	G	T	77913190	3	4	121	1	0	0	0	0	1	0	0	0	17588	1261	44	3	703	3	ZCCHC5	23	77913190	Missense_Mutation	SNP	G	TCGA-EP-A26S-01A-11D-A16V-10	3624340	77913190	77357370	170	14629											
SH3BGRL	6451	ucsc.edu;bcgsc.ca	37	X	80457736	80457736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SH3BGRL	NM_003022	exon1	c.T37C	p.S13P	TCTGGCTCTACAG	.	16	4	17	0	.	131	C	80457736	T	C	80457736	3	2	121	1	0	0	0	0	1	0	0	0	14241	1551	54	2	39	2	SH3BGRL	23	80457736	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	2544546	80457736	74812824	171	14630											
MTMR1	8776	ucsc.edu;bcgsc.ca	37	X	149905905	149905905	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MTMR1	NM_003828	exon11	c.A1434G	p.G478G	CTTTGGACACAGG	.	39	4	64	0	.	131	G	149905905	A	G	149905905	2	3	121	1	0	0	0	0	0	0	0	1	9938	262	10	2		2	MTMR1	23	149905905	Silent	SNP	A	TCGA-EP-A26S-01A-11D-A16V-10	69448169	149905905	5364655	172	14631											
PLXNB3	5365	ucsc.edu;bcgsc.ca	37	X	153039372	153039372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLXNB3	NM_001163257	exon21	c.T3407A	p.V1136E	CTGCTGTACCAGA	.	15	4	28	0	.	130	A	153039372	T	A	153039372	3	1	121	1	0	0	0	0	1	0	0	0	12125	1638	57	4	3530	4	PLXNB3	23	153039372	Missense_Mutation	SNP	T	TCGA-EP-A26S-01A-11D-A16V-10	3133467	153039372	2231188	173	14632											
ICMT	23463	broad.mit.edu;ucsc.edu	37	1	6292060	6292060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ICMT	NM_012405	exon4	c.G574T	p.E192X	ATTTTTCATTCTG	.	182	44	157	2	.	650	A	6292060	C	A	6292060	4	1	122	1	0	0	0	0	0	1	0	0	7485	835	29	3	288	3	ICMT	1	6292060	Nonsense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		6292060	242958561	1	14633											
PGD	5226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10471547	10471547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGD	NM_002631	exon7	c.A592T	p.I198F	CAGCTGATCTGTG	.	134	48	175	0	.	91	T	10471547	A	T	10471547	3	4	122	1	0	0	0	0	1	0	0	0	11787	333	12	4	618	4	PGD	1	10471547	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	4179487	10471547	238779074	2	14634											
VPS13D	55187	hgsc.bcm.edu;bcgsc.ca	37	1	12516140	12516140	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13D	NM_015378	exon66	c.C12420A	p.A4140A	TGCAGCCACAAGT	.	62	4	84	0	.	95	A	12516140	C	A	12516140	2	1	122	1	0	0	0	0	0	0	0	1	17189	581	21	3		3	VPS13D	1	12516140	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2044593	12516140	236734481	3	14635											
PRAMEF19	645414	broad.mit.edu;bcgsc.ca	37	1	13475005	13475005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099790	exon3	c.G1124A	p.R375H	GAGCAGCGGCTCA	.	909	227	1324	1	.	.	T	13475005	C	T	13475005	3	4	122	1	0	0	0	0	1	0	0	0	12434	768	27	1	319	1	PRAMEF19	1	13475005	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	958865	13475005	235775616	4	14636											
PADI4	23569	hgsc.bcm.edu;bcgsc.ca	37	1	17674451	17674451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PADI4	NM_012387	exon10	c.G1063T	p.G355C	GAGATCGGCTACA	.	65	4	119	0	.	70	T	17674451	G	T	17674451	3	4	122	1	0	0	0	0	1	0	0	0	11380	1116	39	1	1101	1	PADI4	1	17674451	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	4199446	17674451	231576170	5	14637											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19407897	19407897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon103	c.G15179A	p.R5060Q	AGCCTCCGCAAGA	.	103	11	94	0	.	612	T	19407897	C	T	19407897	3	4	122	1	0	0	0	0	1	0	0	0	16901	652	23	1	388	1	UBR4	1	19407897	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1733446	19407897	229842724	6	14638											
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19433073	19433073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon83	c.G12383T	p.W4128L	CGCAGCCAGTTGT	.	30	4	46	0	.	612	A	19433073	C	A	19433073	3	1	122	1	0	0	0	0	1	0	0	0	16901	595	21	3	3264	3	UBR4	1	19433073	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	25176	19433073	229817548	7	14639											
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19501462	19501462	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon21	c.C2839A	p.R947R	CAAGTCGGTTCAA	.	109	5	133	0	.	612	T	19501462	G	T	19501462	2	4	122	1	0	0	0	0	0	0	0	1	16901	1124	39	1		1	UBR4	1	19501462	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	68389	19501462	229749159	8	14640											
ALPL	249	hgsc.bcm.edu;bcgsc.ca	37	1	21902359	21902359	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALPL	NM_000478	exon10	c.G1131T	p.A377A	CACTGCGGACCAT	.	108	5	129	0	.	94	T	21902359	G	T	21902359	2	4	122	1	0	0	0	0	0	0	0	1	547	1103	39	1		1	ALPL	1	21902359	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2400897	21902359	227348262	9	14641											
FUCA1	2517	hgsc.bcm.edu;bcgsc.ca	37	1	24186295	24186295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FUCA1	NM_000147	exon4	c.C761A	p.P254H	TTGACAGGGCTGT	.	73	4	90	0	.	153	T	24186295	G	T	24186295	3	4	122	1	0	0	0	0	1	0	0	0	6094	1000	35	3	659	3	FUCA1	1	24186295	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2283936	24186295	225064326	10	14642											
WDTC1	23038	hgsc.bcm.edu;bcgsc.ca	37	1	27627864	27627864	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDTC1	NM_001276252	exon13	c.A1380G	p.K460K	CTTCAAAGGGAAA	.	74	4	116	0	.	91	G	27627864	A	G	27627864	2	3	122	1	0	0	0	0	0	0	0	1	17339	69	3	2		2	WDTC1	1	27627864	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3441569	27627864	221622757	11	14643											
PTPRF	5792	hgsc.bcm.edu;bcgsc.ca	37	1	44083444	44083444	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRF	NM_002840	exon25	c.C4233A	p.I1411I	CTACATCGATGGC	.	116	6	144	0	.	232	A	44083444	C	A	44083444	2	1	122	1	0	0	0	0	0	0	0	1	12801	874	31	1		1	PTPRF	1	44083444	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	16455580	44083444	205167177	12	14644											
CYP4B1	1580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	47264911	47264911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP4B1	NM_000779	exon1	c.G158A	p.W53X	CCCACTGGCTTTT	.	70	25	137	0	.	92	A	47264911	G	A	47264911	4	1	122	1	0	0	0	0	0	1	0	0	4185	1357	47	3	160	3	CYP4B1	1	47264911	Nonsense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	3181467	47264911	201985710	13	14645											
DIRAS3	9077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512864	68512864	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIRAS3	NM_004675	exon2	c.C117T	p.R39R	CACGACGCGGTAA	.	106	30	147	0	.	848	A	68512864	G	A	68512864	2	1	122	1	0	0	0	0	0	0	0	1	4532	1074	38	1		1	DIRAS3	1	68512864	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	21247953	68512864	180737757	14	14646											
LPAR3	23566	hgsc.bcm.edu;bcgsc.ca	37	1	85331068	85331068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPAR3	NM_012152	exon2	c.G736T	p.G246W	ACCTACCTAAGAC	.	71	4	118	0	.	502	A	85331068	C	A	85331068	3	1	122	1	0	0	0	0	1	0	0	0	8906	695	24	3	333	3	LPAR3	1	85331068	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	16818204	85331068	163919553	15	14647											
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu	37	1	86340972	86340972	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL24A1	NM_152890	exon34	c.A3072G	p.E1024E	ACCTGGTTCACCT	.	108	5	220	0	.	94	C	86340972	T	C	86340972	2	2	122	1	0	0	0	0	0	0	0	1	3683	1722	60	2		2	COL24A1	1	86340972	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1009904	86340972	162909649	16	14648											
KCNA10	3744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111061042	111061042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA10	NM_005549	exon1	c.A368G	p.D123G	ATGGAGTCAAAGA	.	29	5	42	0	.	156	C	111061042	T	C	111061042	3	2	122	1	0	0	0	0	1	0	0	0	8002	1667	58	2	1171	2	KCNA10	1	111061042	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	24720070	111061042	138189579	17	14649											
CHI3L2	1117	hgsc.bcm.edu;bcgsc.ca	37	1	111773369	111773369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHI3L2	NM_004000	exon3	c.G76A	p.A26T	GGATCTGCCTACA	.	60	4	77	0	.	514	A	111773369	G	A	111773369	3	1	122	1	0	0	0	0	1	0	0	0	3341	1319	46	3	86	3	CHI3L2	1	111773369	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	712327	111773369	137477252	18	14650											
HIPK1	204851	hgsc.bcm.edu;bcgsc.ca	37	1	114499248	114499248	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIPK1	NM_152696	exon6	c.1408-1G>T	.	TTGGAAGGTGAAT	.	60	4	95	0	.	361	T	114499248	G	T	114499248	5	4	122	1	0	0	0	0	0	0	1	0	7116	1014	35	3	1443	3	HIPK1	1	114499248	Splice_Site	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2725879	114499248	134751373	19	14651											
SPRR2A	6700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153029108	153029108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPRR2A	NM_005988	exon2	c.C104A	p.P35H	GGGCAGGGCTCAG	.	183	34	183	0	.	69	T	153029108	G	T	153029108	3	4	122	1	0	0	0	0	1	0	0	0	15096	1232	43	3	118	3	SPRR2A	1	153029108	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	38529860	153029108	96221513	20	14652											
FDPS	2224	hgsc.bcm.edu;bcgsc.ca	37	1	155289468	155289468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FDPS	NM_001135821	exon9	c.T913C	p.F305L	GAGTTCTTTCAGA	.	88	4	118	0	.	90	C	155289468	T	C	155289468	3	2	122	1	0	0	0	0	1	0	0	0	5803	1609	56	2	943	2	FDPS	1	155289468	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	2260360	155289468	93961153	21	14653											
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156280946	156280946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCT3	NM_005998	exon12	c.G1196A	p.R399H	ACATTGCGACACA	.	157	23	141	0	.	92	T	156280946	C	T	156280946	3	4	122	1	0	0	0	0	1	0	0	0	2954	768	27	1	453	1	CCT3	1	156280946	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	991478	156280946	92969675	22	14654											
APCS	325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	159558025	159558025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APCS	NM_001639	exon2	c.A199T	p.S67C	GCCTACAGCCTCT	.	178	13	90	0	.	154	T	159558025	A	T	159558025	3	4	122	1	0	0	0	0	1	0	0	0	767	188	7	4	205	4	APCS	1	159558025	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3277079	159558025	89692596	23	14655											
CD48	962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160648872	160648872	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD48	NM_001778	exon4	c.G702A	p.V234V	GGTGGGCACCGTG	.	136	44	134	0	.	90	T	160648872	C	T	160648872	2	4	122	1	0	0	0	0	0	0	0	1	3020	697	25	3		3	CD48	1	160648872	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1090847	160648872	88601749	24	14656											
ADCY10	55811	broad.mit.edu;bcgsc.ca	37	1	167849366	167849366	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCY10	NM_018417	exon11	c.A1203G	p.R401R	CTCGTGTCTCACA	.	136	6	176	1	.	493	C	167849366	T	C	167849366	2	2	122	1	0	0	0	0	0	0	0	1	293	1664	58	2		2	ADCY10	1	167849366	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	7200494	167849366	81401255	25	14657											
FMO3	2328	hgsc.bcm.edu;bcgsc.ca	37	1	171076816	171076816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FMO3	NM_006894	exon4	c.A322G	p.T108A	TCTTAGACATTTG	.	143	6	156	0	.	187	G	171076816	A	G	171076816	3	3	122	1	0	0	0	0	1	0	0	0	5956	289	10	2	332	2	FMO3	1	171076816	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3227450	171076816	78173805	26	14658											
IRF6	3664	hgsc.bcm.edu;bcgsc.ca	37	1	209974642	209974642	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRF6	NM_006147	exon3	c.C117T	p.P39P	TTTCCAGGGAATC	.	79	4	101	0	.	92	A	209974642	G	A	209974642	2	1	122	1	0	0	0	0	0	0	0	1	7834	987	35	3		3	IRF6	1	209974642	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	38897826	209974642	39275979	27	14659											
CNST	163882	hgsc.bcm.edu;bcgsc.ca	37	1	246784775	246784775	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNST	NM_152609	exon3	c.C424T	p.L142L	AAAGTACTAAGCG	.	92	4	68	0	.	90	T	246784775	C	T	246784775	2	4	122	1	0	0	0	0	0	0	0	1	3634	564	20	3		3	CNST	1	246784775	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	36810133	246784775	2465846	28	14660											
C2orf44	80304	hgsc.bcm.edu;bcgsc.ca	37	2	24261602	24261602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf44	NM_025203	exon2	c.G763T	p.G255C	CTTCACCAATAAC	.	112	5	121	0	.	154	A	24261602	C	A	24261602	3	1	122	1	0	0	0	0	1	0	0	0	2168	594	21	3	1414	3	C2orf44	2	24261602	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		24261602	218937771	29	14661											
BIRC6	57448	hgsc.bcm.edu;bcgsc.ca	37	2	32678911	32678911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BIRC6	NM_016252	exon23	c.G4654T	p.G1552C	GCTGAGGGTAGTT	.	152	8	176	0	.	233	T	32678911	G	T	32678911	3	4	122	1	0	0	0	0	1	0	0	0	1438	1232	43	3	4744	3	BIRC6	2	32678911	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	8417309	32678911	210520462	30	14662											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62067708	62067708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM161A	NM_032180	exon3	c.C431T	p.S144L	TTTTCTGATACAG	.	159	76	200	0	.	136	A	62067708	G	A	62067708	3	1	122	1	0	0	0	0	1	0	0	0	5472	1294	45	3	1567	3	FAM161A	2	62067708	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	29388797	62067708	181131665	31	14663											
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62998523	62998523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EHBP1	NM_001142616	exon5	c.A308C	p.E103A	TCATAGAAAATGT	.	145	26	152	0	.	154	C	62998523	A	C	62998523	3	2	122	1	0	0	0	0	1	0	0	0	4975	246	9	5	322	5	EHBP1	2	62998523	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	930815	62998523	180200850	32	14664											
PLEK	5341	hgsc.bcm.edu;bcgsc.ca	37	2	68607861	68607861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEK	NM_002664	exon3	c.T205C	p.F69L	TTTGTGTTTAAGA	.	95	5	111	0	.	91	C	68607861	T	C	68607861	3	2	122	1	0	0	0	0	1	0	0	0	12053	1725	60	2	215	2	PLEK	2	68607861	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	5609338	68607861	174591512	33	14665											
DNAH6	1768	hgsc.bcm.edu;bcgsc.ca	37	2	84955003	84955003	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH6	NM_001370	exon61	c.C10183A	p.R3395R	TTTCTCCGAGGTT	.	91	4	103	0	.	69	A	84955003	C	A	84955003	2	1	122	1	0	0	0	0	0	0	0	1	4605	644	23	1		1	DNAH6	2	84955003	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	16347142	84955003	158244370	34	14666											
USP39	10713	broad.mit.edu;ucsc.edu	37	2	85843340	85843340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP39	NM_001256725	exon1	c.G22A	p.E8K	AAGCGGGAGTCTC	.	68	12	53	2	.	658	A	85843340	G	A	85843340	3	1	122	1	0	0	0	0	1	0	0	0	17067	1175	41	3	24	3	USP39	2	85843340	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	888337	85843340	157356033	35	14667											
GNLY	10578	hgsc.bcm.edu;bcgsc.ca	37	2	85922521	85922521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GNLY	NM_006433	exon2	c.C131T	p.P44L	CCTGCCCGTGCCT	.	84	4	78	0	.	90	T	85922521	C	T	85922521	3	4	122	1	0	0	0	0	1	0	0	0	6539	652	23	1	148	1	GNLY	2	85922521	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	79181	85922521	157276852	36	14668											
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95756225	95756225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS5	NM_031902	exon11	c.G974A	p.R325Q	ATGAGCCGGCAGA	.	87	24	122	0	.	92	T	95756225	C	T	95756225	3	4	122	1	0	0	0	0	1	0	0	0	9846	652	23	1	326	1	MRPS5	2	95756225	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	9833704	95756225	147443148	37	14669											
PROM2	150696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95950732	95950732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PROM2	NM_001165977	exon15	c.C1744T	p.R582W	AAGCTACGGCAGG	.	136	46	199	1	.	91	T	95950732	C	T	95950732	3	4	122	1	0	0	0	0	1	0	0	0	12556	527	19	1	1802	1	PROM2	2	95950732	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	194507	95950732	147248641	38	14670											
LYG2	254773	hgsc.bcm.edu;bcgsc.ca	37	2	99870712	99870712	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LYG2	NM_175735	exon2	c.C12A	p.S4S	CACCACGGAGGAT	.	57	5	73	0	.	91	T	99870712	G	T	99870712	2	4	122	1	0	0	0	0	0	0	0	1	9105	1103	39	1		1	LYG2	2	99870712	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	3919980	99870712	143328661	39	14671											
AFF3	3899	hgsc.bcm.edu;bcgsc.ca	37	2	100185316	100185316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AFF3	NM_001025108	exon18	c.A3055G	p.M1019V	TCACCATTGCATC	.	121	6	125	0	.	230	C	100185316	T	C	100185316	3	2	122	1	0	0	0	0	1	0	0	0	358	1493	52	2	728	2	AFF3	2	100185316	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	314604	100185316	143014057	40	14672											
IL1R1	3554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102791944	102791944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL1R1	NM_000877	exon10	c.A1142G	p.D381G	CTTCAGATGGAAA	.	557	109	555	0	.	523	G	102791944	A	G	102791944	3	3	122	1	0	0	0	0	1	0	0	0	7658	333	12	2	1176	2	IL1R1	2	102791944	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	2606628	102791944	140407429	41	14673											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141773444	141773444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon13	c.G2011T	p.D671Y	CGCTGTCATCTAT	.	238	72	322	0	.	311	A	141773444	C	A	141773444	3	1	122	1	0	0	0	0	1	0	0	0	8955	826	29	3	12104	3	LRP1B	2	141773444	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	38981500	141773444	101425929	42	14674											
LRP1B	53353	hgsc.bcm.edu;bcgsc.ca	37	2	141777526	141777526	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon12	c.T1935C	p.S645S	GGGATGAGACATT	.	84	5	100	0	.	311	G	141777526	A	G	141777526	2	3	122	1	0	0	0	0	0	0	0	1	8955	291	11	2		2	LRP1B	2	141777526	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	4082	141777526	101421847	43	14675											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170044602	170044602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP2	NM_004525	exon49	c.A9206T	p.H3069L	GGGGTGTGGCACA	.	196	49	318	0	.	175	A	170044602	T	A	170044602	3	1	122	1	0	0	0	0	1	0	0	0	8956	1696	59	4	4885	4	LRP2	2	170044602	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	28267076	170044602	73154771	44	14676											
EVX2	344191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176948256	176948256	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EVX2	NM_001080458	exon1	c.C249T	p.G83G	TTCGCTGCCCGTG	.	259	52	226	1	.	70	A	176948256	G	A	176948256	2	1	122	1	0	0	0	0	0	0	0	1	5295	1306	46	3		3	EVX2	2	176948256	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	6903654	176948256	66251117	45	14677											
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179577619	179577619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTN	NM_001267550	exon94	c.A27133G	p.T9045A	GAGGTGTTCCTTT	.	84	4	59	0	.	636	C	179577619	T	C	179577619	3	2	122	1	0	0	0	0	1	0	0	0	16732	1725	60	2	77472	2	TTN	2	179577619	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	2629363	179577619	63621754	46	14678											
GPR1	2825	hgsc.bcm.edu;bcgsc.ca	37	2	207041152	207041152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR1	NM_001098199	exon3	c.C820A	p.H274N	TATTGTGGTGAAT	.	83	4	127	0	.	90	T	207041152	G	T	207041152	3	4	122	1	0	0	0	0	1	0	0	0	6621	1348	47	3	251	3	GPR1	2	207041152	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	27463533	207041152	36158221	47	14679											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219222293	219222293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf62	NM_198559	exon3	c.C155T	p.T52M	CTGAGACGCTGGC	.	109	13	111	0	.	68	T	219222293	C	T	219222293	3	4	122	1	0	0	0	0	1	0	0	0	2181	536	19	1	165	1	C2orf62	2	219222293	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	12181141	219222293	23977080	48	14680											
GMPPA	29926	hgsc.bcm.edu;bcgsc.ca	37	2	220366718	220366718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GMPPA	NM_205847	exon5	c.C388T	p.H130Y	GAAGCCCACCGAC	.	65	6	115	0	.	90	T	220366718	C	T	220366718	3	4	122	1	0	0	0	0	1	0	0	0	6494	594	21	3	402	3	GMPPA	2	220366718	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1144425	220366718	22832655	49	14681											
AGXT	189	hgsc.bcm.edu;bcgsc.ca	37	2	241813425	241813425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGXT	NM_000030	exon6	c.A626G	p.K209R	CCCAGAAGGCCCT	.	52	4	74	0	.	90	G	241813425	A	G	241813425	3	3	122	1	0	0	0	0	1	0	0	0	404	72	3	2	648	2	AGXT	2	241813425	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	21446707	241813425	1385948	50	14682											
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14548375	14548375	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIP2	.	.	.	.	CACTGGGCACAGC	.	77	28	124	1	.	69	A	14548375	G	A	14548375	1	1	122	0	1	0	0	0	0	0	0	0	6788	1203	42	3		3	GRIP2	3	14548375	RNA	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10		14548375	183474055	51	14683											
TBC1D5	9779	hgsc.bcm.edu;bcgsc.ca	37	3	17333464	17333464	+	Missense_Mutation	SNP	C	C	A	rs143029277	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D5	NM_014744	exon15	c.G1168T	p.G390C	GAAGGCCGAGACA	.	72	4	103	0	C|1.000;T|0.000	91	A	17333464	C	A	17333464	3	1	122	1	0	0	0	0	1	0	0	0	15620	652	23	1	1321	1	TBC1D5	3	17333464	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2785089	17333464	180688966	52	14684											
SATB1	6304	hgsc.bcm.edu;bcgsc.ca	37	3	18393620	18393620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SATB1	NM_002971	exon10	c.A1643G	p.N548S	GAGAGGTTCTCCC	.	146	6	220	0	.	228	C	18393620	T	C	18393620	3	2	122	1	0	0	0	0	1	0	0	0	13853	1725	60	2	656	2	SATB1	3	18393620	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1060156	18393620	179628810	53	14685											
KAT2B	8850	hgsc.bcm.edu;bcgsc.ca	37	3	20153102	20153102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KAT2B	NM_003884	exon6	c.G866A	p.C289Y	GTTACTGCAACGT	.	73	4	86	0	.	228	A	20153102	G	A	20153102	3	1	122	1	0	0	0	0	1	0	0	0	7982	1319	46	3	888	3	KAT2B	3	20153102	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1759482	20153102	177869328	54	14686											
VILL	50853	hgsc.bcm.edu;bcgsc.ca	37	3	38044030	38044030	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VILL	NM_015873	exon13	c.G1623T	p.L541L	CTTGCTGGTCACA	.	119	7	87	0	.	90	T	38044030	G	T	38044030	2	4	122	1	0	0	0	0	0	0	0	1	17162	1335	47	3		3	VILL	3	38044030	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	17890928	38044030	159978400	55	14687											
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39184971	39184971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon5	c.T1345C	p.F449L	ATGTGAAGCTACA	.	88	5	124	0	.	230	G	39184971	A	G	39184971	3	3	122	1	0	0	0	0	1	0	0	0	3963	72	3	2	428	2	CSRNP1	3	39184971	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1140941	39184971	158837459	56	14688											
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39185786	39185786	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon4	c.C622A	p.R208R	GAGCTCGACGTCG	.	90	6	146	0	.	230	T	39185786	G	T	39185786	2	4	122	1	0	0	0	0	0	0	0	1	3963	1066	37	1		1	CSRNP1	3	39185786	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	815	39185786	158836644	57	14689											
XIRP1	165904	hgsc.bcm.edu;bcgsc.ca	37	3	39229162	39229162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XIRP1	NM_001198621	exon2	c.A1775G	p.Q592R	ATGGTCTGCACAT	.	134	8	189	0	.	158	C	39229162	T	C	39229162	3	2	122	1	0	0	0	0	1	0	0	0	17426	1580	55	2	3760	2	XIRP1	3	39229162	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	43376	39229162	158793268	58	14690											
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266882	41266882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon5	c.A553G	p.R185G	GCTTCCAGACACG	.	148	45	212	1	.	24361	G	41266882	A	G	41266882	3	3	122	1	0	0	0	0	1	0	0	0	4016	180	7	2	567	2	CTNNB1	3	41266882	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	2037720	41266882	156755548	59	14691											
CTNNB1	1499	hgsc.bcm.edu;bcgsc.ca	37	3	41275034	41275034	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon9	c.T1200C	p.G400G	GGAAGGTCTCCTT	.	97	5	107	0	.	24361	C	41275034	T	C	41275034	2	2	122	1	0	0	0	0	0	0	0	1	4016	1654	58	2		2	CTNNB1	3	41275034	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	8152	41275034	156747396	60	14692											
ANO10	55129	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	43621859	43621859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO10	NM_018075	exon5	c.A578G	p.K193R	TGATACTTCAAAG	.	30	4	38	0	.	92	C	43621859	T	C	43621859	3	2	122	1	0	0	0	0	1	0	0	0	696	1609	56	2	1440	2	ANO10	3	43621859	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	2346825	43621859	154400571	61	14693											
CCR9	10803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45942794	45942794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCR9	NM_031200	exon3	c.A514G	p.I172V	TTTACCATCTGGG	.	72	20	106	0	.	660	G	45942794	A	G	45942794	3	3	122	1	0	0	0	0	1	0	0	0	2948	217	8	2	520	2	CCR9	3	45942794	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	2320935	45942794	152079636	62	14694											
NBEAL2	23218	hgsc.bcm.edu;bcgsc.ca	37	3	47046023	47046023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEAL2	NM_015175	exon38	c.G6237T	p.L2079F	GTACTTGATGCAA	.	74	4	139	0	.	69	T	47046023	G	T	47046023	3	4	122	1	0	0	0	0	1	0	0	0	10189	1281	45	3	6387	3	NBEAL2	3	47046023	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1103229	47046023	150976407	63	14695											
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48669737	48669737	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A6	NM_022911	exon5	c.A526T	p.R176X	CATCTCTGGCTGT	.	262	109	340	0	.	946	A	48669737	T	A	48669737	4	1	122	1	0	0	0	0	0	1	0	0	14521	1588	55	4	1857	4	SLC26A6	3	48669737	Nonsense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1623714	48669737	149352693	64	14696											
STX19	415117	hgsc.bcm.edu;bcgsc.ca	37	3	93733245	93733245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STX19	NM_001001850	exon2	c.G869A	p.C290Y	CTACAGCATGGAC	.	84	5	99	0	.	90	T	93733245	C	T	93733245	3	4	122	1	0	0	0	0	1	0	0	0	15341	710	25	3	19	3	STX19	3	93733245	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	45063508	93733245	104289185	65	14697											
PHLDB2	90102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111604197	111604197	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHLDB2	NM_001134437	exon3	c.C1354T	p.L452L	GATGACCTGATGG	.	66	18	73	1	.	96	T	111604197	C	T	111604197	2	4	122	1	0	0	0	0	0	0	0	1	11852	680	24	3		3	PHLDB2	3	111604197	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	17870952	111604197	86418233	66	14698											
BOC	91653	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	112987288	112987288	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BOC	NM_033254	exon5	c.C519T	p.S173S	GGCCTCCAGAGGT	.	68	16	65	0	.	157	T	112987288	C	T	112987288	2	4	122	1	0	0	0	0	0	0	0	1	1481	581	21	3		3	BOC	3	112987288	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1383091	112987288	85035142	67	14699											
POPDC2	64091	hgsc.bcm.edu;bcgsc.ca	37	3	119378819	119378819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POPDC2	NM_022135	exon1	c.A452G	p.E151G	GGTGTCTCACCCT	.	76	5	96	0	.	90	C	119378819	T	C	119378819	3	2	122	1	0	0	0	0	1	0	0	0	12255	1551	54	2	658	2	POPDC2	3	119378819	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	6391531	119378819	78643611	68	14700											
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419215	122419215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARP14	NM_017554	exon6	c.A1814G	p.N605S	TTGAGAACAAAGA	.	79	4	92	0	.	525	G	122419215	A	G	122419215	3	3	122	1	0	0	0	0	1	0	0	0	11458	43	2	2	1836	2	PARP14	3	122419215	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3040396	122419215	75603215	69	14701											
IFT122	55764	hgsc.bcm.edu;bcgsc.ca	37	3	129238004	129238004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT122	NM_052985	exon29	c.C3599A	p.P1200Q	AGGACCCGTTCAC	.	93	5	145	0	.	92	A	129238004	C	A	129238004	3	1	122	1	0	0	0	0	1	0	0	0	7555	652	23	1	3716	1	IFT122	3	129238004	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6818789	129238004	68784426	70	14702											
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134264444	134264444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP63	NM_001042383	exon7	c.G572T	p.R191L	TCAATCGGAAACA	.	78	4	105	0	.	493	T	134264444	G	T	134264444	3	4	122	1	0	0	0	0	1	0	0	0	3257	1116	39	1	594	1	CEP63	3	134264444	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5026440	134264444	63757986	71	14703											
CLSTN2	64084	hgsc.bcm.edu;bcgsc.ca	37	3	140251313	140251313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLSTN2	NM_022131	exon9	c.G1492T	p.G498C	ACAGTCGGCGCTT	.	91	5	122	0	.	157	T	140251313	G	T	140251313	3	4	122	1	0	0	0	0	1	0	0	0	3562	1116	39	1	1526	1	CLSTN2	3	140251313	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5986869	140251313	57771117	72	14704											
EIF2A	83939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150285799	150285799	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF2A	NM_032025	exon8	c.G660A	p.K220K	CTTTAAGGCAGAT	.	61	19	60	0	.	22	A	150285799	G	A	150285799	2	1	122	1	0	0	0	0	0	0	0	1	4995	991	35	3		3	EIF2A	3	150285799	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	10034486	150285799	47736631	73	14705											
KCNAB1	7881	hgsc.bcm.edu;bcgsc.ca	37	3	155838515	155838515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNAB1	NM_172160	exon1	c.T115C	p.S39P	AAAGCCTCAGAAA	.	137	6	197	0	.	94	C	155838515	T	C	155838515	3	2	122	1	0	0	0	0	1	0	0	0	8009	1551	54	2	117	2	KCNAB1	3	155838515	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	5552716	155838515	42183915	74	14706											
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160155954	160155954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM59	NM_173084	exon3	c.G1018C	p.V340L	GTATTACTGAAAT	.	271	85	299	0	.	658	G	160155954	C	G	160155954	3	3	122	1	0	0	0	0	1	0	0	0	16529	565	20	4	197	4	TRIM59	3	160155954	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	4317439	160155954	37866476	75	14707											
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172835323	172835323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA16	NM_031955	exon2	c.A199G	p.K67E	TGCCCTTTGTCAT	.	1219	190	696	0	.	94	C	172835323	T	C	172835323	3	2	122	1	0	0	0	0	1	0	0	0	15000	1850	64	2	1550	2	SPATA16	3	172835323	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	12679369	172835323	25187107	76	14708											
SENP2	59343	hgsc.bcm.edu;bcgsc.ca	37	3	185316214	185316214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP2	NM_021627	exon3	c.C172A	p.Q58K	ATTCACCAAGTGA	.	175	7	186	0	.	658	A	185316214	C	A	185316214	3	1	122	1	0	0	0	0	1	0	0	0	14047	595	21	3	182	3	SENP2	3	185316214	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	12480891	185316214	12706216	77	14709											
LPP	4026	hgsc.bcm.edu;bcgsc.ca	37	3	188592145	188592145	+	Missense_Mutation	SNP	G	G	T	rs9830664	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPP	NM_005578	exon11	c.G1717T	p.G573C	GATTGCGGTGGTC	.	79	4	67	0	G|0.998;A|0.002	659	T	188592145	G	T	188592145	3	4	122	1	0	0	0	0	1	0	0	0	8923	1116	39	1	1751	1	LPP	3	188592145	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	3275931	188592145	9430285	78	14710											
HTT	3064	hgsc.bcm.edu;bcgsc.ca	37	4	3131704	3131704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon13	c.G1797T	p.Q599H	GCCCCAGGATGAA	.	99	6	100	0	.	281	T	3131704	G	T	3131704	3	4	122	1	0	0	0	0	1	0	0	0	7457	991	35	3	1847	3	HTT	4	3131704	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10		3131704	188022572	79	14711											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3225849	3225849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon56	c.G7756T	p.A2586S	TCTCCGGCTACTA	.	98	35	98	0	.	281	T	3225849	G	T	3225849	3	4	122	1	0	0	0	0	1	0	0	0	7457	1203	42	3	7978	3	HTT	4	3225849	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	94145	3225849	187928427	80	14712											
HGFAC	3083	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	3443800	3443800	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HGFAC	NM_001528	exon1	c.G72C	p.L24L	CCTCCTGCTGCTG	.	22	4	27	0	.	514	C	3443800	G	C	3443800	2	2	122	1	0	0	0	0	0	0	0	1	7086	1306	46	4		4	HGFAC	4	3443800	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	217951	3443800	187710476	81	14713											
ANKRD17	26057	hgsc.bcm.edu;bcgsc.ca	37	4	74005966	74005966	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD17	NM_032217	exon15	c.A2367G	p.P789P	GTTTGCTGGCAAA	.	84	4	89	0	.	234	C	74005966	T	C	74005966	2	2	122	1	0	0	0	0	0	0	0	1	646	1567	55	2		2	ANKRD17	4	74005966	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	70562166	74005966	117148310	82	14714											
G3BP2	9908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	76573877	76573877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	G3BP2	NM_012297	exon9	c.C874T	p.R292C	GTTCACGCACACG	.	35	4	34	0	.	153	A	76573877	G	A	76573877	3	1	122	1	0	0	0	0	1	0	0	0	6142	1087	38	1	590	1	G3BP2	4	76573877	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2567911	76573877	114580399	83	14715											
STBD1	8987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77230621	77230621	+	Missense_Mutation	SNP	G	G	T	rs147970715	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STBD1	NM_003943	exon2	c.G545T	p.R182I	AGAACAGAGCTAA	.	128	34	150	1	G|0.999;A|0.001	69	T	77230621	G	T	77230621	3	4	122	1	0	0	0	0	1	0	0	0	15273	942	33	3	551	3	STBD1	4	77230621	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	656744	77230621	113923655	84	14716											
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106155605	106155605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TET2	NM_001127208	exon3	c.A506T	p.H169L	CAACACATAACTG	.	149	43	220	0	.	4618	T	106155605	A	T	106155605	3	4	122	1	0	0	0	0	1	0	0	0	15767	217	8	4	508	4	TET2	4	106155605	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	28924984	106155605	84998671	85	14717											
ELOVL6	79071	hgsc.bcm.edu;bcgsc.ca	37	4	111119423	111119423	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELOVL6	NM_001130721	exon2	c.C69T	p.I23I	CCATTGGATGGCT	.	78	5	140	0	.	91	A	111119423	G	A	111119423	2	1	122	1	0	0	0	0	0	0	0	1	5078	1164	41	3		3	ELOVL6	4	111119423	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	4963818	111119423	80034853	86	14718											
ANXA5	308	hgsc.bcm.edu;bcgsc.ca	37	4	122607464	122607464	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANXA5	NM_001154	exon3	c.C73A	p.R25R	CCTTCCGAAGAGT	.	80	4	124	0	.	91	T	122607464	G	T	122607464	2	4	122	1	0	0	0	0	0	0	0	1	721	1057	37	1		1	ANXA5	4	122607464	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	11488041	122607464	68546812	87	14719											
GAB1	2549	hgsc.bcm.edu;bcgsc.ca	37	4	144378898	144378898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAB1	NM_207123	exon7	c.G1651T	p.G551C	ACCATAGGTGACT	.	87	4	112	0	.	1146	T	144378898	G	T	144378898	3	4	122	1	0	0	0	0	1	0	0	0	6148	1000	35	3	1677	3	GAB1	4	144378898	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	21771434	144378898	46775378	88	14720											
SH3D19	152503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152060939	152060939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3D19	NM_001009555	exon14	c.G1513A	p.D505N	GGAAATCATGAAG	.	91	21	157	1	.	92	T	152060939	C	T	152060939	3	4	122	1	0	0	0	0	1	0	0	0	14249	826	29	3	891	3	SH3D19	4	152060939	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	7682041	152060939	39093337	89	14721											
GFM2	84340	hgsc.bcm.edu;bcgsc.ca	37	5	74028915	74028915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GFM2	NM_032380	exon16	c.C1519A	p.H507N	ACGCATGTTCCAA	.	84	4	108	0	.	90	T	74028915	G	T	74028915	3	4	122	1	0	0	0	0	1	0	0	0	6342	1377	48	3	844	3	GFM2	5	74028915	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10		74028915	106886345	90	14722											
ALDH7A1	501	ucsc.edu;bcgsc.ca	37	5	125887798	125887798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH7A1	NM_001182	exon14	c.C1232A	p.P411Q	ATTGTCGGTTCTA	.	65	6	90	1	.	227	T	125887798	G	T	125887798	3	4	122	1	0	0	0	0	1	0	0	0	504	1116	39	1	407	1	ALDH7A1	5	125887798	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	51858883	125887798	55027462	91	14723											
ETF1	2107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137844000	137844000	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ETF1	NM_004730	exon11	c.C1308T	p.D436D	CTAGTAGTCATCA	.	124	19	96	0	.	229	A	137844000	G	A	137844000	2	1	122	1	0	0	0	0	0	0	0	1	5268	1020	36	3		3	ETF1	5	137844000	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	11956202	137844000	43071260	92	14724											
PSD2	84249	hgsc.bcm.edu;bcgsc.ca	37	5	139189371	139189371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSD2	NM_032289	exon2	c.C346A	p.P116T	CTCTACCCAGATG	.	113	5	64	0	.	91	A	139189371	C	A	139189371	3	1	122	1	0	0	0	0	1	0	0	0	12647	623	22	3	348	3	PSD2	5	139189371	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1345371	139189371	41725889	93	14725											
PCDHAC2	56134	hgsc.bcm.edu;bcgsc.ca	37	5	140347691	140347691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHAC2	NM_031883	exon1	c.C1340A	p.P447Q	GAATACCGCAGCT	.	87	5	151	0	.	26	A	140347691	C	A	140347691	3	1	122	1	0	0	0	0	1	0	0	0	11533	652	23	1	1342	1	PCDHAC2	5	140347691	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1158320	140347691	40567569	94	14726											
PCDHGA6	56109	hgsc.bcm.edu;bcgsc.ca	37	5	140754660	140754660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA6	NM_018919	exon1	c.T1010C	p.I337T	TAACTATCTTGGA	.	98	6	151	0	.	67	C	140754660	T	C	140754660	3	2	122	1	0	0	0	0	1	0	0	0	11558	1435	50	2	1012	2	PCDHGA6	5	140754660	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	406969	140754660	40160600	95	14727											
PCDHGC5	56097	ucsc.edu;bcgsc.ca	37	5	140871104	140871104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGC5	NM_018929	exon1	c.C2297A	p.P766H	TGCGGCCCACAGA	.	42	4	99	0	.	25	A	140871104	C	A	140871104	3	1	122	1	0	0	0	0	1	0	0	0	11571	623	22	3	2299	3	PCDHGC5	5	140871104	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	116444	140871104	40044156	96	14728											
PDE6A	5145	hgsc.bcm.edu;bcgsc.ca	37	5	149278051	149278051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE6A	NM_000440	exon10	c.G1282T	p.G428C	ACCAGCCCAGAAA	.	57	4	52	0	.	92	A	149278051	C	A	149278051	3	1	122	1	0	0	0	0	1	0	0	0	11645	623	22	3	1352	3	PDE6A	5	149278051	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	8406947	149278051	31637209	97	14729											
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161300201	161300201	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRA1	NM_001127643	exon6	c.C334A	p.R112R	GTCCTCCGGTTAA	.	133	42	167	0	.	93	A	161300201	C	A	161300201	2	1	122	1	0	0	0	0	0	0	0	1	6160	643	23	1		1	GABRA1	5	161300201	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	12022150	161300201	19615059	98	14730											
ZNF346	23567	hgsc.bcm.edu;bcgsc.ca	37	5	176477805	176477805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF346	NM_012279	exon5	c.C571T	p.H191Y	CTCTGCCATGCAA	.	71	4	129	0	.	90	T	176477805	C	T	176477805	3	4	122	1	0	0	0	0	1	0	0	0	17857	594	21	3	589	3	ZNF346	5	176477805	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	15177604	176477805	4437455	99	14731											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176722236	176722236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.A7867C	p.S2623R	GAGCAAAGTCCCT	.	110	39	151	0	.	188	C	176722236	A	C	176722236	3	2	122	1	0	0	0	0	1	0	0	0	10669	72	3	5	7953	5	NSD1	5	176722236	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	244431	176722236	4193024	100	14732											
NSD1	64324	hgsc.bcm.edu;bcgsc.ca	37	5	176722361	176722361	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.T7992C	p.S2664S	CTGGTCTCTTGGA	.	96	5	139	0	.	188	C	176722361	T	C	176722361	2	2	122	1	0	0	0	0	0	0	0	1	10669	1538	54	2		2	NSD1	5	176722361	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	125	176722361	4192899	101	14733											
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178506014	178506014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF354C	NM_014594	exon5	c.G581T	p.G194V	CATTTGGGAAAGA	.	70	5	71	0	.	91	T	178506014	G	T	178506014	3	4	122	1	0	0	0	0	1	0	0	0	17863	1232	43	3	595	3	ZNF354C	5	178506014	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1783653	178506014	2409246	102	14734											
MGAT1	4245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180219412	180219412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MGAT1,NS,carcinoma,-1	MGAT1	NM_001114617	exon3	c.G560T	p.R187L	TAGTGGCGCGCGA	.	91	30	110	0	.	91	A	180219412	C	A	180219412	3	1	122	1	0	0	0	0	1	0	0	0	9542	768	27	1	781	1	MGAT1	5	180219412	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1713398	180219412	695848	103	14735											
SLC22A23	63027	hgsc.bcm.edu;bcgsc.ca	37	6	3416016	3416016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A23	NM_015482	exon2	c.G728A	p.G243D	AGGTAGCCAAAGA	.	104	5	174	0	.	23	T	3416016	C	T	3416016	3	4	122	1	0	0	0	0	1	0	0	0	14452	739	26	3	1368	3	SLC22A23	6	3416016	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		3416016	167699051	104	14736											
ATP6V1G2	534	hgsc.bcm.edu;bcgsc.ca	37	6	31513188	31513188	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP6V1G2	NM_130463	exon3	c.C354A	p.A118A	GCCCTAGGCAGAA	.	58	4	56	0	.	90	T	31513188	G	T	31513188	2	4	122	1	0	0	0	0	0	0	0	1	1187	987	35	3		3	ATP6V1G2	6	31513188	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	28097172	31513188	139601879	105	14737											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32038106	32038106	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNXB	NM_019105	exon14	c.C5076A	p.L1692L	CCAGGAGAGGCGC	.	166	31	187	0	.	90	T	32038106	G	T	32038106	2	4	122	1	0	0	0	0	0	0	0	1	16343	929	33	3		3	TNXB	6	32038106	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	524918	32038106	139076961	106	14738											
FKBP5	2289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35604882	35604882	+	Silent	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FKBP5	NM_001145775	exon4	c.T159G	p.V53V	GACATAAACTTTG	.	117	40	204	0	.	227	C	35604882	A	C	35604882	2	2	122	1	0	0	0	0	0	0	0	1	5911	1	1	5		5	FKBP5	6	35604882	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3566776	35604882	135510185	107	14739											
DST	667	hgsc.bcm.edu;bcgsc.ca	37	6	56350122	56350122	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon69	c.C13326A	p.I4442I	ATTATCGATCAGA	.	106	5	150	0	.	523	T	56350122	G	T	56350122	2	4	122	1	0	0	0	0	0	0	0	1	4783	1048	37	1		1	DST	6	56350122	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	20745240	56350122	114764945	108	14740											
DST	667	hgsc.bcm.edu;bcgsc.ca	37	6	56365936	56365936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon61	c.A11969G	p.E3990G	TTCTGCTCACTTA	.	77	5	103	0	.	523	C	56365936	T	C	56365936	3	2	122	1	0	0	0	0	1	0	0	0	4783	1551	54	2	3642	2	DST	6	56365936	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	15814	56365936	114749131	109	14741											
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75970580	75970580	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM30A	NM_018247	exon4	c.A501G	p.P167P	AGCAATTGGTTTG	.	189	69	263	0	.	90	C	75970580	T	C	75970580	2	2	122	1	0	0	0	0	0	0	0	1	16150	1799	63	2		2	TMEM30A	6	75970580	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	19604644	75970580	95144487	110	14742											
MYO6	4646	hgsc.bcm.edu;bcgsc.ca	37	6	76542624	76542624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO6	NM_004999	exon6	c.T457A	p.S153T	GGAGAATCAGGAG	.	84	4	109	0	.	92	A	76542624	T	A	76542624	3	1	122	1	0	0	0	0	1	0	0	0	10081	1435	50	4	475	4	MYO6	6	76542624	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	572044	76542624	94572443	111	14743											
SNAP91	9892	hgsc.bcm.edu;bcgsc.ca	37	6	84300973	84300973	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNAP91	NM_001242792	exon21	c.T1971C	p.S657S	AGCCTGAGATGCA	.	44	4	87	0	.	23	G	84300973	A	G	84300973	2	3	122	1	0	0	0	0	0	0	0	1	14833	291	11	2		2	SNAP91	6	84300973	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	7758349	84300973	86814094	112	14744											
WASF1	8936	hgsc.bcm.edu;bcgsc.ca	37	6	110426738	110426738	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WASF1	NM_001024935	exon7	c.A585G	p.R195R	AGGTGCTCTTGGC	.	95	4	103	0	.	90	C	110426738	T	C	110426738	2	2	122	1	0	0	0	0	0	0	0	1	17249	1548	54	2		2	WASF1	6	110426738	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	26125765	110426738	60688329	113	14745											
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132068028	132068028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENPP3	NM_005021	exon25	c.A2560G	p.K854E	CAGGATAAAGTGC	.	151	37	217	0	.	95	G	132068028	A	G	132068028	3	3	122	1	0	0	0	0	1	0	0	0	5131	363	13	2	2658	2	ENPP3	6	132068028	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	21641290	132068028	39047039	114	14746											
VNN2	8875	hgsc.bcm.edu;bcgsc.ca	37	6	133071001	133071001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VNN2	NM_004665	exon6	c.T1204C	p.C402R	GTGTGCAGACCTA	.	93	4	115	0	.	90	G	133071001	A	G	133071001	3	3	122	1	0	0	0	0	1	0	0	0	17180	188	7	2	366	2	VNN2	6	133071001	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1002973	133071001	38044066	115	14747											
PLEKHG1	57480	hgsc.bcm.edu;bcgsc.ca	37	6	151152098	151152098	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHG1	NM_001029884	exon16	c.A1851G	p.T617T	CAACACATGCCCT	.	62	4	114	0	.	92	G	151152098	A	G	151152098	2	3	122	1	0	0	0	0	0	0	0	1	12068	204	8	2		2	PLEKHG1	6	151152098	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	18081097	151152098	19962969	116	14748											
ARID1B	57492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	157502170	157502170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARID1B	NM_020732	exon12	c.A3203G	p.E1068G	AGCCAGAGAGAAA	.	38	4	73	0	.	154	G	157502170	A	G	157502170	3	3	122	1	0	0	0	0	1	0	0	0	914	304	11	2	3249	2	ARID1B	6	157502170	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	6350072	157502170	13612897	117	14749											
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca	37	6	160450671	160450671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGF2R	NM_000876	exon7	c.C866A	p.P289Q	TTTGCCCGTCGGA	.	125	5	168	0	.	118	A	160450671	C	A	160450671	3	1	122	1	0	0	0	0	1	0	0	0	7576	652	23	1	892	1	IGF2R	6	160450671	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2948501	160450671	10664396	118	14750											
RADIL	55698	hgsc.bcm.edu;bcgsc.ca	37	7	4917718	4917718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RADIL	NM_018059	exon2	c.A53G	p.K18R	TGCCGCTTCAGTT	.	83	4	98	0	.	994	C	4917718	T	C	4917718	3	2	122	1	0	0	0	0	1	0	0	0	12997	1609	56	2	3230	2	RADIL	7	4917718	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10		4917718	154220945	119	14751											
DAGLB	221955	hgsc.bcm.edu;bcgsc.ca	37	7	6474496	6474496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DAGLB	NM_139179	exon4	c.T575C	p.V192A	TCCCACACGCTTG	.	114	6	190	0	.	70	G	6474496	A	G	6474496	3	3	122	1	0	0	0	0	1	0	0	0	4227	159	6	2	1491	2	DAGLB	7	6474496	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1556778	6474496	152664167	120	14752											
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47898327	47898327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon27	c.A4306G	p.K1436E	CCTCCTTCGAGTT	.	77	4	80	0	.	145	C	47898327	T	C	47898327	3	2	122	1	0	0	0	0	1	0	0	0	11964	1792	62	2	4367	2	PKD1L1	7	47898327	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	41423831	47898327	111240336	121	14753											
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47947753	47947753	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon9	c.C1323A	p.A441A	AGACACGGCCTCA	.	75	4	75	0	.	145	T	47947753	G	T	47947753	2	4	122	1	0	0	0	0	0	0	0	1	11964	1103	39	1		1	PKD1L1	7	47947753	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	49426	47947753	111190910	122	14754											
ZNF107	51427	hgsc.bcm.edu;bcgsc.ca	37	7	64166707	64166707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF107	NM_016220	exon7	c.T25C	p.S9P	GTAATGTCTTTTC	.	63	4	78	0	.	69	C	64166707	T	C	64166707	3	2	122	1	0	0	0	0	1	0	0	0	17712	1667	58	2	31	2	ZNF107	7	64166707	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	16218954	64166707	94971956	123	14755											
GUSB	2990	hgsc.bcm.edu;bcgsc.ca	37	7	65435344	65435344	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GUSB	NM_000181	exon9	c.C1401A	p.I467I	GTGAGCGATCACC	.	89	5	82	0	.	90	T	65435344	G	T	65435344	2	4	122	1	0	0	0	0	0	0	0	1	6902	1048	37	1		1	GUSB	7	65435344	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1268637	65435344	93703319	124	14756											
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70880904	70880904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WBSCR17	NM_022479	exon4	c.G619A	p.V207I	GAGTATGTCCACA	.	86	21	154	0	.	96	A	70880904	G	A	70880904	3	1	122	1	0	0	0	0	1	0	0	0	17261	1377	48	3	633	3	WBSCR17	7	70880904	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5445560	70880904	88257759	125	14757											
FGL2	10875	hgsc.bcm.edu;bcgsc.ca	37	7	76828978	76828978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGL2	NM_006682	exon1	c.A133G	p.S45G	CTCTGCTTTCTAG	.	89	4	112	0	.	92	C	76828978	T	C	76828978	3	2	122	1	0	0	0	0	1	0	0	0	5873	1609	56	2	1194	2	FGL2	7	76828978	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	5948074	76828978	82309685	126	14758											
ZNF655	79027	hgsc.bcm.edu;bcgsc.ca	37	7	99169920	99169920	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF655	NM_001085368	exon4	c.G294T	p.S98S	AATTTCGGAAGAA	.	123	5	64	0	.	91	T	99169920	G	T	99169920	2	4	122	1	0	0	0	0	0	0	0	1	18065	1103	39	1		1	ZNF655	7	99169920	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	22340942	99169920	59968743	127	14759											
LAMB4	22798	hgsc.bcm.edu;bcgsc.ca	37	7	107720067	107720067	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMB4	NM_007356	exon15	c.T1866C	p.I622I	AATGGCAATGGTG	.	49	4	74	0	.	140	G	107720067	A	G	107720067	2	3	122	1	0	0	0	0	0	0	0	1	8613	126	5	2		2	LAMB4	7	107720067	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	8550147	107720067	51418596	128	14760											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138554406	138554406	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1549	NM_020910	exon14	c.C4653T	p.D1551D	CAGGTCGTCTACC	.	194	31	161	0	.	369	A	138554406	G	A	138554406	2	1	122	1	0	0	0	0	0	0	0	1	8244	1136	40	1		1	KIAA1549	7	138554406	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	30834339	138554406	20584257	129	14761											
PAXIP1	22976	hgsc.bcm.edu;bcgsc.ca	37	7	154738503	154738503	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAXIP1	NM_007349	exon18	c.A2943G	p.T981T	TCCAGGTGTGATG	.	49	4	44	0	.	228	C	154738503	T	C	154738503	2	2	122	1	0	0	0	0	0	0	0	1	11487	1683	59	2		2	PAXIP1	7	154738503	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	16184097	154738503	4400160	130	14762											
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2967694	2967694	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD1	NM_033225	exon43	c.T6594C	p.D2198D	AATGTAATCGTTG	.	52	4	72	0	.	86	G	2967694	A	G	2967694	2	3	122	1	0	0	0	0	0	0	0	1	3944	98	4	2		2	CSMD1	8	2967694	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10		2967694	143396328	131	14763											
VPS37A	137492	hgsc.bcm.edu;bcgsc.ca	37	8	17126365	17126365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS37A	NM_152415	exon4	c.T316C	p.F106L	TTTCAGTTTACAA	.	79	4	117	0	.	90	C	17126365	T	C	17126365	3	2	122	1	0	0	0	0	1	0	0	0	17202	1739	60	2	330	2	VPS37A	8	17126365	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	14158671	17126365	129237657	132	14764											
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39678655	39678655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM2	NM_001464	exon6	c.A379G	p.I127V	GTTCTATTCCATA	.	99	5	163	0	.	227	C	39678655	T	C	39678655	3	2	122	1	0	0	0	0	1	0	0	0	241	1493	52	2	1888	2	ADAM2	8	39678655	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	22552290	39678655	106685367	133	14765											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765595	61765595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHD7	NM_017780	exon31	c.C6311T	p.A2104V	TTGGTGCTGCTAA	.	220	95	241	1	.	141	T	61765595	C	T	61765595	3	4	122	1	0	0	0	0	1	0	0	0	3330	797	28	3	6429	3	CHD7	8	61765595	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	22086940	61765595	84598427	134	14766											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69104651	69104651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PREX2	NM_024870	exon37	c.G4495A	p.A1499T	GCCTGTGCAAACA	.	68	17	73	0	.	390	A	69104651	G	A	69104651	3	1	122	1	0	0	0	0	1	0	0	0	12477	1319	46	3	4870	3	PREX2	8	69104651	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	7339056	69104651	77259371	135	14767											
KIAA1429	25962	hgsc.bcm.edu;bcgsc.ca	37	8	95531221	95531221	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1429	NM_015496	exon9	c.A2505G	p.E835E	CAAGGCTTCTTTG	.	68	4	64	0	.	92	C	95531221	T	C	95531221	2	2	122	1	0	0	0	0	0	0	0	1	8231	1606	56	2		2	KIAA1429	8	95531221	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	26426570	95531221	50832801	136	14768											
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133153569	133153569	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNQ3	NM_004519	exon10	c.G1272A	p.L424L	GAGACCCAGCTTT	.	105	50	85	0	.	138	T	133153569	C	T	133153569	2	4	122	1	0	0	0	0	0	0	0	1	8084	581	21	3		3	KCNQ3	8	133153569	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	37622348	133153569	13210453	137	14769											
PTK2	5747	hgsc.bcm.edu;bcgsc.ca	37	8	141753415	141753415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTK2	NM_005607	exon20	c.G1715T	p.R572L	ACATTCCGAGCAG	.	91	4	76	0	.	1517	A	141753415	C	A	141753415	3	1	122	1	0	0	0	0	1	0	0	0	12762	652	23	1	1561	1	PTK2	8	141753415	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	8599846	141753415	4610607	138	14770											
BAI1	575	hgsc.bcm.edu;bcgsc.ca	37	8	143603470	143603470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BAI1	NM_001702	exon20	c.G3169A	p.G1057S	TGCCTGGGCTGGG	.	57	4	64	0	.	1129	A	143603470	G	A	143603470	3	1	122	1	0	0	0	0	1	0	0	0	1298	1232	43	3	3247	3	BAI1	8	143603470	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1850055	143603470	2760552	139	14771											
PUF60	22827	hgsc.bcm.edu;bcgsc.ca	37	8	144904074	144904074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_078480	exon3	c.T121C	p.S41P	TGATGGAGTCTGT	.	61	4	61	0	.	.	G	144904074	A	G	144904074	3	3	122	1	0	0	0	0	1	0	0	0	12824	304	11	2	1598	2	PUF60	8	144904074	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1300604	144904074	1459948	140	14772											
SMARCA2	6595	hgsc.bcm.edu;bcgsc.ca	37	9	2056807	2056807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCA2	NM_139045	exon7	c.A1309G	p.K437E	CAGCAGAAGATTG	.	65	4	107	0	.	653	G	2056807	A	G	2056807	3	3	122	1	0	0	0	0	1	0	0	0	14769	247	9	2	1331	2	SMARCA2	9	2056807	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10		2056807	139156624	141	14773											
CNTLN	54875	hgsc.bcm.edu;bcgsc.ca	37	9	17332673	17332673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTLN	NM_017738	exon10	c.A1589G	p.K530R	TACAGAAGCTGAG	.	137	6	244	0	.	91	G	17332673	A	G	17332673	3	3	122	1	0	0	0	0	1	0	0	0	3639	72	3	2	1657	2	CNTLN	9	17332673	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	15275866	17332673	123880758	142	14774											
PGM5	5239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71144546	71144546	+	Missense_Mutation	SNP	C	C	G	rs190312271	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGM5	NM_021965	exon11	c.C1678G	p.R560G	ACTGGCCGGAGGG	.	104	34	140	1	C|0.999;T|0.001	92	G	71144546	C	G	71144546	3	3	122	1	0	0	0	0	1	0	0	0	11801	643	23	4	1720	4	PGM5	9	71144546	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	53811873	71144546	70068885	143	14775											
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87339221	87339221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK2	NM_001018065	exon8	c.C803T	p.A268V	GTGTGGCGGAAAA	.	140	35	188	0	.	1404	T	87339221	C	T	87339221	3	4	122	1	0	0	0	0	1	0	0	0	10707	768	27	1	829	1	NTRK2	9	87339221	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	16194675	87339221	53874210	144	14776											
IKBKAP	8518	hgsc.bcm.edu;bcgsc.ca	37	9	111665171	111665171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKBKAP	NM_003640	exon16	c.T1802C	p.V601A	AACCGAACAGGAA	.	120	6	175	0	.	318	G	111665171	A	G	111665171	3	3	122	1	0	0	0	0	1	0	0	0	7610	43	2	2	2284	2	IKBKAP	9	111665171	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	24325950	111665171	29548260	145	14777											
PALM2-AKAP2	445815	hgsc.bcm.edu;bcgsc.ca	37	9	112899145	112899145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALM2-AKAP2	NM_007203	exon8	c.A1321G	p.R441G	AAAGTGAGGCCTT	.	93	4	130	0	.	475	G	112899145	A	G	112899145	3	3	122	1	0	0	0	0	1	0	0	0	11410	295	11	2	1351	2	PALM2-AKAP2	9	112899145	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1233974	112899145	28314286	146	14778											
FBXW2	26190	hgsc.bcm.edu;bcgsc.ca	37	9	123526947	123526947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXW2	NM_012164	exon8	c.G1255A	p.E419K	ATGCTTCGCCTGC	.	95	5	115	0	.	227	T	123526947	C	T	123526947	3	4	122	1	0	0	0	0	1	0	0	0	5766	893	31	1	113	1	FBXW2	9	123526947	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	10627802	123526947	17686484	147	14779											
PHF19	26147	hgsc.bcm.edu;bcgsc.ca	37	9	123636996	123636996	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHF19	NM_015651	exon2	c.A24G	p.P8P	AGTCCCTGGATCC	.	63	4	58	0	.	136	C	123636996	T	C	123636996	2	2	122	1	0	0	0	0	0	0	0	1	11829	1567	55	2		2	PHF19	9	123636996	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	110049	123636996	17576435	148	14780											
FAM129B	64855	hgsc.bcm.edu;bcgsc.ca	37	9	130272586	130272586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM129B	NM_022833	exon9	c.T1000C	p.C334R	GCACGCACACCTC	.	66	4	108	0	.	68	G	130272586	A	G	130272586	3	3	122	1	0	0	0	0	1	0	0	0	5437	159	6	2	1264	2	FAM129B	9	130272586	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	6635590	130272586	10940845	149	14781											
NUP188	23511	hgsc.bcm.edu;bcgsc.ca	37	9	131765691	131765691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP188	NM_015354	exon38	c.G4392T	p.K1464N	CATGAAGGAGTGG	.	46	4	67	0	.	207	T	131765691	G	T	131765691	3	4	122	1	0	0	0	0	1	0	0	0	10758	991	35	3	4542	3	NUP188	9	131765691	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1493105	131765691	9447740	150	14782											
USP20	10868	hgsc.bcm.edu;bcgsc.ca	37	9	132642472	132642472	+	Missense_Mutation	SNP	C	C	A	rs200854092	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP20	NM_001008563	exon25	c.C2665A	p.R889S	GCCATCCGCCAGA	.	50	4	112	0	C|0.999;T|0.000	658	A	132642472	C	A	132642472	3	1	122	1	0	0	0	0	1	0	0	0	17049	652	23	1	2755	1	USP20	9	132642472	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	876781	132642472	8570959	151	14783											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135779080	135779080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSC1	NM_000368	exon17	c.G2166T	p.K722N	GATCACCTTGCGG	.	82	33	94	0	.	1906	A	135779080	C	A	135779080	3	1	122	1	0	0	0	0	1	0	0	0	16602	680	24	3	1356	3	TSC1	9	135779080	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	3136608	135779080	5434351	152	14784											
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139250846	139250846	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPSM1	NM_001145638	exon13	c.C1665T	p.I555I	CCTCATCGCCAGC	.	65	19	76	0	.	90	T	139250846	C	T	139250846	2	4	122	1	0	0	0	0	0	0	0	1	6734	874	31	1		1	GPSM1	9	139250846	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	3471766	139250846	1962585	153	14785											
SEC16A	9919	hgsc.bcm.edu;bcgsc.ca	37	9	139370230	139370230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_014866	exon3	c.C1838A	p.P613Q	TTTACCGGTTCGA	.	51	4	84	0	.	.	T	139370230	G	T	139370230	3	4	122	1	0	0	0	0	1	0	0	0	13986	1116	39	1	5355	1	SEC16A	9	139370230	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	119384	139370230	1843201	154	14786											
ABCA2	20	ucsc.edu;bcgsc.ca	37	9	139911383	139911383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA2	NM_212533	exon19	c.C2837T	p.A946V	TGCACAGCCTCAA	.	30	4	49	0	.	90	A	139911383	G	A	139911383	3	1	122	1	0	0	0	0	1	0	0	0	32	971	34	3	4687	3	ABCA2	9	139911383	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	541153	139911383	1302048	155	14787											
GRIN1	2902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140036523	140036523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIN1	NM_000832	exon2	c.C317T	p.P106L	CCACCCCTGTCTC	.	191	32	287	0	.	187	T	140036523	C	T	140036523	3	4	122	1	0	0	0	0	1	0	0	0	6778	681	24	3	323	3	GRIN1	9	140036523	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	125140	140036523	1176908	156	14788											
NUDT5	11164	hgsc.bcm.edu;bcgsc.ca	37	10	12219892	12219892	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NUDT5,NS,NS,-1	NUDT5	NM_014142	exon5	c.G189T	p.A63A	GATGACCGCGACA	.	48	4	57	0	.	92	A	12219892	C	A	12219892	2	1	122	1	0	0	0	0	0	0	0	1	10742	639	23	1		1	NUDT5	10	12219892	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		12219892	123314855	157	14789											
ARL5B	221079	hgsc.bcm.edu;bcgsc.ca	37	10	18963040	18963040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARL5B	NM_178815	exon5	c.C467A	p.S156Y	TTCAATCCTGCTG	.	64	4	85	0	.	228	A	18963040	C	A	18963040	3	1	122	1	0	0	0	0	1	0	0	0	940	855	30	3	485	3	ARL5B	10	18963040	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6743148	18963040	116571707	158	14790											
ZNF248	57209	hgsc.bcm.edu;bcgsc.ca	37	10	38126943	38126943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF248	NM_001267606	exon2	c.C112A	p.L38M	TTTCCAGGATCAC	.	96	4	148	0	.	91	T	38126943	G	T	38126943	3	4	122	1	0	0	0	0	1	0	0	0	17790	991	35	3	1639	3	ZNF248	10	38126943	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	19163903	38126943	97407804	159	14791											
ZNF33B	7582	hgsc.bcm.edu;bcgsc.ca	37	10	43088543	43088543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF33B	NM_006955	exon5	c.T1855C	p.C619R	TCTGGCAGAAGGT	.	121	5	129	0	.	90	G	43088543	A	G	43088543	3	3	122	1	0	0	0	0	1	0	0	0	17852	188	7	2	485	2	ZNF33B	10	43088543	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	4961600	43088543	92446204	160	14792											
OGDHL	55753	hgsc.bcm.edu;bcgsc.ca	37	10	50948862	50948862	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OGDHL	NM_018245	exon16	c.T2034C	p.H678H	CTGGTCATGGAGA	.	47	4	67	0	.	69	G	50948862	A	G	50948862	2	3	122	1	0	0	0	0	0	0	0	1	10840	214	8	2		2	OGDHL	10	50948862	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	7860319	50948862	84585885	161	14793											
PRF1	5551	hgsc.bcm.edu;bcgsc.ca	37	10	72357906	72357906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRF1	NM_001083116	exon3	c.G1571T	p.R524M	AAGCACCTGGCAT	.	79	6	88	0	.	578	A	72357906	C	A	72357906	3	1	122	1	0	0	0	0	1	0	0	0	12478	681	24	3	100	3	PRF1	10	72357906	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	21409044	72357906	63176841	162	14794											
SEC24C	9632	hgsc.bcm.edu;bcgsc.ca	37	10	75526220	75526220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEC24C	NM_004922	exon13	c.T1720C	p.S574P	GTTGTGTCTGATG	.	50	4	69	0	.	92	C	75526220	T	C	75526220	3	2	122	1	0	0	0	0	1	0	0	0	13996	1667	58	2	1762	2	SEC24C	10	75526220	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	3168314	75526220	60008527	163	14795											
MAT1A	4143	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82039957	82039957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAT1A	NM_000429	exon5	c.C521A	p.P174H	AGCCAGGGGAGGA	.	70	19	100	0	.	90	T	82039957	G	T	82039957	3	4	122	1	0	0	0	0	1	0	0	0	9329	1232	43	3	686	3	MAT1A	10	82039957	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	6513737	82039957	53494790	164	14796											
IFIT2	3433	hgsc.bcm.edu;bcgsc.ca	37	10	91066851	91066851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFIT2	NM_001547	exon2	c.T1138C	p.F380L	GGCAACTTTCAGC	.	91	4	96	0	.	92	C	91066851	T	C	91066851	3	2	122	1	0	0	0	0	1	0	0	0	7523	1609	56	2	1144	2	IFIT2	10	91066851	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	9026894	91066851	44467896	165	14797											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101567952	101567952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC2	NM_000392	exon13	c.G1781A	p.S594N	CCCTGAGCATGCT	.	115	39	160	0	.	91	A	101567952	G	A	101567952	3	1	122	1	0	0	0	0	1	0	0	0	53	971	34	3	1831	3	ABCC2	10	101567952	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	10501101	101567952	33966795	166	14798											
GPR123	84435	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134910585	134910585	+	Silent	SNP	C	C	T	rs62624493	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR123	NM_001083909	exon3	c.C111T	p.V37V	CTTCGTCACCTAC	.	36	8	35	0	C|0.725;G|0.275	90	T	134910585	C	T	134910585	2	4	122	1	0	0	0	0	0	0	0	1	6637	813	29	3		3	GPR123	10	134910585	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	33342633	134910585	624162	167	14799											
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135087474	135087474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM8	NM_001164489	exon4	c.C287T	p.T96M	TGCTCCGTCACCT	.	62	17	101	0	.	90	A	135087474	G	A	135087474	3	1	122	1	0	0	0	0	1	0	0	0	252	1145	40	1	2185	1	ADAM8	10	135087474	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	176889	135087474	447273	168	14800											
OR2AG2	338755	broad.mit.edu;bcgsc.ca	37	11	6789972	6789972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR2AG2	NM_001004490	exon1	c.T217C	p.F73L	ATGTGAACAGGAG	.	119	6	183	1	.	71	G	6789972	A	G	6789972	3	3	122	1	0	0	0	0	1	0	0	0	10985	43	2	2	737	2	OR2AG2	11	6789972	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10		6789972	128216544	169	14801											
OR10A3	26496	hgsc.bcm.edu;bcgsc.ca	37	11	7960614	7960614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10A3	NM_001003745	exon1	c.G454T	p.G152W	TGATCCCTGAGAT	.	129	6	117	0	.	69	A	7960614	C	A	7960614	3	1	122	1	0	0	0	0	1	0	0	0	10891	681	24	3	493	3	OR10A3	11	7960614	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1170642	7960614	127045902	170	14802											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10603489	10603489	+	Missense_Mutation	SNP	G	G	A	rs199557491		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRVI1	NM_130385	exon19	c.C2285T	p.A762V	GTCAGCGCAGGAG	.	76	33	126	0	G|0.999;A|0.001	25	A	10603489	G	A	10603489	3	1	122	1	0	0	0	0	1	0	0	0	9853	1087	38	1	465	1	MRVI1	11	10603489	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2642875	10603489	124403027	171	14803											
DKK3	27122	hgsc.bcm.edu;bcgsc.ca	37	11	11988502	11988502	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DKK3	NM_015881	exon6	c.A672G	p.R224R	CTCACCTCTCTGG	.	129	6	232	0	.	721	C	11988502	T	C	11988502	2	2	122	1	0	0	0	0	0	0	0	1	4546	1565	54	2		2	DKK3	11	11988502	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1385013	11988502	123018014	172	14804											
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	24759781	24759781	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LUZP2	NM_001252010	exon4	c.C266G	p.S89C	TGAAGTCTCTTCA	.	183	55	251	1	.	92	G	24759781	C	G	24759781	3	3	122	1	0	0	0	0	1	0	0	0	9087	913	32	4	280	4	LUZP2	11	24759781	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	12771279	24759781	110246735	173	14805											
C11orf94	143678	hgsc.bcm.edu;bcgsc.ca	37	11	45928125	45928125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080446	exon3	c.C292A	p.L98I	GTCATAGGTGTGC	.	82	4	87	0	.	.	T	45928125	G	T	45928125	3	4	122	1	0	0	0	0	1	0	0	0	1673	991	35	3	8	3	C11orf94	11	45928125	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	21168344	45928125	89078391	174	14806											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46896443	46896443	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP4	NM_002334	exon28	c.C4137A	p.V1379V	AACAGGGACATGC	.	114	31	134	0	.	94	T	46896443	G	T	46896443	2	4	122	1	0	0	0	0	0	0	0	1	8959	1161	41	3		3	LRP4	11	46896443	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	968318	46896443	88110073	175	14807											
P2RX3	5024	hgsc.bcm.edu;bcgsc.ca	37	11	57115686	57115686	+	Missense_Mutation	SNP	G	G	T	rs115850675	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RX3	NM_002559	exon5	c.G434T	p.R145L	TGCTCCGGACCTG	.	68	5	57	0	G|0.996;A|0.004	68	T	57115686	G	T	57115686	3	4	122	1	0	0	0	0	1	0	0	0	11341	1116	39	1	452	1	P2RX3	11	57115686	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	10219243	57115686	77890830	176	14808											
MS4A13	503497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60292725	60292725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MS4A13	NM_001012417	exon5	c.A232T	p.I78F	ACTACAATTACTG	.	373	126	408	0	.	90	T	60292725	A	T	60292725	3	4	122	1	0	0	0	0	1	0	0	0	9857	101	4	4	242	4	MS4A13	11	60292725	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3177039	60292725	74713791	177	14809											
FLRT1	23769	hgsc.bcm.edu;bcgsc.ca	37	11	63884020	63884020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLRT1	NM_013280	exon2	c.A281G	p.N94S	AGATCAACAACGC	.	61	5	65	0	.	90	G	63884020	A	G	63884020	3	3	122	1	0	0	0	0	1	0	0	0	5938	43	2	2	283	2	FLRT1	11	63884020	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3591295	63884020	71122496	178	14810											
KLC2	64837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66031564	66031564	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLC2	NM_022822	exon8	c.G990T	p.L330L	CAACCTGGCCCTG	.	142	18	118	0	.	90	T	66031564	G	T	66031564	2	4	122	1	0	0	0	0	0	0	0	1	8334	1335	47	3		3	KLC2	11	66031564	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2147544	66031564	68974952	179	14811											
BBS1	582	hgsc.bcm.edu;bcgsc.ca	37	11	66283057	66283057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BBS1	NM_024649	exon5	c.G479T	p.R160L	GCATCCGGTGAGA	.	195	8	132	0	.	91	T	66283057	G	T	66283057	3	4	122	1	0	0	0	0	1	0	0	0	1335	1130	39	1	497	1	BBS1	11	66283057	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	251493	66283057	68723459	180	14812											
RBM14	10432	hgsc.bcm.edu;bcgsc.ca	37	11	66392968	66392968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM14	NM_006328	exon2	c.C1621A	p.R541S	TCCTACCGCGGCC	.	126	6	88	0	.	92	A	66392968	C	A	66392968	3	1	122	1	0	0	0	0	1	0	0	0	13115	652	23	1	1627	1	RBM14	11	66392968	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	109911	66392968	68613548	181	14813											
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67818045	67818045	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCIRG1	NM_006019	exon19	c.C2328A	p.I776I	CCCCATCTTTGCC	.	386	167	433	1	.	227	A	67818045	C	A	67818045	2	1	122	1	0	0	0	0	0	0	0	1	15700	903	32	3		3	TCIRG1	11	67818045	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1425077	67818045	67188471	182	14814											
SHANK2	22941	hgsc.bcm.edu;bcgsc.ca	37	11	70332784	70332784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHANK2	NM_133266	exon10	c.T1850C	p.L617P	CCTGTGAGTGGGT	.	101	5	87	0	.	94	G	70332784	A	G	70332784	3	3	122	1	0	0	0	0	1	0	0	0	14265	304	11	2	1943	2	SHANK2	11	70332784	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	2514739	70332784	64673732	183	14815											
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92533159	92533159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon9	c.T6980C	p.V2327A	AGATTGTCCAGGA	.	56	23	78	1	.	73	C	92533159	T	C	92533159	3	2	122	1	0	0	0	0	1	0	0	0	5691	1667	58	2	7014	2	FAT3	11	92533159	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	22200375	92533159	42473357	184	14816											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616016	92616016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon23	c.T12394C	p.Y4132H	GGCCAGTACTGCG	.	76	22	130	0	.	73	C	92616016	T	C	92616016	3	2	122	1	0	0	0	0	1	0	0	0	5691	1638	57	2	12484	2	FAT3	11	92616016	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	82857	92616016	42390500	185	14817											
KBTBD3	143879	hgsc.bcm.edu;bcgsc.ca	37	11	105924774	105924774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KBTBD3	NM_152433	exon3	c.G642A	p.M214I	CAGTACCATTTCT	.	92	4	88	0	.	91	T	105924774	C	T	105924774	3	4	122	1	0	0	0	0	1	0	0	0	7994	594	21	3	1200	3	KBTBD3	11	105924774	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	13308758	105924774	29081742	186	14818											
C11orf88	399949	hgsc.bcm.edu;bcgsc.ca	37	11	111385715	111385715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf88	NM_001100388	exon1	c.C206A	p.P69H	CGCGGCCCAGGAG	.	65	5	74	0	.	226	A	111385715	C	A	111385715	3	1	122	1	0	0	0	0	1	0	0	0	1670	623	22	3	208	3	C11orf88	11	111385715	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	5460941	111385715	23620801	187	14819											
PTS	5805	hgsc.bcm.edu;bcgsc.ca	37	11	112104184	112104184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTS	NM_000317	exon6	c.G344T	p.W115L	ATATCTGGGACAA	.	93	5	114	0	.	90	T	112104184	G	T	112104184	3	4	122	1	0	0	0	0	1	0	0	0	12818	1357	47	3	366	3	PTS	11	112104184	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	718469	112104184	22902332	188	14820											
CADM1	23705	hgsc.bcm.edu;bcgsc.ca	37	11	115109361	115109361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CADM1	NM_014333	exon3	c.A283G	p.S95G	ACCTGCTGTCCTT	.	86	4	129	0	.	92	C	115109361	T	C	115109361	3	2	122	1	0	0	0	0	1	0	0	0	2566	1580	55	2	1077	2	CADM1	11	115109361	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	3005177	115109361	19897155	189	14821											
SIK3	23387	hgsc.bcm.edu;bcgsc.ca	37	11	116746722	116746722	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SIK3	NM_025164	exon9	c.T925C	p.L309L	ATCTTAATGACTA	.	76	4	101	0	.	919	G	116746722	A	G	116746722	2	3	122	1	0	0	0	0	0	0	0	1	14319	98	4	2		2	SIK3	11	116746722	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1637361	116746722	18259794	190	14822											
BACE1	23621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117161738	117161739	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BACE1	NM_012104	exon7	c.970_971insG	p.L324fs	CTCCTAGCCAGAA	.	72	21	148	0	.	91	C	117161739	-	C	117161738	7	5	122	1	0	1	1	0	0	0	0	0	1281	962	34	0	547	0	BACE1	11	117161738	Frame_Shift_Ins	INS	-	TCGA-EP-A2KA-01A-11D-A183-10	415016	117161738	17844778	191	14823											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117374691	117374691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DSCAML1	NM_020693	exon11	c.G2408A	p.R803H	TGGATGCGGCCAG	.	134	40	194	0	.	159	T	117374691	C	T	117374691	3	4	122	1	0	0	0	0	1	0	0	0	4769	768	27	1	4025	1	DSCAML1	11	117374691	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	212953	117374691	17631825	192	14824											
MLL	4297	hgsc.bcm.edu;bcgsc.ca	37	11	118377325	118377325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL	NM_001197104	exon27	c.C10718T	p.P3573L	ACATTCCAGACCA	.	51	4	104	0	.	1255	T	118377325	C	T	118377325	3	4	122	1	0	0	0	0	1	0	0	0	9620	594	21	3	10815	3	MLL	11	118377325	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1002634	118377325	16629191	193	14825											
FOXR1	283150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118842683	118842683	+	Silent	SNP	C	C	A	rs145283417	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR1	NM_181721	exon1	c.C42A	p.L14L	TCACCTCCCCTTA	.	25	13	73	0	C|0.999;A|0.001	228	A	118842683	C	A	118842683	2	1	122	1	0	0	0	0	0	0	0	1	6031	842	30	3		3	FOXR1	11	118842683	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	465358	118842683	16163833	194	14826											
C11orf63	79864	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122830087	122830087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf63	NM_024806	exon9	c.A2271G	p.I757M	GGAAATACTGCAG	.	135	11	231	1	.	93	G	122830087	A	G	122830087	3	3	122	1	0	0	0	0	1	0	0	0	1654	381	14	2	2365	2	C11orf63	11	122830087	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3987404	122830087	12176429	195	14827											
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122930222	122930222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPA8	NM_006597	exon5	c.A1079G	p.N360S	CTCTTATTCAGTT	.	122	12	146	0	.	654	C	122930222	T	C	122930222	3	2	122	1	0	0	0	0	1	0	0	0	7416	1493	52	2	881	2	HSPA8	11	122930222	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	100135	122930222	12076294	196	14828											
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	123901212	123901212	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10G8	NM_001004464	exon1	c.A883T	p.K295X	GAGGTGAAGAAAG	.	201	63	284	0	.	92	T	123901212	A	T	123901212	4	4	122	1	0	0	0	0	0	1	0	0	10903	247	9	4	885	4	OR10G8	11	123901212	Nonsense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	970990	123901212	11105304	197	14829											
OR8G5	219865	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	124134976	124134976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001005198	exon1	c.G254A	p.G85E	TGATTGGGCTCAG	.	123	34	137	0	.	.	A	124134976	G	A	124134976	3	1	122	1	0	0	0	0	1	0	0	0	11236	1232	43	3	256	3	OR8G5	11	124134976	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	233764	124134976	10871540	198	14830											
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5153812	5153812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA5	NM_002234	exon1	c.C499T	p.R167C	TTCGACCGCAACC	.	63	26	98	0	.	715	T	5153812	C	T	5153812	3	4	122	1	0	0	0	0	1	0	0	0	8006	652	23	1	501	1	KCNA5	12	5153812	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		5153812	128698083	199	14831											
TAS2R43	259289	hgsc.bcm.edu;bcgsc.ca	37	12	11244577	11244577	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAS2R43	NM_176884	exon1	c.T252C	p.A84A	ATTATAAGCAGTA	.	107	6	152	0	.	1	G	11244577	A	G	11244577	2	3	122	1	0	0	0	0	0	0	0	1	15578	59	3	2		2	TAS2R43	12	11244577	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	6090765	11244577	122607318	200	14832											
ABCC9	10060	hgsc.bcm.edu;bcgsc.ca	37	12	21962812	21962812	+	Missense_Mutation	SNP	A	A	G	rs144125604		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC9	NM_005691	exon35	c.T4289C	p.M1430T	TTGACCATATTCT	.	45	4	60	0	A|1.000;G|0.000	96	G	21962812	A	G	21962812	3	3	122	1	0	0	0	0	1	0	0	0	59	217	8	2	518	2	ABCC9	12	21962812	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	10718235	21962812	111889083	201	14833											
STK38L	23012	hgsc.bcm.edu;bcgsc.ca	37	12	27475143	27475143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STK38L	NM_015000	exon13	c.C1243T	p.P415S	GACTTCCCTGAAT	.	58	5	75	0	.	980	T	27475143	C	T	27475143	3	4	122	1	0	0	0	0	1	0	0	0	15303	623	22	3	1289	3	STK38L	12	27475143	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	5512331	27475143	106376752	202	14834											
ANO6	196527	hgsc.bcm.edu;bcgsc.ca	37	12	45742051	45742051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO6	NM_001204803	exon6	c.A649T	p.I217L	TTTTACATAGTTG	.	213	16	275	0	.	516	T	45742051	A	T	45742051	3	4	122	1	0	0	0	0	1	0	0	0	701	217	8	4	624	4	ANO6	12	45742051	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	18266908	45742051	88109844	203	14835											
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48491823	48491823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.C89T	p.P30L	GTTTGTGGCAGGA	.	73	4	106	0	.	660	A	48491823	G	A	48491823	3	1	122	1	0	0	0	0	1	0	0	0	14046	1348	47	3	1906	3	SENP1	12	48491823	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2749772	48491823	85360072	204	14836											
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48491866	48491866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.A46G	p.T16A	CTAAAGTCACTTC	.	81	4	117	0	.	660	C	48491866	T	C	48491866	3	2	122	1	0	0	0	0	1	0	0	0	14046	1667	58	2	1949	2	SENP1	12	48491866	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	43	48491866	85360029	205	14837											
SMARCC2	6601	broad.mit.edu;bcgsc.ca	37	12	56558092	56558093	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCC2	NM_003075	exon27	c.3563_3564insAC	p.L1188fs	CCTGGCAGTGGGC	.	28	8	48	0	.	229	GT	56558093	-	GT	56558092	7	5	122	1	0	1	1	0	0	0	0	0	14776	188	7	0	89	0	SMARCC2	12	56558092	Frame_Shift_Ins	INS	-	TCGA-EP-A2KA-01A-11D-A183-10	8066226	56558092	77293803	206	14838											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57573622	57573622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon30	c.C5024G	p.T1675R	TCTGGACAAGCTA	.	72	16	89	0	.	596	G	57573622	C	G	57573622	3	3	122	1	0	0	0	0	1	0	0	0	8951	478	17	4	5142	4	LRP1	12	57573622	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1015530	57573622	76278273	207	14839											
SHMT2	6472	hgsc.bcm.edu;bcgsc.ca	37	12	57627867	57627867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHMT2	NM_005412	exon11	c.T1361C	p.I454T	TCAACATTGGCTT	.	94	5	98	0	.	91	C	57627867	T	C	57627867	3	2	122	1	0	0	0	0	1	0	0	0	14286	1493	52	2	1403	2	SHMT2	12	57627867	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	54245	57627867	76224028	208	14840											
TPH2	121278	hgsc.bcm.edu;bcgsc.ca	37	12	72416258	72416258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPH2	NM_173353	exon9	c.C1148A	p.S383Y	TTTCCTCCATTGG	.	74	4	111	0	.	93	A	72416258	C	A	72416258	3	1	122	1	0	0	0	0	1	0	0	0	16399	855	30	3	1182	3	TPH2	12	72416258	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	14788391	72416258	61435637	209	14841											
CAPS2	84698	hgsc.bcm.edu;bcgsc.ca	37	12	75683540	75683540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAPS2	NM_032606	exon15	c.A1313G	p.K438R	TGTAGTTTTTCTT	.	98	4	107	0	.	92	C	75683540	T	C	75683540	3	2	122	1	0	0	0	0	1	0	0	0	2638	1841	64	2	376	2	CAPS2	12	75683540	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	3267282	75683540	58168355	210	14842											
PAWR	5074	hgsc.bcm.edu;bcgsc.ca	37	12	80007382	80007382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAWR	NM_002583	exon4	c.C656A	p.P219H	GTTCTAGGTGGCT	.	98	6	137	0	.	90	T	80007382	G	T	80007382	3	4	122	1	0	0	0	0	1	0	0	0	11477	1000	35	3	382	3	PAWR	12	80007382	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	4323842	80007382	53844513	211	14843											
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	90015326	90015326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP2B1	NM_001001323	exon9	c.G1587T	p.L529F	CCTTACCAATATT	.	81	4	115	0	.	516	A	90015326	C	A	90015326	3	1	122	1	0	0	0	0	1	0	0	0	1139	608	21	3	2281	3	ATP2B1	12	90015326	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	10007944	90015326	43836569	212	14844											
KIAA1033	23325	hgsc.bcm.edu;bcgsc.ca	37	12	105534742	105534742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1033	NM_015275	exon17	c.G1626T	p.L542F	AGTTTTGGCTGAA	.	103	5	162	0	.	91	T	105534742	G	T	105534742	3	4	122	1	0	0	0	0	1	0	0	0	8206	1339	47	3	1692	3	KIAA1033	12	105534742	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	15519416	105534742	28317153	213	14845											
OAS1	4938	hgsc.bcm.edu;bcgsc.ca	37	12	113357204	113357204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OAS1	NM_016816	exon6	c.A1049G	p.N350S	AAAGCAACAGTGC	.	92	5	93	0	.	70	G	113357204	A	G	113357204	3	3	122	1	0	0	0	0	1	0	0	0	10799	43	2	2	1128	2	OAS1	12	113357204	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	7822462	113357204	20494691	214	14846											
CAMKK2	10645	hgsc.bcm.edu;bcgsc.ca	37	12	121701741	121701741	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAMKK2	NM_153500	exon6	c.T627C	p.R209R	AGGGCGACCTGAA	.	76	4	62	0	.	450	G	121701741	A	G	121701741	2	3	122	1	0	0	0	0	0	0	0	1	2607	289	10	2		2	CAMKK2	12	121701741	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	8344537	121701741	12150154	215	14847											
LRRC43	254050	hgsc.bcm.edu;bcgsc.ca	37	12	122669301	122669301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC43	NM_001098519	exon2	c.G386T	p.R129L	ACTTCCGGTCCCT	.	144	6	192	0	.	135	T	122669301	G	T	122669301	3	4	122	1	0	0	0	0	1	0	0	0	9001	1116	39	1	392	1	LRRC43	12	122669301	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	967560	122669301	11182594	216	14848											
SETD8	387893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123880916	123880924	+	In_Frame_Del	DEL	TCGCAAACT	TCGCAAACT	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	TCGCAAACT	TCGCAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD8	NM_020382	exon5	c.534_542del	p.178_181del	ACAGAATCGCAAA	.	54	16	93	0	.	90	-	123880924	TCGCAAACT	-	123880916	7	5	122	1	0	1	0	1	0	0	0	0	14137	1432	50	0	552	0	SETD8	12	123880916	In_Frame_Del	DEL	TCGCAAACT	TCGA-EP-A2KA-01A-11D-A183-10	1211615	123880916	9970979	217	14849											
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23908202	23908202	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SACS	NM_014363	exon10	c.T9813C	p.V3271V	ATCAACAACAATG	.	84	4	98	0	.	298	G	23908202	A	G	23908202	2	3	122	1	0	0	0	0	0	0	0	1	13804	117	5	2		2	SACS	13	23908202	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10		23908202	91261676	218	14850											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36239245	36239245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEA	NM_015678	exon55	c.G8323A	p.V2775I	AGAGCCGTCCTCA	.	177	53	282	0	.	144	A	36239245	G	A	36239245	3	1	122	1	0	0	0	0	1	0	0	0	10187	1145	40	1	8541	1	NBEA	13	36239245	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	12331043	36239245	78930633	219	14851											
KLF12	11278	hgsc.bcm.edu;bcgsc.ca	37	13	74420058	74420058	+	Silent	SNP	C	C	A	rs200955639	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLF12	NM_007249	exon4	c.G576T	p.S192S	AGGCACCGACTGT	.	137	7	166	0	C|0.999;T|0.000	91	A	74420058	C	A	74420058	2	1	122	1	0	0	0	0	0	0	0	1	8340	639	23	1		1	KLF12	13	74420058	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	38180813	74420058	40749820	220	14852											
COL4A1	1282	hgsc.bcm.edu;bcgsc.ca	37	13	110831299	110831299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A1	NM_001845	exon31	c.C2429A	p.P810H	CCTCCAGGGGGAC	.	52	4	69	0	.	654	T	110831299	G	T	110831299	3	4	122	1	0	0	0	0	1	0	0	0	3689	1000	35	3	2668	3	COL4A1	13	110831299	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	36411241	110831299	4338579	221	14853											
COL4A2	1284	hgsc.bcm.edu;bcgsc.ca	37	13	111144454	111144454	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A2	NM_001846	exon38	c.A3492G	p.G1164G	GCAGGGAGAGCTG	.	57	4	84	0	.	95	G	111144454	A	G	111144454	2	3	122	1	0	0	0	0	0	0	0	1	3690	291	11	2		2	COL4A2	13	111144454	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	313155	111144454	4025424	222	14854											
ATP11A	23250	hgsc.bcm.edu;bcgsc.ca	37	13	113512575	113512575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP11A	NM_032189	exon22	c.T2638C	p.S880P	AGGATCTCTGAGC	.	121	5	168	0	.	138	C	113512575	T	C	113512575	3	2	122	1	0	0	0	0	1	0	0	0	1119	1551	54	2	2724	2	ATP11A	13	113512575	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	2368121	113512575	1657303	223	14855											
RASA3	22821	hgsc.bcm.edu;bcgsc.ca	37	13	114780788	114780788	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASA3	NM_007368	exon14	c.G1302A	p.V434V	GCGGTCCACATAC	.	59	4	81	0	.	658	T	114780788	C	T	114780788	2	4	122	1	0	0	0	0	0	0	0	1	13062	581	21	3		3	RASA3	13	114780788	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1268213	114780788	389090	224	14856											
OR4K14	122740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20483233	20483233	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR4K14	NM_001004712	exon1	c.G120T	p.L40L	GTTACCCAGCATA	.	224	78	296	0	.	115	A	20483233	C	A	20483233	2	1	122	1	0	0	0	0	0	0	0	1	11069	581	21	3		3	OR4K14	14	20483233	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		20483233	86866307	225	14857											
CCNB1IP1	57820	ucsc.edu;bcgsc.ca	37	14	20784551	20784551	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCNB1IP1	NM_182852	exon6	c.A132G	p.S44S	AGCTGGTGAGCGA	.	43	4	76	1	.	659	C	20784551	T	C	20784551	2	2	122	1	0	0	0	0	0	0	0	1	2912	1683	59	2		2	CCNB1IP1	14	20784551	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	301318	20784551	86564989	226	14858											
OXA1L	5018	hgsc.bcm.edu;bcgsc.ca	37	14	23237290	23237290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OXA1L	NM_005015	exon3	c.G529T	p.G177W	GGGCTGGGGTCAT	.	68	4	113	0	.	204	T	23237290	G	T	23237290	3	4	122	1	0	0	0	0	1	0	0	0	11328	1232	43	3	539	3	OXA1L	14	23237290	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2452739	23237290	84112250	227	14859											
PRKD1	5587	hgsc.bcm.edu;bcgsc.ca	37	14	30068321	30068321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKD1	NM_002742	exon15	c.C2078T	p.A693V	CGCAAAGCCACGA	.	70	4	101	0	.	1534	A	30068321	G	A	30068321	3	1	122	1	0	0	0	0	1	0	0	0	12518	971	34	3	676	3	PRKD1	14	30068321	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	6831031	30068321	77281219	228	14860											
FANCM	57697	hgsc.bcm.edu;bcgsc.ca	37	14	45633698	45633698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FANCM	NM_020937	exon10	c.G1718T	p.R573L	TACAACGAATGGG	.	80	4	128	0	.	569	T	45633698	G	T	45633698	3	4	122	1	0	0	0	0	1	0	0	0	5671	1058	37	1	1756	1	FANCM	14	45633698	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	15565377	45633698	61715842	229	14861											
PRKCH	5583	hgsc.bcm.edu;bcgsc.ca	37	14	61920071	61920071	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKCH	NM_006255	exon7	c.G960T	p.S320S	AACCTCGGTGAGA	.	112	5	114	0	.	1063	T	61920071	G	T	61920071	2	4	122	1	0	0	0	0	0	0	0	1	12513	1130	39	1		1	PRKCH	14	61920071	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	16286373	61920071	45429469	230	14862											
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64641845	64641845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SYNE2	NM_182914	exon95	c.A17419G	p.S5807G	TTCCAGAGCACTG	.	113	5	88	0	.	164	G	64641845	A	G	64641845	3	3	122	1	0	0	0	0	1	0	0	0	15443	304	11	2	17793	2	SYNE2	14	64641845	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	2721774	64641845	42707695	231	14863											
RAB15	376267	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	65417736	65417736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAB15	NM_198686	exon4	c.C380A	p.A127E	CGCCTTGCCTTCC	.	35	5	31	0	.	228	T	65417736	G	T	65417736	3	4	122	1	0	0	0	0	1	0	0	0	12901	1319	46	3	262	3	RAB15	14	65417736	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	775891	65417736	41931804	232	14864											
PTPN21	11099	hgsc.bcm.edu;bcgsc.ca	37	14	88974267	88974267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPN21	NM_007039	exon4	c.G448A	p.A150T	ATTTACCTTGAAC	.	79	4	95	0	.	230	T	88974267	C	T	88974267	3	4	122	1	0	0	0	0	1	0	0	0	12786	695	24	3	3140	3	PTPN21	14	88974267	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	23556531	88974267	18375273	233	14865											
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91700499	91700499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR68	NM_001177676	exon2	c.G896A	p.R299H	CGGAGGCGGGCCA	.	32	11	40	0	.	91	T	91700499	C	T	91700499	3	4	122	1	0	0	0	0	1	0	0	0	6707	768	27	1	205	1	GPR68	14	91700499	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2726232	91700499	15649041	234	14866											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102494143	102494143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon47	c.C9236A	p.A3079E	ACCGGGCAGCTAC	.	59	14	88	0	.	98	A	102494143	C	A	102494143	3	1	122	1	0	0	0	0	1	0	0	0	4841	710	25	3	9422	3	DYNC1H1	14	102494143	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	10793644	102494143	4855397	235	14867											
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102805186	102805186	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF839	NM_018335	exon6	c.C1693A	p.R565R	TTCCTACGGAAGA	.	149	35	217	0	.	91	A	102805186	C	A	102805186	2	1	122	1	0	0	0	0	0	0	0	1	18185	527	19	1		1	ZNF839	14	102805186	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	311043	102805186	4544354	236	14868											
TDRD9	122402	hgsc.bcm.edu;bcgsc.ca	37	14	104470585	104470585	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TDRD9	NM_153046	exon14	c.A1494G	p.G498G	TGCTGGACGAGTG	.	91	4	137	0	.	70	G	104470585	A	G	104470585	2	3	122	1	0	0	0	0	0	0	0	1	15733	262	10	2		2	TDRD9	14	104470585	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1665399	104470585	2878955	237	14869											
GABRB3	2562	hgsc.bcm.edu;bcgsc.ca	37	15	26812847	26812847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRB3	NM_021912	exon7	c.T716C	p.L239S	CTCTTCAACCGAA	.	80	4	103	0	.	518	G	26812847	A	G	26812847	3	3	122	1	0	0	0	0	1	0	0	0	6168	131	5	2	717	2	GABRB3	15	26812847	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10		26812847	75718545	238	14870											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33855056	33855056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RYR3	NM_001243996	exon11	c.G991T	p.D331Y	AAATTAGACTCCA	.	86	30	120	0	.	520	T	33855056	G	T	33855056	3	4	122	1	0	0	0	0	1	0	0	0	13770	942	33	3	1033	3	RYR3	15	33855056	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	7042209	33855056	68676336	239	14871											
NDUFAF1	51103	hgsc.bcm.edu;bcgsc.ca	37	15	41687071	41687071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDUFAF1	NM_016013	exon3	c.T745C	p.W249R	CCTGCCAGTAGGG	.	71	4	95	0	.	91	G	41687071	A	G	41687071	3	3	122	1	0	0	0	0	1	0	0	0	10274	188	7	2	250	2	NDUFAF1	15	41687071	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	7832015	41687071	60844321	240	14872											
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44876208	44876208	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPG11	NM_025137	exon30	c.T5670C	p.C1890C	ATGCACACAGCCA	.	98	5	102	0	.	95	G	44876208	A	G	44876208	2	3	122	1	0	0	0	0	0	0	0	1	15040	157	6	2		2	SPG11	15	44876208	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	3189137	44876208	57655184	241	14873											
SPATA5L1	79029	hgsc.bcm.edu;bcgsc.ca	37	15	45713246	45713246	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA5L1	NM_024063	exon8	c.T2100C	p.A700A	GGCTGCTTTGCTG	.	60	4	43	0	.	94	C	45713246	T	C	45713246	2	2	122	1	0	0	0	0	0	0	0	1	15011	1596	56	2		2	SPATA5L1	15	45713246	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	837038	45713246	56818146	242	14874											
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49320786	49320786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SECISBP2L	NM_001193489	exon5	c.C758G	p.P253R	GCAGTAGGGTGGG	.	140	50	218	0	.	136	C	49320786	G	C	49320786	3	2	122	1	0	0	0	0	1	0	0	0	14007	1000	35	4	2464	4	SECISBP2L	15	49320786	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	3607540	49320786	53210606	243	14875											
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55664085	55664085	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCPG1	NM_020739	exon6	c.G612A	p.K204K	CAACTCCTTAGAA	.	204	34	271	0	.	91	T	55664085	C	T	55664085	2	4	122	1	0	0	0	0	0	0	0	1	2938	680	24	3		3	CCPG1	15	55664085	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6343299	55664085	46867307	244	14876											
VPS13C	54832	hgsc.bcm.edu;bcgsc.ca	37	15	62202491	62202491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13C	NM_020821	exon64	c.G8729T	p.W2910L	TCTGGCCAAAATG	.	78	4	100	0	.	92	A	62202491	C	A	62202491	3	1	122	1	0	0	0	0	1	0	0	0	17188	595	21	3	2648	3	VPS13C	15	62202491	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6538406	62202491	40328901	245	14877											
FBXL22	283807	hgsc.bcm.edu;bcgsc.ca	37	15	63889776	63889776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXL22	NM_203373	exon1	c.A185G	p.K62R	TCCAGAAGGACAA	.	83	4	80	0	.	90	G	63889776	A	G	63889776	3	3	122	1	0	0	0	0	1	0	0	0	5719	72	3	2	169	2	FBXL22	15	63889776	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1687285	63889776	38641616	246	14878											
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65621487	65621487	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGDCC3	NM_004884	exon15	c.2206-1G>T	.	ATCCTGCTGGGGA	.	46	16	51	0	.	93	A	65621487	C	A	65621487	5	1	122	1	0	0	0	0	0	0	1	0	7568	811	28	3	243	3	IGDCC3	15	65621487	Splice_Site	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1731711	65621487	36909905	247	14879											
NEIL1	79661	hgsc.bcm.edu;bcgsc.ca	37	15	75647049	75647049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEIL1	NM_001256552	exon9	c.T1250C	p.L417P	GAGACCTTCCTAA	.	66	4	82	0	.	659	C	75647049	T	C	75647049	3	2	122	1	0	0	0	0	1	0	0	0	10318	1609	56	2	1022	2	NEIL1	15	75647049	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	10025562	75647049	26884343	248	14880											
NTRK3	4916	hgsc.bcm.edu;bcgsc.ca	37	15	88679734	88679734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK3	NM_001243101	exon8	c.G729C	p.W243C	GACTATCCAGTCC	.	75	4	134	0	.	3538	G	88679734	C	G	88679734	3	3	122	1	0	0	0	0	1	0	0	0	10708	856	30	4	2104	4	NTRK3	15	88679734	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	13032685	88679734	13851658	249	14881											
VPS33B	26276	hgsc.bcm.edu;bcgsc.ca	37	15	91549273	91549273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS33B	NM_018668	exon12	c.G869A	p.R290Q	TCGTTCCGAATCT	.	110	5	113	0	.	92	T	91549273	C	T	91549273	3	4	122	1	0	0	0	0	1	0	0	0	17199	652	23	1	1032	1	VPS33B	15	91549273	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2869539	91549273	10982119	250	14882											
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2339468	2339468	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA3	NM_001089	exon20	c.G2667A	p.E889E	CTCCTCCTCGATG	.	67	16	110	0	.	1015	T	2339468	C	T	2339468	2	4	122	1	0	0	0	0	0	0	0	1	33	680	24	3		3	ABCA3	16	2339468	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		2339468	88015285	251	14883											
SRRM2	23524	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2812361	2812361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRRM2	NM_016333	exon11	c.G1832T	p.R611L	CAGCCCGGAGGGG	.	54	5	89	0	.	93	T	2812361	G	T	2812361	3	4	122	1	0	0	0	0	1	0	0	0	15168	1116	39	1	1870	1	SRRM2	16	2812361	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	472893	2812361	87542392	252	14884											
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF75A	NM_153028	exon6	c.C521G	p.S174C	TTAGCTCTGACCT	.	199	62	220	0	.	153	G	3367499	C	G	3367499	3	3	122	1	0	0	0	0	1	0	0	0	18130	913	32	4	531	4	ZNF75A	16	3367499	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	555138	3367499	86987254	253	14885											
CREBBP	1387	hgsc.bcm.edu;bcgsc.ca	37	16	3778391	3778391	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CREBBP	NM_004380	exon31	c.C6657A	p.A2219A	CATGCCGGCACTC	.	76	5	82	0	.	1807	T	3778391	G	T	3778391	2	4	122	1	0	0	0	0	0	0	0	1	3861	1103	39	1		1	CREBBP	16	3778391	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	410892	3778391	86576362	254	14886											
USP7	7874	hgsc.bcm.edu;bcgsc.ca	37	16	9015082	9015082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP7	NM_003470	exon4	c.C454A	p.R152S	TACGACGACTGAA	.	134	7	148	0	.	661	T	9015082	G	T	9015082	3	4	122	1	0	0	0	0	1	0	0	0	17085	1058	37	1	2966	1	USP7	16	9015082	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5236691	9015082	81339671	255	14887											
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15127208	15127208	+	Silent	SNP	C	C	A	rs151129728	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDXDC1	NM_015027	exon19	c.C1764A	p.L588L	TGAGCTCGTGGAG	.	72	4	86	0	C|1.000;T|0.000	91	A	15127208	C	A	15127208	2	1	122	1	0	0	0	0	0	0	0	1	11696	871	31	1		1	PDXDC1	16	15127208	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6112126	15127208	75227545	256	14888											
USP31	57478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23080459	23080459	+	Silent	SNP	G	G	T	rs201814190	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon16	c.C2967A	p.I989I	ATAAGCGATCTGA	.	27	4	50	0	G|0.999;A|0.000	663	T	23080459	G	T	23080459	2	4	122	1	0	0	0	0	0	0	0	1	17059	1048	37	1		1	USP31	16	23080459	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	7953251	23080459	67274294	257	14889											
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23091273	23091273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon13	c.T2170C	p.Y724H	CTGTGTAGTGCCC	.	75	4	116	0	.	663	G	23091273	A	G	23091273	3	3	122	1	0	0	0	0	1	0	0	0	17059	420	15	2	1904	2	USP31	16	23091273	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	10814	23091273	67263480	258	14890											
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28167437	28167437	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XPO6	NM_015171	exon7	c.A1055T	p.N352I	TGGGCATTGTTAT	.	544	173	773	0	.	227	A	28167437	T	A	28167437	3	1	122	1	0	0	0	0	1	0	0	0	17445	1493	52	4	2394	4	XPO6	16	28167437	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	5076164	28167437	62187316	259	14891											
TUFM	7284	hgsc.bcm.edu;bcgsc.ca	37	16	28856082	28856082	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TUFM,NS,carcinoma,-2	TUFM	NM_003321	exon5	c.C621A	p.T207T	AAACTCGGTGAGC	.	100	4	126	0	.	91	T	28856082	G	T	28856082	2	4	122	1	0	0	0	0	0	0	0	1	16768	1103	39	1		1	TUFM	16	28856082	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	688645	28856082	61498671	260	14892											
SPN	6693	hgsc.bcm.edu;bcgsc.ca	37	16	29675060	29675060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPN	NM_001030288	exon2	c.T11C	p.L4P	CCACGCTTCTCCT	.	104	5	122	0	.	514	C	29675060	T	C	29675060	3	2	122	1	0	0	0	0	1	0	0	0	15072	1609	56	2	13	2	SPN	16	29675060	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	818978	29675060	60679693	261	14893											
DOC2A	8448	hgsc.bcm.edu;bcgsc.ca	37	16	30020840	30020840	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOC2A	NM_003586	exon3	c.C301A	p.R101R	AGGCCCGGTCGTA	.	57	4	58	0	.	92	T	30020840	G	T	30020840	2	4	122	1	0	0	0	0	0	0	0	1	4683	1115	39	1		1	DOC2A	16	30020840	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	345780	30020840	60333913	262	14894											
GDPD3	79153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30124047	30124047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GDPD3	NM_024307	exon3	c.G250A	p.V84M	GTGACACCACCAC	.	40	13	52	0	.	90	T	30124047	C	T	30124047	3	4	122	1	0	0	0	0	1	0	0	0	6325	507	18	3	738	3	GDPD3	16	30124047	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	103207	30124047	60230706	263	14895											
SETD1A	9739	hgsc.bcm.edu;bcgsc.ca	37	16	30976649	30976649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1A	NM_014712	exon7	c.A1586G	p.E529G	GGAGTGAGGTGCC	.	101	5	133	0	.	93	G	30976649	A	G	30976649	3	3	122	1	0	0	0	0	1	0	0	0	14130	304	11	2	1608	2	SETD1A	16	30976649	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	852602	30976649	59378104	264	14896											
HSD3B7	80270	hgsc.bcm.edu;bcgsc.ca	37	16	30997766	30997766	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSD3B7	NM_025193	exon4	c.T345C	p.A115A	CGAGGCTTGTGTG	.	123	6	96	0	.	90	C	30997766	T	C	30997766	2	2	122	1	0	0	0	0	0	0	0	1	7392	1596	56	2		2	HSD3B7	16	30997766	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	21117	30997766	59356987	265	14897											
SHCBP1	79801	hgsc.bcm.edu;bcgsc.ca	37	16	46633834	46633834	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHCBP1	NM_024745	exon9	c.C1254A	p.G418G	GCCTTTGCCCCTC	.	70	4	110	0	.	154	T	46633834	G	T	46633834	2	4	122	1	0	0	0	0	0	0	0	1	14274	1306	46	3		3	SHCBP1	16	46633834	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	15636068	46633834	43720919	266	14898											
ZDHHC1	29800	hgsc.bcm.edu;bcgsc.ca	37	16	67432186	67432186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZDHHC1	NM_013304	exon8	c.C856A	p.R286S	GTGGGCGGTGCTG	.	61	4	78	0	.	90	T	67432186	G	T	67432186	3	4	122	1	0	0	0	0	1	0	0	0	17597	1116	39	1	617	1	ZDHHC1	16	67432186	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	20798352	67432186	22922567	267	14899											
RLTPR	146206	hgsc.bcm.edu;bcgsc.ca	37	16	67679452	67679452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RLTPR	NM_001013838	exon2	c.C50T	p.T17I	AGATCACCAGGTT	.	75	4	109	0	.	67	T	67679452	C	T	67679452	3	4	122	1	0	0	0	0	1	0	0	0	13394	507	18	3	56	3	RLTPR	16	67679452	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	247266	67679452	22675301	268	14900											
FOXL1	2300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612739	86612739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXL1	NM_005250	exon1	c.A410C	p.N137T	ACGGCAACTACCG	.	93	12	63	1	.	227	C	86612739	A	C	86612739	3	2	122	1	0	0	0	0	1	0	0	0	6016	43	2	5	412	5	FOXL1	16	86612739	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	18933287	86612739	3742014	269	14901											
FOXL1	2300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612753	86612753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXL1	NM_005250	exon1	c.A424G	p.K142E	CGCCGGAAGAGGA	.	67	11	52	1	.	227	G	86612753	A	G	86612753	3	3	122	1	0	0	0	0	1	0	0	0	6016	247	9	2	426	2	FOXL1	16	86612753	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	14	86612753	3742000	270	14902											
TEKT1	83659	hgsc.bcm.edu;bcgsc.ca	37	17	6716342	6716342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEKT1	NM_053285	exon6	c.C660A	p.F220L	GCTGGAGAAGTCC	.	65	4	95	0	.	92	T	6716342	G	T	6716342	3	4	122	1	0	0	0	0	1	0	0	0	15749	933	33	3	608	3	TEKT1	17	6716342	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10		6716342	74478868	271	14903											
DVL2	1856	hgsc.bcm.edu;bcgsc.ca	37	17	7132581	7132581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon8	c.T830C	p.F277S	CCCAGGAAGTTGT	.	79	4	115	0	.	659	G	7132581	A	G	7132581	3	3	122	1	0	0	0	0	1	0	0	0	4836	246	9	2	1412	2	DVL2	17	7132581	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	416239	7132581	74062629	272	14904											
DVL2	1856	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7133190	7133190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon5	c.T593C	p.L198P	GTCATGAGGGTAG	.	50	4	93	0	.	659	G	7133190	A	G	7133190	3	3	122	1	0	0	0	0	1	0	0	0	4836	304	11	2	1661	2	DVL2	17	7133190	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	609	7133190	74062020	273	14905											
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7749921	7749921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDM6B	NM_001080424	exon8	c.C574T	p.R192W	GCCAAGCGGGGAG	.	63	26	73	0	.	205	T	7749921	C	T	7749921	3	4	122	1	0	0	0	0	1	0	0	0	8138	759	27	1	592	1	KDM6B	17	7749921	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	616731	7749921	73445289	274	14906											
NDEL1	81565	hgsc.bcm.edu;bcgsc.ca	37	17	8347657	8347657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDEL1	NM_001025579	exon2	c.C68A	p.S23Y	AACTTTCCTTGAA	.	88	4	120	0	.	90	A	8347657	C	A	8347657	3	1	122	1	0	0	0	0	1	0	0	0	10244	855	30	3	70	3	NDEL1	17	8347657	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	597736	8347657	72847553	275	14907											
TOM1L2	146691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17801962	17801962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TOM1L2	NM_001033551	exon3	c.A164G	p.K55R	CGCTTCTTCAGGG	.	295	119	314	1	.	90	C	17801962	T	C	17801962	3	2	122	1	0	0	0	0	1	0	0	0	16350	1609	56	2	1411	2	TOM1L2	17	17801962	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	9454305	17801962	63393248	276	14908											
RNF112	7732	hgsc.bcm.edu;bcgsc.ca	37	17	19314770	19314770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF112	NM_007148	exon1	c.A49G	p.K17E	CTTGGCAAACGGG	.	28	4	35	0	.	92	G	19314770	A	G	19314770	3	3	122	1	0	0	0	0	1	0	0	0	13426	131	5	2	51	2	RNF112	17	19314770	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1512808	19314770	61880440	277	14909											
CRYBA1	1411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27580737	27580737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CRYBA1	NM_005208	exon5	c.C437T	p.P146L	ACTACCCCTCCTT	.	162	27	123	0	.	90	T	27580737	C	T	27580737	3	4	122	1	0	0	0	0	1	0	0	0	3907	623	22	3	455	3	CRYBA1	17	27580737	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	8265967	27580737	53614473	278	14910											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29192785	29192785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATAD5	NM_024857	exon11	c.T3200C	p.I1067T	AACTTATAGGAAA	.	229	68	279	0	.	93	C	29192785	T	C	29192785	3	2	122	1	0	0	0	0	1	0	0	0	1076	1406	49	2	3242	2	ATAD5	17	29192785	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1612048	29192785	52002425	279	14911											
SPACA3	124912	hgsc.bcm.edu;bcgsc.ca	37	17	31323887	31323887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPACA3	NM_173847	exon3	c.G370T	p.G124C	ACAAGCGGTTTCA	.	123	5	141	0	.	92	T	31323887	G	T	31323887	3	4	122	1	0	0	0	0	1	0	0	0	14973	1116	39	1	380	1	SPACA3	17	31323887	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2131102	31323887	49871323	280	14912											
TAF15	8148	hgsc.bcm.edu;bcgsc.ca	37	17	34171487	34171487	+	Missense_Mutation	SNP	G	G	T	rs71381481	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF15	NM_139215	exon15	c.G1184T	p.R395L	ATTTCCGGGGGAG	.	182	8	158	0	G|0.999;A|0.001	723	T	34171487	G	T	34171487	3	4	122	1	0	0	0	0	1	0	0	0	15515	1116	39	1	1242	1	TAF15	17	34171487	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2847600	34171487	47023723	281	14913											
CCL15	6359	ucsc.edu;bcgsc.ca	37	17	34325404	34325404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCL15	NM_032965	exon3	c.T160C	p.C54R	AGGTGCAGCAGTC	.	41	4	51	0	.	91	G	34325404	A	G	34325404	3	3	122	1	0	0	0	0	1	0	0	0	2886	188	7	2	189	2	CCL15	17	34325404	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	153917	34325404	46869806	282	14914											
IKZF3	22806	bcgsc.ca;mdanderson.org	37	17	37922726	37922726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKZF3	NM_012481	exon8	c.G847T	p.D283Y	TGACATCAAAGCA	.	19	3	29	0	.	971	A	37922726	C	A	37922726	3	1	122	1	0	0	0	0	1	0	0	0	7616	826	29	3	686	3	IKZF3	17	37922726	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	3597322	37922726	43272484	283	14915											
KRT16	3868	hgsc.bcm.edu;bcgsc.ca	37	17	39766790	39766790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT16	NM_005557	exon6	c.A1073G	p.E358G	CTGTTCTCCAGGG	.	83	4	98	0	.	91	C	39766790	T	C	39766790	3	2	122	1	0	0	0	0	1	0	0	0	8453	1551	54	2	360	2	KRT16	17	39766790	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1844064	39766790	41428420	284	14916											
KCNH4	23415	hgsc.bcm.edu;bcgsc.ca	37	17	40321671	40321671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNH4	NM_012285	exon9	c.G1414A	p.G472R	CGTTCCCGAACAC	.	66	4	73	0	.	153	T	40321671	C	T	40321671	3	4	122	1	0	0	0	0	1	0	0	0	8034	652	23	1	1671	1	KCNH4	17	40321671	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	554881	40321671	40873539	285	14917											
VPS25	84313	hgsc.bcm.edu;bcgsc.ca	37	17	40928289	40928289	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS25	NM_032353	exon5	c.C369A	p.S123S	CAACTCCGTCTTT	.	121	5	174	0	.	90	A	40928289	C	A	40928289	2	1	122	1	0	0	0	0	0	0	0	1	17193	639	23	1		1	VPS25	17	40928289	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	606618	40928289	40266921	286	14918											
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41924620	41924620	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300LG	NM_001168323	exon1	c.G36A	p.L12L	CCTGCTGCTCCCA	.	94	22	106	0	.	90	A	41924620	G	A	41924620	2	1	122	1	0	0	0	0	0	0	0	1	3002	1306	46	3		3	CD300LG	17	41924620	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	996331	41924620	39270590	287	14919											
EFTUD2	9343	hgsc.bcm.edu;bcgsc.ca	37	17	42937415	42937415	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EFTUD2	NM_004247	exon19	c.1720-2A>G	.	TGAGCCTGAGATC	.	116	5	145	0	.	91	C	42937415	T	C	42937415	5	2	122	1	0	0	0	0	0	0	1	0	4961	1594	55	2	1244	2	EFTUD2	17	42937415	Splice_Site	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1012795	42937415	38257795	288	14920											
KIF18B	146909	hgsc.bcm.edu;bcgsc.ca	37	17	43012257	43012257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF18B	NM_001264573	exon4	c.T518C	p.L173P	ATGGCAAGGGGCC	.	56	5	57	0	.	70	G	43012257	A	G	43012257	3	3	122	1	0	0	0	0	1	0	0	0	8281	72	3	2	2100	2	KIF18B	17	43012257	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	74842	43012257	38182953	289	14921											
WFIKKN2	124857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48913333	48913333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WFIKKN2	NM_175575	exon1	c.G35A	p.R12H	GGTCTCGCTGGGA	.	110	41	127	0	.	93	A	48913333	G	A	48913333	3	1	122	1	0	0	0	0	1	0	0	0	17356	1087	38	1	37	1	WFIKKN2	17	48913333	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5901076	48913333	32281877	290	14922											
LPO	4025	hgsc.bcm.edu;bcgsc.ca	37	17	56344752	56344752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPO	NM_006151	exon12	c.A1736G	p.Q579R	AGCCGCAGACACT	.	62	4	88	0	.	91	G	56344752	A	G	56344752	3	3	122	1	0	0	0	0	1	0	0	0	8922	188	7	2	1778	2	LPO	17	56344752	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	7431419	56344752	24850458	291	14923											
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56690838	56690838	+	Missense_Mutation	SNP	G	G	T	rs150820263	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TEX14,NS,carcinoma,+1	TEX14	NM_001201457	exon9	c.C967A	p.R323S	CAAGGCGGGTTTT	.	144	7	198	1	G|1.000;A|0.000	810	T	56690838	G	T	56690838	3	4	122	1	0	0	0	0	1	0	0	0	15775	1116	39	1	3626	1	TEX14	17	56690838	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	346086	56690838	24504372	292	14924											
SCN4A	6329	hgsc.bcm.edu;bcgsc.ca	37	17	62022891	62022891	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCN4A	NM_000334	exon19	c.C3549A	p.A1183A	CTTGCCGGCAAAC	.	136	6	204	0	.	93	T	62022891	G	T	62022891	2	4	122	1	0	0	0	0	0	0	0	1	13920	1103	39	1		1	SCN4A	17	62022891	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5332053	62022891	19172319	293	14925											
ABCA9	10350	hgsc.bcm.edu;bcgsc.ca	37	17	67017907	67017907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA9	NM_080283	exon18	c.G2377A	p.G793R	ATTTTCCTTCTAA	.	57	4	62	0	.	95	T	67017907	C	T	67017907	3	4	122	1	0	0	0	0	1	0	0	0	39	690	24	3	2585	3	ABCA9	17	67017907	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	4995016	67017907	14177303	294	14926											
KIF19	124602	hgsc.bcm.edu;bcgsc.ca	37	17	72324604	72324604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF19	NM_153209	exon2	c.A80G	p.E27G	AGCTGGAGGAAGG	.	49	4	78	0	.	90	G	72324604	A	G	72324604	3	3	122	1	0	0	0	0	1	0	0	0	8282	304	11	2	86	2	KIF19	17	72324604	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	5306697	72324604	8870606	295	14927											
CD300C	10871	hgsc.bcm.edu;bcgsc.ca	37	17	72537867	72537867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300C	NM_006678	exon4	c.T536C	p.F179S	TTGCTGAACAGGG	.	55	4	76	0	.	90	G	72537867	A	G	72537867	3	3	122	1	0	0	0	0	1	0	0	0	2997	246	9	2	142	2	CD300C	17	72537867	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	213263	72537867	8657343	296	14928											
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73100204	73100204	+	Silent	SNP	G	G	C	rs141647560	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC16A5,brain,glioma,+2	SLC16A5	NM_001271765	exon6	c.G1293C	p.A431A	CGCGGCGGATGCC	.	133	39	176	0	G|0.999;A|0.001	90	C	73100204	G	C	73100204	2	2	122	1	0	0	0	0	0	0	0	1	14411	1103	39	4		4	SLC16A5	17	73100204	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	562337	73100204	8095006	297	14929											
TNRC6C	57690	hgsc.bcm.edu;bcgsc.ca	37	17	76046560	76046560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNRC6C	NM_018996	exon4	c.G1417A	p.D473N	AAAAATGACAATG	.	76	4	99	0	.	24	A	76046560	G	A	76046560	3	1	122	1	0	0	0	0	1	0	0	0	16339	1290	45	3	1419	3	TNRC6C	17	76046560	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2946356	76046560	5148650	298	14930											
EIF4A3	9775	hgsc.bcm.edu;bcgsc.ca	37	17	78109863	78109863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF4A3	NM_014740	exon11	c.C1159A	p.R387S	GGATGCGGATGTC	.	58	4	81	0	.	227	T	78109863	G	T	78109863	3	4	122	1	0	0	0	0	1	0	0	0	5026	1116	39	1	84	1	EIF4A3	17	78109863	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2063303	78109863	3085347	299	14931											
RNF213	57674	hgsc.bcm.edu;bcgsc.ca	37	17	78341922	78341922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF213	NM_001256071	exon44	c.C12134A	p.P4045Q	TCTCTCCAGCTGT	.	110	5	138	0	.	577	A	78341922	C	A	78341922	3	1	122	1	0	0	0	0	1	0	0	0	13477	594	21	3	12623	3	RNF213	17	78341922	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	232059	78341922	2853288	300	14932											
P4HB	5034	hgsc.bcm.edu;bcgsc.ca	37	17	79817083	79817083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P4HB	NM_000918	exon2	c.A326G	p.D109G	GCCGTGTCTCCAT	.	82	6	116	0	.	46	C	79817083	T	C	79817083	3	2	122	1	0	0	0	0	1	0	0	0	11359	1667	58	2	1240	2	P4HB	17	79817083	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1475161	79817083	1378127	301	14933											
EMILIN2	84034	hgsc.bcm.edu;bcgsc.ca	37	18	2891118	2891118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EMILIN2	NM_032048	exon4	c.G993T	p.E331D	CATGGAGGGCATG	.	78	5	88	0	.	93	T	2891118	G	T	2891118	3	4	122	1	0	0	0	0	1	0	0	0	5094	991	35	3	1007	3	EMILIN2	18	2891118	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10		2891118	75186130	302	14934											
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8378411	8378411	+	Missense_Mutation	SNP	G	G	T	rs202020478	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRM	NM_001105244	exon27	c.G3611T	p.R1204L	AATTCCGGGTAAG	.	87	4	156	0	G|0.999;A|0.001	228	T	8378411	G	T	8378411	3	4	122	1	0	0	0	0	1	0	0	0	12806	1130	39	1	3717	1	PTPRM	18	8378411	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5487293	8378411	69698837	303	14935											
PPP4R1	9989	hgsc.bcm.edu;bcgsc.ca	37	18	9557375	9557375	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPP4R1	NM_001042388	exon15	c.A2034G	p.K678K	TCGAACTTTCCAC	.	78	4	94	0	.	227	C	9557375	T	C	9557375	2	2	122	1	0	0	0	0	0	0	0	1	12403	1606	56	2		2	PPP4R1	18	9557375	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1178964	9557375	68519873	304	14936											
ZNF521	25925	hgsc.bcm.edu;bcgsc.ca	37	18	22806400	22806400	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF521,NS,carcinoma,-2	ZNF521	NM_015461	exon4	c.A1482G	p.E494E	GATGTGTTCCTGA	.	135	6	183	0	.	275	C	22806400	T	C	22806400	2	2	122	1	0	0	0	0	0	0	0	1	17962	1722	60	2		2	ZNF521	18	22806400	Silent	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	13249025	22806400	55270848	305	14937											
NOL4	8715	hgsc.bcm.edu;bcgsc.ca	37	18	31523052	31523052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NOL4	NM_003787	exon9	c.A1519G	p.R507G	GCATCCTCTTGGC	.	65	4	89	0	.	93	C	31523052	T	C	31523052	3	2	122	1	0	0	0	0	1	0	0	0	10524	1550	54	2	409	2	NOL4	18	31523052	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	8716652	31523052	46554196	306	14938											
MOCOS	55034	hgsc.bcm.edu;bcgsc.ca	37	18	33775243	33775243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MOCOS	NM_017947	exon2	c.G166T	p.G56C	CATGCAGGTGCCA	.	99	4	92	0	.	91	T	33775243	G	T	33775243	3	4	122	1	0	0	0	0	1	0	0	0	9689	1000	35	3	172	3	MOCOS	18	33775243	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2252191	33775243	44302005	307	14939											
MBD1	4152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47803368	47803368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBD1	NM_001204137	exon4	c.G226T	p.A76S	GATGGGCCTGGAA	.	131	28	166	0	.	228	A	47803368	C	A	47803368	3	1	122	1	0	0	0	0	1	0	0	0	9342	753	26	3	1837	3	MBD1	18	47803368	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	14028125	47803368	30273880	308	14940											
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	54349915	54349915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR7	NM_052834	exon5	c.351delC	p.Y117fs	GTTCTACCAGTTC	.	167	41	223	0	.	93	-	54349915	C	-	54349915	7	5	122	1	0	1	0	1	0	0	0	0	17317	518	18	0	365	0	WDR7	18	54349915	Frame_Shift_Del	DEL	C	TCGA-EP-A2KA-01A-11D-A183-10	6546547	54349915	23727333	309	14941											
NEDD4L	23327	hgsc.bcm.edu;bcgsc.ca	37	18	56002763	56002763	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEDD4L	NM_001144967	exon13	c.A1119G	p.E373E	TGAGGAACCAACG	.	115	5	110	0	.	658	G	56002763	A	G	56002763	2	3	122	1	0	0	0	0	0	0	0	1	10311	40	2	2		2	NEDD4L	18	56002763	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1652848	56002763	22074485	310	14942											
KDSR	2531	hgsc.bcm.edu;bcgsc.ca	37	18	61034244	61034244	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDSR	NM_002035	exon1	c.G108A	p.V36V	ACTCACCACCACA	.	134	6	226	0	.	227	T	61034244	C	T	61034244	2	4	122	1	0	0	0	0	0	0	0	1	8140	608	21	3		3	KDSR	18	61034244	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	5031481	61034244	17043004	311	14943											
SERPINB3	6317	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61324552	61324552	+	Missense_Mutation	SNP	C	C	A	rs150385073	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SERPINB3	NM_006919	exon6	c.G564T	p.K188N	AAATTTCTTCTCC	.	852	227	955	1	C|0.997;A|0.003	228	A	61324552	C	A	61324552	3	1	122	1	0	0	0	0	1	0	0	0	14102	912	32	3	620	3	SERPINB3	18	61324552	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	290308	61324552	16752696	312	14944											
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72999514	72999514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSHZ1	NM_005786	exon2	c.C2017A	p.P673T	ACAGAGCCTCTCA	.	64	4	85	0	.	90	A	72999514	C	A	72999514	3	1	122	1	0	0	0	0	1	0	0	0	16620	739	26	3	2019	3	TSHZ1	18	72999514	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	11674962	72999514	5077734	313	14945											
TCF3	6929	hgsc.bcm.edu;bcgsc.ca	37	19	1611812	1611812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF3	NM_003200	exon19	c.G1859T	p.R620L	TCTCGCCGTTTCA	.	122	5	168	0	.	721	A	1611812	C	A	1611812	3	1	122	1	0	0	0	0	1	0	0	0	15691	652	23	1	109	1	TCF3	19	1611812	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		1611812	57517171	314	14946											
UBXN6	80700	hgsc.bcm.edu;bcgsc.ca	37	19	4448329	4448329	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBXN6	NM_025241	exon5	c.G525T	p.V175V	GGTGTCCACACCC	.	65	4	71	0	.	90	A	4448329	C	A	4448329	2	1	122	1	0	0	0	0	0	0	0	1	16914	581	21	3		3	UBXN6	19	4448329	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2836517	4448329	54680654	315	14947											
FEM1A	55527	hgsc.bcm.edu;bcgsc.ca	37	19	4792961	4792961	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FEM1A	NM_018708	exon1	c.C1095A	p.T365T	GATCACCGACCCG	.	53	5	37	0	.	90	A	4792961	C	A	4792961	2	1	122	1	0	0	0	0	0	0	0	1	5809	639	23	1		1	FEM1A	19	4792961	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	344632	4792961	54336022	316	14948											
PTPRS	5802	hgsc.bcm.edu;bcgsc.ca	37	19	5208037	5208037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon37	c.A5674G	p.T1892A	TAAGCGTGATGAA	.	52	4	63	0	.	357	C	5208037	T	C	5208037	3	2	122	1	0	0	0	0	1	0	0	0	12811	1696	59	2	180	2	PTPRS	19	5208037	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	415076	5208037	53920946	317	14949											
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5216748	5216748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon26	c.C4079T	p.P1360L	AACCCCGGCTCCC	.	369	69	460	0	.	357	A	5216748	G	A	5216748	3	1	122	1	0	0	0	0	1	0	0	0	12811	1116	39	1	1819	1	PTPRS	19	5216748	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	8711	5216748	53912235	318	14950											
MLLT1	4298	hgsc.bcm.edu;bcgsc.ca	37	19	6222582	6222582	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLLT1	NM_005934	exon6	c.T660C	p.R220R	CTGCTCACGCTCC	.	71	5	58	0	.	658	G	6222582	A	G	6222582	2	3	122	1	0	0	0	0	0	0	0	1	9625	146	6	2		2	MLLT1	19	6222582	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1005834	6222582	52906401	319	14951											
CD97	976	ucsc.edu;bcgsc.ca	37	19	14512305	14512305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD97	NM_078481	exon10	c.A1005G	p.E335E	CCTTGAAGATATC	.	28	4	53	0	.	570	G	14512305	A	G	14512305	2	3	122	1	0	0	0	0	0	0	0	1	3049	69	3	2		2	CD97	19	14512305	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	8289723	14512305	44616678	320	14952											
GIPC1	10755	hgsc.bcm.edu;bcgsc.ca	37	19	14589371	14589371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GIPC1	NM_202468	exon8	c.A859G	p.M287V	CCACCATGGTGGC	.	107	6	149	0	.	226	C	14589371	T	C	14589371	3	2	122	1	0	0	0	0	1	0	0	0	6392	1464	51	2	146	2	GIPC1	19	14589371	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	77066	14589371	44539612	321	14953											
ZNF85	7639	hgsc.bcm.edu;bcgsc.ca	37	19	21132473	21132473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF85	NM_001256171	exon5	c.C1243A	p.L415I	TCACACCTTACTA	.	72	4	82	0	.	514	A	21132473	C	A	21132473	3	1	122	1	0	0	0	0	1	0	0	0	18190	681	24	3	1167	3	ZNF85	19	21132473	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6543102	21132473	37996510	322	14954											
ZNF429	353088	hgsc.bcm.edu;bcgsc.ca	37	19	21712459	21712459	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF429	NM_001001415	exon2	c.4-1G>T	.	GTTTCAGGGACCA	.	59	4	109	0	.	516	T	21712459	G	T	21712459	5	4	122	1	0	0	0	0	0	0	1	0	17899	1014	35	3	9	3	ZNF429	19	21712459	Splice_Site	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	579986	21712459	37416524	323	14955											
ZNF675	171392	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23836432	23836432	+	Silent	SNP	G	G	T	rs199957959	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF675	NM_138330	exon4	c.C1303A	p.R435R	AGGATCGGTTAAA	.	33	4	54	0	G|0.999;A|0.001	228	T	23836432	G	T	23836432	2	4	122	1	0	0	0	0	0	0	0	1	18079	1124	39	1		1	ZNF675	19	23836432	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2123973	23836432	35292551	324	14956											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36229093	36229093	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL4	NM_014727	exon36	c.7872+1G>T	.	GGGAAGGTGGGCT	.	46	16	123	0	.	697	T	36229093	G	T	36229093	5	4	122	1	0	0	0	0	0	0	1	0	9623	1275	44	3	8015	3	MLL4	19	36229093	Splice_Site	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	12392661	36229093	22899890	325	14957											
POLR2I	5438	hgsc.bcm.edu;bcgsc.ca	37	19	36605106	36605106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLR2I	NM_006233	exon4	c.C236A	p.P79Q	GTCCGCGGCAACG	.	123	7	129	0	.	90	T	36605106	G	T	36605106	3	4	122	1	0	0	0	0	1	0	0	0	12222	1116	39	1	153	1	POLR2I	19	36605106	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	376013	36605106	22523877	326	14958											
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37677107	37677107	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF585B	NM_152279	exon5	c.G1332A	p.G444G	CAATTTCCCACAG	.	198	61	243	0	.	91	T	37677107	C	T	37677107	2	4	122	1	0	0	0	0	0	0	0	1	18015	842	30	3		3	ZNF585B	19	37677107	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1072001	37677107	21451876	327	14959											
HNRNPL	3191	hgsc.bcm.edu;bcgsc.ca	37	19	39336338	39336338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HNRNPL	NM_001533	exon4	c.T662C	p.V221A	CTCTGGACAGGGC	.	66	4	79	0	.	22	G	39336338	A	G	39336338	3	3	122	1	0	0	0	0	1	0	0	0	7270	275	10	2	1147	2	HNRNPL	19	39336338	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1659231	39336338	19792645	328	14960											
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41206291	41206291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCK4	NM_024876	exon11	c.G959T	p.R320L	AGCACCCGTGTCG	.	77	29	109	0	.	319	A	41206291	C	A	41206291	3	1	122	1	0	0	0	0	1	0	0	0	290	652	23	1	695	1	ADCK4	19	41206291	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1869953	41206291	17922692	329	14961											
EGLN2	112398	hgsc.bcm.edu;bcgsc.ca	37	19	41306565	41306565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGLN2	NM_053046	exon2	c.G88A	p.G30S	GAGCCTGGCCGGG	.	96	4	108	0	.	228	A	41306565	G	A	41306565	3	1	122	1	0	0	0	0	1	0	0	0	4969	1348	47	3	90	3	EGLN2	19	41306565	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	100274	41306565	17822418	330	14962											
CD177	57126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43858024	43858024	+	RNA	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD177	.	.	.	.	GCTCTGCCAGTTT	.	99	28	146	1	.	22	G	43858024	C	G	43858024	1	3	122	0	1	0	0	0	0	0	0	0	2971	747	26	4		4	CD177	19	43858024	RNA	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	2551459	43858024	15270959	331	14963											
ZNF229	7772	hgsc.bcm.edu;bcgsc.ca	37	19	44934658	44934658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF229	NM_014518	exon6	c.C298A	p.H100N	CTTTGTGTGAAAA	.	95	4	118	0	.	94	T	44934658	G	T	44934658	3	4	122	1	0	0	0	0	1	0	0	0	17779	1377	48	3	2183	3	ZNF229	19	44934658	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1076634	44934658	14194325	332	14964											
CCDC61	729440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46498359	46498359	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC61	.	.	.	.	CCGGCTCTCCCTT	.	59	11	86	0	.	23	A	46498359	C	A	46498359	2	1	122	1	0	0	0	0	0	0	0	1	2832	900	32	3		3	CCDC61	19	46498359	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1563701	46498359	12630624	333	14965											
PPFIA3	8541	broad.mit.edu;bcgsc.ca	37	19	49636569	49636569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPFIA3	NM_003660	exon9	c.G1102A	p.A368T	CAGAAAGCGGAGA	.	163	27	155	1	.	226	A	49636569	G	A	49636569	3	1	122	1	0	0	0	0	1	0	0	0	12311	971	34	3	1132	3	PPFIA3	19	49636569	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	3138210	49636569	9492414	334	14966											
MYH14	79784	hgsc.bcm.edu;bcgsc.ca	37	19	50792838	50792838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH14	NM_001145809	exon35	c.A4898G	p.Q1633R	AGACTCAGCATGA	.	70	4	82	0	.	23	G	50792838	A	G	50792838	3	3	122	1	0	0	0	0	1	0	0	0	10033	188	7	2	5032	2	MYH14	19	50792838	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	1156269	50792838	8336145	335	14967											
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca	37	19	52569527	52569527	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001136499	exon7	c.C1608A	p.T536T	CTCTCCGGTATGA	.	79	4	74	0	.	.	T	52569527	G	T	52569527	2	4	122	1	0	0	0	0	0	0	0	1	18186	1103	39	1		1	ZNF841	19	52569527	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1776689	52569527	6559456	336	14968											
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca	37	19	52570470	52570470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001136499	exon7	c.C665A	p.P222Q	TGAAGTGGTGAAG	.	76	4	103	0	.	.	T	52570470	G	T	52570470	3	4	122	1	0	0	0	0	1	0	0	0	18186	1348	47	3	2113	3	ZNF841	19	52570470	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	943	52570470	6558513	337	14969											
ZNF132	7691	hgsc.bcm.edu;bcgsc.ca	37	19	58945140	58945140	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF132	NM_003433	exon3	c.T1671C	p.T557T	AATGAGAGTGGAG	.	91	4	166	0	.	92	G	58945140	A	G	58945140	2	3	122	1	0	0	0	0	0	0	0	1	17719	291	11	2		2	ZNF132	19	58945140	Silent	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	6374670	58945140	183843	338	14970											
MCM8	84515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	5974231	5974231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM8	NM_032485	exon18	c.T2320C	p.S774P	AACAGGTCAACAG	.	88	8	111	1	.	227	C	5974231	T	C	5974231	3	2	122	1	0	0	0	0	1	0	0	0	9393	1667	58	2	2386	2	MCM8	20	5974231	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10		5974231	57051289	339	14971											
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20055874	20055874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C20orf26	NM_015585	exon5	c.T413C	p.L138P	TATTTCTCATCGT	.	140	42	218	0	.	94	C	20055874	T	C	20055874	3	2	122	1	0	0	0	0	1	0	0	0	2106	1551	54	2	427	2	C20orf26	20	20055874	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	14081643	20055874	42969646	340	14972											
GZF1	64412	hgsc.bcm.edu;bcgsc.ca	37	20	23345335	23345335	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GZF1	NM_022482	exon1	c.G315T	p.R105R	AGATCGGGTGCAG	.	93	4	123	0	.	91	T	23345335	G	T	23345335	2	4	122	1	0	0	0	0	0	0	0	1	6914	1219	43	3		3	GZF1	20	23345335	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	3289461	23345335	39680185	341	14973											
ZNF341	84905	hgsc.bcm.edu;bcgsc.ca	37	20	32328755	32328755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF341	NM_032819	exon2	c.C79A	p.Q27K	GATGGCCAAGGAG	.	55	4	105	0	.	92	A	32328755	C	A	32328755	3	1	122	1	0	0	0	0	1	0	0	0	17854	595	21	3	85	3	ZNF341	20	32328755	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	8983420	32328755	30696765	342	14974											
TGM2	7052	ucsc.edu;bcgsc.ca	37	20	36769692	36769692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TGM2	NM_198951	exon8	c.A1091G	p.K364R	TCGCTCTTCTCCT	.	32	4	65	0	.	155	C	36769692	T	C	36769692	3	2	122	1	0	0	0	0	1	0	0	0	15827	1609	56	2	1028	2	TGM2	20	36769692	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	4440937	36769692	26255828	343	14975											
LPIN3	64900	hgsc.bcm.edu;bcgsc.ca	37	20	39986061	39986061	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPIN3	NM_022896	exon16	c.C2013A	p.I671I	GGGCATCACCAGT	.	65	5	66	0	.	93	A	39986061	C	A	39986061	2	1	122	1	0	0	0	0	0	0	0	1	8920	816	29	3		3	LPIN3	20	39986061	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	3216369	39986061	23039459	344	14976											
SLC12A5	57468	hgsc.bcm.edu;bcgsc.ca	37	20	44676618	44676618	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A5	NM_001134771	exon16	c.1977-2A>G	.	GCTCCCAGGGCAG	.	42	4	60	0	.	156	G	44676618	A	G	44676618	5	3	122	1	0	0	0	0	0	0	1	0	14386	202	7	2	2093	2	SLC12A5	20	44676618	Splice_Site	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	4690557	44676618	18348902	345	14977											
NCOA3	8202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46264392	46264392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon11	c.T1469G	p.I490S	AGAATATCATGAT	.	143	37	143	0	.	229	G	46264392	T	G	46264392	3	3	122	1	0	0	0	0	1	0	0	0	10230	1435	50	5	1503	5	NCOA3	20	46264392	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	1587774	46264392	16761128	346	14978											
NCOA3	8202	broad.mit.edu;bcgsc.ca	37	20	46265318	46265320	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon12	c.2218_2220del	p.740_740del	AGTCCTAAGAAGA	.	205	28	197	0	.	229	-	46265320	AAG	-	46265318	7	5	122	1	0	1	0	1	0	0	0	0	10230	363	13	0	2256	0	NCOA3	20	46265318	In_Frame_Del	DEL	AAG	TCGA-EP-A2KA-01A-11D-A183-10	926	46265318	16760202	347	14979											
GRIK1	2897	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	30971254	30971254	+	Silent	SNP	G	G	T	rs113829116	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIK1	NM_175611	exon8	c.C1102A	p.R368R	CCCACCGGGCCTG	.	45	4	48	0	T|0.000;C|0.999	137	T	30971254	G	T	30971254	2	4	122	1	0	0	0	0	0	0	0	1	6773	1115	39	1		1	GRIK1	21	30971254	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10		30971254	17158641	348	14980											
TIAM1	7074	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	32639202	32639202	+	Silent	SNP	G	G	T	rs139712298	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIAM1	NM_003253	exon5	c.C87A	p.S29S	GCGCAGGGAGCGG	.	41	4	87	0	G|0.999;A|0.001	724	T	32639202	G	T	32639202	2	4	122	1	0	0	0	0	0	0	0	1	15887	1219	43	3		3	TIAM1	21	32639202	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1667948	32639202	15490693	349	14981											
PSMG1	8624	hgsc.bcm.edu;bcgsc.ca	37	21	40553799	40553799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSMG1	NM_203433	exon2	c.T140C	p.V47A	AGCCGCACTTCCC	.	89	6	94	0	.	68	G	40553799	A	G	40553799	3	3	122	1	0	0	0	0	1	0	0	0	12711	159	6	2	750	2	PSMG1	21	40553799	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	7914597	40553799	7576096	350	14982											
CBS	875	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	44488625	44488625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBS	NM_000071	exon4	c.G310T	p.E104X	AGAGCTCACACTT	.	150	54	226	1	.	90	A	44488625	C	A	44488625	4	1	122	1	0	0	0	0	0	1	0	0	2711	835	29	3	1401	3	CBS	21	44488625	Nonsense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	3934826	44488625	3641270	351	14983											
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46020985	46020985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_198689	exon2	c.C449A	p.P150H	CCTCCCCCTGCCA	.	437	120	630	0	.	.	A	46020985	C	A	46020985	3	1	122	1	0	0	0	0	1	0	0	0	8514	623	22	3	455	3	KRTAP10-7	21	46020985	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1532360	46020985	2108910	352	14984											
LSS	4047	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	47616149	47616149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSS	NM_001001438	exon18	c.G1703T	p.R568L	TGCCGCCGACAGA	.	41	4	72	0	.	90	A	47616149	C	A	47616149	3	1	122	1	0	0	0	0	1	0	0	0	9065	652	23	1	515	1	LSS	21	47616149	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1595164	47616149	513746	353	14985											
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47680812	47680812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM3AP	NM_003906	exon15	c.A3476G	p.Q1159R	CTCTCTTGTTTCA	.	54	4	122	0	.	291	C	47680812	T	C	47680812	3	2	122	1	0	0	0	0	1	0	0	0	9388	1812	63	2	2522	2	MCM3AP	21	47680812	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	64663	47680812	449083	354	14986											
DGCR14	8220	hgsc.bcm.edu;bcgsc.ca	37	22	19126802	19126802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DGCR14	NM_022719	exon6	c.T692C	p.V231A	TCAGGGACACCTG	.	78	4	61	0	.	116	G	19126802	A	G	19126802	3	3	122	1	0	0	0	0	1	0	0	0	4460	275	10	2	758	2	DGCR14	22	19126802	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10		19126802	32177764	355	14987											
GAS2L1	10634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29706428	29706428	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.634-1G>T	.	GCCTCAGGTGAGG	.	173	72	129	0	.	90	T	29706428	G	T	29706428	5	4	122	1	0	0	0	0	0	0	1	0	6246	1014	35	3	639	3	GAS2L1	22	29706428	Splice_Site	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	10579626	29706428	21598138	356	14988	81	2									
GAS2L1	10634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29706429	29706429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.G634T	p.V212L	CCTCAGGTGAGGG	.	174	73	130	1	.	90	T	29706429	G	T	29706429	3	4	122	1	0	0	0	0	1	0	0	0	6246	1275	44	3	640	3	GAS2L1	22	29706429	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1	29706429	21598137	357	14989	81	2									
DDX17	10521	hgsc.bcm.edu;broad.mit.edu	37	22	38897259	38897259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX17	NM_006386	exon2	c.T314C	p.L105P	GGGGGAAGGCCAC	.	73	4	63	0	.	229	G	38897259	A	G	38897259	3	3	122	1	0	0	0	0	1	0	0	0	4344	72	3	2	1929	2	DDX17	22	38897259	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	9190830	38897259	12407307	358	14990											
CBX7	23492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	39530449	39530449	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBX7	NM_175709	exon5	c.G555A	p.A185A	GCCAGCCGCCTGC	.	56	20	88	0	.	227	T	39530449	C	T	39530449	2	4	122	1	0	0	0	0	0	0	0	1	2723	639	23	1		1	CBX7	22	39530449	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	633190	39530449	11774117	359	14991											
SGSM3	27352	hgsc.bcm.edu;bcgsc.ca	37	22	40803251	40803251	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM3	NM_015705	exon12	c.G1287T	p.T429T	GCAGACGGAACTG	.	94	6	113	0	.	494	T	40803251	G	T	40803251	2	4	122	1	0	0	0	0	0	0	0	1	14224	1103	39	1		1	SGSM3	22	40803251	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1272802	40803251	10501315	360	14992											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41573037	41573037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EP300	NM_001429	exon31	c.A5322T	p.K1774N	ACGGAAAACCAAT	.	85	6	78	0	.	2011	T	41573037	A	T	41573037	3	4	122	1	0	0	0	0	1	0	0	0	5148	11	1	4	5444	4	EP300	22	41573037	Missense_Mutation	SNP	A	TCGA-EP-A2KA-01A-11D-A183-10	769786	41573037	9731529	361	14993											
GTSE1	51512	hgsc.bcm.edu;bcgsc.ca	37	22	46704834	46704834	+	Silent	SNP	G	G	T	rs200502529	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GTSE1	NM_016426	exon4	c.G756T	p.A252A	GGCTGCGGAGAAG	.	64	4	112	0	G|0.999;A|0.001	187	T	46704834	G	T	46704834	2	4	122	1	0	0	0	0	0	0	0	1	6885	1103	39	1		1	GTSE1	22	46704834	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	5131797	46704834	4599732	362	14994											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50720691	50720691	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB2	NM_012401	exon19	c.G3039A	p.R1013R	GGCAAACCTCTGG	.	90	20	122	0	.	211	T	50720691	C	T	50720691	2	4	122	1	0	0	0	0	0	0	0	1	12124	506	18	3		3	PLXNB2	22	50720691	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	4015857	50720691	583875	363	14995											
BMX	660	hgsc.bcm.edu;bcgsc.ca	37	X	15534284	15534284	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BMX	NM_001721	exon5	c.C375T	p.F125F	GTTCTTCGTGGAC	.	89	4	177	0	.	541	T	15534284	C	T	15534284	2	4	122	1	0	0	0	0	0	0	0	1	1473	883	31	1		1	BMX	23	15534284	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10		15534284	139736276	364	14996											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32490308	32490308	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DMD	NM_004006	exon22	c.C2922A	p.I974I	CTCCATGATTTCA	.	156	45	216	0	.	265	T	32490308	G	T	32490308	2	4	122	1	0	0	0	0	0	0	0	1	4580	1280	45	3		3	DMD	23	32490308	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	16956024	32490308	122780252	365	14997											
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35989740	35989740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CXorf22	NM_152632	exon12	c.T2008G	p.L670V	ATAGGCTTAGAGC	.	78	25	130	0	.	131	G	35989740	T	G	35989740	3	3	122	1	0	0	0	0	1	0	0	0	4102	1606	56	5	2054	5	CXorf22	23	35989740	Missense_Mutation	SNP	T	TCGA-EP-A2KA-01A-11D-A183-10	3499432	35989740	119280820	366	14998											
SRPX	8406	hgsc.bcm.edu;bcgsc.ca	37	X	38013812	38013812	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRPX	NM_006307	exon9	c.C1114A	p.R372R	TGTGTCGAAGATC	.	81	4	79	0	.	130	T	38013812	G	T	38013812	2	4	122	1	0	0	0	0	0	0	0	1	15163	1066	37	1		1	SRPX	23	38013812	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2024072	38013812	117256748	367	14999											
CHST7	56548	hgsc.bcm.edu;bcgsc.ca	37	X	46433646	46433646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHST7	NM_019886	exon1	c.G280T	p.G94W	GCTGTCGGGGAGG	.	62	5	100	0	.	133	T	46433646	G	T	46433646	3	4	122	1	0	0	0	0	1	0	0	0	3409	1116	39	1	282	1	CHST7	23	46433646	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	8419834	46433646	108836914	368	15000											
GRIPAP1	56850	hgsc.bcm.edu;bcgsc.ca	37	X	48855662	48855662	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIPAP1	NM_020137	exon3	c.C159T	p.S53S	AGCTTTGCTGAAC	.	137	6	175	0	.	227	A	48855662	G	A	48855662	2	1	122	1	0	0	0	0	0	0	0	1	6789	1310	46	3		3	GRIPAP1	23	48855662	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	2422016	48855662	106414898	369	15001											
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49105132	49105132	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC22	NM_014008	exon12	c.G1368T	p.L456L	AGAACTGCACCAG	.	174	35	260	0	.	130	T	49105132	G	T	49105132	2	4	122	1	0	0	0	0	0	0	0	1	2797	1306	46	3		3	CCDC22	23	49105132	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	249470	49105132	106165428	370	15002											
FOXR2	139628	hgsc.bcm.edu;bcgsc.ca	37	X	55650629	55650629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR2	NM_198451	exon1	c.C485A	p.P162Q	AGGAACCAGACGA	.	86	5	154	0	.	227	A	55650629	C	A	55650629	3	1	122	1	0	0	0	0	1	0	0	0	6032	594	21	3	487	3	FOXR2	23	55650629	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	6545497	55650629	99619931	371	15003											
FAM155B	27112	hgsc.bcm.edu;bcgsc.ca	37	X	68725240	68725240	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM155B	NM_015686	exon1	c.C115A	p.R39R	TCCGAGCGGGCGC	.	55	4	54	0	.	131	A	68725240	C	A	68725240	2	1	122	1	0	0	0	0	0	0	0	1	5466	759	27	1		1	FAM155B	23	68725240	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	13074611	68725240	86545320	372	15004											
SNX12	29934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70282707	70282707	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX12	NM_001256185	exon3	c.C258T	p.S86S	TACCTTGCTATCT	.	87	19	128	0	.	226	A	70282707	G	A	70282707	2	1	122	1	0	0	0	0	0	0	0	1	14883	1310	46	3		3	SNX12	23	70282707	Silent	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	1557467	70282707	84987853	373	15005											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71915637	71915637	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHKA1	NM_001172436	exon4	c.G375A	p.V125V	ATCACCCACTACA	.	886	223	1273	1	.	134	T	71915637	C	T	71915637	2	4	122	1	0	0	0	0	0	0	0	1	11843	581	21	3		3	PHKA1	23	71915637	Silent	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	1632930	71915637	83354923	374	15006											
ALG13	79868	hgsc.bcm.edu;bcgsc.ca	37	X	110980011	110980011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALG13	NM_001099922	exon23	c.G2599T	p.G867C	TCTAACGGTGCAG	.	166	7	262	0	.	130	T	110980011	G	T	110980011	3	4	122	1	0	0	0	0	1	0	0	0	515	1116	39	1	2831	1	ALG13	23	110980011	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	39064374	110980011	44290549	375	15007											
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120181981	120181981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLUD2	NM_012084	exon1	c.G443A	p.G148E	GCAAGGGAGGTAT	.	147	38	246	0	.	131	A	120181981	G	A	120181981	3	1	122	1	0	0	0	0	1	0	0	0	6477	1174	41	3	445	3	GLUD2	23	120181981	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	9201970	120181981	35088579	376	15008											
ZIC3	7547	hgsc.bcm.edu;bcgsc.ca	37	X	136649847	136649847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZIC3	NM_003413	exon1	c.C997A	p.P333T	CCCTTCCCGGGCT	.	125	5	199	0	.	195	A	136649847	C	A	136649847	3	1	122	1	0	0	0	0	1	0	0	0	17677	623	22	3	999	3	ZIC3	23	136649847	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	16467866	136649847	18620713	377	15009											
SLITRK2	84631	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144906050	144906050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLITRK2	NM_001144005	exon5	c.C2107A	p.Q703K	TACATGCAGAAGG	.	101	23	114	1	.	136	A	144906050	C	A	144906050	3	1	122	1	0	0	0	0	1	0	0	0	14743	711	25	3	2109	3	SLITRK2	23	144906050	Missense_Mutation	SNP	C	TCGA-EP-A2KA-01A-11D-A183-10	8256203	144906050	10364510	378	15010											
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153032892	153032892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB3	NM_001163257	exon4	c.G679T	p.A227S	CCCCTGGCCATCC	.	66	10	50	0	.	130	T	153032892	G	T	153032892	3	4	122	1	0	0	0	0	1	0	0	0	12125	1203	42	3	734	3	PLXNB3	23	153032892	Missense_Mutation	SNP	G	TCGA-EP-A2KA-01A-11D-A183-10	8126842	153032892	2237668	379	15011											
PIK3CD	5293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	9781914	9781914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon16	c.A2051G	p.K684R	TGATGAAGCAGGT	.	28	4	33	0	.	1311	G	9781914	A	G	9781914	3	3	123	1	0	0	0	0	1	0	0	0	11915	72	3	2	2105	2	PIK3CD	1	9781914	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		9781914	239468707	1	15012											
PIK3CD	5293	hgsc.bcm.edu;bcgsc.ca	37	1	9782115	9782115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon17	c.A2138G	p.E713G	CCAAGGAGCTGAT	.	82	4	147	0	.	1311	G	9782115	A	G	9782115	3	3	123	1	0	0	0	0	1	0	0	0	11915	304	11	2	2196	2	PIK3CD	1	9782115	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	201	9782115	239468506	2	15013											
AGMAT	79814	hgsc.bcm.edu;bcgsc.ca	37	1	15901266	15901266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGMAT	NM_024758	exon6	c.C971A	p.P324Q	TCATACGGTGGTG	.	64	4	83	0	.	91	T	15901266	G	T	15901266	3	4	123	1	0	0	0	0	1	0	0	0	385	1116	39	1	95	1	AGMAT	1	15901266	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	6119151	15901266	233349355	3	15014											
KIF17	57576	hgsc.bcm.edu;bcgsc.ca	37	1	21014288	21014288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF17	NM_020816	exon8	c.G1531T	p.D511Y	AGACATCGTCACT	.	73	4	124	0	.	94	A	21014288	C	A	21014288	3	1	123	1	0	0	0	0	1	0	0	0	8279	884	31	1	1590	1	KIF17	1	21014288	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	5113022	21014288	228236333	4	15015											
USP48	84196	hgsc.bcm.edu;bcgsc.ca	37	1	22084236	22084236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP48	NM_001032730	exon2	c.G175T	p.G59C	GCTCACCAATACC	.	78	5	104	0	.	659	A	22084236	C	A	22084236	3	1	123	1	0	0	0	0	1	0	0	0	17076	594	21	3	3044	3	USP48	1	22084236	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1069948	22084236	227166385	5	15016											
HSPG2	3339	hgsc.bcm.edu;bcgsc.ca	37	1	22180694	22180694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSPG2	NM_005529	exon50	c.A6431G	p.Y2144C	GGGGTGTAGCTGG	.	58	4	109	0	.	141	C	22180694	T	C	22180694	3	2	123	1	0	0	0	0	1	0	0	0	7430	1638	57	2	6936	2	HSPG2	1	22180694	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	96458	22180694	227069927	6	15017											
CDC42	998	hgsc.bcm.edu;bcgsc.ca	37	1	22417973	22417973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDC42	NM_001791	exon6	c.C539T	p.P180L	AGCCTCCAGAACC	.	77	4	167	0	.	1084	T	22417973	C	T	22417973	3	4	123	1	0	0	0	0	1	0	0	0	3071	594	21	3	651	3	CDC42	1	22417973	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	237279	22417973	226832648	7	15018											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106505	27106506	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARID1A	NM_006015	exon20	c.6116_6117insT	p.Q2039fs	AGGACCAAGGGGT	.	171	126	276	0	.	584	T	27106506	-	T	27106505	7	5	123	1	0	1	1	0	0	0	0	0	913	130	5	0	6194	0	ARID1A	1	27106505	Frame_Shift_Ins	INS	-	TCGA-EP-A2KB-01A-11D-A183-10	4688532	27106505	222144116	8	15019											
DNAJC8	22826	hgsc.bcm.edu;bcgsc.ca	37	1	28536549	28536549	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJC8	NM_014280	exon5	c.G333A	p.L111L	CTGATCCAGTAGC	.	74	4	132	0	.	90	T	28536549	C	T	28536549	2	4	123	1	0	0	0	0	0	0	0	1	4655	581	21	3		3	DNAJC8	1	28536549	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1430044	28536549	220714072	9	15020											
HCRTR1	3061	hgsc.bcm.edu;bcgsc.ca	37	1	32087137	32087137	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HCRTR1	NM_001525	exon6	c.C682T	p.L228L	GCCCCACTGGGCC	.	75	4	115	0	.	523	T	32087137	C	T	32087137	2	4	123	1	0	0	0	0	0	0	0	1	7001	564	20	3		3	HCRTR1	1	32087137	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	3550588	32087137	217163484	10	15021											
KIAA0319L	79932	hgsc.bcm.edu;bcgsc.ca	37	1	35928256	35928256	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0319L	NM_024874	exon8	c.T1260C	p.S420S	TGGCAAAGAGATC	.	56	4	96	0	.	92	G	35928256	A	G	35928256	2	3	123	1	0	0	0	0	0	0	0	1	8169	59	3	2		2	KIAA0319L	1	35928256	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3841119	35928256	213322365	11	15022											
KLF17	128209	hgsc.bcm.edu;bcgsc.ca	37	1	44595054	44595054	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLF17	NM_173484	exon2	c.C111T	p.N37N	CTTGAACATGTCT	.	84	4	144	0	.	92	T	44595054	C	T	44595054	2	4	123	1	0	0	0	0	0	0	0	1	8345	477	17	3		3	KLF17	1	44595054	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	8666798	44595054	204655567	12	15023											
CYP4A11	1579	hgsc.bcm.edu;bcgsc.ca	37	1	47406949	47406949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP4A11	NM_000778	exon1	c.T157C	p.C53R	GAGGGCACGGGAA	.	71	4	159	0	.	94	G	47406949	A	G	47406949	3	3	123	1	0	0	0	0	1	0	0	0	4183	159	6	2	1450	2	CYP4A11	1	47406949	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2811895	47406949	201843672	13	15024											
TTC39A	22996	hgsc.bcm.edu;bcgsc.ca	37	1	51767296	51767296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39A	NM_001144832	exon12	c.A1013G	p.K338R	GACATCTTCCACT	.	44	4	100	0	.	23	C	51767296	T	C	51767296	3	2	123	1	0	0	0	0	1	0	0	0	16704	1609	56	2	760	2	TTC39A	1	51767296	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	4360347	51767296	197483325	14	15025											
LEPR	3953	hgsc.bcm.edu;bcgsc.ca	37	1	66067256	66067256	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LEPR	NM_001003680	exon9	c.T1176C	p.T392T	AGTTACTTTTTTC	.	90	4	166	0	.	91	C	66067256	T	C	66067256	2	2	123	1	0	0	0	0	0	0	0	1	8728	1596	56	2		2	LEPR	1	66067256	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	14299960	66067256	183183365	15	15026											
WLS	79971	hgsc.bcm.edu;bcgsc.ca	37	1	68610266	68610266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WLS	NM_024911	exon10	c.T1348C	p.F450L	CGATGAAGAAGAT	.	62	4	111	0	.	90	G	68610266	A	G	68610266	3	3	123	1	0	0	0	0	1	0	0	0	17373	72	3	2	415	2	WLS	1	68610266	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2543010	68610266	180640355	16	15027											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	79404924	79404924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELTD1	NM_022159	exon4	c.C345A	p.C115X	TAAATGGCAGTTT	.	278	219	450	1	.	24	T	79404924	G	T	79404924	4	4	123	1	0	0	0	0	0	1	0	0	5084	1195	42	3	1775	3	ELTD1	1	79404924	Nonsense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	10794658	79404924	169845697	17	15028											
CLCA2	9635	hgsc.bcm.edu;bcgsc.ca	37	1	86900325	86900325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCA2	NM_006536	exon6	c.C869T	p.P290L	GCTTTCCCATGAA	.	89	4	131	0	.	155	T	86900325	C	T	86900325	3	4	123	1	0	0	0	0	1	0	0	0	3458	623	22	3	891	3	CLCA2	1	86900325	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	7495401	86900325	162350296	18	15029											
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89843997	89843997	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GBP6	NM_198460	exon5	c.A450G	p.E150E	CACAGAACTAATT	.	64	4	95	0	.	92	G	89843997	A	G	89843997	2	3	123	1	0	0	0	0	0	0	0	1	6278	40	2	2		2	GBP6	1	89843997	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2943672	89843997	159406624	19	15030											
ABCA4	24	hgsc.bcm.edu;bcgsc.ca	37	1	94517230	94517230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA4	NM_000350	exon17	c.G2612T	p.W871L	AAGTACCAAGGAA	.	102	5	154	0	.	162	A	94517230	C	A	94517230	3	1	123	1	0	0	0	0	1	0	0	0	34	595	21	3	4345	3	ABCA4	1	94517230	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4673233	94517230	154733391	20	15031											
CELSR2	1952	hgsc.bcm.edu;bcgsc.ca	37	1	109794818	109794818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CELSR2	NM_001408	exon1	c.A2117G	p.N706S	ACGCCAACACCCA	.	61	4	99	0	.	526	G	109794818	A	G	109794818	3	3	123	1	0	0	0	0	1	0	0	0	3222	43	2	2	2119	2	CELSR2	1	109794818	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	15277588	109794818	139455803	21	15032											
SLC16A4	9122	hgsc.bcm.edu;bcgsc.ca	37	1	110918150	110918150	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC16A4	NM_004696	exon8	c.A1266G	p.T422T	GTTTACTGTAGAA	.	85	5	169	0	.	93	C	110918150	T	C	110918150	2	2	123	1	0	0	0	0	0	0	0	1	14410	1567	55	2		2	SLC16A4	1	110918150	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1123332	110918150	138332471	22	15033											
SPAG17	200162	hgsc.bcm.edu;bcgsc.ca	37	1	118550817	118550817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPAG17	NM_206996	exon31	c.G4437T	p.E1479D	AGGACCCTCGGCT	.	77	4	78	0	.	158	A	118550817	C	A	118550817	3	1	123	1	0	0	0	0	1	0	0	0	14979	680	24	3	2306	3	SPAG17	1	118550817	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	7632667	118550817	130699804	23	15034											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153906108	153906108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DENND4B	NM_014856	exon20	c.C3181T	p.L1061F	GTTGGAGGCGGGC	.	379	219	220	0	.	69	A	153906108	G	A	153906108	3	1	123	1	0	0	0	0	1	0	0	0	4434	1000	35	3	1345	3	DENND4B	1	153906108	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	35355291	153906108	95344513	24	15035											
CCDC19	25790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159846466	159846466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC19	NM_012337	exon10	c.G1232A	p.R411Q	TTCTTCCGCGCAT	.	1191	239	851	1	.	91	T	159846466	C	T	159846466	3	4	123	1	0	0	0	0	1	0	0	0	2795	652	23	1	435	1	CCDC19	1	159846466	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	5940358	159846466	89404155	25	15036											
F5	2153	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169515769	169515769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	F5	NM_000130	exon11	c.A1673G	p.Y558C	TCAAGGTACCAGC	.	239	22	153	1	.	157	C	169515769	T	C	169515769	3	2	123	1	0	0	0	0	1	0	0	0	5348	1638	57	2	5061	2	F5	1	169515769	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	9669303	169515769	79734852	26	15037											
CEP350	9857	hgsc.bcm.edu;bcgsc.ca	37	1	180013222	180013222	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP350	NM_014810	exon21	c.A4536G	p.E1512E	TAAAGAAGGGACC	.	96	5	70	0	.	26	G	180013222	A	G	180013222	2	3	123	1	0	0	0	0	0	0	0	1	3254	69	3	2		2	CEP350	1	180013222	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	10497453	180013222	69237399	27	15038											
DHX9	1660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182847265	182847265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DHX9	NM_001357	exon20	c.C2308G	p.P770A	GTACGGCCTGGAT	.	256	27	174	1	.	92	G	182847265	C	G	182847265	3	3	123	1	0	0	0	0	1	0	0	0	4516	739	26	4	2382	4	DHX9	1	182847265	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	2834043	182847265	66403356	28	15039											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207890960	207890960	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CR1L	NM_175710	exon11	c.C1566T	p.I522I	CACCATCCGCCGC	.	546	77	361	0	.	46	T	207890960	C	T	207890960	2	4	123	1	0	0	0	0	0	0	0	1	3841	845	30	3		3	CR1L	1	207890960	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	25043695	207890960	41359661	29	15040											
PROX1	5629	hgsc.bcm.edu;bcgsc.ca	37	1	214170676	214170676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PROX1	NM_001270616	exon2	c.G798T	p.S266S	TGATTCGGAAAAT	.	88	4	69	0	.	654	T	214170676	G	T	214170676	2	4	123	1	0	0	0	0	0	0	0	1	12560	1103	39	1		1	PROX1	1	214170676	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	6279716	214170676	35079945	30	15041											
OR2T3	343173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248637025	248637025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2T3	NM_001005495	exon1	c.A374G	p.Y125C	TGGCCTATGACCG	.	787	209	545	0	.	69	G	248637025	A	G	248637025	3	3	123	1	0	0	0	0	1	0	0	0	11023	449	16	2	376	2	OR2T3	1	248637025	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	34466349	248637025	613596	31	15042											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1440156	1440156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TPO	NM_175719	exon5	c.G482T	p.R161I	ACAACAGGTATTG	.	105	58	119	0	.	332	T	1440156	G	T	1440156	3	4	123	1	0	0	0	0	1	0	0	0	16407	1014	35	3	496	3	TPO	2	1440156	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10		1440156	241759217	32	15043											
GTF3C2	2976	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	27550059	27550059	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTF3C2	NM_001521	exon19	c.C2502T	p.N834N	AGCCTCCAGCTGC	.	44	4	64	0	.	92	A	27550059	C	A	27550059	2	1	123	1	0	0	0	0	0	0	0	1	6873	581	21	3		3	GTF3C2	2	27550059	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	26109903	27550059	215649314	33	15044											
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27803792	27803792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf16	NM_032266	exon1	c.T4353C	p.P1451P	CAGACCTCTTCGA	.	73	4	68	0	.	67	C	27803792	T	C	27803792	2	2	123	1	0	0	0	0	0	0	0	1	2157	1538	54	2		2	C2orf16	2	27803792	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	253733	27803792	215395581	34	15045											
RGPD4	285190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108487607	108487607	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RGPD4	NM_182588	exon20	c.A3147G	p.E1049E	AGTAGAACTTGTA	.	124	47	137	0	.	2	G	108487607	A	G	108487607	2	3	123	1	0	0	0	0	0	0	0	1	13288	40	2	2		2	RGPD4	2	108487607	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	80683815	108487607	134711766	35	15046											
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128051105	128051105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERCC3	NM_000122	exon2	c.C218T	p.S73F	GGCCTGGAGGTGT	.	172	54	174	0	.	723	A	128051105	G	A	128051105	3	1	123	1	0	0	0	0	1	0	0	0	5214	1174	41	3	2186	3	ERCC3	2	128051105	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	19563498	128051105	115148268	36	15047											
GALNT13	114805	hgsc.bcm.edu;bcgsc.ca	37	2	155295139	155295139	+	Silent	SNP	C	C	A	rs182009673	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GALNT13	NM_052917	exon12	c.C1431A	p.T477T	CCGAACCGATGAC	.	117	5	141	0	C|0.999;T|0.001	95	A	155295139	C	A	155295139	2	1	123	1	0	0	0	0	0	0	0	1	6211	639	23	1		1	GALNT13	2	155295139	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	27244034	155295139	87904234	37	15048											
OSBPL6	114880	hgsc.bcm.edu;bcgsc.ca	37	2	179197627	179197627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OSBPL6	NM_001201482	exon8	c.G516T	p.W172C	TGCATGGGTCTCC	.	122	5	126	0	.	69	T	179197627	G	T	179197627	3	4	123	1	0	0	0	0	1	0	0	0	11281	1241	43	3	581	3	OSBPL6	2	179197627	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	23902488	179197627	64001746	38	15049											
NAB1	4664	hgsc.bcm.edu;bcgsc.ca	37	2	191548468	191548468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAB1	NM_005966	exon7	c.G1010T	p.G337V	AGGATGGGTTTCC	.	80	5	91	0	.	226	T	191548468	G	T	191548468	3	4	123	1	0	0	0	0	1	0	0	0	10131	1232	43	3	1024	3	NAB1	2	191548468	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	12350841	191548468	51650905	39	15050											
LANCL1	10314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211341073	211341073	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LANCL1	NM_001136574	exon2	c.C48G	p.S16S	GGCCAGGGATTTG	.	322	163	374	0	.	90	C	211341073	G	C	211341073	2	2	123	1	0	0	0	0	0	0	0	1	8620	1219	43	4		4	LANCL1	2	211341073	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	19792605	211341073	31858300	40	15051											
ABCA12	26154	hgsc.bcm.edu;bcgsc.ca	37	2	215797448	215797448	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA12	NM_173076	exon53	c.C7698A	p.A2566A	GTCTTTGGCAAAG	.	96	4	106	0	.	99	T	215797448	G	T	215797448	2	4	123	1	0	0	0	0	0	0	0	1	30	1335	47	3		3	ABCA12	2	215797448	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	4456375	215797448	27401925	41	15052											
SERPINE2	5270	hgsc.bcm.edu;bcgsc.ca	37	2	224856708	224856708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SERPINE2	NM_001136530	exon4	c.A533G	p.D178G	AGATTGTCAATCA	.	59	4	55	0	.	290	C	224856708	T	C	224856708	3	2	123	1	0	0	0	0	1	0	0	0	14112	1667	58	2	723	2	SERPINE2	2	224856708	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	9059260	224856708	18342665	42	15053											
COL4A4	1286	hgsc.bcm.edu;bcgsc.ca	37	2	227895215	227895215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL4A4	NM_000092	exon41	c.C3917T	p.P1306L	GGGCCTGGTGGGC	.	72	4	77	0	.	142	A	227895215	G	A	227895215	3	1	123	1	0	0	0	0	1	0	0	0	3693	1348	47	3	1187	3	COL4A4	2	227895215	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	3038507	227895215	15304158	43	15054											
NPPC	4880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	232790144	232790144	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPPC	NM_024409	exon2	c.G372A	p.L124L	ACATCCCAGGCCG	.	110	22	90	0	.	90	T	232790144	C	T	232790144	2	4	123	1	0	0	0	0	0	0	0	1	10593	581	21	3		3	NPPC	2	232790144	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4894929	232790144	10409229	44	15055											
FARP2	9855	hgsc.bcm.edu;bcgsc.ca	37	2	242432429	242432429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FARP2	NM_014808	exon25	c.T2873C	p.L958S	TCTGTTTGTTCTT	.	98	4	81	0	.	93	C	242432429	T	C	242432429	3	2	123	1	0	0	0	0	1	0	0	0	5677	1821	63	2	2967	2	FARP2	2	242432429	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	9642285	242432429	766944	45	15056											
SUMF1	285362	hgsc.bcm.edu;bcgsc.ca	37	3	4458810	4458810	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SUMF1	NM_001164674	exon6	c.765+2T>C	.	TTACTCACAGGCG	.	77	4	83	0	.	91	G	4458810	A	G	4458810	5	3	123	1	0	0	0	0	0	0	1	0	15382	173	6	2	298	2	SUMF1	3	4458810	Splice_Site	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		4458810	193563620	46	15057											
KCNH8	131096	hgsc.bcm.edu;bcgsc.ca	37	3	19575099	19575099	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCNH8	NM_144633	exon16	c.T2832C	p.Y944Y	TGCTTATACCCAA	.	120	5	125	0	.	524	C	19575099	T	C	19575099	2	2	123	1	0	0	0	0	0	0	0	1	8038	1413	49	2		2	KCNH8	3	19575099	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	15116289	19575099	178447331	47	15058											
UBP1	7342	hgsc.bcm.edu;bcgsc.ca	37	3	33444345	33444345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBP1	NM_014517	exon9	c.C979A	p.P327T	GCGCTGGGGAAGG	.	173	7	184	0	.	537	T	33444345	G	T	33444345	3	4	123	1	0	0	0	0	1	0	0	0	16892	1232	43	3	675	3	UBP1	3	33444345	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	13869246	33444345	164578085	48	15059											
PDCD6IP	10015	broad.mit.edu;bcgsc.ca	37	3	33870347	33870347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDCD6IP	NM_001162429	exon7	c.G735T	p.E245D	CCAGGAGGTGTTC	.	1058	49	1129	2	.	228	T	33870347	G	T	33870347	3	4	123	1	0	0	0	0	1	0	0	0	11624	991	35	3	761	3	PDCD6IP	3	33870347	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	426002	33870347	164152083	49	15060											
ULK4	54986	hgsc.bcm.edu;bcgsc.ca	37	3	41860960	41860960	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ULK4	NM_017886	exon19	c.T1803C	p.V601V	CAAGGGAACAGCC	.	60	4	67	0	.	297	G	41860960	A	G	41860960	2	3	123	1	0	0	0	0	0	0	0	1	16975	233	9	2		2	ULK4	3	41860960	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	7990613	41860960	156161470	50	15061											
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48625362	48625362	+	Silent	SNP	T	T	C	rs201566458		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL7A1	NM_000094	exon21	c.A2721G	p.E907E	GGACTGTTCCTGG	.	69	4	60	0	.	160	C	48625362	T	C	48625362	2	2	123	1	0	0	0	0	0	0	0	1	3704	1722	60	2		2	COL7A1	3	48625362	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	6764402	48625362	149397068	51	15062											
DALRD3	55152	hgsc.bcm.edu;bcgsc.ca	37	3	49053492	49053492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DALRD3	NM_001009996	exon10	c.A1357G	p.I453V	GGAGGATACTGTT	.	88	4	93	0	.	90	C	49053492	T	C	49053492	3	2	123	1	0	0	0	0	1	0	0	0	4229	1406	49	2	286	2	DALRD3	3	49053492	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	428130	49053492	148968938	52	15063											
RNF123	63891	hgsc.bcm.edu;bcgsc.ca	37	3	49735904	49735904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF123	NM_022064	exon8	c.C515T	p.A172V	CCTATGCCTATGA	.	90	5	115	0	.	584	T	49735904	C	T	49735904	3	4	123	1	0	0	0	0	1	0	0	0	13433	739	26	3	541	3	RNF123	3	49735904	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	682412	49735904	148286526	53	15064											
DOCK3	1795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51297588	51297588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK3	NM_004947	exon23	c.C2186A	p.A729D	TTCAGGCCTTGGA	.	182	8	193	0	.	22	A	51297588	C	A	51297588	3	1	123	1	0	0	0	0	1	0	0	0	4688	753	26	3	2276	3	DOCK3	3	51297588	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1561684	51297588	146724842	54	15065											
VPRBP	9730	hgsc.bcm.edu;bcgsc.ca	37	3	51456168	51456168	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPRBP	NM_014703	exon15	c.T3240C	p.C1080C	GTTGTGACAGTTA	.	90	4	94	0	.	92	G	51456168	A	G	51456168	2	3	123	1	0	0	0	0	0	0	0	1	17182	273	10	2		2	VPRBP	3	51456168	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	158580	51456168	146566262	55	15066											
ERC2	26059	hgsc.bcm.edu;bcgsc.ca	37	3	56207475	56207475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERC2	NM_015576	exon4	c.A1148G	p.K383R	CCTACCTTCATTT	.	93	4	89	0	.	24	C	56207475	T	C	56207475	3	2	123	1	0	0	0	0	1	0	0	0	5211	1623	56	2	1771	2	ERC2	3	56207475	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	4751307	56207475	141814955	56	15067											
CADM2	253559	hgsc.bcm.edu;bcgsc.ca	37	3	85932563	85932563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.361delA	p.K121fs	CCTGTCAAAACTT	.	126	29	161	0	.	228	-	85932563	A	-	85932563	7	5	123	1	0	1	0	1	0	0	0	0	2567	131	5	0	415	0	CADM2	3	85932563	Frame_Shift_Del	DEL	A	TCGA-EP-A2KB-01A-11D-A183-10	29725088	85932563	112089867	57	15068	82	2									
CADM2	253559	hgsc.bcm.edu;bcgsc.ca	37	3	85932567	85932567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.C365T	p.T122I	TCAAAACTTCCAA	.	121	31	157	0	.	228	T	85932567	C	T	85932567	3	4	123	1	0	0	0	0	1	0	0	0	2567	565	20	3	419	3	CADM2	3	85932567	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4	85932567	112089863	58	15069	82	2									
PLCXD2	257068	hgsc.bcm.edu;bcgsc.ca	37	3	111427204	111427204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLCXD2	NM_001185106	exon2	c.C595A	p.L199M	TTGACGCTGCGAA	.	118	5	141	0	.	227	A	111427204	C	A	111427204	3	1	123	1	0	0	0	0	1	0	0	0	12042	796	28	3	601	3	PLCXD2	3	111427204	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	25494637	111427204	86595226	59	15070											
SLC15A2	6565	hgsc.bcm.edu;bcgsc.ca	37	3	121647383	121647383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC15A2	NM_021082	exon15	c.A1322G	p.E441G	TGATAGAGTCCAT	.	100	6	126	0	.	91	G	121647383	A	G	121647383	3	3	123	1	0	0	0	0	1	0	0	0	14399	304	11	2	1380	2	SLC15A2	3	121647383	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	10220179	121647383	76375047	60	15071											
PRR23A	729627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138725110	138725110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001134659	exon1	c.A1G	p.M1V	TGCCCATAGCCTC	.	12	8	19	0	.	.	C	138725110	T	C	138725110	3	2	123	1	0	0	0	0	1	0	0	0	12594	1420	49	2	803	2	PRR23A	3	138725110	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	17077727	138725110	59297320	61	15072											
ATR	545	hgsc.bcm.edu;bcgsc.ca	37	3	142281918	142281918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATR	NM_001184	exon4	c.G326T	p.R109L	GCAATCCGCAGAA	.	83	4	87	0	.	1139	A	142281918	C	A	142281918	3	1	123	1	0	0	0	0	1	0	0	0	1204	652	23	1	7784	1	ATR	3	142281918	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	3556808	142281918	55740512	62	15073											
MED12L	116931	hgsc.bcm.edu;bcgsc.ca	37	3	151107911	151107911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MED12L	NM_053002	exon36	c.T5491C	p.S1831P	AACCAATCTCTTA	.	55	4	52	0	.	576	C	151107911	T	C	151107911	3	2	123	1	0	0	0	0	1	0	0	0	9429	1435	50	2	5633	2	MED12L	3	151107911	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	8825993	151107911	46914519	63	15074											
GFM1	85476	hgsc.bcm.edu;bcgsc.ca	37	3	158364696	158364696	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFM1	NM_024996	exon4	c.C532A	p.R178R	TTGGACCGAATGG	.	92	4	93	0	.	93	A	158364696	C	A	158364696	2	1	123	1	0	0	0	0	0	0	0	1	6341	644	23	1		1	GFM1	3	158364696	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	7256785	158364696	39657734	64	15075											
FETUB	26998	hgsc.bcm.edu;bcgsc.ca	37	3	186358341	186358341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FETUB	NM_014375	exon1	c.T92C	p.L31P	CGGCTCTGCTCTC	.	129	6	174	0	.	92	C	186358341	T	C	186358341	3	2	123	1	0	0	0	0	1	0	0	0	5821	1580	55	2	94	2	FETUB	3	186358341	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	27993645	186358341	11664089	65	15076											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195517320	195517320	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC4	NM_018406	exon2	c.C1131G	p.T377T	GGATGAGGTGGTT	.	377	117	394	0	.	90	C	195517320	G	C	195517320	2	2	123	1	0	0	0	0	0	0	0	1	9978	987	35	4		4	MUC4	3	195517320	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	9158979	195517320	2505110	66	15077											
JAKMIP1	152789	hgsc.bcm.edu;bcgsc.ca	37	4	6087187	6087187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JAKMIP1	NM_001099433	exon4	c.C794A	p.P265Q	CCGGGCGGGAGCT	.	63	4	95	0	.	292	T	6087187	G	T	6087187	3	4	123	1	0	0	0	0	1	0	0	0	7940	1116	39	1	1848	1	JAKMIP1	4	6087187	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10		6087187	185067089	67	15078											
SLC34A2	10568	hgsc.bcm.edu;bcgsc.ca	37	4	25664190	25664190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC34A2	NM_001177998	exon2	c.G68A	p.G23D	CCGCAGGTCAGCA	.	90	4	124	0	.	95	A	25664190	G	A	25664190	3	1	123	1	0	0	0	0	1	0	0	0	14568	1261	44	3	70	3	SLC34A2	4	25664190	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	19577003	25664190	165490086	68	15079											
SEL1L3	23231	hgsc.bcm.edu;bcgsc.ca	37	4	25849271	25849271	+	Silent	SNP	G	G	T	rs200467510	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_015187	exon2	c.C378A	p.P126P	GTACACGGGAATG	.	97	4	172	0	G|0.996;A|0.004	.	T	25849271	G	T	25849271	2	4	123	1	0	0	0	0	0	0	0	1	14012	1103	39	1		1	SEL1L3	4	25849271	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	185081	25849271	165305005	69	15080											
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39910134	39910134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001100399	exon11	c.C1114A	p.P372T	CTTCTGGATCATG	.	68	4	92	0	.	.	T	39910134	G	T	39910134	3	4	123	1	0	0	0	0	1	0	0	0	11691	1174	41	3	3024	3	PDS5A	4	39910134	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	14060863	39910134	151244142	70	15081											
RBM47	54502	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40434757	40434757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM47	NM_001098634	exon6	c.G1453C	p.D485H	CTGGGTCTGGCTG	.	168	129	247	1	.	25	G	40434757	C	G	40434757	3	3	123	1	0	0	0	0	1	0	0	0	13141	913	32	4	336	4	RBM47	4	40434757	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	524623	40434757	150719519	71	15082											
DCUN1D4	23142	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	52740446	52740446	+	Missense_Mutation	SNP	G	G	T	rs142966675		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	DCUN1D4,NS,carcinoma,0	DCUN1D4	NM_015115	exon4	c.G146T	p.R49L	GTCTGCGGTCTTG	.	32	4	39	0	G|1.000;T|0.000	92	T	52740446	G	T	52740446	3	4	123	1	0	0	0	0	1	0	0	0	4316	1116	39	1	160	1	DCUN1D4	4	52740446	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	12305689	52740446	138413830	72	15083											
UBA6	55236	hgsc.bcm.edu;bcgsc.ca	37	4	68534270	68534270	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBA6	NM_018227	exon9	c.G792T	p.T264T	CTTACCCGTTATT	.	114	5	153	0	.	90	A	68534270	C	A	68534270	2	1	123	1	0	0	0	0	0	0	0	1	16829	666	23	1		1	UBA6	4	68534270	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	15793824	68534270	122620006	73	15084											
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	4	77255317	77255317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC158	NM_001042784	exon18	c.T2668C	p.S890P	TTGTAGAGTGCTG	.	124	5	174	0	.	96	G	77255317	A	G	77255317	3	3	123	1	0	0	0	0	1	0	0	0	2790	304	11	2	701	2	CCDC158	4	77255317	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	8721047	77255317	113898959	74	15085											
SHROOM3	57619	hgsc.bcm.edu;bcgsc.ca	37	4	77660862	77660862	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM3	NM_020859	exon5	c.T1536C	p.A512A	GATGGCTACCATT	.	54	4	93	0	.	93	C	77660862	T	C	77660862	2	2	123	1	0	0	0	0	0	0	0	1	14295	1509	53	2		2	SHROOM3	4	77660862	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	405545	77660862	113493414	75	15086											
FRAS1	80144	hgsc.bcm.edu;bcgsc.ca	37	4	79455681	79455681	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRAS1	NM_025074	exon71	c.C11004A	p.L3668L	TCAGCTCTGCAAT	.	79	4	139	0	.	68	A	79455681	C	A	79455681	2	1	123	1	0	0	0	0	0	0	0	1	6042	900	32	3		3	FRAS1	4	79455681	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1794819	79455681	111698595	76	15087											
CDS1	1040	hgsc.bcm.edu;bcgsc.ca	37	4	85562071	85562071	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDS1	NM_001263	exon10	c.A960G	p.E320E	GACAGAATGTGAG	.	98	4	167	0	.	155	G	85562071	A	G	85562071	2	3	123	1	0	0	0	0	0	0	0	1	3177	98	4	2		2	CDS1	4	85562071	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	6106390	85562071	105592205	77	15088											
KLHL8	57563	hgsc.bcm.edu;bcgsc.ca	37	4	88098001	88098001	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHL8	NM_020803	exon6	c.T1116C	p.G372G	ATGTCCACCTACT	.	97	4	156	0	.	90	G	88098001	A	G	88098001	2	3	123	1	0	0	0	0	0	0	0	1	8395	146	6	2		2	KLHL8	4	88098001	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2535930	88098001	103056275	78	15089											
DAPP1	27071	hgsc.bcm.edu;bcgsc.ca	37	4	100756811	100756811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DAPP1	NM_014395	exon2	c.G133T	p.A45S	CATGCTGCTGAAG	.	100	5	124	0	.	93	T	100756811	G	T	100756811	3	4	123	1	0	0	0	0	1	0	0	0	4239	1319	46	3	139	3	DAPP1	4	100756811	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	12658810	100756811	90397465	79	15090											
TBCK	93627	hgsc.bcm.edu;bcgsc.ca	37	4	107154107	107154107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBCK	NM_001163436	exon17	c.G1627A	p.V543M	AATACACAAGATC	.	87	4	195	0	.	336	T	107154107	C	T	107154107	3	4	123	1	0	0	0	0	1	0	0	0	15633	478	17	3	1094	3	TBCK	4	107154107	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	6397296	107154107	84000169	80	15091											
SEC24B	10427	hgsc.bcm.edu;bcgsc.ca	37	4	110453794	110453794	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24B	NM_006323	exon21	c.3391-1G>T	.	TTTTCAGGGTGCA	.	49	4	85	0	.	137	T	110453794	G	T	110453794	5	4	123	1	0	0	0	0	0	0	1	0	13995	1014	35	3	3472	3	SEC24B	4	110453794	Splice_Site	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	3299687	110453794	80700482	81	15092											
AP1AR	55435	hgsc.bcm.edu;bcgsc.ca	37	4	113174413	113174413	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP1AR	NM_001128426	exon2	c.132+1G>A	.	ATAGAGGTAAGTA	.	83	5	126	0	.	90	A	113174413	G	A	113174413	5	1	123	1	0	0	0	0	0	0	1	0	730	1275	44	3	139	3	AP1AR	4	113174413	Splice_Site	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2720619	113174413	77979863	82	15093											
ANK2	287	hgsc.bcm.edu;bcgsc.ca	37	4	114279607	114279607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANK2	NM_001148	exon38	c.C9833A	p.P3278Q	CTTCCCCAGAAGA	.	116	6	146	0	.	583	A	114279607	C	A	114279607	3	1	123	1	0	0	0	0	1	0	0	0	621	594	21	3	10048	3	ANK2	4	114279607	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1105194	114279607	76874669	83	15094											
PRSS12	8492	hgsc.bcm.edu;bcgsc.ca	37	4	119203115	119203115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRSS12	NM_003619	exon13	c.G2604T	p.W868C	TTTTATCCAAGGT	.	64	4	81	0	.	91	A	119203115	C	A	119203115	3	1	123	1	0	0	0	0	1	0	0	0	12615	856	30	3	27	3	PRSS12	4	119203115	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4923508	119203115	71951161	84	15095											
SEC24D	9871	hgsc.bcm.edu;bcgsc.ca	37	4	119666159	119666159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24D	NM_014822	exon14	c.A1764G	p.E588E	TGGTGCTTCAGCA	.	170	7	252	0	.	90	C	119666159	T	C	119666159	2	2	123	1	0	0	0	0	0	0	0	1	13997	1606	56	2		2	SEC24D	4	119666159	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	463044	119666159	71488117	85	15096											
MYOZ2	51778	hgsc.bcm.edu;bcgsc.ca	37	4	120079175	120079175	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOZ2	NM_016599	exon4	c.247-2A>G	.	AAATACAGCACAG	.	75	4	146	0	.	90	G	120079175	A	G	120079175	5	3	123	1	0	0	0	0	0	0	1	0	10096	202	7	2	255	2	MYOZ2	4	120079175	Splice_Site	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	413016	120079175	71075101	86	15097											
MMAA	166785	hgsc.bcm.edu;bcgsc.ca	37	4	146575291	146575291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMAA	NM_172250	exon6	c.C965A	p.P322Q	GGAAACCAAAGGT	.	76	4	94	0	.	91	A	146575291	C	A	146575291	3	1	123	1	0	0	0	0	1	0	0	0	9639	594	21	3	983	3	MMAA	4	146575291	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	26496116	146575291	44578985	87	15098											
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154524546	154524546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0922	NM_001131007	exon24	c.A2731G	p.S911G	AATGCTAGCTCCT	.	170	147	247	0	.	92	G	154524546	A	G	154524546	3	3	123	1	0	0	0	0	1	0	0	0	8201	420	15	2	2825	2	KIAA0922	4	154524546	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	7949255	154524546	36629730	88	15099											
AADAT	51166	hgsc.bcm.edu;bcgsc.ca	37	4	170999725	170999725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AADAT	NM_182662	exon5	c.A379G	p.M127V	TGATCATTTCAAA	.	67	4	102	0	.	90	C	170999725	T	C	170999725	3	2	123	1	0	0	0	0	1	0	0	0	14	1493	52	2	938	2	AADAT	4	170999725	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	16475179	170999725	20154551	89	15100											
HPGD	3248	hgsc.bcm.edu;bcgsc.ca	37	4	175443106	175443106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HPGD	NM_000860	exon2	c.A206G	p.Q69R	AGTTGTTGCTGGT	.	57	4	85	0	.	90	C	175443106	T	C	175443106	3	2	123	1	0	0	0	0	1	0	0	0	7334	1812	63	2	618	2	HPGD	4	175443106	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	4443381	175443106	15711170	90	15101											
KIAA0947	23379	hgsc.bcm.edu;bcgsc.ca	37	5	5489287	5489287	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0947	NM_015325	exon19	c.A6645G	p.A2215A	GTTAGCAGCCGTG	.	83	4	76	0	.	48	G	5489287	A	G	5489287	2	3	123	1	0	0	0	0	0	0	0	1	8202	175	7	2		2	KIAA0947	5	5489287	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		5489287	175425973	91	15102											
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38950476	38950476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RICTOR	NM_152756	exon31	c.A3474T	p.Q1158H	CTCTAATTGTAAT	.	427	190	309	1	.	849	A	38950476	T	A	38950476	3	1	123	1	0	0	0	0	1	0	0	0	13358	1490	52	4	1684	4	RICTOR	5	38950476	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	33461189	38950476	141964784	92	15103											
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82849183	82849183	+	Missense_Mutation	SNP	A	A	G	rs13184139	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VCAN	NM_004385	exon11	c.A9494G	p.D3165G	TCTCAGATACCGA	.	59	4	52	0	A|1.000;|0.000	238	G	82849183	A	G	82849183	3	3	123	1	0	0	0	0	1	0	0	0	17135	347	12	2	9532	2	VCAN	5	82849183	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	43898707	82849183	98066077	93	15104											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102237061	102237061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAM	NM_138822	exon3	c.C212A	p.S71Y	AATAGTCCGATAC	.	382	137	380	1	.	68	A	102237061	C	A	102237061	3	1	123	1	0	0	0	0	1	0	0	0	11412	869	30	3	222	3	PAM	5	102237061	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	19387878	102237061	78678199	94	15105											
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115823894	115823894	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA6A	NM_020796	exon10	c.656-2A>G	.	TGGTTCTGTAGAC	.	139	6	126	0	.	92	C	115823894	T	C	115823894	5	2	123	1	0	0	0	0	0	0	1	0	14039	1594	55	2	2482	2	SEMA6A	5	115823894	Splice_Site	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	13586833	115823894	65091366	95	15106											
SRFBP1	153443	hgsc.bcm.edu;bcgsc.ca	37	5	121309963	121309963	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRFBP1	NM_152546	exon2	c.C109A	p.R37R	GTTGGCCGACTGA	.	115	5	135	0	.	90	A	121309963	C	A	121309963	2	1	123	1	0	0	0	0	0	0	0	1	15143	644	23	1		1	SRFBP1	5	121309963	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	5486069	121309963	59605297	96	15107											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127704892	127704892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBN2	NM_001999	exon16	c.G2231A	p.C744Y	GCAGGGCATGGCT	.	38	15	42	0	.	146	T	127704892	C	T	127704892	3	4	123	1	0	0	0	0	1	0	0	0	5703	710	25	3	6707	3	FBN2	5	127704892	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	6394929	127704892	53210368	97	15108											
SHROOM1	134549	bcgsc.ca;mdanderson.org	37	5	132161730	132161730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM1	NM_133456	exon1	c.T103C	p.S35P	AGAAAGAGCTGTA	.	54	5	37	1	.	91	G	132161730	A	G	132161730	3	3	123	1	0	0	0	0	1	0	0	0	14293	304	11	2	2483	2	SHROOM1	5	132161730	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	4456838	132161730	48753530	98	15109											
NRG2	9542	broad.mit.edu;bcgsc.ca	37	5	139232521	139232521	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NRG2	NM_013982	exon8	c.C1408A	p.R470R	CCAGCCGGGGGTG	.	163	8	164	1	.	526	T	139232521	G	T	139232521	2	4	123	1	0	0	0	0	0	0	0	1	10648	1115	39	1		1	NRG2	5	139232521	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	7070791	139232521	41682739	99	15110											
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	140579924	140579924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB11	NM_018931	exon1	c.G577T	p.E193X	TACCCCGAGTTAG	.	262	123	196	0	.	96	T	140579924	G	T	140579924	4	4	123	1	0	0	0	0	0	1	0	0	11536	1059	37	1	579	1	PCDHB11	5	140579924	Nonsense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	1347403	140579924	40335336	100	15111											
PCDHB15	56121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140626597	140626597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB15	NM_018935	exon1	c.C1451G	p.A484G	CCAACGCCCAGGT	.	277	125	240	0	.	156	G	140626597	C	G	140626597	3	3	123	1	0	0	0	0	1	0	0	0	11540	739	26	4	1453	4	PCDHB15	5	140626597	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	46673	140626597	40288663	101	15112											
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140735864	140735864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_018917	exon1	c.T1097C	p.I366T	CAGTAATTGCACT	.	114	45	91	0	.	.	C	140735864	T	C	140735864	3	2	123	1	0	0	0	0	1	0	0	0	11556	1493	52	2	1099	2	PCDHGA4	5	140735864	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	109267	140735864	40179396	102	15113											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15497298	15497298	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JARID2	NM_004973	exon7	c.C1842T	p.I614I	GCACATCCACAAG	.	156	65	155	0	.	228	T	15497298	C	T	15497298	2	4	123	1	0	0	0	0	0	0	0	1	7945	845	30	3		3	JARID2	6	15497298	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10		15497298	155617769	103	15114											
ZNF311	282890	hgsc.bcm.edu;bcgsc.ca	37	6	28967374	28967374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF311	NM_001010877	exon5	c.A200G	p.E67G	ACATCCTCAAATG	.	91	4	84	0	.	22	C	28967374	T	C	28967374	3	2	123	1	0	0	0	0	1	0	0	0	17831	1551	54	2	1812	2	ZNF311	6	28967374	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	13470076	28967374	142147693	104	15115											
OR2B3	442184	hgsc.bcm.edu;bcgsc.ca	37	6	29054566	29054566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2B3	NM_001005226	exon1	c.G460T	p.G154C	AGTTGCCGAAACC	.	102	5	72	0	.	1	A	29054566	C	A	29054566	3	1	123	1	0	0	0	0	1	0	0	0	10990	652	23	1	485	1	OR2B3	6	29054566	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	87192	29054566	142060501	105	15116											
XPO5	57510	hgsc.bcm.edu;bcgsc.ca	37	6	43515423	43515423	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XPO5	NM_020750	exon19	c.T2082C	p.A694A	AATGAAAGCATCA	.	103	5	85	0	.	271	G	43515423	A	G	43515423	2	3	123	1	0	0	0	0	0	0	0	1	17444	59	3	2		2	XPO5	6	43515423	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	14460857	43515423	127599644	106	15117											
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50740456	50740456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFAP2D	NM_172238	exon8	c.C1238T	p.T413I	AACACACTACTCA	.	120	43	85	0	.	159	T	50740456	C	T	50740456	3	4	123	1	0	0	0	0	1	0	0	0	15787	565	20	3	1268	3	TFAP2D	6	50740456	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	7225033	50740456	120374611	107	15118											
SPACA1	81833	hgsc.bcm.edu;bcgsc.ca	37	6	88768538	88768538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPACA1	NM_030960	exon4	c.C472A	p.Q158K	CAAGACCAAGTGA	.	89	5	91	0	.	90	A	88768538	C	A	88768538	3	1	123	1	0	0	0	0	1	0	0	0	14972	595	21	3	486	3	SPACA1	6	88768538	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	38028082	88768538	82346529	108	15119											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90368429	90368429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDN1	NM_014611	exon89	c.A14921C	p.E4974A	GAGTGTTCTTCAG	.	314	149	319	1	.	100	G	90368429	T	G	90368429	3	3	123	1	0	0	0	0	1	0	0	0	9415	1783	62	5	1925	5	MDN1	6	90368429	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1599891	90368429	80746638	109	15120											
SMPD2	6610	hgsc.bcm.edu;bcgsc.ca	37	6	109764241	109764241	+	Missense_Mutation	SNP	A	A	G	rs145532915	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMPD2	NM_003080	exon8	c.A686G	p.K229R	AGCTGAAGCCATT	.	124	6	105	0	A|0.999;T|0.001	90	G	109764241	A	G	109764241	3	3	123	1	0	0	0	0	1	0	0	0	14805	72	3	2	716	2	SMPD2	6	109764241	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	19395812	109764241	61350826	110	15121											
FYN	2534	hgsc.bcm.edu;bcgsc.ca	37	6	112021440	112021440	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	FYN,NS,carcinoma,-2	FYN	NM_002037	exon9	c.A729G	p.V243V	GGGAACTACTAGG	.	78	4	112	0	.	1000	C	112021440	T	C	112021440	2	2	123	1	0	0	0	0	0	0	0	1	6126	1509	53	2		2	FYN	6	112021440	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	2257199	112021440	59093627	111	15122											
PLAGL1	5325	hgsc.bcm.edu;bcgsc.ca	37	6	144263706	144263706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLAGL1	NM_001080953	exon7	c.A247G	p.T83A	CGTGGGTCTGGAG	.	55	4	42	0	.	91	C	144263706	T	C	144263706	3	2	123	1	0	0	0	0	1	0	0	0	12019	1667	58	2	1148	2	PLAGL1	6	144263706	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	32242266	144263706	26851361	112	15123											
HOXA11	3207	hgsc.bcm.edu;bcgsc.ca	37	7	27222608	27222608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOXA11	NM_005523	exon2	c.A749G	p.K250R	TGGTACTTGGTAT	.	72	4	102	0	.	1082	C	27222608	T	C	27222608	3	2	123	1	0	0	0	0	1	0	0	0	7290	1609	56	2	196	2	HOXA11	7	27222608	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10		27222608	131916055	113	15124											
BMPER	168667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34101636	34101636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BMPER	NM_133468	exon12	c.G1055T	p.G352V	GAAAAGGATGCTG	.	102	44	151	1	.	92	T	34101636	G	T	34101636	3	4	123	1	0	0	0	0	1	0	0	0	1468	1174	41	3	1097	3	BMPER	7	34101636	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	6879028	34101636	125037027	114	15125											
ABCA13	154664	hgsc.bcm.edu;bcgsc.ca	37	7	48312768	48312768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA13	NM_152701	exon17	c.A3505G	p.M1169V	TTTGACATGAATG	.	97	5	113	0	.	521	G	48312768	A	G	48312768	3	3	123	1	0	0	0	0	1	0	0	0	31	217	8	2	3400	2	ABCA13	7	48312768	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	14211132	48312768	110825895	115	15126											
EGFR	1956	hgsc.bcm.edu;bcgsc.ca	37	7	55224338	55224338	+	Silent	SNP	G	G	T	rs2302536	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EGFR	NM_201283	exon9	c.G1119T	p.P373P	CCTGCCGGTGGCA	.	120	5	162	0	G|0.997;A|0.003	44910	T	55224338	G	T	55224338	2	4	123	1	0	0	0	0	0	0	0	1	4967	1103	39	1		1	EGFR	7	55224338	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	6911570	55224338	103914325	116	15127											
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86415661	86415661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRM3	NM_000840	exon3	c.G553C	p.D185H	CGCTATGATTACT	.	224	89	294	0	.	528	C	86415661	G	C	86415661	3	2	123	1	0	0	0	0	1	0	0	0	6798	1290	45	4	559	4	GRM3	7	86415661	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	31191323	86415661	72723002	117	15128											
CDK14	5218	hgsc.bcm.edu;bcgsc.ca	37	7	90747440	90747440	+	Missense_Mutation	SNP	G	G	T	rs74839397	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDK14	NM_012395	exon13	c.G1301T	p.R434L	GCATGCGGGCCTT	.	93	4	115	0	G|0.999;A|0.001	970	T	90747440	G	T	90747440	3	4	123	1	0	0	0	0	1	0	0	0	3130	1116	39	1	1351	1	CDK14	7	90747440	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	4331779	90747440	68391223	118	15129											
BHLHA15	168620	hgsc.bcm.edu;bcgsc.ca	37	7	97842082	97842082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BHLHA15	NM_177455	exon1	c.A461G	p.Q154R	ACTACCAGCAGCA	.	73	4	102	0	.	90	G	97842082	A	G	97842082	3	3	123	1	0	0	0	0	1	0	0	0	1419	188	7	2	463	2	BHLHA15	7	97842082	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	7094642	97842082	61296581	119	15130											
TRRAP	8295	hgsc.bcm.edu;bcgsc.ca	37	7	98545947	98545947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRRAP	NM_001244580	exon33	c.G4631T	p.R1544L	CGGAGCGGGCGAT	.	99	4	112	0	.	923	T	98545947	G	T	98545947	3	4	123	1	0	0	0	0	1	0	0	0	16598	1116	39	1	4699	1	TRRAP	7	98545947	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	703865	98545947	60592716	120	15131											
ZNF655	79027	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99170201	99170201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF655	NM_001085368	exon4	c.A575G	p.D192G	ATACCGATGACAA	.	44	5	60	0	.	91	G	99170201	A	G	99170201	3	3	123	1	0	0	0	0	1	0	0	0	18065	333	12	2	1007	2	ZNF655	7	99170201	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	624254	99170201	59968462	121	15132											
TFR2	7036	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	100226878	100226878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFR2	NM_003227	exon10	c.A1388G	p.N463S	TTACCGTTGCTCA	.	30	4	62	0	.	92	C	100226878	T	C	100226878	3	2	123	1	0	0	0	0	1	0	0	0	15808	1725	60	2	1053	2	TFR2	7	100226878	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1056677	100226878	58911785	122	15133											
LRRC17	10234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102584705	102584705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC17	NM_001031692	exon4	c.A977G	p.N326S	CAAACAACAGTCT	.	78	33	109	0	.	91	G	102584705	A	G	102584705	3	3	123	1	0	0	0	0	1	0	0	0	8973	43	2	2	1005	2	LRRC17	7	102584705	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2357827	102584705	56553958	123	15134											
CDHR3	222256	hgsc.bcm.edu;bcgsc.ca	37	7	105621574	105621574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDHR3	NM_152750	exon3	c.C410A	p.A137E	ACTTGGCAGAAGG	.	83	4	128	0	.	23	A	105621574	C	A	105621574	3	1	123	1	0	0	0	0	1	0	0	0	3120	710	25	3	420	3	CDHR3	7	105621574	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	3036869	105621574	53517089	124	15135											
MDFIC	29969	hgsc.bcm.edu;bcgsc.ca	37	7	114619590	114619590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDFIC	NM_199072	exon4	c.A574G	p.T192A	CTTCAGACTTCAG	.	87	4	140	0	.	91	G	114619590	A	G	114619590	3	3	123	1	0	0	0	0	1	0	0	0	9405	275	10	2	630	2	MDFIC	7	114619590	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	8998016	114619590	44519073	125	15136											
LRGUK	136332	hgsc.bcm.edu;bcgsc.ca	37	7	133876488	133876488	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRGUK	NM_144648	exon12	c.T1416C	p.D472D	TTTTGATGAAATG	.	87	4	154	0	.	227	C	133876488	T	C	133876488	2	2	123	1	0	0	0	0	0	0	0	1	8943	1461	51	2		2	LRGUK	7	133876488	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	19256898	133876488	25262175	126	15137											
ZC3HAV1L	92092	hgsc.bcm.edu;bcgsc.ca	37	7	138719329	138719329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3HAV1L	NM_080660	exon2	c.G461T	p.R154L	AGGATCCGAAGCT	.	80	4	93	0	.	90	A	138719329	C	A	138719329	3	1	123	1	0	0	0	0	1	0	0	0	17573	652	23	1	457	1	ZC3HAV1L	7	138719329	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4842841	138719329	20419334	127	15138											
SLC37A3	84255	hgsc.bcm.edu;bcgsc.ca	37	7	140069457	140069457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A3	NM_207113	exon4	c.C224A	p.P75H	GCACTGGGGAACA	.	47	4	44	0	.	93	T	140069457	G	T	140069457	3	4	123	1	0	0	0	0	1	0	0	0	14599	1232	43	3	1457	3	SLC37A3	7	140069457	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	1350128	140069457	19069206	128	15139											
WEE2	494551	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	141414139	141414139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WEE2	NM_001105558	exon2	c.T473C	p.F158S	ATCCCTTCACTCC	.	43	4	83	0	.	305	C	141414139	T	C	141414139	3	2	123	1	0	0	0	0	1	0	0	0	17342	1783	62	2	479	2	WEE2	7	141414139	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1344682	141414139	17724524	129	15140											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143016896	143016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCN1	NM_000083	exon2	c.G229A	p.G77R	GACATAGGGATGC	.	88	39	91	0	.	156	A	143016896	G	A	143016896	3	1	123	1	0	0	0	0	1	0	0	0	3462	1000	35	3	235	3	CLCN1	7	143016896	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	1602757	143016896	16121767	130	15141											
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2949044	2949044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSMD1	NM_033225	exon48	c.T7279C	p.Y2427H	CTGCATAGCGAAT	.	76	4	92	0	.	86	G	2949044	A	G	2949044	3	3	123	1	0	0	0	0	1	0	0	0	3944	420	15	2	3507	2	CSMD1	8	2949044	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		2949044	143414978	131	15142											
ADAM18	8749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39495084	39495084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM18	NM_014237	exon9	c.T689C	p.I230T	CTGTTATACTGTC	.	182	81	173	0	.	228	C	39495084	T	C	39495084	3	2	123	1	0	0	0	0	1	0	0	0	239	1406	49	2	723	2	ADAM18	8	39495084	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	36546040	39495084	106868938	132	15143											
NKX6-3	157848	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	41503971	41503971	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKX6-3	NM_152568	exon2	c.C405T	p.V135V	GCGTCAGACGCTG	.	97	43	97	1	.	90	A	41503971	G	A	41503971	2	1	123	1	0	0	0	0	0	0	0	1	10459	929	33	3		3	NKX6-3	8	41503971	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2008887	41503971	104860051	133	15144											
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	8	61757431	61757431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD7	NM_017780	exon22	c.G4859T	p.R1620L	GGGGACGGTGGAC	.	110	5	70	0	.	141	T	61757431	G	T	61757431	3	4	123	1	0	0	0	0	1	0	0	0	3330	1116	39	1	4941	1	CHD7	8	61757431	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	20253460	61757431	84606591	134	15145											
VPS13B	157680	hgsc.bcm.edu;bcgsc.ca	37	8	100654256	100654256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13B	NM_017890	exon34	c.A5513G	p.D1838G	CCTTTGACATATT	.	64	4	51	0	.	301	G	100654256	A	G	100654256	3	3	123	1	0	0	0	0	1	0	0	0	17187	275	10	2	5837	2	VPS13B	8	100654256	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	38896825	100654256	45709766	135	15146											
ANXA13	312	hgsc.bcm.edu;bcgsc.ca	37	8	124693533	124693533	+	Missense_Mutation	SNP	G	G	T	rs201212750	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANXA13	NM_001003954	exon12	c.C1021A	p.R341S	CTGAGCGAACCAT	.	124	5	153	0	G|0.999;A|0.000	93	T	124693533	G	T	124693533	3	4	123	1	0	0	0	0	1	0	0	0	717	1058	37	1	56	1	ANXA13	8	124693533	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	24039277	124693533	21670489	136	15147											
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142228278	142228278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC45A4	NM_001080431	exon4	c.G1308T	p.E436D	CTCCCCCTCCTCA	.	85	33	71	0	.	70	A	142228278	C	A	142228278	3	1	123	1	0	0	0	0	1	0	0	0	14643	680	24	3	1108	3	SLC45A4	8	142228278	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	17534745	142228278	4135744	137	15148											
GPIHBP1	338328	hgsc.bcm.edu;bcgsc.ca	37	8	144296897	144296897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPIHBP1	NM_178172	exon3	c.G191T	p.R64L	TGCTGCGGTGCTA	.	122	6	94	0	.	68	T	144296897	G	T	144296897	3	4	123	1	0	0	0	0	1	0	0	0	6612	1116	39	1	201	1	GPIHBP1	8	144296897	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2068619	144296897	2067125	138	15149											
KIAA0020	9933	hgsc.bcm.edu;bcgsc.ca	37	9	2807906	2807906	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0020	NM_014878	exon18	c.1724-2A>G	.	ACAACCTGTAAAA	.	73	4	42	0	.	91	C	2807906	T	C	2807906	5	2	123	1	0	0	0	0	0	0	1	0	8152	1594	55	2	232	2	KIAA0020	9	2807906	Splice_Site	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10		2807906	138405525	139	15150											
DNAJB5	25822	hgsc.bcm.edu;bcgsc.ca	37	9	34990809	34990809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJB5	NM_001135004	exon2	c.G308T	p.R103L	AGTTTCGGTAAGT	.	59	4	69	0	.	226	T	34990809	G	T	34990809	3	4	123	1	0	0	0	0	1	0	0	0	4623	1130	39	1	184	1	DNAJB5	9	34990809	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	32182903	34990809	106222622	140	15151											
CCIN	881	hgsc.bcm.edu;bcgsc.ca	37	9	36170794	36170794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCIN	NM_005893	exon1	c.G1295T	p.R432L	CTGGACGGTGCTT	.	92	5	86	0	.	92	T	36170794	G	T	36170794	3	4	123	1	0	0	0	0	1	0	0	0	2878	1116	39	1	1297	1	CCIN	9	36170794	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	1179985	36170794	105042637	141	15152											
TRPM3	80036	hgsc.bcm.edu;bcgsc.ca	37	9	73235023	73235023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRPM3	NM_001007471	exon15	c.G2062T	p.D688Y	AAATGTCGTCAAC	.	82	4	73	0	.	521	A	73235023	C	A	73235023	3	1	123	1	0	0	0	0	1	0	0	0	16584	884	31	1	3105	1	TRPM3	9	73235023	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	37064229	73235023	67978408	142	15153											
ROR2	4920	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94495611	94495611	+	Missense_Mutation	SNP	G	G	A	rs148340413	byfrequency	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ROR2	NM_004560	exon6	c.C730T	p.R244W	GTGTCCGGGAGCG	.	227	107	159	1	G|1.000;A|0.000	1471	A	94495611	G	A	94495611	3	1	123	1	0	0	0	0	1	0	0	0	13527	1115	39	1	2117	1	ROR2	9	94495611	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	21260588	94495611	46717820	143	15154											
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104130448	104130448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAAT	NM_001127610	exon3	c.T623C	p.L208S	TATTCCAAATCTG	.	142	65	118	0	.	228	G	104130448	A	G	104130448	3	3	123	1	0	0	0	0	1	0	0	0	1280	131	5	2	641	2	BAAT	9	104130448	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	9634837	104130448	37082983	144	15155											
SVEP1	79987	hgsc.bcm.edu;bcgsc.ca	37	9	113169106	113169106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SVEP1	NM_153366	exon38	c.G8774A	p.G2925D	GGAGCACCGTGCA	.	81	4	70	0	.	75	T	113169106	C	T	113169106	3	4	123	1	0	0	0	0	1	0	0	0	15417	507	18	3	1985	3	SVEP1	9	113169106	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	9038658	113169106	28044325	145	15156											
CRB2	286204	hgsc.bcm.edu;bcgsc.ca	37	9	126133645	126133645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRB2	NM_173689	exon8	c.G2224T	p.G742W	GACCTGGGGCAGC	.	143	6	124	0	.	91	T	126133645	G	T	126133645	3	4	123	1	0	0	0	0	1	0	0	0	3849	1232	43	3	2254	3	CRB2	9	126133645	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	12964539	126133645	15079786	146	15157											
GLE1	2733	hgsc.bcm.edu;bcgsc.ca	37	9	131277857	131277857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLE1	NM_001499	exon3	c.G371T	p.R124L	CCTCACGGGGGAT	.	51	4	93	0	.	22	T	131277857	G	T	131277857	3	4	123	1	0	0	0	0	1	0	0	0	6435	1116	39	1	381	1	GLE1	9	131277857	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	5144212	131277857	9935574	147	15158											
FAM188A	80013	hgsc.bcm.edu;bcgsc.ca	37	10	15883432	15883432	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM188A	NM_024948	exon4	c.A402G	p.E134E	AGAATGTTCCACT	.	89	6	71	0	.	228	C	15883432	T	C	15883432	2	2	123	1	0	0	0	0	0	0	0	1	5514	1722	60	2		2	FAM188A	10	15883432	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10		15883432	119651315	148	15159											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17142090	17142090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CUBN	NM_001081	exon14	c.G1679C	p.S560T	TTGTCACTGCTGA	.	264	116	205	0	.	166	G	17142090	C	G	17142090	3	3	123	1	0	0	0	0	1	0	0	0	4051	565	20	4	9408	4	CUBN	10	17142090	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1258658	17142090	118392657	149	15160											
CEP55	55165	hgsc.bcm.edu;bcgsc.ca	37	10	95275260	95275260	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP55	NM_001127182	exon5	c.G627T	p.T209T	GAAAACGGAAACA	.	148	6	111	0	.	90	T	95275260	G	T	95275260	2	4	123	1	0	0	0	0	0	0	0	1	3255	1103	39	1		1	CEP55	10	95275260	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	78133170	95275260	40259487	150	15161											
C10orf12	26148	hgsc.bcm.edu;bcgsc.ca	37	10	98741962	98741962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C10orf12	NM_015652	exon1	c.T815C	p.V272A	GAGACGTTTCACC	.	108	6	86	0	.	92	C	98741962	T	C	98741962	3	2	123	1	0	0	0	0	1	0	0	0	1589	1725	60	2	817	2	C10orf12	10	98741962	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	3466702	98741962	36792785	151	15162											
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103281409	103281409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BTRC	NM_033637	exon5	c.A338T	p.N113I	TTGCCAATGGCAC	.	148	53	99	0	.	659	T	103281409	A	T	103281409	3	4	123	1	0	0	0	0	1	0	0	0	1569	101	4	4	356	4	BTRC	10	103281409	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	4539447	103281409	32253338	152	15163											
GFRA1	2674	hgsc.bcm.edu;bcgsc.ca	37	10	117853332	117853332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFRA1	NM_005264	exon8	c.C896A	p.P299H	TAGTTGGGGGTCA	.	123	5	101	0	.	93	T	117853332	G	T	117853332	3	4	123	1	0	0	0	0	1	0	0	0	6347	1232	43	3	517	3	GFRA1	10	117853332	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	14571923	117853332	17681415	153	15164											
TACC2	10579	hgsc.bcm.edu;bcgsc.ca	37	10	123848021	123848021	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon5	c.T5488C	p.L1830L	TCCATGTTACCTT	.	143	6	100	0	.	296	C	123848021	T	C	123848021	2	2	123	1	0	0	0	0	0	0	0	1	15499	1722	60	2		2	TACC2	10	123848021	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	5994689	123848021	11686726	154	15165											
SIGIRR	59307	hgsc.bcm.edu;bcgsc.ca	37	11	407512	407512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIGIRR	NM_021805	exon6	c.T538C	p.F180L	TCACGAACTTGCG	.	167	7	132	0	.	90	G	407512	A	G	407512	3	3	123	1	0	0	0	0	1	0	0	0	14304	43	2	2	714	2	SIGIRR	11	407512	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		407512	134599004	155	15166											
LRRC56	115399	hgsc.bcm.edu;bcgsc.ca	37	11	540775	540775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC56	NM_198075	exon4	c.C91T	p.P31S	CACAACCCCTGCC	.	69	4	67	0	.	91	T	540775	C	T	540775	3	4	123	1	0	0	0	0	1	0	0	0	9012	623	22	3	93	3	LRRC56	11	540775	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	133263	540775	134465741	156	15167											
TH	7054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2190970	2190970	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TH	NM_199292	exon3	c.G315A	p.E105E	CTTCTCCTCAAAG	.	155	86	197	0	.	90	T	2190970	C	T	2190970	2	4	123	1	0	0	0	0	0	0	0	1	15835	680	24	3		3	TH	11	2190970	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1650195	2190970	132815546	157	15168											
ART1	417	hgsc.bcm.edu;broad.mit.edu	37	11	3681383	3681383	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ART1	NM_004314	exon3	c.C634T	p.Q212X	GCCCAGCAGTTTG	.	138	6	124	0	.	90	T	3681383	C	T	3681383	4	4	123	1	0	0	0	0	0	1	0	0	997	711	25	3	640	3	ART1	11	3681383	Nonsense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1490413	3681383	131325133	158	15169											
NUP98	4928	hgsc.bcm.edu;bcgsc.ca	37	11	3716712	3716712	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUP98	NM_016320	exon26	c.A4134G	p.R1378R	GCGCAGTCTCTCA	.	71	4	57	0	.	703	C	3716712	T	C	3716712	2	2	123	1	0	0	0	0	0	0	0	1	10773	1664	58	2		2	NUP98	11	3716712	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	35329	3716712	131289804	159	15170											
LIN7C	55327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27523454	27523454	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIN7C	NM_018362	exon2	c.A51G	p.A17A	TTCAATTGCTCTA	.	87	28	94	0	.	90	C	27523454	T	C	27523454	2	2	123	1	0	0	0	0	0	0	0	1	8812	1799	63	2		2	LIN7C	11	27523454	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	23806742	27523454	107483062	160	15171											
RCN1	5954	hgsc.bcm.edu;bcgsc.ca	37	11	32125951	32125951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RCN1	NM_002901	exon6	c.A929G	p.N310S	ACTGGAACATGTT	.	115	5	139	0	.	153	G	32125951	A	G	32125951	3	3	123	1	0	0	0	0	1	0	0	0	13179	43	2	2	951	2	RCN1	11	32125951	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	4602497	32125951	102880565	161	15172											
LMO2	4005	hgsc.bcm.edu;bcgsc.ca	37	11	33890910	33890910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LMO2	NM_005574	exon4	c.A230G	p.K77R	AGGCTCTTCCTTT	.	45	4	41	0	.	658	C	33890910	T	C	33890910	3	2	123	1	0	0	0	0	1	0	0	0	8852	1609	56	2	465	2	LMO2	11	33890910	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1764959	33890910	101115606	162	15173											
PHF21A	51317	hgsc.bcm.edu;bcgsc.ca	37	11	46098351	46098351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21A	NM_016621	exon5	c.A107G	p.Q36R	TGAAGCTGTTTCT	.	89	4	105	0	.	92	C	46098351	T	C	46098351	3	2	123	1	0	0	0	0	1	0	0	0	11833	1580	55	2	2021	2	PHF21A	11	46098351	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	12207441	46098351	88908165	163	15174											
YPEL4	219539	hgsc.bcm.edu;bcgsc.ca	37	11	57413467	57413467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YPEL4	NM_145008	exon5	c.A371G	p.N124S	CAGCCGTTGTCCT	.	75	4	64	0	.	90	C	57413467	T	C	57413467	3	2	123	1	0	0	0	0	1	0	0	0	17489	1725	60	2	16	2	YPEL4	11	57413467	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	11315116	57413467	77593049	164	15175											
FAM111B	374393	hgsc.bcm.edu;bcgsc.ca	37	11	58877115	58877115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM111B	NM_198947	exon3	c.C17A	p.T6N	TGAAGACTGAAGA	.	64	4	61	0	.	92	A	58877115	C	A	58877115	3	1	123	1	0	0	0	0	1	0	0	0	5400	565	20	3	19	3	FAM111B	11	58877115	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1463648	58877115	76129401	165	15176											
EML3	256364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62370651	62370651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML3	NM_153265	exon20	c.T2326C	p.Y776H	AGGTGTAGGTAGC	.	62	4	51	0	.	91	G	62370651	A	G	62370651	3	3	123	1	0	0	0	0	1	0	0	0	5098	420	15	2	376	2	EML3	11	62370651	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3493536	62370651	72635865	166	15177											
SNX15	29907	hgsc.bcm.edu;bcgsc.ca	37	11	64802421	64802421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNX15	NM_147777	exon4	c.A359G	p.K120R	AGCTCAAGGAGTT	.	105	5	89	0	.	227	G	64802421	A	G	64802421	3	3	123	1	0	0	0	0	1	0	0	0	14886	72	3	2	373	2	SNX15	11	64802421	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2431770	64802421	70204095	167	15178											
SPTBN2	6712	hgsc.bcm.edu;bcgsc.ca	37	11	66468660	66468660	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTBN2	NM_006946	exon16	c.C2910A	p.T970T	GGCCTGGGTCTCC	.	119	6	112	0	.	155	T	66468660	G	T	66468660	2	4	123	1	0	0	0	0	0	0	0	1	15119	1219	43	3		3	SPTBN2	11	66468660	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	1666239	66468660	68537856	168	15179											
PC	5091	hgsc.bcm.edu;bcgsc.ca	37	11	66639169	66639169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PC	NM_000920	exon4	c.A310G	p.K104E	CCACCTTGATGAT	.	88	4	86	0	.	228	C	66639169	T	C	66639169	3	2	123	1	0	0	0	0	1	0	0	0	11497	1821	63	2	3302	2	PC	11	66639169	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	170509	66639169	68367347	169	15180											
SHANK2	22941	hgsc.bcm.edu;bcgsc.ca	37	11	70336441	70336441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHANK2	NM_133266	exon8	c.A727G	p.S243G	TTGGGCTCCCAGG	.	102	5	99	0	.	94	C	70336441	T	C	70336441	3	2	123	1	0	0	0	0	1	0	0	0	14265	1551	54	2	3074	2	SHANK2	11	70336441	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	3697272	70336441	64670075	170	15181											
FAT3	120114	hgsc.bcm.edu;bcgsc.ca	37	11	92087868	92087868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAT3	NM_001008781	exon1	c.G2590T	p.G864C	TCTAATGGTGAAG	.	98	4	73	0	.	73	T	92087868	G	T	92087868	3	4	123	1	0	0	0	0	1	0	0	0	5691	1348	47	3	2592	3	FAT3	11	92087868	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	21751427	92087868	42918648	171	15182											
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103152947	103152947	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DYNC2H1	NM_001080463	exon73	c.T10822C	p.L3608L	GACATGTTACGGA	.	76	4	106	0	.	68	C	103152947	T	C	103152947	2	2	123	1	0	0	0	0	0	0	0	1	4846	1722	60	2		2	DYNC2H1	11	103152947	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	11065079	103152947	31853569	172	15183											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105781253	105781253	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIA4	NM_001077244	exon10	c.G1251T	p.V417V	AACAGTGGTTGTA	.	158	49	209	0	.	230	T	105781253	G	T	105781253	2	4	123	1	0	0	0	0	0	0	0	1	6770	1335	47	3		3	GRIA4	11	105781253	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2628306	105781253	29225263	173	15184											
ZC3H12C	85463	hgsc.bcm.edu;bcgsc.ca	37	11	110035709	110035709	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3H12C	NM_033390	exon6	c.C1899T	p.S633S	CATGAGCTGTGGG	.	55	4	74	0	.	68	T	110035709	C	T	110035709	2	4	123	1	0	0	0	0	0	0	0	1	17560	796	28	3		3	ZC3H12C	11	110035709	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4254456	110035709	24970807	174	15185											
ARHGAP20	57569	hgsc.bcm.edu;bcgsc.ca	37	11	110479748	110479748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGAP20	NM_020809	exon9	c.G735T	p.W245C	ATTGACCCACAAC	.	102	5	124	0	.	230	A	110479748	C	A	110479748	3	1	123	1	0	0	0	0	1	0	0	0	870	624	22	3	2872	3	ARHGAP20	11	110479748	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	444039	110479748	24526768	175	15186											
OR8A1	390275	hgsc.bcm.edu;bcgsc.ca	37	11	124440852	124440852	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR8A1	NM_001005194	exon1	c.G888T	p.T296T	CACCACGGTAATC	.	154	8	180	0	.	69	T	124440852	G	T	124440852	2	4	123	1	0	0	0	0	0	0	0	1	11225	1103	39	1		1	OR8A1	11	124440852	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	13961104	124440852	10565664	176	15187											
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133714476	133714476	+	Missense_Mutation	SNP	C	C	G	rs138068697	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA19	NM_174927	exon3	c.G195C	p.Q65H	TACACCCTGGGAA	.	178	110	225	0	C|1.000;T|0.000	90	G	133714476	C	G	133714476	3	3	123	1	0	0	0	0	1	0	0	0	15003	680	24	4	324	4	SPATA19	11	133714476	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	9273624	133714476	1292040	177	15188											
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33579155	33579155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYT10	NM_198992	exon2	c.G427A	p.E143K	GGACTTCTGCTGG	.	621	234	675	2	.	92	T	33579155	C	T	33579155	3	4	123	1	0	0	0	0	1	0	0	0	15463	922	32	3	1168	3	SYT10	12	33579155	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10		33579155	100272740	178	15189											
TROAP	10024	hgsc.bcm.edu;bcgsc.ca	37	12	49725141	49725141	+	Missense_Mutation	SNP	G	G	T	rs200487146	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TROAP	NM_005480	exon14	c.G2243T	p.R748L	CCACCCGGGTCTG	.	123	5	97	0	G|0.999;A|0.001	91	T	49725141	G	T	49725141	3	4	123	1	0	0	0	0	1	0	0	0	16572	1116	39	1	2395	1	TROAP	12	49725141	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	16145986	49725141	84126754	179	15190											
KRT1	3848	hgsc.bcm.edu;bcgsc.ca	37	12	53069530	53069530	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT1	NM_006121	exon9	c.1476-2A>G	.	ACATCCTGTAGGA	.	139	6	153	0	.	92	C	53069530	T	C	53069530	5	2	123	1	0	0	0	0	0	0	1	0	8447	1594	55	2	468	2	KRT1	12	53069530	Splice_Site	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	3344389	53069530	80782365	180	15191											
KRT77	374454	hgsc.bcm.edu;bcgsc.ca	37	12	53086273	53086273	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT77	NM_175078	exon7	c.G1359A	p.L453L	GACCCCCAGCATG	.	100	5	102	0	.	187	T	53086273	C	T	53086273	2	4	123	1	0	0	0	0	0	0	0	1	8490	581	21	3		3	KRT77	12	53086273	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	16743	53086273	80765622	181	15192											
TARBP2	6895	hgsc.bcm.edu;bcgsc.ca	37	12	53899518	53899518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TARBP2	NM_134323	exon8	c.T827C	p.I276T	AGAAGATCCTGTC	.	61	4	46	0	.	226	C	53899518	T	C	53899518	3	2	123	1	0	0	0	0	1	0	0	0	15553	1435	50	2	857	2	TARBP2	12	53899518	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	813245	53899518	79952377	182	15193											
ESYT1	23344	hgsc.bcm.edu;bcgsc.ca	37	12	56530663	56530663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ESYT1	NM_001184796	exon16	c.A1798G	p.K600E	TATATGAAACTAG	.	77	4	88	0	.	95	G	56530663	A	G	56530663	3	3	123	1	0	0	0	0	1	0	0	0	5264	247	9	2	1860	2	ESYT1	12	56530663	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2631145	56530663	77321232	183	15194											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57910119	57910119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARS	NM_004990	exon20	c.A2555C	p.Q852P	CAAAACAAGTATG	.	156	69	163	0	.	654	C	57910119	A	C	57910119	3	2	123	1	0	0	0	0	1	0	0	0	9316	144	5	5	2633	5	MARS	12	57910119	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	1379456	57910119	75941776	184	15195											
CAND1	55832	hgsc.bcm.edu;bcgsc.ca	37	12	67699020	67699020	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAND1	NM_018448	exon10	c.G1572T	p.V524V	TCCAGTGGTGGCT	.	173	7	163	0	.	516	T	67699020	G	T	67699020	2	4	123	1	0	0	0	0	0	0	0	1	2615	1335	47	3		3	CAND1	12	67699020	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	9788901	67699020	66152875	185	15196											
IFNG	3458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	68551870	68551870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFNG	NM_000619	exon3	c.T189A	p.S63R	TCTGTCACTCTCC	.	112	37	93	0	.	90	T	68551870	A	T	68551870	3	4	123	1	0	0	0	0	1	0	0	0	7548	156	6	4	319	4	IFNG	12	68551870	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	852850	68551870	65300025	186	15197											
CSRP2	1466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77253334	77253334	+	Silent	SNP	A	A	G	rs202057442		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSRP2	NM_001321	exon5	c.T498C	p.Y166Y	TTTACAATAGATT	.	332	161	333	1	A|0.999;G|0.001	91	G	77253334	A	G	77253334	2	3	123	1	0	0	0	0	0	0	0	1	3967	108	4	2		2	CSRP2	12	77253334	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	8701464	77253334	56598561	187	15198											
RASSF9	9182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	86198974	86198974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASSF9	NM_005447	exon2	c.C814T	p.R272X	TCAGTCGTTCTTC	.	109	35	141	0	.	23	A	86198974	G	A	86198974	4	1	123	1	0	0	0	0	0	1	0	0	13093	1153	40	1	497	1	RASSF9	12	86198974	Nonsense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	8945640	86198974	47652921	188	15199											
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106740125	106740125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCP11L2	NM_152772	exon10	c.G1377A	p.M459I	ATGCATGCCTCCT	.	108	42	127	0	.	93	A	106740125	G	A	106740125	3	1	123	1	0	0	0	0	1	0	0	0	15712	1319	46	3	1411	3	TCP11L2	12	106740125	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	20541151	106740125	27111770	189	15200											
POLR3B	55703	hgsc.bcm.edu;bcgsc.ca	37	12	106824192	106824192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLR3B	NM_018082	exon14	c.C1405T	p.R469C	GGTCCTCGCTCCC	.	91	4	115	0	.	91	T	106824192	C	T	106824192	3	4	123	1	0	0	0	0	1	0	0	0	12229	884	31	1	1459	1	POLR3B	12	106824192	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	84067	106824192	27027703	190	15201											
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110390999	110390999	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GIT2	NM_001135213	exon14	c.C1146T	p.H382H	AACGCTGTGCTGG	.	467	195	448	0	.	226	A	110390999	G	A	110390999	2	1	123	1	0	0	0	0	0	0	0	1	6397	1368	48	3		3	GIT2	12	110390999	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	3566807	110390999	23460896	191	15202											
ATP2A2	488	hgsc.bcm.edu;bcgsc.ca	37	12	110729905	110729905	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A2	NM_001681	exon4	c.C300A	p.A100A	AGTAGCCAATGCA	.	200	8	217	0	.	94	A	110729905	C	A	110729905	2	1	123	1	0	0	0	0	0	0	0	1	1137	581	21	3		3	ATP2A2	12	110729905	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	338906	110729905	23121990	192	15203											
OAS2	4939	hgsc.bcm.edu;bcgsc.ca	37	12	113444238	113444238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OAS2	NM_002535	exon8	c.A1489G	p.T497A	GGCTCCACACCCA	.	98	4	131	0	.	91	G	113444238	A	G	113444238	3	3	123	1	0	0	0	0	1	0	0	0	10800	159	6	2	1590	2	OAS2	12	113444238	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2714333	113444238	20407657	193	15204											
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	123055607	123055607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KNTC1	NM_014708	exon24	c.G1953C	p.E651D	GGCAGAGATATTT	.	232	15	254	0	.	543	C	123055607	G	C	123055607	3	2	123	1	0	0	0	0	1	0	0	0	8428	933	33	4	2043	4	KNTC1	12	123055607	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	9611369	123055607	10796288	194	15205											
SBNO1	55206	hgsc.bcm.edu;bcgsc.ca	37	12	123798234	123798234	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SBNO1	NM_001167856	exon23	c.A3153G	p.K1051K	AATGGATTTCATG	.	68	4	66	0	.	292	C	123798234	T	C	123798234	2	2	123	1	0	0	0	0	0	0	0	1	13862	1490	52	2		2	SBNO1	12	123798234	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	742627	123798234	10053661	195	15206											
ANKLE2	23141	hgsc.bcm.edu;bcgsc.ca	37	12	133313525	133313525	+	Missense_Mutation	SNP	G	G	T	rs201586661	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKLE2	NM_015114	exon8	c.C1547A	p.P516Q	AGTACCGGGTCTC	.	76	4	64	0	.	68	T	133313525	G	T	133313525	3	4	123	1	0	0	0	0	1	0	0	0	633	1116	39	1	1293	1	ANKLE2	12	133313525	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	9515291	133313525	538370	196	15207											
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133727625	133727625	+	Silent	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF10	NM_015394	exon3	c.C45G	p.T15T	GGTGACCTTCAAG	.	208	84	206	0	.	154	G	133727625	C	G	133727625	2	3	123	1	0	0	0	0	0	0	0	1	17709	668	24	4		4	ZNF10	12	133727625	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	414100	133727625	124270	197	15208											
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26273474	26273474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP8A2	NM_016529	exon25	c.T2375C	p.I792T	CGGTCATATGCTG	.	90	48	91	0	.	138	C	26273474	T	C	26273474	3	2	123	1	0	0	0	0	1	0	0	0	1193	1406	49	2	2473	2	ATP8A2	13	26273474	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10		26273474	88896404	198	15209											
KL	9365	hgsc.bcm.edu;bcgsc.ca	37	13	33635814	33635814	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KL	NM_004795	exon4	c.C2598T	p.L866L	AGACCTCCCCATG	.	83	4	88	0	.	155	T	33635814	C	T	33635814	2	4	123	1	0	0	0	0	0	0	0	1	8331	842	30	3		3	KL	13	33635814	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	7362340	33635814	81534064	199	15210											
NBEA	26960	hgsc.bcm.edu;bcgsc.ca	37	13	35517180	35517180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NBEA	NM_015678	exon1	c.G223T	p.A75S	AAATTCGCAGTGT	.	116	5	165	0	.	144	T	35517180	G	T	35517180	3	4	123	1	0	0	0	0	1	0	0	0	10187	1087	38	1	225	1	NBEA	13	35517180	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	1881366	35517180	79652698	200	15211											
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41892974	41892974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAA16	NM_001110798	exon3	c.T172C	p.C58R	CTGAACTGTTTAG	.	82	4	84	0	.	90	C	41892974	T	C	41892974	3	2	123	1	0	0	0	0	1	0	0	0	10119	1580	55	2	182	2	NAA16	13	41892974	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	6375794	41892974	73276904	201	15212											
NUDT15	55270	hgsc.bcm.edu;bcgsc.ca	37	13	48611895	48611895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUDT15	NM_018283	exon1	c.G13A	p.A5T	GCCAGCGCACAGC	.	61	4	74	0	.	90	A	48611895	G	A	48611895	3	1	123	1	0	0	0	0	1	0	0	0	10731	1087	38	1	15	1	NUDT15	13	48611895	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	6718921	48611895	66557983	202	15213											
SCEL	8796	hgsc.bcm.edu;bcgsc.ca	37	13	78130761	78130761	+	Missense_Mutation	SNP	G	G	T	rs200836262	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCEL	NM_003843	exon3	c.G74T	p.R25L	CCACACGGAAGCA	.	92	4	84	0	.	95	T	78130761	G	T	78130761	3	4	123	1	0	0	0	0	1	0	0	0	13888	1116	39	1	80	1	SCEL	13	78130761	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	29518866	78130761	37039117	203	15214											
SLITRK1	114798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84453981	84453981	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLITRK1	NM_052910	exon1	c.C1662G	p.S554R	GAGGTCGCTCATC	.	108	66	107	1	.	94	C	84453981	G	C	84453981	3	2	123	1	0	0	0	0	1	0	0	0	14742	1078	38	4	432	4	SLITRK1	13	84453981	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	6323220	84453981	30715897	204	15215											
RNASE4	6038	hgsc.bcm.edu;bcgsc.ca	37	14	21167714	21167714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNASE4	NM_002937	exon2	c.A184G	p.M62V	CGGAAGATGACTT	.	55	4	89	0	.	514	G	21167714	A	G	21167714	3	3	123	1	0	0	0	0	1	0	0	0	13406	333	12	2	186	2	RNASE4	14	21167714	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		21167714	86181826	205	15216											
SPTB	6710	hgsc.bcm.edu;bcgsc.ca	37	14	65252316	65252316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTB	NM_001024858	exon17	c.A3794G	p.E1265G	GAGGCCTCCTGGG	.	62	4	56	0	.	100	C	65252316	T	C	65252316	3	2	123	1	0	0	0	0	1	0	0	0	15117	1551	54	2	3337	2	SPTB	14	65252316	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	44084602	65252316	42097224	206	15217											
ADAM20	8748	hgsc.bcm.edu;bcgsc.ca	37	14	70989894	70989894	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM20	NM_003814	exon2	c.T1731C	p.S577S	ACTCTGAGATGCA	.	85	5	125	0	.	226	G	70989894	A	G	70989894	2	3	123	1	0	0	0	0	0	0	0	1	242	291	11	2		2	ADAM20	14	70989894	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	5737578	70989894	36359646	207	15218											
PTGR2	145482	hgsc.bcm.edu;bcgsc.ca	37	14	74350824	74350824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTGR2	NM_152444	exon10	c.A1000G	p.T334A	ATGATGACAGGAG	.	91	4	106	0	.	90	G	74350824	A	G	74350824	3	3	123	1	0	0	0	0	1	0	0	0	12754	275	10	2	1034	2	PTGR2	14	74350824	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3360930	74350824	32998716	208	15219											
SPATA7	55812	hgsc.bcm.edu;bcgsc.ca	37	14	88892683	88892683	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA7	NM_018418	exon6	c.T480C	p.S160S	CCTAAGTCTACAT	.	76	4	92	0	.	91	C	88892683	T	C	88892683	2	2	123	1	0	0	0	0	0	0	0	1	15013	1664	58	2		2	SPATA7	14	88892683	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	14541859	88892683	18456857	209	15220											
SMEK1	55671	hgsc.bcm.edu;bcgsc.ca	37	14	91937188	91937188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMEK1	NM_032560	exon11	c.G1614T	p.L538F	TAATGCCAAGAAA	.	93	4	142	0	.	226	A	91937188	C	A	91937188	3	1	123	1	0	0	0	0	1	0	0	0	14793	593	21	3	872	3	SMEK1	14	91937188	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	3044505	91937188	15412352	210	15221											
IFI27L1	122509	hgsc.bcm.edu;bcgsc.ca	37	14	94568841	94568841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFI27L1	NM_145249	exon5	c.T242C	p.V81A	TCTCTGTGACATC	.	83	4	136	0	.	90	C	94568841	T	C	94568841	3	2	123	1	0	0	0	0	1	0	0	0	7513	1696	59	2	256	2	IFI27L1	14	94568841	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	2631653	94568841	12780699	211	15222											
SETD3	84193	hgsc.bcm.edu;bcgsc.ca	37	14	99927679	99927679	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SETD3	NM_032233	exon5	c.197-2A>G	.	CAGACCTATATTA	.	49	4	73	0	.	514	C	99927679	T	C	99927679	5	2	123	1	0	0	0	0	0	0	1	0	14132	1536	53	2	1675	2	SETD3	14	99927679	Splice_Site	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	5358838	99927679	7421861	212	15223											
SLC12A6	9990	hgsc.bcm.edu;bcgsc.ca	37	15	34547524	34547524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC12A6	NM_133647	exon7	c.T815C	p.F272S	AGATAAAAGCAGA	.	69	5	91	0	.	517	G	34547524	A	G	34547524	3	3	123	1	0	0	0	0	1	0	0	0	14387	14	1	2	2713	2	SLC12A6	15	34547524	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		34547524	67983868	213	15224											
THBS1	7057	hgsc.bcm.edu;bcgsc.ca	37	15	39886569	39886569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THBS1	NM_003246	exon21	c.G3433T	p.G1145C	TATGCTGGTGGTA	.	98	4	106	0	.	653	T	39886569	G	T	39886569	3	4	123	1	0	0	0	0	1	0	0	0	15850	1348	47	3	3511	3	THBS1	15	39886569	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	5339045	39886569	62644823	214	15225											
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	15	63916007	63916007	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC1	NM_003922	exon73	c.C13528A	p.R4510R	ACGCTCGGGAAGG	.	50	4	75	0	.	666	T	63916007	G	T	63916007	2	4	123	1	0	0	0	0	0	0	0	1	7057	1124	39	1		1	HERC1	15	63916007	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	24029438	63916007	38615385	215	15226											
ITGA11	22801	hgsc.bcm.edu;bcgsc.ca	37	15	68631922	68631922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA11	NM_001004439	exon11	c.A1192G	p.T398A	CACTCGTCTCCTT	.	58	5	85	0	.	538	C	68631922	T	C	68631922	3	2	123	1	0	0	0	0	1	0	0	0	7874	1667	58	2	2454	2	ITGA11	15	68631922	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	4715915	68631922	33899470	216	15227											
SPESP1	246777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	69238897	69238897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPESP1	NM_145658	exon2	c.A1024G	p.R342G	TCAAGGAGAGTCA	.	38	4	41	0	.	90	G	69238897	A	G	69238897	3	3	123	1	0	0	0	0	1	0	0	0	15039	296	11	2	1030	2	SPESP1	15	69238897	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	606975	69238897	33292495	217	15228											
MYO9A	4649	hgsc.bcm.edu;bcgsc.ca	37	15	72196317	72196317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO9A	NM_006901	exon21	c.A2830G	p.T944A	GAACTGTTTCCAG	.	91	4	125	0	.	93	C	72196317	T	C	72196317	3	2	123	1	0	0	0	0	1	0	0	0	10084	1725	60	2	4904	2	MYO9A	15	72196317	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	2957420	72196317	30335075	218	15229											
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75221502	75221502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COX5A	NM_004255	exon2	c.A172G	p.T58A	AGTATGTTACCCA	.	121	39	183	0	.	90	C	75221502	T	C	75221502	3	2	123	1	0	0	0	0	1	0	0	0	3772	1725	60	2	292	2	COX5A	15	75221502	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	3025185	75221502	27309890	219	15230											
PTPN9	5780	hgsc.bcm.edu;bcgsc.ca	37	15	75761250	75761250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTPN9	NM_002833	exon13	c.T1642C	p.S548P	TGCGTGACACCGT	.	67	4	100	0	.	226	G	75761250	A	G	75761250	3	3	123	1	0	0	0	0	1	0	0	0	12794	275	10	2	143	2	PTPN9	15	75761250	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	539748	75761250	26770142	220	15231											
CSPG4	1464	hgsc.bcm.edu;bcgsc.ca	37	15	75982391	75982391	+	Missense_Mutation	SNP	G	G	T	rs200187536	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSPG4	NM_001897	exon3	c.C1015A	p.R339S	CCAGGCGGTGTTC	.	62	4	63	0	G|0.999;A|0.001	229	T	75982391	G	T	75982391	3	4	123	1	0	0	0	0	1	0	0	0	3960	1116	39	1	5985	1	CSPG4	15	75982391	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	221141	75982391	26549001	221	15232											
RASGRF1	5923	hgsc.bcm.edu;bcgsc.ca	37	15	79254552	79254552	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASGRF1	NM_002891	exon28	c.T3756C	p.S1252S	TACAAAAGATTGG	.	54	4	92	0	.	662	G	79254552	A	G	79254552	2	3	123	1	0	0	0	0	0	0	0	1	13072	59	3	2		2	RASGRF1	15	79254552	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3272161	79254552	23276840	222	15233											
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86286858	86286858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AKAP13	NM_006738	exon36	c.A8206G	p.N2736D	AAAAGGAACAGCA	.	78	4	129	0	.	258	G	86286858	A	G	86286858	3	3	123	1	0	0	0	0	1	0	0	0	449	246	9	2	8402	2	AKAP13	15	86286858	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	7032306	86286858	16244534	223	15234											
POLG	5428	hgsc.bcm.edu;bcgsc.ca	37	15	89876764	89876764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLG	NM_002693	exon2	c.G222T	p.L74F	GATGTCCAATGGG	.	70	4	85	0	.	228	A	89876764	C	A	89876764	3	1	123	1	0	0	0	0	1	0	0	0	12200	593	21	3	3585	3	POLG	15	89876764	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	3589906	89876764	12654628	224	15235											
ZNF710	374655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90610374	90610374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF710	NM_198526	exon2	c.A5G	p.E2G	GGATGGAGGGCTT	.	86	42	104	0	.	90	G	90610374	A	G	90610374	3	3	123	1	0	0	0	0	1	0	0	0	18112	304	11	2	7	2	ZNF710	15	90610374	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	733610	90610374	11921018	225	15236											
BLM	641	hgsc.bcm.edu;bcgsc.ca	37	15	91304196	91304196	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BLM	NM_000057	exon7	c.A1593G	p.K531K	TGTGAAAGATCAG	.	93	4	112	0	.	664	G	91304196	A	G	91304196	2	3	123	1	0	0	0	0	0	0	0	1	1445	69	3	2		2	BLM	15	91304196	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	693822	91304196	11227196	226	15237											
CHSY1	22856	hgsc.bcm.edu;bcgsc.ca	37	15	101718547	101718547	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHSY1	NM_014918	exon3	c.T1455C	p.H485H	CTCCTCATGCTCC	.	81	4	93	0	.	90	G	101718547	A	G	101718547	2	3	123	1	0	0	0	0	0	0	0	1	3412	214	8	2		2	CHSY1	15	101718547	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	10414351	101718547	812845	227	15238											
ITFG3	83986	hgsc.bcm.edu;bcgsc.ca	37	16	312091	312091	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITFG3	NM_032039	exon7	c.709-1G>T	.	ATTGCAGGTTAGT	.	113	5	243	0	.	90	T	312091	G	T	312091	5	4	123	1	0	0	0	0	0	0	1	0	7871	1014	35	3	726	3	ITFG3	16	312091	Splice_Site	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10		312091	90042662	228	15239											
MGRN1	23295	hgsc.bcm.edu;bcgsc.ca	37	16	4715144	4715144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MGRN1	NM_001142291	exon7	c.T670C	p.F224L	GCTGCCTTTGAAA	.	61	4	154	0	.	92	C	4715144	T	C	4715144	3	2	123	1	0	0	0	0	1	0	0	0	9559	1609	56	2	699	2	MGRN1	16	4715144	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	4403053	4715144	85639609	229	15240											
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9857312	9857312	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon14	c.C4089A	p.S1363S	GTTATCGGAGGTG	.	63	4	120	0	.	349	T	9857312	G	T	9857312	2	4	123	1	0	0	0	0	0	0	0	1	6779	1103	39	1		1	GRIN2A	16	9857312	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	5142168	9857312	80497441	230	15241											
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9862782	9862782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon13	c.T2521C	p.F841L	AGTAGAAGAGGTG	.	54	4	77	0	.	349	G	9862782	A	G	9862782	3	3	123	1	0	0	0	0	1	0	0	0	6779	72	3	2	1881	2	GRIN2A	16	9862782	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	5470	9862782	80491971	231	15242											
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9943750	9943750	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon6	c.C1191A	p.S397S	ACAGTCGGAGAAG	.	62	4	120	0	.	349	T	9943750	G	T	9943750	2	4	123	1	0	0	0	0	0	0	0	1	6779	1103	39	1		1	GRIN2A	16	9943750	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	80968	9943750	80411003	232	15243											
RSL1D1	26156	hgsc.bcm.edu;bcgsc.ca	37	16	11935611	11935611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RSL1D1	NM_015659	exon7	c.T796C	p.S266P	CAAACGAGGAAAA	.	122	5	135	0	.	90	G	11935611	A	G	11935611	3	3	123	1	0	0	0	0	1	0	0	0	13700	304	11	2	688	2	RSL1D1	16	11935611	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	1991861	11935611	78419142	233	15244											
ATP2A1	487	hgsc.bcm.edu;bcgsc.ca	37	16	28914131	28914131	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A1	NM_004320	exon19	c.C2643A	p.T881T	CAACACCCACTTT	.	121	5	160	0	.	93	A	28914131	C	A	28914131	2	1	123	1	0	0	0	0	0	0	0	1	1136	610	22	3		3	ATP2A1	16	28914131	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	16978520	28914131	61440622	234	15245											
ZNF646	9726	hgsc.bcm.edu;bcgsc.ca	37	16	31088245	31088245	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF646	NM_014699	exon2	c.C600T	p.P200P	TCTCCCCATCCCA	.	71	6	91	0	.	153	T	31088245	C	T	31088245	2	4	123	1	0	0	0	0	0	0	0	1	18059	581	21	3		3	ZNF646	16	31088245	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	2174114	31088245	59266508	235	15246											
SLC5A2	6524	hgsc.bcm.edu;bcgsc.ca	37	16	31499986	31499986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC5A2	NM_003041	exon10	c.G1173T	p.M391I	GCTCATGTCCTCG	.	56	4	113	0	.	91	T	31499986	G	T	31499986	3	4	123	1	0	0	0	0	1	0	0	0	14665	1377	48	3	1211	3	SLC5A2	16	31499986	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	411741	31499986	58854767	236	15247											
PHKB	5257	hgsc.bcm.edu;bcgsc.ca	37	16	47545621	47545621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHKB	NM_000293	exon5	c.T451C	p.S151P	CTTCACTCTGTTT	.	86	4	138	0	.	154	C	47545621	T	C	47545621	3	2	123	1	0	0	0	0	1	0	0	0	11845	1551	54	2	528	2	PHKB	16	47545621	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	16045635	47545621	42809132	237	15248											
CBLN1	869	hgsc.bcm.edu;bcgsc.ca	37	16	49313350	49313350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CBLN1	NM_004352	exon3	c.T547C	p.S183P	AGGTCGAGTACTT	.	133	6	214	0	.	90	G	49313350	A	G	49313350	3	3	123	1	0	0	0	0	1	0	0	0	2704	304	11	2	38	2	CBLN1	16	49313350	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	1767729	49313350	41041403	238	15249											
NKD1	85407	hgsc.bcm.edu;bcgsc.ca	37	16	50667325	50667325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKD1	NM_033119	exon10	c.C1046T	p.P349L	GGTCCCCCAAGGC	.	149	7	275	0	.	226	T	50667325	C	T	50667325	3	4	123	1	0	0	0	0	1	0	0	0	10441	623	22	3	1084	3	NKD1	16	50667325	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1353975	50667325	39687428	239	15250											
TK2	7084	hgsc.bcm.edu;bcgsc.ca	37	16	66575828	66575828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TK2	NM_001172645	exon3	c.G185T	p.G62V	GTCTTCCCACTTG	.	53	4	84	0	.	115	A	66575828	C	A	66575828	3	1	123	1	0	0	0	0	1	0	0	0	15930	623	22	3	644	3	TK2	16	66575828	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	15908503	66575828	23778925	240	15251											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72992020	72992020	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFHX3	NM_006885	exon2	c.G2025A	p.K675K	GTTGCACTTGGGG	.	39	4	41	0	.	72	T	72992020	C	T	72992020	2	4	123	1	0	0	0	0	0	0	0	1	17631	564	20	3		3	ZFHX3	16	72992020	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	6416192	72992020	17362733	241	15252											
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81185495	81185495	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PKD1L2	.	.	.	.	AGGTCATAGACCA	.	90	72	194	0	.	92	C	81185495	T	C	81185495	1	2	123	0	1	0	0	0	0	0	0	0	11965	1406	49	2		2	PKD1L2	16	81185495	RNA	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	8193475	81185495	9169258	242	15253											
IRF8	3394	hgsc.bcm.edu;bcgsc.ca	37	16	85946744	85946744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF8	NM_002163	exon5	c.T455C	p.V152A	CTTCTGTGGACGA	.	68	4	132	0	.	154	C	85946744	T	C	85946744	3	2	123	1	0	0	0	0	1	0	0	0	7836	1696	59	2	469	2	IRF8	16	85946744	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	4761249	85946744	4408009	243	15254											
SPG7	6687	hgsc.bcm.edu;bcgsc.ca	37	16	89616941	89616941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPG7	NM_003119	exon13	c.A1703G	p.Q568R	AAGAACAGAAAGT	.	78	4	100	0	.	226	G	89616941	A	G	89616941	3	3	123	1	0	0	0	0	1	0	0	0	15043	188	7	2	1903	2	SPG7	16	89616941	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3670197	89616941	737812	244	15255											
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90023996	90023996	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEF8	NM_207514	exon5	c.C483A	p.P161P	GCTGCCCGAGCAG	.	273	232	421	0	.	68	A	90023996	C	A	90023996	2	1	123	1	0	0	0	0	0	0	0	1	4387	639	23	1		1	DEF8	16	90023996	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	407055	90023996	330757	245	15256											
DLG4	1742	hgsc.bcm.edu;bcgsc.ca	37	17	7097797	7097797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG4	NM_001365	exon14	c.A1448G	p.D483G	GTCTTGTCGTAAT	.	56	4	56	0	.	24	C	7097797	T	C	7097797	3	2	123	1	0	0	0	0	1	0	0	0	4557	1667	58	2	891	2	DLG4	17	7097797	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10		7097797	74097413	246	15257											
DNAH9	1770	hgsc.bcm.edu;bcgsc.ca	37	17	11661007	11661007	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH9	NM_001372	exon35	c.C6993T	p.T2331T	CAGAACCAGGTAG	.	143	6	148	0	.	168	T	11661007	C	T	11661007	2	4	123	1	0	0	0	0	0	0	0	1	4608	581	21	3		3	DNAH9	17	11661007	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4563210	11661007	69534203	247	15258											
CDRT15	146822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	14139241	14139241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDRT15	NM_001007530	exon3	c.T499C	p.W167R	GCATCCATGCCTG	.	357	81	311	0	.	90	G	14139241	A	G	14139241	3	3	123	1	0	0	0	0	1	0	0	0	3175	217	8	2	69	2	CDRT15	17	14139241	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2478234	14139241	67055969	248	15259											
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34074044	34074044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAS2L2	NM_139285	exon5	c.C1076A	p.P359Q	AGGAATGGTGCCA	.	80	5	86	0	.	227	T	34074044	G	T	34074044	3	4	123	1	0	0	0	0	1	0	0	0	6247	1348	47	3	1574	3	GAS2L2	17	34074044	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	19934803	34074044	47121166	249	15260											
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36091619	36091619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HNF1B	NM_000458	exon4	c.C1012T	p.Q338X	TGGGCTGGTGGTG	.	431	174	421	0	.	71	A	36091619	G	A	36091619	4	1	123	1	0	0	0	0	0	1	0	0	7252	1357	47	3	685	3	HNF1B	17	36091619	Nonsense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2017575	36091619	45103591	250	15261											
TOP2A	7153	hgsc.bcm.edu;bcgsc.ca	37	17	38561112	38561112	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TOP2A	NM_001067	exon17	c.T1977C	p.D659D	TCGATCATCTATC	.	68	4	68	0	.	655	G	38561112	A	G	38561112	2	3	123	1	0	0	0	0	0	0	0	1	16362	214	8	2		2	TOP2A	17	38561112	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2469493	38561112	42634098	251	15262											
STAT5A	6776	hgsc.bcm.edu;bcgsc.ca	37	17	40460208	40460208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STAT5A	NM_003152	exon17	c.T1919C	p.L640P	GCAACCTGTGGAA	.	149	6	144	0	.	846	C	40460208	T	C	40460208	3	2	123	1	0	0	0	0	1	0	0	0	15267	1580	55	2	1977	2	STAT5A	17	40460208	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1899096	40460208	40735002	252	15263											
HSD17B1	3292	hgsc.bcm.edu;bcgsc.ca	37	17	40706435	40706435	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSD17B1	NM_000413	exon5	c.C552T	p.I184I	CCTGATCGAGTGC	.	60	4	39	0	.	90	T	40706435	C	T	40706435	2	4	123	1	0	0	0	0	0	0	0	1	7378	874	31	1		1	HSD17B1	17	40706435	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	246227	40706435	40488775	253	15264											
MPO	4353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	56355209	56355209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPO	NM_000250	exon7	c.C1183T	p.R395C	GGATGCGCGCTGA	.	37	15	38	0	.	156	A	56355209	G	A	56355209	3	1	123	1	0	0	0	0	1	0	0	0	9732	1087	38	1	1078	1	MPO	17	56355209	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	15648774	56355209	24840001	254	15265											
DCAF7	10238	hgsc.bcm.edu;bcgsc.ca	37	17	61666468	61666468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCAF7	NM_005828	exon8	c.G963T	p.W321C	GCAGTGGGCATCA	.	124	5	107	0	.	91	T	61666468	G	T	61666468	3	4	123	1	0	0	0	0	1	0	0	0	4275	1241	43	3	990	3	DCAF7	17	61666468	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	5311259	61666468	19528742	255	15266											
SSTR2	6752	hgsc.bcm.edu;bcgsc.ca	37	17	71166524	71166524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSTR2	NM_001050	exon2	c.A1066G	p.T356A	ACGGAGACCCAGA	.	86	5	73	0	.	522	G	71166524	A	G	71166524	3	3	123	1	0	0	0	0	1	0	0	0	15197	275	10	2	1068	2	SSTR2	17	71166524	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	9500056	71166524	10028686	256	15267											
FBF1	85302	hgsc.bcm.edu;bcgsc.ca	37	17	73916127	73916127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBF1	NM_001080542	exon18	c.A1847G	p.Q616R	TGGTGCTGCTGCT	.	115	5	96	0	.	205	C	73916127	T	C	73916127	3	2	123	1	0	0	0	0	1	0	0	0	5695	1580	55	2	1602	2	FBF1	17	73916127	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	2749603	73916127	7279083	257	15268											
USP36	57602	hgsc.bcm.edu;bcgsc.ca	37	17	76810529	76810529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP36	NM_025090	exon11	c.A1129G	p.S377G	GGCAGCTGTAGCC	.	96	4	83	0	.	659	C	76810529	T	C	76810529	3	2	123	1	0	0	0	0	1	0	0	0	17064	1580	55	2	2282	2	USP36	17	76810529	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	2894402	76810529	4384681	258	15269											
ENGASE	64772	hgsc.bcm.edu;bcgsc.ca	37	17	77073755	77073755	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ENGASE	NM_001042573	exon3	c.T225C	p.Y75Y	ATATTATGACAAG	.	78	4	61	0	.	91	C	77073755	T	C	77073755	2	2	123	1	0	0	0	0	0	0	0	1	5118	1471	51	2		2	ENGASE	17	77073755	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	263226	77073755	4121455	259	15270											
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	17	78445639	78445639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPTX1	NM_002522	exon4	c.G970T	p.G324W	AGACCCCGTCCCG	.	84	4	74	0	.	90	A	78445639	C	A	78445639	3	1	123	1	0	0	0	0	1	0	0	0	10602	652	23	1	336	1	NPTX1	17	78445639	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1371884	78445639	2749571	260	15271											
MYOM1	8736	hgsc.bcm.edu;bcgsc.ca	37	18	3187546	3187546	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon5	c.G861T	p.T287T	CCAAACCGTGTGG	.	89	4	115	0	.	94	A	3187546	C	A	3187546	2	1	123	1	0	0	0	0	0	0	0	1	10091	639	23	1		1	MYOM1	18	3187546	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10		3187546	74889702	261	15272											
TWSG1	57045	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	9337333	9337333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TWSG1	NM_020648	exon2	c.A106G	p.S36G	GATGTGAGCAAAT	.	44	4	35	0	.	92	G	9337333	A	G	9337333	3	3	123	1	0	0	0	0	1	0	0	0	16782	304	11	2	108	2	TWSG1	18	9337333	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	6149787	9337333	68739915	262	15273											
CEP192	55125	hgsc.bcm.edu;bcgsc.ca	37	18	13015339	13015339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP192	NM_032142	exon6	c.G532T	p.D178Y	GTGCTTGATGCTG	.	89	4	89	0	.	27	T	13015339	G	T	13015339	3	4	123	1	0	0	0	0	1	0	0	0	3251	1290	45	3	550	3	CEP192	18	13015339	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	3678006	13015339	65061909	263	15274											
LAMA3	3909	hgsc.bcm.edu;bcgsc.ca	37	18	21355846	21355846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAMA3	NM_001127717	exon10	c.A1364G	p.E455G	ACTGTGAGAAGTG	.	101	5	122	0	.	100	G	21355846	A	G	21355846	3	3	123	1	0	0	0	0	1	0	0	0	8607	304	11	2	1402	2	LAMA3	18	21355846	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	8340507	21355846	56721402	264	15275											
TTC39C	125488	hgsc.bcm.edu;bcgsc.ca	37	18	21660556	21660556	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39C	NM_001135993	exon5	c.C468T	p.I156I	TTATATCAAAGGT	.	83	4	75	0	.	91	T	21660556	C	T	21660556	2	4	123	1	0	0	0	0	0	0	0	1	16706	816	29	3		3	TTC39C	18	21660556	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	304710	21660556	56416692	265	15276											
SLC14A1	6563	hgsc.bcm.edu;bcgsc.ca	37	18	43310402	43310402	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC14A1	NM_001146037	exon2	c.C285A	p.T95T	TGTCACCGGTGAC	.	97	5	99	0	.	515	A	43310402	C	A	43310402	2	1	123	1	0	0	0	0	0	0	0	1	14396	639	23	1		1	SLC14A1	18	43310402	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	21649846	43310402	34766846	266	15277											
AP3D1	8943	hgsc.bcm.edu;bcgsc.ca	37	19	2138617	2138617	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP3D1	NM_003938	exon3	c.192+1G>A	.	CACTTACATACGT	.	101	7	72	0	.	90	T	2138617	C	T	2138617	5	4	123	1	0	0	0	0	0	0	1	0	746	492	17	3	3542	3	AP3D1	19	2138617	Splice_Site	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10		2138617	56990366	267	15278											
SIRT6	51548	hgsc.bcm.edu;bcgsc.ca	37	19	4179153	4179153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIRT6	NM_016539	exon3	c.T325C	p.F109L	CCAGGAAGCGGAG	.	93	5	67	0	.	227	G	4179153	A	G	4179153	3	3	123	1	0	0	0	0	1	0	0	0	14342	72	3	2	766	2	SIRT6	19	4179153	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	2040536	4179153	54949830	268	15279											
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7691045	7691045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XAB2	NM_020196	exon5	c.A634G	p.K212E	CGGCCTTAGACAC	.	101	41	90	0	.	272	C	7691045	T	C	7691045	3	2	123	1	0	0	0	0	1	0	0	0	17415	1763	61	2	1993	2	XAB2	19	7691045	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	3511892	7691045	51437938	269	15280											
COL5A3	50509	hgsc.bcm.edu;bcgsc.ca	37	19	10106242	10106242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL5A3	NM_015719	exon16	c.A1585G	p.M529V	TCACCATCTTGCC	.	80	4	55	0	.	99	C	10106242	T	C	10106242	3	2	123	1	0	0	0	0	1	0	0	0	3698	1435	50	2	3860	2	COL5A3	19	10106242	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	2415197	10106242	49022741	270	15281											
RDH8	50700	hgsc.bcm.edu;bcgsc.ca	37	19	10131464	10131464	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RDH8	NM_015725	exon4	c.G582A	p.L194L	GCTGCTGCAGTTC	.	80	4	101	0	.	94	A	10131464	G	A	10131464	2	1	123	1	0	0	0	0	0	0	0	1	13196	1306	46	3		3	RDH8	19	10131464	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	25222	10131464	48997519	271	15282											
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10476357	10476357	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TYK2	NM_003331	exon7	c.C847T	p.L283L	GGGCCAGCAGCCT	.	93	45	93	0	.	1009	A	10476357	G	A	10476357	2	1	123	1	0	0	0	0	0	0	0	1	16807	962	34	3		3	TYK2	19	10476357	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	344893	10476357	48652626	272	15283											
ZNF20	7568	hgsc.bcm.edu;bcgsc.ca	37	19	12243683	12243683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF20	NM_021143	exon4	c.A1318G	p.I440V	CATGTATATGCAA	.	89	4	75	0	.	22	C	12243683	T	C	12243683	3	2	123	1	0	0	0	0	1	0	0	0	17758	1406	49	2	284	2	ZNF20	19	12243683	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	1767326	12243683	46885300	273	15284											
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14273762	14273762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LPHN1	NM_001008701	exon6	c.G866T	p.R289L	ACCAGCCGCCCGT	.	89	4	62	0	.	523	A	14273762	C	A	14273762	3	1	123	1	0	0	0	0	1	0	0	0	8915	652	23	1	3634	1	LPHN1	19	14273762	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	2030079	14273762	44855221	274	15285											
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14765979	14765979	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EMR3	NM_032571	exon7	c.394-2A>T	.	TGCAGCTTTGAAG	.	309	135	259	1	.	528	A	14765979	T	A	14765979	5	1	123	1	0	0	0	0	0	0	1	0	5106	1623	56	4	1610	4	EMR3	19	14765979	Splice_Site	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	492217	14765979	44363004	275	15286											
ZNF333	84449	hgsc.bcm.edu;bcgsc.ca	37	19	14815924	14815924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF333	NM_032433	exon6	c.C365T	p.P122L	AGACACCATTGAC	.	72	4	90	0	.	92	T	14815924	C	T	14815924	3	4	123	1	0	0	0	0	1	0	0	0	17847	594	21	3	383	3	ZNF333	19	14815924	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	49945	14815924	44313059	276	15287											
UPF1	5976	hgsc.bcm.edu;bcgsc.ca	37	19	18963017	18963017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UPF1	NM_002911	exon6	c.G884T	p.R295L	TCCTGCGGTACGA	.	117	5	121	0	.	91	T	18963017	G	T	18963017	3	4	123	1	0	0	0	0	1	0	0	0	17000	1116	39	1	906	1	UPF1	19	18963017	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	4147093	18963017	40165966	277	15288											
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	19359573	19359573	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCAN	NM_004386	exon14	c.C3702A	p.Y1234X	CAAGTACAATGTC	.	126	60	129	0	.	94	A	19359573	C	A	19359573	4	1	123	1	0	0	0	0	0	1	0	0	10204	489	17	3	3752	3	NCAN	19	19359573	Nonsense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	396556	19359573	39769410	278	15289											
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33498926	33498926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHPN2	NM_033103	exon7	c.G754T	p.A252S	CTGCGGCTCTCTG	.	159	60	118	0	.	516	A	33498926	C	A	33498926	3	1	123	1	0	0	0	0	1	0	0	0	13351	797	28	3	1342	3	RHPN2	19	33498926	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	14139353	33498926	25630057	279	15290											
FCGBP	8857	hgsc.bcm.edu;bcgsc.ca	37	19	40440523	40440523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FCGBP	NM_003890	exon1	c.G3T	p.M1I	GGCACCCATGGCT	.	57	4	51	0	.	98	A	40440523	C	A	40440523	3	1	123	1	0	0	0	0	1	0	0	0	5778	594	21	3	16358	3	FCGBP	19	40440523	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	6941597	40440523	18688460	280	15291											
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	44570978	44570978	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF223	NM_013361	exon5	c.A997T	p.K333X	TTGTGTAAGCATC	.	135	52	103	0	.	91	T	44570978	A	T	44570978	4	4	123	1	0	0	0	0	0	1	0	0	17774	363	13	4	1011	4	ZNF223	19	44570978	Nonsense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	4130455	44570978	14558005	281	15292											
ZNF225	7768	hgsc.bcm.edu;bcgsc.ca	37	19	44635250	44635250	+	Silent	SNP	C	C	A	rs201221735	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_013362	exon5	c.C483A	p.S161S	TGTCTCCGTCCTT	.	121	5	103	0	C|0.999;T|0.000	.	A	44635250	C	A	44635250	2	1	123	1	0	0	0	0	0	0	0	1	17776	639	23	1		1	ZNF225	19	44635250	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	64272	44635250	14493733	282	15293											
FAM71E1	112703	hgsc.bcm.edu;bcgsc.ca	37	19	50971076	50971076	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM71E1	NM_138411	exon4	c.T502C	p.L168L	ACTTCAAGGGGAA	.	77	4	61	0	.	44	G	50971076	A	G	50971076	2	3	123	1	0	0	0	0	0	0	0	1	5611	69	3	2		2	FAM71E1	19	50971076	Silent	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	6335826	50971076	8157907	283	15294											
ZNF610	162963	hgsc.bcm.edu;bcgsc.ca	37	19	52856964	52856964	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF610,NS,carcinoma,0	ZNF610	NM_001161427	exon4	c.C93T	p.I31I	GGCCATCGAATTC	.	73	4	66	0	.	93	T	52856964	C	T	52856964	2	4	123	1	0	0	0	0	0	0	0	1	18033	874	31	1		1	ZNF610	19	52856964	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	1885888	52856964	6272019	284	15295											
KIF16B	55614	hgsc.bcm.edu;bcgsc.ca	37	20	16492142	16492142	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF16B	NM_001199865	exon6	c.A477G	p.R159R	TAGATCTCTCACA	.	94	4	106	0	.	291	C	16492142	T	C	16492142	2	2	123	1	0	0	0	0	0	0	0	1	8278	1548	54	2		2	KIF16B	20	16492142	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10		16492142	46533378	285	15296											
MYLK2	85366	hgsc.bcm.edu;bcgsc.ca	37	20	30419870	30419870	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYLK2	NM_033118	exon12	c.C1641A	p.A547A	GAAAGCCAAACGC	.	98	6	77	0	.	760	A	30419870	C	A	30419870	2	1	123	1	0	0	0	0	0	0	0	1	10057	581	21	3		3	MYLK2	20	30419870	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	13927728	30419870	32605650	286	15297											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34067549	34067549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP250	NM_007186	exon19	c.G2367T	p.Q789H	GGGGCAGCTGGAG	.	127	41	170	0	.	27	T	34067549	G	T	34067549	3	4	123	1	0	0	0	0	1	0	0	0	3252	962	34	3	2429	3	CEP250	20	34067549	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	3647679	34067549	28957971	287	15298											
SNAI1	6615	hgsc.bcm.edu;bcgsc.ca	37	20	48600493	48600493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAI1	NM_005985	exon2	c.T215C	p.I72T	AGCCAATTGCCTG	.	86	5	72	0	.	227	C	48600493	T	C	48600493	3	2	123	1	0	0	0	0	1	0	0	0	14826	1493	52	2	221	2	SNAI1	20	48600493	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	14532944	48600493	14425027	288	15299											
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62373570	62373570	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC2A4RG	NM_020062	exon5	c.C667T	p.L223L	ATCCGCCTGGTGC	.	137	62	126	0	.	90	T	62373570	C	T	62373570	2	4	123	1	0	0	0	0	0	0	0	1	14547	680	24	3		3	SLC2A4RG	20	62373570	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	13773077	62373570	651950	289	15300											
CXADR	1525	hgsc.bcm.edu;bcgsc.ca	37	21	18919456	18919456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXADR	NM_001207065	exon2	c.C155A	p.P52Q	AGGGACCGCTGGA	.	57	4	67	0	.	227	A	18919456	C	A	18919456	3	1	123	1	0	0	0	0	1	0	0	0	4076	652	23	1	161	1	CXADR	21	18919456	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10		18919456	29210439	290	15301											
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28296553	28296553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAMTS5	NM_007038	exon8	c.G2612T	p.G871V	TGTGATCCCACTT	.	133	51	104	0	.	229	A	28296553	C	A	28296553	3	1	123	1	0	0	0	0	1	0	0	0	269	855	30	3	184	3	ADAMTS5	21	28296553	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	9377097	28296553	19833342	291	15302											
SLC37A1	54020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43979198	43979198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A1	NM_018964	exon12	c.C980A	p.P327Q	AAATTCCAGTAAG	.	51	5	37	0	.	90	A	43979198	C	A	43979198	3	1	123	1	0	0	0	0	1	0	0	0	14597	608	21	3	1018	3	SLC37A1	21	43979198	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	15682645	43979198	4150697	292	15303											
ITGB2	3689	hgsc.bcm.edu;bcgsc.ca	37	21	46330223	46330223	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB2	NM_000211	exon3	c.C123A	p.P41P	GCAGCCGGGCCCC	.	143	6	104	0	.	717	T	46330223	G	T	46330223	2	4	123	1	0	0	0	0	0	0	0	1	7894	1103	39	1		1	ITGB2	21	46330223	Silent	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2351025	46330223	1799672	293	15304											
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17072001	17072001	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCT8L2	NM_014406	exon1	c.G1440T	p.V480V	AGTTCCCACACCC	.	155	113	285	0	.	69	A	17072001	C	A	17072001	2	1	123	1	0	0	0	0	0	0	0	1	2961	581	21	3		3	CCT8L2	22	17072001	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10		17072001	34232565	294	15305											
SNAP29	9342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21235375	21235375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAP29	NM_004782	exon3	c.C473T	p.A158V	AGGAAGCAAAGTA	.	153	107	209	1	.	278	T	21235375	C	T	21235375	3	4	123	1	0	0	0	0	1	0	0	0	14831	710	25	3	483	3	SNAP29	22	21235375	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	4163374	21235375	30069191	295	15306											
SEZ6L	23544	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	26690288	26690288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEZ6L	NM_021115	exon3	c.A866C	p.E289A	ATCCTGAGGGGTA	.	105	8	168	1	.	95	C	26690288	A	C	26690288	3	2	123	1	0	0	0	0	1	0	0	0	14143	304	11	5	876	5	SEZ6L	22	26690288	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	5454913	26690288	24614278	296	15307											
SFI1	9814	hgsc.bcm.edu;bcgsc.ca	37	22	31969140	31969140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SFI1	NM_001007467	exon9	c.A862G	p.R288G	AAACGGAGATTTC	.	53	4	50	0	.	90	G	31969140	A	G	31969140	3	3	123	1	0	0	0	0	1	0	0	0	14156	296	11	2	892	2	SFI1	22	31969140	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	5278852	31969140	19335426	297	15308											
DEPDC5	9681	hgsc.bcm.edu;bcgsc.ca	37	22	32217607	32217607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPDC5	NM_001136029	exon22	c.C1990T	p.H664Y	GCATATCATGAAG	.	74	4	88	0	.	519	T	32217607	C	T	32217607	3	4	123	1	0	0	0	0	1	0	0	0	4442	826	29	3	2094	3	DEPDC5	22	32217607	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	248467	32217607	19086959	298	15309											
CACNA1I	8911	hgsc.bcm.edu;bcgsc.ca	37	22	39994207	39994207	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CACNA1I	NM_001003406	exon2	c.T288C	p.L96L	GACACTTGGCATG	.	98	4	140	0	.	135	C	39994207	T	C	39994207	2	2	123	1	0	0	0	0	0	0	0	1	2546	1799	63	2		2	CACNA1I	22	39994207	Silent	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	7776600	39994207	11310359	299	15310											
SEPT3	55964	hgsc.bcm.edu;bcgsc.ca	37	22	42377812	42377812	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEPT3	NM_019106	exon2	c.C174A	p.T58T	GAAGACCGGTTTC	.	72	6	83	0	.	68	A	42377812	C	A	42377812	2	1	123	1	0	0	0	0	0	0	0	1	14065	639	23	1		1	SEPT3	22	42377812	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	2383605	42377812	8926754	300	15311											
LDOC1L	84247	hgsc.bcm.edu;bcgsc.ca	37	22	44893427	44893427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LDOC1L	NM_032287	exon2	c.C10T	p.P4S	TCTGCGGCTGCAC	.	66	4	119	0	.	69	A	44893427	G	A	44893427	3	1	123	1	0	0	0	0	1	0	0	0	8710	1203	42	3	713	3	LDOC1L	22	44893427	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	2515615	44893427	6411139	301	15312											
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45291935	45291935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21B	NM_138415	exon6	c.T860C	p.L287P	GTAACCAGGCCTA	.	98	67	139	0	.	93	G	45291935	A	G	45291935	3	3	123	1	0	0	0	0	1	0	0	0	11834	188	7	2	767	2	PHF21B	22	45291935	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	398508	45291935	6012631	302	15313											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45943008	45943008	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBLN1	NM_006487	exon12	c.C1365T	p.A455A	GTGTGCCAACGTC	.	45	33	80	0	.	515	T	45943008	C	T	45943008	2	4	123	1	0	0	0	0	0	0	0	1	5698	581	21	3		3	FBLN1	22	45943008	Silent	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	651073	45943008	5361558	303	15314											
GYG2	8908	hgsc.bcm.edu;bcgsc.ca	37	X	2774545	2774545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GYG2	NM_003918	exon7	c.A587G	p.D196G	GGGCAGACCAAGG	.	80	4	108	0	.	132	G	2774545	A	G	2774545	3	3	123	1	0	0	0	0	1	0	0	0	6906	275	10	2	609	2	GYG2	23	2774545	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10		2774545	152496015	304	15315											
RPS6KA3	6197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20181109	20181109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPS6KA3	NM_004586	exon19	c.G1814A	p.G605D	AGGACACCAAGAC	.	366	24	411	1	.	1504	T	20181109	C	T	20181109	3	4	123	1	0	0	0	0	1	0	0	0	13652	507	18	3	424	3	RPS6KA3	23	20181109	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	17406564	20181109	135089451	305	15316											
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32715997	32715997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DMD	NM_004006	exon9	c.T950A	p.F317Y	GAAGGAAATGGGC	.	177	88	232	2	.	265	T	32715997	A	T	32715997	3	4	123	1	0	0	0	0	1	0	0	0	4580	14	1	4	10634	4	DMD	23	32715997	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	12534888	32715997	122554563	306	15317											
CXorf22	170063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35971756	35971756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXorf22	NM_152632	exon7	c.A1094G	p.D365G	GACAGGACTATGC	.	362	122	433	2	.	131	G	35971756	A	G	35971756	3	3	123	1	0	0	0	0	1	0	0	0	4102	275	10	2	1120	2	CXorf22	23	35971756	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3255759	35971756	119298804	307	15318											
RPGR	6103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38145015	38145015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPGR	NM_001034853	exon15	c.G3237T	p.R1079S	ATCCTGCCTTTCA	.	745	365	834	1	.	131	A	38145015	C	A	38145015	3	1	123	1	0	0	0	0	1	0	0	0	13548	738	26	3	784	3	RPGR	23	38145015	Missense_Mutation	SNP	C	TCGA-EP-A2KB-01A-11D-A183-10	2173259	38145015	117125545	308	15319											
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47430811	47430811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARAF	NM_001256196	exon16	c.T1785A	p.D595E	GGCCGATGAGTTG	.	146	73	137	0	.	1557	A	47430811	T	A	47430811	3	1	123	1	0	0	0	0	1	0	0	0	837	1461	51	4	1834	4	ARAF	23	47430811	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	9285796	47430811	107839749	309	15320											
AR	367	hgsc.bcm.edu;bcgsc.ca	37	X	66766306	66766306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AR	NM_000044	exon1	c.A1318G	p.T440A	CTCTTCACAGCCG	.	43	4	45	0	.	661	G	66766306	A	G	66766306	3	3	123	1	0	0	0	0	1	0	0	0	836	159	6	2	1320	2	AR	23	66766306	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	19335495	66766306	88504254	310	15321											
ZMYM3	9203	hgsc.bcm.edu;bcgsc.ca	37	X	70465850	70465850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM3	NM_005096	exon16	c.T2671C	p.S891P	GCATCGAGAAAGG	.	89	4	96	0	.	131	G	70465850	A	G	70465850	3	3	123	1	0	0	0	0	1	0	0	0	17698	304	11	2	1481	2	ZMYM3	23	70465850	Missense_Mutation	SNP	A	TCGA-EP-A2KB-01A-11D-A183-10	3699544	70465850	84804710	311	15322											
DACH2	117154	hgsc.bcm.edu;bcgsc.ca	37	X	85404070	85404070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DACH2	NM_001139514	exon1	c.G446T	p.R149M	TCACCAGGAAAGA	.	59	4	61	0	.	136	T	85404070	G	T	85404070	3	4	123	1	0	0	0	0	1	0	0	0	4221	1000	35	3	448	3	DACH2	23	85404070	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	14938220	85404070	69866490	312	15323											
RNF128	79589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	105970375	105970375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF128	NM_194463	exon1	c.G232T	p.E78X	CCGCTGGAGCCTG	.	208	75	192	0	.	227	T	105970375	G	T	105970375	4	4	123	1	0	0	0	0	0	1	0	0	13436	1175	41	3	644	3	RNF128	23	105970375	Nonsense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	20566305	105970375	49300185	313	15324											
MMGT1	93380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135053250	135053250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMGT1	NM_173470	exon2	c.A99T	p.L33F	TTCTGTTAATCGC	.	484	245	578	0	.	130	A	135053250	T	A	135053250	3	1	123	1	0	0	0	0	1	0	0	0	9647	1751	61	4	308	4	MMGT1	23	135053250	Missense_Mutation	SNP	T	TCGA-EP-A2KB-01A-11D-A183-10	29082875	135053250	20217310	314	15325											
SOX3	6658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	139587141	139587141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SOX3	NM_005634	exon1	c.C85A	p.P29T	GGAAGGGTAGGCT	.	125	31	126	0	.	1083	T	139587141	G	T	139587141	3	4	123	1	0	0	0	0	1	0	0	0	14951	1261	44	3	1259	3	SOX3	23	139587141	Missense_Mutation	SNP	G	TCGA-EP-A2KB-01A-11D-A183-10	4533891	139587141	15683419	315	15326											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11316988	11316988	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MTOR	NM_004958	exon5	c.504+2T>A	.	ACACTCACAGCTG	.	28	19	79	0	.	1439	T	11316988	A	T	11316988	5	4	124	1	0	0	0	0	0	0	1	0	9954	173	6	4	7363	4	MTOR	1	11316988	Splice_Site	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		11316988	237933633	1	15327											
RUNX3	864	ucsc.edu;bcgsc.ca	37	1	25291022	25291022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RUNX3	NM_001031680	exon1	c.C41T	p.S14L	GTCGGCGAGTAGG	.	29	4	65	0	.	414	A	25291022	G	A	25291022	3	1	124	1	0	0	0	0	1	0	0	0	13749	1059	37	1	1288	1	RUNX3	1	25291022	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	13974034	25291022	223959599	2	15328											
RNF220	55182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	45111114	45111114	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RNF220	NM_018150	exon12	c.A1399T	p.K467X	AGCAGCAAGCAGG	.	29	14	148	0	.	228	T	45111114	A	T	45111114	4	4	124	1	0	0	0	0	0	1	0	0	13483	131	5	4	1441	4	RNF220	1	45111114	Nonsense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10	19820092	45111114	204139507	3	15329											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62971484	62971484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DOCK7	NM_001271999	exon36	c.G4453A	p.V1485I	CAGAAACGGTCTG	.	20	6	69	0	.	92	T	62971484	C	T	62971484	3	4	124	1	0	0	0	0	1	0	0	0	4692	536	19	1	2002	1	DOCK7	1	62971484	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	17860370	62971484	186279137	4	15330											
DNAJB4	11080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78481825	78481825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAJB4	NM_007034	exon3	c.A908G	p.N303S	CAAAAAATCCTGA	.	42	12	94	0	.	226	G	78481825	A	G	78481825	3	3	124	1	0	0	0	0	1	0	0	0	4622	101	4	2	918	2	DNAJB4	1	78481825	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10	15510341	78481825	170768796	5	15331											
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82409304	82409304	+	Missense_Mutation	SNP	G	G	A	rs139129579	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LPHN2	NM_012302	exon5	c.G1049A	p.R350Q	TAAACCGAGGAGA	.	27	13	164	0	G|1.000;A|0.000	525	A	82409304	G	A	82409304	3	1	124	1	0	0	0	0	1	0	0	0	8916	1058	37	1	1063	1	LPHN2	1	82409304	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	3927479	82409304	166841317	6	15332											
LRRC39	127495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100623869	100623869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRRC39	NM_144620	exon6	c.T431A	p.V144D	TTGGGGACAGTCT	.	40	22	164	1	.	93	T	100623869	A	T	100623869	3	4	124	1	0	0	0	0	1	0	0	0	8995	275	10	4	596	4	LRRC39	1	100623869	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10	18214565	100623869	148626752	7	15333											
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157805798	157805798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CD5L	NM_005894	exon3	c.G203T	p.G68V	GCAGCTCCACAGC	.	82	49	244	1	.	91	A	157805798	C	A	157805798	3	1	124	1	0	0	0	0	1	0	0	0	3027	855	30	3	856	3	CD5L	1	157805798	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	57181929	157805798	91444823	8	15334											
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	8934018	8934018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KIDINS220	NM_020738	exon12	c.C1198T	p.P400S	TGTTGGGCCTATA	.	24	12	62	0	.	93	A	8934018	G	A	8934018	3	1	124	1	0	0	0	0	1	0	0	0	8271	1203	42	3	4193	3	KIDINS220	2	8934018	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10		8934018	234265355	9	15335											
CAD	790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27460320	27460320	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CAD	NM_004341	exon28	c.C4470T	p.A1490A	CACAGCCGCTGCC	.	59	14	205	2	.	295	T	27460320	C	T	27460320	2	4	124	1	0	0	0	0	0	0	0	1	2565	639	23	1		1	CAD	2	27460320	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	18526302	27460320	215739053	10	15336											
PLB1	151056	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28812636	28812636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PLB1	NM_153021	exon28	c.T2015C	p.M672T	ACAATATGGTAAG	.	21	8	50	0	.	141	C	28812636	T	C	28812636	3	2	124	1	0	0	0	0	1	0	0	0	12024	1478	51	2	2158	2	PLB1	2	28812636	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	1352316	28812636	214386737	11	15337											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32724674	32724675	+	Silent	DNP	TC	TC	AT	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	p.F2842F	ATTCACTCTGGAG	.	26	9	87	0	.	.	AT	32724675	TC	AT	32724674	2	1	124	1	0	0	0	0	0	0	0	1	1438	1538	54	4		4	BIRC6	2	32724674	Silent	DNP	TC	TCGA-EP-A2KC-01A-11D-A20W-10	3912038	32724674	210474699	12	15338											
KCNK12	56660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47748598	47748598	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNK12	NM_022055	exon2	c.C741G	p.L247L	GAAGTAGAGCGAG	.	31	11	110	0	.	91	C	47748598	G	C	47748598	2	2	124	1	0	0	0	0	0	0	0	1	8060	929	33	4		4	KCNK12	2	47748598	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	15023924	47748598	195450775	13	15339											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	170147487	170147487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRP2	NM_004525	exon8	c.C790T	p.H264Y	ATTTATGAACATC	.	51	14	186	0	.	175	A	170147487	G	A	170147487	3	1	124	1	0	0	0	0	1	0	0	0	8956	1290	45	3	13465	3	LRP2	2	170147487	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	122398889	170147487	73051886	14	15340											
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191301480	191301501	+	Frame_Shift_Del	DEL	TGAACTCAAGCACAGCAACCCC	TGAACTCAAGCACAGCAACCCC	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TGAACTCAAGCACAGCAACCCC	TGAACTCAAGCACAGCAACCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MFSD6	NM_017694	exon3	c.725_746del	p.242_249del	TGACTTTGAACTC	.	23	8	163	0	.	92	-	191301501	TGAACTCAAGCACAGCAACCCC	-	191301480	7	5	124	1	0	1	0	1	0	0	0	0	9535	1821	63	0	727	0	MFSD6	2	191301480	Frame_Shift_Del	DEL	TGAACTCAAGCACAGCAACCCC	TCGA-EP-A2KC-01A-11D-A20W-10	21153993	191301480	51897893	15	15341											
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196729549	196729549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH7	NM_018897	exon41	c.A6830G	p.K2277R	TCCCTCTTGGGAT	.	48	5	202	0	.	102	C	196729549	T	C	196729549	3	2	124	1	0	0	0	0	1	0	0	0	4606	1609	56	2	5344	2	DNAH7	2	196729549	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	5428069	196729549	46469824	16	15342											
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217280006	217280006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SMARCAL1	NM_014140	exon3	c.G579C	p.K193N	GGCCAAGACAGCA	.	35	8	116	0	.	293	C	217280006	G	C	217280006	3	2	124	1	0	0	0	0	1	0	0	0	14773	933	33	4	581	4	SMARCAL1	2	217280006	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	20550457	217280006	25919367	17	15343											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883534	228883534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPHKAP	NM_030623	exon7	c.C2036T	p.S679F	TCAATGGAATGCC	.	63	22	194	0	.	167	A	228883534	G	A	228883534	3	1	124	1	0	0	0	0	1	0	0	0	15047	1174	41	3	3090	3	SPHKAP	2	228883534	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	11603528	228883534	14315839	18	15344											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230723949	230723949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TRIP12	NM_004238	exon3	c.A440T	p.Q147L	CTTTTCTGACTCC	.	50	21	101	0	.	572	A	230723949	T	A	230723949	3	1	124	1	0	0	0	0	1	0	0	0	16553	1580	55	4	5694	4	TRIP12	2	230723949	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	1840415	230723949	12475424	19	15345											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	117	18	347	2	.	24361	G	41266098	A	G	41266098	3	3	124	1	0	0	0	0	1	0	0	0	4016	275	10	2	101	2	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		41266098	156756332	20	15346											
DAG1	1605	ucsc.edu;bcgsc.ca	37	3	49569129	49569129	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DAG1	NM_001177642	exon4	c.C1185T	p.T395T	TGGCACCACAGTT	.	42	6	138	0	.	92	T	49569129	C	T	49569129	2	4	124	1	0	0	0	0	0	0	0	1	4225	581	21	3		3	DAG1	3	49569129	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	8303031	49569129	148453301	21	15347											
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52179895	52179895	+	Missense_Mutation	SNP	C	C	T	rs139462706	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	POC1A	NM_015426	exon6	c.G646A	p.V216M	TCCGCACGTCCCA	.	36	10	56	0	C|0.999;T|0.001	90	T	52179895	C	T	52179895	3	4	124	1	0	0	0	0	1	0	0	0	12175	536	19	1	601	1	POC1A	3	52179895	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	2610766	52179895	145842535	22	15348											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52428551	52428551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH1	NM_015512	exon67	c.T10697C	p.L3566P	ACTGGCTGTCAGA	.	86	28	228	0	.	67	C	52428551	T	C	52428551	3	2	124	1	0	0	0	0	1	0	0	0	4597	1580	55	2	10959	2	DNAH1	3	52428551	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	248656	52428551	145593879	23	15349											
KALRN	8997	ucsc.edu;bcgsc.ca	37	3	124209558	124209558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KALRN	NM_003947	exon30	c.G4408A	p.D1470N	AACCTGGATGTGC	.	24	4	64	0	.	738	A	124209558	G	A	124209558	3	1	124	1	0	0	0	0	1	0	0	0	7975	1174	41	3	4526	3	KALRN	3	124209558	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	71781007	124209558	73812872	24	15350											
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184290761	184290761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EPHB3	NM_004443	exon3	c.G653T	p.G218V	CCGCAGGCTTCGC	.	34	16	93	0	.	1455	T	184290761	G	T	184290761	3	4	124	1	0	0	0	0	1	0	0	0	5176	1203	42	3	663	3	EPHB3	3	184290761	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	60081203	184290761	13731669	25	15351											
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447378	187447378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BCL6	NM_001134738	exon4	c.A815T	p.D272V	TGCATATCACTTC	.	37	10	121	0	.	848	A	187447378	T	A	187447378	3	1	124	1	0	0	0	0	1	0	0	0	1376	1435	50	4	1329	4	BCL6	3	187447378	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	3156617	187447378	10575052	26	15352			1	13		2	2	15	T		4.34145e-05
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447392	187447392	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BCL6	NM_001134738	exon4	c.A801G	p.E267E	TGCCTCTTCTGGG	.	41	11	121	0	.	848	C	187447392	T	C	187447392	2	2	124	1	0	0	0	0	0	0	0	1	1376	1606	56	2		2	BCL6	3	187447392	Silent	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	14	187447392	10575038	27	15353			1	13		2	2	15	T		4.34145e-05
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193174846	193174846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ATP13A4	NM_032279	exon16	c.C1858A	p.L620M	ATGCCAGTCGGTC	.	62	22	168	0	.	92	T	193174846	G	T	193174846	3	4	124	1	0	0	0	0	1	0	0	0	1126	1020	36	3	1792	3	ATP13A4	3	193174846	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	5727454	193174846	4847584	28	15354											
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74284003	74284003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ALB	NM_000477	exon12	c.A1627G	p.K543E	TCTGAGAAGGAGA	.	21	8	80	1	.	96	G	74284003	A	G	74284003	3	3	124	1	0	0	0	0	1	0	0	0	486	247	9	2	1673	2	ALB	4	74284003	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		74284003	116870273	29	15355											
WNT8A	7478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137426639	137426639	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WNT8A	NM_058244	exon6	c.C933T	p.S311S	AAGCAGCTGTAAC	.	49	25	121	0	.	524	T	137426639	C	T	137426639	2	4	124	1	0	0	0	0	0	0	0	1	17393	796	28	3		3	WNT8A	5	137426639	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10		137426639	43488621	30	15356											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215321	140215321	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCDHA7	NM_031852	exon1	c.C1353T	p.N451N	CGACAACGCCCCG	.	113	55	379	0	.	94	T	140215321	C	T	140215321	2	4	124	1	0	0	0	0	0	0	0	1	11529	535	19	1		1	PCDHA7	5	140215321	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	2788682	140215321	40699939	31	15357											
HIST1H2BK	85236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27114511	27114511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	HIST1H2BK	NM_080593	exon1	c.C67A	p.Q23K	TCTTCTGCGCCTT	.	84	40	201	1	.	68	T	27114511	G	T	27114511	3	4	124	1	0	0	0	0	1	0	0	0	7150	1328	46	3	317	3	HIST1H2BK	6	27114511	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10		27114511	144000556	32	15358											
TNF	7124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31544935	31544935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TNF	NM_000594	exon4	c.G323A	p.R108Q	ACCGCCGGGCCAA	.	25	5	66	0	.	1085	A	31544935	G	A	31544935	3	1	124	1	0	0	0	0	1	0	0	0	16268	1116	39	1	337	1	TNF	6	31544935	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	4430424	31544935	139570132	33	15359											
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32816536	32816536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TAP1	NM_000593	exon7	c.C1639T	p.R547C	GGCAGCGAGGGGT	.	37	8	94	0	.	91	A	32816536	G	A	32816536	3	1	124	1	0	0	0	0	1	0	0	0	15547	1058	37	1	807	1	TAP1	6	32816536	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	1271601	32816536	138298531	34	15360											
KCNK5	8645	ucsc.edu;bcgsc.ca	37	6	39159107	39159107	+	Silent	SNP	G	G	T	rs146316205	byfrequency;alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNK5	NM_003740	exon5	c.C1059A	p.P353P	CAAGGTGGGCACC	.	34	5	85	0	G|1.000;A|0.000	227	T	39159107	G	T	39159107	2	4	124	1	0	0	0	0	0	0	0	1	8069	1335	47	3		3	KCNK5	6	39159107	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	6342571	39159107	131955960	35	15361											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139202242	139202242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ECT2L	NM_001195037	exon14	c.C1814T	p.A605V	ACAGAGCGATTCT	.	62	17	106	0	.	22	T	139202242	C	T	139202242	3	4	124	1	0	0	0	0	1	0	0	0	4902	768	27	1	1864	1	ECT2L	6	139202242	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	100043135	139202242	31912825	36	15362											
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776225	155776225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NOX3	NM_015718	exon2	c.C87A	p.D29E	GAACGTGTCAATA	.	101	52	199	0	.	91	T	155776225	G	T	155776225	3	4	124	1	0	0	0	0	1	0	0	0	10557	1368	48	3	1667	3	NOX3	6	155776225	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	16573983	155776225	15338842	37	15363											
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26779584	26779584	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SKAP2	NM_003930	exon6	c.308-1G>A	.	GGGCTCCTATGAG	.	24	6	43	0	.	91	T	26779584	C	T	26779584	5	4	124	1	0	0	0	0	0	0	1	0	14356	695	24	3	804	3	SKAP2	7	26779584	Splice_Site	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10		26779584	132359079	38	15364											
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81588622	81588622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CACNA2D1	NM_000722	exon38	c.G3128A	p.G1043E	TCAGGCCCTTTTC	.	39	5	88	0	.	96	T	81588622	C	T	81588622	3	4	124	1	0	0	0	0	1	0	0	0	2548	623	22	3	155	3	CACNA2D1	7	81588622	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	54809038	81588622	77550041	39	15365											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82581541	82581541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCLO	NM_014510	exon5	c.G8728A	p.V2910I	TTGTTACGACTGT	.	37	24	81	0	.	29	T	82581541	C	T	82581541	3	4	124	1	0	0	0	0	1	0	0	0	11583	536	19	1	6801	1	PCLO	7	82581541	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	992919	82581541	76557122	40	15366											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784846	82784846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCLO	NM_014510	exon2	c.C1111A	p.P371T	CTGGAGGCTTAGC	.	117	16	251	0	.	29	T	82784846	G	T	82784846	3	4	124	1	0	0	0	0	1	0	0	0	11583	1203	42	3	14430	3	PCLO	7	82784846	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	203305	82784846	76353817	41	15367											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	88964537	88964537	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF804B	NM_181646	exon4	c.C2241T	p.H747H	AGAACACCACTCA	.	58	6	131	0	.	101	T	88964537	C	T	88964537	2	4	124	1	0	0	0	0	0	0	0	1	18168	506	18	3		3	ZNF804B	7	88964537	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	6179691	88964537	70174126	42	15368											
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102760530	102760530	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NAPEPLD	NM_001122838	exon3	c.C435T	p.L145L	ATCCGTGAGAAAT	.	56	35	169	0	.	227	A	102760530	G	A	102760530	2	1	124	1	0	0	0	0	0	0	0	1	10163	1277	45	3		3	NAPEPLD	7	102760530	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	13795993	102760530	56378133	43	15369											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113519408	113519408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	PPP1R3A,NS,carcinoma,0	PPP1R3A	NM_002711	exon4	c.A1739G	p.D580G	GACACATCTGCTG	.	83	48	228	0	.	832	C	113519408	T	C	113519408	3	2	124	1	0	0	0	0	1	0	0	0	12371	1435	50	2	1633	2	PPP1R3A	7	113519408	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	10758878	113519408	45619255	44	15370											
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133812144	133812144	+	Silent	SNP	C	C	T	rs199883304		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRGUK	NM_144648	exon1	c.C24T	p.L8L	GGCTCTCCTGAGG	.	37	10	69	0	C|0.999;T|0.000	227	T	133812144	C	T	133812144	2	4	124	1	0	0	0	0	0	0	0	1	8943	842	30	3		3	LRGUK	7	133812144	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	20292736	133812144	25326519	45	15371											
ZNF398	57541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148863347	148863347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF398	NM_170686	exon3	c.A518G	p.K173R	TCATGAAGGGCAA	.	62	25	145	0	.	91	G	148863347	A	G	148863347	3	3	124	1	0	0	0	0	1	0	0	0	17882	72	3	2	528	2	ZNF398	7	148863347	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10	15051203	148863347	10275316	46	15372											
SGCZ	137868	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	13959983	13959983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SGCZ	NM_139167	exon7	c.A646G	p.I216V	CCATGATCAAGGA	.	13	8	62	0	.	93	C	13959983	T	C	13959983	3	2	124	1	0	0	0	0	1	0	0	0	14204	1435	50	2	300	2	SGCZ	8	13959983	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10		13959983	132404039	47	15373											
KCNB2	9312	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73480262	73480262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNB2	NM_004770	exon2	c.C293A	p.S98Y	TCACTTCCATTTT	.	63	8	114	0	.	158	A	73480262	C	A	73480262	3	1	124	1	0	0	0	0	1	0	0	0	8013	855	30	3	295	3	KCNB2	8	73480262	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	59520279	73480262	72883760	48	15374											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	94800156	94800156	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TMEM67	NM_153704	exon14	c.T1497C	p.D499D	CAAAGATGCCAAC	.	95	31	147	0	.	92	C	94800156	T	C	94800156	2	2	124	1	0	0	0	0	0	0	0	1	16193	1461	51	2		2	TMEM67	8	94800156	Silent	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	21319894	94800156	51563866	49	15375											
PRPF4	9128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116049016	116049016	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PRPF4	NM_004697	exon9	c.C843T	p.F281F	TGTATTCCATCCC	.	37	10	145	0	.	93	T	116049016	C	T	116049016	2	4	124	1	0	0	0	0	0	0	0	1	12570	854	30	3		3	PRPF4	9	116049016	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10		116049016	25164415	50	15376											
ASS1	445	ucsc.edu;bcgsc.ca	37	9	133333853	133333853	+	Missense_Mutation	SNP	C	C	A	rs147910468	byfrequency;alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ASS1	NM_054012	exon4	c.C240A	p.S80R	GTCCAGCGCACTG	.	31	4	94	0	C|1.000;T|0.000	91	A	133333853	C	A	133333853	3	1	124	1	0	0	0	0	1	0	0	0	1061	767	27	1	250	1	ASS1	9	133333853	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	17284837	133333853	7879578	51	15377											
YME1L1	10730	hgsc.bcm.edu;bcgsc.ca	37	10	27436456	27436456	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	YME1L1	NM_139312	exon3	c.310delC	p.R104fs	CTGGACGGATGTG	.	92	43	284	0	.	91	-	27436456	G	-	27436456	7	5	124	1	0	1	0	1	0	0	0	0	17484	1116	39	0	2083	0	YME1L1	10	27436456	Frame_Shift_Del	DEL	G	TCGA-EP-A2KC-01A-11D-A20W-10		27436456	108098291	52	15378											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84498384	84498384	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NRG3	NM_001165972	exon3	c.T1005C	p.T335T	GAAAACTGATTCC	.	68	21	158	0	.	522	C	84498384	T	C	84498384	2	2	124	1	0	0	0	0	0	0	0	1	10649	1567	55	2		2	NRG3	10	84498384	Silent	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	57061928	84498384	51036363	53	15379											
NRG3	10718	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84745054	84745054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NRG3	NM_001010848	exon9	c.T1784C	p.V595A	CTGAAGTCAAAAG	.	30	6	120	0	.	522	C	84745054	T	C	84745054	3	2	124	1	0	0	0	0	1	0	0	0	10649	1667	58	2	2062	2	NRG3	10	84745054	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	246670	84745054	50789693	54	15380											
FRA10AC1	118924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95436450	95436450	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FRA10AC1	NM_145246	exon13	c.788-2A>G	.	ATGTCCTGAAAAG	.	87	45	237	1	.	90	C	95436450	T	C	95436450	5	2	124	1	0	0	0	0	0	0	1	0	6041	1594	55	2	173	2	FRA10AC1	10	95436450	Splice_Site	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	10691396	95436450	40098297	55	15381											
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96802834	96802834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CYP2C8	NM_000770	exon7	c.C962G	p.A321G	ACTTTAGCTGACA	.	39	14	163	0	.	90	C	96802834	G	C	96802834	3	2	124	1	0	0	0	0	1	0	0	0	4167	985	34	4	522	4	CYP2C8	10	96802834	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	1366384	96802834	38731913	56	15382											
OAT	4942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126092375	126092375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OAT	NM_000274	exon6	c.A763T	p.R255W	GGTGCCTGGTGCA	.	41	12	152	0	.	68	A	126092375	T	A	126092375	3	1	124	1	0	0	0	0	1	0	0	0	10803	1579	55	4	576	4	OAT	10	126092375	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	29289541	126092375	9442372	57	15383											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1466531	1466531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BRSK2	NM_001256630	exon10	c.A958G	p.K320E	GGGGGCAAGAATG	.	33	19	137	0	.	333	G	1466531	A	G	1466531	3	3	124	1	0	0	0	0	1	0	0	0	1524	131	5	2	858	2	BRSK2	11	1466531	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		1466531	133539985	58	15384											
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	44072129	44072129	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACCSL	NM_001031854	exon3	c.G592T	p.E198X	TGCATTGAGGACA	.	63	27	217	0	.	95	T	44072129	G	T	44072129	4	4	124	1	0	0	0	0	0	1	0	0	134	1291	45	3	602	3	ACCSL	11	44072129	Nonsense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	42605598	44072129	90934387	59	15385											
TP53I11	9537	ucsc.edu;bcgsc.ca	37	11	44959105	44959105	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TP53I11	NM_001258323	exon5	c.188+1G>T	.	TGCTCACCTGAGC	.	48	5	222	0	.	227	A	44959105	C	A	44959105	5	1	124	1	0	0	0	0	0	0	1	0	16382	521	18	3	400	3	TP53I11	11	44959105	Splice_Site	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	886976	44959105	90047411	60	15386											
TCN1	6947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	59620709	59620709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TCN1	NM_001062	exon8	c.G1207T	p.E403X	GAAGTTCCCAGTA	.	70	8	198	0	.	92	A	59620709	C	A	59620709	4	1	124	1	0	0	0	0	0	1	0	0	15703	864	30	3	102	3	TCN1	11	59620709	Nonsense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	14661604	59620709	75385807	61	15387											
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62560160	62560160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NXF1	NM_006362	exon20	c.A1774T	p.N592Y	AGTTGTTGTCCTG	.	53	16	177	0	.	228	A	62560160	T	A	62560160	3	1	124	1	0	0	0	0	1	0	0	0	10782	1812	63	4	93	4	NXF1	11	62560160	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	2939451	62560160	72446356	62	15388											
OR8D2	283160	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124189177	124189177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OR8D2	NM_001002918	exon1	c.G917T	p.R306M	CTTCCCCTAGTCA	.	34	9	70	0	.	113	A	124189177	C	A	124189177	3	1	124	1	0	0	0	0	1	0	0	0	11232	681	24	3	21	3	OR8D2	11	124189177	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	61629017	124189177	10817339	63	15389											
ACAD8	27034	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134131672	134131672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACAD8	NM_014384	exon9	c.T980C	p.V327A	GGCTGGTGGCCGC	.	29	11	145	0	.	90	C	134131672	T	C	134131672	3	2	124	1	0	0	0	0	1	0	0	0	110	1696	59	2	1014	2	ACAD8	11	134131672	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	9942495	134131672	874844	64	15390											
CPNE8	144402	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39161460	39161460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CPNE8	NM_153634	exon8	c.T552A	p.F184L	TCGATAAAATACA	.	31	6	123	0	.	91	T	39161460	A	T	39161460	3	4	124	1	0	0	0	0	1	0	0	0	3818	11	1	4	1194	4	CPNE8	12	39161460	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		39161460	94690435	65	15391											
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49317594	49317594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FKBP11	NM_016594	exon5	c.G359A	p.G120E	CGTTTTCCATAGG	.	65	13	196	0	.	226	T	49317594	C	T	49317594	3	4	124	1	0	0	0	0	1	0	0	0	5903	855	30	3	311	3	FKBP11	12	49317594	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	10156134	49317594	84534301	66	15392											
LEMD3	23592	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	65563533	65563533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LEMD3	NM_001167614	exon1	c.C157G	p.Q53E	CAGCAACAGCACC	.	24	5	79	0	.	516	G	65563533	C	G	65563533	3	3	124	1	0	0	0	0	1	0	0	0	8721	479	17	4	159	4	LEMD3	12	65563533	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	16245939	65563533	68288362	67	15393											
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72388234	72388234	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TPH2	NM_173353	exon8	c.A957G	p.E319E	CCATGAACTCTTG	.	41	13	142	0	.	93	G	72388234	A	G	72388234	2	3	124	1	0	0	0	0	0	0	0	1	16399	40	2	2		2	TPH2	12	72388234	Silent	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10	6824701	72388234	61463661	68	15394											
FARP1	10160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99037964	99037964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FARP1	NM_005766	exon8	c.G655T	p.A219S	GAGATTGCCCGTC	.	22	7	55	0	.	290	T	99037964	G	T	99037964	3	4	124	1	0	0	0	0	1	0	0	0	5676	1319	46	3	904	3	FARP1	13	99037964	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10		99037964	16131914	69	15395											
TUBGCP4	27229	ucsc.edu;bcgsc.ca	37	15	43675659	43675659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TUBGCP4	NM_014444	exon7	c.T680C	p.I227T	TGGGCATTGGGGG	.	19	4	72	0	.	93	C	43675659	T	C	43675659	3	2	124	1	0	0	0	0	1	0	0	0	16765	1493	52	2	706	2	TUBGCP4	15	43675659	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10		43675659	58855733	70	15396											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48802359	48802359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FBN1	NM_000138	exon14	c.T1596G	p.D532E	ACACTCATCAATG	.	52	21	167	0	.	92	C	48802359	A	C	48802359	3	2	124	1	0	0	0	0	1	0	0	0	5702	214	8	5	7231	5	FBN1	15	48802359	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10	5126700	48802359	53729033	71	15397											
MCTP2	55784	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94841767	94841767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MCTP2	NM_001159643	exon1	c.C273A	p.S91R	CAAGAGCAGCAGT	.	16	4	44	0	.	93	A	94841767	C	A	94841767	3	1	124	1	0	0	0	0	1	0	0	0	9401	709	25	3	275	3	MCTP2	15	94841767	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	46039408	94841767	7689625	72	15398											
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2013233	2013233	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RPS2	NM_002952	exon4	c.C292T	p.L98L	CCCCCAGGAAGAA	.	34	14	129	0	.	90	A	2013233	G	A	2013233	2	1	124	1	0	0	0	0	0	0	0	1	13631	991	35	3		3	RPS2	16	2013233	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10		2013233	88341520	73	15399											
PHKG2	5261	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	30768227	30768227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PHKG2	NM_001172432	exon10	c.C1030T	p.R344W	GCGCTGCGGTCAG	.	13	3	57	0	.	334	T	30768227	C	T	30768227	3	4	124	1	0	0	0	0	1	0	0	0	11847	759	27	1	1064	1	PHKG2	16	30768227	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	28754994	30768227	59586526	74	15400											
SMCR7	125170	ucsc.edu;bcgsc.ca	37	17	18166172	18166172	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SMCR7	NM_148886	exon2	c.C171T	p.A57A	CCTGGCCGTGAAG	.	12	4	78	0	.	90	T	18166172	C	T	18166172	2	4	124	1	0	0	0	0	0	0	0	1	14790	639	23	1		1	SMCR7	17	18166172	Silent	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10		18166172	63029038	75	15401											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	26912926	26912926	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPAG5	NM_006461	exon7	c.G1696T	p.E566X	TTGCCTCCTCCCT	.	71	19	206	0	.	90	A	26912926	C	A	26912926	4	1	124	1	0	0	0	0	0	1	0	0	14981	864	30	3	1957	3	SPAG5	17	26912926	Nonsense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	8746754	26912926	54282284	76	15402											
EVI2B	2124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	29632211	29632211	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EVI2B	NM_006495	exon2	c.A417G	p.P139P	TGACTTTGGTGGT	.	292	23	617	0	.	92	C	29632211	T	C	29632211	2	2	124	1	0	0	0	0	0	0	0	1	5288	1799	63	2		2	EVI2B	17	29632211	Silent	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	2719285	29632211	51562999	77	15403											
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45000561	45000561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GOSR2	NM_001012511	exon1	c.G3A	p.M1I	CGACATGGATCCC	.	64	19	210	0	.	92	A	45000561	G	A	45000561	3	1	124	1	0	0	0	0	1	0	0	0	6578	1348	47	3	5	3	GOSR2	17	45000561	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	15368350	45000561	36194649	78	15404											
AANAT	15	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74465363	74465363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	AANAT	NM_001166579	exon6	c.T407A	p.V136E	GCCTTGTGGCCTT	.	50	19	133	0	.	90	A	74465363	T	A	74465363	3	1	124	1	0	0	0	0	1	0	0	0	18	1696	59	4	417	4	AANAT	17	74465363	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	29464802	74465363	6729847	79	15405											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78328357	78328357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RNF213	NM_001256071	exon36	c.C10843A	p.Q3615K	GCTCTCCAGGAGG	.	41	9	73	0	.	577	A	78328357	C	A	78328357	3	1	124	1	0	0	0	0	1	0	0	0	13477	595	21	3	11300	3	RNF213	17	78328357	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	3862994	78328357	2866853	80	15406											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7017348	7017348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LAMA1	NM_005559	exon20	c.G2737T	p.V913L	GGCACACGGCAGA	.	21	11	91	0	.	149	A	7017348	C	A	7017348	3	1	124	1	0	0	0	0	1	0	0	0	8605	536	19	1	6666	1	LAMA1	18	7017348	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10		7017348	71059900	81	15407											
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38694768	38694768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SIPA1L3	NM_015073	exon21	c.G5122A	p.E1708K	TCCAGCGAGGAGC	.	18	6	46	0	.	91	A	38694768	G	A	38694768	3	1	124	1	0	0	0	0	1	0	0	0	14331	1072	37	1	5196	1	SIPA1L3	19	38694768	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10		38694768	20434215	82	15408											
PSG1	5669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43382065	43382065	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PSG1	NM_001184826	exon2	c.C430T	p.L144L	ACTTACGGTGTAA	.	46	10	182	0	.	70	A	43382065	G	A	43382065	2	1	124	1	0	0	0	0	0	0	0	1	12653	1130	39	1		1	PSG1	19	43382065	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	4687297	43382065	15746918	83	15409											
SLC1A5	6510	broad.mit.edu;ucsc.edu	37	19	47280545	47280545	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SLC1A5	NM_005628	exon6	c.C1176T	p.L392L	CTGGAAGAGCGCG	.	25	5	98	0	.	90	A	47280545	G	A	47280545	2	1	124	1	0	0	0	0	0	0	0	1	14435	929	33	3		3	SLC1A5	19	47280545	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	3898480	47280545	11848438	84	15410											
MEIS3	56917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47912456	47912457	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	p.D341L	TCCTCATCTTCTC	.	19	4	93	0	.	.	AG	47912457	TC	AG	47912456	3	1	124	1	0	0	0	0	1	0	0	0	9469	1435	50	4	527	4	MEIS3	19	47912456	Missense_Mutation	DNP	TC	TCGA-EP-A2KC-01A-11D-A20W-10	631911	47912456	11216527	85	15411											
GLTSCR1	29998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48204844	48204844	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GLTSCR1	NM_015711	exon15	c.G3855A	p.E1285E	CGACGAGGACGGC	.	13	6	60	0	.	48	A	48204844	G	A	48204844	2	1	124	1	0	0	0	0	0	0	0	1	6474	991	35	3		3	GLTSCR1	19	48204844	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	292388	48204844	10924139	86	15412											
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952618	56952618	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF667	NM_022103	exon5	c.C1746T	p.P582P	TTCATAGGGTTTC	.	29	11	95	0	.	91	A	56952618	G	A	56952618	2	1	124	1	0	0	0	0	0	0	0	1	18071	987	35	3		3	ZNF667	19	56952618	Silent	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	8747774	56952618	2176365	87	15413											
NSFL1C	55968	broad.mit.edu;ucsc.edu	37	20	1433676	1433676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NSFL1C	NM_016143	exon6	c.G647T	p.G216V	ACTCACCCTCTGC	.	41	4	71	0	.	90	A	1433676	C	A	1433676	3	1	124	1	0	0	0	0	1	0	0	0	10672	637	22	3	481	3	NSFL1C	20	1433676	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10		1433676	61591844	88	15414											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	9546904	9546904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PAK7	NM_177990	exon5	c.A1118T	p.Y373F	GACGGGTACTGGT	.	20	9	52	0	.	1434	A	9546904	T	A	9546904	3	1	124	1	0	0	0	0	1	0	0	0	11405	1638	57	4	1065	4	PAK7	20	9546904	Missense_Mutation	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	8113228	9546904	53478616	89	15415											
WISP2	8839	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43344036	43344036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WISP2	NM_003881	exon1	c.G5A	p.R2K	ACATGAGAGGCAC	.	12	5	47	0	.	130	A	43344036	G	A	43344036	3	1	124	1	0	0	0	0	1	0	0	0	17370	942	33	3	7	3	WISP2	20	43344036	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	33797132	43344036	19681484	90	15416											
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354541	45354541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SLC2A10	NM_030777	exon2	c.G866A	p.G289E	CCATGGGGCTGGT	.	25	12	118	0	.	91	A	45354541	G	A	45354541	3	1	124	1	0	0	0	0	1	0	0	0	14539	1232	43	3	872	3	SLC2A10	20	45354541	Missense_Mutation	SNP	G	TCGA-EP-A2KC-01A-11D-A20W-10	2010505	45354541	17670979	91	15417											
ZNF70	7621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24086004	24086004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF70	NM_021916	exon2	c.T1324A	p.S442T	CCCCAGAATGAAT	.	40	23	166	0	.	92	T	24086004	A	T	24086004	3	4	124	1	0	0	0	0	1	0	0	0	18100	246	9	4	20	4	ZNF70	22	24086004	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		24086004	27218562	92	15418											
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38664209	38664209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MID1IP1	NM_021242	exon2	c.A10G	p.I4V	ATGCAAATCTGCG	.	49	39	183	0	.	130	G	38664209	A	G	38664209	3	3	124	1	0	0	0	0	1	0	0	0	9577	101	4	2	12	2	MID1IP1	23	38664209	Missense_Mutation	SNP	A	TCGA-EP-A2KC-01A-11D-A20W-10		38664209	116606351	93	15419											
COL4A5	1287	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107834316	107834316	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	COL4A5	NM_000495	exon20	c.T1194C	p.P398P	TGGCCCTCCTGGA	.	37	26	124	1	.	133	C	107834316	T	C	107834316	2	2	124	1	0	0	0	0	0	0	0	1	3694	1538	54	2		2	COL4A5	23	107834316	Silent	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	69170107	107834316	47436244	94	15420											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695030	109695030	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RGAG1	NM_020769	exon3	c.T1185A	p.S395S	AGCCTCTGGGGTG	.	17	12	57	0	.	132	A	109695030	T	A	109695030	2	1	124	1	0	0	0	0	0	0	0	1	13274	1567	55	4		4	RGAG1	23	109695030	Silent	SNP	T	TCGA-EP-A2KC-01A-11D-A20W-10	1860714	109695030	45575530	95	15421											
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152106689	152106689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF185	NM_001178106	exon16	c.C1286T	p.A429V	AGGATGCAAAGGC	.	33	26	102	0	.	133	T	152106689	C	T	152106689	3	4	124	1	0	0	0	0	1	0	0	0	17749	710	25	3	1366	3	ZNF185	23	152106689	Missense_Mutation	SNP	C	TCGA-EP-A2KC-01A-11D-A20W-10	42411659	152106689	3163871	96	15422											
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17256975	17256975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CROCC	NM_014675	exon7	c.G735T	p.Q245H	GGACCAGGCAGGC	.	123	25	150	0	.	137	T	17256975	G	T	17256975	3	4	125	1	0	0	0	0	1	0	0	0	3893	991	35	3	761	3	CROCC	1	17256975	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		17256975	231993646	1	15423											
HOOK1	51361	ucsc.edu;bcgsc.ca	37	1	60287594	60287594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HOOK1	NM_015888	exon2	c.T128C	p.M43T	TTGCCATGGCACA	.	38	4	41	0	.	154	C	60287594	T	C	60287594	3	2	125	1	0	0	0	0	1	0	0	0	7282	1464	51	2	134	2	HOOK1	1	60287594	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	43030619	60287594	188963027	2	15424											
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75684996	75684996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC44A5	NM_152697	exon16	c.A1212T	p.K404N	TATGACTTTGTAT	.	51	20	87	0	.	95	A	75684996	T	A	75684996	3	1	125	1	0	0	0	0	1	0	0	0	14639	1606	56	4	1094	4	SLC44A5	1	75684996	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	15397402	75684996	173565625	3	15425											
PSRC1	84722	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109823808	109823808	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PSRC1	NM_001032291	exon5	c.G585T	p.S195S	GGGAGTCGATCGG	.	66	14	115	1	.	90	A	109823808	C	A	109823808	2	1	125	1	0	0	0	0	0	0	0	1	12719	871	31	1		1	PSRC1	1	109823808	Silent	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	34138812	109823808	139426813	4	15426											
CD2	914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117311336	117311336	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD2	NM_001767	exon5	c.C987A	p.P329P	CCTCCCCAGACCT	.	109	35	148	0	.	153	A	117311336	C	A	117311336	2	1	125	1	0	0	0	0	0	0	0	1	2979	581	21	3		3	CD2	1	117311336	Silent	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	7487528	117311336	131939285	5	15427											
HIST2H2AC	8338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858529	149858529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HIST2H2AC	NM_003517	exon1	c.C5G	p.S2C	TCATGTCTGGTCG	.	155	67	86	1	.	92	G	149858529	C	G	149858529	3	3	125	1	0	0	0	0	1	0	0	0	7178	913	32	4	7	4	HIST2H2AC	1	149858529	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	32547193	149858529	99392092	6	15428											
SHC1	6464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154941042	154941042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SHC1	NM_183001	exon4	c.T679G	p.F227V	CAGCAAATTTCAG	.	146	64	156	0	.	847	C	154941042	A	C	154941042	3	2	125	1	0	0	0	0	1	0	0	0	14270	101	4	5	1111	5	SHC1	1	154941042	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	5082513	154941042	94309579	7	15429											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158612680	158612680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPTA1	NM_003126	exon32	c.A4529G	p.E1510G	AGCTCCTCAAGGT	.	292	13	276	0	.	142	C	158612680	T	C	158612680	3	2	125	1	0	0	0	0	1	0	0	0	15115	1551	54	2	2814	2	SPTA1	1	158612680	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	3671638	158612680	90637941	8	15430											
PIGM	93183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160001525	160001525	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIGM	NM_145167	exon1	c.G5C	p.G2A	GTGGAGCCCATGA	.	104	17	105	0	.	228	G	160001525	C	G	160001525	3	3	125	1	0	0	0	0	1	0	0	0	11892	739	26	4	1270	4	PIGM	1	160001525	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	1388845	160001525	89249096	9	15431											
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186277380	186277380	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.T2529A	p.A843A	GCCTGCTCCAACT	.	261	23	277	0	.	91	A	186277380	T	A	186277380	2	1	125	1	0	0	0	0	0	0	0	1	12481	1538	54	4		4	PRG4	1	186277380	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	26275855	186277380	62973241	10	15432	83	2									
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186277383	186277383	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.A2532C	p.P844P	TGCTCCAACTACT	.	266	29	275	0	.	91	C	186277383	A	C	186277383	2	2	125	1	0	0	0	0	0	0	0	1	12481	117	5	5		5	PRG4	1	186277383	Silent	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	3	186277383	62973238	11	15433	83	2									
ELK4	2005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205589534	205589534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ELK4	NM_021795	exon3	c.A640T	p.I214F	GAGAAATACTTGG	.	177	21	186	1	.	658	A	205589534	T	A	205589534	3	1	125	1	0	0	0	0	1	0	0	0	5061	1406	49	4	805	4	ELK4	1	205589534	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	19312151	205589534	43661087	12	15434											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237802427	237802427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RYR2	NM_001035	exon46	c.G7041A	p.M2347I	AGCAATGGAAGAA	.	201	93	199	0	.	158	A	237802427	G	A	237802427	3	1	125	1	0	0	0	0	1	0	0	0	13769	1348	47	3	7223	3	RYR2	1	237802427	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	32212893	237802427	11448194	13	15435											
POMC	5443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	25384548	25384548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	POMC	NM_001035256	exon4	c.C206G	p.P69R	GTCAGAGGCTGCT	.	80	19	113	0	.	91	C	25384548	G	C	25384548	3	2	125	1	0	0	0	0	1	0	0	0	12242	1000	35	4	601	4	POMC	2	25384548	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		25384548	217814825	14	15436											
SRBD1	55133	broad.mit.edu;bcgsc.ca	37	2	45616467	45616467	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SRBD1	NM_018079	exon21	c.C2970T	p.D990D	AATGAGGTCCAGA	.	98	5	159	0	.	90	A	45616467	G	A	45616467	2	1	125	1	0	0	0	0	0	0	0	1	15132	1252	44	3		3	SRBD1	2	45616467	Silent	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	20231919	45616467	197582906	15	15437											
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	139428887	139428887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NXPH2	NM_007226	exon2	c.A400G	p.I134V	CAACAATTTTCCC	.	113	30	191	0	.	72	C	139428887	T	C	139428887	3	2	125	1	0	0	0	0	1	0	0	0	10791	1493	52	2	398	2	NXPH2	2	139428887	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	93812420	139428887	103770486	16	15438											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179753268	179753268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC141	NM_173648	exon9	c.G1393T	p.G465C	GGTAACCCTCCAC	.	78	19	162	0	.	78	A	179753268	C	A	179753268	3	1	125	1	0	0	0	0	1	0	0	0	2775	638	22	3		3	CCDC141	2	179753268	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	40324381	179753268	63446105	17	15439											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198267752	198267752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B1	NM_012433	exon13	c.T1727C	p.V576A	ATGACCACGAGGA	.	90	23	149	0	.	140	G	198267752	A	G	198267752	3	3	125	1	0	0	0	0	1	0	0	0	14149	159	6	2	2239	2	SF3B1	2	198267752	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	18514484	198267752	44931621	18	15440											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212543852	212543852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ERBB4	NM_001042599	exon13	c.G1547T	p.G516V	TCTGGCCCAGGTC	.	172	43	256	0	.	1461	A	212543852	C	A	212543852	3	1	125	1	0	0	0	0	1	0	0	0	5209	623	22	3	2443	3	ERBB4	2	212543852	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	14276100	212543852	30655521	19	15441											
BARD1	580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215646146	215646146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BARD1	NM_000465	exon4	c.G452A	p.S151N	TTCTTACTTCGAG	.	42	7	102	0	.	415	T	215646146	C	T	215646146	3	4	125	1	0	0	0	0	1	0	0	0	1312	565	20	3	1913	3	BARD1	2	215646146	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	3102294	215646146	27553227	20	15442											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219619007	219619007	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TTLL4	NM_014640	exon20	c.T3495C	p.S1165S	CCTTTCTACCCAG	.	136	29	190	0	.	93	C	219619007	T	C	219619007	2	2	125	1	0	0	0	0	0	0	0	1	16726	1509	53	2		2	TTLL4	2	219619007	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	3972861	219619007	23580366	21	15443											
SGPP2	130367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223423159	223423159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SGPP2	NM_152386	exon5	c.C742T	p.L248F	AGCCCCCTCTTCC	.	211	55	356	0	.	91	T	223423159	C	T	223423159	3	4	125	1	0	0	0	0	1	0	0	0	14220	681	24	3	760	3	SGPP2	2	223423159	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	3804152	223423159	19776214	22	15444											
DNER	92737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230231627	230231627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNER	NM_139072	exon12	c.C2064A	p.S688R	GAACTCGCTGTCG	.	65	14	120	1	.	524	T	230231627	G	T	230231627	3	4	125	1	0	0	0	0	1	0	0	0	4667	1078	38	1	157	1	DNER	2	230231627	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	6808468	230231627	12967746	23	15445											
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30827899	30827899	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GADL1	NM_207359	exon14	c.1251-1G>A	.	AGGTACCTAAAAT	.	52	16	105	0	.	90	T	30827899	C	T	30827899	5	4	125	1	0	0	0	0	0	0	1	0	6185	695	24	3	327	3	GADL1	3	30827899	Splice_Site	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10		30827899	167194531	24	15446											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CTNNB1	NM_001098209	exon8	c.T1161A	p.N387K	CAGGAATCTTTCA	.	100	22	162	0	.	24361	A	41274911	T	A	41274911	3	1	125	1	0	0	0	0	1	0	0	0	4016	1432	50	4	1187	4	CTNNB1	3	41274911	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	10447012	41274911	156747519	25	15447											
CCDC36	339834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49294178	49294178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC36	NM_001135197	exon8	c.G1248A	p.M416I	AAGTATGTTTTTG	.	81	17	145	0	.	92	A	49294178	G	A	49294178	3	1	125	1	0	0	0	0	1	0	0	0	2808	1377	48	3	1274	3	CCDC36	3	49294178	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	8019267	49294178	148728252	26	15448											
ATXN7	6314	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	63898497	63898497	+	Missense_Mutation	SNP	A	A	G	rs199663915		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ATXN7	NM_000333	exon3	c.A223G	p.M75V	GCCGCAATGGCGA	.	48	15	57	0	A|0.996;G|0.004	90	G	63898497	A	G	63898497	3	3	125	1	0	0	0	0	1	0	0	0	1215	101	4	2	225	2	ATXN7	3	63898497	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	14604319	63898497	134123933	27	15449											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69084238	69084238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TMF1	NM_007114	exon9	c.G2180T	p.R727L	TCTGTACGCTGCA	.	122	41	183	0	.	90	A	69084238	C	A	69084238	3	1	125	1	0	0	0	0	1	0	0	0	16225	536	19	1	1137	1	TMF1	3	69084238	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	5185741	69084238	128938192	28	15450											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108220704	108220704	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MYH15	NM_014981	exon5	c.256-2A>G	.	AGACTCTGCAGAG	.	77	19	148	0	.	73	C	108220704	T	C	108220704	5	2	125	1	0	0	0	0	0	0	1	0	10034	1594	55	2	5742	2	MYH15	3	108220704	Splice_Site	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	39136466	108220704	89801726	29	15451											
CD200R1L	344807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112548190	112548190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD200R1L	NM_001008784	exon2	c.A88G	p.N30D	AATAGTTCTGTGT	.	157	34	231	0	.	91	C	112548190	T	C	112548190	3	2	125	1	0	0	0	0	1	0	0	0	2982	1783	62	2	747	2	CD200R1L	3	112548190	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	4327486	112548190	85474240	30	15452											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113720527	113720527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIAA1407	NM_020817	exon13	c.A2078G	p.Q693R	TCCTCTTGGGCCT	.	211	63	319	0	.	92	C	113720527	T	C	113720527	3	2	125	1	0	0	0	0	1	0	0	0	8229	1812	63	2	752	2	KIAA1407	3	113720527	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	1172337	113720527	84301903	31	15453											
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71508497	71508497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ENAM	NM_031889	exon9	c.A1354G	p.K452E	CCTACAAAGAATC	.	46	12	92	0	.	93	G	71508497	A	G	71508497	3	3	125	1	0	0	0	0	1	0	0	0	5112	15	1	2	1384	2	ENAM	4	71508497	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		71508497	119645779	32	15454											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274387	74274388	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALB	NM_000477	exon4	c.347_348insA	p.A116fs	GCTGTGCAAAACA	.	77	19	141	0	.	96	A	74274388	-	A	74274387	7	5	125	1	0	1	1	0	0	0	0	0	486	710	25	0	361	0	ALB	4	74274387	Frame_Shift_Ins	INS	-	TCGA-EP-A3JL-01A-11D-A20W-10	2765890	74274387	116879889	33	15455											
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90856345	90856345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MMRN1	NM_007351	exon6	c.C1514A	p.S505Y	ATGAATCCCTCAA	.	134	26	216	0	.	94	A	90856345	C	A	90856345	3	1	125	1	0	0	0	0	1	0	0	0	9670	855	30	3	1536	3	MMRN1	4	90856345	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	16581958	90856345	100297931	34	15456											
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	95198291	95198291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SMARCAD1	NM_001128429	exon16	c.G2063T	p.R688I	TACGAAGAATGTT	.	84	19	125	0	.	229	T	95198291	G	T	95198291	3	4	125	1	0	0	0	0	1	0	0	0	14772	942	33	3	2121	3	SMARCAD1	4	95198291	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	4341946	95198291	95955985	35	15457											
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126367520	126367520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAT4	NM_024582	exon8	c.G7266T	p.L2422F	CGCATTGTTAGAT	.	48	13	110	1	.	108	T	126367520	G	T	126367520	3	4	125	1	0	0	0	0	1	0	0	0	5692	1368	48	3	7296	3	FAT4	4	126367520	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	31169229	126367520	64786756	36	15458											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13794081	13794081	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNAH5	NM_001369	exon48	c.T7974C	p.D2658D	ATTCACATCATCA	.	225	118	243	0	.	182	G	13794081	A	G	13794081	2	3	125	1	0	0	0	0	0	0	0	1	4604	214	8	2		2	DNAH5	5	13794081	Silent	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		13794081	167121179	37	15459											
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19483500	19483500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDH18	NM_004934	exon12	c.C1792T	p.R598W	AGGTCCGCACACG	.	322	61	234	0	.	159	A	19483500	G	A	19483500	3	1	125	1	0	0	0	0	1	0	0	0	3103	1088	38	1	588	1	CDH18	5	19483500	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	5689419	19483500	161431760	38	15460											
RAD1	5810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34914840	34914840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RAD1	NM_002853	exon2	c.T158C	p.V53A	TTTTCCACTGTTA	.	185	116	179	1	.	227	G	34914840	A	G	34914840	3	3	125	1	0	0	0	0	1	0	0	0	12978	159	6	2	710	2	RAD1	5	34914840	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	15431340	34914840	146000420	39	15461											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37226698	37226698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	C5orf42	NM_023073	exon12	c.A1999T	p.T667S	TTACAGTATTTGA	.	184	41	142	0	.	94	A	37226698	T	A	37226698	3	1	125	1	0	0	0	0	1	0	0	0	2301	1638	57	4	7758	4	C5orf42	5	37226698	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	2311858	37226698	143688562	40	15462											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71489897	71489897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MAP1B	NM_005909	exon5	c.G715A	p.V239I	GTGGAAGTCCCAT	.	83	13	144	0	.	155	A	71489897	G	A	71489897	3	1	125	1	0	0	0	0	1	0	0	0	9228	1029	36	3	733	3	MAP1B	5	71489897	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	34263199	71489897	109425363	41	15463											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89989829	89989829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GPR98	NM_032119	exon33	c.C7256A	p.P2419H	GGGTGCCTGACCC	.	109	31	169	0	.	103	A	89989829	C	A	89989829	3	1	125	1	0	0	0	0	1	0	0	0	6721	681	24	3	7386	3	GPR98	5	89989829	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	18499932	89989829	90925431	42	15464											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153149817	153149817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GRIA1	NM_001258021	exon13	c.G2142A	p.M714I	GGGGATGATTCGA	.	122	63	181	0	.	96	A	153149817	G	A	153149817	3	1	125	1	0	0	0	0	1	0	0	0	6767	1290	45	3	2162	3	GRIA1	5	153149817	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	63159988	153149817	27765443	43	15465											
ARG1	383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	131904974	131904974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARG1	NM_001244438	exon8	c.A919G	p.I307V	GTTGCAATAACCT	.	78	44	85	0	.	91	G	131904974	A	G	131904974	3	3	125	1	0	0	0	0	1	0	0	0	857	101	4	2	925	2	ARG1	6	131904974	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		131904974	39210093	44	15466											
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95222151	95222151	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PDK4	NM_002612	exon4	c.C450T	p.V150V	ATTGGTGACTGGG	.	129	35	189	0	.	358	A	95222151	G	A	95222151	2	1	125	1	0	0	0	0	0	0	0	1	11678	1277	45	3		3	PDK4	7	95222151	Silent	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		95222151	63916512	45	15467											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412172	81412172	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZBTB10	NM_023929	exon2	c.A1416G	p.P472P	AGCTCCAGAGTCT	.	77	16	68	0	.	522	G	81412172	A	G	81412172	2	3	125	1	0	0	0	0	0	0	0	1	17520	175	7	2		2	ZBTB10	8	81412172	Silent	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		81412172	64951850	46	15468											
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu	37	8	145641255	145641255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC39A4	NM_130849	exon2	c.C413T	p.P138L	AGGCCCGGGGTCA	.	111	7	19	0	.	90	A	145641255	G	A	145641255	3	1	125	1	0	0	0	0	1	0	0	0	14620	1116	39	1	1574	1	SLC39A4	8	145641255	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	64229083	145641255	722767	47	15469											
ZCCHC7	84186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37302184	37302184	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZCCHC7	NM_032226	exon3	c.611-1G>A	.	TTTGTAGGAGAAG	.	38	7	75	0	.	92	A	37302184	G	A	37302184	5	1	125	1	0	0	0	0	0	0	1	0	17590	1014	35	3	616	3	ZCCHC7	9	37302184	Splice_Site	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		37302184	103911247	48	15470											
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96318785	96318785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM120A	NM_014612	exon13	c.G2396T	p.W799L	GTCCTTGGATGTA	.	132	34	180	0	.	90	T	96318785	G	T	96318785	3	4	125	1	0	0	0	0	1	0	0	0	5415	1357	47	3	2446	3	FAM120A	9	96318785	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	59016601	96318785	44894646	49	15471											
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97063227	97063227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.T1387C	p.C463R	CCTGATTGTGGGC	.	77	17	99	0	.	92	C	97063227	T	C	97063227	3	2	125	1	0	0	0	0	1	0	0	0	17739	1812	63	2	1401	2	ZNF169	9	97063227	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	744442	97063227	44150204	50	15472	84	2									
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97063234	97063234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.G1394C	p.R465P	GTGGGCGTGGCTT	.	82	16	114	0	.	92	C	97063234	G	C	97063234	3	2	125	1	0	0	0	0	1	0	0	0	17739	1145	40	4	1408	4	ZNF169	9	97063234	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	7	97063234	44150197	51	15473	84	2									
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	7327859	7327859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.C494A	p.S165X	GTCCTCGAACCAG	.	179	31	233	0	.	141	T	7327859	G	T	7327859	4	4	125	1	0	0	0	0	0	1	0	0	14158	1059	37	1	2258	1	SFMBT2	10	7327859	Nonsense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		7327859	128206888	52	15474	85	2									
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7327860	7327860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.T493A	p.S165T	TCCTCGAACCAGT	.	179	31	233	0	.	141	T	7327860	A	T	7327860	3	4	125	1	0	0	0	0	1	0	0	0	14158	246	9	4	2259	4	SFMBT2	10	7327860	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	1	7327860	128206887	53	15475	85	2									
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45939709	45939709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALOX5	NM_000698	exon13	c.C1820T	p.A607V	TGTGGGCGCTGAG	.	118	11	102	0	.	228	T	45939709	C	T	45939709	3	4	125	1	0	0	0	0	1	0	0	0	540	768	27	1	1870	1	ALOX5	10	45939709	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	38611849	45939709	89595038	54	15476											
ACTR1A	10121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104247919	104247919	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACTR1A	NM_005736	exon4	c.T303G	p.T101T	TGAGAAAGTCTGC	.	73	17	129	0	.	90	C	104247919	A	C	104247919	2	2	125	1	0	0	0	0	0	0	0	1	209	59	3	5		5	ACTR1A	10	104247919	Silent	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	58308210	104247919	31286828	55	15477											
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111883814	111883814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADD3	NM_001121	exon10	c.C1183G	p.R395G	CTCATTCGAGAGA	.	72	22	75	0	.	157	G	111883814	C	G	111883814	3	3	125	1	0	0	0	0	1	0	0	0	306	876	31	4	1217	4	ADD3	10	111883814	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	7635895	111883814	23650933	56	15478											
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11963990	11963990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	USP47	NM_017944	exon19	c.C2218G	p.L740V	GTTTTGCTACCTG	.	67	14	113	0	.	660	G	11963990	C	G	11963990	3	3	125	1	0	0	0	0	1	0	0	0	17075	796	28	4	2292	4	USP47	11	11963990	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10		11963990	123042526	57	15479											
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57995759	57995759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	OR10Q1	NM_001004471	exon1	c.A589T	p.I197F	CGCGGATGTCAGC	.	114	42	172	0	.	70	A	57995759	T	A	57995759	3	1	125	1	0	0	0	0	1	0	0	0	10916	1464	51	4	374	4	OR10Q1	11	57995759	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	46031769	57995759	77010757	58	15480											
MS4A15	219995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60543106	60543106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MS4A15	NM_001098835	exon7	c.G641A	p.S214N	CCTTCAGCGCAGA	.	45	17	99	0	.	69	A	60543106	G	A	60543106	3	1	125	1	0	0	0	0	1	0	0	0	9859	971	34	3	663	3	MS4A15	11	60543106	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	2547347	60543106	74463410	59	15481											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	120989400	120989400	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TECTA	NM_005422	exon6	c.C1176T	p.I392I	TCTCATCCCCAAA	.	54	12	89	0	.	225	T	120989400	C	T	120989400	2	4	125	1	0	0	0	0	0	0	0	1	15744	845	30	3		3	TECTA	11	120989400	Silent	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	60446294	120989400	14017116	60	15482											
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	93835640	93835640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	UBE2N	NM_003348	exon1	c.G21T	p.R7S	GATGATCCTGCGG	.	199	55	257	0	.	659	A	93835640	C	A	93835640	3	1	125	1	0	0	0	0	1	0	0	0	16863	854	30	3	453	3	UBE2N	12	93835640	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10		93835640	40016255	61	15483											
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	125451669	125451669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DHX37	NM_032656	exon11	c.G1504A	p.E502K	CTTTACCTTGTGG	.	87	7	103	0	.	227	T	125451669	C	T	125451669	3	4	125	1	0	0	0	0	1	0	0	0	4510	695	24	3	2037	3	DHX37	12	125451669	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	31616029	125451669	8400226	62	15484											
PGAM5	192111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133291565	133291565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PGAM5	NM_138575	exon2	c.C313T	p.H105Y	ATCAGGCATTCCC	.	112	25	185	0	.	90	T	133291565	C	T	133291565	3	4	125	1	0	0	0	0	1	0	0	0	11776	710	25	3	319	3	PGAM5	12	133291565	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	7839896	133291565	560330	63	15485											
ZMYM5	9205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20411886	20411886	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZMYM5	NM_001039650	exon6	c.A948G	p.T316T	ACAAGATGTACTA	.	76	12	168	0	.	90	C	20411886	T	C	20411886	2	2	125	1	0	0	0	0	0	0	0	1	17700	1451	51	2		2	ZMYM5	13	20411886	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10		20411886	94757992	64	15486											
STARD13	90627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33703451	33703451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	STARD13	NM_178006	exon5	c.C1363G	p.R455G	TGACTCGGCTGGC	.	66	20	121	0	.	94	C	33703451	G	C	33703451	3	2	125	1	0	0	0	0	1	0	0	0	15255	1124	39	4	2018	4	STARD13	13	33703451	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	13291565	33703451	81466427	65	15487											
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38211433	38211433	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TRPC4	NM_003306	exon11	c.A2556G	p.L852L	ATGAAATAACCCA	.	72	26	141	0	.	159	C	38211433	T	C	38211433	2	2	125	1	0	0	0	0	0	0	0	1	16577	1403	49	2		2	TRPC4	13	38211433	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	4507982	38211433	76958445	66	15488											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39261907	39261907	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FREM2	NM_207361	exon1	c.C426A	p.G142G	CCTGGGCGCGCGC	.	42	17	12	0	.	100	A	39261907	C	A	39261907	2	1	125	1	0	0	0	0	0	0	0	1	6045	755	27	1		1	FREM2	13	39261907	Silent	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	1050474	39261907	75907971	67	15489											
EFNB2	1948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	107164993	107164993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EFNB2	NM_004093	exon2	c.C290T	p.P97L	AGGAGAGGGGTAT	.	123	36	225	0	.	91	A	107164993	G	A	107164993	3	1	125	1	0	0	0	0	1	0	0	0	4956	1000	35	3	727	3	EFNB2	13	107164993	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	67903086	107164993	8004885	68	15490											
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	35871997	35872005	+	In_Frame_Del	DEL	CCAAGGACA	CCAAGGACA	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CCAAGGACA	CCAAGGACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NFKBIA	NM_020529	exon4	c.608_616del	p.203_206del	CAGCACCCAAGGA	.	77	12	110	0	.	721	-	35872005	CCAAGGACA	-	35871997	7	5	125	1	0	1	0	1	0	0	0	0	10377	623	22	0	349	0	NFKBIA	14	35871997	In_Frame_Del	DEL	CCAAGGACA	TCGA-EP-A3JL-01A-11D-A20W-10		35871997	71477543	69	15491											
MNS1	55329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56748716	56748716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MNS1	NM_018365	exon3	c.G229C	p.E77Q	TTTCTTCTGCCTG	.	104	32	279	0	.	91	G	56748716	C	G	56748716	3	3	125	1	0	0	0	0	1	0	0	0	9677	922	32	4	1290	4	MNS1	15	56748716	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10		56748716	45782676	70	15492											
SPESP1	246777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69238762	69238762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPESP1	NM_145658	exon2	c.G889C	p.E297Q	GACATCGAAACTG	.	51	12	127	0	.	90	C	69238762	G	C	69238762	3	2	125	1	0	0	0	0	1	0	0	0	15039	1059	37	4	895	4	SPESP1	15	69238762	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	12490046	69238762	33292630	71	15493											
TBC1D21	161514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74177139	74177139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TBC1D21	NM_153356	exon5	c.A385C	p.I129L	CAGAAAATCTATG	.	88	33	109	0	.	92	C	74177139	A	C	74177139	3	2	125	1	0	0	0	0	1	0	0	0	15607	101	4	5	403	5	TBC1D21	15	74177139	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	4938377	74177139	28354253	72	15494											
ADAMTSL3	57188	ucsc.edu;bcgsc.ca	37	15	84611387	84611387	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADAMTSL3	NM_207517	exon18	c.T2157C	p.C719C	TACCTGTGGAGTT	.	35	4	60	0	.	1153	C	84611387	T	C	84611387	2	2	125	1	0	0	0	0	0	0	0	1	276	1702	59	2		2	ADAMTSL3	15	84611387	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	10434248	84611387	17920005	73	15495											
CRTC3	64784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91150628	91150628	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CRTC3	NM_022769	exon6	c.T495C	p.A165A	TTCTGCTCTTCAC	.	38	5	58	0	.	393	C	91150628	T	C	91150628	2	2	125	1	0	0	0	0	0	0	0	1	3901	1538	54	2		2	CRTC3	15	91150628	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	6539241	91150628	11380764	74	15496											
WDR24	84219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	735892	735892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon5	c.C1550T	p.S517L	GTGGCCGAGGAGT	.	93	30	132	0	.	91	A	735892	G	A	735892	3	1	125	1	0	0	0	0	1	0	0	0	17278	1059	37	1	842	1	WDR24	16	735892	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		735892	89618861	75	15497											
WDR24	84219	ucsc.edu;bcgsc.ca	37	16	737415	737415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon3	c.G661A	p.G221S	ACCAGCCCCTGTG	.	29	4	38	0	.	91	T	737415	C	T	737415	3	4	125	1	0	0	0	0	1	0	0	0	17278	637	22	3	1739	3	WDR24	16	737415	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	1523	737415	89617338	76	15498											
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	22162149	22162150	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	.	.	.	p.S1088*	CCATTTCCTTGAA	.	70	17	108	0	.	.	AA	22162150	CC	AA	22162149	4	1	125	1	0	0	0	0	0	1	0	0	17237	855	30	3	3381	3	VWA3A	16	22162149	Nonsense_Mutation	DNP	CC	TCGA-EP-A3JL-01A-11D-A20W-10	21424734	22162149	68192604	77	15499											
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70595533	70595533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B3	NM_012426	exon17	c.G2134A	p.V712I	CCTCAGGTATTGG	.	46	8	79	0	.	91	A	70595533	G	A	70595533	3	1	125	1	0	0	0	0	1	0	0	0	14152	1275	44	3	2196	3	SF3B3	16	70595533	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	48433384	70595533	19759220	78	15500											
CDH13	1012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83816877	83816877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDH13	NM_001220488	exon14	c.G2075T	p.S692I	TGGTAAGCCTTCT	.	49	14	92	1	.	67	T	83816877	G	T	83816877	3	4	125	1	0	0	0	0	1	0	0	0	3099	971	34	3	1984	3	CDH13	16	83816877	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	13221344	83816877	6537876	79	15501											
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8051980	8051980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PER1	NM_002616	exon8	c.A1030G	p.I344V	AATGGATGCGCTC	.	72	19	64	0	.	723	C	8051980	T	C	8051980	3	2	125	1	0	0	0	0	1	0	0	0	11729	1464	51	2	2906	2	PER1	17	8051980	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10		8051980	73143230	80	15502											
BPTF	2186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65822352	65822352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BPTF	NM_004459	exon1	c.A512G	p.D171G	ACGACGATGACTC	.	114	17	222	1	.	94	G	65822352	A	G	65822352	3	3	125	1	0	0	0	0	1	0	0	0	1495	333	12	2	514	2	BPTF	17	65822352	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	57770372	65822352	15372858	81	15503											
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72539019	72539019	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.G508T	p.E170X	TGGGTTCGGGGCT	.	118	37	144	0	.	90	A	72539019	C	A	72539019	4	1	125	1	0	0	0	0	0	1	0	0	2997	893	31	1	174	1	CD300C	17	72539019	Nonsense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	6716667	72539019	8656191	82	15504	86	2									
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72539020	72539020	+	Silent	SNP	G	G	T	rs147705680	alternate_allele	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.C507A	p.P169P	GGGTTCGGGGCTG	.	121	37	145	0	G|1.000;A|0.000	90	T	72539020	G	T	72539020	2	4	125	1	0	0	0	0	0	0	0	1	2997	1103	39	1		1	CD300C	17	72539020	Silent	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	1	72539020	8656190	83	15505	86	2									
ACOX1	51	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73975154	73975154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACOX1	NM_007292	exon1	c.A1C	p.M1L	GGTTCATGGCGAC	.	36	8	61	0	.	91	G	73975154	T	G	73975154	3	3	125	1	0	0	0	0	1	0	0	0	158	1464	51	5	2202	5	ACOX1	17	73975154	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	1436134	73975154	7220056	84	15506											
EVPL	2125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74011082	74011082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EVPL	NM_001988	exon17	c.T2137A	p.F713I	GGCAGAACTCCTG	.	52	5	38	0	.	93	T	74011082	A	T	74011082	3	4	125	1	0	0	0	0	1	0	0	0	5292	43	2	4	3988	4	EVPL	17	74011082	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	35928	74011082	7184128	85	15507											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50918256	50918256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DCC	NM_005215	exon17	c.A2687G	p.K896R	AATACAAGGTGAA	.	49	20	52	0	.	225	G	50918256	A	G	50918256	3	3	125	1	0	0	0	0	1	0	0	0	4282	86	3	2	2753	2	DCC	18	50918256	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		50918256	27158992	86	15508											
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4224480	4224480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ANKRD24	NM_133475	exon22	c.G3419C	p.R1140T	TGCAGAGACTCCA	.	48	15	84	0	.	68	C	4224480	G	C	4224480	3	2	125	1	0	0	0	0	1	0	0	0	653	942	33	4	3501	4	ANKRD24	19	4224480	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		4224480	54904503	87	15509											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8994178	8994178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MUC16	NM_024690	exon65	c.G41507T	p.G13836V	AGAGGGCCAACAC	.	93	22	123	0	.	566	A	8994178	C	A	8994178	3	1	125	1	0	0	0	0	1	0	0	0	9973	739	26	3	2096	3	MUC16	19	8994178	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	4769698	8994178	50134805	88	15510											
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36220117	36220117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MLL4	NM_014727	exon22	c.A4837G	p.I1613V	TGTGCCATCTGGT	.	132	37	153	1	.	697	G	36220117	A	G	36220117	3	3	125	1	0	0	0	0	1	0	0	0	9623	217	8	2	4923	2	MLL4	19	36220117	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10	27225939	36220117	22908866	89	15511											
RASGRP4	115727	broad.mit.edu;bcgsc.ca	37	19	38905729	38905729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASGRP4	NM_170604	exon9	c.A989G	p.H330R	TTGTTGTGGGAGG	.	140	6	144	1	.	660	C	38905729	T	C	38905729	3	2	125	1	0	0	0	0	1	0	0	0	13077	1696	59	2	1068	2	RASGRP4	19	38905729	Missense_Mutation	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	2685612	38905729	20223254	90	15512											
KLK8	11202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51503826	51503826	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KLK8	NM_144505	exon3	c.A219T	p.A73A	CTCCTGTGCCCTG	.	74	28	101	0	.	604	A	51503826	T	A	51503826	2	1	125	1	0	0	0	0	0	0	0	1	8410	1683	59	4		4	KLK8	19	51503826	Silent	SNP	T	TCGA-EP-A3JL-01A-11D-A20W-10	12598097	51503826	7625157	91	15513											
LILRA6	79168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54746124	54746124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRA6	NM_024318	exon3	c.G133A	p.V45M	TGGTCACGGGGCT	.	379	57	601	0	.	24	T	54746124	C	T	54746124	3	4	125	1	0	0	0	0	1	0	0	0	8789	536	19	1	1336	1	LILRA6	19	54746124	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	3242298	54746124	4382859	92	15514											
LILRB4	11006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55176617	55176617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRB4	NM_006847	exon6	c.C743T	p.S248L	CAGGGTCAGTCCC	.	162	38	225	0	.	93	T	55176617	C	T	55176617	3	4	125	1	0	0	0	0	1	0	0	0	8793	838	29	3	765	3	LILRB4	19	55176617	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10	430493	55176617	3952366	93	15515											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61978128	61978128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CHRNA4	NM_000744	exon6	c.G1846T	p.G616C	AGAGGCCCACCGT	.	72	29	57	0	.	91	A	61978128	C	A	61978128	3	1	125	1	0	0	0	0	1	0	0	0	3385	623	22	3	41	3	CHRNA4	20	61978128	Missense_Mutation	SNP	C	TCGA-EP-A3JL-01A-11D-A20W-10		61978128	1047392	94	15516											
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15873032	15873032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SAMSN1	NM_001256370	exon7	c.T790C	p.C264R	TTTTGCAAATAAT	.	98	12	180	0	.	94	G	15873032	A	G	15873032	3	3	125	1	0	0	0	0	1	0	0	0	13830	130	5	2	547	2	SAMSN1	21	15873032	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		15873032	32256863	95	15517											
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	38865436	38865436	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DYRK1A	NM_001396	exon7	c.G1069T	p.G357X	CACACTGGAGAAC	.	73	16	132	0	.	792	T	38865436	G	T	38865436	4	4	125	1	0	0	0	0	0	1	0	0	4854	1349	47	3	1095	3	DYRK1A	21	38865436	Nonsense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	22992404	38865436	9264459	96	15518											
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17450871	17450871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GAB4	NM_001037814	exon4	c.C899A	p.T300N	CCTCTGGTGTGGC	.	77	29	152	0	.	91	T	17450871	G	T	17450871	3	4	125	1	0	0	0	0	1	0	0	0	6151	1261	44	3	853	3	GAB4	22	17450871	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10		17450871	33853695	97	15519											
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35947948	35947948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASD2	NM_014310	exon3	c.G670A	p.E224K	GTCAAGGAGATGG	.	54	15	74	0	.	659	A	35947948	G	A	35947948	3	1	125	1	0	0	0	0	1	0	0	0	13067	1175	41	3	676	3	RASD2	22	35947948	Missense_Mutation	SNP	G	TCGA-EP-A3JL-01A-11D-A20W-10	18497077	35947948	15356618	98	15520											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4968507	4968507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_032972	exon2	c.A2888G	p.D963G	AGCCTGACAGCCC	.	46	21	59	0	.	.	G	4968507	A	G	4968507	3	3	125	1	0	0	0	0	1	0	0	0	11509	275	10	2	2930	2	PCDH11Y	24	4968507	Missense_Mutation	SNP	A	TCGA-EP-A3JL-01A-11D-A20W-10		4968507	54405059	99	15521											
THAP3	90326	broad.mit.edu;bcgsc.ca	37	1	6692557	6692557	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	THAP3	NM_001195753	exon5	c.438+2T>C	.	AACAGGTAAGACT	.	60	4	72	1	.	514	C	6692557	T	C	6692557	5	2	126	1	0	0	0	0	0	0	1	0	15842	1652	57	2	475	2	THAP3	1	6692557	Splice_Site	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10		6692557	242558064	1	15522											
GLIS1	148979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53974802	53974802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GLIS1	NM_147193	exon9	c.C1696T	p.P566S	TGGCAGGCAAGGG	.	56	9	39	0	.	91	A	53974802	G	A	53974802	3	1	126	1	0	0	0	0	1	0	0	0	6445	1203	42	3	174	3	GLIS1	1	53974802	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	47282245	53974802	195275819	2	15523											
PALMD	54873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	100154970	100154970	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PALMD	NM_017734	exon7	c.C1154G	p.S385X	ATTCTTCACCCAC	.	77	19	88	0	.	71	G	100154970	C	G	100154970	4	3	126	1	0	0	0	0	0	1	0	0	11411	838	29	4	1180	4	PALMD	1	100154970	Nonsense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	46180168	100154970	149095651	3	15524											
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186880477	186880477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PLA2G4A	NM_024420	exon7	c.C514T	p.L172F	AAGAAACTCTTGG	.	133	24	124	0	.	721	T	186880477	C	T	186880477	3	4	126	1	0	0	0	0	1	0	0	0	12001	565	20	3	536	3	PLA2G4A	1	186880477	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	86725507	186880477	62370144	4	15525											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	197094016	197094016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ASPM	NM_001206846	exon12	c.T3152C	p.I1051T	AACGCTATTTTCC	.	201	15	127	0	.	615	G	197094016	A	G	197094016	3	3	126	1	0	0	0	0	1	0	0	0	1056	449	16	2	7349	2	ASPM	1	197094016	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	10213539	197094016	52156605	5	15526											
CHML	1122	broad.mit.edu;ucsc.edu	37	1	241798393	241798393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CHML	NM_001821	exon1	c.G676A	p.G226S	TCCTGCCTTCTTT	.	153	22	99	1	.	96	T	241798393	C	T	241798393	3	4	126	1	0	0	0	0	1	0	0	0	3351	681	24	3	1298	3	CHML	1	241798393	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	44704377	241798393	7452228	6	15527											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11738862	11738862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GREB1	NM_014668	exon15	c.C2209G	p.Q737E	GTGGAACAGTATG	.	87	25	85	0	.	91	G	11738862	C	G	11738862	3	3	126	1	0	0	0	0	1	0	0	0	6760	479	17	4	2371	4	GREB1	2	11738862	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		11738862	231460511	7	15528											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980355	23980355	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ATAD2B	NM_017552	exon25	c.T4011C	p.C1337C	ATTGCTACATTCC	.	160	39	167	0	.	68	G	23980355	A	G	23980355	2	3	126	1	0	0	0	0	0	0	0	1	1072	389	14	2		2	ATAD2B	2	23980355	Silent	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	12241493	23980355	219219018	8	15529											
DGUOK	1716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74185303	74185303	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DGUOK	NM_080916	exon6	c.A738G	p.P246P	CATTCCAGTGCTG	.	174	36	147	0	.	115	G	74185303	A	G	74185303	2	3	126	1	0	0	0	0	0	0	0	1	4475	175	7	2		2	DGUOK	2	74185303	Silent	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	50204948	74185303	169014070	9	15530											
ACTR1B	10120	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98275456	98275456	+	Missense_Mutation	SNP	A	A	C	rs148249069	alternate_allele	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ACTR1B	NM_005735	exon5	c.T326G	p.L109R	GTGAGGAGCACAG	.	36	6	46	0	A|1.000;T|0.000	91	C	98275456	A	C	98275456	3	2	126	1	0	0	0	0	1	0	0	0	210	304	11	5	832	5	ACTR1B	2	98275456	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	24090153	98275456	144923917	10	15531											
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	103039738	103039738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	IL18RAP	NM_003853	exon3	c.A1T	p.M1L	AGAACAATGCTCT	.	185	44	195	0	.	95	T	103039738	A	T	103039738	3	4	126	1	0	0	0	0	1	0	0	0	7648	101	4	4	3	4	IL18RAP	2	103039738	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	4764282	103039738	140159635	11	15532											
GPR17	2840	ucsc.edu;bcgsc.ca	37	2	128408409	128408409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GPR17	NM_005291	exon3	c.T184C	p.F62L	ATGCTGTTCGCCT	.	35	4	60	0	.	514	C	128408409	T	C	128408409	3	2	126	1	0	0	0	0	1	0	0	0	6667	1725	60	2	190	2	GPR17	2	128408409	Missense_Mutation	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	25368671	128408409	114790964	12	15533											
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131797718	131797718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ARHGEF4	NM_032995	exon7	c.C877T	p.L293F	GAGATCCTCAGCA	.	26	6	31	0	.	292	T	131797718	C	T	131797718	3	4	126	1	0	0	0	0	1	0	0	0	908	681	24	3	895	3	ARHGEF4	2	131797718	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	3389309	131797718	111401655	13	15534											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220326612	220326612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPEG	NM_005876	exon7	c.A2449G	p.T817A	GGGTCTACATCCC	.	75	15	76	0	.	383	G	220326612	A	G	220326612	3	3	126	1	0	0	0	0	1	0	0	0	15035	391	14	2	2475	2	SPEG	2	220326612	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	88528894	220326612	22872761	14	15535											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239161713	239161713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PER2	NM_022817	exon19	c.G2951T	p.R984L	CTGCTGCGGGACT	.	56	14	61	0	.	154	A	239161713	C	A	239161713	3	1	126	1	0	0	0	0	1	0	0	0	11730	768	27	1	836	1	PER2	2	239161713	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	18835101	239161713	4037660	15	15536											
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776140	9776140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BRPF1	NM_001003694	exon2	c.C316T	p.R106C	CATGGCCGCGTCC	.	68	7	59	0	.	92	T	9776140	C	T	9776140	3	4	126	1	0	0	0	0	1	0	0	0	1520	652	23	1	318	1	BRPF1	3	9776140	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		9776140	188246290	16	15537											
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38597244	38597244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SCN5A	NM_198056	exon26	c.G4445T	p.G1482V	TCCTGGCCCCCTA	.	116	14	122	0	.	98	A	38597244	C	A	38597244	3	1	126	1	0	0	0	0	1	0	0	0	13922	739	26	3	1617	3	SCN5A	3	38597244	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	28821104	38597244	159425186	17	15538											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	rs28931589	bycluster	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101A	p.G34E	ACTCTGGAATCCA	.	174	30	192	0	G|1.000;T|0.000	24361	A	41266104	G	A	41266104	3	1	126	1	0	0	0	0	1	0	0	0	4016	1174	41	3	107	3	CTNNB1	3	41266104	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	2668860	41266104	156756326	18	15539											
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186269064	186269064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TBCCD1	NM_001134415	exon7	c.C1549A	p.Q517K	TCCTTTGATCCCT	.	108	19	94	0	.	108	T	186269064	G	T	186269064	3	4	126	1	0	0	0	0	1	0	0	0	15629	1299	45	3	128	3	TBCCD1	3	186269064	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	145002960	186269064	11753366	19	15540											
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36230363	36230363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ARAP2	NM_015230	exon2	c.A746G	p.Q249R	TCTCCTTGAAACT	.	193	39	170	0	.	93	C	36230363	T	C	36230363	3	2	126	1	0	0	0	0	1	0	0	0	839	1812	63	2	4496	2	ARAP2	4	36230363	Missense_Mutation	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10		36230363	154923913	20	15541											
NPY2R	4887	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156135479	156135479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NPY2R	NM_000910	exon2	c.C388A	p.Q130K	TATGCCCAGGGCC	.	47	6	42	1	.	523	A	156135479	C	A	156135479	3	1	126	1	0	0	0	0	1	0	0	0	10609	595	21	3	390	3	NPY2R	4	156135479	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	119905116	156135479	35018797	21	15542											
TMED7-TICAM2	100302736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114952130	114952130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001164468	exon3	c.T451C	p.C151R	AAACACAGGCAGA	.	121	25	87	0	.	.	G	114952130	A	G	114952130	3	3	126	1	0	0	0	0	1	0	0	0	16007	188	7	2	123	2	TMED7-TICAM2	5	114952130	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10		114952130	65963130	22	15543											
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134152221	134152221	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DDX46	NM_014829	exon19	c.T2538A	p.A846A	AAATGCTGAGAAA	.	67	12	69	0	.	227	A	134152221	T	A	134152221	2	1	126	1	0	0	0	0	0	0	0	1	4364	1567	55	4		4	DDX46	5	134152221	Silent	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	19200091	134152221	46763039	23	15544											
PDE6A	5145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149324082	149324082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PDE6A	NM_000440	exon1	c.C155T	p.P52L	CTGCTCGGGGAGT	.	48	9	59	0	.	92	A	149324082	G	A	149324082	3	1	126	1	0	0	0	0	1	0	0	0	11645	1116	39	1	2515	1	PDE6A	5	149324082	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	15171861	149324082	31591178	24	15545											
TBC1D7	51256	broad.mit.edu;mdanderson.org	37	6	13321159	13321159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TBC1D7	NM_001143965	exon4	c.G362T	p.R121L	GGACTTCGAGGTA	.	41	7	37	0	.	91	A	13321159	C	A	13321159	3	1	126	1	0	0	0	0	1	0	0	0	15621	884	31	1	539	1	TBC1D7	6	13321159	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		13321159	157793908	25	15546											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42612241	42612241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	UBR2	NM_015255	exon20	c.G2251A	p.E751K	CTAATAGAAGAAA	.	96	22	64	0	.	94	A	42612241	G	A	42612241	3	1	126	1	0	0	0	0	1	0	0	0	16899	943	33	3	2475	3	UBR2	6	42612241	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	29291082	42612241	128502826	26	15547											
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	130455007	130455007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	L3MBTL3	NM_032438	exon22	c.G2156C	p.S719T	TACAGAGCTTACC	.	30	6	62	0	.	96	C	130455007	G	C	130455007	3	2	126	1	0	0	0	0	1	0	0	0	8593	971	34	4	2234	4	L3MBTL3	6	130455007	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	87842766	130455007	40660060	27	15548											
MRPS24	64951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43906467	43906467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MRPS24	NM_032014	exon4	c.G335A	p.R112H	CCCCGGCGCTTTA	.	52	11	41	0	.	90	T	43906467	C	T	43906467	3	4	126	1	0	0	0	0	1	0	0	0	9835	768	27	1	172	1	MRPS24	7	43906467	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		43906467	115232196	28	15549											
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51287547	51287547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	COBL	NM_015198	exon2	c.G136A	p.G46R	GCGACCCGAGGGC	.	62	10	74	0	.	95	T	51287547	C	T	51287547	3	4	126	1	0	0	0	0	1	0	0	0	3653	652	23	1	3697	1	COBL	7	51287547	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	7381080	51287547	107851116	29	15550											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83592651	83592651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SEMA3A	NM_006080	exon16	c.G1730A	p.G577D	CTGTGGCCATGGT	.	62	10	75	0	.	156	T	83592651	C	T	83592651	3	4	126	1	0	0	0	0	1	0	0	0	14024	739	26	3	593	3	SEMA3A	7	83592651	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	32305104	83592651	75546012	30	15551											
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	13259101	13259101	+	Missense_Mutation	SNP	G	G	A	rs144283917	byfrequency	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DLC1	NM_182643	exon3	c.C1051T	p.R351W	CCAGCCGCGCCCT	.	55	9	95	0	G|1.000;A|0.000	657	A	13259101	G	A	13259101	3	1	126	1	0	0	0	0	1	0	0	0	4550	1086	38	1	3684	1	DLC1	8	13259101	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10		13259101	133104921	31	15552											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53536345	53536345	+	Silent	SNP	T	T	C	rs145350535		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RB1CC1	NM_014781	exon24	c.A4782G	p.V1594V	AAGTTATACTTTC	.	99	19	72	0	T|1.000;C|0.000	170	C	53536345	T	C	53536345	2	2	126	1	0	0	0	0	0	0	0	1	13099	1393	49	2		2	RB1CC1	8	53536345	Silent	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	40277244	53536345	92827677	32	15553											
HEY1	23462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	80679323	80679323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	HEY1	NM_012258	exon3	c.T170G	p.I57S	TTCTCAATTATCT	.	79	16	74	0	.	658	C	80679323	A	C	80679323	3	2	126	1	0	0	0	0	1	0	0	0	7078	101	4	5	768	5	HEY1	8	80679323	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	27142978	80679323	65684699	33	15554											
ADCY8	114	broad.mit.edu;bcgsc.ca	37	8	131848681	131848681	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ADCY8	NM_001115	exon12	c.G2517T	p.T839T	CACCCCCGTGAAG	.	56	25	45	1	.	157	A	131848681	C	A	131848681	2	1	126	1	0	0	0	0	0	0	0	1	300	639	23	1		1	ADCY8	8	131848681	Silent	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	51169358	131848681	14515341	34	15555											
C9orf64	84267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86571248	86571248	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	C9orf64	NM_032307	exon1	c.C168T	p.N56N	CCTGGGGTTCAGC	.	55	8	54	0	.	90	A	86571248	G	A	86571248	2	1	126	1	0	0	0	0	0	0	0	1	2489	1252	44	3		3	C9orf64	9	86571248	Silent	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10		86571248	54642183	35	15556											
SPTAN1	6709	broad.mit.edu;mdanderson.org	37	9	131386761	131386761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPTAN1	NM_001130438	exon46	c.G5987T	p.W1996L	AGTCCTGGATCGG	.	27	7	25	0	.	158	T	131386761	G	T	131386761	3	4	126	1	0	0	0	0	1	0	0	0	15116	1357	47	3	6165	3	SPTAN1	9	131386761	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	44815513	131386761	9826670	36	15557											
SLC2A6	11182	bcgsc.ca;mdanderson.org	37	9	136340664	136340664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SLC2A6	NM_017585	exon5	c.T632C	p.L211P	AAGCTGAGCAGCA	.	13	3	20	0	.	90	G	136340664	A	G	136340664	3	3	126	1	0	0	0	0	1	0	0	0	14549	304	11	2	915	2	SLC2A6	9	136340664	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	4953903	136340664	4872767	37	15558											
RPP30	10556	broad.mit.edu;bcgsc.ca	37	10	92635370	92635370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RPP30	NM_006413	exon3	c.A194G	p.Q65R	TTGTACAGGTAGG	.	109	5	111	0	.	226	G	92635370	A	G	92635370	3	3	126	1	0	0	0	0	1	0	0	0	13612	202	7	2	204	2	RPP30	10	92635370	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10		92635370	42899377	38	15559											
SLIT1	6585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98761962	98761962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SLIT1	NM_003061	exon36	c.C4319T	p.A1440V	CAGTGTGCCCCCT	.	35	9	43	0	.	94	A	98761962	G	A	98761962	3	1	126	1	0	0	0	0	1	0	0	0	14739	1319	46	3	293	3	SLIT1	10	98761962	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	6126592	98761962	36772785	39	15560											
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117075032	117075032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ATRNL1	NM_207303	exon18	c.A2823T	p.Q941H	AGCTCAAAATTGT	.	71	14	63	0	.	96	T	117075032	A	T	117075032	3	4	126	1	0	0	0	0	1	0	0	0	1207	11	1	4	2893	4	ATRNL1	10	117075032	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	18313070	117075032	18459715	40	15561											
METTL10	399818	broad.mit.edu;bcgsc.ca	37	10	126454118	126454118	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	METTL10	NM_212554	exon5	c.A459G	p.K153K	AGTCCCTTTGTCA	.	113	5	102	0	.	22	C	126454118	T	C	126454118	2	2	126	1	0	0	0	0	0	0	0	1	9494	1606	56	2		2	METTL10	10	126454118	Silent	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	9379086	126454118	9080629	41	15562											
MYBPC3	4607	broad.mit.edu;bcgsc.ca	37	11	47368980	47368980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MYBPC3	NM_000256	exon9	c.A902G	p.K301R	CACCTCTTTTTCA	.	51	4	57	0	.	92	C	47368980	T	C	47368980	3	2	126	1	0	0	0	0	1	0	0	0	10013	1609	56	2	3019	2	MYBPC3	11	47368980	Missense_Mutation	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10		47368980	87637536	42	15563											
BSCL2	26580	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62458597	62458597	+	Missense_Mutation	SNP	C	C	T	rs144725547		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BSCL2	NM_001122955	exon8	c.G1022A	p.R341K	TTGTCTCTTTTTC	.	76	16	100	0	C|1.000;T|0.000	514	T	62458597	C	T	62458597	3	4	126	1	0	0	0	0	1	0	0	0	1527	913	32	3	382	3	BSCL2	11	62458597	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	15089617	62458597	72547919	43	15564											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64522286	64522286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PYGM	NM_005609	exon8	c.G878A	p.R293Q	TTCAGCCGCAGCT	.	29	8	38	0	.	92	T	64522286	C	T	64522286	3	4	126	1	0	0	0	0	1	0	0	0	12862	652	23	1	1702	1	PYGM	11	64522286	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	2063689	64522286	70484230	44	15565											
BATF2	116071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64757247	64757247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BATF2	NM_138456	exon3	c.G179T	p.R60L	TCCTTCCGCAGGG	.	59	10	61	0	.	91	A	64757247	C	A	64757247	3	1	126	1	0	0	0	0	1	0	0	0	1326	652	23	1	649	1	BATF2	11	64757247	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	234961	64757247	70249269	45	15566											
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119044251	119044251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NLRX1	NM_024618	exon5	c.G293A	p.R98H	AGGAGCGCCAGTT	.	40	9	41	0	.	92	A	119044251	G	A	119044251	3	1	126	1	0	0	0	0	1	0	0	0	10485	1087	38	1	307	1	NLRX1	11	119044251	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	54287004	119044251	15962265	46	15567											
FAM90A1	55138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8375287	8375287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FAM90A1	NM_018088	exon7	c.A526G	p.R176G	AGCCCCTGTCAGA	.	36	5	23	0	.	91	C	8375287	T	C	8375287	3	2	126	1	0	0	0	0	1	0	0	0	5650	1579	55	2	872	2	FAM90A1	12	8375287	Missense_Mutation	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10		8375287	125476608	47	15568											
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63195713	63195713	+	Silent	SNP	G	G	A	rs201542231		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PPM1H	NM_020700	exon3	c.C639T	p.R213R	CCCTCCGCGCAGG	.	14	7	21	0	G|0.999;A|0.000	637	A	63195713	G	A	63195713	2	1	126	1	0	0	0	0	0	0	0	1	12341	1074	38	1		1	PPM1H	12	63195713	Silent	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	54820426	63195713	70656182	48	15569											
SDS	10993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	113834987	113834988	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SDS	NM_006843	exon6	c.636_637insA	p.S212fs	GGGCAGGGAGACA	.	69	12	84	0	.	91	T	113834988	-	T	113834987	7	5	126	1	0	1	1	0	0	0	0	0	13975	1219	43	0	362	0	SDS	12	113834987	Frame_Shift_Ins	INS	-	TCGA-EP-A3RK-01A-11D-A22F-10	50639274	113834987	20016908	49	15570											
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24798144	24798144	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPATA13	NM_001166271	exon2	c.C1077T	p.D359D	GCATGACGACTAC	.	34	11	29	0	.	229	T	24798144	C	T	24798144	2	4	126	1	0	0	0	0	0	0	0	1	14999	535	19	1		1	SPATA13	13	24798144	Silent	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		24798144	90371734	50	15571											
N4BP2L2	10443	broad.mit.edu;bcgsc.ca	37	13	33110778	33110778	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	N4BP2L2	NM_014887	exon2	c.A387G	p.K129K	AGGGGGTTTGTAA	.	110	5	139	0	.	68	C	33110778	T	C	33110778	2	2	126	1	0	0	0	0	0	0	0	1	10112	1722	60	2		2	N4BP2L2	13	33110778	Silent	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	8312634	33110778	82059100	51	15572											
EPSTI1	94240	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43566129	43566129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	EPSTI1	NM_001002264	exon1	c.A173G	p.H58R	CCCGCGTGCACGA	.	41	4	53	1	.	91	C	43566129	T	C	43566129	3	2	126	1	0	0	0	0	1	0	0	0	5198	1696	59	2	1111	2	EPSTI1	13	43566129	Missense_Mutation	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	10455351	43566129	71603749	52	15573											
NFATC4	4776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24843036	24843036	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NFATC4	NM_001198967	exon6	c.C1884A	p.V628V	GAAGGTCGTCTCA	.	59	12	70	1	.	92	A	24843036	C	A	24843036	2	1	126	1	0	0	0	0	0	0	0	1	10365	871	31	1		1	NFATC4	14	24843036	Silent	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		24843036	82506504	53	15574											
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89844660	89844660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FANCI	NM_001113378	exon27	c.C2993T	p.P998L	TGGAGCCCTCCTC	.	94	27	88	0	.	92	T	89844660	C	T	89844660	3	4	126	1	0	0	0	0	1	0	0	0	5669	623	22	3	3095	3	FANCI	15	89844660	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		89844660	12686732	54	15575											
ZNF629	23361	ucsc.edu;bcgsc.ca	37	16	30793870	30793870	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001080417	exon3	c.A1779G	p.G593G	GTTTTCTCCGATG	.	42	4	60	0	.	.	C	30793870	T	C	30793870	2	2	126	1	0	0	0	0	0	0	0	1	18050	1538	54	2		2	ZNF629	16	30793870	Silent	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10		30793870	59560883	55	15576											
MMP2	4313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55517934	55517934	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MMP2	NM_004530	exon3	c.T387A	p.I129I	GATCATTGGCTAC	.	80	21	72	0	.	1149	A	55517934	T	A	55517934	2	1	126	1	0	0	0	0	0	0	0	1	9658	1800	63	4		4	MMP2	16	55517934	Silent	SNP	T	TCGA-EP-A3RK-01A-11D-A22F-10	24724064	55517934	34836819	56	15577											
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4098292	4098292	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ANKFY1	NM_001257999	exon10	c.C1479T	p.D493D	AGGTGCGTCTGTG	.	60	11	51	0	.	93	A	4098292	G	A	4098292	2	1	126	1	0	0	0	0	0	0	0	1	626	1136	40	1		1	ANKFY1	17	4098292	Silent	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10		4098292	77096918	57	15578											
CHRNE	1145	broad.mit.edu;mdanderson.org	37	17	4802334	4802334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CHRNE	NM_000080	exon11	c.G1288T	p.V430L	CGGCCACGAAGTT	.	26	4	19	0	.	90	A	4802334	C	A	4802334	3	1	126	1	0	0	0	0	1	0	0	0	3395	536	19	1	201	1	CHRNE	17	4802334	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	704042	4802334	76392876	58	15579											
KIF1C	10749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4923807	4923807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	KIF1C	NM_006612	exon20	c.A1771G	p.K591E	ATGGGCAAGAACC	.	61	10	50	0	.	92	G	4923807	A	G	4923807	3	3	126	1	0	0	0	0	1	0	0	0	8285	131	5	2	1841	2	KIF1C	17	4923807	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	121473	4923807	76271403	59	15580											
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56247067	56247067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ALPK2	NM_052947	exon4	c.T941C	p.I314T	AGGGTTATCTCTG	.	171	28	139	0	.	765	G	56247067	A	G	56247067	3	3	126	1	0	0	0	0	1	0	0	0	545	449	16	2	5611	2	ALPK2	18	56247067	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10		56247067	21830181	60	15581											
ALKBH7	84266	ucsc.edu;bcgsc.ca	37	19	6374235	6374235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ALKBH7	NM_032306	exon2	c.A226G	p.T76A	CGAGAGACAGAGA	.	22	4	22	0	.	90	G	6374235	A	G	6374235	3	3	126	1	0	0	0	0	1	0	0	0	532	275	10	2	232	2	ALKBH7	19	6374235	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10		6374235	52754748	61	15582											
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19745495	19745495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GMIP	NM_016573	exon18	c.C1905G	p.I635M	GAAGGGGATCACG	.	79	8	81	0	.	91	C	19745495	G	C	19745495	3	2	126	1	0	0	0	0	1	0	0	0	6491	1164	41	4	1023	4	GMIP	19	19745495	Missense_Mutation	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	13371260	19745495	39383488	62	15583											
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46890688	46890688	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PPP5C	NM_006247	exon9	c.G1113A	p.R371R	TGAGCGGAATCGA	.	47	13	44	0	.	227	A	46890688	G	A	46890688	2	1	126	1	0	0	0	0	0	0	0	1	12406	1161	41	3		3	PPP5C	19	46890688	Silent	SNP	G	TCGA-EP-A3RK-01A-11D-A22F-10	27145193	46890688	12238295	63	15584											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53669326	53669326	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ZNF665	NM_024733	exon4	c.T417C	p.N139N	AAGCTGATTTTCA	.	162	42	138	0	.	70	G	53669326	A	G	53669326	2	3	126	1	0	0	0	0	0	0	0	1	18070	330	12	2		2	ZNF665	19	53669326	Silent	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	6778638	53669326	5459657	64	15585											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53747007	53747007	+	Silent	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ZNF677	NM_182609	exon4	c.T159A	p.P53P	TTCTGGAGGGATG	.	82	21	71	0	.	91	T	53747007	A	T	53747007	2	4	126	1	0	0	0	0	0	0	0	1	18081	291	11	4		4	ZNF677	19	53747007	Silent	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	77681	53747007	5381976	65	15586											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40944364	40944364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PTPRT	NM_007050	exon12	c.G2138A	p.G713E	CTTACTCCATTGG	.	86	13	110	0	.	664	T	40944364	C	T	40944364	3	4	126	1	0	0	0	0	1	0	0	0	12812	869	30	3	2328	3	PTPRT	20	40944364	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		40944364	22081156	66	15587											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47307560	47307560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PREX1	NM_020820	exon9	c.G1111T	p.V371F	TGCAGACAAACCA	.	132	30	131	0	.	231	A	47307560	C	A	47307560	3	1	126	1	0	0	0	0	1	0	0	0	12476	478	17	3	3996	3	PREX1	20	47307560	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	6363196	47307560	15717960	67	15588											
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	23656199	23656199	+	Missense_Mutation	SNP	C	C	G	rs200185744	alternate_allele	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BCR	NM_004327	exon21	c.C3502G	p.L1168V	AACCTGCTGCTGT	.	25	7	36	0	C|0.999;T|0.000	1349	G	23656199	C	G	23656199	3	3	126	1	0	0	0	0	1	0	0	0	1388	796	28	4	3584	4	BCR	22	23656199	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10		23656199	27648367	68	15589											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37098516	37098516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CACNG2	NM_006078	exon1	c.T106A	p.S36T	CTCTGGAGTAGAG	.	162	32	174	0	.	90	T	37098516	A	T	37098516	3	4	126	1	0	0	0	0	1	0	0	0	2557	304	11	4	881	4	CACNG2	22	37098516	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	13442317	37098516	14206050	69	15590											
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37524431	37524431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	IL2RB	NM_000878	exon10	c.G1361A	p.R454K	GGCATCCTCTCTT	.	32	8	25	0	.	90	T	37524431	C	T	37524431	3	4	126	1	0	0	0	0	1	0	0	0	7687	681	24	3	298	3	IL2RB	22	37524431	Missense_Mutation	SNP	C	TCGA-EP-A3RK-01A-11D-A22F-10	425915	37524431	13780135	70	15591											
NAGA	4668	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42456385	42456385	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NAGA	NM_000262	exon9	c.T1134A	p.S378R	GAGGCCACTGATG	.	32	5	45	0	.	90	T	42456385	A	T	42456385	3	4	126	1	0	0	0	0	1	0	0	0	10141	156	6	4	105	4	NAGA	22	42456385	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10	4931954	42456385	8848181	71	15592											
NUDT11	55190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51238814	51238814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NUDT11	NM_018159	exon1	c.T483G	p.D161E	ATCGCTATCTGGC	.	234	134	173	1	.	130	C	51238814	A	C	51238814	3	2	126	1	0	0	0	0	1	0	0	0	10727	446	16	5	19	5	NUDT11	23	51238814	Missense_Mutation	SNP	A	TCGA-EP-A3RK-01A-11D-A22F-10		51238814	104031746	72	15593											
SPEN	23013	hgsc.bcm.edu;bcgsc.ca	37	1	16261624	16261624	+	Silent	SNP	C	C	A	rs151181793	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPEN	NM_015001	exon11	c.C8889A	p.P2963P	TGACCCCGTCACC	.	80	4	196	0	C|0.998;T|0.002	298	A	16261624	C	A	16261624	2	1	127	1	0	0	0	0	0	0	0	1	15037	639	23	1		1	SPEN	1	16261624	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10		16261624	232988997	1	15594											
GPATCH3	63906	hgsc.bcm.edu;bcgsc.ca	37	1	27226824	27226824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPATCH3	NM_022078	exon1	c.G110T	p.R37L	TCTTCTCGGAACT	.	46	4	129	0	.	90	A	27226824	C	A	27226824	3	1	127	1	0	0	0	0	1	0	0	0	6592	884	31	1	1495	1	GPATCH3	1	27226824	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	10965200	27226824	222023797	2	15595											
GNL2	29889	hgsc.bcm.edu;bcgsc.ca	37	1	38048471	38048471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNL2	NM_013285	exon7	c.C703A	p.P235T	TGTGAGGGGAACG	.	85	5	122	0	.	91	T	38048471	G	T	38048471	3	4	127	1	0	0	0	0	1	0	0	0	6536	1232	43	3	1532	3	GNL2	1	38048471	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	10821647	38048471	211202150	3	15596											
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39816575	39816575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MACF1	NM_012090	exon39	c.G4898T	p.R1633L	CTCTTCGGGAAAA	.	51	5	90	0	.	165	T	39816575	G	T	39816575	3	4	127	1	0	0	0	0	1	0	0	0	9144	1116	39	1	11199	1	MACF1	1	39816575	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1768104	39816575	209434046	4	15597											
PPIE	10450	hgsc.bcm.edu;bcgsc.ca	37	1	40218983	40218983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPIE	NM_006112	exon10	c.C862T	p.P288S	GGGAAGCCAAAGC	.	43	4	128	0	.	90	T	40218983	C	T	40218983	3	4	127	1	0	0	0	0	1	0	0	0	12322	739	26	3	900	3	PPIE	1	40218983	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	402408	40218983	209031638	5	15598											
SMAP2	64744	hgsc.bcm.edu;bcgsc.ca	37	1	40881972	40881972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMAP2	NM_022733	exon8	c.T806C	p.L269P	CCATTCTTTCACT	.	65	4	106	0	.	68	C	40881972	T	C	40881972	3	2	127	1	0	0	0	0	1	0	0	0	14767	1609	56	2	836	2	SMAP2	1	40881972	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	662989	40881972	208368649	6	15599											
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43664184	43664184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR65	NM_001195831	exon8	c.A1295G	p.E432G	AAGAAGAGGCATA	.	73	4	93	0	.	91	G	43664184	A	G	43664184	3	3	127	1	0	0	0	0	1	0	0	0	17313	304	11	2	1321	2	WDR65	1	43664184	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2782212	43664184	205586437	7	15600											
ARTN	9048	hgsc.bcm.edu;bcgsc.ca	37	1	44401362	44401362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARTN	NM_001136215	exon2	c.T34C	p.S12P	ACGCTGTCCCACT	.	103	5	192	0	.	90	C	44401362	T	C	44401362	3	2	127	1	0	0	0	0	1	0	0	0	1001	1667	58	2	36	2	ARTN	1	44401362	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	737178	44401362	204849259	8	15601											
SLC6A9	6536	hgsc.bcm.edu;bcgsc.ca	37	1	44468248	44468248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC6A9	NM_201649	exon7	c.A1013G	p.E338G	GCTCCCTCCAGGG	.	73	4	140	0	.	90	C	44468248	T	C	44468248	3	2	127	1	0	0	0	0	1	0	0	0	14691	1551	54	2	1139	2	SLC6A9	1	44468248	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	66886	44468248	204782373	9	15602											
CDCP2	200008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54618517	54618517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDCP2	NM_201546	exon1	c.G79A	p.G27S	GCCTACCTTCCAT	.	125	26	216	0	.	69	T	54618517	C	T	54618517	3	4	127	1	0	0	0	0	1	0	0	0	3094	695	24	3	1286	3	CDCP2	1	54618517	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	10150269	54618517	194632104	10	15603											
USP24	23358	hgsc.bcm.edu;bcgsc.ca	37	1	55537593	55537593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP24	NM_015306	exon67	c.C7694A	p.T2565K	GCTAACGTGTCCT	.	66	4	137	0	.	521	T	55537593	G	T	55537593	3	4	127	1	0	0	0	0	1	0	0	0	17052	1145	40	1	176	1	USP24	1	55537593	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	919076	55537593	193713028	11	15604											
FGGY	55277	hgsc.bcm.edu;bcgsc.ca	37	1	60019838	60019838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FGGY	NM_001113411	exon8	c.A842G	p.E281G	TCTGTGAGGGGCA	.	93	5	153	0	.	69	G	60019838	A	G	60019838	3	3	127	1	0	0	0	0	1	0	0	0	5871	304	11	2	868	2	FGGY	1	60019838	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	4482245	60019838	189230783	12	15605											
INADL	10207	hgsc.bcm.edu;bcgsc.ca	37	1	62582321	62582321	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INADL	NM_176877	exon36	c.C4773A	p.A1591A	AAATGCCTCACAG	.	51	4	95	0	.	94	A	62582321	C	A	62582321	2	1	127	1	0	0	0	0	0	0	0	1	7731	668	24	3		3	INADL	1	62582321	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	2562483	62582321	186668300	13	15606											
DNAJC6	9829	hgsc.bcm.edu;bcgsc.ca	37	1	65867511	65867511	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNAJC6	NM_001256864	exon15	c.C2175A	p.T725T	TCCCACCCATCAA	.	73	4	110	0	.	272	A	65867511	C	A	65867511	2	1	127	1	0	0	0	0	0	0	0	1	4653	610	22	3		3	DNAJC6	1	65867511	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	3285190	65867511	183383110	14	15607											
EPHX4	253152	hgsc.bcm.edu;bcgsc.ca	37	1	92528734	92528734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHX4	NM_173567	exon7	c.G980T	p.R327M	ATTTCAGGCTAAC	.	80	4	93	0	.	90	T	92528734	G	T	92528734	3	4	127	1	0	0	0	0	1	0	0	0	5182	1000	35	3	1006	3	EPHX4	1	92528734	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	26661223	92528734	156721887	15	15608											
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109715162	109715162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1324	NM_020775	exon5	c.C668A	p.T223N	TGAAGACCACAGA	.	153	63	236	0	.	157	A	109715162	C	A	109715162	3	1	127	1	0	0	0	0	1	0	0	0	8223	507	18	3	686	3	KIAA1324	1	109715162	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	17186428	109715162	139535459	16	15609											
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110294654	110294654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPS8L3	NM_139053	exon15	c.C1400T	p.P467L	TCCCGTGGGTTCC	.	186	75	236	0	.	93	A	110294654	G	A	110294654	3	1	127	1	0	0	0	0	1	0	0	0	5197	1348	47	3	404	3	EPS8L3	1	110294654	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	579492	110294654	138955967	17	15610											
TTF2	8458	hgsc.bcm.edu;bcgsc.ca	37	1	117641477	117641477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTF2	NM_003594	exon22	c.G3292T	p.A1098S	GATCAAGCTTGTG	.	81	4	124	0	.	91	T	117641477	G	T	117641477	3	4	127	1	0	0	0	0	1	0	0	0	16716	971	34	3	3378	3	TTF2	1	117641477	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	7346823	117641477	131609144	18	15611											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152191383	152191383	+	Nonsense_Mutation	SNP	G	G	A	rs148651006	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HRNR	NM_001009931	exon3	c.C2722T	p.R908X	CATGTCGGCCATA	.	126	48	166	0	A|0.000;G|0.999;T|0.000	93	A	152191383	G	A	152191383	4	1	127	1	0	0	0	0	0	1	0	0	7359	1124	39	1	5834	1	HRNR	1	152191383	Nonsense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	34549906	152191383	97059238	19	15612											
TRIM46	80128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155154372	155154372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM46	NM_025058	exon9	c.C1633T	p.R545W	CGAGAGCGGCTGG	.	127	20	162	1	.	228	T	155154372	C	T	155154372	3	4	127	1	0	0	0	0	1	0	0	0	16518	759	27	1	1667	1	TRIM46	1	155154372	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	2962989	155154372	94096249	20	15613											
ARHGEF2	9181	hgsc.bcm.edu;bcgsc.ca	37	1	155927648	155927648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGEF2	NM_001162383	exon13	c.A1571G	p.Q524R	AGATTCTGCAGCG	.	101	5	131	0	.	228	C	155927648	T	C	155927648	3	2	127	1	0	0	0	0	1	0	0	0	903	1580	55	2	1429	2	ARHGEF2	1	155927648	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	773276	155927648	93322973	21	15614											
TIPRL	261726	hgsc.bcm.edu;bcgsc.ca	37	1	168169255	168169255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIPRL	NM_152902	exon7	c.G790T	p.D264Y	CCAGCAGACTCAC	.	91	4	101	0	.	91	T	168169255	G	T	168169255	3	4	127	1	0	0	0	0	1	0	0	0	15923	942	33	3	841	3	TIPRL	1	168169255	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	12241607	168169255	81081366	22	15615											
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169512354	169512354	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	F5	NM_000130	exon14	c.1976-2A>G	.	AGTTCCTACAGAA	.	73	23	103	0	.	157	C	169512354	T	C	169512354	5	2	127	1	0	0	0	0	0	0	1	0	5348	1536	53	2	4752	2	F5	1	169512354	Splice_Site	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1343099	169512354	79738267	23	15616											
ZNF648	127665	hgsc.bcm.edu;bcgsc.ca	37	1	182026597	182026597	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF648	NM_001009992	exon2	c.C549A	p.S183S	CCCTGCGGACGTG	.	96	6	152	0	.	91	T	182026597	G	T	182026597	2	4	127	1	0	0	0	0	0	0	0	1	18060	1103	39	1		1	ZNF648	1	182026597	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	12514243	182026597	67224024	24	15617											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201186487	201186487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGFN1	NM_001164586	exon17	c.C9668T	p.A3223V	GGACAGCACCTCG	.	182	23	235	0	.	71	T	201186487	C	T	201186487	3	4	127	1	0	0	0	0	1	0	0	0	7590	710	25	3	9730	3	IGFN1	1	201186487	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	19159890	201186487	48064134	25	15618											
CHIT1	1118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203186123	203186123	+	Missense_Mutation	SNP	C	C	T	rs202003206		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHIT1	NM_003465	exon11	c.G1295A	p.R432Q	CGTTCCCGAGGAT	.	28	9	42	0	C|0.999;T|0.000	90	T	203186123	C	T	203186123	3	4	127	1	0	0	0	0	1	0	0	0	3346	652	23	1	109	1	CHIT1	1	203186123	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1999636	203186123	46064498	26	15619											
SOX13	9580	hgsc.bcm.edu;bcgsc.ca	37	1	204083543	204083543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SOX13	NM_005686	exon3	c.A314G	p.N105S	ACTTCAACCGAAA	.	92	4	166	0	.	514	G	204083543	A	G	204083543	3	3	127	1	0	0	0	0	1	0	0	0	14944	43	2	2	320	2	SOX13	1	204083543	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	897420	204083543	45167078	27	15620											
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212139822	212139822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS7	NM_015434	exon16	c.A2133T	p.L711F	TATCAGTAAACAG	.	90	39	111	0	.	90	A	212139822	T	A	212139822	3	1	127	1	0	0	0	0	1	0	0	0	7783	1635	57	4	775	4	INTS7	1	212139822	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	8056279	212139822	37110799	28	15621											
USH2A	7399	hgsc.bcm.edu;bcgsc.ca	37	1	215963585	215963585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USH2A	NM_206933	exon51	c.A9998G	p.D3333G	ATGGTATCTGACA	.	122	5	156	0	.	115	C	215963585	T	C	215963585	3	2	127	1	0	0	0	0	1	0	0	0	17033	1435	50	2	5698	2	USH2A	1	215963585	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	3823763	215963585	33287036	29	15622											
TLR5	7100	hgsc.bcm.edu;bcgsc.ca	37	1	223286221	223286221	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR5	NM_003268	exon6	c.C153A	p.L51L	CAGCAGGAGCCTC	.	123	5	122	0	.	525	T	223286221	G	T	223286221	2	4	127	1	0	0	0	0	0	0	0	1	15951	1161	41	3		3	TLR5	1	223286221	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	7322636	223286221	25964400	30	15623											
EDARADD	128178	hgsc.bcm.edu;bcgsc.ca	37	1	236645629	236645629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EDARADD	NM_145861	exon6	c.C328T	p.P110S	CGGGCCCCCACCA	.	73	4	143	0	.	90	T	236645629	C	T	236645629	3	4	127	1	0	0	0	0	1	0	0	0	4906	623	22	3	385	3	EDARADD	1	236645629	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	13359408	236645629	12604992	31	15624											
RYR2	6262	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	237947885	237947885	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR2	NM_001035	exon90	c.C12873T	p.F4291F	TATTTTCATGACC	.	42	4	69	0	.	158	T	237947885	C	T	237947885	2	4	127	1	0	0	0	0	0	0	0	1	13769	825	29	3		3	RYR2	1	237947885	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1302256	237947885	11302736	32	15625											
FMN2	56776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240370660	240370660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FMN2	NM_020066	exon5	c.A2548G	p.K850E	GCCTTTAAAAACA	.	116	54	147	0	.	145	G	240370660	A	G	240370660	3	3	127	1	0	0	0	0	1	0	0	0	5950	363	13	2	2566	2	FMN2	1	240370660	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2422775	240370660	8879961	33	15626											
KMO	8564	hgsc.bcm.edu;bcgsc.ca	37	1	241718930	241718930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KMO	NM_003679	exon5	c.A331G	p.R111G	GTAAGCAGAGAAA	.	84	4	94	0	.	92	G	241718930	A	G	241718930	3	3	127	1	0	0	0	0	1	0	0	0	8424	180	7	2	349	2	KMO	1	241718930	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	1348270	241718930	7531691	34	15627											
WDR64	128025	hgsc.bcm.edu;bcgsc.ca	37	1	241886642	241886642	+	Silent	SNP	C	C	A	rs145843472	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR64	NM_144625	exon9	c.C1068A	p.T356T	CAGCACCAAGCCA	.	76	4	110	0	C|1.000;T|0.000	91	A	241886642	C	A	241886642	2	1	127	1	0	0	0	0	0	0	0	1	17312	581	21	3		3	WDR64	1	241886642	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	167712	241886642	7363979	35	15628											
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27258486	27258486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM214	NM_017727	exon4	c.G527A	p.R176Q	TGAGCCGGGAGCT	.	59	15	88	0	.	115	A	27258486	G	A	27258486	3	1	127	1	0	0	0	0	1	0	0	0	16134	1116	39	1	541	1	TMEM214	2	27258486	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10		27258486	215940887	36	15629											
ARHGAP25	9938	hgsc.bcm.edu;bcgsc.ca	37	2	69043419	69043419	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP25	NM_001166277	exon6	c.688-2A>G	.	CTTCCCAGGCTCA	.	78	4	88	0	.	274	G	69043419	A	G	69043419	5	3	127	1	0	0	0	0	0	0	1	0	874	202	7	2	872	2	ARHGAP25	2	69043419	Splice_Site	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	41784933	69043419	174155954	37	15630											
DCTN1	1639	hgsc.bcm.edu;bcgsc.ca	37	2	74590545	74590545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCTN1	NM_004082	exon28	c.C3221T	p.P1074L	TGCCCAGGGATGG	.	50	4	64	0	.	95	A	74590545	G	A	74590545	3	1	127	1	0	0	0	0	1	0	0	0	4306	1000	35	3	635	3	DCTN1	2	74590545	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	5547126	74590545	168608828	38	15631											
RPIA	22934	hgsc.bcm.edu;bcgsc.ca	37	2	89036184	89036184	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPIA	NM_144563	exon7	c.C729T	p.V243V	GGCTGTCAACAAG	.	70	4	94	0	.	91	T	89036184	C	T	89036184	2	4	127	1	0	0	0	0	0	0	0	1	13553	813	29	3		3	RPIA	2	89036184	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	14445639	89036184	154163189	39	15632											
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128628438	128628438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMMECR1L	NM_031445	exon5	c.G583A	p.V195I	GGGAGACAGAGCA	.	125	70	157	0	.	90	T	128628438	C	T	128628438	3	4	127	1	0	0	0	0	1	0	0	0	579	478	17	3	365	3	AMMECR1L	2	128628438	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	39592254	128628438	114570935	40	15633											
PDK1	5163	hgsc.bcm.edu;bcgsc.ca	37	2	173423557	173423557	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDK1	NM_002610	exon2	c.C318T	p.S106S	ACCATCCGTTCAA	.	99	5	138	0	.	978	T	173423557	C	T	173423557	2	4	127	1	0	0	0	0	0	0	0	1	11675	639	23	1		1	PDK1	2	173423557	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	44795119	173423557	69775816	41	15634											
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179413062	179413062	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTN	NM_001267550	exon339	c.T93291C	p.G31097G	ACCAACACCATAC	.	56	4	86	0	.	636	G	179413062	A	G	179413062	2	3	127	1	0	0	0	0	0	0	0	1	16732	146	6	2		2	TTN	2	179413062	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	5989505	179413062	63786311	42	15635											
ANKRD44	91526	hgsc.bcm.edu;bcgsc.ca	37	2	197954757	197954757	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ANKRD44	NM_001195144	exon12	c.1101-1G>T	.	CCACACCTGAGGA	.	105	5	95	0	.	230	A	197954757	C	A	197954757	5	1	127	1	0	0	0	0	0	0	1	0	672	695	24	3	1798	3	ANKRD44	2	197954757	Splice_Site	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	18541695	197954757	45244616	43	15636											
KLHL30	377007	hgsc.bcm.edu;bcgsc.ca	37	2	239056574	239056574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL30	NM_198582	exon6	c.C1250T	p.A417V	TCTCGGCTGCCGG	.	76	4	95	0	.	22	T	239056574	C	T	239056574	3	4	127	1	0	0	0	0	1	0	0	0	8384	797	28	3	1268	3	KLHL30	2	239056574	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	41101817	239056574	4142799	44	15637											
HDLBP	3069	hgsc.bcm.edu;bcgsc.ca	37	2	242186199	242186199	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDLBP	NM_005336	exon16	c.C1918A	p.R640R	TGCTCCGGGCAGC	.	122	5	121	0	.	290	T	242186199	G	T	242186199	2	4	127	1	0	0	0	0	0	0	0	1	7025	1115	39	1		1	HDLBP	2	242186199	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	3129625	242186199	1013174	45	15638											
LRRN1	57633	hgsc.bcm.edu;bcgsc.ca	37	3	3887042	3887042	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRN1	NM_020873	exon2	c.T717C	p.D239D	TCTGGATAGCCTT	.	66	4	79	0	.	90	C	3887042	T	C	3887042	2	2	127	1	0	0	0	0	0	0	0	1	9034	1403	49	2		2	LRRN1	3	3887042	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		3887042	194135388	46	15639											
CLASP2	23122	hgsc.bcm.edu;bcgsc.ca	37	3	33759302	33759302	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLASP2	NM_015097	exon1	c.C193A	p.R65R	TTACCCGGTAGTT	.	86	5	113	0	.	93	T	33759302	G	T	33759302	2	4	127	1	0	0	0	0	0	0	0	1	3455	1115	39	1		1	CLASP2	3	33759302	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	29872260	33759302	164263128	47	15640											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38080908	38080908	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DLEC1	NM_007337	exon1	c.C192T	p.R64R	GCCCCGCCGCCTC	.	138	46	176	0	.	161	T	38080908	C	T	38080908	2	4	127	1	0	0	0	0	0	0	0	1	4552	726	26	3		3	DLEC1	3	38080908	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	4321606	38080908	159941522	48	15641											
XYLB	9942	hgsc.bcm.edu;bcgsc.ca	37	3	38416703	38416703	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	XYLB	NM_005108	exon12	c.C957T	p.H319H	AGGCCACATCTTC	.	88	4	134	0	.	91	T	38416703	C	T	38416703	2	4	127	1	0	0	0	0	0	0	0	1	17459	477	17	3		3	XYLB	3	38416703	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	335795	38416703	159605727	49	15642											
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48609831	48609831	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL7A1	NM_000094	exon89	c.A6960G	p.G2320G	CAGGTCTCCAGCA	.	153	7	184	0	.	160	C	48609831	T	C	48609831	2	2	127	1	0	0	0	0	0	0	0	1	3704	1538	54	2		2	COL7A1	3	48609831	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	10193128	48609831	149412599	50	15643											
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49940121	49940121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MST1R	NM_001244937	exon1	c.C922T	p.R308C	CCCGGCGCCTGCG	.	55	24	72	0	.	1406	A	49940121	G	A	49940121	3	1	127	1	0	0	0	0	1	0	0	0	9891	1087	38	1	3360	1	MST1R	3	49940121	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1330290	49940121	148082309	51	15644											
FOXP1	27086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	71096149	71096149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXP1	NM_001244815	exon5	c.G614A	p.G205D	AGAAGGCCTTGGC	.	158	19	235	2	.	415	T	71096149	C	T	71096149	3	4	127	1	0	0	0	0	1	0	0	0	6026	739	26	3	1473	3	FOXP1	3	71096149	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	21156028	71096149	126926281	52	15645											
EPHA3	2042	hgsc.bcm.edu;bcgsc.ca	37	3	89390186	89390186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHA3	NM_005233	exon4	c.G935T	p.R312L	ACTTCCGGGCAGA	.	94	4	74	0	.	1500	T	89390186	G	T	89390186	3	4	127	1	0	0	0	0	1	0	0	0	5168	1116	39	1	949	1	EPHA3	3	89390186	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	18294037	89390186	108632244	53	15646											
TBC1D23	55773	hgsc.bcm.edu;bcgsc.ca	37	3	100002653	100002653	+	Silent	SNP	C	C	T	rs200870879	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D23	NM_001199198	exon4	c.C474T	p.P158P	CATTCCCAGGTAA	.	83	4	108	0	C|0.999;G|0.000	92	T	100002653	C	T	100002653	2	4	127	1	0	0	0	0	0	0	0	1	15610	581	21	3		3	TBC1D23	3	100002653	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	10612467	100002653	98019777	54	15647											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	124385357	124385357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KALRN	NM_001024660	exon46	c.A6404G	p.D2135G	AGCTGGATGCAGG	.	95	5	121	0	.	738	G	124385357	A	G	124385357	3	3	127	1	0	0	0	0	1	0	0	0	7975	333	12	2	6742	2	KALRN	3	124385357	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	24382704	124385357	73637073	55	15648											
MCM2	4171	hgsc.bcm.edu;bcgsc.ca	37	3	127325501	127325501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM2	NM_004526	exon6	c.C942A	p.S314R	GACCAGCTGCACT	.	57	4	84	0	.	230	A	127325501	C	A	127325501	3	1	127	1	0	0	0	0	1	0	0	0	9386	796	28	3	964	3	MCM2	3	127325501	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	2940144	127325501	70696929	56	15649											
GK5	256356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141884509	141884509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GK5	NM_001039547	exon16	c.G1545T	p.W515C	TTTGGCCCAGTTT	.	514	246	651	1	.	90	A	141884509	C	A	141884509	3	1	127	1	0	0	0	0	1	0	0	0	6422	624	22	3	48	3	GK5	3	141884509	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	14559008	141884509	56137921	57	15650											
OTOL1	131149	hgsc.bcm.edu;bcgsc.ca	37	3	161221321	161221321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080440	exon4	c.G1025T	p.R342L	TGCCCCGGTCGGC	.	106	5	164	0	.	.	T	161221321	G	T	161221321	3	4	127	1	0	0	0	0	1	0	0	0	11304	1116	39	1	1039	1	OTOL1	3	161221321	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	19336812	161221321	36801109	58	15651											
SERPINI2	5276	ucsc.edu;bcgsc.ca	37	3	167164212	167164212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SERPINI2	NM_001012303	exon9	c.C1139A	p.P380Q	AGAAATGGATGAT	.	42	4	76	0	.	228	T	167164212	G	T	167164212	3	4	127	1	0	0	0	0	1	0	0	0	14119	1348	47	3	116	3	SERPINI2	3	167164212	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	5942891	167164212	30858218	59	15652											
FBXO45	200933	hgsc.bcm.edu;bcgsc.ca	37	3	196304623	196304623	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO45	NM_001105573	exon2	c.A618T	p.L206L	TCTACTACATAAT	.	49	4	94	0	.	614	T	196304623	A	T	196304623	2	4	127	1	0	0	0	0	0	0	0	1	5754	378	14	4		4	FBXO45	3	196304623	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	29140411	196304623	1717807	60	15653											
UGDH	7358	hgsc.bcm.edu;bcgsc.ca	37	4	39511398	39511398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UGDH	NM_003359	exon6	c.T793C	p.F265L	TTAGAAACTTGTT	.	77	4	90	0	.	156	G	39511398	A	G	39511398	3	3	127	1	0	0	0	0	1	0	0	0	16937	43	2	2	719	2	UGDH	4	39511398	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10		39511398	151642878	61	15654											
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39850470	39850470	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001100399	exon29	c.3339+1G>A	.	AAATTACCTTTTC	.	65	4	80	0	.	.	T	39850470	C	T	39850470	5	4	127	1	0	0	0	0	0	0	1	0	11691	521	18	3	697	3	PDS5A	4	39850470	Splice_Site	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	339072	39850470	151303806	62	15655											
NSUN7	79730	hgsc.bcm.edu;bcgsc.ca	37	4	40800850	40800850	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NSUN7	NM_024677	exon10	c.A1329G	p.P443P	TTTTCCAGAAGAA	.	94	4	109	0	.	90	G	40800850	A	G	40800850	2	3	127	1	0	0	0	0	0	0	0	1	10683	175	7	2		2	NSUN7	4	40800850	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	950380	40800850	150353426	63	15656											
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52890227	52890227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGCB	NM_000232	exon6	c.T853C	p.Y285H	GCTTGTAGCGTAC	.	133	17	183	0	.	90	G	52890227	A	G	52890227	3	3	127	1	0	0	0	0	1	0	0	0	14200	420	15	2	107	2	SGCB	4	52890227	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	12089377	52890227	138264049	64	15657											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74275125	74275126	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.536_537insC	p.L179fs	AACTCCTTTTCTT	.	297	155	388	0	.	96	C	74275126	-	C	74275125	7	5	127	1	0	1	1	0	0	0	0	0	486	1609	56	0	554	0	ALB	4	74275125	Frame_Shift_Ins	INS	-	TCGA-ES-A2HS-01A-11D-A183-10	21384898	74275125	116879151	65	15658	87	2									
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74275126	74275126	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.T537C	p.L179L	ACTCCTTTTCTTT	.	294	173	388	0	.	96	C	74275126	T	C	74275126	2	2	127	1	0	0	0	0	0	0	0	1	486	1828	64	2		2	ALB	4	74275126	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1	74275126	116879150	66	15659	87	2									
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74275205	74275205	+	Splice_Site	SNP	G	G	A	rs75828235	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.615+1G>A	.	CCAAAGGTATTAT	.	144	41	198	0	.	96	A	74275205	G	A	74275205	5	1	127	1	0	0	0	0	0	0	1	0	486	1275	44	3	634	3	ALB	4	74275205	Splice_Site	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	79	74275205	116879071	67	15660											
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762199	96762199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDHA2	NM_005390	exon1	c.C898A	p.R300S	AGTTATCGTACAC	.	71	37	110	0	.	90	A	96762199	C	A	96762199	3	1	127	1	0	0	0	0	1	0	0	0	11665	884	31	1	900	1	PDHA2	4	96762199	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	22486994	96762199	94392077	68	15661											
PLK4	10733	hgsc.bcm.edu;bcgsc.ca	37	4	128803010	128803010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK4	NM_001190799	exon2	c.G55T	p.G19C	CTGCTTGGTAAAG	.	98	4	181	0	.	333	T	128803010	G	T	128803010	3	4	127	1	0	0	0	0	1	0	0	0	12098	1348	47	3	61	3	PLK4	4	128803010	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	32040811	128803010	62351266	69	15662											
MLF1IP	79682	hgsc.bcm.edu;bcgsc.ca	37	4	185646185	185646185	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLF1IP	NM_024629	exon4	c.T246C	p.A82A	TTCATCAGCATAT	.	83	5	111	0	.	90	G	185646185	A	G	185646185	2	3	127	1	0	0	0	0	0	0	0	1	9615	175	7	2		2	MLF1IP	4	185646185	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	56843175	185646185	5508091	70	15663											
C6	729	hgsc.bcm.edu;bcgsc.ca	37	5	41186295	41186295	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6	NM_001115131	exon6	c.A603G	p.A201A	CTCTCCTGCCAGA	.	97	4	174	0	.	95	C	41186295	T	C	41186295	2	2	127	1	0	0	0	0	0	0	0	1	2315	1567	55	2		2	C6	5	41186295	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		41186295	139728965	71	15664											
PLK2	10769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	57753099	57753099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK2	NM_006622	exon7	c.C917A	p.P306H	TTGGCAGGAGCCA	.	20	4	46	0	.	409	T	57753099	G	T	57753099	3	4	127	1	0	0	0	0	1	0	0	0	12096	1000	35	3	1172	3	PLK2	5	57753099	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	16566804	57753099	123162161	72	15665											
HMGCR	3156	hgsc.bcm.edu;bcgsc.ca	37	5	74638583	74638583	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMGCR	NM_001130996	exon2	c.A153G	p.P51P	ATGTCCAAAGTTT	.	91	5	159	0	.	227	G	74638583	A	G	74638583	2	3	127	1	0	0	0	0	0	0	0	1	7231	117	5	2		2	HMGCR	5	74638583	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	16885484	74638583	106276677	73	15666											
JMY	133746	hgsc.bcm.edu;bcgsc.ca	37	5	78587025	78587025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMY	NM_152405	exon4	c.T1430C	p.M477T	AACGGATGGAAAA	.	77	4	119	0	.	227	C	78587025	T	C	78587025	3	2	127	1	0	0	0	0	1	0	0	0	7957	1464	51	2	1444	2	JMY	5	78587025	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	3948442	78587025	102328235	74	15667											
HOMER1	9456	hgsc.bcm.edu;bcgsc.ca	37	5	78692728	78692728	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMER1	NM_001277077	exon6	c.406-2A>G	.	ATTTCCTAGAAAA	.	123	5	240	0	.	90	C	78692728	T	C	78692728	5	2	127	1	0	0	0	0	0	0	1	0	7278	1536	53	2	278	2	HOMER1	5	78692728	Splice_Site	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	105703	78692728	102222532	75	15668											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	89971070	89971070	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPR98	NM_032119	exon24	c.G5121A	p.Q1707Q	GCTGCAGTTCTCC	.	53	41	84	0	.	103	A	89971070	G	A	89971070	2	1	127	1	0	0	0	0	0	0	0	1	6721	1020	36	3		3	GPR98	5	89971070	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	11278342	89971070	90944190	76	15669											
MCTP1	79772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	94245051	94245051	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCTP1	NM_024717	exon10	c.A1557G	p.E519E	AAATTGTTCCCTC	.	105	6	175	0	.	92	C	94245051	T	C	94245051	2	2	127	1	0	0	0	0	0	0	0	1	9400	1722	60	2		2	MCTP1	5	94245051	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4273981	94245051	86670209	77	15670											
EFNA5	1946	hgsc.bcm.edu;bcgsc.ca	37	5	106723416	106723416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EFNA5	NM_001962	exon3	c.A475G	p.R159G	TTGGTCTCACAAA	.	66	4	168	0	.	90	C	106723416	T	C	106723416	3	2	127	1	0	0	0	0	1	0	0	0	4954	1559	54	2	223	2	EFNA5	5	106723416	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	12478365	106723416	74191844	78	15671											
STARD4	134429	hgsc.bcm.edu;bcgsc.ca	37	5	110837775	110837775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STARD4	NM_139164	exon4	c.A167G	p.Q56R	ACACCTTGGGCTT	.	70	4	99	0	.	227	C	110837775	T	C	110837775	3	2	127	1	0	0	0	0	1	0	0	0	15258	1812	63	2	462	2	STARD4	5	110837775	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4114359	110837775	70077485	79	15672											
SNCAIP	9627	hgsc.bcm.edu;bcgsc.ca	37	5	121739502	121739502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNCAIP	NM_001242935	exon3	c.A26G	p.H9R	CACATCACTCAAG	.	95	6	142	0	.	92	G	121739502	A	G	121739502	3	3	127	1	0	0	0	0	1	0	0	0	14841	146	6	2	78	2	SNCAIP	5	121739502	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	10901727	121739502	59175758	80	15673											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140563037	140563037	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHB16	NM_020957	exon1	c.T903A	p.V301V	GGAAGTTCGACTG	.	39	27	72	0	.	92	A	140563037	T	A	140563037	2	1	127	1	0	0	0	0	0	0	0	1	11541	1770	62	4		4	PCDHB16	5	140563037	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	18823535	140563037	40352223	81	15674											
SPARC	6678	hgsc.bcm.edu;bcgsc.ca	37	5	151049257	151049257	+	Missense_Mutation	SNP	T	T	C	rs200223394		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPARC	NM_003118	exon6	c.A419G	p.K140R	TGGAGCTTGTGGC	.	123	5	163	0	T|0.999;C|0.001	514	C	151049257	T	C	151049257	3	2	127	1	0	0	0	0	1	0	0	0	14994	1609	56	2	512	2	SPARC	5	151049257	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	10486220	151049257	29866003	82	15675											
ZKSCAN3	80317	hgsc.bcm.edu;bcgsc.ca	37	6	28333988	28333988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZKSCAN3	NM_024493	exon6	c.A1543G	p.K515E	TGTGGAAAAGGCT	.	72	4	88	0	.	92	G	28333988	A	G	28333988	3	3	127	1	0	0	0	0	1	0	0	0	17685	15	1	2	1561	2	ZKSCAN3	6	28333988	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10		28333988	142781079	83	15676											
TNXB	7148	hgsc.bcm.edu;bcgsc.ca	37	6	32057134	32057134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNXB	NM_019105	exon5	c.T2381C	p.F794S	GCTGTGAATGGGG	.	65	4	58	0	.	90	G	32057134	A	G	32057134	3	3	127	1	0	0	0	0	1	0	0	0	16343	246	9	2	12492	2	TNXB	6	32057134	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	3723146	32057134	139057933	84	15677											
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32820940	32820940	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAP1	NM_000593	exon1	c.G654T	p.G218G	GAGGCTCCCGAGT	.	103	32	129	0	.	91	A	32820940	C	A	32820940	2	1	127	1	0	0	0	0	0	0	0	1	15547	842	30	3		3	TAP1	6	32820940	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	763806	32820940	138294127	85	15678											
ZNF318	24149	hgsc.bcm.edu;bcgsc.ca	37	6	43308192	43308192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF318	NM_014345	exon10	c.C3544A	p.R1182S	CTTGGCGGTCCAG	.	59	4	89	0	.	157	T	43308192	G	T	43308192	3	4	127	1	0	0	0	0	1	0	0	0	17833	1116	39	1	3299	1	ZNF318	6	43308192	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	10487252	43308192	127806875	86	15679											
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55223877	55223877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GFRAL	NM_207410	exon6	c.A893C	p.Q298P	TTACACAAAGTGA	.	120	63	134	0	.	154	C	55223877	A	C	55223877	3	2	127	1	0	0	0	0	1	0	0	0	6351	130	5	5	915	5	GFRAL	6	55223877	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	11915685	55223877	115891190	87	15680											
KIAA1586	57691	hgsc.bcm.edu;bcgsc.ca	37	6	56917492	56917492	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1586	NM_020931	exon4	c.T195C	p.F65F	TCTGTTTCCTAAA	.	81	4	96	0	.	44	C	56917492	T	C	56917492	2	2	127	1	0	0	0	0	0	0	0	1	8245	1780	62	2		2	KIAA1586	6	56917492	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1693615	56917492	114197575	88	15681											
HACE1	57531	hgsc.bcm.edu;bcgsc.ca	37	6	105259252	105259252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HACE1	NM_020771	exon7	c.T551C	p.L184P	CTGTCTAGCAAGC	.	67	4	117	0	.	663	G	105259252	A	G	105259252	3	3	127	1	0	0	0	0	1	0	0	0	6940	420	15	2	2250	2	HACE1	6	105259252	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	48341760	105259252	65855815	89	15682											
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106999726	106999726	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AIM1	NM_001624	exon12	c.4089-1G>T	.	TTCTTAGATGGGT	.	98	4	161	0	.	139	T	106999726	G	T	106999726	5	4	127	1	0	0	0	0	0	0	1	0	430	956	33	3	4134	3	AIM1	6	106999726	Splice_Site	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1740474	106999726	64115341	90	15683											
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	6	111686477	111686477	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	REV3L	NM_002912	exon15	c.A6744G	p.T2248T	TGCTTGTGTTAAC	.	89	4	162	0	.	294	C	111686477	T	C	111686477	2	2	127	1	0	0	0	0	0	0	0	1	13240	1683	59	2		2	REV3L	6	111686477	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4686751	111686477	59428590	91	15684											
C6orf58	352999	hgsc.bcm.edu;bcgsc.ca	37	6	127902353	127902353	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf58	NM_001010905	exon4	c.T600C	p.F200F	TAAGTTTGATGAT	.	89	4	128	0	.	90	C	127902353	T	C	127902353	2	2	127	1	0	0	0	0	0	0	0	1	2367	1809	63	2		2	C6orf58	6	127902353	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	16215876	127902353	43212714	92	15685											
MAP3K5	4217	hgsc.bcm.edu;bcgsc.ca	37	6	136882716	136882716	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP3K5	NM_005923	exon28	c.C3942A	p.T1314T	CCAGTCGGTAAGT	.	128	9	218	0	.	982	T	136882716	G	T	136882716	2	4	127	1	0	0	0	0	0	0	0	1	9253	1103	39	1		1	MAP3K5	6	136882716	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	8980363	136882716	34232351	93	15686											
ADAT2	134637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143755117	143755117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAT2	NM_182503	exon3	c.C203T	p.A68V	CGAGTAGCCTGAA	.	25	17	37	0	.	90	A	143755117	G	A	143755117	3	1	127	1	0	0	0	0	1	0	0	0	285	985	34	3	388	3	ADAT2	6	143755117	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	6872401	143755117	27359950	94	15687											
ESR1	2099	hgsc.bcm.edu;bcgsc.ca	37	6	152382169	152382169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ESR1	NM_000125	exon6	c.A1279G	p.M427V	TTCGACATGCTGC	.	74	4	147	0	.	1042	G	152382169	A	G	152382169	3	3	127	1	0	0	0	0	1	0	0	0	5256	217	8	2	1301	2	ESR1	6	152382169	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	8627052	152382169	18732898	95	15688											
SYNJ2	8871	hgsc.bcm.edu;bcgsc.ca	37	6	158449995	158449995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNJ2	NM_003898	exon3	c.A422G	p.D141G	GCTTTGACCTGAC	.	61	5	114	0	.	227	G	158449995	A	G	158449995	3	3	127	1	0	0	0	0	1	0	0	0	15450	275	10	2	432	2	SYNJ2	6	158449995	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	6067826	158449995	12665072	96	15689											
LFNG	3955	hgsc.bcm.edu;bcgsc.ca	37	7	2552813	2552813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LFNG	NM_001166355	exon2	c.A70G	p.S24G	GCATGGAGCAAAT	.	98	4	140	0	.	636	G	2552813	A	G	2552813	3	3	127	1	0	0	0	0	1	0	0	0	8737	304	11	2	76	2	LFNG	7	2552813	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10		2552813	156585850	97	15690											
TNRC18	84629	hgsc.bcm.edu;bcgsc.ca	37	7	5396822	5396822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC18	NM_001080495	exon16	c.A4919G	p.D1640G	AACTTGTCCTGCT	.	199	9	212	0	.	46	C	5396822	T	C	5396822	3	2	127	1	0	0	0	0	1	0	0	0	16336	1667	58	2	4047	2	TNRC18	7	5396822	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	2844009	5396822	153741841	98	15691											
HIBADH	11112	hgsc.bcm.edu;bcgsc.ca	37	7	27672052	27672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIBADH	NM_152740	exon3	c.C265A	p.P89T	CTGCTGGGGAAGA	.	76	4	86	0	.	92	T	27672052	G	T	27672052	3	4	127	1	0	0	0	0	1	0	0	0	7099	1232	43	3	769	3	HIBADH	7	27672052	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	22275230	27672052	131466611	99	15692											
ADCYAP1R1	117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	31125006	31125006	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCYAP1R1	NM_001118	exon9	c.A618G	p.K206K	CATCAAAGACTGG	.	39	4	39	0	.	91	G	31125006	A	G	31125006	2	3	127	1	0	0	0	0	0	0	0	1	303	69	3	2		2	ADCYAP1R1	7	31125006	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	3452954	31125006	128013657	100	15693											
STK17A	9263	hgsc.bcm.edu;bcgsc.ca	37	7	43663335	43663335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STK17A	NM_004760	exon6	c.G768T	p.M256I	TGTCATGCTTACA	.	82	5	81	0	.	335	T	43663335	G	T	43663335	3	4	127	1	0	0	0	0	1	0	0	0	15289	1319	46	3	790	3	STK17A	7	43663335	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	12538329	43663335	115475328	101	15694											
LANCL2	55915	ucsc.edu;bcgsc.ca	37	7	55459529	55459529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LANCL2	NM_018697	exon2	c.A248G	p.D83G	TTAAAGATCTTCT	.	48	4	36	0	.	516	G	55459529	A	G	55459529	3	3	127	1	0	0	0	0	1	0	0	0	8621	333	12	2	254	2	LANCL2	7	55459529	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	11796194	55459529	103679134	102	15695											
HIP1	3092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	75186064	75186064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIP1	NM_005338	exon17	c.A1633G	p.S545G	GTTGGCTTGTGGC	.	43	4	70	0	.	1085	C	75186064	T	C	75186064	3	2	127	1	0	0	0	0	1	0	0	0	7114	1609	56	2	1540	2	HIP1	7	75186064	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	19726535	75186064	83952599	103	15696											
FGL2	10875	hgsc.bcm.edu;bcgsc.ca	37	7	76829024	76829024	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	FGL2,nipple,malignant_melanoma,-2	FGL2	NM_006682	exon1	c.A87G	p.E29E	TTTAATTTCCTCT	.	78	4	79	0	.	92	C	76829024	T	C	76829024	2	2	127	1	0	0	0	0	0	0	0	1	5873	1838	64	2		2	FGL2	7	76829024	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1642960	76829024	82309639	104	15697											
ABCB1	5243	hgsc.bcm.edu;bcgsc.ca	37	7	87214929	87214929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCB1	NM_000927	exon5	c.G185T	p.G62V	CCAGCCCCATGGA	.	116	6	106	0	.	582	A	87214929	C	A	87214929	3	1	127	1	0	0	0	0	1	0	0	0	40	623	22	3	3757	3	ABCB1	7	87214929	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	10385905	87214929	71923734	105	15698											
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100334459	100334459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZAN	.	.	.	.	AATCGAACAGCTT	.	24	4	26	0	.	142	G	100334459	A	G	100334459	3	3	127	1	0	0	0	0	1	0	0	0	17510	43	2	2	295	2	ZAN	7	100334459	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	13119530	100334459	58804204	106	15699											
ACHE	43	hgsc.bcm.edu;bcgsc.ca	37	7	100487872	100487872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACHE	NM_000665	exon5	c.A1808G	p.D603G	TAGTGGTCGAACT	.	141	6	207	0	.	92	C	100487872	T	C	100487872	3	2	127	1	0	0	0	0	1	0	0	0	141	1667	58	2	40	2	ACHE	7	100487872	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	153413	100487872	58650791	107	15700											
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101840082	101840082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUX1	NM_001202543	exon15	c.C1424A	p.S475Y	GCTCATCCCTGGC	.	138	44	174	0	.	160	A	101840082	C	A	101840082	3	1	127	1	0	0	0	0	1	0	0	0	4064	855	30	3	1516	3	CUX1	7	101840082	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1352210	101840082	57298581	108	15701											
CUL1	8454	hgsc.bcm.edu;bcgsc.ca	37	7	148451110	148451110	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUL1	NM_003592	exon3	c.A183G	p.Q61Q	AAACCAAGCACGA	.	93	5	100	0	.	226	G	148451110	A	G	148451110	2	3	127	1	0	0	0	0	0	0	0	1	4054	69	3	2		2	CUL1	7	148451110	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	46611028	148451110	10687553	109	15702											
FASTK	10922	hgsc.bcm.edu;bcgsc.ca	37	7	150774997	150774997	+	Silent	SNP	A	A	G	rs189454687		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FASTK	NM_006712	exon5	c.T1008C	p.V336V	GGAAAAAACAAAG	.	116	5	223	0	A|0.999;G|0.000	359	G	150774997	A	G	150774997	2	3	127	1	0	0	0	0	0	0	0	1	5684	1	1	2		2	FASTK	7	150774997	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2323887	150774997	8363666	110	15703											
NCAPG2	54892	hgsc.bcm.edu;bcgsc.ca	37	7	158472756	158472756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCAPG2	NM_017760	exon11	c.T1042C	p.S348P	CATTTGATCGAAC	.	120	5	146	0	.	272	G	158472756	A	G	158472756	3	3	127	1	0	0	0	0	1	0	0	0	10208	333	12	2	2461	2	NCAPG2	7	158472756	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	7697759	158472756	665907	111	15704											
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2823315	2823315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CSMD1	NM_033225	exon59	c.A9262G	p.S3088G	GTTTGCTCGGATT	.	75	4	145	0	.	86	C	2823315	T	C	2823315	3	2	127	1	0	0	0	0	1	0	0	0	3944	1551	54	2	1480	2	CSMD1	8	2823315	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		2823315	143540707	112	15705											
PCM1	5108	hgsc.bcm.edu;bcgsc.ca	37	8	17868140	17868140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCM1	NM_006197	exon32	c.A5183G	p.H1728R	AAGATCATGGCTC	.	71	4	156	0	.	742	G	17868140	A	G	17868140	3	3	127	1	0	0	0	0	1	0	0	0	11584	217	8	2	5301	2	PCM1	8	17868140	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	15044825	17868140	128495882	113	15706											
LGI3	203190	hgsc.bcm.edu;bcgsc.ca	37	8	22012911	22012911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGI3	NM_139278	exon2	c.A272G	p.Q91R	AAGAACTGCAGCA	.	32	4	113	0	.	91	C	22012911	T	C	22012911	3	2	127	1	0	0	0	0	1	0	0	0	8753	1580	55	2	1402	2	LGI3	8	22012911	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4144771	22012911	124351111	114	15707											
C8orf58	541565	hgsc.bcm.edu;bcgsc.ca	37	8	22458617	22458617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C8orf58	NM_001013842	exon2	c.A263G	p.Q88R	TTTCTCAGGACTC	.	36	4	93	0	.	91	G	22458617	A	G	22458617	3	3	127	1	0	0	0	0	1	0	0	0	2433	188	7	2	269	2	C8orf58	8	22458617	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	445706	22458617	123905405	115	15708											
CCDC25	55246	hgsc.bcm.edu;bcgsc.ca	37	8	27605739	27605739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC25	NM_018246	exon7	c.A406G	p.T136A	CTTTGGTCTTTTC	.	110	5	249	0	.	90	C	27605739	T	C	27605739	3	2	127	1	0	0	0	0	1	0	0	0	2800	1667	58	2	232	2	CCDC25	8	27605739	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	5147122	27605739	118758283	116	15709											
FZD3	7976	hgsc.bcm.edu;bcgsc.ca	37	8	28385289	28385289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FZD3	NM_017412	exon5	c.A1012G	p.I338V	TGGGGCATCCCCG	.	59	4	133	0	.	659	G	28385289	A	G	28385289	3	3	127	1	0	0	0	0	1	0	0	0	6131	217	8	2	1022	2	FZD3	8	28385289	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	779550	28385289	117978733	117	15710											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	52321594	52321594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXDNL	NM_144651	exon17	c.C2590T	p.R864C	TGGAGCGCGCGAA	.	100	6	87	0	.	70	A	52321594	G	A	52321594	3	1	127	1	0	0	0	0	1	0	0	0	12848	1087	38	1	1829	1	PXDNL	8	52321594	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	23936305	52321594	94042428	118	15711											
CALB1	793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91072909	91072909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CALB1	NM_004929	exon10	c.A620C	p.D207A	TTTTCATCTATGT	.	137	40	105	0	.	91	G	91072909	T	G	91072909	3	3	127	1	0	0	0	0	1	0	0	0	2573	1435	50	5	173	5	CALB1	8	91072909	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	38751315	91072909	55291113	119	15712											
RNF139	11236	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	125487462	125487462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF139	NM_007218	exon1	c.T112C	p.F38L	GCCATCTTCAACT	.	58	6	66	0	.	226	C	125487462	T	C	125487462	3	2	127	1	0	0	0	0	1	0	0	0	13442	1609	56	2	114	2	RNF139	8	125487462	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	34414553	125487462	20876560	120	15713											
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131130888	131130888	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASAP1	NM_018482	exon19	c.T1641C	p.Y547Y	ATCTACATACTTT	.	263	72	177	0	.	95	G	131130888	A	G	131130888	2	3	127	1	0	0	0	0	0	0	0	1	1010	224	8	2		2	ASAP1	8	131130888	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	5643426	131130888	15233134	121	15714											
ADCY8	114	hgsc.bcm.edu;bcgsc.ca	37	8	131795974	131795974	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCY8	NM_001115	exon17	c.C3231A	p.I1077I	CTTGTTGATCTCC	.	110	6	115	0	.	157	T	131795974	G	T	131795974	2	4	127	1	0	0	0	0	0	0	0	1	300	1280	45	3		3	ADCY8	8	131795974	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	665086	131795974	14568048	122	15715											
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145740718	145740718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RECQL4	NM_004260	exon7	c.A1382T	p.Q461L	GCCAACTGCCCTG	.	166	10	154	0	.	1083	A	145740718	T	A	145740718	3	1	127	1	0	0	0	0	1	0	0	0	13202	1580	55	4	2305	4	RECQL4	8	145740718	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	13944744	145740718	623304	123	15716											
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	2729648	2729648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCNV2	NM_133497	exon2	c.T1559G	p.F520C	TGAACTTCATGCA	.	113	11	187	0	.	515	G	2729648	T	G	2729648	3	3	127	1	0	0	0	0	1	0	0	0	8095	1783	62	5	1565	5	KCNV2	9	2729648	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		2729648	138483783	124	15717											
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13193255	13193255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPDZ	NM_003829	exon14	c.A1714G	p.T572A	CCACTGTCGCTTC	.	60	4	78	0	.	231	C	13193255	T	C	13193255	3	2	127	1	0	0	0	0	1	0	0	0	9722	1667	58	2	4543	2	MPDZ	9	13193255	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	10463607	13193255	128020176	125	15718											
UBAP2	55833	hgsc.bcm.edu;bcgsc.ca	37	9	33996317	33996317	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBAP2	NM_018449	exon4	c.A192G	p.T64T	TTTCCCTGTCACT	.	119	5	168	0	.	94	C	33996317	T	C	33996317	2	2	127	1	0	0	0	0	0	0	0	1	16834	1567	55	2		2	UBAP2	9	33996317	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	20803062	33996317	107217114	126	15719											
TLE4	7091	hgsc.bcm.edu;bcgsc.ca	37	9	82337475	82337475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLE4	NM_007005	exon18	c.T2096C	p.L699P	TACATCTTCATGA	.	125	5	207	0	.	524	C	82337475	T	C	82337475	3	2	127	1	0	0	0	0	1	0	0	0	15938	1609	56	2	2166	2	TLE4	9	82337475	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	48341158	82337475	58875956	127	15720											
PHYHD1	254295	hgsc.bcm.edu;bcgsc.ca	37	9	131702690	131702690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PHYHD1	NM_001100876	exon10	c.T500C	p.L167P	AGCCCCTGGGCCG	.	87	4	107	0	.	90	C	131702690	T	C	131702690	3	2	127	1	0	0	0	0	1	0	0	0	11865	1580	55	2	530	2	PHYHD1	9	131702690	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	49365215	131702690	9510741	128	15721											
COL5A1	1289	hgsc.bcm.edu;bcgsc.ca	37	9	137716488	137716488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL5A1	NM_000093	exon62	c.T4741C	p.S1581P	CAGGCATCCAGGA	.	96	6	168	0	.	524	C	137716488	T	C	137716488	3	2	127	1	0	0	0	0	1	0	0	0	3696	1435	50	2	4987	2	COL5A1	9	137716488	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	6013798	137716488	3496943	129	15722											
MCM10	55388	hgsc.bcm.edu;bcgsc.ca	37	10	13212949	13212949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM10	NM_018518	exon3	c.C35T	p.T12I	TGCTGACCGCACT	.	121	5	138	0	.	653	T	13212949	C	T	13212949	3	4	127	1	0	0	0	0	1	0	0	0	9385	507	18	3	41	3	MCM10	10	13212949	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10		13212949	122321798	130	15723											
YME1L1	10730	hgsc.bcm.edu;bcgsc.ca	37	10	27409405	27409405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YME1L1	NM_139312	exon14	c.A1541G	p.E514G	AAAATTTCTGTTC	.	88	4	117	0	.	91	C	27409405	T	C	27409405	3	2	127	1	0	0	0	0	1	0	0	0	17484	1783	62	2	808	2	YME1L1	10	27409405	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	14196456	27409405	108125342	131	15724											
LRRTM3	347731	hgsc.bcm.edu;bcgsc.ca	37	10	68857536	68857536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRTM3	NM_178011	exon3	c.T1728A	p.H576Q	TGACCATAAACAG	.	91	4	93	0	.	93	A	68857536	T	A	68857536	3	1	127	1	0	0	0	0	1	0	0	0	9041	1403	49	4	1738	4	LRRTM3	10	68857536	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	41448131	68857536	66677211	132	15725											
MYPN	84665	hgsc.bcm.edu;bcgsc.ca	37	10	69925542	69925542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYPN	NM_001256267	exon10	c.A1567G	p.T523A	TACGGCACAGTGT	.	76	4	85	0	.	95	G	69925542	A	G	69925542	3	3	127	1	0	0	0	0	1	0	0	0	10098	159	6	2	1597	2	MYPN	10	69925542	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	1068006	69925542	65609205	133	15726											
VCL	7414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75854142	75854142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCL	NM_003373	exon11	c.C1466T	p.A489V	CCAAAGCAGCTGT	.	239	11	258	0	.	93	T	75854142	C	T	75854142	3	4	127	1	0	0	0	0	1	0	0	0	17136	710	25	3	1508	3	VCL	10	75854142	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	5928600	75854142	59680605	134	15727											
ELOVL3	83401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103988767	103988767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ELOVL3	NM_152310	exon4	c.A571T	p.N191Y	GCTGCCAACGTGA	.	122	5	149	0	.	92	T	103988767	A	T	103988767	3	4	127	1	0	0	0	0	1	0	0	0	5075	130	5	4	585	4	ELOVL3	10	103988767	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	28134625	103988767	31545980	135	15728											
SFXN2	118980	hgsc.bcm.edu;bcgsc.ca	37	10	104486433	104486433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SFXN2	NM_178858	exon2	c.C40A	p.R14S	GCCCCCCGTTGGG	.	64	4	99	0	.	90	A	104486433	C	A	104486433	3	1	127	1	0	0	0	0	1	0	0	0	14195	652	23	1	42	1	SFXN2	10	104486433	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	497666	104486433	31048314	136	15729											
PDCD11	22984	hgsc.bcm.edu;bcgsc.ca	37	10	105184772	105184772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDCD11	NM_014976	exon20	c.T2795C	p.V932A	CGATTGTGCAGCA	.	77	4	91	0	.	275	C	105184772	T	C	105184772	3	2	127	1	0	0	0	0	1	0	0	0	11617	1696	59	2	2869	2	PDCD11	10	105184772	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	698339	105184772	30349975	137	15730											
ZNF511	118472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135123793	135123793	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF511	NM_145806	exon4	c.554+1G>A	.	CAGAAGGTAGGGA	.	44	16	34	0	.	90	A	135123793	G	A	135123793	5	1	127	1	0	0	0	0	0	0	1	0	17952	1275	44	3	569	3	ZNF511	10	135123793	Splice_Site	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	29939021	135123793	410954	138	15731											
MUC2	4583	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	1092653	1092653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUC2	NM_002457	exon30	c.C4472A	p.T1491K	CCACCACAACCAC	.	2125	391	3967	2	.	90	A	1092653	C	A	1092653	3	1	127	1	0	0	0	0	1	0	0	0	9975	478	17	3	4590	3	MUC2	11	1092653	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10		1092653	133913863	139	15732											
TRIM3	10612	hgsc.bcm.edu;bcgsc.ca	37	11	6472512	6472512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM3	NM_001248006	exon8	c.G1690A	p.G564S	ACTTGCCCTCAGG	.	53	4	85	0	.	714	T	6472512	C	T	6472512	3	4	127	1	0	0	0	0	1	0	0	0	16501	623	22	3	564	3	TRIM3	11	6472512	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	5379859	6472512	128534004	140	15733											
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7670813	7670813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPFIBP2	NM_003621	exon21	c.C2049G	p.I683M	CAGCATCAAATGT	.	199	67	303	0	.	273	G	7670813	C	G	7670813	3	3	127	1	0	0	0	0	1	0	0	0	12314	816	29	4	2127	4	PPFIBP2	11	7670813	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1198301	7670813	127335703	141	15734											
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9069079	9069079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCUBE2	NM_020974	exon16	c.G1826T	p.R609L	TCGGTTCGCTTTA	.	174	17	228	0	.	92	A	9069079	C	A	9069079	3	1	127	1	0	0	0	0	1	0	0	0	13945	884	31	1	1292	1	SCUBE2	11	9069079	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1398266	9069079	125937437	142	15735											
INSC	387755	hgsc.bcm.edu;bcgsc.ca	37	11	15247245	15247245	+	Silent	SNP	G	G	T	rs111784838	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon9	c.G1182T	p.A394A	CTCTGCGGCCCTT	.	66	4	96	0	G|0.999;A|0.001	94	T	15247245	G	T	15247245	2	4	127	1	0	0	0	0	0	0	0	1	7764	1103	39	1		1	INSC	11	15247245	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	6178166	15247245	119759271	143	15736											
INSC	387755	hgsc.bcm.edu;bcgsc.ca	37	11	15262003	15262003	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon12	c.T1545C	p.R515R	GTCCCGTCTCATC	.	111	5	165	0	.	94	C	15262003	T	C	15262003	2	2	127	1	0	0	0	0	0	0	0	1	7764	1654	58	2		2	INSC	11	15262003	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	14758	15262003	119744513	144	15737											
TSG101	7251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18502150	18502150	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TSG101	NM_006292	exon10	c.G1116A	p.Q372Q	CCTCAGCTGGAAC	.	127	50	215	0	.	90	T	18502150	C	T	18502150	2	4	127	1	0	0	0	0	0	0	0	1	16613	796	28	3		3	TSG101	11	18502150	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	3240147	18502150	116504366	145	15738											
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18754887	18754887	+	Silent	SNP	G	G	A	rs144666949		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPN5	NM_032781	exon11	c.C1113T	p.A371A	CTGAGTGGCGATG	.	86	27	95	0	G|1.000;A|0.000	229	A	18754887	G	A	18754887	2	1	127	1	0	0	0	0	0	0	0	1	12791	1335	47	3		3	PTPN5	11	18754887	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	252737	18754887	116251629	146	15739											
AMBRA1	55626	hgsc.bcm.edu;bcgsc.ca	37	11	46569854	46569854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMBRA1	NM_001267783	exon2	c.A77G	p.Q26R	AGCCGCTGAGCTC	.	97	5	160	0	.	136	C	46569854	T	C	46569854	3	2	127	1	0	0	0	0	1	0	0	0	565	1580	55	2	3621	2	AMBRA1	11	46569854	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	27814967	46569854	88436662	147	15740											
MS4A4A	51338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60073590	60073590	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MS4A4A	NM_148975	exon6	c.G564A	p.V188V	CATGGTGCTCCTC	.	458	95	674	0	.	90	A	60073590	G	A	60073590	2	1	127	1	0	0	0	0	0	0	0	1	9862	1306	46	3		3	MS4A4A	11	60073590	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	13503736	60073590	74932926	148	15741											
CD6	923	hgsc.bcm.edu;bcgsc.ca	37	11	60785418	60785418	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD6	NM_006725	exon11	c.A1770G	p.S590S	TTCTTCAGAGAGG	.	58	4	81	0	.	227	G	60785418	A	G	60785418	2	3	127	1	0	0	0	0	0	0	0	1	3028	175	7	2		2	CD6	11	60785418	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	711828	60785418	74221098	149	15742											
AHNAK	79026	hgsc.bcm.edu;bcgsc.ca	37	11	62300901	62300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AHNAK	NM_001620	exon5	c.A988G	p.R330G	AAACCCTCAGCCC	.	76	4	106	0	.	109	C	62300901	T	C	62300901	3	2	127	1	0	0	0	0	1	0	0	0	414	1550	54	2	16804	2	AHNAK	11	62300901	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1515483	62300901	72705615	150	15743											
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63680389	63680389	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.C922T	p.L308L	GGCGCAGGCTGCT	.	54	14	101	0	.	92	A	63680389	G	A	63680389	2	1	127	1	0	0	0	0	0	0	0	1	13183	991	35	3		3	RCOR2	11	63680389	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1379488	63680389	71326127	151	15744											
RCOR2	283248	hgsc.bcm.edu;bcgsc.ca	37	11	63680410	63680410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.A901G	p.M301V	GCTTCATGCTCTG	.	52	4	89	0	.	92	C	63680410	T	C	63680410	3	2	127	1	0	0	0	0	1	0	0	0	13183	1464	51	2	686	2	RCOR2	11	63680410	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	21	63680410	71326106	152	15745											
SLC22A11	55867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64323631	64323631	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A11	NM_018484	exon1	c.C160T	p.L54L	CACATGCTGGACA	.	90	34	177	0	.	91	T	64323631	C	T	64323631	2	4	127	1	0	0	0	0	0	0	0	1	14442	796	28	3		3	SLC22A11	11	64323631	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	643221	64323631	70682885	153	15746											
ATG2A	23130	hgsc.bcm.edu;bcgsc.ca	37	11	64681337	64681337	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATG2A	NM_015104	exon4	c.G546A	p.P182P	ATCACCCGGAGAG	.	79	4	143	0	.	69	T	64681337	C	T	64681337	2	4	127	1	0	0	0	0	0	0	0	1	1093	639	23	1		1	ATG2A	11	64681337	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	357706	64681337	70325179	154	15747											
DPF2	5977	hgsc.bcm.edu;bcgsc.ca	37	11	65113180	65113180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPF2	NM_006268	exon7	c.C681G	p.H227Q	TTACCACTATGCC	.	57	4	79	0	.	91	G	65113180	C	G	65113180	3	3	127	1	0	0	0	0	1	0	0	0	4717	564	20	4	707	4	DPF2	11	65113180	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	431843	65113180	69893336	155	15748											
UVRAG	7405	hgsc.bcm.edu;bcgsc.ca	37	11	75851784	75851784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UVRAG	NM_003369	exon15	c.C1427A	p.P476H	CAATCCCTGTTCC	.	74	4	119	0	.	229	A	75851784	C	A	75851784	3	1	127	1	0	0	0	0	1	0	0	0	17105	681	24	3	1485	3	UVRAG	11	75851784	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	10738604	75851784	59154732	156	15749											
PAK1	5058	broad.mit.edu;bcgsc.ca	37	11	77090985	77090985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAK1	NM_001128620	exon3	c.A245G	p.E82G	GTGTGTTCAAAAT	.	119	6	160	0	.	957	C	77090985	T	C	77090985	3	2	127	1	0	0	0	0	1	0	0	0	11399	1783	62	2	1497	2	PAK1	11	77090985	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1239201	77090985	57915531	157	15750											
TMEM135	65084	hgsc.bcm.edu;bcgsc.ca	37	11	87029247	87029247	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM135	NM_022918	exon13	c.T1146C	p.Y382Y	CATCTATTCCATC	.	69	4	103	0	.	514	C	87029247	T	C	87029247	2	2	127	1	0	0	0	0	0	0	0	1	16048	1500	52	2		2	TMEM135	11	87029247	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	9938262	87029247	47977269	158	15751											
AMOTL1	154810	hgsc.bcm.edu;bcgsc.ca	37	11	94602390	94602390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMOTL1	NM_130847	exon12	c.A2516G	p.E839G	ACCATGAGCATGC	.	93	5	108	0	.	91	G	94602390	A	G	94602390	3	3	127	1	0	0	0	0	1	0	0	0	583	304	11	2	2562	2	AMOTL1	11	94602390	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	7573143	94602390	40404126	159	15752											
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103058312	103058312	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC2H1	NM_001377	exon43	c.A7137G	p.Q2379Q	CCTACAACAGGTA	.	88	4	106	0	.	68	G	103058312	A	G	103058312	2	3	127	1	0	0	0	0	0	0	0	1	4846	40	2	2		2	DYNC2H1	11	103058312	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	8455922	103058312	31948204	160	15753											
SORL1	6653	hgsc.bcm.edu;bcgsc.ca	37	11	121478830	121478830	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SORL1	NM_003105	exon38	c.T5184C	p.S1728S	GACTAGTCGTGGA	.	76	4	75	0	.	228	C	121478830	T	C	121478830	2	2	127	1	0	0	0	0	0	0	0	1	14934	1664	58	2		2	SORL1	11	121478830	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	18420518	121478830	13527686	161	15754											
WNK1	65125	hgsc.bcm.edu;bcgsc.ca	37	12	922831	922831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon2	c.G783T	p.E261D	GTCTGAGAGGCAG	.	73	5	113	0	.	916	T	922831	G	T	922831	3	4	127	1	0	0	0	0	1	0	0	0	17374	933	33	3	789	3	WNK1	12	922831	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10		922831	132929064	162	15755											
WNK1	65125	hgsc.bcm.edu;bcgsc.ca	37	12	994233	994233	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon19	c.T5043C	p.V1681V	TGCAGTTGTCTCA	.	99	4	103	0	.	916	C	994233	T	C	994233	2	2	127	1	0	0	0	0	0	0	0	1	17374	1799	63	2		2	WNK1	12	994233	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	71402	994233	132857662	163	15756											
C12orf4	57102	hgsc.bcm.edu;bcgsc.ca	37	12	4600397	4600397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf4	NM_020374	exon12	c.A1444G	p.M482V	TAGTCATTTCCTA	.	100	6	119	0	.	226	C	4600397	T	C	4600397	3	2	127	1	0	0	0	0	1	0	0	0	1685	1493	52	2	226	2	C12orf4	12	4600397	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	3606164	4600397	129251498	164	15757											
PEX5	5830	hgsc.bcm.edu;bcgsc.ca	37	12	7344169	7344169	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PEX5	NM_001131023	exon5	c.T366C	p.P122P	AGCCCCTGGTGTG	.	66	4	82	0	.	91	C	7344169	T	C	7344169	2	2	127	1	0	0	0	0	0	0	0	1	11748	1567	55	2		2	PEX5	12	7344169	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	2743772	7344169	126507726	165	15758											
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9318700	9318700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PZP	NM_002864	exon18	c.A2206G	p.T736A	GCACCGTTTCAGG	.	74	4	143	0	.	157	C	9318700	T	C	9318700	3	2	127	1	0	0	0	0	1	0	0	0	12869	1725	60	2	2318	2	PZP	12	9318700	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1974531	9318700	124533195	166	15759											
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33031343	33031343	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PKP2	NM_004572	exon3	c.G471A	p.E157E	AGCCCTCTCCGGG	.	110	15	138	0	.	92	T	33031343	C	T	33031343	2	4	127	1	0	0	0	0	0	0	0	1	11985	912	32	3		3	PKP2	12	33031343	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	23712643	33031343	100820552	167	15760											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43847742	43847742	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ADAMTS20,brain,glioma,-1	ADAMTS20	NM_025003	exon12	c.C1728T	p.I576I	ACTTTCGATTCCG	.	76	46	105	0	.	795	A	43847742	G	A	43847742	2	1	127	1	0	0	0	0	0	0	0	1	266	1048	37	1		1	ADAMTS20	12	43847742	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	10816399	43847742	90004153	168	15761											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43847776	43847776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS20	NM_025003	exon12	c.A1694G	p.Y565C	GAACTGTAAGGTT	.	87	47	114	0	.	795	C	43847776	T	C	43847776	3	2	127	1	0	0	0	0	1	0	0	0	266	1638	57	2	4149	2	ADAMTS20	12	43847776	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	34	43847776	90004119	169	15762											
MLL2	8085	hgsc.bcm.edu;bcgsc.ca	37	12	49421091	49421091	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL2	NM_003482	exon48	c.A14658G	p.P4886P	TGGCTCTGGGGCG	.	114	5	172	0	.	612	C	49421091	T	C	49421091	2	2	127	1	0	0	0	0	0	0	0	1	9621	1567	55	2		2	MLL2	12	49421091	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	5573315	49421091	84430804	170	15763											
ITGB7	3695	hgsc.bcm.edu;bcgsc.ca	37	12	53586193	53586193	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB7	NM_000889	exon14	c.C2076T	p.T692T	GTCCAGGGTCCGC	.	35	5	55	0	.	231	A	53586193	G	A	53586193	2	1	127	1	0	0	0	0	0	0	0	1	7900	1219	43	3		3	ITGB7	12	53586193	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	4165102	53586193	80265702	171	15764											
NCKAP1L	3071	hgsc.bcm.edu;bcgsc.ca	37	12	54932744	54932744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCKAP1L	NM_005337	exon30	c.T3260C	p.L1087P	TTTCTCTGCTCAT	.	66	4	99	0	.	93	C	54932744	T	C	54932744	3	2	127	1	0	0	0	0	1	0	0	0	10222	1580	55	2	3378	2	NCKAP1L	12	54932744	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1346551	54932744	78919151	172	15765											
ERBB3	2065	hgsc.bcm.edu;bcgsc.ca	37	12	56493513	56493513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERBB3	NM_001982	exon24	c.G2921T	p.R974L	CACCACGGTATCT	.	91	4	164	0	.	1403	T	56493513	G	T	56493513	3	4	127	1	0	0	0	0	1	0	0	0	5208	1116	39	1	3146	1	ERBB3	12	56493513	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1560769	56493513	77358382	173	15766											
PAN2	9924	hgsc.bcm.edu;bcgsc.ca	37	12	56726754	56726754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAN2	NM_014871	exon2	c.A125G	p.E42G	ACTCCCTCTGGGT	.	61	4	57	0	.	702	C	56726754	T	C	56726754	3	2	127	1	0	0	0	0	1	0	0	0	11414	1551	54	2	3583	2	PAN2	12	56726754	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	233241	56726754	77125141	174	15767											
BAZ2A	11176	hgsc.bcm.edu;bcgsc.ca	37	12	56993526	56993526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAZ2A	NM_013449	exon26	c.T5138C	p.V1713A	TCTGGGACAGCCT	.	55	4	105	0	.	22	G	56993526	A	G	56993526	3	3	127	1	0	0	0	0	1	0	0	0	1331	275	10	2	595	2	BAZ2A	12	56993526	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	266772	56993526	76858369	175	15768											
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57625269	57625269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHMT2	NM_005412	exon3	c.C237A	p.F79L	GAACTTCTGCAGC	.	148	80	179	0	.	91	A	57625269	C	A	57625269	3	1	127	1	0	0	0	0	1	0	0	0	14286	912	32	3	247	3	SHMT2	12	57625269	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	631743	57625269	76226626	176	15769											
USP15	9958	hgsc.bcm.edu;bcgsc.ca	37	12	62783254	62783254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP15	NM_001252078	exon12	c.G1517T	p.C506F	ATCTTTGTACAGC	.	89	5	149	0	.	1084	T	62783254	G	T	62783254	3	4	127	1	0	0	0	0	1	0	0	0	17043	1377	48	3	1472	3	USP15	12	62783254	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	5157985	62783254	71068641	177	15770											
LGR5	8549	hgsc.bcm.edu;bcgsc.ca	37	12	71955573	71955573	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGR5	NM_003667	exon8	c.C798T	p.S266S	TCATAGCAACAAT	.	59	3	81	0	.	527	T	71955573	C	T	71955573	2	4	127	1	0	0	0	0	0	0	0	1	8757	709	25	3		3	LGR5	12	71955573	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	9172319	71955573	61896322	178	15771											
BRAP	8315	hgsc.bcm.edu;bcgsc.ca	37	12	112098444	112098444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRAP	NM_006768	exon7	c.C932T	p.P311L	TCTACTGGCTCGG	.	121	5	172	0	.	710	A	112098444	G	A	112098444	3	1	127	1	0	0	0	0	1	0	0	0	1497	1348	47	3	870	3	BRAP	12	112098444	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	40142871	112098444	21753451	179	15772											
OAS1	4938	hgsc.bcm.edu;bcgsc.ca	37	12	113357220	113357220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS1	NM_016816	exon6	c.G1065T	p.E355D	CGATGAGACCGAC	.	77	5	93	0	.	70	T	113357220	G	T	113357220	3	4	127	1	0	0	0	0	1	0	0	0	10799	933	33	3	1144	3	OAS1	12	113357220	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1258776	113357220	20494675	180	15773											
OAS2	4939	hgsc.bcm.edu;bcgsc.ca	37	12	113443013	113443013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS2	NM_002535	exon7	c.C1454T	p.A485V	TTCCTGCCTTTAA	.	65	4	81	0	.	91	T	113443013	C	T	113443013	3	4	127	1	0	0	0	0	1	0	0	0	10800	739	26	3	1551	3	OAS2	12	113443013	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	85793	113443013	20408882	181	15774											
KSR2	283455	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	117969500	117969500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KSR2	NM_173598	exon11	c.A1613G	p.Y538C	TATTTGTAGTAGT	.	40	4	68	0	.	1449	C	117969500	T	C	117969500	3	2	127	1	0	0	0	0	1	0	0	0	8582	1638	57	2	1192	2	KSR2	12	117969500	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4526487	117969500	15882395	182	15775											
WSB2	55884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118472835	118472835	+	Silent	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WSB2	NM_018639	exon8	c.G1008C	p.G336G	GCAAAGCCCATTG	.	117	9	113	0	.	91	G	118472835	C	G	118472835	2	3	127	1	0	0	0	0	0	0	0	1	17402	726	26	4		4	WSB2	12	118472835	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	503335	118472835	15379060	183	15776											
PXN	5829	hgsc.bcm.edu;bcgsc.ca	37	12	120651722	120651722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXN	NM_001243756	exon10	c.G1474T	p.G492C	CGCAGCCGCCACA	.	71	4	103	0	.	660	A	120651722	C	A	120651722	3	1	127	1	0	0	0	0	1	0	0	0	12852	652	23	1	351	1	PXN	12	120651722	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	2178887	120651722	13200173	184	15777											
POLE	5426	hgsc.bcm.edu;bcgsc.ca	37	12	133256186	133256186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLE	NM_006231	exon6	c.A475G	p.T159A	CCACAGTGTGGAA	.	78	4	110	0	.	233	C	133256186	T	C	133256186	3	2	127	1	0	0	0	0	1	0	0	0	12196	1696	59	2	6561	2	POLE	12	133256186	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	12604464	133256186	595709	185	15778											
MPHOSPH8	54737	hgsc.bcm.edu;bcgsc.ca	37	13	20237233	20237233	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPHOSPH8	NM_017520	exon9	c.C1986T	p.V662V	AAATGTCCAGCAA	.	73	4	99	0	.	68	T	20237233	C	T	20237233	2	4	127	1	0	0	0	0	0	0	0	1	9727	842	30	3		3	MPHOSPH8	13	20237233	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10		20237233	94932645	186	15779											
NBEA	26960	hgsc.bcm.edu;bcgsc.ca	37	13	36046654	36046654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NBEA	NM_015678	exon41	c.T6566C	p.F2189S	CTGCCTTCAAGAA	.	63	4	100	0	.	144	C	36046654	T	C	36046654	3	2	127	1	0	0	0	0	1	0	0	0	10187	1783	62	2	6728	2	NBEA	13	36046654	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	15809421	36046654	79123224	187	15780											
COG6	57511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	40293426	40293426	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COG6	NM_001145079	exon14	c.C1338T	p.L446L	GACACTCATGTTG	.	151	25	230	1	.	227	T	40293426	C	T	40293426	2	4	127	1	0	0	0	0	0	0	0	1	3662	813	29	3		3	COG6	13	40293426	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	4246772	40293426	74876452	188	15781											
FOXO1	2308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41239792	41239792	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXO1	NM_002015	exon1	c.C558T	p.I186I	CTCGTAGATCTGC	.	182	65	333	1	.	1295	A	41239792	G	A	41239792	2	1	127	1	0	0	0	0	0	0	0	1	6023	932	33	3		3	FOXO1	13	41239792	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	946366	41239792	73930086	189	15782											
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41946891	41946891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAA16	NM_024561	exon17	c.T2080C	p.S694P	CTGCAGTCTGTCA	.	89	4	121	0	.	90	C	41946891	T	C	41946891	3	2	127	1	0	0	0	0	1	0	0	0	10119	1667	58	2	2179	2	NAA16	13	41946891	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	707099	41946891	73222987	190	15783											
VPS36	51028	hgsc.bcm.edu;bcgsc.ca	37	13	53008984	53008984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS36	NM_016075	exon5	c.A385G	p.R129G	ATCTTCTTTGTGT	.	98	4	134	0	.	91	C	53008984	T	C	53008984	3	2	127	1	0	0	0	0	1	0	0	0	17201	1617	56	2	815	2	VPS36	13	53008984	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	11062093	53008984	62160894	191	15784											
PIBF1	10464	hgsc.bcm.edu;bcgsc.ca	37	13	73428292	73428292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIBF1	NM_006346	exon10	c.A1321G	p.R441G	TTAGACAGGTAAG	.	80	4	100	0	.	136	G	73428292	A	G	73428292	3	3	127	1	0	0	0	0	1	0	0	0	11879	202	7	2	1355	2	PIBF1	13	73428292	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	20419308	73428292	41741586	192	15785											
UCHL3	7347	hgsc.bcm.edu;bcgsc.ca	37	13	76135000	76135000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UCHL3	NM_006002	exon3	c.T166C	p.F56L	CTTCTCTTTCCTA	.	105	5	135	0	.	522	C	76135000	T	C	76135000	3	2	127	1	0	0	0	0	1	0	0	0	16918	1609	56	2	176	2	UCHL3	13	76135000	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	2706708	76135000	39034878	193	15786											
DOCK9	23348	hgsc.bcm.edu;bcgsc.ca	37	13	99519792	99519792	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DOCK9	NM_015296	exon31	c.3178-2A>G	.	AGGGTCTGCAGGA	.	38	4	45	0	.	90	C	99519792	T	C	99519792	5	2	127	1	0	0	0	0	0	0	1	0	4694	1594	55	2	3202	2	DOCK9	13	99519792	Splice_Site	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	23384792	99519792	15650086	194	15787											
OR5AU1	390445	hgsc.bcm.edu;bcgsc.ca	37	14	21623682	21623682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR5AU1	NM_001004731	exon1	c.C503A	p.A168D	GCCATGGCAGCGA	.	81	4	80	0	.	68	T	21623682	G	T	21623682	3	4	127	1	0	0	0	0	1	0	0	0	11147	1203	42	3	588	3	OR5AU1	14	21623682	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10		21623682	85725858	195	15788											
HOMEZ	57594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23745570	23745570	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMEZ	NM_020834	exon2	c.T867C	p.S289S	AGAAGAAGAGGTA	.	132	18	138	0	.	22	G	23745570	A	G	23745570	2	3	127	1	0	0	0	0	0	0	0	1	7281	59	3	2		2	HOMEZ	14	23745570	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2121888	23745570	83603970	196	15789											
SLC22A17	51310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23816000	23816000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A17	NM_020372	exon9	c.C1474A	p.L492M	GCAGCAGCATAAT	.	39	13	38	0	.	226	T	23816000	G	T	23816000	3	4	127	1	0	0	0	0	1	0	0	0	14448	962	34	3	146	3	SLC22A17	14	23816000	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	70430	23816000	83533540	197	15790											
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24507078	24507078	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001082488	exon2	c.C255T	p.G85G	GACGGGCACTGTG	.	306	129	415	0	.	.	T	24507078	C	T	24507078	2	4	127	1	0	0	0	0	0	0	0	1	4493	697	25	3		3	DHRS4L1	14	24507078	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	691078	24507078	82842462	198	15791											
HEATR5A	25938	hgsc.bcm.edu;bcgsc.ca	37	14	31819853	31819853	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR5A	NM_015473	exon17	c.T2482C	p.L828L	CATGTAACTGAAC	.	61	4	69	0	.	23	G	31819853	A	G	31819853	2	3	127	1	0	0	0	0	0	0	0	1	7031	40	2	2		2	HEATR5A	14	31819853	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	7312775	31819853	75529687	199	15792											
ISCA2	122961	hgsc.bcm.edu;bcgsc.ca	37	14	74960541	74960541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISCA2	NM_001272007	exon1	c.A64G	p.R22G	TGGCCGAGGGGCA	.	79	5	94	0	.	90	G	74960541	A	G	74960541	3	3	127	1	0	0	0	0	1	0	0	0	7851	295	11	2	66	2	ISCA2	14	74960541	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	43140688	74960541	32388999	200	15793											
KIAA0317	9870	hgsc.bcm.edu;bcgsc.ca	37	14	75130431	75130431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA0317	NM_001039479	exon20	c.A2464G	p.M822V	AGAGCATGCCAAA	.	70	5	71	0	.	525	C	75130431	T	C	75130431	3	2	127	1	0	0	0	0	1	0	0	0	8167	1464	51	2	11	2	KIAA0317	14	75130431	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	169890	75130431	32219109	201	15794											
TGFB3	7043	hgsc.bcm.edu;bcgsc.ca	37	14	76437504	76437504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGFB3	NM_003239	exon3	c.T611C	p.V204A	TCAGTGACATCAA	.	53	4	62	0	.	524	G	76437504	A	G	76437504	3	3	127	1	0	0	0	0	1	0	0	0	15816	275	10	2	647	2	TGFB3	14	76437504	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	1307073	76437504	30912036	202	15795											
VASH1	22846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77237533	77237533	+	Silent	SNP	G	G	A	rs202147705	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VASH1	NM_014909	exon3	c.G399A	p.Q133Q	CCACAGGTACAAT	.	357	98	452	0	.	90	A	77237533	G	A	77237533	2	1	127	1	0	0	0	0	0	0	0	1	17122	1275	44	3		3	VASH1	14	77237533	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	800029	77237533	30112007	203	15796											
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77746806	77746806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon16	c.G1654T	p.G552W	TGTTCCCCTGCAT	.	166	83	256	0	.	91	A	77746806	C	A	77746806	3	1	127	1	0	0	0	0	1	0	0	0	12246	637	22	3	622	3	POMT2	14	77746806	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	509273	77746806	29602734	204	15797	88	2									
POMT2	29954	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77746807	77746807	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon17	c.1654-1G>T	.	GTTCCCCTGCATG	.	159	81	252	2	.	91	A	77746807	C	A	77746807	5	1	127	1	0	0	0	0	0	0	1	0	12246	695	24	3	623	3	POMT2	14	77746807	Splice_Site	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1	77746807	29602733	205	15798	88	2									
CCDC88C	440193	broad.mit.edu;bcgsc.ca	37	14	91739338	91739338	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC88C	NM_001080414	exon30	c.C5718A	p.P1906P	AATGGCGGGGGCT	.	31	4	80	1	.	25	T	91739338	G	T	91739338	2	4	127	1	0	0	0	0	0	0	0	1	2865	1103	39	1		1	CCDC88C	14	91739338	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	13992531	91739338	15610202	206	15799											
ATP8B4	79895	hgsc.bcm.edu;bcgsc.ca	37	15	50190396	50190396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP8B4	NM_024837	exon22	c.T2342C	p.M781T	TTACACATGCAAG	.	150	6	129	0	.	140	G	50190396	A	G	50190396	3	3	127	1	0	0	0	0	1	0	0	0	1197	217	8	2	1264	2	ATP8B4	15	50190396	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10		50190396	52340996	207	15800											
UNC13C	440279	hgsc.bcm.edu;bcgsc.ca	37	15	54305696	54305696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13C	NM_001080534	exon1	c.A596G	p.E199G	ACTCAGAGTTAAG	.	90	4	141	0	.	51	G	54305696	A	G	54305696	3	3	127	1	0	0	0	0	1	0	0	0	16983	304	11	2	598	2	UNC13C	15	54305696	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	4115300	54305696	48225696	208	15801											
NEDD4	4734	hgsc.bcm.edu;bcgsc.ca	37	15	56125247	56125247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NEDD4	NM_198400	exon20	c.G3527A	p.G1176D	GATGTGCCAGTGA	.	82	5	82	0	.	723	T	56125247	C	T	56125247	3	4	127	1	0	0	0	0	1	0	0	0	10310	739	26	3	228	3	NEDD4	15	56125247	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1819551	56125247	46406145	209	15802											
ZNF280D	54816	hgsc.bcm.edu;bcgsc.ca	37	15	56924037	56924037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF280D	NM_017661	exon22	c.A2599G	p.K867E	GATCTTTAATCTG	.	74	4	93	0	.	46	C	56924037	T	C	56924037	3	2	127	1	0	0	0	0	1	0	0	0	17814	1763	61	2	344	2	ZNF280D	15	56924037	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	798790	56924037	45607355	210	15803											
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57754012	57754012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CGNL1	NM_001252335	exon9	c.T2325G	p.D775E	CCATGATCAGGAG	.	89	21	136	0	.	100	G	57754012	T	G	57754012	3	3	127	1	0	0	0	0	1	0	0	0	3304	1432	50	5	2351	5	CGNL1	15	57754012	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	829975	57754012	44777380	211	15804											
LIPC	3990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58840664	58840664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIPC	NM_000236	exon6	c.G944A	p.S315N	GCCTGAGCTGCAA	.	135	64	172	0	.	91	A	58840664	G	A	58840664	3	1	127	1	0	0	0	0	1	0	0	0	8820	971	34	3	966	3	LIPC	15	58840664	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1086652	58840664	43690728	212	15805											
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	15	63915040	63915040	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HERC1	NM_003922	exon74	c.C13662A	p.T4554T	TTCTGCGGTGGCA	.	71	4	77	0	.	666	T	63915040	G	T	63915040	2	4	127	1	0	0	0	0	0	0	0	1	7057	1103	39	1		1	HERC1	15	63915040	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	5074376	63915040	38616352	213	15806											
SPG21	51324	hgsc.bcm.edu;bcgsc.ca	37	15	65261687	65261687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPG21	NM_001127889	exon7	c.G574T	p.G192C	TCTGACCCAAACT	.	94	4	88	0	.	90	A	65261687	C	A	65261687	3	1	127	1	0	0	0	0	1	0	0	0	15042	623	22	3	364	3	SPG21	15	65261687	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1346647	65261687	37269705	214	15807											
MYO9A	4649	hgsc.bcm.edu;bcgsc.ca	37	15	72152137	72152137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO9A	NM_006901	exon34	c.T6092C	p.L2031S	TTGCATACTGAAA	.	53	4	97	0	.	93	G	72152137	A	G	72152137	3	3	127	1	0	0	0	0	1	0	0	0	10084	405	14	2	1590	2	MYO9A	15	72152137	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	6890450	72152137	30379255	215	15808											
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74468160	74468160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISLR	NM_201526	exon2	c.G961A	p.E321K	AAGCTGGAGGAAG	.	36	16	67	0	.	155	A	74468160	G	A	74468160	3	1	127	1	0	0	0	0	1	0	0	0	7858	1175	41	3	963	3	ISLR	15	74468160	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	2316023	74468160	28063232	216	15809											
RCN2	5955	hgsc.bcm.edu;bcgsc.ca	37	15	77241444	77241444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCN2	NM_001271837	exon8	c.G889T	p.G297C	TTGAATGGTGACA	.	74	5	62	0	.	90	T	77241444	G	T	77241444	3	4	127	1	0	0	0	0	1	0	0	0	13180	1348	47	3	861	3	RCN2	15	77241444	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	2773284	77241444	25289948	217	15810											
SH2D7	646892	hgsc.bcm.edu;bcgsc.ca	37	15	78386536	78386536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001101404	exon2	c.T259C	p.S87P	ATCTTGTCCTACA	.	63	4	80	0	.	.	C	78386536	T	C	78386536	3	2	127	1	0	0	0	0	1	0	0	0	14239	1667	58	2	265	2	SH2D7	15	78386536	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1145092	78386536	24144856	218	15811											
ADAMTSL3	57188	hgsc.bcm.edu;bcgsc.ca	37	15	84694002	84694002	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTSL3	NM_207517	exon27	c.T4470C	p.S1490S	CACAAGTGTGTGG	.	54	5	106	0	.	1153	C	84694002	T	C	84694002	2	2	127	1	0	0	0	0	0	0	0	1	276	1693	59	2		2	ADAMTSL3	15	84694002	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	6307466	84694002	17837390	219	15812											
AGBL1	123624	hgsc.bcm.edu;bcgsc.ca	37	15	87097688	87097688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152336	exon20	c.G2776T	p.V926L	CGGGTGGTGGTGT	.	103	5	133	0	.	.	T	87097688	G	T	87097688	3	4	127	1	0	0	0	0	1	0	0	0	375	1261	44	3	2850	3	AGBL1	15	87097688	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	2403686	87097688	15433704	220	15813											
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91769904	91769904	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SV2B	NM_014848	exon3	c.G411A	p.E137E	TGCAGAGAAGGAC	.	80	26	76	0	.	97	A	91769904	G	A	91769904	2	1	127	1	0	0	0	0	0	0	0	1	15415	933	33	3		3	SV2B	15	91769904	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	4672216	91769904	10761488	221	15814											
CHD2	1106	hgsc.bcm.edu;bcgsc.ca	37	15	93522390	93522390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD2	NM_001271	exon22	c.A2753G	p.K918R	TTACAAAGGGGAC	.	71	4	90	0	.	229	G	93522390	A	G	93522390	3	3	127	1	0	0	0	0	1	0	0	0	3325	72	3	2	2839	2	CHD2	15	93522390	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	1752486	93522390	9009002	222	15815											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	364562	364563	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon3	c.999_1000del	p.333_334del	TGAGGGACAGGGT	.	53	23	135	0	.	684	-	364563	AC	-	364562	7	5	127	1	0	1	0	1	0	0	0	0	1236	275	10	0	1624	0	AXIN1	16	364562	Frame_Shift_Del	DEL	AC	TCGA-ES-A2HS-01A-11D-A183-10		364562	89990191	223	15816											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	396448	396448	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon2	c.T578A	p.M193K	TCCTCCATAGTGG	.	114	20	192	0	.	684	T	396448	A	T	396448	3	4	127	1	0	0	0	0	1	0	0	0	1236	217	8	4	2050	4	AXIN1	16	396448	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	31886	396448	89958305	224	15817											
MSLN	10232	hgsc.bcm.edu;bcgsc.ca	37	16	818713	818713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSLN	NM_013404	exon17	c.C1873A	p.L625I	CTGCTCCTAGCCT	.	59	4	149	0	.	91	A	818713	C	A	818713	3	1	127	1	0	0	0	0	1	0	0	0	9881	680	24	3	1935	3	MSLN	16	818713	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	422265	818713	89536040	225	15818											
RRN3	54700	hgsc.bcm.edu;bcgsc.ca	37	16	15168676	15168676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRN3	NM_018427	exon11	c.G901A	p.E301K	GCCGTTCAGGACC	.	71	4	119	0	.	91	T	15168676	C	T	15168676	3	4	127	1	0	0	0	0	1	0	0	0	13684	835	29	3	1086	3	RRN3	16	15168676	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	14349963	15168676	75186077	226	15819											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	18846414	18846414	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG1	NM_015092	exon49	c.G8130A	p.L2710L	TCGCTGCAGGGTC	.	203	116	243	0	.	1160	T	18846414	C	T	18846414	2	4	127	1	0	0	0	0	0	0	0	1	14795	697	25	3		3	SMG1	16	18846414	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	3677738	18846414	71508339	227	15820											
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23707249	23707249	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERN2	NM_033266	exon14	c.C1720T	p.L574L	GGCCCAGCACGTC	.	75	22	96	0	.	322	A	23707249	G	A	23707249	2	1	127	1	0	0	0	0	0	0	0	1	5238	962	34	3		3	ERN2	16	23707249	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	4860835	23707249	66647504	228	15821											
TNRC6A	27327	hgsc.bcm.edu;bcgsc.ca	37	16	24834848	24834848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC6A	NM_014494	exon25	c.C5609A	p.P1870H	CTTCTCCCGGCTG	.	61	4	104	0	.	92	A	24834848	C	A	24834848	3	1	127	1	0	0	0	0	1	0	0	0	16337	623	22	3	5707	3	TNRC6A	16	24834848	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1127599	24834848	65519905	229	15822											
GTF3C1	2975	hgsc.bcm.edu;bcgsc.ca	37	16	27499733	27499733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GTF3C1	NM_001520	exon23	c.A3515G	p.N1172S	CTGCTGTTGCCTA	.	60	4	105	0	.	94	C	27499733	T	C	27499733	3	2	127	1	0	0	0	0	1	0	0	0	6872	1725	60	2	2874	2	GTF3C1	16	27499733	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	2664885	27499733	62855020	230	15823											
SEZ6L2	26470	hgsc.bcm.edu;bcgsc.ca	37	16	29891258	29891258	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEZ6L2	NM_001243332	exon9	c.T1500C	p.P500P	GGGCCCAGGGGGC	.	70	4	95	0	.	92	G	29891258	A	G	29891258	2	3	127	1	0	0	0	0	0	0	0	1	14144	175	7	2		2	SEZ6L2	16	29891258	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2391525	29891258	60463495	231	15824											
ITGAL	3683	hgsc.bcm.edu;bcgsc.ca	37	16	30500452	30500452	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAL	NM_002209	exon10	c.C1056T	p.S352S	CTCCAGCGGCATC	.	100	4	124	0	.	994	T	30500452	C	T	30500452	2	4	127	1	0	0	0	0	0	0	0	1	7886	767	27	1		1	ITGAL	16	30500452	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	609194	30500452	59854301	232	15825											
ITGAX	3687	hgsc.bcm.edu;bcgsc.ca	37	16	31373480	31373480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAX	NM_000887	exon11	c.A1171T	p.I391F	ACCTTCATCAACA	.	86	4	170	0	.	229	T	31373480	A	T	31373480	3	4	127	1	0	0	0	0	1	0	0	0	7889	217	8	4	1213	4	ITGAX	16	31373480	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	873028	31373480	58981273	233	15826											
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51175284	51175284	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SALL1	NM_002968	exon2	c.C849A	p.S283S	TAGCGTGGACAAG	.	69	4	110	0	.	98	T	51175284	G	T	51175284	2	4	127	1	0	0	0	0	0	0	0	1	13810	1335	47	3		3	SALL1	16	51175284	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	19801804	51175284	39179469	234	15827											
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66651253	66651253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CMTM4	NM_178818	exon5	c.A632T	p.Y211F	GTGGAGTAGGAAA	.	287	98	405	1	.	227	A	66651253	T	A	66651253	3	1	127	1	0	0	0	0	1	0	0	0	3585	1638	57	4	76	4	CMTM4	16	66651253	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	15475969	66651253	23703500	235	15828											
AARS	16	hgsc.bcm.edu;bcgsc.ca	37	16	70292100	70292100	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AARS	NM_001605	exon15	c.C2013T	p.C671C	CAGGGGGCAATCC	.	70	4	117	0	.	91	A	70292100	G	A	70292100	2	1	127	1	0	0	0	0	0	0	0	1	19	1195	42	3		3	AARS	16	70292100	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	3640847	70292100	20062653	236	15829											
SMG6	23293	hgsc.bcm.edu;bcgsc.ca	37	17	1964865	1964865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG6	NM_017575	exon19	c.A4181G	p.N1394S	CGCAGGTTCCGGT	.	79	4	100	0	.	228	C	1964865	T	C	1964865	3	2	127	1	0	0	0	0	1	0	0	0	14797	1725	60	2	82	2	SMG6	17	1964865	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		1964865	79230345	237	15830											
PLD2	5338	hgsc.bcm.edu;bcgsc.ca	37	17	4712848	4712848	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLD2	NM_002663	exon7	c.614+2T>C	.	GGACTGTGAGTGT	.	110	5	114	0	.	291	C	4712848	T	C	4712848	5	2	127	1	0	0	0	0	0	0	1	0	12046	1710	59	2	638	2	PLD2	17	4712848	Splice_Site	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	2747983	4712848	76482362	238	15831											
PIGL	9487	hgsc.bcm.edu;bcgsc.ca	37	17	16137378	16137378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIGL	NM_004278	exon2	c.A329G	p.D110G	TTATTGACAACAG	.	54	4	95	0	.	226	G	16137378	A	G	16137378	3	3	127	1	0	0	0	0	1	0	0	0	11891	275	10	2	335	2	PIGL	17	16137378	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	11424530	16137378	65057832	239	15832											
C17orf78	284099	hgsc.bcm.edu;bcgsc.ca	37	17	35736083	35736083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173625	exon3	c.A154G	p.T52A	ACTCACACAGAAA	.	85	4	99	0	.	.	G	35736083	A	G	35736083	3	3	127	1	0	0	0	0	1	0	0	0	1883	159	6	2	164	2	C17orf78	17	35736083	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	19598705	35736083	45459127	240	15833											
GSDMB	55876	hgsc.bcm.edu;bcgsc.ca	37	17	38068744	38068746	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GSDMB	NM_001042471	exon3	c.240_242del	p.80_81del	TCAGCCTTTTGAC	.	218	104	219	0	.	153	-	38068746	TTT	-	38068744	7	5	127	1	0	1	0	1	0	0	0	0	6817	1609	56	0	1044	0	GSDMB	17	38068744	In_Frame_Del	DEL	TTT	TCGA-ES-A2HS-01A-11D-A183-10	2332661	38068744	43126466	241	15834											
TOP2A	7153	hgsc.bcm.edu;bcgsc.ca	37	17	38556308	38556308	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TOP2A	NM_001067	exon24	c.C3012T	p.D1004D	TACGTGGTCAAAA	.	57	4	57	0	.	655	A	38556308	G	A	38556308	2	1	127	1	0	0	0	0	0	0	0	1	16362	1252	44	3		3	TOP2A	17	38556308	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	487564	38556308	42638902	242	15835											
ASB16	92591	hgsc.bcm.edu;bcgsc.ca	37	17	42255627	42255627	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASB16	NM_080863	exon5	c.C1231T	p.L411L	AGGCAGCTGCAGC	.	54	4	77	0	.	227	T	42255627	C	T	42255627	2	4	127	1	0	0	0	0	0	0	0	1	1020	796	28	3		3	ASB16	17	42255627	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	3699319	42255627	38939583	243	15836											
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45006918	45006918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOSR2	NM_001012511	exon2	c.G62A	p.R21H	TGGGACGCCTGGA	.	49	23	70	0	.	92	A	45006918	G	A	45006918	3	1	127	1	0	0	0	0	1	0	0	0	6578	1087	38	1	68	1	GOSR2	17	45006918	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	2751291	45006918	36188292	244	15837											
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48823914	48823914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LUC7L3	NM_006107	exon9	c.G989A	p.R330Q	GAGATCGACGAAG	.	336	179	322	1	.	90	A	48823914	G	A	48823914	3	1	127	1	0	0	0	0	1	0	0	0	9084	1058	37	1	1023	1	LUC7L3	17	48823914	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	3816996	48823914	32371296	245	15838											
NME1	4830	hgsc.bcm.edu;bcgsc.ca	37	17	49237415	49237415	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NME1	NM_198175	exon4	c.C276T	p.Y92Y	GAAATACATGCAC	.	116	5	77	0	.	251	T	49237415	C	T	49237415	2	4	127	1	0	0	0	0	0	0	0	1	10489	489	17	3		3	NME1	17	49237415	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	413501	49237415	31957795	246	15839											
EPX	8288	hgsc.bcm.edu;bcgsc.ca	37	17	56280606	56280606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPX	NM_000502	exon11	c.C1873T	p.P625S	CTTTTGCCGGGGG	.	84	5	120	0	.	92	T	56280606	C	T	56280606	3	4	127	1	0	0	0	0	1	0	0	0	5200	739	26	3	1915	3	EPX	17	56280606	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	7043191	56280606	24914604	247	15840											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71335078	71335078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SDK2	NM_001144952	exon45	c.G6167A	p.G2056E	TCACTTCCCTGGG	.	537	279	565	0	.	24	T	71335078	C	T	71335078	3	4	127	1	0	0	0	0	1	0	0	0	13969	869	30	3	355	3	SDK2	17	71335078	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	15054472	71335078	9860132	248	15841											
ACOX1	51	hgsc.bcm.edu;bcgsc.ca	37	17	73944528	73944528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACOX1	NM_007292	exon13	c.T1739C	p.M580T	TCTGTCATGATGC	.	69	4	53	0	.	91	G	73944528	A	G	73944528	3	3	127	1	0	0	0	0	1	0	0	0	158	217	8	2	251	2	ACOX1	17	73944528	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2609450	73944528	7250682	249	15842											
JMJD6	23210	hgsc.bcm.edu;bcgsc.ca	37	17	74716510	74716510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMJD6	NM_001081461	exon5	c.A1012G	p.I338V	AAGCTATCCCTGT	.	77	4	86	0	.	93	C	74716510	T	C	74716510	3	2	127	1	0	0	0	0	1	0	0	0	7953	1435	50	2	248	2	JMJD6	17	74716510	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	771982	74716510	6478700	250	15843											
PDE6G	5148	hgsc.bcm.edu;bcgsc.ca	37	17	79618688	79618688	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDE6G	NM_002602	exon3	c.A174G	p.E58E	CAGGCCTTCCATT	.	87	4	102	0	.	90	C	79618688	T	C	79618688	2	2	127	1	0	0	0	0	0	0	0	1	11649	1606	56	2		2	PDE6G	17	79618688	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4902178	79618688	1576522	251	15844											
SMCHD1	23347	hgsc.bcm.edu;bcgsc.ca	37	18	2694533	2694533	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMCHD1	NM_015295	exon8	c.T882C	p.D294D	CTCTGATTCTGTT	.	89	4	133	0	.	46	C	2694533	T	C	2694533	2	2	127	1	0	0	0	0	0	0	0	1	14788	1490	52	2		2	SMCHD1	18	2694533	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		2694533	75382715	252	15845											
RALBP1	10928	bcgsc.ca;mdanderson.org	37	18	9535701	9535701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RALBP1	NM_006788	exon10	c.T1734C	p.H578H	AATTCATGAGGAG	.	18	3	29	0	.	522	C	9535701	T	C	9535701	2	2	127	1	0	0	0	0	0	0	0	1	13012	1461	51	2		2	RALBP1	18	9535701	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	6841168	9535701	68541547	253	15846											
PPP4R1	9989	ucsc.edu;bcgsc.ca	37	18	9595031	9595031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP4R1	NM_001042388	exon3	c.A173G	p.E58G	ATGTTCTCACTTG	.	48	4	62	0	.	227	C	9595031	T	C	9595031	3	2	127	1	0	0	0	0	1	0	0	0	12403	1551	54	2	2751	2	PPP4R1	18	9595031	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	59330	9595031	68482217	254	15847											
GNAL	2774	hgsc.bcm.edu;bcgsc.ca	37	18	11881066	11881066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNAL	NM_182978	exon12	c.C1309A	p.R437S	AACATCCGCAGGG	.	62	5	114	0	.	228	A	11881066	C	A	11881066	3	1	127	1	0	0	0	0	1	0	0	0	6507	652	23	1	1504	1	GNAL	18	11881066	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	2286035	11881066	66196182	255	15848											
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20572755	20572755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.C965A	p.P322H	AATTACCTACTCG	.	81	4	130	0	.	659	A	20572755	C	A	20572755	3	1	127	1	0	0	0	0	1	0	0	0	13105	681	24	3	1003	3	RBBP8	18	20572755	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	8691689	20572755	57504493	256	15849											
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20573367	20573367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.A1577G	p.K526R	CTTTGAAGACCAT	.	61	4	123	0	.	659	G	20573367	A	G	20573367	3	3	127	1	0	0	0	0	1	0	0	0	13105	72	3	2	1615	2	RBBP8	18	20573367	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	612	20573367	57503881	257	15850											
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29788190	29788190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MEP1B	NM_005925	exon9	c.C875G	p.P292R	AGGTTCCCAGGGG	.	99	27	154	0	.	92	G	29788190	C	G	29788190	3	3	127	1	0	0	0	0	1	0	0	0	9476	623	22	4	909	4	MEP1B	18	29788190	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	9214823	29788190	48289058	258	15851											
ZNF396	252884	hgsc.bcm.edu;bcgsc.ca	37	18	32953458	32953458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF396	NM_145756	exon3	c.A524G	p.Q175R	GCTCCCTGGAGCT	.	130	6	275	0	.	90	C	32953458	T	C	32953458	3	2	127	1	0	0	0	0	1	0	0	0	17879	1580	55	2	489	2	ZNF396	18	32953458	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	3165268	32953458	45123790	259	15852											
SLC14A2	8170	hgsc.bcm.edu;bcgsc.ca	37	18	43204717	43204717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC14A2	NM_001242692	exon3	c.T88C	p.W30R	CCGAGCTGGCCCT	.	68	5	91	0	.	93	C	43204717	T	C	43204717	3	2	127	1	0	0	0	0	1	0	0	0	14397	1580	55	2	90	2	SLC14A2	18	43204717	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	10251259	43204717	34872531	260	15853											
DSEL	92126	hgsc.bcm.edu;bcgsc.ca	37	18	65178261	65178261	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DSEL	NM_032160	exon2	c.A3615G	p.E1205E	GATGTTTTCAATT	.	120	6	242	0	.	157	C	65178261	T	C	65178261	2	2	127	1	0	0	0	0	0	0	0	1	4775	1838	64	2		2	DSEL	18	65178261	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	21973544	65178261	12898987	261	15854											
APBA3	9546	hgsc.bcm.edu;bcgsc.ca	37	19	3754233	3754233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	APBA3	NM_004886	exon4	c.C722T	p.T241M	ATGCGCGTGCTGG	.	69	4	76	0	.	90	A	3754233	G	A	3754233	3	1	127	1	0	0	0	0	1	0	0	0	758	1145	40	1	1037	1	APBA3	19	3754233	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10		3754233	55374750	262	15855											
FEM1A	55527	hgsc.bcm.edu;bcgsc.ca	37	19	4792908	4792908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FEM1A	NM_018708	exon1	c.T1042C	p.Y348H	CTGGCCTATGACT	.	72	5	81	0	.	90	C	4792908	T	C	4792908	3	2	127	1	0	0	0	0	1	0	0	0	5809	1522	53	2	1044	2	FEM1A	19	4792908	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	1038675	4792908	54336075	263	15856											
ZNF317	57693	hgsc.bcm.edu;bcgsc.ca	37	19	9271853	9271853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF317	NM_020933	exon7	c.T1532C	p.F511S	AGGCCTTCAGGAA	.	70	5	65	0	.	90	C	9271853	T	C	9271853	3	2	127	1	0	0	0	0	1	0	0	0	17832	1783	62	2	1554	2	ZNF317	19	9271853	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4478945	9271853	49857130	264	15857											
OLFM2	93145	hgsc.bcm.edu;bcgsc.ca	37	19	9968053	9968053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OLFM2	NM_058164	exon4	c.C466A	p.L156I	CGGAGAGATTCCT	.	62	4	89	0	.	132	T	9968053	G	T	9968053	3	4	127	1	0	0	0	0	1	0	0	0	10853	942	33	3	910	3	OLFM2	19	9968053	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	696200	9968053	49160930	265	15858											
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14274128	14274128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPHN1	NM_001008701	exon6	c.C500A	p.P167Q	TGCAGCGGGTCCT	.	77	4	134	0	.	523	T	14274128	G	T	14274128	3	4	127	1	0	0	0	0	1	0	0	0	8915	1116	39	1	4000	1	LPHN1	19	14274128	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	4306075	14274128	44854855	266	15859											
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17837556	17837556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP1S	NM_018174	exon5	c.C1363T	p.R455X	TTCCTGCGAGAGC	.	46	10	49	0	.	90	T	17837556	C	T	17837556	4	4	127	1	0	0	0	0	0	1	0	0	9234	760	27	1	1381	1	MAP1S	19	17837556	Nonsense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	3563428	17837556	41291427	267	15860											
SLC5A5	6528	hgsc.bcm.edu;bcgsc.ca	37	19	17988801	17988801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC5A5	NM_000453	exon7	c.T868C	p.F290L	GGCCTGTTCCTGA	.	75	4	82	0	.	93	C	17988801	T	C	17988801	3	2	127	1	0	0	0	0	1	0	0	0	14668	1725	60	2	894	2	SLC5A5	19	17988801	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	151245	17988801	41140182	268	15861											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156027	22156027	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF208	NM_007153	exon4	c.T1809C	p.H603H	ACCAGTATGAATT	.	62	31	63	0	.	7	G	22156027	A	G	22156027	2	3	127	1	0	0	0	0	0	0	0	1	17763	446	16	2		2	ZNF208	19	22156027	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	4167226	22156027	36972956	269	15862											
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23542731	23542731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF91	NM_003430	exon4	c.C3050A	p.T1017N	TCTCCAGTGTGCA	.	88	4	72	0	.	90	T	23542731	G	T	23542731	3	4	127	1	0	0	0	0	1	0	0	0	18197	1029	36	3	529	3	ZNF91	19	23542731	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1386704	23542731	35586252	270	15863											
ZNF302	55900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35173713	35173713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018443	exon3	c.C41G	p.S14C	ACTTCTCTCATGA	.	281	89	296	0	.	.	G	35173713	C	G	35173713	3	3	127	1	0	0	0	0	1	0	0	0	17829	913	32	4	47	4	ZNF302	19	35173713	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	11630982	35173713	23955270	271	15864											
ZBTB32	27033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36206306	36206306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB32	NM_014383	exon2	c.C778A	p.P260T	GGCCAGCCTGCCC	.	34	8	80	0	.	92	A	36206306	C	A	36206306	3	1	127	1	0	0	0	0	1	0	0	0	17532	739	26	3	780	3	ZBTB32	19	36206306	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	1032593	36206306	22922677	272	15865											
ZNF461	92283	hgsc.bcm.edu;bcgsc.ca	37	19	37134755	37134755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_153257	exon5	c.A242G	p.K81R	CAAGTTTTCCATG	.	92	4	96	0	.	.	C	37134755	T	C	37134755	3	2	127	1	0	0	0	0	1	0	0	0	17922	1841	64	2	1457	2	ZNF461	19	37134755	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	928449	37134755	21994228	273	15866											
PSMC4	5704	hgsc.bcm.edu;bcgsc.ca	37	19	40480515	40480515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PSMC4	NM_006503	exon5	c.T554C	p.L185P	TCCCGCTCACGCA	.	62	4	94	0	.	91	C	40480515	T	C	40480515	3	2	127	1	0	0	0	0	1	0	0	0	12689	1551	54	2	572	2	PSMC4	19	40480515	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	3345760	40480515	18648468	274	15867											
AKT2	208	hgsc.bcm.edu;bcgsc.ca	37	19	40761108	40761108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AKT2	NM_001626	exon4	c.A244G	p.T82A	TGACTGTGGTCCA	.	121	6	138	0	.	978	C	40761108	T	C	40761108	3	2	127	1	0	0	0	0	1	0	0	0	480	1696	59	2	1245	2	AKT2	19	40761108	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	280593	40761108	18367875	275	15868											
IRGC	56269	hgsc.bcm.edu;bcgsc.ca	37	19	44223753	44223753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRGC	NM_019612	exon2	c.C1043T	p.S348F	TCTATTCCCAGTC	.	63	4	93	0	.	70	T	44223753	C	T	44223753	3	4	127	1	0	0	0	0	1	0	0	0	7838	855	30	3	1045	3	IRGC	19	44223753	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	3462645	44223753	14905230	276	15869											
ZNF284	342909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44590982	44590982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001037813	exon5	c.G1351A	p.G451R	CACACGGGAGAGA	.	154	52	168	0	.	.	A	44590982	G	A	44590982	3	1	127	1	0	0	0	0	1	0	0	0	17818	1233	43	3	1365	3	ZNF284	19	44590982	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	367229	44590982	14538001	277	15870											
TNNI3	7137	broad.mit.edu;bcgsc.ca	37	19	55663250	55663250	+	Silent	SNP	G	G	A	rs200085986		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNNI3	.	.	.	.	TGCATCGATGTTC	.	227	11	232	0	.	92	A	55663250	G	A	55663250	2	1	127	1	0	0	0	0	0	0	0	1	16325	1048	37	1		1	TNNI3	19	55663250	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	11072268	55663250	3465733	278	15871											
ZNF304	57343	hgsc.bcm.edu;bcgsc.ca	37	19	57867978	57867978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF304	NM_020657	exon3	c.G741T	p.E247D	TGCTGAGGTGAGA	.	94	4	92	0	.	91	T	57867978	G	T	57867978	3	4	127	1	0	0	0	0	1	0	0	0	17830	991	35	3	751	3	ZNF304	19	57867978	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	2204728	57867978	1261005	279	15872											
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58982592	58982592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF324	NM_014347	exon4	c.G733T	p.E245X	TGGGACGAGCTGG	.	180	52	170	0	.	90	T	58982592	G	T	58982592	4	4	127	1	0	0	0	0	0	1	0	0	17841	1059	37	1	743	1	ZNF324	19	58982592	Nonsense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	1114614	58982592	146391	280	15873											
TGM3	7053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2290970	2290970	+	Missense_Mutation	SNP	C	C	T	rs139117716		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGM3	NM_003245	exon3	c.C328T	p.R110W	ATAGGACGGTACA	.	131	51	143	0	C|1.000;T|0.000	139	T	2290970	C	T	2290970	3	4	127	1	0	0	0	0	1	0	0	0	15828	527	19	1	338	1	TGM3	20	2290970	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10		2290970	60734550	281	15874											
PCSK2	5126	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	17410143	17410143	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCSK2	NM_002594	exon7	c.A684T	p.G228G	AGTTGGAGTAGCA	.	79	32	81	0	.	157	T	17410143	A	T	17410143	2	4	127	1	0	0	0	0	0	0	0	1	11601	291	11	4		4	PCSK2	20	17410143	Silent	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	15119173	17410143	45615377	282	15875											
RRBP1	6238	hgsc.bcm.edu;bcgsc.ca	37	20	17596120	17596120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRBP1	NM_004587	exon23	c.G2707T	p.G903C	GGGGGCCGGCTGT	.	55	4	76	0	.	92	A	17596120	C	A	17596120	3	1	127	1	0	0	0	0	1	0	0	0	13678	652	23	1	238	1	RRBP1	20	17596120	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	185977	17596120	45429400	283	15876											
GGTLC1	92086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	23967085	23967085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GGTLC1	NM_178311	exon2	c.C164T	p.T55I	TTGATGGTGCTGG	.	54	22	53	0	.	23	A	23967085	G	A	23967085	3	1	127	1	0	0	0	0	1	0	0	0	6365	1261	44	3	533	3	GGTLC1	20	23967085	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	6370965	23967085	39058435	284	15877											
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	56228121	56228121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PMEPA1	NM_020182	exon3	c.G286T	p.E96X	TGCTCTCCGAGGG	.	109	35	83	0	.	227	A	56228121	C	A	56228121	4	1	127	1	0	0	0	0	0	1	0	0	12132	864	30	3	585	3	PMEPA1	20	56228121	Nonsense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	32261036	56228121	6797399	285	15878											
ZNF512B	57473	bcgsc.ca;mdanderson.org	37	20	62594498	62594498	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF512B	NM_020713	exon12	c.C1918A	p.R640R	TGGATCGGTACGT	.	20	3	35	0	.	90	T	62594498	G	T	62594498	2	4	127	1	0	0	0	0	0	0	0	1	17954	1124	39	1		1	ZNF512B	20	62594498	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	6366377	62594498	431022	286	15879											
UPB1	51733	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	24896100	24896100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UPB1	NM_016327	exon2	c.T130C	p.F44L	GAAGCTTTCGAAG	.	36	4	32	0	.	92	C	24896100	T	C	24896100	3	2	127	1	0	0	0	0	1	0	0	0	16999	1841	64	2	136	2	UPB1	22	24896100	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10		24896100	26408466	287	15880											
THOC5	8563	hgsc.bcm.edu;bcgsc.ca	37	22	29939435	29939435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THOC5	NM_001002878	exon5	c.A337G	p.R113G	GATCTCTTCCTTT	.	182	8	109	0	.	585	C	29939435	T	C	29939435	3	2	127	1	0	0	0	0	1	0	0	0	15865	1617	56	2	1782	2	THOC5	22	29939435	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	5043335	29939435	21365131	288	15881											
MID1	4281	hgsc.bcm.edu;bcgsc.ca	37	X	10437803	10437803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MID1	NM_001193278	exon7	c.G1372A	p.D458N	ACTCATCATCGGA	.	85	4	89	0	.	229	T	10437803	C	T	10437803	3	4	127	1	0	0	0	0	1	0	0	0	9576	826	29	3	800	3	MID1	23	10437803	Missense_Mutation	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10		10437803	144832757	289	15882											
PPEF1	5475	hgsc.bcm.edu;bcgsc.ca	37	X	18797263	18797263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPEF1	NM_152226	exon10	c.G694T	p.G232W	AACAGAGGGAACC	.	91	4	84	0	.	226	T	18797263	G	T	18797263	3	4	127	1	0	0	0	0	1	0	0	0	12307	1000	35	3	720	3	PPEF1	23	18797263	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	8359460	18797263	136473297	290	15883											
SMPX	23676	hgsc.bcm.edu;bcgsc.ca	37	X	21761892	21761892	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMPX	NM_014332	exon3	c.A108G	p.K36K	ACATTCTTTTCTT	.	68	4	60	0	.	130	C	21761892	T	C	21761892	2	2	127	1	0	0	0	0	0	0	0	1	14810	1606	56	2		2	SMPX	23	21761892	Silent	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	2964629	21761892	133508668	291	15884											
PCYT1B	9468	hgsc.bcm.edu;bcgsc.ca	37	X	24597452	24597452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCYT1B	NM_001163265	exon6	c.T689C	p.L230P	ACATTCAGTTCCT	.	122	5	185	0	.	130	G	24597452	A	G	24597452	3	3	127	1	0	0	0	0	1	0	0	0	11611	188	7	2	469	2	PCYT1B	23	24597452	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	2835560	24597452	130673108	292	15885											
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32328324	32328324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DMD	NM_004006	exon42	c.T5992C	p.S1998P	AAGTAGAAGGCAC	.	140	6	223	0	.	265	G	32328324	A	G	32328324	3	3	127	1	0	0	0	0	1	0	0	0	4580	246	9	2	5365	2	DMD	23	32328324	Missense_Mutation	SNP	A	TCGA-ES-A2HS-01A-11D-A183-10	7730872	32328324	122942236	293	15886											
PRRG1	5638	hgsc.bcm.edu;bcgsc.ca	37	X	37312753	37312753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRRG1	NM_001173490	exon4	c.T536C	p.V179A	GCCAAGTGAACCT	.	55	4	66	0	.	194	C	37312753	T	C	37312753	3	2	127	1	0	0	0	0	1	0	0	0	12605	1696	59	2	628	2	PRRG1	23	37312753	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	4984429	37312753	117957807	294	15887											
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	X	39913172	39913172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCOR	NM_001123385	exon14	c.C4943A	p.P1648Q	TAACACGGTAAGA	.	86	4	135	0	.	229	T	39913172	G	T	39913172	3	4	127	1	0	0	0	0	1	0	0	0	1386	1116	39	1	332	1	BCOR	23	39913172	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	2600419	39913172	115357388	295	15888											
MED14	9282	hgsc.bcm.edu;bcgsc.ca	37	X	40522223	40522223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED14	NM_004229	exon26	c.C3638T	p.S1213L	ATGACTGATCCAA	.	95	4	115	0	.	289	A	40522223	G	A	40522223	3	1	127	1	0	0	0	0	1	0	0	0	9432	1294	45	3	750	3	MED14	23	40522223	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	609051	40522223	114748337	296	15889											
RBM10	8241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	47041174	47041185	+	In_Frame_Del	DEL	GCTCAAATCTGA	GCTCAAATCTGA	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	GCTCAAATCTGA	GCTCAAATCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.1797_1808del	p.599_603del	CGCTGTGCTCAAA	.	31	18	111	0	.	626	-	47041185	GCTCAAATCTGA	-	47041174	7	5	127	1	0	1	0	1	0	0	0	0	13111	1306	46	0	1656	0	RBM10	23	47041174	In_Frame_Del	DEL	GCTCAAATCTGA	TCGA-ES-A2HS-01A-11D-A183-10	6518951	47041174	108229386	297	15890											
HUWE1	10075	hgsc.bcm.edu;bcgsc.ca	37	X	53579842	53579842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HUWE1	NM_031407	exon62	c.C8507A	p.P2836Q	CTCTCTGGGGAAA	.	83	4	115	0	.	280	T	53579842	G	T	53579842	3	4	127	1	0	0	0	0	1	0	0	0	7461	1348	47	3	4709	3	HUWE1	23	53579842	Missense_Mutation	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	6538668	53579842	101690718	298	15891											
LAS1L	81887	hgsc.bcm.edu;bcgsc.ca	37	X	64744928	64744928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAS1L	NM_031206	exon8	c.A959G	p.E320G	ACAGCCTCCCTGG	.	65	4	54	0	.	196	C	64744928	T	C	64744928	3	2	127	1	0	0	0	0	1	0	0	0	8636	1551	54	2	1273	2	LAS1L	23	64744928	Missense_Mutation	SNP	T	TCGA-ES-A2HS-01A-11D-A183-10	11165086	64744928	90525632	299	15892											
TBX22	50945	hgsc.bcm.edu;bcgsc.ca	37	X	79282236	79282236	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBX22	NM_016954	exon5	c.C667A	p.R223R	AAACCCCGAGTGC	.	93	4	83	0	.	628	A	79282236	C	A	79282236	2	1	127	1	0	0	0	0	0	0	0	1	15655	644	23	1		1	TBX22	23	79282236	Silent	SNP	C	TCGA-ES-A2HS-01A-11D-A183-10	14537308	79282236	75988324	300	15893											
SLC9A6	10479	hgsc.bcm.edu;bcgsc.ca	37	X	135067790	135067790	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC9A6	NM_006359	exon1	c.G129A	p.S43S	GGCTTCGGACGGC	.	66	4	63	0	.	131	A	135067790	G	A	135067790	2	1	127	1	0	0	0	0	0	0	0	1	14718	1103	39	1		1	SLC9A6	23	135067790	Silent	SNP	G	TCGA-ES-A2HS-01A-11D-A183-10	55785554	135067790	20202770	301	15894											
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2288951	2288951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MORN1	NM_024848	exon10	c.A956G	p.D319G	GGCACGTCGGCTT	.	174	38	253	0	.	92	C	2288951	T	C	2288951	3	2	128	1	0	0	0	0	1	0	0	0	9708	1667	58	2	557	2	MORN1	1	2288951	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10		2288951	246961670	1	15895											
TMEM201	199953	hgsc.bcm.edu;bcgsc.ca	37	1	9669927	9669927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM201	NM_001130924	exon8	c.C1423T	p.P475S	AGCCGCCCACCAT	.	80	4	133	0	.	68	T	9669927	C	T	9669927	3	4	128	1	0	0	0	0	1	0	0	0	16123	623	22	3	1472	3	TMEM201	1	9669927	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	7380976	9669927	239580694	2	15896											
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11009710	11009710	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf127	NM_001170754	exon11	c.C1261T	p.L421L	GGTGCAGGAGGTC	.	132	26	133	0	.	91	A	11009710	G	A	11009710	2	1	128	1	0	0	0	0	0	0	0	1	1994	991	35	3		3	C1orf127	1	11009710	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1339783	11009710	238240911	3	15897											
MTHFR	4524	hgsc.bcm.edu;bcgsc.ca	37	1	11854524	11854524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTHFR	NM_005957	exon8	c.C1238T	p.P413L	TCCTTGGGGGACT	.	125	5	159	0	.	90	A	11854524	G	A	11854524	3	1	128	1	0	0	0	0	1	0	0	0	9931	1232	43	3	752	3	MTHFR	1	11854524	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	844814	11854524	237396097	4	15898											
SPEN	23013	hgsc.bcm.edu;bcgsc.ca	37	1	16257506	16257506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPEN	NM_015001	exon11	c.A4771G	p.T1591A	GAGCTCACACGGA	.	68	4	88	0	.	298	G	16257506	A	G	16257506	3	3	128	1	0	0	0	0	1	0	0	0	15037	159	6	2	4813	2	SPEN	1	16257506	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4402982	16257506	232993115	5	15899											
OTUD3	23252	hgsc.bcm.edu;bcgsc.ca	37	1	20224100	20224100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_015207	exon4	c.A551G	p.D184G	ACTACGACAGTGT	.	75	4	89	0	.	.	G	20224100	A	G	20224100	3	3	128	1	0	0	0	0	1	0	0	0	11313	275	10	2	565	2	OTUD3	1	20224100	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	3966594	20224100	229026521	6	15900											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27094372	27094372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARID1A	NM_006015	exon11	c.A3080G	p.Y1027C	ACCGTTATCTGGC	.	223	62	348	0	.	584	G	27094372	A	G	27094372	3	3	128	1	0	0	0	0	1	0	0	0	913	449	16	2	3122	2	ARID1A	1	27094372	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	6870272	27094372	222156249	7	15901											
ZSCAN20	7579	hgsc.bcm.edu;bcgsc.ca	37	1	33955141	33955141	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSCAN20	NM_145238	exon5	c.T705C	p.H235H	CAAACATGCTGAG	.	58	4	82	0	.	93	C	33955141	T	C	33955141	2	2	128	1	0	0	0	0	0	0	0	1	18229	1461	51	2		2	ZSCAN20	1	33955141	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	6860769	33955141	215295480	8	15902											
ZMYM4	9202	hgsc.bcm.edu;bcgsc.ca	37	1	35846860	35846860	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZMYM4	NM_005095	exon8	c.A1182G	p.K394K	TTTTAGAGACATT	.	82	4	89	0	.	291	G	35846860	A	G	35846860	2	3	128	1	0	0	0	0	0	0	0	1	17699	318	11	2		2	ZMYM4	1	35846860	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1891719	35846860	213403761	9	15903											
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39818713	39818713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MACF1	NM_012090	exon40	c.A5048G	p.K1683R	ACAAGAAGAAGAT	.	80	4	128	0	.	165	G	39818713	A	G	39818713	3	3	128	1	0	0	0	0	1	0	0	0	9144	72	3	2	11353	2	MACF1	1	39818713	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	3971853	39818713	209431908	10	15904											
HIVEP3	59269	hgsc.bcm.edu;bcgsc.ca	37	1	42046720	42046720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP3	NM_024503	exon4	c.T3749C	p.L1250P	CCAGGGAGCTGAA	.	70	4	102	0	.	157	G	42046720	A	G	42046720	3	3	128	1	0	0	0	0	1	0	0	0	7188	304	11	2	3495	2	HIVEP3	1	42046720	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2228007	42046720	207203901	11	15905											
FOXJ3	22887	hgsc.bcm.edu;bcgsc.ca	37	1	42730811	42730811	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FOXJ3	NM_001198851	exon6	c.C419G	p.P140R	GATCGAGGCACTT	.	80	4	85	0	.	228	C	42730811	G	C	42730811	3	2	128	1	0	0	0	0	1	0	0	0	6013	1000	35	4	1489	4	FOXJ3	1	42730811	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	684091	42730811	206519810	12	15906											
MUTYH	4595	hgsc.bcm.edu;bcgsc.ca	37	1	45800076	45800076	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUTYH	NM_012222	exon2	c.T144C	p.P48P	GGCAGAAGGCTTG	.	80	4	109	0	.	1083	G	45800076	A	G	45800076	2	3	128	1	0	0	0	0	0	0	0	1	9993	59	3	2		2	MUTYH	1	45800076	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	3069265	45800076	203450545	13	15907											
LRRC7	57554	hgsc.bcm.edu;bcgsc.ca	37	1	70460299	70460299	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC7	NM_020794	exon9	c.A873G	p.L291L	AATGCTACCCAAT	.	70	4	109	0	.	163	G	70460299	A	G	70460299	2	3	128	1	0	0	0	0	0	0	0	1	9020	378	14	2		2	LRRC7	1	70460299	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	24660223	70460299	178790322	14	15908											
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	75602350	75602350	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LHX8	NM_001001933	exon3	c.C81T	p.R27R	GACTCGCAAAGGC	.	93	20	163	0	.	93	T	75602350	C	T	75602350	2	4	128	1	0	0	0	0	0	0	0	1	8776	697	25	3		3	LHX8	1	75602350	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	5142051	75602350	173648271	15	15909											
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85431253	85431253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCOLN2	NM_153259	exon2	c.G216C	p.K72N	GACTATCTTCAAA	.	127	23	186	0	.	94	G	85431253	C	G	85431253	3	3	128	1	0	0	0	0	1	0	0	0	9396	912	32	4	1536	4	MCOLN2	1	85431253	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	9828903	85431253	163819368	16	15910											
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94342288	94342288	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_014597	exon2	c.A1203G	p.E401E	GGACTCTTCTTCA	.	547	135	850	0	.	.	C	94342288	T	C	94342288	2	2	128	1	0	0	0	0	0	0	0	1	4682	1606	56	2		2	DNTTIP2	1	94342288	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	8911035	94342288	154908333	17	15911											
SARS	6301	ucsc.edu;bcgsc.ca	37	1	109778018	109778018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SARS	NM_006513	exon7	c.A934G	p.T312A	CGTGACACCCGTG	.	39	5	35	0	.	90	G	109778018	A	G	109778018	3	3	128	1	0	0	0	0	1	0	0	0	13844	159	6	2	960	2	SARS	1	109778018	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	15435730	109778018	139472603	18	15912											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117156433	117156433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF3	NM_001542	exon4	c.G786T	p.M262I	TCGGGTCATAGCA	.	135	32	180	0	.	92	A	117156433	C	A	117156433	3	1	128	1	0	0	0	0	1	0	0	0	7601	826	29	3	2894	3	IGSF3	1	117156433	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	7378415	117156433	132094188	19	15913											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152192435	152192435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HRNR	NM_001009931	exon3	c.G1670C	p.S557T	CCATAGCTGGAAG	.	291	27	255	0	.	93	G	152192435	C	G	152192435	3	3	128	1	0	0	0	0	1	0	0	0	7359	797	28	4	6886	4	HRNR	1	152192435	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	35036002	152192435	97058186	20	15914											
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157497528	157497528	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FCRL5	NM_031281	exon9	c.C1839T	p.P613P	TCCAGAGGGGGCT	.	218	140	222	0	.	156	A	157497528	G	A	157497528	2	1	128	1	0	0	0	0	0	0	0	1	5798	987	35	3		3	FCRL5	1	157497528	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	5305093	157497528	91753093	21	15915											
CFH	3075	broad.mit.edu;mdanderson.org	37	1	196715034	196715034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CFH	NM_000186	exon21	c.C3398A	p.S1133X	CTTCATCAGTTGA	.	919	112	709	1	.	566	A	196715034	C	A	196715034	4	1	128	1	0	0	0	0	0	1	0	0	3283	838	29	3	3498	3	CFH	1	196715034	Nonsense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	39217506	196715034	52535587	22	15916											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237666628	237666628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RYR2	NM_001035	exon22	c.A2436T	p.K812N	ATTCAAATTTCTT	.	204	31	175	0	.	158	T	237666628	A	T	237666628	3	4	128	1	0	0	0	0	1	0	0	0	13769	98	4	4	2522	4	RYR2	1	237666628	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	40951594	237666628	11583993	23	15917											
GREB1	9687	hgsc.bcm.edu;bcgsc.ca	37	2	11770126	11770126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GREB1	NM_014668	exon26	c.A4502G	p.E1501G	TAGGAGAGGAGAT	.	116	7	206	0	.	91	G	11770126	A	G	11770126	3	3	128	1	0	0	0	0	1	0	0	0	6760	304	11	2	4708	2	GREB1	2	11770126	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		11770126	231429247	24	15918											
NBAS	51594	hgsc.bcm.edu;bcgsc.ca	37	2	15613387	15613387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NBAS	NM_015909	exon16	c.A1684G	p.R562G	ACTTCCTCCACTG	.	90	5	145	0	.	94	C	15613387	T	C	15613387	3	2	128	1	0	0	0	0	1	0	0	0	10186	1550	54	2	5579	2	NBAS	2	15613387	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	3843261	15613387	227585986	25	15919											
CRIM1	51232	hgsc.bcm.edu;bcgsc.ca	37	2	36771541	36771541	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CRIM1	NM_016441	exon15	c.C2646A	p.T882T	ACCAACCAATATA	.	90	5	119	0	.	118	A	36771541	C	A	36771541	2	1	128	1	0	0	0	0	0	0	0	1	3873	581	21	3		3	CRIM1	2	36771541	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	21158154	36771541	206427832	26	15920											
HEATR5B	54497	hgsc.bcm.edu;bcgsc.ca	37	2	37227915	37227915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR5B	NM_019024	exon33	c.A5359G	p.R1787G	ATATTCTTGCAAT	.	100	4	174	0	.	142	C	37227915	T	C	37227915	3	2	128	1	0	0	0	0	1	0	0	0	7032	1617	56	2	872	2	HEATR5B	2	37227915	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	456374	37227915	205971458	27	15921											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39042772	39042772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHX57	NM_198963	exon20	c.T3497A	p.F1166Y	TCCGTGAATTGTC	.	95	13	159	0	.	228	T	39042772	A	T	39042772	3	4	128	1	0	0	0	0	1	0	0	0	4513	246	9	4	683	4	DHX57	2	39042772	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1814857	39042772	204156601	28	15922											
PSME4	23198	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54101524	54101524	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSME4	NM_014614	exon43	c.A5052G	p.K1684K	GATATCTTTAACT	.	180	46	251	1	.	275	C	54101524	T	C	54101524	2	2	128	1	0	0	0	0	0	0	0	1	12709	1606	56	2		2	PSME4	2	54101524	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	15058752	54101524	189097849	29	15923											
SMYD5	10322	hgsc.bcm.edu;bcgsc.ca	37	2	73446019	73446019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMYD5	NM_006062	exon2	c.C127T	p.R43W	CTCATCCGGAAGG	.	124	5	224	0	.	226	T	73446019	C	T	73446019	3	4	128	1	0	0	0	0	1	0	0	0	14825	643	23	1	133	1	SMYD5	2	73446019	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	19344495	73446019	169753354	30	15924											
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74761507	74761507	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LOXL3	NM_032603	exon11	c.T1875C	p.N625N	GGTGCCATTTGGG	.	287	64	435	0	.	226	G	74761507	A	G	74761507	2	3	128	1	0	0	0	0	0	0	0	1	8901	214	8	2		2	LOXL3	2	74761507	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1315488	74761507	168437866	31	15925											
DUSP2	1844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96809608	96809608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DUSP2	NM_004418	exon4	c.T899G	p.F300C	CCCATGAAACTGA	.	179	45	243	1	.	658	C	96809608	A	C	96809608	3	2	128	1	0	0	0	0	1	0	0	0	4819	246	9	5	49	5	DUSP2	2	96809608	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	22048101	96809608	146389765	32	15926											
COX5B	1329	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	98262581	98262581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COX5B	NM_001862	exon1	c.C32T	p.T11M	CTGGAACGCTGGC	.	44	4	51	0	.	226	T	98262581	C	T	98262581	3	4	128	1	0	0	0	0	1	0	0	0	3773	536	19	1	34	1	COX5B	2	98262581	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	1452973	98262581	144936792	33	15927											
IL1R1	3554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102791973	102791973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL1R1	NM_000877	exon10	c.T1171C	p.Y391H	ATACTGTATCCAA	.	692	211	972	2	.	523	C	102791973	T	C	102791973	3	2	128	1	0	0	0	0	1	0	0	0	7658	1638	57	2	1205	2	IL1R1	2	102791973	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	4529392	102791973	140407400	34	15928											
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110926056	110926056	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NPHP1	NM_207181	exon6	c.A597G	p.E199E	AAGACCTTCATTT	.	68	20	119	0	.	92	C	110926056	T	C	110926056	2	2	128	1	0	0	0	0	0	0	0	1	10579	1606	56	2		2	NPHP1	2	110926056	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	8134083	110926056	132273317	35	15929											
GPR148	344561	hgsc.bcm.edu;bcgsc.ca	37	2	131487678	131487678	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR148	NM_207364	exon1	c.C954T	p.Y318Y	CACATACCTGTAC	.	81	5	91	0	.	91	T	131487678	C	T	131487678	2	4	128	1	0	0	0	0	0	0	0	1	6653	518	18	3		3	GPR148	2	131487678	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	20561622	131487678	111711695	36	15930											
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160242972	160242972	+	Silent	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2B	NM_013450	exon22	c.T3363G	p.L1121L	CTCTTGAAGAACA	.	153	34	255	0	.	94	C	160242972	A	C	160242972	2	2	128	1	0	0	0	0	0	0	0	1	1332	233	9	5		5	BAZ2B	2	160242972	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	28755294	160242972	82956401	37	15931											
RBMS1	5937	hgsc.bcm.edu;bcgsc.ca	37	2	161133886	161133886	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBMS1	NM_016836	exon12	c.T1071C	p.P357P	CGTTGCAGGCATG	.	95	6	146	0	.	90	G	161133886	A	G	161133886	2	3	128	1	0	0	0	0	0	0	0	1	13148	175	7	2		2	RBMS1	2	161133886	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	890914	161133886	82065487	38	15932											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170136002	170136002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRP2	NM_004525	exon12	c.A1445G	p.Y482C	ACTAGATAGATTT	.	144	45	201	0	.	175	C	170136002	T	C	170136002	3	2	128	1	0	0	0	0	1	0	0	0	8956	1406	49	2	12794	2	LRP2	2	170136002	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	9002116	170136002	73063371	39	15933											
UBR3	130507	hgsc.bcm.edu;bcgsc.ca	37	2	170897404	170897404	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UBR3	NM_172070	exon32	c.A4569G	p.E1523E	ATATGAAGAACAA	.	93	4	151	0	.	68	G	170897404	A	G	170897404	2	3	128	1	0	0	0	0	0	0	0	1	16900	69	3	2		2	UBR3	2	170897404	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	761402	170897404	72301969	40	15934											
SCRN3	79634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175269041	175269041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCRN3	NM_024583	exon5	c.A752C	p.K251T	AGCACAAAGGTAA	.	76	21	107	0	.	91	C	175269041	A	C	175269041	3	2	128	1	0	0	0	0	1	0	0	0	13940	14	1	5	766	5	SCRN3	2	175269041	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4371637	175269041	67930332	41	15935											
EVX2	344191	hgsc.bcm.edu;bcgsc.ca	37	2	176948503	176948503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVX2	NM_001080458	exon1	c.T2C	p.M1T	TCCATCATCTCAG	.	83	4	179	0	.	70	G	176948503	A	G	176948503	3	3	128	1	0	0	0	0	1	0	0	0	5295	217	8	2	1438	2	EVX2	2	176948503	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1679462	176948503	66250870	42	15936											
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179393915	179393915	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon360	c.T106563C	p.S35521S	TTGTGTAGAGACT	.	63	4	99	0	.	636	G	179393915	A	G	179393915	2	3	128	1	0	0	0	0	0	0	0	1	16732	407	15	2		2	TTN	2	179393915	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2445412	179393915	63805458	43	15937											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179396537	179396537	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon358	c.T104805C	p.P34935P	TGTGAAAGGCTGC	.	144	43	242	0	.	636	G	179396537	A	G	179396537	2	3	128	1	0	0	0	0	0	0	0	1	16732	59	3	2		2	TTN	2	179396537	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2622	179396537	63802836	44	15938											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179458397	179458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon298	c.C58630A	p.L19544I	CAAGTAGTTTAGA	.	201	56	269	0	.	636	T	179458397	G	T	179458397	3	4	128	1	0	0	0	0	1	0	0	0	16732	1020	36	3	49609	3	TTN	2	179458397	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	61860	179458397	63740976	45	15939											
COL5A2	1290	hgsc.bcm.edu;bcgsc.ca	37	2	189950498	189950498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL5A2	NM_000393	exon10	c.G691A	p.G231S	CACCACCCTACAG	.	55	4	56	0	.	92	T	189950498	C	T	189950498	3	4	128	1	0	0	0	0	1	0	0	0	3697	637	22	3	3988	3	COL5A2	2	189950498	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	10492101	189950498	53248875	46	15940											
INO80D	54891	hgsc.bcm.edu;bcgsc.ca	37	2	206893049	206893049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INO80D	NM_017759	exon6	c.G1084A	p.D362N	CATCATCATCATC	.	59	4	61	0	.	91	T	206893049	C	T	206893049	3	4	128	1	0	0	0	0	1	0	0	0	7749	826	29	3	2023	3	INO80D	2	206893049	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	16942551	206893049	36306324	47	15941											
ABCA12	26154	hgsc.bcm.edu;bcgsc.ca	37	2	215807647	215807647	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA12	NM_015657	exon43	c.6482+2T>C	.	TTCTTCACCTGCT	.	86	4	114	0	.	99	G	215807647	A	G	215807647	5	3	128	1	0	0	0	0	0	0	1	0	30	173	6	2	365	2	ABCA12	2	215807647	Splice_Site	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	8914598	215807647	27391726	48	15942											
SLC11A1	6556	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	219251389	219251389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC11A1	NM_000578	exon5	c.A425G	p.E142G	CCATCGAGCTAGC	.	24	4	43	0	.	93	G	219251389	A	G	219251389	3	3	128	1	0	0	0	0	1	0	0	0	14380	304	11	2	443	2	SLC11A1	2	219251389	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	3443742	219251389	23947984	49	15943											
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219674345	219674345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP27A1	NM_000784	exon2	c.G301A	p.G101R	TACTTAGGGCCTC	.	75	20	70	0	.	91	A	219674345	G	A	219674345	3	1	128	1	0	0	0	0	1	0	0	0	4158	1000	35	3	307	3	CYP27A1	2	219674345	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	422956	219674345	23525028	50	15944											
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	36875346	36875346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRANK1	NM_014831	exon21	c.T5596C	p.F1866L	AGTAAAACTGACT	.	110	5	189	0	.	24	G	36875346	A	G	36875346	3	3	128	1	0	0	0	0	1	0	0	0	16451	43	2	2	3193	2	TRANK1	3	36875346	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		36875346	161147084	51	15945											
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39184689	39184689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSRNP1	NM_033027	exon5	c.T1627C	p.S543P	GTGGAGACAGGCC	.	77	4	130	0	.	230	G	39184689	A	G	39184689	3	3	128	1	0	0	0	0	1	0	0	0	3963	275	10	2	146	2	CSRNP1	3	39184689	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2309343	39184689	158837741	52	15946											
MOBP	4336	hgsc.bcm.edu;bcgsc.ca	37	3	39554906	39554906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MOBP	NM_182935	exon4	c.A239G	p.K80R	CAAAGAAGAAGTG	.	69	4	134	0	.	515	G	39554906	A	G	39554906	3	3	128	1	0	0	0	0	1	0	0	0	9688	72	3	2	245	2	MOBP	3	39554906	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	370217	39554906	158467524	53	15947											
VPRBP	9730	hgsc.bcm.edu;bcgsc.ca	37	3	51456190	51456190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPRBP	NM_014703	exon15	c.A3218G	p.Q1073R	TCCTCCTGTCCAC	.	74	4	125	0	.	92	C	51456190	T	C	51456190	3	2	128	1	0	0	0	0	1	0	0	0	17182	1580	55	2	1186	2	VPRBP	3	51456190	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	11901284	51456190	146566240	54	15948											
WDR82	80335	hgsc.bcm.edu;bcgsc.ca	37	3	52293863	52293863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR82	NM_025222	exon6	c.A569G	p.Q190R	TCATACTGCATCT	.	35	5	47	0	.	226	C	52293863	T	C	52293863	3	2	128	1	0	0	0	0	1	0	0	0	17328	1580	55	2	388	2	WDR82	3	52293863	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	837673	52293863	145728567	55	15949											
NEK4	6787	hgsc.bcm.edu;bcgsc.ca	37	3	52800369	52800369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK4	NM_003157	exon3	c.T383C	p.L128P	CGATGAAGGATGT	.	97	4	117	0	.	358	G	52800369	A	G	52800369	3	3	128	1	0	0	0	0	1	0	0	0	10326	72	3	2	2198	2	NEK4	3	52800369	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	506506	52800369	145222061	56	15950											
ROBO2	6092	hgsc.bcm.edu;bcgsc.ca	37	3	77612404	77612404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ROBO2	NM_002942	exon11	c.A1606G	p.N536D	ACTAAGAACAGTG	.	117	6	179	0	.	328	G	77612404	A	G	77612404	3	3	128	1	0	0	0	0	1	0	0	0	13514	246	9	2	1650	2	ROBO2	3	77612404	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	24812035	77612404	120410026	57	15951											
UROC1	131669	hgsc.bcm.edu;bcgsc.ca	37	3	126220121	126220121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UROC1	NM_001165974	exon11	c.A1085G	p.E362G	CTTGCTTCCCTGG	.	50	4	83	0	.	91	C	126220121	T	C	126220121	3	2	128	1	0	0	0	0	1	0	0	0	17025	1783	62	2	1169	2	UROC1	3	126220121	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	48607717	126220121	71802309	58	15952											
NEK11	79858	hgsc.bcm.edu;bcgsc.ca	37	3	130881262	130881262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK11	NM_024800	exon11	c.A973G	p.I325V	AAAAGGATCCACC	.	146	6	194	0	.	848	G	130881262	A	G	130881262	3	3	128	1	0	0	0	0	1	0	0	0	10323	333	12	2	1007	2	NEK11	3	130881262	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4661141	130881262	67141168	59	15953											
ACPL2	92370	ucsc.edu;bcgsc.ca	37	3	141011192	141011192	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACPL2	NM_152282	exon8	c.T588C	p.S196S	TTGGTCTGCAGAC	.	47	4	64	0	.	91	C	141011192	T	C	141011192	2	2	128	1	0	0	0	0	0	0	0	1	166	1567	55	2		2	ACPL2	3	141011192	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	10129930	141011192	57011238	60	15954											
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170732421	170732421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC2A2	NM_000340	exon3	c.A208C	p.I70L	ATGAGATTGTGGG	.	482	136	698	0	.	515	G	170732421	T	G	170732421	3	3	128	1	0	0	0	0	1	0	0	0	14544	1493	52	5	1402	5	SLC2A2	3	170732421	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	29721229	170732421	27290009	61	15955											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185970912	185970912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKG	NM_001346	exon18	c.G1570A	p.D524N	CAAGGTCATTTCC	.	69	7	111	0	.	714	T	185970912	C	T	185970912	3	4	128	1	0	0	0	0	1	0	0	0	4469	826	29	3	837	3	DGKG	3	185970912	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	15238491	185970912	12051518	62	15956											
APOD	347	hgsc.bcm.edu;bcgsc.ca	37	3	195306237	195306237	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APOD	NM_001647	exon2	c.G96T	p.P32P	CTGCACCGGAGGA	.	45	4	89	0	.	516	A	195306237	C	A	195306237	2	1	128	1	0	0	0	0	0	0	0	1	801	639	23	1		1	APOD	3	195306237	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	9335325	195306237	2716193	63	15957											
SLC26A1	10861	hgsc.bcm.edu;bcgsc.ca	37	4	983816	983816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC26A1	NM_022042	exon3	c.T911C	p.L304P	GACACGAGTGTGG	.	72	5	78	0	.	91	G	983816	A	G	983816	3	3	128	1	0	0	0	0	1	0	0	0	14514	304	11	2	1301	2	SLC26A1	4	983816	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		983816	190170460	64	15958											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725244	30725244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDH7	NM_032457	exon1	c.G2200T	p.D734Y	GTGATGGATGAAA	.	141	35	238	0	.	229	T	30725244	G	T	30725244	3	4	128	1	0	0	0	0	1	0	0	0	11516	1174	41	3	2202	3	PCDH7	4	30725244	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	29741428	30725244	160429032	65	15959											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39435941	39435941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLB	NM_175737	exon2	c.A937T	p.T313S	GAAAACACGATGG	.	197	55	317	0	.	69	T	39435941	A	T	39435941	3	4	128	1	0	0	0	0	1	0	0	0	8332	159	6	4	943	4	KLB	4	39435941	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	8710697	39435941	151718335	66	15960											
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70504997	70504997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UGT2A1	NM_001252274	exon3	c.G965A	p.G322E	AGTTTTCCTAGTT	.	120	7	212	0	.	92	T	70504997	C	T	70504997	3	4	128	1	0	0	0	0	1	0	0	0	16950	855	30	3		3	UGT2A1	4	70504997	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	31069056	70504997	120649279	67	15961											
SCD5	79966	hgsc.bcm.edu;bcgsc.ca	37	4	83602015	83602015	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCD5	NM_024906	exon3	c.A414G	p.S138S	CGTCTCTGAGTAC	.	86	4	133	0	.	91	C	83602015	T	C	83602015	2	2	128	1	0	0	0	0	0	0	0	1	13887	1567	55	2		2	SCD5	4	83602015	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	13097018	83602015	107552261	68	15962											
PTPN13	5783	hgsc.bcm.edu;bcgsc.ca	37	4	87687669	87687669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPN13	NM_080685	exon27	c.A4343G	p.Q1448R	CAGGACAGGTAAC	.	79	4	119	0	.	230	G	87687669	A	G	87687669	3	3	128	1	0	0	0	0	1	0	0	0	12782	202	7	2	4445	2	PTPN13	4	87687669	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4085654	87687669	103466607	69	15963											
RAP1GDS1	5910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99300176	99300176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAP1GDS1	NM_001100426	exon5	c.A373G	p.R125G	GAGGGCAGAAGTG	.	65	15	129	0	.	660	G	99300176	A	G	99300176	3	3	128	1	0	0	0	0	1	0	0	0	13039	180	7	2	391	2	RAP1GDS1	4	99300176	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	11612507	99300176	91854100	70	15964											
CENPE	1062	hgsc.bcm.edu;bcgsc.ca	37	4	104116362	104116362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CENPE	NM_001813	exon5	c.T386C	p.V129A	TAAGATACACGTA	.	128	6	155	0	.	277	G	104116362	A	G	104116362	3	3	128	1	0	0	0	0	1	0	0	0	3230	391	14	2	7899	2	CENPE	4	104116362	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4816186	104116362	87037914	71	15965											
LRIT3	345193	hgsc.bcm.edu;bcgsc.ca	37	4	110791336	110791336	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRIT3	NM_198506	exon4	c.A1431G	p.Q477Q	GGATCAAACAATG	.	124	5	214	0	.	90	G	110791336	A	G	110791336	2	3	128	1	0	0	0	0	0	0	0	1	8949	11	1	2		2	LRIT3	4	110791336	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	6674974	110791336	80362940	72	15966											
HSPA4L	22824	hgsc.bcm.edu;bcgsc.ca	37	4	128716923	128716923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSPA4L	NM_014278	exon3	c.A166G	p.I56V	CAACAGATAGTCA	.	117	5	198	0	.	228	G	128716923	A	G	128716923	3	3	128	1	0	0	0	0	1	0	0	0	7413	347	12	2	176	2	HSPA4L	4	128716923	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	17925587	128716923	62437353	73	15967											
DCHS2	54798	hgsc.bcm.edu;bcgsc.ca	37	4	155180908	155180908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCHS2	NM_017639	exon20	c.G5213A	p.G1738E	AGTTGTCCTATTT	.	61	4	98	0	.	94	T	155180908	C	T	155180908	3	4	128	1	0	0	0	0	1	0	0	0	4288	869	30	3	3561	3	DCHS2	4	155180908	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	26463985	155180908	35973368	74	15968											
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156631936	156631936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GUCY1A3	NM_001130687	exon6	c.C619T	p.P207S	TTCTTCCCTAAGA	.	96	27	138	0	.	93	T	156631936	C	T	156631936	3	4	128	1	0	0	0	0	1	0	0	0	6894	623	22	3	633	3	GUCY1A3	4	156631936	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	1451028	156631936	34522340	75	15969											
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187584675	187584675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT1	NM_005245	exon3	c.T3358C	p.S1120P	ACGATGAAAGAGG	.	89	5	144	0	.	34	G	187584675	A	G	187584675	3	3	128	1	0	0	0	0	1	0	0	0	5689	246	9	2	10508	2	FAT1	4	187584675	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	30952739	187584675	3569601	76	15970											
SDHA	6389	broad.mit.edu;bcgsc.ca	37	5	251503	251503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SDHA	NM_004168	exon13	c.A1714T	p.M572L	AACCTGATGCTGT	.	355	73	446	1	.	226	T	251503	A	T	251503	3	4	128	1	0	0	0	0	1	0	0	0	13963	333	12	4	1764	4	SDHA	5	251503	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		251503	180663757	77	15971											
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82833999	82833999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VCAN	NM_004385	exon8	c.A5177G	p.K1726R	AAAGGAAGGAGGA	.	71	4	48	0	.	238	G	82833999	A	G	82833999	3	3	128	1	0	0	0	0	1	0	0	0	17135	72	3	2	5203	2	VCAN	5	82833999	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	82582496	82833999	98081261	78	15972											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150946265	150946265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT2	NM_001447	exon1	c.A2228T	p.D743V	CCAGCATCAGGGT	.	65	6	121	0	.	96	A	150946265	T	A	150946265	3	1	128	1	0	0	0	0	1	0	0	0	5690	1435	50	4	10913	4	FAT2	5	150946265	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	68112266	150946265	29968995	79	15973											
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	161292754	161292754	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GABRA1	NM_001127643	exon5	c.T215A	p.I72N	CTGATATCTTCGT	.	207	12	225	0	.	93	A	161292754	T	A	161292754	3	1	128	1	0	0	0	0	1	0	0	0	6160	1435	50	4	225	4	GABRA1	5	161292754	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	10346489	161292754	19622506	80	15974											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169508908	169508908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DOCK2	NM_004946	exon51	c.A5350G	p.S1784G	CGCCTCAGCCAGA	.	95	30	126	0	.	97	G	169508908	A	G	169508908	3	3	128	1	0	0	0	0	1	0	0	0	4687	188	7	2	5552	2	DOCK2	5	169508908	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	8216154	169508908	11406352	81	15975											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179298474	179298474	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D9B	NM_198868	exon15	c.C2472T	p.Y824Y	CACCATGTAAAGG	.	112	18	159	0	.	154	A	179298474	G	A	179298474	2	1	128	1	0	0	0	0	0	0	0	1	15625	1372	48	3		3	TBC1D9B	5	179298474	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	9789566	179298474	1616786	82	15976											
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180662368	180662368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM41	NM_201627	exon8	c.A1546G	p.S516G	GAATTTAGCTTCA	.	254	55	264	0	.	226	G	180662368	A	G	180662368	3	3	128	1	0	0	0	0	1	0	0	0	16513	420	15	2	2002	2	TRIM41	5	180662368	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1363894	180662368	252892	83	15977											
BTN3A1	11119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26413697	26413697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BTN3A1	NM_007048	exon10	c.A1319C	p.K440T	GGAATAAGTATCG	.	60	15	109	0	.	92	C	26413697	A	C	26413697	3	2	128	1	0	0	0	0	1	0	0	0	1562	72	3	5	1521	5	BTN3A1	6	26413697	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		26413697	144701370	84	15978											
ZNF165	7718	hgsc.bcm.edu;bcgsc.ca	37	6	28057118	28057118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF165	NM_003447	exon4	c.T1328A	p.L443H	CACATCTTATTCG	.	89	4	139	0	.	90	A	28057118	T	A	28057118	3	1	128	1	0	0	0	0	1	0	0	0	17737	1609	56	4	1338	4	ZNF165	6	28057118	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	1643421	28057118	143057949	85	15979											
SFTA2	389376	hgsc.bcm.edu;bcgsc.ca	37	6	30899268	30899268	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFTA2	NM_205854	exon3	c.A234G	p.T78T	CTGTCATGTGTTG	.	79	4	137	0	.	90	C	30899268	T	C	30899268	2	2	128	1	0	0	0	0	0	0	0	1	14187	1451	51	2		2	SFTA2	6	30899268	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	2842150	30899268	140215799	86	15980											
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33162736	33162736	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RXRB	NM_001270401	exon9	c.T1452C	p.P484P	CTGCTCAGGGTAC	.	171	8	294	0	.	189	G	33162736	A	G	33162736	2	3	128	1	0	0	0	0	0	0	0	1	13764	175	7	2		2	RXRB	6	33162736	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2263468	33162736	137952331	87	15981											
GRM4	2914	ucsc.edu;bcgsc.ca	37	6	34004201	34004201	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRM4	NM_000841	exon9	c.T1686C	p.Y562Y	CATGTCATAGGGA	.	43	4	49	0	.	525	G	34004201	A	G	34004201	2	3	128	1	0	0	0	0	0	0	0	1	6799	224	8	2		2	GRM4	6	34004201	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	841465	34004201	137110866	88	15982											
MAPK14	1432	hgsc.bcm.edu;bcgsc.ca	37	6	36027094	36027094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPK14	NM_139012	exon3	c.C275T	p.P92L	TTACACCTGCAAG	.	86	4	162	0	.	1444	T	36027094	C	T	36027094	3	4	128	1	0	0	0	0	1	0	0	0	9276	681	24	3	285	3	MAPK14	6	36027094	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	2022893	36027094	135087973	89	15983											
C6orf222	389384	broad.mit.edu;bcgsc.ca	37	6	36297976	36297976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C6orf222	NM_001010903	exon2	c.C492A	p.H164Q	GGCCGCGTGTTTC	.	308	30	450	2	.	93	T	36297976	G	T	36297976	3	4	128	1	0	0	0	0	1	0	0	0	2356	1136	40	1	1510	1	C6orf222	6	36297976	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	270882	36297976	134817091	90	15984											
DLK2	65989	hgsc.bcm.edu;bcgsc.ca	37	6	43419708	43419708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DLK2	NM_023932	exon5	c.A386G	p.E129G	TTGCGCTCGCAGT	.	49	4	83	0	.	68	C	43419708	T	C	43419708	3	2	128	1	0	0	0	0	1	0	0	0	4565	1551	54	2	773	2	DLK2	6	43419708	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	7121732	43419708	127695359	91	15985											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46657993	46657993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TDRD6	NM_001168359	exon1	c.G2128A	p.A710T	CAGAAAGCCAAGA	.	197	60	272	0	.	138	A	46657993	G	A	46657993	3	1	128	1	0	0	0	0	1	0	0	0	15731	971	34	3	2130	3	TDRD6	6	46657993	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	3238285	46657993	124457074	92	15986											
RIMS1	22999	hgsc.bcm.edu;bcgsc.ca	37	6	72968750	72968750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RIMS1	NM_014989	exon18	c.T2989C	p.S997P	GATGCCTCCCGAA	.	80	4	138	0	.	144	C	72968750	T	C	72968750	3	2	128	1	0	0	0	0	1	0	0	0	13367	1551	54	2	3222	2	RIMS1	6	72968750	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	26310757	72968750	98146317	93	15987											
ZNF292	23036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	87955340	87955340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF292	NM_015021	exon7	c.T998C	p.L333P	TCTTCCTGATTAA	.	200	46	276	2	.	72	C	87955340	T	C	87955340	3	2	128	1	0	0	0	0	1	0	0	0	17823	1580	55	2	1024	2	ZNF292	6	87955340	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	14986590	87955340	83159727	94	15988											
C6orf165	154313	hgsc.bcm.edu;bcgsc.ca	37	6	88123541	88123541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	C6orf165,brain,glioma,-1	C6orf165	NM_001031743	exon4	c.G206T	p.R69L	TGACTCGGCTATT	.	102	5	135	1	.	90	T	88123541	G	T	88123541	3	4	128	1	0	0	0	0	1	0	0	0	2341	1116	39	1	216	1	C6orf165	6	88123541	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	168201	88123541	82991526	95	15989											
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90438701	90438701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MDN1	NM_014611	exon36	c.A5298G	p.L1766L	CTTTGCTAATGCT	.	99	4	170	0	.	100	C	90438701	T	C	90438701	2	2	128	1	0	0	0	0	0	0	0	1	9415	1519	53	2		2	MDN1	6	90438701	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	2315160	90438701	80676366	96	15990											
MCM9	254394	hgsc.bcm.edu;bcgsc.ca	37	6	119147383	119147383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCM9	NM_017696	exon11	c.A1888G	p.R630G	ACTGTCTCTGGTA	.	105	5	150	0	.	515	C	119147383	T	C	119147383	3	2	128	1	0	0	0	0	1	0	0	0	9394	1566	54	2		2	MCM9	6	119147383	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	28708682	119147383	51967684	97	15991											
RNF146	81847	hgsc.bcm.edu;bcgsc.ca	37	6	127608496	127608496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF146	NM_001242850	exon3	c.T738C	p.S246S	AGACTCTTTTGCT	.	91	4	142	0	.	226	C	127608496	T	C	127608496	2	2	128	1	0	0	0	0	0	0	0	1	13448	1596	56	2		2	RNF146	6	127608496	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	8461113	127608496	43506571	98	15992											
ARHGAP18	93663	hgsc.bcm.edu;bcgsc.ca	37	6	129937450	129937450	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGAP18	NM_033515	exon8	c.953-2A>G	.	AGAATCTGCAAGA	.	86	4	167	0	.	230	C	129937450	T	C	129937450	5	2	128	1	0	0	0	0	0	0	1	0	868	1594	55	2	1076	2	ARHGAP18	6	129937450	Splice_Site	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	2328954	129937450	41177617	99	15993											
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139564133	139564133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXLNB	NM_153235	exon10	c.A1585T	p.S529C	GAGAACTGCCTAT	.	174	47	267	0	.	91	A	139564133	T	A	139564133	3	1	128	1	0	0	0	0	1	0	0	0	16785	1580	55	4	473	4	TXLNB	6	139564133	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	9626683	139564133	31550934	100	15994											
GPR126	57211	hgsc.bcm.edu;bcgsc.ca	37	6	142764487	142764487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR126	NM_020455	exon26	c.G3634A	p.G1212R	TTCCATGGACAAG	.	82	4	105	0	.	91	A	142764487	G	A	142764487	3	1	128	1	0	0	0	0	1	0	0	0	6640	1349	47	3	3736	3	GPR126	6	142764487	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	3200354	142764487	28350580	101	15995											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	143094773	143094773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP2	NM_006734	exon5	c.A1103G	p.K368R	GCAAGTTTCTGTT	.	115	6	201	0	.	95	C	143094773	T	C	143094773	3	2	128	1	0	0	0	0	1	0	0	0	7187	1841	64	2	6261	2	HIVEP2	6	143094773	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	330286	143094773	28020294	102	15996											
SHPRH	257218	broad.mit.edu;bcgsc.ca	37	6	146264289	146264289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SHPRH	NM_173082	exon9	c.T2228C	p.L743P	ACTCGAAGAGATG	.	129	7	161	1	.	92	G	146264289	A	G	146264289	3	3	128	1	0	0	0	0	1	0	0	0	14291	72	3	2	2955	2	SHPRH	6	146264289	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	3169516	146264289	24850778	103	15997											
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152605298	152605298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNE1	NM_182961	exon96	c.G18022T	p.D6008Y	TCTCATCCATCAA	.	38	4	75	0	.	607	A	152605298	C	A	152605298	3	1	128	1	0	0	0	0	1	0	0	0	15442	855	30	3	8648	3	SYNE1	6	152605298	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	6341009	152605298	18509769	104	15998											
T	6862	hgsc.bcm.edu;bcgsc.ca	37	6	166579280	166579280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	T	NM_003181	exon4	c.A520G	p.R174G	CAACTCTCACTAT	.	99	6	157	0	.	516	C	166579280	T	C	166579280	3	2	128	1	0	0	0	0	1	0	0	0	15485	1559	54	2	811	2	T	6	166579280	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	13973982	166579280	4535787	105	15999											
MLLT4	4301	hgsc.bcm.edu;bcgsc.ca	37	6	168307929	168307929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLLT4	NM_001040000	exon13	c.A1729G	p.R577G	ATGATCAGAGTAG	.	140	6	209	0	.	685	G	168307929	A	G	168307929	3	3	128	1	0	0	0	0	1	0	0	0	9629	180	7	2	1779	2	MLLT4	6	168307929	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1728649	168307929	2807138	106	16000											
FAM120B	84498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170657249	170657249	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM120B	NM_032448	exon5	c.T2028A	p.P676P	AACGCCTAGTTTG	.	46	16	62	0	.	91	A	170657249	T	A	170657249	2	1	128	1	0	0	0	0	0	0	0	1	5417	1509	53	4		4	FAM120B	6	170657249	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	2349320	170657249	457818	107	16001											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18687567	18687567	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HDAC9	NM_178425	exon9	c.C1195T	p.L399L	GCTCTCCTGCAGC	.	57	18	83	0	.	227	T	18687567	C	T	18687567	2	4	128	1	0	0	0	0	0	0	0	1	7014	680	24	3		3	HDAC9	7	18687567	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10		18687567	140451096	108	16002											
POU6F2	11281	hgsc.bcm.edu;bcgsc.ca	37	7	39500146	39500146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POU6F2	NM_007252	exon10	c.A1403G	p.N468S	CCACAGATCCTCA	.	161	8	234	0	.	90	G	39500146	A	G	39500146	3	3	128	1	0	0	0	0	1	0	0	0	12285	347	12	2	1437	2	POU6F2	7	39500146	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	20812579	39500146	119638517	109	16003											
HGF	3082	hgsc.bcm.edu;bcgsc.ca	37	7	81335733	81335733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HGF	NM_000601	exon15	c.G1627A	p.D543N	CATAATCTTTCAA	.	80	4	122	0	.	516	T	81335733	C	T	81335733	3	4	128	1	0	0	0	0	1	0	0	0	7085	913	32	3	575	3	HGF	7	81335733	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	41835587	81335733	77802930	110	16004											
KIAA1324L	222223	hgsc.bcm.edu;bcgsc.ca	37	7	86574222	86574222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1324L	NM_001142749	exon4	c.A647G	p.E216G	AAGAACTCAAAGA	.	134	6	245	0	.	97	C	86574222	T	C	86574222	3	2	128	1	0	0	0	0	1	0	0	0	8224	1551	54	2	2518	2	KIAA1324L	7	86574222	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	5238489	86574222	72564441	111	16005											
HEPACAM2	253012	hgsc.bcm.edu;bcgsc.ca	37	7	92825166	92825166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEPACAM2	NM_001039372	exon8	c.T1250C	p.F417S	TCTGGAAAAGCAA	.	89	5	113	0	.	157	G	92825166	A	G	92825166	3	3	128	1	0	0	0	0	1	0	0	0	7053	14	1	2	150	2	HEPACAM2	7	92825166	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	6250944	92825166	66313497	112	16006											
ACN9	57001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96810376	96810376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACN9	NM_020186	exon2	c.C227A	p.T76N	ATTCAACTGGAAA	.	385	131	649	0	.	90	A	96810376	C	A	96810376	3	1	128	1	0	0	0	0	1	0	0	0	145	565	20	3	233	3	ACN9	7	96810376	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	3985210	96810376	62328287	113	16007											
RELN	5649	hgsc.bcm.edu;bcgsc.ca	37	7	103180823	103180823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RELN	NM_173054	exon44	c.T6751C	p.S2251P	TGAGAGAATACTG	.	47	4	83	0	.	574	G	103180823	A	G	103180823	3	3	128	1	0	0	0	0	1	0	0	0	13220	246	9	2	3719	2	RELN	7	103180823	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	6370447	103180823	55957840	114	16008											
LRRN3	54674	hgsc.bcm.edu;bcgsc.ca	37	7	110764148	110764148	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRN3	NM_018334	exon2	c.T1320C	p.V440V	CTATGTTTCCTTT	.	50	4	82	0	.	154	C	110764148	T	C	110764148	2	2	128	1	0	0	0	0	0	0	0	1	9036	1828	64	2		2	LRRN3	7	110764148	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	7583325	110764148	48374515	115	16009											
AASS	10157	hgsc.bcm.edu;bcgsc.ca	37	7	121721604	121721604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AASS	NM_005763	exon20	c.A2230G	p.N744D	CTCTGTTTATAAG	.	67	4	110	0	.	92	C	121721604	T	C	121721604	3	2	128	1	0	0	0	0	1	0	0	0	24	1841	64	2	570	2	AASS	7	121721604	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	10957456	121721604	37417059	116	16010											
KLHDC10	23008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129761948	129761948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHDC10	NM_014997	exon5	c.A685G	p.I229V	GGCTATATTTACA	.	184	67	232	0	.	90	G	129761948	A	G	129761948	3	3	128	1	0	0	0	0	1	0	0	0	8355	449	16	2	703	2	KLHDC10	7	129761948	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	8040344	129761948	29376715	117	16011											
EXOC4	60412	hgsc.bcm.edu;bcgsc.ca	37	7	133692446	133692446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXOC4	NM_021807	exon17	c.T2545C	p.S849P	CTGATCTCCTGCA	.	81	4	129	0	.	159	C	133692446	T	C	133692446	3	2	128	1	0	0	0	0	1	0	0	0	5306	1551	54	2	2620	2	EXOC4	7	133692446	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	3930498	133692446	25446217	118	16012											
MYOM2	9172	hgsc.bcm.edu;bcgsc.ca	37	8	2071186	2071186	+	Missense_Mutation	SNP	C	C	T	rs139807442	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYOM2	NM_003970	exon29	c.C3515T	p.T1172M	ATGAAACGGAGAC	.	80	4	157	0	A|0.000;C|1.000;T|0.000	95	T	2071186	C	T	2071186	3	4	128	1	0	0	0	0	1	0	0	0	10092	536	19	1	3625	1	MYOM2	8	2071186	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10		2071186	144292836	119	16013											
CLDN23	137075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8560187	8560187	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_194284	exon1	c.G279T	p.L93L	GGTCCTGGGGCTT	.	17	6	17	0	.	.	T	8560187	G	T	8560187	2	4	128	1	0	0	0	0	0	0	0	1	3484	1335	47	3		3	CLDN23	8	8560187	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	6489001	8560187	137803835	120	16014											
LONRF1	91694	hgsc.bcm.edu;bcgsc.ca	37	8	12586494	12586494	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LONRF1	NM_152271	exon10	c.T1926C	p.V642V	TCCTCCAACTGTA	.	122	6	311	0	.	91	G	12586494	A	G	12586494	2	3	128	1	0	0	0	0	0	0	0	1	8894	117	5	2		2	LONRF1	8	12586494	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4026307	12586494	133777528	121	16015											
MTUS1	57509	hgsc.bcm.edu;bcgsc.ca	37	8	17541870	17541870	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTUS1	NM_001001924	exon7	c.A2805G	p.A935A	TGTCAATGCCTCA	.	79	4	169	0	.	92	C	17541870	T	C	17541870	2	2	128	1	0	0	0	0	0	0	0	1	9965	1451	51	2		2	MTUS1	8	17541870	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	4955376	17541870	128822152	122	16016											
HR	55806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21986470	21986470	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HR	NM_018411	exon2	c.A214C	p.M72L	GGAGCATGTCCTT	.	60	20	83	0	.	154	G	21986470	T	G	21986470	3	3	128	1	0	0	0	0	1	0	0	0	7347	1464	51	5	3427	5	HR	8	21986470	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	4444600	21986470	124377552	123	16017											
BAG4	9530	hgsc.bcm.edu;bcgsc.ca	37	8	38067825	38067825	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAG4	NM_004874	exon5	c.A1188G	p.E396E	ACAAGAAGTAGAA	.	93	4	235	0	.	228	G	38067825	A	G	38067825	2	3	128	1	0	0	0	0	0	0	0	1	1289	69	3	2		2	BAG4	8	38067825	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	16081355	38067825	108296197	124	16018											
NCOA2	10499	hgsc.bcm.edu;bcgsc.ca	37	8	71074948	71074948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCOA2	NM_006540	exon9	c.A974G	p.E325G	TTACCTTCATGAT	.	88	4	94	0	.	639	C	71074948	T	C	71074948	3	2	128	1	0	0	0	0	1	0	0	0	10229	1783	62	2	3480	2	NCOA2	8	71074948	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	33007123	71074948	75289074	125	16019											
OSGIN2	734	hgsc.bcm.edu;bcgsc.ca	37	8	90921887	90921887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSGIN2	NM_001126111	exon2	c.C137T	p.P46L	CGATGCCATTAGT	.	121	6	141	0	.	68	T	90921887	C	T	90921887	3	4	128	1	0	0	0	0	1	0	0	0	11290	594	21	3	143	3	OSGIN2	8	90921887	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	19846939	90921887	55442135	126	16020											
POP1	10940	ucsc.edu;bcgsc.ca	37	8	99170220	99170220	+	Silent	SNP	G	G	T	rs200939314	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POP1	NM_001145860	exon16	c.G2796T	p.A932A	CCCGGCGGGGGAA	.	32	4	29	0	G|0.999;A|0.000	154	T	99170220	G	T	99170220	2	4	128	1	0	0	0	0	0	0	0	1	12251	1103	39	1		1	POP1	8	99170220	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	8248333	99170220	47193802	127	16021											
MTSS1	9788	hgsc.bcm.edu;bcgsc.ca	37	8	125580779	125580779	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTSS1	NM_014751	exon8	c.461-2A>G	.	TCTCCCTGCAAAA	.	94	6	89	0	.	91	C	125580779	T	C	125580779	5	2	128	1	0	0	0	0	0	0	1	0	9962	1594	55	2	1840	2	MTSS1	8	125580779	Splice_Site	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	26410559	125580779	20783243	128	16022											
ZFAT	57623	hgsc.bcm.edu;bcgsc.ca	37	8	135545138	135545138	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZFAT	NM_020863	exon12	c.T3054C	p.P1018P	CTCATTAGGGTGC	.	59	4	80	0	.	90	G	135545138	A	G	135545138	2	3	128	1	0	0	0	0	0	0	0	1	17629	407	15	2		2	ZFAT	8	135545138	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	9964359	135545138	10818884	129	16023											
ZNF707	286075	hgsc.bcm.edu;bcgsc.ca	37	8	144773301	144773301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF707	NM_001100598	exon4	c.T74C	p.L25P	CGTGTCTGGAACC	.	143	7	160	0	.	67	C	144773301	T	C	144773301	3	2	128	1	0	0	0	0	1	0	0	0	18108	1580	55	2	80	2	ZNF707	8	144773301	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	9228163	144773301	1590721	130	16024											
PLEC	5339	hgsc.bcm.edu;bcgsc.ca	37	8	144991777	144991777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEC	NM_201380	exon32	c.T12623C	p.L4208P	TCGAAGAGGCCGC	.	144	6	127	0	.	141	G	144991777	A	G	144991777	3	3	128	1	0	0	0	0	1	0	0	0	12052	304	11	2	1435	2	PLEC	8	144991777	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	218476	144991777	1372245	131	16025											
IL11RA	3590	hgsc.bcm.edu;bcgsc.ca	37	9	34659894	34659894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL11RA	NM_001142784	exon9	c.A949G	p.T317A	CCGAGCACTGGTG	.	51	4	94	0	.	227	G	34659894	A	G	34659894	3	3	128	1	0	0	0	0	1	0	0	0	7623	159	6	2	979	2	IL11RA	9	34659894	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		34659894	106553537	132	16026											
FAM108B1	51104	hgsc.bcm.edu;bcgsc.ca	37	9	74485072	74485072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM108B1	NM_016014	exon3	c.T574C	p.S192P	GAGGAGAATGAAG	.	94	4	184	0	.	90	G	74485072	A	G	74485072	3	3	128	1	0	0	0	0	1	0	0	0	5392	246	9	2	331	2	FAM108B1	9	74485072	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	39825178	74485072	66728359	133	16027											
GAS1	2619	hgsc.bcm.edu;bcgsc.ca	37	9	89561085	89561085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GAS1	NM_002048	exon1	c.C610T	p.R204C	CGGTGCGGCATTC	.	39	4	63	0	.	226	A	89561085	G	A	89561085	3	1	128	1	0	0	0	0	1	0	0	0	6244	1116	39	1	431	1	GAS1	9	89561085	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	15076013	89561085	51652346	134	16028											
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95012165	95012165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IARS	NM_013417	exon25	c.A2591G	p.K864R	AAAGACTTGATAT	.	78	4	144	0	.	92	C	95012165	T	C	95012165	3	2	128	1	0	0	0	0	1	0	0	0	7473	1609	56	2	1237	2	IARS	9	95012165	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	5451080	95012165	46201266	135	16029											
NCBP1	4686	hgsc.bcm.edu;bcgsc.ca	37	9	100410502	100410502	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCBP1	NM_002486	exon8	c.C894A	p.P298P	TGATCCCGAGGTA	.	54	4	104	0	.	90	A	100410502	C	A	100410502	2	1	128	1	0	0	0	0	0	0	0	1	10211	639	23	1		1	NCBP1	9	100410502	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	5398337	100410502	40802929	136	16030											
ALG2	85365	hgsc.bcm.edu;bcgsc.ca	37	9	101980978	101980978	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG2	NM_033087	exon2	c.G489A	p.E163E	GTATTCCTCTATC	.	47	4	79	0	.	92	T	101980978	C	T	101980978	2	4	128	1	0	0	0	0	0	0	0	1	519	680	24	3		3	ALG2	9	101980978	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	1570476	101980978	39232453	137	16031											
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767561	105767561	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYLC2	NM_001340	exon5	c.T648C	p.D216D	GAAAGATAGCAAA	.	724	183	1067	0	.	91	C	105767561	T	C	105767561	2	2	128	1	0	0	0	0	0	0	0	1	4142	1403	49	2		2	CYLC2	9	105767561	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	3786583	105767561	35445870	138	16032											
SVEP1	79987	hgsc.bcm.edu;bcgsc.ca	37	9	113169313	113169313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SVEP1	NM_153366	exon38	c.A8567G	p.E2856G	GTGTATTCAATCT	.	78	4	106	0	.	75	C	113169313	T	C	113169313	3	2	128	1	0	0	0	0	1	0	0	0	15417	1783	62	2	2192	2	SVEP1	9	113169313	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	7401752	113169313	28044118	139	16033											
KIAA1958	158405	hgsc.bcm.edu;bcgsc.ca	37	9	115421704	115421704	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1958	NM_133465	exon4	c.C1506A	p.T502T	CAGCACCTTCAGC	.	73	4	82	0	.	91	A	115421704	C	A	115421704	2	1	128	1	0	0	0	0	0	0	0	1	8264	668	24	3		3	KIAA1958	9	115421704	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	2252391	115421704	25791727	140	16034											
POLE3	54107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	116172342	116172342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLE3	NM_017443	exon3	c.A145G	p.T49A	AGGATGTGGCGTA	.	43	4	67	0	.	227	C	116172342	T	C	116172342	3	2	128	1	0	0	0	0	1	0	0	0	12198	1696	59	2	310	2	POLE3	9	116172342	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	750638	116172342	25041089	141	16035											
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119858432	119858432	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ASTN2	NM_014010	exon5	c.1016-2A>T	.	TCCTCCTGTGAGT	.	81	25	134	0	.	161	A	119858432	T	A	119858432	5	1	128	1	0	0	0	0	0	0	1	0	1065	1594	55	4	3160	4	ASTN2	9	119858432	Splice_Site	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	3686090	119858432	21354999	142	16036											
ZNF79	7633	hgsc.bcm.edu;bcgsc.ca	37	9	130206630	130206630	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF79	NM_007135	exon5	c.A651G	p.G217G	CACTGGAGAGAAG	.	66	4	109	0	.	90	G	130206630	A	G	130206630	2	3	128	1	0	0	0	0	0	0	0	1	18158	291	11	2		2	ZNF79	9	130206630	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	10348198	130206630	11006801	143	16037											
ABL1	25	hgsc.bcm.edu;bcgsc.ca	37	9	133761037	133761037	+	Silent	SNP	G	G	T	rs148391456	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABL1	NM_007313	exon11	c.G3417T	p.S1139S	CAGTTCGGTGAAG	.	76	4	121	0	G|1.000;A|0.000	3810	T	133761037	G	T	133761037	2	4	128	1	0	0	0	0	0	0	0	1	92	1103	39	1		1	ABL1	9	133761037	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	3554407	133761037	7452394	144	16038											
NACC2	138151	hgsc.bcm.edu;bcgsc.ca	37	9	138905769	138905769	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NACC2	NM_144653	exon4	c.G1098A	p.L366L	TGCACACAGGTGG	.	72	4	93	0	.	90	T	138905769	C	T	138905769	2	4	128	1	0	0	0	0	0	0	0	1	10136	465	17	3		3	NACC2	9	138905769	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	5144732	138905769	2307662	145	16039											
DHTKD1	55526	hgsc.bcm.edu;bcgsc.ca	37	10	12160885	12160885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHTKD1	NM_018706	exon15	c.A2540G	p.Q847R	CTTTACAGCAAGA	.	74	4	106	0	.	515	G	12160885	A	G	12160885	3	3	128	1	0	0	0	0	1	0	0	0	4500	188	7	2	2598	2	DHTKD1	10	12160885	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		12160885	123373862	146	16040											
DKK1	22943	hgsc.bcm.edu;bcgsc.ca	37	10	54074421	54074421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DKK1	NM_012242	exon1	c.C227A	p.T76N	ACCAGACCATTGA	.	52	4	117	0	.	1083	A	54074421	C	A	54074421	3	1	128	1	0	0	0	0	1	0	0	0	4544	507	18	3	229	3	DKK1	10	54074421	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	41913536	54074421	81460326	147	16041											
ZNF365	22891	hgsc.bcm.edu;bcgsc.ca	37	10	64415380	64415380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF365	NM_199452	exon4	c.T380C	p.V127A	CAGGAGTTTCAAT	.	34	4	42	0	.	92	C	64415380	T	C	64415380	3	2	128	1	0	0	0	0	1	0	0	0	17866	1725	60	2	1868	2	ZNF365	10	64415380	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	10340959	64415380	71119367	148	16042											
ANXA7	310	hgsc.bcm.edu;bcgsc.ca	37	10	75156931	75156931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANXA7	NM_004034	exon4	c.C361A	p.P121T	GTAGTGGAACCTG	.	56	4	61	0	.	516	T	75156931	G	T	75156931	3	4	128	1	0	0	0	0	1	0	0	0	723	1174	41	3	1149	3	ANXA7	10	75156931	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	10741551	75156931	60377816	149	16043											
IFIT1	3434	hgsc.bcm.edu;bcgsc.ca	37	10	91163429	91163429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFIT1	NM_001548	exon2	c.T1397C	p.L466P	TGAGACTGGCTGC	.	99	5	118	0	.	90	C	91163429	T	C	91163429	3	2	128	1	0	0	0	0	1	0	0	0	7521	1580	55	2	1403	2	IFIT1	10	91163429	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	16006498	91163429	44371318	150	16044											
RRP12	23223	hgsc.bcm.edu;bcgsc.ca	37	10	99148093	99148093	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RRP12	NM_015179	exon8	c.G933T	p.L311L	GTCCTTCAGCAGC	.	71	4	93	0	.	92	A	99148093	C	A	99148093	2	1	128	1	0	0	0	0	0	0	0	1	13686	813	29	3		3	RRP12	10	99148093	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	7984664	99148093	36386654	151	16045											
GBF1	8729	hgsc.bcm.edu;bcgsc.ca	37	10	104119157	104119157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GBF1	NM_001199378	exon11	c.G1145C	p.R382P	ATCCCCGGGGCGT	.	76	4	114	0	.	91	C	104119157	G	C	104119157	3	2	128	1	0	0	0	0	1	0	0	0	6271	1116	39	4	1180	4	GBF1	10	104119157	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	4971064	104119157	31415590	152	16046											
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106970970	106970970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SORCS3	NM_014978	exon17	c.G2337T	p.K779N	ATCAAAGGACTGC	.	145	32	205	0	.	99	T	106970970	G	T	106970970	3	4	128	1	0	0	0	0	1	0	0	0	14932	991	35	3	2403	3	SORCS3	10	106970970	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	2851813	106970970	28563777	153	16047											
ODF3	113746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	197590	197590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ODF3	NM_053280	exon3	c.C139A	p.R47S	AAGCTGCGTGCAC	.	71	10	85	0	.	493	A	197590	C	A	197590	3	1	128	1	0	0	0	0	1	0	0	0	10829	768	27	1	145	1	ODF3	11	197590	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10		197590	134808926	154	16048											
BET1L	51272	hgsc.bcm.edu;bcgsc.ca	37	11	206034	206034	+	Missense_Mutation	SNP	G	G	T	rs199668338	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BET1L	NM_016526	exon2	c.C29A	p.P10Q	GCGCCCGGGCTCT	.	70	4	119	0	.	514	T	206034	G	T	206034	3	4	128	1	0	0	0	0	1	0	0	0	1409	1116	39	1	455	1	BET1L	11	206034	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	8444	206034	134800482	155	16049											
TSPAN32	10077	hgsc.bcm.edu;bcgsc.ca	37	11	2337500	2337500	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN32	NM_139022	exon7	c.G585A	p.Q195Q	ACACCAGCAGGTC	.	120	6	203	0	.	23	A	2337500	G	A	2337500	2	1	128	1	0	0	0	0	0	0	0	1	16644	962	34	3		3	TSPAN32	11	2337500	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	2131466	2337500	132669016	156	16050											
ST5	6764	hgsc.bcm.edu;bcgsc.ca	37	11	8717087	8717087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ST5	NM_213618	exon19	c.A3302G	p.E1101G	CGCTGCTCAAAAA	.	60	4	80	0	.	227	C	8717087	T	C	8717087	3	2	128	1	0	0	0	0	1	0	0	0	15219	1551	54	2	119	2	ST5	11	8717087	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	6379587	8717087	126289429	157	16051											
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32956867	32956867	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	QSER1	NM_001076786	exon4	c.T3676C	p.L1226L	GAACATTTATCTT	.	54	4	52	0	.	95	C	32956867	T	C	32956867	2	2	128	1	0	0	0	0	0	0	0	1	12882	1838	64	2		2	QSER1	11	32956867	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	24239780	32956867	102049649	158	16052											
OR4S1	256148	hgsc.bcm.edu;bcgsc.ca	37	11	48328087	48328087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR4S1	NM_001004725	exon1	c.T313C	p.F105L	CACTTCTTTGGTG	.	81	4	135	0	.	69	C	48328087	T	C	48328087	3	2	128	1	0	0	0	0	1	0	0	0	11082	1609	56	2	315	2	OR4S1	11	48328087	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	15371220	48328087	86678429	159	16053											
EML3	256364	hgsc.bcm.edu;bcgsc.ca	37	11	62375693	62375693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EML3	NM_153265	exon10	c.A1186G	p.M396V	GCTTCATTCCCCG	.	59	4	104	0	.	91	C	62375693	T	C	62375693	3	2	128	1	0	0	0	0	1	0	0	0	5098	1493	52	2	1556	2	EML3	11	62375693	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	14047606	62375693	72630823	160	16054											
STIP1	10963	hgsc.bcm.edu;bcgsc.ca	37	11	63970927	63970927	+	Silent	SNP	G	G	T	rs144539134	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STIP1	NM_006819	exon13	c.G1392T	p.A464A	GGAGGCGGCAGAC	.	67	4	94	0	G|1.000;A|0.000	93	T	63970927	G	T	63970927	2	4	128	1	0	0	0	0	0	0	0	1	15284	1103	39	1		1	STIP1	11	63970927	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1595234	63970927	71035589	161	16055											
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65349836	65349836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHBP1L1	NM_001099409	exon9	c.G1693A	p.G565R	GAAGCTGGGGGTT	.	39	9	50	0	.	69	A	65349836	G	A	65349836	3	1	128	1	0	0	0	0	1	0	0	0	4976	1348	47	3	1727	3	EHBP1L1	11	65349836	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1378909	65349836	69656680	162	16056											
TBX10	347853	hgsc.bcm.edu;bcgsc.ca	37	11	67406938	67406938	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBX10	NM_005995	exon1	c.A6G	p.A2A	CCTACCTGCCATG	.	66	4	99	0	.	90	C	67406938	T	C	67406938	2	2	128	1	0	0	0	0	0	0	0	1	15648	1594	55	2		2	TBX10	11	67406938	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	2057102	67406938	67599578	163	16057											
ALG8	79053	hgsc.bcm.edu;bcgsc.ca	37	11	77832116	77832116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG8	NM_024079	exon4	c.T473C	p.V158A	CGGTCCACAATTA	.	98	5	148	0	.	93	G	77832116	A	G	77832116	3	3	128	1	0	0	0	0	1	0	0	0	523	159	6	2	1206	2	ALG8	11	77832116	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	10425178	77832116	57174400	164	16058											
FAM76B	143684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95516268	95516268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM76B	NM_144664	exon5	c.A524G	p.H175R	TGATGATGGTGGT	.	315	80	443	1	.	90	C	95516268	T	C	95516268	3	2	128	1	0	0	0	0	1	0	0	0	5625	1464	51	2	519	2	FAM76B	11	95516268	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	17684152	95516268	39490248	165	16059											
SCN2B	6327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118037686	118037686	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCN2B	NM_004588	exon4	c.G564A	p.E188E	CTTCTGCTCTTTT	.	222	65	329	2	.	90	T	118037686	C	T	118037686	2	4	128	1	0	0	0	0	0	0	0	1	13917	796	28	3		3	SCN2B	11	118037686	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	22521418	118037686	16968830	166	16060											
DDX6	1656	hgsc.bcm.edu;bcgsc.ca	37	11	118626140	118626140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DDX6	NM_004397	exon12	c.A1247G	p.E416G	TAGGTCTCTGCCA	.	86	5	142	0	.	659	C	118626140	T	C	118626140	3	2	128	1	0	0	0	0	1	0	0	0	4377	1551	54	2	212	2	DDX6	11	118626140	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	588454	118626140	16380376	167	16061											
NOP2	4839	hgsc.bcm.edu;bcgsc.ca	37	12	6669315	6669315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOP2	NM_001258309	exon16	c.T1837C	p.F613L	CAATGAAGAACCC	.	67	4	128	0	.	92	G	6669315	A	G	6669315	3	3	128	1	0	0	0	0	1	0	0	0	10538	72	3	2	708	2	NOP2	12	6669315	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		6669315	127182580	168	16062											
GPR84	53831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	54757018	54757018	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR84	NM_020370	exon2	c.A618G	p.K206K	TGCTCGTTTGACC	.	51	5	76	0	.	523	C	54757018	T	C	54757018	2	2	128	1	0	0	0	0	0	0	0	1	6714	1722	60	2		2	GPR84	12	54757018	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	48087703	54757018	79094877	169	16063											
PIP4K2C	79837	hgsc.bcm.edu;bcgsc.ca	37	12	57989718	57989718	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2C	NM_001146258	exon4	c.T417C	p.G139G	TGATGGTCGCTTC	.	87	4	146	0	.	689	C	57989718	T	C	57989718	2	2	128	1	0	0	0	0	0	0	0	1	11938	1654	58	2		2	PIP4K2C	12	57989718	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	3232700	57989718	75862177	170	16064											
NAV3	89795	hgsc.bcm.edu;bcgsc.ca	37	12	78598913	78598913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV3	NM_014903	exon38	c.C6967A	p.P2323T	GGAGATCCCCTGG	.	58	4	69	0	.	279	A	78598913	C	A	78598913	3	1	128	1	0	0	0	0	1	0	0	0	10185	855	30	3	7117	3	NAV3	12	78598913	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	20609195	78598913	55252982	171	16065											
USP44	84101	hgsc.bcm.edu;bcgsc.ca	37	12	95922582	95922582	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP44	NM_032147	exon4	c.1624+1G>A	.	TACTCACAGTTAC	.	100	5	176	0	.	658	T	95922582	C	T	95922582	5	4	128	1	0	0	0	0	0	0	1	0	17072	492	17	3	529	3	USP44	12	95922582	Splice_Site	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	17323669	95922582	37929313	172	16066											
SLC5A8	160728	hgsc.bcm.edu;bcgsc.ca	37	12	101581168	101581168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC5A8	NM_145913	exon7	c.A959G	p.D320G	ACCTGGTCTGGTG	.	97	4	109	0	.	90	C	101581168	T	C	101581168	3	2	128	1	0	0	0	0	1	0	0	0	14671	1667	58	2	909	2	SLC5A8	12	101581168	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	5658586	101581168	32270727	173	16067											
DAO	1610	hgsc.bcm.edu;bcgsc.ca	37	12	109294259	109294259	+	Missense_Mutation	SNP	G	G	A	rs4262766	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAO	NM_001917	exon11	c.G992A	p.G331E	TCTTTGGGAGAAT	.	70	4	81	0	G|1.000;A|0.000	92	A	109294259	G	A	109294259	3	1	128	1	0	0	0	0	1	0	0	0	4231	1232	43	3	1030	3	DAO	12	109294259	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	7713091	109294259	24557636	174	16068											
CIT	11113	hgsc.bcm.edu;bcgsc.ca	37	12	120214542	120214542	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CIT	NM_001206999	exon14	c.A1770G	p.R590R	AGACTCTCTCAGC	.	69	4	108	0	.	399	C	120214542	T	C	120214542	2	2	128	1	0	0	0	0	0	0	0	1	3438	1548	54	2		2	CIT	12	120214542	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	10920283	120214542	13637353	175	16069											
GCN1L1	10985	hgsc.bcm.edu;bcgsc.ca	37	12	120582132	120582132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon42	c.T5473C	p.F1825L	CATCAAAGAGGCC	.	115	6	190	0	.	94	G	120582132	A	G	120582132	3	3	128	1	0	0	0	0	1	0	0	0	6299	72	3	2	2610	2	GCN1L1	12	120582132	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	367590	120582132	13269763	176	16070											
GCN1L1	10985	hgsc.bcm.edu;bcgsc.ca	37	12	120591048	120591048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon33	c.T4031C	p.L1344P	GCGATGAGCTTGG	.	110	5	188	0	.	94	G	120591048	A	G	120591048	3	3	128	1	0	0	0	0	1	0	0	0	6299	304	11	2	4088	2	GCN1L1	12	120591048	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	8916	120591048	13260847	177	16071											
CLIP1	6249	ucsc.edu;bcgsc.ca	37	12	122773083	122773083	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLIP1	NM_001247997	exon21	c.A3600G	p.E1200E	TTCTTCTTCCAGC	.	33	4	64	0	.	155	C	122773083	T	C	122773083	2	2	128	1	0	0	0	0	0	0	0	1	3532	1606	56	2		2	CLIP1	12	122773083	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	2182035	122773083	11078812	178	16072											
ZNF664	144348	hgsc.bcm.edu;bcgsc.ca	37	12	124497322	124497322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF664	NM_152437	exon5	c.A631G	p.S211G	AGTCAGAGTTCGA	.	60	4	95	0	.	90	G	124497322	A	G	124497322	3	3	128	1	0	0	0	0	1	0	0	0	18069	304	11	2	633	2	ZNF664	12	124497322	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1724239	124497322	9354573	179	16073											
GJB6	10804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20797362	20797362	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GJB6	NM_001110220	exon4	c.C258A	p.T86T	CGCTGGGGTGGAG	.	49	9	91	0	.	91	T	20797362	G	T	20797362	2	4	128	1	0	0	0	0	0	0	0	1	6412	1219	43	3		3	GJB6	13	20797362	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10		20797362	94372516	180	16074											
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31232538	31232538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USPL1	NM_005800	exon9	c.T2324C	p.V775A	TCTGTGTTTCAGC	.	83	5	123	0	.	524	C	31232538	T	C	31232538	3	2	128	1	0	0	0	0	1	0	0	0	17089	1725	60	2	2354	2	USPL1	13	31232538	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	10435176	31232538	83937340	181	16075											
OR10G2	26534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	22102803	22102803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR10G2	NM_001005466	exon1	c.A196G	p.I66V	GAAGAATGTACAT	.	290	71	447	0	.	69	C	22102803	T	C	22102803	3	2	128	1	0	0	0	0	1	0	0	0	10899	1464	51	2	739	2	OR10G2	14	22102803	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10		22102803	85246737	182	16076											
RNF31	55072	ucsc.edu;bcgsc.ca	37	14	24620086	24620086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF31	NM_017999	exon8	c.A1477G	p.S493G	CTAGTGAGCATGA	.	28	4	40	0	.	90	G	24620086	A	G	24620086	3	3	128	1	0	0	0	0	1	0	0	0	13487	304	11	2	1507	2	RNF31	14	24620086	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2517283	24620086	82729454	183	16077											
FAM179B	23116	hgsc.bcm.edu;bcgsc.ca	37	14	45535808	45535808	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM179B	NM_015091	exon16	c.C4428T	p.T1476T	AGTCACCAGAAAA	.	81	4	167	0	.	93	T	45535808	C	T	45535808	2	4	128	1	0	0	0	0	0	0	0	1	5506	581	21	3		3	FAM179B	14	45535808	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	20915722	45535808	61813732	184	16078											
SPTB	6710	hgsc.bcm.edu;bcgsc.ca	37	14	65241212	65241212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTB	NM_001024858	exon23	c.C4876T	p.H1626Y	GCAAATGTCGCTT	.	81	4	129	0	.	100	A	65241212	G	A	65241212	3	1	128	1	0	0	0	0	1	0	0	0	15117	1377	48	3	2231	3	SPTB	14	65241212	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	19705404	65241212	42108328	185	16079											
PPP4R4	57718	hgsc.bcm.edu;bcgsc.ca	37	14	94716580	94716580	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPP4R4	NM_058237	exon15	c.A1683G	p.E561E	ACAAGAACAGAGA	.	66	4	118	0	.	94	G	94716580	A	G	94716580	2	3	128	1	0	0	0	0	0	0	0	1	12405	40	2	2		2	PPP4R4	14	94716580	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	29475368	94716580	12632960	186	16080											
SERPINA10	51156	hgsc.bcm.edu;bcgsc.ca	37	14	94750485	94750485	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA10	NM_001100607	exon5	c.A1152G	p.Q384Q	TGTTCTTTGTAAA	.	62	4	91	0	.	228	C	94750485	T	C	94750485	2	2	128	1	0	0	0	0	0	0	0	1	14087	1838	64	2		2	SERPINA10	14	94750485	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	33905	94750485	12599055	187	16081											
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94845816	94845816	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA1	NM_001127701	exon6	c.C1050T	p.P350P	CTTCAGGGGTGCC	.	53	6	79	0	.	226	A	94845816	G	A	94845816	2	1	128	1	0	0	0	0	0	0	0	1	14086	1219	43	3		3	SERPINA1	14	94845816	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	95331	94845816	12503724	188	16082											
MAPKBP1	23005	hgsc.bcm.edu;bcgsc.ca	37	15	42104835	42104835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPKBP1	NM_001128608	exon7	c.A620G	p.D207G	TCGATGACAGCAA	.	61	4	110	0	.	589	G	42104835	A	G	42104835	3	3	128	1	0	0	0	0	1	0	0	0	9292	275	10	2	642	2	MAPKBP1	15	42104835	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		42104835	60426557	189	16083											
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44859730	44859730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon36	c.G6646A	p.E2216K	GCTTTTCACTGTC	.	73	4	142	0	.	95	T	44859730	C	T	44859730	3	4	128	1	0	0	0	0	1	0	0	0	15040	835	29	3	705	3	SPG11	15	44859730	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	2754895	44859730	57671662	190	16084											
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44903081	44903081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon18	c.T3248C	p.L1083P	AGGGCCAGGAGGG	.	95	5	116	0	.	95	G	44903081	A	G	44903081	3	3	128	1	0	0	0	0	1	0	0	0	15040	188	7	2	4175	2	SPG11	15	44903081	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	43351	44903081	57628311	191	16085											
SLC24A5	283652	hgsc.bcm.edu;bcgsc.ca	37	15	48413333	48413333	+	Missense_Mutation	SNP	C	C	A	rs201294244	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC24A5	NM_205850	exon1	c.C92A	p.S31Y	GGACCTCCCTGCC	.	55	4	60	0	C|0.999;T|0.001	90	A	48413333	C	A	48413333	3	1	128	1	0	0	0	0	1	0	0	0	14469	855	30	3	94	3	SLC24A5	15	48413333	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	3510252	48413333	54118059	192	16086											
WDR72	256764	hgsc.bcm.edu;bcgsc.ca	37	15	54003136	54003136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR72	NM_182758	exon9	c.G872A	p.S291N	TATATGCTTTTTG	.	52	4	47	0	.	92	T	54003136	C	T	54003136	3	4	128	1	0	0	0	0	1	0	0	0	17319	797	28	3	2484	3	WDR72	15	54003136	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	5589803	54003136	48528256	193	16087											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	62352482	62352482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPS13C	NM_020821	exon1	c.T92G	p.I31S	CCCCAGATGCCCA	.	50	15	84	0	.	92	C	62352482	A	C	62352482	3	2	128	1	0	0	0	0	1	0	0	0	17188	333	12	5	11537	5	VPS13C	15	62352482	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	8349346	62352482	40178910	194	16088											
TBC1D2B	23102	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	78301403	78301403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon10	c.T2324C	p.L775P	GTAACGAGACACC	.	36	4	95	0	.	136	G	78301403	A	G	78301403	3	3	128	1	0	0	0	0	1	0	0	0	15616	304	11	2	583	2	TBC1D2B	15	78301403	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	15948921	78301403	24229989	195	16089											
TBC1D2B	23102	hgsc.bcm.edu;bcgsc.ca	37	15	78308988	78308988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon8	c.G1675A	p.G559R	TGGGCCCCTGGTC	.	75	4	105	0	.	136	T	78308988	C	T	78308988	3	4	128	1	0	0	0	0	1	0	0	0	15616	623	22	3	1240	3	TBC1D2B	15	78308988	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	7585	78308988	24222404	196	16090											
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86273745	86273745	+	Silent	SNP	A	A	G	rs116261620	byfrequency;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP13	NM_006738	exon30	c.A7101G	p.E2367E	TGCAGAACAACTT	.	56	4	60	0	A|0.998;C|0.002	258	G	86273745	A	G	86273745	2	3	128	1	0	0	0	0	0	0	0	1	449	57	2	2		2	AKAP13	15	86273745	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	7964757	86273745	16257647	197	16091											
C16orf71	146562	hgsc.bcm.edu;bcgsc.ca	37	16	4793096	4793096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf71	NM_139170	exon5	c.A836G	p.E279G	GACAAGAAGACAA	.	86	4	126	0	.	68	G	4793096	A	G	4793096	3	3	128	1	0	0	0	0	1	0	0	0	1830	246	9	2	850	2	C16orf71	16	4793096	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		4793096	85561657	198	16092											
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15128199	15128199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDXDC1	NM_015027	exon20	c.G1869T	p.E623D	AGTGGAGCTGCAG	.	73	4	97	0	.	91	T	15128199	G	T	15128199	3	4	128	1	0	0	0	0	1	0	0	0	11696	962	34	3	1947	3	PDXDC1	16	15128199	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	10335103	15128199	75226554	199	16093											
DNAH3	55567	hgsc.bcm.edu;bcgsc.ca	37	16	20974803	20974803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon53	c.A10403G	p.Q3468R	AATCCTTGAGAGA	.	78	4	99	0	.	167	C	20974803	T	C	20974803	3	2	128	1	0	0	0	0	1	0	0	0	4603	1812	63	2	1986	2	DNAH3	16	20974803	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	5846604	20974803	69379950	200	16094											
ZNF688	146542	hgsc.bcm.edu;bcgsc.ca	37	16	30582420	30582420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF688	NM_145271	exon2	c.T221C	p.L74P	GAGATGAGGGCTG	.	64	4	94	0	.	68	G	30582420	A	G	30582420	3	3	128	1	0	0	0	0	1	0	0	0	18090	304	11	2	617	2	ZNF688	16	30582420	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	9607617	30582420	59772333	201	16095											
PRSS8	5652	hgsc.bcm.edu;bcgsc.ca	37	16	31143805	31143805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_002773	exon5	c.T650C	p.V217A	TCTTGGACAAAGT	.	92	7	121	0	.	.	G	31143805	A	G	31143805	3	3	128	1	0	0	0	0	1	0	0	0	12635	275	10	2	389	2	PRSS8	16	31143805	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	561385	31143805	59210948	202	16096											
ADCY7	113	hgsc.bcm.edu;bcgsc.ca	37	16	50346835	50346835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY7	NM_001114	exon21	c.T2639C	p.V880A	TCTGTGTCATGTT	.	51	4	83	0	.	91	C	50346835	T	C	50346835	3	2	128	1	0	0	0	0	1	0	0	0	299	1667	58	2	2721	2	ADCY7	16	50346835	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	19203030	50346835	40007918	203	16097											
C16orf80	29105	hgsc.bcm.edu;bcgsc.ca	37	16	58148804	58148804	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf80	NM_013242	exon5	c.C486A	p.I162I	CCGTCGGATGCGA	.	70	4	110	0	.	226	T	58148804	G	T	58148804	2	4	128	1	0	0	0	0	0	0	0	1	1837	1164	41	3		3	C16orf80	16	58148804	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	7801969	58148804	32205949	204	16098											
MVD	4597	hgsc.bcm.edu;bcgsc.ca	37	16	88724396	88724396	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MVD	NM_002461	exon3	c.C183A	p.T61T	GTCCTCGGTGAAG	.	115	5	169	0	.	90	T	88724396	G	T	88724396	2	4	128	1	0	0	0	0	0	0	0	1	9994	1103	39	1		1	MVD	16	88724396	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	30575592	88724396	1630357	205	16099											
NLRP1	22861	hgsc.bcm.edu;bcgsc.ca	37	17	5425083	5425083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP1	NM_001033053	exon13	c.T3556C	p.F1186L	TTTGGAACAGGGA	.	51	4	61	0	.	274	G	5425083	A	G	5425083	3	3	128	1	0	0	0	0	1	0	0	0	10471	43	2	2	960	2	NLRP1	17	5425083	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10		5425083	75770127	206	16100											
ACAP1	9744	hgsc.bcm.edu;bcgsc.ca	37	17	7249578	7249578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAP1	NM_014716	exon11	c.T870C	p.I290I	CACCATTCAGAGC	.	109	5	189	0	.	153	C	7249578	T	C	7249578	2	2	128	1	0	0	0	0	0	0	0	1	118	1771	62	2		2	ACAP1	17	7249578	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	1824495	7249578	73945632	207	16101											
PIGS	94005	hgsc.bcm.edu;bcgsc.ca	37	17	26888474	26888474	+	Missense_Mutation	SNP	G	G	T	rs116094938	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIGS	NM_033198	exon6	c.C642A	p.S214R	CTCAGCGCTCCAC	.	82	5	141	0	G|1.000;A|0.000	289	T	26888474	G	T	26888474	3	4	128	1	0	0	0	0	1	0	0	0	11898	1078	38	1	1053	1	PIGS	17	26888474	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	19638896	26888474	54306736	208	16102											
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27251158	27251158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHF12	NM_020889	exon4	c.A484G	p.S162G	GCCTGCTGGCTCT	.	186	8	275	0	.	91	C	27251158	T	C	27251158	3	2	128	1	0	0	0	0	1	0	0	0	11823	1580	55	2	2604	2	PHF12	17	27251158	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	362684	27251158	53944052	209	16103											
ACACA	31	hgsc.bcm.edu;bcgsc.ca	37	17	35598872	35598872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACACA	NM_198834	exon23	c.A3029G	p.Q1010R	TACCTCTGTACCA	.	121	5	224	0	.	154	C	35598872	T	C	35598872	3	2	128	1	0	0	0	0	1	0	0	0	106	1580	55	2	4258	2	ACACA	17	35598872	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	8347714	35598872	45596338	210	16104											
PIP4K2B	8396	hgsc.bcm.edu;bcgsc.ca	37	17	36934625	36934625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2B	NM_003559	exon6	c.G655A	p.G219S	TAGAACCCTGAAA	.	55	4	71	0	.	266	T	36934625	C	T	36934625	3	4	128	1	0	0	0	0	1	0	0	0	11937	637	22	3	615	3	PIP4K2B	17	36934625	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	1335753	36934625	44260585	211	16105											
GRB7	2886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37902437	37902437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRB7	NM_001242442	exon14	c.G1503T	p.K501N	AGTGAAGCATTAT	.	102	27	172	1	.	848	T	37902437	G	T	37902437	3	4	128	1	0	0	0	0	1	0	0	0	6759	962	34	3	1484	3	GRB7	17	37902437	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	967812	37902437	43292773	212	16106											
KRTAP4-11	653240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39274140	39274140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_033059	exon1	c.G428T	p.S143I	CAGCAGCTGGAGA	.	97	18	148	0	.	.	A	39274140	C	A	39274140	3	1	128	1	0	0	0	0	1	0	0	0	8549	797	28	3	163	3	KRTAP4-11	17	39274140	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	1371703	39274140	41921070	213	16107											
HAP1	9001	hgsc.bcm.edu;bcgsc.ca	37	17	39889015	39889015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HAP1	NM_177977	exon2	c.A505G	p.I169V	GGGTGATCTTTTT	.	130	6	250	0	.	92	C	39889015	T	C	39889015	3	2	128	1	0	0	0	0	1	0	0	0	6953	1435	50	2	1418	2	HAP1	17	39889015	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	614875	39889015	41306195	214	16108											
KAT2A	2648	hgsc.bcm.edu;bcgsc.ca	37	17	40266531	40266531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KAT2A	NM_021078	exon14	c.C2111A	p.P704H	TCCACAGGGATCT	.	68	4	104	0	.	523	T	40266531	G	T	40266531	3	4	128	1	0	0	0	0	1	0	0	0	7981	1000	35	3	422	3	KAT2A	17	40266531	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	377516	40266531	40928679	215	16109											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41246557	41246557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BRCA1	NM_007300	exon10	c.A991G	p.R331G	TCCGCCTATCATT	.	116	5	154	0	.	3415	C	41246557	T	C	41246557	3	2	128	1	0	0	0	0	1	0	0	0	1498	1521	53	2	4726	2	BRCA1	17	41246557	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	980026	41246557	39948653	216	16110											
MAPT	4137	hgsc.bcm.edu;bcgsc.ca	37	17	44049223	44049223	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPT	NM_001123066	exon3	c.134-2A>G	.	TGTTCCAGAATCT	.	57	4	85	0	.	91	G	44049223	A	G	44049223	5	3	128	1	0	0	0	0	0	0	1	0	9297	202	7	2	138	2	MAPT	17	44049223	Splice_Site	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2802666	44049223	37145987	217	16111											
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45894019	45894019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSBPL7	NM_145798	exon10	c.C838A	p.L280M	ACTCCAGGTAGCG	.	63	14	94	0	.	68	T	45894019	G	T	45894019	3	4	128	1	0	0	0	0	1	0	0	0	11282	991	35	3	1746	3	OSBPL7	17	45894019	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1844796	45894019	35301191	218	16112											
SNF8	11267	hgsc.bcm.edu;bcgsc.ca	37	17	47022064	47022064	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SNF8	NM_007241	exon1	c.C33A	p.I11I	CTTGGCGATGGCG	.	41	4	58	0	.	90	T	47022064	G	T	47022064	2	4	128	1	0	0	0	0	0	0	0	1	14846	1048	37	1		1	SNF8	17	47022064	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1128045	47022064	34173146	219	16113											
GNA13	10672	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	63014414	63014414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GNA13	NM_006572	exon3	c.C518A	p.S173Y	TTTACAGATTCAC	.	277	20	378	1	.	227	T	63014414	G	T	63014414	3	4	128	1	0	0	0	0	1	0	0	0	6501	942	33	3	623	3	GNA13	17	63014414	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	15992350	63014414	18180796	220	16114											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65942113	65942113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_182641	exon21	c.C7289T	p.P2430L	CACAGCCCCAAGT	.	149	31	198	0	.	94	T	65942113	C	T	65942113	3	4	128	1	0	0	0	0	1	0	0	0	1495	623	22	3	7757	3	BPTF	17	65942113	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	2927699	65942113	15253097	221	16115											
ABCA6	23460	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	67111077	67111077	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA6	NM_080284	exon13	c.A1608G	p.G536G	AACTGATCCTAAG	.	46	5	52	0	.	159	C	67111077	T	C	67111077	2	2	128	1	0	0	0	0	0	0	0	1	36	1449	50	2		2	ABCA6	17	67111077	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	1168964	67111077	14084133	222	16116											
TMEM104	54868	hgsc.bcm.edu;ucsc.edu	37	17	72784959	72784959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM104	NM_017728	exon4	c.A199G	p.M67V	GAGGCCATGGCTG	.	42	4	48	0	.	90	G	72784959	A	G	72784959	3	3	128	1	0	0	0	0	1	0	0	0	16015	217	8	2	209	2	TMEM104	17	72784959	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	5673882	72784959	8410251	223	16117											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74014678	74014678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVPL	NM_001988	exon12	c.C1288A	p.Q430K	GCAGCTGCACCTG	.	140	41	199	0	.	93	T	74014678	G	T	74014678	3	4	128	1	0	0	0	0	1	0	0	0	5292	1328	46	3	4857	3	EVPL	17	74014678	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1229719	74014678	7180532	224	16118											
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74898718	74898718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT5B	NM_198955	exon3	c.G444T	p.Q148H	GGACCAGATCCTG	.	117	23	207	0	.	93	T	74898718	G	T	74898718	3	4	128	1	0	0	0	0	1	0	0	0	9549	933	33	3	526	3	MGAT5B	17	74898718	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	884040	74898718	6296492	225	16119											
SEPT9	10801	hgsc.bcm.edu;bcgsc.ca	37	17	75471676	75471676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEPT9	NM_001113495	exon1	c.T76C	p.S26P	CTGGATTCAGGGG	.	81	4	153	0	.	659	C	75471676	T	C	75471676	3	2	128	1	0	0	0	0	1	0	0	0	14071	1783	62	2	896	2	SEPT9	17	75471676	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	572958	75471676	5723534	226	16120											
CYTH1	9267	hgsc.bcm.edu;bcgsc.ca	37	17	76695035	76695035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYTH1	NM_017456	exon8	c.T566C	p.L189P	AAGGAGAGGACGT	.	157	7	220	0	.	228	G	76695035	A	G	76695035	3	3	128	1	0	0	0	0	1	0	0	0	4203	304	11	2	654	2	CYTH1	17	76695035	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1223359	76695035	4500175	227	16121											
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76799931	76799931	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP36	NM_025090	exon16	c.G2346T	p.T782T	CAGCGCCGTCGAG	.	68	19	107	0	.	659	A	76799931	C	A	76799931	2	1	128	1	0	0	0	0	0	0	0	1	17064	639	23	1		1	USP36	17	76799931	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	104896	76799931	4395279	228	16122											
FASN	2194	hgsc.bcm.edu;bcgsc.ca	37	17	80041462	80041462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FASN	NM_004104	exon31	c.A5272G	p.R1758G	AGCACCTCACGCT	.	64	5	83	0	.	90	C	80041462	T	C	80041462	3	2	128	1	0	0	0	0	1	0	0	0	5683	1550	54	2	2315	2	FASN	17	80041462	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	3241531	80041462	1153748	229	16123											
SMCHD1	23347	hgsc.bcm.edu;bcgsc.ca	37	18	2726476	2726476	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMCHD1	NM_015295	exon22	c.T2727C	p.P909P	TCTGCCTGGCTTA	.	67	4	118	0	.	46	C	2726476	T	C	2726476	2	2	128	1	0	0	0	0	0	0	0	1	14788	1567	55	2		2	SMCHD1	18	2726476	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10		2726476	75350772	230	16124											
NOL4	8715	hgsc.bcm.edu;bcgsc.ca	37	18	31673528	31673528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOL4	NM_003787	exon5	c.A673G	p.M225V	CACTCATGTCAAA	.	72	4	103	0	.	93	C	31673528	T	C	31673528	3	2	128	1	0	0	0	0	1	0	0	0	10524	1464	51	2	1271	2	NOL4	18	31673528	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	28947052	31673528	46403720	231	16125											
SIGLEC15	284266	hgsc.bcm.edu;bcgsc.ca	37	18	43417043	43417043	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC15	NM_213602	exon2	c.A102G	p.T34T	CAACACAGAGGTG	.	71	4	77	0	.	90	G	43417043	A	G	43417043	2	3	128	1	0	0	0	0	0	0	0	1	14310	175	7	2		2	SIGLEC15	18	43417043	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	11743515	43417043	34660205	232	16126											
TXNL4A	10907	hgsc.bcm.edu;bcgsc.ca	37	18	77748286	77748286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXNL4A	NM_006701	exon1	c.C107A	p.P36H	CACGTAGGATCCC	.	67	5	122	0	.	90	T	77748286	G	T	77748286	3	4	128	1	0	0	0	0	1	0	0	0	16802	1000	35	3	333	3	TXNL4A	18	77748286	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	34331243	77748286	328962	233	16127											
MED16	10025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	890977	890977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED16	NM_005481	exon2	c.G155A	p.R52H	TCGCTGCGCAGGT	.	52	12	82	0	.	186	T	890977	C	T	890977	3	4	128	1	0	0	0	0	1	0	0	0	9434	768	27	1	2538	1	MED16	19	890977	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10		890977	58238006	234	16128											
TMPRSS9	360200	hgsc.bcm.edu;bcgsc.ca	37	19	2396594	2396594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMPRSS9	NM_182973	exon2	c.G200T	p.R67L	GAATCCGGTGGAC	.	89	5	131	0	.	91	T	2396594	G	T	2396594	3	4	128	1	0	0	0	0	1	0	0	0	16250	1116	39	1	206	1	TMPRSS9	19	2396594	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1505617	2396594	56732389	235	16129											
ZNF77	58492	hgsc.bcm.edu;bcgsc.ca	37	19	2933802	2933802	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF77	NM_021217	exon4	c.T1323C	p.C441C	TTTCCCACAATGC	.	65	4	117	0	.	91	G	2933802	A	G	2933802	2	3	128	1	0	0	0	0	0	0	0	1	18139	157	6	2		2	ZNF77	19	2933802	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	537208	2933802	56195181	236	16130											
ZNF558	148156	hgsc.bcm.edu;bcgsc.ca	37	19	8922642	8922642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF558	NM_144693	exon6	c.C524G	p.T175S	TCTCCAGTATGAA	.	79	4	134	0	.	90	C	8922642	G	C	8922642	3	2	128	1	0	0	0	0	1	0	0	0	17986	1029	36	4	688	4	ZNF558	19	8922642	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	5988840	8922642	50206341	237	16131											
ZNF177	7730	hgsc.bcm.edu;bcgsc.ca	37	19	9491942	9491942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF177	NM_001172651	exon6	c.A935G	p.Y312C	AGCCTTATGAGTG	.	91	4	165	0	.	91	G	9491942	A	G	9491942	3	3	128	1	0	0	0	0	1	0	0	0	17743	449	16	2	953	2	ZNF177	19	9491942	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	569300	9491942	49637041	238	16132											
AKAP8	10270	hgsc.bcm.edu;bcgsc.ca	37	19	15485443	15485443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP8	NM_005858	exon3	c.C62T	p.A21V	CCATATGCACCTT	.	94	5	177	0	.	290	A	15485443	G	A	15485443	3	1	128	1	0	0	0	0	1	0	0	0	457	1319	46	3	2064	3	AKAP8	19	15485443	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	5993501	15485443	43643540	239	16133											
ZNF93	81931	ucsc.edu;bcgsc.ca	37	19	20045260	20045260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF93	NM_031218	exon4	c.A1496G	p.H499R	CTAAACATAAGAA	.	32	4	36	0	.	91	G	20045260	A	G	20045260	3	3	128	1	0	0	0	0	1	0	0	0	18199	217	8	2	1510	2	ZNF93	19	20045260	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4559817	20045260	39083723	240	16134											
ZNF90	7643	hgsc.bcm.edu;bcgsc.ca	37	19	20229869	20229869	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF90	NM_007138	exon4	c.T1506C	p.I502I	GATAATTCACAGT	.	56	4	74	0	.	48	C	20229869	T	C	20229869	2	2	128	1	0	0	0	0	0	0	0	1	18196	1771	62	2		2	ZNF90	19	20229869	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	184609	20229869	38899114	241	16135											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22157552	22157552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF208	NM_007153	exon4	c.T284C	p.F95S	TTTTGGAAAGAAT	.	123	6	198	0	.	7	G	22157552	A	G	22157552	3	3	128	1	0	0	0	0	1	0	0	0	17763	246	9	2	3562	2	ZNF208	19	22157552	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1927683	22157552	36971431	242	16136											
LSR	51599	hgsc.bcm.edu;bcgsc.ca	37	19	35758316	35758316	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LSR	NM_205834	exon9	c.G1593A	p.R531R	CAGCCGGGACGAC	.	44	4	55	0	.	90	A	35758316	G	A	35758316	2	1	128	1	0	0	0	0	0	0	0	1	9064	1219	43	3		3	LSR	19	35758316	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	13600764	35758316	23370667	243	16137											
MLL4	8085	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	36222960	36222960	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLL4	NM_014727	exon27	c.T5589C	p.A1863A	GGGGGCTCGAATC	.	45	4	59	0	.	697	C	36222960	T	C	36222960	2	2	128	1	0	0	0	0	0	0	0	1	9623	1538	54	2		2	MLL4	19	36222960	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	464644	36222960	22906023	244	16138											
ZNF790	388536	hgsc.bcm.edu;bcgsc.ca	37	19	37309733	37309733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF790	NM_206894	exon5	c.C1513A	p.P505T	CATATGGCCTCTT	.	71	4	125	0	.	92	T	37309733	G	T	37309733	3	4	128	1	0	0	0	0	1	0	0	0	18159	1203	42	3	401	3	ZNF790	19	37309733	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1086773	37309733	21819250	245	16139											
SPINT2	10653	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38782590	38782590	+	Missense_Mutation	SNP	G	G	A	rs200600070		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPINT2	NM_021102	exon7	c.G703A	p.V235I	CGCACCGTCTGGA	.	150	45	254	1	.	90	A	38782590	G	A	38782590	3	1	128	1	0	0	0	0	1	0	0	0	15068	1145	40	1	729	1	SPINT2	19	38782590	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1472857	38782590	20346393	246	16140											
IRGC	56269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44222899	44222899	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IRGC	NM_019612	exon2	c.G189A	p.S63S	CGAGTCGGGCGCG	.	47	16	67	1	.	70	A	44222899	G	A	44222899	2	1	128	1	0	0	0	0	0	0	0	1	7838	1103	39	1		1	IRGC	19	44222899	Silent	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	5440309	44222899	14906084	247	16141											
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44739253	44739253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF227	NM_182490	exon6	c.A670C	p.K224Q	GAACCAAAACCCT	.	81	24	122	0	.	91	C	44739253	A	C	44739253	3	2	128	1	0	0	0	0	1	0	0	0	17778	15	1	5	684	5	ZNF227	19	44739253	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	516354	44739253	14389730	248	16142											
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50921165	50921165	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLD1	NM_002691	exon27	c.C3285T	p.L1095L	GCAGCTCCTGCGG	.	174	52	255	0	.	840	T	50921165	C	T	50921165	2	4	128	1	0	0	0	0	0	0	0	1	12190	842	30	3		3	POLD1	19	50921165	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	6181912	50921165	8207818	249	16143											
ZNF611	81856	hgsc.bcm.edu;bcgsc.ca	37	19	53208496	53208496	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF611	NM_030972	exon7	c.T1812C	p.S604S	CCTGCGACTGAAG	.	88	4	145	0	.	91	G	53208496	A	G	53208496	2	3	128	1	0	0	0	0	0	0	0	1	18034	272	10	2		2	ZNF611	19	53208496	Silent	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	2287331	53208496	5920487	250	16144											
ZNF665	79788	hgsc.bcm.edu;bcgsc.ca	37	19	53667902	53667902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF665	NM_024733	exon4	c.C1841T	p.A614V	TGATTTGCAAGAT	.	98	6	139	0	.	70	A	53667902	G	A	53667902	3	1	128	1	0	0	0	0	1	0	0	0	18070	1319	46	3	199	3	ZNF665	19	53667902	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	459406	53667902	5461081	251	16145											
ZNF845	91664	hgsc.bcm.edu;bcgsc.ca	37	19	53855322	53855322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_138374	exon4	c.A1394G	p.K465R	GAGAGAAACCTTA	.	68	4	120	0	.	.	G	53855322	A	G	53855322	3	3	128	1	0	0	0	0	1	0	0	0	18188	14	1	2	1404	2	ZNF845	19	53855322	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	187420	53855322	5273661	252	16146											
PTPRH	5794	hgsc.bcm.edu;bcgsc.ca	37	19	55708079	55708079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPRH	NM_002842	exon10	c.C2068A	p.Q690K	CTCCCTGGGGGCA	.	75	4	110	0	.	138	T	55708079	G	T	55708079	3	4	128	1	0	0	0	0	1	0	0	0	12803	1357	47	3	1323	3	PTPRH	19	55708079	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	1852757	55708079	3420904	253	16147											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56565058	56565058	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP5	NM_153447	exon13	c.C3183A	p.I1061I	TGTGATCTCGAGG	.	89	20	148	0	.	162	A	56565058	C	A	56565058	2	1	128	1	0	0	0	0	0	0	0	1	10480	903	32	3		3	NLRP5	19	56565058	Silent	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	856979	56565058	2563925	254	16148											
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58438372	58438372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF418	NM_133460	exon4	c.A1177G	p.T393A	CTCTAGTGTGAAC	.	103	8	155	0	.	90	C	58438372	T	C	58438372	3	2	128	1	0	0	0	0	1	0	0	0	17892	1696	59	2	857	2	ZNF418	19	58438372	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	1873314	58438372	690611	255	16149											
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2593953	2593953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMC2	NM_080751	exon14	c.C1857G	p.D619E	CTGGGACTTGGAG	.	313	68	513	0	.	93	G	2593953	C	G	2593953	3	3	128	1	0	0	0	0	1	0	0	0	15982	564	20	4	1911	4	TMC2	20	2593953	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10		2593953	60431567	256	16150											
ABHD12	26090	hgsc.bcm.edu;bcgsc.ca	37	20	25284191	25284191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABHD12	NM_001042472	exon11	c.A1024G	p.R342G	CCTTTCTGCCAAG	.	35	4	38	0	.	91	C	25284191	T	C	25284191	3	2	128	1	0	0	0	0	1	0	0	0	76	1588	55	2	246	2	ABHD12	20	25284191	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	22690238	25284191	37741329	257	16151											
PABPC1L	80336	hgsc.bcm.edu;bcgsc.ca	37	20	43552887	43552887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PABPC1L	NM_001124756	exon7	c.C962T	p.T321I	TAATTACCAGTGC	.	44	4	63	0	.	47	T	43552887	C	T	43552887	3	4	128	1	0	0	0	0	1	0	0	0	11364	507	18	3	988	3	PABPC1L	20	43552887	Missense_Mutation	SNP	C	TCGA-ES-A2HT-01A-12D-A183-10	18268696	43552887	19472633	258	16152											
CABIN1	23523	hgsc.bcm.edu;bcgsc.ca	37	22	24455827	24455827	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CABIN1	NM_001201429	exon10	c.1249+1G>A	.	AATCTGGTAGGAA	.	72	4	132	0	.	94	A	24455827	G	A	24455827	5	1	128	1	0	0	0	0	0	0	1	0	2528	1275	44	3	1438	3	CABIN1	22	24455827	Splice_Site	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10		24455827	26848739	259	16153											
HORMAD2	150280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30517682	30517682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152510	exon9	c.G472T	p.V158F	GCCAGTGTTCTAC	.	226	60	301	0	.	.	T	30517682	G	T	30517682	3	4	128	1	0	0	0	0	1	0	0	0	7287	1377	48	3	502	3	HORMAD2	22	30517682	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	6061855	30517682	20786884	260	16154											
EIF4ENIF1	56478	hgsc.bcm.edu;bcgsc.ca	37	22	31851919	31851919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF4ENIF1	NM_019843	exon8	c.T1018C	p.W340R	AGAACCACCTACT	.	104	5	129	0	.	91	G	31851919	A	G	31851919	3	3	128	1	0	0	0	0	1	0	0	0	5035	159	6	2	1990	2	EIF4ENIF1	22	31851919	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	1334237	31851919	19452647	261	16155											
SLC25A17	10478	hgsc.bcm.edu;bcgsc.ca	37	22	41173121	41173121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A17	NM_006358	exon7	c.T616C	p.F206L	TGATGAACACATC	.	63	5	103	0	.	90	G	41173121	A	G	41173121	3	3	128	1	0	0	0	0	1	0	0	0	14479	43	2	2	319	2	SLC25A17	22	41173121	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	9321202	41173121	10131445	262	16156											
PKDREJ	10343	hgsc.bcm.edu;bcgsc.ca	37	22	46656423	46656423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PKDREJ	NM_006071	exon1	c.A2797G	p.M933V	CTGTCATTCTGAA	.	84	6	114	0	.	156	C	46656423	T	C	46656423	3	2	128	1	0	0	0	0	1	0	0	0	11970	1493	52	2	3968	2	PKDREJ	22	46656423	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	5483302	46656423	4648143	263	16157											
GTSE1	51512	hgsc.bcm.edu;bcgsc.ca	37	22	46704325	46704325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GTSE1	NM_016426	exon4	c.A247G	p.T83A	TTGCCCACATCTG	.	80	4	128	0	.	187	G	46704325	A	G	46704325	3	3	128	1	0	0	0	0	1	0	0	0	6885	159	6	2	257	2	GTSE1	22	46704325	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	47902	46704325	4600241	264	16158											
CPT1B	1375	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	51011460	51011460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPT1B	NM_001145135	exon11	c.T1196C	p.F399S	CTAAAGAAGGCCT	.	42	4	62	0	.	116	G	51011460	A	G	51011460	3	3	128	1	0	0	0	0	1	0	0	0	3832	246	9	2	1158	2	CPT1B	22	51011460	Missense_Mutation	SNP	A	TCGA-ES-A2HT-01A-12D-A183-10	4307135	51011460	293106	265	16159											
ATP7A	538	hgsc.bcm.edu;bcgsc.ca	37	X	77258577	77258577	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATP7A	NM_000052	exon6	c.T1551C	p.Y517Y	AATATATTCTATA	.	82	4	113	0	.	130	C	77258577	T	C	77258577	2	2	128	1	0	0	0	0	0	0	0	1	1190	1500	52	2		2	ATP7A	23	77258577	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10		77258577	78011983	266	16160											
SRPX2	27286	hgsc.bcm.edu;bcgsc.ca	37	X	99901349	99901349	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SRPX2	NM_014467	exon2	c.T30C	p.A10A	AGGAGCTCTCTTT	.	71	4	49	0	.	132	C	99901349	T	C	99901349	2	2	128	1	0	0	0	0	0	0	0	1	15164	1538	54	2		2	SRPX2	23	99901349	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	22642772	99901349	55369211	267	16161											
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	117053530	117053536	+	Frame_Shift_Del	DEL	TGTAGGA	TGTAGGA	-	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	TGTAGGA	TGTAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL13	NM_001168299	exon5	c.527_533del	p.176_178del	AGAATCTGTAGGA	.	184	0	343	0	.	556	-	117053536	TGTAGGA	-	117053530	7	5	128	1	0	1	0	1	0	0	0	0	8369	1580	55	0	1459	0	KLHL13	23	117053530	Frame_Shift_Del	DEL	TGTAGGA	TCGA-ES-A2HT-01A-12D-A183-10	17152181	117053530	38217030	268	16162											
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	130408626	130408626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF1	NM_001170961	exon18	c.A3713T	p.Y1238F	TCAGGGTAGGCCT	.	140	11	187	0	.	133	A	130408626	T	A	130408626	3	1	128	1	0	0	0	0	1	0	0	0	7596	1638	57	4	324	4	IGSF1	23	130408626	Missense_Mutation	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	13355096	130408626	24861934	269	16163											
PLAC1	10761	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	133700150	133700150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLAC1	NM_021796	exon3	c.C563T	p.P188L	TGCAGAGGTTGAG	.	127	86	96	1	.	131	A	133700150	G	A	133700150	3	1	128	1	0	0	0	0	1	0	0	0	12012	1000	35	3	79	3	PLAC1	23	133700150	Missense_Mutation	SNP	G	TCGA-ES-A2HT-01A-12D-A183-10	3291524	133700150	21570410	270	16164											
IKBKG	8517	hgsc.bcm.edu;bcgsc.ca	37	X	153770550	153770550	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IKBKG	NM_001099856	exon1	c.T72C	p.S24S	TCCCAGTCTCTTC	.	79	5	112	0	.	636	C	153770550	T	C	153770550	2	2	128	1	0	0	0	0	0	0	0	1	7613	1664	58	2		2	IKBKG	23	153770550	Silent	SNP	T	TCGA-ES-A2HT-01A-12D-A183-10	20070400	153770550	1500010	271	16165											
MORN1	79906	ucsc.edu;bcgsc.ca	37	1	2317315	2317315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MORN1	NM_024848	exon5	c.G380T	p.R127L	CCATCCCGGTCCA	.	34	4	78	1	.	92	A	2317315	C	A	2317315	3	1	129	1	0	0	0	0	1	0	0	0	9708	652	23	1	1153	1	MORN1	1	2317315	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		2317315	246933306	1	16166											
PLOD1	5351	ucsc.edu;bcgsc.ca	37	1	12027091	12027091	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLOD1	NM_000302	exon16	c.T1698C	p.C566C	GGCCTGTGATGAG	.	42	4	99	0	.	155	C	12027091	T	C	12027091	2	2	129	1	0	0	0	0	0	0	0	1	12101	1702	59	2		2	PLOD1	1	12027091	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	9709776	12027091	237223530	2	16167											
VPS13D	55187	ucsc.edu;bcgsc.ca	37	1	12379555	12379555	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	VPS13D	NM_015378	exon32	c.T7416C	p.G2472G	TCCAGGTACGGAG	.	41	5	54	0	.	95	C	12379555	T	C	12379555	2	2	129	1	0	0	0	0	0	0	0	1	17189	1652	57	2		2	VPS13D	1	12379555	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	352464	12379555	236871066	3	16168											
ARHGEF10L	55160	ucsc.edu;bcgsc.ca	37	1	17907119	17907119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ARHGEF10L	NM_018125	exon2	c.C29A	p.P10H	CACAGCCTGCCAT	.	23	4	49	0	.	292	A	17907119	C	A	17907119	3	1	129	1	0	0	0	0	1	0	0	0	895	681	24	3	31	3	ARHGEF10L	1	17907119	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	5527564	17907119	231343502	4	16169											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27101342	27101342	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	ARID1A,NS,carcinoma,0	ARID1A	NM_006015	exon18	c.G4624T	p.E1542X	AACCACGAAGGCT	.	50	36	79	0	.	584	T	27101342	G	T	27101342	4	4	129	1	0	0	0	0	0	1	0	0	913	1059	37	1	4694	1	ARID1A	1	27101342	Nonsense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	9194223	27101342	222149279	5	16170											
SESN2	83667	ucsc.edu;bcgsc.ca	37	1	28599950	28599950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SESN2	NM_031459	exon6	c.A832G	p.T278A	GAGGGGACGTCCC	.	33	4	59	0	.	230	G	28599950	A	G	28599950	3	3	129	1	0	0	0	0	1	0	0	0	14125	275	10	2	854	2	SESN2	1	28599950	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	1498608	28599950	220650671	6	16171											
AKIRIN1	79647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39463936	39463936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKIRIN1	NM_024595	exon2	c.C314T	p.S105L	GTGCTTCGGAAAG	.	38	24	68	0	.	90	T	39463936	C	T	39463936	3	4	129	1	0	0	0	0	1	0	0	0	461	893	31	1	320	1	AKIRIN1	1	39463936	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	10863986	39463936	209786685	7	16172											
BEST4	266675	ucsc.edu;bcgsc.ca	37	1	45253103	45253103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BEST4	NM_153274	exon2	c.C188A	p.A63D	ACCTGAGCATACA	.	35	4	63	0	.	91	T	45253103	G	T	45253103	3	4	129	1	0	0	0	0	1	0	0	0	1407	971	34	3	1265	3	BEST4	1	45253103	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	5789167	45253103	203997518	8	16173											
MUTYH	4595	ucsc.edu;bcgsc.ca	37	1	45798502	45798502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MUTYH	NM_001128425	exon7	c.T509C	p.V170A	TGATTCACCTCCT	.	50	5	91	1	.	1083	G	45798502	A	G	45798502	3	3	129	1	0	0	0	0	1	0	0	0	9993	159	6	2	1180	2	MUTYH	1	45798502	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	545399	45798502	203452119	9	16174											
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	107599362	107599362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRMT6	NM_018137	exon1	c.C25T	p.L9F	AGAAAGCTTGAGT	.	34	14	37	0	.	90	T	107599362	C	T	107599362	3	4	129	1	0	0	0	0	1	0	0	0	12540	797	28	3	27	3	PRMT6	1	107599362	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	61800860	107599362	141651259	10	16175											
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109242492	109242492	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRPF38B	NM_018061	exon6	c.T1491C	p.S497S	AAAATCTAGAAAG	.	206	75	183	0	.	90	C	109242492	T	C	109242492	2	2	129	1	0	0	0	0	0	0	0	1	12568	1509	53	2		2	PRPF38B	1	109242492	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1643130	109242492	140008129	11	16176											
TNFAIP8L2	79626	ucsc.edu;bcgsc.ca	37	1	151131649	151131649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TNFAIP8L2	NM_024575	exon2	c.T476C	p.L159P	CGGCCCTCTATGG	.	32	4	23	0	.	90	C	151131649	T	C	151131649	3	2	129	1	0	0	0	0	1	0	0	0	16275	1551	54	2	478	2	TNFAIP8L2	1	151131649	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	41889157	151131649	98118972	12	16177											
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154042865	154042865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NUP210L	NM_001159484	exon17	c.T2438C	p.F813S	GAACTGAAATTAT	.	142	47	121	0	.	77	G	154042865	A	G	154042865	3	3	129	1	0	0	0	0	1	0	0	0	10761	246	9	2	3324	2	NUP210L	1	154042865	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	2911216	154042865	95207756	13	16178											
RAB25	57111	ucsc.edu;bcgsc.ca	37	1	156035736	156035736	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RAB25	NM_020387	exon2	c.C78A	p.T26T	GAAGACCAATCTA	.	44	5	37	0	.	227	A	156035736	C	A	156035736	2	1	129	1	0	0	0	0	0	0	0	1	12912	581	21	3		3	RAB25	1	156035736	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	1992871	156035736	93214885	14	16179											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156106182	156106183	+	Missense_Mutation	DNP	GG	GG	TA	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	.	.	.	p.D446N	GGAGGTGGATGAG	.	68	35	53	0	.	.	TA	156106183	GG	TA	156106182	3	4	129	1	0	0	0	0	1	0	0	0	8848	1335	47	3	1361	3	LMNA	1	156106182	Missense_Mutation	DNP	GG	TCGA-FV-A23B-01A-11D-A16V-10	70446	156106182	93144439	15	16180											
NUF2	83540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163325198	163325198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NUF2	NM_145697	exon14	c.A1334G	p.Y445C	ACTCCTATGCTAA	.	272	65	207	0	.	231	G	163325198	A	G	163325198	3	3	129	1	0	0	0	0	1	0	0	0	10747	449	16	2	1384	2	NUF2	1	163325198	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	7219016	163325198	85925423	16	16181											
ADCY10	55811	hgsc.bcm.edu;bcgsc.ca	37	1	167802265	167802267	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADCY10	NM_018417	exon25	c.3551_3553del	p.1184_1185del	CATAATGAAAGTG	.	122	28	103	0	.	493	-	167802267	GAA	-	167802265	7	5	129	1	0	1	0	1	0	0	0	0	293	1290	45	0	1315	0	ADCY10	1	167802265	In_Frame_Del	DEL	GAA	TCGA-FV-A23B-01A-11D-A16V-10	4477067	167802265	81448356	17	16182											
RC3H1	149041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173912722	173912722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RC3H1	NM_172071	exon17	c.A2993G	p.E998G	TTTGCCTCCCTCT	.	54	6	35	0	.	92	C	173912722	T	C	173912722	3	2	129	1	0	0	0	0	1	0	0	0	13166	1551	54	2	420	2	RC3H1	1	173912722	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	6110457	173912722	75337899	18	16183											
SLC30A1	7779	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	211751520	211751520	+	Silent	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC30A1	NM_021194	exon1	c.C435G	p.G145G	GCCGTGGCCGGAG	.	19	9	30	0	.	93	C	211751520	G	C	211751520	2	2	129	1	0	0	0	0	0	0	0	1	14553	1190	42	4		4	SLC30A1	1	211751520	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	37838798	211751520	37499101	19	16184											
NTSR2	23620	ucsc.edu;bcgsc.ca	37	2	11798785	11798785	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NTSR2	NM_012344	exon4	c.A1053G	p.S351S	CACAGCTGAGCTG	.	46	4	60	1	.	946	C	11798785	T	C	11798785	2	2	129	1	0	0	0	0	0	0	0	1	10711	1567	55	2		2	NTSR2	2	11798785	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10		11798785	231400588	20	16185											
GPR113	165082	ucsc.edu;bcgsc.ca	37	2	26536706	26536706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPR113	NM_001145168	exon8	c.G1198A	p.D400N	TGGTGTCAGCCAT	.	43	4	41	0	.	94	T	26536706	C	T	26536706	3	4	129	1	0	0	0	0	1	0	0	0	6630	826	29	3	2154	3	GPR113	2	26536706	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	14737921	26536706	216662667	21	16186											
GCKR	2646	ucsc.edu;bcgsc.ca	37	2	27728690	27728690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GCKR	NM_001486	exon10	c.G856T	p.A286S	GGCATTGCAGCAT	.	24	4	27	0	.	92	T	27728690	G	T	27728690	3	4	129	1	0	0	0	0	1	0	0	0	6294	1319	46	3	894	3	GCKR	2	27728690	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1191984	27728690	215470683	22	16187											
GCKR	2646	ucsc.edu;bcgsc.ca	37	2	27741799	27741799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GCKR	NM_001486	exon17	c.C1567A	p.L523M	GCCATGCTGCAGG	.	37	4	55	0	.	92	A	27741799	C	A	27741799	3	1	129	1	0	0	0	0	1	0	0	0	6294	796	28	3	1633	3	GCKR	2	27741799	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	13109	27741799	215457574	23	16188											
FOSL2	2355	ucsc.edu;bcgsc.ca	37	2	28626982	28626982	+	Silent	SNP	G	G	T	rs200198308		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FOSL2	NM_005253	exon2	c.G111T	p.R37R	ATTCCGGGTAGAT	.	46	5	33	0	G|0.999;T|0.001	712	T	28626982	G	T	28626982	2	4	129	1	0	0	0	0	0	0	0	1	5988	1219	43	3		3	FOSL2	2	28626982	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	885183	28626982	214572391	24	16189											
SIX2	10736	ucsc.edu;bcgsc.ca	37	2	45235966	45235966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SIX2	NM_016932	exon1	c.C284A	p.A95E	TTCTCCGCCTCGA	.	46	4	41	0	.	91	T	45235966	G	T	45235966	3	4	129	1	0	0	0	0	1	0	0	0	14347	1087	38	1	599	1	SIX2	2	45235966	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	16608984	45235966	197963407	25	16190											
FBXO11	80204	ucsc.edu;bcgsc.ca	37	2	48035495	48035495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXO11	NM_001190274	exon22	c.A2627G	p.H876R	ACATCATGTCCCT	.	48	4	76	0	.	659	C	48035495	T	C	48035495	3	2	129	1	0	0	0	0	1	0	0	0	5727	1464	51	2	164	2	FBXO11	2	48035495	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	2799529	48035495	195163878	26	16191											
NRXN1	9378	ucsc.edu;bcgsc.ca	37	2	50847255	50847255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NRXN1	NM_001135659	exon9	c.G1345A	p.G449R	CAGACCCCAGCAT	.	38	4	51	0	.	92	T	50847255	C	T	50847255	3	4	129	1	0	0	0	0	1	0	0	0	10665	623	22	3	3625	3	NRXN1	2	50847255	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	2811760	50847255	192352118	27	16192											
TET3	200424	ucsc.edu;bcgsc.ca	37	2	74317138	74317138	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_144993	exon5	c.T2598C	p.P866P	GACACCTCGCAAG	.	36	4	49	0	.	.	C	74317138	T	C	74317138	2	2	129	1	0	0	0	0	0	0	0	1	15768	1538	54	2		2	TET3	2	74317138	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	23469883	74317138	168882235	28	16193											
CHST10	9486	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101014572	101014572	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CHST10	NM_004854	exon5	c.C225T	p.L75L	CTGAACGAGCTGG	.	29	18	25	0	.	91	A	101014572	G	A	101014572	2	1	129	1	0	0	0	0	0	0	0	1	3398	1045	37	1		1	CHST10	2	101014572	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	26697434	101014572	142184801	29	16194											
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102988510	102988510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IL18R1	NM_003855	exon3	c.A400C	p.K134Q	GTTAAAAAATTTT	.	178	65	190	0	.	93	C	102988510	A	C	102988510	3	2	129	1	0	0	0	0	1	0	0	0	7647	15	1	5	410	5	IL18R1	2	102988510	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	1973938	102988510	140210863	30	16195											
UGGT1	56886	ucsc.edu;bcgsc.ca	37	2	128918817	128918817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	UGGT1	NM_020120	exon25	c.C2800A	p.Q934K	CATATTCAACAGC	.	35	4	40	0	.	91	A	128918817	C	A	128918817	3	1	129	1	0	0	0	0	1	0	0	0	16938	827	29	3	2898	3	UGGT1	2	128918817	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	25930307	128918817	114280556	31	16196											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800964	185800964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF804A	NM_194250	exon4	c.C841T	p.P281S	CATCCACCAGAGG	.	46	16	24	0	.	163	T	185800964	C	T	185800964	3	4	129	1	0	0	0	0	1	0	0	0	18167	507	18	3	855	3	ZNF804A	2	185800964	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	56882147	185800964	57398409	32	16197											
PLCL1	5334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950752	198950752	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLCL1	NM_006226	exon2	c.G2511A	p.E837E	CATGGAGCACGTA	.	112	47	127	1	.	228	A	198950752	G	A	198950752	2	1	129	1	0	0	0	0	0	0	0	1	12039	962	34	3		3	PLCL1	2	198950752	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	13149788	198950752	44248621	33	16198											
AMT	275	ucsc.edu;bcgsc.ca	37	3	49459665	49459665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AMT	NM_001164712	exon2	c.G130A	p.A44T	CGTGGGCCAGGTG	.	27	5	40	0	.	91	T	49459665	C	T	49459665	3	4	129	1	0	0	0	0	1	0	0	0	589	739	26	3	1141	3	AMT	3	49459665	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		49459665	148562765	34	16199											
MST1	4485	ucsc.edu;bcgsc.ca	37	3	49722242	49722242	+	Silent	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MST1	NM_020998	exon15	c.A1698T	p.L566L	CCGCTGTAGGCTT	.	56	5	70	0	.	278	A	49722242	T	A	49722242	2	1	129	1	0	0	0	0	0	0	0	1	9890	1625	57	4		4	MST1	3	49722242	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	262577	49722242	148300188	35	16200											
STXBP5L	9515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120876465	120876465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STXBP5L	NM_014980	exon9	c.A868G	p.I290V	ACCACAATTCCAC	.	51	12	70	0	.	77	G	120876465	A	G	120876465	3	3	129	1	0	0	0	0	1	0	0	0	15356	101	4	2	898	2	STXBP5L	3	120876465	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	71154223	120876465	77145965	36	16201											
HEG1	57493	ucsc.edu;bcgsc.ca	37	3	124724109	124724109	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HEG1	NM_020733	exon9	c.G3297T	p.T1099T	ACTTACCGTTTTG	.	43	4	34	0	.	70	A	124724109	C	A	124724109	2	1	129	1	0	0	0	0	0	0	0	1	7044	666	23	1		1	HEG1	3	124724109	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	3847644	124724109	73298321	37	16202											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130282231	130282231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL6A6	NM_001102608	exon2	c.G384T	p.K128N	AGACAAGAAACAG	.	75	36	86	0	.	76	T	130282231	G	T	130282231	3	4	129	1	0	0	0	0	1	0	0	0	3703	933	33	3	390	3	COL6A6	3	130282231	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	5558122	130282231	67740199	38	16203											
PIK3R4	30849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130427320	130427320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PIK3R4	NM_014602	exon10	c.A2348T	p.E783V	TCTTCCTCTTCCT	.	200	78	163	0	.	1471	A	130427320	T	A	130427320	3	1	129	1	0	0	0	0	1	0	0	0	11921	1551	54	4	1772	4	PIK3R4	3	130427320	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	145089	130427320	67595110	39	16204											
MFI2	4241	ucsc.edu;bcgsc.ca	37	3	196743126	196743126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MFI2	NM_005929	exon8	c.A1015G	p.T339A	CATAGGTCTGTGT	.	39	4	35	0	.	90	C	196743126	T	C	196743126	3	2	129	1	0	0	0	0	1	0	0	0	9522	1667	58	2	1237	2	MFI2	3	196743126	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	66315806	196743126	1279304	40	16205											
SORCS2	57537	ucsc.edu;bcgsc.ca	37	4	7730138	7730138	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SORCS2	NM_020777	exon22	c.C2931A	p.T977T	CAACACCCCTGAG	.	35	4	30	0	.	91	A	7730138	C	A	7730138	2	1	129	1	0	0	0	0	0	0	0	1	14931	610	22	3		3	SORCS2	4	7730138	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		7730138	183424138	41	16206											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56744128	56744128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EXOC1	NM_018261	exon9	c.A1120G	p.T374A	GAACTGACTTTAC	.	71	24	60	0	.	950	G	56744128	A	G	56744128	3	3	129	1	0	0	0	0	1	0	0	0	5301	275	10	2	1150	2	EXOC1	4	56744128	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	49013990	56744128	134410148	42	16207											
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68396566	68396566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CENPC1	NM_001812	exon5	c.G298T	p.V100F	CTACAACAAACTG	.	66	18	57	0	.	205	A	68396566	C	A	68396566	3	1	129	1	0	0	0	0	1	0	0	0	3229	478	17	3	2593	3	CENPC1	4	68396566	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	11652438	68396566	122757710	43	16208											
SLC4A4	8671	broad.mit.edu;bcgsc.ca	37	4	72423587	72423587	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC4A4	NM_001098484	exon22	c.C2922A	p.I974I	TGCTATCATTTTT	.	90	7	91	0	.	95	A	72423587	C	A	72423587	2	1	129	1	0	0	0	0	0	0	0	1	14656	816	29	3		3	SLC4A4	4	72423587	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	4027021	72423587	118730689	44	16209											
PF4V1	5197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74719566	74719566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PF4V1	NM_002620	exon2	c.G167A	p.R56K	GTCCCAGGCACAT	.	62	23	58	0	.	90	A	74719566	G	A	74719566	3	1	129	1	0	0	0	0	1	0	0	0	11753	1000	35	3	173	3	PF4V1	4	74719566	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2295979	74719566	116434710	45	16210											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76551045	76551045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDKL2	NM_003948	exon2	c.T128C	p.M43T	TTAACCATTTTGT	.	133	54	104	0	.	454	G	76551045	A	G	76551045	3	3	129	1	0	0	0	0	1	0	0	0	3154	217	8	2	1393	2	CDKL2	4	76551045	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	1831479	76551045	114603231	46	16211											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85663040	85663040	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	WDFY3	NM_014991	exon38	c.A6108G	p.G2036G	GTAGCTTCCTCCA	.	93	38	86	0	.	93	C	85663040	T	C	85663040	2	2	129	1	0	0	0	0	0	0	0	1	17267	1770	62	2		2	WDFY3	4	85663040	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	9111995	85663040	105491236	47	16212											
PTPN13	5783	ucsc.edu;bcgsc.ca	37	4	87684048	87684048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PTPN13	NM_080683	exon24	c.A3722G	p.E1241G	TGCGGGAAGGAAG	.	39	4	55	0	.	230	G	87684048	A	G	87684048	3	3	129	1	0	0	0	0	1	0	0	0	12782	246	9	2	3812	2	PTPN13	4	87684048	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	2021008	87684048	103470228	48	16213											
SLC39A8	64116	ucsc.edu;bcgsc.ca	37	4	103180632	103180632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC39A8	NM_001135147	exon10	c.C1306T	p.H436Y	GTAAATGAAGTTG	.	56	5	54	0	.	90	A	103180632	G	A	103180632	3	1	129	1	0	0	0	0	1	0	0	0	14624	1290	45	3	36	3	SLC39A8	4	103180632	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	15496584	103180632	87973644	49	16214											
NFKB1	4790	ucsc.edu;bcgsc.ca	37	4	103528881	103528881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NFKB1	NM_003998	exon19	c.A2200G	p.R734G	TCCACCAGGCTGG	.	22	4	40	0	.	912	G	103528881	A	G	103528881	3	3	129	1	0	0	0	0	1	0	0	0	10375	179	7	2	2270	2	NFKB1	4	103528881	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	348249	103528881	87625395	50	16215											
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	118975959	118975959	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NDST3	NM_004784	exon2	c.A894G	p.T298T	GCTGACATTGTCC	.	60	23	69	0	.	153	G	118975959	A	G	118975959	2	3	129	1	0	0	0	0	0	0	0	1	10257	204	8	2		2	NDST3	4	118975959	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	15447078	118975959	72178317	51	16216											
ITGA1	3672	broad.mit.edu;mdanderson.org	37	5	52084218	52084218	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ITGA1	NM_181501	exon1	c.G31C	p.V11L	CCAGGGGTCGCTG	.	14	6	16	0	.	228	C	52084218	G	C	52084218	3	2	129	1	0	0	0	0	1	0	0	0	7872	1261	44	4	33	4	ITGA1	5	52084218	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		52084218	128831042	52	16217											
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55202077	55202077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IL31RA	NM_001242637	exon9	c.G1213C	p.E405Q	TCCTGGGAATCTG	.	54	25	57	0	.	91	C	55202077	G	C	55202077	3	2	129	1	0	0	0	0	1	0	0	0	7691	1175	41	4	1247	4	IL31RA	5	55202077	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	3117859	55202077	125713183	53	16218											
HTR1A	3350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63256420	63256420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HTR1A	NM_000524	exon1	c.A1127T	p.H376L	GGCATGTGGCAGC	.	63	24	61	0	.	94	A	63256420	T	A	63256420	3	1	129	1	0	0	0	0	1	0	0	0	7436	1696	59	4	144	4	HTR1A	5	63256420	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	8054343	63256420	117658840	54	16219											
MTX3	345778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79287047	79287047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001010891	exon1	c.G15T	p.L5F	GAGTTCCAAGGGG	.	26	14	27	0	.	.	A	79287047	C	A	79287047	3	1	129	1	0	0	0	0	1	0	0	0	9969	593	21	3	959	3	MTX3	5	79287047	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	16030627	79287047	101628213	55	16220											
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137481515	137481515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BRD8	NM_139199	exon24	c.A3331G	p.T1111A	GGAGAGTCTTCTT	.	54	5	66	0	.	91	C	137481515	T	C	137481515	3	2	129	1	0	0	0	0	1	0	0	0	1506	1667	58	2	392	2	BRD8	5	137481515	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	58194468	137481515	43433745	56	16221											
MATR3	9782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	138643894	138643894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MATR3	NM_018834	exon2	c.T790C	p.S264P	GAGAGATCTCTCT	.	79	35	52	1	.	91	C	138643894	T	C	138643894	3	2	129	1	0	0	0	0	1	0	0	0	9337	1435	50	2	792	2	MATR3	5	138643894	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1162379	138643894	42271366	57	16222											
ANKHD1	54882	hgsc.bcm.edu;bcgsc.ca	37	5	139903797	139903798	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ANKHD1	NM_017747	exon25	c.4464_4465insG	p.D1488fs	AGAGGATGAAGAT	.	478	160	410	0	.	185	G	139903798	-	G	139903797	7	5	129	1	0	1	1	0	0	0	0	0	628	1461	51	0	4668	0	ANKHD1	5	139903797	Frame_Shift_Ins	INS	-	TCGA-FV-A23B-01A-11D-A16V-10	1259903	139903797	41011463	58	16223											
FBXW11	23291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	171296743	171296743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXW11	NM_012300	exon11	c.G1457A	p.R486H	AATGTGCGCAAAC	.	46	22	48	0	.	272	T	171296743	C	T	171296743	3	4	129	1	0	0	0	0	1	0	0	0	5764	768	27	1	179	1	FBXW11	5	171296743	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	31392946	171296743	9618517	59	16224											
HK3	3101	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176317835	176317835	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HK3	NM_002115	exon5	c.G522A	p.T174T	CAAGCCCGTCTGG	.	23	7	35	0	.	294	T	176317835	C	T	176317835	2	4	129	1	0	0	0	0	0	0	0	1	7192	639	23	1		1	HK3	5	176317835	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	5021092	176317835	4597425	60	16225											
HLA-B	3106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31324160	31324161	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HLA-B	NM_005514	exon3	c.403_404insT	p.R135fs	GCCCGCGGAGGAG	.	40	13	46	0	.	90	A	31324161	-	A	31324160	7	5	129	1	0	1	1	0	0	0	0	0	7196	1116	39	0	705	0	HLA-B	6	31324160	Frame_Shift_Ins	INS	-	TCGA-FV-A23B-01A-11D-A16V-10		31324160	139790907	61	16226											
HSPA1L	3305	ucsc.edu;bcgsc.ca	37	6	31778553	31778553	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HSPA1L	NM_005527	exon2	c.T1197C	p.A399A	CAGGGGAGCCACG	.	42	5	47	0	.	230	G	31778553	A	G	31778553	2	3	129	1	0	0	0	0	0	0	0	1	7410	291	11	2		2	HSPA1L	6	31778553	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	454393	31778553	139336514	62	16227											
COL11A2	1302	ucsc.edu;bcgsc.ca	37	6	33146492	33146492	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL11A2	NM_080680	exon18	c.T1683C	p.D561D	GAGTCCATCAAAA	.	30	4	43	0	.	95	G	33146492	A	G	33146492	2	3	129	1	0	0	0	0	0	0	0	1	3668	214	8	2		2	COL11A2	6	33146492	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	1367939	33146492	137968575	63	16228											
CAPN11	11131	ucsc.edu;bcgsc.ca	37	6	44150676	44150676	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CAPN11	NM_007058	exon20	c.1939-2A>G	.	CTCTTCAGGACAT	.	42	4	49	0	.	136	G	44150676	A	G	44150676	5	3	129	1	0	0	0	0	0	0	1	0	2624	202	7	2	2015	2	CAPN11	6	44150676	Splice_Site	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	11004184	44150676	126964391	64	16229											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75855116	75855116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL12A1	NM_004370	exon25	c.C4616T	p.T1539M	TACTCCGTGTTGG	.	24	17	34	0	.	142	A	75855116	G	A	75855116	3	1	129	1	0	0	0	0	1	0	0	0	3669	1145	40	1	4743	1	COL12A1	6	75855116	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	31704440	75855116	95259951	65	16230											
SENP6	26054	ucsc.edu;bcgsc.ca	37	6	76376473	76376473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SENP6	NM_015571	exon10	c.G1040T	p.R347I	CTAACAGAAGAGA	.	34	4	39	0	.	660	T	76376473	G	T	76376473	3	4	129	1	0	0	0	0	1	0	0	0	14050	942	33	3	1078	3	SENP6	6	76376473	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	521357	76376473	94738594	66	16231											
ROS1	6098	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117718163	117718163	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ROS1	NM_002944	exon7	c.C694T	p.L232L	TGATCAGCCTTAA	.	51	39	113	1	.	1353	A	117718163	G	A	117718163	2	1	129	1	0	0	0	0	0	0	0	1	13531	962	34	3		3	ROS1	6	117718163	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	41341690	117718163	53396904	67	16232											
CLVS2	134829	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	123319163	123319163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CLVS2	NM_001010852	exon2	c.C241T	p.Q81X	CGGCAGCAGAACC	.	14	12	30	0	.	27	T	123319163	C	T	123319163	4	4	129	1	0	0	0	0	0	1	0	0	3572	711	25	3	243	3	CLVS2	6	123319163	Nonsense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	5601000	123319163	47795904	68	16233											
PLEKHG1	57480	ucsc.edu;bcgsc.ca	37	6	151152713	151152713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLEKHG1	NM_001029884	exon16	c.G2466A	p.M822I	GTCTATGCCTCAT	.	27	4	38	0	.	92	A	151152713	G	A	151152713	3	1	129	1	0	0	0	0	1	0	0	0	12068	1319	46	3	2520	3	PLEKHG1	6	151152713	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	27833550	151152713	19962354	69	16234											
AKAP12	9590	ucsc.edu;bcgsc.ca	37	6	151672032	151672032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKAP12	NM_005100	exon4	c.G2506A	p.A836T	ACAGGGGCCAACG	.	58	5	75	0	.	293	A	151672032	G	A	151672032	3	1	129	1	0	0	0	0	1	0	0	0	448	1203	42	3	2545	3	AKAP12	6	151672032	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	519319	151672032	19443035	70	16235											
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152697950	152697950	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SYNE1	NM_033071	exon57	c.A9128T	p.Y3043F	CCACTGTAGGTAC	.	35	4	47	0	.	607	A	152697950	T	A	152697950	3	1	129	1	0	0	0	0	1	0	0	0	15442	1638	57	4	17719	4	SYNE1	6	152697950	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1025918	152697950	18417117	71	16236											
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167438330	167438330	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FGFR1OP	NM_007045	exon9	c.A867G	p.L289L	CCCCTTAAAAAGT	.	30	23	80	0	.	683	G	167438330	A	G	167438330	2	3	129	1	0	0	0	0	0	0	0	1	5864	359	13	2		2	FGFR1OP	6	167438330	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	14740380	167438330	3676737	72	16237											
DLL1	28514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170592756	170592756	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DLL1	NM_005618	exon9	c.G1611A	p.E537E	CTGGCCCTCTAGC	.	22	11	36	0	.	659	T	170592756	C	T	170592756	2	4	129	1	0	0	0	0	0	0	0	1	4566	680	24	3		3	DLL1	6	170592756	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	3154426	170592756	522311	73	16238											
TNRC18	84629	ucsc.edu;bcgsc.ca	37	7	5364783	5364783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TNRC18	NM_001080495	exon20	c.C6244A	p.L2082M	CGGTCAGGGAGCT	.	47	4	56	0	.	46	T	5364783	G	T	5364783	3	4	129	1	0	0	0	0	1	0	0	0	16336	991	35	3	2706	3	TNRC18	7	5364783	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		5364783	153773880	74	16239											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48506582	48506582	+	Missense_Mutation	SNP	G	G	A	rs201934902		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ABCA13	NM_152701	exon44	c.G12845A	p.R4282H	TCACCCGTGTGCT	.	60	17	55	0	G|0.999;A|0.000	521	A	48506582	G	A	48506582	3	1	129	1	0	0	0	0	1	0	0	0	31	1145	40	1	12848	1	ABCA13	7	48506582	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	43141799	48506582	110632081	75	16240											
SLC26A4	5172	broad.mit.edu;bcgsc.ca	37	7	107315422	107315422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC26A4	NM_000441	exon6	c.A633G	p.I211M	ATTCATAGTGAGG	.	101	7	88	0	.	96	G	107315422	A	G	107315422	3	3	129	1	0	0	0	0	1	0	0	0	14519	410	15	2	651	2	SLC26A4	7	107315422	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	58808840	107315422	51823241	76	16241											
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126542649	126542649	+	Missense_Mutation	SNP	C	C	A	rs78947184	alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRM8	NM_000845	exon5	c.G1103T	p.G368V	TTGCAGCCAAAAT	.	66	28	77	0	C|0.995;T|0.005	581	A	126542649	C	A	126542649	3	1	129	1	0	0	0	0	1	0	0	0	6803	739	26	3	1697	3	GRM8	7	126542649	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	19227227	126542649	32596014	77	16242	89	2									
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126542650	126542650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRM8	NM_000845	exon5	c.G1102T	p.G368C	TGCAGCCAAAATT	.	66	26	76	1	.	581	A	126542650	C	A	126542650	3	1	129	1	0	0	0	0	1	0	0	0	6803	594	21	3	1698	3	GRM8	7	126542650	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	1	126542650	32596013	78	16243	89	2									
LRRC4	64101	ucsc.edu;bcgsc.ca	37	7	127669957	127669957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LRRC4	NM_022143	exon2	c.A737G	p.K246R	CAGAGCTTCTTGA	.	45	4	41	0	.	154	C	127669957	T	C	127669957	3	2	129	1	0	0	0	0	1	0	0	0	8997	1609	56	2	1228	2	LRRC4	7	127669957	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1127307	127669957	31468706	79	16244											
XRCC2	7516	ucsc.edu;bcgsc.ca	37	7	152346389	152346389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XRCC2	NM_005431	exon3	c.C181A	p.L61I	CTGTTAGGTGATA	.	40	4	32	0	.	1084	T	152346389	G	T	152346389	3	4	129	1	0	0	0	0	1	0	0	0	17450	991	35	3	665	3	XRCC2	7	152346389	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	24676432	152346389	6792274	80	16245											
ZNF596	169270	ucsc.edu;bcgsc.ca	37	8	192905	192905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF596	NM_173539	exon3	c.G31T	p.D11Y	TTCGAGGATATCA	.	32	4	32	0	.	90	T	192905	G	T	192905	3	4	129	1	0	0	0	0	1	0	0	0	18023	1174	41	3	37	3	ZNF596	8	192905	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		192905	146171117	81	16246											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2024362	2024362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYOM2	NM_003970	exon11	c.G1262A	p.R421Q	TGGACCGGTGAGC	.	57	17	79	0	.	95	A	2024362	G	A	2024362	3	1	129	1	0	0	0	0	1	0	0	0	10092	1130	39	1	1300	1	MYOM2	8	2024362	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1831457	2024362	144339660	82	16247											
XKR5	389610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6681084	6681084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XKR5	NM_207411	exon4	c.T596A	p.L199Q	TAGAACAGAACCA	.	85	35	82	0	.	90	T	6681084	A	T	6681084	3	4	129	1	0	0	0	0	1	0	0	0	17431	188	7	4	1481	4	XKR5	8	6681084	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	4656722	6681084	139682938	83	16248											
KIAA0146	23514	ucsc.edu;bcgsc.ca	37	8	48625238	48625238	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KIAA0146	NM_001080394	exon15	c.G1992A	p.L664L	TCTGCTGCTTCTG	.	56	5	57	0	.	68	A	48625238	G	A	48625238	2	1	129	1	0	0	0	0	0	0	0	1	8157	1306	46	3		3	KIAA0146	8	48625238	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	41944154	48625238	97738784	84	16249											
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145112593	145112593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OPLAH	NM_017570	exon10	c.G1180A	p.A394T	GATTAGCATCCGT	.	48	22	58	0	.	68	T	145112593	C	T	145112593	3	4	129	1	0	0	0	0	1	0	0	0	10876	710	25	3	2760	3	OPLAH	8	145112593	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	96487355	145112593	1251429	85	16250											
FBXL6	26233	ucsc.edu;bcgsc.ca	37	8	145579629	145579629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXL6	NM_012162	exon8	c.A1471G	p.S491G	CTGACCTGACAGT	.	34	4	53	0	.	658	C	145579629	T	C	145579629	3	2	129	1	0	0	0	0	1	0	0	0	5723	1594	55	2	156	2	FBXL6	8	145579629	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	467036	145579629	784393	86	16251											
JAK2	3717	ucsc.edu;bcgsc.ca	37	9	5064935	5064935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	JAK2	NM_004972	exon9	c.A1109G	p.D370G	TAATTGATGGATA	.	42	4	49	0	.	75307	G	5064935	A	G	5064935	3	3	129	1	0	0	0	0	1	0	0	0	7938	333	12	2	1135	2	JAK2	9	5064935	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10		5064935	136148496	87	16252											
PLIN2	123	ucsc.edu;bcgsc.ca	37	9	19126218	19126218	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLIN2	NM_001122	exon3	c.T120C	p.Y40Y	GTAGGGATACTGG	.	42	4	37	0	.	92	G	19126218	A	G	19126218	2	3	129	1	0	0	0	0	0	0	0	1	12090	340	12	2		2	PLIN2	9	19126218	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	14061283	19126218	122087213	88	16253											
RUSC2	9853	ucsc.edu;bcgsc.ca	37	9	35555121	35555121	+	Silent	SNP	C	C	T	rs149030772	byfrequency	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RUSC2	NM_014806	exon3	c.C2079T	p.P693P	ACTGCCCATCCAG	.	29	4	33	0	C|1.000;T|0.000	91	T	35555121	C	T	35555121	2	4	129	1	0	0	0	0	0	0	0	1	13751	581	21	3		3	RUSC2	9	35555121	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	16428903	35555121	105658310	89	16254											
TJP2	9414	ucsc.edu;bcgsc.ca	37	9	71864355	71864355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TJP2	NM_001170416	exon20	c.T3038C	p.L1013P	ATCAACTTAGGGA	.	43	4	54	0	.	115	C	71864355	T	C	71864355	3	2	129	1	0	0	0	0	1	0	0	0	15927	1609	56	2	3282	2	TJP2	9	71864355	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	36309234	71864355	69349076	90	16255											
SMC5	23137	ucsc.edu;bcgsc.ca	37	9	72912940	72912940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SMC5	NM_015110	exon9	c.G1112T	p.R371M	GACAGAGGAGAAT	.	44	4	37	0	.	229	T	72912940	G	T	72912940	3	4	129	1	0	0	0	0	1	0	0	0	14786	1000	35	3	1146	3	SMC5	9	72912940	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1048585	72912940	68300491	91	16256											
FAM108B1	51104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74481719	74481719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM108B1	NM_016014	exon4	c.A851C	p.E284A	ACCAGTTCCTGTG	.	31	12	40	0	.	90	G	74481719	T	G	74481719	3	3	129	1	0	0	0	0	1	0	0	0	5392	1783	62	5	50	5	FAM108B1	9	74481719	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1568779	74481719	66731712	92	16257											
ZCCHC6	79670	ucsc.edu;bcgsc.ca	37	9	88958022	88958022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZCCHC6	NM_024617	exon6	c.G1054T	p.D352Y	TTACATCCGAATT	.	45	4	47	0	.	92	A	88958022	C	A	88958022	3	1	129	1	0	0	0	0	1	0	0	0	17589	855	30	3	3521	3	ZCCHC6	9	88958022	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	14476303	88958022	52255409	93	16258											
PTPDC1	138639	ucsc.edu;bcgsc.ca	37	9	96860152	96860152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PTPDC1	NM_001253829	exon6	c.T1304C	p.L435P	AGTGCCTTCAACC	.	36	4	30	0	.	227	C	96860152	T	C	96860152	3	2	129	1	0	0	0	0	1	0	0	0	12773	1609	56	2	1406	2	PTPDC1	9	96860152	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	7902130	96860152	44353279	94	16259											
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123199606	123199606	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDK5RAP2	NM_018249	exon25	c.C3922T	p.L1308L	CCAGCAGCTCAGC	.	67	33	89	0	.	229	A	123199606	G	A	123199606	2	1	129	1	0	0	0	0	0	0	0	1	3146	962	34	3		3	CDK5RAP2	9	123199606	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	26339454	123199606	18013825	95	16260											
OR1N1	138883	ucsc.edu;bcgsc.ca	37	9	125288752	125288752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OR1N1	NM_012363	exon1	c.C821A	p.A274E	TACATTGCAGCTG	.	40	4	43	0	.	133	T	125288752	G	T	125288752	3	4	129	1	0	0	0	0	1	0	0	0	10969	1319	46	3	118	3	OR1N1	9	125288752	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2089146	125288752	15924679	96	16261											
FAM129B	64855	ucsc.edu;bcgsc.ca	37	9	130286041	130286041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM129B	NM_022833	exon5	c.A506G	p.H169R	TAGTAGTGACGCG	.	54	6	42	0	.	68	C	130286041	T	C	130286041	3	2	129	1	0	0	0	0	1	0	0	0	5437	1696	59	2	1774	2	FAM129B	9	130286041	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	4997289	130286041	10927390	97	16262											
LAMC3	10319	ucsc.edu;bcgsc.ca	37	9	133954597	133954597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LAMC3	NM_006059	exon23	c.C3839A	p.A1280E	CAGTTGCATCATG	.	43	4	38	0	.	93	A	133954597	C	A	133954597	3	1	129	1	0	0	0	0	1	0	0	0	8616	710	25	3	3929	3	LAMC3	9	133954597	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	3668556	133954597	7258834	98	16263											
ADARB2	105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1284338	1284338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADARB2	NM_018702	exon5	c.T1217G	p.V406G	GCCACGACCTGCG	.	16	5	26	1	.	153	C	1284338	A	C	1284338	3	2	129	1	0	0	0	0	1	0	0	0	283	275	10	5	1026	5	ADARB2	10	1284338	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10		1284338	134250409	99	16264											
ZEB1	6935	ucsc.edu;bcgsc.ca	37	10	31810468	31810468	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZEB1	NM_001174096	exon7	c.T2208C	p.L736L	ACCTCTTGATCTT	.	36	4	45	0	.	518	C	31810468	T	C	31810468	2	2	129	1	0	0	0	0	0	0	0	1	17620	1799	63	2		2	ZEB1	10	31810468	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	30526130	31810468	103724279	100	16265											
C10orf10	11067	ucsc.edu;bcgsc.ca	37	10	45473438	45473438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C10orf10	NM_007021	exon2	c.C41T	p.T14I	CGAATTGTGGGCA	.	30	4	35	0	.	90	A	45473438	G	A	45473438	3	1	129	1	0	0	0	0	1	0	0	0	1580	1377	48	3	601	3	C10orf10	10	45473438	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	13662970	45473438	90061309	101	16266											
CDH23	64072	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73491946	73491946	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDH23	NM_022124	exon31	c.G3918A	p.E1306E	CAACGAGCTGGAC	.	39	15	32	0	.	563	A	73491946	G	A	73491946	2	1	129	1	0	0	0	0	0	0	0	1	3108	962	34	3		3	CDH23	10	73491946	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	28018508	73491946	62042801	102	16267											
TSPAN14	81619	ucsc.edu;bcgsc.ca	37	10	82276005	82276005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN14	NM_030927	exon8	c.C667A	p.Q223K	TGCATCCAGGCGC	.	41	4	38	0	.	91	A	82276005	C	A	82276005	3	1	129	1	0	0	0	0	1	0	0	0	16635	595	21	3	693	3	TSPAN14	10	82276005	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	8784059	82276005	53258742	103	16268											
OPN4	94233	ucsc.edu;bcgsc.ca	37	10	88419195	88419195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OPN4	NM_001030015	exon6	c.T803C	p.F268S	ACATCTTCATCTT	.	45	4	51	0	.	69	C	88419195	T	C	88419195	3	2	129	1	0	0	0	0	1	0	0	0	10882	1783	62	2	825	2	OPN4	10	88419195	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	6143190	88419195	47115552	104	16269											
HIF1AN	55662	ucsc.edu;bcgsc.ca	37	10	102306918	102306918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HIF1AN	NM_017902	exon7	c.A916G	p.I306V	AAGAGAATTGAAT	.	31	4	30	0	.	226	G	102306918	A	G	102306918	3	3	129	1	0	0	0	0	1	0	0	0	7104	101	4	2	942	2	HIF1AN	10	102306918	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	13887723	102306918	33227829	105	16270											
KAZALD1	81621	ucsc.edu;bcgsc.ca	37	10	102824163	102824163	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KAZALD1	NM_030929	exon3	c.C657A	p.P219P	TGACCCCCACATC	.	37	4	33	0	.	90	A	102824163	C	A	102824163	2	1	129	1	0	0	0	0	0	0	0	1	7989	610	22	3		3	KAZALD1	10	102824163	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	517245	102824163	32710584	106	16271											
PDCD11	22984	ucsc.edu;bcgsc.ca	37	10	105178381	105178381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PDCD11	NM_014976	exon15	c.A2096G	p.E699G	AGAGCGAGGGGCG	.	31	5	40	1	.	275	G	105178381	A	G	105178381	3	3	129	1	0	0	0	0	1	0	0	0	11617	304	11	2	2150	2	PDCD11	10	105178381	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	2354218	105178381	30356366	107	16272											
GSTO2	119391	ucsc.edu;bcgsc.ca	37	10	106035008	106035008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GSTO2	NM_001191013	exon3	c.C59A	p.P20Q	CAGTCCCGGAGGG	.	37	4	40	0	.	91	A	106035008	C	A	106035008	3	1	129	1	0	0	0	0	1	0	0	0	6843	652	23	1	65	1	GSTO2	10	106035008	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	856627	106035008	29499739	108	16273											
XPNPEP1	7511	ucsc.edu;bcgsc.ca	37	10	111642310	111642310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XPNPEP1	NM_001167604	exon10	c.G921T	p.Q307H	ATGCACCTGGATC	.	47	4	44	0	.	94	A	111642310	C	A	111642310	3	1	129	1	0	0	0	0	1	0	0	0	17439	680	24	3	1127	3	XPNPEP1	10	111642310	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	5607302	111642310	23892437	109	16274											
GPAM	57678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	113928263	113928263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPAM	NM_020918	exon11	c.G914T	p.R305L	TGCTGTCGAAGTA	.	54	10	55	0	.	92	A	113928263	C	A	113928263	3	1	129	1	0	0	0	0	1	0	0	0	6588	884	31	1	1620	1	GPAM	10	113928263	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	2285953	113928263	21606484	110	16275											
TACC2	10579	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846141	123846141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TACC2	NM_206862	exon4	c.A4126G	p.R1376G	ATGGAGAGGATGG	.	52	7	46	0	.	296	G	123846141	A	G	123846141	3	3	129	1	0	0	0	0	1	0	0	0	15499	295	11	2	4136	2	TACC2	10	123846141	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	9917878	123846141	11688606	111	16276											
STK32C	282974	ucsc.edu;bcgsc.ca	37	10	134036201	134036201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STK32C	NM_173575	exon10	c.A1195G	p.K399E	GCTTCTTCTTCTT	.	43	4	47	0	.	1083	C	134036201	T	C	134036201	3	2	129	1	0	0	0	0	1	0	0	0	15298	1792	62	2	277	2	STK32C	10	134036201	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	10190060	134036201	1498546	112	16277											
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17418528	17418528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ABCC8	NM_000352	exon33	c.C4054T	p.R1352C	CGTAGCGCACGCT	.	81	26	99	0	.	91	A	17418528	G	A	17418528	3	1	129	1	0	0	0	0	1	0	0	0	58	1087	38	1	719	1	ABCC8	11	17418528	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		17418528	117587988	113	16278											
ZDHHC13	54503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19172329	19172329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZDHHC13	NM_019028	exon6	c.A575G	p.K192R	CTCACAAAGTAAT	.	149	51	147	1	.	90	G	19172329	A	G	19172329	3	3	129	1	0	0	0	0	1	0	0	0	17600	14	1	2	597	2	ZDHHC13	11	19172329	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	1753801	19172329	115834187	114	16279											
ACCS	84680	ucsc.edu;bcgsc.ca	37	11	44089461	44089461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACCS	NM_032592	exon2	c.C284A	p.P95H	AGAACCCCAGTGT	.	40	5	37	0	.	155	A	44089461	C	A	44089461	3	1	129	1	0	0	0	0	1	0	0	0	133	623	22	3	286	3	ACCS	11	44089461	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	24917132	44089461	90917055	115	16280											
SLC35C1	55343	ucsc.edu;bcgsc.ca	37	11	45827722	45827722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC35C1	NM_018389	exon1	c.T370C	p.F124L	GTGGTCTTCATCG	.	25	4	22	0	.	90	C	45827722	T	C	45827722	3	2	129	1	0	0	0	0	1	0	0	0	14579	1609	56	2	372	2	SLC35C1	11	45827722	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1738261	45827722	89178794	116	16281											
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46419099	46419099	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AMBRA1	NM_001267782	exon20	c.A3807G	p.P1269P	GAGGGTTGGTCCC	.	39	4	39	0	.	136	C	46419099	T	C	46419099	2	2	129	1	0	0	0	0	0	0	0	1	565	1799	63	2		2	AMBRA1	11	46419099	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	591377	46419099	88587417	117	16282											
LRP4	4038	ucsc.edu;bcgsc.ca	37	11	46897041	46897041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LRP4	NM_002334	exon27	c.G3891A	p.M1297I	CATGTCCATGAGG	.	21	4	26	0	.	94	T	46897041	C	T	46897041	3	4	129	1	0	0	0	0	1	0	0	0	8959	594	21	3	1874	3	LRP4	11	46897041	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	477942	46897041	88109475	118	16283											
RAPSN	5913	ucsc.edu;bcgsc.ca	37	11	47463162	47463162	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RAPSN	NM_005055	exon6	c.912+1G>T	.	ACCTCACCTTGTC	.	57	5	63	0	.	91	A	47463162	C	A	47463162	5	1	129	1	0	0	0	0	0	0	1	0	13051	521	18	3	341	3	RAPSN	11	47463162	Splice_Site	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	566121	47463162	87543354	119	16284											
OR8H1	219469	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56057883	56057883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OR8H1	NM_001005199	exon1	c.C656A	p.S219Y	AGAATGGACACAT	.	98	39	79	1	.	71	T	56057883	G	T	56057883	3	4	129	1	0	0	0	0	1	0	0	0	11237	1174	41	3	281	3	OR8H1	11	56057883	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	8594721	56057883	78948633	120	16285											
GPR137	56834	ucsc.edu;bcgsc.ca	37	11	64055319	64055319	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPR137	NM_001170726	exon5	c.G708T	p.V236V	CCTGGTGAGCGAC	.	58	5	61	0	.	68	T	64055319	G	T	64055319	2	4	129	1	0	0	0	0	0	0	0	1	6645	1277	45	3		3	GPR137	11	64055319	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	7997436	64055319	70951197	121	16286											
ATG2A	23130	ucsc.edu;bcgsc.ca	37	11	64664266	64664266	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ATG2A	NM_015104	exon38	c.C5226A	p.P1742P	CAGGCCGGGCAGC	.	44	4	30	0	.	69	T	64664266	G	T	64664266	2	4	129	1	0	0	0	0	0	0	0	1	1093	1103	39	1		1	ATG2A	11	64664266	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	608947	64664266	70342250	122	16287											
PC	5091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66618382	66618382	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PC	NM_000920	exon17	c.C2236T	p.L746L	TCAGCAGCCCGGC	.	35	17	60	0	.	228	A	66618382	G	A	66618382	2	1	129	1	0	0	0	0	0	0	0	1	11497	962	34	3		3	PC	11	66618382	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1954116	66618382	68388134	123	16288											
CORO1B	57175	ucsc.edu;bcgsc.ca	37	11	67210047	67210047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CORO1B	NM_020441	exon2	c.A53G	p.Q18R	ACCGGCTGCCCGA	.	43	4	49	0	.	108	C	67210047	T	C	67210047	3	2	129	1	0	0	0	0	1	0	0	0	3754	1580	55	2	1456	2	CORO1B	11	67210047	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	591665	67210047	67796469	124	16289											
SUV420H1	51111	ucsc.edu;bcgsc.ca	37	11	67942644	67942644	+	Silent	SNP	C	C	T	rs140940573	byfrequency	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SUV420H1	NM_017635	exon5	c.G384A	p.R128R	AATAGGCCTAAAT	.	38	4	52	0	C|0.999;T|0.001	228	T	67942644	C	T	67942644	2	4	129	1	0	0	0	0	0	0	0	1	15411	738	26	3		3	SUV420H1	11	67942644	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	732597	67942644	67063872	125	16290											
CTTN	2017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70260723	70260723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CTTN	NM_001184740	exon6	c.G367A	p.G123S	TTCGGAGGCAAGT	.	100	34	100	0	.	227	A	70260723	G	A	70260723	3	1	129	1	0	0	0	0	1	0	0	0	4044	1000	35	3	381	3	CTTN	11	70260723	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2318079	70260723	64745793	126	16291											
CCDC83	220047	ucsc.edu;bcgsc.ca	37	11	85597247	85597247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CCDC83	NM_173556	exon5	c.G348A	p.M116I	AGATATGCGCATG	.	37	4	49	0	.	91	A	85597247	G	A	85597247	3	1	129	1	0	0	0	0	1	0	0	0	2857	1319	46	3	362	3	CCDC83	11	85597247	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	15336524	85597247	49409269	127	16292											
ME3	10873	ucsc.edu;bcgsc.ca	37	11	86161034	86161034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ME3	NM_006680	exon10	c.G1028A	p.G343D	GCAATGCCCATAG	.	30	4	28	0	.	515	T	86161034	C	T	86161034	3	4	129	1	0	0	0	0	1	0	0	0	9419	739	26	3	810	3	ME3	11	86161034	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	563787	86161034	48845482	128	16293											
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92087171	92087171	+	Silent	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAT3	NM_001008781	exon1	c.T1893A	p.G631G	TTCTGGTGTTTTA	.	43	4	41	0	.	73	A	92087171	T	A	92087171	2	1	129	1	0	0	0	0	0	0	0	1	5691	1683	59	4		4	FAT3	11	92087171	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	5926137	92087171	42919345	129	16294											
DSCAML1	57453	ucsc.edu;bcgsc.ca	37	11	117389233	117389233	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DSCAML1	NM_020693	exon7	c.A1638G	p.T546T	CCGCGCTGTGCAC	.	35	4	71	0	.	159	C	117389233	T	C	117389233	2	2	129	1	0	0	0	0	0	0	0	1	4769	1567	55	2		2	DSCAML1	11	117389233	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	25302062	117389233	17617283	130	16295											
SCN2B	6327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118037718	118037718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SCN2B	NM_004588	exon4	c.A532G	p.M178V	CCACCATCAGCAC	.	59	20	65	1	.	90	C	118037718	T	C	118037718	3	2	129	1	0	0	0	0	1	0	0	0	13917	1435	50	2	119	2	SCN2B	11	118037718	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	648485	118037718	16968798	131	16296											
TECTA	7007	ucsc.edu;bcgsc.ca	37	11	121008141	121008141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TECTA	NM_005422	exon10	c.C2953A	p.P985T	GAGTGCCCAGAGA	.	38	4	39	0	.	225	A	121008141	C	A	121008141	3	1	129	1	0	0	0	0	1	0	0	0	15744	623	22	3	2991	3	TECTA	11	121008141	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	2970423	121008141	13998375	132	16297											
PATE1	160065	ucsc.edu;bcgsc.ca	37	11	125616219	125616219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PATE1	NM_138294	exon1	c.T20C	p.L7P	TCTTGCTGGAACT	.	54	5	38	0	.	90	C	125616219	T	C	125616219	3	2	129	1	0	0	0	0	1	0	0	0	11473	1580	55	2	22	2	PATE1	11	125616219	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	4608078	125616219	9390297	133	16298											
CCDC77	84318	ucsc.edu;bcgsc.ca	37	12	550073	550073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CCDC77	NM_032358	exon12	c.C1231A	p.R411S	TTGGAGCGTCGAC	.	25	4	30	0	.	91	A	550073	C	A	550073	3	1	129	1	0	0	0	0	1	0	0	0	2851	768	27	1	1269	1	CCDC77	12	550073	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		550073	133301822	134	16299											
CD27	939	ucsc.edu;bcgsc.ca	37	12	6560517	6560517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CD27	NM_001242	exon6	c.C742A	p.Q248K	CCCATCCAGGAGG	.	32	4	59	0	.	659	A	6560517	C	A	6560517	3	1	129	1	0	0	0	0	1	0	0	0	2990	595	21	3	764	3	CD27	12	6560517	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	6010444	6560517	127291378	135	16300											
GPR162	27239	ucsc.edu;bcgsc.ca	37	12	6934781	6934781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPR162	NM_019858	exon3	c.G1000A	p.V334M	GCCGACGTGCGCA	.	46	4	45	0	.	92	A	6934781	G	A	6934781	3	1	129	1	0	0	0	0	1	0	0	0	6666	1145	40	1	1025	1	GPR162	12	6934781	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	374264	6934781	126917114	136	16301											
CD163L1	283316	ucsc.edu;bcgsc.ca	37	12	7519864	7519864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CD163L1	NM_174941	exon18	c.A4247G	p.K1416R	TCTCTCTTGAGGC	.	26	4	35	0	.	100	C	7519864	T	C	7519864	3	2	129	1	0	0	0	0	1	0	0	0	2968	1609	56	2	122	2	CD163L1	12	7519864	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	585083	7519864	126332031	137	16302											
ACVRL1	94	ucsc.edu;bcgsc.ca	37	12	52309921	52309921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACVRL1	NM_000020	exon8	c.C1150A	p.Q384K	GACGAGCAGATCC	.	21	4	27	0	.	521	A	52309921	C	A	52309921	3	1	129	1	0	0	0	0	1	0	0	0	225	711	25	3	1176	3	ACVRL1	12	52309921	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	44790057	52309921	81541974	138	16303											
KRT6A	3853	ucsc.edu;bcgsc.ca	37	12	52881662	52881662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KRT6A	NM_005554	exon9	c.A1537G	p.S513G	AGCTGCTTCCTCC	.	49	4	52	0	.	27	C	52881662	T	C	52881662	3	2	129	1	0	0	0	0	1	0	0	0	8480	1609	56	2	161	2	KRT6A	12	52881662	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	571741	52881662	80970233	139	16304											
SP1	6667	ucsc.edu;bcgsc.ca	37	12	53775988	53775988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SP1	NM_138473	exon3	c.A257G	p.Q86R	CGAGTCAGTCAGG	.	37	4	29	0	.	228	G	53775988	A	G	53775988	3	3	129	1	0	0	0	0	1	0	0	0	14959	188	7	2	267	2	SP1	12	53775988	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	894326	53775988	80075907	140	16305											
MYL6	4637	ucsc.edu;bcgsc.ca	37	12	56553889	56553889	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYL6	NM_079423	exon4	c.C306A	p.G102G	AAATGGCACCGTC	.	35	5	51	0	.	91	A	56553889	C	A	56553889	2	1	129	1	0	0	0	0	0	0	0	1	10051	697	25	3		3	MYL6	12	56553889	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	2777901	56553889	77298006	141	16306											
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56713721	56713721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PAN2	NM_001127460	exon21	c.C2885T	p.P962L	ATCAGTGGAATAA	.	42	4	35	0	.	702	A	56713721	G	A	56713721	3	1	129	1	0	0	0	0	1	0	0	0	11414	1348	47	3	747	3	PAN2	12	56713721	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	159832	56713721	77138174	142	16307											
MYO1A	4640	ucsc.edu;bcgsc.ca	37	12	57441109	57441109	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYO1A	NM_005379	exon5	c.A408G	p.L136L	AGACTGTAGCAGC	.	42	4	40	0	.	231	C	57441109	T	C	57441109	2	2	129	1	0	0	0	0	0	0	0	1	10068	1625	57	2		2	MYO1A	12	57441109	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	727388	57441109	76410786	143	16308											
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63083509	63083509	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PPM1H	NM_020700	exon8	c.C1215T	p.Y405Y	TTTAATGTAGATG	.	40	15	45	0	.	637	A	63083509	G	A	63083509	2	1	129	1	0	0	0	0	0	0	0	1	12341	1372	48	3		3	PPM1H	12	63083509	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	5642400	63083509	70768386	144	16309											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104118857	104118857	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	STAB2,NS,carcinoma,0	STAB2	NM_017564	exon45	c.C4788T	p.R1596R	CTGCCGCGGCAGC	.	32	18	52	0	.	104	T	104118857	C	T	104118857	2	4	129	1	0	0	0	0	0	0	0	1	15237	755	27	1		1	STAB2	12	104118857	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	41035348	104118857	29733038	145	16310											
ACACB	32	ucsc.edu;bcgsc.ca	37	12	109679059	109679059	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACACB	NM_001093	exon35	c.A4995G	p.K1665K	CTACAAAGAAGTG	.	31	4	42	0	.	98	G	109679059	A	G	109679059	2	3	129	1	0	0	0	0	0	0	0	1	107	69	3	2		2	ACACB	12	109679059	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	5560202	109679059	24172836	146	16311											
KDM2B	84678	ucsc.edu;bcgsc.ca	37	12	121878722	121878722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KDM2B	NM_032590	exon21	c.C3507A	p.S1169R	ACTGGAGCTGCAA	.	41	4	52	1	.	638	T	121878722	G	T	121878722	3	4	129	1	0	0	0	0	1	0	0	0	8125	962	34	3	567	3	KDM2B	12	121878722	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	12199663	121878722	11973173	147	16312											
DNAH10	196385	ucsc.edu;bcgsc.ca	37	12	124416000	124416000	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DNAH10	NM_207437	exon73	c.G12543T	p.L4181L	CCTGCTGGAGCTG	.	32	5	38	0	.	95	T	124416000	G	T	124416000	2	4	129	1	0	0	0	0	0	0	0	1	4598	1335	47	3		3	DNAH10	12	124416000	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2537278	124416000	9435895	148	16313											
ANKLE2	23141	ucsc.edu;bcgsc.ca	37	12	133303866	133303866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ANKLE2	NM_015114	exon13	c.C2779T	p.R927C	TCCTGCGGAGCTG	.	19	4	29	0	.	68	A	133303866	G	A	133303866	3	1	129	1	0	0	0	0	1	0	0	0	633	1116	39	1	41	1	ANKLE2	12	133303866	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	8887866	133303866	548029	149	16314											
PABPC3	5042	ucsc.edu;bcgsc.ca	37	13	25671638	25671638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PABPC3	NM_030979	exon1	c.G1302T	p.Q434H	TGCTCAGGGTGCC	.	53	5	65	0	.	72	T	25671638	G	T	25671638	3	4	129	1	0	0	0	0	1	0	0	0	11365	991	35	3	1304	3	PABPC3	13	25671638	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		25671638	89498240	150	16315											
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38248410	38248410	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TRPC4	NM_003306	exon5	c.C1329T	p.S443S	ATATAAGGAGTTC	.	106	40	106	0	.	159	A	38248410	G	A	38248410	2	1	129	1	0	0	0	0	0	0	0	1	16577	987	35	3		3	TRPC4	13	38248410	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	12576772	38248410	76921468	151	16316											
SETDB2	83852	ucsc.edu;bcgsc.ca	37	13	50051084	50051084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SETDB2	NM_031915	exon7	c.A814G	p.R272G	AAGTACAGAAAGA	.	38	5	30	0	.	91	G	50051084	A	G	50051084	3	3	129	1	0	0	0	0	1	0	0	0	14139	180	7	2	836	2	SETDB2	13	50051084	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	11802674	50051084	65118794	152	16317											
DDHD1	80821	ucsc.edu;bcgsc.ca	37	14	53618979	53618979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DDHD1	NM_001160147	exon1	c.C838A	p.Q280K	ACTCACGGTTCCA	.	35	4	30	0	.	92	T	53618979	G	T	53618979	3	4	129	1	0	0	0	0	1	0	0	0	4326	1130	39	1	1941	1	DDHD1	14	53618979	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		53618979	53730561	153	16318											
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62550927	62550927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SYT16	NM_031914	exon5	c.C1448T	p.P483L	GGTCTCCGCTCAG	.	57	27	55	0	.	23	T	62550927	C	T	62550927	3	4	129	1	0	0	0	0	1	0	0	0	15469	652	23	1	1466	1	SYT16	14	62550927	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	8931948	62550927	44798613	154	16319											
ACTN1	87	ucsc.edu;bcgsc.ca	37	14	69347583	69347583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACTN1	NM_001102	exon17	c.C2077A	p.Q693K	TGAGCTGGTGGTC	.	57	5	47	0	.	514	T	69347583	G	T	69347583	3	4	129	1	0	0	0	0	1	0	0	0	204	1357	47	3	691	3	ACTN1	14	69347583	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	6796656	69347583	38001957	155	16320											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	86089513	86089513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FLRT2	NM_013231	exon2	c.T1655C	p.I552T	CGGTGATATTTGT	.	72	25	88	0	.	94	C	86089513	T	C	86089513	3	2	129	1	0	0	0	0	1	0	0	0	5939	1406	49	2	1657	2	FLRT2	14	86089513	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	16741930	86089513	21260027	156	16321											
ASB2	51676	ucsc.edu;bcgsc.ca	37	14	94405781	94405781	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ASB2	NM_001202429	exon8	c.G1290A	p.L430L	TTGCAGCAGCAGC	.	32	4	36	0	.	228	T	94405781	C	T	94405781	2	4	129	1	0	0	0	0	0	0	0	1	1023	697	25	3		3	ASB2	14	94405781	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	8316268	94405781	12943759	157	16322											
ADSSL1	122622	ucsc.edu;bcgsc.ca	37	14	105207562	105207562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADSSL1	NM_199165	exon8	c.C904A	p.L302I	GCCGCCCTCCTCG	.	36	4	33	0	.	515	A	105207562	C	A	105207562	3	1	129	1	0	0	0	0	1	0	0	0	348	681	24	3	1130	3	ADSSL1	14	105207562	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	10801781	105207562	2141978	158	16323											
JAG2	3714	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105611364	105611364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	JAG2	NM_002226	exon24	c.G2987A	p.R996H	AGGGAGCGGATCC	.	49	21	55	1	.	846	T	105611364	C	T	105611364	3	4	129	1	0	0	0	0	1	0	0	0	7935	768	27	1	741	1	JAG2	14	105611364	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	403802	105611364	1738176	159	16324											
HERC2	8924	ucsc.edu;bcgsc.ca	37	15	28386583	28386583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HERC2	NM_004667	exon78	c.G12010A	p.G4004R	CCTTCCCATCAGC	.	43	4	37	0	.	234	T	28386583	C	T	28386583	3	4	129	1	0	0	0	0	1	0	0	0	7058	594	21	3	2558	3	HERC2	15	28386583	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		28386583	74144809	160	16325											
C15orf55	256646	ucsc.edu;bcgsc.ca	37	15	34649666	34649666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C15orf55	NM_175741	exon7	c.A3373G	p.R1125G	GGCAGAAGGAAGA	.	26	4	25	0	.	206	G	34649666	A	G	34649666	3	3	129	1	0	0	0	0	1	0	0	0	1803	63	3	2	3399	2	C15orf55	15	34649666	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	6263083	34649666	67881726	161	16326											
SEMA6D	80031	ucsc.edu;bcgsc.ca	37	15	48063850	48063850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SEMA6D	NM_153618	exon19	c.C3090A	p.S1030R	GAGCAGCTACACC	.	59	5	31	0	.	138	A	48063850	C	A	48063850	3	1	129	1	0	0	0	0	1	0	0	0	14042	796	28	3	3203	3	SEMA6D	15	48063850	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	13414184	48063850	54467542	162	16327											
HDC	3067	ucsc.edu;bcgsc.ca	37	15	50545863	50545863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HDC	NM_002112	exon7	c.G721A	p.V241I	CACAGACCTAGGG	.	27	4	22	0	.	156	T	50545863	C	T	50545863	3	4	129	1	0	0	0	0	1	0	0	0	7015	521	18	3	1291	3	HDC	15	50545863	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	2482013	50545863	51985529	163	16328											
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75498804	75498804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C15orf39	NM_015492	exon2	c.T415C	p.C139R	CCTCTGTGCTATG	.	53	22	55	0	.	90	C	75498804	T	C	75498804	3	2	129	1	0	0	0	0	1	0	0	0	1793	1696	59	2	417	2	C15orf39	15	75498804	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	24952941	75498804	27032588	164	16329											
PSTPIP1	9051	ucsc.edu;bcgsc.ca	37	15	77310573	77310573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PSTPIP1	NM_003978	exon2	c.G121A	p.E41K	ATGGAGGAGCTAC	.	33	4	33	0	.	23	A	77310573	G	A	77310573	3	1	129	1	0	0	0	0	1	0	0	0	12721	1175	41	3	127	3	PSTPIP1	15	77310573	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1811769	77310573	25220819	165	16330											
TSPAN3	10099	ucsc.edu;bcgsc.ca	37	15	77339189	77339189	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN3	NM_005724	exon7	c.A750G	p.G250G	ATAGGTTCCGCCA	.	44	4	38	0	.	90	C	77339189	T	C	77339189	2	2	129	1	0	0	0	0	0	0	0	1	16642	1770	62	2		2	TSPAN3	15	77339189	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	28616	77339189	25192203	166	16331											
RASGRF1	5923	ucsc.edu;bcgsc.ca	37	15	79339094	79339094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RASGRF1	NM_001145648	exon5	c.T872C	p.L291P	CTGTTCAGGAAGA	.	38	4	81	0	.	662	G	79339094	A	G	79339094	3	3	129	1	0	0	0	0	1	0	0	0	13072	188	7	2	3045	2	RASGRF1	15	79339094	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	1999905	79339094	23192298	167	16332											
NTRK3	4916	ucsc.edu;bcgsc.ca	37	15	88727470	88727470	+	Silent	SNP	G	G	T	rs201222990	alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NTRK3	NM_001243101	exon4	c.C309A	p.T103T	AAGTCCGGTGTAG	.	41	4	45	0	G|0.999;A|0.001	3538	T	88727470	G	T	88727470	2	4	129	1	0	0	0	0	0	0	0	1	10708	1103	39	1		1	NTRK3	15	88727470	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	9388376	88727470	13803922	168	16333											
AXIN1	8312	broad.mit.edu;bcgsc.ca	37	16	339439	339439	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AXIN1	NM_181050	exon10	c.2354+1G>A	.	CACTCACCTGTAG	.	15	8	23	0	.	684	T	339439	C	T	339439	5	4	129	1	0	0	0	0	0	0	1	0	1236	521	18	3	133	3	AXIN1	16	339439	Splice_Site	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		339439	90015314	169	16334											
GRIN2A	2903	ucsc.edu;bcgsc.ca	37	16	9943615	9943615	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRIN2A	NM_000833	exon6	c.C1326T	p.I442I	TCACTTGATTTTG	.	38	4	66	0	.	349	A	9943615	G	A	9943615	2	1	129	1	0	0	0	0	0	0	0	1	6779	1280	45	3		3	GRIN2A	16	9943615	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	9604176	9943615	80411138	170	16335											
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23366664	23366664	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SCNN1B	NM_000336	exon4	c.T630C	p.S210S	CACCAGTGCTACC	.	34	29	74	0	.	157	C	23366664	T	C	23366664	2	2	129	1	0	0	0	0	0	0	0	1	13928	1693	59	2		2	SCNN1B	16	23366664	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	13423049	23366664	66988089	171	16336											
TNRC6A	27327	ucsc.edu;bcgsc.ca	37	16	24816374	24816374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TNRC6A	NM_014494	exon14	c.G4024T	p.A1342S	ACAGCAGCACAAC	.	22	4	35	0	.	92	T	24816374	G	T	24816374	3	4	129	1	0	0	0	0	1	0	0	0	16337	971	34	3	4078	3	TNRC6A	16	24816374	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1449710	24816374	65538379	172	16337											
LCMT1	51451	ucsc.edu;bcgsc.ca	37	16	25139863	25139863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LCMT1	NM_016309	exon2	c.A181G	p.R61G	AAAGAGAGGAAAG	.	32	5	42	0	.	22	G	25139863	A	G	25139863	3	3	129	1	0	0	0	0	1	0	0	0	8678	295	11	2	187	2	LCMT1	16	25139863	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	323489	25139863	65214890	173	16338											
INO80E	283899	ucsc.edu;bcgsc.ca	37	16	30012145	30012145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	INO80E	NM_173618	exon4	c.C272A	p.P91Q	ACACACCGGCCCC	.	21	4	27	0	.	91	A	30012145	C	A	30012145	3	1	129	1	0	0	0	0	1	0	0	0	7750	652	23	1	286	1	INO80E	16	30012145	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	4872282	30012145	60342608	174	16339											
TOX3	27324	ucsc.edu;bcgsc.ca	37	16	52497937	52497937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TOX3	NM_001080430	exon3	c.T317C	p.F106S	GGGGGAAACTGGG	.	43	4	73	0	.	68	G	52497937	A	G	52497937	3	3	129	1	0	0	0	0	1	0	0	0	16376	14	1	2	1433	2	TOX3	16	52497937	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	22485792	52497937	37856816	175	16340											
CIRH1A	84916	ucsc.edu;bcgsc.ca	37	16	69167467	69167467	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CIRH1A	NM_032830	exon2	c.A105G	p.R35R	TTCACGAACAGAT	.	37	4	57	0	.	90	G	69167467	A	G	69167467	2	3	129	1	0	0	0	0	0	0	0	1	3434	233	9	2		2	CIRH1A	16	69167467	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	16669530	69167467	21187286	176	16341											
GLG1	2734	ucsc.edu;bcgsc.ca	37	16	74516980	74516980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GLG1	NM_001145667	exon10	c.G1614T	p.M538I	TTCTACCATCTTC	.	22	4	39	0	.	136	A	74516980	C	A	74516980	3	1	129	1	0	0	0	0	1	0	0	0	6436	594	21	3	2073	3	GLG1	16	74516980	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	5349513	74516980	15837773	177	16342											
ADAT1	23536	ucsc.edu;bcgsc.ca	37	16	75646506	75646506	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADAT1	NM_012091	exon7	c.C678T	p.I226I	TGGTGAGATTGGG	.	43	4	64	0	.	92	A	75646506	G	A	75646506	2	1	129	1	0	0	0	0	0	0	0	1	284	932	33	3		3	ADAT1	16	75646506	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1129526	75646506	14708247	178	16343											
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77369704	77369704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADAMTS18	NM_199355	exon12	c.G1808T	p.R603L	CATGTCCGGGAAC	.	20	4	42	0	.	1036	A	77369704	C	A	77369704	3	1	129	1	0	0	0	0	1	0	0	0	263	652	23	1	1905	1	ADAMTS18	16	77369704	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	1723198	77369704	12985049	179	16344											
BCMO1	53630	ucsc.edu;bcgsc.ca	37	16	81295852	81295852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BCMO1	NM_017429	exon4	c.G435T	p.R145S	CATCAGGAAAATC	.	29	5	60	0	.	90	T	81295852	G	T	81295852	3	4	129	1	0	0	0	0	1	0	0	0	1384	1165	41	3	449	3	BCMO1	16	81295852	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	3926148	81295852	9058901	180	16345											
FAM92B	339145	ucsc.edu;bcgsc.ca	37	16	85133800	85133800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM92B	NM_198491	exon7	c.G698A	p.R233Q	AGCAGCCGAGTGT	.	34	4	54	0	.	90	T	85133800	C	T	85133800	3	4	129	1	0	0	0	0	1	0	0	0	5653	652	23	1	224	1	FAM92B	16	85133800	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	3837948	85133800	5220953	181	16346											
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	16	88958805	88958805	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CBFA2T3	NM_005187	exon4	c.C468T	p.S156S	GGCTGTGGACGAG	.	32	4	62	0	.	722	A	88958805	G	A	88958805	2	1	129	1	0	0	0	0	0	0	0	1	2698	1335	47	3		3	CBFA2T3	16	88958805	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	3825005	88958805	1395948	182	16347											
PRPF8	10594	ucsc.edu;bcgsc.ca	37	17	1561917	1561917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRPF8	NM_006445	exon33	c.A5279T	p.E1760V	TAAGGCTCAGTGG	.	39	4	77	0	.	525	A	1561917	T	A	1561917	3	1	129	1	0	0	0	0	1	0	0	0	12575	1551	54	4	1772	4	PRPF8	17	1561917	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10		1561917	79633293	183	16348											
C17orf49	124944	ucsc.edu;bcgsc.ca	37	17	6919194	6919194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C17orf49	NM_174893	exon3	c.T218C	p.V73A	GGACAGTGTGAGG	.	27	4	29	0	.	135	C	6919194	T	C	6919194	3	2	129	1	0	0	0	0	1	0	0	0	1860	1710	59	2	228	2	C17orf49	17	6919194	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	5357277	6919194	74276016	184	16349											
NEURL4	84461	ucsc.edu;bcgsc.ca	37	17	7232370	7232370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NEURL4	NM_001005408	exon1	c.A262G	p.T88A	GGACGGTGAAGAC	.	11	4	19	0	.	46	C	7232370	T	C	7232370	3	2	129	1	0	0	0	0	1	0	0	0	10347	1696	59	2	4542	2	NEURL4	17	7232370	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	313176	7232370	73962840	185	16350											
PIK3R5	23533	ucsc.edu;bcgsc.ca	37	17	8790506	8790506	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PIK3R5	NM_001142633	exon12	c.C1812A	p.T604T	GTCATTGGTGCTC	.	30	5	70	0	.	1146	T	8790506	G	T	8790506	2	4	129	1	0	0	0	0	0	0	0	1	11922	1335	47	3		3	PIK3R5	17	8790506	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1558136	8790506	72404704	186	16351											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10353951	10353951	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYH4	NM_017533	exon30	c.4000delG	p.A1334fs	CATGGGCCAGAGT	.	31	18	49	0	.	102	-	10353951	C	-	10353951	7	5	129	1	0	1	0	1	0	0	0	0	10037	739	26	0	1863	0	MYH4	17	10353951	Frame_Shift_Del	DEL	C	TCGA-FV-A23B-01A-11D-A16V-10	1563445	10353951	70841259	187	16352											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10404676	10404676	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYH1	NM_005963	exon27	c.C3489A	p.A1163A	AATCTGGGCTGAG	.	40	26	100	0	.	171	T	10404676	G	T	10404676	2	4	129	1	0	0	0	0	0	0	0	1	10029	1219	43	3		3	MYH1	17	10404676	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	50725	10404676	70790534	188	16353											
PSMD11	5717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30806343	30806343	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PSMD11	NM_002815	exon10	c.C987T	p.N329N	TGATAACTTACTA	.	106	20	63	0	.	91	T	30806343	C	T	30806343	2	4	129	1	0	0	0	0	0	0	0	1	12694	564	20	3		3	PSMD11	17	30806343	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	20401667	30806343	50388867	189	16354											
PLXDC1	57125	ucsc.edu;bcgsc.ca	37	17	37263727	37263727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLXDC1	NM_020405	exon6	c.A644G	p.D215G	CCCTTGTCTTCCC	.	39	4	29	0	.	93	C	37263727	T	C	37263727	3	2	129	1	0	0	0	0	1	0	0	0	12117	1667	58	2	894	2	PLXDC1	17	37263727	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	6457384	37263727	43931483	190	16355											
IKZF3	22806	ucsc.edu;bcgsc.ca	37	17	37922281	37922281	+	Missense_Mutation	SNP	G	G	T	rs114183106	by1000genomes;alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IKZF3	NM_012481	exon8	c.C1292A	p.P431Q	ATGGGCGGGGGCT	.	63	7	64	0	G|0.995;A|0.005	971	T	37922281	G	T	37922281	3	4	129	1	0	0	0	0	1	0	0	0	7616	1116	39	1	241	1	IKZF3	17	37922281	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	658554	37922281	43272929	191	16356											
KRT36	8689	ucsc.edu;bcgsc.ca	37	17	39646095	39646095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KRT36	NM_003771	exon1	c.C22A	p.P8T	AGGTAGGGGTGCA	.	41	4	35	0	.	90	T	39646095	G	T	39646095	3	4	129	1	0	0	0	0	1	0	0	0	8473	1232	43	3	1409	3	KRT36	17	39646095	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1723814	39646095	41549115	192	16357											
STAT5A	6776	ucsc.edu;bcgsc.ca	37	17	40461433	40461433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STAT5A	NM_003152	exon19	c.C2153A	p.A718D	GCAGCGCCACGTA	.	40	4	60	1	.	846	A	40461433	C	A	40461433	3	1	129	1	0	0	0	0	1	0	0	0	15267	739	26	3	2219	3	STAT5A	17	40461433	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	815338	40461433	40733777	193	16358											
RUNDC1	146923	ucsc.edu;bcgsc.ca	37	17	41143436	41143436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RUNDC1	NM_173079	exon5	c.C1545A	p.S515R	ACAGAGCCTACTG	.	36	4	26	0	.	90	A	41143436	C	A	41143436	3	1	129	1	0	0	0	0	1	0	0	0	13742	738	26	3	1563	3	RUNDC1	17	41143436	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	682003	41143436	40051774	194	16359											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41228578	41228578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BRCA1	NM_007300	exon14	c.G4474C	p.G1492R	AAAGGCCTTCTGG	.	75	29	81	0	.	3415	G	41228578	C	G	41228578	3	3	129	1	0	0	0	0	1	0	0	0	1498	681	24	4	1224	4	BRCA1	17	41228578	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	85142	41228578	39966632	195	16360											
KIF18B	146909	ucsc.edu;bcgsc.ca	37	17	43013645	43013645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KIF18B	NM_001264573	exon2	c.A68G	p.D23G	TGACTGTCCAGCT	.	21	4	23	0	.	70	C	43013645	T	C	43013645	3	2	129	1	0	0	0	0	1	0	0	0	8281	1667	58	2	2558	2	KIF18B	17	43013645	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1785067	43013645	38181565	196	16361											
DGKE	8526	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	54912182	54912182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DGKE	NM_003647	exon2	c.C26T	p.P9L	CGGCGCCGGGCTC	.	33	13	39	0	.	289	T	54912182	C	T	54912182	3	4	129	1	0	0	0	0	1	0	0	0	4468	652	23	1	28	1	DGKE	17	54912182	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	11898537	54912182	26283028	197	16362											
AKAP1	8165	ucsc.edu;bcgsc.ca	37	17	55184293	55184293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKAP1	NM_001242902	exon3	c.T1468C	p.C490R	GTCACCTGCATGT	.	38	4	39	0	.	227	C	55184293	T	C	55184293	3	2	129	1	0	0	0	0	1	0	0	0	445	1580	55	2	1470	2	AKAP1	17	55184293	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	272111	55184293	26010917	198	16363											
MTMR4	9110	ucsc.edu;mdanderson.org	37	17	56573314	56573314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MTMR4	NM_004687	exon16	c.G2189A	p.G730E	GCTGGTCCCTTAG	.	19	9	15	0	.	91	T	56573314	C	T	56573314	3	4	129	1	0	0	0	0	1	0	0	0	9946	855	30	3	1414	3	MTMR4	17	56573314	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	1389021	56573314	24621896	199	16364											
RGS9	8787	ucsc.edu;bcgsc.ca	37	17	63193341	63193341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RGS9	NM_003835	exon13	c.C958T	p.L320F	TACTTCCTCAAGA	.	45	6	31	0	.	94	T	63193341	C	T	63193341	3	4	129	1	0	0	0	0	1	0	0	0	13313	681	24	3	1008	3	RGS9	17	63193341	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	6620027	63193341	18001869	200	16365											
ABCA6	23460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67084357	67084357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ABCA6	NM_080284	exon28	c.A3649T	p.M1217L	GTTCCATGCATCT	.	54	12	58	0	.	159	A	67084357	T	A	67084357	3	1	129	1	0	0	0	0	1	0	0	0	36	1464	51	4	1252	4	ABCA6	17	67084357	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	3891016	67084357	14110853	201	16366											
EVPL	2125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74015070	74015070	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EVPL	NM_001988	exon11	c.C1209A	p.A403A	CAGAGGGGCCACA	.	108	21	69	1	.	93	T	74015070	G	T	74015070	2	4	129	1	0	0	0	0	0	0	0	1	5292	1219	43	3		3	EVPL	17	74015070	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	6930713	74015070	7180140	202	16367											
MXRA7	439921	ucsc.edu;bcgsc.ca	37	17	74684251	74684251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MXRA7	NM_001008529	exon2	c.A350G	p.E117G	TCCTGCTCCTCTT	.	44	5	50	1	.	90	C	74684251	T	C	74684251	3	2	129	1	0	0	0	0	1	0	0	0	10004	1551	54	2	331	2	MXRA7	17	74684251	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	669181	74684251	6510959	203	16368											
DNAH17	8632	ucsc.edu;bcgsc.ca	37	17	76528759	76528759	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DNAH17	NM_173628	exon20	c.C2919A	p.V973V	ATTGATGACCAGG	.	40	4	47	1	.	142	T	76528759	G	T	76528759	2	4	129	1	0	0	0	0	0	0	0	1	4601	1277	45	3		3	DNAH17	17	76528759	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1844508	76528759	4666451	204	16369											
RAB12	201475	broad.mit.edu;bcgsc.ca	37	18	8633188	8633188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RAB12	NM_001025300	exon3	c.G289T	p.D97Y	CTTAGGGACACAG	.	77	6	52	0	.	68	T	8633188	G	T	8633188	3	4	129	1	0	0	0	0	1	0	0	0	12898	1188	41	3	299	3	RAB12	18	8633188	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		8633188	69444060	205	16370											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057886	9057886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MUC16	NM_024690	exon3	c.G29560C	p.V9854L	TGAAAACAGTGGT	.	91	40	92	0	.	566	G	9057886	C	G	9057886	3	3	129	1	0	0	0	0	1	0	0	0	9973	478	17	4	14291	4	MUC16	19	9057886	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		9057886	50071097	206	16371											
ELAVL3	1995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11577475	11577475	+	Silent	SNP	G	G	A	rs201270169		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ELAVL3	NM_032281	exon2	c.C177T	p.F59F	GCTGCCGAAGAGA	.	90	50	123	0	G|0.999;A|0.001	92	A	11577475	G	A	11577475	2	1	129	1	0	0	0	0	0	0	0	1	5051	1049	37	1		1	ELAVL3	19	11577475	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2519589	11577475	47551508	207	16372											
ZNF878	729747	ucsc.edu;bcgsc.ca	37	19	12155990	12155990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001080404	exon4	c.G226A	p.E76K	GACTTTCTTTACT	.	40	4	48	0	.	.	T	12155990	C	T	12155990	3	4	129	1	0	0	0	0	1	0	0	0	18193	922	32	3	1373	3	ZNF878	19	12155990	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	578515	12155990	46972993	208	16373											
CACNA1A	773	ucsc.edu;bcgsc.ca	37	19	13363877	13363877	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CACNA1A	NM_001127221	exon30	c.G4797T	p.R1599R	GAACACCCGCAGG	.	36	4	59	0	.	67	A	13363877	C	A	13363877	2	1	129	1	0	0	0	0	0	0	0	1	2538	610	22	3		3	CACNA1A	19	13363877	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	1207887	13363877	45765106	209	16374											
CACNA1A	773	broad.mit.edu;mdanderson.org	37	19	13410090	13410090	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CACNA1A	NM_001127221	exon19	c.T2360A	p.L787X	GCCAGCAAGTTCT	.	14	7	8	0	.	67	T	13410090	A	T	13410090	4	4	129	1	0	0	0	0	0	1	0	0	2538	131	5	4	5381	4	CACNA1A	19	13410090	Nonsense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	46213	13410090	45718893	210	16375											
ZNF333	84449	ucsc.edu;bcgsc.ca	37	19	14817512	14817512	+	Silent	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF333	NM_032433	exon7	c.T438A	p.A146A	GGCCGCTATGCAG	.	25	4	23	0	.	92	A	14817512	T	A	14817512	2	1	129	1	0	0	0	0	0	0	0	1	17847	1509	53	4		4	ZNF333	19	14817512	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1407422	14817512	44311471	211	16376											
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15758035	15758046	+	In_Frame_Del	DEL	AAAGTGGAGCCG	AAAGTGGAGCCG	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	AAAGTGGAGCCG	AAAGTGGAGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CYP4F3	NM_001199209	exon5	c.426_437del	p.142_146del	TGGTGAAAAGTGG	.	49	12	68	0	.	93	-	15758046	AAAGTGGAGCCG	-	15758035	7	5	129	1	0	1	0	1	0	0	0	0	4190	11	1	0	440	0	CYP4F3	19	15758035	In_Frame_Del	DEL	AAAGTGGAGCCG	TCGA-FV-A23B-01A-11D-A16V-10	940523	15758035	43370948	212	16377											
UNC13A	23025	ucsc.edu;bcgsc.ca	37	19	17753723	17753723	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	UNC13A	NM_001080421	exon19	c.C2403T	p.H801H	ACTGATGTGGAGC	.	33	4	34	0	.	25	A	17753723	G	A	17753723	2	1	129	1	0	0	0	0	0	0	0	1	16981	1368	48	3		3	UNC13A	19	17753723	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1995688	17753723	41375260	213	16378											
CRLF1	9244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18707746	18707746	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CRLF1	NM_004750	exon5	c.A811T	p.K271X	GGTATTTGGCTTG	.	51	16	88	0	.	514	A	18707746	T	A	18707746	4	1	129	1	0	0	0	0	0	1	0	0	3886	1821	63	4	477	4	CRLF1	19	18707746	Nonsense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	954023	18707746	40421237	214	16379											
CILP2	148113	ucsc.edu;bcgsc.ca	37	19	19653699	19653699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CILP2	NM_153221	exon6	c.G895A	p.E299K	CACCCTGAGTCCC	.	43	4	32	0	.	91	A	19653699	G	A	19653699	3	1	129	1	0	0	0	0	1	0	0	0	3430	1291	45	3	917	3	CILP2	19	19653699	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	945953	19653699	39475284	215	16380											
ATP13A1	57130	ucsc.edu;bcgsc.ca	37	19	19756683	19756683	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ATP13A1	NM_020410	exon24	c.A3360G	p.K1120K	CCTTACTTTGTAA	.	44	4	30	0	.	138	C	19756683	T	C	19756683	2	2	129	1	0	0	0	0	0	0	0	1	1123	1623	56	2		2	ATP13A1	19	19756683	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	102984	19756683	39372300	216	16381											
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36043982	36043982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ATP4A	NM_000704	exon18	c.A2708G	p.D903G	TGGTGGTCCTCCC	.	36	4	39	0	.	91	C	36043982	T	C	36043982	3	2	129	1	0	0	0	0	1	0	0	0	1145	1667	58	2	419	2	ATP4A	19	36043982	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	16287299	36043982	23085001	217	16382											
ETV2	2116	ucsc.edu;bcgsc.ca	37	19	36135135	36135135	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ETV2	NM_014209	exon6	c.716-2A>G	.	TCCCGCAGGTCCC	.	36	4	26	0	.	226	G	36135135	A	G	36135135	5	3	129	1	0	0	0	0	0	0	1	0	5278	202	7	2	732	2	ETV2	19	36135135	Splice_Site	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	91153	36135135	22993848	218	16383											
RYR1	6261	ucsc.edu;bcgsc.ca	37	19	38939397	38939397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RYR1	NM_001042723	exon11	c.C1066A	p.L356I	CTGTGGCTCACCT	.	36	5	38	0	.	100	A	38939397	C	A	38939397	3	1	129	1	0	0	0	0	1	0	0	0	13768	797	28	3	1108	3	RYR1	19	38939397	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	2804262	38939397	20189586	219	16384											
PAPL	0	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39591841	39591841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001004318	exon9	c.A967G	p.K323E	TTCTACAAATATG	.	43	19	17	0	.	.	G	39591841	A	G	39591841	3	3	129	1	0	0	0	0	1	0	0	0	11427	131	5	2	997	2	PAPL	19	39591841	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	652444	39591841	19537142	220	16385											
ZNF234	10780	ucsc.edu;bcgsc.ca	37	19	44661469	44661469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_006630	exon6	c.G1300A	p.G434S	GTATGTGGTAAAG	.	46	4	56	0	.	.	A	44661469	G	A	44661469	3	1	129	1	0	0	0	0	1	0	0	0	17784	1348	47	3	1314	3	ZNF234	19	44661469	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	5069628	44661469	14467514	221	16386											
RELB	5971	ucsc.edu;bcgsc.ca	37	19	45525332	45525332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RELB	.	.	.	.	GGGCTGCGGGAGG	.	39	4	39	0	.	847	T	45525332	C	T	45525332	3	4	129	1	0	0	0	0	1	0	0	0	13217	759	27	1	536	1	RELB	19	45525332	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	863863	45525332	13603651	222	16387											
ARHGAP35	2909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47422780	47422780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_004491	exon1	c.G848A	p.R283H	TGAGTCGCATTGT	.	20	8	23	0	.	.	A	47422780	G	A	47422780	3	1	129	1	0	0	0	0	1	0	0	0	6795	1087	38	1	850	1	ARHGAP35	19	47422780	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1897448	47422780	11706203	223	16388											
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58004285	58004285	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF419	NM_001098491	exon5	c.C363T	p.L121L	ACTGCTCAGTTCA	.	122	41	77	0	.	90	T	58004285	C	T	58004285	2	4	129	1	0	0	0	0	0	0	0	1	17893	813	29	3		3	ZNF419	19	58004285	Silent	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	10581505	58004285	1124698	224	16389											
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu	37	19	58132394	58132399	+	In_Frame_Del	DEL	CTTGTT	CTTGTT	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	CTTGTT	CTTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF134	NM_003435	exon3	c.907_912del	p.303_304del	TCTACACTTGTTC	.	52	10	34	0	.	226	-	58132399	CTTGTT	-	58132394	7	5	129	1	0	1	0	1	0	0	0	0	17721	565	20	0	913	0	ZNF134	19	58132394	In_Frame_Del	DEL	CTTGTT	TCGA-FV-A23B-01A-11D-A16V-10	128109	58132394	996589	225	16390											
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58453498	58453498	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF256	NM_005773	exon3	c.T678C	p.R226R	CTGAACACGTACA	.	115	35	68	0	.	92	G	58453498	A	G	58453498	2	3	129	1	0	0	0	0	0	0	0	1	17796	146	6	2		2	ZNF256	19	58453498	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	321104	58453498	675485	226	16391											
GPCPD1	56261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5579378	5579378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPCPD1	NM_019593	exon3	c.G139A	p.G47S	TTTCACCTGTGTC	.	82	30	73	0	.	90	T	5579378	C	T	5579378	3	4	129	1	0	0	0	0	1	0	0	0	6603	681	24	3	1951	3	GPCPD1	20	5579378	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		5579378	57446142	227	16392											
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36874514	36874514	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KIAA1755	NM_001029864	exon2	c.C18T	p.L6L	TGTGTCGAGGGAT	.	26	10	28	0	.	95	A	36874514	G	A	36874514	2	1	129	1	0	0	0	0	0	0	0	1	8257	1045	37	1		1	KIAA1755	20	36874514	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	31295136	36874514	26151006	228	16393											
KCNS1	3787	ucsc.edu;bcgsc.ca	37	20	43723974	43723974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KCNS1	NM_002251	exon5	c.A1118G	p.Y373C	TCACGGTAGCTGT	.	31	4	33	0	.	90	C	43723974	T	C	43723974	3	2	129	1	0	0	0	0	1	0	0	0	8088	1638	57	2	466	2	KCNS1	20	43723974	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	6849460	43723974	19301546	229	16394											
COL20A1	57642	ucsc.edu;bcgsc.ca	37	20	61944481	61944481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL20A1	NM_020882	exon17	c.G2089T	p.G697W	GTCCCAGGGAACC	.	43	4	37	0	.	90	T	61944481	G	T	61944481	3	4	129	1	0	0	0	0	1	0	0	0	3679	1000	35	3	2151	3	COL20A1	20	61944481	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	18220507	61944481	1081039	230	16395											
LIPI	149998	ucsc.edu;bcgsc.ca	37	21	15558358	15558358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LIPI	NM_198996	exon3	c.C528A	p.F176L	ACCTATGAAATGA	.	35	4	74	0	.	70	T	15558358	G	T	15558358	3	4	129	1	0	0	0	0	1	0	0	0	8825	1281	45	3	949	3	LIPI	21	15558358	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		15558358	32571537	231	16396											
TMPRSS15	5651	ucsc.edu;bcgsc.ca	37	21	19670135	19670135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TMPRSS15	NM_002772	exon19	c.C2177T	p.S726L	TTTGATGAGTTTC	.	29	4	47	0	.	160	A	19670135	G	A	19670135	3	1	129	1	0	0	0	0	1	0	0	0	16243	1294	45	3	910	3	TMPRSS15	21	19670135	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	4111777	19670135	28459760	232	16397											
GRIK1	2897	ucsc.edu;bcgsc.ca	37	21	30968883	30968883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRIK1	NM_000830	exon9	c.G1214T	p.G405V	ACTTCGCCAGCAG	.	21	4	45	0	.	137	A	30968883	C	A	30968883	3	1	129	1	0	0	0	0	1	0	0	0	6773	739	26	3	1738	3	GRIK1	21	30968883	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	11298748	30968883	17161012	233	16398											
TRPM2	7226	ucsc.edu;bcgsc.ca	37	21	45859038	45859038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TRPM2	NM_003307	exon30	c.A4256G	p.K1419R	TGCTGAAGTGCGG	.	45	4	64	0	.	92	G	45859038	A	G	45859038	3	3	129	1	0	0	0	0	1	0	0	0	16583	72	3	2	4374	2	TRPM2	21	45859038	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	14890155	45859038	2270857	234	16399											
DIP2A	23181	ucsc.edu;bcgsc.ca	37	21	47966886	47966886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DIP2A	NM_206890	exon21	c.G2453T	p.R818I	TTCGCAGACACAA	.	43	4	55	0	.	24	T	47966886	G	T	47966886	3	4	129	1	0	0	0	0	1	0	0	0	4527	942	33	3	2580	3	DIP2A	21	47966886	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2107848	47966886	163009	235	16400											
CECR5	27440	ucsc.edu;bcgsc.ca	37	22	17626008	17626008	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CECR5	NM_017829	exon5	c.354-1G>T	.	CCCAGTCTGGAGC	.	26	5	22	0	.	514	A	17626008	C	A	17626008	5	1	129	1	0	0	0	0	0	0	1	0	3207	927	32	3	848	3	CECR5	22	17626008	Splice_Site	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10		17626008	33678558	236	16401											
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19168279	19168279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CLTCL1	NM_007098	exon31	c.A4868T	p.E1623V	TGCTCCTCTTGCT	.	55	26	58	0	.	230	A	19168279	T	A	19168279	3	1	129	1	0	0	0	0	1	0	0	0	3567	1551	54	4	62	4	CLTCL1	22	19168279	Missense_Mutation	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	1542271	19168279	32136287	237	16402											
CDC45	8318	ucsc.edu;bcgsc.ca	37	22	19486623	19486623	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDC45	NM_001178011	exon8	c.516-1G>T	.	CTTCCAGGTGGGC	.	37	4	38	0	.	227	T	19486623	G	T	19486623	5	4	129	1	0	0	0	0	0	0	1	0	3081	1014	35	3	787	3	CDC45	22	19486623	Splice_Site	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	318344	19486623	31817943	238	16403											
SFI1	9814	ucsc.edu;bcgsc.ca	37	22	32009157	32009157	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SFI1	NM_001007467	exon25	c.G2520T	p.A840A	GCGGGCGACAGTG	.	24	5	36	0	.	90	T	32009157	G	T	32009157	2	4	129	1	0	0	0	0	0	0	0	1	14156	1045	37	1		1	SFI1	22	32009157	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	12522534	32009157	19295409	239	16404											
MFNG	4242	ucsc.edu;bcgsc.ca	37	22	37875474	37875474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MFNG	NM_002405	exon4	c.G470T	p.R157I	AAGGCTCTCAGAA	.	44	4	60	0	.	658	A	37875474	C	A	37875474	3	1	129	1	0	0	0	0	1	0	0	0	9525	913	32	3	515	3	MFNG	22	37875474	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	5866317	37875474	13429092	240	16405											
EP300	2033	ucsc.edu;bcgsc.ca	37	22	41545854	41545854	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EP300	NM_001429	exon14	c.T2469C	p.P823P	GCTTCCTCAACCA	.	44	4	38	0	.	2011	C	41545854	T	C	41545854	2	2	129	1	0	0	0	0	0	0	0	1	5148	1538	54	2		2	EP300	22	41545854	Silent	SNP	T	TCGA-FV-A23B-01A-11D-A16V-10	3670380	41545854	9758712	241	16406											
ACO2	50	ucsc.edu;bcgsc.ca	37	22	41914547	41914547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACO2	NM_001098	exon8	c.G1003A	p.D335N	CATTATGACCAAC	.	42	4	54	0	.	290	A	41914547	G	A	41914547	3	1	129	1	0	0	0	0	1	0	0	0	147	1290	45	3	1033	3	ACO2	22	41914547	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	368693	41914547	9390019	242	16407											
MEI1	150365	ucsc.edu;bcgsc.ca	37	22	42128267	42128267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MEI1	NM_152513	exon10	c.G1115A	p.R372K	TGGTGAGGAGCCT	.	25	4	40	0	.	70	A	42128267	G	A	42128267	3	1	129	1	0	0	0	0	1	0	0	0	9465	1000	35	3	1153	3	MEI1	22	42128267	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	213720	42128267	9176299	243	16408											
GRPR	2925	ucsc.edu;bcgsc.ca	37	X	16142451	16142451	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRPR	NM_005314	exon1	c.G375T	p.G125G	TGTTGGGGTGTCT	.	47	4	51	1	.	565	T	16142451	G	T	16142451	2	4	129	1	0	0	0	0	0	0	0	1	6808	1219	43	3		3	GRPR	23	16142451	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10		16142451	139128109	244	16409											
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	20206011	20206011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RPS6KA3	NM_004586	exon9	c.C709T	p.P237S	CTTCTGGAGCCAT	.	177	71	202	0	.	1504	A	20206011	G	A	20206011	3	1	129	1	0	0	0	0	1	0	0	0	13652	1174	41	3	1569	3	RPS6KA3	23	20206011	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	4063560	20206011	135064549	245	16410											
CXorf21	80231	ucsc.edu;bcgsc.ca	37	X	30578387	30578387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CXorf21	NM_025159	exon3	c.G86T	p.G29V	TTTTCCCCAGCCA	.	47	4	54	0	.	131	A	30578387	C	A	30578387	3	1	129	1	0	0	0	0	1	0	0	0	4101	623	22	3	823	3	CXorf21	23	30578387	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	10372376	30578387	124692173	246	16411											
DMD	1756	ucsc.edu;bcgsc.ca	37	X	31462650	31462650	+	Missense_Mutation	SNP	G	G	T	rs143925896	byfrequency;alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DMD	NM_004006	exon60	c.C9032A	p.P3011Q	TTATACGGTGAGA	.	33	4	39	0	G|1.000;A|0.000	265	T	31462650	G	T	31462650	3	4	129	1	0	0	0	0	1	0	0	0	4580	1116	39	1	2219	1	DMD	23	31462650	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	884263	31462650	123807910	247	16412											
TSPAN7	7102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38525510	38525510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN7	NM_004615	exon2	c.G217C	p.G73R	GTCTTTGGCCTGT	.	121	43	92	0	.	63	C	38525510	G	C	38525510	3	2	129	1	0	0	0	0	1	0	0	0	16649	1348	47	4	223	4	TSPAN7	23	38525510	Missense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	7062860	38525510	116745050	248	16413											
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	X	39922119	39922119	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BCOR	NM_001123385	exon9	c.C4053A	p.T1351T	GTTGTCGGTGTAT	.	183	8	183	0	.	229	T	39922119	G	T	39922119	2	4	129	1	0	0	0	0	0	0	0	1	1386	1103	39	1		1	BCOR	23	39922119	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1396609	39922119	115348441	249	16414											
EFHC2	80258	ucsc.edu;bcgsc.ca	37	X	44109452	44109452	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EFHC2	NM_025184	exon5	c.T846C	p.S282S	TAGCTTACTCCTC	.	35	4	59	0	.	135	G	44109452	A	G	44109452	2	3	129	1	0	0	0	0	0	0	0	1	4947	388	14	2		2	EFHC2	23	44109452	Silent	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	4187333	44109452	111161108	250	16415											
UBA1	7317	ucsc.edu;bcgsc.ca	37	X	47065756	47065756	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	UBA1	NM_153280	exon16	c.G1851A	p.S617S	AGAGTCGTACAGT	.	43	4	36	0	.	227	A	47065756	G	A	47065756	2	1	129	1	0	0	0	0	0	0	0	1	16824	1132	40	1		1	UBA1	23	47065756	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	2956304	47065756	108204804	251	16416											
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	114141874	114141874	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HTR2C	NM_000868	exon6	c.G1273T	p.E425X	GTGATCGAGAAAG	.	196	74	216	0	.	133	T	114141874	G	T	114141874	4	4	129	1	0	0	0	0	0	1	0	0	7443	1059	37	1	1287	1	HTR2C	23	114141874	Nonsense_Mutation	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	67076118	114141874	41128686	252	16417											
OR13H1	347468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130678192	130678192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OR13H1	NM_001004486	exon1	c.A145G	p.I49V	TTTCTTATTCACT	.	243	89	210	1	.	108	G	130678192	A	G	130678192	3	3	129	1	0	0	0	0	1	0	0	0	10943	449	16	2	147	2	OR13H1	23	130678192	Missense_Mutation	SNP	A	TCGA-FV-A23B-01A-11D-A16V-10	16536318	130678192	24592368	253	16418											
FATE1	89885	ucsc.edu;bcgsc.ca	37	X	150889963	150889963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FATE1	NM_033085	exon3	c.C331A	p.H111N	CGTTTCCATTATG	.	64	6	61	0	.	131	A	150889963	C	A	150889963	3	1	129	1	0	0	0	0	1	0	0	0	5693	594	21	3	341	3	FATE1	23	150889963	Missense_Mutation	SNP	C	TCGA-FV-A23B-01A-11D-A16V-10	20211771	150889963	4380597	254	16419											
ZNF185	7739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152101462	152101462	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF185	NM_001178108	exon14	c.G1068A	p.T356T	AGCCACGGGCTCC	.	89	41	102	1	.	133	A	152101462	G	A	152101462	2	1	129	1	0	0	0	0	0	0	0	1	17749	1103	39	1		1	ZNF185	23	152101462	Silent	SNP	G	TCGA-FV-A23B-01A-11D-A16V-10	1211499	152101462	3169098	255	16420											
STX12	23673	broad.mit.edu;bcgsc.ca	37	1	28144417	28144417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STX12	NM_177424	exon7	c.A632G	p.D211G	TCCATGACCAGGG	.	124	6	157	0	.	153	G	28144417	A	G	28144417	3	3	130	1	0	0	0	0	1	0	0	0	15337	275	10	2	658	2	STX12	1	28144417	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		28144417	221106204	1	16421											
ZMYND12	84217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	42914268	42914268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZMYND12	NM_032257	exon3	c.C294A	p.Y98X	AAAGAGGTATTTC	.	88	38	119	0	.	91	T	42914268	G	T	42914268	4	4	130	1	0	0	0	0	0	1	0	0	17704	1256	44	3	827	3	ZMYND12	1	42914268	Nonsense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	14769851	42914268	206336353	2	16422											
RPL5	6125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	93307405	93307405	+	Missense_Mutation	SNP	C	C	T	rs200315052		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RPL5	NM_000969	exon8	c.C877T	p.R293W	CAGGAGCGGGCTG	.	166	47	94	1	C|0.999;T|0.000	90	T	93307405	C	T	93307405	3	4	130	1	0	0	0	0	1	0	0	0	13597	759	27	1	907	1	RPL5	1	93307405	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	50393137	93307405	155943216	3	16423											
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110029743	110029743	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATXN7L2	NM_153340	exon4	c.413delC	p.A138fs	GTAGGGCCCCAGG	.	115	33	112	0	.	92	-	110029743	C	-	110029743	7	5	130	1	0	1	0	1	0	0	0	0	1217	739	26	0	427	0	ATXN7L2	1	110029743	Frame_Shift_Del	DEL	C	TCGA-FV-A2QQ-01A-11D-A22F-10	16722338	110029743	139220878	4	16424											
DENND2D	79961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111738547	111738547	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DENND2D	NM_024901	exon6	c.A636T	p.S212S	AGTGCCTGAGTCG	.	29	7	27	0	.	227	A	111738547	T	A	111738547	2	1	130	1	0	0	0	0	0	0	0	1	4431	1567	55	4		4	DENND2D	1	111738547	Silent	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	1708804	111738547	137512074	5	16425											
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145474461	145474461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ANKRD34A	NM_001039888	exon4	c.C1133T	p.P378L	CGGCTCCCTCTCC	.	67	11	68	0	.	68	T	145474461	C	T	145474461	3	4	130	1	0	0	0	0	1	0	0	0	662	623	22	3	1135	3	ANKRD34A	1	145474461	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	33735914	145474461	103776160	6	16426											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628362	156628362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BCAN	NM_021948	exon13	c.C2465A	p.P822H	AGCTGCCCCTGGC	.	63	6	58	0	.	516	A	156628362	C	A	156628362	3	1	130	1	0	0	0	0	1	0	0	0	1345	623	22	3	2585	3	BCAN	1	156628362	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	11153901	156628362	92622259	7	16427											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158655029	158655029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPTA1	NM_003126	exon2	c.A133G	p.R45G	GACCCCTCTCAGC	.	154	74	102	0	.	142	C	158655029	T	C	158655029	3	2	130	1	0	0	0	0	1	0	0	0	15115	1550	54	2	7330	2	SPTA1	1	158655029	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	2026667	158655029	90595592	8	16428											
LRRC52	440699	ucsc.edu;mdanderson.org	37	1	165533062	165533062	+	RNA	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRRC52	.	.	.	.	ATTTAGTTGCCAG	.	122	56	92	0	.	91	A	165533062	T	A	165533062	1	1	130	0	1	0	0	0	0	0	0	0	9010	1740	60	4		4	LRRC52	1	165533062	RNA	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	6878033	165533062	83717559	9	16429											
ADCY10	55811	broad.mit.edu;bcgsc.ca	37	1	167849412	167849412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY10	NM_018417	exon11	c.T1157C	p.V386A	CTGGCAACACCGA	.	123	5	78	0	.	493	G	167849412	A	G	167849412	3	3	130	1	0	0	0	0	1	0	0	0	293	43	2	2	3767	2	ADCY10	1	167849412	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	2316350	167849412	81401209	10	16430											
SFT2D2	375035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	168195328	168195328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SFT2D2	NM_199344	exon1	c.T11C	p.L4P	ACAAGCTGAAGAA	.	26	10	36	0	.	69	C	168195328	T	C	168195328	3	2	130	1	0	0	0	0	1	0	0	0	14186	1580	55	2	13	2	SFT2D2	1	168195328	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	345916	168195328	81055293	11	16431											
SELE	6401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169702100	169702100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SELE	NM_000450	exon3	c.C77A	p.T26N	GTGGAGGTGTTGT	.	130	17	82	0	.	95	T	169702100	G	T	169702100	3	4	130	1	0	0	0	0	1	0	0	0	14013	1261	44	3	1799	3	SELE	1	169702100	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	1506772	169702100	79548521	12	16432											
RGS16	6004	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182572454	182572454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RGS16	NM_002928	exon2	c.G65A	p.R22H	CCCAGACGTGTCT	.	143	33	138	1	.	227	T	182572454	C	T	182572454	3	4	130	1	0	0	0	0	1	0	0	0	13298	536	19	1	559	1	RGS16	1	182572454	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	12870354	182572454	66678167	13	16433											
HHAT	55733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210637950	210637950	+	Missense_Mutation	SNP	G	G	A	rs143700139		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HHAT	NM_001170587	exon7	c.G961A	p.A321T	CCACCCGCCCTCC	.	172	68	133	1	G|1.000;A|0.000	92	A	210637950	G	A	210637950	3	1	130	1	0	0	0	0	1	0	0	0	7089	1087	38	1	1082	1	HHAT	1	210637950	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	28065496	210637950	38612671	14	16434											
FAM71A	149647	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	212799352	212799352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM71A	NM_153606	exon1	c.C1133A	p.T378N	TACTGACCAGCAG	.	106	30	73	1	.	94	A	212799352	C	A	212799352	3	1	130	1	0	0	0	0	1	0	0	0	5607	507	18	3	1135	3	FAM71A	1	212799352	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	2161402	212799352	36451269	15	16435											
SH3BP5L	80851	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	249106250	249106250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SH3BP5L	NM_030645	exon7	c.A1031G	p.D344G	TGCAGGTCTGAAG	.	20	4	13	0	.	90	C	249106250	T	C	249106250	3	2	130	1	0	0	0	0	1	0	0	0	14248	1667	58	2	154	2	SH3BP5L	1	249106250	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	36306898	249106250	144371	16	16436											
ALLC	55821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3727570	3727570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ALLC	NM_018436	exon5	c.C284T	p.A95V	AAGCAGCAAACTT	.	107	37	93	1	.	23	T	3727570	C	T	3727570	3	4	130	1	0	0	0	0	1	0	0	0	534	710	25	3	298	3	ALLC	2	3727570	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10		3727570	239471803	17	16437											
BUB1	699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111399745	111399745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BUB1	NM_004336	exon20	c.C2414T	p.T805I	CCCTGGGTAGCTT	.	223	21	203	1	.	1060	A	111399745	G	A	111399745	3	1	130	1	0	0	0	0	1	0	0	0	1570	1261	44	3	867	3	BUB1	2	111399745	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	107672175	111399745	131799628	18	16438											
PSD4	23550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113940279	113940279	+	Silent	SNP	C	C	T	rs147089589		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSD4	NM_012455	exon2	c.C246T	p.D82D	TCAGGACGGGCTG	.	87	29	71	1	C|1.000;T|0.000	229	T	113940279	C	T	113940279	2	4	130	1	0	0	0	0	0	0	0	1	12649	535	19	1		1	PSD4	2	113940279	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	2540534	113940279	129259094	19	16439											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141806729	141806729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRP1B	NM_018557	exon11	c.G1615T	p.D539Y	TCAAGTCCATTCC	.	220	67	182	0	.	311	A	141806729	C	A	141806729	3	1	130	1	0	0	0	0	1	0	0	0	8955	855	30	3	12508	3	LRP1B	2	141806729	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	27866450	141806729	101392644	20	16440											
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153471433	153471433	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FMNL2	NM_052905	exon12	c.T1131C	p.D377D	TTTTGATGTAGGA	.	127	47	149	0	.	516	C	153471433	T	C	153471433	2	2	130	1	0	0	0	0	0	0	0	1	5952	1461	51	2		2	FMNL2	2	153471433	Silent	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	11664704	153471433	89727940	21	16441											
RPRM	56475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154334986	154334986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RPRM	NM_019845	exon1	c.C94A	p.Q32K	ACGCCTGGGTGCA	.	30	9	28	0	.	204	T	154334986	G	T	154334986	3	4	130	1	0	0	0	0	1	0	0	0	13618	1357	47	3	239	3	RPRM	2	154334986	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	863553	154334986	88864387	22	16442											
FIGN	55137	hgsc.bcm.edu;bcgsc.ca	37	2	164467480	164467481	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FIGN	NM_018086	exon3	c.862_863insC	p.T288fs	CAGTGGTGGGGGG	.	66	11	70	0	.	156	G	164467481	-	G	164467480	7	5	130	1	0	1	1	0	0	0	0	0	5891	1696	59	0	1421	0	FIGN	2	164467480	Frame_Shift_Ins	INS	-	TCGA-FV-A2QQ-01A-11D-A22F-10	10132494	164467480	78731893	23	16443											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179436094	179436094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTN	NM_001267550	exon326	c.G74765C	p.R24922T	CTGTCCCTGGAGG	.	170	47	142	0	.	636	G	179436094	C	G	179436094	3	3	130	1	0	0	0	0	1	0	0	0	16732	681	24	4	33362	4	TTN	2	179436094	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	14968614	179436094	63763279	24	16444											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179636192	179636192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTN	NM_001267550	exon34	c.C7862A	p.A2621D	GAGATGGCCCCAC	.	119	17	102	0	.	636	T	179636192	G	T	179636192	3	4	130	1	0	0	0	0	1	0	0	0	16732	1203	42	3	103442	3	TTN	2	179636192	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	200098	179636192	63563181	25	16445											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182358113	182358113	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ITGA4	NM_000885	exon11	c.C1215T	p.G405G	CAATGGCCGTGCA	.	115	28	106	0	.	230	T	182358113	C	T	182358113	2	4	130	1	0	0	0	0	0	0	0	1	7878	726	26	3		3	ITGA4	2	182358113	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	2721921	182358113	60841260	26	16446											
STAT4	6775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191927489	191927489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STAT4	NM_001243835	exon9	c.A940G	p.N314D	CTTACTTCTTGAA	.	149	43	119	0	.	914	C	191927489	T	C	191927489	3	2	130	1	0	0	0	0	1	0	0	0	15266	1797	62	2	1370	2	STAT4	2	191927489	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	9569376	191927489	51271884	27	16447											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230724096	230724096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIP12	NM_004238	exon3	c.C293T	p.T98I	GATTCAGTATGCT	.	201	70	156	0	.	572	A	230724096	G	A	230724096	3	1	130	1	0	0	0	0	1	0	0	0	16553	1029	36	3	5841	3	TRIP12	2	230724096	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	38796607	230724096	12475277	28	16448											
IQCA1	79781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237406078	237406078	+	Missense_Mutation	SNP	C	C	T	rs200469019		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IQCA1	NM_001270585	exon2	c.G85A	p.D29N	CTTTATCGAGTAA	.	157	36	125	0	.	23	T	237406078	C	T	237406078	3	4	130	1	0	0	0	0	1	0	0	0	7802	884	31	1	2476	1	IQCA1	2	237406078	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	6681982	237406078	5793295	29	16449											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	361529	361529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHL1	NM_001253388	exon1	c.G70T	p.A24S	TCAAAAGCAATTG	.	46	15	26	0	.	583	T	361529	G	T	361529	3	4	130	1	0	0	0	0	1	0	0	0	3349	971	34	3	72	3	CHL1	3	361529	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		361529	197660901	30	16450											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37367438	37367438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GOLGA4	NM_001172713	exon15	c.C4127A	p.A1376D	TCAATGCTGTCAC	.	125	44	106	0	.	93	A	37367438	C	A	37367438	3	1	130	1	0	0	0	0	1	0	0	0	6555	797	28	3	4185	3	GOLGA4	3	37367438	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	37005909	37367438	160654992	31	16451											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTNNB1	NM_001098209	exon8	c.T1161G	p.N387K	CAGGAATCTTTCA	.	130	45	112	0	.	24361	G	41274911	T	G	41274911	3	3	130	1	0	0	0	0	1	0	0	0	4016	1432	50	5	1187	5	CTNNB1	3	41274911	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	3907473	41274911	156747519	32	16452											
COL7A1	1294	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48612816	48612816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	COL7A1	NM_000094	exon73	c.G6136A	p.G2046S	CCCTGCCTGGGAG	.	40	18	53	1	.	160	T	48612816	C	T	48612816	3	4	130	1	0	0	0	0	1	0	0	0	3704	681	24	3	2882	3	COL7A1	3	48612816	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	7337905	48612816	149409614	33	16453											
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49200370	49200370	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC71	NM_022903	exon2	c.G1272T	p.L424L	GAACTTCAGCAGC	.	139	23	130	0	.	91	A	49200370	C	A	49200370	2	1	130	1	0	0	0	0	0	0	0	1	2844	813	29	3		3	CCDC71	3	49200370	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	587554	49200370	148822060	34	16454											
CCDC66	285331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56597778	56597778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC66	NM_001141947	exon4	c.A169G	p.T57A	AAATCAACACAAG	.	104	14	119	0	.	135	G	56597778	A	G	56597778	3	3	130	1	0	0	0	0	1	0	0	0	2838	43	2	2	183	2	CCDC66	3	56597778	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	7397408	56597778	141424652	35	16455											
ITGB5	3693	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124540317	124540317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ITGB5	NM_002213	exon6	c.A785C	p.K262T	CCAATCTTCTCCT	.	42	7	43	0	.	227	G	124540317	T	G	124540317	3	3	130	1	0	0	0	0	1	0	0	0	7898	1609	56	5	1654	5	ITGB5	3	124540317	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	67942539	124540317	73482113	36	16456											
MUC4	4585	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513177	195513177	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MUC4	NM_018406	exon2	c.C5274A	p.A1758A	AGGGGTGGCCTGA	.	334	44	307	1	.	90	T	195513177	G	T	195513177	2	4	130	1	0	0	0	0	0	0	0	1	9978	1335	47	3		3	MUC4	3	195513177	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	70972860	195513177	2509253	37	16457											
RGS12	6002	ucsc.edu;bcgsc.ca	37	4	3419229	3419229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RGS12	NM_002926	exon9	c.A2722G	p.R908G	ACCGGGAGGTCCC	.	46	5	32	0	.	226	G	3419229	A	G	3419229	3	3	130	1	0	0	0	0	1	0	0	0	13295	295	11	2	2810	2	RGS12	4	3419229	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		3419229	187735047	38	16458											
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52948586	52948586	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPATA18	NM_145263	exon10	c.T1389C	p.A463A	CACTGCTCCCTTA	.	63	21	76	0	.	72	C	52948586	T	C	52948586	2	2	130	1	0	0	0	0	0	0	0	1	15002	1538	54	2		2	SPATA18	4	52948586	Silent	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	49529357	52948586	138205690	39	16459											
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74270860	74270860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ALB	NM_000477	exon2	c.A107G	p.K36R	GGTTTAAAGATTT	.	223	48	201	0	.	96	G	74270860	A	G	74270860	3	3	130	1	0	0	0	0	1	0	0	0	486	14	1	2	113	2	ALB	4	74270860	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	21322274	74270860	116883416	40	16460											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	79396668	79396668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FRAS1	NM_025074	exon54	c.G7759T	p.V2587F	GCCATCGTCCTGT	.	83	30	100	0	.	68	T	79396668	G	T	79396668	3	4	130	1	0	0	0	0	1	0	0	0	6042	1145	40	1	8048	1	FRAS1	4	79396668	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	5125808	79396668	111757608	41	16461											
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89772242	89772242	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM13A	NM_014883	exon7	c.A936G	p.L312L	ATAACTTAGCCGC	.	62	13	57	0	.	70	C	89772242	T	C	89772242	2	2	130	1	0	0	0	0	0	0	0	1	5452	1741	61	2		2	FAM13A	4	89772242	Silent	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	10375574	89772242	101382034	42	16462											
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96141185	96141185	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UNC5C	NM_003728	exon8	c.G1251T	p.S417S	GAGTGCCGAAGAG	.	196	73	189	0	.	94	A	96141185	C	A	96141185	2	1	130	1	0	0	0	0	0	0	0	1	16990	639	23	1		1	UNC5C	4	96141185	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	6368943	96141185	95013091	43	16463											
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146696966	146696966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF827	NM_178835	exon10	c.G2668A	p.G890R	TCTTCCCATCACT	.	59	21	59	0	.	22	T	146696966	C	T	146696966	3	4	130	1	0	0	0	0	1	0	0	0	18177	594	21	3	581	3	ZNF827	4	146696966	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	50555781	146696966	44457310	44	16464											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151770044	151770044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRBA	NM_006726	exon26	c.C4265T	p.S1422F	CCAAGAGAACTTG	.	192	77	164	0	.	157	A	151770044	G	A	151770044	3	1	130	1	0	0	0	0	1	0	0	0	8931	942	33	3	4458	3	LRBA	4	151770044	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	5073078	151770044	39384232	45	16465											
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	9629277	9629277	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TAS2R1	NM_019599	exon1	c.A868T	p.K290X	GGAACTTTTTTGC	.	107	30	74	0	.	93	A	9629277	T	A	9629277	4	1	130	1	0	0	0	0	0	1	0	0	15562	1850	64	4	35	4	TAS2R1	5	9629277	Nonsense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10		9629277	171285983	46	16466											
CDH18	1016	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19473467	19473467	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH18	NM_004934	exon13	c.T2241G	p.A747A	AGACCCAGCTTCT	.	230	44	225	2	.	159	C	19473467	A	C	19473467	2	2	130	1	0	0	0	0	0	0	0	1	3103	175	7	5		5	CDH18	5	19473467	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	9844190	19473467	161441793	47	16467											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	26881520	26881521	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH9	NM_016279	exon12	c.2095_2096insT	p.Q699fs	TTATCTGAAAAAT	.	165	45	149	0	.	99	A	26881521	-	A	26881520	7	5	130	1	0	1	1	0	0	0	0	0	3117	1299	45	0	278	0	CDH9	5	26881520	Frame_Shift_Ins	INS	-	TCGA-FV-A2QQ-01A-11D-A22F-10	7408053	26881520	154033740	48	16468											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38451432	38451432	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EGFLAM	NM_001205301	exon20	c.A2583G	p.R861R	ATCAAGATCAAAT	.	52	13	48	0	.	187	G	38451432	A	G	38451432	2	3	130	1	0	0	0	0	0	0	0	1	4966	330	12	2		2	EGFLAM	5	38451432	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	11569912	38451432	142463828	49	16469											
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45353238	45353238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HCN1	NM_021072	exon5	c.A1341T	p.E447D	AATATTTTCCTCA	.	124	15	103	0	.	91	A	45353238	T	A	45353238	3	1	130	1	0	0	0	0	1	0	0	0	6996	1838	64	4	1347	4	HCN1	5	45353238	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	6901806	45353238	135562022	50	16470											
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54468477	54468477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDC20B	NM_001170402	exon2	c.A65G	p.E22G	ATACTTTCCTTTG	.	54	10	53	0	.	90	C	54468477	T	C	54468477	3	2	130	1	0	0	0	0	1	0	0	0	3060	1797	62	2	1538	2	CDC20B	5	54468477	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	9115239	54468477	126446783	51	16471											
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56178151	56178151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MAP3K1	NM_005921	exon14	c.C3124G	p.L1042V	GATAAACTTTCCC	.	96	28	100	0	.	956	G	56178151	C	G	56178151	3	3	130	1	0	0	0	0	1	0	0	0	9243	565	20	4	3178	4	MAP3K1	5	56178151	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	1709674	56178151	124737109	52	16472											
RNF180	285671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63509811	63509811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RNF180	NM_001113561	exon4	c.G658T	p.A220S	AGATGCGCTACAA	.	116	29	111	1	.	90	T	63509811	G	T	63509811	3	4	130	1	0	0	0	0	1	0	0	0	13464	1087	38	1	668	1	RNF180	5	63509811	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	7331660	63509811	117405449	53	16473											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114506845	114506845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIM36	NM_001017397	exon2	c.C138A	p.D46E	GGAGAAGTCTGTC	.	129	15	108	0	.	725	T	114506845	G	T	114506845	3	4	130	1	0	0	0	0	1	0	0	0	16507	1020	36	3	2208	3	TRIM36	5	114506845	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	50997034	114506845	66408415	54	16474											
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129241310	129241310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHSY3	NM_175856	exon1	c.A788T	p.D263V	ACGACGATGTCTA	.	62	22	49	0	.	25	T	129241310	A	T	129241310	3	4	130	1	0	0	0	0	1	0	0	0	3413	333	12	4	790	4	CHSY3	5	129241310	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	14734465	129241310	51673950	55	16475											
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151304062	151304062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GLRA1	NM_000171	exon1	c.T49C	p.F17L	TGAAGAATACAAT	.	90	28	81	0	.	91	G	151304062	A	G	151304062	3	3	130	1	0	0	0	0	1	0	0	0	6454	101	4	2	1360	2	GLRA1	5	151304062	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	22062752	151304062	29611198	56	16476											
ERGIC1	57222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172359509	172359509	+	Silent	SNP	G	G	A	rs144844076	byfrequency;alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ERGIC1	NM_001031711	exon8	c.G612A	p.R204R	GCAGCGGTACTCC	.	50	5	47	0	G|0.993;T|0.007	93	A	172359509	G	A	172359509	2	1	130	1	0	0	0	0	0	0	0	1	5223	1248	44	3		3	ERGIC1	5	172359509	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	21055447	172359509	8555751	57	16477											
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179023595	179023595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RUFY1	NM_025158	exon13	c.C1544T	p.A515V	AGGGGGCTGAGGA	.	39	13	36	0	.	157	T	179023595	C	T	179023595	3	4	130	1	0	0	0	0	1	0	0	0	13738	797	28	3	1594	3	RUFY1	5	179023595	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	6664086	179023595	1891665	58	16478											
TBC1D9B	23061	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	179306633	179306633	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TBC1D9B	NM_198868	exon8	c.A1411T	p.K471X	CCCCCTTGGCTCC	.	144	47	145	1	.	154	A	179306633	T	A	179306633	4	1	130	1	0	0	0	0	0	1	0	0	15625	1821	63	4	2401	4	TBC1D9B	5	179306633	Nonsense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	283038	179306633	1608627	59	16479											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7585457	7585457	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DSP	NM_004415	exon24	c.G7962A	p.Q2654Q	GGCTCAGGCCTGC	.	86	17	77	0	.	518	A	7585457	G	A	7585457	2	1	130	1	0	0	0	0	0	0	0	1	4781	991	35	3		3	DSP	6	7585457	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		7585457	163529610	60	16480											
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34827055	34827055	+	Silent	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UHRF1BP1	NM_017754	exon14	c.C2922G	p.S974S	AGAGTCCCTACAG	.	70	27	52	0	.	93	G	34827055	C	G	34827055	2	3	130	1	0	0	0	0	0	0	0	1	16965	610	22	4		4	UHRF1BP1	6	34827055	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	27241598	34827055	136288012	61	16481											
EFHC1	114327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52334232	52334232	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EFHC1	NM_018100	exon7	c.G1239A	p.L413L	AATGCTGGTGAAT	.	61	19	64	0	.	93	A	52334232	G	A	52334232	2	1	130	1	0	0	0	0	0	0	0	1	4946	1335	47	3		3	EFHC1	6	52334232	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	17507177	52334232	118780835	62	16482											
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56342207	56342207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DST	NM_015548	exon72	c.G13742C	p.C4581S	GGGTGGCAGATAG	.	142	38	165	1	.	523	G	56342207	C	G	56342207	3	3	130	1	0	0	0	0	1	0	0	0	4783	710	25	4	1825	4	DST	6	56342207	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	4007975	56342207	114772860	63	16483											
RAB23	51715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	57055398	57055398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RAB23	NM_016277	exon7	c.G575T	p.G192V	AAGACACCTGTAT	.	93	34	95	0	.	660	A	57055398	C	A	57055398	3	1	130	1	0	0	0	0	1	0	0	0	12910	521	18	3	142	3	RAB23	6	57055398	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	713191	57055398	114059669	64	16484											
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76024199	76024199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FILIP1	NM_015687	exon5	c.C1349T	p.T450I	AGCTGGGTGCACT	.	227	70	201	0	.	94	A	76024199	G	A	76024199	3	1	130	1	0	0	0	0	1	0	0	0	5894	1261	44	3	2300	3	FILIP1	6	76024199	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	18968801	76024199	95090868	65	16485											
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109190048	109190048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ARMC2	NM_032131	exon4	c.C313G	p.P105A	GCATCTCCCACCA	.	49	16	56	0	.	68	G	109190048	C	G	109190048	3	3	130	1	0	0	0	0	1	0	0	0	951	855	30	4	323	4	ARMC2	6	109190048	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	33165849	109190048	61925019	66	16486											
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160196295	160196295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ACAT2	NM_005891	exon5	c.C584T	p.A195V	AGAAAGCTGGCCA	.	70	18	67	0	.	91	T	160196295	C	T	160196295	3	4	130	1	0	0	0	0	1	0	0	0	122	797	28	3	602	3	ACAT2	6	160196295	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	51006247	160196295	10918772	67	16487											
IQCE	23288	broad.mit.edu;bcgsc.ca	37	7	2646793	2646793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IQCE	NM_152558	exon21	c.C1901G	p.T634S	CTTCTACCAGGAG	.	65	5	64	0	.	226	G	2646793	C	G	2646793	3	3	130	1	0	0	0	0	1	0	0	0	7806	507	18	4	1983	4	IQCE	7	2646793	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10		2646793	156491870	68	16488											
WBSCR28	135886	broad.mit.edu;bcgsc.ca	37	7	73280013	73280013	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	WBSCR28	NM_182504	exon3	c.T608G	p.L203R	CCTATCTCATCAC	.	93	7	108	0	.	90	G	73280013	T	G	73280013	3	3	130	1	0	0	0	0	1	0	0	0	17264	1551	54	5	618	5	WBSCR28	7	73280013	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	70633220	73280013	85858650	69	16489											
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854507	89854507	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STEAP2	NM_001244946	exon3	c.A111G	p.G37G	GATTGGAAGTGGA	.	191	50	177	0	.	92	G	89854507	A	G	89854507	2	3	130	1	0	0	0	0	0	0	0	1	15277	233	9	2		2	STEAP2	7	89854507	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	16574494	89854507	69284156	70	16490											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103159876	103159876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RELN	NM_173054	exon49	c.A7756T	p.T2586S	TTGGTGTAATCAG	.	121	16	95	0	.	574	A	103159876	T	A	103159876	3	1	130	1	0	0	0	0	1	0	0	0	13220	1638	57	4	2694	4	RELN	7	103159876	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	13305369	103159876	55978787	71	16491											
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128482659	128482659	+	Missense_Mutation	SNP	C	C	T	rs200215340		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FLNC	NM_001127487	exon15	c.C2296T	p.R766W	CCCGAGCGGGTAA	.	47	19	62	0	.	141	T	128482659	C	T	128482659	3	4	130	1	0	0	0	0	1	0	0	0	5935	759	27	1	2354	1	FLNC	7	128482659	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	25322783	128482659	30656004	72	16492											
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143792372	143792372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OR2A12	NM_001004135	exon1	c.A172G	p.M58V	ACACCCATGTATG	.	131	44	131	0	.	92	G	143792372	A	G	143792372	3	3	130	1	0	0	0	0	1	0	0	0	10975	217	8	2	174	2	OR2A12	7	143792372	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	15309713	143792372	15346291	73	16493											
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157369433	157369433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PTPRN2	NM_002847	exon19	c.C2655G	p.F885L	CACCAGGAAGTCC	.	41	9	40	0	.	295	C	157369433	G	C	157369433	3	2	130	1	0	0	0	0	1	0	0	0	12808	1165	41	4	412	4	PTPRN2	7	157369433	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	13577061	157369433	1769230	74	16494											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3063095	3063095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSMD1	NM_033225	exon31	c.C4915A	p.P1639T	AGTTTGGTGATAA	.	26	18	31	0	.	86	T	3063095	G	T	3063095	3	4	130	1	0	0	0	0	1	0	0	0	3944	1261	44	3	5939	3	CSMD1	8	3063095	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		3063095	143300927	75	16495											
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	11705274	11705274	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTSB	NM_147780	exon9	c.590delC	p.P197fs	GTGCATGGGGGCC	.	52	15	61	0	.	90	-	11705274	G	-	11705274	7	5	130	1	0	1	0	1	0	0	0	0	4030	1348	47	0	445	0	CTSB	8	11705274	Frame_Shift_Del	DEL	G	TCGA-FV-A2QQ-01A-11D-A22F-10	8642179	11705274	134658748	76	16496											
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87645119	87645119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CNGB3	NM_019098	exon11	c.A1181C	p.Y394S	CTCAGATACCTGT	.	243	77	172	0	.	93	G	87645119	T	G	87645119	3	3	130	1	0	0	0	0	1	0	0	0	3601	1406	49	5	1280	5	CNGB3	8	87645119	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	75939845	87645119	58718903	77	16497											
RRM2B	50484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103237178	103237178	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RRM2B	NM_001172477	exon4	c.C606A	p.I202I	ATTCTCGATGAGA	.	162	33	71	0	.	229	T	103237178	G	T	103237178	2	4	130	1	0	0	0	0	0	0	0	1	13683	1048	37	1		1	RRM2B	8	103237178	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	15592059	103237178	43126844	78	16498											
FAM84B	157638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	127568717	127568717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM84B	NM_174911	exon2	c.G918C	p.E306D	CACTGCCTCTCCG	.	70	7	49	0	.	22	G	127568717	C	G	127568717	3	3	130	1	0	0	0	0	1	0	0	0	5642	680	24	4	18	4	FAM84B	8	127568717	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	24331539	127568717	18795305	79	16499											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	132051783	132051783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY8	NM_001115	exon1	c.T797G	p.L266R	CCCAGGAGCCCGT	.	95	20	53	0	.	157	C	132051783	A	C	132051783	3	2	130	1	0	0	0	0	1	0	0	0	300	304	11	5	3030	5	ADCY8	8	132051783	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	4483066	132051783	14312239	80	16500											
OC90	729330	broad.mit.edu;bcgsc.ca	37	8	133051316	133051316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OC90	NM_001080399	exon7	c.A512G	p.E171G	AAGCACTCTATGG	.	103	6	63	0	.	206	C	133051316	T	C	133051316	3	2	130	1	0	0	0	0	1	0	0	0	10814	1551	54	2	953	2	OC90	8	133051316	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	999533	133051316	13312706	81	16501											
CA9	768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35674288	35674288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CA9	NM_001216	exon1	c.A332C	p.E111A	AGTTAGAGGATCT	.	67	19	68	0	.	95	C	35674288	A	C	35674288	3	2	130	1	0	0	0	0	1	0	0	0	2524	304	11	5	334	5	CA9	9	35674288	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		35674288	105539143	82	16502											
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130428513	130428513	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STXBP1	NM_001032221	exon9	c.C732A	p.L244L	TGTGCTCCATGAA	.	54	17	53	0	.	91	A	130428513	C	A	130428513	2	1	130	1	0	0	0	0	0	0	0	1	15351	842	30	3		3	STXBP1	9	130428513	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	94754225	130428513	10784918	83	16503											
SPTAN1	6709	broad.mit.edu;bcgsc.ca	37	9	131377967	131377967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPTAN1	NM_001130438	exon41	c.C5205A	p.F1735L	TGCCTTCGACACC	.	68	5	56	0	.	158	A	131377967	C	A	131377967	3	1	130	1	0	0	0	0	1	0	0	0	15116	883	31	1	5363	1	SPTAN1	9	131377967	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	949454	131377967	9835464	84	16504											
ADAMTS13	11093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136302887	136302887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADAMTS13	NM_139027	exon13	c.A1454G	p.H485R	GCAGACACATGTG	.	60	14	71	0	.	229	G	136302887	A	G	136302887	3	3	130	1	0	0	0	0	1	0	0	0	258	159	6	2	1504	2	ADAMTS13	9	136302887	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	4924920	136302887	4910544	85	16505											
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18292223	18292223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC39A12	NM_001145195	exon12	c.G1883A	p.C628Y	ATCCATGTGTTCA	.	163	65	123	0	.	154	A	18292223	G	A	18292223	3	1	130	1	0	0	0	0	1	0	0	0	14615	1377	48	3	1925	3	SLC39A12	10	18292223	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		18292223	117242524	86	16506											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26436361	26436361	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MYO3A	NM_017433	exon23	c.C2508A	p.V836V	ACAGGTCCTCTAT	.	106	14	92	0	.	1007	A	26436361	C	A	26436361	2	1	130	1	0	0	0	0	0	0	0	1	10076	842	30	3		3	MYO3A	10	26436361	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	8144138	26436361	109098386	87	16507											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26465727	26465727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MYO3A	NM_017433	exon31	c.A4391G	p.H1464R	TCTCGCACCATAA	.	85	21	102	0	.	1007	G	26465727	A	G	26465727	3	3	130	1	0	0	0	0	1	0	0	0	10076	159	6	2	4505	2	MYO3A	10	26465727	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	29366	26465727	109069020	88	16508											
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48371172	48371172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF488	NM_153034	exon2	c.G640A	p.V214I	CTTTTGGTTGGTG	.	47	13	57	0	.	91	A	48371172	G	A	48371172	3	1	130	1	0	0	0	0	1	0	0	0	17937	1261	44	3	642	3	ZNF488	10	48371172	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	21905445	48371172	87163575	89	16509											
CHAT	1103	ucsc.edu;bcgsc.ca	37	10	50824554	50824554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHAT	NM_020549	exon2	c.A293G	p.H98R	GTCCACACCTCTG	.	43	4	49	1	.	514	G	50824554	A	G	50824554	3	3	130	1	0	0	0	0	1	0	0	0	3313	159	6	2	343	2	CHAT	10	50824554	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	2453382	50824554	84710193	90	16510											
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70192040	70192040	+	Missense_Mutation	SNP	C	C	G	rs201999986	alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001080449	exon12	c.G1796C	p.R599P	GGTTCACGAAAGT	.	171	23	209	0	.	.	G	70192040	C	G	70192040	3	3	130	1	0	0	0	0	1	0	0	0	4596	536	19	4	1426	4	DNA2	10	70192040	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	19367486	70192040	65342707	91	16511											
SLC16A12	387700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91193059	91193059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC16A12	NM_213606	exon8	c.G1313T	p.S438I	GTGTAGCTGCCGG	.	53	15	64	1	.	69	A	91193059	C	A	91193059	3	1	130	1	0	0	0	0	1	0	0	0	14405	797	28	3	241	3	SLC16A12	10	91193059	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	21001019	91193059	44341688	92	16512											
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118896162	118896163	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.G84R	TGGACCCCTTGGC	.	50	15	41	0	.	.	TT	118896163	CC	TT	118896162	3	4	130	1	0	0	0	0	1	0	0	0	17131	623	22	3	902	3	VAX1	10	118896162	Missense_Mutation	DNP	CC	TCGA-FV-A2QQ-01A-11D-A22F-10	27703103	118896162	16638585	93	16513											
ACADSB	36	ucsc.edu;bcgsc.ca	37	10	124812582	124812582	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ACADSB	NM_001609	exon10	c.A1134G	p.A378A	GATTGCAGGACAA	.	41	4	39	0	.	92	G	124812582	A	G	124812582	2	3	130	1	0	0	0	0	0	0	0	1	115	175	7	2		2	ACADSB	10	124812582	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	5916420	124812582	10722165	94	16514											
CD81	975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2417938	2417938	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CD81	NM_004356	exon7	c.G642T	p.V214V	CGCTGTGATCATG	.	38	4	47	0	.	650	T	2417938	G	T	2417938	2	4	130	1	0	0	0	0	0	0	0	1	3039	1277	45	3		3	CD81	11	2417938	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		2417938	132588578	95	16515											
CTR9	9646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10797162	10797162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTR9	NM_014633	exon24	c.T3077A	p.L1026H	ATAAACTTAAAAT	.	88	16	81	1	.	92	A	10797162	T	A	10797162	3	1	130	1	0	0	0	0	1	0	0	0	4024	1609	56	4	3171	4	CTR9	11	10797162	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	8379224	10797162	124209354	96	16516											
KCNE3	10008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74168404	74168404	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KCNE3	NM_005472	exon3	c.G205C	p.A69P	TTACAGCAAATAG	.	98	18	105	0	.	69	G	74168404	C	G	74168404	3	3	130	1	0	0	0	0	1	0	0	0	8024	710	25	4	110	4	KCNE3	11	74168404	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	63371242	74168404	60838112	97	16517											
PGR	5241	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	100999292	100999292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PGR	NM_000926	exon1	c.C510G	p.C170W	AACCTTGCACCCG	.	13	5	15	0	.	652	C	100999292	G	C	100999292	3	2	130	1	0	0	0	0	1	0	0	0	11805	1311	46	4	2323	4	PGR	11	100999292	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	26830888	100999292	34007224	98	16518											
CARD18	59082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105009742	105009742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CARD18	NM_021571	exon2	c.C71A	p.A24D	AGCAAGGCATTTA	.	126	59	118	1	.	206	T	105009742	G	T	105009742	3	4	130	1	0	0	0	0	1	0	0	0	2649	1203	42	3	205	3	CARD18	11	105009742	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	4010450	105009742	29996774	99	16519											
DDX10	1662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108712068	108712068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	DDX10,NS,carcinoma,0	DDX10	NM_004398	exon15	c.G2112T	p.Q704H	AATGCAGAAATCT	.	230	85	217	0	.	1145	T	108712068	G	T	108712068	3	4	130	1	0	0	0	0	1	0	0	0	4342	933	33	3	2170	3	DDX10	11	108712068	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	3702326	108712068	26294448	100	16520											
C11orf92	399948	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111166919	111166919	+	RNA	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	C11orf92	.	.	.	.	AGCCAGCAACAGC	.	89	12	88	0	.	226	G	111166919	C	G	111166919	1	3	130	0	1	0	0	0	0	0	0	0	1672	709	25	4		4	C11orf92	11	111166919	RNA	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	2454851	111166919	23839597	101	16521											
TMPRSS13	84000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117784524	117784524	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMPRSS13	NM_001206790	exon5	c.A777G	p.S259S	CTTCTCTGAGTAG	.	60	12	42	0	.	91	C	117784524	T	C	117784524	2	2	130	1	0	0	0	0	0	0	0	1	16242	1567	55	2		2	TMPRSS13	11	117784524	Silent	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	6617605	117784524	17221992	102	16522											
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7047886	7047886	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATN1	NM_001007026	exon7	c.C2760T	p.V920V	CAATGTCCCGGCC	.	43	14	45	0	.	139	T	7047886	C	T	7047886	2	4	130	1	0	0	0	0	0	0	0	1	1111	842	30	3		3	ATN1	12	7047886	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10		7047886	126804009	103	16523											
CLEC9A	283420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10205339	10205339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CLEC9A	NM_207345	exon4	c.A53T	p.D18V	CACCAGACACTTA	.	88	23	83	0	.	91	T	10205339	A	T	10205339	3	4	130	1	0	0	0	0	1	0	0	0	3522	275	10	4	55	4	CLEC9A	12	10205339	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	3157453	10205339	123646556	104	16524											
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10587104	10587104	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KLRC2	NM_002260	exon3	c.G312A	p.P104P	TGTATTCGGGGAA	.	590	104	562	0	.	514	T	10587104	C	T	10587104	2	4	130	1	0	0	0	0	0	0	0	1	8416	871	31	1		1	KLRC2	12	10587104	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	381765	10587104	123264791	105	16525											
TMEM106C	79022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48359775	48359775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMEM106C	NM_001143843	exon4	c.A406G	p.I136V	CTCACCATCATGG	.	145	40	127	0	.	90	G	48359775	A	G	48359775	3	3	130	1	0	0	0	0	1	0	0	0	16019	217	8	2	416	2	TMEM106C	12	48359775	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	37772671	48359775	85492120	106	16526											
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49724529	49724529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TROAP	NM_005480	exon13	c.G1901A	p.G634E	CCCCAGGGCCCTG	.	39	15	36	0	.	91	A	49724529	G	A	49724529	3	1	130	1	0	0	0	0	1	0	0	0	16572	1232	43	3	2049	3	TROAP	12	49724529	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	1364754	49724529	84127366	107	16527											
DCD	117159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55040929	55040929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DCD	NM_053283	exon2	c.G73T	p.A25S	CAGAGGCGGCCTC	.	57	18	48	0	.	91	A	55040929	C	A	55040929	3	1	130	1	0	0	0	0	1	0	0	0	4283	768	27	1	275	1	DCD	12	55040929	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	5316400	55040929	78810966	108	16528											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	78400495	78400495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NAV3	NM_014903	exon8	c.G1177A	p.A393T	GTCAATGCCCGGA	.	121	28	107	0	.	279	A	78400495	G	A	78400495	3	1	130	1	0	0	0	0	1	0	0	0	10185	1319	46	3	1207	3	NAV3	12	78400495	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	23359566	78400495	55451400	109	16529											
PSPC1	55269	broad.mit.edu;bcgsc.ca	37	13	20356641	20356641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSPC1	NM_001042414	exon2	c.T257C	p.V86A	TTTCCCACGAAGA	.	48	4	40	1	.	135	G	20356641	A	G	20356641	3	3	130	1	0	0	0	0	1	0	0	0	12716	159	6	2	1350	2	PSPC1	13	20356641	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		20356641	94813237	110	16530											
DAOA	267012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	106142291	106142291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DAOA	NM_172370	exon4	c.C323A	p.A108E	TCATGGCAAGAAA	.	91	26	64	0	.	90	A	106142291	C	A	106142291	3	1	130	1	0	0	0	0	1	0	0	0	4232	710	25	3	446	3	DAOA	13	106142291	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	85785650	106142291	9027587	111	16531											
PARP2	10038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20822996	20822996	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PARP2	NM_005484	exon9	c.A831C	p.A277A	CAAGGCAGGTTAC	.	91	30	100	0	.	661	C	20822996	A	C	20822996	2	2	130	1	0	0	0	0	0	0	0	1	11461	175	7	5		5	PARP2	14	20822996	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		20822996	86526544	112	16532											
IPO4	79711	broad.mit.edu;mdanderson.org	37	14	24657605	24657605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IPO4	NM_024658	exon3	c.A181G	p.T61A	TGCGGGTCAGCAC	.	8	3	8	0	.	226	C	24657605	T	C	24657605	3	2	130	1	0	0	0	0	1	0	0	0	7795	1667	58	2	3176	2	IPO4	14	24657605	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	3834609	24657605	82691935	113	16533											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356953	42356953	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRFN5	NM_152447	exon3	c.T1125G	p.I375M	TATAATTAAGCTC	.	94	34	88	0	.	97	G	42356953	T	G	42356953	3	3	130	1	0	0	0	0	1	0	0	0	8941	1742	61	5	1127	5	LRFN5	14	42356953	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	17699348	42356953	64992587	114	16534											
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74989512	74989512	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LTBP2	NM_000428	exon16	c.C2640A	p.P880P	CTGGCTGGGGTGC	.	42	17	26	0	.	92	T	74989512	G	T	74989512	2	4	130	1	0	0	0	0	0	0	0	1	9074	1335	47	3		3	LTBP2	14	74989512	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	32632559	74989512	32360028	115	16535											
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104506642	104506642	+	Missense_Mutation	SNP	G	G	A	rs182776644	alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TDRD9	NM_153046	exon33	c.G3826A	p.V1276I	TTTGACGTTCAAT	.	90	25	93	0	G|0.999;T|0.000	70	A	104506642	G	A	104506642	3	1	130	1	0	0	0	0	1	0	0	0	15733	1145	40	1	3956	1	TDRD9	14	104506642	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	29517130	104506642	2842898	116	16536											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40585896	40585896	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLCB2	NM_004573	exon20	c.C2091T	p.R697R	CACGCTGCGTTCT	.	98	23	91	0	.	275	A	40585896	G	A	40585896	2	1	130	1	0	0	0	0	0	0	0	1	12028	1306	46	3		3	PLCB2	15	40585896	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		40585896	61945496	117	16537											
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42436338	42436338	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLA2G4F	NM_213600	exon18	c.A1980T	p.T660T	CGGGTGTGTGTCT	.	34	10	26	0	.	94	A	42436338	T	A	42436338	2	1	130	1	0	0	0	0	0	0	0	1	12006	1683	59	4		4	PLA2G4F	15	42436338	Silent	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	1850442	42436338	60095054	118	16538											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75969717	75969717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSPG4	NM_001897	exon10	c.G5143A	p.V1715I	CGGGGACCCAGAG	.	38	18	41	0	.	229	T	75969717	C	T	75969717	3	4	130	1	0	0	0	0	1	0	0	0	3960	507	18	3	1829	3	CSPG4	15	75969717	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	33533379	75969717	26561675	119	16539											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79298691	79298691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RASGRF1	NM_002891	exon15	c.G1951A	p.A651T	CACTGGCGTAGCG	.	74	20	57	0	.	662	T	79298691	C	T	79298691	3	4	130	1	0	0	0	0	1	0	0	0	13072	768	27	1	1926	1	RASGRF1	15	79298691	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	3328974	79298691	23232701	120	16540											
IFT140	9742	hgsc.bcm.edu;broad.mit.edu	37	16	1634278	1634278	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IFT140	NM_014714	exon11	c.1299delC	p.S433fs	CCCCGTGGACAGG	.	33	11	18	0	.	95	-	1634278	G	-	1634278	7	5	130	1	0	1	0	1	0	0	0	0	7556	1335	47	0	3173	0	IFT140	16	1634278	Frame_Shift_Del	DEL	G	TCGA-FV-A2QQ-01A-11D-A22F-10		1634278	88720475	121	16541											
TPPP3	51673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67424387	67424387	+	Missense_Mutation	SNP	C	C	T	rs146906089		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TPPP3	NM_016140	exon4	c.G337A	p.V113I	CAGTGACGCCCAC	.	65	16	55	0	C|1.000;T|0.000	90	T	67424387	C	T	67424387	3	4	130	1	0	0	0	0	1	0	0	0	16412	536	19	1	201	1	TPPP3	16	67424387	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	65790109	67424387	22930366	122	16542											
CDRT1	374286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15510886	15510886	+	Splice_Site	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDRT1	NM_006382	exon7	c.1232+2T>A	.	GTACCTACGTGTC	.	139	57	123	0	.	68	T	15510886	A	T	15510886	5	4	130	1	0	0	0	0	0	0	1	0	3174	405	14	4	1052	4	CDRT1	17	15510886	Splice_Site	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		15510886	65684324	123	16543											
CCDC144NL	339184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	20769875	20769875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC144NL	NM_001004306	exon3	c.557delC	p.P186fs	CCCCGTGGGTGCC	.	83	13	71	0	.	90	-	20769875	G	-	20769875	7	5	130	1	0	1	0	1	0	0	0	0	2779	1348	47	0	116	0	CCDC144NL	17	20769875	Frame_Shift_Del	DEL	G	TCGA-FV-A2QQ-01A-11D-A22F-10	5258989	20769875	60425335	124	16544											
CORO6	84940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27943827	27943828	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CORO6	NM_032854	exon7	c.896_897del	p.299_299del	AGGCGGCTCGTCG	.	66	20	63	0	.	90	-	27943828	CT	-	27943827	7	5	130	1	0	1	0	1	0	0	0	0	3758	796	28	0	537	0	CORO6	17	27943827	Frame_Shift_Del	DEL	CT	TCGA-FV-A2QQ-01A-11D-A22F-10	7173952	27943827	53251383	125	16545											
FKBP10	60681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39975631	39975631	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FKBP10	NM_021939	exon5	c.C897T	p.D299D	GATGGACGGCACC	.	114	16	104	1	.	227	T	39975631	C	T	39975631	2	4	130	1	0	0	0	0	0	0	0	1	5902	535	19	1		1	FKBP10	17	39975631	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	12031804	39975631	41219579	126	16546											
MRC2	9902	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60766320	60766320	+	Silent	SNP	G	G	T	rs144406119	byfrequency;alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MRC2	NM_006039	exon23	c.G3333T	p.T1111T	GGGCACGGGTATG	.	67	25	80	0	G|0.993;A|0.007	117	T	60766320	G	T	60766320	2	4	130	1	0	0	0	0	0	0	0	1	9758	1130	39	1		1	MRC2	17	60766320	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	20790689	60766320	20428890	127	16547											
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76183452	76183452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AFMID	NM_001145526	exon1	c.A1G	p.M1V	GACGCCATGATGG	.	43	12	48	0	.	136	G	76183452	A	G	76183452	3	3	130	1	0	0	0	0	1	0	0	0	362	217	8	2	3	2	AFMID	17	76183452	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	15417132	76183452	5011758	128	16548											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76565546	76565546	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DNAH17	NM_173628	exon8	c.C1108T	p.L370L	CACTCAGGACTTC	.	77	27	84	0	.	142	A	76565546	G	A	76565546	2	1	130	1	0	0	0	0	0	0	0	1	4601	991	35	3		3	DNAH17	17	76565546	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	382094	76565546	4629664	129	16549											
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48450496	48450496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ME2	NM_001168335	exon11	c.A1085T	p.Q362L	GTTATCAGGAACC	.	197	27	164	0	.	90	T	48450496	A	T	48450496	3	4	130	1	0	0	0	0	1	0	0	0	9418	188	7	4	1123	4	ME2	18	48450496	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10		48450496	29626752	130	16550											
CNDP2	55748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72183571	72183572	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.G338F	GTGGTTGGCAAGT	.	65	24	57	0	.	.	TT	72183572	GG	TT	72183571	3	4	130	1	0	0	0	0	1	0	0	0	3594	1348	47	3	1042	3	CNDP2	18	72183571	Missense_Mutation	DNP	GG	TCGA-FV-A2QQ-01A-11D-A22F-10	23733075	72183571	5893677	131	16551											
SHC2	25759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	436421	436421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SHC2	NM_012435	exon6	c.A785G	p.D262G	ACGTAATCCGTCA	.	18	5	33	0	.	392	C	436421	T	C	436421	3	2	130	1	0	0	0	0	1	0	0	0	14271	1435	50	2	991	2	SHC2	19	436421	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10		436421	58692562	132	16552											
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4792915	4792915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FEM1A	NM_018708	exon1	c.A1049C	p.Y350S	ATGACTATTCCAG	.	44	13	26	0	.	90	C	4792915	A	C	4792915	3	2	130	1	0	0	0	0	1	0	0	0	5809	449	16	5	1051	5	FEM1A	19	4792915	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	4356494	4792915	54336068	133	16553											
ZNF627	199692	broad.mit.edu;bcgsc.ca	37	19	11728045	11728045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF627	NM_145295	exon4	c.A727G	p.R243G	CATGAAAGGACTC	.	86	4	101	0	.	91	G	11728045	A	G	11728045	3	3	130	1	0	0	0	0	1	0	0	0	18048	63	3	2	741	2	ZNF627	19	11728045	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	6935130	11728045	47400938	134	16554											
ZNF626	199777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20807980	20807980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF626	NM_001076675	exon4	c.G703T	p.G235C	CTTTGCCACATTC	.	39	8	29	0	.	515	A	20807980	C	A	20807980	3	1	130	1	0	0	0	0	1	0	0	0	18047	594	21	3	887	3	ZNF626	19	20807980	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	9079935	20807980	38321003	135	16555											
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46857048	46857048	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PPP5C	NM_006247	exon2	c.C165T	p.I55I	GGCCATCGAGCTG	.	78	23	77	0	.	227	T	46857048	C	T	46857048	2	4	130	1	0	0	0	0	0	0	0	1	12406	874	31	1		1	PPP5C	19	46857048	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	26049068	46857048	12271935	136	16556											
AP2A1	160	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50309033	50309033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AP2A1	NM_014203	exon21	c.C2650T	p.L884F	CTGAGCCTGTGAG	.	47	21	41	1	.	92	T	50309033	C	T	50309033	3	4	130	1	0	0	0	0	1	0	0	0	739	695	24	3	2732	3	AP2A1	19	50309033	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	3451985	50309033	8819950	137	16557											
NKG7	4818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51875422	51875422	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NKG7	NM_005601	exon2	c.T297C	p.F99F	TGCAGCAAAGGCT	.	44	9	37	0	.	90	G	51875422	A	G	51875422	2	3	130	1	0	0	0	0	0	0	0	1	10443	127	5	2		2	NKG7	19	51875422	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	1566389	51875422	7253561	138	16558											
ZNF350	59348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52468795	52468795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF350	NM_021632	exon5	c.A911C	p.N304T	ATGAGATTTCCTT	.	183	57	153	0	.	227	G	52468795	T	G	52468795	3	3	130	1	0	0	0	0	1	0	0	0	17860	1493	52	5	691	5	ZNF350	19	52468795	Missense_Mutation	SNP	T	TCGA-FV-A2QQ-01A-11D-A22F-10	593373	52468795	6660188	139	16559											
ZNF578	147660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014979	53014979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001099694	exon6	c.C1345A	p.H449N	AGACTTCATACTG	.	114	32	99	1	.	.	A	53014979	C	A	53014979	3	1	130	1	0	0	0	0	1	0	0	0	18007	826	29	3	1355	3	ZNF578	19	53014979	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	546184	53014979	6114004	140	16560											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668481	53668481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF665	NM_024733	exon4	c.G1262T	p.R421L	ATTCTTCGATGAT	.	94	29	74	0	.	70	A	53668481	C	A	53668481	3	1	130	1	0	0	0	0	1	0	0	0	18070	884	31	1	778	1	ZNF665	19	53668481	Missense_Mutation	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	653502	53668481	5460502	141	16561											
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54445427	54445427	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CACNG7	NM_031896	exon5	c.G708A	p.A236A	CGAGGCGTGGCGC	.	47	19	59	0	.	91	A	54445427	G	A	54445427	2	1	130	1	0	0	0	0	0	0	0	1	2562	1132	40	1		1	CACNG7	19	54445427	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	776946	54445427	4683556	142	16562											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55453049	55453049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NLRP7	NM_001127255	exon2	c.C31G	p.Q11E	GGGTCTGCAGAGT	.	93	24	93	0	.	291	C	55453049	G	C	55453049	3	2	130	1	0	0	0	0	1	0	0	0	10482	1328	46	4	3122	4	NLRP7	19	55453049	Missense_Mutation	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	1007622	55453049	3675934	143	16563											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57326459	57326459	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PEG3	NM_001146184	exon9	c.G3351A	p.V1117V	GAGATCCACAAAG	.	64	23	72	0	.	164	T	57326459	C	T	57326459	2	4	130	1	0	0	0	0	0	0	0	1	11720	581	21	3		3	PEG3	19	57326459	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10	1873410	57326459	1802524	144	16564											
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32000381	32000381	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SNTA1	NM_003098	exon4	c.G909A	p.Q303Q	AGGTACCTGCTCA	.	42	14	44	0	.	91	T	32000381	C	T	32000381	2	4	130	1	0	0	0	0	0	0	0	1	14871	695	24	3		3	SNTA1	20	32000381	Silent	SNP	C	TCGA-FV-A2QQ-01A-11D-A22F-10		32000381	31025139	145	16565											
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60348088	60348088	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH4	NM_001794	exon4	c.G426T	p.L142L	GGCTCTGGACCCC	.	49	9	49	0	.	282	T	60348088	G	T	60348088	2	4	130	1	0	0	0	0	0	0	0	1	3112	1335	47	3		3	CDH4	20	60348088	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10	28347707	60348088	2677432	146	16566											
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61867529	61867529	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BIRC7	NM_139317	exon1	c.81delG	p.Q27fs	CACGCAGGAGCGC	.	79	14	97	0	.	659	-	61867529	G	-	61867529	7	5	130	1	0	1	0	1	0	0	0	0	1439	991	35	0	83	0	BIRC7	20	61867529	Frame_Shift_Del	DEL	G	TCGA-FV-A2QQ-01A-11D-A22F-10	1519441	61867529	1157991	147	16567											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29445870	29445871	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNRF3	NM_001206998	exon8	c.1701_1702del	p.567_568del	TGACTCTGTGGTA	.	43	10	42	0	.	69	-	29445871	TG	-	29445870	7	5	130	1	0	1	0	1	0	0	0	0	18210	1567	55	0	1427	0	ZNRF3	22	29445870	Frame_Shift_Del	DEL	TG	TCGA-FV-A2QQ-01A-11D-A22F-10		29445870	21858696	148	16568											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45946402	45946402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FBLN1	NM_006487	exon14	c.A1604G	p.N535S	TCCACAACTGCTC	.	46	9	38	0	.	515	G	45946402	A	G	45946402	3	3	130	1	0	0	0	0	1	0	0	0	5698	43	2	2	1658	2	FBLN1	22	45946402	Missense_Mutation	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	16500532	45946402	5358164	149	16569											
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69942515	69942515	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TEX11	NM_001003811	exon14	c.C1002T	p.P334P	GTCTAAGGGCATG	.	63	43	55	0	.	178	A	69942515	G	A	69942515	2	1	130	1	0	0	0	0	0	0	0	1	15771	987	35	3		3	TEX11	23	69942515	Silent	SNP	G	TCGA-FV-A2QQ-01A-11D-A22F-10		69942515	85328045	150	16570											
MCF2	4168	broad.mit.edu;bcgsc.ca	37	X	138670589	138670589	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MCF2	NM_001171876	exon25	c.T2607C	p.N869N	ATCTACATTAGAA	.	146	8	136	0	.	227	G	138670589	A	G	138670589	2	3	130	1	0	0	0	0	0	0	0	1	9378	214	8	2		2	MCF2	23	138670589	Silent	SNP	A	TCGA-FV-A2QQ-01A-11D-A22F-10	68728074	138670589	16599971	151	16571											
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23232489	23232489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EPHB2	NM_004442	exon10	c.G1778T	p.G593V	CCCCAGGCATGAA	.	89	38	99	0	.	1381	T	23232489	G	T	23232489	3	4	131	1	0	0	0	0	1	0	0	0	5175	1203	42	3	1816	3	EPHB2	1	23232489	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10		23232489	226018132	1	16572											
GMEB1	10691	hgsc.bcm.edu;bcgsc.ca	37	1	29040628	29040628	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GMEB1	NM_006582	exon10	c.T1065C	p.D355D	CCAGGATCACAGG	.	89	4	88	0	.	90	C	29040628	T	C	29040628	2	2	131	1	0	0	0	0	0	0	0	1	6487	1432	50	2		2	GMEB1	1	29040628	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	5808139	29040628	220209993	2	16573											
SFPQ	6421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35656352	35656352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SFPQ	NM_005066	exon3	c.A1262C	p.K421T	GCTGGCTTAGAAG	.	155	57	137	0	.	231	G	35656352	T	G	35656352	3	3	131	1	0	0	0	0	1	0	0	0	14160	1609	56	5	893	5	SFPQ	1	35656352	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	6615724	35656352	213594269	3	16574											
TCTEX1D1	200132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67241997	67241997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TCTEX1D1	NM_152665	exon4	c.C247G	p.H83D	GTCAATCATATTT	.	231	95	174	0	.	90	G	67241997	C	G	67241997	3	3	131	1	0	0	0	0	1	0	0	0	15716	826	29	4	257	4	TCTEX1D1	1	67241997	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	31585645	67241997	182008624	4	16575											
SLC35D1	23169	hgsc.bcm.edu;bcgsc.ca	37	1	67512974	67512974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC35D1	NM_015139	exon7	c.T610C	p.Y204H	TTACGTATGCACC	.	75	4	61	0	.	90	G	67512974	A	G	67512974	3	3	131	1	0	0	0	0	1	0	0	0	14581	449	16	2	481	2	SLC35D1	1	67512974	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	270977	67512974	181737647	5	16576											
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71478142	71478142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTGER3	NM_001126044	exon2	c.A923T	p.N308I	GTCTGATTGAAGA	.	99	35	65	0	.	660	A	71478142	T	A	71478142	3	1	131	1	0	0	0	0	1	0	0	0	12744	1493	52	4	564	4	PTGER3	1	71478142	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	3965168	71478142	177772479	6	16577											
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92789250	92789250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPAP2	NM_024813	exon8	c.C773G	p.S258C	CTAACTCCAAACA	.	149	73	125	0	.	91	G	92789250	C	G	92789250	3	3	131	1	0	0	0	0	1	0	0	0	13542	855	30	4	803	4	RPAP2	1	92789250	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	21311108	92789250	156461371	7	16578											
F3	2152	hgsc.bcm.edu;bcgsc.ca	37	1	95001634	95001634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	F3	NM_001993	exon3	c.A299G	p.K100R	GTCTGCTTCACAT	.	121	5	108	0	.	90	C	95001634	T	C	95001634	3	2	131	1	0	0	0	0	1	0	0	0	5347	1609	56	2	604	2	F3	1	95001634	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	2212384	95001634	154248987	8	16579											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380814	114380814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTPN22	NM_015967	exon13	c.C1208T	p.P403L	ACTATTGGAAATG	.	124	45	126	0	.	227	A	114380814	G	A	114380814	3	1	131	1	0	0	0	0	1	0	0	0	12787	1348	47	3	1274	3	PTPN22	1	114380814	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	19379180	114380814	134869807	9	16580											
MCL1	4170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150551951	150551951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MCL1	NM_182763	exon1	c.C56T	p.A19V	AAGCCGGCCCCCC	.	138	33	82	0	.	227	A	150551951	G	A	150551951	3	1	131	1	0	0	0	0	1	0	0	0	9384	1203	42	3	1019	3	MCL1	1	150551951	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	36171137	150551951	98698670	10	16581											
THEM4	117145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151867506	151867506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	THEM4	NM_053055	exon2	c.A264C	p.Q88H	GAAGTCTTGAATC	.	241	11	97	0	.	522	G	151867506	T	G	151867506	3	3	131	1	0	0	0	0	1	0	0	0	15855	1606	56	5	478	5	THEM4	1	151867506	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	1315555	151867506	97383115	11	16582											
PEAR1	375033	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156878092	156878092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PEAR1	NM_001080471	exon9	c.T1075C	p.C359R	CTCAGCTGCCAGG	.	123	18	61	1	.	71	C	156878092	T	C	156878092	3	2	131	1	0	0	0	0	1	0	0	0	11712	1580	55	2	1105	2	PEAR1	1	156878092	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	5010586	156878092	92372529	12	16583											
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158988074	158988074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFI16	NM_005531	exon5	c.A605T	p.K202I	TCCAAAAACGCCC	.	364	120	128	0	.	91	T	158988074	A	T	158988074	3	4	131	1	0	0	0	0	1	0	0	0	7511	14	1	4	619	4	IFI16	1	158988074	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	2109982	158988074	90262547	13	16584											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	179564922	179564922	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TDRD5	NM_173533	exon4	c.C800G	p.S267X	AGACTTCAAGACT	.	259	42	102	0	.	94	G	179564922	C	G	179564922	4	3	131	1	0	0	0	0	0	1	0	0	15730	838	29	4	810	4	TDRD5	1	179564922	Nonsense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	20576848	179564922	69685699	14	16585											
JMJD4	65094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	227922402	227922402	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	JMJD4	NM_023007	exon2	c.C516T	p.G172G	GGAGTAGCCCGCC	.	562	285	287	0	.	226	A	227922402	G	A	227922402	2	1	131	1	0	0	0	0	0	0	0	1	7951	958	34	3		3	JMJD4	1	227922402	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	48357480	227922402	21328219	15	16586											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236749177	236749177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEATR1	NM_018072	exon16	c.G1992C	p.M664I	CTCAATCATCTTC	.	274	17	149	0	.	93	G	236749177	C	G	236749177	3	3	131	1	0	0	0	0	1	0	0	0	7027	826	29	4	4562	4	HEATR1	1	236749177	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	8826775	236749177	12501444	16	16587											
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20823705	20823705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HS1BP3	NM_022460	exon6	c.G871T	p.G291W	TGGGCCCTCCACT	.	103	33	84	0	.	91	A	20823705	C	A	20823705	3	1	131	1	0	0	0	0	1	0	0	0	7361	681	24	3	315	3	HS1BP3	2	20823705	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		20823705	222375668	17	16588											
ALK	238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	29451807	29451807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALK	NM_004304	exon16	c.G2758T	p.G920C	CGAAACCCCCTCT	.	385	164	331	1	.	3833	A	29451807	C	A	29451807	3	1	131	1	0	0	0	0	1	0	0	0	525	623	22	3	2160	3	ALK	2	29451807	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	8628102	29451807	213747566	18	16589											
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100029414	100029414	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	REV1	NM_016316	exon14	c.1952-1G>A	.	CAACTCCTAGGAA	.	117	46	120	0	.	92	T	100029414	C	T	100029414	5	4	131	1	0	0	0	0	0	0	1	0	13239	695	24	3	1848	3	REV1	2	100029414	Splice_Site	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	70577607	100029414	143169959	19	16590											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141819744	141819744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRP1B	NM_018557	exon8	c.A1112C	p.Q371P	GCTGGCTGCTCTG	.	173	62	163	0	.	311	G	141819744	T	G	141819744	3	3	131	1	0	0	0	0	1	0	0	0	8955	1580	55	5	13023	5	LRP1B	2	141819744	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	41790330	141819744	101379629	20	16591											
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178545631	178545631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PDE11A	NM_016953	exon16	c.G2346T	p.E782D	TCTCCTCCTGCAG	.	24	10	38	0	.	93	A	178545631	C	A	178545631	3	1	131	1	0	0	0	0	1	0	0	0	11631	869	30	3	475	3	PDE11A	2	178545631	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	36725887	178545631	64653742	21	16592											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219892384	219892384	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC108	NM_194302	exon13	c.C2199T	p.F733F	GATGGCGAAGGCT	.	255	84	185	0	.	94	A	219892384	G	A	219892384	2	1	131	1	0	0	0	0	0	0	0	1	2743	1049	37	1		1	CCDC108	2	219892384	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	41346753	219892384	23306989	22	16593											
TMEM43	79188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14180787	14180787	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM43	NM_024334	exon11	c.C990T	p.L330L	GATCCTCTACACC	.	174	72	109	0	.	91	T	14180787	C	T	14180787	2	4	131	1	0	0	0	0	0	0	0	1	16164	900	32	3		3	TMEM43	3	14180787	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		14180787	183841643	23	16594											
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50103698	50103698	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RBM6	NM_005777	exon17	c.2706delC	p.I902fs	ACTGATCGGCCTC	.	53	16	44	0	.	280	-	50103698	C	-	50103698	7	5	131	1	0	1	0	1	0	0	0	0	13144	874	31	0	2768	0	RBM6	3	50103698	Frame_Shift_Del	DEL	C	TCGA-FV-A2QR-01A-11D-A20W-10	35922911	50103698	147918732	24	16595											
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69813025	69813025	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MITF	NM_006722	exon1	c.C33T	p.F11F	GGTTTTCCCACGA	.	94	37	81	0	.	524	T	69813025	C	T	69813025	2	4	131	1	0	0	0	0	0	0	0	1	9596	854	30	3		3	MITF	3	69813025	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	19709327	69813025	128209405	25	16596											
DRD3	1814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113850192	113850192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DRD3	NM_033663	exon6	c.A779C	p.Q260P	GTGTCCTGGCAGA	.	195	67	120	0	.	93	G	113850192	T	G	113850192	3	3	131	1	0	0	0	0	1	0	0	0	4758	1580	55	5	431	5	DRD3	3	113850192	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	44037167	113850192	84172238	26	16597											
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419294	122419294	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PARP14	NM_017554	exon6	c.T1893C	p.T631T	AAACACTGTAATC	.	77	4	85	0	.	525	C	122419294	T	C	122419294	2	2	131	1	0	0	0	0	0	0	0	1	11458	1567	55	2		2	PARP14	3	122419294	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	8569102	122419294	75603136	27	16598											
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	147128512	147128526	+	In_Frame_Del	DEL	GCCGCGCATCACGGC	GCCGCGCATCACGGC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GCCGCGCATCACGGC	GCCGCGCATCACGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZIC1	NM_003412	exon1	c.613_627del	p.205_209del	AACATGGCCGCGC	.	51	15	119	0	.	91	-	147128526	GCCGCGCATCACGGC	-	147128512	7	5	131	1	0	1	0	1	0	0	0	0	17675	1203	42	0	615	0	ZIC1	3	147128512	In_Frame_Del	DEL	GCCGCGCATCACGGC	TCGA-FV-A2QR-01A-11D-A20W-10	24709218	147128512	50893918	28	16599											
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151055763	151055763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	P2RY12	NM_022788	exon3	c.G871T	p.A291S	GGCATGCATTTAA	.	66	46	111	0	.	501	A	151055763	C	A	151055763	3	1	131	1	0	0	0	0	1	0	0	0	11349	710	25	3	161	3	P2RY12	3	151055763	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	3927251	151055763	46966667	29	16600											
MME	4311	broad.mit.edu;bcgsc.ca	37	3	154861272	154861272	+	Missense_Mutation	SNP	G	G	C	rs201238171	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MME	NM_007287	exon13	c.G1229C	p.R410P	GGAGACGTTGTGC	.	150	7	204	1	.	516	C	154861272	G	C	154861272	3	2	131	1	0	0	0	0	1	0	0	0	9645	1145	40	4	1275	4	MME	3	154861272	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	3805509	154861272	43161158	30	16601											
MFSD1	64747	hgsc.bcm.edu;bcgsc.ca	37	3	158527010	158527010	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MFSD1	NM_022736	exon6	c.T630C	p.A210A	ATATGCTGTGAGC	.	74	4	58	0	.	90	C	158527010	T	C	158527010	2	2	131	1	0	0	0	0	0	0	0	1	9527	1567	55	2		2	MFSD1	3	158527010	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	3665738	158527010	39495420	31	16602											
ABCF3	55324	hgsc.bcm.edu;bcgsc.ca	37	3	183907370	183907370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCF3	NM_018358	exon13	c.T1139C	p.V380A	TAGTCGTCTCCCA	.	151	8	124	0	.	94	C	183907370	T	C	183907370	3	2	131	1	0	0	0	0	1	0	0	0	67	1667	58	2	1189	2	ABCF3	3	183907370	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	25380360	183907370	14115060	32	16603											
SST	6750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187388043	187388043	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SST	NM_001048	exon1	c.C37T	p.L13L	TGGACAGCGCAGC	.	108	50	131	0	.	91	A	187388043	G	A	187388043	2	1	131	1	0	0	0	0	0	0	0	1	15195	962	34	3		3	SST	3	187388043	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	3480673	187388043	10634387	33	16604											
RAB28	9364	hgsc.bcm.edu;bcgsc.ca	37	4	13462450	13462450	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RAB28	NM_004249	exon4	c.A264G	p.G88G	GAGGACTCCCTGT	.	104	5	63	0	.	228	C	13462450	T	C	13462450	2	2	131	1	0	0	0	0	0	0	0	1	12916	1538	54	2		2	RAB28	4	13462450	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		13462450	177691826	34	16605											
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47916121	47916121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NFXL1	NM_152995	exon2	c.G100A	p.G34R	CTCCTCCGGCGCC	.	37	15	89	0	.	524	T	47916121	C	T	47916121	3	4	131	1	0	0	0	0	1	0	0	0	10388	661	23	1	2723	1	NFXL1	4	47916121	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	34453671	47916121	143238155	35	16606											
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57340266	57340277	+	In_Frame_Del	DEL	ATCTCGTCCGAA	ATCTCGTCCGAA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	ATCTCGTCCGAA	ATCTCGTCCGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRP72	NM_006947	exon4	c.401_412del	p.134_138del	ATAGAGATCTCGT	.	126	20	126	0	.	116	-	57340277	ATCTCGTCCGAA	-	57340266	7	5	131	1	0	1	0	1	0	0	0	0	15156	333	12	0	415	0	SRP72	4	57340266	In_Frame_Del	DEL	ATCTCGTCCGAA	TCGA-FV-A2QR-01A-11D-A20W-10	9424145	57340266	133814010	36	16607											
PKD2	5311	hgsc.bcm.edu;bcgsc.ca	37	4	88940628	88940628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKD2	NM_000297	exon2	c.T614C	p.L205P	CAAGACTCATGGA	.	61	4	44	0	.	91	C	88940628	T	C	88940628	3	2	131	1	0	0	0	0	1	0	0	0	11966	1551	54	2	620	2	PKD2	4	88940628	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	31600362	88940628	102213648	37	16608											
PPP3CA	5530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	101982264	101982264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon10	c.C1136T	p.S379L	TCTTCTGACCCTA	.	405	86	424	0	.	227	A	101982264	G	A	101982264	3	1	131	1	0	0	0	0	1	0	0	0	12397	1294	45	3	449	3	PPP3CA	4	101982264	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	13041636	101982264	89172012	38	16609											
PPP3CA	5530	hgsc.bcm.edu;bcgsc.ca	37	4	102030182	102030182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon3	c.G313A	p.G105R	ATCCCCCGACTTC	.	86	4	76	0	.	227	T	102030182	C	T	102030182	3	4	131	1	0	0	0	0	1	0	0	0	12397	652	23	1	1300	1	PPP3CA	4	102030182	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	47918	102030182	89124094	39	16610											
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102783739	102783739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BANK1	NM_017935	exon4	c.G681T	p.E227D	TGTAGAGGTTGAA	.	187	73	144	0	.	93	T	102783739	G	T	102783739	3	4	131	1	0	0	0	0	1	0	0	0	1309	991	35	3	695	3	BANK1	4	102783739	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	753557	102783739	88370537	40	16611											
HSPA4L	22824	hgsc.bcm.edu;bcgsc.ca	37	4	128724944	128724944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSPA4L	NM_014278	exon7	c.A824G	p.K275R	TAAAGAAGCTAAT	.	99	4	111	0	.	228	G	128724944	A	G	128724944	3	3	131	1	0	0	0	0	1	0	0	0	7413	72	3	2	850	2	HSPA4L	4	128724944	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	25941205	128724944	62429332	41	16612											
SNX25	83891	hgsc.bcm.edu;bcgsc.ca	37	4	186185597	186185597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNX25	NM_031953	exon4	c.A245G	p.E82G	GACATGAAGAACA	.	60	4	104	0	.	273	G	186185597	A	G	186185597	3	3	131	1	0	0	0	0	1	0	0	0	14896	246	9	2	255	2	SNX25	4	186185597	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	57460653	186185597	4968679	42	16613											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	477525	477525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC9A3	NM_004174	exon11	c.C1682A	p.S561Y	CTGGGGGAGCGGA	.	189	44	106	0	.	90	T	477525	G	T	477525	3	4	131	1	0	0	0	0	1	0	0	0	14713	1174	41	3	850	3	SLC9A3	5	477525	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10		477525	180437735	43	16614											
CLPTM1L	81037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1331943	1331943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLPTM1L	NM_030782	exon8	c.A947G	p.K316R	ATGCTCTTCTTCT	.	184	47	115	2	.	153	C	1331943	T	C	1331943	3	2	131	1	0	0	0	0	1	0	0	0	3555	1609	56	2	709	2	CLPTM1L	5	1331943	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	854418	1331943	179583317	44	16615											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16783454	16783454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO10	NM_012334	exon5	c.C592A	p.L198I	TTTCAAGAATAGC	.	105	20	54	0	.	3	T	16783454	G	T	16783454	3	4	131	1	0	0	0	0	1	0	0	0	10062	942	33	3	5732	3	MYO10	5	16783454	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	15451511	16783454	164131806	45	16616											
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52356813	52356813	+	Silent	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGA2	NM_002203	exon12	c.A1395T	p.I465I	CCAGATAGTGCTA	.	194	73	189	0	.	226	T	52356813	A	T	52356813	2	4	131	1	0	0	0	0	0	0	0	1	7875	410	15	4		4	ITGA2	5	52356813	Silent	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	35573359	52356813	128558447	46	16617											
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55206415	55206415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL31RA	NM_001242637	exon12	c.G1557T	p.K519N	ACGAAAGACCTCT	.	267	105	233	0	.	91	T	55206415	G	T	55206415	3	4	131	1	0	0	0	0	1	0	0	0	7691	933	33	3	1603	3	IL31RA	5	55206415	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	2849602	55206415	125708845	47	16618											
KIF2A	3796	hgsc.bcm.edu;bcgsc.ca	37	5	61659121	61659121	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIF2A	NM_001098511	exon13	c.A1236G	p.K412K	ACTGAAACTCATT	.	92	6	45	0	.	228	G	61659121	A	G	61659121	2	3	131	1	0	0	0	0	0	0	0	1	8297	40	2	2		2	KIF2A	5	61659121	Silent	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	6452706	61659121	119256139	48	16619											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82835029	82835029	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VCAN	NM_004385	exon8	c.G6207A	p.T2069T	AGGTACGAAAGCT	.	91	36	66	0	.	238	A	82835029	G	A	82835029	2	1	131	1	0	0	0	0	0	0	0	1	17135	1045	37	1		1	VCAN	5	82835029	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	21175908	82835029	98080231	49	16620											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89954088	89954088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPR98	NM_032119	exon21	c.T4745C	p.I1582T	CTTGTATACCAGA	.	189	73	165	0	.	103	C	89954088	T	C	89954088	3	2	131	1	0	0	0	0	1	0	0	0	6721	1406	49	2	4827	2	GPR98	5	89954088	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	7119059	89954088	90961172	50	16621											
AP3S1	1176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115249174	115249174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3S1	NM_001284	exon6	c.C569A	p.P190H	ACCTGCCCTCTTT	.	230	40	225	0	.	90	A	115249174	C	A	115249174	3	1	131	1	0	0	0	0	1	0	0	0	749	623	22	3	591	3	AP3S1	5	115249174	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	25295086	115249174	65666086	51	16622											
IRF1	3659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131825125	131825125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IRF1	NM_002198	exon2	c.A46C	p.I16L	AATTAATCTGCAT	.	128	41	114	0	.	226	G	131825125	T	G	131825125	3	3	131	1	0	0	0	0	1	0	0	0	7827	1435	50	5	967	5	IRF1	5	131825125	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	16575951	131825125	49090135	52	16623											
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132334321	132334321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZCCHC10	NM_017665	exon4	c.A467G	p.D156G	CTGCTATCTGTGC	.	100	36	82	0	.	90	C	132334321	T	C	132334321	3	2	131	1	0	0	0	0	1	0	0	0	17576	1435	50	2	49	2	ZCCHC10	5	132334321	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	509196	132334321	48580939	53	16624											
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147807217	147807217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FBXO38	NM_030793	exon15	c.G2360A	p.R787K	AAAGGAGAACTAG	.	100	33	82	0	.	231	A	147807217	G	A	147807217	3	1	131	1	0	0	0	0	1	0	0	0	5746	942	33	3	2414	3	FBXO38	5	147807217	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	15472896	147807217	33108043	54	16625											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150908876	150908876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAT2	NM_001447	exon14	c.A9889G	p.S3297G	AGGAGCTCTTCCG	.	122	44	106	0	.	96	C	150908876	T	C	150908876	3	2	131	1	0	0	0	0	1	0	0	0	5690	1551	54	2	3200	2	FAT2	5	150908876	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	3101659	150908876	30006384	55	16626											
UBLCP1	134510	hgsc.bcm.edu;bcgsc.ca	37	5	158705274	158705274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	UBLCP1	NM_145049	exon9	c.A713G	p.K238R	GGGGAAAGTTTTC	.	74	4	46	0	.	91	G	158705274	A	G	158705274	3	3	131	1	0	0	0	0	1	0	0	0	16888	72	3	2	743	2	UBLCP1	5	158705274	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	7796398	158705274	22209986	56	16627											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180036905	180036905	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FLT4	NM_182925	exon28	c.G3807T	p.V1269V	AAGTACCACAGAG	.	124	49	109	0	.	1490	A	180036905	C	A	180036905	2	1	131	1	0	0	0	0	0	0	0	1	5944	608	21	3		3	FLT4	5	180036905	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	21331631	180036905	878355	57	16628											
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30458995	30458995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HLA-E	NM_005516	exon4	c.C692G	p.P231R	TCTACCCTGCGGA	.	166	58	130	0	.	516	G	30458995	C	G	30458995	3	3	131	1	0	0	0	0	1	0	0	0	7210	681	24	4	706	4	HLA-E	6	30458995	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		30458995	140656072	58	16629											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30679231	30679231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MDC1	NM_014641	exon7	c.C2179T	p.P727S	CTTGGGGTGGAGT	.	228	83	184	0	.	273	A	30679231	G	A	30679231	3	1	131	1	0	0	0	0	1	0	0	0	9403	1261	44	3	4126	3	MDC1	6	30679231	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	220236	30679231	140435836	59	16630											
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33405455	33405455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNGAP1	NM_006772	exon8	c.G773A	p.R258H	ACAGCCGCCGGGT	.	64	24	59	0	.	48	A	33405455	G	A	33405455	3	1	131	1	0	0	0	0	1	0	0	0	15444	1087	38	1	803	1	SYNGAP1	6	33405455	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	2726224	33405455	137709612	60	16631											
IP6K3	117283	hgsc.bcm.edu;bcgsc.ca	37	6	33696059	33696059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IP6K3	NM_001142883	exon4	c.T218C	p.L73P	TTCCAGAGGTGCA	.	113	6	89	0	.	240	G	33696059	A	G	33696059	3	3	131	1	0	0	0	0	1	0	0	0	7790	304	11	2	1030	2	IP6K3	6	33696059	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	290604	33696059	137419008	61	16632											
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126080600	126080600	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEY2	NM_012259	exon5	c.C666T	p.H222H	TGCCCACGGCTCT	.	48	32	80	0	.	658	T	126080600	C	T	126080600	2	4	131	1	0	0	0	0	0	0	0	1	7079	535	19	1		1	HEY2	6	126080600	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	92384541	126080600	45034467	62	16633											
PPIL4	85313	hgsc.bcm.edu;bcgsc.ca	37	6	149867088	149867088	+	Silent	SNP	G	G	A	rs200555722	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPIL4	NM_139126	exon1	c.C54T	p.T18T	TTCTTCGGTGTAC	.	49	4	86	0	G|0.997;C|0.003	90	A	149867088	G	A	149867088	2	1	131	1	0	0	0	0	0	0	0	1	12329	1103	39	1		1	PPIL4	6	149867088	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	23786488	149867088	21247979	63	16634											
TMEM181	57583	hgsc.bcm.edu;bcgsc.ca	37	6	159005001	159005001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM181	NM_020823	exon4	c.A595G	p.I199V	ATTCAAATACTTT	.	48	4	65	0	.	70	G	159005001	A	G	159005001	3	3	131	1	0	0	0	0	1	0	0	0	16097	101	4	2	609	2	TMEM181	6	159005001	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	9137913	159005001	12110066	64	16635											
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6026652	6026652	+	Missense_Mutation	SNP	C	C	G	rs63750739	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PMS2	NM_000535	exon11	c.G1744C	p.E582Q	TTTCTTCTTTTTT	.	86	41	77	0	.	1083	G	6026652	C	G	6026652	3	3	131	1	0	0	0	0	1	0	0	0	12143	922	32	4	864	4	PMS2	7	6026652	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		6026652	153112011	65	16636											
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	20438493	20438493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB8	NM_002214	exon9	c.C1157A	p.S386X	TCATTTCAGAAGT	.	159	60	127	0	.	227	A	20438493	C	A	20438493	4	1	131	1	0	0	0	0	0	1	0	0	7901	838	29	3	1191	3	ITGB8	7	20438493	Nonsense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	14411841	20438493	138700170	66	16637											
EVX1	2128	broad.mit.edu;mdanderson.org	37	7	27285622	27285622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EVX1	NM_001989	exon3	c.G802C	p.G268R	GCGGGCGGCCTGC	.	11	6	31	0	.	91	C	27285622	G	C	27285622	3	2	131	1	0	0	0	0	1	0	0	0	5294	1116	39	4	812	4	EVX1	7	27285622	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	6847129	27285622	131853041	67	16638											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44555505	44555505	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPC1L1	NM_013389	exon19	c.G3774A	p.K1258K	CTGGGCCTTGGCG	.	93	38	68	0	.	94	T	44555505	C	T	44555505	2	4	131	1	0	0	0	0	0	0	0	1	10571	680	24	3		3	NPC1L1	7	44555505	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	17269883	44555505	114583158	68	16639											
TYW1	55253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66660199	66660199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TYW1	NM_018264	exon15	c.A1852T	p.M618L	CTTACCATGGCCC	.	227	77	179	1	.	91	T	66660199	A	T	66660199	3	4	131	1	0	0	0	0	1	0	0	0	16815	217	8	4	1910	4	TYW1	7	66660199	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	22104694	66660199	92478464	69	16640											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83590840	83590840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEMA3A	NM_006080	exon17	c.C2163A	p.F721L	TTCACAGAACTCA	.	549	109	238	0	.	156	T	83590840	G	T	83590840	3	4	131	1	0	0	0	0	1	0	0	0	14024	933	33	3	156	3	SEMA3A	7	83590840	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	16930641	83590840	75547823	70	16641											
CHRM2	1129	ucsc.edu;mdanderson.org	37	7	136701056	136701056	+	RNA	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHRM2	.	.	.	.	GCTTGAGAAGAAT	.	232	54	170	0	.	94	T	136701056	G	T	136701056	1	4	131	0	1	0	0	0	0	0	0	0	3377	957	33	3		3	CHRM2	7	136701056	RNA	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	53110216	136701056	22437607	71	16642											
SSBP1	6742	hgsc.bcm.edu;bcgsc.ca	37	7	141441987	141441987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SSBP1	NM_001256513	exon3	c.A43G	p.R15G	TTTGTAAGACATG	.	61	4	41	0	.	91	G	141441987	A	G	141441987	3	3	131	1	0	0	0	0	1	0	0	0	15178	64	3	2	49	2	SSBP1	7	141441987	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	4740931	141441987	17696676	72	16643											
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150171348	150171348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GIMAP8	NM_175571	exon4	c.A931G	p.N311D	TTAAAGAACATTG	.	126	31	63	0	.	95	G	150171348	A	G	150171348	3	3	131	1	0	0	0	0	1	0	0	0	6385	246	9	2	941	2	GIMAP8	7	150171348	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	8729361	150171348	8967315	73	16644											
INSIG1	3638	hgsc.bcm.edu;bcgsc.ca	37	7	155090257	155090257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	INSIG1	NM_198337	exon2	c.A262G	p.S88G	CAGAGGAGCCTCG	.	77	4	59	0	.	90	G	155090257	A	G	155090257	3	3	131	1	0	0	0	0	1	0	0	0	7765	304	11	2	264	2	INSIG1	7	155090257	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	4918909	155090257	4048406	74	16645											
VPS37A	137492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17132309	17132309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VPS37A	NM_152415	exon5	c.C484A	p.P162T	CCATATCCTCCAC	.	117	64	174	0	.	90	A	17132309	C	A	17132309	3	1	131	1	0	0	0	0	1	0	0	0	17202	855	30	3	502	3	VPS37A	8	17132309	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		17132309	129231713	75	16646											
EXTL3	2137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28575571	28575571	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EXTL3	NM_001440	exon3	c.G1995T	p.V665V	CACGGTGGTGATG	.	165	94	222	1	.	92	T	28575571	G	T	28575571	2	4	131	1	0	0	0	0	0	0	0	1	5327	1335	47	3		3	EXTL3	8	28575571	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	11443262	28575571	117788451	76	16647											
AP3M2	10947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42022975	42022975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3M2	NM_001134296	exon7	c.C700T	p.H234Y	AGCTTCCATCCTT	.	329	139	245	0	.	90	T	42022975	C	T	42022975	3	4	131	1	0	0	0	0	1	0	0	0	748	594	21	3	718	3	AP3M2	8	42022975	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	13447404	42022975	104341047	77	16648											
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	42939883	42939883	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FNTA	NM_002027	exon8	c.T876C	p.Y292Y	CAAATATCCTAAT	.	104	6	89	0	.	91	C	42939883	T	C	42939883	2	2	131	1	0	0	0	0	0	0	0	1	5977	1442	50	2		2	FNTA	8	42939883	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	916908	42939883	103424139	78	16649											
PCMTD1	115294	hgsc.bcm.edu;bcgsc.ca	37	8	52746162	52746162	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCMTD1	NM_052937	exon4	c.A498G	p.G166G	TCCAGCTCCACAA	.	74	4	84	0	.	68	C	52746162	T	C	52746162	2	2	131	1	0	0	0	0	0	0	0	1	11586	1538	54	2		2	PCMTD1	8	52746162	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	9806279	52746162	93617860	79	16650											
RP1	6101	hgsc.bcm.edu;bcgsc.ca	37	8	55537397	55537397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RP1	NM_006269	exon4	c.A955G	p.I319V	GATGATATTGAGA	.	94	4	79	0	.	102	G	55537397	A	G	55537397	3	3	131	1	0	0	0	0	1	0	0	0	13532	449	16	2	965	2	RP1	8	55537397	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	2791235	55537397	90826625	80	16651											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77616371	77616371	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon2	c.G48A	p.Q16Q	TGGGCAGAGCACA	.	144	63	126	0	.	98	A	77616371	G	A	77616371	2	1	131	1	0	0	0	0	0	0	0	1	17632	933	33	3		3	ZFHX4	8	77616371	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	22078974	77616371	68747651	81	16652											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77768488	77768488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon10	c.G9331A	p.G3111R	CTCCCCGGAATGA	.	69	5	66	0	.	98	A	77768488	G	A	77768488	3	1	131	1	0	0	0	0	1	0	0	0	17632	1117	39	1	9365	1	ZFHX4	8	77768488	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	152117	77768488	68595534	82	16653											
SAMD12	401474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119452108	119452108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SAMD12	NM_207506	exon3	c.G285C	p.Q95H	GTAGATCTGATAC	.	176	70	172	0	.	227	G	119452108	C	G	119452108	3	3	131	1	0	0	0	0	1	0	0	0	13817	912	32	4	355	4	SAMD12	8	119452108	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	41683620	119452108	26911914	83	16654											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123964092	123964092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZHX2	NM_014943	exon3	c.A342T	p.E114D	TGCAGAATGTAAC	.	75	21	43	0	.	227	T	123964092	A	T	123964092	3	4	131	1	0	0	0	0	1	0	0	0	17673	98	4	4	344	4	ZHX2	8	123964092	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	4511984	123964092	22399930	84	16655											
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	135545117	135545124	+	Frame_Shift_Del	DEL	CACGTTGG	CACGTTGG	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CACGTTGG	CACGTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFAT	NM_020863	exon12	c.3068_3075del	p.1023_1025del	GGTGCCCACGTTG	.	64	10	66	0	.	90	-	135545124	CACGTTGG	-	135545117	7	5	131	1	0	1	0	1	0	0	0	0	17629	581	21	0	676	0	ZFAT	8	135545117	Frame_Shift_Del	DEL	CACGTTGG	TCGA-FV-A2QR-01A-11D-A20W-10	11581025	135545117	10818905	85	16656											
GLDC	2731	hgsc.bcm.edu;bcgsc.ca	37	9	6554742	6554742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GLDC	NM_000170	exon19	c.T2242C	p.S748P	GGTGCGAGACATC	.	74	5	52	0	.	92	G	6554742	A	G	6554742	3	3	131	1	0	0	0	0	1	0	0	0	6433	304	11	2	848	2	GLDC	9	6554742	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10		6554742	134658689	86	16657											
PLIN2	123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19116605	19116605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLIN2	NM_001122	exon8	c.C955G	p.Q319E	GCTGCTGAGTCAG	.	217	97	200	0	.	92	C	19116605	G	C	19116605	3	2	131	1	0	0	0	0	1	0	0	0	12090	1299	45	4	362	4	PLIN2	9	19116605	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	12561863	19116605	122096826	87	16658											
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414041	20414041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLLT3	NM_004529	exon5	c.A803G	p.N268S	AGTAAGTTACTAT	.	451	179	439	1	.	660	C	20414041	T	C	20414041	3	2	131	1	0	0	0	0	1	0	0	0	9628	1725	60	2	931	2	MLLT3	9	20414041	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	1297436	20414041	120799390	88	16659											
IFNA6	3443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21350645	21350645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFNA6	NM_021002	exon1	c.A242C	p.H81P	ACCTCATGGAGGA	.	239	110	193	0	.	68	G	21350645	T	G	21350645	3	3	131	1	0	0	0	0	1	0	0	0	7541	1464	51	5	329	5	IFNA6	9	21350645	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	936604	21350645	119862786	89	16660											
TXN	7295	hgsc.bcm.edu;bcgsc.ca	37	9	113018699	113018699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TXN	NM_001244938	exon1	c.A17G	p.E6G	TTGCTCTCGATCT	.	65	6	52	0	.	90	C	113018699	T	C	113018699	3	2	131	1	0	0	0	0	1	0	0	0	16787	1551	54	2	320	2	TXN	9	113018699	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	91668054	113018699	28194732	90	16661											
HSDL2	84263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	115232768	115232768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSDL2	NM_032303	exon11	c.A1201G	p.M401V	GGTAACATGGCCC	.	42	4	54	0	.	90	G	115232768	A	G	115232768	3	3	131	1	0	0	0	0	1	0	0	0	7394	217	8	2	1243	2	HSDL2	9	115232768	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	2214069	115232768	25980663	91	16662											
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117015214	117015214	+	Splice_Site	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL27A1	NM_032888	exon27	c.3141+2T>A	.	CCCAGGTAAGCAA	.	166	58	128	0	.	94	A	117015214	T	A	117015214	5	1	131	1	0	0	0	0	0	0	1	0	3685	1652	57	4	3249	4	COL27A1	9	117015214	Splice_Site	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	1782446	117015214	24198217	92	16663											
TSC1	7248	hgsc.bcm.edu;bcgsc.ca	37	9	135798881	135798881	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TSC1	NM_001162427	exon6	c.211-2A>G	.	TCCATCTGCAGGA	.	127	7	119	0	.	1906	C	135798881	T	C	135798881	5	2	131	1	0	0	0	0	0	0	1	0	16602	1594	55	2	3204	2	TSC1	9	135798881	Splice_Site	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	18783667	135798881	5414550	93	16664											
C9orf173	441476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140147365	140147365	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C9orf173	NM_001004353	exon5	c.G744A	p.S248S	CCGCTCGCCGGCC	.	70	36	63	0	.	46	A	140147365	G	A	140147365	2	1	131	1	0	0	0	0	0	0	0	1	2472	1074	38	1		1	C9orf173	9	140147365	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	4348484	140147365	1066066	94	16665											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70694063	70694063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DDX50	NM_024045	exon9	c.C1348T	p.R450C	GCTGCCCGTGGTT	.	66	24	52	0	.	91	T	70694063	C	T	70694063	3	4	131	1	0	0	0	0	1	0	0	0	4368	652	23	1	1382	1	DDX50	10	70694063	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		70694063	64840684	95	16666											
DUPD1	338599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	76818256	76818256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DUPD1	NM_001003892	exon1	c.T17A	p.V6E	GTCTTCACTTCTC	.	79	23	53	0	.	92	T	76818256	A	T	76818256	3	4	131	1	0	0	0	0	1	0	0	0	4804	159	6	4	657	4	DUPD1	10	76818256	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	6124193	76818256	58716491	96	16667											
HPSE2	60495	hgsc.bcm.edu;bcgsc.ca	37	10	100904083	100904083	+	Silent	SNP	C	C	T	rs200038077		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HPSE2	NM_001166246	exon3	c.G522A	p.L174L	GAGCTCCAGCATA	.	62	4	69	0	C|0.999;T|0.001	91	T	100904083	C	T	100904083	2	4	131	1	0	0	0	0	0	0	0	1	7345	581	21	3		3	HPSE2	10	100904083	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	24085827	100904083	34630664	97	16668											
SMC3	9126	hgsc.bcm.edu;bcgsc.ca	37	10	112356255	112356255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SMC3	NM_005445	exon19	c.A2063G	p.E688G	AAGAAGAACTAGG	.	61	4	61	0	.	92	G	112356255	A	G	112356255	3	3	131	1	0	0	0	0	1	0	0	0	14784	246	9	2	2137	2	SMC3	10	112356255	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	11452172	112356255	23178492	98	16669											
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	128835998	128835998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DOCK1	NM_001380	exon19	c.T1865C	p.L622P	TGGGGCTCTTGAA	.	46	4	78	0	.	698	C	128835998	T	C	128835998	3	2	131	1	0	0	0	0	1	0	0	0	4684	1551	54	2	1939	2	DOCK1	10	128835998	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	16479743	128835998	6698749	99	16670											
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4944635	4944635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR51G1	NM_001005237	exon1	c.T935C	p.I312T	GACTTTATAAACT	.	117	16	113	0	.	70	G	4944635	A	G	4944635	3	3	131	1	0	0	0	0	1	0	0	0	11098	449	16	2	32	2	OR51G1	11	4944635	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10		4944635	130061881	100	16671											
EIF4G2	1982	hgsc.bcm.edu;bcgsc.ca	37	11	10824623	10824623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EIF4G2	NM_001042559	exon11	c.A950G	p.D317G	CCATTGTCAAGAA	.	125	5	99	0	.	91	C	10824623	T	C	10824623	3	2	131	1	0	0	0	0	1	0	0	0	5037	1667	58	2	1821	2	EIF4G2	11	10824623	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	5879988	10824623	124181893	101	16672											
OR4S2	219431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55418935	55418935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR4S2	NM_001004059	exon1	c.G556T	p.A186S	AAACTTGCCTGCA	.	301	114	235	0	.	71	T	55418935	G	T	55418935	3	4	131	1	0	0	0	0	1	0	0	0	11083	1319	46	3	558	3	OR4S2	11	55418935	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	44594312	55418935	79587581	102	16673											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58979671	58979671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MPEG1	NM_001039396	exon1	c.C668T	p.A223V	AAGGAGGCCCTGA	.	49	21	44	0	.	70	A	58979671	G	A	58979671	3	1	131	1	0	0	0	0	1	0	0	0	9723	1203	42	3	1486	3	MPEG1	11	58979671	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	3560736	58979671	76026845	103	16674											
SLC22A11	55867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64326710	64326710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC22A11	NM_018484	exon2	c.G497A	p.R166Q	CCTACCGGTGAGT	.	98	39	67	0	.	91	A	64326710	G	A	64326710	3	1	131	1	0	0	0	0	1	0	0	0	14442	1130	39	1	503	1	SLC22A11	11	64326710	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	5347039	64326710	70679806	104	16675											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73076917	73076917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF17	NM_014786	exon20	c.C5920A	p.R1974S	CACGTCCGCTTCT	.	90	28	72	0	.	227	A	73076917	C	A	73076917	3	1	131	1	0	0	0	0	1	0	0	0	900	652	23	1	5998	1	ARHGEF17	11	73076917	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	8750207	73076917	61929599	105	16676											
KDM4D	55693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	94732090	94732104	+	In_Frame_Del	DEL	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KDM4D	NM_018039	exon3	c.1554_1568del	p.518_523del	GTGCAGCTGGGCC	.	135	20	126	0	.	226	-	94732104	CTGGGCCCCTGTGCC	-	94732090	7	5	131	1	0	1	0	1	0	0	0	0	8131	796	28	0	1556	0	KDM4D	11	94732090	In_Frame_Del	DEL	CTGGGCCCCTGTGCC	TCGA-FV-A2QR-01A-11D-A20W-10	21655173	94732090	40274426	106	16677											
MMP13	4322	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102826137	102826137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MMP13	NM_002427	exon2	c.G206A	p.R69Q	ATTTCTCGGAGCC	.	220	84	134	2	.	229	T	102826137	C	T	102826137	3	4	131	1	0	0	0	0	1	0	0	0	9652	884	31	1	1245	1	MMP13	11	102826137	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	8094047	102826137	32180379	107	16678											
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117222640	117222640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP164	NM_001271933	exon4	c.A329C	p.K110T	CCATTAAGAAGAA	.	87	6	57	0	.	69	C	117222640	A	C	117222640	3	2	131	1	0	0	0	0	1	0	0	0	3249	72	3	5	339	5	CEP164	11	117222640	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	14396503	117222640	17783876	108	16679											
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118764607	118764607	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CXCR5	NM_001716	exon2	c.G354A	p.G118G	CCTGGGGACCTTC	.	177	42	173	0	.	721	A	118764607	G	A	118764607	2	1	131	1	0	0	0	0	0	0	0	1	4094	1161	41	3		3	CXCR5	11	118764607	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	1541967	118764607	16241909	109	16680											
ARHGAP32	9743	hgsc.bcm.edu;bcgsc.ca	37	11	128932247	128932247	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGAP32	NM_001142685	exon9	c.A849G	p.G283G	AATGTCTCCCACC	.	47	4	43	0	.	231	C	128932247	T	C	128932247	2	2	131	1	0	0	0	0	0	0	0	1	881	1538	54	2		2	ARHGAP32	11	128932247	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	10167640	128932247	6074269	110	16681											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	333670	333670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC6A13	NM_016615	exon10	c.T1070C	p.L357P	AAAGCCAGGCCAG	.	176	63	152	0	.	90	G	333670	A	G	333670	3	3	131	1	0	0	0	0	1	0	0	0	14676	188	7	2	762	2	SLC6A13	12	333670	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10		333670	133518225	111	16682											
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7510070	7510070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD163L1	NM_174941	exon19	c.A4292T	p.N1431I	CCATGGTTGGGGG	.	74	24	52	0	.	100	A	7510070	T	A	7510070	3	1	131	1	0	0	0	0	1	0	0	0	2968	1725	60	4	73	4	CD163L1	12	7510070	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	7176400	7510070	126341825	112	16683											
TAS2R7	50837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10954420	10954420	+	Silent	SNP	G	G	A	rs201086265	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAS2R7	NM_023919	exon1	c.C750T	p.S250S	GAGAAAGGACAAA	.	177	69	112	0	G|0.997;A|0.003	91	A	10954420	G	A	10954420	2	1	131	1	0	0	0	0	0	0	0	1	15583	987	35	3		3	TAS2R7	12	10954420	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	3444350	10954420	122897475	113	16684											
CSRNP2	81566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51457625	51457625	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1536T	p.T512T	ATTGTCCGTGCGG	.	152	71	154	0	.	90	A	51457625	C	A	51457625	2	1	131	1	0	0	0	0	0	0	0	1	3964	639	23	1		1	CSRNP2	12	51457625	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	40503205	51457625	82394270	114	16685			1	14		2	2	17	C		9.044487e-05
CSRNP2	81566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51457641	51457641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1520T	p.S507I	GGGAGGCTTGAGG	.	169	76	166	0	.	90	A	51457641	C	A	51457641	3	1	131	1	0	0	0	0	1	0	0	0	3964	797	28	3	115	3	CSRNP2	12	51457641	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	16	51457641	82394254	115	16686			1	14		2	2	17	C		9.044487e-05
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51748219	51748219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GALNT6	NM_007210	exon12	c.C1813A	p.P605T	TGGCTGGCTTTTT	.	210	23	159	1	.	92	T	51748219	G	T	51748219	3	4	131	1	0	0	0	0	1	0	0	0	6217	1203	42	3	59	3	GALNT6	12	51748219	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	290578	51748219	82103676	116	16687											
TBK1	29110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64889483	64889483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBK1	NM_013254	exon15	c.G1648C	p.E550Q	AGTGTAGAAAAAC	.	109	50	58	0	.	1459	C	64889483	G	C	64889483	3	2	131	1	0	0	0	0	1	0	0	0	15634	943	33	4	1702	4	TBK1	12	64889483	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	13141264	64889483	68962412	117	16688											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67701207	67701207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CAND1	NM_018448	exon11	c.C2960T	p.T987M	TGGTTACGGCTGT	.	82	34	57	0	.	516	T	67701207	C	T	67701207	3	4	131	1	0	0	0	0	1	0	0	0	2615	536	19	1	3002	1	CAND1	12	67701207	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	2811724	67701207	66150688	118	16689											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513703	78513703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAV3	NM_014903	exon15	c.A3727G	p.I1243V	CCAGATATTGCCT	.	200	75	155	0	.	279	G	78513703	A	G	78513703	3	3	131	1	0	0	0	0	1	0	0	0	10185	449	16	2	3785	2	NAV3	12	78513703	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	10812496	78513703	55338192	119	16690											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88486591	88486591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP290	NM_025114	exon29	c.G3328T	p.D1110Y	GTGCATCCAAATT	.	177	64	176	0	.	96	A	88486591	C	A	88486591	3	1	131	1	0	0	0	0	1	0	0	0	3253	855	30	3	4215	3	CEP290	12	88486591	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	9972888	88486591	45365304	120	16691											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120172998	120172998	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIT	NM_001206999	exon25	c.G3123A	p.T1041T	TCGTTCCGTGATC	.	450	155	371	0	.	399	T	120172998	C	T	120172998	2	4	131	1	0	0	0	0	0	0	0	1	3438	639	23	1		1	CIT	12	120172998	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	31686407	120172998	13678897	121	16692											
EP400	57634	hgsc.bcm.edu;bcgsc.ca	37	12	132527997	132527997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EP400	NM_015409	exon33	c.T6356C	p.F2119S	CTGACTTCATGGA	.	82	4	82	0	.	520	C	132527997	T	C	132527997	3	2	131	1	0	0	0	0	1	0	0	0	5149	1783	62	2	6479	2	EP400	12	132527997	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	12354999	132527997	1323898	122	16693											
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20567643	20567643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZMYM2	NM_001190964	exon4	c.C431T	p.P144L	GACCTCCTGAGAC	.	113	43	91	0	.	685	T	20567643	C	T	20567643	3	4	131	1	0	0	0	0	1	0	0	0	17697	681	24	3	433	3	ZMYM2	13	20567643	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		20567643	94602235	123	16694											
ATP12A	479	hgsc.bcm.edu;bcgsc.ca	37	13	25266681	25266681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP12A	NM_001185085	exon9	c.A1201G	p.T401A	ACTGGGACACTGA	.	125	7	101	0	.	137	G	25266681	A	G	25266681	3	3	131	1	0	0	0	0	1	0	0	0	1122	275	10	2	1235	2	ATP12A	13	25266681	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	4699038	25266681	89903197	124	16695											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32937516	32937516	+	Missense_Mutation	SNP	A	A	G	rs80359064		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon18	c.A8177G	p.Y2726C	GGTGGTATGCTGT	.	168	66	139	0	.	3153	G	32937516	A	G	32937516	3	3	131	1	0	0	0	0	1	0	0	0	1499	449	16	2	8243	2	BRCA2	13	32937516	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	7670835	32937516	82232362	125	16696											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32953916	32953924	+	In_Frame_Del	DEL	GATTTATAT	GATTTATAT	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GATTTATAT	GATTTATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon23	c.8983_8991del	p.2995_2997del	TCATCAGATTTAT	.	168	17	181	0	.	3153	-	32953924	GATTTATAT	-	32953916	7	5	131	1	0	1	0	1	0	0	0	0	1499	942	33	0	9069	0	BRCA2	13	32953916	In_Frame_Del	DEL	GATTTATAT	TCGA-FV-A2QR-01A-11D-A20W-10	16400	32953916	82215962	126	16697											
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41941630	41941630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAA16	NM_024561	exon14	c.A1595G	p.K532R	TGAGAAAGATGAC	.	91	4	74	0	.	90	G	41941630	A	G	41941630	3	3	131	1	0	0	0	0	1	0	0	0	10119	72	3	2	1682	2	NAA16	13	41941630	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	8987714	41941630	73228248	127	16698											
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103701761	103701761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC10A2	NM_000452	exon5	c.A797G	p.N266S	TGCGTGTTCTGCA	.	187	70	143	0	.	94	C	103701761	T	C	103701761	3	2	131	1	0	0	0	0	1	0	0	0	14374	1725	60	2	257	2	SLC10A2	13	103701761	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	61760131	103701761	11468117	128	16699											
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001082488	exon8	c.T653C	p.I218T	GACTTATCAAGAC	.	875	334	674	0	.	.	C	24517998	T	C	24517998	3	2	131	1	0	0	0	0	1	0	0	0	4493	1435	50	2	683	2	DHRS4L1	14	24517998	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		24517998	82831542	129	16700											
NYNRIN	57523	hgsc.bcm.edu;bcgsc.ca	37	14	24879219	24879219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NYNRIN	NM_025081	exon4	c.A2219C	p.Q740P	AGTTTCAGATGGA	.	138	8	98	0	.	3	C	24879219	A	C	24879219	3	2	131	1	0	0	0	0	1	0	0	0	10796	188	7	5	2229	5	NYNRIN	14	24879219	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	361221	24879219	82470321	130	16701											
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68220472	68220472	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFYVE26	NM_015346	exon39	c.A7140G	p.G2380G	TTTCCCTCCCAGC	.	77	4	61	0	.	162	C	68220472	T	C	68220472	2	2	131	1	0	0	0	0	0	0	0	1	17665	1538	54	2		2	ZFYVE26	14	68220472	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	43341253	68220472	39129068	131	16702											
C14orf1	11161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76117958	76117958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C14orf1	NM_007176	exon5	c.G363A	p.M121I	GACCAGCATACCC	.	104	37	76	0	.	90	T	76117958	C	T	76117958	3	4	131	1	0	0	0	0	1	0	0	0	1733	710	25	3	63	3	C14orf1	14	76117958	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	7897486	76117958	31231582	132	16703											
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	92953018	92953024	+	Frame_Shift_Del	DEL	TATCGGA	TATCGGA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TATCGGA	TATCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC24A4	NM_153646	exon14	c.1431_1437del	p.477_479del	GACTATTATCGGA	.	242	38	226	0	.	93	-	92953024	TATCGGA	-	92953018	7	5	131	1	0	1	0	1	0	0	0	0	14468	1742	61	0	1434	0	SLC24A4	14	92953018	Frame_Shift_Del	DEL	TATCGGA	TCGA-FV-A2QR-01A-11D-A20W-10	16835060	92953018	14396522	133	16704											
YY1	7528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100742844	100742844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	YY1	NM_003403	exon4	c.C921G	p.F307L	GATGTTCAGGGAT	.	105	27	85	0	.	226	G	100742844	C	G	100742844	3	3	131	1	0	0	0	0	1	0	0	0	17504	825	29	4	935	4	YY1	14	100742844	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	7789826	100742844	6606696	134	16705											
C15orf52	388115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40628995	40628995	+	Silent	SNP	T	T	C	rs143912259		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C15orf52	NM_207380	exon8	c.A894G	p.K298K	CTGTAGTTTCTGG	.	74	39	64	0	T|1.000;C|0.000	153	C	40628995	T	C	40628995	2	2	131	1	0	0	0	0	0	0	0	1	1800	1722	60	2		2	C15orf52	15	40628995	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		40628995	61902397	135	16706											
SCAMP5	192683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75310253	75310253	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCAMP5	NM_001178111	exon6	c.C336T	p.F112F	TACCTTCATGGCT	.	135	50	121	0	.	23	T	75310253	C	T	75310253	2	4	131	1	0	0	0	0	0	0	0	1	13874	825	29	3		3	SCAMP5	15	75310253	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	34681258	75310253	27221139	136	16707											
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10527419	10527419	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATF7IP2	NM_024997	exon4	c.G873A	p.E291E	AAACGAGGAAAAT	.	190	47	168	0	.	186	A	10527419	G	A	10527419	2	1	131	1	0	0	0	0	0	0	0	1	1088	991	35	3		3	ATF7IP2	16	10527419	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10		10527419	79827334	137	16708											
TNRC6A	27327	hgsc.bcm.edu;bcgsc.ca	37	16	24801289	24801289	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6A	NM_014494	exon6	c.A1326G	p.Q442Q	TGGTCAACCTCAA	.	83	4	72	0	.	92	G	24801289	A	G	24801289	2	3	131	1	0	0	0	0	0	0	0	1	16337	40	2	2		2	TNRC6A	16	24801289	Silent	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	14273870	24801289	65553464	138	16709											
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30793663	30793663	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001080417	exon3	c.C1986T	p.Y662Y	GCAGATGTAGGTC	.	56	18	58	0	.	.	A	30793663	G	A	30793663	2	1	131	1	0	0	0	0	0	0	0	1	18050	1372	48	3		3	ZNF629	16	30793663	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	5992374	30793663	59561090	139	16710											
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49412388	49412388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf78	NM_144602	exon3	c.G278A	p.G93E	CCTTAGGAAAGAG	.	43	14	42	0	.	90	A	49412388	G	A	49412388	3	1	131	1	0	0	0	0	1	0	0	0	1835	1174	41	3	288	3	C16orf78	16	49412388	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	18618725	49412388	40942365	140	16711											
ZNF319	57567	hgsc.bcm.edu;bcgsc.ca	37	16	58031121	58031121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF319	NM_020807	exon2	c.T1049C	p.M350T	AAGCCCATGGGGC	.	75	5	88	0	.	90	G	58031121	A	G	58031121	3	3	131	1	0	0	0	0	1	0	0	0	17834	217	8	2	703	2	ZNF319	16	58031121	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	8618733	58031121	32323632	141	16712											
HYDIN	54768	hgsc.bcm.edu;bcgsc.ca	37	16	70884467	70884467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HYDIN	NM_001270974	exon74	c.A12535G	p.T4179A	TTAATGTCACAGG	.	212	38	149	0	.	92	C	70884467	T	C	70884467	3	2	131	1	0	0	0	0	1	0	0	0	7467	1667	58	2	2882	2	HYDIN	16	70884467	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	12853346	70884467	19470286	142	16713											
ADAMTS18	170692	hgsc.bcm.edu;bcgsc.ca	37	16	77326981	77326981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAMTS18	NM_199355	exon20	c.T3181C	p.W1061R	CGCTCCACGAAGA	.	63	4	44	0	.	1036	G	77326981	A	G	77326981	3	3	131	1	0	0	0	0	1	0	0	0	263	159	6	2	500	2	ADAMTS18	16	77326981	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	6442514	77326981	13027772	143	16714											
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81095083	81095083	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf46	NM_001100873	exon3	c.C871T	p.L291L	CGGTCAGCAGGGA	.	208	67	184	0	.	90	A	81095083	G	A	81095083	2	1	131	1	0	0	0	0	0	0	0	1	1815	962	34	3		3	C16orf46	16	81095083	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	3768102	81095083	9259670	144	16715											
ADAD2	161931	hgsc.bcm.edu;bcgsc.ca	37	16	84229269	84229269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAD2	NM_139174	exon7	c.A1264G	p.S422G	TACATCAGCAACA	.	70	4	118	0	.	68	G	84229269	A	G	84229269	3	3	131	1	0	0	0	0	1	0	0	0	232	188	7	2	1290	2	ADAD2	16	84229269	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	3134186	84229269	6125484	145	16716											
PELP1	27043	hgsc.bcm.edu;bcgsc.ca	37	17	4585844	4585844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PELP1	NM_014389	exon5	c.A595G	p.M199V	CCTTCATTCCTTC	.	61	4	75	0	.	24	C	4585844	T	C	4585844	3	2	131	1	0	0	0	0	1	0	0	0	11725	1493	52	2	2849	2	PELP1	17	4585844	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		4585844	76609366	146	16717											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721766	7721766	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH2	NM_020877	exon68	c.T10524C	p.A3508A	CTTTGCTGTTAAA	.	57	33	80	0	.	102	C	7721766	T	C	7721766	2	2	131	1	0	0	0	0	0	0	0	1	4602	1567	55	2		2	DNAH2	17	7721766	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	3135922	7721766	73473444	147	16718											
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7842848	7842848	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CNTROB	NM_001037144	exon8	c.T945C	p.A315A	GCAAGCTCTGACT	.	85	6	135	0	.	153	C	7842848	T	C	7842848	2	2	131	1	0	0	0	0	0	0	0	1	3651	1538	54	2		2	CNTROB	17	7842848	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	121082	7842848	73352362	148	16719											
ULK2	9706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	19700945	19700945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ULK2	NM_001142610	exon18	c.A1573G	p.R525G	GCAGTCTAGCACC	.	33	4	42	0	.	334	C	19700945	T	C	19700945	3	2	131	1	0	0	0	0	1	0	0	0	16973	1530	53	2	1577	2	ULK2	17	19700945	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	11858097	19700945	61494265	149	16720											
CPD	1362	hgsc.bcm.edu;bcgsc.ca	37	17	28770949	28770949	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CPD	NM_001304	exon11	c.T2503C	p.L835L	CGTCTCTTGGTTC	.	90	5	61	0	.	92	C	28770949	T	C	28770949	2	2	131	1	0	0	0	0	0	0	0	1	3798	1606	56	2		2	CPD	17	28770949	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	9070004	28770949	52424261	150	16721											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29576138	29576138	+	Splice_Site	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NF1	NM_000267	exon30	c.4110+1G>C	.	TACCAGGTATGCT	.	94	28	87	0	.	3353	C	29576138	G	C	29576138	5	2	131	1	0	0	0	0	0	0	1	0	10356	1275	44	4	4290	4	NF1	17	29576138	Splice_Site	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	805189	29576138	51619072	151	16722											
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34073039	34073039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GAS2L2	NM_139285	exon6	c.T1477C	p.S493P	TTGGAGAACGGAC	.	77	4	53	0	.	227	G	34073039	A	G	34073039	3	3	131	1	0	0	0	0	1	0	0	0	6247	246	9	2	1169	2	GAS2L2	17	34073039	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	4496901	34073039	47122171	152	16723											
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39778675	39778675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRT17	NM_000422	exon3	c.G604T	p.A202S	GGTCGGCTCTGGC	.	608	224	438	0	.	92	A	39778675	C	A	39778675	3	1	131	1	0	0	0	0	1	0	0	0	8454	797	28	3	718	3	KRT17	17	39778675	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	5705636	39778675	41416535	153	16724											
SPOP	8405	hgsc.bcm.edu;bcgsc.ca	37	17	47684733	47684733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPOP	NM_001007228	exon8	c.A716G	p.N239S	ACTCGATTCTATG	.	67	4	81	0	.	660	C	47684733	T	C	47684733	3	2	131	1	0	0	0	0	1	0	0	0	15083	1507	52	2	420	2	SPOP	17	47684733	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	7906058	47684733	33510477	154	16725											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65105654	65105654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HELZ	NM_014877	exon29	c.C4067T	p.P1356L	CGATTAGGGATTG	.	501	131	305	0	.	92	A	65105654	G	A	65105654	3	1	131	1	0	0	0	0	1	0	0	0	7049	1000	35	3	1781	3	HELZ	17	65105654	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	17420921	65105654	16089556	155	16726											
CYGB	114757	hgsc.bcm.edu;bcgsc.ca	37	17	74527573	74527573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CYGB	NM_134268	exon2	c.T344C	p.L115P	TGCTTGAGGGCGT	.	119	5	57	0	.	90	G	74527573	A	G	74527573	3	3	131	1	0	0	0	0	1	0	0	0	4139	304	11	2	240	2	CYGB	17	74527573	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	9421919	74527573	6667637	156	16727											
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78972946	78972946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHMP6	NM_024591	exon8	c.C599G	p.A200G	TGGCAGCTTCGTA	.	128	37	95	0	.	91	G	78972946	C	G	78972946	3	3	131	1	0	0	0	0	1	0	0	0	3360	797	28	4	629	4	CHMP6	17	78972946	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	4445373	78972946	2222264	157	16728											
ASXL3	80816	hgsc.bcm.edu;bcgsc.ca	37	18	31326119	31326119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASXL3	NM_030632	exon12	c.T6307C	p.Y2103H	GTTTCCTATGACC	.	80	4	48	0	.	49	C	31326119	T	C	31326119	3	2	131	1	0	0	0	0	1	0	0	0	1068	1522	53	2	6353	2	ASXL3	18	31326119	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		31326119	46751129	158	16729											
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	56247584	56247584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALPK2	NM_052947	exon4	c.G424T	p.E142X	CCTTCTCATCAAT	.	306	125	270	1	.	765	A	56247584	C	A	56247584	4	1	131	1	0	0	0	0	0	1	0	0	545	835	29	3	6128	3	ALPK2	18	56247584	Nonsense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	24921465	56247584	21829664	159	16730											
PIGN	23556	hgsc.bcm.edu;bcgsc.ca	37	18	59713126	59713126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIGN	NM_176787	exon31	c.T2759C	p.L920P	AGTCTGAGTTTCT	.	94	5	77	0	.	227	G	59713126	A	G	59713126	3	3	131	1	0	0	0	0	1	0	0	0	11893	304	11	2	40	2	PIGN	18	59713126	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	3465542	59713126	18364122	160	16731											
ZSWIM4	65249	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13910558	13910558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZSWIM4	NM_023072	exon2	c.C178T	p.P60S	CGGGTGCCTGAGC	.	151	55	129	2	.	90	T	13910558	C	T	13910558	3	4	131	1	0	0	0	0	1	0	0	0	18240	739	26	3	184	3	ZSWIM4	19	13910558	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10		13910558	45218425	161	16732											
ZNF208	7757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22157531	22157531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF208	NM_007153	exon4	c.G305C	p.R102T	TCATACCTTCTCA	.	100	37	80	1	.	7	G	22157531	C	G	22157531	3	3	131	1	0	0	0	0	1	0	0	0	17763	681	24	4	3541	4	ZNF208	19	22157531	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	8246973	22157531	36971452	162	16733											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23938330	23938330	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_138286	exon2	c.G27T	p.V9V	TATGGCCACATCC	.	36	10	36	0	.	.	A	23938330	C	A	23938330	2	1	131	1	0	0	0	0	0	0	0	1	18085	581	21	3		3	ZNF681	19	23938330	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	1780799	23938330	35190653	163	16734											
CD22	933	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35832037	35832037	+	Silent	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD22	NM_001185100	exon7	c.C1503G	p.V501V	GAATGTCCAGTGT	.	122	58	127	1	.	526	G	35832037	C	G	35832037	2	3	131	1	0	0	0	0	0	0	0	1	2985	842	30	4		4	CD22	19	35832037	Silent	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	11893707	35832037	23296946	164	16735											
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36342181	36342181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPHS1	NM_004646	exon3	c.T380A	p.V127E	AGGATCACTCTGG	.	110	26	82	0	.	49	T	36342181	A	T	36342181	3	4	131	1	0	0	0	0	1	0	0	0	10582	159	6	4	3453	4	NPHS1	19	36342181	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	510144	36342181	22786802	165	16736											
HNRNPUL1	11100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41800283	41800283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HNRNPUL1	NM_007040	exon9	c.C1307A	p.T436K	AGACCACATGGGC	.	235	82	190	0	.	69	A	41800283	C	A	41800283	3	1	131	1	0	0	0	0	1	0	0	0	7274	478	17	3	1341	3	HNRNPUL1	19	41800283	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	5458102	41800283	17328700	166	16737											
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48565265	48565265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLA2G4C	NM_001159322	exon14	c.A1277G	p.D426G	AAAGGATCTCCGG	.	59	26	45	0	.	92	C	48565265	T	C	48565265	3	2	131	1	0	0	0	0	1	0	0	0	12003	1435	50	2	398	2	PLA2G4C	19	48565265	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	6764982	48565265	10563718	167	16738											
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57175640	57175640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF835	NM_001005850	exon2	c.G927T	p.Q309H	GCAGTCCTGGCAC	.	21	12	16	0	.	72	A	57175640	C	A	57175640	3	1	131	1	0	0	0	0	1	0	0	0	18183	680	24	3	688	3	ZNF835	19	57175640	Missense_Mutation	SNP	C	TCGA-FV-A2QR-01A-11D-A20W-10	8610375	57175640	1953343	168	16739											
PSMF1	9491	hgsc.bcm.edu;bcgsc.ca	37	20	1145055	1145055	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PSMF1	NM_006814	exon6	c.T699C	p.P233P	ACTTCCTCCAGGC	.	118	6	111	0	.	90	C	1145055	T	C	1145055	2	2	131	1	0	0	0	0	0	0	0	1	12710	1538	54	2		2	PSMF1	20	1145055	Silent	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		1145055	61880465	169	16740											
MYLK2	85366	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30409394	30409394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYLK2	NM_033118	exon4	c.A626G	p.E209G	TGGGAGAGAAAAC	.	182	70	150	1	.	760	G	30409394	A	G	30409394	3	3	131	1	0	0	0	0	1	0	0	0	10057	304	11	2	636	2	MYLK2	20	30409394	Missense_Mutation	SNP	A	TCGA-FV-A2QR-01A-11D-A20W-10	29264339	30409394	32616126	170	16741											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24582054	24582054	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SUSD2	NM_019601	exon9	c.G1410A	p.E470E	CGGAGAGTACGTG	.	220	52	136	0	.	91	A	24582054	G	A	24582054	2	1	131	1	0	0	0	0	0	0	0	1	15405	1020	36	3		3	SUSD2	22	24582054	Silent	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10		24582054	26722512	171	16742											
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31333805	31333805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MORC2	NM_014941	exon15	c.A1180G	p.I394V	TACCGATGGCAAT	.	228	110	140	0	.	92	C	31333805	T	C	31333805	3	2	131	1	0	0	0	0	1	0	0	0	9702	1464	51	2	1784	2	MORC2	22	31333805	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	6751751	31333805	19970761	172	16743											
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40660706	40660706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6B	NM_001162501	exon5	c.G472A	p.G158S	CTTGGAGGTGCTG	.	138	36	94	0	.	22	A	40660706	G	A	40660706	3	1	131	1	0	0	0	0	1	0	0	0	16338	1000	35	3	611	3	TNRC6B	22	40660706	Missense_Mutation	SNP	G	TCGA-FV-A2QR-01A-11D-A20W-10	9326901	40660706	10643860	173	16744											
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	31497178	31497178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DMD	NM_004006	exon58	c.A8590G	p.S2864G	GAGTACTCATGAT	.	93	4	72	0	.	265	C	31497178	T	C	31497178	3	2	131	1	0	0	0	0	1	0	0	0	4580	1551	54	2	2669	2	DMD	23	31497178	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10		31497178	123773382	174	16745											
KIAA1210	57481	hgsc.bcm.edu;bcgsc.ca	37	X	118221124	118221124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA1210	NM_020721	exon11	c.A4069G	p.K1357E	TCTGCTTTACAGG	.	92	4	43	0	.	67	C	118221124	T	C	118221124	3	2	131	1	0	0	0	0	1	0	0	0	8214	1850	64	2	1076	2	KIAA1210	23	118221124	Missense_Mutation	SNP	T	TCGA-FV-A2QR-01A-11D-A20W-10	86723946	118221124	37049436	175	16746											
TCEA3	6920	ucsc.edu;bcgsc.ca	37	1	23710871	23710871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_003196	exon10	c.G1006A	p.V336I	ATAAGACAAAGGT	.	42	4	43	0	.	.	T	23710871	C	T	23710871	3	4	132	1	0	0	0	0	1	0	0	0	15666	478	17	3	48	3	TCEA3	1	23710871	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		23710871	225539750	1	16747											
TCEB3	6924	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24078281	24078281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TCEB3	NM_003198	exon4	c.A1264G	p.M422V	ACAGATATGGAGG	.	43	31	62	0	.	91	G	24078281	A	G	24078281	3	3	132	1	0	0	0	0	1	0	0	0	15678	449	16	2	1278	2	TCEB3	1	24078281	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	367410	24078281	225172340	2	16748											
SLC16A1	6566	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113471853	113471853	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC16A1	NM_001166496	exon2	c.T78C	p.A26A	AATGAAAGCTCCA	.	30	5	37	0	.	514	G	113471853	A	G	113471853	2	3	132	1	0	0	0	0	0	0	0	1	14402	59	3	2		2	SLC16A1	1	113471853	Silent	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	89393572	113471853	135778768	3	16749											
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152327575	152327575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FLG2	NM_001014342	exon3	c.G2687A	p.G896D	CCAAAGCCACTGG	.	162	30	152	0	.	151	T	152327575	C	T	152327575	3	4	132	1	0	0	0	0	1	0	0	0	5923	739	26	3	4492	3	FLG2	1	152327575	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	38855722	152327575	96923046	4	16750											
S100A7	6278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153430321	153430321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	S100A7	NM_002963	exon3	c.G267T	p.Q89H	ATGGCTCTGCTTG	.	199	35	199	0	.	91	A	153430321	C	A	153430321	3	1	132	1	0	0	0	0	1	0	0	0	13783	912	32	3	42	3	S100A7	1	153430321	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	1102746	153430321	95820300	5	16751											
ETV3L	440695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157069139	157069139	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ETV3L	NM_001004341	exon2	c.C90T	p.A30A	CGACTCGGCTTTG	.	93	15	96	1	.	228	A	157069139	G	A	157069139	2	1	132	1	0	0	0	0	0	0	0	1	5280	1103	39	1		1	ETV3L	1	157069139	Silent	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	3638818	157069139	92181482	6	16752											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096333	167096333	+	Silent	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DUSP27	NM_001080426	exon5	c.G1965C	p.G655G	CAGCGGGAGCATT	.	92	17	69	0	.	71	C	167096333	G	C	167096333	2	2	132	1	0	0	0	0	0	0	0	1	4824	1161	41	4		4	DUSP27	1	167096333	Silent	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	10027194	167096333	82154288	7	16753											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	215932017	215932017	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	USH2A	NM_206933	exon58	c.C11309G	p.S3770X	GGTGTTGACATAG	.	82	12	94	0	.	115	C	215932017	G	C	215932017	4	2	132	1	0	0	0	0	0	1	0	0	17033	1294	45	4	4359	4	USH2A	1	215932017	Nonsense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	48835684	215932017	33318604	8	16754											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216495239	216495239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	USH2A	NM_007123	exon9	c.A1630G	p.T544A	CTTCAGTGAAGCT	.	121	92	172	0	.	115	C	216495239	T	C	216495239	3	2	132	1	0	0	0	0	1	0	0	0	17033	1696	59	2	14248	2	USH2A	1	216495239	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	563222	216495239	32755382	9	16755											
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	17877588	17877588	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SMC6	NM_001142286	exon22	c.C2500T	p.R834X	GTTCTCGTTTCTT	.	111	18	139	0	.	292	A	17877588	G	A	17877588	4	1	132	1	0	0	0	0	0	1	0	0	14787	1153	40	1	803	1	SMC6	2	17877588	Nonsense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10		17877588	225321785	10	16756											
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27156166	27156166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DPYSL5	NM_001253724	exon7	c.C755T	p.S252L	GTATCTCGGCTGG	.	118	55	119	0	.	92	T	27156166	C	T	27156166	3	4	132	1	0	0	0	0	1	0	0	0	4750	893	31	1	777	1	DPYSL5	2	27156166	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	9278578	27156166	216043207	11	16757											
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28825786	28825786	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PLB1	NM_153021	exon39	c.C2772T	p.A924A	GCAGGCCAGGTAG	.	29	11	30	0	.	141	T	28825786	C	T	28825786	2	4	132	1	0	0	0	0	0	0	0	1	12024	581	21	3		3	PLB1	2	28825786	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	1669620	28825786	214373587	12	16758											
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43458154	43458154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	THADA	NM_001083953	exon38	c.T5795G	p.L1932R	ACACTGAGAACTA	.	132	65	104	0	.	228	C	43458154	A	C	43458154	3	2	132	1	0	0	0	0	1	0	0	0	15837	304	11	5	70	5	THADA	2	43458154	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	14632368	43458154	199741219	13	16759											
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71043685	71043685	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CLEC4F	NM_173535	exon4	c.T828C	p.N276N	CAAACTATTTCTT	.	208	110	250	0	.	95	G	71043685	A	G	71043685	2	3	132	1	0	0	0	0	0	0	0	1	3516	446	16	2		2	CLEC4F	2	71043685	Silent	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	27585531	71043685	172155688	14	16760											
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71892431	71892431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DYSF	NM_001130987	exon47	c.A5314G	p.I1772V	GAAGAGATAGGTG	.	59	33	48	0	.	158	G	71892431	A	G	71892431	3	3	132	1	0	0	0	0	1	0	0	0	4859	333	12	2	5638	2	DYSF	2	71892431	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	848746	71892431	171306942	15	16761											
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75113781	75113781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HK2	NM_000189	exon15	c.C2200T	p.L734F	CTTTCACTCAACC	.	51	27	49	0	.	252	T	75113781	C	T	75113781	3	4	132	1	0	0	0	0	1	0	0	0	7191	565	20	3	2258	3	HK2	2	75113781	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	3221350	75113781	168085592	16	16762											
STARD7	56910	broad.mit.edu;mdanderson.org	37	2	96874004	96874004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STARD7	NM_020151	exon1	c.C169T	p.L57F	CGAGGAGAACGCG	.	56	11	39	0	.	68	A	96874004	G	A	96874004	3	1	132	1	0	0	0	0	1	0	0	0	15261	942	33	3	975	3	STARD7	2	96874004	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	21760223	96874004	146325369	17	16763											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105885897	105885897	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TGFBRAP1	NM_004257	exon11	c.C2238T	p.T746T	AAATTCGGTGGCG	.	110	40	90	0	.	91	A	105885897	G	A	105885897	2	1	132	1	0	0	0	0	0	0	0	1	15821	1103	39	1		1	TGFBRAP1	2	105885897	Silent	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	9011893	105885897	137313476	18	16764											
RGPD4	285190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108487292	108487292	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RGPD4	NM_182588	exon20	c.T2832C	p.D944D	AAATGATACTGGC	.	1165	178	1081	1	.	2	C	108487292	T	C	108487292	2	2	132	1	0	0	0	0	0	0	0	1	13288	1403	49	2		2	RGPD4	2	108487292	Silent	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	2601395	108487292	134712081	19	16765											
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174231134	174231134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CDCA7	NM_031942	exon8	c.G1159A	p.E387K	GGTGAAGAGGTCA	.	94	28	88	0	.	91	A	174231134	G	A	174231134	3	1	132	1	0	0	0	0	1	0	0	0	3090	943	33	3	1189	3	CDCA7	2	174231134	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	65743842	174231134	68968239	20	16766											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52584506	52584506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PBRM1	NM_018313	exon29	c.T4507C	p.Y1503H	TCAGGTAGGCCTC	.	35	28	49	0	.	575	G	52584506	A	G	52584506	3	3	132	1	0	0	0	0	1	0	0	0	11491	420	15	2	249	2	PBRM1	3	52584506	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10		52584506	145437924	21	16767											
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99643072	99643072	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FILIP1L	NM_182909	exon5	c.605+2T>C	.	AGCCTTACCTTTC	.	192	37	189	0	.	45	G	99643072	A	G	99643072	5	3	132	1	0	0	0	0	0	0	1	0	5895	405	14	2	2833	2	FILIP1L	3	99643072	Splice_Site	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	47058566	99643072	98379358	22	16768											
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133654650	133654650	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLCO2A1	NM_005630	exon13	c.C1782T	p.C594C	GTAGGCGCAGGCC	.	118	33	115	0	.	90	A	133654650	G	A	133654650	2	1	132	1	0	0	0	0	0	0	0	1	14726	1079	38	1		1	SLCO2A1	3	133654650	Silent	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	34011578	133654650	64367780	23	16769											
UBXN7	26043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196089289	196089289	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UBXN7	NM_015562	exon9	c.G1104A	p.E368E	TGGTGGCTCAGTC	.	70	39	80	0	.	71	T	196089289	C	T	196089289	2	4	132	1	0	0	0	0	0	0	0	1	16915	796	28	3		3	UBXN7	3	196089289	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	62434639	196089289	1933141	24	16770											
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3224125	3224125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HTT	NM_002111	exon54	c.C7381T	p.R2461C	ACCAGTCGTACTC	.	64	24	61	1	.	281	T	3224125	C	T	3224125	3	4	132	1	0	0	0	0	1	0	0	0	7457	884	31	1	7595	1	HTT	4	3224125	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		3224125	187930151	25	16771											
MRFAP1	93621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6642727	6642727	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001272053	exon2	c.C138T	p.H46H	CGAGCACGGGCGG	.	118	89	98	0	.	.	T	6642727	C	T	6642727	2	4	132	1	0	0	0	0	0	0	0	1	9761	535	19	1		1	MRFAP1	4	6642727	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	3418602	6642727	184511549	26	16772											
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	17579110	17579110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	LAP3	NM_015907	exon1	c.G22A	p.A8T	CTTCCGGCTGCGG	.	76	13	17	0	.	90	A	17579110	G	A	17579110	3	1	132	1	0	0	0	0	1	0	0	0	8623	1203	42	3	24	3	LAP3	4	17579110	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	10936383	17579110	173575166	27	16773											
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153896719	153896719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FHDC1	NM_033393	exon11	c.G2276A	p.S759N	TGGGTAGCAGCGA	.	78	17	67	0	.	136	A	153896719	G	A	153896719	3	1	132	1	0	0	0	0	1	0	0	0	5876	971	34	3	2318	3	FHDC1	4	153896719	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	136317609	153896719	37257557	28	16774											
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40777637	40777637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PRKAA1	NM_006251	exon2	c.G179A	p.R60Q	TTCTGTCGATTGA	.	271	28	198	0	.	792	T	40777637	C	T	40777637	3	4	132	1	0	0	0	0	1	0	0	0	12493	884	31	1	1581	1	PRKAA1	5	40777637	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		40777637	140137623	29	16775											
CLK4	57396	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178050338	178050338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CLK4	NM_020666	exon2	c.A80G	p.H27R	CGCTTGTGACTTC	.	127	70	108	1	.	359	C	178050338	T	C	178050338	3	2	132	1	0	0	0	0	1	0	0	0	3539	1696	59	2	1413	2	CLK4	5	178050338	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	137272701	178050338	2864922	30	16776											
TTBK1	84630	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43226802	43226802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TTBK1	NM_032538	exon11	c.G1043C	p.G348A	TGCCTGGGGACCT	.	116	11	70	0	.	353	C	43226802	G	C	43226802	3	2	132	1	0	0	0	0	1	0	0	0	16673	1232	43	4	1081	4	TTBK1	6	43226802	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10		43226802	127888265	31	16777											
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43406411	43406411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABCC10	NM_001198934	exon8	c.G2005A	p.A669T	GGCCTGGCCACCC	.	103	19	41	0	.	96	A	43406411	G	A	43406411	3	1	132	1	0	0	0	0	1	0	0	0	50	1203	42	3	1943	3	ABCC10	6	43406411	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	179609	43406411	127708656	32	16778											
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109315748	109315748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SESN1	NM_014454	exon6	c.G1037T	p.R346L	TCATCTCGACATT	.	54	17	85	0	.	227	A	109315748	C	A	109315748	3	1	132	1	0	0	0	0	1	0	0	0	14124	884	31	1	638	1	SESN1	6	109315748	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	65909337	109315748	61799319	33	16779											
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2302995	2302995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SNX8	NM_013321	exon7	c.C785A	p.A262E	CCTATTGCACTGA	.	36	16	41	0	.	290	T	2302995	G	T	2302995	3	4	132	1	0	0	0	0	1	0	0	0	14908	1319	46	3	632	3	SNX8	7	2302995	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10		2302995	156835668	34	16780											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21470288	21470288	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SP4	NM_003112	exon3	c.G1505C	p.S502T	CTTCAAGTGGTGG	.	172	94	143	0	.	95	C	21470288	G	C	21470288	3	2	132	1	0	0	0	0	1	0	0	0	14966	1029	36	4	1515	4	SP4	7	21470288	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	19167293	21470288	137668375	35	16781											
BBS9	27241	broad.mit.edu;bcgsc.ca	37	7	33545255	33545255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	BBS9	NM_198428	exon20	c.2296delT	p.L766fs	CAAGAATTGGTAA	.	30	7	42	0	.	230	-	33545255	T	-	33545255	7	5	132	1	0	1	0	1	0	0	0	0	1342	1490	52	0	2370	0	BBS9	7	33545255	Frame_Shift_Del	DEL	T	TCGA-FV-A3I0-01A-11D-A22F-10	12074967	33545255	125593408	36	16782											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152627	149152627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF777	NM_015694	exon2	c.G487C	p.D163H	GGGTGTCCTTTTG	.	72	31	60	0	.	136	G	149152627	C	G	149152627	3	3	132	1	0	0	0	0	1	0	0	0	18147	855	30	4	2028	4	ZNF777	7	149152627	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	115607372	149152627	9986036	37	16783											
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	68658311	68658311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CPA6	NM_020361	exon1	c.C54A	p.C18X	GAGCCAGCAAAGA	.	75	28	88	0	.	92	T	68658311	G	T	68658311	4	4	132	1	0	0	0	0	0	1	0	0	3794	963	34	3	1303	3	CPA6	8	68658311	Nonsense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10		68658311	77705711	38	16784											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110495324	110495324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PKHD1L1	NM_177531	exon57	c.T9566A	p.V3189E	ATGCTGTGGATTG	.	134	35	102	0	.	145	A	110495324	T	A	110495324	3	1	132	1	0	0	0	0	1	0	0	0	11972	1696	59	4	9792	4	PKHD1L1	8	110495324	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	41837013	110495324	35868698	39	16785											
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124361670	124361670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ATAD2	NM_014109	exon14	c.C1661T	p.T554I	AGCAGGGTGGAAA	.	59	31	51	0	.	92	A	124361670	G	A	124361670	3	1	132	1	0	0	0	0	1	0	0	0	1071	1261	44	3	2571	3	ATAD2	8	124361670	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	13866346	124361670	22002352	40	16786											
DGAT1	8694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145540267	145540267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_012079	exon17	c.G1417A	p.V473I	CGTGGACGTACAT	.	69	40	37	0	.	.	T	145540267	C	T	145540267	3	4	132	1	0	0	0	0	1	0	0	0	4457	536	19	1	53	1	DGAT1	8	145540267	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	21178597	145540267	823755	41	16787											
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	13109010	13109010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MPDZ	NM_003829	exon45	c.A5904T	p.L1968F	GAAGCCTAAGCCA	.	59	31	51	0	.	231	A	13109010	T	A	13109010	3	1	132	1	0	0	0	0	1	0	0	0	9722	1519	53	4	229	4	MPDZ	9	13109010	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10		13109010	128104421	42	16788											
WNK2	65268	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	96051838	96051838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	WNK2	NM_006648	exon19	c.A4802G	p.D1601G	GGGGGGACCTGGC	.	15	7	19	0	.	765	G	96051838	A	G	96051838	3	3	132	1	0	0	0	0	1	0	0	0	17375	275	10	2	4876	2	WNK2	9	96051838	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	82942828	96051838	45161593	43	16789											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107547843	107547843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABCA1	NM_005502	exon49	c.G6479C	p.G2160A	GCAAGTCCAAAGA	.	60	7	84	0	.	1016	G	107547843	C	G	107547843	3	3	132	1	0	0	0	0	1	0	0	0	28	855	30	4	314	4	ABCA1	9	107547843	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	11496005	107547843	33665588	44	16790											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139370175	139370175	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_014866	exon3	c.G1893T	p.V631V	ACCAACCACGTTG	.	45	33	66	0	.	.	A	139370175	C	A	139370175	2	1	132	1	0	0	0	0	0	0	0	1	13986	581	21	3		3	SEC16A	9	139370175	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	31822332	139370175	1843256	45	16791											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37506693	37506693	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ANKRD30A	NM_052997	exon33	c.T2986C	p.L996L	GAAGAATTAGGAA	.	217	46	279	0	.	161	C	37506693	T	C	37506693	2	2	132	1	0	0	0	0	0	0	0	1	658	1490	52	2		2	ANKRD30A	10	37506693	Silent	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10		37506693	98028054	46	16792											
HERC4	26091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69797855	69797855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HERC4	NM_022079	exon5	c.C458G	p.S153C	CCTTTAGAAAGTG	.	125	27	158	0	.	659	C	69797855	G	C	69797855	3	2	132	1	0	0	0	0	1	0	0	0	7060	942	33	4	2803	4	HERC4	10	69797855	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	32291162	69797855	65736892	47	16793											
SGPL1	8879	broad.mit.edu;bcgsc.ca	37	10	72604395	72604395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SGPL1	NM_003901	exon3	c.A193G	p.S65G	CCAGAGAGTAAGT	.	43	5	46	0	.	226	G	72604395	A	G	72604395	3	3	132	1	0	0	0	0	1	0	0	0	14218	318	11	2	199	2	SGPL1	10	72604395	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	2806540	72604395	62930352	48	16794											
C10orf12	26148	broad.mit.edu;bcgsc.ca	37	10	98741247	98741247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	C10orf12	NM_015652	exon1	c.T100C	p.F34L	AATTTGTTCAAAG	.	79	4	126	0	.	92	C	98741247	T	C	98741247	3	2	132	1	0	0	0	0	1	0	0	0	1589	1725	60	2	102	2	C10orf12	10	98741247	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	26136852	98741247	36793500	49	16795											
COX15	1355	ucsc.edu;bcgsc.ca	37	10	101476143	101476143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	COX15	NM_004376	exon8	c.A1063G	p.M355V	CTGCCATCTTGGT	.	31	4	30	0	.	227	C	101476143	T	C	101476143	3	2	132	1	0	0	0	0	1	0	0	0	3764	1435	50	2	247	2	COX15	10	101476143	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	2734896	101476143	34058604	50	16796											
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123325033	123325033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FGFR2	NM_000141	exon3	c.C295T	p.P99S	CTCTAGGCGTGGC	.	78	44	75	0	.	2607	A	123325033	G	A	123325033	3	1	132	1	0	0	0	0	1	0	0	0	5866	1203	42	3	2490	3	FGFR2	10	123325033	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	21848890	123325033	12209714	51	16797											
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123843951	123843951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TACC2	NM_206862	exon4	c.G1936T	p.G646W	ACGGACGGGCCCC	.	30	16	32	0	.	296	T	123843951	G	T	123843951	3	4	132	1	0	0	0	0	1	0	0	0	15499	1116	39	1	1946	1	TACC2	10	123843951	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	518918	123843951	11690796	52	16798											
ADAM8	101	broad.mit.edu;ucsc.edu	37	10	135084292	135084292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ADAM8	NM_001164489	exon15	c.G1582A	p.E528K	AGGACTCCTCGGC	.	77	11	65	1	.	90	T	135084292	C	T	135084292	3	4	132	1	0	0	0	0	1	0	0	0	252	864	30	3	846	3	ADAM8	10	135084292	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	11240341	135084292	450455	53	16799											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1277989	1277989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_002458	exon39	c.G16225A	p.V5409M	ATCTGCGTGCAGG	.	39	10	23	0	.	.	A	1277989	G	A	1277989	3	1	132	1	0	0	0	0	1	0	0	0	9979	1145	40	1	16388	1	MUC5B	11	1277989	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10		1277989	133728527	54	16800											
STIM1	6786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4076832	4076832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STIM1	NM_003156	exon4	c.C462A	p.F154L	GACCTTCCGGAAG	.	123	17	112	0	.	91	A	4076832	C	A	4076832	3	1	132	1	0	0	0	0	1	0	0	0	15282	854	30	3	476	3	STIM1	11	4076832	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	2798843	4076832	130929684	55	16801											
OR51T1	401665	broad.mit.edu;bcgsc.ca	37	11	4904015	4904015	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR51T1	NM_001004759	exon1	c.T967C	p.L323L	TACAGCTTGAAGA	.	142	8	135	0	.	115	C	4904015	T	C	4904015	2	2	132	1	0	0	0	0	0	0	0	1	11106	1606	56	2		2	OR51T1	11	4904015	Silent	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	827183	4904015	130102501	56	16802											
APBB1	322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6422643	6422643	+	Missense_Mutation	SNP	C	C	G	rs142613637		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	APBB1	NM_001164	exon10	c.G1520C	p.R507P	GCATTACGCCGTT	.	38	16	48	0	C|1.000;G|0.000	136	G	6422643	C	G	6422643	3	3	132	1	0	0	0	0	1	0	0	0	759	536	19	4	632	4	APBB1	11	6422643	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	1518628	6422643	128583873	57	16803											
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6942827	6942827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR2D3	NM_001004684	exon1	c.G595T	p.A199S	CCTCCTGCCCTCC	.	264	135	249	0	.	68	T	6942827	G	T	6942827	3	4	132	1	0	0	0	0	1	0	0	0	10995	1319	46	3	597	3	OR2D3	11	6942827	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	520184	6942827	128063689	58	16804											
SAAL1	113174	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18127543	18127543	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SAAL1	NM_138421	exon1	c.G46C	p.E16Q	CCTCCTCCTCCTT	.	19	6	17	0	.	90	G	18127543	C	G	18127543	3	3	132	1	0	0	0	0	1	0	0	0	13801	864	30	4	1426	4	SAAL1	11	18127543	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	11184716	18127543	116878973	59	16805											
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18333521	18333521	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HPS5	NM_181507	exon3	c.A159G	p.G53G	TCCTCCTCCTGAA	.	59	12	57	0	.	133	C	18333521	T	C	18333521	2	2	132	1	0	0	0	0	0	0	0	1	7342	1538	54	2		2	HPS5	11	18333521	Silent	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	205978	18333521	116672995	60	16806											
SLC17A6	57084	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22399124	22399124	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC17A6	NM_020346	exon12	c.G1587T	p.G529G	AACAGGGGACATT	.	128	36	145	1	.	580	T	22399124	G	T	22399124	2	4	132	1	0	0	0	0	0	0	0	1	14421	1219	43	3		3	SLC17A6	11	22399124	Silent	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	4065603	22399124	112607392	61	16807											
SLC35C1	55343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45832329	45832329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC35C1	NM_018389	exon2	c.G538A	p.G180S	GCAGGGGGCTTCT	.	54	17	30	0	.	90	A	45832329	G	A	45832329	3	1	132	1	0	0	0	0	1	0	0	0	14579	1232	43	3	544	3	SLC35C1	11	45832329	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	23433205	45832329	89174187	62	16808											
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67925241	67925241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SUV420H1	NM_017635	exon11	c.T2572G	p.L858V	ACCTCAAGCGCTT	.	178	101	135	0	.	228	C	67925241	A	C	67925241	3	2	132	1	0	0	0	0	1	0	0	0	15411	69	3	5	89	5	SUV420H1	11	67925241	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	22092912	67925241	67081275	63	16809											
CMAS	55907	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	22199469	22199479	+	Frame_Shift_Del	DEL	GCGGCCCTGGA	GCGGCCCTGGA	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	GCGGCCCTGGA	GCGGCCCTGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CMAS	NM_018686	exon1	c.232_242del	p.78_81del	CTGCGTGCGGCCC	.	83	39	24	0	.	93	-	22199479	GCGGCCCTGGA	-	22199469	7	5	132	1	0	1	0	1	0	0	0	0	3575	1319	46	0	234	0	CMAS	12	22199469	Frame_Shift_Del	DEL	GCGGCCCTGGA	TCGA-FV-A3I0-01A-11D-A22F-10		22199469	111652426	64	16810											
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53607025	53607025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RARG	NM_000966	exon9	c.C1021T	p.R341C	CCATGCGGTCTAT	.	67	35	36	0	.	722	A	53607025	G	A	53607025	3	1	132	1	0	0	0	0	1	0	0	0	13054	1116	39	1	351	1	RARG	12	53607025	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	31407556	53607025	80244870	65	16811											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	101736252	101736253	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UTP20	NM_014503	exon33	c.4130_4131insAC	p.V1377fs	TGACAGTACAAAA	.	110	51	81	0	.	155	AC	101736253	-	AC	101736252	7	5	132	1	0	1	1	0	0	0	0	0	17096	1638	57	0	4260	0	UTP20	12	101736252	Frame_Shift_Ins	INS	-	TCGA-FV-A3I0-01A-11D-A22F-10	48129227	101736252	32115643	66	16812											
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130827612	130827612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PIWIL1	NM_004764	exon3	c.G156C	p.Q52H	ACGGCAGAGAGGA	.	218	35	167	0	.	92	C	130827612	G	C	130827612	3	2	132	1	0	0	0	0	1	0	0	0	11957	933	33	4	162	4	PIWIL1	12	130827612	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	29091360	130827612	3024283	67	16813											
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56079097	56079097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KTN1	NM_004986	exon2	c.G331T	p.V111F	AGTAGTGTTAGGG	.	157	49	119	0	.	1147	T	56079097	G	T	56079097	3	4	132	1	0	0	0	0	1	0	0	0	8585	1377	48	3	333	3	KTN1	14	56079097	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10		56079097	51270443	68	16814											
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93118817	93118817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RIN3	NM_024832	exon6	c.C1423T	p.P475S	ACCCTCCCAGCTC	.	28	23	57	0	.	522	T	93118817	C	T	93118817	3	4	132	1	0	0	0	0	1	0	0	0	13373	623	22	3	1445	3	RIN3	14	93118817	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	37039720	93118817	14230723	69	16815											
DYNC1H1	1778	broad.mit.edu;mdanderson.org	37	14	102510668	102510668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DYNC1H1	NM_001376	exon71	c.G12742T	p.A4248S	TTAATGGCCCAGT	.	24	3	49	0	.	98	T	102510668	G	T	102510668	3	4	132	1	0	0	0	0	1	0	0	0	4841	1203	42	3	13024	3	DYNC1H1	14	102510668	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	9391851	102510668	4838872	70	16816											
OR4N4	283694	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22382912	22382912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR4N4	NM_001005241	exon1	c.C440T	p.A147V	TGTTGGCTCTGTG	.	393	26	352	1	.	73	T	22382912	C	T	22382912	3	4	132	1	0	0	0	0	1	0	0	0	11078	797	28	3	442	3	OR4N4	15	22382912	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		22382912	80148480	71	16817											
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	64698610	64698610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TRIP4	NM_016213	exon6	c.A779G	p.E260G	GTCTGGAGAAGGC	.	113	24	98	0	.	188	G	64698610	A	G	64698610	3	3	132	1	0	0	0	0	1	0	0	0	16555	304	11	2	801	2	TRIP4	15	64698610	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	42315698	64698610	37832782	72	16818											
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3613089	3613089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NLRC3	NM_178844	exon5	c.G1849A	p.E617K	TGGCCTCCTGGGC	.	58	40	21	0	.	96	T	3613089	C	T	3613089	3	4	132	1	0	0	0	0	1	0	0	0	10468	864	30	3	1413	3	NLRC3	16	3613089	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		3613089	86741664	73	16819											
STX4	6810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31045531	31045531	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STX4	NM_001272096	exon4	c.C111T	p.L37L	CCCTCTCGGTCAC	.	60	32	75	0	.	90	T	31045531	C	T	31045531	2	4	132	1	0	0	0	0	0	0	0	1	15346	899	31	1		1	STX4	16	31045531	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	27432442	31045531	59309222	74	16820											
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48595690	48595690	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	N4BP1	NM_153029	exon2	c.T864A	p.S288S	AGAATCAGAAAAT	.	67	44	98	0	.	22	T	48595690	A	T	48595690	2	4	132	1	0	0	0	0	0	0	0	1	10109	175	7	4		4	N4BP1	16	48595690	Silent	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	17550159	48595690	41759063	75	16821											
MT1F	4494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56692645	56692645	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MT1F	NM_005949	exon2	c.C87T	p.C29C	CTCCTGCAAGAAG	.	42	25	54	0	.	44	T	56692645	C	T	56692645	2	4	132	1	0	0	0	0	0	0	0	1	9900	718	25	3		3	MT1F	16	56692645	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	8096955	56692645	33662108	76	16822											
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7755291	7755291	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KDM6B	NM_001080424	exon18	c.C4188T	p.F1396F	CAACTTCTGCTCC	.	89	14	79	0	.	205	T	7755291	C	T	7755291	2	4	132	1	0	0	0	0	0	0	0	1	8138	912	32	3		3	KDM6B	17	7755291	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		7755291	73439919	77	16823											
ALOX12B	242	broad.mit.edu;bcgsc.ca	37	17	7980386	7980386	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ALOX12B	NM_001139	exon9	c.G1197A	p.L399L	CTCCAGCAGGTGG	.	60	4	53	0	.	226	T	7980386	C	T	7980386	2	4	132	1	0	0	0	0	0	0	0	1	537	697	25	3		3	ALOX12B	17	7980386	Silent	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	225095	7980386	73214824	78	16824											
LIG3	3980	broad.mit.edu;ucsc.edu	37	17	33318795	33318795	+	Missense_Mutation	SNP	C	C	T	rs201706144		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	LIG3	NM_013975	exon6	c.C1147T	p.R383W	CTTCTGCGGCTGT	.	39	4	53	1	.	728	T	33318795	C	T	33318795	3	4	132	1	0	0	0	0	1	0	0	0	8782	759	27	1	1165	1	LIG3	17	33318795	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	25338409	33318795	47876415	79	16825											
HOXB3	3213	ucsc.edu;bcgsc.ca	37	17	46628059	46628059	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HOXB3	NM_002146	exon4	c.T933C	p.P311P	TTTGAGAGGGGGC	.	24	4	24	0	.	514	G	46628059	A	G	46628059	2	3	132	1	0	0	0	0	0	0	0	1	7302	291	11	2		2	HOXB3	17	46628059	Silent	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	13309264	46628059	34567151	80	16826											
ZNF121	7675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9677428	9677428	+	Missense_Mutation	SNP	A	A	G	rs144655023		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF121	NM_001008727	exon4	c.T361C	p.C121R	TCCCACATTGCTT	.	162	93	148	0	A|1.000;G|0.000	91	G	9677428	A	G	9677428	3	3	132	1	0	0	0	0	1	0	0	0	17716	217	8	2	815	2	ZNF121	19	9677428	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10		9677428	49451555	81	16827											
KCNN1	3780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18092829	18092829	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KCNN1	NM_002248	exon5	c.G810A	p.T270T	CAACACGCGCTTC	.	100	17	35	0	.	22	A	18092829	G	A	18092829	2	1	132	1	0	0	0	0	0	0	0	1	8078	1074	38	1		1	KCNN1	19	18092829	Silent	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	8415401	18092829	41036154	82	16828											
MED25	81857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50331706	50331706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MED25	NM_030973	exon4	c.G306T	p.K102N	CTGCAGGTTCATG	.	86	46	63	0	.	91	T	50331706	G	T	50331706	3	4	132	1	0	0	0	0	1	0	0	0	9443	1275	44	3	320	3	MED25	19	50331706	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	32238877	50331706	8797277	83	16829											
ZNF841	284371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52570784	52570784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001136499	exon7	c.G351T	p.M117I	TTCCAACATCACT	.	273	40	235	0	.	.	A	52570784	C	A	52570784	3	1	132	1	0	0	0	0	1	0	0	0	18186	478	17	3	2427	3	ZNF841	19	52570784	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10	2239078	52570784	6558199	84	16830											
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014990	53014990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001099694	exon6	c.G1356T	p.E452D	TGGAGAGAAATCT	.	128	41	89	0	.	.	T	53014990	G	T	53014990	3	4	132	1	0	0	0	0	1	0	0	0	18007	933	33	3	1366	3	ZNF578	19	53014990	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	444206	53014990	6113993	85	16831											
UBE2S	27338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55918294	55918294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UBE2S	NM_014501	exon2	c.C40T	p.R14C	CCAGGCGGATGAT	.	86	16	76	0	.	226	A	55918294	G	A	55918294	3	1	132	1	0	0	0	0	1	0	0	0	16869	1116	39	1	640	1	UBE2S	19	55918294	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	2903304	55918294	3210689	86	16832											
ZIM3	114026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57646911	57646911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZIM3	NM_052882	exon5	c.C794G	p.S265C	ATGCAGGATGATT	.	224	31	181	1	.	92	C	57646911	G	C	57646911	3	2	132	1	0	0	0	0	1	0	0	0	17682	1174	41	4	628	4	ZIM3	19	57646911	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	1728617	57646911	1482072	87	16833											
ZSCAN4	201516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58187569	58187569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZSCAN4	NM_152677	exon3	c.G56A	p.G19E	ATCTTGGATCAGA	.	158	88	109	0	.	91	A	58187569	G	A	58187569	3	1	132	1	0	0	0	0	1	0	0	0	18234	1174	41	3	58	3	ZSCAN4	19	58187569	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	540658	58187569	941414	88	16834											
ZNF551	90233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58199625	58199625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF551	NM_138347	exon3	c.A1982G	p.H661R	TTCGACATCGGAG	.	71	14	50	0	.	91	G	58199625	A	G	58199625	3	3	132	1	0	0	0	0	1	0	0	0	17980	217	8	2	1944	2	ZNF551	19	58199625	Missense_Mutation	SNP	A	TCGA-FV-A3I0-01A-11D-A22F-10	12056	58199625	929358	89	16835											
PSMF1	9491	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1106148	1106148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PSMF1	NM_006814	exon2	c.C137T	p.P46L	CGGGTCCCAATGA	.	90	34	85	1	.	90	T	1106148	C	T	1106148	3	4	132	1	0	0	0	0	1	0	0	0	12710	623	22	3	143	3	PSMF1	20	1106148	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		1106148	61919372	90	16836											
TGM3	7053	broad.mit.edu;bcgsc.ca	37	20	2315852	2315852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TGM3	NM_003245	exon11	c.T1733C	p.V578A	GCAAGGTCCCAGA	.	114	5	97	0	.	139	C	2315852	T	C	2315852	3	2	132	1	0	0	0	0	1	0	0	0	15828	1667	58	2	1775	2	TGM3	20	2315852	Missense_Mutation	SNP	T	TCGA-FV-A3I0-01A-11D-A22F-10	1209704	2315852	60709668	91	16837											
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15858388	15858388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SAMSN1	NM_001256370	exon9	c.G1171T	p.D391Y	AGATGTCTGAGCT	.	149	37	137	0	.	94	A	15858388	C	A	15858388	3	1	132	1	0	0	0	0	1	0	0	0	13830	913	32	3	158	3	SAMSN1	21	15858388	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		15858388	32271507	92	16838											
IGSF5	150084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41137531	41137531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	IGSF5	NM_001080444	exon3	c.G170T	p.R57L	AGGCTCGCTTCAA	.	62	23	49	0	.	68	T	41137531	G	T	41137531	3	4	132	1	0	0	0	0	1	0	0	0	7602	1087	38	1	180	1	IGSF5	21	41137531	Missense_Mutation	SNP	G	TCGA-FV-A3I0-01A-11D-A22F-10	25279143	41137531	6992364	93	16839											
DCAF8L2	347442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	27765469	27765469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DCAF8L2	NM_001136533	exon1	c.C457T	p.P153S	GCGGGTCCACAAG	.	68	60	86	0	.	42	T	27765469	C	T	27765469	3	4	132	1	0	0	0	0	1	0	0	0	4278	855	30	3	459	3	DCAF8L2	23	27765469	Missense_Mutation	SNP	C	TCGA-FV-A3I0-01A-11D-A22F-10		27765469	127505091	94	16840											
GPR157	80045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	9188904	9188904	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR157	NM_024980	exon1	c.C183T	p.A61A	GGAGGCGGCCGAG	.	43	17	28	0	.	514	A	9188904	G	A	9188904	2	1	133	1	0	0	0	0	0	0	0	1	6662	1103	39	1		1	GPR157	1	9188904	Silent	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		9188904	240061717	1	16841											
MRPS15	64960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36923570	36923570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRPS15	NM_031280	exon6	c.C398G	p.S133C	TTGACAGACAAGG	.	121	35	104	0	.	91	C	36923570	G	C	36923570	3	2	133	1	0	0	0	0	1	0	0	0	9825	942	33	4	387	4	MRPS15	1	36923570	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	27734666	36923570	212327051	2	16842											
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47609480	47609481	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CYP4A22	NM_001010969	exon6	c.682_683insT	p.V228fs	AGCCTGGTTTTTT	.	156	47	189	0	.	139	T	47609481	-	T	47609480	7	5	133	1	0	1	1	0	0	0	0	0	4184	1261	44	0	704	0	CYP4A22	1	47609480	Frame_Shift_Ins	INS	-	TCGA-FV-A3I1-01A-11D-A22F-10	10685910	47609480	201641141	3	16843											
ITGB3BP	23421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63974243	63974243	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ITGB3BP	NM_014288	exon3	c.6-2A>G	.	TAACACTACAAAC	.	311	99	256	0	.	90	C	63974243	T	C	63974243	5	2	133	1	0	0	0	0	0	0	1	0	7896	1536	53	2	557	2	ITGB3BP	1	63974243	Splice_Site	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	16364763	63974243	185276378	4	16844											
DEPDC1	55635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	68944871	68944874	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DEPDC1	NM_001114120	exon10	c.2065_2068del	p.689_690del	CAGTCTGTAAGTA	.	173	51	209	0	.	90	-	68944874	GTAA	-	68944871	7	5	133	1	0	1	0	1	0	0	0	0	4439	1386	48	0	379	0	DEPDC1	1	68944871	Frame_Shift_Del	DEL	GTAA	TCGA-FV-A3I1-01A-11D-A22F-10	4970628	68944871	180305750	5	16845											
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	98164998	98164998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DPYD	NM_000110	exon6	c.C589T	p.P197S	TTGCAGGCCCAGC	.	162	51	145	0	.	278	A	98164998	G	A	98164998	3	1	133	1	0	0	0	0	1	0	0	0	4745	1203	42	3	2560	3	DPYD	1	98164998	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	29220127	98164998	151085623	6	16846											
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99771771	99771771	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LPPR4	NM_014839	exon7	c.T1497C	p.N499N	TGGCAATCAGTAC	.	96	38	93	0	.	93	C	99771771	T	C	99771771	2	2	133	1	0	0	0	0	0	0	0	1	8927	1432	50	2		2	LPPR4	1	99771771	Silent	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	1606773	99771771	149478850	7	16847											
HAPLN2	60484	broad.mit.edu;mdanderson.org	37	1	156594411	156594411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HAPLN2	NM_021817	exon6	c.A575G	p.D192G	GTCTGGACTGGTG	.	55	8	29	0	.	90	G	156594411	A	G	156594411	3	3	133	1	0	0	0	0	1	0	0	0	6955	275	10	2	589	2	HAPLN2	1	156594411	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	56822640	156594411	92656210	8	16848											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180062616	180062617	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CEP350	NM_014810	exon34	c.7376_7377insT	p.K2459fs	AACTCAAGTCCCC	.	325	154	252	0	.	26	T	180062617	-	T	180062616	7	5	133	1	0	1	1	0	0	0	0	0	3254	72	3	0	7506	0	CEP350	1	180062616	Frame_Shift_Ins	INS	-	TCGA-FV-A3I1-01A-11D-A22F-10	23468205	180062616	69188005	9	16849											
LAD1	3898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201351823	201351823	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LAD1	NM_005558	exon8	c.G1431A	p.L477L	GATCCACAGGTTG	.	53	16	55	0	.	90	T	201351823	C	T	201351823	2	4	133	1	0	0	0	0	0	0	0	1	8599	465	17	3		3	LAD1	1	201351823	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	21289207	201351823	47898798	10	16850											
ODC1	4953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10581663	10581663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ODC1	NM_002539	exon11	c.A1213G	p.I405V	AGTAGATCGTCGG	.	140	98	118	0	.	69	C	10581663	T	C	10581663	3	2	133	1	0	0	0	0	1	0	0	0	10825	1435	50	2	180	2	ODC1	2	10581663	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10		10581663	232617710	11	16851											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814010	137814010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	THSD7B	.	.	.	.	TGTACAGGAGACT	.	49	30	78	0	.	75	C	137814010	G	C	137814010	3	2	133	1	0	0	0	0	1	0	0	0	15877	1001	35	4	73	4	THSD7B	2	137814010	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	127232347	137814010	105385363	12	16852											
NFE2L2	4780	hgsc.bcm.edu;bcgsc.ca	37	2	178098960	178098974	+	In_Frame_Del	DEL	CTATATCTTGCCTCC	CTATATCTTGCCTCC	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CTATATCTTGCCTCC	CTATATCTTGCCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NFE2L2	NM_006164	exon2	c.71_85del	p.24_29del	CAAGATCTATATC	.	185	125	128	0	.	90	-	178098974	CTATATCTTGCCTCC	-	178098960	7	5	133	1	0	1	0	1	0	0	0	0	10368	913	32	0	1748	0	NFE2L2	2	178098960	In_Frame_Del	DEL	CTATATCTTGCCTCC	TCGA-FV-A3I1-01A-11D-A22F-10	40284950	178098960	65100413	13	16853											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47098921	47098921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SETD2	NM_014159	exon15	c.C6353T	p.T2118I	TCCTCTGTAGAAA	.	96	24	98	0	.	1273	A	47098921	G	A	47098921	3	1	133	1	0	0	0	0	1	0	0	0	14131	1377	48	3	1369	3	SETD2	3	47098921	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		47098921	150923509	14	16854											
DNAH12	201625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57454649	57454649	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DNAH12	NM_178504	exon17	c.A2163G	p.E721E	AAACTCTTCCACA	.	131	50	114	1	.	47	C	57454649	T	C	57454649	2	2	133	1	0	0	0	0	0	0	0	1	4600	1606	56	2		2	DNAH12	3	57454649	Silent	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	10355728	57454649	140567781	15	16855											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78685014	78685014	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ROBO1	NM_002941	exon23	c.T3282C	p.S1094S	CTCGCCAGAGTCC	.	178	60	178	0	.	67	G	78685014	A	G	78685014	2	3	133	1	0	0	0	0	0	0	0	1	13513	175	7	2		2	ROBO1	3	78685014	Silent	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	21230365	78685014	119337416	16	16856											
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97868346	97868346	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OR5H14	NM_001005514	exon1	c.C117A	p.I39I	CACCATCATGGGG	.	565	189	555	0	.	91	A	97868346	C	A	97868346	2	1	133	1	0	0	0	0	0	0	0	1	11160	816	29	3		3	OR5H14	3	97868346	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	19183332	97868346	100154084	17	16857											
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107510138	107510138	+	Missense_Mutation	SNP	C	C	T	rs138504832	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	BBX	NM_001142568	exon15	c.C2345T	p.P782L	TTCACCCTACAGA	.	230	53	215	0	C|1.000;A|0.000	94	T	107510138	C	T	107510138	3	4	133	1	0	0	0	0	1	0	0	0	1343	681	24	3	2391	3	BBX	3	107510138	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	9641792	107510138	90512292	18	16858											
GPR87	53836	hgsc.bcm.edu;broad.mit.edu	37	3	151017871	151017871	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR87	NM_023915	exon2	c.G18T	p.T6T	TGCAAGCGTCAAG	.	84	4	84	0	.	153	A	151017871	C	A	151017871	2	1	133	1	0	0	0	0	0	0	0	1	6716	755	27	1		1	GPR87	3	151017871	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	43507733	151017871	47004559	19	16859											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998534	173998534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NLGN1	NM_014932	exon7	c.C1913A	p.P638H	TCAGACCTACGAG	.	148	40	166	0	.	231	A	173998534	C	A	173998534	3	1	133	1	0	0	0	0	1	0	0	0	10461	681	24	3	1931	3	NLGN1	3	173998534	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	22980663	173998534	24023896	20	16860											
PPEF2	5470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76794280	76794280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PPEF2	NM_006239	exon12	c.G1506T	p.K502N	ACCCACCTTGCGG	.	92	21	76	0	.	228	A	76794280	C	A	76794280	3	1	133	1	0	0	0	0	1	0	0	0	12308	695	24	3	779	3	PPEF2	4	76794280	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10		76794280	114359996	21	16861											
OCLN	100506658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68805338	68805338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OCLN	NM_001205254	exon3	c.A421T	p.M141L	GGCTTCATGTTGG	.	318	111	289	0	.	68	T	68805338	A	T	68805338	3	4	133	1	0	0	0	0	1	0	0	0	10820	217	8	4	427	4	OCLN	5	68805338	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10		68805338	112109922	22	16862											
EDIL3	10085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	83680126	83680126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EDIL3	NM_005711	exon1	c.G67A	p.G23S	CCTTACCTTTGCC	.	46	15	36	0	.	131	T	83680126	C	T	83680126	3	4	133	1	0	0	0	0	1	0	0	0	4915	695	24	3	1419	3	EDIL3	5	83680126	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	14874788	83680126	97235134	23	16863											
WDR36	134430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110456277	110456277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	WDR36	NM_139281	exon18	c.C2156A	p.T719N	CTGGTACTTGTCA	.	104	26	92	0	.	92	A	110456277	C	A	110456277	3	1	133	1	0	0	0	0	1	0	0	0	17287	565	20	3	2226	3	WDR36	5	110456277	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	26776151	110456277	70458983	24	16864											
MYOT	9499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137219116	137219116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MYOT	NM_006790	exon7	c.G860T	p.G287V	TAAATGGAAGAAC	.	185	55	169	0	.	153	T	137219116	G	T	137219116	3	4	133	1	0	0	0	0	1	0	0	0	10094	1174	41	3	882	3	MYOT	5	137219116	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	26762839	137219116	43696144	25	16865											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139889380	139889380	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon21	c.T3924C	p.C1308C	ATTTTGTGAACTC	.	165	56	104	0	.	185	C	139889380	T	C	139889380	2	2	133	1	0	0	0	0	0	0	0	1	628	1702	59	2		2	ANKHD1	5	139889380	Silent	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	2670264	139889380	41025880	26	16866											
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139917173	139917173	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon31	c.A7227T	p.S2409S	TGTGTCAGGTACA	.	130	37	121	1	.	185	T	139917173	A	T	139917173	2	4	133	1	0	0	0	0	0	0	0	1	628	202	7	4		4	ANKHD1	5	139917173	Silent	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	27793	139917173	40998087	27	16867											
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140235699	140235699	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PCDHA10	NM_031859	exon1	c.C66T	p.A22A	CGCAGCCTGGGAG	.	76	52	64	0	.	99	T	140235699	C	T	140235699	2	4	133	1	0	0	0	0	0	0	0	1	11520	668	24	3		3	PCDHA10	5	140235699	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	318526	140235699	40679561	28	16868											
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178310382	178310382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF354B	NM_058230	exon5	c.G929C	p.R310T	GTCGAAGGTCTGG	.	203	63	201	0	.	92	C	178310382	G	C	178310382	3	2	133	1	0	0	0	0	1	0	0	0	17862	1000	35	4	943	4	ZNF354B	5	178310382	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	38074683	178310382	2604878	29	16869											
TFAP2A	7020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10398750	10398750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TFAP2A	NM_003220	exon7	c.C1214A	p.A405D	TTGAGGGCCTCGG	.	151	60	150	0	.	91	T	10398750	G	T	10398750	3	4	133	1	0	0	0	0	1	0	0	0	15784	1203	42	3	103	3	TFAP2A	6	10398750	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		10398750	160716317	30	16870											
ZBTB9	221504	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	33424110	33424110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZBTB9	NM_152735	exon2	c.T1233A	p.F411L	GCCTTTTGGCTGT	.	44	8	44	0	.	90	A	33424110	T	A	33424110	3	1	133	1	0	0	0	0	1	0	0	0	17555	1809	63	4	1235	4	ZBTB9	6	33424110	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	23025360	33424110	137690957	31	16871											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66044982	66044982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EYS	NM_001142801	exon11	c.C1657A	p.L553I	AACATAGATACCG	.	143	53	140	0	.	660	T	66044982	G	T	66044982	3	4	133	1	0	0	0	0	1	0	0	0	5332	933	33	3	7871	3	EYS	6	66044982	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	32620872	66044982	105070085	32	16872											
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119345814	119345814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM184A	NM_024581	exon2	c.T324G	p.I108M	AACTTGAATCTTT	.	231	73	206	0	.	519	C	119345814	A	C	119345814	3	2	133	1	0	0	0	0	1	0	0	0	5511	242	9	5	3166	5	FAM184A	6	119345814	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	53300832	119345814	51769253	33	16873											
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	161470524	161470524	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAP3K4	NM_006724	exon3	c.T1220G	p.L407X	AGAAATTAAGGAT	.	171	64	164	0	.	548	G	161470524	T	G	161470524	4	3	133	1	0	0	0	0	0	1	0	0	9252	1764	61	5	1230	5	MAP3K4	6	161470524	Nonsense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	42124710	161470524	9644543	34	16874											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24758722	24758722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DFNA5	NM_001127453	exon4	c.A520G	p.M174V	CCTGCATGTGCTC	.	27	15	51	0	.	91	C	24758722	T	C	24758722	3	2	133	1	0	0	0	0	1	0	0	0	4454	1464	51	2	998	2	DFNA5	7	24758722	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10		24758722	134379941	35	16875											
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138764382	138764382	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZC3HAV1	NM_024625	exon4	c.G1305T	p.V435V	TGTGGCCACTCCA	.	240	112	188	0	.	91	A	138764382	C	A	138764382	2	1	133	1	0	0	0	0	0	0	0	1	17572	581	21	3		3	ZC3HAV1	7	138764382	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	114005660	138764382	20374281	36	16876											
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143095957	143095957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.C1073A	p.T358K	CCCCCCGTATCTG	.	47	23	32	0	.	1436	T	143095957	G	T	143095957	3	4	133	1	0	0	0	0	1	0	0	0	5165	1145	40	1	1909	1	EPHA1	7	143095957	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	4331575	143095957	16042706	37	16877	90	2									
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143095959	143095959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.T1071A	p.D357E	CCCCGTATCTGCT	.	46	22	32	0	.	1436	T	143095959	A	T	143095959	3	4	133	1	0	0	0	0	1	0	0	0	5165	446	16	4	1911	4	EPHA1	7	143095959	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	2	143095959	16042704	38	16878	90	2									
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55539906	55539906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RP1	NM_006269	exon4	c.A3464G	p.N1155S	CTACCAACAAATC	.	244	58	196	0	.	102	G	55539906	A	G	55539906	3	3	133	1	0	0	0	0	1	0	0	0	13532	43	2	2	3474	2	RP1	8	55539906	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10		55539906	90824116	39	16879											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99045370	99045370	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MATN2	NM_002380	exon17	c.T2682C	p.S894S	ACGGTCTACACAA	.	190	52	141	0	.	24	C	99045370	T	C	99045370	2	2	133	1	0	0	0	0	0	0	0	1	9334	1509	53	2		2	MATN2	8	99045370	Silent	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	43505464	99045370	47318652	40	16880											
EXOSC3	51010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37784995	37784995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EXOSC3	NM_016042	exon1	c.G47A	p.R16K	CGCGCCCTGCTGC	.	42	18	63	1	.	135	T	37784995	C	T	37784995	3	4	133	1	0	0	0	0	1	0	0	0	5316	681	24	3	796	3	EXOSC3	9	37784995	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10		37784995	103428436	41	16881											
C9orf64	84267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86571114	86571114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	C9orf64	NM_032307	exon1	c.C302T	p.S101F	CACAGGGACCAGT	.	25	10	27	0	.	90	A	86571114	G	A	86571114	3	1	133	1	0	0	0	0	1	0	0	0	2489	1174	41	3	739	3	C9orf64	9	86571114	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	48786119	86571114	54642317	42	16882											
PHF2	5253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96415567	96415567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PHF2	NM_005392	exon6	c.T709G	p.C237G	AAGTACTGCCTAA	.	22	9	32	0	.	91	G	96415567	T	G	96415567	3	3	133	1	0	0	0	0	1	0	0	0	11830	1580	55	5	731	5	PHF2	9	96415567	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	9844453	96415567	44797864	43	16883											
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128001549	128001549	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HSPA5	NM_005347	exon5	c.T667G	p.F223V	GGTCAAACACCAG	.	90	48	101	1	.	230	C	128001549	A	C	128001549	3	2	133	1	0	0	0	0	1	0	0	0	7414	43	2	5	1313	5	HSPA5	9	128001549	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	31585982	128001549	13211882	44	16884											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26414368	26414368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MYO3A	NM_017433	exon19	c.G1945T	p.A649S	CAAGAAGCTCTCA	.	127	34	165	0	.	1007	T	26414368	G	T	26414368	3	4	133	1	0	0	0	0	1	0	0	0	10076	971	34	3	2011	3	MYO3A	10	26414368	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		26414368	109120379	45	16885											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85971460	85971460	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CDHR1	NM_001171971	exon14	c.T1542A	p.T514T	TGGGACTGGGGCA	.	88	24	83	0	.	91	A	85971460	T	A	85971460	2	1	133	1	0	0	0	0	0	0	0	1	3118	1567	55	4		4	CDHR1	10	85971460	Silent	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	59557092	85971460	49563287	46	16886											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91522476	91522476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KIF20B	NM_016195	exon29	c.A4753G	p.I1585V	TTAGAGATTCAAT	.	64	15	73	0	.	93	G	91522476	A	G	91522476	3	3	133	1	0	0	0	0	1	0	0	0	8287	333	12	2	4863	2	KIF20B	10	91522476	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	5551016	91522476	44012271	47	16887											
LDB1	8861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103870721	103870721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LDB1	NM_001113407	exon5	c.A257G	p.D86G	AGATTGTCACACT	.	91	39	95	0	.	289	C	103870721	T	C	103870721	3	2	133	1	0	0	0	0	1	0	0	0	8695	1667	58	2	1006	2	LDB1	10	103870721	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	12348245	103870721	31664026	48	16888											
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3249346	3249346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRGPRE	NM_001039165	exon2	c.C684A	p.F228L	GCCGCAGAAGAGG	.	32	13	38	0	.	136	T	3249346	G	T	3249346	3	4	133	1	0	0	0	0	1	0	0	0	9764	933	33	3	258	3	MRGPRE	11	3249346	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		3249346	131757170	49	16889											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63059095	63059095	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SLC22A10	NM_001039752	exon2	c.A486T	p.I162I	CATCATAGGTGGC	.	115	33	110	0	.	92	T	63059095	A	T	63059095	2	4	133	1	0	0	0	0	0	0	0	1	14441	410	15	4		4	SLC22A10	11	63059095	Silent	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	59809749	63059095	71947421	50	16890											
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65482196	65482196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KAT5	NM_182710	exon7	c.G921T	p.K307N	TCTCAAGTGTCTT	.	162	53	162	0	.	90	T	65482196	G	T	65482196	3	4	133	1	0	0	0	0	1	0	0	0	7983	1020	36	3	947	3	KAT5	11	65482196	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	2423101	65482196	69524320	51	16891											
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73431941	73431941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RAB6A	NM_002869	exon3	c.A133G	p.T45A	CAATTGTTGCCTG	.	118	31	113	0	.	227	C	73431941	T	C	73431941	3	2	133	1	0	0	0	0	1	0	0	0	12951	1725	60	2	627	2	RAB6A	11	73431941	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	7949745	73431941	61574575	52	16892											
SORL1	6653	broad.mit.edu;bcgsc.ca	37	11	121440944	121440944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SORL1	NM_003105	exon23	c.A3302G	p.N1101S	TTGACAACGACTG	.	88	6	74	0	.	228	G	121440944	A	G	121440944	3	3	133	1	0	0	0	0	1	0	0	0	14934	43	2	2	3392	2	SORL1	11	121440944	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10	48009003	121440944	13565572	53	16893											
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6443355	6443355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TNFRSF1A	NM_001065	exon2	c.C95A	p.P32H	AGGTGAGGGACCA	.	116	43	117	0	.	659	T	6443355	G	T	6443355	3	4	133	1	0	0	0	0	1	0	0	0	16290	1000	35	3	1308	3	TNFRSF1A	12	6443355	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		6443355	127408540	54	16894											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49427419	49427420	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	p.G3690I	AGGGATCCAGCCC	.	52	14	58	0	.	.	AT	49427420	CC	AT	49427419	3	1	133	1	0	0	0	0	1	0	0	0	9621	855	30	3	5608	3	MLL2	12	49427419	Missense_Mutation	DNP	CC	TCGA-FV-A3I1-01A-11D-A22F-10	42984064	49427419	84424476	55	16895											
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99060130	99060130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APAF1	NM_181868	exon9	c.C1357A	p.L453I	AGCCAGCTTCAGG	.	183	61	161	1	.	229	A	99060130	C	A	99060130	3	1	133	1	0	0	0	0	1	0	0	0	755	797	28	3	1387	3	APAF1	12	99060130	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	49632711	99060130	34791765	56	16896											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117723945	117723945	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOS1	NM_000620	exon6	c.G1254A	p.S418S	ACAGCGCGAGGCA	.	122	32	157	0	.	154	T	117723945	C	T	117723945	2	4	133	1	0	0	0	0	0	0	0	1	10541	755	27	1		1	NOS1	12	117723945	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	18663815	117723945	16127950	57	16897											
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124414218	124414218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DNAH10	NM_207437	exon71	c.T12170C	p.M4057T	TCTGCATGGAAAT	.	111	38	114	1	.	95	C	124414218	T	C	124414218	3	2	133	1	0	0	0	0	1	0	0	0	4598	1464	51	2	12452	2	DNAH10	12	124414218	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	6690273	124414218	9437677	58	16898											
HS6ST3	266722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	97484795	97484795	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HS6ST3	NM_153456	exon2	c.C759T	p.S253S	CCTGAGCGAGTGG	.	89	27	87	0	.	92	T	97484795	C	T	97484795	2	4	133	1	0	0	0	0	0	0	0	1	7372	767	27	1		1	HS6ST3	13	97484795	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10		97484795	17685083	59	16899											
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29398965	29398965	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APBA2	NM_005503	exon11	c.C1860T	p.S620S	CATGTCCATCAAT	.	121	40	101	0	.	90	T	29398965	C	T	29398965	2	4	133	1	0	0	0	0	0	0	0	1	757	581	21	3		3	APBA2	15	29398965	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10		29398965	73132427	60	16900											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42158099	42158099	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SPTBN5	NM_016642	exon39	c.G6720A	p.E2240E	CTTCACCTCCTGT	.	70	20	61	0	.	91	T	42158099	C	T	42158099	2	4	133	1	0	0	0	0	0	0	0	1	15121	680	24	3		3	SPTBN5	15	42158099	Silent	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	12759134	42158099	60373293	61	16901											
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50534990	50534990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HDC	NM_002112	exon12	c.C1456T	p.R486W	CAACCCGAGGGCT	.	60	17	69	0	.	156	A	50534990	G	A	50534990	3	1	133	1	0	0	0	0	1	0	0	0	7015	1057	37	1	536	1	HDC	15	50534990	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	8376891	50534990	51996402	62	16902											
NEURL4	84461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7230299	7230299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NEURL4	NM_001005408	exon4	c.G823C	p.V275L	TGCTCACCACCTC	.	28	6	56	0	.	46	G	7230299	C	G	7230299	3	3	133	1	0	0	0	0	1	0	0	0	10347	507	18	4	3969	4	NEURL4	17	7230299	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10		7230299	73964911	63	16903											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	66	32	121	1	.	70225	C	7578271	T	C	7578271	3	2	133	1	0	0	0	0	1	0	0	0	16378	1464	51	2	716	2	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	347972	7578271	73616939	64	16904											
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9453375	9453375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF559	NM_001202406	exon6	c.A1440C	p.K480N	TGGGAAAGCCTTC	.	87	47	144	0	.	91	C	9453375	A	C	9453375	3	2	133	1	0	0	0	0	1	0	0	0	17987	69	3	5	1262	5	ZNF559	19	9453375	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10		9453375	49675608	65	16905											
LHB	3972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49519808	49519808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LHB	NM_000894	exon2	c.C179A	p.T60N	ACCATGGTGGGGC	.	88	43	82	0	.	90	T	49519808	G	T	49519808	3	4	133	1	0	0	0	0	1	0	0	0	8761	1261	44	3	254	3	LHB	19	49519808	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	40066433	49519808	9609175	66	16906											
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54417766	54417766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CACNG7	NM_031896	exon2	c.G209T	p.G70V	AGAAAGGTCGCTG	.	127	31	140	0	.	91	T	54417766	G	T	54417766	3	4	133	1	0	0	0	0	1	0	0	0	2562	1261	44	3	215	3	CACNG7	19	54417766	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	4897958	54417766	4711217	67	16907											
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2635458	2635458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOP56	NM_006392	exon5	c.A434G	p.Q145R	AAGCACAGCTGGG	.	50	19	60	0	.	92	G	2635458	A	G	2635458	3	3	133	1	0	0	0	0	1	0	0	0	10539	188	7	2	452	2	NOP56	20	2635458	Missense_Mutation	SNP	A	TCGA-FV-A3I1-01A-11D-A22F-10		2635458	60390062	68	16908											
PLK1S1	55857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21142904	21142904	+	RNA	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	TTTATCTGAAGGC	.	110	39	100	0	.	.	A	21142904	T	A	21142904	1	1	133	0	1	0	0	0	0	0	0	0	12095	1567	55	4		4	PLK1S1	20	21142904	RNA	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	18507446	21142904	41882616	69	16909											
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3227926	3227926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MXRA5	NM_015419	exon7	c.C8318T	p.S2773L	AGATGCGACTTAT	.	237	74	276	1	.	136	A	3227926	G	A	3227926	3	1	133	1	0	0	0	0	1	0	0	0	10003	1059	37	1	172	1	MXRA5	23	3227926	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10		3227926	152042634	70	16910											
ZFX	7543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24229378	24229378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZFX	NM_003410	exon10	c.C2303A	p.S768Y	TTATTTCCATTCA	.	310	111	352	0	.	132	A	24229378	C	A	24229378	3	1	133	1	0	0	0	0	1	0	0	0	17658	855	30	3	2388	3	ZFX	23	24229378	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	21001452	24229378	131041182	71	16911											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149524	34149524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM47A	NM_203408	exon1	c.C872G	p.T291R	GGCTCTGTGGGTT	.	136	43	156	0	.	134	C	34149524	G	C	34149524	3	2	133	1	0	0	0	0	1	0	0	0	5569	1377	48	4	1507	4	FAM47A	23	34149524	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	9920146	34149524	121121036	72	16912											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	43655030	43655030	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAOB	NM_000898	exon7	c.A724T	p.R242X	TTTCTCTTGTCTG	.	116	44	121	0	.	555	A	43655030	T	A	43655030	4	1	133	1	0	0	0	0	0	1	0	0	9226	1617	56	4	874	4	MAOB	23	43655030	Nonsense_Mutation	SNP	T	TCGA-FV-A3I1-01A-11D-A22F-10	9505506	43655030	111615530	73	16913											
MTMR8	55613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63548663	63548663	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MTMR8	NM_017677	exon12	c.C1470A	p.P490P	GTTGTAGGGCACA	.	35	12	26	0	.	195	T	63548663	G	T	63548663	2	4	133	1	0	0	0	0	0	0	0	1	9949	987	35	3		3	MTMR8	23	63548663	Silent	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	19893633	63548663	91721897	74	16914											
PIN4	5303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417258	71417258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PIN4	NM_006223	exon4	c.C353A	p.P118Q	TGGGACCATTTCA	.	308	94	270	1	.	130	A	71417258	C	A	71417258	3	1	133	1	0	0	0	0	1	0	0	0	11931	594	21	3	367	3	PIN4	23	71417258	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	7868595	71417258	83853302	75	16915											
NXF2	56001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101615541	101615541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NXF2	NM_022053	exon23	c.C1862T	p.A621V	TTGAAGGCCTCCG	.	887	73	813	1	.	46	A	101615541	G	A	101615541	3	1	133	1	0	0	0	0	1	0	0	0	10783	1203	42	3	1987	3	NXF2	23	101615541	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	30198283	101615541	53655019	76	16916											
FAM127C	441518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134156305	134156305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM127C	NM_001078173	exon1	c.C185T	p.A62V	TTCAGGGCGTCGT	.	160	54	137	0	.	62	A	134156305	G	A	134156305	3	1	133	1	0	0	0	0	1	0	0	0	5433	1203	42	3	160	3	FAM127C	23	134156305	Missense_Mutation	SNP	G	TCGA-FV-A3I1-01A-11D-A22F-10	32540764	134156305	21114255	77	16917											
L1CAM	3897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153136308	153136308	+	Missense_Mutation	SNP	C	C	A	rs202000092	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	L1CAM	NM_000425	exon6	c.G631T	p.A211S	AGTGGGCGTGGCA	.	218	71	225	1	.	138	A	153136308	C	A	153136308	3	1	133	1	0	0	0	0	1	0	0	0	8588	768	27	1	3234	1	L1CAM	23	153136308	Missense_Mutation	SNP	C	TCGA-FV-A3I1-01A-11D-A22F-10	18980003	153136308	2134252	78	16918											
PEX14	5195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10678434	10678434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PEX14	NM_004565	exon5	c.T344C	p.I115T	CCATCATCATGGC	.	25	9	31	0	.	90	C	10678434	T	C	10678434	3	2	134	1	0	0	0	0	1	0	0	0	11742	1435	50	2	362	2	PEX14	1	10678434	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10		10678434	238572187	1	16919											
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	114255975	114255975	+	Nonsense_Mutation	SNP	G	G	A	rs61730007	byfrequency;alternate_allele	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PHTF1	NM_006608	exon7	c.C709T	p.Q237X	GACATTGTCTCCT	.	216	72	175	0	G|0.991;T|0.009	91	A	114255975	G	A	114255975	4	1	134	1	0	0	0	0	0	1	0	0	11862	1386	48	3	1627	3	PHTF1	1	114255975	Nonsense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	103577541	114255975	134994646	2	16920											
RFX5	5993	broad.mit.edu;bcgsc.ca	37	1	151316341	151316341	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFX5	NM_000449	exon9	c.A573G	p.E191E	GGTTACTTCTGGG	.	80	4	107	0	.	91	C	151316341	T	C	151316341	2	2	134	1	0	0	0	0	0	0	0	1	13266	1606	56	2		2	RFX5	1	151316341	Silent	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	37060366	151316341	97934280	3	16921											
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200587131	200587131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIF14	NM_014875	exon2	c.721delC	p.Q241fs	TGCTCTGAGTAGG	.	137	56	157	0	.	140	-	200587131	G	-	200587131	7	5	134	1	0	1	0	1	0	0	0	0	8276	1299	45	0	4341	0	KIF14	1	200587131	Frame_Shift_Del	DEL	G	TCGA-FV-A3R2-01A-11D-A22F-10	49270790	200587131	48663490	4	16922											
LGR6	59352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202249945	202249945	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR6	NM_001017403	exon6	c.C681A	p.T227T	GGGGACCCACAGC	.	73	26	44	0	.	160	A	202249945	C	A	202249945	2	1	134	1	0	0	0	0	0	0	0	1	8758	610	22	3		3	LGR6	1	202249945	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	1662814	202249945	47000676	5	16923											
ADIPOR1	51094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202914287	202914287	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADIPOR1	NM_015999	exon5	c.G441T	p.L147L	GAGAAACAGCACG	.	125	47	129	2	.	90	A	202914287	C	A	202914287	2	1	134	1	0	0	0	0	0	0	0	1	318	465	17	3		3	ADIPOR1	1	202914287	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	664342	202914287	46336334	6	16924											
CR2	1380	ucsc.edu;bcgsc.ca	37	1	207642179	207642179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CR2	NM_001006658	exon4	c.T669A	p.N223K	TCCCAATGGGAAG	.	251	94	237	2	.	232	A	207642179	T	A	207642179	3	1	134	1	0	0	0	0	1	0	0	0	3842	1461	51	4	683	4	CR2	1	207642179	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	4727892	207642179	41608442	7	16925											
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248790035	248790035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR2T11	NM_001001964	exon1	c.T395C	p.L132P	TTCATCAGGACTG	.	88	40	86	0	.	69	G	248790035	A	G	248790035	3	3	134	1	0	0	0	0	1	0	0	0	11018	188	7	2	559	2	OR2T11	1	248790035	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	41147856	248790035	460586	8	16926											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54853192	54853192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SPTBN1	NM_003128	exon12	c.G1465A	p.E489K	GAGCTCGAGGCCG	.	108	42	134	0	.	140	A	54853192	G	A	54853192	3	1	134	1	0	0	0	0	1	0	0	0	15118	1059	37	1	1620	1	SPTBN1	2	54853192	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		54853192	188346181	9	16927											
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141660519	141660519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LRP1B	NM_018557	exon23	c.G3736T	p.D1246Y	CTACATCCAGCTT	.	116	46	120	1	.	311	A	141660519	C	A	141660519	3	1	134	1	0	0	0	0	1	0	0	0	8955	855	30	3	10339	3	LRP1B	2	141660519	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	86807327	141660519	101538854	10	16928											
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152695776	152695776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNB4	NM_000726	exon14	c.T1420A	p.L474M	AAGACAAGCGGTT	.	180	77	173	0	.	24	T	152695776	A	T	152695776	3	4	134	1	0	0	0	0	1	0	0	0	2555	69	3	4	146	4	CACNB4	2	152695776	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	11035257	152695776	90503597	11	16929											
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198436936	198436936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFTN2	NM_144629	exon9	c.C1302A	p.D434E	GGTTGTGTCTAAT	.	170	62	162	0	.	90	T	198436936	G	T	198436936	3	4	134	1	0	0	0	0	1	0	0	0	13259	1368	48	3	207	3	RFTN2	2	198436936	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	45741160	198436936	44762437	12	16930											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463777	241463777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANKMY1	NM_016552	exon7	c.G1090A	p.V364I	TTGGAACAACTGG	.	56	17	65	0	.	90	T	241463777	C	T	241463777	3	4	134	1	0	0	0	0	1	0	0	0	634	478	17	3	1779	3	ANKMY1	2	241463777	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	43026841	241463777	1735596	13	16931											
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14551403	14551403	+	RNA	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GRIP2	.	.	.	.	ATGGTGATGCCCA	.	39	4	24	0	.	69	G	14551403	A	G	14551403	1	3	134	0	1	0	0	0	0	0	0	0	6788	333	12	2		2	GRIP2	3	14551403	RNA	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10		14551403	183471027	14	16932											
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18462375	18462375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SATB1	NM_002971	exon2	c.A85C	p.K29Q	CAATCTTGGCTGG	.	164	95	134	0	.	228	G	18462375	T	G	18462375	3	3	134	1	0	0	0	0	1	0	0	0	13853	1821	63	5	2246	5	SATB1	3	18462375	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	3910972	18462375	179560055	15	16933											
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	102157387	102157387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZPLD1	NM_175056	exon2	c.C104T	p.A35V	GGTCTGCTCAGTT	.	183	59	123	1	.	72	T	102157387	C	T	102157387	3	4	134	1	0	0	0	0	1	0	0	0	18218	797	28	3	110	3	ZPLD1	3	102157387	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	83695012	102157387	95865043	16	16934											
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54373548	54373548	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LNX1	NM_001126328	exon4	c.G711C	p.G237G	TGCACTCCCGCTC	.	110	37	115	0	.	229	G	54373548	C	G	54373548	2	3	134	1	0	0	0	0	0	0	0	1	8865	842	30	4		4	LNX1	4	54373548	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		54373548	136780728	17	16935											
TMPRSS11B	132724	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	69095161	69095161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMPRSS11B	NM_182502	exon8	c.C760T	p.Q254X	TGTTTTGGACTTT	.	204	64	197	1	.	91	A	69095161	G	A	69095161	4	1	134	1	0	0	0	0	0	1	0	0	16237	1357	47	3	502	3	TMPRSS11B	4	69095161	Nonsense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	14721613	69095161	122059115	18	16936											
MRPL1	65008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	78806454	78806454	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MRPL1	NM_020236	exon4	c.A447G	p.P149P	ATACCCATTTGCT	.	127	55	131	0	.	90	G	78806454	A	G	78806454	2	3	134	1	0	0	0	0	0	0	0	1	9774	204	8	2		2	MRPL1	4	78806454	Silent	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	9711293	78806454	112347822	19	16937											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26889956	26889956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CDH9	NM_016279	exon9	c.A1501G	p.K501E	CAGGTTTTGCATT	.	139	48	95	0	.	99	C	26889956	T	C	26889956	3	2	134	1	0	0	0	0	1	0	0	0	3117	1850	64	2	884	2	CDH9	5	26889956	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10		26889956	154025304	20	16938											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82836955	82836955	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	VCAN	NM_004385	exon8	c.T8133A	p.A2711A	AAAAGCTGAAGCA	.	94	27	88	0	.	238	A	82836955	T	A	82836955	2	1	134	1	0	0	0	0	0	0	0	1	17135	1567	55	4		4	VCAN	5	82836955	Silent	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	55946999	82836955	98078305	21	16939											
SKP1	6500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133494206	133494206	+	Silent	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SKP1	NM_170679	exon5	c.T396G	p.P132P	CTCCTCAGGAGTT	.	126	44	106	0	.	226	C	133494206	A	C	133494206	2	2	134	1	0	0	0	0	0	0	0	1	14361	175	7	5		5	SKP1	5	133494206	Silent	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	50657251	133494206	47421054	22	16940											
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138856001	138856001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM173	NM_198282	exon8	c.G985T	p.V329F	GGAGAACCTCCTG	.	67	13	33	0	.	69	A	138856001	C	A	138856001	3	1	134	1	0	0	0	0	1	0	0	0	16086	507	18	3	158	3	TMEM173	5	138856001	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	5361795	138856001	42059259	23	16941											
PPP2R2B	5521	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	146077624	146077624	+	Silent	SNP	C	C	T	rs200884068		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP2R2B	NM_181675	exon4	c.G570A	p.K190K	TAAACTCTTCAGG	.	264	78	169	1	C|0.999;T|0.001	659	T	146077624	C	T	146077624	2	4	134	1	0	0	0	0	0	0	0	1	12385	912	32	3		3	PPP2R2B	5	146077624	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	7221623	146077624	34837636	24	16942											
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160033981	160033981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ATP10B	NM_025153	exon19	c.C2951A	p.S984Y	GTGATGGATGGTG	.	300	166	187	1	.	72	T	160033981	G	T	160033981	3	4	134	1	0	0	0	0	1	0	0	0	1117	1174	41	3	1466	3	ATP10B	5	160033981	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	13956357	160033981	20881279	25	16943											
GMNN	51053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24785914	24785914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GMNN	NM_001251991	exon7	c.G517C	p.E173Q	AATCAGGAATTTG	.	143	40	71	0	.	228	C	24785914	G	C	24785914	3	2	134	1	0	0	0	0	1	0	0	0	6493	1175	41	4	539	4	GMNN	6	24785914	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		24785914	146329153	26	16944											
OR12D2	26529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29364910	29364910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR12D2	NM_013936	exon1	c.C434A	p.T145K	CCATCACAATCTG	.	227	63	160	0	.	69	A	29364910	C	A	29364910	3	1	134	1	0	0	0	0	1	0	0	0	10931	478	17	3	436	3	OR12D2	6	29364910	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	4578996	29364910	141750157	27	16945											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778524	31778524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HSPA1L	NM_005527	exon2	c.G1226A	p.G409E	ACGCCCCCAGCCG	.	149	38	104	0	.	230	T	31778524	C	T	31778524	3	4	134	1	0	0	0	0	1	0	0	0	7410	623	22	3	703	3	HSPA1L	6	31778524	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	2413614	31778524	139336543	28	16946											
IP6K3	117283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33690707	33690707	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IP6K3	NM_001142883	exon7	c.C1023T	p.G341G	CGGGCTGCCTGGG	.	166	41	107	0	.	240	A	33690707	G	A	33690707	2	1	134	1	0	0	0	0	0	0	0	1	7790	1306	46	3		3	IP6K3	6	33690707	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	1912183	33690707	137424360	29	16947											
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110059526	110059526	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FIG4	NM_014845	exon7	c.647-2A>G	.	TTTTTCAGGGGTA	.	90	54	121	0	.	69	G	110059526	A	G	110059526	5	3	134	1	0	0	0	0	0	0	1	0	5888	202	7	2	671	2	FIG4	6	110059526	Splice_Site	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	76368819	110059526	61055541	30	16948											
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34118587	34118587	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BMPER	NM_133468	exon13	c.G1197T	p.S399S	TGCCTCGCCCTTC	.	70	21	58	0	.	92	T	34118587	G	T	34118587	2	4	134	1	0	0	0	0	0	0	0	1	1468	1074	38	1		1	BMPER	7	34118587	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		34118587	125020076	31	16949											
TYW1	55253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66463919	66463919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TYW1	NM_018264	exon3	c.G251T	p.G84V	TTTATGGTTCTCA	.	131	35	89	0	.	91	T	66463919	G	T	66463919	3	4	134	1	0	0	0	0	1	0	0	0	16815	1261	44	3	261	3	TYW1	7	66463919	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	32345332	66463919	92674744	32	16950											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113519285	113519285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP1R3A	NM_002711	exon4	c.G1862A	p.R621K	CCAGTTCTTGATG	.	309	163	273	0	.	832	T	113519285	C	T	113519285	3	4	134	1	0	0	0	0	1	0	0	0	12371	913	32	3	1510	3	PPP1R3A	7	113519285	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	47055366	113519285	45619378	33	16951											
WNT2	7472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116955172	116955172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	WNT2	NM_003391	exon3	c.G541A	p.D181N	TGGCATCCTTTCC	.	354	94	195	0	.	1011	T	116955172	C	T	116955172	3	4	134	1	0	0	0	0	1	0	0	0	17383	855	30	3	553	3	WNT2	7	116955172	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	3435887	116955172	42183491	34	16952											
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150644109	150644109	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KCNH2	NM_000238	exon14	c.T3186A	p.T1062T	CAGGACAGTGGCC	.	166	46	98	0	.	94	T	150644109	A	T	150644109	2	4	134	1	0	0	0	0	0	0	0	1	8032	175	7	4		4	KCNH2	7	150644109	Silent	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	33688937	150644109	8494554	35	16953											
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75761417	75761417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PI15	NM_015886	exon6	c.T706A	p.Y236N	CCAAGTTATGGGG	.	259	65	191	0	.	515	A	75761417	T	A	75761417	3	1	134	1	0	0	0	0	1	0	0	0	11868	1754	61	4	724	4	PI15	8	75761417	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10		75761417	70602605	36	16954											
ANGPT1	284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108334350	108334350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANGPT1	NM_001199859	exon4	c.A582T	p.L194F	ATGTTCTAATAAA	.	210	45	129	0	.	521	A	108334350	T	A	108334350	3	1	134	1	0	0	0	0	1	0	0	0	610	1519	53	4	938	4	ANGPT1	8	108334350	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	32572933	108334350	38029672	37	16955											
TRPS1	7227	hgsc.bcm.edu;bcgsc.ca	37	8	116617020	116617020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TRPS1	NM_014112	exon4	c.1176delT	p.S392fs	CTTGTTAGAGTTT	.	216	56	172	2	.	229	-	116617020	A	-	116617020	7	5	134	1	0	1	0	1	0	0	0	0	16590	407	15	0	2724	0	TRPS1	8	116617020	Frame_Shift_Del	DEL	A	TCGA-FV-A3R2-01A-11D-A22F-10	8282670	116617020	29747002	38	16956											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125072474	125072474	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FER1L6	NM_001039112	exon23	c.C2928G	p.T976T	CATCACCCAGATC	.	71	13	52	0	.	100	G	125072474	C	G	125072474	2	3	134	1	0	0	0	0	0	0	0	1	5815	610	22	4		4	FER1L6	8	125072474	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	8455454	125072474	21291548	39	16957											
CTSL1	1514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90342998	90342998	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CTSL1	NM_145918	exon3	c.G183A	p.L61L	TGAACTGCACAAT	.	29	17	53	1	.	93	A	90342998	G	A	90342998	2	1	134	1	0	0	0	0	0	0	0	1	4038	1306	46	3		3	CTSL1	9	90342998	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		90342998	50870433	40	16958											
ZNF618	114991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116731402	116731402	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF618	NM_133374	exon2	c.C39T	p.D13D	GGCTGACGGAGCC	.	20	16	30	0	.	22	T	116731402	C	T	116731402	2	4	134	1	0	0	0	0	0	0	0	1	18039	535	19	1		1	ZNF618	9	116731402	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	26388404	116731402	24482029	41	16959											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	135786464	135786464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TSC1	NM_000368	exon11	c.1066delA	p.T356fs	GAGTGGTCATACC	.	50	28	87	0	.	1906	-	135786464	T	-	135786464	7	5	134	1	0	1	0	1	0	0	0	0	16602	1667	58	0	2480	0	TSC1	9	135786464	Frame_Shift_Del	DEL	T	TCGA-FV-A3R2-01A-11D-A22F-10	19055062	135786464	5426967	42	16960											
DNMBP	23268	broad.mit.edu;bcgsc.ca	37	10	101656127	101656127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DNMBP	NM_015221	exon10	c.A2948G	p.D983G	AGGCTATCTTCAT	.	149	6	141	1	.	233	C	101656127	T	C	101656127	3	2	134	1	0	0	0	0	1	0	0	0	4674	1435	50	2	1817	2	DNMBP	10	101656127	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10		101656127	33878620	43	16961											
FANK1	92565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127697046	127697046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FANK1	NM_145235	exon8	c.G776T	p.R259M	ATCAGAGGGTGGC	.	109	41	89	0	.	91	T	127697046	G	T	127697046	3	4	134	1	0	0	0	0	1	0	0	0	5672	1000	35	3	806	3	FANK1	10	127697046	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	26040919	127697046	7837701	44	16962											
IFITM5	387733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	299408	299408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IFITM5	NM_001025295	exon1	c.C83T	p.A28V	TGCGGGGCCCCCA	.	61	29	35	0	.	514	A	299408	G	A	299408	3	1	134	1	0	0	0	0	1	0	0	0	7529	1203	42	3	323	3	IFITM5	11	299408	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		299408	134707108	45	16963											
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	27389536	27389536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR4	NM_018490	exon18	c.G2734T	p.E912X	AATCTTCTTCATC	.	58	17	83	0	.	91	A	27389536	C	A	27389536	4	1	134	1	0	0	0	0	0	1	0	0	8756	922	32	3	125	3	LGR4	11	27389536	Nonsense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	27090128	27389536	107616980	46	16964											
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61502408	61502408	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DAGLA	NM_006133	exon10	c.C1062A	p.I354I	TGCCATCCGGCGC	.	37	11	57	0	.	92	A	61502408	C	A	61502408	2	1	134	1	0	0	0	0	0	0	0	1	4226	845	30	3		3	DAGLA	11	61502408	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	34112872	61502408	73504108	47	16965											
C11orf57	55216	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111953465	111953465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	C11orf57	NM_001082969	exon6	c.A651C	p.K217N	CAAAAAACCTGCT	.	147	49	135	1	.	155	C	111953465	A	C	111953465	3	2	134	1	0	0	0	0	1	0	0	0	1650	40	2	5	669	5	C11orf57	11	111953465	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	50451057	111953465	23053051	48	16966											
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123900948	123900948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR10G8	NM_001004464	exon1	c.T619C	p.S207P	GTGGCCTCGGGCT	.	215	95	246	0	.	92	C	123900948	T	C	123900948	3	2	134	1	0	0	0	0	1	0	0	0	10903	1551	54	2	621	2	OR10G8	11	123900948	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	11947483	123900948	11105568	49	16967											
ROBO4	54538	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	124766856	124766856	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ROBO4	NM_019055	exon2	c.C372A	p.V124V	TCTGCTGACTGCC	.	54	17	62	0	.	92	T	124766856	G	T	124766856	2	4	134	1	0	0	0	0	0	0	0	1	13516	1277	45	3		3	ROBO4	11	124766856	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	865908	124766856	10239660	50	16968											
FOXRED1	55572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126145999	126145999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FOXRED1	NM_017547	exon8	c.A856G	p.I286V	TGCGCCATTGTGA	.	81	25	94	0	.	90	G	126145999	A	G	126145999	3	3	134	1	0	0	0	0	1	0	0	0	6033	217	8	2	886	2	FOXRED1	11	126145999	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	1379143	126145999	8860517	51	16969											
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49176704	49176704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADCY6	NM_020983	exon2	c.G514T	p.A172S	CGGGTGCGGCGTG	.	52	23	43	0	.	90	A	49176704	C	A	49176704	3	1	134	1	0	0	0	0	1	0	0	0	298	768	27	1	3076	1	ADCY6	12	49176704	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		49176704	84675191	52	16970											
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54676893	54676893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HNRNPA1	NM_031157	exon8	c.C782G	p.S261C	GTTACTCTGGAGG	.	81	34	71	0	.	93	G	54676893	C	G	54676893	3	3	134	1	0	0	0	0	1	0	0	0	7257	913	32	4	812	4	HNRNPA1	12	54676893	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	5500189	54676893	79175002	53	16971											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	101520844	101520844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANO4	NM_178826	exon26	c.C2759A	p.P920Q	AGTGGCCGTGACC	.	73	26	87	0	.	96	A	101520844	C	A	101520844	3	1	134	1	0	0	0	0	1	0	0	0	699	652	23	1	2857	1	ANO4	12	101520844	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	46843951	101520844	32331051	54	16972											
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	118298110	118298110	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KSR2	NM_173598	exon2	c.A220T	p.K74X	CCTCCTTGCGCAC	.	23	8	24	0	.	1449	A	118298110	T	A	118298110	4	1	134	1	0	0	0	0	0	1	0	0	8582	1821	63	4	2621	4	KSR2	12	118298110	Nonsense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	16777266	118298110	15553785	55	16973											
RPL10L	140801	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	47120791	47120791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RPL10L	NM_080746	exon1	c.G149A	p.G50D	ATGTGGCCACCGA	.	91	35	92	1	.	91	T	47120791	C	T	47120791	3	4	134	1	0	0	0	0	1	0	0	0	13556	739	26	3	499	3	RPL10L	14	47120791	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		47120791	60228749	56	16974											
ZNF410	57862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74363143	74363143	+	Silent	SNP	G	G	A	rs150263864		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF410	NM_001242924	exon5	c.G345A	p.P115P	ATCCCCGGAGTTT	.	122	33	100	0	G|1.000;A|0.000	91	A	74363143	G	A	74363143	2	1	134	1	0	0	0	0	0	0	0	1	17887	1103	39	1		1	ZNF410	14	74363143	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	27242352	74363143	32986397	57	16975											
GSTZ1	2954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77796672	77796672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GSTZ1	NM_145870	exon8	c.G494T	p.C165F	ATCTGTGCTTGGT	.	72	27	79	0	.	90	T	77796672	G	T	77796672	3	4	134	1	0	0	0	0	1	0	0	0	6848	1319	46	3	524	3	GSTZ1	14	77796672	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	3433529	77796672	29552868	58	16976											
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93720038	93720038	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BTBD7	NM_001002860	exon7	c.C1707A	p.I569I	AACATAGATGCCA	.	90	33	72	0	.	91	T	93720038	G	T	93720038	2	4	134	1	0	0	0	0	0	0	0	1	1546	932	33	3		3	BTBD7	14	93720038	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	15923366	93720038	13629502	59	16977											
SERPINA12	145264	broad.mit.edu;bcgsc.ca	37	14	94964608	94964608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SERPINA12	NM_173850	exon3	c.A127G	p.M43V	CTGCCATCCTTTG	.	119	5	94	0	.	310	C	94964608	T	C	94964608	3	2	134	1	0	0	0	0	1	0	0	0	14089	1435	50	2	1133	2	SERPINA12	14	94964608	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	1244570	94964608	12384932	60	16978											
NARG2	79664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	60740303	60740303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NARG2	NM_024611	exon11	c.G2161A	p.E721K	GGTATTCCGATGT	.	77	31	62	0	.	227	T	60740303	C	T	60740303	3	4	134	1	0	0	0	0	1	0	0	0	10169	864	30	3	811	3	NARG2	15	60740303	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		60740303	41791089	61	16979											
MAP2K1	5604	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66729181	66729181	+	Missense_Mutation	SNP	A	A	G	rs121908595		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP2K1	NM_002755	exon3	c.A389G	p.Y130C	GCTTCTATGGTGC	.	52	16	76	1	.	978	G	66729181	A	G	66729181	3	3	134	1	0	0	0	0	1	0	0	0	9236	449	16	2	399	2	MAP2K1	15	66729181	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	5988878	66729181	35802211	62	16980											
CHRNA3	1136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78893648	78893648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHRNA3	NM_000743	exon5	c.C1336A	p.Q446K	CACTTTGGATGGC	.	239	90	214	1	.	515	T	78893648	G	T	78893648	3	4	134	1	0	0	0	0	1	0	0	0	3384	1357	47	3	274	3	CHRNA3	15	78893648	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	12164467	78893648	23637744	63	16981											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	360070	360070	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	AXIN1	NM_181050	exon5	c.1020-1G>T	.	CCATCCCTGTCCA	.	24	12	35	0	.	684	A	360070	C	A	360070	5	1	134	1	0	0	0	0	0	0	1	0	1236	695	24	3	1601	3	AXIN1	16	360070	Splice_Site	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		360070	89994683	64	16982											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1580416	1580416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRPF8	NM_006445	exon15	c.T2035A	p.S679T	AATGTGACTCCAC	.	59	21	53	0	.	525	T	1580416	A	T	1580416	3	4	134	1	0	0	0	0	1	0	0	0	12575	275	10	4	5088	4	PRPF8	17	1580416	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10		1580416	79614794	65	16983											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	rs121913344		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	TP53,brain,glioma,+2	TP53	NM_000546	exon8	c.C916T	p.R306X	TACCTCGCTTAGT	.	39	21	64	1	.	70225	A	7577022	G	A	7577022	4	1	134	1	0	0	0	0	0	1	0	0	16378	1095	38	1	370	1	TP53	17	7577022	Nonsense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	5996606	7577022	73618188	66	16984											
TMEM88	92162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7758491	7758491	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM88	NM_203411	exon1	c.C99T	p.A33A	AACAGCCCAGAAT	.	25	18	46	0	.	68	T	7758491	C	T	7758491	2	4	134	1	0	0	0	0	0	0	0	1	16209	610	22	3		3	TMEM88	17	7758491	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	181469	7758491	73436719	67	16985											
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7811224	7811224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHD3	NM_001005271	exon34	c.G5216T	p.G1739V	TAAAAGGTGACCG	.	24	15	74	0	.	228	T	7811224	G	T	7811224	3	4	134	1	0	0	0	0	1	0	0	0	3326	1261	44	3	5454	3	CHD3	17	7811224	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	52733	7811224	73383986	68	16986											
ALOX12B	242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7983975	7983975	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ALOX12B	NM_001139	exon6	c.650+1G>T	.	GACTCACATGGGC	.	61	41	83	1	.	226	A	7983975	C	A	7983975	5	1	134	1	0	0	0	0	0	0	1	0	537	492	17	3	1498	3	ALOX12B	17	7983975	Splice_Site	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	172751	7983975	73211235	69	16987											
ODF4	146852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8243610	8243610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ODF4	NM_153007	exon1	c.C241T	p.Q81X	ATGGCCCAGGTGT	.	41	28	67	0	.	69	T	8243610	C	T	8243610	4	4	134	1	0	0	0	0	0	1	0	0	10833	595	21	3	243	3	ODF4	17	8243610	Nonsense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	259635	8243610	72951600	70	16988											
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45015970	45015970	+	Silent	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GOSR2	NM_004287	exon6	c.T483G	p.T161T	GGGGACTCAGAAG	.	68	22	69	0	.	92	G	45015970	T	G	45015970	2	3	134	1	0	0	0	0	0	0	0	1	6578	1538	54	5		5	GOSR2	17	45015970	Silent	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	36772360	45015970	36179240	71	16989											
TOM1L1	10040	broad.mit.edu;bcgsc.ca	37	17	53027430	53027430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TOM1L1	NM_005486	exon14	c.C1313T	p.P438L	TCCAGCCACCTAA	.	84	5	79	0	.	91	T	53027430	C	T	53027430	3	4	134	1	0	0	0	0	1	0	0	0	16349	594	21	3	1367	3	TOM1L1	17	53027430	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	8011460	53027430	28167780	72	16990											
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73840324	73840324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	UNC13D	NM_199242	exon1	c.C95T	p.P32L	GGCGGGGGATCCT	.	21	10	27	0	.	92	A	73840324	G	A	73840324	3	1	134	1	0	0	0	0	1	0	0	0	16984	1232	43	3	3305	3	UNC13D	17	73840324	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	20812894	73840324	7354886	73	16991											
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14542851	14542851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	POTEC	NM_001137671	exon1	c.G295T	p.G99C	ACTTGCCCATCTT	.	268	91	247	0	.	3	A	14542851	C	A	14542851	3	1	134	1	0	0	0	0	1	0	0	0	12262	623	22	3	1377	3	POTEC	18	14542851	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		14542851	63534397	74	16992											
DTNA	1837	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	32418793	32418793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DTNA	NM_001390	exon12	c.C1257A	p.N419K	GAACAACCCCTCA	.	100	28	82	1	.	153	A	32418793	C	A	32418793	3	1	134	1	0	0	0	0	1	0	0	0	4788	506	18	3	1338	3	DTNA	18	32418793	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	17875942	32418793	45658455	75	16993											
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	52901914	52901914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TCF4	NM_001243226	exon17	c.G1657A	p.V553M	TCCCCACCTGAAA	.	27	16	45	0	.	523	T	52901914	C	T	52901914	3	4	134	1	0	0	0	0	1	0	0	0	15692	521	18	3	680	3	TCF4	18	52901914	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	20483121	52901914	25175334	76	16994											
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417752	70417752	+	Silent	SNP	G	G	A	rs145217972		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NETO1	NM_001201465	exon9	c.C1086T	p.I362I	CTGTACGATGACA	.	71	21	58	0	G|1.000;A|0.000	94	A	70417752	G	A	70417752	2	1	134	1	0	0	0	0	0	0	0	1	10339	1048	37	1		1	NETO1	18	70417752	Silent	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	17515838	70417752	7659496	77	16995											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057255	9057255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MUC16	NM_024690	exon3	c.C30191A	p.T10064K	GTGCTTGTGTCTG	.	90	45	110	0	.	566	T	9057255	G	T	9057255	3	4	134	1	0	0	0	0	1	0	0	0	9973	1377	48	3	13660	3	MUC16	19	9057255	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		9057255	50071728	78	16996											
PRKCSH	5589	ucsc.edu;bcgsc.ca	37	19	11548763	11548763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRKCSH	NM_001001329	exon4	c.C263T	p.P88L	ATATCCCCTCCAA	.	134	47	147	2	.	90	T	11548763	C	T	11548763	3	4	134	1	0	0	0	0	1	0	0	0	12516	623	22	3	273	3	PRKCSH	19	11548763	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	2491508	11548763	47580220	79	16997											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13387893	13387893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNA1A	NM_001127221	exon23	c.T3875C	p.M1292T	ATCACCATCTCAA	.	55	17	48	0	.	67	G	13387893	A	G	13387893	3	3	134	1	0	0	0	0	1	0	0	0	2538	217	8	2	3850	2	CACNA1A	19	13387893	Missense_Mutation	SNP	A	TCGA-FV-A3R2-01A-11D-A22F-10	1839130	13387893	45741090	80	16998											
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34810943	34810943	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIAA0355	NM_014686	exon3	c.C627T	p.G209G	CAGCGGCAGTGGC	.	95	41	107	0	.	91	T	34810943	C	T	34810943	2	4	134	1	0	0	0	0	0	0	0	1	8170	697	25	3		3	KIAA0355	19	34810943	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	21423050	34810943	24318040	81	16999											
SIRT2	22933	broad.mit.edu;bcgsc.ca	37	19	39380761	39380761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SIRT2	NM_012237	exon5	c.G250A	p.G84R	CAGCTCCCACCAA	.	74	4	68	1	.	226	T	39380761	C	T	39380761	3	4	134	1	0	0	0	0	1	0	0	0	14338	632	22	3	967	3	SIRT2	19	39380761	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	4569818	39380761	19748222	82	17000											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50411919	50411919	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NUP62	NM_153719	exon3	c.G1146T	p.V382V	CAGCTTCACCTTC	.	58	22	54	0	.	615	A	50411919	C	A	50411919	2	1	134	1	0	0	0	0	0	0	0	1	10768	813	29	3		3	NUP62	19	50411919	Silent	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10	11031158	50411919	8717064	83	17001											
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51169520	51169526	+	Frame_Shift_Del	DEL	CCCACTG	CCCACTG	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	CCCACTG	CCCACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHANK1	NM_016148	exon22	c.5691_5697del	p.1897_1899del	GCCTCCCCCACTG	.	42	19	33	0	.	153	-	51169526	CCCACTG	-	51169520	7	5	134	1	0	1	0	1	0	0	0	0	14264	610	22	0	796	0	SHANK1	19	51169520	Frame_Shift_Del	DEL	CCCACTG	TCGA-FV-A3R2-01A-11D-A22F-10	757601	51169520	7959463	84	17002											
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21380718	21380718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_005446	exon12	c.C1138T	p.P380S	AAGGCCCCGAAAG	.	57	19	65	0	.	.	T	21380718	C	T	21380718	3	4	134	1	0	0	0	0	1	0	0	0	11344	623	22	3	1184	3	P2RX6	22	21380718	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		21380718	29923848	85	17003											
MAPK1	5594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22160192	22160192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAPK1	NM_002745	exon3	c.C439T	p.H147Y	CACGGTGCAGAAC	.	135	46	156	0	.	1405	A	22160192	G	A	22160192	3	1	134	1	0	0	0	0	1	0	0	0	9271	1319	46	3	667	3	MAPK1	22	22160192	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	779474	22160192	29144374	86	17004											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695878	109695878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RGAG1	NM_020769	exon3	c.C2033T	p.A678V	CTGGAGCAATGTC	.	48	38	79	0	.	132	T	109695878	C	T	109695878	3	4	134	1	0	0	0	0	1	0	0	0	13274	710	25	3	2035	3	RGAG1	23	109695878	Missense_Mutation	SNP	C	TCGA-FV-A3R2-01A-11D-A22F-10		109695878	45574682	87	17005											
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130219933	130219933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ARHGAP36	NM_144967	exon9	c.G1151T	p.G384V	TGTTTGGATCTGC	.	80	61	80	0	.	133	T	130219933	G	T	130219933	3	4	134	1	0	0	0	0	1	0	0	0	883	1174	41	3	1181	3	ARHGAP36	23	130219933	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	20524055	130219933	25050627	88	17006											
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135318411	135318411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP7D3	NM_024597	exon7	c.A728G	p.K243R	CGTGGCTTCCTTT	.	41	4	34	0	.	110	C	135318411	T	C	135318411	3	2	134	1	0	0	0	0	1	0	0	0	9269	1609	56	2	1950	2	MAP7D3	23	135318411	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	5098478	135318411	19952149	89	17007											
MPP1	4354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154007594	154007594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MPP1	NM_002436	exon12	c.A1259G	p.E420G	ATGGCCTCAGAGT	.	44	34	44	1	.	132	C	154007594	T	C	154007594	3	2	134	1	0	0	0	0	1	0	0	0	9733	1551	54	2	145	2	MPP1	23	154007594	Missense_Mutation	SNP	T	TCGA-FV-A3R2-01A-11D-A22F-10	18689183	154007594	1262966	90	17008											
USP9Y	8287	broad.mit.edu;bcgsc.ca	37	Y	14968376	14968376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7176A	p.M2392I	ATGTATGGTAGCT	.	94	76	119	1	.	136	A	14968376	G	A	14968376	3	1	134	1	0	0	0	0	1	0	0	0	17088	1348	47	3	7338	3	USP9Y	24	14968376	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10		14968376	44405190	91	17009	91	2									
USP9Y	8287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	14968377	14968377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7177T	p.V2393L	TGTATGGTAGCTC	.	92	75	118	0	.	136	T	14968377	G	T	14968377	3	4	134	1	0	0	0	0	1	0	0	0	17088	1261	44	3	7339	3	USP9Y	24	14968377	Missense_Mutation	SNP	G	TCGA-FV-A3R2-01A-11D-A22F-10	1	14968377	44405189	92	17010	91	2									
PTCHD2	57540	broad.mit.edu;bcgsc.ca	37	1	11584041	11584041	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTCHD2	NM_020780	exon11	c.G2405C	p.R802P	ACATCCGGACGTC	.	86	6	85	0	.	209	C	11584041	G	C	11584041	3	2	135	1	0	0	0	0	1	0	0	0	12733	1116	39	4	2443	4	PTCHD2	1	11584041	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10		11584041	237666580	1	17011											
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211848801	211848801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEK2	NM_002497	exon1	c.C21A	p.D7E	TTCATAGTCCTCA	.	67	10	80	0	.	765	T	211848801	G	T	211848801	3	4	135	1	0	0	0	0	1	0	0	0	10324	1020	36	3	1348	3	NEK2	1	211848801	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	200264760	211848801	37401820	2	17012											
FMN2	56776	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	240371393	240371393	+	Missense_Mutation	SNP	C	C	A	rs201701711	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FMN2	NM_020066	exon5	c.C3281A	p.A1094E	CCGGAGCGGGCAT	.	58	13	76	0	C|0.999;T|0.001	145	A	240371393	C	A	240371393	3	1	135	1	0	0	0	0	1	0	0	0	5950	768	27	1	3299	1	FMN2	1	240371393	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	28522592	240371393	8879228	3	17013											
ACTR1B	10120	ucsc.edu;bcgsc.ca	37	2	98274501	98274501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ACTR1B	NM_005735	exon8	c.A830G	p.E277G	ACCACCTCATGGA	.	38	5	42	0	.	91	C	98274501	T	C	98274501	3	2	135	1	0	0	0	0	1	0	0	0	210	1551	54	2	316	2	ACTR1B	2	98274501	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10		98274501	144924872	4	17014											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747077	121747077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GLI2	NM_005270	exon13	c.G3587A	p.G1196E	GCCCTGGGGGCCT	.	78	19	63	0	.	954	A	121747077	G	A	121747077	3	1	135	1	0	0	0	0	1	0	0	0	6438	1232	43	3	3637	3	GLI2	2	121747077	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	23472576	121747077	121452296	5	17015											
CHL1	10752	broad.mit.edu;bcgsc.ca	37	3	425546	425546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CHL1	NM_001253388	exon17	c.A2224G	p.K742E	CAACCCAAGGAAA	.	97	9	133	0	.	583	G	425546	A	G	425546	3	3	135	1	0	0	0	0	1	0	0	0	3349	131	5	2	2290	2	CHL1	3	425546	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10		425546	197596884	6	17016											
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47452056	47452056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTPN23	NM_015466	exon20	c.C2768T	p.T923I	CTTACACCTACCC	.	62	18	135	0	.	227	T	47452056	C	T	47452056	3	4	135	1	0	0	0	0	1	0	0	0	12788	507	18	3	2846	3	PTPN23	3	47452056	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	47026510	47452056	150570374	7	17017											
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160141354	160141354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SMC4	NM_005496	exon13	c.T2161G	p.L721V	GACAACTTGGATC	.	103	24	85	0	.	291	G	160141354	T	G	160141354	3	3	135	1	0	0	0	0	1	0	0	0	14785	1606	56	5	2211	5	SMC4	3	160141354	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	112689298	160141354	37881076	8	17018											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513066	195513066	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC4	NM_018406	exon2	c.C5385A	p.V1795V	GTCGGTGACAGGA	.	411	53	539	0	.	90	T	195513066	G	T	195513066	2	4	135	1	0	0	0	0	0	0	0	1	9978	1277	45	3		3	MUC4	3	195513066	Silent	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	35371712	195513066	2509364	9	17019											
COX18	285521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73923971	73923971	+	Missense_Mutation	SNP	C	C	A	rs201251329	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COX18	NM_173827	exon6	c.G862T	p.V288L	GGCCCACGAAGCT	.	129	36	123	1	C|0.999;T|0.001	90	A	73923971	C	A	73923971	3	1	135	1	0	0	0	0	1	0	0	0	3767	536	19	1	143	1	COX18	4	73923971	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		73923971	117230305	10	17020											
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86643102	86643102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARHGAP24	NM_001025616	exon3	c.A245T	p.K82M	CAGGGAAGTTCCT	.	172	22	207	0	.	227	T	86643102	A	T	86643102	3	4	135	1	0	0	0	0	1	0	0	0	873	72	3	4	251	4	ARHGAP24	4	86643102	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	12719131	86643102	104511174	11	17021											
CLGN	1047	broad.mit.edu;bcgsc.ca	37	4	141313503	141313503	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CLGN	NM_001130675	exon14	c.A1521G	p.K507K	GTCGGTTTTTTTA	.	243	12	264	1	.	93	C	141313503	T	C	141313503	2	2	135	1	0	0	0	0	0	0	0	1	3524	1838	64	2		2	CLGN	4	141313503	Silent	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	54670401	141313503	49840773	12	17022											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158254023	158254023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GRIA2	NM_000826	exon7	c.G935A	p.R312H	CCTTCCGCAACCT	.	118	15	121	0	.	515	A	158254023	G	A	158254023	3	1	135	1	0	0	0	0	1	0	0	0	6768	1087	38	1	961	1	GRIA2	4	158254023	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	16940520	158254023	32900253	13	17023											
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	38482266	38482266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LIFR	NM_002310	exon20	c.G2725T	p.E909X	GAACCTCAACATT	.	86	14	90	0	.	1173	A	38482266	C	A	38482266	4	1	135	1	0	0	0	0	0	1	0	0	8780	835	29	3	572	3	LIFR	5	38482266	Nonsense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		38482266	142432994	14	17024											
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	58511685	58511685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PDE4D	NM_001104631	exon2	c.G565T	p.E189X	AGGACTCCCGTCG	.	76	25	97	0	.	226	A	58511685	C	A	58511685	4	1	135	1	0	0	0	0	0	1	0	0	11642	864	30	3	1920	3	PDE4D	5	58511685	Nonsense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	20029419	58511685	122403575	15	17025											
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140736620	140736620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_018917	exon1	c.C1853T	p.A618V	TATTTGCAGTGGG	.	143	15	177	0	.	.	T	140736620	C	T	140736620	3	4	135	1	0	0	0	0	1	0	0	0	11556	710	25	3	1855	3	PCDHGA4	5	140736620	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	82224935	140736620	40178640	16	17026											
ARSI	340075	ucsc.edu;bcgsc.ca	37	5	149681722	149681722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARSI	NM_001012301	exon1	c.C215A	p.P72H	AGCGTAGGGGTCT	.	21	4	37	0	.	92	T	149681722	G	T	149681722	3	4	135	1	0	0	0	0	1	0	0	0	994	1000	35	3	1502	3	ARSI	5	149681722	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	8945102	149681722	31233538	17	17027											
NSD1	64324	broad.mit.edu;bcgsc.ca	37	5	176675231	176675231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NSD1	NM_022455	exon11	c.A4547G	p.E1516G	CTGTTGAGGAAGG	.	45	4	73	0	.	188	G	176675231	A	G	176675231	3	3	135	1	0	0	0	0	1	0	0	0	10669	304	11	2	4585	2	NSD1	5	176675231	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	26993509	176675231	4240029	18	17028											
NEU1	4758	broad.mit.edu;ucsc.edu	37	6	31829947	31829947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEU1	NM_000434	exon2	c.G181A	p.E61K	GTTGCTCCATGGT	.	42	3	65	0	.	91	T	31829947	C	T	31829947	3	4	135	1	0	0	0	0	1	0	0	0	10341	864	30	3	1086	3	NEU1	6	31829947	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		31829947	139285120	19	17029											
CFB	629	broad.mit.edu;bcgsc.ca	37	6	31917266	31917266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CFB	NM_001710	exon10	c.A1340G	p.D447G	AGAAAGACAATGA	.	75	5	101	0	.	91	G	31917266	A	G	31917266	3	3	135	1	0	0	0	0	1	0	0	0	3278	275	10	2	1378	2	CFB	6	31917266	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	87319	31917266	139197801	20	17030											
BMP5	653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	55620459	55620459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BMP5	NM_021073	exon7	c.C1237G	p.H413D	GTACGTGGTCAGG	.	266	20	242	0	.	516	C	55620459	G	C	55620459	3	2	135	1	0	0	0	0	1	0	0	0	1463	1348	47	4	131	4	BMP5	6	55620459	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	23703193	55620459	115494608	21	17031											
SASH1	23328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	148835544	148835544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SASH1	NM_015278	exon9	c.A814G	p.R272G	AGAGTCAGAAAGA	.	38	5	42	0	.	90	G	148835544	A	G	148835544	3	3	135	1	0	0	0	0	1	0	0	0	13848	180	7	2	848	2	SASH1	6	148835544	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	93215085	148835544	22279523	22	17032											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu	37	6	152644792	152644792	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	SYNE1_ENST00000265368,NS,carcinoma,0	SYNE1	NM_182961	exon82	c.G15738A	p.E5246E	TAAGAGCTCTGCT	.	69	4	86	0	.	607	T	152644792	C	T	152644792	2	4	135	1	0	0	0	0	0	0	0	1	15442	796	28	3		3	SYNE1	6	152644792	Silent	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	3809248	152644792	18470275	23	17033											
CCDC132	55610	broad.mit.edu;bcgsc.ca	37	7	92935295	92935295	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CCDC132	NM_017667	exon18	c.A1608G	p.E536E	AACAGAAGATGTC	.	71	4	83	0	.	90	G	92935295	A	G	92935295	2	3	135	1	0	0	0	0	0	0	0	1	2767	69	3	2		2	CCDC132	7	92935295	Silent	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10		92935295	66203368	24	17034											
MRPS28	28957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80942420	80942420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MRPS28	NM_014018	exon1	c.T64C	p.F22L	TGAAGAAGAGAAA	.	36	4	43	0	.	90	G	80942420	A	G	80942420	3	3	135	1	0	0	0	0	1	0	0	0	9839	72	3	2	511	2	MRPS28	8	80942420	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10		80942420	65421602	25	17035											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	81412242	81412243	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZBTB10	NM_023929	exon2	c.1486_1487insA	p.Q496fs	CGGGATCAAAAAA	.	90	25	72	0	.	522	A	81412243	-	A	81412242	7	5	135	1	0	1	1	0	0	0	0	0	17520	827	29	0	1492	0	ZBTB10	8	81412242	Frame_Shift_Ins	INS	-	TCGA-FV-A3R3-01A-11D-A22F-10	469822	81412242	64951780	26	17036											
ATAD2	29028	broad.mit.edu;bcgsc.ca	37	8	124382254	124382254	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ATAD2	NM_014109	exon7	c.A738G	p.E246E	ACCCTCTTCAGAT	.	89	5	118	0	.	92	C	124382254	T	C	124382254	2	2	135	1	0	0	0	0	0	0	0	1	1071	1606	56	2		2	ATAD2	8	124382254	Silent	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	42970012	124382254	21981768	27	17037											
LPPR1	0	broad.mit.edu;bcgsc.ca	37	9	104071698	104071698	+	Silent	SNP	C	C	A	rs145402155	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_207299	exon5	c.C591A	p.P197P	CTTTCCCTCCAAA	.	48	4	63	0	C|1.000;T|0.000	.	A	104071698	C	A	104071698	2	1	135	1	0	0	0	0	0	0	0	1	8924	668	24	3		3	LPPR1	9	104071698	Silent	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		104071698	37141733	28	17038											
C9orf84	158401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114462240	114462240	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	C9orf84	NM_173521	exon22	c.T2985C	p.D995D	CTTTACATCCAGT	.	48	13	61	0	.	92	G	114462240	A	G	114462240	2	3	135	1	0	0	0	0	0	0	0	1	2500	214	8	2		2	C9orf84	9	114462240	Silent	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	10390542	114462240	26751191	29	17039											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	117122236	117122236	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKNA	NM_030767	exon10	c.2231delT	p.L744fs	CGGGCCAGGGGGT	.	49	11	76	0	.	94	-	117122236	A	-	117122236	7	5	135	1	0	1	0	1	0	0	0	0	463	188	7	0	2140	0	AKNA	9	117122236	Frame_Shift_Del	DEL	A	TCGA-FV-A3R3-01A-11D-A22F-10	2659996	117122236	24091195	30	17040											
FPGS	2356	ucsc.edu;bcgsc.ca	37	9	130569924	130569924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FPGS	NM_004957	exon8	c.A701G	p.D234G	TGGGGGATACGGT	.	37	4	51	0	.	90	G	130569924	A	G	130569924	3	3	135	1	0	0	0	0	1	0	0	0	6036	333	12	2	731	2	FPGS	9	130569924	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	13447688	130569924	10643507	31	17041											
PTGES	9536	broad.mit.edu;mdanderson.org	37	9	132502105	132502105	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTGES	NM_004878	exon3	c.T244A	p.F82I	AAAGGAAGGGGTA	.	47	7	78	0	.	226	T	132502105	A	T	132502105	3	4	135	1	0	0	0	0	1	0	0	0	12746	72	3	4	218	4	PTGES	9	132502105	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	1932181	132502105	8711326	32	17042											
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137326002	137326002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	RXRA,NS,carcinoma,0	RXRA	NM_002957	exon9	c.A1190G	p.Y397C	AGGTCTATGCGTC	.	15	5	30	0	.	188	G	137326002	A	G	137326002	3	3	135	1	0	0	0	0	1	0	0	0	13763	449	16	2	1224	2	RXRA	9	137326002	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	4823897	137326002	3887429	33	17043											
COL5A1	1289	broad.mit.edu;bcgsc.ca	37	9	137674544	137674544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COL5A1	NM_000093	exon29	c.A2462G	p.D821G	AAGGAGACATGGG	.	78	4	102	0	.	524	G	137674544	A	G	137674544	3	3	135	1	0	0	0	0	1	0	0	0	3696	275	10	2	2576	2	COL5A1	9	137674544	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	348542	137674544	3538887	34	17044											
ELOVL3	83401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103988605	103988605	+	Missense_Mutation	SNP	C	C	T	rs150611171	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ELOVL3	NM_152310	exon4	c.C409T	p.R137C	ATCCTGCGTAAGC	.	98	16	115	1	C|0.999;T|0.001	92	T	103988605	C	T	103988605	3	4	135	1	0	0	0	0	1	0	0	0	5075	768	27	1	423	1	ELOVL3	10	103988605	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		103988605	31546142	35	17045											
KRT83	3889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52712959	52712959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KRT83	NM_002282	exon2	c.C574A	p.L192M	CCTCCAGCACCTC	.	121	31	142	0	.	91	T	52712959	G	T	52712959	3	4	135	1	0	0	0	0	1	0	0	0	8497	962	34	3	939	3	KRT83	12	52712959	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10		52712959	81138936	36	17046											
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56720646	56720646	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PAN2	NM_014871	exon7	c.A1017G	p.S339S	GCTGGCTGACACA	.	38	4	33	0	.	702	C	56720646	T	C	56720646	2	2	135	1	0	0	0	0	0	0	0	1	11414	1567	55	2		2	PAN2	12	56720646	Silent	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	4007687	56720646	77131249	37	17047											
CRY1	1407	broad.mit.edu;bcgsc.ca	37	12	107486610	107486610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CRY1	NM_004075	exon1	c.T130C	p.S44P	TGGAGGAGCCGGC	.	75	6	82	0	.	93	G	107486610	A	G	107486610	3	3	135	1	0	0	0	0	1	0	0	0	3903	304	11	2	1678	2	CRY1	12	107486610	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	50765964	107486610	26365285	38	17048											
DHX37	57647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125455935	125455935	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX37	NM_032656	exon8	c.G1104C	p.V368V	GATCACCACCTTG	.	34	5	45	0	.	227	G	125455935	C	G	125455935	2	3	135	1	0	0	0	0	0	0	0	1	4510	581	21	4		4	DHX37	12	125455935	Silent	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	17969325	125455935	8395960	39	17049											
THSD1	55901	broad.mit.edu;bcgsc.ca	37	13	52972291	52972300	+	Frame_Shift_Del	DEL	CTGGCTCTCT	CTGGCTCTCT	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	CTGGCTCTCT	CTGGCTCTCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	THSD1	NM_018676	exon3	c.88_97del	p.30_33del	CATGGCCTGGCTC	.	58	10	73	0	.	94	-	52972300	CTGGCTCTCT	-	52972291	7	5	135	1	0	1	0	1	0	0	0	0	15874	681	24	0	2473	0	THSD1	13	52972291	Frame_Shift_Del	DEL	CTGGCTCTCT	TCGA-FV-A3R3-01A-11D-A22F-10		52972291	62197587	40	17050											
TM9SF2	9375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100206607	100206607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TM9SF2	NM_004800	exon14	c.A1538G	p.E513G	TTCCTGAACAGTC	.	145	24	167	0	.	91	G	100206607	A	G	100206607	3	3	135	1	0	0	0	0	1	0	0	0	15975	246	9	2	1592	2	TM9SF2	13	100206607	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	47234316	100206607	14963271	41	17051											
PSMB5	5693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23502649	23502649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PSMB5	NM_001144932	exon2	c.A433G	p.M145V	ACACCATGTTGGC	.	44	4	56	0	.	91	C	23502649	T	C	23502649	3	2	135	1	0	0	0	0	1	0	0	0	12680	1464	51	2	455	2	PSMB5	14	23502649	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10		23502649	83846891	42	17052											
BAZ1A	11177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35231121	35231121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BAZ1A	NM_013448	exon24	c.A4085G	p.K1362R	GCACTTTTCCTGC	.	328	36	365	1	.	291	C	35231121	T	C	35231121	3	2	135	1	0	0	0	0	1	0	0	0	1329	1841	64	2	601	2	BAZ1A	14	35231121	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	11728472	35231121	72118419	43	17053											
COQ6	51004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74422552	74422552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COQ6	NM_182476	exon4	c.T402G	p.D134E	TAAGGATAATTTA	.	91	17	122	0	.	90	G	74422552	T	G	74422552	3	3	135	1	0	0	0	0	1	0	0	0	3749	1403	49	5	416	5	COQ6	14	74422552	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	39191431	74422552	32926988	44	17054											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62182512	62182512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	VPS13C	NM_020821	exon67	c.A9193G	p.T3065A	CATCGGTGAAAAG	.	70	16	112	0	.	92	C	62182512	T	C	62182512	3	2	135	1	0	0	0	0	1	0	0	0	17188	1696	59	2	2172	2	VPS13C	15	62182512	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10		62182512	40348880	45	17055											
DENND4A	10260	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65962395	65962395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DENND4A	NM_001144823	exon26	c.A4593T	p.L1531F	AAAGGGTAAGAAG	.	89	9	103	1	.	229	A	65962395	T	A	65962395	3	1	135	1	0	0	0	0	1	0	0	0	4433	1635	57	4	1159	4	DENND4A	15	65962395	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	3779883	65962395	36568997	46	17056											
FSD2	123722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83451591	83451591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FSD2	NM_001007122	exon4	c.A922G	p.T308A	CTATTGTTTCCAT	.	220	24	286	0	.	90	C	83451591	T	C	83451591	3	2	135	1	0	0	0	0	1	0	0	0	6071	1725	60	2	1367	2	FSD2	15	83451591	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	17489196	83451591	19079801	47	17057											
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86265519	86265519	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKAP13	NM_006738	exon25	c.T6449G	p.V2150G	TGCTTGTAACTCA	.	138	14	136	0	.	258	G	86265519	T	G	86265519	3	3	135	1	0	0	0	0	1	0	0	0	449	1638	57	5	6601	5	AKAP13	15	86265519	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	2813928	86265519	16265873	48	17058											
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	24902218	24902218	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SLC5A11	NM_052944	exon9	c.A693G	p.G231G	GGAAGGACTGAAG	.	61	12	84	0	.	92	G	24902218	A	G	24902218	2	3	135	1	0	0	0	0	0	0	0	1	14663	262	10	2		2	SLC5A11	16	24902218	Silent	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10		24902218	65452535	49	17059											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7400976	7400976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	POLR2A	NM_000937	exon7	c.A989T	p.Q330L	CCATGCAGAAGTC	.	73	20	89	0	.	91	T	7400976	A	T	7400976	3	4	135	1	0	0	0	0	1	0	0	0	12214	188	7	4	1015	4	POLR2A	17	7400976	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10		7400976	73794234	50	17060											
NPC1	4864	broad.mit.edu;bcgsc.ca	37	18	21140425	21140425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NPC1	NM_000271	exon6	c.G651A	p.M217I	GGGCTCCATCCCA	.	83	5	83	0	.	92	T	21140425	C	T	21140425	3	4	135	1	0	0	0	0	1	0	0	0	10570	594	21	3	3265	3	NPC1	18	21140425	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		21140425	56936823	51	17061											
DAZAP1	26528	broad.mit.edu;mdanderson.org	37	19	1434862	1434862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DAZAP1	NM_018959	exon12	c.G1175A	p.G392E	GCTTTGGACGAGG	.	24	10	23	0	.	153	A	1434862	G	A	1434862	3	1	135	1	0	0	0	0	1	0	0	0	4244	1174	41	3	1314	3	DAZAP1	19	1434862	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10		1434862	57694121	52	17062											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060181	9060181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC16	NM_024690	exon3	c.A27265C	p.T9089P	TTGATGTAGCCCC	.	108	14	111	0	.	566	G	9060181	T	G	9060181	3	3	135	1	0	0	0	0	1	0	0	0	9973	1638	57	5	16586	5	MUC16	19	9060181	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	7625319	9060181	50068802	53	17063											
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38028241	38028241	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF793	NM_001013659	exon8	c.C681T	p.H227H	ACCCCACGTCTGT	.	72	15	59	0	.	68	T	38028241	C	T	38028241	2	4	135	1	0	0	0	0	0	0	0	1	18162	535	19	1		1	ZNF793	19	38028241	Silent	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	28968060	38028241	21100742	54	17064											
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189048	38189048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF607	NM_032689	exon5	c.A1984T	p.I662L	GATGTATACTAAG	.	120	22	123	0	.	90	A	38189048	T	A	38189048	3	1	135	1	0	0	0	0	1	0	0	0	18030	1406	49	4	110	4	ZNF607	19	38189048	Missense_Mutation	SNP	T	TCGA-FV-A3R3-01A-11D-A22F-10	160807	38189048	20939935	55	17065											
XRCC1	7515	ucsc.edu;bcgsc.ca	37	19	44055801	44055801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	XRCC1	NM_006297	exon10	c.T1121C	p.L374P	AGGCCTAGGACCT	.	32	4	38	0	.	912	G	44055801	A	G	44055801	3	3	135	1	0	0	0	0	1	0	0	0	17449	420	15	2	812	2	XRCC1	19	44055801	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	5866753	44055801	15073182	56	17066											
SULT2B1	6820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49090570	49090570	+	Missense_Mutation	SNP	G	G	A	rs138292714	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SULT2B1	NM_177973	exon3	c.G299A	p.R100Q	GGGAGCGGGCACC	.	53	8	45	0	G|1.000;A|0.000	91	A	49090570	G	A	49090570	3	1	135	1	0	0	0	0	1	0	0	0	15379	1116	39	1	335	1	SULT2B1	19	49090570	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	5034769	49090570	10038413	57	17067											
ASXL1	171023	bcgsc.ca;mdanderson.org	37	20	31017824	31017824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ASXL1	NM_015338	exon7	c.C686A	p.P229Q	CTGCCCCGCTCCT	.	15	3	24	0	.	2057	A	31017824	C	A	31017824	3	1	135	1	0	0	0	0	1	0	0	0	1066	652	23	1	722	1	ASXL1	20	31017824	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10		31017824	32007696	58	17068											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34761813	34761813	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EPB41L1	NM_001258329	exon3	c.C114A	p.G38G	CCACGGCCACCCA	.	71	17	81	0	.	93	A	34761813	C	A	34761813	2	1	135	1	0	0	0	0	0	0	0	1	5152	726	26	3		3	EPB41L1	20	34761813	Silent	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	3743989	34761813	28263707	59	17069											
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	37621023	37621023	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX35	NM_021931	exon7	c.C537T	p.H179H	AGCCCACGAGAGG	.	130	11	138	0	.	226	T	37621023	C	T	37621023	2	4	135	1	0	0	0	0	0	0	0	1	4508	535	19	1		1	DHX35	20	37621023	Silent	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	2859210	37621023	25404497	60	17070											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56139383	56139383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCK1	NM_002591	exon7	c.G1120A	p.D374N	GGCATTGATGAGC	.	94	16	131	0	.	227	A	56139383	G	A	56139383	3	1	135	1	0	0	0	0	1	0	0	0	11581	1290	45	3	1142	3	PCK1	20	56139383	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	18518360	56139383	6886137	61	17071	92	2									
PCK1	5105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56139386	56139386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCK1	NM_002591	exon7	c.G1123A	p.E375K	ATTGATGAGCCGC	.	93	16	134	1	.	227	A	56139386	G	A	56139386	3	1	135	1	0	0	0	0	1	0	0	0	11581	1291	45	3	1145	3	PCK1	20	56139386	Missense_Mutation	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10	3	56139386	6886134	62	17072	92	2									
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	95	28	97	0	C|1.000	4767	T	57484420	C	T	57484420	3	4	135	1	0	0	0	0	1	0	0	0	6510	652	23	1	3448	1	GNAS	20	57484420	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	1345034	57484420	5541100	63	17073											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511712	61511712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DIDO1	NM_001193369	exon16	c.G5596A	p.A1866T	CGGGGGCGCCCGT	.	53	9	50	0	.	96	T	61511712	C	T	61511712	3	4	135	1	0	0	0	0	1	0	0	0	4522	768	27	1	1130	1	DIDO1	20	61511712	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	4027292	61511712	1513808	64	17074											
MYH9	4627	broad.mit.edu;bcgsc.ca	37	22	36737554	36737554	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MYH9	NM_002473	exon3	c.C351T	p.F117F	CACACAGAACAGG	.	73	4	77	0	.	292	A	36737554	G	A	36737554	2	1	135	1	0	0	0	0	0	0	0	1	10042	933	33	3		3	MYH9	22	36737554	Silent	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10		36737554	14567012	65	17075											
EP300	2033	broad.mit.edu;bcgsc.ca	37	22	41569690	41569690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EP300	NM_001429	exon29	c.A4681G	p.S1561G	AATAAGAGCAGCC	.	121	6	170	0	.	2011	G	41569690	A	G	41569690	3	3	135	1	0	0	0	0	1	0	0	0	5148	304	11	2	4795	2	EP300	22	41569690	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	4832136	41569690	9734876	66	17076											
TTLL12	23170	ucsc.edu;bcgsc.ca	37	22	43564888	43564888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TTLL12	NM_015140	exon13	c.T1675C	p.F559L	CCTGGAACAGCTC	.	25	4	29	0	.	90	G	43564888	A	G	43564888	3	3	135	1	0	0	0	0	1	0	0	0	16722	43	2	2	267	2	TTLL12	22	43564888	Missense_Mutation	SNP	A	TCGA-FV-A3R3-01A-11D-A22F-10	1995198	43564888	7739678	67	17077											
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	57936066	57936066	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZXDA	NM_007156	exon1	c.C789T	p.G263G	CACCACGCCTGGA	.	36	11	36	0	.	131	A	57936066	G	A	57936066	2	1	135	1	0	0	0	0	0	0	0	1	18247	1074	38	1		1	ZXDA	23	57936066	Silent	SNP	G	TCGA-FV-A3R3-01A-11D-A22F-10		57936066	97334494	68	17078											
MID2	11043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	107084301	107084301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MID2	NM_012216	exon2	c.C406T	p.R136X	AGCGAGCGAATTG	.	75	12	90	0	.	227	T	107084301	C	T	107084301	4	4	135	1	0	0	0	0	0	1	0	0	9578	760	27	1	412	1	MID2	23	107084301	Nonsense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	49148235	107084301	48186259	69	17079											
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109444278	109444278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AMMECR1	NM_015365	exon5	c.G791A	p.G264E	TCCCATCCTGTAG	.	72	10	97	0	.	130	T	109444278	C	T	109444278	3	4	135	1	0	0	0	0	1	0	0	0	578	869	30	3	218	3	AMMECR1	23	109444278	Missense_Mutation	SNP	C	TCGA-FV-A3R3-01A-11D-A22F-10	2359977	109444278	45826282	70	17080											
TAS1R1	80835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6635364	6635364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TAS1R1	NM_138697	exon3	c.G1172A	p.R391Q	CATACCGGGCTGT	.	104	30	117	1	.	516	A	6635364	G	A	6635364	3	1	136	1	0	0	0	0	1	0	0	0	15559	1116	39	1	1182	1	TAS1R1	1	6635364	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		6635364	242615257	1	17081											
CAPZB	832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19746233	19746233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CAPZB	NM_004930	exon2	c.G15C	p.Q5H	GTCCAGCTGCTGA	.	95	5	90	0	.	90	G	19746233	C	G	19746233	3	3	136	1	0	0	0	0	1	0	0	0	2643	796	28	4	835	4	CAPZB	1	19746233	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	13110869	19746233	229504388	2	17082											
USP1	7398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	62913095	62913095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	USP1	NM_001017415	exon7	c.A1333G	p.S445G	TGTGAAAGTTTAA	.	103	9	94	0	.	659	G	62913095	A	G	62913095	3	3	136	1	0	0	0	0	1	0	0	0	17037	72	3	2	1355	2	USP1	1	62913095	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	43166862	62913095	186337526	3	17083											
LEPR	3953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	66102511	66102511	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LEPR	NM_002303	exon20	c.T3311A	p.F1104Y	GCCCATTCCCAGC	.	135	7	157	0	.	91	A	66102511	T	A	66102511	3	1	136	1	0	0	0	0	1	0	0	0	8728	1783	62	4	3611	4	LEPR	1	66102511	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	3189416	66102511	183148110	4	17084											
TET3	200424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74275063	74275063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_144993	exon1	c.G1614C	p.R538S	CTCCAGGGACAGC	.	135	7	101	0	.	.	C	74275063	G	C	74275063	3	2	136	1	0	0	0	0	1	0	0	0	15768	1223	43	4	1616	4	TET3	2	74275063	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		74275063	168924310	5	17085											
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	122216520	122216520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CLASP1	NM_001207051	exon13	c.G1210A	p.D404N	CATGGTCAAACTT	.	103	22	61	0	.	91	T	122216520	C	T	122216520	3	4	136	1	0	0	0	0	1	0	0	0	3454	826	29	3	3570	3	CLASP1	2	122216520	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	47941457	122216520	120982853	6	17086											
ARL5A	26225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152670806	152670806	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARL5A	NM_012097	exon3	c.A132G	p.T44T	AGGAGATGTATGT	.	196	48	195	0	.	227	C	152670806	T	C	152670806	2	2	136	1	0	0	0	0	0	0	0	1	939	1451	51	2		2	ARL5A	2	152670806	Silent	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	30454286	152670806	90528567	7	17087											
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	201399836	201399838	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SGOL2	NM_001160046	exon3	c.251_253del	p.84_85del	TGCAAAAAGAAGT	.	81	16	40	0	.	94	-	201399838	AAG	-	201399836	7	5	136	1	0	1	0	1	0	0	0	0	14217	14	1	0	257	0	SGOL2	2	201399836	In_Frame_Del	DEL	AAG	TCGA-FV-A495-01A-11D-A25V-10	48729030	201399836	41799537	8	17088											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882436	228882436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SPHKAP	NM_030623	exon7	c.A3134C	p.K1045T	ATGATCTTGGCTG	.	98	24	84	0	.	167	G	228882436	T	G	228882436	3	3	136	1	0	0	0	0	1	0	0	0	15047	1609	56	5	1992	5	SPHKAP	2	228882436	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	27482600	228882436	14316937	9	17089											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238245049	238245049	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	COL6A3	NM_004369	exon40	c.T8694C	p.T2898T	TATAATAGTCACA	.	123	23	86	0	.	526	G	238245049	A	G	238245049	2	3	136	1	0	0	0	0	0	0	0	1	3701	407	15	2		2	COL6A3	2	238245049	Silent	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	9362613	238245049	4954324	10	17090											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	4693825	4693829	+	Frame_Shift_Del	DEL	TGTCG	TGTCG	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	TGTCG	TGTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ITPR1	NM_001099952	exon11	c.874_878del	p.292_293del	GACCCATGTCGGG	.	158	35	118	0	.	710	-	4693829	TGTCG	-	4693825	7	5	136	1	0	1	0	1	0	0	0	0	7920	1464	51	0	908	0	ITPR1	3	4693825	Frame_Shift_Del	DEL	TGTCG	TCGA-FV-A495-01A-11D-A25V-10		4693825	193328605	11	17091											
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645342	38645342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCN5A	NM_001160160	exon12	c.G1751A	p.G584D	GCGTGGCCAGGAG	.	64	13	48	0	.	98	T	38645342	C	T	38645342	3	4	136	1	0	0	0	0	1	0	0	0	13922	739	26	3	4367	3	SCN5A	3	38645342	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	33951517	38645342	159377088	12	17092											
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52863215	52863215	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ITIH4	NM_001166449	exon2	c.G171A	p.V57V	ATTGACCACTCGG	.	127	37	105	0	.	46	T	52863215	C	T	52863215	2	4	136	1	0	0	0	0	0	0	0	1	7906	581	21	3		3	ITIH4	3	52863215	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	14217873	52863215	145159215	13	17093											
ARHGEF3	50650	broad.mit.edu;ucsc.edu	37	3	56835759	56835759	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARHGEF3	NM_019555	exon1	c.C68G	p.P23R	CTGGCCGGGGGTA	.	81	12	89	1	.	228	C	56835759	G	C	56835759	3	2	136	1	0	0	0	0	1	0	0	0	904	1116	39	4	1670	4	ARHGEF3	3	56835759	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	3972544	56835759	141186671	14	17094											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108147461	108147461	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MYH15	NM_014981	exon28	c.G3640C	p.E1214Q	CGAGCTCAGCCAG	.	297	12	228	0	.	73	G	108147461	C	G	108147461	3	3	136	1	0	0	0	0	1	0	0	0	10034	835	29	4	2260	4	MYH15	3	108147461	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	51311702	108147461	89874969	15	17095											
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147128637	147128637	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZIC1	NM_003412	exon1	c.C738T	p.F246F	AACTTTCAGCACC	.	184	46	153	0	.	91	T	147128637	C	T	147128637	2	4	136	1	0	0	0	0	0	0	0	1	17675	825	29	3		3	ZIC1	3	147128637	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	38981176	147128637	50893793	16	17096											
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156266720	156266720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SSR3	NM_007107	exon3	c.G333T	p.K111N	AGACATCTTTCTA	.	71	19	60	0	.	90	A	156266720	C	A	156266720	3	1	136	1	0	0	0	0	1	0	0	0	15191	912	32	3	236	3	SSR3	3	156266720	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	9138083	156266720	41755710	17	17097											
SCHIP1	29970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158991644	158991644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCHIP1	NM_014575	exon1	c.A35T	p.D12V	CGTGGGACTGTGA	.	121	33	103	1	.	92	T	158991644	A	T	158991644	3	4	136	1	0	0	0	0	1	0	0	0	13904	275	10	4	37	4	SCHIP1	3	158991644	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	2724924	158991644	39030786	18	17098											
ZNF141	7700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	366775	366775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF141	NM_003441	exon4	c.T549A	p.F183L	GAAGTTTTCACAC	.	85	20	64	0	.	90	A	366775	T	A	366775	3	1	136	1	0	0	0	0	1	0	0	0	17727	1838	64	4	563	4	ZNF141	4	366775	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10		366775	190787501	19	17099											
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5633629	5633629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	EVC2	NM_147127	exon11	c.G1601A	p.R534K	TCATTTCTCTGGA	.	73	12	71	0	.	155	T	5633629	C	T	5633629	3	4	136	1	0	0	0	0	1	0	0	0	5286	913	32	3	2373	3	EVC2	4	5633629	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	5266854	5633629	185520647	20	17100											
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	27024472	27024472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	STIM2	NM_001169118	exon13	c.T2119G	p.S707A	TCATGTTCCTCAG	.	118	23	103	0	.	91	G	27024472	T	G	27024472	3	3	136	1	0	0	0	0	1	0	0	0	15283	1783	62	5	2210	5	STIM2	4	27024472	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	21390843	27024472	164129804	21	17101											
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42553255	42553255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ATP8A1	NM_006095	exon18	c.T1562C	p.V521A	GTGAAAACAAAAT	.	152	41	147	0	.	92	G	42553255	A	G	42553255	3	3	136	1	0	0	0	0	1	0	0	0	1192	43	2	2	2012	2	ATP8A1	4	42553255	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	15528783	42553255	148601021	22	17102											
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70360887	70360889	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	UGT2B4	NM_021139	exon1	c.691_693del	p.231_231del	ATCCCACTTCTTC	.	99	15	105	0	.	92	-	70360889	CTT	-	70360887	7	5	136	1	0	1	0	1	0	0	0	0	16958	564	20	0	917	0	UGT2B4	4	70360887	In_Frame_Del	DEL	CTT	TCGA-FV-A495-01A-11D-A25V-10	27807632	70360887	120793389	23	17103											
ANP32C	23520	ucsc.edu;mdanderson.org	37	4	165118830	165118830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ANP32C	NM_012403	exon1	c.C34T	p.R12W	TGTTCCGCAGCTC	.	113	37	99	2	.	90	A	165118830	G	A	165118830	3	1	136	1	0	0	0	0	1	0	0	0	707	1086	38	1	673	1	ANP32C	4	165118830	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	94757943	165118830	26035446	24	17104											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13820597	13820597	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DNAH5	NM_001369	exon41	c.T6699C	p.A2233A	TAAACCAGCTTCT	.	116	26	76	0	.	182	G	13820597	A	G	13820597	2	3	136	1	0	0	0	0	0	0	0	1	4604	175	7	2		2	DNAH5	5	13820597	Silent	SNP	A	TCGA-FV-A495-01A-11D-A25V-10		13820597	167094663	25	17105											
PRDM9	56979	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	23527194	23527194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PRDM9	NM_020227	exon11	c.G1997A	p.C666Y	ATGTCTGCAGGGA	.	190	28	122	0	.	139	A	23527194	G	A	23527194	3	1	136	1	0	0	0	0	1	0	0	0	12463	1319	46	3	2035	3	PRDM9	5	23527194	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	9706597	23527194	157388066	26	17106											
BRIX1	55299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34925045	34925045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BRIX1	NM_018321	exon9	c.T757G	p.L253V	CCAACTTTATATG	.	33	7	24	0	.	90	G	34925045	T	G	34925045	3	3	136	1	0	0	0	0	1	0	0	0	1515	1838	64	5	791	5	BRIX1	5	34925045	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	11397851	34925045	145990215	27	17107											
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	102433403	102433403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GIN1	NM_017676	exon5	c.G722A	p.S241N	GGTGTACTTTCCG	.	127	7	91	0	.	92	T	102433403	C	T	102433403	3	4	136	1	0	0	0	0	1	0	0	0	6386	565	20	3	862	3	GIN1	5	102433403	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	67508358	102433403	78481857	28	17108											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	127686699	127686699	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FBN2	NM_001999	exon22	c.2675-2A>G	.	GCTGTCTGAAAAG	.	94	6	51	0	.	146	C	127686699	T	C	127686699	5	2	136	1	0	0	0	0	0	0	1	0	5703	1594	55	2	6245	2	FBN2	5	127686699	Splice_Site	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	25253296	127686699	53228561	29	17109											
SLC27A6	28965	broad.mit.edu;bcgsc.ca	37	5	128365345	128365345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC27A6	NM_001017372	exon9	c.A1628G	p.E543G	TTTATGAACAAGT	.	102	5	70	1	.	90	G	128365345	A	G	128365345	3	3	136	1	0	0	0	0	1	0	0	0	14530	246	9	2	1662	2	SLC27A6	5	128365345	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	678646	128365345	52549915	30	17110											
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140203594	140203594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDHA5	NM_018908	exon1	c.G2234T	p.G745V	CGGTGGGGAGCTG	.	129	16	88	0	.	137	T	140203594	G	T	140203594	3	4	136	1	0	0	0	0	1	0	0	0	11527	1232	43	3	2236	3	PCDHA5	5	140203594	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	11838249	140203594	40711666	31	17111											
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140307840	140307840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDHAC1	NM_031882	exon1	c.G1363C	p.A455P	TTCGTTGCTGAAA	.	57	6	34	0	.	28	C	140307840	G	C	140307840	3	2	136	1	0	0	0	0	1	0	0	0	11532	1319	46	4	1365	4	PCDHAC1	5	140307840	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	104246	140307840	40607420	32	17112											
ADRB2	154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148207094	148207094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ADRB2	NM_000024	exon1	c.G700C	p.D234H	AAGATTGACAAAT	.	106	40	80	0	.	523	C	148207094	G	C	148207094	3	2	136	1	0	0	0	0	1	0	0	0	341	1290	45	4	702	4	ADRB2	5	148207094	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	7899254	148207094	32708166	33	17113											
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150948274	150948274	+	Silent	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FAT2	NM_001447	exon1	c.C219A	p.I73I	AGAGATGATCCGG	.	212	45	159	1	.	96	T	150948274	G	T	150948274	2	4	136	1	0	0	0	0	0	0	0	1	5690	1280	45	3		3	FAT2	5	150948274	Silent	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	2741180	150948274	29966986	34	17114											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	153085452	153085460	+	In_Frame_Del	DEL	GTGAGTGTT	GTGAGTGTT	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	GTGAGTGTT	GTGAGTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GRIA1	NM_001258021	exon11	c.1678_1686del	p.560_562del	ATTGGAGTGAGTG	.	379	34	271	0	.	96	-	153085460	GTGAGTGTT	-	153085452	7	5	136	1	0	1	0	1	0	0	0	0	6767	1029	36	0	1690	0	GRIA1	5	153085452	In_Frame_Del	DEL	GTGAGTGTT	TCGA-FV-A495-01A-11D-A25V-10	2137178	153085452	27829808	35	17115											
DOK3	79930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176931755	176931755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DOK3	NM_024872	exon5	c.G802A	p.G268S	CGGAGCCGAACTT	.	135	28	101	0	.	226	T	176931755	C	T	176931755	3	4	136	1	0	0	0	0	1	0	0	0	4698	652	23	1	1048	1	DOK3	5	176931755	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	23846303	176931755	3983505	36	17116											
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27220730	27220730	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PRSS16	NM_005865	exon9	c.1150+2T>C	.	CTTCTGTAAGTGA	.	166	12	133	0	.	94	C	27220730	T	C	27220730	5	2	136	1	0	0	0	0	0	0	1	0	12616	1652	57	2	1186	2	PRSS16	6	27220730	Splice_Site	SNP	T	TCGA-FV-A495-01A-11D-A25V-10		27220730	143894337	37	17117											
MICA	100507436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31378413	31378413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001177519	exon2	c.C164T	p.P55L	GTCAGCCCTTCCT	.	235	56	217	0	.	.	T	31378413	C	T	31378413	3	4	136	1	0	0	0	0	1	0	0	0	9568	623	22	3	170	3	MICA	6	31378413	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	4157683	31378413	139736654	38	17118											
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39285579	39285579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KCNK16	NM_001135106	exon3	c.C478A	p.R160S	TGGGACGGTCCTC	.	103	30	66	0	.	229	T	39285579	G	T	39285579	3	4	136	1	0	0	0	0	1	0	0	0	8063	1116	39	1	852	1	KCNK16	6	39285579	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	7907166	39285579	131829488	39	17119											
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43480544	43480544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	YIPF3	NM_015388	exon7	c.C735G	p.F245L	GAGGTAGAAGAGG	.	190	37	155	0	.	90	C	43480544	G	C	43480544	3	2	136	1	0	0	0	0	1	0	0	0	17476	933	33	4	329	4	YIPF3	6	43480544	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	4194965	43480544	127634523	40	17120											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	121625734	121625734	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	C6orf170	NM_152730	exon7	c.T807C	p.N269N	AATATGATTTTCC	.	60	10	76	0	.	92	G	121625734	A	G	121625734	2	3	136	1	0	0	0	0	0	0	0	1	2344	330	12	2		2	C6orf170	6	121625734	Silent	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	78145190	121625734	49489333	41	17121											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138640960	138640960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KIAA1244	NM_020340	exon28	c.C4595T	p.A1532V	AGCACGCTATTGG	.	182	61	168	0	.	228	T	138640960	C	T	138640960	3	4	136	1	0	0	0	0	1	0	0	0	8217	797	28	3	4705	3	KIAA1244	6	138640960	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	17015226	138640960	32474107	42	17122											
OPRM1	4988	broad.mit.edu;bcgsc.ca	37	6	154360342	154360342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	OPRM1	NM_001145279	exon2	c.A47T	p.D16V	CCTTGGATCGCTT	.	142	10	111	1	.	69	T	154360342	A	T	154360342	3	4	136	1	0	0	0	0	1	0	0	0	10887	333	12	4	100	4	OPRM1	6	154360342	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	15719382	154360342	16754725	43	17123											
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6194392	6194392	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	USP42	NM_032172	exon15	c.C3207T	p.Y1069Y	CCTGTACGCTGCC	.	14	4	21	0	.	659	T	6194392	C	T	6194392	2	4	136	1	0	0	0	0	0	0	0	1	17070	547	19	1		1	USP42	7	6194392	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10		6194392	152944271	44	17124											
TARP	0	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	38305036	38305036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001003806	exon2	c.T59C	p.L20P	TTGTCCAGTGACT	.	240	65	181	0	.	.	G	38305036	A	G	38305036	3	3	136	1	0	0	0	0	1	0	0	0	15555	188	7	2	288	2	TARP	7	38305036	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	32110644	38305036	120833627	45	17125											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42262748	42262748	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GLI3	NM_000168	exon2	c.C105T	p.A35A	GCTGGAGGCAACG	.	81	23	96	0	.	1149	A	42262748	G	A	42262748	2	1	136	1	0	0	0	0	0	0	0	1	6439	987	35	3		3	GLI3	7	42262748	Silent	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	3957712	42262748	116875915	46	17126											
CUX1	1523	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	101877505	101877505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CUX1	NM_001202543	exon22	c.C3640T	p.R1214W	ATGAAACGGATGG	.	35	8	41	0	.	160	T	101877505	C	T	101877505	3	4	136	1	0	0	0	0	1	0	0	0	4064	527	19	1	3760	1	CUX1	7	101877505	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	59614757	101877505	57261158	47	17127											
MLL5	55904	broad.mit.edu;mdanderson.org	37	7	104741930	104741930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MLL5	NM_018682	exon15	c.G1781A	p.R594K	AAAAGAGAGAGAA	.	12	3	9	0	.	93	A	104741930	G	A	104741930	3	1	136	1	0	0	0	0	1	0	0	0	9624	942	33	3	1835	3	MLL5	7	104741930	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	2864425	104741930	54396733	48	17128											
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	127255087	127255087	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PAX4	NM_006193	exon2	c.A183G	p.P61P	GCCCTTTGGCTCC	.	86	6	70	0	.	227	C	127255087	T	C	127255087	2	2	136	1	0	0	0	0	0	0	0	1	11481	1799	63	2		2	PAX4	7	127255087	Silent	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	22513157	127255087	31883576	49	17129											
BMP1	649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22052004	22052004	+	Silent	SNP	G	G	A	rs199778498		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BMP1	NM_001199	exon11	c.G1344A	p.S448S	TCAATCGCCCAAC	.	120	51	131	0	G|0.999;A|0.000	155	A	22052004	G	A	22052004	2	1	136	1	0	0	0	0	0	0	0	1	1456	1074	38	1		1	BMP1	8	22052004	Silent	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		22052004	124312018	50	17130											
KIF13B	23303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28950346	28950346	+	Silent	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KIF13B	NM_015254	exon37	c.G4374C	p.V1458V	TTGCGGCACGAAG	.	63	20	94	2	.	22	G	28950346	C	G	28950346	2	3	136	1	0	0	0	0	0	0	0	1	8275	697	25	4		4	KIF13B	8	28950346	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	6898342	28950346	117413676	51	17131											
ZMAT4	79698	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	40532341	40532341	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZMAT4	NM_024645	exon5	c.G459A	p.W153X	ATTAAACCAGGCT	.	128	27	104	1	.	92	T	40532341	C	T	40532341	4	4	136	1	0	0	0	0	0	1	0	0	17691	508	18	3	242	3	ZMAT4	8	40532341	Nonsense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	11581995	40532341	105831681	52	17132											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87235302	87235302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC7A13	NM_138817	exon2	c.C716T	p.P239L	CATTTGGGAATTG	.	87	22	63	0	.	90	A	87235302	G	A	87235302	3	1	136	1	0	0	0	0	1	0	0	0	14695	1232	43	3	708	3	SLC7A13	8	87235302	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	46702961	87235302	59128720	53	17133											
DECR1	1666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91031397	91031397	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DECR1	NM_001359	exon4	c.T414C	p.P138P	ACATCCTAATGTA	.	106	37	78	0	.	90	C	91031397	T	C	91031397	2	2	136	1	0	0	0	0	0	0	0	1	4382	1509	53	2		2	DECR1	8	91031397	Silent	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	3796095	91031397	55332625	54	17134											
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100994297	100994297	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RGS22	NM_015668	exon22	c.T3228C	p.I1076I	AGTTGTAATCTTC	.	95	31	83	0	.	140	G	100994297	A	G	100994297	2	3	136	1	0	0	0	0	0	0	0	1	13305	358	13	2		2	RGS22	8	100994297	Silent	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	9962900	100994297	45369725	55	17135											
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104930679	104930679	+	Silent	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RIMS2	NM_001100117	exon9	c.C2047A	p.R683R	ATACCGCGAATAC	.	121	25	121	0	.	279	A	104930679	C	A	104930679	2	1	136	1	0	0	0	0	0	0	0	1	13368	760	27	1		1	RIMS2	8	104930679	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	3936382	104930679	41433343	56	17136											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110417294	110417294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PKHD1L1	NM_177531	exon16	c.C1604T	p.P535L	CCAGCCCATGTGT	.	99	24	97	0	.	145	T	110417294	C	T	110417294	3	4	136	1	0	0	0	0	1	0	0	0	11972	594	21	3	1666	3	PKHD1L1	8	110417294	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	5486615	110417294	35946728	57	17137											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	110539189	110539189	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PKHD1L1	NM_177531	exon77	c.G12661T	p.G4221X	CTGGTTGGAAGAA	.	127	28	123	0	.	145	T	110539189	G	T	110539189	4	4	136	1	0	0	0	0	0	1	0	0	11972	1349	47	3	12967	3	PKHD1L1	8	110539189	Nonsense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	121895	110539189	35824833	58	17138											
TG	7038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133953779	133953779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TG	NM_003235	exon26	c.T5225C	p.V1742A	CACAGGTTCAAGG	.	286	78	233	1	.	145	C	133953779	T	C	133953779	3	2	136	1	0	0	0	0	1	0	0	0	15810	1725	60	2	5327	2	TG	8	133953779	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	23414590	133953779	12410243	59	17139											
PLEC	5339	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	144995161	144995161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PLEC	NM_201380	exon32	c.G9239A	p.R3080Q	AACTGCCGCAGCA	.	39	4	49	0	.	141	T	144995161	C	T	144995161	3	4	136	1	0	0	0	0	1	0	0	0	12052	652	23	1	4819	1	PLEC	8	144995161	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	11041382	144995161	1368861	60	17140											
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	84208092	84208092	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TLE1	NM_005077	exon15	c.C1429T	p.Q477X	TGATCTGGCGAGC	.	154	56	129	0	.	92	A	84208092	G	A	84208092	4	1	136	1	0	0	0	0	0	1	0	0	15935	1357	47	3	907	3	TLE1	9	84208092	Nonsense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		84208092	57005339	61	17141											
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123298712	123298712	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CDK5RAP2	NM_018249	exon7	c.A600G	p.S200S	CATCTCTGAAAGC	.	82	29	72	0	.	229	C	123298712	T	C	123298712	2	2	136	1	0	0	0	0	0	0	0	1	3146	1567	55	2		2	CDK5RAP2	9	123298712	Silent	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	39090620	123298712	17914719	62	17142											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56129002	56129002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDH15	NM_001142763	exon6	c.G367C	p.V123L	ACTGGACCTGCAC	.	76	22	89	0	.	193	G	56129002	C	G	56129002	3	3	136	1	0	0	0	0	1	0	0	0	11511	507	18	4	7275	4	PCDH15	10	56129002	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10		56129002	79405745	63	17143											
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	95161196	95161196	+	Nonsense_Mutation	SNP	G	G	A	rs199504349		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MYOF	NM_133337	exon12	c.C1096T	p.R366X	CAGCTCGGTAGAT	.	98	28	56	0	.	93	A	95161196	G	A	95161196	4	1	136	1	0	0	0	0	0	1	0	0	10089	1124	39	1	5261	1	MYOF	10	95161196	Nonsense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	39032194	95161196	40373551	64	17144											
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96084287	96084287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PLCE1	NM_016341	exon31	c.C6683A	p.A2228E	AAGGTGCAGGAAA	.	56	24	59	0	.	229	A	96084287	C	A	96084287	3	1	136	1	0	0	0	0	1	0	0	0	12034	710	25	3	7087	3	PLCE1	10	96084287	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	923091	96084287	39450460	65	17145											
PSMD13	5719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	251919	251919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PSMD13	NM_175932	exon10	c.G1024C	p.V342L	CCCCGAGTGTTGG	.	196	10	124	0	.	515	C	251919	G	C	251919	3	2	136	1	0	0	0	0	1	0	0	0	12696	1029	36	4	1145	4	PSMD13	11	251919	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		251919	134754597	66	17146											
DCHS1	8642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6655134	6655134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DCHS1	NM_003737	exon4	c.A2104G	p.T702A	CAGCTGTGCCTGG	.	125	36	107	1	.	73	C	6655134	T	C	6655134	3	2	136	1	0	0	0	0	1	0	0	0	4287	1696	59	2	7864	2	DCHS1	11	6655134	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	6403215	6655134	128351382	67	17147											
FADD	8772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049591	70049591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FADD	NM_003824	exon1	c.A26G	p.H9R	TGCTGCACTCGGT	.	56	10	53	0	.	660	G	70049591	A	G	70049591	3	3	136	1	0	0	0	0	1	0	0	0	5364	159	6	2	28	2	FADD	11	70049591	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	63394457	70049591	64956925	68	17148											
KRTAP5-7	440050	hgsc.bcm.edu;broad.mit.edu	37	11	71238736	71238762	+	In_Frame_Del	DEL	CTGCTGTTCCTCAGGCTGTGGGTCATC	CTGCTGTTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	CTGCTGTTCCTCAGGCTGTGGGTCATC	CTGCTGTTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KRTAP5-7	NM_001012503	exon1	c.390_416del	p.130_139del	GCCCTGCTGCTGT	.	183	23	160	0	.	68	-	71238762	CTGCTGTTCCTCAGGCTGTGGGTCATC	-	71238736	7	5	136	1	0	1	0	1	0	0	0	0	8566	805	28	0	392	0	KRTAP5-7	11	71238736	In_Frame_Del	DEL	CTGCTGTTCCTCAGGCTGTGGGTCATC	TCGA-FV-A495-01A-11D-A25V-10	1189145	71238736	63767780	69	17149											
GOLT1B	51026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21665265	21665265	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GOLT1B	NM_016072	exon4	c.A333T	p.R111S	TAGAAGAGTGCCA	.	89	34	54	1	.	90	T	21665265	A	T	21665265	3	4	136	1	0	0	0	0	1	0	0	0	6571	301	11	4	347	4	GOLT1B	12	21665265	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10		21665265	112186630	70	17150											
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53225247	53225247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KRT79	NM_175834	exon2	c.G641A	p.G214E	AGCCTCCCCCGCT	.	105	7	96	0	.	72	T	53225247	C	T	53225247	3	4	136	1	0	0	0	0	1	0	0	0	8492	623	22	3	998	3	KRT79	12	53225247	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	31559982	53225247	80626648	71	17151											
VEZT	55591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95676231	95676231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	VEZT	NM_017599	exon8	c.G1139T	p.G380V	CTCAAGGTCTACC	.	148	32	107	1	.	23	T	95676231	G	T	95676231	3	4	136	1	0	0	0	0	1	0	0	0	17153	1261	44	3	1169	3	VEZT	12	95676231	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	42450984	95676231	38175664	72	17152											
GAS2L3	283431	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101017478	101017478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GAS2L3	NM_174942	exon10	c.G895T	p.V299F	AAAGGAGTTTCTA	.	67	14	77	1	.	227	T	101017478	G	T	101017478	3	4	136	1	0	0	0	0	1	0	0	0	6248	1029	36	3	925	3	GAS2L3	12	101017478	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	5341247	101017478	32834417	73	17153											
STAB2	55576	broad.mit.edu;bcgsc.ca	37	12	104060114	104060114	+	Missense_Mutation	SNP	G	G	A	rs147674384		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	STAB2	NM_017564	exon19	c.G2068A	p.A690T	TGTCCTGCTAACT	.	142	7	122	1	G|1.000;A|0.000	104	A	104060114	G	A	104060114	3	1	136	1	0	0	0	0	1	0	0	0	15237	1319	46	3	2142	3	STAB2	12	104060114	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	3042636	104060114	29791781	74	17154											
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119563215	119563215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SRRM4	NM_194286	exon7	c.G545A	p.R182H	CTCACCGCCACCG	.	72	23	70	0	.	2	A	119563215	G	A	119563215	3	1	136	1	0	0	0	0	1	0	0	0	15170	1087	38	1	571	1	SRRM4	12	119563215	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	15503101	119563215	14288680	75	17155											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123782650	123782650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SBNO1	NM_001167856	exon30	c.A3914T	p.Y1305F	AATACATAATATG	.	138	42	100	0	.	292	A	123782650	T	A	123782650	3	1	136	1	0	0	0	0	1	0	0	0	13862	1406	49	4	275	4	SBNO1	12	123782650	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	4219435	123782650	10069245	76	17156											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889752	23889752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_019066	exon1	c.G3138T	p.M1046I	TTTCACCATCTCC	.	188	39	190	0	.	.	A	23889752	C	A	23889752	3	1	136	1	0	0	0	0	1	0	0	0	9189	594	21	3	615	3	MAGEL2	15	23889752	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10		23889752	78641640	77	17157											
SCG3	29106	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	51975586	51975586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCG3	NM_013243	exon4	c.G352A	p.D118N	CTGATCGATGATT	.	34	4	25	0	.	91	A	51975586	G	A	51975586	3	1	136	1	0	0	0	0	1	0	0	0	13892	1058	37	1	366	1	SCG3	15	51975586	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	28085834	51975586	50555806	78	17158											
GRAMD2	196996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72455767	72455767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GRAMD2	NM_001012642	exon10	c.C796T	p.P266S	GCATGGGCCATGC	.	110	36	71	0	.	90	A	72455767	G	A	72455767	3	1	136	1	0	0	0	0	1	0	0	0	6750	1203	42	3	280	3	GRAMD2	15	72455767	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	20480181	72455767	30075625	79	17159											
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93499777	93499777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CHD2	NM_001271	exon16	c.T1898C	p.L633P	AAACTCTGATTGA	.	46	12	51	0	.	229	C	93499777	T	C	93499777	3	2	136	1	0	0	0	0	1	0	0	0	3325	1580	55	2	1960	2	CHD2	15	93499777	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	21044010	93499777	9031615	80	17160											
HAGHL	84264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	777559	777559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	HAGHL	NM_032304	exon1	c.T50G	p.V17G	ACCTGGTCATCGA	.	130	27	95	0	.	90	G	777559	T	G	777559	3	3	136	1	0	0	0	0	1	0	0	0	6946	1667	58	5	52	5	HAGHL	16	777559	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10		777559	89577194	81	17161											
NETO2	81831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47117548	47117548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	NETO2	NM_018092	exon9	c.G1162C	p.G388R	GGAACCCGGTTTT	.	57	23	83	0	.	90	G	47117548	C	G	47117548	3	3	136	1	0	0	0	0	1	0	0	0	10340	652	23	4	419	4	NETO2	16	47117548	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	46339989	47117548	43237205	82	17162											
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	67839340	67839340	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RANBP10	NM_020850	exon2	c.338delG	p.G113fs	TCTCTTCCTTTGC	.	91	33	65	0	.	227	-	67839340	C	-	67839340	7	5	136	1	0	1	0	1	0	0	0	0	13026	855	30	0	1576	0	RANBP10	16	67839340	Frame_Shift_Del	DEL	C	TCGA-FV-A495-01A-11D-A25V-10	20721792	67839340	22515413	83	17163											
ZCCHC2	54877	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	60225965	60225965	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZCCHC2	NM_017742	exon7	c.T1454G	p.L485X	AACACTTAAAAGA	.	133	46	131	2	.	432	G	60225965	T	G	60225965	4	3	136	1	0	0	0	0	0	1	0	0	17584	1764	61	5	1480	5	ZCCHC2	18	60225965	Nonsense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10		60225965	17851283	84	17164											
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11892231	11892231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF441	NM_152355	exon4	c.A1592G	p.Y531C	GACCCTATAAGTG	.	42	10	38	0	.	69	G	11892231	A	G	11892231	3	3	136	1	0	0	0	0	1	0	0	0	17911	449	16	2	1606	2	ZNF441	19	11892231	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10		11892231	47236752	85	17165											
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21240807	21240807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF430	NM_025189	exon5	c.A1693G	p.R565G	TACTGGAGAGAAA	.	19	11	25	0	.	516	G	21240807	A	G	21240807	3	3	136	1	0	0	0	0	1	0	0	0	17901	296	11	2	1711	2	ZNF430	19	21240807	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	9348576	21240807	37888176	86	17166											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31038889	31038889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF536	NM_014717	exon4	c.G2363A	p.G788D	ATGCCGGCACGCA	.	79	14	85	0	.	144	A	31038889	G	A	31038889	3	1	136	1	0	0	0	0	1	0	0	0	17971	1203	42	3	2373	3	ZNF536	19	31038889	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	9798082	31038889	28090094	87	17167											
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46850460	46850460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PPP5C	NM_006247	exon1	c.A107G	p.N36S	AGGCCAATGACTA	.	53	9	37	0	.	227	G	46850460	A	G	46850460	3	3	136	1	0	0	0	0	1	0	0	0	12406	101	4	2	109	2	PPP5C	19	46850460	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	15811571	46850460	12278523	88	17168											
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52090484	52090484	+	Silent	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF175	NM_007147	exon5	c.T900A	p.I300I	GAGAATTCATAGT	.	131	33	102	0	.	90	A	52090484	T	A	52090484	2	1	136	1	0	0	0	0	0	0	0	1	17742	1771	62	4		4	ZNF175	19	52090484	Silent	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	5240024	52090484	7038499	89	17169											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55143640	55143640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LILRB1	NM_001081637	exon5	c.C613T	p.P205S	AACTCTCCCTATG	.	290	69	280	0	.	137	T	55143640	C	T	55143640	3	4	136	1	0	0	0	0	1	0	0	0	8790	855	30	3	627	3	LILRB1	19	55143640	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	3053156	55143640	3985343	90	17170											
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56104976	56104976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FIZ1	NM_032836	exon3	c.G331A	p.V111I	CGCAGACCAGGCA	.	127	27	108	0	.	90	T	56104976	C	T	56104976	3	4	136	1	0	0	0	0	1	0	0	0	5900	507	18	3	1163	3	FIZ1	19	56104976	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	961336	56104976	3024007	91	17171											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57327699	57327699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PEG3	NM_001146184	exon9	c.A2111T	p.Q704L	ATTTTCTGATGCT	.	101	20	100	0	.	164	A	57327699	T	A	57327699	3	1	136	1	0	0	0	0	1	0	0	0	11720	1580	55	4	2659	4	PEG3	19	57327699	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	1222723	57327699	1801284	92	17172											
OVOL2	58495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	18005322	18005322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	OVOL2	NM_021220	exon4	c.C786G	p.H262Q	CTCCTGGTGTGCG	.	293	21	237	0	.	68	C	18005322	G	C	18005322	3	2	136	1	0	0	0	0	1	0	0	0	11327	1252	44	4	45	4	OVOL2	20	18005322	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		18005322	45020198	93	17173											
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36983752	36983752	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LBP	NM_004139	exon5	c.G531A	p.L177L	GTGGCTGTTGAAC	.	102	39	92	0	.	91	A	36983752	G	A	36983752	2	1	136	1	0	0	0	0	0	0	0	1	8651	1364	48	3		3	LBP	20	36983752	Silent	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	18978430	36983752	26041768	94	17174											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56073609	56073609	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CTCFL	NM_001269041	exon10	c.G1989A	p.K663K	CTCTCACTTATCC	.	158	40	111	0	.	292	T	56073609	C	T	56073609	2	4	136	1	0	0	0	0	0	0	0	1	4001	564	20	3		3	CTCFL	20	56073609	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	19089857	56073609	6951911	95	17175											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	36960731	36960731	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CACNG2	NM_006078	exon4	c.C639T	p.R213R	CGTGGCGCGGGCC	.	22	10	20	0	.	90	A	36960731	G	A	36960731	2	1	136	1	0	0	0	0	0	0	0	1	2557	1074	38	1		1	CACNG2	22	36960731	Silent	SNP	G	TCGA-FV-A495-01A-11D-A25V-10		36960731	14343835	96	17176											
CXorf58	254158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23953337	23953337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CXorf58	NM_152761	exon7	c.C580A	p.P194T	GAGGCCCCTGCAT	.	26	8	37	0	.	130	A	23953337	C	A	23953337	3	1	136	1	0	0	0	0	1	0	0	0	4114	623	22	3	602	3	CXorf58	23	23953337	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10		23953337	131317223	97	17177											
DMD	1756	hgsc.bcm.edu;broad.mit.edu	37	X	31165436	31165436	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DMD	NM_004006	exon75	c.C10753T	p.Q3585X	CCAGCTGTTTATT	.	165	10	154	0	.	265	A	31165436	G	A	31165436	4	1	136	1	0	0	0	0	0	1	0	0	4580	1386	48	3	410	3	DMD	23	31165436	Nonsense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	7212099	31165436	124105124	98	17178											
GPR82	27197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41586979	41586979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR82	NM_080817	exon3	c.T700A	p.C234S	AGAACCTGTACGT	.	193	58	188	2	.	110	A	41586979	T	A	41586979	3	1	136	1	0	0	0	0	1	0	0	0	6712	1580	55	4	702	4	GPR82	23	41586979	Missense_Mutation	SNP	T	TCGA-FV-A495-01A-11D-A25V-10	10421543	41586979	113683581	99	17179											
UBA1	7317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47072228	47072228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	UBA1	NM_153280	exon22	c.A2612G	p.E871G	GGGCAGAAAACTA	.	376	95	316	1	.	227	G	47072228	A	G	47072228	3	3	136	1	0	0	0	0	1	0	0	0	16824	246	9	2	2694	2	UBA1	23	47072228	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	5485249	47072228	108198332	100	17180											
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106558	53106558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR173	NM_018969	exon2	c.G755A	p.G252E	GCCGTGGGCCCAT	.	49	10	40	0	.	130	A	53106558	G	A	53106558	3	1	136	1	0	0	0	0	1	0	0	0	6671	1232	43	3	757	3	GPR173	23	53106558	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	6034330	53106558	102164002	101	17181											
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54989780	54989780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PFKFB1	NM_001271804	exon2	c.G133A	p.V45M	TGATCACCATTGT	.	159	50	172	0	.	131	T	54989780	C	T	54989780	3	4	136	1	0	0	0	0	1	0	0	0	11760	507	18	3	1334	3	PFKFB1	23	54989780	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	1883222	54989780	100280780	102	17182											
ARR3	407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69501565	69501565	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARR3	NM_004312	exon17	c.C1116T	p.G372G	GAAAGGCGAGGAG	.	100	25	89	0	.	156	T	69501565	C	T	69501565	2	4	136	1	0	0	0	0	0	0	0	1	979	755	27	1		1	ARR3	23	69501565	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	14511785	69501565	85768995	103	17183											
CHIC1	53344	hgsc.bcm.edu;broad.mit.edu	37	X	72783227	72783227	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CHIC1	NM_001039840	exon1	c.C107A	p.S36X	CGTCGTCGTCGGT	.	136	9	107	0	.	130	A	72783227	C	A	72783227	4	1	136	1	0	0	0	0	0	1	0	0	3343	893	31	1	109	1	CHIC1	23	72783227	Nonsense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	3281662	72783227	82487333	104	17184											
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78426850	78426850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR174	NM_032553	exon1	c.C346G	p.R116G	GTGCGACGATTTT	.	491	124	445	0	.	130	G	78426850	C	G	78426850	3	3	136	1	0	0	0	0	1	0	0	0	6672	528	19	4	348	4	GPR174	23	78426850	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	5643623	78426850	76843710	105	17185											
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102004068	102004068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BHLHB9	NM_001142530	exon2	c.G145A	p.G49R	AAGACAGGGTCTA	.	376	108	368	0	.	132	A	102004068	G	A	102004068	3	1	136	1	0	0	0	0	1	0	0	0	1420	1000	35	3	147	3	BHLHB9	23	102004068	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	23577218	102004068	53266492	106	17186											
AMOT	154796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	112022293	112022293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	AMOT	NM_001113490	exon10	c.G3089C	p.S1030T	GCTGGACTTGCAG	.	252	43	259	0	.	131	G	112022293	C	G	112022293	3	3	136	1	0	0	0	0	1	0	0	0	582	565	20	4	173	4	AMOT	23	112022293	Missense_Mutation	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	10018225	112022293	43248267	107	17187											
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	135067806	135067806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC9A6	NM_006359	exon1	c.G145A	p.E49K	GGCGGAGAGGCTA	.	60	15	69	0	.	131	A	135067806	G	A	135067806	3	1	136	1	0	0	0	0	1	0	0	0	14718	943	33	3	147	3	SLC9A6	23	135067806	Missense_Mutation	SNP	G	TCGA-FV-A495-01A-11D-A25V-10	23045513	135067806	20202754	108	17188											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144903985	144903985	+	Silent	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLITRK2	NM_001144005	exon5	c.C42A	p.A14A	CGTGGCCGGGATC	.	199	37	167	0	.	136	A	144903985	C	A	144903985	2	1	136	1	0	0	0	0	0	0	0	1	14743	639	23	1		1	SLITRK2	23	144903985	Silent	SNP	C	TCGA-FV-A495-01A-11D-A25V-10	9836179	144903985	10366575	109	17189											
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153586830	153586830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FLNA	NM_001456	exon27	c.T4581A	p.D1527E	CTCTTCATCTCCA	.	164	29	154	0	.	599	T	153586830	A	T	153586830	3	4	136	1	0	0	0	0	1	0	0	0	5933	214	8	4	3450	4	FLNA	23	153586830	Missense_Mutation	SNP	A	TCGA-FV-A495-01A-11D-A25V-10	8682845	153586830	1683730	110	17190											
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	4772487	4772487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AJAP1	NM_018836	exon2	c.C557T	p.T186M	GGCCCACGGGGGA	.	40	13	52	0	.	515	T	4772487	C	T	4772487	3	4	137	1	0	0	0	0	1	0	0	0	438	536	19	1	563	1	AJAP1	1	4772487	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		4772487	244478134	1	17191											
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7724692	7724692	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAMTA1	NM_015215	exon9	c.G2085T	p.S695S	GACCTCGCAGGCG	.	113	79	114	0	.	520	T	7724692	G	T	7724692	2	4	137	1	0	0	0	0	0	0	0	1	2613	1074	38	1		1	CAMTA1	1	7724692	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	2952205	7724692	241525929	2	17192											
PPCS	79717	hgsc.bcm.edu;broad.mit.edu	37	1	42922564	42922564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PPCS	NM_024664	exon1	c.C328T	p.P110S	TCGGGCCCAGCCC	.	46	4	72	0	.	90	T	42922564	C	T	42922564	3	4	137	1	0	0	0	0	1	0	0	0	12305	623	22	3	330	3	PPCS	1	42922564	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	35197872	42922564	206328057	3	17193											
SLC6A9	6536	hgsc.bcm.edu;bcgsc.ca	37	1	44468280	44468280	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC6A9	NM_201649	exon7	c.G981A	p.L327L	AATGGTCAGCACC	.	113	5	143	0	.	90	T	44468280	C	T	44468280	2	4	137	1	0	0	0	0	0	0	0	1	14691	813	29	3		3	SLC6A9	1	44468280	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	1545716	44468280	204782341	4	17194											
ZFYVE9	9372	hgsc.bcm.edu;bcgsc.ca	37	1	52761566	52761566	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZFYVE9	NM_007324	exon11	c.3074-1G>T	.	TCCATAGTTTATC	.	94	5	131	0	.	230	T	52761566	G	T	52761566	5	4	137	1	0	0	0	0	0	0	1	0	17668	1043	36	3	3299	3	ZFYVE9	1	52761566	Splice_Site	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	8293286	52761566	196489055	5	17195											
LRP8	7804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53727880	53727880	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP8	NM_017522	exon12	c.1388-1G>A	.	GCAGATCTTGGGA	.	152	44	152	1	.	90	T	53727880	C	T	53727880	5	4	137	1	0	0	0	0	0	0	1	0	8963	927	32	3	1149	3	LRP8	1	53727880	Splice_Site	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	966314	53727880	195522741	6	17196											
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150680868	150680868	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HORMAD1	NM_032132	exon9	c.C411T	p.N137N	AGATTCGTTGCTT	.	170	21	147	0	.	92	A	150680868	G	A	150680868	2	1	137	1	0	0	0	0	0	0	0	1	7286	1136	40	1		1	HORMAD1	1	150680868	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	96952988	150680868	98569753	7	17197											
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154018769	154018769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP210L	NM_001159484	exon26	c.C3560T	p.T1187I	ACCTTGGTAGCTG	.	209	9	146	0	.	77	A	154018769	G	A	154018769	3	1	137	1	0	0	0	0	1	0	0	0	10761	1261	44	3	2166	3	NUP210L	1	154018769	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	3337901	154018769	95231852	8	17198											
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157771741	157771741	+	Missense_Mutation	SNP	C	C	T	rs200955967		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FCRL1	NM_001159397	exon5	c.G850A	p.A284T	GCTGGGCCCCCAG	.	306	35	159	0	C|0.999;T|0.000	153	T	157771741	C	T	157771741	3	4	137	1	0	0	0	0	1	0	0	0	5794	739	26	3	533	3	FCRL1	1	157771741	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	3752972	157771741	91478880	9	17199											
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160121863	160121863	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ATP1A4	NM_144699	exon1	c.T33G	p.A11A	AGTGGCTCCCCAT	.	31	14	38	0	.	94	G	160121863	T	G	160121863	2	3	137	1	0	0	0	0	0	0	0	1	1131	1538	54	5		5	ATP1A4	1	160121863	Silent	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	2350122	160121863	89128758	10	17200											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181700351	181700351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1E	NM_001205293	exon19	c.C2281A	p.P761T	TGGGAGCCACGCA	.	404	75	282	0	.	95	A	181700351	C	A	181700351	3	1	137	1	0	0	0	0	1	0	0	0	2542	739	26	3	2355	3	CACNA1E	1	181700351	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	21578488	181700351	67550270	11	17201											
SLC26A9	115019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205890933	205890933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC26A9	NM_134325	exon17	c.C1816T	p.P606S	TGGGGGGCGCATT	.	175	56	101	1	.	92	A	205890933	G	A	205890933	3	1	137	1	0	0	0	0	1	0	0	0	14524	1203	42	3	875	3	SLC26A9	1	205890933	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	24190582	205890933	43359688	12	17202											
SLC30A10	55532	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220089062	220089067	+	In_Frame_Del	DEL	AAGTCC	AAGTCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AAGTCC	AAGTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC30A10	NM_018713	exon4	c.1182_1187del	p.394_396del	AACAGTAAGTCCT	.	248	22	176	0	.	90	-	220089067	AAGTCC	-	220089062	7	5	137	1	0	1	0	1	0	0	0	0	14554	372	13	0	274	0	SLC30A10	1	220089062	In_Frame_Del	DEL	AAGTCC	TCGA-FV-A496-01A-11D-A25V-10	14198129	220089062	29161559	13	17203											
TARBP1	6894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	234536930	234536930	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TARBP1	NM_005646	exon25	c.A4068T	p.L1356L	CACCTCTAGACAA	.	78	46	64	0	.	93	A	234536930	T	A	234536930	2	1	137	1	0	0	0	0	0	0	0	1	15552	1509	53	4		4	TARBP1	1	234536930	Silent	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	14447868	234536930	14713691	14	17204											
ADI1	55256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3502749	3502749	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADI1	NM_018269	exon4	c.G525A	p.L175L	CTGTGCCAGAAAT	.	171	27	146	2	.	91	T	3502749	C	T	3502749	2	4	137	1	0	0	0	0	0	0	0	1	315	581	21	3		3	ADI1	2	3502749	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		3502749	239696624	15	17205											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61726908	61726909	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	p.E177I	AATACTTCTTCAC	.	125	6	113	0	.	.	AT	61726909	TC	AT	61726908	3	1	137	1	0	0	0	0	1	0	0	0	17442	1783	62	4	2761	4	XPO1	2	61726908	Missense_Mutation	DNP	TC	TCGA-FV-A496-01A-11D-A25V-10	58224159	61726908	181472465	16	17206											
RGPD4	285190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108499260	108499260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RGPD4	NM_182588	exon22	c.C5197A	p.L1733I	AGACTTCTTCCTG	.	1025	200	937	0	.	2	A	108499260	C	A	108499260	3	1	137	1	0	0	0	0	1	0	0	0	13288	913	32	3	5283	3	RGPD4	2	108499260	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	46772352	108499260	134700113	17	17207											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141128766	141128766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP1B	NM_018557	exon70	c.T10857G	p.C3619W	ATCAGCACAATCA	.	271	36	211	0	.	311	C	141128766	A	C	141128766	3	2	137	1	0	0	0	0	1	0	0	0	8955	157	6	5	3030	5	LRP1B	2	141128766	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	32629506	141128766	102070607	18	17208											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152466364	152466364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NEB	NM_001271208	exon81	c.G12289C	p.D4097H	TAATGTCGTTTTG	.	210	48	170	1	.	145	G	152466364	C	G	152466364	3	3	137	1	0	0	0	0	1	0	0	0	10302	884	31	4	13805	4	NEB	2	152466364	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	11337598	152466364	90733009	19	17209											
SCN9A	6335	hgsc.bcm.edu;bcgsc.ca	37	2	167056365	167056366	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCN9A	NM_002977	exon27	c.4750_4751del	p.1584_1584del	TCAGCTAGAAACA	.	126	51	98	0	.	181	-	167056366	AG	-	167056365	7	5	137	1	0	1	0	1	0	0	0	0	13925	420	15	0	1186	0	SCN9A	2	167056365	Frame_Shift_Del	DEL	AG	TCGA-FV-A496-01A-11D-A25V-10	14590001	167056365	76143008	20	17210											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204067444	204067444	+	Silent	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NBEAL1	NM_001114132	exon50	c.A7359T	p.G2453G	CTGTGGAATACAT	.	130	7	121	0	.	92	T	204067444	A	T	204067444	2	4	137	1	0	0	0	0	0	0	0	1	10188	233	9	4		4	NBEAL1	2	204067444	Silent	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	37011079	204067444	39131929	21	17211											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219874178	219874178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CCDC108	NM_194302	exon28	c.C4457T	p.S1486F	CTCACAGACACCT	.	91	36	120	0	.	94	A	219874178	G	A	219874178	3	1	137	1	0	0	0	0	1	0	0	0	2743	942	33	3	1352	3	CCDC108	2	219874178	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	15806734	219874178	23325195	22	17212											
UGT1A4	54657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234628158	234628158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UGT1A4	NM_007120	exon1	c.A692G	p.Y231C	CCCCTTATGCAAG	.	299	85	289	0	.	2	G	234628158	A	G	234628158	3	3	137	1	0	0	0	0	1	0	0	0	16944	449	16	2	694	2	UGT1A4	2	234628158	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	14753980	234628158	8571215	23	17213											
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	53845180	53845180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1D	NM_000720	exon49	c.C6293T	p.P2098L	GGGACCCAAAATT	.	203	13	196	0	.	100	T	53845180	C	T	53845180	3	4	137	1	0	0	0	0	1	0	0	0	2541	594	21	3	6595	3	CACNA1D	3	53845180	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		53845180	144177250	24	17214											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77656991	77656991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ROBO2	NM_002942	exon21	c.A3179C	p.K1060T	CTTCTAAACCACA	.	79	15	76	0	.	328	C	77656991	A	C	77656991	3	2	137	1	0	0	0	0	1	0	0	0	13514	14	1	5	3263	5	ROBO2	3	77656991	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	23811811	77656991	120365439	25	17215											
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101571988	101571988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NFKBIZ	NM_031419	exon5	c.T618G	p.N206K	TCTCAATGAACCC	.	88	36	88	0	.	92	G	101571988	T	G	101571988	3	3	137	1	0	0	0	0	1	0	0	0	10383	1461	51	5	636	5	NFKBIZ	3	101571988	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	23914997	101571988	96450442	26	17216											
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184008634	184008634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ECE2	NM_014693	exon16	c.C2174A	p.A725D	CGCATGCCTTTGA	.	146	7	180	0	.	94	A	184008634	C	A	184008634	3	1	137	1	0	0	0	0	1	0	0	0	4890	739	26	3	2800	3	ECE2	3	184008634	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	82436646	184008634	14013796	27	17217											
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184711798	184711798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	VPS8	NM_001009921	exon42	c.G3613C	p.G1205R	AAACTTGGAGAAA	.	113	5	160	0	.	91	C	184711798	G	C	184711798	3	2	137	1	0	0	0	0	1	0	0	0	17215	1349	47	4	3775	4	VPS8	3	184711798	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	703164	184711798	13310632	28	17218											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	438107	438107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF721	NM_133474	exon3	c.G149T	p.W50L	CCTTTCCTTAATT	.	135	23	127	0	.	47	A	438107	C	A	438107	3	1	137	1	0	0	0	0	1	0	0	0	18119	681	24	3	2626	3	ZNF721	4	438107	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		438107	190716169	29	17219											
BEND4	389206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42145862	42145862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	BEND4	NM_001159547	exon3	c.G637A	p.E213K	AGTGCTCCTGTCT	.	284	77	266	0	.	90	T	42145862	C	T	42145862	3	4	137	1	0	0	0	0	1	0	0	0	1400	864	30	3	983	3	BEND4	4	42145862	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	41707755	42145862	149008414	30	17220											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79398969	79398969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FRAS1	NM_025074	exon55	c.G7852A	p.V2618I	TGACAGGTCCAGT	.	207	110	199	0	.	68	A	79398969	G	A	79398969	3	1	137	1	0	0	0	0	1	0	0	0	6042	1275	44	3	8145	3	FRAS1	4	79398969	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	37253107	79398969	111755307	31	17221											
MEPE	56955	broad.mit.edu;bcgsc.ca	37	4	88766214	88766214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MEPE	NM_020203	exon4	c.T194C	p.V65A	ATATTGTCCAGGA	.	27	10	38	1	.	93	C	88766214	T	C	88766214	3	2	137	1	0	0	0	0	1	0	0	0	9478	1667	58	2	204	2	MEPE	4	88766214	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	9367245	88766214	102388062	32	17222											
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90170573	90170573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPRIN3	NM_198281	exon2	c.C689A	p.S230Y	ATTTCAGAGTCAC	.	62	20	60	0	.	71	T	90170573	G	T	90170573	3	4	137	1	0	0	0	0	1	0	0	0	6731	942	33	3	1645	3	GPRIN3	4	90170573	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1404359	90170573	100983703	33	17223											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114274746	114274746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ANK2	NM_001148	exon38	c.G4972C	p.V1658L	CAGACAGTTCAAG	.	52	25	76	0	.	583	C	114274746	G	C	114274746	3	2	137	1	0	0	0	0	1	0	0	0	621	1029	36	4	5187	4	ANK2	4	114274746	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	24104173	114274746	76879530	34	17224											
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	223682	223682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDHA	NM_004168	exon2	c.C149T	p.S50F	CAGATTCCGTAAG	.	331	75	355	0	.	226	T	223682	C	T	223682	3	4	137	1	0	0	0	0	1	0	0	0	13963	869	30	3	155	3	SDHA	5	223682	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		223682	180691578	35	17225											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127705012	127705012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBN2	NM_001999	exon16	c.G2111T	p.S704I	CAGGTACTGCGCA	.	48	17	66	0	.	146	A	127705012	C	A	127705012	3	1	137	1	0	0	0	0	1	0	0	0	5703	565	20	3	6827	3	FBN2	5	127705012	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	127481330	127705012	53210248	36	17226											
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158139190	158139190	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EBF1	NM_024007	exon14	c.C1521T	p.N507N	TGAGCCGTTGAGG	.	84	25	117	0	.	92	A	158139190	G	A	158139190	2	1	137	1	0	0	0	0	0	0	0	1	4880	1136	40	1		1	EBF1	5	158139190	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	30434178	158139190	22776070	37	17227											
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42932089	42932089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PEX6	NM_000287	exon17	c.A2927C	p.K976T	GCAAACTTGCGCT	.	104	42	122	0	.	91	G	42932089	T	G	42932089	3	3	137	1	0	0	0	0	1	0	0	0	11750	1609	56	5	19	5	PEX6	6	42932089	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10		42932089	128182978	38	17228											
KLHDC3	116138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42986679	42986679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHDC3	NM_057161	exon8	c.G899T	p.G300V	TTGTTGGTGACAA	.	73	13	91	0	.	91	T	42986679	G	T	42986679	3	4	137	1	0	0	0	0	1	0	0	0	8357	1261	44	3	925	3	KLHDC3	6	42986679	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	54590	42986679	128128388	39	17229											
DEFB110	245913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49989618	49989618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DEFB110	NM_001037728	exon1	c.C31A	p.H11N	AAAAGTGCAGAAT	.	51	11	45	0	.	45	T	49989618	G	T	49989618	3	4	137	1	0	0	0	0	1	0	0	0	4400	1319	46	3	316	3	DEFB110	6	49989618	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	7002939	49989618	121125449	40	17230											
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128105	88128105	+	Missense_Mutation	SNP	C	C	A	rs140570931	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C6orf165	NM_001031743	exon7	c.C811A	p.Q271K	ATACGACAATATG	.	101	23	88	0	C|1.000;T|0.000	90	A	88128105	C	A	88128105	3	1	137	1	0	0	0	0	1	0	0	0	2341	479	17	3	833	3	C6orf165	6	88128105	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	38138487	88128105	82986962	41	17231											
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155504406	155504406	+	Missense_Mutation	SNP	G	G	T	rs76467763	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TIAM2	NM_012454	exon13	c.G2836T	p.G946W	TTAAATGGGGAAG	.	113	28	106	0	.	93	T	155504406	G	T	155504406	3	4	137	1	0	0	0	0	1	0	0	0	15888	1348	47	3	2878	3	TIAM2	6	155504406	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	67376301	155504406	15610661	42	17232											
TMEM181	57583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159029441	159029441	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM181	NM_020823	exon9	c.C1161T	p.F387F	CATGTTCCTGTGC	.	315	141	366	0	.	70	T	159029441	C	T	159029441	2	4	137	1	0	0	0	0	0	0	0	1	16097	854	30	3		3	TMEM181	6	159029441	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	3525035	159029441	12085626	43	17233											
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4008918	4008918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDK1	NM_152744	exon11	c.C1576T	p.R526W	TCTGTCCGGATTC	.	185	68	145	1	.	138	T	4008918	C	T	4008918	3	4	137	1	0	0	0	0	1	0	0	0	13968	643	23	1	1618	1	SDK1	7	4008918	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		4008918	155129745	44	17234											
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4900131	4900131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PAPOLB	NM_020144	exon1	c.G1311A	p.M437I	CACCCACATTGTA	.	273	55	184	0	.	493	T	4900131	C	T	4900131	3	4	137	1	0	0	0	0	1	0	0	0	11430	478	17	3	606	3	PAPOLB	7	4900131	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	891213	4900131	154238532	45	17235											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	18767353	18767353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HDAC9	NM_178425	exon12	c.C1882A	p.R628S	ATGGACCGCCCCC	.	284	18	205	0	.	227	A	18767353	C	A	18767353	3	1	137	1	0	0	0	0	1	0	0	0	7014	652	23	1	1979	1	HDAC9	7	18767353	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	13867222	18767353	140371310	46	17236											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47384383	47384383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TNS3	NM_022748	exon20	c.A2620T	p.S874C	CTGGGCTGCTCAG	.	68	32	49	0	.	94	A	47384383	T	A	47384383	3	1	137	1	0	0	0	0	1	0	0	0	16341	1580	55	4	1765	4	TNS3	7	47384383	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	28617030	47384383	111754280	47	17237											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48559880	48559880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA13	NM_152701	exon53	c.C14041T	p.R4681X	CTTCTGCGATGGC	.	191	8	165	0	.	521	T	48559880	C	T	48559880	4	4	137	1	0	0	0	0	0	1	0	0	31	760	27	1	14080	1	ABCA13	7	48559880	Nonsense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	1175497	48559880	110578783	48	17238											
SEMA3C	10512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80435065	80435065	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SEMA3C	NM_006379	exon7	c.T548A	p.L183H	GAGAAAAGCTCCT	.	51	8	31	0	.	515	T	80435065	A	T	80435065	3	4	137	1	0	0	0	0	1	0	0	0	14026	72	3	4	1755	4	SEMA3C	7	80435065	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	31875185	80435065	78703598	49	17239											
CYP3A7	1551	ucsc.edu;bcgsc.ca	37	7	99314832	99314832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP3A7	NM_000765	exon6	c.A489C	p.E163D	CTCTGCTTCCCGC	.	267	75	275	2	.	91	G	99314832	T	G	99314832	3	3	137	1	0	0	0	0	1	0	0	0	4181	1606	56	5	1054	5	CYP3A7	7	99314832	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	18879767	99314832	59823831	50	17240											
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141734140	141734140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MGAM	NM_004668	exon15	c.A1748C	p.H583P	ACATTCACAATCT	.	153	132	241	2	.	70	C	141734140	A	C	141734140	3	2	137	1	0	0	0	0	1	0	0	0	9541	159	6	5	1802	5	MGAM	7	141734140	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	42419308	141734140	17404523	51	17241											
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142625797	142625797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPV5	NM_019841	exon6	c.G751A	p.G251S	TGTTACCCTCCAC	.	95	12	153	0	.	177	T	142625797	C	T	142625797	3	4	137	1	0	0	0	0	1	0	0	0	16596	623	22	3	1478	3	TRPV5	7	142625797	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	891657	142625797	16512866	52	17242											
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22136992	22136992	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIWIL2	NM_001135721	exon2	c.T93G	p.A31A	ACAAGCTTCTAAA	.	117	52	113	0	.	91	G	22136992	T	G	22136992	2	3	137	1	0	0	0	0	0	0	0	1	11958	1596	56	5		5	PIWIL2	8	22136992	Silent	SNP	T	TCGA-FV-A496-01A-11D-A25V-10		22136992	124227030	53	17243											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72967815	72967815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPA1	NM_007332	exon12	c.G1385T	p.C462F	CTCTGACAGGTAT	.	345	74	320	0	.	230	A	72967815	C	A	72967815	3	1	137	1	0	0	0	0	1	0	0	0	16574	478	17	3	2038	3	TRPA1	8	72967815	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	50830823	72967815	73396207	54	17244											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113519031	113519031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CSMD3	NM_198123	exon29	c.C4784A	p.S1595Y	CCTGAAGATCCTG	.	85	31	80	0	.	1132	T	113519031	G	T	113519031	3	4	137	1	0	0	0	0	1	0	0	0	3946	942	33	3	6511	3	CSMD3	8	113519031	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	40551216	113519031	32844991	55	17245											
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131104271	131104271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASAP1	NM_018482	exon25	c.C2520A	p.D840E	GGGAGGGTCGGAT	.	86	40	77	0	.	95	T	131104271	G	T	131104271	3	4	137	1	0	0	0	0	1	0	0	0	1010	1252	44	3	893	3	ASAP1	8	131104271	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	17585240	131104271	15259751	56	17246											
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu	37	9	4583116	4583116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1272delT	p.S424fs	GCTGAGTGCCGTG	.	180	13	196	0	.	514	-	4583116	T	-	4583116	7	5	137	1	0	1	0	1	0	0	0	0	14431	1693	59	0	1314	0	SLC1A1	9	4583116	Frame_Shift_Del	DEL	T	TCGA-FV-A496-01A-11D-A25V-10		4583116	136630315	57	17247	93	2									
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	4583118	4583133	+	Frame_Shift_Del	DEL	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1274_1289del	p.425_430del	TGAGTGCCGTGGG	.	168	13	198	0	.	514	-	4583133	CCGTGGGCCTGCCCGC	-	4583118	7	5	137	1	0	1	0	1	0	0	0	0	14431	739	26	0	1316	0	SLC1A1	9	4583118	Frame_Shift_Del	DEL	CCGTGGGCCTGCCCGC	TCGA-FV-A496-01A-11D-A25V-10	2	4583118	136630313	58	17248	93	2									
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	95228783	95228783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASPN	NM_001193335	exon4	c.G458A	p.R153Q	AGCCTTCGCAACT	.	210	17	202	0	.	514	T	95228783	C	T	95228783	3	4	137	1	0	0	0	0	1	0	0	0	1057	884	31	1	704	1	ASPN	9	95228783	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	90645665	95228783	45984648	59	17249											
RET	5979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43615627	43615627	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RET	NM_020975	exon15	c.G2706A	p.E902E	TGAAGAGGATTCC	.	75	21	93	1	.	4507	A	43615627	G	A	43615627	2	1	137	1	0	0	0	0	0	0	0	1	13235	991	35	3		3	RET	10	43615627	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10		43615627	91919120	60	17250											
GDF2	2658	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413956	48413956	+	Silent	SNP	C	C	T	rs201627211		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GDF2	NM_016204	exon2	c.G912A	p.T304T	GCCATCCGTGTCC	.	104	21	142	2	C|0.999;T|0.001	229	T	48413956	C	T	48413956	2	4	137	1	0	0	0	0	0	0	0	1	6314	639	23	1		1	GDF2	10	48413956	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	4798329	48413956	87120791	61	17251											
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	68687250	68687251	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	p.I193F	TAACCGGATCCGA	.	54	4	78	0	.	.	TT	68687251	GA	TT	68687250	3	4	137	1	0	0	0	0	1	0	0	0	9041	1161	41	3	582	3	LRRTM3	10	68687250	Missense_Mutation	DNP	GA	TCGA-FV-A496-01A-11D-A25V-10	20273294	68687250	66847497	62	17252											
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103609618	103609618	+	Missense_Mutation	SNP	G	G	A	rs199549255		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C10orf76	NM_024541	exon25	c.C1892T	p.T631M	GTGAGCGTGTCAT	.	92	40	115	0	G|1.000;A|0.000	90	A	103609618	G	A	103609618	3	1	137	1	0	0	0	0	1	0	0	0	1616	1145	40	1	185	1	C10orf76	10	103609618	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	34922368	103609618	31925129	63	17253											
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47801951	47801951	+	Missense_Mutation	SNP	T	T	C	rs62000434		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP160	NM_015231	exon35	c.A4165G	p.I1389V	GATCAATAGAGGA	.	114	30	97	0	T|0.987;C|0.013	209	C	47801951	T	C	47801951	3	2	137	1	0	0	0	0	1	0	0	0	10757	1406	49	2	153	2	NUP160	11	47801951	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10		47801951	87204565	64	17254											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48185171	48185171	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PTPRJ	NM_002843	exon23	c.3719+1G>T	.	TTGCAGGTACGCA	.	106	57	102	0	.	541	T	48185171	G	T	48185171	5	4	137	1	0	0	0	0	0	0	1	0	12804	1275	44	3	3819	3	PTPRJ	11	48185171	Splice_Site	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	383220	48185171	86821345	65	17255											
OR5T1	390155	hgsc.bcm.edu;bcgsc.ca	37	11	56044023	56044051	+	Frame_Shift_Del	DEL	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OR5T1	NM_001004745	exon1	c.909_937del	p.303_313del	CTACAGTTTGCGG	.	100	4	160	0	.	71	-	56044051	TTTGCGGAACAAAGATGTAAAGGAGGCAA	-	56044023	7	5	137	1	0	1	0	1	0	0	0	0	11181	1722	60	0	911	0	OR5T1	11	56044023	Frame_Shift_Del	DEL	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TCGA-FV-A496-01A-11D-A25V-10	7858852	56044023	78962493	66	17256											
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57577636	57577636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2491T	p.G831X	ATCTGGGGATATA	.	48	12	37	0	.	272	T	57577636	G	T	57577636	4	4	137	1	0	0	0	0	0	1	0	0	4019	1233	43	3	2545	3	CTNND1	11	57577636	Nonsense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1533613	57577636	77428880	67	17257	94	2									
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57577637	57577637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2492T	p.G831V	TCTGGGGATATAA	.	48	12	37	0	.	272	T	57577637	G	T	57577637	3	4	137	1	0	0	0	0	1	0	0	0	4019	1174	41	3	2546	3	CTNND1	11	57577637	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1	57577637	77428879	68	17258	94	2									
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61912532	61912532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INCENP	NM_001040694	exon12	c.G1684A	p.D562N	GAGGAGGACAAGC	.	91	49	102	0	.	227	A	61912532	G	A	61912532	3	1	137	1	0	0	0	0	1	0	0	0	7733	1174	41	3	1726	3	INCENP	11	61912532	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	4334895	61912532	73093984	69	17259											
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63277947	63277947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LGALS12	NM_001142535	exon5	c.G574A	p.G192S	GTGGAGGGCAGCA	.	237	46	164	0	.	92	A	63277947	G	A	63277947	3	1	137	1	0	0	0	0	1	0	0	0	8739	1232	43	3	592	3	LGALS12	11	63277947	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1365415	63277947	71728569	70	17260											
SF1	7536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64537468	64537468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SF1	NM_001178030	exon5	c.A822C	p.E274D	GTTGATTTCTGGG	.	109	50	84	0	.	227	G	64537468	T	G	64537468	3	3	137	1	0	0	0	0	1	0	0	0	14145	1838	64	5	1646	5	SF1	11	64537468	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	1259521	64537468	70469048	71	17261											
FOLR3	2352	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71847151	71847151	+	Silent	SNP	C	C	T	rs151190708		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	CGAGGACGAGCTG	.	377	102	302	0	C|0.979;T|0.021	.	T	71847151	C	T	71847151	2	4	137	1	0	0	0	0	0	0	0	1	5983	535	19	1		1	FOLR3	11	71847151	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	7309683	71847151	63159365	72	17262											
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102988459	102988459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DYNC2H1	NM_001377	exon6	c.C866T	p.S289L	GTATTTCAATTTG	.	81	11	67	1	.	68	T	102988459	C	T	102988459	3	4	137	1	0	0	0	0	1	0	0	0	4846	838	29	3	888	3	DYNC2H1	11	102988459	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	31141308	102988459	32018057	73	17263											
JAM3	83700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134014143	134014143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	JAM3	NM_032801	exon4	c.G264C	p.L88F	AGACTTGGCGGGT	.	94	21	64	0	.	91	C	134014143	G	C	134014143	3	2	137	1	0	0	0	0	1	0	0	0	7944	1339	47	4	413	4	JAM3	11	134014143	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	31025684	134014143	992373	74	17264											
ZNF705A	440077	broad.mit.edu;mdanderson.org	37	12	8329947	8329947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF705A	NM_001004328	exon5	c.G671A	p.G224E	ACACGGGAGAGAG	.	86	9	100	0	.	90	A	8329947	G	A	8329947	3	1	137	1	0	0	0	0	1	0	0	0	18105	1174	41	3	689	3	ZNF705A	12	8329947	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10		8329947	125521948	75	17265											
INHBE	83729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57849890	57849890	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INHBE	NM_031479	exon2	c.C312T	p.A104A	TTCAGCCTACAGC	.	98	6	69	0	.	577	T	57849890	C	T	57849890	2	4	137	1	0	0	0	0	0	0	0	1	7744	668	24	3		3	INHBE	12	57849890	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	49519943	57849890	76002005	76	17266											
PIP4K2C	79837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57985226	57985226	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIP4K2C	NM_001146258	exon1	c.C154T	p.L52L	GTGTTCCTGTGGG	.	201	90	222	0	.	689	T	57985226	C	T	57985226	2	4	137	1	0	0	0	0	0	0	0	1	11938	680	24	3		3	PIP4K2C	12	57985226	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	135336	57985226	75866669	77	17267											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120602471	120602471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GCN1L1	NM_006836	exon17	c.G1667T	p.R556I	GTGAGTCTATGCG	.	175	13	193	0	.	94	A	120602471	C	A	120602471	3	1	137	1	0	0	0	0	1	0	0	0	6299	913	32	3	6516	3	GCN1L1	12	120602471	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	62617245	120602471	13249424	78	17268											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	129559354	129559354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM132D	NM_133448	exon9	c.G2366A	p.G789E	GCCGTTCCAACAG	.	323	25	371	0	.	106	T	129559354	C	T	129559354	3	4	137	1	0	0	0	0	1	0	0	0	16044	855	30	3	937	3	TMEM132D	12	129559354	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	8956883	129559354	4292541	79	17269											
KLHL1	57626	broad.mit.edu;bcgsc.ca	37	13	70456494	70456494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHL1	NM_020866	exon5	c.T1148G	p.V383G	TACTTGACCCACA	.	266	12	200	2	.	90	C	70456494	A	C	70456494	3	2	137	1	0	0	0	0	1	0	0	0	8365	275	10	5	1126	5	KLHL1	13	70456494	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10		70456494	44713384	80	17270											
POU4F1	5457	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	79175687	79175687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POU4F1	NM_006237	exon2	c.G1123A	p.A375T	GCACGGCGAAGTA	.	29	5	66	0	.	515	T	79175687	C	T	79175687	3	4	137	1	0	0	0	0	1	0	0	0	12278	768	27	1	140	1	POU4F1	13	79175687	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	8719193	79175687	35994191	81	17271											
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454076	84454076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLITRK1	NM_052910	exon1	c.C1567A	p.Q523K	CTATCTGGATGAT	.	142	29	96	0	.	94	T	84454076	G	T	84454076	3	4	137	1	0	0	0	0	1	0	0	0	14742	1357	47	3	527	3	SLITRK1	13	84454076	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	5278389	84454076	30715802	82	17272											
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114277525	114277525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TFDP1	NM_007111	exon4	c.C110T	p.S37F	ACCCCTCCACCGT	.	196	53	119	0	.	416	T	114277525	C	T	114277525	3	4	137	1	0	0	0	0	1	0	0	0	15794	855	30	3	120	3	TFDP1	13	114277525	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	29823449	114277525	892353	83	17273											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21821900	21821902	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SUPT16H	NM_007192	exon24	c.2880_2882del	p.960_961del	TCACTGTCCTCCT	.	248	39	213	0	.	90	-	21821902	TCC	-	21821900	7	5	137	1	0	1	0	1	0	0	0	0	15393	1667	58	0	273	0	SUPT16H	14	21821900	In_Frame_Del	DEL	TCC	TCGA-FV-A496-01A-11D-A25V-10		21821900	85527640	84	17274											
CFL2	1073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35182517	35182517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CFL2	NM_021914	exon2	c.A254G	p.Y85C	GCATCGTACAAAG	.	118	62	94	0	.	289	C	35182517	T	C	35182517	3	2	137	1	0	0	0	0	1	0	0	0	3291	1638	57	2	258	2	CFL2	14	35182517	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	13360617	35182517	72167023	85	17275											
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44975318	44975318	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FSCB	NM_032135	exon1	c.C873A	p.V291V	TACTTGGACATGG	.	41	5	45	0	.	587	T	44975318	G	T	44975318	2	4	137	1	0	0	0	0	0	0	0	1	6066	1161	41	3		3	FSCB	14	44975318	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	9792801	44975318	62374222	86	17276											
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	61186834	61186834	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SIX4	NM_017420	exon2	c.C1193G	p.S398X	ATGTTTGATGACA	.	160	31	143	0	.	154	C	61186834	G	C	61186834	4	2	137	1	0	0	0	0	0	1	0	0	14349	1294	45	4	1160	4	SIX4	14	61186834	Nonsense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	16211516	61186834	46162706	87	17277											
EIF2B2	8892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75471535	75471535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EIF2B2	NM_014239	exon4	c.T529G	p.F177V	GAGGCCTTCCTCA	.	89	21	48	0	.	91	G	75471535	T	G	75471535	3	3	137	1	0	0	0	0	1	0	0	0	5001	1609	56	5	543	5	EIF2B2	14	75471535	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	14284701	75471535	31878005	88	17278											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101349498	101349498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RTL1	NM_001134888	exon1	c.C1628T	p.A543V	TCTAGGGCAATGC	.	189	36	161	0	.	46	A	101349498	G	A	101349498	3	1	137	1	0	0	0	0	1	0	0	0	13724	1203	42	3	2452	3	RTL1	14	101349498	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	25877963	101349498	6000042	89	17279											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414938	105414938	+	Missense_Mutation	SNP	C	C	T	rs112406618		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AHNAK2	NM_138420	exon7	c.G6850A	p.V2284M	CCTCCACGCTGGG	.	446	57	227	0	C|0.500;T|0.500	47	T	105414938	C	T	105414938	3	4	137	1	0	0	0	0	1	0	0	0	415	536	19	1	10541	1	AHNAK2	14	105414938	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	4065440	105414938	1934602	90	17280											
ADAL	161823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43643144	43643144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADAL	NM_001159280	exon11	c.T697C	p.C233R	GAACTCTGTTTGA	.	116	38	212	0	.	90	C	43643144	T	C	43643144	3	2	137	1	0	0	0	0	1	0	0	0	233	1580	55	2	844	2	ADAL	15	43643144	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10		43643144	58888248	91	17281											
MSLN	10232	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	815541	815541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MSLN	NM_005823	exon10	c.G719T	p.W240L	CGACATGGTCTGT	.	40	4	78	0	.	91	T	815541	G	T	815541	3	4	137	1	0	0	0	0	1	0	0	0	9881	1357	47	3	749	3	MSLN	16	815541	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10		815541	89539212	92	17282											
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	9000399	9000399	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	USP7	NM_003470	exon13	c.C1312T	p.Q438X	TTTTTTGCAAAAA	.	40	22	39	0	.	661	A	9000399	G	A	9000399	4	1	137	1	0	0	0	0	0	1	0	0	17085	1328	46	3	2072	3	USP7	16	9000399	Nonsense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	8184858	9000399	81354354	93	17283											
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23409377	23409377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	COG7	NM_153603	exon14	c.A1877G	p.Y626C	CTGATGTACTCGA	.	163	37	144	1	.	90	C	23409377	T	C	23409377	3	2	137	1	0	0	0	0	1	0	0	0	3663	1638	57	2	451	2	COG7	16	23409377	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	14408978	23409377	66945376	94	17284											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419146	31419146	+	Silent	SNP	G	G	A	rs141660381		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ITGAD	NM_005353	exon9	c.G918A	p.A306A	CTCAGCGCCTCCG	.	167	33	124	0	G|1.000;A|0.000	226	A	31419146	G	A	31419146	2	1	137	1	0	0	0	0	0	0	0	1	7884	1074	38	1		1	ITGAD	16	31419146	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	8009769	31419146	58935607	95	17285											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61687728	61687728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CDH8	NM_001796	exon12	c.G2184C	p.R728S	ATGCAGCCTTACA	.	58	8	63	0	.	161	G	61687728	C	G	61687728	3	3	137	1	0	0	0	0	1	0	0	0	3116	738	26	4	219	4	CDH8	16	61687728	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	30268582	61687728	28667025	96	17286											
PDPR	55066	broad.mit.edu;mdanderson.org	37	16	70165260	70165260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PDPR	NM_017990	exon8	c.C785G	p.A262G	TACATGCCTGCGA	.	96	16	119	0	.	135	G	70165260	C	G	70165260	3	3	137	1	0	0	0	0	1	0	0	0	11689	739	26	4	807	4	PDPR	16	70165260	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	8477532	70165260	20189493	97	17287											
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83999421	83999421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OSGIN1	NM_182981	exon6	c.G1243A	p.D415N	GCAGTGGATCCTG	.	223	49	252	0	.	68	A	83999421	G	A	83999421	3	1	137	1	0	0	0	0	1	0	0	0	11289	1174	41	3	1518	3	OSGIN1	16	83999421	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	13834161	83999421	6355332	98	17288											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7417050	7417070	+	In_Frame_Del	DEL	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POLR2A	NM_000937	exon29	c.5467_5487del	p.1823_1829del	AGCTCACCCAGCT	.	128	37	208	0	.	91	-	7417070	CCCAGCTACAGCCCCAGCTCG	-	7417050	7	5	137	1	0	1	0	1	0	0	0	0	12214	507	18	0	5581	0	POLR2A	17	7417050	In_Frame_Del	DEL	CCCAGCTACAGCCCCAGCTCG	TCGA-FV-A496-01A-11D-A25V-10		7417050	73778160	99	17289											
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	17	7579380	7579380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	TP53,NS,carcinoma,+2	TP53	NM_000546	exon4	c.307delT	p.Y103fs	CCTGGTAGGTTTT	.	86	73	153	2	.	70225	-	7579380	A	-	7579380	7	5	137	1	0	1	0	1	0	0	0	0	16378	420	15	0	995	0	TP53	17	7579380	Frame_Shift_Del	DEL	A	TCGA-FV-A496-01A-11D-A25V-10	162330	7579380	73615830	100	17290											
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12655884	12655884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYOCD	NM_001146312	exon10	c.C1279A	p.P427T	GTCACACCCAACA	.	125	32	108	0	.	93	A	12655884	C	A	12655884	3	1	137	1	0	0	0	0	1	0	0	0	10087	507	18	3	1317	3	MYOCD	17	12655884	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	5076504	12655884	68539326	101	17291											
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18154288	18154288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FLII	NM_002018	exon14	c.A1640G	p.Y547C	ATCCAGTAGTAGA	.	211	26	223	0	.	91	C	18154288	T	C	18154288	3	2	137	1	0	0	0	0	1	0	0	0	5925	1638	57	2	2237	2	FLII	17	18154288	Missense_Mutation	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	5498404	18154288	63040922	102	17292											
GPR179	440435	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36485933	36485933	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPR179	NM_001004334	exon11	c.C3519T	p.S1173S	TTCCCTGCTGCCC	.	182	42	151	1	.	93	A	36485933	G	A	36485933	2	1	137	1	0	0	0	0	0	0	0	1	6674	1310	46	3		3	GPR179	17	36485933	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	18331645	36485933	44709277	103	17293											
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37922298	37922298	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	IKZF3	NM_012481	exon8	c.C1275T	p.Y425Y	GAGTTCGTAAGAG	.	132	27	130	0	.	971	A	37922298	G	A	37922298	2	1	137	1	0	0	0	0	0	0	0	1	7616	1140	40	1		1	IKZF3	17	37922298	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1436365	37922298	43272912	104	17294											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40028400	40028400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ACLY	NM_001096	exon24	c.G2678A	p.C893Y	ATCAGACACATCT	.	112	21	113	0	.	228	T	40028400	C	T	40028400	3	4	137	1	0	0	0	0	1	0	0	0	143	478	17	3	651	3	ACLY	17	40028400	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	2106102	40028400	41166810	105	17295											
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48601116	48601116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYCBPAP	NM_032133	exon12	c.G1735A	p.V579I	CAGGACGTTTTTG	.	99	54	111	0	.	230	A	48601116	G	A	48601116	3	1	137	1	0	0	0	0	1	0	0	0	10019	1145	40	1	1781	1	MYCBPAP	17	48601116	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	8572716	48601116	32594094	106	17296											
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48823123	48823123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LUC7L3	NM_006107	exon8	c.C736T	p.R246C	GATGAGCGTCTAA	.	73	13	58	0	.	90	T	48823123	C	T	48823123	3	4	137	1	0	0	0	0	1	0	0	0	9084	768	27	1	766	1	LUC7L3	17	48823123	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	222007	48823123	32372087	107	17297											
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60493468	60493468	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EFCAB3	NM_001144933	exon12	c.C1251T	p.D417D	GATGGACTCTAGA	.	190	44	107	0	.	227	T	60493468	C	T	60493468	2	4	137	1	0	0	0	0	0	0	0	1	4935	564	20	3		3	EFCAB3	17	60493468	Silent	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	11670345	60493468	20701742	108	17298											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67300830	67300830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA5	NM_018672	exon6	c.T910A	p.F304I	AAAGGAAAAAAAG	.	113	41	57	0	.	93	T	67300830	A	T	67300830	3	4	137	1	0	0	0	0	1	0	0	0	35	14	1	4	4150	4	ABCA5	17	67300830	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	6807362	67300830	13894380	109	17299											
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74625422	74625422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ST6GALNAC1	NM_018414	exon2	c.G503T	p.G168V	TGGCCCCCATTTC	.	439	32	269	0	.	90	A	74625422	C	A	74625422	3	1	137	1	0	0	0	0	1	0	0	0	15222	623	22	3	1331	3	ST6GALNAC1	17	74625422	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	7324592	74625422	6569788	110	17300											
ZNF490	57474	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12692141	12692141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF490	NM_020714	exon5	c.T748A	p.Y250N	ATTCATAGGGTGT	.	63	20	75	1	.	90	T	12692141	A	T	12692141	3	4	137	1	0	0	0	0	1	0	0	0	17938	420	15	4	845	4	ZNF490	19	12692141	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10		12692141	46436842	111	17301											
DNAJB1	3337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14629102	14629102	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DNAJB1	NM_006145	exon1	c.C60T	p.I20I	CCGCTTGATCTCC	.	28	20	26	0	.	650	A	14629102	G	A	14629102	2	1	137	1	0	0	0	0	0	0	0	1	4615	1280	45	3		3	DNAJB1	19	14629102	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1936961	14629102	44499881	112	17302											
NDUFA13	51079	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19626948	19626948	+	Silent	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NDUFA13	.	.	.	.	CTTCCTAGCCGTG	.	184	88	176	0	.	650	C	19626948	A	C	19626948	2	2	137	1	0	0	0	0	0	0	0	1	10263	435	15	5		5	NDUFA13	19	19626948	Silent	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	4997846	19626948	39502035	113	17303											
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34687544	34687544	+	Silent	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LSM14A	NM_001114093	exon3	c.A291G	p.S97S	GTCCTCACTAGGC	.	137	63	166	0	.	91	G	34687544	A	G	34687544	2	3	137	1	0	0	0	0	0	0	0	1	9054	146	6	2		2	LSM14A	19	34687544	Silent	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	15060596	34687544	24441439	114	17304											
MAG	4099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35800859	35800859	+	Silent	SNP	G	G	C	rs111518896	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MAG	NM_080600	exon8	c.G1314C	p.P438P	CAACCCGGAGCCG	.	27	11	50	1	G|1.000;A|0.000	947	C	35800859	G	C	35800859	2	2	137	1	0	0	0	0	0	0	0	1	9162	1103	39	4		4	MAG	19	35800859	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	1113315	35800859	23328124	115	17305											
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38912788	38912788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RASGRP4	NM_001146206	exon2	c.C29T	p.S10F	TGGTGGGACTTCC	.	112	6	93	0	.	660	A	38912788	G	A	38912788	3	1	137	1	0	0	0	0	1	0	0	0	13077	1174	41	3	2056	3	RASGRP4	19	38912788	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	3111929	38912788	20216195	116	17306											
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41387953	41387953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP2A7	NM_000764	exon1	c.T163A	p.C55S	AGTCACATATGTG	.	290	131	264	0	.	93	T	41387953	A	T	41387953	3	4	137	1	0	0	0	0	1	0	0	0	4163	217	8	4	1367	4	CYP2A7	19	41387953	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	2475165	41387953	17741030	117	17307											
CABP5	56344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48543934	48543934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CABP5	NM_019855	exon3	c.C166G	p.L56V	TCATGAGATTCCC	.	240	30	148	0	.	91	C	48543934	G	C	48543934	3	2	137	1	0	0	0	0	1	0	0	0	2534	942	33	4	371	4	CABP5	19	48543934	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	7155981	48543934	10585049	118	17308											
PRKCG	5582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54407908	54407908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PRKCG	NM_002739	exon16	c.A1676T	p.D559V	GGGAGGACGAGGA	.	148	16	119	1	.	1367	T	54407908	A	T	54407908	3	4	137	1	0	0	0	0	1	0	0	0	12512	275	10	4	1738	4	PRKCG	19	54407908	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	5863974	54407908	4721075	119	17309											
LILRA2	11027	ucsc.edu;bcgsc.ca	37	19	55086870	55086870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LILRA2	NM_001130917	exon5	c.G803T	p.G268V	GCCCTGGTTGGCA	.	257	57	192	2	.	91	T	55086870	G	T	55086870	3	4	137	1	0	0	0	0	1	0	0	0	8785	1261	44	3	821	3	LILRA2	19	55086870	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	678962	55086870	4042113	120	17310											
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58264871	58264871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G373A	p.D125N	TTGGATGACGATG	.	106	20	84	0	.	91	A	58264871	G	A	58264871	3	1	137	1	0	0	0	0	1	0	0	0	18146	1290	45	3	383	3	ZNF776	19	58264871	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	3178001	58264871	864112	121	17311											
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58265306	58265306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G808A	p.D270N	CAATGTGATGAAT	.	82	10	68	0	.	91	A	58265306	G	A	58265306	3	1	137	1	0	0	0	0	1	0	0	0	18146	1290	45	3	818	3	ZNF776	19	58265306	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	435	58265306	863677	122	17312											
ZNF584	201514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58929119	58929119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF584	NM_173548	exon4	c.G1234A	p.D412N	CAGGAGGACAGGG	.	249	33	168	2	.	90	A	58929119	G	A	58929119	3	1	137	1	0	0	0	0	1	0	0	0	18013	1174	41	3	1248	3	ZNF584	19	58929119	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	663813	58929119	199864	123	17313											
HSPA12B	116835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3728929	3728929	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HSPA12B	NM_052970	exon8	c.G741A	p.S247S	CGCCTCGGTATAC	.	83	17	78	0	.	226	A	3728929	G	A	3728929	2	1	137	1	0	0	0	0	0	0	0	1	7405	1103	39	1		1	HSPA12B	20	3728929	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10		3728929	59296591	124	17314											
RBM12	10137	hgsc.bcm.edu;broad.mit.edu	37	20	34241969	34241969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RBM12	NM_001198840	exon2	c.C1276A	p.H426N	CCTCATGTGGTGA	.	77	4	75	0	.	93	T	34241969	G	T	34241969	3	4	137	1	0	0	0	0	1	0	0	0	13113	1377	48	3	1526	3	RBM12	20	34241969	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	30513040	34241969	28783551	125	17315											
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35219383	35219383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TGIF2	NM_021809	exon3	c.C263T	p.P88L	AAGACCCTAATCA	.	97	47	86	0	.	92	T	35219383	C	T	35219383	3	4	137	1	0	0	0	0	1	0	0	0	15823	681	24	3	269	3	TGIF2	20	35219383	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	977414	35219383	27806137	126	17316											
ZNF335	63925	broad.mit.edu;bcgsc.ca	37	20	44588920	44588920	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF335	NM_022095	exon14	c.C1947T	p.F649F	GCATTTGAAGGGC	.	180	10	173	1	.	94	A	44588920	G	A	44588920	2	1	137	1	0	0	0	0	0	0	0	1	17849	1281	45	3		3	ZNF335	20	44588920	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	9369537	44588920	18436600	127	17317											
PREX1	57580	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47249156	47249156	+	Missense_Mutation	SNP	A	A	G	rs200234810		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PREX1	NM_020820	exon34	c.T4289C	p.I1430T	CCCTCAATGTGGT	.	109	36	102	0	A|0.999;G|0.001	231	G	47249156	A	G	47249156	3	3	137	1	0	0	0	0	1	0	0	0	12476	101	4	2	718	2	PREX1	20	47249156	Missense_Mutation	SNP	A	TCGA-FV-A496-01A-11D-A25V-10	2660236	47249156	15776364	128	17318											
UFD1L	7353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19463069	19463069	+	Silent	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UFD1L	NM_005659	exon2	c.C60G	p.S20S	CTGTGTGGAGAAG	.	137	22	117	0	.	227	C	19463069	G	C	19463069	2	2	137	1	0	0	0	0	0	0	0	1	16932	1335	47	4		4	UFD1L	22	19463069	Silent	SNP	G	TCGA-FV-A496-01A-11D-A25V-10		19463069	31841497	129	17319											
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32756294	32756294	+	Missense_Mutation	SNP	C	C	A	rs143582852		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RFPL3	NM_001098535	exon2	c.C429A	p.D143E	TGACGACCTCAGG	.	348	81	288	0	C|1.000;A|0.000	91	A	32756294	C	A	32756294	3	1	137	1	0	0	0	0	1	0	0	0	13255	506	18	3	435	3	RFPL3	22	32756294	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10	13293225	32756294	18548272	130	17320											
SCUBE1	80274	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43654278	43654278	+	Missense_Mutation	SNP	G	G	T	rs73420094	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCUBE1	NM_173050	exon6	c.C674A	p.T225K	CCACACGTGGGGC	.	126	29	133	1	G|0.974;A|0.026	93	T	43654278	G	T	43654278	3	4	137	1	0	0	0	0	1	0	0	0	13944	1145	40	1	2360	1	SCUBE1	22	43654278	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	10897984	43654278	7650288	131	17321											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45939311	45939311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBLN1	NM_006487	exon11	c.G1226A	p.R409H	CCGGGCGCCTGTG	.	50	24	35	0	.	515	A	45939311	G	A	45939311	3	1	137	1	0	0	0	0	1	0	0	0	5698	1087	38	1	1268	1	FBLN1	22	45939311	Missense_Mutation	SNP	G	TCGA-FV-A496-01A-11D-A25V-10	2285033	45939311	5365255	132	17322											
MAGEE2	139599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75003421	75003421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MAGEE2	NM_138703	exon1	c.G1466A	p.R489K	CGCTTTCTGTAGA	.	126	47	266	2	.	132	T	75003421	C	T	75003421	3	4	137	1	0	0	0	0	1	0	0	0	9186	913	32	3	109	3	MAGEE2	23	75003421	Missense_Mutation	SNP	C	TCGA-FV-A496-01A-11D-A25V-10		75003421	80267139	133	17323											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128349	83128349	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYLC1	NM_021118	exon4	c.T633A	p.T211T	AAACACTGAATTC	.	64	28	84	0	.	112	A	83128349	T	A	83128349	2	1	137	1	0	0	0	0	0	0	0	1	4141	1567	55	4		4	CYLC1	23	83128349	Silent	SNP	T	TCGA-FV-A496-01A-11D-A25V-10	8124928	83128349	72142211	134	17324											
CAPN6	827	hgsc.bcm.edu;bcgsc.ca	37	X	110497516	110497516	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAPN6	NM_014289	exon3	c.281delA	p.E94fs	TGAGACTCCTGAA	.	88	74	123	0	.	195	-	110497516	T	-	110497516	7	5	137	1	0	1	0	1	0	0	0	0	2630	1551	54	0	1688	0	CAPN6	23	110497516	Frame_Shift_Del	DEL	T	TCGA-FV-A496-01A-11D-A25V-10	27369167	110497516	44773044	135	17325											
ROR1	4919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	64624861	64624861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ROR1	NM_005012	exon8	c.G1372T	p.A458S	CTGAATGCATATA	.	97	43	120	1	.	1536	T	64624861	G	T	64624861	3	4	138	1	0	0	0	0	1	0	0	0	13526	1319	46	3	1410	3	ROR1	1	64624861	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		64624861	184625760	1	17326											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118629516	118629516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SPAG17	NM_206996	exon11	c.G1475T	p.C492F	GAGAGACAGAGTG	.	125	25	177	0	.	158	A	118629516	C	A	118629516	3	1	138	1	0	0	0	0	1	0	0	0	14979	478	17	3	5348	3	SPAG17	1	118629516	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	54004655	118629516	130621105	2	17327											
TARS2	80222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150461451	150461451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TARS2	NM_001271896	exon3	c.C275G	p.A92G	CACTGGCAGATAC	.	101	17	72	0	.	91	G	150461451	C	G	150461451	3	3	138	1	0	0	0	0	1	0	0	0	15557	710	25	4	285	4	TARS2	1	150461451	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	31831935	150461451	98789170	3	17328											
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152382192	152382192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CRNN	NM_016190	exon3	c.G1366C	p.D456H	CCTGGTCCAGCCT	.	321	33	225	0	.	93	G	152382192	C	G	152382192	3	3	138	1	0	0	0	0	1	0	0	0	3892	855	30	4	125	4	CRNN	1	152382192	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	1920741	152382192	96868429	4	17329											
DEDD	9191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161091967	161091967	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DEDD	NM_001039711	exon5	c.G927C	p.L309L	GTTCCTCAGGAGT	.	212	69	220	1	.	90	G	161091967	C	G	161091967	2	3	138	1	0	0	0	0	0	0	0	1	4384	813	29	4		4	DEDD	1	161091967	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	8709775	161091967	88158654	5	17330											
C1orf110	339512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162824806	162824806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_178550	exon4	c.G658T	p.G220W	TGTTCCCATCTGG	.	258	28	247	0	.	.	A	162824806	C	A	162824806	3	1	138	1	0	0	0	0	1	0	0	0	1983	594	21	3	254	3	C1orf110	1	162824806	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	1732839	162824806	86425815	6	17331											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	181725193	181725193	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CACNA1E	NM_001205293	exon29	c.4091delC	p.T1364fs	TGCTGACCCTCTT	.	163	62	150	0	.	95	-	181725193	C	-	181725193	7	5	138	1	0	1	0	1	0	0	0	0	2542	507	18	0	4205	0	CACNA1E	1	181725193	Frame_Shift_Del	DEL	C	TCGA-FV-A4ZP-01A-12D-A25V-10	18900387	181725193	67525428	7	17332											
DHX9	1660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182852766	182852766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DHX9	NM_001357	exon26	c.G3256A	p.D1086N	GTAGATGACTGGT	.	111	31	118	1	.	92	A	182852766	G	A	182852766	3	1	138	1	0	0	0	0	1	0	0	0	4516	1290	45	3	3354	3	DHX9	1	182852766	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	1127573	182852766	66397855	8	17333											
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201291111	201291111	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PKP1	NM_000299	exon9	c.G1416A	p.V472V	GTCTGTGGAAAAC	.	113	18	119	0	.	92	A	201291111	G	A	201291111	2	1	138	1	0	0	0	0	0	0	0	1	11984	1335	47	3		3	PKP1	1	201291111	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	18438345	201291111	47959510	9	17334											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216173842	216173842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	USH2A	NM_206933	exon33	c.A6388G	p.N2130D	AACTGTTTGTACA	.	174	22	161	1	.	115	C	216173842	T	C	216173842	3	2	138	1	0	0	0	0	1	0	0	0	17033	1841	64	2	9380	2	USH2A	1	216173842	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	14882731	216173842	33076779	10	17335											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216373074	216373074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	USH2A	NM_007123	exon17	c.G3706C	p.V1236L	TGGTCACTGTAAT	.	99	41	108	1	.	115	G	216373074	C	G	216373074	3	3	138	1	0	0	0	0	1	0	0	0	17033	565	20	4	12140	4	USH2A	1	216373074	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	199232	216373074	32877547	11	17336											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231858293	231858293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DISC1	NM_001164550	exon5	c.A1252G	p.N418D	GGAACCAATTGCT	.	125	12	121	0	.	91	G	231858293	A	G	231858293	3	3	138	1	0	0	0	0	1	0	0	0	4538	130	5	2	1332	2	DISC1	1	231858293	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	15485219	231858293	17392328	12	17337											
GREB1	9687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11752722	11752722	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GREB1	NM_014668	exon19	c.G3108A	p.G1036G	GCATGGGGAGTCC	.	174	39	199	1	.	91	A	11752722	G	A	11752722	2	1	138	1	0	0	0	0	0	0	0	1	6760	1219	43	3		3	GREB1	2	11752722	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		11752722	231446651	13	17338											
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48925801	48925801	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LHCGR	NM_000233	exon9	c.G819A	p.L273L	GTAAGTCAACGTG	.	64	5	74	0	.	589	T	48925801	C	T	48925801	2	4	138	1	0	0	0	0	0	0	0	1	8762	825	29	3		3	LHCGR	2	48925801	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	37173079	48925801	194273572	14	17339											
MAP2	4133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210574887	210574887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MAP2	NM_002374	exon12	c.G4982A	p.R1661Q	AGCTTCGGCTTAT	.	150	21	171	1	.	591	A	210574887	G	A	210574887	3	1	138	1	0	0	0	0	1	0	0	0	9235	1116	39	1	5191	1	MAP2	2	210574887	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	161649086	210574887	32624486	15	17340											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216249663	216249663	+	Missense_Mutation	SNP	G	G	T	rs202245868	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FN1	NM_212482	exon29	c.C4649A	p.A1550E	GGGGTCGCAGCAA	.	348	42	377	0	G|0.999;A|0.000	584	T	216249663	G	T	216249663	3	4	138	1	0	0	0	0	1	0	0	0	5962	1087	38	1	2856	1	FN1	2	216249663	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	5674776	216249663	26949710	16	17341											
AGFG1	3267	broad.mit.edu;bcgsc.ca	37	2	228389469	228389487	+	Frame_Shift_Del	DEL	GGTTTGTAGTCCCCAGTTG	GGTTTGTAGTCCCCAGTTG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	GGTTTGTAGTCCCCAGTTG	GGTTTGTAGTCCCCAGTTG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	AGFG1	NM_004504	exon5	c.541_550del	p.181_184del	ATATGTGGTTTGT	.	74	9	73	0	.	228	-	228389487	GGTTTGTAGTCCCCAGTTG	-	228389469	7	5	138	1	0	1	0	1	0	0	0	0	380	1363	47	0		0	AGFG1	2	228389469	Frame_Shift_Del	DEL	GGTTTGTAGTCCCCAGTTG	TCGA-FV-A4ZP-01A-12D-A25V-10	12139806	228389469	14809904	17	17342											
ECEL1	9427	ucsc.edu;bcgsc.ca	37	2	233348748	233348748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ECEL1	NM_004826	exon7	c.T1370A	p.F457Y	TGTACAAAGAGGG	.	439	152	378	2	.	90	T	233348748	A	T	233348748	3	4	138	1	0	0	0	0	1	0	0	0	4891	14	1	4	1005	4	ECEL1	2	233348748	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	4959279	233348748	9850625	18	17343											
CRBN	51185	broad.mit.edu;bcgsc.ca	37	3	3221334	3221334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CRBN	NM_001173482	exon1	c.A38G	p.N13S	CCCATGTTGTGCG	.	182	69	166	2	.	91	C	3221334	T	C	3221334	3	2	138	1	0	0	0	0	1	0	0	0	3851	1725	60	2	1334	2	CRBN	3	3221334	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10		3221334	194801096	19	17344											
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12859283	12859283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CAND2	NM_001162499	exon10	c.G2852T	p.G951V	AGGAGGGCACCCG	.	68	10	90	0	.	72	T	12859283	G	T	12859283	3	4	138	1	0	0	0	0	1	0	0	0	2616	1203	42	3	2890	3	CAND2	3	12859283	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	9637949	12859283	185163147	20	17345											
SATB1	6304	ucsc.edu;bcgsc.ca	37	3	18390856	18390856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SATB1	NM_001195470	exon12	c.C2194G	p.L732V	GCTTGAGATAGTA	.	183	31	175	2	.	228	C	18390856	G	C	18390856	3	2	138	1	0	0	0	0	1	0	0	0	13853	942	33	4	197	4	SATB1	3	18390856	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	5531573	18390856	179631574	21	17346											
SACM1L	22908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45754687	45754687	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SACM1L	NM_014016	exon6	c.A542T	p.E181V	AGCCAGAGGTAAT	.	18	7	21	0	.	91	T	45754687	A	T	45754687	3	4	138	1	0	0	0	0	1	0	0	0	13803	318	11	4	564	4	SACM1L	3	45754687	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	27363831	45754687	152267743	22	17347											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108127246	108127246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYH15	NM_014981	exon33	c.A4561C	p.I1521L	TAGAAATCTCTTC	.	108	25	88	0	.	73	G	108127246	T	G	108127246	3	3	138	1	0	0	0	0	1	0	0	0	10034	1435	50	5	1319	5	MYH15	3	108127246	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	62372559	108127246	89895184	23	17348											
TRH	7200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129695783	129695783	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRH	NM_007117	exon3	c.G453T	p.R151R	GAAGCGGCAGCAC	.	142	50	131	1	.	91	T	129695783	G	T	129695783	2	4	138	1	0	0	0	0	0	0	0	1	16475	1190	42	3		3	TRH	3	129695783	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	21568537	129695783	68326647	24	17349											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57164398	57164398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA1211	NM_020722	exon4	c.G3A	p.M1I	TTCTATGGGAACC	.	64	12	84	0	.	70	A	57164398	G	A	57164398	3	1	138	1	0	0	0	0	1	0	0	0	8215	1348	47	3	5	3	KIAA1211	4	57164398	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		57164398	133989878	25	17350											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57181429	57181429	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA1211	NM_020722	exon8	c.G1761A	p.S587S	ACCGTCGTCCCTG	.	32	14	24	0	.	70	A	57181429	G	A	57181429	2	1	138	1	0	0	0	0	0	0	0	1	8215	1132	40	1		1	KIAA1211	4	57181429	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	17031	57181429	133972847	26	17351											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62599267	62599267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LPHN3	NM_015236	exon5	c.G1190T	p.R397I	ATAGTAGATCAGG	.	113	13	142	0	.	508	T	62599267	G	T	62599267	3	4	138	1	0	0	0	0	1	0	0	0	8917	942	33	3	1208	3	LPHN3	4	62599267	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	5417838	62599267	128555009	27	17352											
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	84222134	84222134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	HPSE	NM_001098540	exon11	c.G1451A	p.G484E	TGAGGTCCCAAAG	.	70	15	88	0	.	227	T	84222134	C	T	84222134	3	4	138	1	0	0	0	0	1	0	0	0	7344	855	30	3	188	3	HPSE	4	84222134	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	21622867	84222134	106932142	28	17353											
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	104511152	104511152	+	Splice_Site	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TACR3	NM_001059	exon6	c.1086-1G>C	.	CGAAATCTGAGGA	.	77	14	105	0	.	525	G	104511152	C	G	104511152	5	3	138	1	0	0	0	0	0	0	1	0	15504	927	32	4	316	4	TACR3	4	104511152	Splice_Site	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	20289018	104511152	86643124	29	17354											
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	118005773	118005789	+	Frame_Shift_Del	DEL	CAAGATAAACACAATGG	CAAGATAAACACAATGG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	CAAGATAAACACAATGG	CAAGATAAACACAATGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRAM1L1	NM_152402	exon1	c.761_777del	p.254_259del	TCTACCCAAGATA	.	60	14	116	0	.	90	-	118005789	CAAGATAAACACAATGG	-	118005773	7	5	138	1	0	1	0	1	0	0	0	0	16449	593	21	0	336	0	TRAM1L1	4	118005773	Frame_Shift_Del	DEL	CAAGATAAACACAATGG	TCGA-FV-A4ZP-01A-12D-A25V-10	13494621	118005773	73148503	30	17355											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37176032	37176032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C5orf42	NM_023073	exon31	c.A5957G	p.D1986G	CTCGTATCTACTT	.	141	21	82	0	.	94	C	37176032	T	C	37176032	3	2	138	1	0	0	0	0	1	0	0	0	2301	1435	50	2	3724	2	C5orf42	5	37176032	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10		37176032	143739228	31	17356											
ST8SIA4	7903	ucsc.edu;bcgsc.ca	37	5	100191909	100191909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ST8SIA4	NM_005668	exon4	c.G695T	p.G232V	TCTCCTCCTTTGA	.	144	56	214	2	.	153	A	100191909	C	A	100191909	3	1	138	1	0	0	0	0	1	0	0	0	15233	855	30	3	392	3	ST8SIA4	5	100191909	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	63015877	100191909	80723351	32	17357											
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140745937	140745937	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PCDHGA5	NM_032054	exon1	c.C2040A	p.T680T	CAAGACCCCCATT	.	191	40	174	0	.	35	A	140745937	C	A	140745937	2	1	138	1	0	0	0	0	0	0	0	1	11557	610	22	3		3	PCDHGA5	5	140745937	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	40554028	140745937	40169323	33	17358											
BEND3	57673	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107391665	107391665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	BEND3	NM_001080450	exon5	c.C730T	p.P244S	ACTCAGGGGGCGG	.	145	72	136	1	.	71	A	107391665	G	A	107391665	3	1	138	1	0	0	0	0	1	0	0	0	1399	1232	43	3	1760	3	BEND3	6	107391665	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		107391665	63723402	34	17359											
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117113958	117113958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GPRC6A	NM_148963	exon6	c.A2128G	p.T710A	TGCAAGTGAAGAT	.	103	15	110	0	.	96	C	117113958	T	C	117113958	3	2	138	1	0	0	0	0	1	0	0	0	6728	1696	59	2	656	2	GPRC6A	6	117113958	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	9722293	117113958	54001109	35	17360											
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	128135050	128135051	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	.	.	.	p.P246T	GACTGGGGAGGAT	.	63	16	80	0	.	.	TT	128135051	GG	TT	128135050	3	4	138	1	0	0	0	0	1	0	0	0	15857	1232	43	3	1322	3	THEMIS	6	128135050	Missense_Mutation	DNP	GG	TCGA-FV-A4ZP-01A-12D-A25V-10	11021092	128135050	42980017	36	17361											
MRPL32	64983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42976921	42976921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MRPL32	NM_031903	exon3	c.A313G	p.N105D	TTAAAGAACAACA	.	251	67	167	0	.	90	G	42976921	A	G	42976921	3	3	138	1	0	0	0	0	1	0	0	0	9795	260	9	2	323	2	MRPL32	7	42976921	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10		42976921	116161742	37	17362											
ABCB4	5244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87051507	87051507	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ABCB4	NM_018850	exon18	c.A2246T	p.Q749L	CACTTCTGCTGCT	.	543	80	249	1	.	96	A	87051507	T	A	87051507	3	1	138	1	0	0	0	0	1	0	0	0	43	1580	55	4	1658	4	ABCB4	7	87051507	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	44074586	87051507	72087156	38	17363											
ABCB1	5243	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	87170675	87170675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ABCB1	NM_000927	exon19	c.C2317A	p.Q773K	TTACCTGAAGGAA	.	24	4	16	0	.	582	T	87170675	G	T	87170675	3	4	138	1	0	0	0	0	1	0	0	0	40	1299	45	3	1569	3	ABCB1	7	87170675	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	119168	87170675	71967988	39	17364											
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157959802	157959802	+	Missense_Mutation	SNP	G	G	A	rs139278439	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PTPRN2	NM_130843	exon6	c.C731T	p.A244V	AGGGCCGCCATCA	.	78	34	65	0	G|0.999;T|0.000	295	A	157959802	G	A	157959802	3	1	138	1	0	0	0	0	1	0	0	0	12808	1087	38	1	2388	1	PTPRN2	7	157959802	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	70789127	157959802	1178861	40	17365											
TOX	9760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59750851	59750851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TOX	NM_014729	exon5	c.G713A	p.R238Q	GCAGGCCGCTTCT	.	37	5	22	0	.	227	T	59750851	C	T	59750851	3	4	138	1	0	0	0	0	1	0	0	0	16374	652	23	1	887	1	TOX	8	59750851	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		59750851	86613171	41	17366											
RALYL	138046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	85799965	85799965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RALYL	NM_001100391	exon8	c.C851T	p.T284I	AGATGACAGATGG	.	278	18	135	0	.	23	T	85799965	C	T	85799965	3	4	138	1	0	0	0	0	1	0	0	0	13020	478	17	3	881	3	RALYL	8	85799965	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	26049114	85799965	60564057	42	17367			1	15		2	2	26	N	T_C	7.833209e-05
RALYL	138046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	85799990	85799990	+	Silent	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RALYL	NM_001100391	exon8	c.T876C	p.D292D	CTTCGATGAAGAT	.	229	37	109	1	.	23	C	85799990	T	C	85799990	2	2	138	1	0	0	0	0	0	0	0	1	13020	1461	51	2		2	RALYL	8	85799990	Silent	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	25	85799990	60564032	43	17368			1	15		2	2	26	N	T_C	7.833209e-05
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74355033	74355033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TMEM2	NM_001135820	exon5	c.T1150C	p.Y384H	CAGTATAAAATTC	.	85	21	88	0	.	92	G	74355033	A	G	74355033	3	3	138	1	0	0	0	0	1	0	0	0	16118	362	13	2	3081	2	TMEM2	9	74355033	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10		74355033	66858398	44	17369											
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101608380	101608380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GALNT12	NM_024642	exon9	c.A1580G	p.E527G	CCCCAGAGAATCA	.	252	44	257	0	.	92	G	101608380	A	G	101608380	3	3	138	1	0	0	0	0	1	0	0	0	6210	304	11	2	1614	2	GALNT12	9	101608380	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	27253347	101608380	39605051	45	17370											
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475751	120475751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TLR4	NM_138554	exon3	c.C1345T	p.L449F	AGAAACCTCATTT	.	83	11	123	0	.	577	T	120475751	C	T	120475751	3	4	138	1	0	0	0	0	1	0	0	0	15950	681	24	3	1355	3	TLR4	9	120475751	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	18867371	120475751	20737680	46	17371											
ZBTB43	23099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595854	129595854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZBTB43	NM_001135776	exon2	c.G1066A	p.G356R	GTAACAGGGATTA	.	55	14	55	1	.	91	A	129595854	G	A	129595854	3	1	138	1	0	0	0	0	1	0	0	0	17541	1000	35	3	1068	3	ZBTB43	9	129595854	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	9120103	129595854	11617577	47	17372											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	37442511	37442511	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ANKRD30A	NM_052997	exon13	c.G1551A	p.E517E	CTGTGAGACTGTT	.	900	66	886	0	.	161	A	37442511	G	A	37442511	2	1	138	1	0	0	0	0	0	0	0	1	658	933	33	3		3	ANKRD30A	10	37442511	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		37442511	98092236	48	17373											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63851583	63851583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARID5B	NM_032199	exon10	c.C2361A	p.S787R	CTGCAGCTTCTCC	.	96	16	98	0	.	94	A	63851583	C	A	63851583	3	1	138	1	0	0	0	0	1	0	0	0	922	796	28	3	2399	3	ARID5B	10	63851583	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	26409072	63851583	71683164	49	17374											
LRIT1	26103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	86001094	86001094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LRIT1	NM_015613	exon1	c.G102T	p.M34I	ATCACCCATGATA	.	181	70	153	0	.	90	A	86001094	C	A	86001094	3	1	138	1	0	0	0	0	1	0	0	0	8947	594	21	3	1785	3	LRIT1	10	86001094	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	22149511	86001094	49533653	50	17375											
CHUK	1147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101953098	101953098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CHUK	NM_001278	exon19	c.G2065A	p.E689K	CATGTTCTGCTGA	.	119	24	115	0	.	961	T	101953098	C	T	101953098	3	4	138	1	0	0	0	0	1	0	0	0	3416	922	32	3	184	3	CHUK	10	101953098	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	15952004	101953098	33581649	51	17376											
CWF19L1	55280	ucsc.edu;bcgsc.ca	37	10	101996663	101996663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CWF19L1	NM_018294	exon12	c.G1318A	p.A440T	CCTGTGCCTGGGT	.	172	19	187	2	.	90	T	101996663	C	T	101996663	3	4	138	1	0	0	0	0	1	0	0	0	4071	739	26	3	310	3	CWF19L1	10	101996663	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	43565	101996663	33538084	52	17377											
OR51G1	79324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945247	4945247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OR51G1	NM_001005237	exon1	c.C323A	p.T108N	GACAAGGTGTGGA	.	88	42	100	1	.	70	T	4945247	G	T	4945247	3	4	138	1	0	0	0	0	1	0	0	0	11098	1261	44	3	644	3	OR51G1	11	4945247	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		4945247	130061269	53	17378											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6650989	6650989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DCHS1	NM_003737	exon11	c.A4949G	p.Q1650R	TGCTGCTGGAAAG	.	66	9	58	0	.	73	C	6650989	T	C	6650989	3	2	138	1	0	0	0	0	1	0	0	0	4287	1580	55	2	4991	2	DCHS1	11	6650989	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	1705742	6650989	128355527	54	17379											
ZNF214	7761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7021610	7021610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF214	NM_013249	exon3	c.T1304A	p.V435E	GTATGCACTCTCT	.	100	30	118	1	.	91	T	7021610	A	T	7021610	3	4	138	1	0	0	0	0	1	0	0	0	17767	159	6	4	520	4	ZNF214	11	7021610	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	370621	7021610	127984906	55	17380											
TEAD1	7003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12958680	12958680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TEAD1	NM_021961	exon13	c.G1192A	p.E398K	ACACAAGAAACTC	.	152	23	160	0	.	90	A	12958680	G	A	12958680	3	1	138	1	0	0	0	0	1	0	0	0	15735	943	33	3	1234	3	TEAD1	11	12958680	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	5937070	12958680	122047836	56	17381											
GLYATL1	92292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58722261	58722261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GLYATL1	NM_080661	exon5	c.G298A	p.D100N	GACATGGATTCAT	.	150	35	225	0	.	91	A	58722261	G	A	58722261	3	1	138	1	0	0	0	0	1	0	0	0	6480	1174	41	3	316	3	GLYATL1	11	58722261	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	45763581	58722261	76284255	57	17382											
FAT3	120114	ucsc.edu;mdanderson.org	37	11	92531022	92531022	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FAT3	NM_001008781	exon9	c.A4843T	p.K1615X	ATGTTTAAGATCG	.	177	42	212	2	.	73	T	92531022	A	T	92531022	4	4	138	1	0	0	0	0	0	1	0	0	5691	363	13	4	4877	4	FAT3	11	92531022	Nonsense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	33808761	92531022	42475494	58	17383											
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107663412	107663412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC35F2	NM_017515	exon8	c.A1054G	p.S352G	CAATGCTGGTGAC	.	79	20	120	0	.	90	C	107663412	T	C	107663412	3	2	138	1	0	0	0	0	1	0	0	0	14589	1580	55	2	74	2	SLC35F2	11	107663412	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10	15132390	107663412	27343104	59	17384											
SCN8A	6334	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52115518	52115518	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SCN8A	NM_014191	exon12	c.C1824T	p.R608R	GGCCCGCGAGCGC	.	15	9	20	0	.	29	T	52115518	C	T	52115518	2	4	138	1	0	0	0	0	0	0	0	1	13924	755	27	1		1	SCN8A	12	52115518	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		52115518	81736377	60	17385											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	62926222	62926222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MON2	NM_015026	exon12	c.G1405T	p.E469X	AGCTTAGAAATGT	.	124	19	122	0	.	514	T	62926222	G	T	62926222	4	4	138	1	0	0	0	0	0	1	0	0	9700	943	33	3	1451	3	MON2	12	62926222	Nonsense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	10810704	62926222	70925673	61	17386											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32914479	32914479	+	Missense_Mutation	SNP	C	C	G	rs80358834	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	BRCA2	NM_000059	exon11	c.C5987G	p.A1996G	AAAACGCAAGACA	.	56	22	66	0	.	3153	G	32914479	C	G	32914479	3	3	138	1	0	0	0	0	1	0	0	0	1499	710	25	4	6025	4	BRCA2	13	32914479	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		32914479	82255399	62	17387											
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58206732	58206732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PCDH17	NM_001040429	exon1	c.C52A	p.L18I	CTCACTCTCAAGA	.	98	23	103	0	.	97	A	58206732	C	A	58206732	3	1	138	1	0	0	0	0	1	0	0	0	11512	913	32	3	54	3	PCDH17	13	58206732	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	25292253	58206732	56963146	63	17388											
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76381696	76381696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LMO7	NM_015842	exon7	c.C578A	p.T193N	ATCCCACTTCTGG	.	84	39	86	0	.	586	A	76381696	C	A	76381696	3	1	138	1	0	0	0	0	1	0	0	0	8855	565	20	3	1475	3	LMO7	13	76381696	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	18174964	76381696	38788182	64	17389											
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100020041	100020041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	UBAC2	NM_001144072	exon8	c.G808A	p.G270R	TTTTAGGGAGGAA	.	142	45	153	0	.	91	A	100020041	G	A	100020041	3	1	138	1	0	0	0	0	1	0	0	0	16832	1246	43	3	998	3	UBAC2	13	100020041	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	23638345	100020041	15149837	65	17390											
ARHGEF7	8874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111811416	111811416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF7	NM_001113511	exon3	c.A295G	p.T99A	GTAACCACCATTC	.	109	40	136	2	.	232	G	111811416	A	G	111811416	3	3	138	1	0	0	0	0	1	0	0	0	911	159	6	2	305	2	ARHGEF7	13	111811416	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	11791375	111811416	3358462	66	17391											
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92470462	92470462	+	Silent	SNP	C	C	T	rs35798420	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRIP11	NM_004239	exon11	c.G3858A	p.Q1286Q	TAATTCCTGCCCA	.	69	18	121	0	C|0.996;T|0.004	1400	T	92470462	C	T	92470462	2	4	138	1	0	0	0	0	0	0	0	1	16552	680	24	3		3	TRIP11	14	92470462	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		92470462	14879078	67	17392											
OCA2	4948	broad.mit.edu;ucsc.edu	37	15	28230305	28230305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OCA2	NM_000275	exon13	c.G1269A	p.W423X	CATGGCCCACACC	.	126	58	146	1	.	135	T	28230305	C	T	28230305	4	4	138	1	0	0	0	0	0	1	0	0	10815	624	22	3	1295	3	OCA2	15	28230305	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		28230305	74301087	68	17393											
MAN2C1	4123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75652525	75652525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MAN2C1	NM_001256494	exon14	c.C1612T	p.R538W	GGATCCGCTCACA	.	72	30	101	1	.	90	A	75652525	G	A	75652525	3	1	138	1	0	0	0	0	1	0	0	0	9218	1086	38	1	1562	1	MAN2C1	15	75652525	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	47422220	75652525	26878867	69	17394											
CLEC16A	23274	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11114147	11114147	+	Silent	SNP	C	C	T	rs80034801	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLEC16A	NM_015226	exon11	c.C1401T	p.A467A	AAGCGCCGCCGCC	.	187	72	154	1	C|0.989;T|0.011	92	T	11114147	C	T	11114147	2	4	138	1	0	0	0	0	0	0	0	1	3500	639	23	1		1	CLEC16A	16	11114147	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		11114147	79240606	70	17395											
MMP2	4313	broad.mit.edu;bcgsc.ca	37	16	55513476	55513476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MMP2	NM_004530	exon1	c.G85A	p.A29T	GCCGCCGCCGCGC	.	68	5	74	1	.	1149	A	55513476	G	A	55513476	3	1	138	1	0	0	0	0	1	0	0	0	9658	1087	38	1	87	1	MMP2	16	55513476	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	44399329	55513476	34841277	71	17396											
CTU2	348180	ucsc.edu;bcgsc.ca	37	16	88780118	88780118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CTU2	NM_001012759	exon9	c.A937G	p.K313E	ACCCTGAAGGAGG	.	168	65	169	2	.	23	G	88780118	A	G	88780118	3	3	138	1	0	0	0	0	1	0	0	0	4048	247	9	2	971	2	CTU2	16	88780118	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	33266642	88780118	1574635	72	17397											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G856A	p.E286K	TCTCTTCCTCTGT	.	107	66	91	1	.	70225	T	7577082	C	T	7577082	3	4	138	1	0	0	0	0	1	0	0	0	16378	864	30	3	430	3	TP53	17	7577082	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10		7577082	73618128	73	17398											
VEZF1	7716	hgsc.bcm.edu;ucsc.edu	37	17	56056622	56056622	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	VEZF1	NM_007146	exon5	c.G1029A	p.Q343Q	CTGCTGCTGCTGC	.	244	34	189	0	.	136	T	56056622	C	T	56056622	2	4	138	1	0	0	0	0	0	0	0	1	17152	796	28	3		3	VEZF1	17	56056622	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	48479540	56056622	25138588	74	17399											
CLTC	1213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57754422	57754422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLTC	NM_004859	exon17	c.C2669T	p.P890L	ACAACCCGGAGAG	.	105	37	107	1	.	835	T	57754422	C	T	57754422	3	4	138	1	0	0	0	0	1	0	0	0	3566	652	23	1	2735	1	CLTC	17	57754422	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	1697800	57754422	23440788	75	17400											
C17orf64	124773	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58503178	58503178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C17orf64	NM_181707	exon2	c.G86A	p.S29N	GCTCCAGCGCCAG	.	92	29	88	1	.	271	A	58503178	G	A	58503178	3	1	138	1	0	0	0	0	1	0	0	0	1872	971	34	3	92	3	C17orf64	17	58503178	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	748756	58503178	22692032	76	17401											
STRADA	92335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61791458	61791458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	STRADA	NM_001003787	exon5	c.C134T	p.A45V	GAGCTCGCATCAT	.	132	64	106	1	.	547	A	61791458	G	A	61791458	3	1	138	1	0	0	0	0	1	0	0	0	15323	1087	38	1	1255	1	STRADA	17	61791458	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	3288280	61791458	19403752	77	17402											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3083787	3083787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYOM1	NM_003803	exon33	c.A4484T	p.N1495I	ACTTACTTGTGGG	.	63	9	41	0	.	94	A	3083787	T	A	3083787	3	1	138	1	0	0	0	0	1	0	0	0	10091	1623	56	4	597	4	MYOM1	18	3083787	Missense_Mutation	SNP	T	TCGA-FV-A4ZP-01A-12D-A25V-10		3083787	74993461	78	17403											
PTPRM	5797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8143667	8143667	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PTPRM	NM_001105244	exon14	c.C2190G	p.V730V	ACCAGTCCCAGAA	.	128	73	146	2	.	228	G	8143667	C	G	8143667	2	3	138	1	0	0	0	0	0	0	0	1	12806	842	30	4		4	PTPRM	18	8143667	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	5059880	8143667	69933581	79	17404											
TXNDC2	84203	hgsc.bcm.edu;broad.mit.edu	37	18	9887134	9887134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TXNDC2	NM_001098529	exon2	c.A658T	p.K220X	CAGCCCAAGCTGG	.	143	7	142	0	.	92	T	9887134	A	T	9887134	4	4	138	1	0	0	0	0	0	1	0	0	16794	131	5	4	664	4	TXNDC2	18	9887134	Nonsense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	1743467	9887134	68190114	80	17405											
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	43310324	43310324	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC14A1	NM_001146037	exon2	c.C207A	p.P69P	CAGCCCCACTATG	.	165	12	104	0	.	515	A	43310324	C	A	43310324	2	1	138	1	0	0	0	0	0	0	0	1	14396	581	21	3		3	SLC14A1	18	43310324	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	33423190	43310324	34766924	81	17406											
ARID3A	1820	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	932472	932472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARID3A	NM_005224	exon3	c.G423C	p.E141D	TGAGGAGGAGGAG	.	59	13	53	0	.	90	C	932472	G	C	932472	3	2	138	1	0	0	0	0	1	0	0	0	916	991	35	4	429	4	ARID3A	19	932472	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		932472	58196511	82	17407											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060557	9060557	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MUC16	NM_024690	exon3	c.C26889T	p.S8963S	CACTTTGGATGGC	.	305	65	308	0	.	566	A	9060557	G	A	9060557	2	1	138	1	0	0	0	0	0	0	0	1	9973	1335	47	3		3	MUC16	19	9060557	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	8128085	9060557	50068426	83	17408											
ZNF791	163049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12739344	12739344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF791	NM_153358	exon4	c.G1001A	p.G334E	AATGTGGGAAATC	.	52	20	38	0	.	92	A	12739344	G	A	12739344	3	1	138	1	0	0	0	0	1	0	0	0	18160	1232	43	3	1015	3	ZNF791	19	12739344	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	3678787	12739344	46389639	84	17409											
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14274081	14274081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LPHN1	NM_001008701	exon6	c.C547T	p.R183C	CCGTGCGGTAGGG	.	160	37	134	0	.	523	A	14274081	G	A	14274081	3	1	138	1	0	0	0	0	1	0	0	0	8915	1116	39	1	3953	1	LPHN1	19	14274081	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	1534737	14274081	44854902	85	17410											
ZNF43	7594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22002022	22002022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF43	NM_001256653	exon2	c.G32T	p.G11V	AATGGTCCCTAAA	.	118	48	122	2	.	154	A	22002022	C	A	22002022	3	1	138	1	0	0	0	0	1	0	0	0	17900	869	30	3	2436	3	ZNF43	19	22002022	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	7727941	22002022	37126961	86	17411											
PSG8	440533	ucsc.edu;bcgsc.ca	37	19	43259369	43259369	+	Silent	SNP	C	C	T	rs144938138	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PSG8	NM_001130167	exon4	c.G759A	p.E253E	CTTATTCTCCCTG	.	121	36	132	2	C|1.000;G|0.000	90	T	43259369	C	T	43259369	2	4	138	1	0	0	0	0	0	0	0	1	12661	912	32	3		3	PSG8	19	43259369	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	21257347	43259369	15869614	87	17412											
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45488541	45488541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLPTM1	NM_001294	exon6	c.G652A	p.A218T	ACAGAAGCGGACC	.	100	27	115	0	.	91	A	45488541	G	A	45488541	3	1	138	1	0	0	0	0	1	0	0	0	3554	971	34	3	674	3	CLPTM1	19	45488541	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	2229172	45488541	13640442	88	17413											
VN1R4	317703	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53770602	53770602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	VN1R4	NM_173857	exon1	c.T317G	p.V106G	GTGATCACCTGGA	.	334	42	340	1	.	92	C	53770602	A	C	53770602	3	2	138	1	0	0	0	0	1	0	0	0	17177	159	6	5	591	5	VN1R4	19	53770602	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10	8282061	53770602	5358381	89	17414											
C20orf196	149840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5843711	5843711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C20orf196	NM_152504	exon3	c.G220A	p.A74T	TGGACCGCTGAGA	.	90	9	79	0	.	90	A	5843711	G	A	5843711	3	1	138	1	0	0	0	0	1	0	0	0	2101	1087	38	1	226	1	C20orf196	20	5843711	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		5843711	57181809	90	17415											
KIF16B	55614	broad.mit.edu;bcgsc.ca	37	20	16410519	16410523	+	Frame_Shift_Del	DEL	ATAAG	ATAAG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	ATAAG	ATAAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIF16B	NM_001199865	exon13	c.1407_1411del	p.469_471del	AATGATATAAGAT	.	21	7	26	0	.	291	-	16410523	ATAAG	-	16410519	7	5	138	1	0	1	0	1	0	0	0	0	8278	449	16	0	2598	0	KIF16B	20	16410519	Frame_Shift_Del	DEL	ATAAG	TCGA-FV-A4ZP-01A-12D-A25V-10	10566808	16410519	46615001	91	17416											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40980875	40980875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PTPRT	NM_007050	exon10	c.C1611G	p.S537R	CCTCTGGCTCGAG	.	86	15	101	0	.	664	C	40980875	G	C	40980875	3	2	138	1	0	0	0	0	1	0	0	0	12812	1194	42	4	2863	4	PTPRT	20	40980875	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	24570356	40980875	22044645	92	17417											
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21153477	21153477	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PI4KA	NM_058004	exon16	c.C1908T	p.P636P	CAGAATGGGCTCC	.	64	17	60	0	.	454	A	21153477	G	A	21153477	2	1	138	1	0	0	0	0	0	0	0	1	11873	1335	47	3		3	PI4KA	22	21153477	Silent	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10		21153477	30151089	93	17418											
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22843682	22843682	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF280B	NM_080764	exon4	c.G42A	p.Q14Q	GTTCTTCTGTGGT	.	293	45	316	0	.	70	T	22843682	C	T	22843682	2	4	138	1	0	0	0	0	0	0	0	1	17812	912	32	3		3	ZNF280B	22	22843682	Silent	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	1690205	22843682	28460884	94	17419											
CELSR1	9620	broad.mit.edu;bcgsc.ca	37	22	46772959	46772959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CELSR1	NM_014246	exon24	c.C7583T	p.P2528L	CATACCGGGTTTT	.	59	28	77	1	.	525	A	46772959	G	A	46772959	3	1	138	1	0	0	0	0	1	0	0	0	3221	1130	39	1	1509	1	CELSR1	22	46772959	Missense_Mutation	SNP	G	TCGA-FV-A4ZP-01A-12D-A25V-10	23929277	46772959	4531607	95	17420											
OTUD5	55593	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	48814825	48814825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OTUD5	NM_001136157	exon1	c.T8C	p.I3T	GGGAGTATAGTCA	.	55	43	47	0	.	541	G	48814825	A	G	48814825	3	3	138	1	0	0	0	0	1	0	0	0	11315	449	16	2	1743	2	OTUD5	23	48814825	Missense_Mutation	SNP	A	TCGA-FV-A4ZP-01A-12D-A25V-10		48814825	106455735	96	17421											
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135863020	135863020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF6	NM_004840	exon1	c.G22A	p.V8M	ATGTCACGATTTG	.	36	25	41	0	.	227	T	135863020	C	T	135863020	3	4	138	1	0	0	0	0	1	0	0	0	910	536	19	1	2396	1	ARHGEF6	23	135863020	Missense_Mutation	SNP	C	TCGA-FV-A4ZP-01A-12D-A25V-10	87048195	135863020	19407540	97	17422											
TNFRSF18	8784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1139782	1139782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TNFRSF18	NM_148902	exon3	c.C395A	p.T132K	CACTCTGTCCAAG	.	84	21	118	0	.	227	T	1139782	G	T	1139782	3	4	139	1	0	0	0	0	1	0	0	0	16288	1377	48	3	595	3	TNFRSF18	1	1139782	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10		1139782	248110839	1	17423											
VWA1	64856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1372313	1372313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	VWA1	NM_022834	exon2	c.C80T	p.P27L	GTCCACCAGCATC	.	127	35	185	0	.	22	T	1372313	C	T	1372313	3	4	139	1	0	0	0	0	1	0	0	0	17235	594	21	3	86	3	VWA1	1	1372313	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	232531	1372313	247878308	2	17424											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22084166	22084166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	USP48	NM_001032730	exon2	c.G245T	p.R82M	TTTCTCCTCTCAC	.	79	24	86	0	.	659	A	22084166	C	A	22084166	3	1	139	1	0	0	0	0	1	0	0	0	17076	681	24	3	2974	3	USP48	1	22084166	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	20711853	22084166	227166455	3	17425											
TCTEX1D1	200132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67242056	67242056	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TCTEX1D1	NM_152665	exon4	c.C306T	p.L102L	AGAGCTCTGTAGA	.	144	51	180	0	.	90	T	67242056	C	T	67242056	2	4	139	1	0	0	0	0	0	0	0	1	15716	900	32	3		3	TCTEX1D1	1	67242056	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	45157890	67242056	182008565	4	17426											
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156785887	156785887	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SH2D2A	NM_003975	exon3	c.35-1G>A	.	GACTCCCTGTGAG	.	126	42	152	0	.	90	T	156785887	C	T	156785887	5	4	139	1	0	0	0	0	0	0	1	0	14232	695	24	3	1193	3	SH2D2A	1	156785887	Splice_Site	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	89543831	156785887	92464734	5	17427											
ATP1A4	480	hgsc.bcm.edu;bcgsc.ca	37	1	160136811	160136811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ATP1A4	NM_144699	exon9	c.G1300T	p.G434C	ATCGCTGGCCTCT	.	79	4	65	0	.	94	T	160136811	G	T	160136811	3	4	139	1	0	0	0	0	1	0	0	0	1131	1348	47	3	1334	3	ATP1A4	1	160136811	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	3350924	160136811	89113810	6	17428											
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204937427	204937427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NFASC	NM_015090	exon9	c.G790A	p.A264T	GGCACCGCGAGCA	.	104	30	132	0	.	139	A	204937427	G	A	204937427	3	1	139	1	0	0	0	0	1	0	0	0	10359	1087	38	1	838	1	NFASC	1	204937427	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	44800616	204937427	44313194	7	17429											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216062335	216062335	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	USH2A	NM_206933	exon41	c.C7656T	p.T2552T	CTGCCAGGTGACC	.	41	14	45	0	.	115	A	216062335	G	A	216062335	2	1	139	1	0	0	0	0	0	0	0	1	17033	987	35	3		3	USH2A	1	216062335	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	11124908	216062335	33188286	8	17430											
SLC30A10	55532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220088994	220088994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC30A10	NM_018713	exon4	c.G1255T	p.A419S	GCAGTGCCCCGGG	.	201	56	224	0	.	90	A	220088994	C	A	220088994	3	1	139	1	0	0	0	0	1	0	0	0	14554	739	26	3	206	3	SLC30A10	1	220088994	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	4026659	220088994	29161627	9	17431											
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	17696823	17696823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RAD51AP2	NM_001099218	exon1	c.G2860T	p.E954X	GAGCTTCTGTTGA	.	123	44	160	0	.	23	A	17696823	C	A	17696823	4	1	139	1	0	0	0	0	0	1	0	0	12987	922	32	3	631	3	RAD51AP2	2	17696823	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		17696823	225502550	10	17432											
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20490545	20490545	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PUM2	NM_015317	exon9	c.C1159G	p.R387G	CAGCACGGAGAAC	.	103	36	137	0	.	91	C	20490545	G	C	20490545	3	2	139	1	0	0	0	0	1	0	0	0	12826	1116	39	4	2083	4	PUM2	2	20490545	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	2793722	20490545	222708828	11	17433											
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37580079	37580079	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	QPCT	NM_012413	exon2	c.267+1G>T	.	CGTCAGGTGAGAA	.	42	20	34	0	.	90	T	37580079	G	T	37580079	5	4	139	1	0	0	0	0	0	0	1	0	12874	1275	44	3	274	3	QPCT	2	37580079	Splice_Site	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	17089534	37580079	205619294	12	17434											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54858501	54858501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPTBN1	NM_003128	exon16	c.A3317G	p.N1106S	ACGAGAACATCAA	.	201	61	201	0	.	140	G	54858501	A	G	54858501	3	3	139	1	0	0	0	0	1	0	0	0	15118	43	2	2	3488	2	SPTBN1	2	54858501	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	17278422	54858501	188340872	13	17435											
KIAA1841	84542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61324923	61324923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KIAA1841	NM_032506	exon12	c.G1301T	p.G434V	CTGTTGGCACTGG	.	165	43	204	0	.	90	T	61324923	G	T	61324923	3	4	139	1	0	0	0	0	1	0	0	0	8261	1203	42	3	1339	3	KIAA1841	2	61324923	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	6466422	61324923	181874450	14	17436											
NFU1	27247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69642381	69642381	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NFU1	NM_001002755	exon5	c.A420T	p.T140T	CATGATTGTTGCA	.	217	53	245	0	.	90	A	69642381	T	A	69642381	2	1	139	1	0	0	0	0	0	0	0	1	10386	1799	63	4		4	NFU1	2	69642381	Silent	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	8317458	69642381	173556992	15	17437											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86709144	86709144	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KDM3A	NM_001146688	exon17	c.G2604A	p.T868T	CCATACGTTTAAC	.	177	54	169	0	.	291	A	86709144	G	A	86709144	2	1	139	1	0	0	0	0	0	0	0	1	8126	1132	40	1		1	KDM3A	2	86709144	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	17066763	86709144	156490229	16	17438											
MAP4K4	9448	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	102480445	102480445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MAP4K4	NM_001242560	exon16	c.A1774G	p.K592E	GACTCTAAGTCAG	.	148	43	151	1	.	547	G	102480445	A	G	102480445	3	3	139	1	0	0	0	0	1	0	0	0	9262	363	13	2	2095	2	MAP4K4	2	102480445	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	15771301	102480445	140718928	17	17439											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	171700595	171700595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GAD1	NM_000817	exon7	c.C679A	p.Q227K	ATGGAACAAATAA	.	182	42	213	0	.	91	A	171700595	C	A	171700595	3	1	139	1	0	0	0	0	1	0	0	0	6179	479	17	3	742	3	GAD1	2	171700595	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	69220150	171700595	71498778	18	17440											
IKZF2	22807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	213914450	213914450	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	IKZF2	NM_016260	exon5	c.C561T	p.L187L	GGTCCTGAGGTGT	.	81	30	80	0	.	226	A	213914450	G	A	213914450	2	1	139	1	0	0	0	0	0	0	0	1	7615	1277	45	3		3	IKZF2	2	213914450	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	42213855	213914450	29284923	19	17441											
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	214354720	214354720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPAG16	NM_024532	exon10	c.C976T	p.P326S	CCAAATCCAAACC	.	106	36	97	0	.	188	T	214354720	C	T	214354720	3	4	139	1	0	0	0	0	1	0	0	0	14978	855	30	3	1030	3	SPAG16	2	214354720	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	440270	214354720	28844653	20	17442											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220348819	220348819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPEG	NM_005876	exon30	c.C6634T	p.Q2212X	CCTGCCCAAGACA	.	64	24	158	0	.	383	T	220348819	C	T	220348819	4	4	139	1	0	0	0	0	0	1	0	0	15035	595	21	3	6764	3	SPEG	2	220348819	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	5994099	220348819	22850554	21	17443											
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	232209780	232209780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ARMC9	NM_025139	exon21	c.G1972A	p.G658S	CCCGGCGGCCACA	.	92	6	77	0	.	91	A	232209780	G	A	232209780	3	1	139	1	0	0	0	0	1	0	0	0	958	1116	39	1	2050	1	ARMC9	2	232209780	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	11860961	232209780	10989593	22	17444											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	TGGACTCTGGAAT	.	287	76	306	0	.	24361	G	41266101	C	G	41266101	3	3	139	1	0	0	0	0	1	0	0	0	4016	913	32	4	104	4	CTNNB1	3	41266101	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		41266101	156756329	23	17445											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108204062	108204062	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MYH15	NM_014981	exon12	c.C1050A	p.I350I	GCCCAAGATGTCC	.	121	66	125	0	.	73	T	108204062	G	T	108204062	2	4	139	1	0	0	0	0	0	0	0	1	10034	932	33	3		3	MYH15	3	108204062	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	66937961	108204062	89818368	24	17446											
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183209982	183209982	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLHL6	NM_130446	exon7	c.G1599C	p.P533P	TTCCAGCGGGCTG	.	46	38	106	0	.	93	G	183209982	C	G	183209982	2	3	139	1	0	0	0	0	0	0	0	1	8393	755	27	4		4	KLHL6	3	183209982	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	75005920	183209982	14812448	25	17447											
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196387716	196387719	+	Frame_Shift_Del	DEL	TGGG	TGGG	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	TGGG	TGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1202_1205del	p.401_402del	GCTGCCTGGGCAG	.	38	27	52	0	.	92	-	196387719	TGGG	-	196387716	7	5	139	1	0	1	0	1	0	0	0	0	8988	1580	55	0	1208	0	LRRC33	3	196387716	Frame_Shift_Del	DEL	TGGG	TCGA-FV-A4ZQ-01A-11D-A25V-10	13177734	196387716	1634714	26	17448	95	2									
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196387720	196387721	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1206_1207insA	p.G402fs	CCTGGGCAGCCTG	.	39	28	57	0	.	92	A	196387721	-	A	196387720	7	5	139	1	0	1	1	0	0	0	0	0	8988	697	25	0	1212	0	LRRC33	3	196387720	Frame_Shift_Ins	INS	-	TCGA-FV-A4ZQ-01A-11D-A25V-10	4	196387720	1634710	27	17449	95	2									
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79166410	79166410	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	FRAS1	NM_001166133	exon4	c.C240T	p.A80A	AGCTGCCAACCAA	.	140	47	145	0	.	68	T	79166410	C	T	79166410	2	4	139	1	0	0	0	0	0	0	0	1	6042	581	21	3		3	FRAS1	4	79166410	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		79166410	111987866	28	17450											
HERC6	55008	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89318063	89318063	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	HERC6	NM_017912	exon7	c.A948G	p.P316P	TGGACCAAGTGAC	.	176	57	166	2	.	658	G	89318063	A	G	89318063	2	3	139	1	0	0	0	0	0	0	0	1	7062	117	5	2		2	HERC6	4	89318063	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	10151653	89318063	101836213	29	17451											
MANBA	4126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103590162	103590162	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MANBA	NM_005908	exon10	c.T1275C	p.D425D	GCCCTGATCAGTT	.	127	35	152	1	.	91	G	103590162	A	G	103590162	2	3	139	1	0	0	0	0	0	0	0	1	9219	330	12	2		2	MANBA	4	103590162	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	14272099	103590162	87564114	30	17452											
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153253841	153253841	+	Missense_Mutation	SNP	G	G	T	rs112892452	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	FBXW7,rectum,adenoma,0	FBXW7	NM_033632	exon6	c.C892A	p.P298T	CTTTGGGTTCCAG	.	124	36	109	0	G|0.500;A|0.500	6296	T	153253841	G	T	153253841	3	4	139	1	0	0	0	0	1	0	0	0	5769	1261	44	3	1259	3	FBXW7	4	153253841	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	49663679	153253841	37900435	31	17453											
ADAM29	11086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175897585	175897585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ADAM29	NM_001130703	exon4	c.T909A	p.F303L	AGCTTTTAGAGGA	.	215	64	241	1	.	729	A	175897585	T	A	175897585	3	1	139	1	0	0	0	0	1	0	0	0	247	1751	61	4	911	4	ADAM29	4	175897585	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	22643744	175897585	15256691	32	17454											
HAPLN1	1404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82937472	82937472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	HAPLN1	NM_001884	exon5	c.G908T	p.R303L	TCACAGCGGTCAT	.	269	66	216	0	.	580	A	82937472	C	A	82937472	3	1	139	1	0	0	0	0	1	0	0	0	6954	768	27	1	160	1	HAPLN1	5	82937472	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		82937472	97977788	33	17455											
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433269	140433269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PCDHB1	NM_013340	exon1	c.C2214A	p.N738K	CTCTAACAACCTG	.	135	36	129	0	.	90	A	140433269	C	A	140433269	3	1	139	1	0	0	0	0	1	0	0	0	11534	477	17	3	2216	3	PCDHB1	5	140433269	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	57495797	140433269	40481991	34	17456											
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17637675	17637675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NUP153	NM_005124	exon16	c.A2173G	p.T725A	CCCAAGTGCCTAT	.	338	207	280	0	.	637	C	17637675	T	C	17637675	3	2	139	1	0	0	0	0	1	0	0	0	10755	1696	59	2	2282	2	NUP153	6	17637675	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10		17637675	153477392	35	17457											
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	43322734	43322734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF318	NM_014345	exon4	c.G2338T	p.G780X	CAGGTCCCTGGTA	.	529	113	335	0	.	157	A	43322734	C	A	43322734	4	1	139	1	0	0	0	0	0	1	0	0	17833	632	22	3	4529	3	ZNF318	6	43322734	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	25685059	43322734	127792333	36	17458											
EPHA7	2045	ucsc.edu;mdanderson.org	37	6	93982124	93982124	+	Missense_Mutation	SNP	G	G	T	rs345713	byfrequency;alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPHA7	NM_004440	exon6	c.T1341A	p.S447R	TACTCCACTCACT	.	208	63	191	0	G|0.910;A|0.090	1453	T	93982124	G	T	93982124	3	4	139	1	0	0	0	0	1	0	0	0	5172	156	6	4	1703	4	EPHA7	6	93982124	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	50659390	93982124	77132943	37	17459											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968959	106968959	+	Silent	SNP	G	G	T	rs199971648		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AIM1	NM_001624	exon2	c.G2652T	p.P884P	TGCCCCGCCCTGT	.	99	29	98	0	G|0.999;T|0.000	139	T	106968959	G	T	106968959	2	4	139	1	0	0	0	0	0	0	0	1	430	1074	38	1		1	AIM1	6	106968959	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	12986835	106968959	64146108	38	17460											
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110752455	110752455	+	Missense_Mutation	SNP	G	G	T	rs145203259	bycluster;byfrequency;alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC22A16	NM_033125	exon7	c.C1440A	p.S480R	GCTGCCGCTTCCC	.	28	14	43	0	G|0.998;C|0.002	91	T	110752455	G	T	110752455	3	4	139	1	0	0	0	0	1	0	0	0	14447	1078	38	1	301	1	SLC22A16	6	110752455	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	3783496	110752455	60362612	39	17461											
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170065609	170065609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	WDR27	NM_182552	exon7	c.G756T	p.Q252H	GACCAGCTGCCTG	.	150	30	93	0	.	69	A	170065609	C	A	170065609	3	1	139	1	0	0	0	0	1	0	0	0	17281	796	28	3	1893	3	WDR27	6	170065609	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	59313154	170065609	1049458	40	17462											
C6orf70	55780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170159125	170159125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	C6orf70	NM_018341	exon6	c.G569T	p.W190L	TCTTATGGCATGG	.	287	77	261	0	.	91	T	170159125	G	T	170159125	3	4	139	1	0	0	0	0	1	0	0	0	2370	1357	47	3	591	3	C6orf70	6	170159125	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	93516	170159125	955942	41	17463											
CFTR	1080	ucsc.edu;bcgsc.ca	37	7	117176688	117176688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CFTR	NM_000492	exon7	c.G830T	p.W277L	ACTGCTGGGAAGA	.	36	4	25	0	.	518	T	117176688	G	T	117176688	3	4	139	1	0	0	0	0	1	0	0	0	3294	1357	47	3	856	3	CFTR	7	117176688	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10		117176688	41961975	42	17464											
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73921159	73921159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TERF1	NM_017489	exon1	c.G38C	p.R13P	GCCCGCGGGGCTG	.	318	48	241	0	.	228	C	73921159	G	C	73921159	3	2	139	1	0	0	0	0	1	0	0	0	15758	1116	39	4	40	4	TERF1	8	73921159	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10		73921159	72442863	43	17465											
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113651094	113651094	+	Missense_Mutation	SNP	G	G	C	rs145905619	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CSMD3	NM_198123	exon21	c.C3357G	p.D1119E	TAAGTAGTCATGA	.	159	98	108	1	G|1.000;A|0.000	1132	C	113651094	G	C	113651094	3	2	139	1	0	0	0	0	1	0	0	0	3946	1020	36	4	7970	4	CSMD3	8	113651094	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	39729935	113651094	32712928	44	17466											
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116427073	116427073	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TRPS1	NM_014112	exon7	c.T3063C	p.G1021G	CAATGAACCCTGG	.	302	45	170	0	.	229	G	116427073	A	G	116427073	2	3	139	1	0	0	0	0	0	0	0	1	16590	30	2	2		2	TRPS1	8	116427073	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	2775979	116427073	29936949	45	17467											
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144991598	144991598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PLEC	NM_201380	exon32	c.T12802G	p.S4268A	TGGAGGACGTCTT	.	145	21	91	1	.	141	C	144991598	A	C	144991598	3	2	139	1	0	0	0	0	1	0	0	0	12052	275	10	5	1256	5	PLEC	8	144991598	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	28564525	144991598	1372424	46	17468											
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5072525	5072525	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	JAK2	NM_004972	exon13	c.A1675C	p.I559L	ACAAAGATTTTTA	.	78	22	91	0	.	75307	C	5072525	A	C	5072525	3	2	139	1	0	0	0	0	1	0	0	0	7938	333	12	5	1717	5	JAK2	9	5072525	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10		5072525	136140906	47	17469											
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95155381	95155381	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OGN	NM_033014	exon4	c.T414C	p.D138D	TGCAAAATCTTTG	.	189	71	174	0	.	492	G	95155381	A	G	95155381	2	3	139	1	0	0	0	0	0	0	0	1	10846	98	4	2		2	OGN	9	95155381	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	90082856	95155381	46058050	48	17470											
EPB41L4B	54566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112004035	112004035	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPB41L4B	NM_018424	exon16	c.C1464T	p.D488D	ATGGCTGTCATCT	.	231	78	225	0	.	92	A	112004035	G	A	112004035	2	1	139	1	0	0	0	0	0	0	0	1	5156	1368	48	3		3	EPB41L4B	9	112004035	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	16848654	112004035	29209396	49	17471											
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112694224	112694224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	PALM2-AKAP2,nipple,malignant_melanoma,-1	PALM2-AKAP2	NM_007203	exon6	c.T412A	p.S138T	TACATTTCCTCCC	.	84	33	102	0	.	475	A	112694224	T	A	112694224	3	1	139	1	0	0	0	0	1	0	0	0	11410	1783	62	4	434	4	PALM2-AKAP2	9	112694224	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	690189	112694224	28519207	50	17472											
NET1	10276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5488742	5488742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NET1	NM_005863	exon1	c.A14T	p.D5V	CACATGATGAGAC	.	77	10	71	0	.	290	T	5488742	A	T	5488742	3	4	139	1	0	0	0	0	1	0	0	0	10338	333	12	4	283	4	NET1	10	5488742	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10		5488742	130046005	51	17473											
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	113935464	113935464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GPAM	NM_020918	exon6	c.G307T	p.G103X	GCCATCCGCGGTG	.	79	29	64	0	.	92	A	113935464	C	A	113935464	4	1	139	1	0	0	0	0	0	1	0	0	6588	661	23	1	2247	1	GPAM	10	113935464	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	108446722	113935464	21599283	52	17474											
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129904790	129904790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MKI67	NM_002417	exon13	c.A5314T	p.R1772W	GTTTCCTAAATGC	.	238	47	201	1	.	519	A	129904790	T	A	129904790	3	1	139	1	0	0	0	0	1	0	0	0	9598	1521	53	4	4468	4	MKI67	10	129904790	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	15969326	129904790	5629957	53	17475											
EBF3	253738	hgsc.bcm.edu;bcgsc.ca	37	10	131676057	131676057	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EBF3	NM_001005463	exon7	c.611delA	p.N204fs	CGAGGGTTGCCTG	.	78	23	94	0	.	91	-	131676057	T	-	131676057	7	5	139	1	0	1	0	1	0	0	0	0	4882	1725	60	0	1084	0	EBF3	10	131676057	Frame_Shift_Del	DEL	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	1771267	131676057	3858690	54	17476											
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	134012417	134012417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DPYSL4	NM_006426	exon8	c.C753A	p.Y251X	GCTGTACGTCACC	.	189	84	247	1	.	514	A	134012417	C	A	134012417	4	1	139	1	0	0	0	0	0	1	0	0	4749	547	19	1	783	1	DPYSL4	10	134012417	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	2336360	134012417	1522330	55	17477											
STK33	65975	hgsc.bcm.edu;broad.mit.edu	37	11	8474374	8474374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	STK33	NM_030906	exon9	c.A866G	p.Y289C	CCCATATAGATAG	.	88	5	53	0	.	337	C	8474374	T	C	8474374	3	2	139	1	0	0	0	0	1	0	0	0	15299	1406	49	2	702	2	STK33	11	8474374	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10		8474374	126532142	56	17478											
OR4A47	403253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48510880	48510880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OR4A47	NM_001005512	exon1	c.T536A	p.M179K	GTGACATGTATCC	.	331	77	268	0	.	92	A	48510880	T	A	48510880	3	1	139	1	0	0	0	0	1	0	0	0	11042	1464	51	4	538	4	OR4A47	11	48510880	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	40036506	48510880	86495636	57	17479											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66616778	66616778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PC	NM_000920	exon21	c.G3211T	p.A1071S	GGCCGGCCCGGTT	.	136	94	155	0	.	228	A	66616778	C	A	66616778	3	1	139	1	0	0	0	0	1	0	0	0	11497	739	26	3	333	3	PC	11	66616778	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	18105898	66616778	68389738	58	17480											
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88330465	88330465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GRM5	NM_000842	exon6	c.G1450A	p.V484I	TTCCAACGTTGAT	.	148	50	145	0	.	949	T	88330465	C	T	88330465	3	4	139	1	0	0	0	0	1	0	0	0	6800	536	19	1	2208	1	GRM5	11	88330465	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	21713687	88330465	46676051	59	17481											
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115085403	115085403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CADM1	NM_014333	exon7	c.G919T	p.D307Y	CATTATCTGTTTT	.	477	131	546	0	.	92	A	115085403	C	A	115085403	3	1	139	1	0	0	0	0	1	0	0	0	2566	913	32	3	425	3	CADM1	11	115085403	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	26754938	115085403	19921113	60	17482											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85441061	85441061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRIQ1	NM_001079910	exon6	c.A491G	p.E164G	AAGTGGAAGAAAA	.	115	23	117	0	.	95	G	85441061	A	G	85441061	3	3	139	1	0	0	0	0	1	0	0	0	9029	246	9	2	509	2	LRRIQ1	12	85441061	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10		85441061	48410834	61	17483											
RFC5	5985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118456923	118456923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RFC5	NM_007370	exon2	c.C112G	p.Q38E	TCTCATCAGGACA	.	88	24	53	0	.	227	G	118456923	C	G	118456923	3	3	139	1	0	0	0	0	1	0	0	0	13248	827	29	4	124	4	RFC5	12	118456923	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	33015862	118456923	15394972	62	17484											
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049768	36049768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MAB21L1	NM_005584	exon1	c.A508T	p.I170F	GCGTGATCTGCAC	.	174	42	231	0	.	92	A	36049768	T	A	36049768	3	1	139	1	0	0	0	0	1	0	0	0	9141	1435	50	4	575	4	MAB21L1	13	36049768	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10		36049768	79120110	63	17485											
ELF1	1997	hgsc.bcm.edu;bcgsc.ca	37	13	41525513	41525513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ELF1	NM_001145353	exon3	c.C313A	p.L105I	TGAGGAGTGCCTC	.	66	4	85	0	.	227	T	41525513	G	T	41525513	3	4	139	1	0	0	0	0	1	0	0	0	5053	1029	36	3	1570	3	ELF1	13	41525513	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	5475745	41525513	73644365	64	17486											
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	42872928	42872928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AKAP11	NM_016248	exon7	c.A611G	p.N204S	CATACAATGATGG	.	56	22	87	0	.	227	G	42872928	A	G	42872928	3	3	139	1	0	0	0	0	1	0	0	0	447	101	4	2	629	2	AKAP11	13	42872928	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	1347415	42872928	72296950	65	17487											
EXOC5	10640	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	57713485	57713485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EXOC5	NM_006544	exon3	c.C214T	p.Q72X	CTTTCTGACATTG	.	125	39	122	1	.	137	A	57713485	G	A	57713485	4	1	139	1	0	0	0	0	0	1	0	0	5307	1299	45	3	1976	3	EXOC5	14	57713485	Nonsense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10		57713485	49636055	66	17488											
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72190403	72190403	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SIPA1L1	NM_015556	exon16	c.C4311T	p.F1437F	GGTTTTCACCAGT	.	97	32	149	0	.	156	T	72190403	C	T	72190403	2	4	139	1	0	0	0	0	0	0	0	1	14329	825	29	3		3	SIPA1L1	14	72190403	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	14476918	72190403	35159137	67	17489											
SERPINA9	327657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94936087	94936087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SERPINA9	NM_175739	exon2	c.C145A	p.P49T	GGCGGGGGTATGC	.	109	37	119	0	.	226	T	94936087	G	T	94936087	3	4	139	1	0	0	0	0	1	0	0	0	14095	1232	43	3	1178	3	SERPINA9	14	94936087	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	22745684	94936087	12413453	68	17490											
KLC1	3831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104153537	104153537	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLC1	NM_001130107	exon14	c.A1770G	p.P590P	TGAGCCAAAGAAC	.	76	18	111	0	.	90	G	104153537	A	G	104153537	2	3	139	1	0	0	0	0	0	0	0	1	8333	117	5	2		2	KLC1	14	104153537	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	9217450	104153537	3196003	69	17491											
B2M	567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	45007635	45007635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	B2M	NM_004048	exon2	c.C82T	p.Q28X	AAGATTCAGGTTT	.	103	55	69	0	.	93	T	45007635	C	T	45007635	4	4	139	1	0	0	0	0	0	1	0	0	1244	827	29	3	88	3	B2M	15	45007635	Nonsense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		45007635	57523757	70	17492											
RAB27A	5873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55527010	55527010	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RAB27A	NM_183235	exon3	c.A123T	p.T41T	GCCCACTGTTGTG	.	109	16	92	0	.	228	A	55527010	T	A	55527010	2	1	139	1	0	0	0	0	0	0	0	1	12914	1567	55	4		4	RAB27A	15	55527010	Silent	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	10519375	55527010	47004382	71	17493											
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65623843	65623843	+	Missense_Mutation	SNP	C	C	T	rs148656626	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	IGDCC3	NM_004884	exon8	c.G1303A	p.V435M	AAGACACAGAGAC	.	132	30	162	0	C|0.999;T|0.001	93	T	65623843	C	T	65623843	3	4	139	1	0	0	0	0	1	0	0	0	7568	478	17	3	1169	3	IGDCC3	15	65623843	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	10096833	65623843	36907549	72	17494											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	396951	396951	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AXIN1	NM_181050	exon2	c.G75T	p.V25V	ACCAGGCACTGGG	.	91	33	84	0	.	684	A	396951	C	A	396951	2	1	139	1	0	0	0	0	0	0	0	1	1236	697	25	3		3	AXIN1	16	396951	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		396951	89957802	73	17495											
THAP11	57215	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67877084	67877084	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	THAP11	NM_020457	exon1	c.G627T	p.S209S	CGCGTCGGAGTTA	.	19	5	41	0	.	90	T	67877084	G	T	67877084	2	4	139	1	0	0	0	0	0	0	0	1	15840	1103	39	1		1	THAP11	16	67877084	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	67480133	67877084	22477669	74	17496											
BCAR1	9564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75263466	75263466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	BCAR1	NM_001170714	exon8	c.G2694T	p.E898D	GCCCAGCTCCTTG	.	12	5	45	0	.	1145	A	75263466	C	A	75263466	3	1	139	1	0	0	0	0	1	0	0	0	1348	796	28	3	60	3	BCAR1	16	75263466	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	7386382	75263466	15091287	75	17497											
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87788861	87788861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLHDC4	NM_001184856	exon4	c.G308A	p.R103K	TCCTTTCTGGTAT	.	237	67	238	0	.	182	T	87788861	C	T	87788861	3	4	139	1	0	0	0	0	1	0	0	0	8358	913	32	3	1286	3	KLHDC4	16	87788861	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	12525395	87788861	2565892	76	17498											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577141	7577141	+	Missense_Mutation	SNP	C	C	A	rs193920774	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G797T	p.G266V	TTCCGTCCCAGTA	.	76	39	66	0	.	70225	A	7577141	C	A	7577141	3	1	139	1	0	0	0	0	1	0	0	0	16378	855	30	3	489	3	TP53	17	7577141	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		7577141	73618069	77	17499											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28022497	28022497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SSH2	NM_033389	exon4	c.C256G	p.P86A	CTTCTGGGCGGAG	.	130	74	142	0	.	92	C	28022497	G	C	28022497	3	2	139	1	0	0	0	0	1	0	0	0	15184	1232	43	4	4063	4	SSH2	17	28022497	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10	20445356	28022497	53172713	78	17500											
APOH	350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	64210647	64210647	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	APOH	NM_000042	exon7	c.T906C	p.N302N	TTCCTTATTTTTG	.	187	37	196	0	.	90	G	64210647	A	G	64210647	2	3	139	1	0	0	0	0	0	0	0	1	804	446	16	2		2	APOH	17	64210647	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	36188150	64210647	16984563	79	17501											
KPNA2	3838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66038335	66038335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KPNA2	NM_002266	exon5	c.A437G	p.N146S	TCACTAACATTGC	.	137	95	169	1	.	560	G	66038335	A	G	66038335	3	3	139	1	0	0	0	0	1	0	0	0	8430	43	2	2	451	2	KPNA2	17	66038335	Missense_Mutation	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	1827688	66038335	15156875	80	17502											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74006234	74006234	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EVPL	NM_001988	exon22	c.G3052C	p.E1018Q	TGACCTCCTTGGT	.	120	73	182	0	.	93	G	74006234	C	G	74006234	3	3	139	1	0	0	0	0	1	0	0	0	5292	864	30	4	3053	4	EVPL	17	74006234	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	7967899	74006234	7188976	81	17503											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17947999	17947999	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	JAK3	NM_000215	exon13	c.G1725A	p.L575L	GCTCATCAAGCTC	.	130	26	94	0	.	2418	T	17947999	C	T	17947999	2	4	139	1	0	0	0	0	0	0	0	1	7939	825	29	3		3	JAK3	19	17947999	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10		17947999	41180984	82	17504											
PSG4	5672	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	43699214	43699214	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PSG4	NM_002780	exon4	c.T921C	p.C307C	TTGATAAGGTCCT	.	129	24	114	0	.	91	G	43699214	A	G	43699214	2	3	139	1	0	0	0	0	0	0	0	1	12657	59	3	2		2	PSG4	19	43699214	Silent	SNP	A	TCGA-FV-A4ZQ-01A-11D-A25V-10	25751215	43699214	15429769	83	17505											
EPS8L1	54869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55598089	55598089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPS8L1	NM_133180	exon18	c.C1785G	p.F595L	GAAATTCTCCCAG	.	49	10	67	0	.	115	G	55598089	C	G	55598089	3	3	139	1	0	0	0	0	1	0	0	0	5195	912	32	4	1903	4	EPS8L1	19	55598089	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	11898875	55598089	3530894	84	17506											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	41101120	41101120	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PTPRT	NM_007050	exon8	c.C1236T	p.Y412Y	CACCGCGTAGCCG	.	231	24	138	0	.	664	A	41101120	G	A	41101120	2	1	139	1	0	0	0	0	0	0	0	1	12812	1140	40	1		1	PTPRT	20	41101120	Silent	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10		41101120	21924400	85	17507											
DIDO1	11083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61512904	61512904	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DIDO1	NM_001193369	exon16	c.G4404T	p.A1468A	GGGCGTCGCAGCC	.	167	74	154	1	.	96	A	61512904	C	A	61512904	2	1	139	1	0	0	0	0	0	0	0	1	4522	871	31	1		1	DIDO1	20	61512904	Silent	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	20411784	61512904	1512616	86	17508											
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62591366	62591366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF512B	NM_020713	exon17	c.A2554G	p.T852A	CTGGGGTCCGCTC	.	56	10	52	0	.	90	C	62591366	T	C	62591366	3	2	139	1	0	0	0	0	1	0	0	0	17954	1667	58	2	128	2	ZNF512B	20	62591366	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10	1078462	62591366	434154	87	17509											
C21orf33	8209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45553649	45553649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	C21orf33	NM_198155	exon1	c.G70A	p.G24S	TCCCCCGGCGGTC	.	13	9	54	0	.	91	A	45553649	G	A	45553649	3	1	139	1	0	0	0	0	1	0	0	0	2125	1116	39	1	72	1	C21orf33	21	45553649	Missense_Mutation	SNP	G	TCGA-FV-A4ZQ-01A-11D-A25V-10		45553649	2576246	88	17510											
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28193384	28193384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MN1	NM_002430	exon1	c.A3148T	p.S1050C	TCGTGCTCACCTC	.	51	16	93	0	.	993	A	28193384	T	A	28193384	3	1	139	1	0	0	0	0	1	0	0	0	9673	1551	54	4	822	4	MN1	22	28193384	Missense_Mutation	SNP	T	TCGA-FV-A4ZQ-01A-11D-A25V-10		28193384	23111182	89	17511											
RPL3	6122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	39709288	39709288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RPL3	NM_000967	exon9	c.G1075T	p.A359S	CCAGAGCCCGCCG	.	141	34	141	0	.	154	A	39709288	C	A	39709288	3	1	139	1	0	0	0	0	1	0	0	0	13579	739	26	3	144	3	RPL3	22	39709288	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	11515904	39709288	11595278	90	17512											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46792623	46792623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CELSR1	NM_014246	exon13	c.G5722T	p.V1908L	CATCCACACAGTT	.	63	27	113	0	.	525	A	46792623	C	A	46792623	3	1	139	1	0	0	0	0	1	0	0	0	3221	478	17	3	3414	3	CELSR1	22	46792623	Missense_Mutation	SNP	C	TCGA-FV-A4ZQ-01A-11D-A25V-10	7083335	46792623	4511943	91	17513											
TNFRSF4	7293	ucsc.edu;bcgsc.ca	37	1	1146981	1146981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNFRSF4	NM_003327	exon7	c.T788C	p.I263T	TCTTGGATGGGGG	.	41	4	50	1	.	227	G	1146981	A	G	1146981	3	3	140	1	0	0	0	0	1	0	0	0	16294	333	12	2	49	2	TNFRSF4	1	1146981	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10		1146981	248103640	1	17514											
PADI1	29943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17563890	17563890	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI1	NM_013358	exon12	c.G1395A	p.S465S	CTACTCGGACTGG	.	49	33	88	1	.	68	A	17563890	G	A	17563890	2	1	140	1	0	0	0	0	0	0	0	1	11377	1103	39	1		1	PADI1	1	17563890	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	16416909	17563890	231686731	2	17515											
PADI3	51702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17609432	17609432	+	Missense_Mutation	SNP	G	G	A	rs35624745	bycluster;byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI3	NM_016233	exon16	c.G1853A	p.R618Q	AGGTGCGGTCCCT	.	36	14	55	0	G|0.967;A|0.033	132	A	17609432	G	A	17609432	3	1	140	1	0	0	0	0	1	0	0	0	11379	1116	39	1	1915	1	PADI3	1	17609432	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	45542	17609432	231641189	3	17516											
PADI6	353238	ucsc.edu;bcgsc.ca	37	1	17727872	17727872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI6	NM_207421	exon17	c.T2023C	p.C675R	GACATCTGTGCCT	.	45	4	58	0	.	113	C	17727872	T	C	17727872	3	2	140	1	0	0	0	0	1	0	0	0	11381	1580	55	2	2086	2	PADI6	1	17727872	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	118440	17727872	231522749	4	17517											
EIF4G3	8672	ucsc.edu;bcgsc.ca	37	1	21133841	21133841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EIF4G3	NM_001198801	exon35	c.G4837A	p.E1613K	CTGCTTCCCGCAG	.	46	4	72	0	.	91	T	21133841	C	T	21133841	3	4	140	1	0	0	0	0	1	0	0	0	5038	864	30	3	32	3	EIF4G3	1	21133841	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	3405969	21133841	228116780	5	17518											
USP48	84196	ucsc.edu;bcgsc.ca	37	1	22050539	22050539	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP48	NM_032236	exon12	c.A1500G	p.E500E	TGTTGATTCATCC	.	46	4	50	0	.	659	C	22050539	T	C	22050539	2	2	140	1	0	0	0	0	0	0	0	1	17076	1490	52	2		2	USP48	1	22050539	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	916698	22050539	227200082	6	17519											
NCDN	23154	ucsc.edu;bcgsc.ca	37	1	36026742	36026742	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCDN	NM_001014839	exon4	c.A990G	p.K330K	GGTGAAAGAGGAT	.	40	4	52	1	.	155	G	36026742	A	G	36026742	2	3	140	1	0	0	0	0	0	0	0	1	10214	69	3	2		2	NCDN	1	36026742	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	13976203	36026742	213223879	7	17520											
NFYC	4802	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41215259	41215259	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFYC	NM_001142587	exon4	c.A192G	p.E64E	TGCAGAAGCGCCT	.	56	13	84	1	.	289	G	41215259	A	G	41215259	2	3	140	1	0	0	0	0	0	0	0	1	10391	69	3	2		2	NFYC	1	41215259	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	5188517	41215259	208035362	8	17521											
LEPRE1	64175	ucsc.edu;bcgsc.ca	37	1	43224989	43224989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LEPRE1	NM_001146289	exon3	c.G691T	p.A231S	GCAGCGCCGCCTC	.	50	5	69	0	.	94	A	43224989	C	A	43224989	3	1	140	1	0	0	0	0	1	0	0	0	8729	739	26	3	1590	3	LEPRE1	1	43224989	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2009730	43224989	206025632	9	17522											
KDM4A	9682	ucsc.edu;bcgsc.ca	37	1	44132198	44132198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM4A	NM_014663	exon7	c.T749C	p.L250P	TAATGCTGAAGAA	.	30	4	49	0	.	227	C	44132198	T	C	44132198	3	2	140	1	0	0	0	0	1	0	0	0	8128	1580	55	2	771	2	KDM4A	1	44132198	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	907209	44132198	205118423	10	17523											
FAF1	11124	ucsc.edu;bcgsc.ca	37	1	50941323	50941323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAF1	NM_007051	exon18	c.T1682C	p.L561P	GGAGGCAGGGCTT	.	34	4	36	0	.	652	G	50941323	A	G	50941323	3	3	140	1	0	0	0	0	1	0	0	0	5369	188	7	2	278	2	FAF1	1	50941323	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	6809125	50941323	198309298	11	17524											
AMPD1	270	ucsc.edu;bcgsc.ca	37	1	115217493	115217493	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMPD1	NM_000036	exon13	c.G1779A	p.K593K	TCGTTCCCTGGGG	.	50	6	65	0	.	293	T	115217493	C	T	115217493	2	4	140	1	0	0	0	0	0	0	0	1	585	637	22	3		3	AMPD1	1	115217493	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	64276170	115217493	134033128	12	17525											
CD101	9398	ucsc.edu;bcgsc.ca	37	1	117560028	117560028	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD101	NM_001256109	exon5	c.G1545A	p.E515E	ATCTGAGAAGTCT	.	42	4	68	0	.	94	A	117560028	G	A	117560028	2	1	140	1	0	0	0	0	0	0	0	1	2962	933	33	3		3	CD101	1	117560028	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	2342535	117560028	131690593	13	17526											
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151679702	151679702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CELF3	NM_007185	exon8	c.G841A	p.G281S	TGTAGCCGTTGAC	.	125	17	103	0	.	91	T	151679702	C	T	151679702	3	4	140	1	0	0	0	0	1	0	0	0	3217	652	23	1	576	1	CELF3	1	151679702	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	34119674	151679702	97570919	14	17527											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164768969	164768969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PBX1	NM_001204963	exon4	c.C544T	p.L182F	ATGAATCTCCTGC	.	83	16	58	0	.	659	T	164768969	C	T	164768969	3	4	140	1	0	0	0	0	1	0	0	0	11492	913	32	3	558	3	PBX1	1	164768969	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	13089267	164768969	84481652	15	17528											
RXRG	6258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165376062	165376062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXRG	NM_006917	exon9	c.G1231A	p.E411K	GCTGTTCCGGATA	.	74	7	34	0	.	186	T	165376062	C	T	165376062	3	4	140	1	0	0	0	0	1	0	0	0	13765	864	30	3	168	3	RXRG	1	165376062	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	607093	165376062	83874559	16	17529											
SERPINC1	462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173878764	173878764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SERPINC1	NM_000488	exon5	c.G1079A	p.G360D	CTGAAGCCGTCCT	.	40	7	34	0	.	227	T	173878764	C	T	173878764	3	4	140	1	0	0	0	0	1	0	0	0	14109	739	26	3	327	3	SERPINC1	1	173878764	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	8502702	173878764	75371857	17	17530											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182852382	182852382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX9	NM_001357	exon25	c.A3023T	p.E1008V	ATAAGGAAAAGAG	.	156	83	129	0	.	92	T	182852382	A	T	182852382	3	4	140	1	0	0	0	0	1	0	0	0	4516	246	9	4	3117	4	DHX9	1	182852382	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	8973618	182852382	66398239	18	17531											
YOD1	55432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207224106	207224106	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YOD1	NM_018566	exon1	c.C270T	p.L90L	TCCGACGAGGATT	.	123	11	68	0	.	522	A	207224106	G	A	207224106	2	1	140	1	0	0	0	0	0	0	0	1	17485	1045	37	1		1	YOD1	1	207224106	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	24371724	207224106	42026515	19	17532											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207641906	207641906	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CR2	NM_001006658	exon3	c.C480T	p.I160I	TATGATCCACAAT	.	293	160	239	0	.	232	T	207641906	C	T	207641906	2	4	140	1	0	0	0	0	0	0	0	1	3842	845	30	3		3	CR2	1	207641906	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	417800	207641906	41608715	20	17533											
PTPN14	5784	broad.mit.edu;bcgsc.ca	37	1	214531354	214531354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN14	NM_005401	exon19	c.C3475A	p.Q1159K	TCCTCTGCTCCCT	.	144	7	103	0	.	290	T	214531354	G	T	214531354	3	4	140	1	0	0	0	0	1	0	0	0	12783	1328	46	3	92	3	PTPN14	1	214531354	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	6889448	214531354	34719267	21	17534											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233397906	233397906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCNXL2	NM_014801	exon3	c.A365G	p.N122S	TGCCTATTATTGC	.	144	19	108	0	.	91	C	233397906	T	C	233397906	3	2	140	1	0	0	0	0	1	0	0	0	11592	1493	52	2	6176	2	PCNXL2	1	233397906	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	18866552	233397906	15852715	22	17535											
PLD5	200150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	242451667	242451667	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLD5	NM_152666	exon4	c.T492A	p.C164X	TACCTGACATGCT	.	561	61	424	0	.	96	T	242451667	A	T	242451667	4	4	140	1	0	0	0	0	0	1	0	0	12049	273	10	4	1150	4	PLD5	1	242451667	Nonsense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	9053761	242451667	6798954	23	17536											
ADSS	159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	244595870	244595870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADSS	NM_001126	exon4	c.T383A	p.I128N	GATATAATAAGCC	.	783	32	572	0	.	229	T	244595870	A	T	244595870	3	4	140	1	0	0	0	0	1	0	0	0	347	101	4	4	1027	4	ADSS	1	244595870	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	2144203	244595870	4654751	24	17537											
FAM179A	165186	ucsc.edu;bcgsc.ca	37	2	29259442	29259442	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM179A	NM_199280	exon18	c.C2454A	p.S818S	GGATTCCAACAAG	.	56	5	74	0	.	26	A	29259442	C	A	29259442	2	1	140	1	0	0	0	0	0	0	0	1	5505	581	21	3		3	FAM179A	2	29259442	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		29259442	213939931	25	17538											
ALK	238	ucsc.edu;bcgsc.ca	37	2	29445233	29445233	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALK	NM_004304	exon22	c.C3492T	p.F1164F	CATGAGGAAATCC	.	26	4	43	0	.	3833	A	29445233	G	A	29445233	2	1	140	1	0	0	0	0	0	0	0	1	525	1165	41	3		3	ALK	2	29445233	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	185791	29445233	213754140	26	17539											
ALK	238	ucsc.edu;bcgsc.ca	37	2	29455312	29455312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALK	NM_004304	exon15	c.G2490T	p.M830I	ATCCTTCATCTGA	.	18	5	33	0	.	3833	A	29455312	C	A	29455312	3	1	140	1	0	0	0	0	1	0	0	0	525	826	29	3	2432	3	ALK	2	29455312	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	10079	29455312	213744061	27	17540											
SRBD1	55133	ucsc.edu;bcgsc.ca	37	2	45832562	45832562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SRBD1	NM_018079	exon2	c.A19G	p.R7G	TCGCTCTTCTTGG	.	44	4	47	0	.	90	C	45832562	T	C	45832562	3	2	140	1	0	0	0	0	1	0	0	0	15132	1617	56	2	3048	2	SRBD1	2	45832562	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	16377250	45832562	197366811	28	17541											
CCT4	10575	ucsc.edu;bcgsc.ca	37	2	62099701	62099701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCT4	NM_006430	exon11	c.G1148A	p.G383E	GTTTTTCCAGGGC	.	57	6	98	0	.	92	T	62099701	C	T	62099701	3	4	140	1	0	0	0	0	1	0	0	0	2955	855	30	3	487	3	CCT4	2	62099701	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	16267139	62099701	181099672	29	17542											
DYSF	8291	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71778194	71778194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYSF	NM_001130982	exon19	c.C1642A	p.P548T	TTCCTCCCCACTT	.	79	24	92	2	.	158	A	71778194	C	A	71778194	3	1	140	1	0	0	0	0	1	0	0	0	4859	623	22	3	1808	3	DYSF	2	71778194	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	9678493	71778194	171421179	30	17543											
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74901762	74901762	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA4F	NM_004263	exon8	c.G960C	p.G320G	GCTTGGGGCAGGG	.	93	27	140	0	.	93	C	74901762	G	C	74901762	2	2	140	1	0	0	0	0	0	0	0	1	14035	1219	43	4		4	SEMA4F	2	74901762	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3123568	74901762	168297611	31	17544											
REG1B	5968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79314699	79314699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REG1B	NM_006507	exon2	c.C40A	p.L14M	ACATCAGGGAGGA	.	106	30	148	0	.	91	T	79314699	G	T	79314699	3	4	140	1	0	0	0	0	1	0	0	0	13211	991	35	3	480	3	REG1B	2	79314699	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	4412937	79314699	163884674	32	17545											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84852030	84852030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH6	NM_001370	exon29	c.G4358T	p.R1453L	AGGATCGCTGCTA	.	86	34	129	0	.	69	T	84852030	G	T	84852030	3	4	140	1	0	0	0	0	1	0	0	0	4605	1087	38	1	4468	1	DNAH6	2	84852030	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	5537331	84852030	158347343	33	17546											
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84896485	84896485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH6	NM_001370	exon38	c.A6157T	p.I2053F	GAACGAATCATAC	.	106	5	141	0	.	69	T	84896485	A	T	84896485	3	4	140	1	0	0	0	0	1	0	0	0	4605	101	4	4	6303	4	DNAH6	2	84896485	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	44455	84896485	158302888	34	17547											
CAPG	822	ucsc.edu;bcgsc.ca	37	2	85628952	85628952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAPG	NM_001256140	exon3	c.T152C	p.L51P	TTGTGCAGCACTA	.	61	7	87	0	.	204	G	85628952	A	G	85628952	3	3	140	1	0	0	0	0	1	0	0	0	2621	188	7	2	926	2	CAPG	2	85628952	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	732467	85628952	157570421	35	17548											
SMYD1	150572	ucsc.edu;bcgsc.ca	37	2	88410004	88410004	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMYD1	NM_198274	exon10	c.C1446T	p.S482S	GCCATCCCCAGCT	.	45	4	47	0	.	229	T	88410004	C	T	88410004	2	4	140	1	0	0	0	0	0	0	0	1	14821	610	22	3		3	SMYD1	2	88410004	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2781052	88410004	154789369	36	17549											
FER1L5	90342	ucsc.edu;bcgsc.ca	37	2	97338889	97338889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FER1L5	NM_001113382	exon18	c.C1552A	p.L518M	AAAGAGCTGATCC	.	51	7	56	0	.	23	A	97338889	C	A	97338889	3	1	140	1	0	0	0	0	1	0	0	0	5814	796	28	3	1622	3	FER1L5	2	97338889	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	8928885	97338889	145860484	37	17550											
PAX8	7849	ucsc.edu;bcgsc.ca	37	2	114002034	114002034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAX8	NM_013952	exon4	c.A359G	p.D120G	ACAGTGTCATTGT	.	30	4	24	0	.	684	C	114002034	T	C	114002034	3	2	140	1	0	0	0	0	1	0	0	0	11485	1667	58	2	904	2	PAX8	2	114002034	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	16663145	114002034	129197339	38	17551											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168097234	168097234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XIRP2	NM_001199143	exon8	c.G1129T	p.V377F	CAATATGTTCAAG	.	164	71	184	0	.	104	T	168097234	G	T	168097234	3	4	140	1	0	0	0	0	1	0	0	0	17427	1377	48	3	1052	3	XIRP2	2	168097234	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	54095200	168097234	75102139	39	17552											
PDE1A	5136	ucsc.edu;bcgsc.ca	37	2	183053724	183053724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE1A	NM_001258312	exon12	c.G1249A	p.V417M	GGGCCACCATGGT	.	43	4	37	0	.	93	T	183053724	C	T	183053724	3	4	140	1	0	0	0	0	1	0	0	0	11633	507	18	3	464	3	PDE1A	2	183053724	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	14956490	183053724	60145649	40	17553											
COL5A2	1290	ucsc.edu;bcgsc.ca	37	2	189927993	189927993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL5A2	NM_000393	exon27	c.G1774T	p.A592S	CTGGCGCACCCTA	.	23	4	28	0	.	92	A	189927993	C	A	189927993	3	1	140	1	0	0	0	0	1	0	0	0	3697	710	25	3	2837	3	COL5A2	2	189927993	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	6874269	189927993	53271380	41	17554											
MPP4	58538	ucsc.edu;bcgsc.ca	37	2	202552052	202552052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MPP4	NM_033066	exon5	c.C322A	p.Q108K	GCTCTTGGATCTC	.	49	4	67	0	.	22	T	202552052	G	T	202552052	3	4	140	1	0	0	0	0	1	0	0	0	9736	1357	47	3	1663	3	MPP4	2	202552052	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	12624059	202552052	40647321	42	17555											
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216238044	216238044	+	Splice_Site	SNP	C	C	G	rs111852829	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FN1	NM_212482	exon40	c.6247+1G>C	.	CTCTTACCTGTCT	.	238	36	253	1	G|1.000	584	G	216238044	C	G	216238044	5	3	140	1	0	0	0	0	0	0	1	0	5962	521	18	4	1217	4	FN1	2	216238044	Splice_Site	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	13685992	216238044	26961329	43	17556											
ALPI	248	broad.mit.edu;bcgsc.ca	37	2	233322981	233322981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALPI	NM_001631	exon9	c.A1046G	p.E349G	TCACTGAGGCGGT	.	99	5	100	0	.	90	G	233322981	A	G	233322981	3	3	140	1	0	0	0	0	1	0	0	0	543	304	11	2	1080	2	ALPI	2	233322981	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	17084937	233322981	9876392	44	17557											
ANKMY1	51281	ucsc.edu;bcgsc.ca	37	2	241492433	241492433	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKMY1	NM_017844	exon4	c.G378A	p.L126L	GGTACCCAGGCCA	.	51	6	51	0	.	90	T	241492433	C	T	241492433	2	4	140	1	0	0	0	0	0	0	0	1	634	581	21	3		3	ANKMY1	2	241492433	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	8169452	241492433	1706940	45	17558											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	423911	423911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHL1	NM_001253388	exon15	c.G1926T	p.R642S	GAACAGGAGTGTT	.	78	27	95	0	.	583	T	423911	G	T	423911	3	4	140	1	0	0	0	0	1	0	0	0	3349	1165	41	3	1984	3	CHL1	3	423911	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10		423911	197598519	46	17559											
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3186326	3186329	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRNT1	NM_182916	exon5	c.540_543del	p.180_181del	TAAGAAAGTTAGA	.	155	23	204	0	.	90	-	3186329	AGTT	-	3186326	7	5	140	1	0	1	0	1	0	0	0	0	16570	69	3	0	554	0	TRNT1	3	3186326	Frame_Shift_Del	DEL	AGTT	TCGA-G3-A25S-01A-11D-A16V-10	2762415	3186326	194836104	47	17560											
TTLL3	26140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9870684	9870685	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTLL3	NM_001025930	exon10	c.1588_1589del	p.530_530del	CACCTGGAGAACT	.	36	15	50	0	.	585	-	9870685	GA	-	9870684	7	5	140	1	0	1	0	1	0	0	0	0	16725	1175	41	0	1193	0	TTLL3	3	9870684	Frame_Shift_Del	DEL	GA	TCGA-G3-A25S-01A-11D-A16V-10	6684358	9870684	188151746	48	17561											
OSBPL10	114884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	31705616	31705616	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL10	NM_017784	exon11	c.C2205T	p.R735R	GTTCTCGCGCTTC	.	63	13	64	0	.	69	A	31705616	G	A	31705616	2	1	140	1	0	0	0	0	0	0	0	1	11275	1074	38	1		1	OSBPL10	3	31705616	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	21834932	31705616	166316814	49	17562											
OSBPL10	114884	ucsc.edu;bcgsc.ca	37	3	31871717	31871717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL10	NM_017784	exon4	c.C544T	p.P182S	AGCTTGGAGCACT	.	36	4	46	0	.	69	A	31871717	G	A	31871717	3	1	140	1	0	0	0	0	1	0	0	0	11275	1174	41	3	1786	3	OSBPL10	3	31871717	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	166101	31871717	166150713	50	17563											
CTNNB1	1499	broad.mit.edu;bcgsc.ca	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	TACCTGGACTCTG	.	155	8	144	0	G|1.000;T|0.000	24361	A	41266097	G	A	41266097	3	1	140	1	0	0	0	0	1	0	0	0	4016	1174	41	3	100	3	CTNNB1	3	41266097	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	9394380	41266097	156756333	51	17564											
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694892	49694892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BSN	NM_003458	exon5	c.C7903T	p.R2635C	CTTCCCCGCCACT	.	34	7	54	0	.	97	T	49694892	C	T	49694892	3	4	140	1	0	0	0	0	1	0	0	0	1530	652	23	1	7921	1	BSN	3	49694892	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	8428795	49694892	148327538	52	17565											
RNF123	63891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49753579	49753579	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF123	NM_022064	exon34	c.G3384C	p.L1128L	GAACCTGTTTGAT	.	47	8	28	0	.	584	C	49753579	G	C	49753579	2	2	140	1	0	0	0	0	0	0	0	1	13433	1364	48	4		4	RNF123	3	49753579	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	58687	49753579	148268851	53	17566											
GRM2	2912	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	51749875	51749875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRM2	NM_000839	exon4	c.G2086A	p.A696T	GTGGTCGCCTGGC	.	20	4	42	0	.	522	A	51749875	G	A	51749875	3	1	140	1	0	0	0	0	1	0	0	0	6797	1087	38	1	2096	1	GRM2	3	51749875	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1996296	51749875	146272555	54	17567											
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111764780	111764780	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMPRSS7	NM_001042575	exon4	c.G342A	p.V114V	CTCTGTGGTACTA	.	322	117	372	0	.	70	A	111764780	G	A	111764780	2	1	140	1	0	0	0	0	0	0	0	1	16249	1335	47	3		3	TMPRSS7	3	111764780	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	60014905	111764780	86257650	55	17568											
WDR52	55779	ucsc.edu;bcgsc.ca	37	3	113152468	113152468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR52	NM_001164496	exon2	c.T44C	p.V15A	GATGTAACTGATT	.	40	4	63	0	.	90	G	113152468	A	G	113152468	3	3	140	1	0	0	0	0	1	0	0	0	17301	43	2	2	5671	2	WDR52	3	113152468	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1387688	113152468	84869962	56	17569											
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118621409	118621409	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGSF11	NM_001015887	exon7	c.T1254C	p.P418P	CATGACAGGTACT	.	94	8	105	0	.	90	G	118621409	A	G	118621409	2	3	140	1	0	0	0	0	0	0	0	1	7598	175	7	2		2	IGSF11	3	118621409	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	5468941	118621409	79401021	57	17570											
C3orf30	152405	ucsc.edu;bcgsc.ca	37	3	118870136	118870136	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C3orf30	NM_152539	exon3	c.A1608G	p.V536V	CCAGGTATAGAAT	.	40	5	41	0	.	92	G	118870136	A	G	118870136	2	3	140	1	0	0	0	0	0	0	0	1	2220	436	16	2		2	C3orf30	3	118870136	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	248727	118870136	79152294	58	17571											
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123665744	123665744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC14	NM_022757	exon7	c.T1128A	p.D376E	CTGTACATCCTTC	.	63	9	74	0	.	68	T	123665744	A	T	123665744	3	4	140	1	0	0	0	0	1	0	0	0	2773	214	8	4	1634	4	CCDC14	3	123665744	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	4795608	123665744	74356686	59	17572											
PLXNA1	5361	ucsc.edu;bcgsc.ca	37	3	126737196	126737196	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLXNA1	NM_032242	exon19	c.G3720T	p.L1240L	CAGCCTGCTGACG	.	53	4	63	0	.	93	T	126737196	G	T	126737196	2	4	140	1	0	0	0	0	0	0	0	1	12119	1306	46	3		3	PLXNA1	3	126737196	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3071452	126737196	71285234	60	17573											
MBD4	8930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129155490	129155490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD4	NM_003925	exon3	c.A997T	p.I333L	TGTTTATGATGCC	.	143	23	180	0	.	228	A	129155490	T	A	129155490	3	1	140	1	0	0	0	0	1	0	0	0	9346	1464	51	4	769	4	MBD4	3	129155490	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	2418294	129155490	68866940	61	17574											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130289820	130289820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL6A6	NM_001102608	exon6	c.G2560A	p.A854T	AAGTATGCTGATG	.	88	16	93	0	.	76	A	130289820	G	A	130289820	3	1	140	1	0	0	0	0	1	0	0	0	3703	1319	46	3	2582	3	COL6A6	3	130289820	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1134330	130289820	67732610	62	17575											
MED12L	116931	ucsc.edu;bcgsc.ca	37	3	150873994	150873994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED12L	NM_053002	exon5	c.G603T	p.K201N	GGCCAAGATTTCT	.	33	4	41	1	.	576	T	150873994	G	T	150873994	3	4	140	1	0	0	0	0	1	0	0	0	9429	933	33	3	621	3	MED12L	3	150873994	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	20584174	150873994	47148436	63	17576											
IGSF10	285313	ucsc.edu;bcgsc.ca	37	3	151155692	151155692	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGSF10	NM_178822	exon6	c.T6657C	p.S2219S	ATCCCCACTGGGA	.	39	4	49	0	.	102	G	151155692	A	G	151155692	2	3	140	1	0	0	0	0	0	0	0	1	7597	156	6	2		2	IGSF10	3	151155692	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	281698	151155692	46866738	64	17577											
AADAC	13	ucsc.edu;bcgsc.ca	37	3	151545702	151545702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AADAC	NM_001086	exon5	c.C942A	p.F314L	AGGGTTCCTAGAT	.	35	4	39	0	.	280	A	151545702	C	A	151545702	3	1	140	1	0	0	0	0	1	0	0	0	10	854	30	3	960	3	AADAC	3	151545702	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	390010	151545702	46476728	65	17578											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173322666	173322666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLGN1	NM_014932	exon3	c.G278T	p.R93L	GGGAACGTCGTTT	.	94	39	102	0	.	231	T	173322666	G	T	173322666	3	4	140	1	0	0	0	0	1	0	0	0	10461	1145	40	1	280	1	NLGN1	3	173322666	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	21776964	173322666	24699764	66	17579											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173525610	173525610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLGN1	NM_014932	exon4	c.C634A	p.L212I	TATCGACTTGGAG	.	97	52	137	0	.	231	A	173525610	C	A	173525610	3	1	140	1	0	0	0	0	1	0	0	0	10461	565	20	3	640	3	NLGN1	3	173525610	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	202944	173525610	24496820	67	17580											
MFN1	55669	broad.mit.edu;bcgsc.ca	37	3	179069781	179069781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MFN1	NM_033540	exon3	c.A206G	p.E69G	TTGGTGAGGTGCT	.	206	11	230	1	.	155	G	179069781	A	G	179069781	3	3	140	1	0	0	0	0	1	0	0	0	9523	304	11	2	212	2	MFN1	3	179069781	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	5544171	179069781	18952649	68	17581											
RNF168	165918	ucsc.edu;bcgsc.ca	37	3	196229935	196229935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF168	NM_152617	exon1	c.A110G	p.K37R	CACGGTTTACACA	.	43	5	78	0	.	90	C	196229935	T	C	196229935	3	2	140	1	0	0	0	0	1	0	0	0	13459	1841	64	2	1629	2	RNF168	3	196229935	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	17160154	196229935	1792495	69	17582											
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1957733	1957733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WHSC1	NM_133335	exon15	c.A2699G	p.H900R	TTTGCCATCCCAA	.	89	14	110	0	.	664	G	1957733	A	G	1957733	3	3	140	1	0	0	0	0	1	0	0	0	17359	217	8	2	2829	2	WHSC1	4	1957733	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10		1957733	189196543	70	17583											
ZFYVE28	57732	ucsc.edu;bcgsc.ca	37	4	2275874	2275874	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFYVE28	NM_020972	exon9	c.T2121C	p.A707A	TGGGGCAGCATGC	.	41	5	53	0	.	93	G	2275874	A	G	2275874	2	3	140	1	0	0	0	0	0	0	0	1	17667	175	7	2		2	ZFYVE28	4	2275874	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	318141	2275874	188878402	71	17584											
TADA2B	93624	ucsc.edu;bcgsc.ca	37	4	7055982	7055982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TADA2B	NM_152293	exon2	c.A464G	p.D155G	CGCTGGACATCTC	.	30	4	50	0	.	68	G	7055982	A	G	7055982	3	3	140	1	0	0	0	0	1	0	0	0	15508	275	10	2	470	2	TADA2B	4	7055982	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	4780108	7055982	184098294	72	17585											
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15839760	15839760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD38	NM_001775	exon5	c.T631C	p.S211P	AATGGATCCCGCA	.	54	33	59	0	.	92	C	15839760	T	C	15839760	3	2	140	1	0	0	0	0	1	0	0	0	3009	1435	50	2	649	2	CD38	4	15839760	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	8783778	15839760	175314516	73	17586											
PROM1	8842	ucsc.edu;bcgsc.ca	37	4	16002203	16002203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PROM1	NM_006017	exon13	c.G1494T	p.M498I	AATGATCATCAAT	.	44	4	55	0	.	207	A	16002203	C	A	16002203	3	1	140	1	0	0	0	0	1	0	0	0	12555	826	29	3	1159	3	PROM1	4	16002203	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	162443	16002203	175152073	74	17587											
RBM47	54502	ucsc.edu;bcgsc.ca	37	4	40440519	40440519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM47	NM_001098634	exon4	c.T392C	p.L131P	TTGTTGAGCTCAC	.	44	5	59	0	.	25	G	40440519	A	G	40440519	3	3	140	1	0	0	0	0	1	0	0	0	13141	304	11	2	1405	2	RBM47	4	40440519	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	24438316	40440519	150713757	75	17588											
GRXCR1	389207	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	42895631	42895631	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRXCR1	NM_001080476	exon1	c.C348T	p.G116G	TGCTGGCCAGGCT	.	20	7	50	1	.	23	T	42895631	C	T	42895631	2	4	140	1	0	0	0	0	0	0	0	1	6812	726	26	3		3	GRXCR1	4	42895631	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2455112	42895631	148258645	76	17589											
GRSF1	2926	ucsc.edu;bcgsc.ca	37	4	71698873	71698873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_002092	exon3	c.A632G	p.E211G	TGCTTCTCTAAGG	.	35	4	77	0	.	.	C	71698873	T	C	71698873	3	2	140	1	0	0	0	0	1	0	0	0	6809	1551	54	2	838	2	GRSF1	4	71698873	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	28803242	71698873	119455403	77	17590											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283297	74283298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALB	NM_000477	exon11	c.1339_1340insT	p.L447fs	CCAACTCTTGTAG	.	51	42	112	0	.	96	T	74283298	-	T	74283297	7	5	140	1	0	1	1	0	0	0	0	0	486	913	32	0	1381	0	ALB	4	74283297	Frame_Shift_Ins	INS	-	TCGA-G3-A25S-01A-11D-A16V-10	2584424	74283297	116870979	78	17591											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALB	NM_000477	exon11	c.1428_1428del	p.476_476del	AGACTATGTGAGT	.	23	20	61	0	.	96	-	74283387	TG	-	74283386	7	5	140	1	0	1	0	1	0	0	0	0	486	1478	51	0	1470	0	ALB	4	74283386	Frame_Shift_Del	DEL	TG	TCGA-G3-A25S-01A-11D-A16V-10	89	74283386	116870890	79	17592											
PPP3CA	5530	ucsc.edu;bcgsc.ca	37	4	102030193	102030193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP3CA	NM_000944	exon3	c.T302C	p.L101P	TCAAAGAGCTTCA	.	39	4	45	0	.	227	G	102030193	A	G	102030193	3	3	140	1	0	0	0	0	1	0	0	0	12397	304	11	2	1311	2	PPP3CA	4	102030193	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	27746807	102030193	89124083	80	17593											
SYNPO2	171024	ucsc.edu;bcgsc.ca	37	4	119952907	119952907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNPO2	NM_001128934	exon4	c.T2977C	p.S993P	AAGTCATCAGTCA	.	36	4	75	0	.	92	C	119952907	T	C	119952907	3	2	140	1	0	0	0	0	1	0	0	0	15454	1435	50	2	2991	2	SYNPO2	4	119952907	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	17922714	119952907	71201369	81	17594											
INPP4B	8821	ucsc.edu;bcgsc.ca	37	4	143043367	143043367	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INPP4B	NM_003866	exon22	c.C2049A	p.A683A	GCCAACGGCCATG	.	48	5	54	0	.	228	T	143043367	G	T	143043367	2	4	140	1	0	0	0	0	0	0	0	1	7753	1103	39	1		1	INPP4B	4	143043367	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	23090460	143043367	48110909	82	17595											
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146859553	146859553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF827	NM_178835	exon1	c.A7T	p.R3W	TCCTCCTGGGCAT	.	96	68	160	0	.	22	A	146859553	T	A	146859553	3	1	140	1	0	0	0	0	1	0	0	0	18177	1579	55	4	3278	4	ZNF827	4	146859553	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	3816186	146859553	44294723	83	17596											
GUCY1B3	2983	ucsc.edu;bcgsc.ca	37	4	156715007	156715007	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_000857	exon6	c.496-1G>T	.	TATCCAGGTTATT	.	44	4	97	1	.	.	T	156715007	G	T	156715007	5	4	140	1	0	0	0	0	0	0	1	0	6895	1014	35	3	517	3	GUCY1B3	4	156715007	Splice_Site	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	9855454	156715007	34439269	84	17597											
RXFP1	59350	ucsc.edu;bcgsc.ca	37	4	159572966	159572966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXFP1	NM_001253727	exon18	c.C2114A	p.P705Q	TGAACCCAATTCT	.	30	4	71	0	.	91	A	159572966	C	A	159572966	3	1	140	1	0	0	0	0	1	0	0	0	13759	594	21	3	2103	3	RXFP1	4	159572966	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2857959	159572966	31581310	85	17598											
PDLIM3	27295	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186425735	186425735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDLIM3	NM_014476	exon7	c.C799G	p.R267G	CCGGACGGTCATC	.	16	16	40	0	.	92	C	186425735	G	C	186425735	3	2	140	1	0	0	0	0	1	0	0	0	11681	1116	39	4	303	4	PDLIM3	4	186425735	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	26852769	186425735	4728541	86	17599											
SPEF2	79925	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	35618118	35618118	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPEF2	NM_024867	exon1	c.C19T	p.Q7X	CTGTGCCAGTGGC	.	118	15	99	0	.	26	T	35618118	C	T	35618118	4	4	140	1	0	0	0	0	0	1	0	0	15034	595	21	3	21	3	SPEF2	5	35618118	Nonsense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		35618118	145297142	87	17600											
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161948	43161948	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF131	NM_003432	exon6	c.T867C	p.T289T	AAGAACTGGGAAA	.	145	78	169	0	.	90	C	43161948	T	C	43161948	2	2	140	1	0	0	0	0	0	0	0	1	17718	1567	55	2		2	ZNF131	5	43161948	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	7543830	43161948	137753312	88	17601											
ISL1	3670	ucsc.edu;bcgsc.ca	37	5	50685754	50685754	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ISL1	NM_002202	exon4	c.C753T	p.P251P	GCAGCCCAATGAC	.	42	4	34	0	.	515	T	50685754	C	T	50685754	2	4	140	1	0	0	0	0	0	0	0	1	7856	581	21	3		3	ISL1	5	50685754	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	7523806	50685754	130229506	89	17602											
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95226823	95226823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ELL2	NM_012081	exon10	c.G1745T	p.G582V	TTTGAGCCTGGAG	.	145	86	119	0	.	90	A	95226823	C	A	95226823	3	1	140	1	0	0	0	0	1	0	0	0	5063	739	26	3	189	3	ELL2	5	95226823	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	44541069	95226823	85688437	90	17603											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118485268	118485268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DMXL1	NM_005509	exon18	c.C3746T	p.P1249L	AAGAACCTGTTAT	.	56	35	56	0	.	92	T	118485268	C	T	118485268	3	4	140	1	0	0	0	0	1	0	0	0	4594	681	24	3	3816	3	DMXL1	5	118485268	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	23258445	118485268	62429992	91	17604											
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120022233	120022233	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRR16	NM_016644	exon3	c.C675T	p.G225G	CCAAGGCCCTCCC	.	118	28	100	0	.	71	T	120022233	C	T	120022233	2	4	140	1	0	0	0	0	0	0	0	1	12589	726	26	3		3	PRR16	5	120022233	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1536965	120022233	60893027	92	17605											
FBN2	2201	ucsc.edu;bcgsc.ca	37	5	127730952	127730952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN2	NM_001999	exon9	c.T1094C	p.M365T	AAACACATGCCTG	.	38	5	30	0	.	146	G	127730952	A	G	127730952	3	3	140	1	0	0	0	0	1	0	0	0	5703	217	8	2	7872	2	FBN2	5	127730952	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	7708719	127730952	53184308	93	17606											
P4HA2	8974	ucsc.edu;bcgsc.ca	37	5	131552900	131552900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	P4HA2	NM_001017974	exon4	c.C321A	p.D107E	AGCTGAGTCCTGC	.	43	4	30	0	.	68	T	131552900	G	T	131552900	3	4	140	1	0	0	0	0	1	0	0	0	11357	1020	36	3	1398	3	P4HA2	5	131552900	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3821948	131552900	49362360	94	17607											
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132585166	132585166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FSTL4	NM_015082	exon7	c.G830A	p.R277K	GGTGGCCTCAGGT	.	91	13	74	0	.	91	T	132585166	C	T	132585166	3	4	140	1	0	0	0	0	1	0	0	0	6079	681	24	3	1738	3	FSTL4	5	132585166	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1032266	132585166	48330094	95	17608											
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138764241	138764241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAJC18	NM_152686	exon3	c.C359A	p.T120K	GCATCTGTTGCTC	.	81	26	60	0	.	227	T	138764241	G	T	138764241	3	4	140	1	0	0	0	0	1	0	0	0	4637	1377	48	3	741	3	DNAJC18	5	138764241	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	6179075	138764241	42151019	96	17609											
SPINK9	643394	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147718126	147718126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPINK9	NM_001040433	exon3	c.G173T	p.G58V	CTGATGGCAAAAC	.	469	131	370	2	.	22	T	147718126	G	T	147718126	3	4	140	1	0	0	0	0	1	0	0	0	15065	1203	42	3	183	3	SPINK9	5	147718126	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	8953885	147718126	33197134	97	17610											
PPARGC1B	133522	ucsc.edu;bcgsc.ca	37	5	149200062	149200062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPARGC1B	NM_133263	exon2	c.G145A	p.A49T	CTGGATGCCAGCG	.	25	4	27	0	.	186	A	149200062	G	A	149200062	3	1	140	1	0	0	0	0	1	0	0	0	12301	1319	46	3	158	3	PPARGC1B	5	149200062	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1481936	149200062	31715198	98	17611											
IL12B	3593	ucsc.edu;bcgsc.ca	37	5	158750288	158750288	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL12B	NM_002187	exon3	c.G138A	p.V46V	GAGGACCACCATT	.	44	5	53	1	.	90	T	158750288	C	T	158750288	2	4	140	1	0	0	0	0	0	0	0	1	7625	581	21	3		3	IL12B	5	158750288	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	9550226	158750288	22164972	99	17612											
EXOC2	55770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	592543	592543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC2	NM_018303	exon11	c.G1118A	p.C373Y	CCAATGCATTGCC	.	95	14	56	0	.	662	T	592543	C	T	592543	3	4	140	1	0	0	0	0	1	0	0	0	5302	710	25	3	1728	3	EXOC2	6	592543	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		592543	170522524	100	17613											
MYLK4	340156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2685624	2685624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYLK4	NM_001012418	exon6	c.G451A	p.E151K	TGATCTCGTTCTT	.	92	25	75	0	.	150	T	2685624	C	T	2685624	3	4	140	1	0	0	0	0	1	0	0	0	10059	893	31	1	743	1	MYLK4	6	2685624	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2093081	2685624	168429443	101	17614											
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22294684	22294684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRL	NM_000948	exon2	c.T158A	p.L53Q	TGGGACAGGACGA	.	270	56	142	0	.	90	T	22294684	A	T	22294684	3	4	140	1	0	0	0	0	1	0	0	0	12528	188	7	4	541	4	PRL	6	22294684	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	19609060	22294684	148820383	102	17615											
CDKN1A	1026	broad.mit.edu;bcgsc.ca	37	6	36651880	36651880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKN1A	NM_001220778	exon2	c.T2G	p.M1R	GCGCCATGTCAGA	.	50	47	57	1	.	872	G	36651880	T	G	36651880	3	3	140	1	0	0	0	0	1	0	0	0	3158	1464	51	5	4	5	CDKN1A	6	36651880	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	14357196	36651880	134463187	103	17616	96	2									
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	36651881	36651881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKN1A	NM_001220778	exon2	c.G3T	p.M1I	CGCCATGTCAGAA	.	50	45	56	0	.	872	T	36651881	G	T	36651881	3	4	140	1	0	0	0	0	1	0	0	0	3158	1377	48	3	5	3	CDKN1A	6	36651881	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1	36651881	134463186	104	17617	96	2									
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43274043	43274043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRIP3	NM_206922	exon6	c.G409A	p.V137M	ACATCACCTTCTC	.	53	50	43	0	.	91	T	43274043	C	T	43274043	3	4	140	1	0	0	0	0	1	0	0	0	3876	507	18	3	217	3	CRIP3	6	43274043	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	6622162	43274043	127841024	105	17618	97	2									
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43274045	43274046	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	p.K136V	ATCACCTTCTCAG	.	51	47	43	0	.	.	AC	43274046	TT	AC	43274045	3	1	140	1	0	0	0	0	1	0	0	0	3876	1609	56	4	219	4	CRIP3	6	43274045	Missense_Mutation	DNP	TT	TCGA-G3-A25S-01A-11D-A16V-10	2	43274045	127841022	106	17619	97	2									
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47681793	47681793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR115	NM_153838	exon6	c.G812A	p.G271E	TCTTAGGAATGGT	.	93	24	61	0	.	160	A	47681793	G	A	47681793	3	1	140	1	0	0	0	0	1	0	0	0	6632	1174	41	3	830	3	GPR115	6	47681793	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	4407748	47681793	123433274	107	17620											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51824795	51824795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKHD1	NM_170724	exon36	c.A5781T	p.R1927S	GGACCATCTCCGG	.	122	13	60	0	.	603	A	51824795	T	A	51824795	3	1	140	1	0	0	0	0	1	0	0	0	11971	1432	50	4	6610	4	PKHD1	6	51824795	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	4143002	51824795	119290272	108	17621											
PHF3	23469	ucsc.edu;bcgsc.ca	37	6	64390032	64390032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHF3	NM_015153	exon2	c.C376A	p.P126T	AGATCTCCAAGAA	.	41	4	72	1	.	229	A	64390032	C	A	64390032	3	1	140	1	0	0	0	0	1	0	0	0	11836	855	30	3	382	3	PHF3	6	64390032	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	12565237	64390032	106725035	109	17622											
CD109	135228	ucsc.edu;bcgsc.ca	37	6	74473386	74473386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD109	NM_133493	exon10	c.C1085T	p.P362L	TGAAGCCATCTCT	.	48	4	103	0	.	155	T	74473386	C	T	74473386	3	4	140	1	0	0	0	0	1	0	0	0	2963	594	21	3	1123	3	CD109	6	74473386	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	10083354	74473386	96641681	110	17623											
HTR1B	3351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	78172410	78172410	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HTR1B	NM_000863	exon1	c.C711T	p.S237S	AATCCGGGAGCGG	.	23	19	37	0	.	90	A	78172410	G	A	78172410	2	1	140	1	0	0	0	0	0	0	0	1	7437	1219	43	3		3	HTR1B	6	78172410	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3699024	78172410	92942657	111	17624											
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246970	97246970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR63	NM_030784	exon2	c.T638C	p.L213S	ACGGCTAAAGGAA	.	25	15	58	0	.	92	G	97246970	A	G	97246970	3	3	140	1	0	0	0	0	1	0	0	0	6704	372	13	2	625	2	GPR63	6	97246970	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	19074560	97246970	73868097	112	17625											
RWDD1	51389	ucsc.edu;bcgsc.ca	37	6	116901493	116901493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RWDD1	NM_015952	exon2	c.G109A	p.V37M	ATTACTGTGACGT	.	31	4	65	0	.	92	A	116901493	G	A	116901493	3	1	140	1	0	0	0	0	1	0	0	0	13754	1377	48	3	115	3	RWDD1	6	116901493	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	19654523	116901493	54213574	113	17626											
TMEM200A	114801	ucsc.edu;bcgsc.ca	37	6	130762511	130762511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM200A	NM_001258277	exon3	c.T944C	p.L315P	ACAACCTCAAAAG	.	42	4	82	1	.	23	C	130762511	T	C	130762511	3	2	140	1	0	0	0	0	1	0	0	0	16120	1551	54	2	946	2	TMEM200A	6	130762511	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	13861018	130762511	40352556	114	17627											
TBPL1	9519	ucsc.edu;bcgsc.ca	37	6	134308131	134308131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBPL1	NM_004865	exon7	c.G514A	p.E172K	GCTGTGGAACAGA	.	37	4	69	0	.	90	A	134308131	G	A	134308131	3	1	140	1	0	0	0	0	1	0	0	0	15642	1175	41	3	536	3	TBPL1	6	134308131	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3545620	134308131	36806936	115	17628											
CNKSR3	154043	ucsc.edu;bcgsc.ca	37	6	154727645	154727645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNKSR3	NM_173515	exon13	c.G1511T	p.R504M	TAGCACCTGCTTC	.	43	4	89	0	.	26	A	154727645	C	A	154727645	3	1	140	1	0	0	0	0	1	0	0	0	3608	681	24	3	160	3	CNKSR3	6	154727645	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	20419514	154727645	16387422	116	17629											
TMEM181	57583	ucsc.edu;bcgsc.ca	37	6	159005044	159005044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM181	NM_020823	exon4	c.T638C	p.L213P	TATGGCTGACATG	.	32	4	80	0	.	70	C	159005044	T	C	159005044	3	2	140	1	0	0	0	0	1	0	0	0	16097	1580	55	2	652	2	TMEM181	6	159005044	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	4277399	159005044	12110023	117	17630											
EZR	7430	ucsc.edu;bcgsc.ca	37	6	159197498	159197498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EZR	NM_003379	exon7	c.G737A	p.R246K	ATGTTCCTGATTT	.	43	4	68	0	.	70	T	159197498	C	T	159197498	3	4	140	1	0	0	0	0	1	0	0	0	5335	681	24	3	1051	3	EZR	6	159197498	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	192454	159197498	11917569	118	17631											
TCP1	6950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160206479	160206479	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCP1	NM_030752	exon5	c.C427G	p.L143V	TTCCCAGTTCATC	.	49	15	73	0	.	153	C	160206479	G	C	160206479	3	2	140	1	0	0	0	0	1	0	0	0	15706	1020	36	4	1275	4	TCP1	6	160206479	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1008981	160206479	10908588	119	17632											
TTYH3	80727	ucsc.edu;bcgsc.ca	37	7	2695773	2695773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTYH3	NM_025250	exon10	c.C1068A	p.N356K	GGTGAACCTGCAG	.	65	7	66	0	.	90	A	2695773	C	A	2695773	3	1	140	1	0	0	0	0	1	0	0	0	16738	506	18	3	1106	3	TTYH3	7	2695773	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		2695773	156442890	120	17633											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4874647	4874647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RADIL	NM_018059	exon4	c.C1007T	p.T336I	ACCACGGTCCTGT	.	35	20	41	0	.	994	A	4874647	G	A	4874647	3	1	140	1	0	0	0	0	1	0	0	0	12997	1261	44	3	2268	3	RADIL	7	4874647	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	2178874	4874647	154264016	121	17634											
HECW1	23072	ucsc.edu;bcgsc.ca	37	7	43506065	43506065	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HECW1	NM_015052	exon15	c.A2811G	p.S937S	AGGGTCACTTTCT	.	56	4	53	1	.	669	G	43506065	A	G	43506065	2	3	140	1	0	0	0	0	0	0	0	1	7042	146	6	2		2	HECW1	7	43506065	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	38631418	43506065	115632598	122	17635											
NPC1L1	29881	ucsc.edu;bcgsc.ca	37	7	44555743	44555743	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPC1L1	NM_013389	exon18	c.C3654A	p.I1218I	GGTGCTGATGGCA	.	76	6	63	0	.	94	T	44555743	G	T	44555743	2	4	140	1	0	0	0	0	0	0	0	1	10571	1280	45	3		3	NPC1L1	7	44555743	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1049678	44555743	114582920	123	17636											
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50514900	50514900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FIGNL1	NM_001042762	exon4	c.C86T	p.P29L	GCCTTCGGTCCGG	.	70	20	82	0	.	93	A	50514900	G	A	50514900	3	1	140	1	0	0	0	0	1	0	0	0	5892	1116	39	1	1942	1	FIGNL1	7	50514900	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	5959157	50514900	108623763	124	17637											
FZD9	8326	ucsc.edu;bcgsc.ca	37	7	72849142	72849142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FZD9	NM_003508	exon1	c.T805C	p.F269L	ATCATCTTCCTCT	.	42	5	48	0	.	1082	C	72849142	T	C	72849142	3	2	140	1	0	0	0	0	1	0	0	0	6137	1609	56	2	807	2	FZD9	7	72849142	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	22334242	72849142	86289521	125	17638											
TMEM120A	83862	ucsc.edu;bcgsc.ca	37	7	75621559	75621559	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	CCTCTGCTGGGAG	.	35	4	31	0	.	.	A	75621559	C	A	75621559	5	1	140	1	0	0	0	0	0	0	1	0	16030	797	28	3	851	3	TMEM120A	7	75621559	Splice_Site	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2772417	75621559	83517104	126	17639											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83590805	83590805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA3A	NM_006080	exon17	c.G2198T	p.R733L	TGCCGACGTTGTT	.	182	76	234	0	.	156	A	83590805	C	A	83590805	3	1	140	1	0	0	0	0	1	0	0	0	14024	536	19	1	121	1	SEMA3A	7	83590805	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	7969246	83590805	75547858	127	17640											
TRRAP	8295	ucsc.edu;bcgsc.ca	37	7	98562268	98562268	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRRAP	NM_001244580	exon47	c.C6825A	p.L2275L	GATCCTCAAGTCT	.	30	4	41	0	.	923	A	98562268	C	A	98562268	2	1	140	1	0	0	0	0	0	0	0	1	16598	813	29	3		3	TRRAP	7	98562268	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	14971463	98562268	60576395	128	17641											
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99474046	99474046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR2AE1	NM_001005276	exon1	c.T611C	p.I204T	AGGAGAATGCTGC	.	51	15	59	0	.	90	G	99474046	A	G	99474046	3	3	140	1	0	0	0	0	1	0	0	0	10983	101	4	2	364	2	OR2AE1	7	99474046	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	911778	99474046	59664617	129	17642											
MCM7	4176	broad.mit.edu;mdanderson.org	37	7	99697309	99697309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCM7	NM_005916	exon3	c.C179G	p.P60R	AACTCGGGGTCAT	.	14	8	13	0	.	651	C	99697309	G	C	99697309	3	2	140	1	0	0	0	0	1	0	0	0	9392	1232	43	4	2032	4	MCM7	7	99697309	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	223263	99697309	59441354	130	17643											
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100391477	100391477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZAN	.	.	.	.	CAGAGCTGTATGA	.	25	4	39	0	.	142	C	100391477	T	C	100391477	3	2	140	1	0	0	0	0	1	0	0	0	17510	1580	55	2	8053	2	ZAN	7	100391477	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	694168	100391477	58747186	131	17644											
CTTNBP2	83992	ucsc.edu;bcgsc.ca	37	7	117451007	117451007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTTNBP2	NM_033427	exon3	c.G226A	p.G76R	ATCTCCCATACCG	.	45	4	53	0	.	94	T	117451007	C	T	117451007	3	4	140	1	0	0	0	0	1	0	0	0	4045	594	21	3	4849	3	CTTNBP2	7	117451007	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	17059530	117451007	41687656	132	17645											
SND1	27044	ucsc.edu;bcgsc.ca	37	7	127344990	127344990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SND1	NM_014390	exon8	c.C938A	p.A313E	TGAGGGCGGCAGA	.	43	4	68	0	.	92	A	127344990	C	A	127344990	3	1	140	1	0	0	0	0	1	0	0	0	14844	768	27	1	968	1	SND1	7	127344990	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	9893983	127344990	31793673	133	17646											
IMPDH1	3614	ucsc.edu;bcgsc.ca	37	7	128038520	128038520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IMPDH1	NM_000883	exon10	c.A1022G	p.D341G	TATTTGTCATCCT	.	42	4	63	0	.	230	C	128038520	T	C	128038520	3	2	140	1	0	0	0	0	1	0	0	0	7726	1667	58	2	809	2	IMPDH1	7	128038520	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	693530	128038520	31100143	134	17647											
EPHA1	2041	ucsc.edu;bcgsc.ca	37	7	143096773	143096773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPHA1	NM_005232	exon4	c.A806G	p.E269G	CCTTCCTCATAGC	.	43	4	43	1	.	1436	C	143096773	T	C	143096773	3	2	140	1	0	0	0	0	1	0	0	0	5165	1551	54	2	2184	2	EPHA1	7	143096773	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	15058253	143096773	16041890	135	17648											
CNTNAP2	26047	ucsc.edu;bcgsc.ca	37	7	146818167	146818167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTNAP2	NM_014141	exon6	c.A851G	p.Q284R	AGCGCCAGGGGCG	.	35	4	55	0	.	100	G	146818167	A	G	146818167	3	3	140	1	0	0	0	0	1	0	0	0	3647	188	7	2	873	2	CNTNAP2	7	146818167	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	3721394	146818167	12320496	136	17649											
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155094019	155094019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INSIG1	NM_005542	exon4	c.G596A	p.G199D	CTTTGGGCCTTTG	.	209	41	246	0	.	90	A	155094019	G	A	155094019	3	1	140	1	0	0	0	0	1	0	0	0	7765	1203	42	3	606	3	INSIG1	7	155094019	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	8275852	155094019	4044644	137	17650											
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2999990	2999990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD1	NM_033225	exon41	c.C6238A	p.Q2080K	TACCTTGGTAAGC	.	37	5	100	0	.	86	T	2999990	G	T	2999990	3	4	140	1	0	0	0	0	1	0	0	0	3944	1357	47	3	4576	3	CSMD1	8	2999990	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10		2999990	143364032	138	17651											
RHOBTB2	23221	ucsc.edu;bcgsc.ca	37	8	22874843	22874843	+	Missense_Mutation	SNP	G	G	A	rs143264894		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHOBTB2	NM_001160036	exon12	c.G2111A	p.R704Q	GGGCACGGAAGGA	.	33	4	66	0	G|1.000;A|0.000	416	A	22874843	G	A	22874843	3	1	140	1	0	0	0	0	1	0	0	0	13334	1116	39	1	2164	1	RHOBTB2	8	22874843	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	19874853	22874843	123489179	139	17652											
KIF13B	23303	ucsc.edu;bcgsc.ca	37	8	28988090	28988090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF13B	NM_015254	exon24	c.C3035T	p.A1012V	TCCTTTGCAGAAA	.	35	4	90	0	.	22	A	28988090	G	A	28988090	3	1	140	1	0	0	0	0	1	0	0	0	8275	1319	46	3	2513	3	KIF13B	8	28988090	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	6113247	28988090	117375932	140	17653											
DCTN6	10671	ucsc.edu;bcgsc.ca	37	8	30038060	30038060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTN6	NM_006571	exon6	c.A388G	p.N130D	TGTTGCAACCTAA	.	46	4	132	1	.	91	G	30038060	A	G	30038060	3	3	140	1	0	0	0	0	1	0	0	0	4311	130	5	2	410	2	DCTN6	8	30038060	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1049970	30038060	116325962	141	17654											
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36788605	36788605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNU1	NM_001031836	exon25	c.G2873T	p.R958I	CTGGAAGAAACCG	.	32	5	94	0	.	23	T	36788605	G	T	36788605	3	4	140	1	0	0	0	0	1	0	0	0	8093	942	33	3	2971	3	KCNU1	8	36788605	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	6750545	36788605	109575417	142	17655											
GPR124	25960	ucsc.edu;bcgsc.ca	37	8	37687398	37687398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR124	NM_032777	exon6	c.A584G	p.D195G	CCTGTGACTGCCA	.	21	4	58	0	.	157	G	37687398	A	G	37687398	3	3	140	1	0	0	0	0	1	0	0	0	6638	275	10	2	585	2	GPR124	8	37687398	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	898793	37687398	108676624	143	17656											
ADAM32	203102	ucsc.edu;bcgsc.ca	37	8	39022554	39022554	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAM32	NM_145004	exon9	c.C672T	p.F224F	GATGTTCACCCAA	.	30	4	104	0	.	227	T	39022554	C	T	39022554	2	4	140	1	0	0	0	0	0	0	0	1	249	825	29	3		3	ADAM32	8	39022554	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1335156	39022554	107341468	144	17657											
AP3M2	10947	ucsc.edu;bcgsc.ca	37	8	42012433	42012433	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AP3M2	NM_001134296	exon3	c.T228C	p.P76P	CCCCCCTCTGTTT	.	38	4	110	1	.	90	C	42012433	T	C	42012433	2	2	140	1	0	0	0	0	0	0	0	1	748	1538	54	2		2	AP3M2	8	42012433	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	2989879	42012433	104351589	145	17658											
KCNB2	9312	ucsc.edu;bcgsc.ca	37	8	73849698	73849698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNB2	NM_004770	exon3	c.C2108A	p.S703Y	AGAGCTCTCTAAA	.	49	4	40	0	.	158	A	73849698	C	A	73849698	3	1	140	1	0	0	0	0	1	0	0	0	8013	913	32	3	2114	3	KCNB2	8	73849698	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	31837265	73849698	72514324	146	17659											
RIMS2	9699	ucsc.edu;bcgsc.ca	37	8	105001616	105001616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIMS2	NM_001100117	exon17	c.T3011C	p.V1004A	ATCGTGTCATGGA	.	34	4	29	0	.	279	C	105001616	T	C	105001616	3	2	140	1	0	0	0	0	1	0	0	0	13368	1667	58	2	3203	2	RIMS2	8	105001616	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	31151918	105001616	41362406	147	17660											
FAM49B	51571	ucsc.edu;bcgsc.ca	37	8	130874579	130874579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM49B	NM_016623	exon5	c.C197T	p.A66V	TGGATTGCCTTCA	.	53	4	43	0	.	90	A	130874579	G	A	130874579	3	1	140	1	0	0	0	0	1	0	0	0	5576	1333	46	3	809	3	FAM49B	8	130874579	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	25872963	130874579	15489443	148	17661											
CYP11B1	1584	ucsc.edu;bcgsc.ca	37	8	143958298	143958298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CYP11B1	NM_000497	exon4	c.G599A	p.S200N	AAGTTGCTGGCTG	.	44	4	45	0	.	94	T	143958298	C	T	143958298	3	4	140	1	0	0	0	0	1	0	0	0	4145	797	28	3	936	3	CYP11B1	8	143958298	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	13083719	143958298	2405724	149	17662											
RFX3	5991	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	3346710	3346710	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RFX3	NM_134428	exon4	c.C172T	p.Q58X	CATACTGCACCTG	.	44	10	70	0	.	93	A	3346710	G	A	3346710	4	1	140	1	0	0	0	0	0	1	0	0	13264	1328	46	3	2293	3	RFX3	9	3346710	Nonsense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10		3346710	137866721	150	17663											
KIAA1432	57589	ucsc.edu;bcgsc.ca	37	9	5774022	5774022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1432	NM_020829	exon26	c.G4048A	p.E1350K	ATAACAGAAGAGC	.	48	5	111	0	.	90	A	5774022	G	A	5774022	3	1	140	1	0	0	0	0	1	0	0	0	8233	943	33	3	3983	3	KIAA1432	9	5774022	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	2427312	5774022	135439409	151	17664											
IL33	90865	ucsc.edu;bcgsc.ca	37	9	6251188	6251188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL33	NM_001199640	exon4	c.C266T	p.S89F	AGCAGTCTACTGT	.	39	4	54	0	.	90	T	6251188	C	T	6251188	3	4	140	1	0	0	0	0	1	0	0	0	7693	913	32	3	276	3	IL33	9	6251188	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	477166	6251188	134962243	152	17665											
NFIB	4781	ucsc.edu;bcgsc.ca	37	9	14179728	14179728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFIB	NM_001190738	exon3	c.C692A	p.P231Q	TTACCTGGAGGAT	.	31	4	57	1	.	226	T	14179728	G	T	14179728	3	4	140	1	0	0	0	0	1	0	0	0	10371	1348	47	3	676	3	NFIB	9	14179728	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	7928540	14179728	127033703	153	17666											
LINGO2	158038	broad.mit.edu;bcgsc.ca	37	9	27950383	27950383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LINGO2	NM_001258282	exon7	c.T287A	p.V96E	GGTTCCACATTGG	.	92	10	176	1	.	516	T	27950383	A	T	27950383	3	4	140	1	0	0	0	0	1	0	0	0	8815	159	6	4	1537	4	LINGO2	9	27950383	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	13770655	27950383	113263048	154	17667											
DCTN3	11258	ucsc.edu;bcgsc.ca	37	9	34614117	34614117	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTN3	NM_024348	exon6	c.C490T	p.L164L	AGTGTAGCACAGA	.	31	4	34	0	.	90	A	34614117	G	A	34614117	2	1	140	1	0	0	0	0	0	0	0	1	4308	962	34	3		3	DCTN3	9	34614117	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	6663734	34614117	106599314	155	17668											
TJP2	9414	ucsc.edu;bcgsc.ca	37	9	71849423	71849423	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TJP2	NM_001170416	exon12	c.A1833G	p.K611K	CCCTAAAGGTGAA	.	47	4	75	0	.	115	G	71849423	A	G	71849423	2	3	140	1	0	0	0	0	0	0	0	1	15927	69	3	2		2	TJP2	9	71849423	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	37235306	71849423	69364008	156	17669											
FAM189A2	9413	ucsc.edu;bcgsc.ca	37	9	71992542	71992542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM189A2	NM_004816	exon6	c.T376C	p.S126P	CAGATTTCTGCTG	.	36	4	58	1	.	90	C	71992542	T	C	71992542	3	2	140	1	0	0	0	0	1	0	0	0	5516	1783	62	2	394	2	FAM189A2	9	71992542	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	143119	71992542	69220889	157	17670											
ZCCHC6	79670	ucsc.edu;bcgsc.ca	37	9	88932158	88932158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZCCHC6	NM_024617	exon17	c.G3250T	p.A1084S	CTCTTGCTAATTC	.	37	4	37	0	.	92	A	88932158	C	A	88932158	3	1	140	1	0	0	0	0	1	0	0	0	17589	797	28	3	1281	3	ZCCHC6	9	88932158	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	16939616	88932158	52281273	158	17671											
TDRD7	23424	ucsc.edu;bcgsc.ca	37	9	100232863	100232863	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TDRD7	NM_014290	exon9	c.T1653C	p.F551F	TGGTTTTAGTGAA	.	39	4	76	0	.	93	C	100232863	T	C	100232863	2	2	140	1	0	0	0	0	0	0	0	1	15732	1751	61	2		2	TDRD7	9	100232863	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	11300705	100232863	40980568	159	17672											
ANKS6	203286	ucsc.edu;bcgsc.ca	37	9	101552846	101552846	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKS6	NM_173551	exon2	c.G402A	p.G134G	ATCAGCCCCGTGA	.	44	4	106	0	.	92	T	101552846	C	T	101552846	2	4	140	1	0	0	0	0	0	0	0	1	692	610	22	3		3	ANKS6	9	101552846	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1319983	101552846	39660585	160	17673											
COL15A1	1306	ucsc.edu;bcgsc.ca	37	9	101782702	101782702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL15A1	NM_001855	exon12	c.A1679G	p.Q560R	AAGGACAGGCTGG	.	38	5	77	0	.	96	G	101782702	A	G	101782702	3	3	140	1	0	0	0	0	1	0	0	0	3672	188	7	2	1725	2	COL15A1	9	101782702	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	229856	101782702	39430729	161	17674											
C9orf91	203197	ucsc.edu;bcgsc.ca	37	9	117386639	117386639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C9orf91	NM_153045	exon3	c.A116G	p.N39S	TCCACAATGGCCA	.	35	4	81	0	.	91	G	117386639	A	G	117386639	3	3	140	1	0	0	0	0	1	0	0	0	2505	101	4	2	122	2	C9orf91	9	117386639	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	15603937	117386639	23826792	162	17675											
PDCL	5082	ucsc.edu;bcgsc.ca	37	9	125582879	125582879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDCL	NM_005388	exon4	c.C391A	p.Q131K	CATCTTGGTCCTC	.	28	4	33	0	.	90	T	125582879	G	T	125582879	3	4	140	1	0	0	0	0	1	0	0	0	11626	1357	47	3	518	3	PDCL	9	125582879	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	8196240	125582879	15630552	163	17676											
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125674263	125674263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBTB6	NM_006626	exon2	c.A89G	p.N30S	AATAAATTCTGCT	.	65	56	112	0	.	90	C	125674263	T	C	125674263	3	2	140	1	0	0	0	0	1	0	0	0	17549	1493	52	2	1189	2	ZBTB6	9	125674263	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	91384	125674263	15539168	164	17677											
CDK9	1025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130550943	130550943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDK9	NM_001261	exon6	c.G725T	p.S242I	TCATCAGTCAGCT	.	59	44	144	1	.	521	T	130550943	G	T	130550943	3	4	140	1	0	0	0	0	1	0	0	0	3151	1029	36	3	747	3	CDK9	9	130550943	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	4876680	130550943	10662488	165	17678											
NUP188	23511	ucsc.edu;bcgsc.ca	37	9	131765129	131765129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP188	NM_015354	exon37	c.C4171T	p.P1391S	GATGCCCCCTCTT	.	35	4	45	0	.	207	T	131765129	C	T	131765129	3	4	140	1	0	0	0	0	1	0	0	0	10758	623	22	3	4317	3	NUP188	9	131765129	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1214186	131765129	9448302	166	17679											
NUP214	8021	ucsc.edu;bcgsc.ca	37	9	134004676	134004676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP214	NM_005085	exon4	c.A404T	p.Q135L	AACAGCAAAAACG	.	39	4	86	0	.	1131	T	134004676	A	T	134004676	3	4	140	1	0	0	0	0	1	0	0	0	10762	130	5	4	418	4	NUP214	9	134004676	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	2239547	134004676	7208755	167	17680											
SETX	23064	ucsc.edu;bcgsc.ca	37	9	135210076	135210076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SETX	NM_015046	exon7	c.A757T	p.M253L	AATCCATGGCTTG	.	39	4	72	0	.	93	A	135210076	T	A	135210076	3	1	140	1	0	0	0	0	1	0	0	0	14141	1464	51	4	7356	4	SETX	9	135210076	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	1205400	135210076	6003355	168	17681											
KCNT1	57582	ucsc.edu;bcgsc.ca	37	9	138661869	138661869	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNT1	NM_020822	exon16	c.C1587A	p.L529L	CACCCTCATCACC	.	35	4	72	0	.	137	A	138661869	C	A	138661869	2	1	140	1	0	0	0	0	0	0	0	1	8091	813	29	3		3	KCNT1	9	138661869	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	3451793	138661869	2551562	169	17682											
CAMSAP1	157922	ucsc.edu;bcgsc.ca	37	9	138713378	138713378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAMSAP1	NM_015447	exon11	c.G3129T	p.Q1043H	TTGCTGCTGAGAG	.	41	4	63	0	.	92	A	138713378	C	A	138713378	3	1	140	1	0	0	0	0	1	0	0	0	2611	796	28	3	1707	3	CAMSAP1	9	138713378	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	51509	138713378	2500053	170	17683											
SDCCAG3	10807	ucsc.edu;bcgsc.ca	37	9	139298615	139298615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SDCCAG3	NM_001039707	exon9	c.A1100G	p.E367G	AGGGCTTCATTCT	.	44	4	66	0	.	90	C	139298615	T	C	139298615	3	2	140	1	0	0	0	0	1	0	0	0	13958	1783	62	2	215	2	SDCCAG3	9	139298615	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	585237	139298615	1914816	171	17684											
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27389068	27389068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD26	NM_014915	exon1	c.A188G	p.Q63R	ATCTGCTGCACTT	.	50	7	42	0	.	138	C	27389068	T	C	27389068	3	2	140	1	0	0	0	0	1	0	0	0	654	1580	55	2	5080	2	ANKRD26	10	27389068	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10		27389068	108145679	172	17685											
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71175879	71175879	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TACR2	NM_001057	exon1	c.C201T	p.V67V	GTTGGTGACTGTG	.	82	27	50	0	.	522	A	71175879	G	A	71175879	2	1	140	1	0	0	0	0	0	0	0	1	15503	1277	45	3		3	TACR2	10	71175879	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	43786811	71175879	64358868	173	17686											
ADAMTS14	140766	ucsc.edu;bcgsc.ca	37	10	72511295	72511295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS14	NM_139155	exon17	c.A2498G	p.E833G	TCCATGAGGACCT	.	38	4	39	0	.	232	G	72511295	A	G	72511295	3	3	140	1	0	0	0	0	1	0	0	0	259	304	11	2	2564	2	ADAMTS14	10	72511295	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1335416	72511295	63023452	174	17687											
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101802222	101802222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPN1	NM_001308	exon9	c.G1339A	p.E447K	CCATTTCTTTCTT	.	83	35	80	0	.	227	T	101802222	C	T	101802222	3	4	140	1	0	0	0	0	1	0	0	0	3809	922	32	3	41	3	CPN1	10	101802222	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	29290927	101802222	33732525	175	17688											
BLOC1S2	282991	ucsc.edu;bcgsc.ca	37	10	102045885	102045885	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BLOC1S2	NM_173809	exon2	c.A141G	p.K47K	GGCCATTTTGGAG	.	36	4	30	0	.	91	C	102045885	T	C	102045885	2	2	140	1	0	0	0	0	0	0	0	1	1449	1838	64	2		2	BLOC1S2	10	102045885	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	243663	102045885	33488862	176	17689											
TUBGCP2	10844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135099037	135099037	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TUBGCP2	NM_001256617	exon13	c.G1902T	p.T634T	CAGCTCCGTGGGG	.	39	16	49	0	.	90	A	135099037	C	A	135099037	2	1	140	1	0	0	0	0	0	0	0	1	16763	639	23	1		1	TUBGCP2	10	135099037	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	33053152	135099037	435710	177	17690											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1026952	1026952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC6	NM_005961	exon19	c.G2383A	p.G795S	CAACACCGGTGGC	.	84	30	60	0	.	23	T	1026952	C	T	1026952	3	4	140	1	0	0	0	0	1	0	0	0	9980	652	23	1	4996	1	MUC6	11	1026952	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		1026952	133979564	178	17691											
ABCC8	6833	ucsc.edu;bcgsc.ca	37	11	17464837	17464837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCC8	NM_000352	exon9	c.T1355C	p.L452P	TAGTAGAGGAGAA	.	40	4	28	0	.	91	G	17464837	A	G	17464837	3	3	140	1	0	0	0	0	1	0	0	0	58	304	11	2	3514	2	ABCC8	11	17464837	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	16437885	17464837	117541679	179	17692											
NAV2	89797	ucsc.edu;bcgsc.ca	37	11	20127077	20127077	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAV2	NM_001244963	exon37	c.A6822G	p.R2274R	CTCCAGATGGGTG	.	67	6	61	0	.	96	G	20127077	A	G	20127077	2	3	140	1	0	0	0	0	0	0	0	1	10184	347	12	2		2	NAV2	11	20127077	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	2662240	20127077	114879439	180	17693											
TRIM44	54765	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	35684743	35684743	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIM44	NM_017583	exon1	c.G84T	p.G28G	TCCGGGGGCCGAG	.	25	9	17	0	.	227	T	35684743	G	T	35684743	2	4	140	1	0	0	0	0	0	0	0	1	16516	1219	43	3		3	TRIM44	11	35684743	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	15557666	35684743	99321773	181	17694											
CHRM4	1132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46406927	46406927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_000741	exon1	c.G1181A	p.R394Q	CGCTCCCGGGCCG	.	89	23	73	0	.	.	T	46406927	C	T	46406927	3	4	140	1	0	0	0	0	1	0	0	0	3379	652	23	1	262	1	CHRM4	11	46406927	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	10722184	46406927	88599589	182	17695											
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46430118	46430118	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMBRA1	NM_001267782	exon19	c.A3357G	p.T1119T	AGTCTGTGTTTCG	.	55	5	50	0	.	136	C	46430118	T	C	46430118	2	2	140	1	0	0	0	0	0	0	0	1	565	1683	59	2		2	AMBRA1	11	46430118	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	23191	46430118	88576398	183	17696											
MADD	8567	ucsc.edu;bcgsc.ca	37	11	47308084	47308084	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MADD	NM_130470	exon15	c.A2652G	p.K884K	TCTGAAAGGTAAC	.	34	4	40	0	.	682	G	47308084	A	G	47308084	2	3	140	1	0	0	0	0	0	0	0	1	9152	86	3	2		2	MADD	11	47308084	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	877966	47308084	87698432	184	17697											
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080520	57080520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1642G	p.P548A	TGCTTGGATCATC	.	137	25	48	1	.	91	C	57080520	G	C	57080520	3	2	140	1	0	0	0	0	1	0	0	0	16317	1174	41	4	3575	4	TNKS1BP1	11	57080520	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	9772436	57080520	77925996	185	17698			1	16		4	4	156	G		7.297717e-10
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080609	57080609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1553T	p.S518F	CTGCTGGAAACGG	.	85	21	28	0	.	91	A	57080609	G	A	57080609	3	1	140	1	0	0	0	0	1	0	0	0	16317	1174	41	3	3664	3	TNKS1BP1	11	57080609	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	89	57080609	77925907	186	17699			1	16		4	4	156	G		7.297717e-10
TNKS1BP1	85456	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	57080662	57080662	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1500A	p.I500I	TTCAGTGATGGGG	.	70	18	18	0	.	91	T	57080662	G	T	57080662	2	4	140	1	0	0	0	0	0	0	0	1	16317	1280	45	3		3	TNKS1BP1	11	57080662	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	53	57080662	77925854	187	17700			1	16		4	4	156	G		7.297717e-10
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080675	57080675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1487T	p.P496L	GAGGGAGGCGGGG	.	65	15	17	0	.	91	A	57080675	G	A	57080675	3	1	140	1	0	0	0	0	1	0	0	0	16317	1000	35	3	3730	3	TNKS1BP1	11	57080675	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	13	57080675	77925841	188	17701			1	16		4	4	156	G		7.297717e-10
AHNAK	79026	ucsc.edu;bcgsc.ca	37	11	62288148	62288148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AHNAK	NM_001620	exon5	c.T13741C	p.F4581L	TTTTAAATTTGGG	.	36	4	82	1	.	109	G	62288148	A	G	62288148	3	3	140	1	0	0	0	0	1	0	0	0	414	101	4	2	4051	2	AHNAK	11	62288148	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	5207473	62288148	72718368	189	17702											
METTL12	751071	ucsc.edu;bcgsc.ca	37	11	62434009	62434009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	METTL12	NM_001043229	exon3	c.A209G	p.E70G	TGCAGGAGGCACA	.	31	4	44	1	.	22	G	62434009	A	G	62434009	3	3	140	1	0	0	0	0	1	0	0	0	9496	304	11	2	215	2	METTL12	11	62434009	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	145861	62434009	72572507	190	17703											
SLC22A6	9356	ucsc.edu;bcgsc.ca	37	11	62751010	62751010	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC22A6	NM_153276	exon3	c.G627T	p.L209L	CTCACTCAGTGTC	.	30	4	40	0	.	90	A	62751010	C	A	62751010	2	1	140	1	0	0	0	0	0	0	0	1	14458	840	29	3		3	SLC22A6	11	62751010	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	317001	62751010	72255506	191	17704											
CCDC88B	283234	ucsc.edu;bcgsc.ca	37	11	64111852	64111852	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC88B	NM_032251	exon14	c.A1839G	p.K613K	GACCAAAATTCAG	.	40	4	96	0	.	94	G	64111852	A	G	64111852	2	3	140	1	0	0	0	0	0	0	0	1	2864	11	1	2		2	CCDC88B	11	64111852	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1360842	64111852	70894664	192	17705											
CNIH2	254263	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	66050758	66050758	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNIH2	NM_182553	exon5	c.T351G	p.Y117X	CATGTATGATGCG	.	33	19	62	0	.	90	G	66050758	T	G	66050758	4	3	140	1	0	0	0	0	0	1	0	0	3603	1471	51	5	369	5	CNIH2	11	66050758	Nonsense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	1938906	66050758	68955758	193	17706											
KDM2A	22992	ucsc.edu;bcgsc.ca	37	11	66999328	66999328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM2A	NM_012308	exon12	c.A1376G	p.E459G	AGCTTGAAGGCCT	.	17	4	42	0	.	661	G	66999328	A	G	66999328	3	3	140	1	0	0	0	0	1	0	0	0	8124	246	9	2	1418	2	KDM2A	11	66999328	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	948570	66999328	68007188	194	17707											
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67262555	67262555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PITPNM1	NM_004910	exon17	c.T2624C	p.L875P	TGGCGCAGGATGA	.	23	4	38	0	.	227	G	67262555	A	G	67262555	3	3	140	1	0	0	0	0	1	0	0	0	11950	188	7	2	1142	2	PITPNM1	11	67262555	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	263227	67262555	67743961	195	17708											
ARHGEF17	9828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73022229	73022229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF17	NM_014786	exon1	c.C2546T	p.P849L	GGGAGCCCATCCG	.	45	15	91	0	.	227	T	73022229	C	T	73022229	3	4	140	1	0	0	0	0	1	0	0	0	900	623	22	3	2548	3	ARHGEF17	11	73022229	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	5759674	73022229	61984287	196	17709											
RELT	84957	ucsc.edu;bcgsc.ca	37	11	73103403	73103403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RELT	NM_152222	exon6	c.T515C	p.F172S	CTGTCTTCTGCCT	.	45	4	66	0	.	228	C	73103403	T	C	73103403	3	2	140	1	0	0	0	0	1	0	0	0	13221	1783	62	2	533	2	RELT	11	73103403	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	81174	73103403	61903113	197	17710											
PIWIL4	143689	ucsc.edu;bcgsc.ca	37	11	94331044	94331044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIWIL4	NM_152431	exon11	c.T1343C	p.I448T	GCCGGATTGTGCC	.	45	4	60	0	.	91	C	94331044	T	C	94331044	3	2	140	1	0	0	0	0	1	0	0	0	11960	1493	52	2	1385	2	PIWIL4	11	94331044	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	21227641	94331044	40675472	198	17711											
PIWIL4	143689	ucsc.edu;bcgsc.ca	37	11	94351131	94351131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIWIL4	NM_152431	exon17	c.A2026G	p.K676E	CTCAACAAATGGT	.	31	4	78	0	.	91	G	94351131	A	G	94351131	3	3	140	1	0	0	0	0	1	0	0	0	11960	131	5	2	2092	2	PIWIL4	11	94351131	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	20087	94351131	40655385	199	17712											
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104820474	104820474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CASP4	NM_001225	exon5	c.A577G	p.T193A	GTCTGGTAGCAAA	.	50	10	101	0	.	660	C	104820474	T	C	104820474	3	2	140	1	0	0	0	0	1	0	0	0	2673	1638	57	2	572	2	CASP4	11	104820474	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	10469343	104820474	30186042	200	17713											
KBTBD3	143879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105925003	105925003	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KBTBD3	NM_152433	exon3	c.C413G	p.S138C	GCTTTGGATAGGA	.	72	26	138	0	.	91	C	105925003	G	C	105925003	3	2	140	1	0	0	0	0	1	0	0	0	7994	1174	41	4	1429	4	KBTBD3	11	105925003	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1104529	105925003	29081513	201	17714											
ATM	472	ucsc.edu;bcgsc.ca	37	11	108121612	108121612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATM	NM_000051	exon10	c.A1420G	p.S474G	CTAGAAAGCTCAC	.	44	5	70	0	.	3419	G	108121612	A	G	108121612	3	3	140	1	0	0	0	0	1	0	0	0	1109	72	3	2	1454	2	ATM	11	108121612	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	2196609	108121612	26884904	202	17715											
C2CD2L	9854	ucsc.edu;bcgsc.ca	37	11	118983537	118983537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C2CD2L	NM_014807	exon10	c.C1340A	p.T447N	TTGTCACCACAGT	.	39	5	41	0	.	68	A	118983537	C	A	118983537	3	1	140	1	0	0	0	0	1	0	0	0	2153	507	18	3	1378	3	C2CD2L	11	118983537	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	10861925	118983537	16022979	203	17716											
ARHGEF12	23365	ucsc.edu;bcgsc.ca	37	11	120329986	120329986	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF12	NM_015313	exon26	c.A2484G	p.L828L	AGAGCTACGGAAA	.	32	4	52	0	.	661	G	120329986	A	G	120329986	2	3	140	1	0	0	0	0	0	0	0	1	897	378	14	2		2	ARHGEF12	11	120329986	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1346449	120329986	14676530	204	17717											
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310110	124310110	+	Missense_Mutation	SNP	C	C	T	rs147220624	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR8B8	NM_012378	exon1	c.G872A	p.S291N	CTCAGGCTATAAA	.	35	16	66	0	C|0.999;A|0.001	69	T	124310110	C	T	124310110	3	4	140	1	0	0	0	0	1	0	0	0	11230	797	28	3	66	3	OR8B8	11	124310110	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	3980124	124310110	10696406	205	17718											
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310343	124310343	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR8B8	NM_012378	exon1	c.C639A	p.T213T	GAAGATGGTGACT	.	40	18	86	0	.	69	T	124310343	G	T	124310343	2	4	140	1	0	0	0	0	0	0	0	1	11230	1335	47	3		3	OR8B8	11	124310343	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	233	124310343	10696173	206	17719											
TIRAP	114609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	126162958	126162958	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TIRAP	NM_148910	exon5	c.A654G	p.L218L	TAAGCTACTACAG	.	20	5	25	0	.	523	G	126162958	A	G	126162958	2	3	140	1	0	0	0	0	0	0	0	1	15924	378	14	2		2	TIRAP	11	126162958	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1852615	126162958	8843558	207	17720											
PRDM10	56980	ucsc.edu;bcgsc.ca	37	11	129793150	129793150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRDM10	NM_020228	exon14	c.A2039G	p.Q680R	TTAAATTGCTTCC	.	35	4	39	0	.	91	C	129793150	T	C	129793150	3	2	140	1	0	0	0	0	1	0	0	0	12451	1812	63	2	1479	2	PRDM10	11	129793150	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	3630192	129793150	5213366	208	17721											
ADAMTS8	11095	ucsc.edu;bcgsc.ca	37	11	130278752	130278752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS8	NM_007037	exon7	c.C1834T	p.P612S	ACTTGGGGACCCA	.	28	4	50	0	.	226	A	130278752	G	A	130278752	3	1	140	1	0	0	0	0	1	0	0	0	272	1232	43	3	847	3	ADAMTS8	11	130278752	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	485602	130278752	4727764	209	17722											
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2944113	2944113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NRIP2	NM_031474	exon1	c.C37T	p.P13S	AGGAGGGTCTCCA	.	64	14	88	0	.	187	A	2944113	G	A	2944113	3	1	140	1	0	0	0	0	1	0	0	0	10653	1261	44	3	832	3	NRIP2	12	2944113	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10		2944113	130907782	210	17723											
EFCAB4B	84766	ucsc.edu;bcgsc.ca	37	12	3782653	3782653	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFCAB4B	NM_001144958	exon7	c.A630G	p.E210E	ATGGGCTTCTTGG	.	40	4	55	0	.	92	C	3782653	T	C	3782653	2	2	140	1	0	0	0	0	0	0	0	1	4937	1606	56	2		2	EFCAB4B	12	3782653	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	838540	3782653	130069242	211	17724											
CD4	920	ucsc.edu;bcgsc.ca	37	12	6923451	6923451	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD4	NM_000616	exon4	c.T358C	p.L120L	GTGCAATTGCTAG	.	43	4	70	0	.	90	C	6923451	T	C	6923451	2	2	140	1	0	0	0	0	0	0	0	1	3014	1490	52	2		2	CD4	12	6923451	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	3140798	6923451	126928444	212	17725											
USP5	8078	ucsc.edu;bcgsc.ca	37	12	6970233	6970233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP5	NM_003481	exon12	c.G1461A	p.M487I	CATCATGCAGCTG	.	47	4	49	0	.	659	A	6970233	G	A	6970233	3	1	140	1	0	0	0	0	1	0	0	0	17078	1319	46	3	1507	3	USP5	12	6970233	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	46782	6970233	126881662	213	17726											
PTPN6	5777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7064833	7064833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN6	NM_080548	exon7	c.A764G	p.K255R	TGCAGAAGCAGGA	.	55	7	59	0	.	703	G	7064833	A	G	7064833	3	3	140	1	0	0	0	0	1	0	0	0	12792	72	3	2	802	2	PTPN6	12	7064833	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	94600	7064833	126787062	214	17727											
CD163L1	283316	ucsc.edu;bcgsc.ca	37	12	7527298	7527298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD163L1	NM_174941	exon13	c.A3149G	p.E1050G	TAGATCTCTACTC	.	30	4	43	0	.	100	C	7527298	T	C	7527298	3	2	140	1	0	0	0	0	1	0	0	0	2968	1551	54	2	1240	2	CD163L1	12	7527298	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	462465	7527298	126324597	215	17728											
ACVRL1	94	ucsc.edu;bcgsc.ca	37	12	52309854	52309854	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACVRL1	NM_000020	exon8	c.C1083T	p.Y361Y	CGATTACCTGGAC	.	29	4	25	0	.	521	T	52309854	C	T	52309854	2	4	140	1	0	0	0	0	0	0	0	1	225	518	18	3		3	ACVRL1	12	52309854	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	44782556	52309854	81542041	216	17729											
IKZF4	64375	ucsc.edu;bcgsc.ca	37	12	56428968	56428968	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IKZF4	NM_022465	exon8	c.C1611T	p.I537I	CCGTATCCTCTTC	.	41	4	37	0	.	205	T	56428968	C	T	56428968	2	4	140	1	0	0	0	0	0	0	0	1	7617	845	30	3		3	IKZF4	12	56428968	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	4119114	56428968	77422927	217	17730											
CTDSP2	10106	ucsc.edu;bcgsc.ca	37	12	58221372	58221372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTDSP2	NM_005730	exon3	c.C215T	p.S72L	AGATCCGACTGAG	.	42	4	51	0	.	514	A	58221372	G	A	58221372	3	1	140	1	0	0	0	0	1	0	0	0	4004	1072	37	1	624	1	CTDSP2	12	58221372	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1792404	58221372	75630523	218	17731											
USP15	9958	ucsc.edu;bcgsc.ca	37	12	62783237	62783237	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP15	NM_001252078	exon12	c.A1500G	p.G500G	AATTGGAAACATA	.	58	6	55	0	.	1084	G	62783237	A	G	62783237	2	3	140	1	0	0	0	0	0	0	0	1	17043	233	9	2		2	USP15	12	62783237	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	4561865	62783237	71068658	219	17732											
TCTN2	79867	ucsc.edu;bcgsc.ca	37	12	124189231	124189231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCTN2	NM_024809	exon15	c.A1765G	p.T589A	GTAGAGACAAGGT	.	35	4	66	0	.	91	G	124189231	A	G	124189231	3	3	140	1	0	0	0	0	1	0	0	0	15720	275	10	2	1823	2	TCTN2	12	124189231	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	61405994	124189231	9662664	220	17733											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124257438	124257438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon4	c.C271T	p.P91S	CCTCTTCCCGAGG	.	59	32	53	0	.	95	T	124257438	C	T	124257438	3	4	140	1	0	0	0	0	1	0	0	0	4598	855	30	3	285	3	DNAH10	12	124257438	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	68207	124257438	9594457	221	17734											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124257449	124257449	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon4	c.C282T	p.F94F	GGAGTTCCTGGAC	.	58	33	58	0	.	95	T	124257449	C	T	124257449	2	4	140	1	0	0	0	0	0	0	0	1	4598	854	30	3		3	DNAH10	12	124257449	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	11	124257449	9594446	222	17735											
TMEM132B	114795	ucsc.edu;bcgsc.ca	37	12	126135429	126135429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM132B	NM_052907	exon7	c.A1829G	p.E610G	TGGAGGAGCCGAA	.	34	4	54	1	.	185	G	126135429	A	G	126135429	3	3	140	1	0	0	0	0	1	0	0	0	16043	304	11	2	1855	2	TMEM132B	12	126135429	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1877980	126135429	7716466	223	17736											
BRCA2	675	ucsc.edu;bcgsc.ca	37	13	32931936	32931936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRCA2	NM_000059	exon16	c.T7675C	p.S2559P	GCAGAGTCTTTTC	.	37	5	65	1	.	3153	C	32931936	T	C	32931936	3	2	140	1	0	0	0	0	1	0	0	0	1499	1667	58	2	7733	2	BRCA2	13	32931936	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10		32931936	82237942	224	17737											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36229035	36229036	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NBEA	NM_015678	exon53	c.8016_8017insC	p.V2672fs	CCTCGTTGACCAG	.	45	30	73	0	.	144	C	36229036	-	C	36229035	7	5	140	1	0	1	1	0	0	0	0	0	10187	1799	63	0	8226	0	NBEA	13	36229035	Frame_Shift_Ins	INS	-	TCGA-G3-A25S-01A-11D-A16V-10	3297099	36229035	78940843	225	17738											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39265055	39265055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FREM2	NM_207361	exon1	c.G3574T	p.E1192X	CAGCCAGAGATGT	.	55	44	136	0	.	100	T	39265055	G	T	39265055	4	4	140	1	0	0	0	0	0	1	0	0	6045	943	33	3	3576	3	FREM2	13	39265055	Nonsense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3036020	39265055	75904823	226	17739											
LCP1	3936	ucsc.edu;bcgsc.ca	37	13	46725197	46725197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LCP1	NM_002298	exon8	c.G756T	p.L252F	TTCTCTCAAAAGA	.	31	4	39	0	.	685	A	46725197	C	A	46725197	3	1	140	1	0	0	0	0	1	0	0	0	8691	825	29	3	1163	3	LCP1	13	46725197	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	7460142	46725197	68444681	227	17740											
RCBTB2	1102	ucsc.edu;bcgsc.ca	37	13	49073784	49073784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RCBTB2	NM_001268	exon13	c.A1357G	p.I453V	GGCTGATGCTGTC	.	38	4	82	0	.	418	C	49073784	T	C	49073784	3	2	140	1	0	0	0	0	1	0	0	0	13172	1464	51	2	310	2	RCBTB2	13	49073784	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	2348587	49073784	66096094	228	17741											
MLNR	2862	ucsc.edu;bcgsc.ca	37	13	49796480	49796480	+	Silent	SNP	C	C	A	rs201685217	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLNR	NM_001507	exon2	c.C1206A	p.T402T	CTACACCGAGACA	.	30	4	56	0	.	90	A	49796480	C	A	49796480	2	1	140	1	0	0	0	0	0	0	0	1	9632	639	23	1		1	MLNR	13	49796480	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	722696	49796480	65373398	229	17742											
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111082761	111082761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL4A2	NM_001846	exon9	c.A563G	p.E188G	CTGGAGAGCCTGG	.	76	27	114	0	.	95	G	111082761	A	G	111082761	3	3	140	1	0	0	0	0	1	0	0	0	3690	304	11	2	593	2	COL4A2	13	111082761	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	61286281	111082761	4087117	230	17743											
ANKRD10	55608	ucsc.edu;bcgsc.ca	37	13	111536109	111536109	+	Silent	SNP	C	C	T	rs201341958		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD10	NM_017664	exon5	c.G723A	p.T241T	GCCATTCGTGAGT	.	20	4	36	0	C|0.999;T|0.001	226	T	111536109	C	T	111536109	2	4	140	1	0	0	0	0	0	0	0	1	638	871	31	1		1	ANKRD10	13	111536109	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	453348	111536109	3633769	231	17744											
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24844908	24844908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFATC4	NM_001198967	exon8	c.T2105A	p.L702Q	ACCGACTGCAGAG	.	53	17	96	0	.	92	A	24844908	T	A	24844908	3	1	140	1	0	0	0	0	1	0	0	0	10365	1580	55	4	2135	4	NFATC4	14	24844908	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10		24844908	82504632	232	17745											
FAM179B	23116	ucsc.edu;bcgsc.ca	37	14	45432959	45432959	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM179B	NM_015091	exon1	c.G1335A	p.A445A	GCTGGCGGACAAC	.	26	4	51	1	.	93	A	45432959	G	A	45432959	2	1	140	1	0	0	0	0	0	0	0	1	5506	1103	39	1		1	FAM179B	14	45432959	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	20588051	45432959	61916581	233	17746											
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64678684	64678684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNE2	NM_182914	exon104	c.C18729A	p.F6243L	GCATTTCACCAAC	.	18	4	55	0	.	164	A	64678684	C	A	64678684	3	1	140	1	0	0	0	0	1	0	0	0	15443	825	29	3	19139	3	SYNE2	14	64678684	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	19245725	64678684	42670856	234	17747											
FCF1	51077	ucsc.edu;bcgsc.ca	37	14	75200777	75200777	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FCF1	NM_015962	exon7	c.454-2A>G	.	TCTTACAGCATAA	.	50	4	71	0	.	91	G	75200777	A	G	75200777	5	3	140	1	0	0	0	0	0	0	1	0	5777	202	7	2	478	2	FCF1	14	75200777	Splice_Site	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	10522093	75200777	32148763	235	17748											
KCNK10	54207	ucsc.edu;bcgsc.ca	37	14	88654418	88654418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNK10	NM_138318	exon6	c.A904G	p.K302E	GGGGCTTATACCA	.	40	4	58	0	.	95	C	88654418	T	C	88654418	3	2	140	1	0	0	0	0	1	0	0	0	8059	1763	61	2	735	2	KCNK10	14	88654418	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	13453641	88654418	18695122	236	17749											
DYNC1H1	1778	ucsc.edu;bcgsc.ca	37	14	102469021	102469021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYNC1H1	NM_001376	exon22	c.G4690A	p.E1564K	CCAGTGGAAACCC	.	43	4	111	0	.	98	A	102469021	G	A	102469021	3	1	140	1	0	0	0	0	1	0	0	0	4841	1175	41	3	4776	3	DYNC1H1	14	102469021	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	13814603	102469021	4880519	237	17750											
PPP1R13B	23368	ucsc.edu;bcgsc.ca	37	14	104204199	104204199	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP1R13B	NM_015316	exon16	c.2865-2A>G	.	GCGTCCTGGAATA	.	16	4	36	0	.	227	C	104204199	T	C	104204199	5	2	140	1	0	0	0	0	0	0	1	0	12357	1594	55	2	421	2	PPP1R13B	14	104204199	Splice_Site	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	1735178	104204199	3145341	238	17751											
ASPG	374569	ucsc.edu;bcgsc.ca	37	14	104570684	104570684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001080464	exon8	c.A797G	p.E266G	TCATGGAGACCTT	.	29	4	53	0	.	.	G	104570684	A	G	104570684	3	3	140	1	0	0	0	0	1	0	0	0	1052	304	11	2	827	2	ASPG	14	104570684	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	366485	104570684	2778856	239	17752											
INF2	64423	ucsc.edu;bcgsc.ca	37	14	105175662	105175662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INF2	NM_022489	exon11	c.C1994T	p.T665I	ATACCACCAAGTT	.	26	4	37	0	.	492	T	105175662	C	T	105175662	3	4	140	1	0	0	0	0	1	0	0	0	7734	507	18	3	2036	3	INF2	14	105175662	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	604978	105175662	2173878	240	17753											
INF2	64423	ucsc.edu;bcgsc.ca	37	14	105178003	105178003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INF2	NM_022489	exon16	c.C2456T	p.P819L	AGCTGCCCCGGGA	.	41	4	80	0	.	492	T	105178003	C	T	105178003	3	4	140	1	0	0	0	0	1	0	0	0	7734	623	22	3	2518	3	INF2	14	105178003	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2341	105178003	2171537	241	17754											
BRF1	2972	ucsc.edu;bcgsc.ca	37	14	105739127	105739127	+	Missense_Mutation	SNP	G	G	T	rs199564741	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRF1	NM_001519	exon3	c.C370A	p.R124S	GGCCGCGGGTCAG	.	23	4	44	0	G|0.999;A|0.000	155	T	105739127	G	T	105739127	3	4	140	1	0	0	0	0	1	0	0	0	1510	1116	39	1	1727	1	BRF1	14	105739127	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	561124	105739127	1610413	242	17755											
ZFP106	64397	ucsc.edu;bcgsc.ca	37	15	42720252	42720252	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFP106	NM_022473	exon12	c.A4893T	p.G1631G	TGCCAGTCCCGCA	.	43	4	48	0	.	515	A	42720252	T	A	42720252	2	1	140	1	0	0	0	0	0	0	0	1	17634	1654	58	4		4	ZFP106	15	42720252	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10		42720252	59811140	243	17756											
MAP1A	4130	ucsc.edu;bcgsc.ca	37	15	43821659	43821659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP1A	NM_002373	exon4	c.A7988G	p.H2663R	ATGGACACAGCCC	.	29	4	41	0	.	141	G	43821659	A	G	43821659	3	3	140	1	0	0	0	0	1	0	0	0	9227	159	6	2	7990	2	MAP1A	15	43821659	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1101407	43821659	58709733	244	17757											
FBN1	2200	ucsc.edu;bcgsc.ca	37	15	48766571	48766571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN1	NM_000138	exon34	c.T4091A	p.L1364Q	TCGTCCAGATCTT	.	40	4	40	0	.	92	T	48766571	A	T	48766571	3	4	140	1	0	0	0	0	1	0	0	0	5702	188	7	4	4656	4	FBN1	15	48766571	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	4944912	48766571	53764821	245	17758											
MYO1E	4643	ucsc.edu;bcgsc.ca	37	15	59470655	59470655	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO1E	NM_004998	exon19	c.C1986A	p.V662V	CATGTTGACCGAC	.	46	6	57	0	.	514	T	59470655	G	T	59470655	2	4	140	1	0	0	0	0	0	0	0	1	10072	1277	45	3		3	MYO1E	15	59470655	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	10704084	59470655	43060737	246	17759											
ARNT2	9915	ucsc.edu;bcgsc.ca	37	15	80800523	80800523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARNT2	NM_014862	exon6	c.A649G	p.T217A	ACTGGGACGGTCA	.	57	5	79	0	.	175	G	80800523	A	G	80800523	3	3	140	1	0	0	0	0	1	0	0	0	966	275	10	2	671	2	ARNT2	15	80800523	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	21329868	80800523	21730869	247	17760											
ADAMTSL3	57188	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84651559	84651559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTSL3	NM_207517	exon21	c.T3179C	p.L1060S	CTCTGTTAGGCCA	.	43	20	66	1	.	1153	C	84651559	T	C	84651559	3	2	140	1	0	0	0	0	1	0	0	0	276	1764	61	2	3257	2	ADAMTSL3	15	84651559	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	3851036	84651559	17879833	248	17761											
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86273744	86273744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKAP13	NM_006738	exon30	c.A7100G	p.E2367G	CTGCAGAACAACT	.	39	4	35	0	.	258	G	86273744	A	G	86273744	3	3	140	1	0	0	0	0	1	0	0	0	449	260	9	2	7272	2	AKAP13	15	86273744	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1622185	86273744	16257648	249	17762											
ACAN	176	ucsc.edu;bcgsc.ca	37	15	89386656	89386656	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACAN	NM_001135	exon6	c.G828A	p.L276L	GCGGCTGGGTGCC	.	44	4	51	0	.	25	A	89386656	G	A	89386656	2	1	140	1	0	0	0	0	0	0	0	1	117	1335	47	3		3	ACAN	15	89386656	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3112912	89386656	13144736	250	17763											
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	90023512	90023512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon4	c.C650A	p.S217X	AGGTCCGACTGGT	.	44	19	44	0	.	226	T	90023512	G	T	90023512	4	4	140	1	0	0	0	0	0	1	0	0	13326	1059	37	1	817	1	RHCG	15	90023512	Nonsense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	636856	90023512	12507880	251	17764											
RHCG	51458	ucsc.edu;bcgsc.ca	37	15	90039658	90039658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon1	c.T118C	p.W40R	ACCACCAGTGGGC	.	31	4	32	0	.	226	G	90039658	A	G	90039658	3	3	140	1	0	0	0	0	1	0	0	0	13326	188	7	2	1361	2	RHCG	15	90039658	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	16146	90039658	12491734	252	17765											
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91020941	91020941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IQGAP1	NM_003870	exon26	c.C3149T	p.T1050M	ATCCTACGGTTAT	.	67	15	63	0	.	950	T	91020941	C	T	91020941	3	4	140	1	0	0	0	0	1	0	0	0	7814	536	19	1	3251	1	IQGAP1	15	91020941	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	981283	91020941	11510451	253	17766											
CRTC3	64784	ucsc.edu;bcgsc.ca	37	15	91185335	91185335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRTC3	NM_022769	exon15	c.C1823A	p.P608H	TGGACCCCTCTGT	.	31	4	61	2	.	393	A	91185335	C	A	91185335	3	1	140	1	0	0	0	0	1	0	0	0	3901	623	22	3	1881	3	CRTC3	15	91185335	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	164394	91185335	11346057	254	17767											
TBL3	10607	ucsc.edu;bcgsc.ca	37	16	2027783	2027783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBL3	NM_006453	exon18	c.A1940G	p.Q647R	CCAGGCAAGAGGA	.	50	4	66	0	.	90	G	2027783	A	G	2027783	3	3	140	1	0	0	0	0	1	0	0	0	15640	130	5	2	2010	2	TBL3	16	2027783	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10		2027783	88326970	255	17768											
TSC2	7249	ucsc.edu;bcgsc.ca	37	16	2136204	2136204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSC2	NM_000548	exon37	c.A4673G	p.E1558G	ACAGCGAGCTCGC	.	37	4	33	0	.	1908	G	2136204	A	G	2136204	3	3	140	1	0	0	0	0	1	0	0	0	16603	304	11	2	4815	2	TSC2	16	2136204	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	108421	2136204	88218549	256	17769											
CREBBP	1387	ucsc.edu;bcgsc.ca	37	16	3801728	3801728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CREBBP	NM_004380	exon20	c.A3778G	p.T1260A	CTTACGTCTGGGG	.	38	4	53	0	.	1807	C	3801728	T	C	3801728	3	2	140	1	0	0	0	0	1	0	0	0	3861	1681	58	2	3598	2	CREBBP	16	3801728	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	1665524	3801728	86553025	257	17770											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19049310	19049310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMC7	NM_024847	exon8	c.G1120T	p.G374W	GTTTTAGGGGCAT	.	161	85	177	0	.	93	T	19049310	G	T	19049310	3	4	140	1	0	0	0	0	1	0	0	0	15987	1000	35	3	1150	3	TMC7	16	19049310	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	15247582	19049310	71305443	258	17771											
GTF3C1	2975	ucsc.edu;bcgsc.ca	37	16	27474886	27474886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GTF3C1	NM_001520	exon35	c.A5900G	p.N1967S	GAGATGTTGGCAG	.	36	4	36	0	.	94	C	27474886	T	C	27474886	3	2	140	1	0	0	0	0	1	0	0	0	6872	1725	60	2	441	2	GTF3C1	16	27474886	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	8425576	27474886	62879867	259	17772											
KIF22	3835	ucsc.edu;bcgsc.ca	37	16	29816207	29816207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF22	NM_007317	exon12	c.C1750A	p.L584I	CCGGAGCTACTGG	.	33	4	26	0	.	68	A	29816207	C	A	29816207	3	1	140	1	0	0	0	0	1	0	0	0	8290	796	28	3	1796	3	KIF22	16	29816207	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2341321	29816207	60538546	260	17773											
ZNF646	9726	ucsc.edu;bcgsc.ca	37	16	31091072	31091072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF646	NM_014699	exon2	c.G3427A	p.G1143R	GAGGAGGGGCCGG	.	34	4	38	0	.	153	A	31091072	G	A	31091072	3	1	140	1	0	0	0	0	1	0	0	0	18059	1232	43	3	3429	3	ZNF646	16	31091072	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1274865	31091072	59263681	261	17774											
FUS	2521	broad.mit.edu;bcgsc.ca	37	16	31193931	31193931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FUS	NM_001170634	exon3	c.G136C	p.D46H	TCCACGGACACTT	.	98	6	95	0	.	1719	C	31193931	G	C	31193931	3	2	140	1	0	0	0	0	1	0	0	0	6100	1174	41	4	146	4	FUS	16	31193931	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	102859	31193931	59160822	262	17775											
CNOT1	23019	ucsc.edu;bcgsc.ca	37	16	58568277	58568277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNOT1	NM_016284	exon40	c.A5669G	p.K1890R	TCGGTCTTCAGTA	.	22	4	23	0	.	95	C	58568277	T	C	58568277	3	2	140	1	0	0	0	0	1	0	0	0	3617	1609	56	2	1501	2	CNOT1	16	58568277	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	27374346	58568277	31786476	263	17776											
EDC4	23644	ucsc.edu;bcgsc.ca	37	16	67911468	67911468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EDC4	NM_014329	exon6	c.G698T	p.R233L	ACTTTCGCAGGAT	.	45	4	34	0	.	92	T	67911468	G	T	67911468	3	4	140	1	0	0	0	0	1	0	0	0	4908	1087	38	1	720	1	EDC4	16	67911468	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	9343191	67911468	22443285	264	17777											
ESRP2	80004	ucsc.edu;bcgsc.ca	37	16	68265213	68265213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ESRP2	NM_024939	exon12	c.C1579A	p.R527S	GGCAACGCTGAGC	.	49	4	83	0	.	91	T	68265213	G	T	68265213	3	4	140	1	0	0	0	0	1	0	0	0	5259	1087	38	1	590	1	ESRP2	16	68265213	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	353745	68265213	22089540	265	17778											
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77389917	77389917	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS18	NM_199355	exon9	c.C1380A	p.I460I	AGACATGATATTG	.	41	4	87	0	.	1036	T	77389917	G	T	77389917	2	4	140	1	0	0	0	0	0	0	0	1	263	1280	45	3		3	ADAMTS18	16	77389917	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	9124704	77389917	12964836	266	17779											
PKD1L2	114780	ucsc.edu;bcgsc.ca	37	16	81241133	81241133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKD1L2	NM_001076780	exon5	c.A868T	p.T290S	CTCCTGTACTAAT	.	44	4	59	0	.	92	A	81241133	T	A	81241133	3	1	140	1	0	0	0	0	1	0	0	0	11965	1638	57	4	6736	4	PKD1L2	16	81241133	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	3851216	81241133	9113620	267	17780											
SLC7A5	8140	ucsc.edu;bcgsc.ca	37	16	87868106	87868106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC7A5	NM_003486	exon9	c.G1382T	p.G461V	GTGAAGCCGATGC	.	45	4	80	0	.	90	A	87868106	C	A	87868106	3	1	140	1	0	0	0	0	1	0	0	0	14700	739	26	3	149	3	SLC7A5	16	87868106	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	6626973	87868106	2486647	268	17781											
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	16	88949122	88949122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CBFA2T3	NM_005187	exon8	c.G1165A	p.E389K	CACGCTCTGTGAG	.	31	6	41	0	.	722	T	88949122	C	T	88949122	3	4	140	1	0	0	0	0	1	0	0	0	2698	922	32	3	816	3	CBFA2T3	16	88949122	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1081016	88949122	1405631	269	17782											
NUP88	4927	ucsc.edu;bcgsc.ca	37	17	5292266	5292266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP88	NM_002532	exon11	c.C1499A	p.P500Q	GACGCTGGATGGA	.	39	4	58	1	.	204	T	5292266	G	T	5292266	3	4	140	1	0	0	0	0	1	0	0	0	10771	1348	47	3	754	3	NUP88	17	5292266	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10		5292266	75902944	270	17783											
ACADVL	37	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7124266	7124266	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACADVL	NM_001270447	exon7	c.T435C	p.N145N	CAAGAATGACGCT	.	40	9	52	0	.	93	C	7124266	T	C	7124266	2	2	140	1	0	0	0	0	0	0	0	1	116	1461	51	2		2	ACADVL	17	7124266	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	1832000	7124266	74070944	271	17784											
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11806049	11806049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH9	NM_001372	exon60	c.T11420C	p.M3807T	CATCAATGGAAGA	.	36	4	47	0	.	168	C	11806049	T	C	11806049	3	2	140	1	0	0	0	0	1	0	0	0	4608	1464	51	2	11658	2	DNAH9	17	11806049	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	4681783	11806049	69389161	272	17785											
TRPV2	51393	ucsc.edu;bcgsc.ca	37	17	16335396	16335396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPV2	NM_016113	exon12	c.A1771G	p.R591G	CAGTACAGGGGTA	.	48	4	66	0	.	91	G	16335396	A	G	16335396	3	3	140	1	0	0	0	0	1	0	0	0	16593	179	7	2	1813	2	TRPV2	17	16335396	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	4529347	16335396	64859814	273	17786											
ULK2	9706	ucsc.edu;bcgsc.ca	37	17	19684355	19684355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ULK2	NM_001142610	exon24	c.T2702C	p.L901P	TTGGCAAGATGCA	.	45	4	82	1	.	334	G	19684355	A	G	19684355	3	3	140	1	0	0	0	0	1	0	0	0	16973	72	3	2	424	2	ULK2	17	19684355	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	3348959	19684355	61510855	274	17787											
KSR1	8844	ucsc.edu;bcgsc.ca	37	17	25944438	25944438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KSR1	NM_014238	exon20	c.T2266C	p.F756L	GGACACTTCTGGA	.	24	4	22	0	.	964	C	25944438	T	C	25944438	3	2	140	1	0	0	0	0	1	0	0	0	8581	1609	56	2	2332	2	KSR1	17	25944438	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	6260083	25944438	55250772	275	17788											
KRT35	3886	ucsc.edu;bcgsc.ca	37	17	39636914	39636914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRT35	NM_002280	exon1	c.T436C	p.S146P	AGTAGGACTGGTA	.	28	4	40	0	.	92	G	39636914	A	G	39636914	3	3	140	1	0	0	0	0	1	0	0	0	8472	275	10	2	959	2	KRT35	17	39636914	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	13692476	39636914	41558296	276	17789											
AOC2	314	ucsc.edu;bcgsc.ca	37	17	41001156	41001156	+	Missense_Mutation	SNP	C	C	T	rs138179430	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AOC2	NM_009590	exon2	c.C1642T	p.P548S	GCTGCCCCCTGGA	.	47	4	45	0	C|1.000;A|0.000	92	T	41001156	C	T	41001156	3	4	140	1	0	0	0	0	1	0	0	0	727	623	22	3	1648	3	AOC2	17	41001156	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1364242	41001156	40194054	277	17790											
ARHGAP27	201176	ucsc.edu;bcgsc.ca	37	17	43475409	43475409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP27	NM_199282	exon10	c.G725A	p.R242Q	CGGCTCCGTAGCT	.	41	4	46	0	.	90	T	43475409	C	T	43475409	3	4	140	1	0	0	0	0	1	0	0	0	876	652	23	1	953	1	ARHGAP27	17	43475409	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2474253	43475409	37719801	278	17791											
WBP2	23558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73851333	73851333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WBP2	NM_012478	exon1	c.A46G	p.N16D	TGTTATTGACGAT	.	105	98	85	0	.	90	C	73851333	T	C	73851333	3	2	140	1	0	0	0	0	1	0	0	0	17256	1812	63	2	771	2	WBP2	17	73851333	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	30375924	73851333	7343877	279	17792											
USP14	9097	ucsc.edu;bcgsc.ca	37	18	210405	210405	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP14	NM_005151	exon15	c.T1245C	p.C415C	TAATTGTGGATAC	.	48	4	100	0	.	659	C	210405	T	C	210405	2	2	140	1	0	0	0	0	0	0	0	1	17042	1702	59	2		2	USP14	18	210405	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10		210405	77866843	280	17793											
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	742994	742994	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon8	c.A984G	p.R328R	ATCATGTCTTAAT	.	132	69	184	0	.	547	C	742994	T	C	742994	2	2	140	1	0	0	0	0	0	0	0	1	17471	1664	58	2		2	YES1	18	742994	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	532589	742994	77334254	281	17794											
YES1	7525	ucsc.edu;bcgsc.ca	37	18	747938	747938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon4	c.A452G	p.D151G	ATGGAATCTGCAG	.	37	4	58	0	.	547	C	747938	T	C	747938	3	2	140	1	0	0	0	0	1	0	0	0	17471	1435	50	2	1215	2	YES1	18	747938	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	4944	747938	77329310	282	17795											
ARHGAP28	79822	ucsc.edu;bcgsc.ca	37	18	6851048	6851048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP28	NM_001010000	exon3	c.G82A	p.G28S	ACCTGTGGCAACC	.	42	4	58	0	.	91	A	6851048	G	A	6851048	3	1	140	1	0	0	0	0	1	0	0	0	877	1348	47	3	88	3	ARHGAP28	18	6851048	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	6103110	6851048	71226200	283	17796											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6975955	6975955	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA1	NM_005559	exon45	c.A6470T	p.Y2157F	CCGAGGTAGAAGA	.	89	24	109	0	.	149	A	6975955	T	A	6975955	3	1	140	1	0	0	0	0	1	0	0	0	8605	1638	57	4	2833	4	LAMA1	18	6975955	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	124907	6975955	71101293	284	17797											
RAB31	11031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9859227	9859227	+	Missense_Mutation	SNP	C	C	A	rs147665641	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB31	NM_006868	exon7	c.C493A	p.R165S	GCAGGCCGCCAGA	.	41	12	68	0	C|0.999;T|0.001	205	A	9859227	C	A	9859227	3	1	140	1	0	0	0	0	1	0	0	0	12920	652	23	1	519	1	RAB31	18	9859227	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2883272	9859227	68218021	285	17798											
CEP192	55125	ucsc.edu;bcgsc.ca	37	18	13049025	13049025	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP192	NM_032142	exon16	c.C2235T	p.T745T	TAAAACCAGAGAC	.	58	5	81	0	.	27	T	13049025	C	T	13049025	2	4	140	1	0	0	0	0	0	0	0	1	3251	581	21	3		3	CEP192	18	13049025	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	3189798	13049025	65028223	286	17799											
ANKRD30B	374860	broad.mit.edu;bcgsc.ca	37	18	14850376	14850376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD30B	NM_001145029	exon35	c.A3202G	p.N1068D	AATTTGAATCAGG	.	174	9	251	0	.	24	G	14850376	A	G	14850376	3	3	140	1	0	0	0	0	1	0	0	0	659	246	9	2	3340	2	ANKRD30B	18	14850376	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	1801351	14850376	63226872	287	17800											
DSG4	147409	ucsc.edu;bcgsc.ca	37	18	28991246	28991246	+	Silent	SNP	G	G	A	rs143025218		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSG4	NM_001134453	exon14	c.G2247A	p.S749S	TGTATCGGGAGTG	.	50	5	54	0	A|0.000;C|0.000;G|1.000	177	A	28991246	G	A	28991246	2	1	140	1	0	0	0	0	0	0	0	1	4779	1103	39	1		1	DSG4	18	28991246	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	14140870	28991246	49086002	288	17801											
MBD1	4152	ucsc.edu;bcgsc.ca	37	18	47800080	47800080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD1	NM_001204137	exon13	c.C1375A	p.H459N	GGGTATGGTCTGG	.	46	4	76	0	.	228	T	47800080	G	T	47800080	3	4	140	1	0	0	0	0	1	0	0	0	9342	1348	47	3	731	3	MBD1	18	47800080	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	18808834	47800080	30277168	289	17802											
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56415027	56415027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MALT1	NM_006785	exon17	c.G2428A	p.E810K	ACTGATGAAATAC	.	81	35	100	0	.	660	A	56415027	G	A	56415027	3	1	140	1	0	0	0	0	1	0	0	0	9202	1291	45	3	2494	3	MALT1	18	56415027	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	8614947	56415027	21662221	290	17803											
DSEL	92126	ucsc.edu;bcgsc.ca	37	18	65181701	65181701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSEL	NM_032160	exon2	c.G175T	p.D59Y	TGAAATCTTGCAC	.	38	5	54	0	.	157	A	65181701	C	A	65181701	3	1	140	1	0	0	0	0	1	0	0	0	4775	913	32	3	3497	3	DSEL	18	65181701	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	8766674	65181701	12895547	291	17804											
CNDP2	55748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72185845	72185845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNDP2	NM_018235	exon10	c.T1180A	p.Y394N	CCTCATTACCTGG	.	36	7	45	1	.	93	A	72185845	T	A	72185845	3	1	140	1	0	0	0	0	1	0	0	0	3594	1754	61	4	1214	4	CNDP2	18	72185845	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	7004144	72185845	5891403	292	17805											
AZU1	566	ucsc.edu;bcgsc.ca	37	19	831774	831774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AZU1	NM_001700	exon5	c.C653T	p.S218F	CCTTTTCCCTGGG	.	32	4	67	0	.	91	T	831774	C	T	831774	3	4	140	1	0	0	0	0	1	0	0	0	1243	855	30	3	671	3	AZU1	19	831774	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		831774	58297209	293	17806											
ATCAY	85300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3905457	3905457	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATCAY	NM_033064	exon4	c.C162T	p.N54N	TTTCAACGGAGCG	.	42	10	61	0	.	67	T	3905457	C	T	3905457	2	4	140	1	0	0	0	0	0	0	0	1	1077	535	19	1		1	ATCAY	19	3905457	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	3073683	3905457	55223526	294	17807											
VAV1	7409	ucsc.edu;bcgsc.ca	37	19	6825416	6825416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	VAV1,NS,malignant_melanoma,-1	VAV1	NM_005428	exon8	c.A826G	p.R276G	AAGGAGAGGTGAG	.	35	4	34	0	.	1276	G	6825416	A	G	6825416	3	3	140	1	0	0	0	0	1	0	0	0	17128	318	11	2	856	2	VAV1	19	6825416	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	2919959	6825416	52303567	295	17808											
S1PR5	53637	ucsc.edu;bcgsc.ca	37	19	10625491	10625491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	S1PR5	NM_030760	exon2	c.G197T	p.R66L	TGGAAGCGCGGGT	.	24	4	27	0	.	523	A	10625491	C	A	10625491	3	1	140	1	0	0	0	0	1	0	0	0	13797	768	27	1	1003	1	S1PR5	19	10625491	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	3800075	10625491	48503492	296	17809											
ZNF69	7620	ucsc.edu;bcgsc.ca	37	19	11998759	11998759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF69	NM_021915	exon1	c.G21T	p.R7S	TCACAGGAGGTGT	.	37	4	40	0	.	91	T	11998759	G	T	11998759	3	4	140	1	0	0	0	0	1	0	0	0	18092	1165	41	3	23	3	ZNF69	19	11998759	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	1373268	11998759	47130224	297	17810											
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16989085	16989085	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SIN3B	NM_015260	exon19	c.3142delG	p.V1048fs	GTGGGCGTGGAGA	.	16	16	20	0	.	228	-	16989085	G	-	16989085	7	5	140	1	0	1	0	1	0	0	0	0	14326	1145	40	0	3216	0	SIN3B	19	16989085	Frame_Shift_Del	DEL	G	TCGA-G3-A25S-01A-11D-A16V-10	4990326	16989085	42139898	298	17811											
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36050920	36050920	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP4A	NM_000704	exon7	c.C843T	p.I281I	CGATGCGATGCGC	.	43	4	70	0	.	91	A	36050920	G	A	36050920	2	1	140	1	0	0	0	0	0	0	0	1	1145	1048	37	1		1	ATP4A	19	36050920	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	19061835	36050920	23078063	299	17812											
SPTBN4	57731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41009905	41009905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPTBN4	NM_020971	exon12	c.G1531C	p.D511H	CAGCGTGACAGCG	.	63	40	65	1	.	94	C	41009905	G	C	41009905	3	2	140	1	0	0	0	0	1	0	0	0	15120	1290	45	4	1573	4	SPTBN4	19	41009905	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	4958985	41009905	18119078	300	17813											
DHX34	9704	ucsc.edu;bcgsc.ca	37	19	47856347	47856347	+	Missense_Mutation	SNP	C	C	A	rs184418357	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX34	NM_014681	exon2	c.C60A	p.S20R	TCCCAGCGAGGAA	.	36	4	45	0	C|0.999;T|0.000	231	A	47856347	C	A	47856347	3	1	140	1	0	0	0	0	1	0	0	0	4507	767	27	1	62	1	DHX34	19	47856347	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	6846442	47856347	11272636	301	17814											
FAM71E1	112703	ucsc.edu;bcgsc.ca	37	19	50979111	50979111	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM71E1	NM_138411	exon2	c.C339A	p.I113I	CTCAAAGATGGGG	.	41	4	44	0	.	44	T	50979111	G	T	50979111	2	4	140	1	0	0	0	0	0	0	0	1	5611	932	33	3		3	FAM71E1	19	50979111	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	3122764	50979111	8149872	302	17815											
KLK4	9622	ucsc.edu;bcgsc.ca	37	19	51411692	51411692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KLK4	NM_004917	exon4	c.A535G	p.S179G	GCTTACTGCAGAC	.	43	5	38	0	.	226	C	51411692	T	C	51411692	3	2	140	1	0	0	0	0	1	0	0	0	8406	1580	55	2	237	2	KLK4	19	51411692	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	432581	51411692	7717291	303	17816											
ZNF577	84765	ucsc.edu;bcgsc.ca	37	19	52375795	52375795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF577	NM_032679	exon7	c.T1448A	p.V483E	TCTGATACAATAT	.	38	5	43	0	.	91	T	52375795	A	T	52375795	3	4	140	1	0	0	0	0	1	0	0	0	18006	391	14	4	13	4	ZNF577	19	52375795	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	964103	52375795	6753188	304	17817											
ZNF534	147658	ucsc.edu;bcgsc.ca	37	19	52941840	52941840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF534	NM_001143939	exon4	c.A1166G	p.H389R	AAGTTCATACTGG	.	41	4	58	0	.	68	G	52941840	A	G	52941840	3	3	140	1	0	0	0	0	1	0	0	0	17970	217	8	2	1180	2	ZNF534	19	52941840	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	566045	52941840	6187143	305	17818											
NLRP13	126204	ucsc.edu;bcgsc.ca	37	19	56423971	56423971	+	Silent	SNP	T	T	C	rs149489544	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	NLRP13,NS,carcinoma,0	NLRP13	NM_176810	exon5	c.A1212G	p.E404E	CTCAACTTCACTT	.	60	6	41	0	T|1.000;G|0.000	211	C	56423971	T	C	56423971	2	2	140	1	0	0	0	0	0	0	0	1	10475	1606	56	2		2	NLRP13	19	56423971	Silent	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	3482131	56423971	2705012	306	17819											
ZNF671	79891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58232430	58232430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF671	NM_024833	exon4	c.G1024A	p.E342K	TGCACTCGTATGG	.	34	6	48	0	.	91	T	58232430	C	T	58232430	3	4	140	1	0	0	0	0	1	0	0	0	18075	893	31	1	584	1	ZNF671	19	58232430	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	1808459	58232430	896553	307	17820											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8626827	8626827	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLCB1	NM_015192	exon5	c.A463A	p.S155S	GAAAAAGCGTAAG	.	121	16	137	0	.	297	A	8626827	G	A	8626827	2	1	140	1	0	0	0	0	0	0	0	1	12027	985	34	3		3	PLCB1	20	8626827	Silent	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10		8626827	54398693	308	17821											
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	30897746	30897746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF3B	NM_004798	exon2	c.166delA	p.T56fs	CCCAAGACCTTCA	.	68	19	97	0	.	517	-	30897746	A	-	30897746	7	5	140	1	0	1	0	1	0	0	0	0	8301	275	10	0	168	0	KIF3B	20	30897746	Frame_Shift_Del	DEL	A	TCGA-G3-A25S-01A-11D-A16V-10	22270919	30897746	32127774	309	17822											
ASXL1	171023	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31021262	31021262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASXL1	NM_015338	exon11	c.A1261G	p.R421G	AGAGCCAGAAGGA	.	42	5	51	0	.	2057	G	31021262	A	G	31021262	3	3	140	1	0	0	0	0	1	0	0	0	1066	180	7	2	1313	2	ASXL1	20	31021262	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	123516	31021262	32004258	310	17823											
GGT7	2686	ucsc.edu;bcgsc.ca	37	20	33447305	33447305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GGT7	NM_178026	exon7	c.A955G	p.T319A	CGGAGGTGCCAAG	.	37	4	38	1	.	91	C	33447305	T	C	33447305	3	2	140	1	0	0	0	0	1	0	0	0	6364	1696	59	2	1069	2	GGT7	20	33447305	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	2426043	33447305	29578215	311	17824											
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34022378	34022378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GDF5	NM_000557	exon2	c.G835A	p.D279N	GCACATCCAGCAA	.	51	12	50	0	.	226	T	34022378	C	T	34022378	3	4	140	1	0	0	0	0	1	0	0	0	6316	855	30	3	674	3	GDF5	20	34022378	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	575073	34022378	29003142	312	17825											
TFAP2C	7022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55212882	55212882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TFAP2C	NM_003222	exon7	c.G1166A	p.C389Y	AGAACTGCTTGTC	.	63	7	72	0	.	514	A	55212882	G	A	55212882	3	1	140	1	0	0	0	0	1	0	0	0	15786	1319	46	3	1192	3	TFAP2C	20	55212882	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	21190504	55212882	7812638	313	17826											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	57767023	57767023	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF831	NM_178457	exon1	c.C949A	p.R317R	CTGCAGCGGCAGC	.	16	10	19	0	.	126	A	57767023	C	A	57767023	2	1	140	1	0	0	0	0	0	0	0	1	18182	759	27	1		1	ZNF831	20	57767023	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	2554141	57767023	5258497	314	17827											
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60886538	60886538	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA5	NM_005560	exon72	c.T9861C	p.N3287N	GCTCACATTGACG	.	65	23	72	0	.	93	G	60886538	A	G	60886538	2	3	140	1	0	0	0	0	0	0	0	1	8609	214	8	2		2	LAMA5	20	60886538	Silent	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	3119515	60886538	2138982	315	17828											
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17197365	17197365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP25	NM_013396	exon12	c.A1289G	p.Q430R	TATTACAACAAAG	.	157	36	275	0	.	663	G	17197365	A	G	17197365	3	3	140	1	0	0	0	0	1	0	0	0	17053	130	5	2	1335	2	USP25	21	17197365	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10		17197365	30932530	316	17829											
HUNK	30811	ucsc.edu;bcgsc.ca	37	21	33340670	33340670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HUNK	NM_014586	exon6	c.T983C	p.V328A	GCAAAGTGCCCTG	.	23	4	56	0	.	334	C	33340670	T	C	33340670	3	2	140	1	0	0	0	0	1	0	0	0	7458	1696	59	2	1005	2	HUNK	21	33340670	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	16143305	33340670	14789225	317	17830											
TTC3	7267	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	38532006	38532006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC3	NM_001001894	exon29	c.C2998T	p.R1000C	GACAGCCGCTGTA	.	26	6	43	0	.	590	T	38532006	C	T	38532006	3	4	140	1	0	0	0	0	1	0	0	0	16694	652	23	1	3108	1	TTC3	21	38532006	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	5191336	38532006	9597889	318	17831											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38538901	38538901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC3	NM_001001894	exon33	c.A4385G	p.Q1462R	ACGTGCAGATGGT	.	67	21	108	0	.	590	G	38538901	A	G	38538901	3	3	140	1	0	0	0	0	1	0	0	0	16694	188	7	2	4511	2	TTC3	21	38538901	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	6895	38538901	9590994	319	17832											
AGPAT3	56894	broad.mit.edu;ucsc.edu	37	21	45397993	45397993	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AGPAT3	NM_001037553	exon7	c.C834G	p.Y278X	ACTGTACCAGGAG	.	10	5	23	0	.	90	G	45397993	C	G	45397993	4	3	140	1	0	0	0	0	0	1	0	0	388	518	18	4	856	4	AGPAT3	21	45397993	Nonsense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	6859092	45397993	2731902	320	17833											
PLA2G6	8398	ucsc.edu;bcgsc.ca	37	22	38508273	38508273	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLA2G6	NM_003560	exon17	c.G2316A	p.E772E	ACTGACCTCATCC	.	25	4	28	0	.	91	T	38508273	C	T	38508273	2	4	140	1	0	0	0	0	0	0	0	1	12008	680	24	3		3	PLA2G6	22	38508273	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		38508273	12796293	321	17834											
APOBEC3G	60489	ucsc.edu;bcgsc.ca	37	22	39482347	39482347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APOBEC3G	NM_021822	exon6	c.C799A	p.P267T	GTGATTCCCTTTT	.	39	4	48	0	.	227	A	39482347	C	A	39482347	3	1	140	1	0	0	0	0	1	0	0	0	794	855	30	3	821	3	APOBEC3G	22	39482347	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	974074	39482347	11822219	322	17835											
BIK	638	ucsc.edu;bcgsc.ca	37	22	43520125	43520125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BIK	NM_001197	exon2	c.A97G	p.T33A	GGCATGACTGACT	.	37	4	61	0	.	651	G	43520125	A	G	43520125	3	3	140	1	0	0	0	0	1	0	0	0	1431	275	10	2	99	2	BIK	22	43520125	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	4037778	43520125	7784441	323	17836											
MLC1	23209	ucsc.edu;bcgsc.ca	37	22	50512719	50512719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLC1	NM_015166	exon8	c.A640G	p.I214V	CAATGATCCCCCC	.	37	4	39	0	.	91	C	50512719	T	C	50512719	3	2	140	1	0	0	0	0	1	0	0	0	9612	1435	50	2	513	2	MLC1	22	50512719	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	6992594	50512719	791847	324	17837											
REPS2	9185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17095520	17095520	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REPS2	NM_004726	exon13	c.C1506T	p.P502P	CCAGCCCAGTGTG	.	33	15	26	0	.	131	T	17095520	C	T	17095520	2	4	140	1	0	0	0	0	0	0	0	1	13229	581	21	3		3	REPS2	23	17095520	Silent	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10		17095520	138175040	325	17838											
CXorf58	254158	ucsc.edu;bcgsc.ca	37	X	23953505	23953505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CXorf58	NM_152761	exon7	c.A748G	p.I250V	CAAGAGATCCATA	.	37	4	32	0	.	130	G	23953505	A	G	23953505	3	3	140	1	0	0	0	0	1	0	0	0	4114	333	12	2	770	2	CXorf58	23	23953505	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	6857985	23953505	131317055	326	17839											
MAGEB3	4114	ucsc.edu;bcgsc.ca	37	X	30254253	30254253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAGEB3	NM_002365	exon5	c.C212A	p.T71N	TATCCACCACTAC	.	45	4	46	0	.	130	A	30254253	C	A	30254253	3	1	140	1	0	0	0	0	1	0	0	0	9177	507	18	3	214	3	MAGEB3	23	30254253	Missense_Mutation	SNP	C	TCGA-G3-A25S-01A-11D-A16V-10	6300748	30254253	125016307	327	17840											
MAOA	4128	ucsc.edu;bcgsc.ca	37	X	43571197	43571197	+	Missense_Mutation	SNP	A	A	G	rs1800464	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAOA	NM_000240	exon4	c.A385G	p.R129G	CTGTGGAGGACAA	.	37	4	53	0	A|0.740;0|0.061	194	G	43571197	A	G	43571197	3	3	140	1	0	0	0	0	1	0	0	0	9225	295	11	2	399	2	MAOA	23	43571197	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	13316944	43571197	111699363	328	17841											
FAM120C	54954	ucsc.edu;bcgsc.ca	37	X	54160309	54160309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM120C	NM_017848	exon8	c.C1787A	p.T596N	GGAATGGTGATAT	.	47	4	32	0	.	131	T	54160309	G	T	54160309	3	4	140	1	0	0	0	0	1	0	0	0	5418	1261	44	3	1539	3	FAM120C	23	54160309	Missense_Mutation	SNP	G	TCGA-G3-A25S-01A-11D-A16V-10	10589112	54160309	101110251	329	17842											
NONO	4841	ucsc.edu;bcgsc.ca	37	X	70514267	70514267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NONO	NM_001145408	exon6	c.T539C	p.I180T	TAGTCATTGTGGA	.	41	4	53	0	.	231	C	70514267	T	C	70514267	3	2	140	1	0	0	0	0	1	0	0	0	10534	1493	52	2	549	2	NONO	23	70514267	Missense_Mutation	SNP	T	TCGA-G3-A25S-01A-11D-A16V-10	16353958	70514267	84756293	330	17843											
LUZP4	51213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114541215	114541215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LUZP4	NM_016383	exon4	c.A788G	p.Q263R	CCACTCAGAGAGA	.	104	64	97	1	.	132	G	114541215	A	G	114541215	3	3	140	1	0	0	0	0	1	0	0	0	9088	188	7	2	802	2	LUZP4	23	114541215	Missense_Mutation	SNP	A	TCGA-G3-A25S-01A-11D-A16V-10	44026948	114541215	40729345	331	17844											
ZBTB48	3104	ucsc.edu;bcgsc.ca	37	1	6646059	6646059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZBTB48	NM_005341	exon4	c.A1013G	p.E338G	AGCATGAAGCCCG	.	44	4	56	0	.	514	G	6646059	A	G	6646059	3	3	141	1	0	0	0	0	1	0	0	0	17546	246	9	2	1023	2	ZBTB48	1	6646059	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10		6646059	242604562	1	17845											
PIK3CD	5293	ucsc.edu;bcgsc.ca	37	1	9776674	9776674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIK3CD	NM_005026	exon6	c.C777A	p.F259L	CCAGTTCCAGGTG	.	39	4	50	0	.	1311	A	9776674	C	A	9776674	3	1	141	1	0	0	0	0	1	0	0	0	11915	854	30	3	791	3	PIK3CD	1	9776674	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	3130615	9776674	239473947	2	17846											
PLOD1	5351	ucsc.edu;bcgsc.ca	37	1	12020740	12020740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLOD1	NM_000302	exon10	c.C1013T	p.A338V	TCCTGGCACAGCA	.	35	4	36	0	.	155	T	12020740	C	T	12020740	3	4	141	1	0	0	0	0	1	0	0	0	12101	710	25	3	1051	3	PLOD1	1	12020740	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	2244066	12020740	237229881	3	17847											
EPHB2	2048	ucsc.edu;bcgsc.ca	37	1	23232519	23232519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHB2	NM_004442	exon10	c.A1808T	p.Y603F	TCACCTACGAGGA	.	41	4	43	0	.	1381	T	23232519	A	T	23232519	3	4	141	1	0	0	0	0	1	0	0	0	5175	391	14	4	1846	4	EPHB2	1	23232519	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	11211779	23232519	226018102	4	17848											
EPHB2	2048	ucsc.edu;bcgsc.ca	37	1	23234452	23234452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHB2	NM_004442	exon12	c.G2146A	p.D716N	CAAAACGATGGGC	.	43	4	61	0	.	1381	A	23234452	G	A	23234452	3	1	141	1	0	0	0	0	1	0	0	0	5175	1058	37	1	2192	1	EPHB2	1	23234452	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1933	23234452	226016169	5	17849											
FGR	2268	ucsc.edu;bcgsc.ca	37	1	27942344	27942344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGR	NM_001042729	exon8	c.G694A	p.G232R	ACAGCCCGTCATT	.	48	4	59	0	.	547	T	27942344	C	T	27942344	3	4	141	1	0	0	0	0	1	0	0	0	5874	652	23	1	919	1	FGR	1	27942344	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	4707892	27942344	221308277	6	17850											
PHC2	1912	ucsc.edu;bcgsc.ca	37	1	33832734	33832734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHC2	NM_198040	exon6	c.A959G	p.H320R	AGGGGGTGGGCAG	.	43	4	43	0	.	227	C	33832734	T	C	33832734	3	2	141	1	0	0	0	0	1	0	0	0	11817	1696	59	2	1653	2	PHC2	1	33832734	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	5890390	33832734	215417887	7	17851											
CYP4Z1	199974	ucsc.edu;bcgsc.ca	37	1	47533245	47533245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP4Z1	NM_178134	exon1	c.A83G	p.Q28R	TGTTTCAGGTAAT	.	52	4	51	0	.	91	G	47533245	A	G	47533245	3	3	141	1	0	0	0	0	1	0	0	0	4194	188	7	2	85	2	CYP4Z1	1	47533245	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	13700511	47533245	201717376	8	17852											
LPHN2	23266	ucsc.edu;bcgsc.ca	37	1	82417786	82417786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPHN2	NM_012302	exon8	c.A1742G	p.K581R	AACTGAAACCTAG	.	63	5	53	0	.	525	G	82417786	A	G	82417786	3	3	141	1	0	0	0	0	1	0	0	0	8916	14	1	2	1768	2	LPHN2	1	82417786	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	34884541	82417786	166832835	9	17853											
GBP4	115361	ucsc.edu;bcgsc.ca	37	1	89664501	89664501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GBP4	NM_052941	exon1	c.T17C	p.L6P	GCGTGAAGAGTTC	.	36	4	25	0	.	90	G	89664501	A	G	89664501	3	3	141	1	0	0	0	0	1	0	0	0	6276	72	3	2	1949	2	GBP4	1	89664501	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	7246715	89664501	159586120	10	17854											
SLC44A3	126969	ucsc.edu;bcgsc.ca	37	1	95293104	95293104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC44A3	NM_001114106	exon4	c.G320A	p.G107D	TCAAAGGTACGCA	.	44	4	52	0	.	91	A	95293104	G	A	95293104	3	1	141	1	0	0	0	0	1	0	0	0	14637	1261	44	3	334	3	SLC44A3	1	95293104	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	5628603	95293104	153957517	11	17855											
AKNAD1	254268	ucsc.edu;bcgsc.ca	37	1	109363223	109363223	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKNAD1	NM_152763	exon14	c.T2193C	p.C731C	CTGAGAACAGATC	.	41	4	30	0	.	93	G	109363223	A	G	109363223	2	3	141	1	0	0	0	0	0	0	0	1	464	41	2	2		2	AKNAD1	1	109363223	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	14070119	109363223	139887398	12	17856											
WDR47	22911	ucsc.edu;bcgsc.ca	37	1	109553939	109553939	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDR47	NM_001142550	exon5	c.T750C	p.S250S	CAGTAAACTCAGA	.	42	5	50	0	.	91	G	109553939	A	G	109553939	2	3	141	1	0	0	0	0	0	0	0	1	17297	40	2	2		2	WDR47	1	109553939	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	190716	109553939	139696682	13	17857											
EPS8L3	79574	ucsc.edu;bcgsc.ca	37	1	110301155	110301155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPS8L3	NM_139053	exon7	c.C595A	p.L199I	GCTCTAGGGTCCT	.	48	4	48	0	.	93	T	110301155	G	T	110301155	3	4	141	1	0	0	0	0	1	0	0	0	5197	991	35	3	1241	3	EPS8L3	1	110301155	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	747216	110301155	138949466	14	17858											
NOTCH2	4853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120529697	120529697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOTCH2	NM_001200001	exon5	c.G760A	p.G254R	TGCTCCCTTCAAA	.	27	6	19	0	.	1441	T	120529697	C	T	120529697	3	4	141	1	0	0	0	0	1	0	0	0	10548	681	24	3	6775	3	NOTCH2	1	120529697	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	10228542	120529697	128720924	15	17859											
C1orf51	148523	ucsc.edu;bcgsc.ca	37	1	150256042	150256042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1orf51	NM_144697	exon1	c.A365G	p.K122R	CCCAGAAGGTAAG	.	44	4	49	0	.	90	G	150256042	A	G	150256042	3	3	141	1	0	0	0	0	1	0	0	0	2043	86	3	2	367	2	C1orf51	1	150256042	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	29726345	150256042	98994579	16	17860											
FAM63A	55793	ucsc.edu;bcgsc.ca	37	1	150975098	150975098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM63A	NM_001163258	exon3	c.T140C	p.L47S	ATGGTCAAAAGGG	.	33	4	31	0	.	91	G	150975098	A	G	150975098	3	3	141	1	0	0	0	0	1	0	0	0	5596	131	5	2	1449	2	FAM63A	1	150975098	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	719056	150975098	98275523	17	17861											
NPR1	4881	ucsc.edu;bcgsc.ca	37	1	153660119	153660119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NPR1	NM_000906	exon14	c.G2102T	p.W701L	AGCTGTGGACGGC	.	42	4	33	0	.	393	T	153660119	G	T	153660119	3	4	141	1	0	0	0	0	1	0	0	0	10594	1357	47	3	2156	3	NPR1	1	153660119	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	2685021	153660119	95590502	18	17862											
SHC1	6464	ucsc.edu;bcgsc.ca	37	1	154938479	154938479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SHC1	NM_001130040	exon10	c.G1330A	p.A444T	GCCCAGCACCACC	.	49	4	36	0	.	847	T	154938479	C	T	154938479	3	4	141	1	0	0	0	0	1	0	0	0	14270	710	25	3	436	3	SHC1	1	154938479	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	1278360	154938479	94312142	19	17863											
HAPLN2	60484	ucsc.edu;bcgsc.ca	37	1	156593366	156593366	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HAPLN2	NM_021817	exon3	c.A84G	p.P28P	AGACCCAGGTAAG	.	40	4	35	0	.	90	G	156593366	A	G	156593366	2	3	141	1	0	0	0	0	0	0	0	1	6955	202	7	2		2	HAPLN2	1	156593366	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	1654887	156593366	92657255	20	17864											
OR6K6	128371	ucsc.edu;bcgsc.ca	37	1	158724983	158724983	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR6K6	NM_001005184	exon1	c.C378A	p.L126L	CTGCCTCCTGCAG	.	41	4	33	0	.	69	A	158724983	C	A	158724983	2	1	141	1	0	0	0	0	0	0	0	1	11204	842	30	3		3	OR6K6	1	158724983	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	2131617	158724983	90525638	21	17865											
ANKRD45	339416	ucsc.edu;bcgsc.ca	37	1	173596300	173596300	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD45	NM_198493	exon5	c.497-2A>G	.	TGCATCTGAAAGA	.	33	4	33	0	.	90	C	173596300	T	C	173596300	5	2	141	1	0	0	0	0	0	0	1	0	673	1594	55	2	317	2	ANKRD45	1	173596300	Splice_Site	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	14871317	173596300	75654321	22	17866											
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175372511	175372511	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNR	NM_003285	exon4	c.C741T	p.D247D	CTCCCCGTCCACG	.	42	15	37	0	.	324	A	175372511	G	A	175372511	2	1	141	1	0	0	0	0	0	0	0	1	16335	1136	40	1		1	TNR	1	175372511	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1776211	175372511	73878110	23	17867											
IVNS1ABP	10625	ucsc.edu;bcgsc.ca	37	1	185274729	185274729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IVNS1ABP	NM_006469	exon8	c.A704G	p.N235S	AGTAGGTTCCCAT	.	28	4	25	0	.	94	C	185274729	T	C	185274729	3	2	141	1	0	0	0	0	1	0	0	0	7930	1725	60	2	1256	2	IVNS1ABP	1	185274729	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	9902218	185274729	63975892	24	17868											
CRB1	23418	ucsc.edu;bcgsc.ca	37	1	197390976	197390976	+	Missense_Mutation	SNP	A	A	G	rs145956521		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CRB1	NM_001257966	exon6	c.A2018G	p.K673R	TGAGAAAGGATTG	.	32	4	33	0	A|1.000;G|0.000	161	G	197390976	A	G	197390976	3	3	141	1	0	0	0	0	1	0	0	0	3848	72	3	2	2040	2	CRB1	1	197390976	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	12116247	197390976	51859645	25	17869											
KIF14	9928	ucsc.edu;bcgsc.ca	37	1	200544760	200544760	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF14	NM_014875	exon22	c.C3525A	p.P1175P	AATGTCGGGTTCC	.	33	4	26	0	.	140	T	200544760	G	T	200544760	2	4	141	1	0	0	0	0	0	0	0	1	8276	1103	39	1		1	KIF14	1	200544760	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	3153784	200544760	48705861	26	17870											
LGR6	59352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202287962	202287962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LGR6	NM_001017403	exon18	c.G2531A	p.R844H	GGCCCCGCGCAGG	.	39	13	47	0	.	160	A	202287962	G	A	202287962	3	1	141	1	0	0	0	0	1	0	0	0	8758	1087	38	1	2748	1	LGR6	1	202287962	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1743202	202287962	46962659	27	17871											
IKBKE	9641	ucsc.edu;bcgsc.ca	37	1	206647814	206647814	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IKBKE	NM_001193322	exon4	c.G228T	p.T76T	GGAGACGGTAGGT	.	38	4	31	0	.	1061	T	206647814	G	T	206647814	2	4	141	1	0	0	0	0	0	0	0	1	7612	1130	39	1		1	IKBKE	1	206647814	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	4359852	206647814	42602807	28	17872											
ABCB10	23456	ucsc.edu;bcgsc.ca	37	1	229666102	229666102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCB10	NM_012089	exon8	c.G1489A	p.V497M	AATGCACGTTCTT	.	49	5	58	0	.	153	T	229666102	C	T	229666102	3	4	141	1	0	0	0	0	1	0	0	0	41	536	19	1	751	1	ABCB10	1	229666102	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	23018288	229666102	19584519	29	17873											
PGBD5	79605	ucsc.edu;bcgsc.ca	37	1	230461062	230461062	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PGBD5	NM_001258311	exon6	c.A1373T	p.Y458F	TTGCTGTATTTGT	.	52	5	56	0	.	93	A	230461062	T	A	230461062	3	1	141	1	0	0	0	0	1	0	0	0	11784	1638	57	4	209	4	PGBD5	1	230461062	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	794960	230461062	18789559	30	17874											
PAX8	7849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113993092	113993092	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAX8	NM_003466	exon9	c.C966T	p.S322S	TAAAGAGGAAGGG	.	76	12	75	0	.	684	A	113993092	G	A	113993092	2	1	141	1	0	0	0	0	0	0	0	1	11485	987	35	3		3	PAX8	2	113993092	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10		113993092	129206281	31	17875											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160804063	160804063	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLA2R1	NM_001195641	exon26	c.A3717G	p.R1239R	AGATTGTCTTGTT	.	118	21	77	0	.	93	C	160804063	T	C	160804063	2	2	141	1	0	0	0	0	0	0	0	1	12010	1664	58	2		2	PLA2R1	2	160804063	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	46810971	160804063	82395310	32	17876											
SP5	389058	ucsc.edu;bcgsc.ca	37	2	171573770	171573770	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SP5	NM_001003845	exon2	c.G1053A	p.T351T	TCACACGGGCGAG	.	39	5	36	0	.	90	A	171573770	G	A	171573770	2	1	141	1	0	0	0	0	0	0	0	1	14967	1103	39	1		1	SP5	2	171573770	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	10769707	171573770	71625603	33	17877											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179430304	179430304	+	Missense_Mutation	SNP	C	C	T	rs202149931		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon326	c.G80555A	p.R26852H	TTGACACGGAACT	.	97	26	70	0	C|0.999;T|0.001	636	T	179430304	C	T	179430304	3	4	141	1	0	0	0	0	1	0	0	0	16732	536	19	1	27572	1	TTN	2	179430304	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	7856534	179430304	63769069	34	17878											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179610836	179610836	+	Missense_Mutation	SNP	C	C	T	rs141483365		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_133379	exon46	c.G16291A	p.E5431K	TCTCCTCGCTAAT	.	101	23	91	0	C|1.000;T|0.000	636	T	179610836	C	T	179610836	3	4	141	1	0	0	0	0	1	0	0	0	16732	893	31	1	94006	1	TTN	2	179610836	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	180532	179610836	63588537	35	17879											
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209198115	209198115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIKFYVE	NM_015040	exon24	c.G4040A	p.G1347E	TTTATGGGCACCA	.	65	6	45	0	.	583	A	209198115	G	A	209198115	3	1	141	1	0	0	0	0	1	0	0	0	11924	1232	43	3	4141	3	PIKFYVE	2	209198115	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	29587279	209198115	34001258	36	17880											
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209203240	209203240	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIKFYVE	NM_015040	exon29	c.G4620T	p.A1540A	AAGTGCGATGGAT	.	38	4	70	0	.	583	T	209203240	G	T	209203240	2	4	141	1	0	0	0	0	0	0	0	1	11924	1045	37	1		1	PIKFYVE	2	209203240	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	5125	209203240	33996133	37	17881											
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223066132	223066132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAX3	NM_181459	exon9	c.G1450A	p.A484T	CTTACGCGATATC	.	61	22	58	0	.	1821	T	223066132	C	T	223066132	3	4	141	1	0	0	0	0	1	0	0	0	11480	782	27	1	83	1	PAX3	2	223066132	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	13862892	223066132	20133241	38	17882											
CPNE9	151835	ucsc.edu;bcgsc.ca	37	3	9756640	9756640	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPNE9	NM_153635	exon10	c.692+1G>A	.	TGGAAGGTAGAAC	.	44	4	49	0	.	70	A	9756640	G	A	9756640	5	1	141	1	0	0	0	0	0	0	1	0	3819	1275	44	3	731	3	CPNE9	3	9756640	Splice_Site	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10		9756640	188265790	39	17883											
PLCL2	23228	ucsc.edu;bcgsc.ca	37	3	17053597	17053597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLCL2	NM_015184	exon2	c.T2381A	p.F794Y	AGGTATTCAAGAA	.	39	4	56	0	.	229	A	17053597	T	A	17053597	3	1	141	1	0	0	0	0	1	0	0	0	12040	1783	62	4	2759	4	PLCL2	3	17053597	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	7296957	17053597	180968833	40	17884											
EXOG	9941	ucsc.edu;bcgsc.ca	37	3	38565778	38565778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EXOG	NM_005107	exon6	c.G1032T	p.M344I	CTTTATGAGTCGC	.	47	4	59	0	.	90	T	38565778	G	T	38565778	3	4	141	1	0	0	0	0	1	0	0	0	5312	1290	45	3	1054	3	EXOG	3	38565778	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	21512181	38565778	159456652	41	17885											
ZNF445	353274	ucsc.edu;bcgsc.ca	37	3	44492406	44492406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF445	NM_181489	exon5	c.C647A	p.P216Q	TCTCCCGGGCACC	.	37	4	41	0	.	91	T	44492406	G	T	44492406	3	4	141	1	0	0	0	0	1	0	0	0	17915	1116	39	1	2464	1	ZNF445	3	44492406	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	5926628	44492406	153530024	42	17886											
ZNF502	91392	ucsc.edu;bcgsc.ca	37	3	44763562	44763562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF502	NM_001134440	exon4	c.A1253G	p.Q418R	TCATTCAGAGCAT	.	36	4	34	0	.	90	G	44763562	A	G	44763562	3	3	141	1	0	0	0	0	1	0	0	0	17947	188	7	2	1259	2	ZNF502	3	44763562	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	271156	44763562	153258868	43	17887											
KIF15	56992	ucsc.edu;bcgsc.ca	37	3	44884683	44884683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF15	NM_020242	exon30	c.C3652A	p.L1218M	TGGCTCCTGCAAG	.	39	4	52	0	.	91	A	44884683	C	A	44884683	3	1	141	1	0	0	0	0	1	0	0	0	8277	680	24	3	3770	3	KIF15	3	44884683	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	121121	44884683	153137747	44	17888											
ZDHHC3	51304	ucsc.edu;bcgsc.ca	37	3	44986740	44986740	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZDHHC3	NM_016598	exon3	c.T351C	p.S117S	CTGTAAACTCTCG	.	42	5	105	0	.	90	G	44986740	A	G	44986740	2	3	141	1	0	0	0	0	0	0	0	1	17613	40	2	2		2	ZDHHC3	3	44986740	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	102057	44986740	153035690	45	17889											
IMPDH2	3615	ucsc.edu;bcgsc.ca	37	3	49064263	49064263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IMPDH2,NS,carcinoma,0	IMPDH2	NM_000884	exon7	c.G676T	p.D226Y	TCAGGTCTGTCCG	.	55	5	52	0	.	227	A	49064263	C	A	49064263	3	1	141	1	0	0	0	0	1	0	0	0	7727	913	32	3	900	3	IMPDH2	3	49064263	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	4077523	49064263	148958167	46	17890											
APEH	327	ucsc.edu;bcgsc.ca	37	3	49713561	49713561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	APEH	NM_001640	exon6	c.A515G	p.K172R	GCCCCAAGGCCGA	.	25	4	41	0	.	91	G	49713561	A	G	49713561	3	3	141	1	0	0	0	0	1	0	0	0	768	72	3	2	537	2	APEH	3	49713561	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	649298	49713561	148308869	47	17891											
CACNA2D2	9254	ucsc.edu;bcgsc.ca	37	3	50421651	50421651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA2D2	NM_001174051	exon6	c.A628G	p.I210V	TAGGGATCTGTAC	.	50	5	95	0	.	278	C	50421651	T	C	50421651	3	2	141	1	0	0	0	0	1	0	0	0	2549	1435	50	2	2966	2	CACNA2D2	3	50421651	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	708090	50421651	147600779	48	17892											
DOCK3	1795	ucsc.edu;bcgsc.ca	37	3	51395251	51395251	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK3	NM_004947	exon45	c.C4746A	p.L1582L	CCAGCTCAAGGAG	.	34	4	36	0	.	22	A	51395251	C	A	51395251	2	1	141	1	0	0	0	0	0	0	0	1	4688	813	29	3		3	DOCK3	3	51395251	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	973600	51395251	146627179	49	17893											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52439874	52439874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAP1	NM_004656	exon10	c.C838T	p.Q280X	GCAGCTGTGACTC	.	28	19	39	0	.	1032	A	52439874	G	A	52439874	4	1	141	1	0	0	0	0	0	1	0	0	1311	1386	48	3	1383	3	BAP1	3	52439874	Nonsense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1044623	52439874	145582556	50	17894											
NISCH	11188	ucsc.edu;bcgsc.ca	37	3	52525524	52525524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NISCH	NM_007184	exon20	c.C3899T	p.T1300I	ACAAGACCACAGG	.	34	4	45	0	.	93	T	52525524	C	T	52525524	3	4	141	1	0	0	0	0	1	0	0	0	10432	507	18	3	3977	3	NISCH	3	52525524	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	85650	52525524	145496906	51	17895											
ACOX2	8309	ucsc.edu;bcgsc.ca	37	3	58494706	58494706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACOX2	NM_003500	exon14	c.T1897C	p.C633R	TTAAACACTGATC	.	41	4	50	0	.	90	G	58494706	A	G	58494706	3	3	141	1	0	0	0	0	1	0	0	0	159	159	6	2	156	2	ACOX2	3	58494706	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	5969182	58494706	139527724	52	17896											
COL8A1	1295	ucsc.edu;bcgsc.ca	37	3	99514406	99514406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL8A1	NM_001850	exon5	c.G1661T	p.G554V	CTCAAGGCCAGCC	.	24	4	31	0	.	90	T	99514406	G	T	99514406	3	4	141	1	0	0	0	0	1	0	0	0	3705	1203	42	3	1667	3	COL8A1	3	99514406	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	41019700	99514406	98508024	53	17897											
RETNLB	84666	ucsc.edu;bcgsc.ca	37	3	108476030	108476030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RETNLB	NM_032579	exon1	c.G3T	p.M1I	CGGCCCCATCCTG	.	50	4	53	0	.	91	A	108476030	C	A	108476030	3	1	141	1	0	0	0	0	1	0	0	0	13237	594	21	3	344	3	RETNLB	3	108476030	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	8961624	108476030	89546400	54	17898											
CD96	10225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111319663	111319663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD96	NM_198196	exon8	c.C1037G	p.A346G	AACCAGCCCAATC	.	64	35	79	0	.	93	G	111319663	C	G	111319663	3	3	141	1	0	0	0	0	1	0	0	0	3048	739	26	4	1067	4	CD96	3	111319663	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	2843633	111319663	86702767	55	17899											
PHLDB2	90102	ucsc.edu;bcgsc.ca	37	3	111671497	111671497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHLDB2	NM_001134439	exon11	c.A2710G	p.T904A	AAGAAAACCACAT	.	39	4	56	0	.	96	G	111671497	A	G	111671497	3	3	141	1	0	0	0	0	1	0	0	0	11852	43	2	2	2833	2	PHLDB2	3	111671497	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	351834	111671497	86350933	56	17900											
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu	37	3	129389772	129389772	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.912delG	p.R304fs	GAGCTTCCTGTGG	.	141	11	155	0	.	91	-	129389772	C	-	129389772	7	5	141	1	0	1	0	1	0	0	0	0	15989	854	30	0	1061	0	TMCC1	3	129389772	Frame_Shift_Del	DEL	C	TCGA-G3-A25T-01A-11D-A16V-10	17718275	129389772	68632658	57	17901	98	2									
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	129389775	129389787	+	Frame_Shift_Del	DEL	GTGGTAGTGCTCA	GTGGTAGTGCTCA	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	GTGGTAGTGCTCA	GTGGTAGTGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.897_909del	p.299_303del	CTTCCTGTGGTAG	.	138	11	156	0	.	91	-	129389787	GTGGTAGTGCTCA	-	129389775	7	5	141	1	0	1	0	1	0	0	0	0	15989	1368	48	0	1064	0	TMCC1	3	129389775	Frame_Shift_Del	DEL	GTGGTAGTGCTCA	TCGA-G3-A25T-01A-11D-A16V-10	3	129389775	68632655	58	17902	98	2									
MRAS	22808	ucsc.edu;bcgsc.ca	37	3	138117409	138117409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRAS	NM_012219	exon4	c.A446G	p.N149S	AACACAATGTAGG	.	29	4	46	0	.	848	G	138117409	A	G	138117409	3	3	141	1	0	0	0	0	1	0	0	0	9755	115	4	2	456	2	MRAS	3	138117409	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	8727634	138117409	59905021	59	17903											
SLITRK3	22865	ucsc.edu;bcgsc.ca	37	3	164906098	164906098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLITRK3	NM_014926	exon2	c.C2521A	p.P841T	CTGCTGGGTGGTG	.	46	4	37	0	.	100	T	164906098	G	T	164906098	3	4	141	1	0	0	0	0	1	0	0	0	14744	1232	43	3	416	3	SLITRK3	3	164906098	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	26788689	164906098	33116332	60	17904											
SLITRK3	22865	ucsc.edu;bcgsc.ca	37	3	164908427	164908427	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLITRK3	NM_014926	exon2	c.A192G	p.K64K	AAATCCTTTACTG	.	52	6	51	0	.	100	C	164908427	T	C	164908427	2	2	141	1	0	0	0	0	0	0	0	1	14744	1606	56	2		2	SLITRK3	3	164908427	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	2329	164908427	33114003	61	17905											
MAGEF1	64110	ucsc.edu;bcgsc.ca	37	3	184429305	184429305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAGEF1	NM_022149	exon1	c.T305C	p.M102T	TTCACCATCTCCG	.	35	4	42	0	.	91	G	184429305	A	G	184429305	3	3	141	1	0	0	0	0	1	0	0	0	9187	217	8	2	622	2	MAGEF1	3	184429305	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	19520878	184429305	13593125	62	17906											
EVC2	132884	ucsc.edu;bcgsc.ca	37	4	5620323	5620323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EVC2	NM_147127	exon15	c.A2588G	p.D863G	CTCCTGTCCATCT	.	38	4	52	0	.	155	C	5620323	T	C	5620323	3	2	141	1	0	0	0	0	1	0	0	0	5286	1667	58	2	1370	2	EVC2	4	5620323	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		5620323	185533953	63	17907											
SLIT2	9353	ucsc.edu;bcgsc.ca	37	4	20611768	20611768	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLIT2	NM_004787	exon34	c.T3825C	p.F1275F	GAATTTTGACTCT	.	43	4	48	0	.	521	C	20611768	T	C	20611768	2	2	141	1	0	0	0	0	0	0	0	1	14740	1809	63	2		2	SLIT2	4	20611768	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	14991445	20611768	170542508	64	17908											
PAICS	10606	ucsc.edu;bcgsc.ca	37	4	57302496	57302496	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAICS	NM_006452	exon2	c.16+2T>C	.	TGAGGGTGAGTAA	.	38	4	58	0	.	68	C	57302496	T	C	57302496	5	2	141	1	0	0	0	0	0	0	1	0	11395	1710	59	2	20	2	PAICS	4	57302496	Splice_Site	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	36690728	57302496	133851780	65	17909											
DCK	1633	ucsc.edu;bcgsc.ca	37	4	71888086	71888086	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCK	NM_000788	exon3	c.A210G	p.E70E	ATAGGAACTTACA	.	39	4	63	0	.	116	G	71888086	A	G	71888086	2	3	141	1	0	0	0	0	0	0	0	1	4290	40	2	2		2	DCK	4	71888086	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	14585590	71888086	119266190	66	17910											
PAQR3	152559	ucsc.edu;bcgsc.ca	37	4	79856387	79856387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAQR3	NM_001040202	exon2	c.G236T	p.G79V	AAGAAACCCAGCA	.	28	4	32	0	.	46	A	79856387	C	A	79856387	3	1	141	1	0	0	0	0	1	0	0	0	11436	507	18	3	719	3	PAQR3	4	79856387	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	7968301	79856387	111297889	67	17911											
NFKB1	4790	ucsc.edu;bcgsc.ca	37	4	103533727	103533727	+	Silent	SNP	T	T	C	rs147169338	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NFKB1	NM_003998	exon22	c.T2556C	p.S852S	GCTGAGTCCTGCT	.	34	4	25	0	T|1.000;G|0.000	912	C	103533727	T	C	103533727	2	2	141	1	0	0	0	0	0	0	0	1	10375	1664	58	2		2	NFKB1	4	103533727	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	23677340	103533727	87620549	68	17912											
CCDC109B	55013	ucsc.edu;bcgsc.ca	37	4	110581513	110581513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC109B	NM_017918	exon3	c.T338C	p.F113S	CCATCTTCACAGC	.	41	4	58	0	.	90	C	110581513	T	C	110581513	3	2	141	1	0	0	0	0	1	0	0	0	2745	1783	62	2	348	2	CCDC109B	4	110581513	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	7047786	110581513	80572763	69	17913											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123238013	123238013	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1109	NM_015312	exon60	c.C10666T	p.L3556L	GATGATCTGAAGT	.	77	16	129	0	.	80	T	123238013	C	T	123238013	2	4	141	1	0	0	0	0	0	0	0	1	8208	912	32	3		3	KIAA1109	4	123238013	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	12656500	123238013	67916263	70	17914											
INTU	27152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128590302	128590302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INTU	NM_015693	exon5	c.G1084A	p.V362I	ACACAAGTTACTA	.	44	8	50	0	.	91	A	128590302	G	A	128590302	3	1	141	1	0	0	0	0	1	0	0	0	7786	1029	36	3	1102	3	INTU	4	128590302	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	5352289	128590302	62563974	71	17915											
LRBA	987	ucsc.edu;bcgsc.ca	37	4	151408925	151408925	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRBA	NM_006726	exon43	c.T6543C	p.P2181P	AACACGAGGTAGA	.	51	4	54	0	.	157	G	151408925	A	G	151408925	2	3	141	1	0	0	0	0	0	0	0	1	8931	291	11	2		2	LRBA	4	151408925	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	22818623	151408925	39745351	72	17916											
LRAT	9227	ucsc.edu;bcgsc.ca	37	4	155665881	155665881	+	Missense_Mutation	SNP	G	G	A	rs139819099	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRAT	NM_004744	exon2	c.G403A	p.A135T	AAAAAGGCACTGC	.	42	4	33	0	G|0.999;T|0.001	90	A	155665881	G	A	155665881	3	1	141	1	0	0	0	0	1	0	0	0	8930	1203	42	3	405	3	LRAT	4	155665881	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	4256956	155665881	35488395	73	17917											
SNX18	112574	ucsc.edu;bcgsc.ca	37	5	53814671	53814671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNX18	NM_052870	exon1	c.T889C	p.S297P	TACATCTCCTACA	.	40	4	47	0	.	226	C	53814671	T	C	53814671	3	2	141	1	0	0	0	0	1	0	0	0	14889	1551	54	2	891	2	SNX18	5	53814671	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		53814671	127100589	74	17918											
VCAN	1462	ucsc.edu;bcgsc.ca	37	5	82817434	82817434	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VCAN	NM_004385	exon7	c.T3309C	p.S1103S	TGTGTCTTATCCA	.	46	4	39	0	.	238	C	82817434	T	C	82817434	2	2	141	1	0	0	0	0	0	0	0	1	17135	1596	56	2		2	VCAN	5	82817434	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	29002763	82817434	98097826	75	17919											
PCDHB15	56121	ucsc.edu;bcgsc.ca	37	5	140627378	140627378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHB15	NM_018935	exon1	c.C2232T	p.T744T	CGGGACCCTTTCC	.	49	5	56	0	.	156	T	140627378	C	T	140627378	2	4	141	1	0	0	0	0	0	0	0	1	11540	610	22	3		3	PCDHB15	5	140627378	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	57809944	140627378	40287882	76	17920											
HTR4	3360	ucsc.edu;bcgsc.ca	37	5	147889387	147889387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HTR4	NM_001040169	exon5	c.C708A	p.S236S	GCTCTCGGAGGAG	.	43	4	45	0	.	91	T	147889387	G	T	147889387	2	4	141	1	0	0	0	0	0	0	0	1	7449	1103	39	1		1	HTR4	5	147889387	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	7262009	147889387	33025873	77	17921											
HIVEP1	3096	ucsc.edu;bcgsc.ca	37	6	12124295	12124295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIVEP1	NM_002114	exon4	c.G4267A	p.E1423K	CTCTTAGAAAGAA	.	30	4	38	0	.	139	A	12124295	G	A	12124295	3	1	141	1	0	0	0	0	1	0	0	0	7186	943	33	3	4277	3	HIVEP1	6	12124295	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10		12124295	158990772	78	17922											
GABBR1	2550	ucsc.edu;bcgsc.ca	37	6	29576390	29576390	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABBR1	NM_001470	exon16	c.T1980C	p.P660P	GACGAAAGGAAAC	.	39	4	41	0	.	521	G	29576390	A	G	29576390	2	3	141	1	0	0	0	0	0	0	0	1	6155	59	3	2		2	GABBR1	6	29576390	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	17452095	29576390	141538677	79	17923											
MAPK13	5603	ucsc.edu;bcgsc.ca	37	6	36100412	36100412	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPK13	NM_002754	exon3	c.G264A	p.L88L	GCTCCTGGATGTC	.	42	4	58	0	.	1521	A	36100412	G	A	36100412	2	1	141	1	0	0	0	0	0	0	0	1	9275	1335	47	3		3	MAPK13	6	36100412	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	6524022	36100412	135014655	80	17924											
TRERF1	55809	ucsc.edu;bcgsc.ca	37	6	42237051	42237051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRERF1	NM_033502	exon5	c.A278G	p.N93S	ACATGGTTTCCAG	.	22	4	25	0	.	230	C	42237051	T	C	42237051	3	2	141	1	0	0	0	0	1	0	0	0	16472	1725	60	2	3380	2	TRERF1	6	42237051	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	6136639	42237051	128878016	81	17925											
CUL7	9820	ucsc.edu;bcgsc.ca	37	6	43016296	43016296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL7	NM_001168370	exon8	c.C2089A	p.P697T	GAGATGGGGGTTC	.	39	4	50	0	.	229	T	43016296	G	T	43016296	3	4	141	1	0	0	0	0	1	0	0	0	4060	1232	43	3	3335	3	CUL7	6	43016296	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	779245	43016296	128098771	82	17926											
CUL9	23113	ucsc.edu;bcgsc.ca	37	6	43174080	43174080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL9	NM_015089	exon26	c.G5044T	p.A1682S	GAGGAAGCTGAGA	.	34	4	24	0	.	529	T	43174080	G	T	43174080	3	4	141	1	0	0	0	0	1	0	0	0	4061	971	34	3	5142	3	CUL9	6	43174080	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	157784	43174080	127940987	83	17927											
OGFRL1	79627	ucsc.edu;bcgsc.ca	37	6	72011093	72011093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OGFRL1	NM_024576	exon7	c.C697A	p.Q233K	AGGTCCCAGCACA	.	36	5	41	0	.	68	A	72011093	C	A	72011093	3	1	141	1	0	0	0	0	1	0	0	0	10844	595	21	3	723	3	OGFRL1	6	72011093	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	28837013	72011093	99103974	84	17928											
RIMS1	22999	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	72892264	72892264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RIMS1	NM_014989	exon6	c.T1090G	p.Y364D	GCTCGGTACCCGG	.	45	20	121	1	.	144	G	72892264	T	G	72892264	3	3	141	1	0	0	0	0	1	0	0	0	13367	1638	57	5	1112	5	RIMS1	6	72892264	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	881171	72892264	98222803	85	17929											
MDN1	23195	ucsc.edu;bcgsc.ca	37	6	90353833	90353833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MDN1	NM_014611	exon102	c.T16682C	p.F5561S	AATGGGAACTCTT	.	54	5	104	0	.	100	G	90353833	A	G	90353833	3	3	141	1	0	0	0	0	1	0	0	0	9415	246	9	2	112	2	MDN1	6	90353833	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	17461569	90353833	80761234	86	17930											
EPHA7	2045	ucsc.edu;bcgsc.ca	37	6	93973601	93973601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHA7	NM_004440	exon9	c.G1775A	p.G592D	TCATCGCCTTCTT	.	14	4	21	0	.	1453	T	93973601	C	T	93973601	3	4	141	1	0	0	0	0	1	0	0	0	5172	739	26	3	1257	3	EPHA7	6	93973601	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	3619768	93973601	77141466	87	17931											
QRSL1	55278	ucsc.edu;bcgsc.ca	37	6	107113739	107113739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	QRSL1	NM_018292	exon11	c.T1449C	p.C483C	GTTTTGTGACCAG	.	39	4	67	0	.	90	C	107113739	T	C	107113739	2	2	141	1	0	0	0	0	0	0	0	1	12881	1702	59	2		2	QRSL1	6	107113739	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	13140138	107113739	64001328	88	17932											
CDC40	51362	ucsc.edu;bcgsc.ca	37	6	110551184	110551184	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDC40	NM_015891	exon15	c.A1590G	p.G530G	AAATGGAAAATTA	.	43	4	77	0	.	90	G	110551184	A	G	110551184	2	3	141	1	0	0	0	0	0	0	0	1	3070	233	9	2		2	CDC40	6	110551184	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	3437445	110551184	60563883	89	17933											
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111696640	111696640	+	Missense_Mutation	SNP	G	G	T	rs183900471	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	REV3L	NM_002912	exon13	c.C2918A	p.P973H	ATGACAGGGGGCA	.	41	5	45	0	G|0.999;A|0.000	294	T	111696640	G	T	111696640	3	4	141	1	0	0	0	0	1	0	0	0	13240	1000	35	3	6554	3	REV3L	6	111696640	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1145456	111696640	59418427	90	17934											
THEMIS	387357	ucsc.edu;bcgsc.ca	37	6	128134525	128134525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THEMIS	NM_001010923	exon4	c.T1261C	p.Y421H	CCTCATAGGACTT	.	31	4	48	0	.	94	G	128134525	A	G	128134525	3	3	141	1	0	0	0	0	1	0	0	0	15857	420	15	2	797	2	THEMIS	6	128134525	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	16437885	128134525	42980542	91	17935											
VNN2	8875	ucsc.edu;bcgsc.ca	37	6	133078849	133078849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VNN2	NM_004665	exon1	c.A174G	p.I58M	AATGTCTATATTC	.	44	4	71	0	.	90	C	133078849	T	C	133078849	3	2	141	1	0	0	0	0	1	0	0	0	17180	1512	53	2	1416	2	VNN2	6	133078849	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	4944324	133078849	38036218	92	17936											
MTHFD1L	25902	ucsc.edu;bcgsc.ca	37	6	151258025	151258025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTHFD1L	NM_001242767	exon12	c.T1345C	p.S449P	GTCAACTCCTTTG	.	20	5	25	0	.	292	C	151258025	T	C	151258025	3	2	141	1	0	0	0	0	1	0	0	0	9928	1551	54	2	1388	2	MTHFD1L	6	151258025	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	18179176	151258025	19857042	93	17937											
FOXK1	221937	ucsc.edu;bcgsc.ca	37	7	4798690	4798690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FOXK1	NM_001037165	exon6	c.C1253T	p.P418L	GCGCTCCAGCTTC	.	33	4	38	0	.	516	T	4798690	C	T	4798690	3	4	141	1	0	0	0	0	1	0	0	0	6014	594	21	3	1275	3	FOXK1	7	4798690	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10		4798690	154339973	94	17938											
LAMB4	22798	ucsc.edu;bcgsc.ca	37	7	107696361	107696361	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMB4	NM_007356	exon25	c.A3471G	p.R1157R	ATCACATCTCTGG	.	53	6	65	0	.	140	C	107696361	T	C	107696361	2	2	141	1	0	0	0	0	0	0	0	1	8613	1432	50	2		2	LAMB4	7	107696361	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	102897671	107696361	51442302	95	17939											
TAS2R16	50833	ucsc.edu;bcgsc.ca	37	7	122634852	122634852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAS2R16	NM_016945	exon1	c.C837A	p.S279R	AGGGCTGCTCAGC	.	43	4	31	0	.	92	T	122634852	G	T	122634852	3	4	141	1	0	0	0	0	1	0	0	0	15566	1310	46	3	42	3	TAS2R16	7	122634852	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	14938491	122634852	36503811	96	17940											
CCDC136	64753	ucsc.edu;bcgsc.ca	37	7	128454946	128454946	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC136	NM_022742	exon15	c.T3018C	p.T1006T	GGATACTTCTGAG	.	41	4	32	0	.	24	C	128454946	T	C	128454946	2	2	141	1	0	0	0	0	0	0	0	1	2770	1596	56	2		2	CCDC136	7	128454946	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	5820094	128454946	30683717	97	17941											
SLC25A37	51312	ucsc.edu;bcgsc.ca	37	8	23425873	23425873	+	Missense_Mutation	SNP	G	G	A	rs147621958		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC25A37	NM_016612	exon3	c.G478A	p.V160I	GATGCGGTAATGA	.	41	4	40	0	G|0.999;A|0.000	90	A	23425873	G	A	23425873	3	1	141	1	0	0	0	0	1	0	0	0	14501	1261	44	3	488	3	SLC25A37	8	23425873	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10		23425873	122938149	98	17942											
AGPAT6	137964	ucsc.edu;bcgsc.ca	37	8	41469488	41469488	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGPAT6	NM_178819	exon6	c.A678G	p.T226T	GCTGACAGCCATC	.	41	4	41	0	.	90	G	41469488	A	G	41469488	2	3	141	1	0	0	0	0	0	0	0	1	391	175	7	2		2	AGPAT6	8	41469488	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	18043615	41469488	104894534	99	17943											
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48614552	48614552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA0146	NM_001080394	exon14	c.C1952G	p.A651G	TCTATGCCACGGT	.	126	59	121	0	.	68	G	48614552	C	G	48614552	3	3	141	1	0	0	0	0	1	0	0	0	8157	739	26	4	2006	4	KIAA0146	8	48614552	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	7145064	48614552	97749470	100	17944											
PSKH2	85481	broad.mit.edu;bcgsc.ca	37	8	87076798	87076798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PSKH2	NM_033126	exon2	c.A248G	p.K83R	GTGGTCTTCTGCT	.	109	7	129	0	.	385	C	87076798	T	C	87076798	3	2	141	1	0	0	0	0	1	0	0	0	12665	1609	56	2	915	2	PSKH2	8	87076798	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	38462246	87076798	59287224	101	17945											
MATN2	4147	ucsc.edu;bcgsc.ca	37	8	98973649	98973649	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MATN2	NM_002380	exon5	c.T849C	p.C283C	TCTGTGTGCCATG	.	48	4	34	0	.	24	C	98973649	T	C	98973649	2	2	141	1	0	0	0	0	0	0	0	1	9334	1702	59	2		2	MATN2	8	98973649	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	11896851	98973649	47390373	102	17946											
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	C	T	rs141202988		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	SLC30A8,NS,carcinoma,0	SLC30A8	NM_173851	exon4	c.C560T	p.A187V	CAGTGGCGGCCAA	.	101	65	88	0	C|1.000;T|0.000	229	T	118170071	C	T	118170071	3	4	141	1	0	0	0	0	1	0	0	0	14561	768	27	1	574	1	SLC30A8	8	118170071	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	19196422	118170071	28193951	103	17947											
ABCA1	19	ucsc.edu;bcgsc.ca	37	9	107576476	107576476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA1	NM_005502	exon27	c.T3824C	p.F1275S	TCCCCGAAGGCCC	.	20	4	31	0	.	1016	G	107576476	A	G	107576476	3	3	141	1	0	0	0	0	1	0	0	0	28	246	9	2	3057	2	ABCA1	9	107576476	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10		107576476	33636955	104	17948											
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109690181	109690181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon3	c.C3988G	p.H1330D	CTCCTGCATTACC	.	42	4	54	0	.	95	G	109690181	C	G	109690181	3	3	141	1	0	0	0	0	1	0	0	0	17923	710	25	4	3994	4	ZNF462	9	109690181	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	2113705	109690181	31523250	105	17949											
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109734383	109734383	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon8	c.T6525C	p.P2175P	TGTGCCTCTTTCT	.	40	5	57	0	.	95	C	109734383	T	C	109734383	2	2	141	1	0	0	0	0	0	0	0	1	17923	1538	54	2		2	ZNF462	9	109734383	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	44202	109734383	31479048	106	17950											
IKBKAP	8518	ucsc.edu;bcgsc.ca	37	9	111665218	111665218	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IKBKAP	NM_003640	exon16	c.A1755G	p.S585S	AGAAGGTGACTCT	.	30	4	35	0	.	318	C	111665218	T	C	111665218	2	2	141	1	0	0	0	0	0	0	0	1	7610	1683	59	2		2	IKBKAP	9	111665218	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	1930835	111665218	29548213	107	17951											
AKNA	80709	ucsc.edu;bcgsc.ca	37	9	117113246	117113246	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKNA	NM_030767	exon15	c.C3114T	p.P1038P	CTTGTTGGGAAGG	.	34	4	67	0	.	94	A	117113246	G	A	117113246	2	1	141	1	0	0	0	0	0	0	0	1	463	1335	47	3		3	AKNA	9	117113246	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	5448028	117113246	24100185	108	17952											
PAPPA	5069	ucsc.edu;bcgsc.ca	37	9	119116037	119116037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAPPA	NM_002581	exon17	c.T4312C	p.C1438R	AGTGAGTGTAGGA	.	45	4	86	0	.	77	C	119116037	T	C	119116037	3	2	141	1	0	0	0	0	1	0	0	0	11432	1696	59	2	4378	2	PAPPA	9	119116037	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	2002791	119116037	22097394	109	17953											
LRRC8A	56262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131678510	131678510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC8A	NM_001127244	exon4	c.C2293T	p.R765W	GGCAACCGGCTGG	.	20	7	30	0	.	90	T	131678510	C	T	131678510	3	4	141	1	0	0	0	0	1	0	0	0	9021	643	23	1	2299	1	LRRC8A	9	131678510	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	12562473	131678510	9534921	110	17954											
FIBCD1	84929	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133787241	133787241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FIBCD1	NM_001145106	exon6	c.T884C	p.F295S	CGGAAGAAGTTCA	.	24	11	38	0	.	90	G	133787241	A	G	133787241	3	3	141	1	0	0	0	0	1	0	0	0	5884	246	9	2	513	2	FIBCD1	9	133787241	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	2108731	133787241	7426190	111	17955											
LAMC3	10319	ucsc.edu;bcgsc.ca	37	9	133963173	133963173	+	Silent	SNP	C	C	A	rs200452667	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMC3	NM_006059	exon27	c.C4446A	p.I1482I	GGACATCGAGACC	.	26	4	27	0	C|0.999;T|0.001	93	A	133963173	C	A	133963173	2	1	141	1	0	0	0	0	0	0	0	1	8616	874	31	1		1	LAMC3	9	133963173	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	175932	133963173	7250258	112	17956											
MED27	9442	ucsc.edu;bcgsc.ca	37	9	134955144	134955144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED27	NM_001253881	exon1	c.A88G	p.R30G	ACACCCTGCTCAC	.	48	4	58	0	.	69	C	134955144	T	C	134955144	3	2	141	1	0	0	0	0	1	0	0	0	9445	1579	55	2	879	2	MED27	9	134955144	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	991971	134955144	6258287	113	17957											
GTF3C4	9329	ucsc.edu;bcgsc.ca	37	9	135553517	135553517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTF3C4	NM_012204	exon2	c.C511A	p.P171T	TGGTCTCCCATGG	.	31	4	34	0	.	91	A	135553517	C	A	135553517	3	1	141	1	0	0	0	0	1	0	0	0	6875	855	30	3	517	3	GTF3C4	9	135553517	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	598373	135553517	5659914	114	17958											
NUDT5	11164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12221083	12221083	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NUDT5	NM_014142	exon4	c.T180C	p.D60D	CCTACCATCCGCA	.	80	35	90	1	.	92	G	12221083	A	G	12221083	2	3	141	1	0	0	0	0	0	0	0	1	10742	231	8	2		2	NUDT5	10	12221083	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10		12221083	123313664	115	17959											
SPOCK2	9806	ucsc.edu;bcgsc.ca	37	10	73831975	73831975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPOCK2	NM_014767	exon5	c.A286T	p.S96C	GGCGGCTGCACTT	.	45	5	64	1	.	90	A	73831975	T	A	73831975	3	1	141	1	0	0	0	0	1	0	0	0	15079	1580	55	4	1020	4	SPOCK2	10	73831975	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	61610892	73831975	61702772	116	17960											
ZNF503	84858	broad.mit.edu;bcgsc.ca	37	10	77159617	77159617	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF503	NM_032772	exon2	c.G831A	p.T277T	CAGCCCCGTGGGT	.	31	4	66	0	.	91	T	77159617	C	T	77159617	2	4	141	1	0	0	0	0	0	0	0	1	17948	639	23	1		1	ZNF503	10	77159617	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	3327642	77159617	58375130	117	17961											
LDB3	11155	ucsc.edu;bcgsc.ca	37	10	88478562	88478562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LDB3	NM_001171610	exon12	c.A1951G	p.S651G	GGGAACAGCCTCT	.	30	4	44	0	.	92	G	88478562	A	G	88478562	3	3	141	1	0	0	0	0	1	0	0	0	8697	188	7	2	2314	2	LDB3	10	88478562	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	11318945	88478562	47056185	118	17962											
LIPA	3988	ucsc.edu;bcgsc.ca	37	10	90988121	90988121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIPA	NM_000235	exon4	c.G264T	p.L88F	TGCCAGCAAGCCA	.	40	4	42	0	.	90	A	90988121	C	A	90988121	3	1	141	1	0	0	0	0	1	0	0	0	8819	709	25	3	963	3	LIPA	10	90988121	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	2509559	90988121	44546626	119	17963											
C10orf129	142827	ucsc.edu;bcgsc.ca	37	10	96967135	96967135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C10orf129	NM_207321	exon4	c.A574G	p.S192G	GATAAGAGCTATG	.	37	4	40	0	.	90	G	96967135	A	G	96967135	3	3	141	1	0	0	0	0	1	0	0	0	1593	304	11	2	584	2	C10orf129	10	96967135	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	5979014	96967135	38567612	120	17964											
MMS19	64210	ucsc.edu;bcgsc.ca	37	10	99238131	99238131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_022362	exon4	c.T278C	p.L93P	TAGAACAGTATCA	.	26	5	30	0	.	.	G	99238131	A	G	99238131	3	3	141	1	0	0	0	0	1	0	0	0	9672	188	7	2	2926	2	MMS19	10	99238131	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	2270996	99238131	36296616	121	17965											
NRAP	4892	ucsc.edu;bcgsc.ca	37	10	115417257	115417257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NRAP	NM_001261463	exon4	c.C332A	p.A111E	TTAGGTGCACCTT	.	37	4	39	0	.	522	T	115417257	G	T	115417257	3	4	141	1	0	0	0	0	1	0	0	0	10638	1319	46	3	5016	3	NRAP	10	115417257	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	16179126	115417257	20117490	122	17966											
FAM160B1	57700	ucsc.edu;bcgsc.ca	37	10	116593104	116593104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM160B1	NM_020940	exon3	c.G237A	p.M79I	ATGTATGGAATAT	.	41	4	50	0	.	91	A	116593104	G	A	116593104	3	1	141	1	0	0	0	0	1	0	0	0	5470	1348	47	3	247	3	FAM160B1	10	116593104	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1175847	116593104	18941643	123	17967											
CPXM2	119587	ucsc.edu;bcgsc.ca	37	10	125601903	125601903	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPXM2	NM_198148	exon4	c.C615T	p.F205F	ACCAGTGAATCTG	.	45	4	51	0	.	92	A	125601903	G	A	125601903	2	1	141	1	0	0	0	0	0	0	0	1	3838	1281	45	3		3	CPXM2	10	125601903	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	9008799	125601903	9932844	124	17968											
MUC2	4583	ucsc.edu;bcgsc.ca	37	11	1087497	1087497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC2	NM_002457	exon24	c.A3248G	p.D1083G	CCTGTGACACGGG	.	38	4	57	1	.	90	G	1087497	A	G	1087497	3	3	141	1	0	0	0	0	1	0	0	0	9975	275	10	2	3342	2	MUC2	11	1087497	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10		1087497	133919019	125	17969											
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6579218	6579218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNHD1	NM_144666	exon25	c.A8693G	p.H2898R	GGCGCCACACTGC	.	53	4	58	0	.	24	G	6579218	A	G	6579218	3	3	141	1	0	0	0	0	1	0	0	0	4668	159	6	2	8792	2	DNHD1	11	6579218	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	5491721	6579218	128427298	126	17970											
ARNTL	406	ucsc.edu;bcgsc.ca	37	11	13408275	13408275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARNTL	NM_001030272	exon19	c.A1850G	p.D617G	CTGTTGACTTTAG	.	62	6	50	0	.	90	G	13408275	A	G	13408275	3	3	141	1	0	0	0	0	1	0	0	0	967	275	10	2	1927	2	ARNTL	11	13408275	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	6829057	13408275	121598241	127	17971											
EIF3M	10480	ucsc.edu;bcgsc.ca	37	11	32610277	32610277	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF3M	NM_006360	exon3	c.T313C	p.L105L	CTGCAGTTGTAAG	.	40	4	51	0	.	155	C	32610277	T	C	32610277	2	2	141	1	0	0	0	0	0	0	0	1	5023	1739	60	2		2	EIF3M	11	32610277	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	19202002	32610277	102396239	128	17972											
PYGM	5837	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	64522270	64522270	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PYGM	NM_005609	exon8	c.T894A	p.Y298X	CACGAAATACTCC	.	41	8	37	0	.	92	T	64522270	A	T	64522270	4	4	141	1	0	0	0	0	0	1	0	0	12862	108	4	4	1686	4	PYGM	11	64522270	Nonsense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	31911993	64522270	70484246	129	17973											
CST6	1474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65780325	65780325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CST6	NM_001323	exon2	c.C269A	p.T90K	TCCTGACGATGGA	.	35	25	53	0	.	523	A	65780325	C	A	65780325	3	1	141	1	0	0	0	0	1	0	0	0	3976	536	19	1	275	1	CST6	11	65780325	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	1258055	65780325	69226191	130	17974											
SPTBN2	6712	ucsc.edu;bcgsc.ca	37	11	66482855	66482855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN2	NM_006946	exon4	c.A321G	p.T107T	GCCCTTTGTAGGC	.	42	4	51	0	.	155	C	66482855	T	C	66482855	2	2	141	1	0	0	0	0	0	0	0	1	15119	1799	63	2		2	SPTBN2	11	66482855	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	702530	66482855	68523661	131	17975											
PC	5091	ucsc.edu;bcgsc.ca	37	11	66619923	66619923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PC	NM_000920	exon14	c.G1812A	p.M604I	GTTCTCCATGCTG	.	24	4	52	0	.	228	T	66619923	C	T	66619923	3	4	141	1	0	0	0	0	1	0	0	0	11497	594	21	3	1760	3	PC	11	66619923	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	137068	66619923	68386593	132	17976											
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67264809	67264809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PITPNM1	NM_001130848	exon14	c.C2039T	p.P680L	CTGCTGGGGCCGT	.	38	4	49	0	.	227	A	67264809	G	A	67264809	3	1	141	1	0	0	0	0	1	0	0	0	11950	1232	43	3	1739	3	PITPNM1	11	67264809	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	644886	67264809	67741707	133	17977											
FGF3	2248	ucsc.edu;bcgsc.ca	37	11	69631167	69631167	+	Missense_Mutation	SNP	T	T	C	rs146864055		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGF3	NM_005247	exon2	c.A245G	p.E82G	CCCACCTCCACTG	.	43	4	66	0	.	847	C	69631167	T	C	69631167	3	2	141	1	0	0	0	0	1	0	0	0	5853	1551	54	2	482	2	FGF3	11	69631167	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	2366358	69631167	65375349	134	17978											
ARAP1	116985	ucsc.edu;bcgsc.ca	37	11	72404496	72404496	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARAP1	NM_001040118	exon29	c.C3828A	p.T1276T	ATGCTTGGTGTCA	.	41	4	46	0	.	91	T	72404496	G	T	72404496	2	4	141	1	0	0	0	0	0	0	0	1	838	1335	47	3		3	ARAP1	11	72404496	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	2773329	72404496	62602020	135	17979											
C11orf30	56946	ucsc.edu;bcgsc.ca	37	11	76224573	76224573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C11orf30	NM_020193	exon10	c.C1507A	p.P503T	ACCACTCCTACTG	.	43	4	74	0	.	232	A	76224573	C	A	76224573	3	1	141	1	0	0	0	0	1	0	0	0	1636	855	30	3	1541	3	C11orf30	11	76224573	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	3820077	76224573	58781943	136	17980											
LRRC32	2615	ucsc.edu;bcgsc.ca	37	11	76371606	76371606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC32	NM_005512	exon3	c.T1031C	p.L344P	AGGTTCAGGAAGC	.	31	4	37	0	.	90	G	76371606	A	G	76371606	3	3	141	1	0	0	0	0	1	0	0	0	8987	188	7	2	961	2	LRRC32	11	76371606	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	147033	76371606	58634910	137	17981											
TYR	7299	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911776	88911776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TYR	NM_000372	exon1	c.G655C	p.E219Q	CGGTGGGAACAAG	.	25	8	25	0	.	92	C	88911776	G	C	88911776	3	2	141	1	0	0	0	0	1	0	0	0	16810	1175	41	4	657	4	TYR	11	88911776	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	12540170	88911776	46094740	138	17982											
CASP1	834	ucsc.edu;bcgsc.ca	37	11	104897623	104897623	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CASP1	NM_001257118	exon8	c.T1062C	p.I354I	ATGTTCAATGAGT	.	42	5	31	0	.	661	G	104897623	A	G	104897623	2	3	141	1	0	0	0	0	0	0	0	1	2668	126	5	2		2	CASP1	11	104897623	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	15985847	104897623	30108893	139	17983											
CADM1	23705	ucsc.edu;bcgsc.ca	37	11	115099884	115099884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CADM1	NM_014333	exon5	c.C670A	p.H224N	CAGGGTGCTCCAC	.	38	4	34	0	.	92	T	115099884	G	T	115099884	3	4	141	1	0	0	0	0	1	0	0	0	2566	1319	46	3	682	3	CADM1	11	115099884	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	10202261	115099884	19906632	140	17984											
MLL	4297	ucsc.edu;bcgsc.ca	37	11	118343416	118343416	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLL	NM_001197104	exon3	c.C1542T	p.P514P	ACTGCCCATTTCC	.	40	4	34	0	.	1255	T	118343416	C	T	118343416	2	4	141	1	0	0	0	0	0	0	0	1	9620	581	21	3		3	MLL	11	118343416	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	3243532	118343416	16663100	141	17985											
GRAMD1B	57476	ucsc.edu;bcgsc.ca	37	11	123448232	123448232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRAMD1B	NM_020716	exon2	c.G181T	p.V61L	CAGGGCGTGCAGC	.	42	4	62	0	.	69	T	123448232	G	T	123448232	3	4	141	1	0	0	0	0	1	0	0	0	6748	1145	40	1	187	1	GRAMD1B	11	123448232	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	5104816	123448232	11558284	142	17986											
IGSF9B	22997	ucsc.edu;bcgsc.ca	37	11	133801031	133801031	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IGSF9B	NM_014987	exon12	c.1369-2A>G	.	CCTACCTTGGTGA	.	43	4	69	0	.	68	C	133801031	T	C	133801031	5	2	141	1	0	0	0	0	0	0	1	0	7606	1623	56	2	2718	2	IGSF9B	11	133801031	Splice_Site	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	10352799	133801031	1205485	143	17987											
FBXL14	144699	ucsc.edu;bcgsc.ca	37	12	1702850	1702850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXL14	NM_152441	exon1	c.A383G	p.K128R	ATCTGCTTGCAGA	.	53	5	67	0	.	227	C	1702850	T	C	1702850	3	2	141	1	0	0	0	0	1	0	0	0	5710	1609	56	2	881	2	FBXL14	12	1702850	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		1702850	132149045	144	17988											
MLF2	8079	ucsc.edu;bcgsc.ca	37	12	6861205	6861205	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLF2	NM_005439	exon3	c.T66C	p.I22I	ACGGTGAATAGCA	.	43	4	35	0	.	153	G	6861205	A	G	6861205	2	3	141	1	0	0	0	0	0	0	0	1	9616	242	9	2		2	MLF2	12	6861205	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	5158355	6861205	126990690	145	17989											
TAS2R30	259293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11286203	11286203	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001097643	exon1	c.A641T	p.K214I	GATCCTTTGCCAT	.	205	22	131	0	.	.	A	11286203	T	A	11286203	3	1	141	1	0	0	0	0	1	0	0	0	15570	1841	64	4	322	4	TAS2R30	12	11286203	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	4424998	11286203	122565692	146	17990											
SLC4A8	9498	ucsc.edu;bcgsc.ca	37	12	51868218	51868218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC4A8	NM_001039960	exon15	c.A1997G	p.N666S	GGGCTAACCTGAC	.	48	4	30	0	.	95	G	51868218	A	G	51868218	3	3	141	1	0	0	0	0	1	0	0	0	14659	43	2	2	2055	2	SLC4A8	12	51868218	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	40582015	51868218	81983677	147	17991											
KRT85	3891	ucsc.edu;bcgsc.ca	37	12	52758150	52758150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KRT85	NM_002283	exon3	c.G630T	p.K210N	TTCATACCTGGGT	.	42	6	32	0	.	91	A	52758150	C	A	52758150	3	1	141	1	0	0	0	0	1	0	0	0	8499	521	18	3	921	3	KRT85	12	52758150	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	889932	52758150	81093745	148	17992											
ITGA7	3679	ucsc.edu;bcgsc.ca	37	12	56086982	56086982	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	ITGA7,NS,carcinoma,0	ITGA7	NM_001144996	exon20	c.C2667A	p.G889G	CTGCCCGCCCTCC	.	40	4	28	0	.	229	T	56086982	G	T	56086982	2	4	141	1	0	0	0	0	0	0	0	1	7881	1074	38	1		1	ITGA7	12	56086982	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	3328832	56086982	77764913	149	17993											
METTL1	4234	ucsc.edu;bcgsc.ca	37	12	58163694	58163694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	METTL1	NM_005371	exon3	c.A320G	p.E107G	CGGATCTCCAGAC	.	43	4	40	0	.	492	C	58163694	T	C	58163694	3	2	141	1	0	0	0	0	1	0	0	0	9493	1551	54	2	526	2	METTL1	12	58163694	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	2076712	58163694	75688201	150	17994											
CDK17	5128	ucsc.edu;bcgsc.ca	37	12	96707197	96707197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK17	NM_001170464	exon4	c.G319A	p.G107S	TCTCACCATCTGA	.	28	4	24	0	.	550	T	96707197	C	T	96707197	3	4	141	1	0	0	0	0	1	0	0	0	3133	594	21	3	1346	3	CDK17	12	96707197	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	38543503	96707197	37144698	151	17995											
UTP20	27340	ucsc.edu;bcgsc.ca	37	12	101689334	101689334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UTP20	NM_014503	exon12	c.T1328A	p.L443Q	AAGCTCTGGCCAT	.	41	4	38	0	.	155	A	101689334	T	A	101689334	3	1	141	1	0	0	0	0	1	0	0	0	17096	1580	55	4	1374	4	UTP20	12	101689334	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	4982137	101689334	32162561	152	17996											
OAS1	4938	ucsc.edu;bcgsc.ca	37	12	113354512	113354512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OAS1	NM_001032409	exon4	c.A853G	p.K285E	ATTGAAAAGTACC	.	47	4	43	0	.	70	G	113354512	A	G	113354512	3	3	141	1	0	0	0	0	1	0	0	0	10799	15	1	2	867	2	OAS1	12	113354512	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	11665178	113354512	20497383	153	17997											
PLBD2	196463	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	113824744	113824744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLBD2	NM_173542	exon10	c.C1289T	p.S430F	GCAGGTCCTTCGA	.	30	15	18	0	.	68	T	113824744	C	T	113824744	3	4	141	1	0	0	0	0	1	0	0	0	12026	855	30	3	1327	3	PLBD2	12	113824744	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	470232	113824744	20027151	154	17998											
KNTC1	9735	broad.mit.edu;bcgsc.ca	37	12	123060387	123060387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNTC1	NM_014708	exon29	c.A2527G	p.K843E	GAGATGAAAAAAC	.	155	7	201	0	.	543	G	123060387	A	G	123060387	3	3	141	1	0	0	0	0	1	0	0	0	8428	247	9	2	2637	2	KNTC1	12	123060387	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	9235643	123060387	10791508	155	17999											
HIP1R	9026	ucsc.edu;bcgsc.ca	37	12	123339461	123339461	+	Missense_Mutation	SNP	C	C	T	rs191719039	by1000genomes	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIP1R	NM_003959	exon9	c.C728T	p.A243V	TCCCTGCGGACAC	.	51	4	44	0	C|0.994;T|0.006	91	T	123339461	C	T	123339461	3	4	141	1	0	0	0	0	1	0	0	0	7115	768	27	1	762	1	HIP1R	12	123339461	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	279074	123339461	10512434	156	18000											
FLT1	2321	ucsc.edu;bcgsc.ca	37	13	28896449	28896449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FLT1	NM_002019	exon22	c.T3001C	p.S1001P	TGTAAGAAATCAG	.	35	4	42	0	.	1406	G	28896449	A	G	28896449	3	3	141	1	0	0	0	0	1	0	0	0	5941	246	9	2	1051	2	FLT1	13	28896449	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10		28896449	86273429	157	18001											
SMAD9	4093	ucsc.edu;bcgsc.ca	37	13	37453767	37453767	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMAD9	NM_005905	exon2	c.A60G	p.R20R	TAGCAGTCTCTTC	.	48	4	92	0	.	414	C	37453767	T	C	37453767	2	2	141	1	0	0	0	0	0	0	0	1	14764	1664	58	2		2	SMAD9	13	37453767	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	8557318	37453767	77716111	158	18002											
UFM1	51569	ucsc.edu;bcgsc.ca	37	13	38933458	38933458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UFM1	NM_016617	exon5	c.G178T	p.A60S	AATCCTGCACAGA	.	38	4	74	0	.	68	T	38933458	G	T	38933458	3	4	141	1	0	0	0	0	1	0	0	0	16933	1319	46	3	196	3	UFM1	13	38933458	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1479691	38933458	76236420	159	18003											
FARP1	10160	ucsc.edu;bcgsc.ca	37	13	98896771	98896771	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FARP1	NM_001001715	exon3	c.A198G	p.K66K	CCTCAAAGCCACC	.	39	4	32	0	.	290	G	98896771	A	G	98896771	2	3	141	1	0	0	0	0	0	0	0	1	5676	69	3	2		2	FARP1	13	98896771	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	59963313	98896771	16273107	160	18004											
FARP1	10160	ucsc.edu;bcgsc.ca	37	13	99091413	99091413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FARP1	NM_005766	exon21	c.T2396C	p.F799S	ATCAGTTTAAAGT	.	31	4	56	0	.	290	C	99091413	T	C	99091413	3	2	141	1	0	0	0	0	1	0	0	0	5676	1841	64	2	2697	2	FARP1	13	99091413	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	194642	99091413	16078465	161	18005											
NALCN	259232	ucsc.edu;bcgsc.ca	37	13	101881828	101881828	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NALCN	NM_052867	exon13	c.C1542T	p.A514A	GAGGCTGGCAGTA	.	40	4	51	0	.	167	A	101881828	G	A	101881828	2	1	141	1	0	0	0	0	0	0	0	1	10148	1335	47	3		3	NALCN	13	101881828	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	2790415	101881828	13288050	162	18006											
PCID2	55795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113835485	113835485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCID2	NM_001258212	exon10	c.A907G	p.R303G	TCATCCTTTTGTT	.	31	11	54	0	.	90	C	113835485	T	C	113835485	3	2	141	1	0	0	0	0	1	0	0	0	11579	1608	56	2	474	2	PCID2	13	113835485	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	11953657	113835485	1334393	163	18007											
RNASE10	338879	ucsc.edu;bcgsc.ca	37	14	20979191	20979191	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RNASE10	NM_001012975	exon1	c.T561C	p.T187T	GGTCACTCCTAAC	.	35	5	35	0	.	90	C	20979191	T	C	20979191	2	2	141	1	0	0	0	0	0	0	0	1	13400	1538	54	2		2	RNASE10	14	20979191	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		20979191	86370349	164	18008											
STXBP6	29091	broad.mit.edu;bcgsc.ca	37	14	25281918	25281918	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STXBP6	NM_014178	exon6	c.T630C	p.C210C	TTCTCAACATTTG	.	51	6	42	1	.	90	G	25281918	A	G	25281918	2	3	141	1	0	0	0	0	0	0	0	1	15357	41	2	2		2	STXBP6	14	25281918	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	4302727	25281918	82067622	165	18009											
RYR3	6263	ucsc.edu;bcgsc.ca	37	15	34030707	34030707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR3	NM_001243996	exon50	c.G7572T	p.W2524C	AGGATGGGGGAGC	.	59	5	35	0	.	520	T	34030707	G	T	34030707	3	4	141	1	0	0	0	0	1	0	0	0	13770	1241	43	3	7770	3	RYR3	15	34030707	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10		34030707	68500685	166	18010											
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42182309	42182309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN5	NM_016642	exon4	c.T374C	p.I125T	TGGGAGATCTGGA	.	60	7	61	0	.	91	G	42182309	A	G	42182309	3	3	141	1	0	0	0	0	1	0	0	0	15121	333	12	2	10805	2	SPTBN5	15	42182309	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	8151602	42182309	60349083	167	18011											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54306377	54306377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon1	c.C1277T	p.T426I	CCCAGACATATGA	.	86	36	65	0	.	51	T	54306377	C	T	54306377	3	4	141	1	0	0	0	0	1	0	0	0	16983	478	17	3	1279	3	UNC13C	15	54306377	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	12124068	54306377	48225015	168	18012											
UNC13C	440279	broad.mit.edu;bcgsc.ca	37	15	54825170	54825170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon24	c.A5602G	p.M1868V	AATCAAATGAGAG	.	160	8	144	0	.	51	G	54825170	A	G	54825170	3	3	141	1	0	0	0	0	1	0	0	0	16983	101	4	2	5696	2	UNC13C	15	54825170	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	518793	54825170	47706222	169	18013											
TLE3	7090	ucsc.edu;bcgsc.ca	37	15	70368485	70368485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TLE3	NM_001105192	exon5	c.A247G	p.K83E	GTCTCTTCGCAAT	.	45	4	37	0	.	522	C	70368485	T	C	70368485	3	2	141	1	0	0	0	0	1	0	0	0	15937	1792	62	2	2135	2	TLE3	15	70368485	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	15543315	70368485	32162907	170	18014											
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86123458	86123458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKAP13	NM_007200	exon7	c.A2159G	p.D720G	CCTCTGACCCTGT	.	48	5	47	0	.	258	G	86123458	A	G	86123458	3	3	141	1	0	0	0	0	1	0	0	0	449	275	10	2	2181	2	AKAP13	15	86123458	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	15754973	86123458	16407934	171	18015											
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90631837	90631837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IDH2,brain,glioma,-1	IDH2	NM_002168	exon4	c.G516C	p.R172S	GGCGTGCCTGCCA	.	96	40	132	0	.	15118	G	90631837	C	G	90631837	3	3	141	1	0	0	0	0	1	0	0	0	7495	738	26	4	874	4	IDH2	15	90631837	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	4508379	90631837	11899555	172	18016											
TMC7	79905	ucsc.edu;bcgsc.ca	37	16	19070791	19070791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC7	NM_024847	exon15	c.T2081C	p.I694T	TGGTCATCCAGCT	.	43	5	27	0	.	93	C	19070791	T	C	19070791	3	2	141	1	0	0	0	0	1	0	0	0	15987	1435	50	2	2139	2	TMC7	16	19070791	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		19070791	71283962	173	18017											
NSMCE1	197370	ucsc.edu;bcgsc.ca	37	16	27238075	27238075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NSMCE1	NM_145080	exon6	c.A566G	p.K189R	CAGATCTTCACCG	.	43	5	34	0	.	90	C	27238075	T	C	27238075	3	2	141	1	0	0	0	0	1	0	0	0	10675	1609	56	2	246	2	NSMCE1	16	27238075	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	8167284	27238075	63116678	174	18018											
SETD1A	9739	ucsc.edu;bcgsc.ca	37	16	30976519	30976519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SETD1A	NM_014712	exon7	c.A1456G	p.S486G	CAGCACAGCAGCC	.	50	4	42	0	.	93	G	30976519	A	G	30976519	3	3	141	1	0	0	0	0	1	0	0	0	14130	188	7	2	1478	2	SETD1A	16	30976519	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	3738444	30976519	59378234	175	18019											
MMP15	4324	ucsc.edu;bcgsc.ca	37	16	58075733	58075733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MMP15	NM_002428	exon6	c.G1123T	p.D375Y	GACTTTGACACAG	.	38	4	57	0	.	713	T	58075733	G	T	58075733	3	4	141	1	0	0	0	0	1	0	0	0	9654	1290	45	3	1145	3	MMP15	16	58075733	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	27099214	58075733	32279020	176	18020											
CNOT1	23019	ucsc.edu;bcgsc.ca	37	16	58612823	58612823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNOT1	NM_206999	exon13	c.A1364G	p.E455G	AGAGATTCAATCA	.	39	4	53	0	.	95	C	58612823	T	C	58612823	3	2	141	1	0	0	0	0	1	0	0	0	3617	1783	62	2	6136	2	CNOT1	16	58612823	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	537090	58612823	31741930	177	18021											
PLEKHG4	25894	ucsc.edu;bcgsc.ca	37	16	67320715	67320715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLEKHG4	NM_001129728	exon17	c.C2818A	p.H940N	GGGCGCCACAAGT	.	39	4	40	0	.	92	A	67320715	C	A	67320715	3	1	141	1	0	0	0	0	1	0	0	0	12071	594	21	3	2880	3	PLEKHG4	16	67320715	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	8707892	67320715	23034038	178	18022											
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77328866	77328866	+	Missense_Mutation	SNP	T	T	C	rs74584252	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTS18	NM_199355	exon19	c.A2960G	p.N987S	TGGCTGTTGCAGG	.	50	4	38	0	.	1036	C	77328866	T	C	77328866	3	2	141	1	0	0	0	0	1	0	0	0	263	1725	60	2	725	2	ADAMTS18	16	77328866	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	10008151	77328866	13025887	179	18023											
CYBA	1535	ucsc.edu;bcgsc.ca	37	16	88713203	88713203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYBA	NM_000101	exon4	c.T247C	p.F83L	TGGTAAAGGGCCC	.	16	4	21	0	.	90	G	88713203	A	G	88713203	3	3	141	1	0	0	0	0	1	0	0	0	4131	72	3	2	352	2	CYBA	16	88713203	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	11384337	88713203	1641550	180	18024											
SPATA2L	124044	ucsc.edu;bcgsc.ca	37	16	89764258	89764258	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPATA2L	NM_152339	exon3	c.C759T	p.P253P	CGCCGGGGGCGAG	.	24	4	26	0	.	90	A	89764258	G	A	89764258	2	1	141	1	0	0	0	0	0	0	0	1	15008	1219	43	3		3	SPATA2L	16	89764258	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1051055	89764258	590495	181	18025											
MYO1C	4641	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	1387559	1387559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO1C	NM_001080779	exon2	c.T114G	p.S38R	GAGCGCACTCTCC	.	9	5	20	1	.	90	C	1387559	A	C	1387559	3	2	141	1	0	0	0	0	1	0	0	0	10070	156	6	5	3201	5	MYO1C	17	1387559	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10		1387559	79807651	182	18026											
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2203159	2203159	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMG6	NM_017575	exon2	c.G888T	p.V296V	CACAGACACTTGC	.	65	19	56	0	.	228	A	2203159	C	A	2203159	2	1	141	1	0	0	0	0	0	0	0	1	14797	465	17	3		3	SMG6	17	2203159	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	815600	2203159	78992051	183	18027											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3957431	3957431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZZEF1	NM_015113	exon34	c.G5354T	p.G1785V	TCACACCCATCAC	.	50	16	42	0	.	93	A	3957431	C	A	3957431	3	1	141	1	0	0	0	0	1	0	0	0	18252	623	22	3	3619	3	ZZEF1	17	3957431	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	1754272	3957431	77237779	184	18028											
CXCL16	58191	ucsc.edu;bcgsc.ca	37	17	4642567	4642567	+	Missense_Mutation	SNP	A	A	G	rs143565057		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CXCL16	NM_022059	exon1	c.T125C	p.L42P	TGAGTCAGGTACA	.	43	5	59	0	A|1.000;G|0.000	226	G	4642567	A	G	4642567	3	3	141	1	0	0	0	0	1	0	0	0	4083	188	7	2	716	2	CXCL16	17	4642567	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	685136	4642567	76552643	185	18029											
C1QBP	708	ucsc.edu;bcgsc.ca	37	17	5336345	5336345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1QBP	NM_001212	exon6	c.A839T	p.K280M	TGGCTCTTGACAA	.	44	5	60	0	.	91	A	5336345	T	A	5336345	3	1	141	1	0	0	0	0	1	0	0	0	1956	1609	56	4	13	4	C1QBP	17	5336345	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	693778	5336345	75858865	186	18030											
TNK1	8711	ucsc.edu;bcgsc.ca	37	17	7291786	7291786	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNK1	NM_001251902	exon11	c.A1554G	p.S518S	TGGTTCAAGCCCC	.	31	4	63	0	.	547	G	7291786	A	G	7291786	2	3	141	1	0	0	0	0	0	0	0	1	16314	117	5	2		2	TNK1	17	7291786	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	1955441	7291786	73903424	187	18031											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27421740	27421740	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO18A	NM_078471	exon30	c.C4638T	p.D1546D	CTCCAGGTCCCGG	.	108	33	145	0	.	22	A	27421740	G	A	27421740	2	1	141	1	0	0	0	0	0	0	0	1	10065	1252	44	3		3	MYO18A	17	27421740	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	20129954	27421740	53773470	188	18032											
SLC6A4	6532	ucsc.edu;bcgsc.ca	37	17	28543143	28543143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC6A4	NM_001045	exon7	c.T929C	p.L310P	TAGAAGAGAACAC	.	28	4	30	0	.	94	G	28543143	A	G	28543143	3	3	141	1	0	0	0	0	1	0	0	0	14686	304	11	2	999	2	SLC6A4	17	28543143	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	1121403	28543143	52652067	189	18033											
CDK12	51755	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37619236	37619236	+	Silent	SNP	C	C	G	rs56403491	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK12	NM_016507	exon1	c.C912G	p.P304P	CAGTCCCTATAGC	.	37	19	54	0	C|0.998;G|0.002	1055	G	37619236	C	G	37619236	2	3	141	1	0	0	0	0	0	0	0	1	3128	668	24	4		4	CDK12	17	37619236	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	9076093	37619236	43575974	190	18034											
SPATA20	64847	ucsc.edu;bcgsc.ca	37	17	48625120	48625120	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPATA20	NM_022827	exon2	c.T117C	p.S39S	CAGGAGTCCCAGC	.	46	4	81	0	.	90	C	48625120	T	C	48625120	2	2	141	1	0	0	0	0	0	0	0	1	15005	1664	58	2		2	SPATA20	17	48625120	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	11005884	48625120	32570090	191	18035											
MRC2	9902	ucsc.edu;bcgsc.ca	37	17	60759723	60759723	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRC2	NM_006039	exon20	c.C2931A	p.I977I	CTGGATCCAGTTC	.	45	4	82	0	.	117	A	60759723	C	A	60759723	2	1	141	1	0	0	0	0	0	0	0	1	9758	845	30	3		3	MRC2	17	60759723	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	12134603	60759723	20435487	192	18036											
C17orf77	146723	ucsc.edu;bcgsc.ca	37	17	72588235	72588235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C17orf77	NM_152460	exon3	c.A50G	p.N17S	CTGAGAACAGAGC	.	48	4	44	0	.	90	G	72588235	A	G	72588235	3	3	141	1	0	0	0	0	1	0	0	0	1882	43	2	2	52	2	C17orf77	17	72588235	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	11828512	72588235	8606975	193	18037											
LPIN2	9663	ucsc.edu;bcgsc.ca	37	18	2920361	2920361	+	Missense_Mutation	SNP	C	C	A	rs201160155		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPIN2	NM_014646	exon20	c.G2621T	p.C874F	TCCGGGCAGGGAA	.	39	4	44	0	C|0.999;A|0.001	227	A	2920361	C	A	2920361	3	1	141	1	0	0	0	0	1	0	0	0	8919	710	25	3	73	3	LPIN2	18	2920361	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10		2920361	75156887	194	18038											
AFG3L2	10939	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	12329714	12329714	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.A2244G	p.R748R	AAATGGTCTGGGG	.	84	36	91	0	.	90	C	12329714	T	C	12329714	2	2	141	1	0	0	0	0	0	0	0	1	360	1664	58	2		2	AFG3L2	18	12329714	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	9409353	12329714	65747534	195	18039	99	2									
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	12329717	12329717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.2241delC	p.P747fs	TGGTCTGGGGCCC	.	86	31	90	0	.	90	-	12329717	G	-	12329717	7	5	141	1	0	1	0	1	0	0	0	0	360	1335	47	0	156	0	AFG3L2	18	12329717	Frame_Shift_Del	DEL	G	TCGA-G3-A25T-01A-11D-A16V-10	3	12329717	65747531	196	18040	99	2									
CDH2	1000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25591881	25591881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDH2	NM_001792	exon4	c.A475G	p.R159G	AGTCTCTCTTCTG	.	88	33	81	1	.	525	C	25591881	T	C	25591881	3	2	141	1	0	0	0	0	1	0	0	0	3105	1559	54	2	2297	2	CDH2	18	25591881	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	13262164	25591881	52485367	197	18041											
ST8SIA3	51046	ucsc.edu;bcgsc.ca	37	18	55024608	55024608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ST8SIA3	NM_015879	exon3	c.T767C	p.V256A	CAACTGTGACCAG	.	50	4	42	0	.	136	C	55024608	T	C	55024608	3	2	141	1	0	0	0	0	1	0	0	0	15232	1696	59	2	777	2	ST8SIA3	18	55024608	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	29432727	55024608	23052640	198	18042											
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56585829	56585829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF532	NM_018181	exon4	c.A310G	p.K104E	TACAGTAAAGATG	.	73	14	56	0	.	154	G	56585829	A	G	56585829	3	3	141	1	0	0	0	0	1	0	0	0	17969	363	13	2	312	2	ZNF532	18	56585829	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	1561221	56585829	21491419	199	18043											
PQLC1	80148	ucsc.edu;bcgsc.ca	37	18	77710729	77710729	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PQLC1	NM_025078	exon2	c.C198T	p.L66L	CCAGAAGAGTATC	.	51	5	73	0	.	154	A	77710729	G	A	77710729	2	1	141	1	0	0	0	0	0	0	0	1	12418	929	33	3		3	PQLC1	18	77710729	Silent	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	21124900	77710729	366519	200	18044											
ZNF554	115196	ucsc.edu;bcgsc.ca	37	19	2827728	2827728	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF554	NM_001102651	exon3	c.C240T	p.N80N	CAGGAACGTGGTC	.	39	4	52	0	.	91	T	2827728	C	T	2827728	2	4	141	1	0	0	0	0	0	0	0	1	17982	535	19	1		1	ZNF554	19	2827728	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10		2827728	56301255	201	18045											
NCLN	56926	ucsc.edu;bcgsc.ca	37	19	3204024	3204024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCLN	NM_020170	exon8	c.A911G	p.N304S	AGGACAATGTGGC	.	46	4	56	0	.	90	G	3204024	A	G	3204024	3	3	141	1	0	0	0	0	1	0	0	0	10227	101	4	2	941	2	NCLN	19	3204024	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	376296	3204024	55924959	202	18046											
ANKRD24	170961	ucsc.edu;bcgsc.ca	37	19	4224483	4224483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD24	NM_133475	exon22	c.T3422C	p.L1141P	AGAGACTCCAGGC	.	25	4	21	0	.	68	C	4224483	T	C	4224483	3	2	141	1	0	0	0	0	1	0	0	0	653	1551	54	2	3504	2	ANKRD24	19	4224483	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	1020459	4224483	54904500	203	18047											
ZNF433	163059	ucsc.edu;bcgsc.ca	37	19	12128986	12128986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080411	exon2	c.C134A	p.S45Y	CCTATAGAGGCCA	.	50	4	56	0	.	.	T	12128986	G	T	12128986	3	4	141	1	0	0	0	0	1	0	0	0	17904	942	33	3	1899	3	ZNF433	19	12128986	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	7904503	12128986	46999997	204	18048											
ZNF20	7568	ucsc.edu;bcgsc.ca	37	19	12243668	12243668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF20	NM_021143	exon4	c.C1333T	p.H445Y	CAGTGTGTGTCCT	.	41	4	40	0	.	22	A	12243668	G	A	12243668	3	1	141	1	0	0	0	0	1	0	0	0	17758	1377	48	3	269	3	ZNF20	19	12243668	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	114682	12243668	46885315	205	18049											
HNRNPL	3191	ucsc.edu;bcgsc.ca	37	19	39329657	39329657	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HNRNPL	NM_001533	exon10	c.1234-2A>G	.	TTCACCTTGGGGA	.	35	4	28	0	.	22	C	39329657	T	C	39329657	5	2	141	1	0	0	0	0	0	0	1	0	7270	1623	56	2	557	2	HNRNPL	19	39329657	Splice_Site	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	27085989	39329657	19799326	206	18050											
RINL	126432	ucsc.edu;bcgsc.ca	37	19	39360320	39360320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RINL	NM_001195833	exon10	c.T1367C	p.L456P	GCCGGCAGGAAGG	.	45	6	43	0	.	91	G	39360320	A	G	39360320	3	3	141	1	0	0	0	0	1	0	0	0	13375	188	7	2	345	2	RINL	19	39360320	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	30663	39360320	19768663	207	18051											
MEGF8	1954	ucsc.edu;bcgsc.ca	37	19	42839306	42839306	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MEGF8	NM_001271938	exon4	c.T678C	p.S226S	CTTCTCTGCCCGT	.	45	4	44	0	.	23	C	42839306	T	C	42839306	2	2	141	1	0	0	0	0	0	0	0	1	9463	1567	55	2		2	MEGF8	19	42839306	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	3478986	42839306	16289677	208	18052											
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47207834	47207834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRKD2	NM_016457	exon4	c.G584A	p.R195H	GACAGGCGCCGTT	.	47	13	31	0	.	759	T	47207834	C	T	47207834	3	4	141	1	0	0	0	0	1	0	0	0	12519	768	27	1	2112	1	PRKD2	19	47207834	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	4368528	47207834	11921149	209	18053											
SPHK2	56848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49131441	49131441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPHK2	NM_020126	exon6	c.G779A	p.R260H	TAGATCGCCCTGA	.	26	8	37	0	.	658	A	49131441	G	A	49131441	3	1	141	1	0	0	0	0	1	0	0	0	15046	1087	38	1	797	1	SPHK2	19	49131441	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	1923607	49131441	9997542	210	18054											
ZNF416	55659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58084146	58084146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF416	NM_017879	exon4	c.C1126G	p.H376D	CTGTGTGAGTTCT	.	115	29	82	1	.	90	C	58084146	G	C	58084146	3	2	141	1	0	0	0	0	1	0	0	0	17890	1290	45	4	662	4	ZNF416	19	58084146	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	8952705	58084146	1044837	211	18055											
SMOX	54498	ucsc.edu;bcgsc.ca	37	20	4164179	4164179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMOX	NM_175839	exon6	c.T1408C	p.S470P	TTGCGCTCGGCCT	.	29	4	48	0	.	153	C	4164179	T	C	4164179	3	2	141	1	0	0	0	0	1	0	0	0	14803	1551	54	2	1426	2	SMOX	20	4164179	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		4164179	58861341	212	18056											
KIF16B	55614	ucsc.edu;bcgsc.ca	37	20	16360076	16360076	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF16B	NM_001199865	exon19	c.A2571G	p.E857E	CTCCTGTTCTTCT	.	49	5	31	0	.	291	C	16360076	T	C	16360076	2	2	141	1	0	0	0	0	0	0	0	1	8278	1722	60	2		2	KIF16B	20	16360076	Silent	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	12195897	16360076	46665444	213	18057											
XRN2	22803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21346075	21346075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	XRN2	NM_012255	exon25	c.C2272T	p.P758S	AAAGACCCACAGT	.	93	40	107	0	.	515	T	21346075	C	T	21346075	3	4	141	1	0	0	0	0	1	0	0	0	17457	623	22	3	2370	3	XRN2	20	21346075	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	4985999	21346075	41679445	214	18058											
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31019176	31019176	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASXL1	NM_015338	exon8	c.C771T	p.S257S	TGGGTCCATTCTT	.	77	6	41	0	.	2057	T	31019176	C	T	31019176	2	4	141	1	0	0	0	0	0	0	0	1	1066	581	21	3		3	ASXL1	20	31019176	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	9673101	31019176	32006344	215	18059											
UQCC	55245	ucsc.edu;bcgsc.ca	37	20	33902530	33902530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UQCC	NM_018244	exon8	c.G612T	p.M204I	ATTTGTCATGAGG	.	45	5	54	0	.	153	A	33902530	C	A	33902530	3	1	141	1	0	0	0	0	1	0	0	0	17012	826	29	3	299	3	UQCC	20	33902530	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	2883354	33902530	29122990	216	18060											
CHD6	84181	ucsc.edu;bcgsc.ca	37	20	40052166	40052166	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD6	NM_032221	exon30	c.G4521A	p.R1507R	GACATTCCGGCAC	.	44	4	52	0	.	238	T	40052166	C	T	40052166	2	4	141	1	0	0	0	0	0	0	0	1	3329	842	30	3		3	CHD6	20	40052166	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	6149636	40052166	22973354	217	18061											
MYBL2	4605	ucsc.edu;bcgsc.ca	37	20	42331148	42331148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYBL2	NM_002466	exon8	c.G970A	p.D324N	TGGTGTGACCTGA	.	48	5	48	0	.	415	A	42331148	G	A	42331148	3	1	141	1	0	0	0	0	1	0	0	0	10010	1290	45	3	1000	3	MYBL2	20	42331148	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	2278982	42331148	20694372	218	18062											
SEMG1	6406	broad.mit.edu;bcgsc.ca	37	20	43837123	43837123	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEMG1	NM_003007	exon2	c.A1185G	p.Q395Q	TAAGCAAGAGCCA	.	66	4	62	0	.	92	G	43837123	A	G	43837123	2	3	141	1	0	0	0	0	0	0	0	1	14044	69	3	2		2	SEMG1	20	43837123	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	1505975	43837123	19188397	219	18063											
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62324537	62324537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RTEL1	NM_032957	exon30	c.G2965A	p.E989K	CAGTTTGAGGAGG	.	44	4	44	0	.	44	A	62324537	G	A	62324537	3	1	141	1	0	0	0	0	1	0	0	0	13720	1291	45	3	3007	3	RTEL1	20	62324537	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	18487414	62324537	700983	220	18064											
AGPAT3	56894	ucsc.edu;bcgsc.ca	37	21	45397947	45397947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGPAT3	NM_001037553	exon7	c.T788C	p.I263T	AAGACATCCCGCT	.	34	4	46	0	.	90	C	45397947	T	C	45397947	3	2	141	1	0	0	0	0	1	0	0	0	388	1435	50	2	810	2	AGPAT3	21	45397947	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10		45397947	2731948	221	18065											
MCM3AP	8888	ucsc.edu;bcgsc.ca	37	21	47686021	47686021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCM3AP	NM_003906	exon11	c.A2849G	p.K950R	ACCGACTTCCTGG	.	40	4	34	0	.	291	C	47686021	T	C	47686021	3	2	141	1	0	0	0	0	1	0	0	0	9388	1609	56	2	3165	2	MCM3AP	21	47686021	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	2288074	47686021	443874	222	18066											
SEC14L3	266629	ucsc.edu;bcgsc.ca	37	22	30860870	30860870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEC14L3	NM_174975	exon8	c.G601A	p.G201S	TGTAGCCCACAGG	.	56	5	88	0	.	95	T	30860870	C	T	30860870	3	4	141	1	0	0	0	0	1	0	0	0	13983	623	22	3	621	3	SEC14L3	22	30860870	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10		30860870	20443696	223	18067											
NAGA	4668	ucsc.edu;bcgsc.ca	37	22	42463846	42463846	+	Missense_Mutation	SNP	C	C	T	rs202010344		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NAGA	NM_000262	exon3	c.G247A	p.G83S	GACCACCGATCCA	.	39	4	45	0	C|0.999;T|0.000	90	T	42463846	C	T	42463846	3	4	141	1	0	0	0	0	1	0	0	0	10141	652	23	1	1016	1	NAGA	22	42463846	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	11602976	42463846	8840720	224	18068											
KIAA1644	85352	ucsc.edu;bcgsc.ca	37	22	44692666	44692666	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1644	NM_001099294	exon3	c.T167A	p.F56Y	AGGATGAAGGTCT	.	49	4	73	0	.	23	T	44692666	A	T	44692666	3	4	141	1	0	0	0	0	1	0	0	0	8250	246	9	4	444	4	KIAA1644	22	44692666	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	2228820	44692666	6611900	225	18069											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149594	34149594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM47A	NM_203408	exon1	c.G802T	p.D268Y	CAGAATCCAGTTT	.	102	56	66	0	.	134	A	34149594	C	A	34149594	3	1	141	1	0	0	0	0	1	0	0	0	5569	855	30	3	1577	3	FAM47A	23	34149594	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10		34149594	121120966	226	18070											
CCDC120	90060	ucsc.edu;bcgsc.ca	37	X	48919845	48919845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC120	NM_001163321	exon3	c.T143C	p.F48S	CTACCTTCAATGC	.	34	4	46	0	.	131	C	48919845	T	C	48919845	3	2	141	1	0	0	0	0	1	0	0	0	2756	1783	62	2	40	2	CCDC120	23	48919845	Missense_Mutation	SNP	T	TCGA-G3-A25T-01A-11D-A16V-10	14770251	48919845	106350715	227	18071											
ALAS2	212	ucsc.edu;bcgsc.ca	37	X	55040038	55040038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALAS2	NM_000032	exon10	c.T1481C	p.L494P	TTGGAGAGCAGGA	.	65	5	64	0	.	131	G	55040038	A	G	55040038	3	3	141	1	0	0	0	0	1	0	0	0	485	304	11	2	290	2	ALAS2	23	55040038	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	6120193	55040038	100230522	228	18072											
GPRASP1	9737	ucsc.edu;bcgsc.ca	37	X	101911002	101911002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPRASP1	NM_001099411	exon3	c.G2161T	p.G721W	ATTATAGGGTCCT	.	35	5	41	0	.	131	T	101911002	G	T	101911002	3	4	141	1	0	0	0	0	1	0	0	0	6722	1000	35	3	2163	3	GPRASP1	23	101911002	Missense_Mutation	SNP	G	TCGA-G3-A25T-01A-11D-A16V-10	46870964	101911002	53359558	229	18073											
TSC22D3	1831	broad.mit.edu;bcgsc.ca	37	X	106959961	106959961	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSC22D3	NM_004089	exon1	c.T81A	p.S27S	AAGCAGAGAAGAG	.	34	8	87	0	.	197	T	106959961	A	T	106959961	2	4	141	1	0	0	0	0	0	0	0	1	16606	291	11	4		4	TSC22D3	23	106959961	Silent	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	5048959	106959961	48310599	230	18074											
DCX	1641	ucsc.edu;bcgsc.ca	37	X	110644538	110644538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCX	NM_000555	exon3	c.T628C	p.S210P	TGTCTGAGGAACA	.	52	5	44	0	.	554	G	110644538	A	G	110644538	3	3	141	1	0	0	0	0	1	0	0	0	4318	304	11	2	732	2	DCX	23	110644538	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	3684577	110644538	44626022	231	18075											
KIAA1210	57481	ucsc.edu;bcgsc.ca	37	X	118230610	118230610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1210	NM_020721	exon8	c.G1113T	p.L371F	TGCAGTCAAGGAC	.	60	5	64	0	.	67	A	118230610	C	A	118230610	3	1	141	1	0	0	0	0	1	0	0	0	8214	825	29	3	4044	3	KIAA1210	23	118230610	Missense_Mutation	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	7586072	118230610	37039950	232	18076											
ABCD1	215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152991039	152991039	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCD1	NM_000033	exon1	c.C318T	p.F106F	CACCTTCCTGTCG	.	25	8	47	0	.	130	T	152991039	C	T	152991039	2	4	141	1	0	0	0	0	0	0	0	1	60	854	30	3		3	ABCD1	23	152991039	Silent	SNP	C	TCGA-G3-A25T-01A-11D-A16V-10	34760429	152991039	2279521	233	18077											
FAM3A	60343	ucsc.edu;bcgsc.ca	37	X	153735768	153735768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM3A	NM_001171132	exon8	c.T439C	p.F147L	CCACGAACACCAG	.	26	4	50	0	.	130	G	153735768	A	G	153735768	3	3	141	1	0	0	0	0	1	0	0	0	5556	43	2	2	265	2	FAM3A	23	153735768	Missense_Mutation	SNP	A	TCGA-G3-A25T-01A-11D-A16V-10	744729	153735768	1534792	234	18078											
LZIC	84328	ucsc.edu;bcgsc.ca	37	1	9992006	9992006	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LZIC	NM_032368	exon6	c.T457C	p.L153L	CTGACAAGAAGGC	.	43	4	38	0	.	90	G	9992006	A	G	9992006	2	3	142	1	0	0	0	0	0	0	0	1	9135	69	3	2		2	LZIC	1	9992006	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10		9992006	239258615	1	18079											
ZBTB40	9923	ucsc.edu;bcgsc.ca	37	1	22839460	22839460	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZBTB40	NM_001083621	exon13	c.T2505C	p.P835P	GAAGCCTTTCTCC	.	40	5	24	0	.	91	C	22839460	T	C	22839460	2	2	142	1	0	0	0	0	0	0	0	1	17539	1596	56	2		2	ZBTB40	1	22839460	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	12847454	22839460	226411161	2	18080											
HCRTR1	3061	ucsc.edu;bcgsc.ca	37	1	32092400	32092400	+	Missense_Mutation	SNP	G	G	T	rs202193411	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HCRTR1	NM_001525	exon9	c.G1097T	p.R366L	AATTCCGGGAGCA	.	42	4	49	1	G|0.999;A|0.000	523	T	32092400	G	T	32092400	3	4	142	1	0	0	0	0	1	0	0	0	7001	1116	39	1	1123	1	HCRTR1	1	32092400	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	9252940	32092400	217158221	3	18081											
EPHA10	284656	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38192825	38192825	+	Missense_Mutation	SNP	G	G	A	rs34409053		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPHA10	NM_001099439	exon8	c.C1721T	p.S574L	AGGGCCGAGATGG	.	44	21	45	0	G|0.991;A|0.009	1246	A	38192825	G	A	38192825	3	1	142	1	0	0	0	0	1	0	0	0	5166	1059	37	1	1345	1	EPHA10	1	38192825	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	6100425	38192825	211057796	4	18082											
BEST4	266675	ucsc.edu;bcgsc.ca	37	1	45251285	45251285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BEST4	NM_153274	exon5	c.C700A	p.L234I	AGACGAGGGGGAT	.	56	4	52	0	.	91	T	45251285	G	T	45251285	3	4	142	1	0	0	0	0	1	0	0	0	1407	1000	35	3	741	3	BEST4	1	45251285	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	7058460	45251285	203999336	5	18083											
PTCH2	8643	ucsc.edu;bcgsc.ca	37	1	45296615	45296615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	PTCH2,NS,malignant_melanoma,+2	PTCH2	NM_001166292	exon6	c.A718G	p.K240E	GTGCCTTGTCTAG	.	41	4	61	0	.	851	C	45296615	T	C	45296615	3	2	142	1	0	0	0	0	1	0	0	0	12731	1821	63	2	2981	2	PTCH2	1	45296615	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	45330	45296615	203954006	6	18084											
WDR78	79819	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	67292730	67292730	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR78	NM_024763	exon16	c.2113-1G>A	.	TGGACCCTAGAAA	.	183	83	159	1	.	92	T	67292730	C	T	67292730	5	4	142	1	0	0	0	0	0	0	1	0	17325	695	24	3	446	3	WDR78	1	67292730	Splice_Site	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	21996115	67292730	181957891	7	18085											
SLC44A3	126969	ucsc.edu;bcgsc.ca	37	1	95332918	95332918	+	Missense_Mutation	SNP	G	G	T	rs142020864	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC44A3	NM_001114106	exon12	c.G1427T	p.R476L	TGTTCCGATGCTG	.	55	6	58	0	G|0.999;A|0.001	91	T	95332918	G	T	95332918	3	4	142	1	0	0	0	0	1	0	0	0	14637	1058	37	1	1473	1	SLC44A3	1	95332918	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	28040188	95332918	153917703	8	18086											
SPAG17	200162	ucsc.edu;bcgsc.ca	37	1	118727771	118727771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPAG17	NM_206996	exon1	c.A10G	p.K4E	CCTTCTTGGGTGC	.	47	4	46	0	.	158	C	118727771	T	C	118727771	3	2	142	1	0	0	0	0	1	0	0	0	14979	1821	63	2	6853	2	SPAG17	1	118727771	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	23394853	118727771	130522850	9	18087											
CTSS	1520	broad.mit.edu;bcgsc.ca	37	1	150722588	150722588	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSS	NM_004079	exon6	c.A687G	p.E229E	AGGAAGTTCAGTG	.	75	7	46	0	.	90	C	150722588	T	C	150722588	2	2	142	1	0	0	0	0	0	0	0	1	4041	1722	60	2		2	CTSS	1	150722588	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	31994817	150722588	98528033	10	18088											
CELF3	11189	ucsc.edu;bcgsc.ca	37	1	151681762	151681762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CELF3	NM_007185	exon4	c.A340G	p.M114V	CAAACATCTTCCG	.	43	5	30	0	.	91	C	151681762	T	C	151681762	3	2	142	1	0	0	0	0	1	0	0	0	3217	1435	50	2	1093	2	CELF3	1	151681762	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	959174	151681762	97568859	11	18089											
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325802	158325802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CD1E	NM_030893	exon4	c.G811A	p.A271T	CTCCGAGCAACCC	.	128	41	92	0	.	93	A	158325802	G	A	158325802	3	1	142	1	0	0	0	0	1	0	0	0	2978	971	34	3	825	3	CD1E	1	158325802	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	6644040	158325802	90924819	12	18090											
SPTA1	6708	broad.mit.edu;bcgsc.ca	37	1	158619678	158619678	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPTA1	NM_003126	exon25	c.G3537T	p.L1179L	ACTGCCCAGCAGC	.	178	14	89	1	.	142	A	158619678	C	A	158619678	2	1	142	1	0	0	0	0	0	0	0	1	15115	581	21	3		3	SPTA1	1	158619678	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	293876	158619678	90630943	13	18091											
PFDN2	5202	ucsc.edu;bcgsc.ca	37	1	161071839	161071839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PFDN2	NM_012394	exon3	c.A287G	p.Q96R	CTCACCTGCTCCT	.	45	5	28	0	.	90	C	161071839	T	C	161071839	3	2	142	1	0	0	0	0	1	0	0	0	11756	1594	55	2	185	2	PFDN2	1	161071839	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	2452161	161071839	88178782	14	18092											
DUSP27	92235	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096471	167096471	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP27	NM_001080426	exon5	c.C2103A	p.S701S	AACCTCCAACCCC	.	29	6	38	1	.	71	A	167096471	C	A	167096471	2	1	142	1	0	0	0	0	0	0	0	1	4824	581	21	3		3	DUSP27	1	167096471	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	6024632	167096471	82154150	15	18093											
QSOX1	5768	ucsc.edu;bcgsc.ca	37	1	180158782	180158782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	QSOX1	NM_002826	exon9	c.T1113A	p.F371L	TTTCTTTAAAACT	.	34	4	29	0	.	91	A	180158782	T	A	180158782	3	1	142	1	0	0	0	0	1	0	0	0	12883	1751	61	4	1147	4	QSOX1	1	180158782	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	13062311	180158782	69091839	16	18094											
DHX9	1660	ucsc.edu;bcgsc.ca	37	1	182849641	182849641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX9	NM_001357	exon22	c.C2522T	p.A841V	TTGATGCATTAGA	.	40	5	79	0	.	92	T	182849641	C	T	182849641	3	4	142	1	0	0	0	0	1	0	0	0	4516	710	25	3	2604	3	DHX9	1	182849641	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2690859	182849641	66400980	17	18095											
CFHR5	81494	ucsc.edu;bcgsc.ca	37	1	196965240	196965240	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CFHR5	NM_030787	exon6	c.C879A	p.V293V	TTCAGTCGAGGTG	.	38	4	43	0	.	154	A	196965240	C	A	196965240	2	1	142	1	0	0	0	0	0	0	0	1	3288	871	31	1		1	CFHR5	1	196965240	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	14115599	196965240	52285381	18	18096											
USH2A	7399	ucsc.edu;bcgsc.ca	37	1	216462747	216462747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USH2A	NM_007123	exon11	c.A1846G	p.N616D	CACAGTTCCTTCC	.	38	4	57	0	.	115	C	216462747	T	C	216462747	3	2	142	1	0	0	0	0	1	0	0	0	17033	1783	62	2	14024	2	USH2A	1	216462747	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	19497507	216462747	32787874	19	18097											
RAB3GAP2	25782	ucsc.edu;bcgsc.ca	37	1	220364460	220364460	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAB3GAP2	NM_012414	exon14	c.C1437T	p.S479S	CTGTGTGCTCCAC	.	49	4	60	0	.	90	A	220364460	G	A	220364460	2	1	142	1	0	0	0	0	0	0	0	1	12936	1310	46	3		3	RAB3GAP2	1	220364460	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	3901713	220364460	28886161	20	18098											
NUP133	55746	ucsc.edu;bcgsc.ca	37	1	229580661	229580661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP133	NM_018230	exon25	c.G3334T	p.G1112C	ACTTACCATCTTT	.	34	4	49	0	.	271	A	229580661	C	A	229580661	3	1	142	1	0	0	0	0	1	0	0	0	10754	608	21	3	144	3	NUP133	1	229580661	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	9216201	229580661	19669960	21	18099											
KIAA1804	0	ucsc.edu;bcgsc.ca	37	1	233489583	233489583	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1804	NM_032435	exon3	c.C1017A	p.T339T	GCTCACCGGAGAA	.	54	5	83	0	.	523	A	233489583	C	A	233489583	2	1	142	1	0	0	0	0	0	0	0	1	8259	639	23	1		1	KIAA1804	1	233489583	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3908922	233489583	15761038	22	18100											
SDCCAG8	10806	ucsc.edu;bcgsc.ca	37	1	243471320	243471320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDCCAG8	NM_006642	exon8	c.G770T	p.C257F	GAACTTGTGAAGA	.	47	4	70	0	.	90	T	243471320	G	T	243471320	3	4	142	1	0	0	0	0	1	0	0	0	13959	1377	48	3	800	3	SDCCAG8	1	243471320	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	9981737	243471320	5779301	23	18101											
HADHB	3032	ucsc.edu;bcgsc.ca	37	2	26502181	26502181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HADHB	NM_000183	exon9	c.C809A	p.P270Q	AAGTACCAGGTGA	.	32	4	30	0	.	154	A	26502181	C	A	26502181	3	1	142	1	0	0	0	0	1	0	0	0	6944	594	21	3	839	3	HADHB	2	26502181	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10		26502181	216697192	24	18102											
DPYSL5	56896	ucsc.edu;bcgsc.ca	37	2	27162930	27162930	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPYSL5	NM_001253724	exon9	c.C979A	p.R327R	GATCACCGGCCTT	.	69	6	74	0	.	92	A	27162930	C	A	27162930	2	1	142	1	0	0	0	0	0	0	0	1	4750	643	23	1		1	DPYSL5	2	27162930	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	660749	27162930	216036443	25	18103											
RASGRP3	25780	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33752434	33752434	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RASGRP3	NM_170672	exon11	c.C1038A	p.A346A	GAATGCCTCTCAC	.	26	5	19	0	.	661	A	33752434	C	A	33752434	2	1	142	1	0	0	0	0	0	0	0	1	13076	668	24	3		3	RASGRP3	2	33752434	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	6589504	33752434	209446939	26	18104											
SLC8A1	6546	ucsc.edu;bcgsc.ca	37	2	40657282	40657282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC8A1	NM_001252624	exon1	c.G139T	p.G47C	ATTCACCAGTTTC	.	81	8	58	0	.	93	A	40657282	C	A	40657282	3	1	142	1	0	0	0	0	1	0	0	0	14706	594	21	3	2930	3	SLC8A1	2	40657282	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	6904848	40657282	202542091	27	18105											
EML4	27436	broad.mit.edu;bcgsc.ca	37	2	42490410	42490410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EML4	NM_019063	exon5	c.C605A	p.P202H	CAACACCCAAATT	.	184	10	149	0	.	3734	A	42490410	C	A	42490410	3	1	142	1	0	0	0	0	1	0	0	0	5099	623	22	3	623	3	EML4	2	42490410	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	1833128	42490410	200708963	28	18106											
PLEKHH2	130271	broad.mit.edu;bcgsc.ca	37	2	43919652	43919652	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEKHH2	NM_172069	exon4	c.187-1G>T	.	AATTTAGGTACAA	.	122	8	110	0	.	92	T	43919652	G	T	43919652	5	4	142	1	0	0	0	0	0	0	1	0	12077	1014	35	3	196	3	PLEKHH2	2	43919652	Splice_Site	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	1429242	43919652	199279721	29	18107											
EFEMP1	2202	broad.mit.edu;bcgsc.ca	37	2	56104946	56104946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EFEMP1	NM_001039349	exon6	c.C695A	p.P232Q	GAGCCTGGTGTAT	.	86	7	70	1	.	520	T	56104946	G	T	56104946	3	4	142	1	0	0	0	0	1	0	0	0	4941	1348	47	3	810	3	EFEMP1	2	56104946	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	12185294	56104946	187094427	30	18108											
PROKR1	10887	ucsc.edu;bcgsc.ca	37	2	68882573	68882573	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PROKR1	NM_138964	exon2	c.C1047A	p.T349T	CGACACCGTCAAG	.	48	5	60	0	.	523	A	68882573	C	A	68882573	2	1	142	1	0	0	0	0	0	0	0	1	12552	639	23	1		1	PROKR1	2	68882573	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	12777627	68882573	174316800	31	18109											
ZNF638	27332	ucsc.edu;bcgsc.ca	37	2	71577282	71577282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF638	NM_014497	exon2	c.G1198A	p.D400N	CATGCTGATGCCC	.	37	4	48	0	.	94	A	71577282	G	A	71577282	3	1	142	1	0	0	0	0	1	0	0	0	18052	1290	45	3	1200	3	ZNF638	2	71577282	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	2694709	71577282	171622091	32	18110											
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110959033	110959033	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP1	NM_207181	exon2	c.T108C	p.A36A	TTCTAGAGCTTCT	.	93	42	68	0	.	92	G	110959033	A	G	110959033	2	3	142	1	0	0	0	0	0	0	0	1	10579	291	11	2		2	NPHP1	2	110959033	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	39381751	110959033	132240340	33	18111											
TFCP2L1	29842	ucsc.edu;bcgsc.ca	37	2	121995248	121995248	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFCP2L1	NM_014553	exon10	c.T954C	p.L318L	GCGGTGAAGCCAC	.	30	4	39	0	.	93	G	121995248	A	G	121995248	2	3	142	1	0	0	0	0	0	0	0	1	15793	233	9	2		2	TFCP2L1	2	121995248	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	11036215	121995248	121204125	34	18112											
ZRANB3	84083	ucsc.edu;bcgsc.ca	37	2	136029433	136029433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZRANB3	NM_032143	exon10	c.A1111G	p.S371G	AAACACTTCCATC	.	37	4	31	0	.	658	C	136029433	T	C	136029433	3	2	142	1	0	0	0	0	1	0	0	0	18221	1609	56	2	2176	2	ZRANB3	2	136029433	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	14034185	136029433	107169940	35	18113											
FMNL2	114793	ucsc.edu;bcgsc.ca	37	2	153475551	153475551	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FMNL2	NM_052905	exon14	c.G1506A	p.L502L	CACATTGTCCATG	.	47	4	48	0	.	516	A	153475551	G	A	153475551	2	1	142	1	0	0	0	0	0	0	0	1	5952	1368	48	3		3	FMNL2	2	153475551	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	17446118	153475551	89723822	36	18114											
CERKL	375298	ucsc.edu;bcgsc.ca	37	2	182423419	182423419	+	Missense_Mutation	SNP	C	C	T	rs78484040	by1000genomes	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CERKL	NM_001030311	exon6	c.G772A	p.G258R	CATCTCCACCAAC	.	38	4	32	0	C|0.999;T|0.000	228	T	182423419	C	T	182423419	3	4	142	1	0	0	0	0	1	0	0	0	3268	603	21	3	940	3	CERKL	2	182423419	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	28947868	182423419	60775954	37	18115											
PARD3B	117583	ucsc.edu;bcgsc.ca	37	2	205989190	205989190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARD3B	NM_205863	exon9	c.G1305T	p.E435D	TTTGGAGGTAAGA	.	43	4	40	0	.	140	T	205989190	G	T	205989190	3	4	142	1	0	0	0	0	1	0	0	0	11444	1014	35	3	1339	3	PARD3B	2	205989190	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	23565771	205989190	37210183	38	18116											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212615384	212615384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERBB4	NM_001042599	exon5	c.C602A	p.T201K	TTTTCTGTGGGTC	.	51	24	32	0	.	1461	T	212615384	G	T	212615384	3	4	142	1	0	0	0	0	1	0	0	0	5209	1377	48	3	3420	3	ERBB4	2	212615384	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	6626194	212615384	30583989	39	18117											
GMPPA	29926	ucsc.edu;bcgsc.ca	37	2	220371496	220371496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GMPPA	NM_205847	exon13	c.C1239A	p.S413R	CCGAAGCTTCACC	.	22	6	36	0	.	90	A	220371496	C	A	220371496	3	1	142	1	0	0	0	0	1	0	0	0	6494	796	28	3	1285	3	GMPPA	2	220371496	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	7756112	220371496	22827877	40	18118											
PASK	23178	ucsc.edu;bcgsc.ca	37	2	242066022	242066022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PASK	NM_015148	exon10	c.C2308T	p.P770S	AAGAGGGTGTCTC	.	61	5	88	0	.	536	A	242066022	G	A	242066022	3	1	142	1	0	0	0	0	1	0	0	0	11472	1261	44	3	1699	3	PASK	2	242066022	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	21694526	242066022	1133351	41	18119											
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18456693	18456693	+	Silent	SNP	T	T	C	rs61733671		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SATB1	NM_002971	exon5	c.A549G	p.Q183Q	CGACCATTGTTCG	.	105	41	104	0	T|0.987;C|0.013	228	C	18456693	T	C	18456693	2	2	142	1	0	0	0	0	0	0	0	1	13853	1490	52	2		2	SATB1	3	18456693	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		18456693	179565737	42	18120											
SUSD5	26032	ucsc.edu;bcgsc.ca	37	3	33195198	33195198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUSD5	NM_015551	exon5	c.A926G	p.E309G	TCCACCTCCTTTT	.	42	5	56	0	.	24	C	33195198	T	C	33195198	3	2	142	1	0	0	0	0	1	0	0	0	15408	1551	54	2	967	2	SUSD5	3	33195198	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	14738505	33195198	164827232	43	18121											
GORASP1	64689	ucsc.edu;bcgsc.ca	37	3	39140363	39140363	+	Missense_Mutation	SNP	A	A	G	rs140610726	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GORASP1	NM_031899	exon8	c.T938C	p.I313T	AGAGAAATTCCCG	.	47	4	74	0	A|0.999;C|0.000	92	G	39140363	A	G	39140363	3	3	142	1	0	0	0	0	1	0	0	0	6575	101	4	2	392	2	GORASP1	3	39140363	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	5945165	39140363	158882067	44	18122											
CCDC13	152206	ucsc.edu;bcgsc.ca	37	3	42750572	42750572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC13	NM_144719	exon16	c.G2048T	p.R683L	TTTCCCCGCAGGG	.	34	5	62	0	.	91	A	42750572	C	A	42750572	3	1	142	1	0	0	0	0	1	0	0	0	2765	652	23	1	103	1	CCDC13	3	42750572	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3610209	42750572	155271858	45	18123											
SEMA3F	6405	ucsc.edu;bcgsc.ca	37	3	50211496	50211496	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA3F	NM_004186	exon4	c.A285G	p.A95A	CTGGGCAGCCTCC	.	31	4	29	0	.	279	G	50211496	A	G	50211496	2	3	142	1	0	0	0	0	0	0	0	1	14029	175	7	2		2	SEMA3F	3	50211496	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	7460924	50211496	147810934	46	18124											
HYAL1	3373	ucsc.edu;bcgsc.ca	37	3	50340219	50340219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HYAL1	NM_033159	exon2	c.G169T	p.D57Y	CCACATCGAAGAC	.	44	4	61	0	.	278	A	50340219	C	A	50340219	3	1	142	1	0	0	0	0	1	0	0	0	7463	884	31	1	1150	1	HYAL1	3	50340219	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	128723	50340219	147682211	47	18125											
PCBP4	57060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51993962	51993962	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCBP4	NM_033008	exon7	c.G465A	p.V155V	ATCAGGCACCCCA	.	18	4	24	0	.	226	T	51993962	C	T	51993962	2	4	142	1	0	0	0	0	0	0	0	1	11503	697	25	3		3	PCBP4	3	51993962	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	1653743	51993962	146028468	48	18126											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52513791	52513791	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NISCH	NM_001276293	exon12	c.A1329G	p.T443T	GACCACAGAGAAG	.	91	42	74	0	.	93	G	52513791	A	G	52513791	2	3	142	1	0	0	0	0	0	0	0	1	10432	175	7	2		2	NISCH	3	52513791	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	519829	52513791	145508639	49	18127											
TKT	7086	ucsc.edu;bcgsc.ca	37	3	53259913	53259913	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TKT	NM_001258028	exon15	c.G1755T	p.V585V	CTCGCCCACTACT	.	36	4	42	0	.	92	A	53259913	C	A	53259913	2	1	142	1	0	0	0	0	0	0	0	1	15931	581	21	3		3	TKT	3	53259913	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	746122	53259913	144762517	50	18128											
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	61975392	61975392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRG	NM_002841	exon3	c.T284C	p.V95A	CGCGTGTTGGGGA	.	87	37	81	0	.	419	C	61975392	T	C	61975392	3	2	142	1	0	0	0	0	1	0	0	0	12802	1725	60	2	294	2	PTPRG	3	61975392	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	8715479	61975392	136047038	51	18129											
BOC	91653	broad.mit.edu;ucsc.edu	37	3	112991401	112991401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BOC	NM_033254	exon7	c.T812C	p.V271A	CCAGTGTCACCGG	.	63	7	84	1	.	157	C	112991401	T	C	112991401	3	2	142	1	0	0	0	0	1	0	0	0	1481	1667	58	2	830	2	BOC	3	112991401	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	51016009	112991401	85031029	52	18130											
KBTBD12	166348	ucsc.edu;bcgsc.ca	37	3	127682104	127682104	+	Missense_Mutation	SNP	C	C	A	rs149769275	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KBTBD12	NM_207335	exon4	c.C1565A	p.P522Q	ACAACCCAGATGG	.	48	4	42	0	C|1.000;T|0.000	23	A	127682104	C	A	127682104	3	1	142	1	0	0	0	0	1	0	0	0	7991	594	21	3	1579	3	KBTBD12	3	127682104	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	14690703	127682104	70340326	53	18131											
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138219253	138219253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP70	NM_024491	exon15	c.C1525T	p.L509F	CTAAGAGTTCTTG	.	196	76	120	0	.	69	A	138219253	G	A	138219253	3	1	142	1	0	0	0	0	1	0	0	0	3259	1029	36	3	284	3	CEP70	3	138219253	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	10537149	138219253	59803177	54	18132											
TFDP2	7029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	141678612	141678612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFDP2	NM_001178139	exon11	c.G955T	p.G319X	ACATTCCCATCCG	.	60	26	68	0	.	226	A	141678612	C	A	141678612	4	1	142	1	0	0	0	0	0	1	0	0	15795	632	22	3	397	3	TFDP2	3	141678612	Nonsense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3459359	141678612	56343818	55	18133	100	2									
TFDP2	7029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141678613	141678613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFDP2	NM_001178139	exon11	c.G954T	p.M318I	CATTCCCATCCGC	.	60	28	71	0	.	226	A	141678613	C	A	141678613	3	1	142	1	0	0	0	0	1	0	0	0	15795	594	21	3	398	3	TFDP2	3	141678613	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	1	141678613	56343817	56	18134	100	2									
AADAC	13	ucsc.edu;bcgsc.ca	37	3	151545758	151545758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AADAC	NM_001086	exon5	c.C998A	p.P333H	GCTTACCCCTGAC	.	45	4	53	0	.	280	A	151545758	C	A	151545758	3	1	142	1	0	0	0	0	1	0	0	0	10	623	22	3	1016	3	AADAC	3	151545758	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	9867145	151545758	46476672	57	18135											
SUCNR1	56670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151598552	151598552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUCNR1	NM_033050	exon3	c.G221T	p.C74F	TTCTGTGCACCCT	.	162	59	142	0	.	711	T	151598552	G	T	151598552	3	4	142	1	0	0	0	0	1	0	0	0	15365	1319	46	3	227	3	SUCNR1	3	151598552	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	52794	151598552	46423878	58	18136											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178916692	178916692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIK3CA	NM_006218	exon2	c.C79A	p.P27T	TTACTACCAAATG	.	80	38	74	0	.	27752	A	178916692	C	A	178916692	3	1	142	1	0	0	0	0	1	0	0	0	11913	507	18	3	81	3	PIK3CA	3	178916692	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	27318140	178916692	19105738	59	18137											
MAEA	10296	ucsc.edu;bcgsc.ca	37	4	1321427	1321427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAEA	NM_001017405	exon5	c.T592C	p.F198L	CTGGAGTTCAGCC	.	21	4	32	0	.	91	C	1321427	T	C	1321427	3	2	142	1	0	0	0	0	1	0	0	0	9153	1725	60	2	610	2	MAEA	4	1321427	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		1321427	189832849	60	18138											
MAN2B2	23324	ucsc.edu;bcgsc.ca	37	4	6611693	6611693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAN2B2	NM_015274	exon13	c.C2175A	p.S725R	AAACAGCCAGCAG	.	36	4	98	0	.	92	A	6611693	C	A	6611693	3	1	142	1	0	0	0	0	1	0	0	0	9217	738	26	3	2225	3	MAN2B2	4	6611693	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	5290266	6611693	184542583	61	18139											
SLIT2	9353	ucsc.edu;bcgsc.ca	37	4	20570613	20570613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLIT2	NM_004787	exon29	c.C3074A	p.P1025Q	TTTGCCCACCTGA	.	37	4	48	0	.	521	A	20570613	C	A	20570613	3	1	142	1	0	0	0	0	1	0	0	0	14740	594	21	3	3188	3	SLIT2	4	20570613	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	13958920	20570613	170583663	62	18140											
OCIAD1	54940	broad.mit.edu;bcgsc.ca	37	4	48862751	48862751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OCIAD1	NM_001168254	exon9	c.A725G	p.N242S	AAGTAAACAAGTA	.	69	5	118	0	.	68	G	48862751	A	G	48862751	3	3	142	1	0	0	0	0	1	0	0	0	10817	43	2	2	776	2	OCIAD1	4	48862751	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	28292138	48862751	142291525	63	18141											
PPEF2	5470	ucsc.edu;bcgsc.ca	37	4	76809470	76809470	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPEF2	NM_006239	exon6	c.T429C	p.A143A	GTAGCGAGCATGG	.	36	4	45	1	.	228	G	76809470	A	G	76809470	2	3	142	1	0	0	0	0	0	0	0	1	12308	291	11	2		2	PPEF2	4	76809470	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	27946719	76809470	114344806	64	18142											
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77357245	77357245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHROOM3	NM_020859	exon1	c.A40G	p.T14A	AGTGCCACATTAA	.	88	42	109	0	.	93	G	77357245	A	G	77357245	3	3	142	1	0	0	0	0	1	0	0	0	14295	159	6	2	42	2	SHROOM3	4	77357245	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	547775	77357245	113797031	65	18143											
SLC10A7	84068	ucsc.edu;bcgsc.ca	37	4	147204345	147204345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC10A7	NM_001029998	exon10	c.G846T	p.L282F	CTTACCCAATGTA	.	49	5	41	0	.	22	A	147204345	C	A	147204345	3	1	142	1	0	0	0	0	1	0	0	0	14379	608	21	3	188	3	SLC10A7	4	147204345	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	69847100	147204345	43949931	66	18144											
NR3C2	4306	ucsc.edu;bcgsc.ca	37	4	149181131	149181131	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NR3C2	NM_001166104	exon3	c.A1896G	p.E632E	TTTACCTTCCACT	.	57	5	49	0	.	154	C	149181131	T	C	149181131	2	2	142	1	0	0	0	0	0	0	0	1	10631	1623	56	2		2	NR3C2	4	149181131	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1976786	149181131	41973145	67	18145											
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	240575	240575	+	Missense_Mutation	SNP	G	G	T	rs192818312	by1000genomes;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDHA	NM_004168	exon11	c.G1535T	p.R512L	AACTGCGACTCAG	.	157	67	176	0	G|0.999;A|0.001	226	T	240575	G	T	240575	3	4	142	1	0	0	0	0	1	0	0	0	13963	1058	37	1	1577	1	SDHA	5	240575	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		240575	180674685	68	18146											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72189531	72189532	+	Splice_Site	INS	-	-	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNPO1	NM_002270	exon18	c.2143+1->T	.	GTATAGGTATGAA	.	74	35	81	0	.	228	T	72189532	-	T	72189531	8	5	142	1	0	1	1	0	0	0	1	0	16332	1275	44	0	2214	0	TNPO1	5	72189531	Splice_Site	INS	-	TCGA-G3-A25U-01A-11D-A16V-10	71948956	72189531	108725729	69	18147											
FBN2	2201	ucsc.edu;bcgsc.ca	37	5	127712541	127712541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBN2	NM_001999	exon14	c.G1855T	p.D619Y	ATTCATCATGATC	.	46	4	37	0	.	146	A	127712541	C	A	127712541	3	1	142	1	0	0	0	0	1	0	0	0	5703	826	29	3	7091	3	FBN2	5	127712541	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	55523010	127712541	53202719	70	18148											
PPP2CA	5515	ucsc.edu;bcgsc.ca	37	5	133536762	133536762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CA	NM_002715	exon4	c.T490C	p.F164L	GACAGAAGATCTG	.	41	4	33	0	.	1085	G	133536762	A	G	133536762	3	3	142	1	0	0	0	0	1	0	0	0	12380	72	3	2	455	2	PPP2CA	5	133536762	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	5824221	133536762	47378498	71	18149											
PCDHGA12	26025	ucsc.edu;bcgsc.ca	37	5	140810434	140810434	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHGA12	NM_032094	exon1	c.G108T	p.P36P	AGTTCCGGAAGAG	.	52	4	56	0	.	27	T	140810434	G	T	140810434	2	4	142	1	0	0	0	0	0	0	0	1	11553	1103	39	1		1	PCDHGA12	5	140810434	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	7273672	140810434	40104826	72	18150											
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160972296	160972296	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRB2	NM_021911	exon4	c.C174T	p.P58P	CACGGGGGGACCT	.	60	26	53	0	.	91	A	160972296	G	A	160972296	2	1	142	1	0	0	0	0	0	0	0	1	6167	1219	43	3		3	GABRB2	5	160972296	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	20161862	160972296	19942964	73	18151											
SLC34A1	6569	ucsc.edu;bcgsc.ca	37	5	176821189	176821189	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC34A1	NM_003052	exon10	c.C1167A	p.I389I	GGTCATCAATACG	.	44	4	56	0	.	91	A	176821189	C	A	176821189	2	1	142	1	0	0	0	0	0	0	0	1	14567	816	29	3		3	SLC34A1	5	176821189	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	15848893	176821189	4094071	74	18152											
DDX41	51428	ucsc.edu;bcgsc.ca	37	5	176939387	176939387	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX41	NM_016222	exon15	c.G1557T	p.R519R	GCCAATCCGGTGT	.	25	4	40	0	.	226	A	176939387	C	A	176939387	2	1	142	1	0	0	0	0	0	0	0	1	4361	842	30	3		3	DDX41	5	176939387	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	118198	176939387	3975873	75	18153											
CAP2	10486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17463259	17463259	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAP2	NM_006366	exon4	c.G255A	p.Q85Q	GGCCCAGCGGGCT	.	64	34	49	0	.	91	A	17463259	G	A	17463259	2	1	142	1	0	0	0	0	0	0	0	1	2620	962	34	3		3	CAP2	6	17463259	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		17463259	153651808	76	18154											
DEF6	50619	ucsc.edu;bcgsc.ca	37	6	35289121	35289121	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEF6	NM_022047	exon11	c.G1830T	p.G610G	TGGTGGGGATGAG	.	29	4	41	0	.	227	T	35289121	G	T	35289121	2	4	142	1	0	0	0	0	0	0	0	1	4386	1219	43	3		3	DEF6	6	35289121	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	17825862	35289121	135825946	77	18155											
PI16	221476	ucsc.edu;bcgsc.ca	37	6	36926948	36926948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PI16	NM_001199159	exon3	c.G199T	p.A67S	GCCTTCGCCAAGG	.	38	4	47	0	.	90	T	36926948	G	T	36926948	3	4	142	1	0	0	0	0	1	0	0	0	11869	1087	38	1	205	1	PI16	6	36926948	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	1637827	36926948	134188119	78	18156											
DNAH8	1769	ucsc.edu;bcgsc.ca	37	6	38690904	38690904	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH8	NM_001206927	exon2	c.C319A	p.R107R	TCTTCCCGGAGGT	.	60	6	41	0	.	615	A	38690904	C	A	38690904	2	1	142	1	0	0	0	0	0	0	0	1	4607	667	23	1		1	DNAH8	6	38690904	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	1763956	38690904	132424163	79	18157											
GUCA1B	2979	ucsc.edu;bcgsc.ca	37	6	42152641	42152641	+	Missense_Mutation	SNP	C	C	T	rs141880594		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GUCA1B	NM_002098	exon4	c.G515A	p.R172Q	TTGTCCCGACGGG	.	32	4	41	1	C|1.000;T|0.000	92	T	42152641	C	T	42152641	3	4	142	1	0	0	0	0	1	0	0	0	6889	652	23	1	91	1	GUCA1B	6	42152641	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3461737	42152641	128962426	80	18158											
TRAM2	9697	ucsc.edu;bcgsc.ca	37	6	52373071	52373071	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRAM2	NM_012288	exon6	c.G516T	p.L172L	TGCGTGCAGCCAG	.	32	4	23	0	.	90	A	52373071	C	A	52373071	2	1	142	1	0	0	0	0	0	0	0	1	16450	697	25	3		3	TRAM2	6	52373071	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	10220430	52373071	118741996	81	18159											
MICAL1	64780	ucsc.edu;bcgsc.ca	37	6	109771587	109771587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MICAL1	NM_022765	exon8	c.G1107A	p.M369I	CCGCATCATGCTC	.	41	4	43	0	.	154	T	109771587	C	T	109771587	3	4	142	1	0	0	0	0	1	0	0	0	9569	826	29	3	2168	3	MICAL1	6	109771587	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	57398516	109771587	61343480	82	18160											
GJA1	2697	broad.mit.edu;bcgsc.ca	37	6	121768405	121768405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GJA1	NM_000165	exon2	c.G412T	p.G138C	AAGTACGGTATTG	.	109	9	125	1	.	92	T	121768405	G	T	121768405	3	4	142	1	0	0	0	0	1	0	0	0	6400	1116	39	1	414	1	GJA1	6	121768405	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	11996818	121768405	49346662	83	18161											
ARID1B	57492	ucsc.edu;bcgsc.ca	37	6	157502181	157502181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID1B	NM_020732	exon12	c.T3214A	p.W1072R	AAGCTCTGGGTCG	.	34	4	25	0	.	154	A	157502181	T	A	157502181	3	1	142	1	0	0	0	0	1	0	0	0	914	1580	55	4	3260	4	ARID1B	6	157502181	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	35733776	157502181	13612886	84	18162											
TULP4	56995	bcgsc.ca;mdanderson.org	37	6	158923495	158923495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP4	NM_020245	exon13	c.G2800T	p.V934F	AAGAAGGTCCCTC	.	36	17	43	2	.	91	T	158923495	G	T	158923495	3	4	142	1	0	0	0	0	1	0	0	0	16773	1261	44	3	2850	3	TULP4	6	158923495	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	1421314	158923495	12191572	85	18163											
FSCN1	6624	ucsc.edu;bcgsc.ca	37	7	5643635	5643635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FSCN1	NM_003088	exon4	c.T1253C	p.F418S	TGGAGTTCAACGA	.	33	4	27	0	.	91	C	5643635	T	C	5643635	3	2	142	1	0	0	0	0	1	0	0	0	6067	1783	62	2	1267	2	FSCN1	7	5643635	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		5643635	153495028	86	18164											
THSD7A	221981	broad.mit.edu;bcgsc.ca	37	7	11675947	11675947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THSD7A	NM_015204	exon2	c.G832T	p.G278W	TCTTCCCGCGTCT	.	140	7	101	0	.	71	A	11675947	C	A	11675947	3	1	142	1	0	0	0	0	1	0	0	0	15876	652	23	1	4245	1	THSD7A	7	11675947	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	6032312	11675947	147462716	87	18165											
STARD3NL	83930	broad.mit.edu;bcgsc.ca	37	7	38253999	38253999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STARD3NL	NM_032016	exon3	c.G267A	p.M89I	GGTGATGCAGTAT	.	100	6	71	0	.	91	A	38253999	G	A	38253999	3	1	142	1	0	0	0	0	1	0	0	0	15257	1319	46	3	273	3	STARD3NL	7	38253999	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	26578052	38253999	120884664	88	18166											
TMED4	222068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44621075	44621075	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMED4	NM_182547	exon3	c.G360A	p.R120R	AGCCATCCTGGTA	.	18	10	25	0	.	90	T	44621075	C	T	44621075	2	4	142	1	0	0	0	0	0	0	0	1	16003	854	30	3		3	TMED4	7	44621075	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	6367076	44621075	114517588	89	18167											
CLIP2	7461	ucsc.edu;bcgsc.ca	37	7	73753180	73753180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLIP2	NM_032421	exon3	c.C524A	p.T175K	CGGGCACGGCCAC	.	24	4	28	0	.	93	A	73753180	C	A	73753180	3	1	142	1	0	0	0	0	1	0	0	0	3533	536	19	1	530	1	CLIP2	7	73753180	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	29132105	73753180	85385483	90	18168											
MAGI2	9863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	77649287	77649287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGI2	NM_012301	exon22	c.C3713A	p.P1238H	GGGGCGGGTTCGT	.	16	6	26	0	.	461	T	77649287	G	T	77649287	3	4	142	1	0	0	0	0	1	0	0	0	9191	1232	43	3	658	3	MAGI2	7	77649287	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	3896107	77649287	81489376	91	18169											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963115	88963115	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF804B	NM_181646	exon4	c.A819G	p.T273T	AGATACACACCTT	.	109	54	119	0	.	101	G	88963115	A	G	88963115	2	3	142	1	0	0	0	0	0	0	0	1	18168	146	6	2		2	ZNF804B	7	88963115	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	11313828	88963115	70175548	92	18170											
CALCR	799	broad.mit.edu;bcgsc.ca	37	7	93072939	93072939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALCR	NM_001164737	exon11	c.G881T	p.R294L	TACCACCGCAAGC	.	84	6	68	0	.	664	A	93072939	C	A	93072939	3	1	142	1	0	0	0	0	1	0	0	0	2579	652	23	1	669	1	CALCR	7	93072939	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	4109824	93072939	66065724	93	18171											
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99247719	99247721	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP3A5	NM_000777	exon12	c.1388_1390del	p.463_464del	GTTTGAAGGAGAA	.	172	69	192	0	.	90	-	99247721	AGG	-	99247719	7	5	142	1	0	1	0	1	0	0	0	0	4180	72	3	0	126	0	CYP3A5	7	99247719	In_Frame_Del	DEL	AGG	TCGA-G3-A25U-01A-11D-A16V-10	6174780	99247719	59890944	94	18172											
GIMAP7	168537	ucsc.edu;bcgsc.ca	37	7	150217195	150217195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GIMAP7	NM_153236	exon2	c.A133G	p.K45E	GTTACCAAGAACT	.	44	4	34	0	.	228	G	150217195	A	G	150217195	3	3	142	1	0	0	0	0	1	0	0	0	6384	131	5	2	135	2	GIMAP7	7	150217195	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	50969476	150217195	8921468	95	18173											
DEFA6	1671	ucsc.edu;bcgsc.ca	37	8	6782381	6782381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEFA6	NM_001926	exon2	c.T262C	p.C88R	CAGTGCAGGTCCC	.	52	5	53	0	.	90	G	6782381	A	G	6782381	3	3	142	1	0	0	0	0	1	0	0	0	4393	188	7	2	44	2	DEFA6	8	6782381	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10		6782381	139581641	96	18174											
DOCK5	80005	ucsc.edu;bcgsc.ca	37	8	25174644	25174644	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK5	NM_024940	exon14	c.G1440A	p.L480L	GCTCTTGGAGGTG	.	46	4	48	0	.	71	A	25174644	G	A	25174644	2	1	142	1	0	0	0	0	0	0	0	1	4690	1339	47	3		3	DOCK5	8	25174644	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	18392263	25174644	121189378	97	18175											
PPP2CB	5516	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	30643819	30643819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CB	NM_001009552	exon7	c.C862T	p.Q288X	CAAATTGAAGGCT	.	38	12	36	0	.	658	A	30643819	G	A	30643819	4	1	142	1	0	0	0	0	0	1	0	0	12381	1299	45	3	71	3	PPP2CB	8	30643819	Nonsense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	5469175	30643819	115720203	98	18176											
RNF122	79845	ucsc.edu;bcgsc.ca	37	8	33416214	33416214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF122	NM_024787	exon2	c.C101A	p.P34Q	TTGAGCGGAAGGT	.	45	4	56	0	.	226	T	33416214	G	T	33416214	3	4	142	1	0	0	0	0	1	0	0	0	13432	1116	39	1	386	1	RNF122	8	33416214	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	2772395	33416214	112947808	99	18177											
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36763242	36763242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon20	c.G2026A	p.V676I	CATGATGTAGAAC	.	36	4	34	0	.	23	A	36763242	G	A	36763242	3	1	142	1	0	0	0	0	1	0	0	0	8093	1377	48	3	2104	3	KCNU1	8	36763242	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	3347028	36763242	109600780	100	18178											
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36776402	36776402	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon23	c.C2583A	p.I861I	CCCTATCCTTACT	.	44	5	37	0	.	23	A	36776402	C	A	36776402	2	1	142	1	0	0	0	0	0	0	0	1	8093	845	30	3		3	KCNU1	8	36776402	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	13160	36776402	109587620	101	18179											
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139736874	139736874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL22A1	NM_152888	exon25	c.G2231A	p.G744E	GGAGGTCCAGGCT	.	25	11	19	0	.	103	T	139736874	C	T	139736874	3	4	142	1	0	0	0	0	1	0	0	0	3681	855	30	3	2813	3	COL22A1	8	139736874	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	102960472	139736874	6627148	102	18180											
DENND4C	55667	broad.mit.edu;bcgsc.ca	37	9	19360349	19360349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DENND4C	NM_017925	exon28	c.G5121T	p.Q1707H	TGATCAGGTGATT	.	168	8	117	1	.	92	T	19360349	G	T	19360349	3	4	142	1	0	0	0	0	1	0	0	0	4435	991	35	3	4507	3	DENND4C	9	19360349	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		19360349	121853082	103	18181											
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101778304	101778304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL15A1	NM_001855	exon11	c.C1550T	p.P517L	AGGAGCCCCTCAT	.	51	30	34	0	.	96	T	101778304	C	T	101778304	3	4	142	1	0	0	0	0	1	0	0	0	3672	623	22	3	1592	3	COL15A1	9	101778304	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	82417955	101778304	39435127	104	18182											
KIAA1958	158405	ucsc.edu;bcgsc.ca	37	9	115337283	115337283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1958	NM_133465	exon2	c.T923C	p.M308T	TGGCCATGCAAAT	.	28	4	43	0	.	91	C	115337283	T	C	115337283	3	2	142	1	0	0	0	0	1	0	0	0	8264	1464	51	2	925	2	KIAA1958	9	115337283	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	13558979	115337283	25876148	105	18183											
SARDH	1757	ucsc.edu;bcgsc.ca	37	9	136561448	136561448	+	Silent	SNP	G	G	A	rs35013479	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SARDH	NM_007101	exon14	c.C1704T	p.A568A	CACAGCGGCGGCC	.	48	4	49	0	G|0.985;A|0.015	90	A	136561448	G	A	136561448	2	1	142	1	0	0	0	0	0	0	0	1	13841	1103	39	1		1	SARDH	9	136561448	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	21224165	136561448	4651983	106	18184											
ITGA8	8516	ucsc.edu;bcgsc.ca	37	10	15658547	15658547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGA8	NM_003638	exon14	c.G1411T	p.G471C	ATGCACCCACAAT	.	52	5	50	0	.	230	A	15658547	C	A	15658547	3	1	142	1	0	0	0	0	1	0	0	0	7882	623	22	3	1848	3	ITGA8	10	15658547	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10		15658547	119876200	107	18185											
SLC25A16	8034	ucsc.edu;bcgsc.ca	37	10	70253301	70253301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC25A16	NM_152707	exon5	c.C448T	p.P150S	CAAGAGGGTAAGT	.	44	4	82	0	.	90	A	70253301	G	A	70253301	3	1	142	1	0	0	0	0	1	0	0	0	14478	1232	43	3	570	3	SLC25A16	10	70253301	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	54594754	70253301	65281446	108	18186											
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71148962	71148962	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HK1	NM_033498	exon17	c.C1957T	p.L653L	TTTGACCTGGACG	.	57	46	162	0	.	252	T	71148962	C	T	71148962	2	4	142	1	0	0	0	0	0	0	0	1	7190	680	24	3		3	HK1	10	71148962	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	895661	71148962	64385785	109	18187											
C10orf35	219738	ucsc.edu;bcgsc.ca	37	10	71392795	71392795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf35	NM_145306	exon4	c.T346C	p.S116P	CTGGTGTCCCACC	.	58	8	112	0	.	92	C	71392795	T	C	71392795	3	2	142	1	0	0	0	0	1	0	0	0	1603	1667	58	2	352	2	C10orf35	10	71392795	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	243833	71392795	64141952	110	18188											
KCNMA1	3778	ucsc.edu;bcgsc.ca	37	10	79010979	79010979	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNMA1	NM_002247	exon3	c.T576C	p.L192L	TATTACAAGTGCA	.	33	6	54	0	.	93	G	79010979	A	G	79010979	2	3	142	1	0	0	0	0	0	0	0	1	8073	117	5	2		2	KCNMA1	10	79010979	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	7618184	79010979	56523768	111	18189											
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91469127	91469127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20B	NM_016195	exon4	c.A260G	p.Q87R	ATTCACAGACTGT	.	42	4	87	0	.	93	G	91469127	A	G	91469127	3	3	142	1	0	0	0	0	1	0	0	0	8287	188	7	2	270	2	KIF20B	10	91469127	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	12458148	91469127	44065620	112	18190											
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91469218	91469218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20B	NM_016195	exon4	c.G351T	p.K117N	TTCCAAGGTAAAA	.	42	4	70	0	.	93	T	91469218	G	T	91469218	3	4	142	1	0	0	0	0	1	0	0	0	8287	1014	35	3	361	3	KIF20B	10	91469218	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	91	91469218	44065529	113	18191											
MYOF	26509	ucsc.edu;bcgsc.ca	37	10	95191205	95191205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYOF	NM_133337	exon4	c.A305G	p.K102R	ATCAGCTTGTACG	.	33	4	65	0	.	93	C	95191205	T	C	95191205	3	2	142	1	0	0	0	0	1	0	0	0	10089	1609	56	2	6084	2	MYOF	10	95191205	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	3721987	95191205	40343542	114	18192											
ZNF518A	9849	broad.mit.edu;ucsc.edu	37	10	97918109	97918109	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF518A	.	.	.	.	AACAACCAATTAG	.	53	7	68	0	.	23	A	97918109	C	A	97918109	1	1	142	0	1	0	0	0	0	0	0	0	17959	594	21	3		3	ZNF518A	10	97918109	RNA	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2726904	97918109	37616638	115	18193											
C10orf12	26148	ucsc.edu;bcgsc.ca	37	10	98741664	98741664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf12	NM_015652	exon1	c.C517A	p.H173N	GAATGCCACTTTG	.	20	4	49	0	.	92	A	98741664	C	A	98741664	3	1	142	1	0	0	0	0	1	0	0	0	1589	594	21	3	519	3	C10orf12	10	98741664	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	823555	98741664	36793083	116	18194											
ZDHHC16	84287	broad.mit.edu;bcgsc.ca	37	10	99213323	99213323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZDHHC16	NM_198043	exon6	c.G593T	p.R198L	ACCATCGGTACTT	.	97	8	194	0	.	91	T	99213323	G	T	99213323	3	4	142	1	0	0	0	0	1	0	0	0	17603	1116	39	1	611	1	ZDHHC16	10	99213323	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	471659	99213323	36321424	117	18195											
COX15	1355	ucsc.edu;bcgsc.ca	37	10	101487248	101487248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	COX15,NS,carcinoma,-2	COX15	NM_004376	exon3	c.G345T	p.E115D	CCATTCCTCTTGG	.	38	4	61	0	.	227	A	101487248	C	A	101487248	3	1	142	1	0	0	0	0	1	0	0	0	3764	680	24	3	985	3	COX15	10	101487248	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2273925	101487248	34047499	118	18196											
C10orf2	56652	ucsc.edu;bcgsc.ca	37	10	102750244	102750244	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf2	NM_021830	exon3	c.T1536C	p.H512H	TTGTCATGTGATC	.	24	4	53	0	.	69	C	102750244	T	C	102750244	2	2	142	1	0	0	0	0	0	0	0	1	1597	1461	51	2		2	C10orf2	10	102750244	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1262996	102750244	32784503	119	18197											
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129141983	129141983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK1	NM_001380	exon31	c.G3134A	p.S1045N	TTTCAAGTGCCAA	.	56	6	94	0	.	698	A	129141983	G	A	129141983	3	1	142	1	0	0	0	0	1	0	0	0	4684	1029	36	3	3256	3	DOCK1	10	129141983	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	26391739	129141983	6392764	120	18198											
C11orf35	256329	ucsc.edu;bcgsc.ca	37	11	557033	557033	+	Missense_Mutation	SNP	G	G	A	rs147157097	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C11orf35	NM_173573	exon8	c.C778T	p.R260W	GATGCCGCTCGGA	.	35	4	58	0	G|1.000;A|0.000	69	A	557033	G	A	557033	3	1	142	1	0	0	0	0	1	0	0	0	1638	1086	38	1	1154	1	C11orf35	11	557033	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		557033	134449483	121	18199											
PDDC1	347862	ucsc.edu;bcgsc.ca	37	11	773565	773565	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDDC1	NM_182612	exon4	c.T312C	p.S104S	GGAGCCACTGCTG	.	45	4	75	0	.	90	G	773565	A	G	773565	2	3	142	1	0	0	0	0	0	0	0	1	11629	156	6	2		2	PDDC1	11	773565	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	216532	773565	134232951	122	18200											
TRIM22	10346	ucsc.edu;bcgsc.ca	37	11	5718574	5718574	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM22	NM_001199573	exon3	c.519+1G>A	.	TGGAAGGCAGGAG	.	50	5	39	0	.	90	A	5718574	G	A	5718574	5	1	142	1	0	0	0	0	0	0	1	0	16493	1217	42	3	526	3	TRIM22	11	5718574	Splice_Site	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	4945009	5718574	129287942	123	18201											
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33358704	33358704	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK3	NM_001048200	exon4	c.A1305T	p.K435N	TTGCAAAGAAACA	.	72	33	57	0	.	336	T	33358704	A	T	33358704	3	4	142	1	0	0	0	0	1	0	0	0	7118	69	3	4	1315	4	HIPK3	11	33358704	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	27640130	33358704	101647812	124	18202	101	2									
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33358706	33358706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK3	NM_001048200	exon4	c.A1307C	p.E436A	GCAAAGAAACAGA	.	71	32	56	0	.	336	C	33358706	A	C	33358706	3	2	142	1	0	0	0	0	1	0	0	0	7118	246	9	5	1317	5	HIPK3	11	33358706	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	2	33358706	101647810	125	18203	101	2									
ELF5	2001	ucsc.edu;bcgsc.ca	37	11	34527177	34527177	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ELF5	NM_198381	exon2	c.A150G	p.T50T	CGCACCTGTCTGA	.	34	4	28	0	.	227	C	34527177	T	C	34527177	2	2	142	1	0	0	0	0	0	0	0	1	5057	1594	55	2		2	ELF5	11	34527177	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1168471	34527177	100479339	126	18204											
SDHAF2	54949	broad.mit.edu;bcgsc.ca	37	11	61205239	61205239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDHAF2	NM_017841	exon2	c.A179G	p.D60G	GAACTGATGAATC	.	76	6	62	0	.	92	G	61205239	A	G	61205239	3	3	142	1	0	0	0	0	1	0	0	0	13964	333	12	2	185	2	SDHAF2	11	61205239	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	26678062	61205239	73801277	127	18205											
SCGB2A2	4250	broad.mit.edu;ucsc.edu	37	11	62040428	62040428	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCGB2A2	NM_002411	exon3	c.244-1G>C	.	TTTCTAGCAATTA	.	34	16	17	0	.	91	C	62040428	G	C	62040428	5	2	142	1	0	0	0	0	0	0	1	0	13900	985	34	4	253	4	SCGB2A2	11	62040428	Splice_Site	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	835189	62040428	72966088	128	18206											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62290411	62290411	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AHNAK	NM_001620	exon5	c.G11478T	p.V3826V	CAGGTTCACATCC	.	81	34	71	0	.	109	A	62290411	C	A	62290411	2	1	142	1	0	0	0	0	0	0	0	1	414	813	29	3		3	AHNAK	11	62290411	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	249983	62290411	72716105	129	18207											
SLC22A24	283238	ucsc.edu;bcgsc.ca	37	11	62848565	62848565	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001136506	exon9	c.C1425A	p.S475S	CCTACCGGACACT	.	46	4	35	0	.	.	T	62848565	G	T	62848565	2	4	142	1	0	0	0	0	0	0	0	1	14453	1103	39	1		1	SLC22A24	11	62848565	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	558154	62848565	72157951	130	18208											
LTBP3	4054	ucsc.edu;bcgsc.ca	37	11	65314942	65314942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LTBP3	NM_001130144	exon14	c.G2075T	p.R692L	TTGAGCCGGTAGC	.	51	5	37	0	.	91	A	65314942	C	A	65314942	3	1	142	1	0	0	0	0	1	0	0	0	9075	652	23	1	1896	1	LTBP3	11	65314942	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2466377	65314942	69691574	131	18209											
CATSPER1	117144	ucsc.edu;bcgsc.ca	37	11	65786337	65786337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CATSPER1	NM_053054	exon10	c.A2162G	p.K721R	AGCCGCTTCAGCA	.	30	4	27	0	.	92	C	65786337	T	C	65786337	3	2	142	1	0	0	0	0	1	0	0	0	2687	1609	56	2	192	2	CATSPER1	11	65786337	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	471395	65786337	69220179	132	18210											
NPAS4	266743	ucsc.edu;bcgsc.ca	37	11	66190697	66190697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAS4	NM_178864	exon5	c.C802A	p.R268S	CACTACCGCCTGT	.	41	4	42	0	.	90	A	66190697	C	A	66190697	3	1	142	1	0	0	0	0	1	0	0	0	10565	652	23	1	820	1	NPAS4	11	66190697	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	404360	66190697	68815819	133	18211											
NPAS4	266743	ucsc.edu;bcgsc.ca	37	11	66191182	66191182	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAS4	NM_178864	exon6	c.C942A	p.I314I	CCCAATCAGGTAA	.	40	4	39	1	.	90	A	66191182	C	A	66191182	2	1	142	1	0	0	0	0	0	0	0	1	10565	816	29	3		3	NPAS4	11	66191182	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	485	66191182	68815334	134	18212											
ARAP1	116985	ucsc.edu;bcgsc.ca	37	11	72407664	72407664	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARAP1	NM_001040118	exon23	c.C3202A	p.R1068R	GCTCTCGGTACCT	.	34	5	26	0	.	91	T	72407664	G	T	72407664	2	4	142	1	0	0	0	0	0	0	0	1	838	1124	39	1		1	ARAP1	11	72407664	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	6216482	72407664	62598852	135	18213											
RELT	84957	ucsc.edu;bcgsc.ca	37	11	73106527	73106527	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RELT	NM_152222	exon11	c.G1284T	p.L428L	CAACCTGGTCATC	.	36	4	43	1	.	228	T	73106527	G	T	73106527	2	4	142	1	0	0	0	0	0	0	0	1	13221	1335	47	3		3	RELT	11	73106527	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	698863	73106527	61899989	136	18214											
RSF1	51773	ucsc.edu;bcgsc.ca	37	11	77412597	77412597	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RSF1	NM_016578	exon6	c.C1677A	p.T559T	CGACTCGGTGGAA	.	49	5	90	0	.	93	T	77412597	G	T	77412597	2	4	142	1	0	0	0	0	0	0	0	1	13699	1103	39	1		1	RSF1	11	77412597	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	4306070	77412597	57593919	137	18215											
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92087568	92087568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT3	NM_001008781	exon1	c.A2290T	p.T764S	CTATTTACAATAT	.	39	4	59	0	.	73	T	92087568	A	T	92087568	3	4	142	1	0	0	0	0	1	0	0	0	5691	391	14	4	2292	4	FAT3	11	92087568	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	14674971	92087568	42918948	138	18216											
TRPC6	7225	ucsc.edu;bcgsc.ca	37	11	101342954	101342954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPC6	NM_004621	exon8	c.C2119A	p.L707I	CATAAAGAACGTA	.	30	4	57	0	.	93	T	101342954	G	T	101342954	3	4	142	1	0	0	0	0	1	0	0	0	16580	942	33	3	700	3	TRPC6	11	101342954	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	9255386	101342954	33663562	139	18217											
BIRC3	330	ucsc.edu;bcgsc.ca	37	11	102206714	102206714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BIRC3	NM_001165	exon7	c.C1342T	p.R448W	TTAATCCGGAAGA	.	24	4	36	0	.	662	T	102206714	C	T	102206714	3	4	142	1	0	0	0	0	1	0	0	0	1436	643	23	1	1364	1	BIRC3	11	102206714	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	863760	102206714	32799802	140	18218											
VWA5A	4013	ucsc.edu;bcgsc.ca	37	11	124013226	124013226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWA5A	NM_014622	exon16	c.G2101T	p.A701S	GATCTAGCCAAGA	.	42	4	68	0	.	92	T	124013226	G	T	124013226	3	4	142	1	0	0	0	0	1	0	0	0	17239	971	34	3	2163	3	VWA5A	11	124013226	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	21806512	124013226	10993290	141	18219											
TMEM218	219854	hgsc.bcm.edu;ucsc.edu	37	11	124972140	124972140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM218	NM_001258243	exon4	c.G103A	p.G35R	CCATCCCGCGGGG	.	11	11	25	0	.	68	T	124972140	C	T	124972140	3	4	142	1	0	0	0	0	1	0	0	0	16138	667	23	1		1	TMEM218	11	124972140	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	958914	124972140	10034376	142	18220											
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3048495	3048495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP3	NM_003324	exon11	c.A1214T	p.Q405L	TCATGCAGTTTGG	.	124	51	150	0	.	226	T	3048495	A	T	3048495	3	4	142	1	0	0	0	0	1	0	0	0	16772	188	7	4	1256	4	TULP3	12	3048495	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10		3048495	130803400	143	18221											
VWF	7450	broad.mit.edu;bcgsc.ca	37	12	6161738	6161738	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWF	NM_000552	exon16	c.A2157G	p.E719E	GATGTCTTCTGGC	.	66	5	115	0	.	163	C	6161738	T	C	6161738	2	2	142	1	0	0	0	0	0	0	0	1	17243	1606	56	2		2	VWF	12	6161738	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	3113243	6161738	127690157	144	18222											
PEX5	5830	ucsc.edu;bcgsc.ca	37	12	7343827	7343827	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PEX5	NM_001131023	exon4	c.G234T	p.V78V	GTTGGTGGCTGAA	.	45	4	53	0	.	91	T	7343827	G	T	7343827	2	4	142	1	0	0	0	0	0	0	0	1	11748	1335	47	3		3	PEX5	12	7343827	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	1182089	7343827	126508068	145	18223											
A2ML1	144568	ucsc.edu;bcgsc.ca	37	12	9010546	9010546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	A2ML1	NM_144670	exon26	c.A3112T	p.T1038S	AGGCTGACAGCGT	.	46	4	68	0	.	93	T	9010546	A	T	9010546	3	4	142	1	0	0	0	0	1	0	0	0	5	275	10	4	3214	4	A2ML1	12	9010546	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	1666719	9010546	124841349	146	18224											
GUCY2C	2984	ucsc.edu;bcgsc.ca	37	12	14827660	14827660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GUCY2C	NM_004963	exon8	c.G983A	p.G328E	AGGATTCCATTCA	.	47	4	45	0	.	338	T	14827660	C	T	14827660	3	4	142	1	0	0	0	0	1	0	0	0	6896	855	30	3	2318	3	GUCY2C	12	14827660	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	5817114	14827660	119024235	147	18225											
EPS8	2059	broad.mit.edu;bcgsc.ca	37	12	15784587	15784587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPS8	NM_004447	exon18	c.G1833T	p.M611I	ATACTCCATCCTT	.	81	6	84	0	.	94	A	15784587	C	A	15784587	3	1	142	1	0	0	0	0	1	0	0	0	5194	594	21	3	651	3	EPS8	12	15784587	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	956927	15784587	118067308	148	18226											
OVCH1	341350	broad.mit.edu;bcgsc.ca	37	12	29628067	29628067	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OVCH1	NM_183378	exon14	c.G1527T	p.T509T	TATCACCGTCATG	.	184	8	135	0	.	210	A	29628067	C	A	29628067	2	1	142	1	0	0	0	0	0	0	0	1	11323	639	23	1		1	OVCH1	12	29628067	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	13843480	29628067	104223828	149	18227											
BICD1	636	ucsc.edu;bcgsc.ca	37	12	32520626	32520626	+	Missense_Mutation	SNP	C	C	A	rs202246949	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BICD1	NM_001003398	exon8	c.C2483A	p.P828Q	TGCCTCCGTACCG	.	20	4	31	0	.	153	A	32520626	C	A	32520626	3	1	142	1	0	0	0	0	1	0	0	0	1428	652	23	1	2821	1	BICD1	12	32520626	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2892559	32520626	101331269	150	18228											
KRT76	51350	ucsc.edu;bcgsc.ca	37	12	53169279	53169279	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KRT76	NM_015848	exon2	c.C708A	p.S236S	GATGTAGGATTCA	.	49	5	53	0	.	154	T	53169279	G	T	53169279	2	4	142	1	0	0	0	0	0	0	0	1	8489	987	35	3		3	KRT76	12	53169279	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	20648653	53169279	80682616	151	18229											
ITGB7	3695	ucsc.edu;bcgsc.ca	37	12	53589937	53589937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGB7	NM_000889	exon7	c.C863T	p.S288L	TCGTCTGAAGTGA	.	31	4	46	1	.	231	A	53589937	G	A	53589937	3	1	142	1	0	0	0	0	1	0	0	0	7900	1294	45	3	1573	3	ITGB7	12	53589937	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	420658	53589937	80261958	152	18230											
ATP5G2	517	ucsc.edu;bcgsc.ca	37	12	54063081	54063081	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP5G2	NM_005176	exon4	c.C333T	p.V111V	GCTAGAGACAAGT	.	38	4	38	0	.	91	A	54063081	G	A	54063081	2	1	142	1	0	0	0	0	0	0	0	1	1154	929	33	3		3	ATP5G2	12	54063081	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	473144	54063081	79788814	153	18231											
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57548458	57548458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRP1	NM_002332	exon8	c.C1201A	p.R401S	AAGGGCCGCCAGA	.	30	4	42	0	.	596	A	57548458	C	A	57548458	3	1	142	1	0	0	0	0	1	0	0	0	8951	652	23	1	1231	1	LRP1	12	57548458	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3485377	57548458	76303437	154	18232											
METTL1	4234	ucsc.edu;bcgsc.ca	37	12	58163641	58163641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	METTL1	NM_005371	exon3	c.G373T	p.A125S	GAGCTGCGCGTAG	.	45	4	68	0	.	492	A	58163641	C	A	58163641	3	1	142	1	0	0	0	0	1	0	0	0	9493	768	27	1	473	1	METTL1	12	58163641	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	615183	58163641	75688254	155	18233											
C12orf56	115749	ucsc.edu;bcgsc.ca	37	12	64661044	64661044	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C12orf56	NM_001170633	exon13	c.G1788A	p.L596L	TTTCTGCAAGGCT	.	33	4	31	0	.	68	T	64661044	C	T	64661044	2	4	142	1	0	0	0	0	0	0	0	1	1700	709	25	3		3	C12orf56	12	64661044	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	6497403	64661044	69190851	156	18234											
LRRC10	376132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70004150	70004150	+	Missense_Mutation	SNP	G	G	T	rs201257055	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC10	NM_201550	exon1	c.C469A	p.R157S	GCAAACGCAGGGC	.	43	18	35	1	G|0.999;A|0.001	514	T	70004150	G	T	70004150	3	4	142	1	0	0	0	0	1	0	0	0	8967	1087	38	1	368	1	LRRC10	12	70004150	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	5343106	70004150	63847745	157	18235											
DUSP6	1848	ucsc.edu;bcgsc.ca	37	12	89745641	89745641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP6	NM_001946	exon1	c.C176A	p.P59Q	ATGCCCGGGATGG	.	34	4	47	0	.	846	T	89745641	G	T	89745641	3	4	142	1	0	0	0	0	1	0	0	0	4829	1116	39	1	981	1	DUSP6	12	89745641	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	19741491	89745641	44106254	158	18236											
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99117014	99117014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APAF1	NM_181861	exon23	c.A3128G	p.H1043R	GAGGCCATCAGGA	.	123	48	113	0	.	229	G	99117014	A	G	99117014	3	3	142	1	0	0	0	0	1	0	0	0	755	217	8	2	3214	2	APAF1	12	99117014	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	9371373	99117014	34734881	159	18237											
FICD	11153	ucsc.edu;bcgsc.ca	37	12	108912413	108912413	+	Missense_Mutation	SNP	C	C	A	rs139799946	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FICD	NM_007076	exon3	c.C538A	p.R180S	GTCAACCGCGATC	.	43	4	57	0	C|1.000;T|0.000	68	A	108912413	C	A	108912413	3	1	142	1	0	0	0	0	1	0	0	0	5887	652	23	1	544	1	FICD	12	108912413	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	9795399	108912413	24939482	160	18238											
MPHOSPH9	10198	ucsc.edu;bcgsc.ca	37	12	123647656	123647656	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPHOSPH9	NM_022782	exon16	c.A2478G	p.P826P	AGTCACTGGTGTT	.	32	4	30	0	.	514	C	123647656	T	C	123647656	2	2	142	1	0	0	0	0	0	0	0	1	9728	1567	55	2		2	MPHOSPH9	12	123647656	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	14735243	123647656	10204239	161	18239											
MPHOSPH9	10198	ucsc.edu;bcgsc.ca	37	12	123699320	123699320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPHOSPH9	NM_022782	exon3	c.C602A	p.P201Q	GCATTTGGAGTTT	.	42	4	46	0	.	514	T	123699320	G	T	123699320	3	4	142	1	0	0	0	0	1	0	0	0	9728	1348	47	3	2565	3	MPHOSPH9	12	123699320	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	51664	123699320	10152575	162	18240											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35731313	35731313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NBEA	NM_015678	exon21	c.A2750G	p.Y917C	TGGTCTACAATAT	.	116	109	111	1	.	144	G	35731313	A	G	35731313	3	3	142	1	0	0	0	0	1	0	0	0	10187	391	14	2	2832	2	NBEA	13	35731313	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10		35731313	79438565	163	18241											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48947605	48947606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RB1	NM_000321	exon12	c.1192_1193insA	p.E398fs	CCTTCAGAAAATC	.	311	276	228	0	.	3784	A	48947606	-	A	48947605	7	5	142	1	0	1	1	0	0	0	0	0	13098	943	33	0	1238	0	RB1	13	48947605	Frame_Shift_Ins	INS	-	TCGA-G3-A25U-01A-11D-A16V-10	13216292	48947605	66222273	164	18242											
FAM124A	220108	ucsc.edu;bcgsc.ca	37	13	51855053	51855053	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM124A	NM_145019	exon5	c.C1410T	p.P470P	TGCACCCAGTAGG	.	31	4	32	0	.	90	T	51855053	C	T	51855053	2	4	142	1	0	0	0	0	0	0	0	1	5425	581	21	3		3	FAM124A	13	51855053	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2907448	51855053	63314825	165	18243											
CHD8	57680	ucsc.edu;bcgsc.ca	37	14	21859752	21859752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD8	NM_001170629	exon35	c.A6935G	p.E2312G	CGGGTCTCCAGGT	.	53	4	54	0	.	277	C	21859752	T	C	21859752	3	2	142	1	0	0	0	0	1	0	0	0	3331	1551	54	2	822	2	CHD8	14	21859752	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		21859752	85489788	166	18244											
SNX6	58533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35072633	35072633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNX6	NM_152233	exon6	c.T473G	p.V158G	AGGAACACTTCAT	.	168	75	176	2	.	226	C	35072633	A	C	35072633	3	2	142	1	0	0	0	0	1	0	0	0	14906	159	6	5	819	5	SNX6	14	35072633	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	13212881	35072633	72276907	167	18245											
ESR2	2100	ucsc.edu;bcgsc.ca	37	14	64749351	64749351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ESR2	NM_001214902	exon1	c.C353A	p.P118H	TTTACAGGTAAGG	.	26	4	28	0	.	611	T	64749351	G	T	64749351	3	4	142	1	0	0	0	0	1	0	0	0	5257	1000	35	3	1357	3	ESR2	14	64749351	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	29676718	64749351	42600189	168	18246											
ZFYVE1	53349	ucsc.edu;bcgsc.ca	37	14	73460001	73460001	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFYVE1	NM_021260	exon4	c.T1053C	p.P351P	GGCTTCAGGGAAA	.	41	4	55	0	.	91	G	73460001	A	G	73460001	2	3	142	1	0	0	0	0	0	0	0	1	17660	175	7	2		2	ZFYVE1	14	73460001	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	8710650	73460001	33889539	169	18247											
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75139644	75139644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0317	NM_001039479	exon11	c.A1312G	p.T438A	GAAAGGTCTCAGA	.	52	4	46	0	.	525	C	75139644	T	C	75139644	3	2	142	1	0	0	0	0	1	0	0	0	8167	1667	58	2	1199	2	KIAA0317	14	75139644	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1679643	75139644	32209896	170	18248											
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102391540	102391540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2R5C	NM_001161725	exon16	c.C1599A	p.D533E	TCAGGACCCCCAC	.	80	36	61	0	.	659	A	102391540	C	A	102391540	3	1	142	1	0	0	0	0	1	0	0	0	12394	506	18	3	1953	3	PPP2R5C	14	102391540	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	27251896	102391540	4958000	171	18249											
DISP2	85455	ucsc.edu;bcgsc.ca	37	15	40659780	40659780	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DISP2	NM_033510	exon8	c.G1467T	p.T489T	GGACACGGTGTAC	.	39	5	67	0	.	92	T	40659780	G	T	40659780	2	4	142	1	0	0	0	0	0	0	0	1	4540	1103	39	1		1	DISP2	15	40659780	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		40659780	61871612	172	18250											
MAP1A	4130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43816465	43816465	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP1A	NM_002373	exon4	c.T2794C	p.L932L	AAAGGCTTGTCTG	.	30	7	36	0	.	141	C	43816465	T	C	43816465	2	2	142	1	0	0	0	0	0	0	0	1	9227	1606	56	2		2	MAP1A	15	43816465	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	3156685	43816465	58714927	173	18251											
ALDH1A2	8854	ucsc.edu;bcgsc.ca	37	15	58247428	58247428	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALDH1A2	NM_003888	exon13	c.G1524T	p.T508T	TGTCACCGTCTTA	.	76	6	77	0	.	226	A	58247428	C	A	58247428	2	1	142	1	0	0	0	0	0	0	0	1	491	639	23	1		1	ALDH1A2	15	58247428	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	14430963	58247428	44283964	174	18252											
CORO2B	10391	ucsc.edu;bcgsc.ca	37	15	68937510	68937510	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CORO2B	NM_006091	exon2	c.T27C	p.R9R	CTGGCGTCCGCAA	.	43	5	39	0	.	158	C	68937510	T	C	68937510	2	2	142	1	0	0	0	0	0	0	0	1	3757	1654	58	2		2	CORO2B	15	68937510	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	10690082	68937510	33593882	175	18253											
ADAMTS7	11173	ucsc.edu;bcgsc.ca	37	15	79058506	79058506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS7	NM_014272	exon19	c.C3747T	p.T1249T	GGAGTGGGTGCTG	.	25	4	48	0	.	226	A	79058506	G	A	79058506	2	1	142	1	0	0	0	0	0	0	0	1	271	1219	43	3		3	ADAMTS7	15	79058506	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	10120996	79058506	23472886	176	18254											
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81589305	81589305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IL16	NM_001172128	exon13	c.G1939A	p.E647K	CCACAGGAAGACA	.	46	22	65	0	.	653	A	81589305	G	A	81589305	3	1	142	1	0	0	0	0	1	0	0	0	7633	1175	41	3	1985	3	IL16	15	81589305	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	2530799	81589305	20942087	177	18255											
STARD5	80765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81615246	81615246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STARD5	NM_181900	exon2	c.G143T	p.G48V	AGGTTCCCTGGAA	.	74	43	69	0	.	91	A	81615246	C	A	81615246	3	1	142	1	0	0	0	0	1	0	0	0	15259	623	22	3	518	3	STARD5	15	81615246	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	25941	81615246	20916146	178	18256											
MEX3B	84206	ucsc.edu;bcgsc.ca	37	15	82336703	82336703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEX3B	NM_032246	exon2	c.C508A	p.R170S	CCACGCGGTAGGG	.	27	4	33	0	.	226	T	82336703	G	T	82336703	3	4	142	1	0	0	0	0	1	0	0	0	9510	1116	39	1	1205	1	MEX3B	15	82336703	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	721457	82336703	20194689	179	18257											
MEF2A	4205	ucsc.edu;bcgsc.ca	37	15	100230447	100230447	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEF2A	NM_005587	exon8	c.G678A	p.G226G	CCCAGGGAATGGA	.	31	4	35	0	.	455	A	100230447	G	A	100230447	2	1	142	1	0	0	0	0	0	0	0	1	9455	1188	41	3		3	MEF2A	15	100230447	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	17893744	100230447	2300945	180	18258											
PIGQ	9091	ucsc.edu;bcgsc.ca	37	16	628482	628482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGQ	NM_148920	exon5	c.T1046C	p.L349P	TCTTCCTCTACCA	.	27	4	44	0	.	226	C	628482	T	C	628482	3	2	142	1	0	0	0	0	1	0	0	0	11896	1551	54	2	1060	2	PIGQ	16	628482	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		628482	89726271	181	18259											
WDR90	197335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	712780	712780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR90	NM_145294	exon34	c.C4247T	p.T1416M	CGGGCACGCTGTG	.	31	11	49	0	.	92	T	712780	C	T	712780	3	4	142	1	0	0	0	0	1	0	0	0	17334	536	19	1	4381	1	WDR90	16	712780	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	84298	712780	89641973	182	18260											
CLCN7	1186	ucsc.edu;bcgsc.ca	37	16	1510868	1510868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLCN7	NM_001287	exon5	c.G433T	p.D145Y	CGATGTCAATGAA	.	38	4	56	1	.	92	A	1510868	C	A	1510868	3	1	142	1	0	0	0	0	1	0	0	0	3468	826	29	3	2068	3	CLCN7	16	1510868	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	798088	1510868	88843885	183	18261											
GLYR1	84656	ucsc.edu;bcgsc.ca	37	16	4861199	4861199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLYR1	NM_032569	exon15	c.C1559A	p.P520Q	GGAGTCGGATGGT	.	49	4	61	0	.	90	T	4861199	G	T	4861199	3	4	142	1	0	0	0	0	1	0	0	0	6483	1116	39	1	110	1	GLYR1	16	4861199	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	3350331	4861199	85493554	184	18262											
UBN1	29855	ucsc.edu;bcgsc.ca	37	16	4925031	4925031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBN1	NM_001079514	exon15	c.A2620G	p.K874E	TCTCACAAGACCC	.	20	4	17	0	.	92	G	4925031	A	G	4925031	3	3	142	1	0	0	0	0	1	0	0	0	16889	131	5	2	2674	2	UBN1	16	4925031	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	63832	4925031	85429722	185	18263											
VWA3A	146177	ucsc.edu;bcgsc.ca	37	16	22132937	22132937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWA3A	NM_173615	exon14	c.A1355G	p.E452G	TCCATGAGGTAAT	.	47	4	51	0	.	1	G	22132937	A	G	22132937	3	3	142	1	0	0	0	0	1	0	0	0	17237	318	11	2	1409	2	VWA3A	16	22132937	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	17207906	22132937	68221816	186	18264											
TBC1D10B	26000	ucsc.edu;bcgsc.ca	37	16	30380803	30380803	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015527	exon1	c.C702A	p.T234T	AGCTGGGGTCACG	.	22	5	32	0	.	.	T	30380803	G	T	30380803	2	4	142	1	0	0	0	0	0	0	0	1	15596	1219	43	3		3	TBC1D10B	16	30380803	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	8247866	30380803	59973950	187	18265											
CAPNS2	84290	ucsc.edu;bcgsc.ca	37	16	55601229	55601229	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032330	exon1	c.A561G	p.E187E	AAATGAACAACTT	.	44	4	64	0	.	.	G	55601229	A	G	55601229	2	3	142	1	0	0	0	0	0	0	0	1	2634	40	2	2		2	CAPNS2	16	55601229	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	25220426	55601229	34753524	188	18266											
SNTB2	6645	ucsc.edu;bcgsc.ca	37	16	69279693	69279693	+	Missense_Mutation	SNP	C	C	A	rs200536488	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNTB2	NM_006750	exon2	c.C769A	p.L257I	AGAAACCTAAGCA	.	28	4	51	0	C|0.999;T|0.001	90	A	69279693	C	A	69279693	3	1	142	1	0	0	0	0	1	0	0	0	14873	680	24	3	775	3	SNTB2	16	69279693	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	13678464	69279693	21075060	189	18267											
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	16	70841965	70841965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HYDIN	NM_001270974	exon86	c.A14884G	p.T4962A	AGTCGGTCTGAAA	.	28	6	56	0	.	92	C	70841965	T	C	70841965	3	2	142	1	0	0	0	0	1	0	0	0	7467	1681	58	2	485	2	HYDIN	16	70841965	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1562272	70841965	19512788	190	18268											
DHODH	1723	ucsc.edu;bcgsc.ca	37	16	72045982	72045982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHODH	NM_001361	exon2	c.G55A	p.G19R	CTGGGGGGAGGAG	.	25	4	37	0	.	227	A	72045982	G	A	72045982	3	1	142	1	0	0	0	0	1	0	0	0	4484	1233	43	3	61	3	DHODH	16	72045982	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	1204017	72045982	18308771	191	18269											
DHX38	9785	ucsc.edu;bcgsc.ca	37	16	72142233	72142233	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX38	NM_014003	exon22	c.C3072A	p.S1024S	TTACTCCACCATC	.	40	6	68	0	.	227	A	72142233	C	A	72142233	2	1	142	1	0	0	0	0	0	0	0	1	4511	581	21	3		3	DHX38	16	72142233	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	96251	72142233	18212520	192	18270											
ABR	29	ucsc.edu;bcgsc.ca	37	17	975919	975919	+	Missense_Mutation	SNP	A	A	G	rs200320950		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABR	NM_021962	exon8	c.T829C	p.F277L	ACAGGAAGTTCTG	.	31	5	83	0	A|1.000;G|0.000	91	G	975919	A	G	975919	3	3	142	1	0	0	0	0	1	0	0	0	99	72	3	2	1814	2	ABR	17	975919	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10		975919	80219291	193	18271											
SGSM2	9905	ucsc.edu;bcgsc.ca	37	17	2276333	2276333	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SGSM2	NM_014853	exon16	c.T1875C	p.L625L	TCTGCTTGGCCAC	.	28	4	52	0	.	68	C	2276333	T	C	2276333	2	2	142	1	0	0	0	0	0	0	0	1	14223	1799	63	2		2	SGSM2	17	2276333	Silent	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1300414	2276333	78918877	194	18272											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	51	39	83	0	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	142	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	5301201	7577534	73617676	195	18273											
ADORA2B	136	ucsc.edu;bcgsc.ca	37	17	15878047	15878047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADORA2B	NM_000676	exon2	c.G390T	p.W130C	CCTCTGGGTCCTT	.	45	5	87	0	.	228	T	15878047	G	T	15878047	3	4	142	1	0	0	0	0	1	0	0	0	328	1241	43	3	396	3	ADORA2B	17	15878047	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	8300513	15878047	65317163	196	18274											
SREBF1	6720	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17716721	17716721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SREBF1	NM_001005291	exon19	c.C3265T	p.R1089C	GACTGCGGTCGAG	.	24	10	28	0	.	91	A	17716721	G	A	17716721	3	1	142	1	0	0	0	0	1	0	0	0	15140	1116	39	1	276	1	SREBF1	17	17716721	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	1838674	17716721	63478489	197	18275											
NOS2	4843	ucsc.edu;bcgsc.ca	37	17	26099445	26099445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOS2	NM_000625	exon14	c.G1593T	p.K531N	CATTGTCTTGCGC	.	46	4	58	0	.	156	A	26099445	C	A	26099445	3	1	142	1	0	0	0	0	1	0	0	0	10543	912	32	3	1924	3	NOS2	17	26099445	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	8382724	26099445	55095765	198	18276											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27442787	27442787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO18A	NM_078471	exon12	c.G2122A	p.E708K	ACAGCTCCTCCAG	.	34	15	54	0	.	22	T	27442787	C	T	27442787	3	4	142	1	0	0	0	0	1	0	0	0	10065	864	30	3	4166	3	MYO18A	17	27442787	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	1343342	27442787	53752423	199	18277											
MYO1D	4642	ucsc.edu;bcgsc.ca	37	17	31075959	31075959	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO1D	NM_015194	exon12	c.T1533C	p.D511D	CACTACATCGCCT	.	55	5	49	0	.	137	G	31075959	A	G	31075959	2	3	142	1	0	0	0	0	0	0	0	1	10071	214	8	2		2	MYO1D	17	31075959	Silent	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	3633172	31075959	50119251	200	18278											
CCR7	1236	ucsc.edu;bcgsc.ca	37	17	38715178	38715178	+	Missense_Mutation	SNP	G	G	T	rs193282140	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCR7	NM_001838	exon2	c.C27A	p.S9R	CAGCACGCTTTTC	.	39	5	61	0	G|0.999;A|0.001	659	T	38715178	G	T	38715178	3	4	142	1	0	0	0	0	1	0	0	0	2946	1078	38	1	1117	1	CCR7	17	38715178	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	7639219	38715178	42480032	201	18279											
COASY	80347	ucsc.edu;bcgsc.ca	37	17	40717936	40717936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COASY	NM_001042532	exon11	c.T1732C	p.W578R	AAAGCCTGGGCCC	.	38	4	51	1	.	115	C	40717936	T	C	40717936	3	2	142	1	0	0	0	0	1	0	0	0	3652	1580	55	2	1770	2	COASY	17	40717936	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	2002758	40717936	40477274	202	18280											
ST6GALNAC2	10610	ucsc.edu;bcgsc.ca	37	17	74562309	74562309	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ST6GALNAC2	NM_006456	exon9	c.C1002A	p.S334S	GTGGTCGGAAAAT	.	65	6	46	0	.	90	T	74562309	G	T	74562309	2	4	142	1	0	0	0	0	0	0	0	1	15223	1103	39	1		1	ST6GALNAC2	17	74562309	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	33844373	74562309	6632901	203	18281											
LRRC45	201255	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79984801	79984801	+	Missense_Mutation	SNP	C	C	T	rs202017922		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC45	NM_144999	exon6	c.C688T	p.R230W	CAGGACCGGCTCA	.	31	8	24	0	C|0.993;T|0.007	91	T	79984801	C	T	79984801	3	4	142	1	0	0	0	0	1	0	0	0	9002	643	23	1	710	1	LRRC45	17	79984801	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	5422492	79984801	1210409	204	18282											
PTPN2	5771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	12802149	12802149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPN2	NM_001207013	exon9	c.A929C	p.K310T	CATCGTTTCTAGG	.	98	51	66	0	.	652	G	12802149	T	G	12802149	3	3	142	1	0	0	0	0	1	0	0	0	12785	1855	64	5	421	5	PTPN2	18	12802149	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		12802149	65275099	205	18283											
FHOD3	80206	ucsc.edu;bcgsc.ca	37	18	34289290	34289290	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FHOD3	NM_025135	exon15	c.G1944A	p.S648S	CGTCTCGTCCTCC	.	47	4	72	0	.	139	A	34289290	G	A	34289290	2	1	142	1	0	0	0	0	0	0	0	1	5883	1132	40	1		1	FHOD3	18	34289290	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	21487141	34289290	43787958	206	18284											
LINGO3	645191	ucsc.edu;bcgsc.ca	37	19	2290770	2290770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001101391	exon2	c.A1006G	p.S336G	AGGTGCTCTCCTC	.	47	5	47	0	.	.	C	2290770	T	C	2290770	3	2	142	1	0	0	0	0	1	0	0	0	8816	1551	54	2	776	2	LINGO3	19	2290770	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10		2290770	56838213	207	18285											
FBN3	84467	ucsc.edu;bcgsc.ca	37	19	8154496	8154496	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBN3	NM_032447	exon50	c.C6309A	p.T2103T	TCCATCGGTGTTG	.	41	4	52	0	.	100	T	8154496	G	T	8154496	2	4	142	1	0	0	0	0	0	0	0	1	5704	1103	39	1		1	FBN3	19	8154496	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	5863726	8154496	50974487	208	18286											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9006378	9006378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MUC16	NM_024690	exon45	c.C39640G	p.P13214A	ACAGAGGGCCAAC	.	42	19	48	0	.	566	C	9006378	G	C	9006378	3	2	142	1	0	0	0	0	1	0	0	0	9973	1232	43	4	4043	4	MUC16	19	9006378	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	851882	9006378	50122605	209	18287											
PIN1	5300	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9949168	9949168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIN1	NM_006221	exon2	c.G115T	p.G39C	CCCAGCGGCAACA	.	46	17	55	0	.	227	T	9949168	G	T	9949168	3	4	142	1	0	0	0	0	1	0	0	0	11930	1116	39	1	121	1	PIN1	19	9949168	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	942790	9949168	49179815	210	18288											
DOCK6	57572	ucsc.edu;bcgsc.ca	37	19	11346345	11346345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK6	NM_020812	exon21	c.A2483G	p.H828R	GGGCAGTGACCGC	.	47	4	49	0	.	93	C	11346345	T	C	11346345	3	2	142	1	0	0	0	0	1	0	0	0	4691	1696	59	2	3772	2	DOCK6	19	11346345	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	1397177	11346345	47782638	211	18289											
CACNA1A	773	broad.mit.edu;bcgsc.ca	37	19	13476249	13476249	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNA1A	NM_001127221	exon5	c.G666T	p.A222A	GATCATCGCCTTC	.	83	6	85	2	.	67	A	13476249	C	A	13476249	2	1	142	1	0	0	0	0	0	0	0	1	2538	871	31	1		1	CACNA1A	19	13476249	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	2129904	13476249	45652734	212	18290											
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17317097	17317097	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO9B	NM_001130065	exon33	c.C5298T	p.A1766A	CCACGCCATCACA	.	33	5	60	0	.	67	T	17317097	C	T	17317097	2	4	142	1	0	0	0	0	0	0	0	1	10085	581	21	3		3	MYO9B	19	17317097	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3840848	17317097	41811886	213	18291											
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36216120	36216120	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MLL4	NM_014727	exon11	c.3529-1G>C	.	CCCCCAGGAGGAT	.	30	15	30	0	.	697	C	36216120	G	C	36216120	5	2	142	1	0	0	0	0	0	0	1	0	9623	1014	35	4	3570	4	MLL4	19	36216120	Splice_Site	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	18899023	36216120	22912863	214	18292											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36272086	36272086	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGAP33	NM_052948	exon12	c.T1017G	p.I339M	GTTCATTGAGGCC	.	42	19	34	0	.	229	G	36272086	T	G	36272086	3	3	142	1	0	0	0	0	1	0	0	0	882	1800	63	5	1063	5	ARHGAP33	19	36272086	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	55966	36272086	22856897	215	18293											
ZFP36	7538	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39899108	39899108	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFP36	NM_003407	exon2	c.C768A	p.C256X	CTGTTGCCCCTCC	.	67	24	71	1	.	227	A	39899108	C	A	39899108	4	1	142	1	0	0	0	0	0	1	0	0	17642	747	26	3	756	3	ZFP36	19	39899108	Nonsense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	3627022	39899108	19229875	216	18294											
ZNF546	339327	ucsc.edu;bcgsc.ca	37	19	40520384	40520384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF546	NM_178544	exon7	c.C1207T	p.H403Y	GTTCAACATCAGA	.	43	4	45	0	.	155	T	40520384	C	T	40520384	3	4	142	1	0	0	0	0	1	0	0	0	17975	478	17	3	1225	3	ZNF546	19	40520384	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	621276	40520384	18608599	217	18295											
EXOC3L2	90332	ucsc.edu;bcgsc.ca	37	19	45716529	45716529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EXOC3L2	NM_138568	exon10	c.T1028C	p.L343P	AGTTCCAGGTCCC	.	58	5	63	0	.	91	G	45716529	A	G	45716529	3	3	142	1	0	0	0	0	1	0	0	0	5305	188	7	2	205	2	EXOC3L2	19	45716529	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	5196145	45716529	13412454	218	18296											
NLRP5	126206	broad.mit.edu;bcgsc.ca	37	19	56545050	56545050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NLRP5	NM_153447	exon9	c.C2590A	p.P864T	AAACACCCAAAAT	.	195	11	175	0	.	162	A	56545050	C	A	56545050	3	1	142	1	0	0	0	0	1	0	0	0	10480	623	22	3	2624	3	NLRP5	19	56545050	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	10828521	56545050	2583933	219	18297											
ANGPT4	51378	ucsc.edu;bcgsc.ca	37	20	896833	896833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANGPT4	NM_015985	exon1	c.C25A	p.Q9K	TGCCCTGCAGCAT	.	27	4	38	0	.	92	T	896833	G	T	896833	3	4	142	1	0	0	0	0	1	0	0	0	612	1328	46	3	1522	3	ANGPT4	20	896833	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		896833	62128687	220	18298											
FERMT1	55612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6096555	6096555	+	Missense_Mutation	SNP	C	C	A	rs184921922	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FERMT1	NM_017671	exon3	c.G288T	p.M96I	GCGCAGCATTTTA	.	57	10	47	0	C|0.999;T|0.001	495	A	6096555	C	A	6096555	3	1	142	1	0	0	0	0	1	0	0	0	5817	710	25	3	1797	3	FERMT1	20	6096555	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	5199722	6096555	56928965	221	18299											
HM13	81502	ucsc.edu;bcgsc.ca	37	20	30137135	30137135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HM13	NM_178581	exon6	c.G666T	p.W222C	CTTCTGGGTGAGT	.	33	4	31	0	.	153	T	30137135	G	T	30137135	3	4	142	1	0	0	0	0	1	0	0	0	7217	1246	43	3	755	3	HM13	20	30137135	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	24040580	30137135	32888385	222	18300											
CTSZ	1522	ucsc.edu;bcgsc.ca	37	20	57570753	57570753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSZ	NM_001336	exon6	c.A863G	p.Y288C	AGGTTGTATCTGG	.	63	5	72	0	.	226	C	57570753	T	C	57570753	3	2	142	1	0	0	0	0	1	0	0	0	4043	1638	57	2	52	2	CTSZ	20	57570753	Missense_Mutation	SNP	T	TCGA-G3-A25U-01A-11D-A16V-10	27433618	57570753	5454767	223	18301											
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62311205	62311205	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RTEL1	NM_032957	exon13	c.C1113T	p.Y371Y	CAGCTACATCTTT	.	20	4	30	0	.	44	T	62311205	C	T	62311205	2	4	142	1	0	0	0	0	0	0	0	1	13720	489	17	3		3	RTEL1	20	62311205	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	4740452	62311205	714315	224	18302											
TRPM2	7226	ucsc.edu;bcgsc.ca	37	21	45837840	45837840	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPM2	NM_003307	exon21	c.G3177A	p.T1059T	GCACACGGACCAG	.	19	4	28	0	.	92	A	45837840	G	A	45837840	2	1	142	1	0	0	0	0	0	0	0	1	16583	1103	39	1		1	TRPM2	21	45837840	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10		45837840	2292055	225	18303											
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	22	40660919	40660919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNRC6B	NM_001162501	exon5	c.A685G	p.S229G	GAGAAGAGCACTC	.	28	4	39	0	.	22	G	40660919	A	G	40660919	3	3	142	1	0	0	0	0	1	0	0	0	16338	304	11	2	824	2	TNRC6B	22	40660919	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10		40660919	10643647	226	18304											
MCHR1	2847	ucsc.edu;bcgsc.ca	37	22	41077417	41077417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCHR1	NM_005297	exon2	c.A754G	p.R252G	TATGCCAGACTCA	.	38	4	53	0	.	90	G	41077417	A	G	41077417	3	3	142	1	0	0	0	0	1	0	0	0	9382	180	7	2	760	2	MCHR1	22	41077417	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	416498	41077417	10227149	227	18305											
PHEX	5251	ucsc.edu;bcgsc.ca	37	X	22196426	22196426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHEX	NM_000444	exon14	c.C1519A	p.L507I	AACGTCCTACAAA	.	45	4	67	0	.	132	A	22196426	C	A	22196426	3	1	142	1	0	0	0	0	1	0	0	0	11819	680	24	3	1573	3	PHEX	23	22196426	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10		22196426	133074134	228	18306											
DYNLT3	6990	ucsc.edu;bcgsc.ca	37	X	37701140	37701140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYNLT3	NM_006520	exon3	c.G91T	p.G31C	CACCACCTAAAAC	.	47	5	95	0	.	130	A	37701140	C	A	37701140	3	1	142	1	0	0	0	0	1	0	0	0	4853	681	24	3	271	3	DYNLT3	23	37701140	Missense_Mutation	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	15504714	37701140	117569420	229	18307											
LAS1L	81887	ucsc.edu;bcgsc.ca	37	X	64744886	64744886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAS1L	NM_031206	exon8	c.C1001A	p.P334H	AATGTGGGGACAA	.	37	4	71	0	.	196	T	64744886	G	T	64744886	3	4	142	1	0	0	0	0	1	0	0	0	8636	1232	43	3	1231	3	LAS1L	23	64744886	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	27043746	64744886	90525674	230	18308											
TEX11	56159	hgsc.bcm.edu;bcgsc.ca	37	X	70053381	70053383	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TEX11	NM_001003811	exon9	c.631_633del	p.211_211del	CCTCATCAACATA	.	173	63	178	0	.	178	-	70053383	CAA	-	70053381	7	5	142	1	0	1	0	1	0	0	0	0	15771	825	29	0	2281	0	TEX11	23	70053381	In_Frame_Del	DEL	CAA	TCGA-G3-A25U-01A-11D-A16V-10	5308495	70053381	85217179	231	18309											
NLGN3	54413	ucsc.edu;bcgsc.ca	37	X	70389119	70389119	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NLGN3	NM_181303	exon8	c.G1719A	p.P573P	CAAGCCGGTCCCC	.	37	4	40	0	.	131	A	70389119	G	A	70389119	2	1	142	1	0	0	0	0	0	0	0	1	10463	1103	39	1		1	NLGN3	23	70389119	Silent	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	335738	70389119	84881441	232	18310											
TAF1	6872	broad.mit.edu;bcgsc.ca	37	X	70597452	70597452	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF1	NM_004606	exon6	c.775-1G>T	.	GTTCTAGGTGTTA	.	228	12	224	0	.	900	T	70597452	G	T	70597452	5	4	142	1	0	0	0	0	0	0	1	0	15510	1014	35	3	796	3	TAF1	23	70597452	Splice_Site	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	208333	70597452	84673108	233	18311											
TNMD	64102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99854571	99854571	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNMD	NM_022144	exon7	c.C811A	p.R271R	TGCCGTCGAGGCA	.	61	18	81	0	.	130	A	99854571	C	A	99854571	2	1	142	1	0	0	0	0	0	0	0	1	16319	876	31	1		1	TNMD	23	99854571	Silent	SNP	C	TCGA-G3-A25U-01A-11D-A16V-10	29257119	99854571	55415989	234	18312											
BTK	695	broad.mit.edu;bcgsc.ca	37	X	100611053	100611053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTK	NM_000061	exon15	c.T1553C	p.L518P	CGGTGAAGGAACT	.	72	5	70	0	.	1395	G	100611053	A	G	100611053	3	3	142	1	0	0	0	0	1	0	0	0	1557	72	3	2	446	2	BTK	23	100611053	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	756482	100611053	54659507	235	18313											
LONRF3	79836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118148215	118148215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LONRF3	NM_001031855	exon10	c.G2020A	p.V674I	AACTGTGTCTATC	.	127	60	89	0	.	289	A	118148215	G	A	118148215	3	1	142	1	0	0	0	0	1	0	0	0	8896	1377	48	3	2058	3	LONRF3	23	118148215	Missense_Mutation	SNP	G	TCGA-G3-A25U-01A-11D-A16V-10	17537162	118148215	37122345	236	18314											
XPNPEP2	7512	ucsc.edu;bcgsc.ca	37	X	128896688	128896688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XPNPEP2	NM_003399	exon19	c.A1682T	p.D561V	ATAAGGATGGAGA	.	33	4	44	0	.	130	T	128896688	A	T	128896688	3	4	142	1	0	0	0	0	1	0	0	0	17440	333	12	4	1756	4	XPNPEP2	23	128896688	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	10748473	128896688	26373872	237	18315											
FLNA	2316	ucsc.edu;bcgsc.ca	37	X	153592415	153592415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLNA	NM_001456	exon15	c.T2255C	p.V752A	ATGCTGACGCCTC	.	31	4	45	0	.	599	G	153592415	A	G	153592415	3	3	142	1	0	0	0	0	1	0	0	0	5933	275	10	2	5824	2	FLNA	23	153592415	Missense_Mutation	SNP	A	TCGA-G3-A25U-01A-11D-A16V-10	24695727	153592415	1678145	238	18316											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10381913	10381913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF1B	NM_015074	exon22	c.A2218C	p.K740Q	AAAAAGAAGGTAT	.	80	19	63	0	.	93	C	10381913	A	C	10381913	3	2	143	1	0	0	0	0	1	0	0	0	8284	247	9	5	3789	5	KIF1B	1	10381913	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		10381913	238868708	1	18317											
PADI4	23569	ucsc.edu;bcgsc.ca	37	1	17682885	17682885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PADI4	NM_012387	exon13	c.T1489C	p.C497R	AGGTCCTGCTACA	.	44	4	46	0	.	70	C	17682885	T	C	17682885	3	2	143	1	0	0	0	0	1	0	0	0	11380	1580	55	2	1539	2	PADI4	1	17682885	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	7300972	17682885	231567736	2	18318											
C1orf213	148898	ucsc.edu;bcgsc.ca	37	1	23696028	23696028	+	RNA	SNP	T	T	C	rs147377149		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C1orf213	.	.	.	.	GTAGACTTGCAGG	.	44	4	38	0	T|1.000;C|0.000	68	C	23696028	T	C	23696028	1	2	143	0	1	0	0	0	0	0	0	0	2030	1606	56	2		2	C1orf213	1	23696028	RNA	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	6013143	23696028	225554593	3	18319											
MAST2	23139	ucsc.edu;bcgsc.ca	37	1	46472011	46472011	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAST2	NM_015112	exon8	c.A846G	p.V282V	GAGCGTACCAGAT	.	47	4	45	0	.	581	G	46472011	A	G	46472011	2	3	143	1	0	0	0	0	0	0	0	1	9325	378	14	2		2	MAST2	1	46472011	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	22775983	46472011	202778610	4	18320											
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77528691	77528691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ST6GALNAC5	NM_030965	exon5	c.T811C	p.Y271H	TATCATTATTATG	.	117	12	89	0	.	92	C	77528691	T	C	77528691	3	2	143	1	0	0	0	0	1	0	0	0	15226	1754	61	2	829	2	ST6GALNAC5	1	77528691	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	31056680	77528691	171721930	5	18321											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79356902	79356902	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELTD1	NM_022159	exon16	c.2011-1G>A	.	TTGAATCTAAAAA	.	286	40	181	0	.	24	T	79356902	C	T	79356902	5	4	143	1	0	0	0	0	0	0	1	0	5084	927	32	3	66	3	ELTD1	1	79356902	Splice_Site	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	1828211	79356902	169893719	6	18322											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103343720	103343720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon67	c.C5312A	p.S1771Y	TTTCTGGACTGTA	.	103	14	48	0	.	586	T	103343720	G	T	103343720	3	4	143	1	0	0	0	0	1	0	0	0	3667	1188	41	3	148	3	COL11A1	1	103343720	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	23986818	103343720	145906901	7	18323											
COL11A1	1301	broad.mit.edu;bcgsc.ca	37	1	103481238	103481238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon12	c.A1510G	p.M504V	TCAACATAGTACC	.	260	13	223	1	.	586	C	103481238	T	C	103481238	3	2	143	1	0	0	0	0	1	0	0	0	3667	1406	49	2	4170	2	COL11A1	1	103481238	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	137518	103481238	145769383	8	18324											
HIPK1	204851	ucsc.edu;bcgsc.ca	37	1	114515662	114515662	+	Missense_Mutation	SNP	C	C	A	rs17853522	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIPK1	NM_198268	exon16	c.C3161A	p.A1054E	CATCGGCGGCTCC	.	43	4	44	0	C|0.999;T|0.001	361	A	114515662	C	A	114515662	3	1	143	1	0	0	0	0	1	0	0	0	7116	768	27	1	3321	1	HIPK1	1	114515662	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	11034424	114515662	134734959	9	18325											
NOTCH2	4853	ucsc.edu;bcgsc.ca	37	1	120529625	120529625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOTCH2	NM_001200001	exon5	c.G832T	p.G278W	TGACCCCATCCAC	.	38	4	29	0	.	1441	A	120529625	C	A	120529625	3	1	143	1	0	0	0	0	1	0	0	0	10548	594	21	3	6703	3	NOTCH2	1	120529625	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	6013963	120529625	128720996	10	18326											
FCGR3B	2215	broad.mit.edu;bcgsc.ca	37	1	161600871	161600871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FCGR3B	NM_001271035	exon1	c.T122G	p.L41R	GGGAGGAGCAGCT	.	82	8	103	0	.	22	C	161600871	A	C	161600871	3	2	143	1	0	0	0	0	1	0	0	0	5785	304	11	5	707	5	FCGR3B	1	161600871	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	41071246	161600871	87649750	11	18327											
UCK2	7371	broad.mit.edu;ucsc.edu	37	1	165859537	165859537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UCK2	NM_012474	exon2	c.C196T	p.R66C	TTCTACCGTGTCC	.	69	5	77	0	.	91	T	165859537	C	T	165859537	3	4	143	1	0	0	0	0	1	0	0	0	16921	652	23	1	202	1	UCK2	1	165859537	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	4258666	165859537	83391084	12	18328											
TNN	63923	ucsc.edu;bcgsc.ca	37	1	175097282	175097282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TNN	NM_022093	exon14	c.T3160C	p.S1054P	AATGTATCCACCA	.	36	4	40	0	.	138	C	175097282	T	C	175097282	3	2	143	1	0	0	0	0	1	0	0	0	16320	1435	50	2	3210	2	TNN	1	175097282	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	9237745	175097282	74153339	13	18329											
KIF21B	23046	broad.mit.edu;bcgsc.ca	37	1	200959272	200959272	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF21B	NM_017596	exon20	c.G3024A	p.E1008E	CTTGGTCTCCTCC	.	100	10	128	1	.	96	T	200959272	C	T	200959272	2	4	143	1	0	0	0	0	0	0	0	1	8289	912	32	3		3	KIF21B	1	200959272	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	25861990	200959272	48291349	14	18330											
CYB5R1	51706	ucsc.edu;bcgsc.ca	37	1	202935660	202935660	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYB5R1	NM_016243	exon3	c.T234C	p.P78P	ACCCACAGGCAGC	.	41	4	53	0	.	91	G	202935660	A	G	202935660	2	3	143	1	0	0	0	0	0	0	0	1	4126	175	7	2		2	CYB5R1	1	202935660	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	1976388	202935660	46314961	15	18331											
ELK4	2005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205588972	205588972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELK4	NM_021795	exon3	c.G1202A	p.C401Y	GTCACACATAACC	.	103	17	82	0	.	658	T	205588972	C	T	205588972	3	4	143	1	0	0	0	0	1	0	0	0	5061	478	17	3	243	3	ELK4	1	205588972	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	2653312	205588972	43661649	16	18332											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216538320	216538320	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USH2A	NM_007123	exon4	c.T759C	p.T253T	TTGCACAGTACCA	.	110	18	74	0	.	115	G	216538320	A	G	216538320	2	3	143	1	0	0	0	0	0	0	0	1	17033	175	7	2		2	USH2A	1	216538320	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	10949348	216538320	32712301	17	18333											
WDR26	80232	broad.mit.edu;bcgsc.ca	37	1	224588723	224588723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR26	NM_025160	exon9	c.A1348G	p.T450A	CACTTGTCAAACT	.	64	5	59	0	.	90	C	224588723	T	C	224588723	3	2	143	1	0	0	0	0	1	0	0	0	17280	1667	58	2	661	2	WDR26	1	224588723	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	8050403	224588723	24661898	18	18334											
KIAA1804	0	broad.mit.edu;bcgsc.ca	37	1	233512249	233512249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1804	NM_032435	exon8	c.G1900T	p.A634S	CCCTTGGCTTCAT	.	100	10	90	1	.	523	T	233512249	G	T	233512249	3	4	143	1	0	0	0	0	1	0	0	0	8259	1203	42	3	1930	3	KIAA1804	1	233512249	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	8923526	233512249	15738372	19	18335											
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211485	249211485	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGBD2	NM_170725	exon3	c.C702T	p.N234N	TAACAACGAACTT	.	42	8	37	0	.	91	T	249211485	C	T	249211485	2	4	143	1	0	0	0	0	0	0	0	1	11781	535	19	1		1	PGBD2	1	249211485	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	15699236	249211485	39136	20	18336											
BIRC6	57448	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32626685	32626685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BIRC6	NM_016252	exon8	c.G1412A	p.G471E	TGGAAGGAGATAG	.	97	10	86	1	.	233	A	32626685	G	A	32626685	3	1	143	1	0	0	0	0	1	0	0	0	1438	1174	41	3	1442	3	BIRC6	2	32626685	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10		32626685	210572688	21	18337											
SPTBN1	6711	ucsc.edu;bcgsc.ca	37	2	54885138	54885138	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPTBN1	NM_003128	exon30	c.A6198G	p.A2066A	GTCTGCAGCAACC	.	42	4	36	0	.	140	G	54885138	A	G	54885138	2	3	143	1	0	0	0	0	0	0	0	1	15118	175	7	2		2	SPTBN1	2	54885138	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	22258453	54885138	188314235	22	18338											
SMYD5	10322	ucsc.edu;bcgsc.ca	37	2	73447311	73447311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMYD5	NM_006062	exon3	c.A338G	p.H113R	GTCCCCATTGCCA	.	30	4	39	0	.	226	G	73447311	A	G	73447311	3	3	143	1	0	0	0	0	1	0	0	0	14825	217	8	2	348	2	SMYD5	2	73447311	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	18562173	73447311	169752062	23	18339											
PROM2	150696	ucsc.edu;bcgsc.ca	37	2	95942074	95942074	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PROM2	NM_001165977	exon4	c.C597T	p.G199G	CTGGGGCCTGGTC	.	30	4	64	0	.	91	T	95942074	C	T	95942074	2	4	143	1	0	0	0	0	0	0	0	1	12556	726	26	3		3	PROM2	2	95942074	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	22494763	95942074	147257299	24	18340											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	109347859	109347859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon4	c.G334T	p.G112X	ACTGATGGAAGAG	.	841	110	858	0	.	675	T	109347859	G	T	109347859	4	4	143	1	0	0	0	0	0	1	0	0	13028	1349	47	3	348	3	RANBP2	2	109347859	Nonsense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	13405785	109347859	133851514	25	18341											
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109392308	109392308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon24	c.T8413C	p.S2805P	ATTAGTTCACCAT	.	45	5	34	1	.	675	C	109392308	T	C	109392308	3	2	143	1	0	0	0	0	1	0	0	0	13028	1783	62	2	8507	2	RANBP2	2	109392308	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	44449	109392308	133807065	26	18342											
MERTK	10461	ucsc.edu;bcgsc.ca	37	2	112702624	112702624	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MERTK	NM_006343	exon3	c.C570T	p.Y190Y	CATCTACATCGAA	.	40	4	30	0	.	1463	T	112702624	C	T	112702624	2	4	143	1	0	0	0	0	0	0	0	1	9479	489	17	3		3	MERTK	2	112702624	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	3310316	112702624	130496749	27	18343											
PAX8	7849	ucsc.edu;bcgsc.ca	37	2	114004482	114004482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PAX8	NM_013952	exon3	c.A40G	p.N14D	GCTGGTTCAGCCC	.	40	4	48	0	.	684	C	114004482	T	C	114004482	3	2	143	1	0	0	0	0	1	0	0	0	11485	1783	62	2	1227	2	PAX8	2	114004482	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	1301858	114004482	129194891	28	18344											
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144903283	144903283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GTDC1	NM_001006636	exon5	c.T203A	p.L68H	AGGTTAAGCACTG	.	61	7	33	0	.	91	T	144903283	A	T	144903283	3	4	143	1	0	0	0	0	1	0	0	0	6851	72	3	4	1205	4	GTDC1	2	144903283	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	30898801	144903283	98296090	29	18345											
CIR1	9541	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175244954	175244954	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CIR1	NM_004882	exon6	c.C342T	p.I114I	ATCTCTGATGTTC	.	144	17	96	0	.	153	A	175244954	G	A	175244954	2	1	143	1	0	0	0	0	0	0	0	1	3432	1280	45	3		3	CIR1	2	175244954	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	30341671	175244954	67954419	30	18346											
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179416798	179416798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon335	c.T90829C	p.S30277P	CACTTGAACACAC	.	116	6	102	0	.	636	G	179416798	A	G	179416798	3	3	143	1	0	0	0	0	1	0	0	0	16732	246	9	2	17262	2	TTN	2	179416798	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	4171844	179416798	63782575	31	18347											
PMS1	5378	hgsc.bcm.edu;broad.mit.edu	37	2	190719433	190719433	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PMS1	NM_001128144	exon9	c.1435delG	p.G479fs	GAGAGTGGGGAAA	.	132	14	88	0	.	1396	-	190719433	G	-	190719433	7	5	143	1	0	1	0	1	0	0	0	0	12142	1348	47	0	1465	0	PMS1	2	190719433	Frame_Shift_Del	DEL	G	TCGA-G3-A25V-01A-11D-A16V-10	11302635	190719433	52479940	32	18348											
FAM124B	79843	ucsc.edu;bcgsc.ca	37	2	225265789	225265789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM124B	NM_024785	exon1	c.A697G	p.T233A	CCTGAGTCTGCCA	.	26	4	38	0	.	92	C	225265789	T	C	225265789	3	2	143	1	0	0	0	0	1	0	0	0	5426	1667	58	2	769	2	FAM124B	2	225265789	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	34546356	225265789	17933584	33	18349											
ESPNL	339768	ucsc.edu;bcgsc.ca	37	2	239010582	239010582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ESPNL	NM_194312	exon2	c.G295T	p.D99Y	TGGTAGGACCAAG	.	20	4	47	0	.	69	T	239010582	G	T	239010582	3	4	143	1	0	0	0	0	1	0	0	0	5255	1188	41	3	301	3	ESPNL	2	239010582	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	13744793	239010582	4188791	34	18350											
EFHB	151651	ucsc.edu;bcgsc.ca	37	3	19962061	19962061	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EFHB	NM_144715	exon3	c.790-2A>G	.	CCTGCCTTTGGGG	.	39	5	51	0	.	22	C	19962061	T	C	19962061	5	2	143	1	0	0	0	0	0	0	1	0	4945	1623	56	2	1761	2	EFHB	3	19962061	Splice_Site	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10		19962061	178060369	35	18351											
TMPPE	643853	ucsc.edu;bcgsc.ca	37	3	33135113	33135113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMPPE	NM_001039770	exon2	c.C575A	p.T192N	TCCACAGTTTTCA	.	49	5	45	0	.	90	T	33135113	G	T	33135113	3	4	143	1	0	0	0	0	1	0	0	0	16235	1029	36	3	790	3	TMPPE	3	33135113	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	13173052	33135113	164887317	36	18352											
KLHL18	23276	ucsc.edu;bcgsc.ca	37	3	47376272	47376272	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KLHL18	NM_025010	exon6	c.T861C	p.A287A	CATCGCTGGACTT	.	40	4	48	0	.	90	C	47376272	T	C	47376272	2	2	143	1	0	0	0	0	0	0	0	1	8373	1567	55	2		2	KLHL18	3	47376272	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	14241159	47376272	150646158	37	18353											
IMPDH2	3615	ucsc.edu;bcgsc.ca	37	3	49066740	49066740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMPDH2	NM_000884	exon1	c.A44G	p.D15G	CCGTCGTCTGGCA	.	21	4	25	0	.	227	C	49066740	T	C	49066740	3	2	143	1	0	0	0	0	1	0	0	0	7727	1667	58	2	1556	2	IMPDH2	3	49066740	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	1690468	49066740	148955690	38	18354											
AMT	275	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49458964	49458964	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMT	NM_001164712	exon3	c.T300C	p.S100S	CACTAGACTCTCC	.	87	9	82	0	.	91	G	49458964	A	G	49458964	2	3	143	1	0	0	0	0	0	0	0	1	589	272	10	2		2	AMT	3	49458964	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	392224	49458964	148563466	39	18355											
RAD54L2	23132	ucsc.edu;bcgsc.ca	37	3	51696480	51696480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RAD54L2	NM_015106	exon22	c.A3448G	p.R1150G	AACGGCAGACACA	.	44	4	55	0	.	93	G	51696480	A	G	51696480	3	3	143	1	0	0	0	0	1	0	0	0	12994	180	7	2	3530	2	RAD54L2	3	51696480	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	2237516	51696480	146325950	40	18356											
DNAH1	25981	ucsc.edu;bcgsc.ca	37	3	52388935	52388935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH1	NM_015512	exon21	c.T3557C	p.I1186T	CCTACATCCTGAA	.	46	4	50	0	.	67	C	52388935	T	C	52388935	3	2	143	1	0	0	0	0	1	0	0	0	4597	1435	50	2	3635	2	DNAH1	3	52388935	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	692455	52388935	145633495	41	18357											
ITIH3	3699	ucsc.edu;bcgsc.ca	37	3	52828855	52828855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITIH3	NM_002217	exon1	c.T36C	p.A12A	CTTGGCTCTGCTC	.	44	4	37	1	.	93	C	52828855	T	C	52828855	2	2	143	1	0	0	0	0	0	0	0	1	7905	1538	54	2		2	ITIH3	3	52828855	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	439920	52828855	145193575	42	18358											
CACNA1D	776	ucsc.edu;bcgsc.ca	37	3	53835346	53835346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CACNA1D	NM_000720	exon43	c.C5362T	p.H1788Y	GCTGCCCATGGAA	.	42	4	53	0	.	100	T	53835346	C	T	53835346	3	4	143	1	0	0	0	0	1	0	0	0	2541	594	21	3	5640	3	CACNA1D	3	53835346	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	1006491	53835346	144187084	43	18359											
CPOX	1371	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98304402	98304402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CPOX	NM_000097	exon5	c.G1055T	p.R352L	ACAAAGCGAAACA	.	75	6	71	0	.	90	A	98304402	C	A	98304402	3	1	143	1	0	0	0	0	1	0	0	0	3821	768	27	1	321	1	CPOX	3	98304402	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	44469056	98304402	99718028	44	18360											
TIGIT	201633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	114018501	114018501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIGIT	NM_173799	exon3	c.T449C	p.L150P	CGACGCTGGTGGT	.	35	7	33	0	.	90	C	114018501	T	C	114018501	3	2	143	1	0	0	0	0	1	0	0	0	15899	1580	55	2	459	2	TIGIT	3	114018501	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	15714099	114018501	84003929	45	18361											
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu	37	3	127642837	127642838	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KBTBD12	NM_207335	exon1	c.933_934insTCA	p.I311delinsIS	TTTCATCTCATCT	.	176	24	127	0	.	23	TCA	127642838	-	TCA	127642837	7	5	143	1	0	1	1	0	0	0	0	0	7991	903	32	0	935	0	KBTBD12	3	127642837	In_Frame_Ins	INS	-	TCGA-G3-A25V-01A-11D-A16V-10	13624336	127642837	70379593	46	18362											
TOPBP1	11073	ucsc.edu;bcgsc.ca	37	3	133331301	133331301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TOPBP1	NM_007027	exon24	c.G3967T	p.A1323S	CAGCTGCCACTGA	.	43	4	38	0	.	540	A	133331301	C	A	133331301	3	1	143	1	0	0	0	0	1	0	0	0	16366	739	26	3	621	3	TOPBP1	3	133331301	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	5688464	133331301	64691129	47	18363											
CHST2	9435	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	142841015	142841015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHST2	NM_004267	exon2	c.C1357T	p.Q453X	ATGGAGCAGTTTG	.	74	11	86	0	.	93	T	142841015	C	T	142841015	4	4	143	1	0	0	0	0	0	1	0	0	3404	711	25	3	1359	3	CHST2	3	142841015	Nonsense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	9509714	142841015	55181415	48	18364											
MFSD1	64747	ucsc.edu;bcgsc.ca	37	3	158537505	158537505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MFSD1	NM_022736	exon8	c.G867T	p.E289D	AGCAGAGAGAATC	.	46	4	46	0	.	90	T	158537505	G	T	158537505	3	4	143	1	0	0	0	0	1	0	0	0	9527	933	33	3	897	3	MFSD1	3	158537505	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	15696490	158537505	39484925	49	18365											
LRRC31	79782	ucsc.edu;bcgsc.ca	37	3	169565938	169565938	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC31	NM_024727	exon8	c.C1297C	p.L433L	CCAGGGAACAGCT	.	37	4	30	0	.	93	G	169565938	A	G	169565938	2	3	143	1	0	0	0	0	0	0	0	1	8986	246	9	2		2	LRRC31	3	169565938	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	11028433	169565938	28456492	50	18366											
MCF2L2	23101	ucsc.edu;bcgsc.ca	37	3	183145765	183145765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2L2	NM_015078	exon1	c.A1G	p.M1V	ACAGCATTTCACT	.	48	5	43	0	.	293	C	183145765	T	C	183145765	3	2	143	1	0	0	0	0	1	0	0	0	9380	1493	52	2	3463	2	MCF2L2	3	183145765	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	13579827	183145765	14876665	51	18367											
TBCCD1	55171	ucsc.edu;bcgsc.ca	37	3	186272531	186272531	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TBCCD1	NM_001134415	exon6	c.A1056G	p.T352T	CTCAATTGTCACA	.	38	4	38	0	.	108	C	186272531	T	C	186272531	2	2	143	1	0	0	0	0	0	0	0	1	15629	1799	63	2		2	TBCCD1	3	186272531	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	3126766	186272531	11749899	52	18368											
GAK	2580	ucsc.edu;bcgsc.ca	37	4	887731	887731	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAK	NM_005255	exon8	c.C808A	p.R270R	CTATTCGAAGTTT	.	50	4	95	0	.	568	T	887731	G	T	887731	2	4	143	1	0	0	0	0	0	0	0	1	6195	1066	37	1		1	GAK	4	887731	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10		887731	190266545	53	18369											
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3491480	3491480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOK7	NM_001164673	exon6	c.G718A	p.A240T	GGAGAAGCGGCTG	.	50	5	64	0	.	91	A	3491480	G	A	3491480	3	1	143	1	0	0	0	0	1	0	0	0	4702	971	34	3	751	3	DOK7	4	3491480	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	2603749	3491480	187662796	54	18370											
SPP1	6696	ucsc.edu;bcgsc.ca	37	4	88901220	88901220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPP1	NM_001251830	exon5	c.C155A	p.A52D	CAGATGCTGTGGC	.	44	4	30	0	.	555	A	88901220	C	A	88901220	3	1	143	1	0	0	0	0	1	0	0	0	15085	797	28	3	126	3	SPP1	4	88901220	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	85409740	88901220	102253056	55	18371											
DNAH5	1767	broad.mit.edu;bcgsc.ca	37	5	13716732	13716732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH5	NM_001369	exon74	c.A12773G	p.D4258G	TCATAGTCGTCAG	.	106	8	99	0	.	182	C	13716732	T	C	13716732	3	2	143	1	0	0	0	0	1	0	0	0	4604	1667	58	2	1125	2	DNAH5	5	13716732	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10		13716732	167198528	56	18372											
SLC1A3	6507	ucsc.edu;bcgsc.ca	37	5	36684024	36684024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC1A3	NM_004172	exon9	c.A1348G	p.T450A	CTGGTCACTATGG	.	57	5	62	0	.	90	G	36684024	A	G	36684024	3	3	143	1	0	0	0	0	1	0	0	0	14433	159	6	2	1395	2	SLC1A3	5	36684024	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	22967292	36684024	144231236	57	18373											
CDK7	1022	ucsc.edu;bcgsc.ca	37	5	68555712	68555712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDK7	NM_001799	exon7	c.C476A	p.A159D	GCCTGGCCAAATC	.	43	4	36	0	.	964	A	68555712	C	A	68555712	3	1	143	1	0	0	0	0	1	0	0	0	3149	739	26	3	502	3	CDK7	5	68555712	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	31871688	68555712	112359548	58	18374											
PRR16	51334	ucsc.edu;bcgsc.ca	37	5	120021742	120021742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRR16	NM_016644	exon3	c.A184G	p.S62G	AGCTCAAGTGGCA	.	29	4	25	0	.	71	G	120021742	A	G	120021742	3	3	143	1	0	0	0	0	1	0	0	0	12589	72	3	2	190	2	PRR16	5	120021742	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	51466030	120021742	60893518	59	18375											
P4HA2	8974	ucsc.edu;bcgsc.ca	37	5	131531150	131531150	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	P4HA2	NM_004199	exon13	c.T1395C	p.G465G	GGTGGCACCACCA	.	37	4	41	0	.	68	G	131531150	A	G	131531150	2	3	143	1	0	0	0	0	0	0	0	1	11357	146	6	2		2	P4HA2	5	131531150	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	11509408	131531150	49384110	60	18376											
GDF9	2661	ucsc.edu;bcgsc.ca	37	5	132197841	132197841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GDF9	NM_005260	exon2	c.G805A	p.D269N	TTGTGTCATTCAA	.	43	4	36	0	.	227	T	132197841	C	T	132197841	3	4	143	1	0	0	0	0	1	0	0	0	6319	826	29	3	563	3	GDF9	5	132197841	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	666691	132197841	48717419	61	18377											
GCNT2	2651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10586875	10586875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GCNT2	NM_145655	exon1	c.G653T	p.G218V	CCCCAGGGGTGCT	.	88	16	91	0	.	92	T	10586875	G	T	10586875	3	4	143	1	0	0	0	0	1	0	0	0	6301	1232	43	3	2507	3	GCNT2	6	10586875	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10		10586875	160528192	62	18378											
BTN3A1	11119	ucsc.edu;bcgsc.ca	37	6	26413718	26413718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BTN3A1	NM_007048	exon10	c.C1340T	p.P447L	CTGAGCCCAGAAC	.	59	5	70	0	.	92	T	26413718	C	T	26413718	3	4	143	1	0	0	0	0	1	0	0	0	1562	623	22	3	1542	3	BTN3A1	6	26413718	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	15826843	26413718	144701349	63	18379											
ABT1	29777	ucsc.edu;bcgsc.ca	37	6	26598733	26598733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABT1	NM_013375	exon3	c.C679T	p.R227W	GCAGCACGGCCAG	.	50	4	44	0	.	91	T	26598733	C	T	26598733	3	4	143	1	0	0	0	0	1	0	0	0	101	527	19	1	689	1	ABT1	6	26598733	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	185015	26598733	144516334	64	18380											
DHX16	8449	ucsc.edu;bcgsc.ca	37	6	30633483	30633483	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DHX16	NM_003587	exon5	c.C694A	p.R232R	ACTCTCGGCGAGA	.	16	4	21	0	.	228	T	30633483	G	T	30633483	2	4	143	1	0	0	0	0	0	0	0	1	4502	1124	39	1		1	DHX16	6	30633483	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	4034750	30633483	140481584	65	18381											
APOM	55937	ucsc.edu;bcgsc.ca	37	6	31625487	31625487	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOM	NM_019101	exon5	c.T528C	p.T176T	ATTGACTCCTAGG	.	32	4	44	0	.	90	C	31625487	T	C	31625487	2	2	143	1	0	0	0	0	0	0	0	1	812	1538	54	2		2	APOM	6	31625487	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	992004	31625487	139489580	66	18382											
SCUBE3	222663	ucsc.edu;bcgsc.ca	37	6	35201068	35201068	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCUBE3	NM_152753	exon6	c.G702A	p.K234K	CGGGAAGACATGC	.	52	4	52	0	.	91	A	35201068	G	A	35201068	2	1	143	1	0	0	0	0	0	0	0	1	13946	933	33	3		3	SCUBE3	6	35201068	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	3575581	35201068	135913999	67	18383											
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38899596	38899596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH8	NM_001206927	exon76	c.G11284T	p.G3762C	AAAGTCGGTGATA	.	153	8	77	0	.	615	T	38899596	G	T	38899596	3	4	143	1	0	0	0	0	1	0	0	0	4607	1116	39	1	10919	1	DNAH8	6	38899596	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	3698528	38899596	132215471	68	18384											
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46847716	46847716	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR116	NM_015234	exon9	c.875delT	p.V292fs	TCACACACCAGAC	.	90	15	82	0	.	91	-	46847716	A	-	46847716	7	5	143	1	0	1	0	1	0	0	0	0	6633	159	6	0	3217	0	GPR116	6	46847716	Frame_Shift_Del	DEL	A	TCGA-G3-A25V-01A-11D-A16V-10	7948120	46847716	124267351	69	18385											
EEF1A1	1915	broad.mit.edu;bcgsc.ca	37	6	74227627	74227627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.C1295T	p.T432I	GCAACTGTCTGTC	.	113	16	84	0	.	226	A	74227627	G	A	74227627	3	1	143	1	0	0	0	0	1	0	0	0	4923	1377	48	3	97	3	EEF1A1	6	74227627	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	27379911	74227627	96887440	70	18386	102	2									
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227628	74227628	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.A1294T	p.T432S	CAACTGTCTGTCT	.	113	18	84	0	.	226	A	74227628	T	A	74227628	3	1	143	1	0	0	0	0	1	0	0	0	4923	1667	58	4	98	4	EEF1A1	6	74227628	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	1	74227628	96887439	71	18387	102	2									
IMPG1	3617	ucsc.edu;bcgsc.ca	37	6	76660465	76660465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMPG1	NM_001563	exon13	c.C1638A	p.F546L	CTCCAAGAAATGA	.	35	4	26	0	.	93	T	76660465	G	T	76660465	3	4	143	1	0	0	0	0	1	0	0	0	7728	933	33	3	775	3	IMPG1	6	76660465	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	2432837	76660465	94454602	72	18388											
PDSS2	57107	ucsc.edu;bcgsc.ca	37	6	107655522	107655522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDSS2	NM_020381	exon2	c.A311G	p.D104G	CAGCTGTCATGTA	.	38	5	23	0	.	92	C	107655522	T	C	107655522	3	2	143	1	0	0	0	0	1	0	0	0	11694	1667	58	2	916	2	PDSS2	6	107655522	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	30995057	107655522	63459545	73	18389											
PTPRK	5796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	128326319	128326319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPRK	NM_001135648	exon15	c.A2404G	p.M802V	GATCCATTGCATT	.	72	7	52	0	.	231	C	128326319	T	C	128326319	3	2	143	1	0	0	0	0	1	0	0	0	12805	1493	52	2	2004	2	PTPRK	6	128326319	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	20670797	128326319	42788748	74	18390											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21940749	21940749	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH11	.	.	.	.	GACCTACGAGTGC	.	41	8	63	0	.	146	T	21940749	C	T	21940749	2	4	143	1	0	0	0	0	0	0	0	1	4599	547	19	1		1	DNAH11	7	21940749	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10		21940749	137197914	75	18391											
PKD1L1	168507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47937789	47937789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKD1L1	NM_138295	exon14	c.A2067G	p.I689M	CCTCCATATCTAA	.	29	4	30	0	.	145	C	47937789	T	C	47937789	3	2	143	1	0	0	0	0	1	0	0	0	11964	1396	49	2	6658	2	PKD1L1	7	47937789	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	25997040	47937789	111200874	76	18392											
CRCP	27297	ucsc.edu;bcgsc.ca	37	7	65617296	65617296	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CRCP	NM_014478	exon6	c.G399A	p.K133K	GCAGAAGAAGAAT	.	34	4	38	0	.	90	A	65617296	G	A	65617296	2	1	143	1	0	0	0	0	0	0	0	1	3852	933	33	3		3	CRCP	7	65617296	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	17679507	65617296	93521367	77	18393											
LMTK2	22853	ucsc.edu;bcgsc.ca	37	7	97823273	97823273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LMTK2	NM_014916	exon11	c.T3496C	p.S1166P	TGTCTGTCTGCTT	.	29	4	30	0	.	1381	C	97823273	T	C	97823273	3	2	143	1	0	0	0	0	1	0	0	0	8859	1667	58	2	3538	2	LMTK2	7	97823273	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	32205977	97823273	61315390	78	18394											
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101671397	101671397	+	Missense_Mutation	SNP	C	C	T	rs143267032	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CUX1	NM_181500	exon3	c.C194T	p.A65V	AGGTAGCGCCGCT	.	81	9	82	0	C|1.000;G|0.000	160	T	101671397	C	T	101671397	3	4	143	1	0	0	0	0	1	0	0	0	4064	768	27	1	238	1	CUX1	7	101671397	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	3848124	101671397	57467266	79	18395											
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135330244	135330244	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUP205	NM_015135	exon41	c.T5712G	p.L1904L	TATTCTTTGGCGC	.	184	23	125	0	.	207	G	135330244	T	G	135330244	2	3	143	1	0	0	0	0	0	0	0	1	10759	1828	64	5		5	NUP205	7	135330244	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	33658847	135330244	23808419	80	18396											
ZYX	7791	ucsc.edu;bcgsc.ca	37	7	143087737	143087737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZYX	NM_003461	exon10	c.C1681A	p.L561I	CACGTGCTCTGTC	.	36	4	36	0	.	90	A	143087737	C	A	143087737	3	1	143	1	0	0	0	0	1	0	0	0	18251	797	28	3	1715	3	ZYX	7	143087737	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	7757493	143087737	16050926	81	18397											
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154645528	154645528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPP6	NM_130797	exon17	c.G1705T	p.D569Y	ACAACAGATAAGA	.	154	41	145	0	.	652	T	154645528	G	T	154645528	3	4	143	1	0	0	0	0	1	0	0	0	4730	942	33	3	1887	3	DPP6	7	154645528	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	11557791	154645528	4493135	82	18398											
RBM33	155435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155457902	155457902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBM33	NM_053043	exon2	c.C77G	p.A26G	CTGGCGCGGAACG	.	103	20	87	1	.	23	G	155457902	C	G	155457902	3	3	143	1	0	0	0	0	1	0	0	0	13130	768	27	4	83	4	RBM33	7	155457902	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	812374	155457902	3680761	83	18399											
ZNF395	55893	ucsc.edu;bcgsc.ca	37	8	28218433	28218433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF395	NM_018660	exon2	c.T209C	p.L70P	TGCTGAAGGCCCG	.	24	4	33	0	.	90	G	28218433	A	G	28218433	3	3	143	1	0	0	0	0	1	0	0	0	17878	72	3	2	1368	2	ZNF395	8	28218433	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		28218433	118145589	84	18400											
ATP6V1H	51606	ucsc.edu;bcgsc.ca	37	8	54742070	54742070	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP6V1H	NM_015941	exon4	c.G240T	p.L80L	AGTCATCAGATTT	.	45	4	25	0	.	90	A	54742070	C	A	54742070	2	1	143	1	0	0	0	0	0	0	0	1	1189	813	29	3		3	ATP6V1H	8	54742070	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	26523637	54742070	91621952	85	18401											
PABPC1	26986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101718907	101718907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PABPC1	NM_002568	exon11	c.A1574G	p.N525S	TGTGCATTAAGAT	.	134	16	87	0	.	68	C	101718907	T	C	101718907	3	2	143	1	0	0	0	0	1	0	0	0	11363	1493	52	2	352	2	PABPC1	8	101718907	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	46976837	101718907	44645115	86	18402											
FREM1	158326	ucsc.edu;bcgsc.ca	37	9	14851597	14851597	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FREM1	NM_144966	exon7	c.T837C	p.S279S	CCACGCACTCTCT	.	38	4	27	0	.	138	G	14851597	A	G	14851597	2	3	143	1	0	0	0	0	0	0	0	1	6044	156	6	2		2	FREM1	9	14851597	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		14851597	126361834	87	18403											
APTX	54840	ucsc.edu;bcgsc.ca	37	9	33001565	33001565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APTX	NM_001195252	exon1	c.G38T	p.R13I	CCTTACCTCCAGA	.	25	4	23	0	.	91	A	33001565	C	A	33001565	3	1	143	1	0	0	0	0	1	0	0	0	820	695	24	3	1073	3	APTX	9	33001565	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	18149968	33001565	108211866	88	18404											
TLE4	7091	ucsc.edu;bcgsc.ca	37	9	82334962	82334962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLE4	NM_007005	exon16	c.A1592G	p.N531S	TACAGAACAGGGA	.	43	4	39	0	.	524	G	82334962	A	G	82334962	3	3	143	1	0	0	0	0	1	0	0	0	15938	57	2	2	1654	2	TLE4	9	82334962	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	49333397	82334962	58878469	89	18405											
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96870207	96870207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPDC1	NM_001253829	exon9	c.G2408A	p.G803D	AAGATGGCCCTAA	.	131	11	78	0	.	227	A	96870207	G	A	96870207	3	1	143	1	0	0	0	0	1	0	0	0	12773	1203	42	3	2522	3	PTPDC1	9	96870207	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	14535245	96870207	44343224	90	18406											
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101829192	101829192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL15A1	NM_001855	exon40	c.T3680C	p.F1227S	TGCCATTTTCTGG	.	46	8	45	0	.	96	C	101829192	T	C	101829192	3	2	143	1	0	0	0	0	1	0	0	0	3672	1841	64	2	3838	2	COL15A1	9	101829192	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	4958985	101829192	39384239	91	18407											
C9orf152	401546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	112963511	112963511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C9orf152	NM_001012993	exon2	c.G437A	p.G146E	TCAGATCCCACAA	.	107	18	141	0	.	90	T	112963511	C	T	112963511	3	4	143	1	0	0	0	0	1	0	0	0	2463	855	30	3	286	3	C9orf152	9	112963511	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	11134319	112963511	28249920	92	18408											
ITGA8	8516	ucsc.edu;bcgsc.ca	37	10	15760772	15760772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGA8	NM_003638	exon2	c.C336A	p.D112E	GGTGGTGTCAAAC	.	42	4	47	0	.	230	T	15760772	G	T	15760772	3	4	143	1	0	0	0	0	1	0	0	0	7882	1368	48	3	2971	3	ITGA8	10	15760772	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10		15760772	119773975	93	18409											
PLAU	5328	ucsc.edu;bcgsc.ca	37	10	75672838	75672838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLAU	NM_002658	exon5	c.G350A	p.G117E	GCCTGGGGAAACA	.	42	4	42	1	.	118	A	75672838	G	A	75672838	3	1	143	1	0	0	0	0	1	0	0	0	12022	1232	43	3	402	3	PLAU	10	75672838	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	59912066	75672838	59861909	94	18410											
CALHM1	255022	ucsc.edu;bcgsc.ca	37	10	105218131	105218131	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CALHM1	NM_001001412	exon1	c.C378A	p.L126L	GGCACAGAGGAAG	.	31	4	57	0	.	91	T	105218131	G	T	105218131	2	4	143	1	0	0	0	0	0	0	0	1	2582	929	33	3		3	CALHM1	10	105218131	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	29545293	105218131	30316616	95	18411											
PHRF1	57661	ucsc.edu;bcgsc.ca	37	11	611703	611703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHRF1	NM_020901	exon18	c.A4873G	p.K1625E	GTGGACAAGTACA	.	35	4	48	0	.	22	G	611703	A	G	611703	3	3	143	1	0	0	0	0	1	0	0	0	11861	131	5	2	4939	2	PHRF1	11	611703	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		611703	134394813	96	18412											
DNAJC24	120526	broad.mit.edu;bcgsc.ca	37	11	31436406	31436406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAJC24	NM_181706	exon3	c.G160A	p.E54K	GTGGAGGAATGTG	.	97	10	68	0	.	153	A	31436406	G	A	31436406	3	1	143	1	0	0	0	0	1	0	0	0	4642	1175	41	3	166	3	DNAJC24	11	31436406	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	30824703	31436406	103570110	97	18413											
QSER1	79832	ucsc.edu;bcgsc.ca	37	11	32956305	32956305	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	QSER1	NM_001076786	exon4	c.A3114G	p.P1038P	GAACCCAGCTAGG	.	43	4	39	0	.	95	G	32956305	A	G	32956305	2	3	143	1	0	0	0	0	0	0	0	1	12882	175	7	2		2	QSER1	11	32956305	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	1519899	32956305	102050211	98	18414											
TSPAN18	90139	ucsc.edu;bcgsc.ca	37	11	44939590	44939590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TSPAN18	NM_130783	exon5	c.G326T	p.R109M	TCTTCAGGGAAAA	.	31	4	24	0	.	68	T	44939590	G	T	44939590	3	4	143	1	0	0	0	0	1	0	0	0	16639	1000	35	3	336	3	TSPAN18	11	44939590	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	11983285	44939590	90066926	99	18415											
DDB2	1643	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	47256456	47256456	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DDB2	NM_000107	exon6	c.C851A	p.S284X	TCTACTCGCTGCC	.	63	11	86	0	.	971	A	47256456	C	A	47256456	4	1	143	1	0	0	0	0	0	1	0	0	4324	893	31	1	873	1	DDB2	11	47256456	Nonsense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	2316866	47256456	87750060	100	18416											
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51411592	51411592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4A5	NM_001005272	exon1	c.G804T	p.M268I	CACAGTCATGAAC	.	87	16	71	0	.	92	A	51411592	C	A	51411592	3	1	143	1	0	0	0	0	1	0	0	0	11043	826	29	3	147	3	OR4A5	11	51411592	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	4155136	51411592	83594924	101	18417											
OR5L2	26338	ucsc.edu;bcgsc.ca	37	11	55595514	55595514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR5L2	NM_001004739	exon1	c.G820T	p.A274S	AAAGTGGCCACCG	.	50	6	43	0	.	69	T	55595514	G	T	55595514	3	4	143	1	0	0	0	0	1	0	0	0	11171	1203	42	3	822	3	OR5L2	11	55595514	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	4183922	55595514	79411002	102	18418											
PLCB3	5331	ucsc.edu;bcgsc.ca	37	11	64031511	64031511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLCB3	NM_000932	exon22	c.T2579C	p.I860T	CCCTGATCAACCC	.	49	4	62	0	.	228	C	64031511	T	C	64031511	3	2	143	1	0	0	0	0	1	0	0	0	12029	1435	50	2	2665	2	PLCB3	11	64031511	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	8435997	64031511	70975005	103	18419											
ZFPL1	7542	ucsc.edu;bcgsc.ca	37	11	64854053	64854053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZFPL1	NM_006782	exon4	c.G381T	p.W127C	CAACTGGGCCCGG	.	45	5	85	0	.	91	T	64854053	G	T	64854053	3	4	143	1	0	0	0	0	1	0	0	0	17653	1241	43	3	391	3	ZFPL1	11	64854053	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	822542	64854053	70152463	104	18420											
EIF1AD	84285	ucsc.edu;bcgsc.ca	37	11	65766855	65766855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EIF1AD	NM_001242483	exon5	c.T319C	p.S107P	CTTCAGAGAAGGC	.	44	4	41	0	.	68	G	65766855	A	G	65766855	3	3	143	1	0	0	0	0	1	0	0	0	4991	304	11	2	186	2	EIF1AD	11	65766855	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	912802	65766855	69239661	105	18421											
AMOTL1	154810	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94602492	94602492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMOTL1	NM_130847	exon12	c.A2618G	p.K873R	GCAGCAAGGACAG	.	61	5	65	0	.	91	G	94602492	A	G	94602492	3	3	143	1	0	0	0	0	1	0	0	0	583	72	3	2	2664	2	AMOTL1	11	94602492	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	28835637	94602492	40404024	106	18422											
TRPC6	7225	ucsc.edu;bcgsc.ca	37	11	101353776	101353776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPC6	NM_004621	exon5	c.C1414A	p.P472T	CATTAGGAAGGAG	.	97	10	66	0	.	93	T	101353776	G	T	101353776	3	4	143	1	0	0	0	0	1	0	0	0	16580	1174	41	3	1417	3	TRPC6	11	101353776	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	6751284	101353776	33652740	107	18423											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105623945	105623945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIA4	NM_001077244	exon4	c.G486T	p.R162S	AGACAGGGGTAAG	.	59	10	58	0	.	230	T	105623945	G	T	105623945	3	4	143	1	0	0	0	0	1	0	0	0	6770	1246	43	3	496	3	GRIA4	11	105623945	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	4270169	105623945	29382571	108	18424											
DPAGT1	1798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118967763	118967763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPAGT1	NM_001382	exon9	c.G1172A	p.S391N	ATGGCACTGCCCA	.	110	12	117	1	.	221	T	118967763	C	T	118967763	3	4	143	1	0	0	0	0	1	0	0	0	4710	565	20	3	58	3	DPAGT1	11	118967763	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	13343818	118967763	16038753	109	18425											
SCN3B	55800	ucsc.edu;bcgsc.ca	37	11	123516373	123516373	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN3B	NM_018400	exon2	c.C141A	p.S47S	CATGCAGGAGATG	.	42	5	54	0	.	156	T	123516373	G	T	123516373	2	4	143	1	0	0	0	0	0	0	0	1	13919	987	35	3		3	SCN3B	11	123516373	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	4548610	123516373	11490143	110	18426											
ATN1	1822	ucsc.edu;bcgsc.ca	37	12	7047718	7047718	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATN1	NM_001007026	exon7	c.A2592G	p.E864E	ATTTGAACCGGGC	.	35	4	40	1	.	139	G	7047718	A	G	7047718	2	3	143	1	0	0	0	0	0	0	0	1	1111	40	2	2		2	ATN1	12	7047718	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		7047718	126804177	111	18427											
A2ML1	144568	ucsc.edu;bcgsc.ca	37	12	8982345	8982345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	A2ML1	NM_144670	exon4	c.G432T	p.M144I	CACCATGGATAGC	.	39	5	35	0	.	93	T	8982345	G	T	8982345	3	4	143	1	0	0	0	0	1	0	0	0	5	1348	47	3	446	3	A2ML1	12	8982345	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	1934627	8982345	124869550	112	18428											
PZP	5858	ucsc.edu;bcgsc.ca	37	12	9333676	9333676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PZP	NM_002864	exon15	c.T1742C	p.L581P	ACTTGCAGGTGGG	.	37	5	38	0	.	157	G	9333676	A	G	9333676	3	3	143	1	0	0	0	0	1	0	0	0	12869	188	7	2	2794	2	PZP	12	9333676	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	351331	9333676	124518219	113	18429											
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10775259	10775259	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STYK1	NM_018423	exon9	c.G945T	p.L315L	ATAGAGCAGGATC	.	132	15	89	0	.	1379	A	10775259	C	A	10775259	2	1	143	1	0	0	0	0	0	0	0	1	15358	697	25	3		3	STYK1	12	10775259	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	1441583	10775259	123076636	114	18430											
STRAP	11171	ucsc.edu;bcgsc.ca	37	12	16053885	16053885	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STRAP	NM_007178	exon9	c.A930G	p.E310E	AGAAGAAGATAGT	.	43	4	36	0	.	228	G	16053885	A	G	16053885	2	3	143	1	0	0	0	0	0	0	0	1	15325	69	3	2		2	STRAP	12	16053885	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	5278626	16053885	117798010	115	18431											
TIMELESS	8914	ucsc.edu;bcgsc.ca	37	12	56814376	56814376	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIMELESS	NM_003920	exon26	c.G3205C	p.V1069L	GCCGAACCCCTAG	.	83	9	100	0	.	159	G	56814376	C	G	56814376	3	3	143	1	0	0	0	0	1	0	0	0	15901	507	18	4	437	4	TIMELESS	12	56814376	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	40760491	56814376	77037519	116	18432											
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57588784	57588784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRP1	NM_002332	exon51	c.G8208T	p.E2736D	CTCAGAGGCCCAG	.	44	4	55	0	.	596	T	57588784	G	T	57588784	3	4	143	1	0	0	0	0	1	0	0	0	8951	991	35	3	8410	3	LRP1	12	57588784	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	774408	57588784	76263111	117	18433											
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75692559	75692559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAPS2	NM_032606	exon12	c.A1009G	p.T337A	CATTTGTTCTAGA	.	95	12	76	0	.	92	C	75692559	T	C	75692559	3	2	143	1	0	0	0	0	1	0	0	0	2638	1739	60	2	692	2	CAPS2	12	75692559	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	18103775	75692559	58159336	118	18434											
CCDC60	160777	ucsc.edu;bcgsc.ca	37	12	119916935	119916935	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC60	NM_178499	exon4	c.T378C	p.A126A	GGGAGCTAGAGTC	.	45	4	40	0	.	93	C	119916935	T	C	119916935	2	2	143	1	0	0	0	0	0	0	0	1	2831	1509	53	2		2	CCDC60	12	119916935	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	44224376	119916935	13934960	119	18435											
ATP6V0A2	23545	broad.mit.edu;bcgsc.ca	37	12	124221770	124221770	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP6V0A2	NM_012463	exon9	c.T990C	p.C330C	CTGGTGTCCCGAG	.	69	5	65	0	.	92	C	124221770	T	C	124221770	2	2	143	1	0	0	0	0	0	0	0	1	1169	1673	58	2		2	ATP6V0A2	12	124221770	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	4304835	124221770	9630125	120	18436											
DNAH10	196385	ucsc.edu;bcgsc.ca	37	12	124341692	124341692	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH10	NM_207437	exon36	c.T6174C	p.D2058D	TTCGGATCTGTTT	.	46	5	46	0	.	95	C	124341692	T	C	124341692	2	2	143	1	0	0	0	0	0	0	0	1	4598	1432	50	2		2	DNAH10	12	124341692	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	119922	124341692	9510203	121	18437											
ATP8A2	51761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26411378	26411378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	ATP8A2,NS,carcinoma,+2	ATP8A2	NM_016529	exon29	c.C2832T	p.P944P	GTTTCCCCAGCTC	.	61	13	50	0	.	138	T	26411378	C	T	26411378	2	4	143	1	0	0	0	0	0	0	0	1	1193	610	22	3		3	ATP8A2	13	26411378	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10		26411378	88758500	122	18438											
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	37678905	37678906	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSNK1A1L	NM_145203	exon1	c.489_490insA	p.K163fs	TCTGTACTTTTTG	.	286	43	323	0	.	396	T	37678906	-	T	37678905	7	5	143	1	0	1	1	0	0	0	0	0	3951	564	20	0	528	0	CSNK1A1L	13	37678905	Frame_Shift_Ins	INS	-	TCGA-G3-A25V-01A-11D-A16V-10	11267527	37678905	77490973	123	18439											
GRTP1	79774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113980034	113980034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRTP1	NM_024719	exon7	c.A863G	p.D288G	AACTTATCGCAAA	.	84	9	145	0	.	90	C	113980034	T	C	113980034	3	2	143	1	0	0	0	0	1	0	0	0	6810	1435	50	2	155	2	GRTP1	13	113980034	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	76301129	113980034	1189844	124	18440											
OR4L1	122742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20528668	20528668	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4L1	NM_001004717	exon1	c.C465T	p.H155H	TTTACACTCCATA	.	103	14	53	0	.	72	T	20528668	C	T	20528668	2	4	143	1	0	0	0	0	0	0	0	1	11074	564	20	3		3	OR4L1	14	20528668	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10		20528668	86820872	125	18441											
AP1G2	8906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24032935	24032935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AP1G2	NM_003917	exon12	c.G1222C	p.A408P	CTGCAGCCAGCAG	.	39	4	43	0	.	45	G	24032935	C	G	24032935	3	3	143	1	0	0	0	0	1	0	0	0	733	739	26	4	1179	4	AP1G2	14	24032935	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	3504267	24032935	83316605	126	18442											
RABGGTA	5875	ucsc.edu;bcgsc.ca	37	14	24737766	24737766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_004581	exon9	c.C960A	p.V320V	CCAAATGACGCGA	.	43	4	44	0	.	.	T	24737766	G	T	24737766	2	4	143	1	0	0	0	0	0	0	0	1	12967	1277	45	3		3	RABGGTA	14	24737766	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	704831	24737766	82611774	127	18443											
STRN3	29966	ucsc.edu;bcgsc.ca	37	14	31382855	31382855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STRN3	NM_001083893	exon10	c.A1249G	p.I417V	ACGTTATTGGTTC	.	41	4	44	0	.	226	C	31382855	T	C	31382855	3	2	143	1	0	0	0	0	1	0	0	0	15329	1493	52	2	1180	2	STRN3	14	31382855	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	6645089	31382855	75966685	128	18444											
C14orf182	283551	ucsc.edu;bcgsc.ca	37	14	50459531	50459531	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C14orf182	NM_001012706	exon2	c.A267G	p.R89R	TGCTGCTCTCCTG	.	47	5	29	0	.	90	C	50459531	T	C	50459531	2	2	143	1	0	0	0	0	0	0	0	1	1765	1548	54	2		2	C14orf182	14	50459531	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	19076676	50459531	56890009	129	18445											
YLPM1	56252	broad.mit.edu;bcgsc.ca	37	14	75266169	75266169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	YLPM1	NM_019589	exon5	c.T4169C	p.V1390A	ATTATGTTCCTGA	.	121	8	115	0	.	71	C	75266169	T	C	75266169	3	2	143	1	0	0	0	0	1	0	0	0	17483	1725	60	2	4187	2	YLPM1	14	75266169	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	24806638	75266169	32083371	130	18446											
ACTC1	70	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35083385	35083385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACTC1	NM_005159	exon6	c.T920C	p.M307T	GGGTACATAGTGG	.	79	10	72	0	.	92	G	35083385	A	G	35083385	3	3	143	1	0	0	0	0	1	0	0	0	195	217	8	2	221	2	ACTC1	15	35083385	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		35083385	67448007	131	18447											
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39880779	39880779	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	THBS1	NM_003246	exon10	c.T1524C	p.C508C	CACCTGTGGAGGA	.	43	4	31	0	.	653	C	39880779	T	C	39880779	2	2	143	1	0	0	0	0	0	0	0	1	15850	1702	59	2		2	THBS1	15	39880779	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	4797394	39880779	62650613	132	18448											
PLA2G4D	283748	ucsc.edu;bcgsc.ca	37	15	42364567	42364567	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLA2G4D	NM_178034	exon14	c.A1341G	p.G447G	TCTCTGTCCTGAC	.	25	4	29	0	.	136	C	42364567	T	C	42364567	2	2	143	1	0	0	0	0	0	0	0	1	12004	1654	58	2		2	PLA2G4D	15	42364567	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	2483788	42364567	60166825	133	18449											
TTBK2	146057	ucsc.edu;bcgsc.ca	37	15	43067421	43067421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTBK2	NM_173500	exon13	c.T1910C	p.L637P	AGTTCCAGCCTAT	.	42	6	45	0	.	338	G	43067421	A	G	43067421	3	3	143	1	0	0	0	0	1	0	0	0	16674	188	7	2	1836	2	TTBK2	15	43067421	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	702854	43067421	59463971	134	18450											
SCAPER	49855	ucsc.edu;bcgsc.ca	37	15	77092703	77092703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCAPER	NM_020843	exon6	c.C497T	p.P166L	GATGTTGGTCTGC	.	70	6	37	0	.	137	A	77092703	G	A	77092703	3	1	143	1	0	0	0	0	1	0	0	0	13878	1348	47	3	3847	3	SCAPER	15	77092703	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	34025282	77092703	25438689	135	18451											
FAM169B	283777	ucsc.edu;bcgsc.ca	37	15	98995196	98995196	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_182562	exon5	c.T228C	p.P76P	AAAGACAGGCAGC	.	38	5	50	0	.	.	G	98995196	A	G	98995196	2	3	143	1	0	0	0	0	0	0	0	1	5488	175	7	2		2	FAM169B	15	98995196	Silent	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	21902493	98995196	3536196	136	18452											
ACSM1	116285	ucsc.edu;bcgsc.ca	37	16	20682931	20682931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACSM1	NM_052956	exon4	c.T674C	p.F225S	CTGGTGAAGAAGA	.	41	4	57	0	.	91	G	20682931	A	G	20682931	3	3	143	1	0	0	0	0	1	0	0	0	182	246	9	2	1099	2	ACSM1	16	20682931	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10		20682931	69671822	137	18453											
XPO6	23214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28167768	28167768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	XPO6	NM_015171	exon7	c.A724T	p.S242C	ACTCACTCTCCAC	.	51	9	53	0	.	227	A	28167768	T	A	28167768	3	1	143	1	0	0	0	0	1	0	0	0	17445	1551	54	4	2725	4	XPO6	16	28167768	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	7484837	28167768	62186985	138	18454											
ABCC12	94160	broad.mit.edu;bcgsc.ca	37	16	48149506	48149506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC12	NM_033226	exon13	c.C1809T	p.L603L	CCCAGAGAGGTTG	.	23	4	25	0	.	93	A	48149506	G	A	48149506	2	1	143	1	0	0	0	0	0	0	0	1	52	929	33	3		3	ABCC12	16	48149506	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	19981738	48149506	42205247	139	18455											
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	53340280	53340280	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHD9	NM_025134	exon32	c.6751delT	p.Y2251fs	GGTGGATATATGC	.	97	15	90	0	.	272	-	53340280	T	-	53340280	7	5	143	1	0	1	0	1	0	0	0	0	3332	1406	49	0	6873	0	CHD9	16	53340280	Frame_Shift_Del	DEL	T	TCGA-G3-A25V-01A-11D-A16V-10	5190774	53340280	37014473	140	18456											
TM4SF5	9032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4686278	4686278	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TM4SF5	NM_003963	exon4	c.C525T	p.I175I	TGGGATCCAGCTG	.	73	20	106	0	.	91	T	4686278	C	T	4686278	2	4	143	1	0	0	0	0	0	0	0	1	15968	845	30	3		3	TM4SF5	17	4686278	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10		4686278	76508932	141	18457											
CAMTA2	23125	ucsc.edu;bcgsc.ca	37	17	4883887	4883887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAMTA2	NM_001171167	exon9	c.A799G	p.S267G	TCGTGCTGCTGCA	.	43	4	62	0	.	91	C	4883887	T	C	4883887	3	2	143	1	0	0	0	0	1	0	0	0	2614	1580	55	2	2988	2	CAMTA2	17	4883887	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	197609	4883887	76311323	142	18458											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577531	7577531	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.750delC	p.P250fs	GAGGATGGGCCTC	.	354	91	108	0	.	70225	-	7577531	G	-	7577531	7	5	143	1	0	1	0	1	0	0	0	0	16378	1335	47	0	540	0	TP53	17	7577531	Frame_Shift_Del	DEL	G	TCGA-G3-A25V-01A-11D-A16V-10	2693644	7577531	73617679	143	18459											
ALOXE3	59344	broad.mit.edu;ucsc.edu	37	17	8012628	8012628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALOXE3	NM_001165960	exon12	c.C1822T	p.L608F	TCATGAGGTAGAT	.	32	5	53	0	.	229	A	8012628	G	A	8012628	3	1	143	1	0	0	0	0	1	0	0	0	542	1000	35	3	729	3	ALOXE3	17	8012628	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	435097	8012628	73182582	144	18460											
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11998923	11998923	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	MAP2K4,NS,carcinoma,0	MAP2K4	NM_003010	exon4	c.425delA	p.Q142fs	AAGAACAAAAACA	.	82	13	79	0	.	3134	-	11998923	A	-	11998923	7	5	143	1	0	1	0	1	0	0	0	0	9239	130	5	0	439	0	MAP2K4	17	11998923	Frame_Shift_Del	DEL	A	TCGA-G3-A25V-01A-11D-A16V-10	3986295	11998923	69196287	145	18461											
GAS2L2	246176	ucsc.edu;bcgsc.ca	37	17	34079489	34079489	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAS2L2	NM_139285	exon1	c.C381A	p.I127I	ACCTTGGATGCCC	.	39	4	44	0	.	227	T	34079489	G	T	34079489	2	4	143	1	0	0	0	0	0	0	0	1	6247	1164	41	3		3	GAS2L2	17	34079489	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	22080566	34079489	47115721	146	18462											
RUNDC1	146923	ucsc.edu;bcgsc.ca	37	17	41143616	41143616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RUNDC1	NM_173079	exon5	c.G1725T	p.M575I	CTACATGGCACAC	.	27	4	27	0	.	90	T	41143616	G	T	41143616	3	4	143	1	0	0	0	0	1	0	0	0	13742	1348	47	3	1743	3	RUNDC1	17	41143616	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	7064127	41143616	40051594	147	18463											
ABCC3	8714	ucsc.edu;bcgsc.ca	37	17	48761110	48761110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC3	NM_003786	exon27	c.G3947T	p.G1316V	ACGGTGGCGAGAA	.	19	4	23	0	.	93	T	48761110	G	T	48761110	3	4	143	1	0	0	0	0	1	0	0	0	54	1203	42	3	4137	3	ABCC3	17	48761110	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	7617494	48761110	32434100	148	18464											
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6958590	6958590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LAMA1	NM_005559	exon55	c.C7850T	p.T2617M	TTTATCGTCCTGC	.	98	11	116	0	.	149	A	6958590	G	A	6958590	3	1	143	1	0	0	0	0	1	0	0	0	8605	1145	40	1	1413	1	LAMA1	18	6958590	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10		6958590	71118658	149	18465											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28648117	28648117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DSC2	NM_024422	exon16	c.A2570G	p.Y857C	TAGTTATATGTCA	.	133	30	93	0	.	517	C	28648117	T	C	28648117	3	2	143	1	0	0	0	0	1	0	0	0	4766	1406	49	2	139	2	DSC2	18	28648117	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	21689527	28648117	49429131	150	18466											
GIPC3	126326	ucsc.edu;bcgsc.ca	37	19	3586569	3586569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GIPC3	NM_133261	exon2	c.T302C	p.F101S	AGGACTTCATCTT	.	33	4	56	0	.	135	C	3586569	T	C	3586569	3	2	143	1	0	0	0	0	1	0	0	0	6394	1783	62	2	308	2	GIPC3	19	3586569	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10		3586569	55542414	151	18467											
INSR	3643	ucsc.edu;bcgsc.ca	37	19	7117231	7117231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INSR	NM_000208	exon22	c.C3985A	p.L1329M	GGTCCAGGGGCAC	.	40	4	49	1	.	1381	T	7117231	G	T	7117231	3	4	143	1	0	0	0	0	1	0	0	0	7773	991	35	3	167	3	INSR	19	7117231	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	3530662	7117231	52011752	152	18468											
TMEM205	374882	ucsc.edu;bcgsc.ca	37	19	11453629	11453629	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM205	NM_033408	exon4	c.A432G	p.R144R	CTTCTCTCGCAGC	.	61	6	120	0	.	22	C	11453629	T	C	11453629	2	2	143	1	0	0	0	0	0	0	0	1	16127	1538	54	2		2	TMEM205	19	11453629	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	4336398	11453629	47675354	153	18469											
PGLS	25796	ucsc.edu;bcgsc.ca	37	19	17627038	17627038	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGLS	NM_012088	exon2	c.C345A	p.P115P	TAACCCCGAGCTG	.	61	5	73	0	.	90	A	17627038	C	A	17627038	2	1	143	1	0	0	0	0	0	0	0	1	11792	639	23	1		1	PGLS	19	17627038	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	6173409	17627038	41501945	154	18470											
CYP2A13	1553	ucsc.edu;bcgsc.ca	37	19	41595994	41595994	+	Missense_Mutation	SNP	G	G	A	rs138225940	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYP2A13	NM_000766	exon3	c.G386A	p.R129H	TCCGGCGCTTCTC	.	49	4	54	0	G|0.999;C|0.001	93	A	41595994	G	A	41595994	3	1	143	1	0	0	0	0	1	0	0	0	4161	1087	38	1	396	1	CYP2A13	19	41595994	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	23968956	41595994	17532989	155	18471											
AXL	558	ucsc.edu;bcgsc.ca	37	19	41762488	41762488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AXL	NM_021913	exon18	c.A2168G	p.D723G	TAGCTGACCGTGT	.	39	4	54	0	.	1403	G	41762488	A	G	41762488	3	3	143	1	0	0	0	0	1	0	0	0	1238	275	10	2	2238	2	AXL	19	41762488	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	166494	41762488	17366495	156	18472											
NUCB1	4924	ucsc.edu;bcgsc.ca	37	19	49425171	49425171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUCB1	NM_006184	exon12	c.A1261G	p.K421E	CAGCTCAAGTTCC	.	56	6	94	0	.	90	G	49425171	A	G	49425171	3	3	143	1	0	0	0	0	1	0	0	0	10718	131	5	2	1303	2	NUCB1	19	49425171	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	7662683	49425171	9703812	157	18473											
MYBPC2	4606	ucsc.edu;bcgsc.ca	37	19	50965201	50965201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYBPC2	NM_004533	exon26	c.A3136G	p.M1046V	TTCCGGATGGCTC	.	45	4	63	0	.	67	G	50965201	A	G	50965201	3	3	143	1	0	0	0	0	1	0	0	0	10012	333	12	2	3238	2	MYBPC2	19	50965201	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	1540030	50965201	8163782	158	18474											
NLRP5	126206	ucsc.edu;bcgsc.ca	37	19	56515221	56515221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NLRP5	NM_153447	exon2	c.T202C	p.C68R	CAATGGTGTCTCT	.	40	5	41	0	.	162	C	56515221	T	C	56515221	3	2	143	1	0	0	0	0	1	0	0	0	10480	1696	59	2	208	2	NLRP5	19	56515221	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	5550020	56515221	2613762	159	18475											
ZNF543	125919	ucsc.edu;bcgsc.ca	37	19	57840605	57840605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF543	NM_213598	exon4	c.A1775G	p.N592S	TTTTGAATATCAC	.	30	4	36	0	.	92	G	57840605	A	G	57840605	3	3	143	1	0	0	0	0	1	0	0	0	17973	101	4	2	1789	2	ZNF543	19	57840605	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	1325384	57840605	1288378	160	18476											
ZNF549	256051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58048901	58048901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF549	NM_001199295	exon4	c.C529A	p.L177M	ATTCCTCTGTCAG	.	58	6	47	0	.	91	A	58048901	C	A	58048901	3	1	143	1	0	0	0	0	1	0	0	0	17978	912	32	3	500	3	ZNF549	19	58048901	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	208296	58048901	1080082	161	18477											
ZNF133	7692	ucsc.edu;bcgsc.ca	37	20	18296815	18296815	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF133	NM_001083330	exon4	c.T1317C	p.C439C	TGTTTGTGGGGTG	.	34	4	54	0	.	92	C	18296815	T	C	18296815	2	2	143	1	0	0	0	0	0	0	0	1	17720	1702	59	2		2	ZNF133	20	18296815	Silent	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10		18296815	44728705	162	18478											
PHF20	51230	broad.mit.edu;bcgsc.ca	37	20	34389481	34389481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHF20	NM_016436	exon2	c.T37C	p.F13L	ATCAGCTTTGAAG	.	68	6	40	1	.	515	C	34389481	T	C	34389481	3	2	143	1	0	0	0	0	1	0	0	0	11831	1609	56	2	39	2	PHF20	20	34389481	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	16092666	34389481	28636039	163	18479											
PCIF1	63935	ucsc.edu;bcgsc.ca	37	20	44574480	44574480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PCIF1	NM_022104	exon12	c.G1299T	p.K433N	GTATAAGGGAGAG	.	37	4	41	0	.	91	T	44574480	G	T	44574480	3	4	143	1	0	0	0	0	1	0	0	0	11580	991	35	3	1337	3	PCIF1	20	44574480	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	10184999	44574480	18451040	164	18480											
GNAS	2778	ucsc.edu;bcgsc.ca	37	20	57415853	57415853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GNAS	NM_016592	exon1	c.C692A	p.P231Q	CGTCCCCGGAGTC	.	22	4	26	0	.	4767	A	57415853	C	A	57415853	3	1	143	1	0	0	0	0	1	0	0	0	6510	652	23	1	694	1	GNAS	20	57415853	Missense_Mutation	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	12841373	57415853	5609667	165	18481											
NTSR1	4923	ucsc.edu;bcgsc.ca	37	20	61340805	61340805	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NTSR1	NM_002531	exon1	c.G246T	p.T82T	CAACACGGTGACG	.	34	4	54	0	.	524	T	61340805	G	T	61340805	2	4	143	1	0	0	0	0	0	0	0	1	10710	1103	39	1		1	NTSR1	20	61340805	Silent	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	3924952	61340805	1684715	166	18482											
KCNJ15	3772	broad.mit.edu;bcgsc.ca	37	21	39671899	39671899	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNJ15	NM_002243	exon4	c.T716A	p.I239N	TCCACGTGGACTC	.	16	3	18	0	.	157	A	39671899	T	A	39671899	3	1	143	1	0	0	0	0	1	0	0	0	8049	1696	59	4	718	4	KCNJ15	21	39671899	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10		39671899	8457996	167	18483											
HIC2	23119	ucsc.edu;bcgsc.ca	37	22	21800865	21800865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIC2	NM_015094	exon3	c.T1681C	p.F561L	AAGCCCTTCGCCT	.	35	4	54	0	.	703	C	21800865	T	C	21800865	3	2	143	1	0	0	0	0	1	0	0	0	7102	1609	56	2	1687	2	HIC2	22	21800865	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10		21800865	29503701	168	18484											
NPTXR	23467	ucsc.edu;bcgsc.ca	37	22	39224465	39224465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NPTXR	NM_014293	exon2	c.C677T	p.A226V	GGCACAGCAGAGA	.	23	4	24	0	.	92	A	39224465	G	A	39224465	3	1	143	1	0	0	0	0	1	0	0	0	10604	971	34	3	841	3	NPTXR	22	39224465	Missense_Mutation	SNP	G	TCGA-G3-A25V-01A-11D-A16V-10	17423600	39224465	12080101	169	18485											
SCML1	6322	ucsc.edu;bcgsc.ca	37	X	17769993	17769993	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCML1	NM_001037540	exon7	c.C762T	p.H254H	TAAGCACCCTTCA	.	49	4	44	0	.	290	T	17769993	C	T	17769993	2	4	143	1	0	0	0	0	0	0	0	1	13909	506	18	3		3	SCML1	23	17769993	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10		17769993	137500567	170	18486											
GAGE10	643832	ucsc.edu;bcgsc.ca	37	X	49173765	49173765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAGE10	NM_001098413	exon4	c.A326G	p.E109G	CTGAAGAAGGTAG	.	55	5	74	0	.	22	G	49173765	A	G	49173765	3	3	143	1	0	0	0	0	1	0	0	0	6187	246	9	2	336	2	GAGE10	23	49173765	Missense_Mutation	SNP	A	TCGA-G3-A25V-01A-11D-A16V-10	31403772	49173765	106096795	171	18487											
ASB12	142689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63445128	63445128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASB12	NM_130388	exon2	c.A403G	p.S135G	AGATGCTACCACC	.	48	15	47	0	.	228	C	63445128	T	C	63445128	3	2	143	1	0	0	0	0	1	0	0	0	1016	1522	53	2	561	2	ASB12	23	63445128	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	14271363	63445128	91825432	172	18488											
OTUD6A	139562	ucsc.edu;bcgsc.ca	37	X	69282482	69282482	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OTUD6A	NM_207320	exon1	c.C108A	p.T36T	CAAGACCGACAAG	.	52	5	61	0	.	541	A	69282482	C	A	69282482	2	1	143	1	0	0	0	0	0	0	0	1	11316	639	23	1		1	OTUD6A	23	69282482	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10	5837354	69282482	85988078	173	18489											
ALG13	79868	ucsc.edu;bcgsc.ca	37	X	110951316	110951316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALG13	NM_001099922	exon4	c.T445C	p.S149P	CAAGATTCTGCAG	.	40	4	30	0	.	130	C	110951316	T	C	110951316	3	2	143	1	0	0	0	0	1	0	0	0	515	1783	62	2	601	2	ALG13	23	110951316	Missense_Mutation	SNP	T	TCGA-G3-A25V-01A-11D-A16V-10	41668834	110951316	44319244	174	18490											
KDM5D	8284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	21897301	21897301	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5D	NM_001146705	exon8	c.G870A	p.L290L	TAGGCTCAAGTGC	.	74	21	39	0	.	560	T	21897301	C	T	21897301	2	4	143	1	0	0	0	0	0	0	0	1	8136	825	29	3		3	KDM5D	24	21897301	Silent	SNP	C	TCGA-G3-A25V-01A-11D-A16V-10		21897301	37476265	175	18491											
PRDM16	63976	ucsc.edu;bcgsc.ca	37	1	3350306	3350306	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRDM16	NM_022114	exon17	c.G3762A	p.L1254L	TTCTCTGGACGCT	.	42	4	29	0	.	660	A	3350306	G	A	3350306	2	1	144	1	0	0	0	0	0	0	0	1	12457	1335	47	3		3	PRDM16	1	3350306	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		3350306	245900315	1	18492											
SRM	6723	ucsc.edu;bcgsc.ca	37	1	11118901	11118901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SRM	NM_003132	exon3	c.A337G	p.K113E	GGTGCTTCACCAC	.	37	4	36	0	.	90	C	11118901	T	C	11118901	3	2	144	1	0	0	0	0	1	0	0	0	15150	1792	62	2	595	2	SRM	1	11118901	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	7768595	11118901	238131720	2	18493											
ARHGEF10L	55160	ucsc.edu;bcgsc.ca	37	1	17981129	17981129	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ARHGEF10L	NM_018125	exon23	c.2395-2A>G	.	CTCTGCAGCTTGG	.	45	5	52	0	.	292	G	17981129	A	G	17981129	5	3	144	1	0	0	0	0	0	0	1	0	895	202	7	2	2479	2	ARHGEF10L	1	17981129	Splice_Site	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	6862228	17981129	231269492	3	18494											
COL16A1	1307	ucsc.edu;bcgsc.ca	37	1	32120418	32120418	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	COL16A1	NM_001856	exon68	c.A4332G	p.R1444R	CTCTTGTCTGATG	.	45	4	45	0	.	98	C	32120418	T	C	32120418	2	2	144	1	0	0	0	0	0	0	0	1	3673	1664	58	2		2	COL16A1	1	32120418	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	14139289	32120418	217130203	4	18495											
SLC6A9	6536	ucsc.edu;bcgsc.ca	37	1	44466893	44466893	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SLC6A9	NM_201649	exon10	c.T1497C	p.Y499Y	GGTCACATAGGTC	.	44	4	52	1	.	90	G	44466893	A	G	44466893	2	3	144	1	0	0	0	0	0	0	0	1	14691	224	8	2		2	SLC6A9	1	44466893	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	12346475	44466893	204783728	5	18496											
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70501869	70501869	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRRC7	NM_020794	exon17	c.C1947T	p.T649T	TGAGACCCCTCTG	.	75	9	71	0	.	163	T	70501869	C	T	70501869	2	4	144	1	0	0	0	0	0	0	0	1	9020	610	22	3		3	LRRC7	1	70501869	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	26034976	70501869	178748752	6	18497											
KCNA10	3744	broad.mit.edu;bcgsc.ca	37	1	111060014	111060014	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KCNA10	NM_005549	exon1	c.C1396A	p.R466R	TCTCCCGGTGGTA	.	187	8	157	1	.	156	T	111060014	G	T	111060014	2	4	144	1	0	0	0	0	0	0	0	1	8002	1115	39	1		1	KCNA10	1	111060014	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	40558145	111060014	138190607	7	18498											
HFE2	148738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145414811	145414811	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HFE2	NM_213653	exon2	c.C30T	p.P10P	TAGTCCCAGGTCC	.	80	22	60	0	.	91	T	145414811	C	T	145414811	2	4	144	1	0	0	0	0	0	0	0	1	7082	581	21	3		3	HFE2	1	145414811	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	34354797	145414811	103835810	8	18499											
NPR1	4881	ucsc.edu;bcgsc.ca	37	1	153660156	153660156	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NPR1	NM_000906	exon14	c.T2139C	p.P713P	ACCCCCTGTGCGG	.	60	4	29	0	.	393	C	153660156	T	C	153660156	2	2	144	1	0	0	0	0	0	0	0	1	10594	1567	55	2		2	NPR1	1	153660156	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	8245345	153660156	95590465	9	18500											
CKS1B	1163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	154947279	154947279	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CKS1B	NM_001826	exon1	c.C58T	p.R20X	GAGTATCGGTTAG	.	185	53	133	0	.	251	T	154947279	C	T	154947279	4	4	144	1	0	0	0	0	0	1	0	0	3452	898	31	1	60	1	CKS1B	1	154947279	Nonsense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	1287123	154947279	94303342	10	18501											
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158984635	158984635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IFI16	NM_001206567	exon2	c.G165C	p.K55N	AGAAAAGTTCCGA	.	270	63	258	0	.	91	C	158984635	G	C	158984635	3	2	144	1	0	0	0	0	1	0	0	0	7511	1020	36	4	167	4	IFI16	1	158984635	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	4037356	158984635	90265986	11	18502											
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178420786	178420786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RASAL2	NM_170692	exon10	c.G1708A	p.D570N	CTGATAGACCATC	.	54	19	66	0	.	155	A	178420786	G	A	178420786	3	1	144	1	0	0	0	0	1	0	0	0	13064	942	33	3	1763	3	RASAL2	1	178420786	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	19436151	178420786	70829835	12	18503											
HMCN1	83872	broad.mit.edu;bcgsc.ca	37	1	186088390	186088390	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HMCN1	NM_031935	exon78	c.G11916T	p.A3972A	GAATGCGGCTGGC	.	100	8	72	0	.	113	T	186088390	G	T	186088390	2	4	144	1	0	0	0	0	0	0	0	1	7220	1103	39	1		1	HMCN1	1	186088390	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	7667604	186088390	63162231	13	18504											
LHX9	56956	ucsc.edu;bcgsc.ca	37	1	197890497	197890497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LHX9	NM_020204	exon3	c.G441T	p.M147I	GGTCATGCGCGCC	.	48	5	37	0	.	91	T	197890497	G	T	197890497	3	4	144	1	0	0	0	0	1	0	0	0	8777	1319	46	3	483	3	LHX9	1	197890497	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	11802107	197890497	51360124	14	18505											
IPO9	55705	ucsc.edu;bcgsc.ca	37	1	201832722	201832722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IPO9	NM_018085	exon14	c.A1615G	p.R539G	GCAGTGAGAGCCA	.	42	5	50	0	.	228	G	201832722	A	G	201832722	3	3	144	1	0	0	0	0	1	0	0	0	7799	296	11	2	1669	2	IPO9	1	201832722	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	3942225	201832722	47417899	15	18506											
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202710671	202710671	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KDM5B	NM_006618	exon19	c.G2769A	p.V923V	TTGCTGCACCTCT	.	46	10	44	0	.	273	T	202710671	C	T	202710671	2	4	144	1	0	0	0	0	0	0	0	1	8134	697	25	3		3	KDM5B	1	202710671	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	877949	202710671	46539950	16	18507											
GUK1	2987	ucsc.edu;bcgsc.ca	37	1	228336111	228336111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GUK1	NM_001159390	exon7	c.A578G	p.D193G	TTAACGACAGCCT	.	36	4	28	0	.	115	G	228336111	A	G	228336111	3	3	144	1	0	0	0	0	1	0	0	0	6900	275	10	2	604	2	GUK1	1	228336111	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	25625440	228336111	20914510	17	18508											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	21235442	21235442	+	Nonsense_Mutation	SNP	G	G	T	rs200708197	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	APOB	NM_000384	exon26	c.C4298A	p.S1433X	ATATTCGAATCTA	.	73	20	73	0	G|0.999;A|0.001	175	T	21235442	G	T	21235442	4	4	144	1	0	0	0	0	0	1	0	0	785	1059	37	1	9409	1	APOB	2	21235442	Nonsense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		21235442	221963931	18	18509											
PLEK	5341	ucsc.edu;bcgsc.ca	37	2	68607905	68607905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PLEK	NM_002664	exon3	c.A249G	p.A83A	CCAGGCAGCCTTC	.	54	5	39	0	.	91	G	68607905	A	G	68607905	2	3	144	1	0	0	0	0	0	0	0	1	12053	175	7	2		2	PLEK	2	68607905	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	47372463	68607905	174591468	19	18510											
MPHOSPH10	10199	ucsc.edu;bcgsc.ca	37	2	71366928	71366928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MPHOSPH10	NM_005791	exon6	c.C1244A	p.P415H	TAGCACCTGTGAT	.	43	4	36	0	.	93	A	71366928	C	A	71366928	3	1	144	1	0	0	0	0	1	0	0	0	9725	681	24	3	1266	3	MPHOSPH10	2	71366928	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	2759023	71366928	171832445	20	18511											
REV1	51455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	100019252	100019253	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	REV1	NM_016316	exon21	c.3395_3396del	p.1132_1132del	AGAAGCAGAGAGT	.	64	21	32	0	.	92	-	100019253	AG	-	100019252	7	5	144	1	0	1	0	1	0	0	0	0	13239	175	7	0	371	0	REV1	2	100019252	Frame_Shift_Del	DEL	AG	TCGA-G3-A25W-01A-11D-A16V-10	28652324	100019252	143180121	21	18512											
MARCO	8685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	119739211	119739211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MARCO	NM_006770	exon10	c.C880T	p.P294S	GGTTTTCCTGGAG	.	89	27	84	0	.	95	T	119739211	C	T	119739211	3	4	144	1	0	0	0	0	1	0	0	0	9311	855	30	3	918	3	MARCO	2	119739211	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	19719959	119739211	123460162	22	18513											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137988754	137988754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	THSD7B	.	.	.	.	AAAAACTCAGATG	.	92	16	84	0	.	75	C	137988754	T	C	137988754	3	2	144	1	0	0	0	0	1	0	0	0	15877	1551	54	2	1797	2	THSD7B	2	137988754	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	18249543	137988754	105210619	23	18514											
MYO3B	140469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171358299	171358299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYO3B	NM_138995	exon28	c.G3294T	p.W1098C	AGCCTGGAGAGGA	.	38	14	48	0	.	530	T	171358299	G	T	171358299	3	4	144	1	0	0	0	0	1	0	0	0	10077	1183	41	3	3404	3	MYO3B	2	171358299	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	33369545	171358299	71841074	24	18515											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179407524	179407524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TTN	NM_001267550	exon348	c.G97057A	p.V32353I	CTGTGACACGCTC	.	122	20	104	0	.	636	T	179407524	C	T	179407524	3	4	144	1	0	0	0	0	1	0	0	0	16732	478	17	3	10982	3	TTN	2	179407524	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	8049225	179407524	63791849	25	18516											
DOCK10	55619	ucsc.edu;bcgsc.ca	37	2	225634958	225634958	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DOCK10	NM_014689	exon55	c.C6414A	p.L2138L	TTCGCTGAGCATG	.	46	4	34	0	.	92	T	225634958	G	T	225634958	2	4	144	1	0	0	0	0	0	0	0	1	4685	1277	45	3		3	DOCK10	2	225634958	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	46227434	225634958	17564415	26	18517											
MLPH	79083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238434305	238434305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MLPH	NM_001042467	exon7	c.A737T	p.E246V	TGGAGGAGGCTGA	.	52	14	40	0	.	91	T	238434305	A	T	238434305	3	4	144	1	0	0	0	0	1	0	0	0	9633	304	11	4	759	4	MLPH	2	238434305	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	12799347	238434305	4765068	27	18518											
MRPS25	64432	ucsc.edu;bcgsc.ca	37	3	15094002	15094002	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MRPS25	NM_022497	exon4	c.C468A	p.P156P	CTCCTTGGGTAAT	.	48	4	73	0	.	90	T	15094002	G	T	15094002	2	4	144	1	0	0	0	0	0	0	0	1	9836	1335	47	3		3	MRPS25	3	15094002	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		15094002	182928428	28	18519											
UCN2	90226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	48600437	48600437	+	Nonsense_Mutation	SNP	G	G	A	rs149022309		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UCN2	NM_033199	exon2	c.C121T	p.R41X	CAGGTCGGGGAGT	.	71	17	74	0	G|1.000;A|0.000	68	A	48600437	G	A	48600437	4	1	144	1	0	0	0	0	0	1	0	0	16925	1124	39	1	221	1	UCN2	3	48600437	Nonsense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	33506435	48600437	149421993	29	18520											
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49738928	49738928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RNF123	NM_022064	exon16	c.G1282T	p.D428Y	AGCTTCGACGTGC	.	37	12	32	0	.	584	T	49738928	G	T	49738928	3	4	144	1	0	0	0	0	1	0	0	0	13433	1058	37	1	1340	1	RNF123	3	49738928	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	1138491	49738928	148283502	30	18521											
TRAIP	10293	broad.mit.edu;bcgsc.ca	37	3	49869470	49869470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TRAIP	NM_005879	exon11	c.C916T	p.R306C	GCCGGCGGAGCTT	.	40	9	33	0	.	849	A	49869470	G	A	49869470	3	1	144	1	0	0	0	0	1	0	0	0	16445	1116	39	1	513	1	TRAIP	3	49869470	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	130542	49869470	148152960	31	18522											
SEMA3F	6405	ucsc.edu;bcgsc.ca	37	3	50223132	50223132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEMA3F	NM_004186	exon15	c.T1579C	p.S527P	ATCTCTTCTAAGA	.	45	4	45	0	.	279	C	50223132	T	C	50223132	3	2	144	1	0	0	0	0	1	0	0	0	14029	1783	62	2	1633	2	SEMA3F	3	50223132	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	353662	50223132	147799298	32	18523											
ACTR8	93973	ucsc.edu;bcgsc.ca	37	3	53905467	53905467	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ACTR8	NM_022899	exon11	c.G1359A	p.G453G	AAGATCCCCTTCA	.	42	4	38	1	.	91	T	53905467	C	T	53905467	2	4	144	1	0	0	0	0	0	0	0	1	217	610	22	3		3	ACTR8	3	53905467	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	3682335	53905467	144116963	33	18524											
IL17RD	54756	ucsc.edu;bcgsc.ca	37	3	57148813	57148813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IL17RD	NM_017563	exon3	c.C217A	p.H73N	TCACATGCTTCCC	.	31	5	31	0	.	500	T	57148813	G	T	57148813	3	4	144	1	0	0	0	0	1	0	0	0	7642	1319	46	3	2046	3	IL17RD	3	57148813	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	3243346	57148813	140873617	34	18525											
HESX1	8820	broad.mit.edu;ucsc.edu	37	3	57233897	57233897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HESX1	NM_003865	exon1	c.C50A	p.S17X	CAAGTTGAGGGTT	.	71	9	71	0	.	227	T	57233897	G	T	57233897	4	4	144	1	0	0	0	0	0	1	0	0	7072	1294	45	3	523	3	HESX1	3	57233897	Nonsense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	85084	57233897	140788533	35	18526											
CCDC80	151887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112358316	112358316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CCDC80	NM_199511	exon2	c.C437A	p.A146E	TTCCCTGCAAAGC	.	41	6	35	0	.	92	T	112358316	G	T	112358316	3	4	144	1	0	0	0	0	1	0	0	0	2854	1319	46	3	2443	3	CCDC80	3	112358316	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	55124419	112358316	85664114	36	18527											
ARHGAP31	57514	ucsc.edu;bcgsc.ca	37	3	119133643	119133643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ARHGAP31	NM_020754	exon12	c.A2867G	p.D956G	CTCTAGATAGCAA	.	25	4	22	0	.	92	G	119133643	A	G	119133643	3	3	144	1	0	0	0	0	1	0	0	0	880	333	12	2	2913	2	ARHGAP31	3	119133643	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	6775327	119133643	78888787	37	18528											
ADCY5	111	ucsc.edu;bcgsc.ca	37	3	123018993	123018993	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ADCY5	NM_183357	exon15	c.C2874A	p.A958A	CAGGTCGGCGTTG	.	42	4	34	0	.	94	T	123018993	G	T	123018993	2	4	144	1	0	0	0	0	0	0	0	1	297	1103	39	1		1	ADCY5	3	123018993	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	3885350	123018993	75003437	38	18529											
KALRN	8997	ucsc.edu;bcgsc.ca	37	3	124418823	124418823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KALRN	NM_001024660	exon56	c.C7939A	p.P2647T	AGTAACCCCTGGG	.	45	6	44	0	.	738	A	124418823	C	A	124418823	3	1	144	1	0	0	0	0	1	0	0	0	7975	623	22	3	8317	3	KALRN	3	124418823	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	1399830	124418823	73603607	39	18530											
PLXNA1	5361	ucsc.edu;bcgsc.ca	37	3	126746843	126746843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PLXNA1	NM_032242	exon23	c.G4423A	p.G1475S	GAGAAGGGCCCCA	.	37	4	52	0	.	93	A	126746843	G	A	126746843	3	1	144	1	0	0	0	0	1	0	0	0	12119	1232	43	3	4513	3	PLXNA1	3	126746843	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	2328020	126746843	71275587	40	18531											
NPHP3	27031	ucsc.edu;bcgsc.ca	37	3	132418879	132418879	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NPHP3	NM_153240	exon12	c.T1770C	p.S590S	CAGAGCAGAGACT	.	41	4	32	0	.	91	G	132418879	A	G	132418879	2	3	144	1	0	0	0	0	0	0	0	1	10580	175	7	2		2	NPHP3	3	132418879	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	5672036	132418879	65603551	41	18532											
CLCN2	1181	ucsc.edu;bcgsc.ca	37	3	184069898	184069898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CLCN2	NM_004366	exon22	c.A2318G	p.E773G	TCCCACTCCAGAA	.	31	4	25	0	.	90	C	184069898	T	C	184069898	3	2	144	1	0	0	0	0	1	0	0	0	3463	1551	54	2	390	2	CLCN2	3	184069898	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	51651019	184069898	13952532	42	18533											
PIGZ	80235	ucsc.edu;bcgsc.ca	37	3	196678748	196678748	+	Missense_Mutation	SNP	G	G	T	rs201038840	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PIGZ	NM_025163	exon2	c.C155A	p.P52Q	GTCTGCGGAAGGA	.	44	4	45	0	G|0.999;A|0.000	93	T	196678748	G	T	196678748	3	4	144	1	0	0	0	0	1	0	0	0	11905	1116	39	1	1592	1	PIGZ	3	196678748	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	12608850	196678748	1343682	43	18534											
HAUS3	79441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2242302	2242302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HAUS3	NM_024511	exon2	c.A372C	p.Q124H	CATCAATTGACAT	.	124	26	97	1	.	138	G	2242302	T	G	2242302	3	3	144	1	0	0	0	0	1	0	0	0	6967	1490	52	5	1455	5	HAUS3	4	2242302	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10		2242302	188911974	44	18535											
HTRA3	94031	ucsc.edu;bcgsc.ca	37	4	8293156	8293156	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HTRA3	NM_053044	exon4	c.G768T	p.V256V	GTTTGTGGTGGCC	.	51	6	76	0	.	91	T	8293156	G	T	8293156	2	4	144	1	0	0	0	0	0	0	0	1	7455	1335	47	3		3	HTRA3	4	8293156	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	6050854	8293156	182861120	45	18536											
ACOX3	8310	ucsc.edu;bcgsc.ca	37	4	8372711	8372711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ACOX3	NM_003501	exon17	c.A1907G	p.D636G	ACTGCATCGTCTT	.	33	4	25	0	.	90	C	8372711	T	C	8372711	3	2	144	1	0	0	0	0	1	0	0	0	160	1435	50	2	203	2	ACOX3	4	8372711	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	79555	8372711	182781565	46	18537											
USP46	64854	ucsc.edu;bcgsc.ca	37	4	53494294	53494294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	USP46	NM_022832	exon3	c.G154A	p.A52T	ACAATGCCTGAAG	.	43	4	56	0	.	637	T	53494294	C	T	53494294	3	4	144	1	0	0	0	0	1	0	0	0	17074	739	26	3	974	3	USP46	4	53494294	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	45121583	53494294	137659982	47	18538											
COPS4	51138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83971134	83971134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	COPS4	NM_016129	exon4	c.A407G	p.Q136R	CAGGACAAAAGTA	.	36	8	37	0	.	226	G	83971134	A	G	83971134	3	3	144	1	0	0	0	0	1	0	0	0	3735	130	5	2	421	2	COPS4	4	83971134	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	30476840	83971134	107183142	48	18539											
PCDH10	57575	ucsc.edu;bcgsc.ca	37	4	134071608	134071608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PCDH10	NM_032961	exon1	c.C313A	p.L105M	CTGGAGCTGTTCC	.	36	4	31	0	.	92	A	134071608	C	A	134071608	3	1	144	1	0	0	0	0	1	0	0	0	11507	796	28	3	315	3	PCDH10	4	134071608	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	50100474	134071608	57082668	49	18540											
C4orf51	646603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146650320	146650320	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001080531	exon4	c.367-1G>T	.	TTTATAGGCACAT	.	201	21	184	1	.	.	T	146650320	G	T	146650320	5	4	144	1	0	0	0	0	0	0	1	0	2277	1014	35	3	380	3	C4orf51	4	146650320	Splice_Site	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	12578712	146650320	44503956	50	18541	103	2									
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146650321	146650321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001080531	exon4	c.G367T	p.A123S	TTATAGGCACATC	.	199	20	184	0	.	.	T	146650321	G	T	146650321	3	4	144	1	0	0	0	0	1	0	0	0	2277	1217	42	3	381	3	C4orf51	4	146650321	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	1	146650321	44503955	51	18542	103	2									
NR3C2	4306	ucsc.edu;bcgsc.ca	37	4	149115938	149115938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NR3C2	NM_001166104	exon4	c.G1973T	p.C658F	AGTCTGCAAGCAG	.	32	5	37	0	.	154	A	149115938	C	A	149115938	3	1	144	1	0	0	0	0	1	0	0	0	10631	710	25	3	1005	3	NR3C2	4	149115938	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	2465617	149115938	42038338	52	18543											
FNIP2	57600	ucsc.edu;bcgsc.ca	37	4	159791478	159791478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FNIP2	NM_020840	exon14	c.A2806G	p.S936G	AGCATCAGCACCC	.	38	4	35	0	.	68	G	159791478	A	G	159791478	3	3	144	1	0	0	0	0	1	0	0	0	5976	188	7	2	2860	2	FNIP2	4	159791478	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	10675540	159791478	31362798	53	18544											
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3600204	3600204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IRX1	NM_024337	exon2	c.C1142A	p.A381E	TCCTCGCACAGGG	.	98	27	74	0	.	228	A	3600204	C	A	3600204	3	1	144	1	0	0	0	0	1	0	0	0	7843	710	25	3	1148	3	IRX1	5	3600204	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		3600204	177315056	54	18545											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37227754	37227754	+	Silent	SNP	T	T	C	rs186540080	by1000genomes	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	C5orf42	NM_023073	exon10	c.A1287G	p.L429L	TGGAGATAGGCTA	.	136	23	110	0	T|0.999;C|0.000	94	C	37227754	T	C	37227754	2	2	144	1	0	0	0	0	0	0	0	1	2301	1393	49	2		2	C5orf42	5	37227754	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	33627550	37227754	143687506	55	18546											
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	39376177	39376177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DAB2	NM_001343	exon13	c.C2169A	p.S723S	TGGCAGGGAAACT	.	77	34	66	0	.	227	T	39376177	G	T	39376177	2	4	144	1	0	0	0	0	0	0	0	1	4218	1219	43	3		3	DAB2	5	39376177	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	2148423	39376177	141539083	56	18547											
POLK	51426	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74892708	74892708	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	POLK	NM_016218	exon13	c.T2190C	p.S730S	TTCTAGTCTCCCA	.	44	7	36	0	.	229	C	74892708	T	C	74892708	2	2	144	1	0	0	0	0	0	0	0	1	12204	1664	58	2		2	POLK	5	74892708	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	35516531	74892708	106022552	57	18548											
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130841171	130841171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RAPGEF6	NM_001164387	exon10	c.T987A	p.S329R	TGGATGACTGATT	.	114	20	70	0	.	661	T	130841171	A	T	130841171	3	4	144	1	0	0	0	0	1	0	0	0	13048	272	10	4	4380	4	RAPGEF6	5	130841171	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	55948463	130841171	50074089	58	18549											
PCDHGA8	9708	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140772531	140772531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_014004	exon1	c.G151T	p.D51Y	TCCAAGGACCTGG	.	51	8	42	0	.	.	T	140772531	G	T	140772531	3	4	144	1	0	0	0	0	1	0	0	0	11560	1174	41	3	153	3	PCDHGA8	5	140772531	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	9931360	140772531	40142729	59	18550											
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145246178	145246178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GRXCR2	NM_001080516	exon2	c.G450C	p.E150D	AGCCTCCTCTTCC	.	131	30	91	0	.	22	G	145246178	C	G	145246178	3	3	144	1	0	0	0	0	1	0	0	0	6813	680	24	4	304	4	GRXCR2	5	145246178	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	4473647	145246178	35669082	60	18551											
GPRIN1	114787	ucsc.edu;bcgsc.ca	37	5	176025338	176025338	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GPRIN1	NM_052899	exon2	c.T1498C	p.L500L	TCCCCAAGGACCT	.	43	4	37	0	.	92	G	176025338	A	G	176025338	2	3	144	1	0	0	0	0	0	0	0	1	6729	69	3	2		2	GPRIN1	5	176025338	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	30779160	176025338	4889922	61	18552											
KIFC1	3833	ucsc.edu;bcgsc.ca	37	6	33371612	33371612	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KIFC1	NM_002263	exon6	c.T462C	p.R154R	GTGCCGTGAGAGG	.	43	4	42	0	.	90	C	33371612	T	C	33371612	2	2	144	1	0	0	0	0	0	0	0	1	8312	1683	59	2		2	KIFC1	6	33371612	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10		33371612	137743455	62	18553											
ITPR3	3710	ucsc.edu;bcgsc.ca	37	6	33631612	33631612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ITPR3	NM_002224	exon11	c.A1103G	p.E368G	TCTTTGAGCTGGA	.	31	4	45	0	.	1085	G	33631612	A	G	33631612	3	3	144	1	0	0	0	0	1	0	0	0	7922	304	11	2	1145	2	ITPR3	6	33631612	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	260000	33631612	137483455	63	18554											
BTBD9	114781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38256182	38256182	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BTBD9	NM_052893	exon9	c.C1320T	p.V440V	CCGACTGACTCCT	.	59	13	67	0	.	226	A	38256182	G	A	38256182	2	1	144	1	0	0	0	0	0	0	0	1	1548	1277	45	3		3	BTBD9	6	38256182	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	4624570	38256182	132858885	64	18555											
KLC4	89953	ucsc.edu;bcgsc.ca	37	6	43033408	43033408	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KLC4	NM_201523	exon4	c.T594C	p.P198P	CTTTCCTAATGAG	.	41	4	31	0	.	94	C	43033408	T	C	43033408	2	2	144	1	0	0	0	0	0	0	0	1	8336	1509	53	2		2	KLC4	6	43033408	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	4777226	43033408	128081659	65	18556											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65300537	65300537	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EYS	NM_001142800	exon26	c.T5223C	p.D1741D	AGAACTATCACTT	.	125	21	128	0	.	660	G	65300537	A	G	65300537	2	3	144	1	0	0	0	0	0	0	0	1	5332	446	16	2		2	EYS	6	65300537	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	22267129	65300537	105814530	66	18557											
SNX14	57231	ucsc.edu;bcgsc.ca	37	6	86303303	86303303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SNX14	NM_153816	exon1	c.T134C	p.L45P	CTGTTAAGAAGCA	.	45	4	34	0	.	226	G	86303303	A	G	86303303	3	3	144	1	0	0	0	0	1	0	0	0	14885	72	3	2	2822	2	SNX14	6	86303303	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	21002766	86303303	84811764	67	18558											
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111709275	111709275	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	REV3L	NM_002912	exon8	c.G876T	p.V292V	TGCTGGCACAAAC	.	41	4	38	0	.	294	A	111709275	C	A	111709275	2	1	144	1	0	0	0	0	0	0	0	1	13240	697	25	3		3	REV3L	6	111709275	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	25405972	111709275	59405792	68	18559											
HSF2	3298	ucsc.edu;bcgsc.ca	37	6	122737443	122737443	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HSF2	NM_004506	exon5	c.531+2T>C	.	GAAAGGTAAGAAG	.	43	4	38	1	.	90	C	122737443	T	C	122737443	5	2	144	1	0	0	0	0	0	0	1	0	7396	1652	57	2	551	2	HSF2	6	122737443	Splice_Site	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	11028168	122737443	48377624	69	18560											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	144783916	144783916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UTRN	NM_007124	exon22	c.C2980T	p.Q994X	GATGTGCAAGGAA	.	86	22	81	0	.	95	T	144783916	C	T	144783916	4	4	144	1	0	0	0	0	0	1	0	0	17100	711	25	3	3066	3	UTRN	6	144783916	Nonsense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	22046473	144783916	26331151	70	18561											
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152683374	152683374	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SYNE1	NM_033071	exon64	c.C10251A	p.A3417A	CAGGTTGGCTTCC	.	40	4	53	0	.	607	T	152683374	G	T	152683374	2	4	144	1	0	0	0	0	0	0	0	1	15442	1335	47	3		3	SYNE1	6	152683374	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	7899458	152683374	18431693	71	18562											
PDE10A	10846	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165749696	165749696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PDE10A	NM_001130690	exon21	c.G2183T	p.G728V	TAGAACCCAAGCT	.	37	10	21	0	.	519	A	165749696	C	A	165749696	3	1	144	1	0	0	0	0	1	0	0	0	11630	623	22	3	194	3	PDE10A	6	165749696	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	13066322	165749696	5365371	72	18563											
AMZ1	155185	ucsc.edu;bcgsc.ca	37	7	2748347	2748347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	AMZ1	NM_133463	exon4	c.C598A	p.H200N	CCAGGGCACGGTG	.	27	4	22	0	.	90	A	2748347	C	A	2748347	3	1	144	1	0	0	0	0	1	0	0	0	596	710	25	3	608	3	AMZ1	7	2748347	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		2748347	156390316	73	18564											
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5645021	5645021	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FSCN1	NM_003088	exon5	c.C1398T	p.G466G	GGTGGGCGGGCGC	.	50	12	55	0	.	91	T	5645021	C	T	5645021	2	4	144	1	0	0	0	0	0	0	0	1	6067	755	27	1		1	FSCN1	7	5645021	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	2896674	5645021	153493642	74	18565											
DDC	1644	ucsc.edu;bcgsc.ca	37	7	50607706	50607706	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DDC	NM_001082971	exon3	c.C222A	p.P74P	GAAGTAGGGGCTG	.	41	4	45	0	.	92	T	50607706	G	T	50607706	2	4	144	1	0	0	0	0	0	0	0	1	4325	987	35	3		3	DDC	7	50607706	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	44962685	50607706	108530957	75	18566											
SEMA3E	9723	ucsc.edu;bcgsc.ca	37	7	83026017	83026017	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEMA3E	NM_012431	exon12	c.A1395G	p.T465T	GTAAATTGTGATT	.	49	4	36	0	.	93	C	83026017	T	C	83026017	2	2	144	1	0	0	0	0	0	0	0	1	14028	1799	63	2		2	SEMA3E	7	83026017	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	32418311	83026017	76112646	76	18567											
LRCH4	4034	ucsc.edu;bcgsc.ca	37	7	100175837	100175837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRCH4	NM_002319	exon7	c.T893C	p.L298P	GAGTCCAGCCCAC	.	44	4	53	0	.	136	G	100175837	A	G	100175837	3	3	144	1	0	0	0	0	1	0	0	0	8935	188	7	2	1206	2	LRCH4	7	100175837	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	17149820	100175837	58962826	77	18568											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100349904	100349904	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZAN	.	.	.	.	CCCACCATCCCCA	.	288	43	338	1	.	142	G	100349904	A	G	100349904	1	3	144	0	1	0	0	0	0	0	0	0	17510	217	8	2		2	ZAN	7	100349904	RNA	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	174067	100349904	58788759	78	18569											
CAV2	858	ucsc.edu;bcgsc.ca	37	7	116140371	116140371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CAV2	NM_001233	exon2	c.T208C	p.W70R	AAAGTGTGGATCT	.	42	4	61	0	.	90	C	116140371	T	C	116140371	3	2	144	1	0	0	0	0	1	0	0	0	2694	1696	59	2	214	2	CAV2	7	116140371	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	15790467	116140371	42998292	79	18570											
ASZ1	136991	ucsc.edu;bcgsc.ca	37	7	117060227	117060227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ASZ1	NM_130768	exon4	c.G430T	p.V144F	AAGCAACATTTGG	.	18	4	23	0	.	515	A	117060227	C	A	117060227	3	1	144	1	0	0	0	0	1	0	0	0	1069	478	17	3	1037	3	ASZ1	7	117060227	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	919856	117060227	42078436	80	18571											
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	128119304	128119304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	METTL2B	NM_018396	exon3	c.G295A	p.E99K	TTTACCGAATTCC	.	250	41	238	0	.	23	A	128119304	G	A	128119304	3	1	144	1	0	0	0	0	1	0	0	0	9500	1059	37	1	305	1	METTL2B	7	128119304	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	11059077	128119304	31019359	81	18572											
CCDC136	64753	ucsc.edu;bcgsc.ca	37	7	128441554	128441554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CCDC136	NM_022742	exon4	c.G661T	p.G221W	TACTCTGGGTTAC	.	21	4	21	0	.	24	T	128441554	G	T	128441554	3	4	144	1	0	0	0	0	1	0	0	0	2770	1348	47	3	675	3	CCDC136	7	128441554	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	322250	128441554	30697109	82	18573											
EXOC4	60412	ucsc.edu;bcgsc.ca	37	7	133689750	133689750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EXOC4	NM_021807	exon16	c.C2434T	p.P812S	TATGACCCCCTGG	.	41	4	43	0	.	159	T	133689750	C	T	133689750	3	4	144	1	0	0	0	0	1	0	0	0	5306	623	22	3	2505	3	EXOC4	7	133689750	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	5248196	133689750	25448913	83	18574											
AKR1D1	6718	ucsc.edu;bcgsc.ca	37	7	137773383	137773383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	AKR1D1	NM_001190907	exon2	c.G130A	p.A44T	AAGGTTGCTATTG	.	47	4	34	0	.	91	A	137773383	G	A	137773383	3	1	144	1	0	0	0	0	1	0	0	0	473	1319	46	3	136	3	AKR1D1	7	137773383	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	4083633	137773383	21365280	84	18575											
DPP6	1804	ucsc.edu;bcgsc.ca	37	7	154172081	154172081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DPP6	NM_130797	exon3	c.A416G	p.E139G	TCAGTGAAGACTT	.	38	4	37	0	.	652	G	154172081	A	G	154172081	3	3	144	1	0	0	0	0	1	0	0	0	4730	246	9	2	542	2	DPP6	7	154172081	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	16398698	154172081	4966582	85	18576											
PSD3	23362	ucsc.edu;bcgsc.ca	37	8	18432732	18432732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PSD3	NM_015310	exon13	c.C2545A	p.H849N	ATGCGTGGTGCAC	.	60	5	69	0	.	93	T	18432732	G	T	18432732	3	4	144	1	0	0	0	0	1	0	0	0	12648	1348	47	3	614	3	PSD3	8	18432732	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		18432732	127931290	86	18577											
CHMP7	91782	ucsc.edu;bcgsc.ca	37	8	23114093	23114093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CHMP7	NM_152272	exon5	c.C778A	p.Q260K	TTATCCCAGGAAG	.	42	4	39	1	.	90	A	23114093	C	A	23114093	3	1	144	1	0	0	0	0	1	0	0	0	3361	595	21	3	792	3	CHMP7	8	23114093	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	4681361	23114093	123249929	87	18578											
ADAM32	203102	ucsc.edu;bcgsc.ca	37	8	39022715	39022715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ADAM32	NM_145004	exon9	c.T833C	p.I278T	TACTAATGTAAGA	.	34	4	32	0	.	227	C	39022715	T	C	39022715	3	2	144	1	0	0	0	0	1	0	0	0	249	1478	51	2	867	2	ADAM32	8	39022715	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	15908622	39022715	107341307	88	18579											
TRAM1	23471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71499196	71499196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TRAM1	NM_014294	exon8	c.A680G	p.Y227C	ACAAAATAATGTA	.	114	22	102	0	.	227	C	71499196	T	C	71499196	3	2	144	1	0	0	0	0	1	0	0	0	16448	1406	49	2	460	2	TRAM1	8	71499196	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	32476481	71499196	74864826	89	18580											
CPNE3	8895	ucsc.edu;bcgsc.ca	37	8	87563426	87563426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CPNE3	NM_003909	exon14	c.C1084A	p.P362T	GAATTTCCAATGA	.	44	4	31	0	.	117	A	87563426	C	A	87563426	3	1	144	1	0	0	0	0	1	0	0	0	3813	855	30	3	1130	3	CPNE3	8	87563426	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	16064230	87563426	58800596	90	18581											
TPM2	7169	ucsc.edu;bcgsc.ca	37	9	35685294	35685294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TPM2	NM_213674	exon5	c.T535C	p.S179P	CCTCCGAGCGCTC	.	32	4	27	0	.	515	G	35685294	A	G	35685294	3	3	144	1	0	0	0	0	1	0	0	0	16403	304	11	2	506	2	TPM2	9	35685294	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10		35685294	105528137	91	18582											
TMEM2	23670	ucsc.edu;bcgsc.ca	37	9	74360144	74360144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TMEM2	NM_001135820	exon4	c.A824G	p.D275G	GCCGTGTCTTGGT	.	38	4	48	0	.	92	C	74360144	T	C	74360144	3	2	144	1	0	0	0	0	1	0	0	0	16118	1667	58	2	3411	2	TMEM2	9	74360144	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	38674850	74360144	66853287	92	18583											
ALDOB	229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104192169	104192169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ALDOB	NM_000035	exon3	c.C192A	p.F64L	CACAGAGAAGAGG	.	134	33	126	0	.	226	T	104192169	G	T	104192169	3	4	144	1	0	0	0	0	1	0	0	0	508	933	33	3	930	3	ALDOB	9	104192169	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	29832025	104192169	37021262	93	18584											
KIAA0368	23392	ucsc.edu;bcgsc.ca	37	9	114195630	114195630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KIAA0368	NM_001080398	exon9	c.T1265C	p.F422S	TCTATGAATTTCA	.	42	4	29	0	.	68	G	114195630	A	G	114195630	3	3	144	1	0	0	0	0	1	0	0	0	8171	246	9	2	4960	2	KIAA0368	9	114195630	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	10003461	114195630	27017801	94	18585											
FAM129B	64855	ucsc.edu;bcgsc.ca	37	9	130279192	130279192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FAM129B	NM_022833	exon8	c.G917A	p.R306Q	TCAGTTCGGATGA	.	37	4	36	0	.	68	T	130279192	C	T	130279192	3	4	144	1	0	0	0	0	1	0	0	0	5437	884	31	1	1351	1	FAM129B	9	130279192	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	16083562	130279192	10934239	95	18586											
FAM73B	84895	ucsc.edu;bcgsc.ca	37	9	131832221	131832221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FAM73B	NM_032809	exon15	c.G1552T	p.A518S	CAGCTTGCTGAAG	.	48	4	32	0	.	91	T	131832221	G	T	131832221	3	4	144	1	0	0	0	0	1	0	0	0	5618	1319	46	3	1606	3	FAM73B	9	131832221	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	1553029	131832221	9381210	96	18587											
LCN6	158062	ucsc.edu;bcgsc.ca	37	9	139641977	139641977	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LCN6	NM_198946	exon2	c.G129T	p.R43R	CTTTTCCCGGGAG	.	39	4	33	0	.	90	A	139641977	C	A	139641977	2	1	144	1	0	0	0	0	0	0	0	1	8685	610	22	3		3	LCN6	9	139641977	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	7809756	139641977	1571454	97	18588											
SEPHS1	22929	ucsc.edu;bcgsc.ca	37	10	13371747	13371747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEPHS1	NM_001195604	exon6	c.A602G	p.K201R	AGGGGTTTTGTCA	.	40	5	37	0	.	116	C	13371747	T	C	13371747	3	2	144	1	0	0	0	0	1	0	0	0	14054	1841	64	2	592	2	SEPHS1	10	13371747	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10		13371747	122163000	98	18589											
FAM171A1	221061	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15255747	15255747	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FAM171A1	NM_001010924	exon8	c.C1840T	p.L614L	CCTGTAGTCTTTC	.	68	13	78	0	.	138	A	15255747	G	A	15255747	2	1	144	1	0	0	0	0	0	0	0	1	5490	1020	36	3		3	FAM171A1	10	15255747	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	1884000	15255747	120279000	99	18590											
CHAT	1103	ucsc.edu;bcgsc.ca	37	10	50863450	50863450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CHAT	NM_020549	exon13	c.C1795T	p.L599F	CTTCTGCTCCTGA	.	50	4	35	0	.	514	T	50863450	C	T	50863450	3	4	144	1	0	0	0	0	1	0	0	0	3313	797	28	3	1889	3	CHAT	10	50863450	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	35607703	50863450	84671297	100	18591											
EGR2	1959	ucsc.edu;bcgsc.ca	37	10	64575691	64575691	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EGR2	NM_000399	exon1	c.C99T	p.A33A	CGACGTGGCGGCG	.	47	4	32	0	.	92	A	64575691	G	A	64575691	2	1	144	1	0	0	0	0	0	0	0	1	4972	1335	47	3		3	EGR2	10	64575691	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	13712241	64575691	70959056	101	18592											
LRRTM3	347731	ucsc.edu;bcgsc.ca	37	10	68687800	68687800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRRTM3	NM_178011	exon2	c.C1126A	p.P376T	GCTCTCCCAAAGC	.	35	4	46	0	.	93	A	68687800	C	A	68687800	3	1	144	1	0	0	0	0	1	0	0	0	9041	623	22	3	1132	3	LRRTM3	10	68687800	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	4112109	68687800	66846947	102	18593											
HERC4	26091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69726472	69726472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HERC4	NM_022079	exon16	c.A1894G	p.I632V	AGTTGATATAATC	.	100	17	120	0	.	659	C	69726472	T	C	69726472	3	2	144	1	0	0	0	0	1	0	0	0	7060	1406	49	2	1323	2	HERC4	10	69726472	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	1038672	69726472	65808275	103	18594											
PLCE1	51196	ucsc.edu;bcgsc.ca	37	10	95791057	95791057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PLCE1	NM_016341	exon2	c.A254G	p.N85S	ATGAGAACAGTAA	.	45	4	46	0	.	229	G	95791057	A	G	95791057	3	3	144	1	0	0	0	0	1	0	0	0	12034	43	2	2	256	2	PLCE1	10	95791057	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	26064585	95791057	39743690	104	18595											
MTG1	92170	ucsc.edu;bcgsc.ca	37	10	135211954	135211954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MTG1	NM_138384	exon4	c.T298C	p.L100L	CAACACTTAGAAG	.	42	5	40	0	.	91	C	135211954	T	C	135211954	2	2	144	1	0	0	0	0	0	0	0	1	9926	1606	56	2		2	MTG1	10	135211954	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	39420897	135211954	322793	105	18596											
DCHS1	8642	broad.mit.edu;mdanderson.org	37	11	6654287	6654287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DCHS1	NM_003737	exon6	c.G2456T	p.G819V	AAGCGACCTAGGG	.	24	6	18	0	.	73	A	6654287	C	A	6654287	3	1	144	1	0	0	0	0	1	0	0	0	4287	521	18	3	7504	3	DCHS1	11	6654287	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		6654287	128352229	106	18597											
EIF4G2	1982	ucsc.edu;bcgsc.ca	37	11	10828411	10828411	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EIF4G2	NM_001042559	exon3	c.A63G	p.G21G	CCTACTTCCTCCT	.	45	4	39	0	.	91	C	10828411	T	C	10828411	2	2	144	1	0	0	0	0	0	0	0	1	5037	1770	62	2		2	EIF4G2	11	10828411	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	4174124	10828411	124178105	107	18598											
FNBP4	23360	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47745708	47745708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FNBP4	NM_015308	exon14	c.C2336T	p.T779I	GAGATGGTGGAAT	.	52	10	54	0	.	91	A	47745708	G	A	47745708	3	1	144	1	0	0	0	0	1	0	0	0	5967	1261	44	3	733	3	FNBP4	11	47745708	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	36917297	47745708	87260808	108	18599											
DAK	26007	ucsc.edu;bcgsc.ca	37	11	61113369	61113369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DAK	NM_015533	exon17	c.G1526T	p.W509L	AAGCCTGGAAGAG	.	37	4	39	0	.	115	T	61113369	G	T	61113369	3	4	144	1	0	0	0	0	1	0	0	0	4228	1357	47	3	1588	3	DAK	11	61113369	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	13367661	61113369	73893147	109	18600											
CYBASC3	220002	ucsc.edu;bcgsc.ca	37	11	61120553	61120553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CYBASC3	NM_001161454	exon6	c.T503C	p.L168P	TTTAGGAGGCTGC	.	48	4	41	0	.	90	G	61120553	A	G	61120553	3	3	144	1	0	0	0	0	1	0	0	0	4132	304	11	2	288	2	CYBASC3	11	61120553	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	7184	61120553	73885963	110	18601											
BEST1	7439	hgsc.bcm.edu;broad.mit.edu	37	11	61723374	61723376	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BEST1	NM_004183	exon4	c.432_434del	p.144_145del	CGTCAGCACCGCA	.	35	13	25	0	.	90	-	61723376	CAC	-	61723374	7	5	144	1	0	1	0	1	0	0	0	0	1404	709	25	0	442	0	BEST1	11	61723374	In_Frame_Del	DEL	CAC	TCGA-G3-A25W-01A-11D-A16V-10	602821	61723374	73283142	111	18602											
GANAB	23193	ucsc.edu;bcgsc.ca	37	11	62394348	62394348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GANAB	NM_198335	exon21	c.C2447T	p.P816L	GTTACAGGCAGGT	.	35	4	56	1	.	94	A	62394348	G	A	62394348	3	1	144	1	0	0	0	0	1	0	0	0	6233	1000	35	3	473	3	GANAB	11	62394348	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	670974	62394348	72612168	112	18603											
RIN1	9610	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66101485	66101485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RIN1	NM_004292	exon7	c.T1496C	p.L499P	TGCAGCAGCTTCT	.	57	9	46	0	.	710	G	66101485	A	G	66101485	3	3	144	1	0	0	0	0	1	0	0	0	13371	188	7	2	871	2	RIN1	11	66101485	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	3707137	66101485	68905031	113	18604											
DPP3	10072	ucsc.edu;bcgsc.ca	37	11	66262718	66262718	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DPP3	NM_130443	exon13	c.C1431A	p.I477I	AGTGATCAACCCA	.	25	4	33	0	.	46	A	66262718	C	A	66262718	2	1	144	1	0	0	0	0	0	0	0	1	4728	816	29	3		3	DPP3	11	66262718	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	161233	66262718	68743798	114	18605											
KDM2A	22992	ucsc.edu;bcgsc.ca	37	11	66975111	66975111	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KDM2A	NM_012308	exon6	c.C438A	p.L146L	CAGCCTCGAGTTT	.	41	4	51	0	.	661	A	66975111	C	A	66975111	2	1	144	1	0	0	0	0	0	0	0	1	8124	871	31	1		1	KDM2A	11	66975111	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	712393	66975111	68031405	115	18606											
PPP1CA	5499	ucsc.edu;bcgsc.ca	37	11	67166297	67166297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PPP1CA	NM_001008709	exon6	c.A811G	p.K271E	GCCGCTTGGCAAA	.	20	4	17	0	.	659	C	67166297	T	C	67166297	3	2	144	1	0	0	0	0	1	0	0	0	12349	1821	63	2	222	2	PPP1CA	11	67166297	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	191186	67166297	67840219	116	18607											
CPT1A	1374	ucsc.edu;bcgsc.ca	37	11	68527778	68527778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CPT1A	NM_001876	exon17	c.C2057T	p.T686I	TGGCTTGTTGATA	.	46	4	47	0	.	149	A	68527778	G	A	68527778	3	1	144	1	0	0	0	0	1	0	0	0	3831	1377	48	3	316	3	CPT1A	11	68527778	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	1361481	68527778	66478738	117	18608											
RSF1	51773	ucsc.edu;bcgsc.ca	37	11	77378439	77378439	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RSF1	NM_016578	exon16	c.A3849G	p.E1283E	ATCTGCTTCTGAA	.	42	4	41	0	.	93	C	77378439	T	C	77378439	2	2	144	1	0	0	0	0	0	0	0	1	13699	1606	56	2		2	RSF1	11	77378439	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	8850661	77378439	57628077	118	18609											
HEPHL1	341208	ucsc.edu;bcgsc.ca	37	11	93778947	93778947	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HEPHL1	NM_001098672	exon2	c.A279G	p.K93K	CCCCAAACCTCCC	.	47	4	59	1	.	71	G	93778947	A	G	93778947	2	3	144	1	0	0	0	0	0	0	0	1	7055	40	2	2		2	HEPHL1	11	93778947	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	16400508	93778947	41227569	119	18610											
NPAT	4863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108032148	108032148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NPAT	NM_002519	exon17	c.C3665T	p.S1222L	CCTACTGAAAGTA	.	250	42	285	1	.	117	A	108032148	G	A	108032148	3	1	144	1	0	0	0	0	1	0	0	0	10566	1294	45	3	626	3	NPAT	11	108032148	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	14253201	108032148	26974368	120	18611											
UBASH3B	84959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122659905	122659905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UBASH3B	NM_032873	exon6	c.G869A	p.S290N	AGACCAGCACCAG	.	48	9	32	0	.	68	A	122659905	G	A	122659905	3	1	144	1	0	0	0	0	1	0	0	0	16837	971	34	3	891	3	UBASH3B	11	122659905	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	14627757	122659905	12346611	121	18612											
MLF2	8079	ucsc.edu;bcgsc.ca	37	12	6859046	6859046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MLF2	NM_005439	exon7	c.A527G	p.E176G	CGCTCCTCCTGGT	.	31	5	29	0	.	153	C	6859046	T	C	6859046	3	2	144	1	0	0	0	0	1	0	0	0	9616	1551	54	2	227	2	MLF2	12	6859046	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10		6859046	126992849	122	18613											
A2M	2	ucsc.edu;bcgsc.ca	37	12	9225057	9225057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	A2M	NM_000014	exon31	c.C4001A	p.P1334Q	TTTTCTGGGAGAA	.	45	4	49	0	.	515	T	9225057	G	T	9225057	3	4	144	1	0	0	0	0	1	0	0	0	4	1348	47	3	447	3	A2M	12	9225057	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	2366011	9225057	124626838	123	18614											
ST8SIA1	6489	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22486954	22486954	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ST8SIA1	NM_003034	exon1	c.C213G	p.N71K	GGTCTGGTTCCTC	.	27	9	21	0	.	93	C	22486954	G	C	22486954	3	2	144	1	0	0	0	0	1	0	0	0	15230	1252	44	4	877	4	ST8SIA1	12	22486954	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	13261897	22486954	111364941	124	18615											
LRMP	4033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	25232338	25232338	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRMP	NM_001204126	exon6	c.T78A	p.Y26X	GGAATATTCCTCA	.	123	22	109	0	.	228	A	25232338	T	A	25232338	4	1	144	1	0	0	0	0	0	1	0	0	8950	1500	52	4	88	4	LRMP	12	25232338	Nonsense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	2745384	25232338	108619557	125	18616											
SLC38A2	54407	ucsc.edu;bcgsc.ca	37	12	46756885	46756885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SLC38A2	NM_018976	exon13	c.G1098T	p.L366F	AGTTCCCAAGATA	.	40	5	47	0	.	226	A	46756885	C	A	46756885	3	1	144	1	0	0	0	0	1	0	0	0	14604	593	21	3	438	3	SLC38A2	12	46756885	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	21524547	46756885	87095010	126	18617											
CCDC65	85478	ucsc.edu;bcgsc.ca	37	12	49298806	49298806	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CCDC65	NM_033124	exon2	c.G210T	p.R70R	CCTTCGGGAAGTC	.	40	4	43	0	.	92	T	49298806	G	T	49298806	2	4	144	1	0	0	0	0	0	0	0	1	2837	1219	43	3		3	CCDC65	12	49298806	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	2541921	49298806	84553089	127	18618											
HELB	92797	ucsc.edu;bcgsc.ca	37	12	66725072	66725072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HELB	NM_033647	exon12	c.A2809G	p.M937V	GCCATTATGAAAA	.	34	4	41	1	.	515	G	66725072	A	G	66725072	3	3	144	1	0	0	0	0	1	0	0	0	7045	449	16	2	2855	2	HELB	12	66725072	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	17426266	66725072	67126823	128	18619											
OSBPL8	114882	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	76765334	76765334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	OSBPL8	NM_020841	exon19	c.A1948G	p.T650A	TATCAGTCTTTTT	.	65	12	54	0	.	69	C	76765334	T	C	76765334	3	2	144	1	0	0	0	0	1	0	0	0	11283	1667	58	2	745	2	OSBPL8	12	76765334	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	10040262	76765334	57086561	129	18620											
NTN4	59277	ucsc.edu;bcgsc.ca	37	12	96181034	96181034	+	Silent	SNP	G	G	A	rs138865446	byfrequency	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NTN4	NM_021229	exon2	c.C268T	p.L90L	ATGGCAGGTGAGC	.	43	4	36	0	G|1.000;A|0.000	92	A	96181034	G	A	96181034	2	1	144	1	0	0	0	0	0	0	0	1	10702	991	35	3		3	NTN4	12	96181034	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	19415700	96181034	37670861	130	18621											
RIC8B	55188	ucsc.edu;bcgsc.ca	37	12	107254187	107254187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RIC8B	NM_018157	exon8	c.C1448A	p.P483Q	CAAAACCAAAGTA	.	39	4	53	0	.	91	A	107254187	C	A	107254187	3	1	144	1	0	0	0	0	1	0	0	0	13356	594	21	3	1478	3	RIC8B	12	107254187	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	11073153	107254187	26597708	131	18622											
GIT2	9815	broad.mit.edu;bcgsc.ca	37	12	110390905	110390905	+	Silent	SNP	G	G	T	rs143551429	byfrequency;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GIT2	NM_001135213	exon14	c.C1240A	p.R414R	TCTGCCGGTTTGT	.	171	7	154	2	G|0.999;A|0.001	226	T	110390905	G	T	110390905	2	4	144	1	0	0	0	0	0	0	0	1	6397	1115	39	1		1	GIT2	12	110390905	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	3136718	110390905	23460990	132	18623											
MAPKAPK5	8550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112308091	112308091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MAPKAPK5	NM_139078	exon6	c.G410A	p.R137Q	CTCTGCGGCACTG	.	151	27	149	0	.	1215	A	112308091	G	A	112308091	3	1	144	1	0	0	0	0	1	0	0	0	9291	1116	39	1	432	1	MAPKAPK5	12	112308091	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	1917186	112308091	21543804	133	18624											
OAS2	4939	ucsc.edu;bcgsc.ca	37	12	113433226	113433226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	OAS2	NM_002535	exon3	c.C574A	p.R192S	GACAACCGTCCTG	.	41	4	48	0	.	91	A	113433226	C	A	113433226	3	1	144	1	0	0	0	0	1	0	0	0	10800	652	23	1	655	1	OAS2	12	113433226	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	1125135	113433226	20418669	134	18625											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	124835268	124835268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NCOR2	NM_006312	exon30	c.G3709A	p.V1237I	ACAGGACGTCAGC	.	32	10	14	0	.	229	T	124835268	C	T	124835268	3	4	144	1	0	0	0	0	1	0	0	0	10236	536	19	1	3915	1	NCOR2	12	124835268	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	11402042	124835268	9016627	135	18626											
PARP4	143	ucsc.edu;bcgsc.ca	37	13	25026551	25026551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PARP4	NM_006437	exon24	c.G3007T	p.G1003C	CGATACCGCAGGC	.	45	4	39	0	.	94	A	25026551	C	A	25026551	3	1	144	1	0	0	0	0	1	0	0	0	11463	652	23	1	2211	1	PARP4	13	25026551	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		25026551	90143327	136	18627											
USP12	219333	ucsc.edu;bcgsc.ca	37	13	27643523	27643523	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	USP12	NM_182488	exon10	c.1012-2A>G	.	ATTTTCTGTGAGG	.	46	4	57	0	.	522	C	27643523	T	C	27643523	5	2	144	1	0	0	0	0	0	0	1	0	17040	1594	55	2	106	2	USP12	13	27643523	Splice_Site	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	2616972	27643523	87526355	137	18628											
LNX2	222484	ucsc.edu;bcgsc.ca	37	13	28124470	28124470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LNX2	NM_153371	exon9	c.A1937G	p.K646R	ACTCACTTTAATC	.	43	4	33	0	.	228	C	28124470	T	C	28124470	3	2	144	1	0	0	0	0	1	0	0	0	8866	1623	56	2	143	2	LNX2	13	28124470	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	480947	28124470	87045408	138	18629											
CPB2	1361	ucsc.edu;bcgsc.ca	37	13	46652945	46652945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CPB2	NM_001872	exon5	c.A476G	p.Y159C	AAAACATAGAGTG	.	30	4	37	0	.	92	C	46652945	T	C	46652945	3	2	144	1	0	0	0	0	1	0	0	0	3797	1406	49	2	823	2	CPB2	13	46652945	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	18528475	46652945	68516933	139	18630											
ZIC5	85416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100617641	100617641	+	Missense_Mutation	SNP	G	G	A	rs146570814		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZIC5	NM_033132	exon2	c.C1982T	p.T661M	TGTATCGTCCGCA	.	63	13	60	0	G|1.000;A|0.000	90	A	100617641	G	A	100617641	3	1	144	1	0	0	0	0	1	0	0	0	17679	1145	40	1	13	1	ZIC5	13	100617641	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	53964696	100617641	14552237	140	18631											
MYO16	23026	broad.mit.edu;mdanderson.org	37	13	109507803	109507803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYO16	NM_001198950	exon11	c.C1261T	p.P421S	CTAATGCCTCCTG	.	56	11	57	2	.	142	T	109507803	C	T	109507803	3	4	144	1	0	0	0	0	1	0	0	0	10064	739	26	3	1233	3	MYO16	13	109507803	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	8890162	109507803	5662075	141	18632											
SEC23A	10484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	39524374	39524374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEC23A	NM_006364	exon14	c.G1632T	p.R544S	CAGCCACCTAAGC	.	96	21	83	0	.	95	A	39524374	C	A	39524374	3	1	144	1	0	0	0	0	1	0	0	0	13991	506	18	3	693	3	SEC23A	14	39524374	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		39524374	67825166	142	18633											
FBXO34	55030	ucsc.edu;bcgsc.ca	37	14	55819116	55819116	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FBXO34	NM_017943	exon2	c.C2008A	p.R670R	TGCCACCGGTCTC	.	45	4	30	0	.	228	A	55819116	C	A	55819116	2	1	144	1	0	0	0	0	0	0	0	1	5744	643	23	1		1	FBXO34	14	55819116	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	16294742	55819116	51530424	143	18634											
GALC	2581	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	88416215	88416215	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GALC	NM_000153	exon12	c.C1312G	p.L438V	TAAAAAGAAATCT	.	58	11	65	1	.	90	C	88416215	G	C	88416215	3	2	144	1	0	0	0	0	1	0	0	0	6201	942	33	4	769	4	GALC	14	88416215	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	32597099	88416215	18933325	144	18635											
EML5	161436	broad.mit.edu;bcgsc.ca	37	14	89124556	89124556	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EML5	NM_183387	exon26	c.C3852A	p.S1284S	AATGTCGGATTCT	.	125	7	96	1	.	93	T	89124556	G	T	89124556	2	4	144	1	0	0	0	0	0	0	0	1	5100	1103	39	1		1	EML5	14	89124556	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	708341	89124556	18224984	145	18636											
SERPINA10	51156	ucsc.edu;bcgsc.ca	37	14	94752572	94752572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SERPINA10	NM_001100607	exon4	c.A1016G	p.K339R	TTGAACTTCGGAA	.	48	8	36	0	.	228	C	94752572	T	C	94752572	3	2	144	1	0	0	0	0	1	0	0	0	14087	1609	56	2	326	2	SERPINA10	14	94752572	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	5628016	94752572	12596968	146	18637											
CYFIP1	23191	ucsc.edu;bcgsc.ca	37	15	22956491	22956491	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CYFIP1	NM_014608	exon16	c.C1728A	p.S576S	TGGTTCCAAGAAA	.	47	4	39	0	.	99	A	22956491	C	A	22956491	2	1	144	1	0	0	0	0	0	0	0	1	4137	581	21	3		3	CYFIP1	15	22956491	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		22956491	79574901	147	18638											
SPG11	80208	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44943731	44943731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SPG11	NM_025137	exon6	c.G1414T	p.V472L	TGTCTACAGGAAT	.	42	8	50	0	.	95	A	44943731	C	A	44943731	3	1	144	1	0	0	0	0	1	0	0	0	15040	478	17	3	6057	3	SPG11	15	44943731	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	21987240	44943731	57587661	148	18639											
TSC2	7249	ucsc.edu;bcgsc.ca	37	16	2112539	2112539	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TSC2	NM_001114382	exon13	c.C1299T	p.S433S	GCAGTCCATCCAC	.	42	4	40	0	.	1908	T	2112539	C	T	2112539	2	4	144	1	0	0	0	0	0	0	0	1	16603	581	21	3		3	TSC2	16	2112539	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		2112539	88242214	149	18640											
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4945347	4945347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PPL	NM_002705	exon11	c.A1157T	p.Q386L	ACCTGCTGGCCTC	.	26	4	34	0	.	95	A	4945347	T	A	4945347	3	1	144	1	0	0	0	0	1	0	0	0	12334	1580	55	4	4161	4	PPL	16	4945347	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	2832808	4945347	85409406	150	18641											
GP2	2813	ucsc.edu;bcgsc.ca	37	16	20328667	20328667	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GP2	NM_001007240	exon9	c.C1293T	p.H431H	CTCCACGTGGATG	.	41	4	41	0	.	94	A	20328667	G	A	20328667	2	1	144	1	0	0	0	0	0	0	0	1	6582	1136	40	1		1	GP2	16	20328667	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	15383320	20328667	70026086	151	18642											
VWA3A	146177	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22144300	22144300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	VWA3A	NM_173615	exon20	c.A1952G	p.E651G	TGGGCGAGCCAAA	.	27	6	24	1	.	1	G	22144300	A	G	22144300	3	3	144	1	0	0	0	0	1	0	0	0	17237	304	11	2	2030	2	VWA3A	16	22144300	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	1815633	22144300	68210453	152	18643											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24802369	24802369	+	Silent	SNP	G	G	A	rs113829020	byfrequency;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TNRC6A	NM_014494	exon6	c.G2406A	p.G802G	CCAGGGGGGGTGG	.	24	12	27	0	G|0.997;C|0.003	92	A	24802369	G	A	24802369	2	1	144	1	0	0	0	0	0	0	0	1	16337	1219	43	3		3	TNRC6A	16	24802369	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	2658069	24802369	65552384	153	18644											
PRRT2	112476	ucsc.edu;bcgsc.ca	37	16	29825202	29825202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRRT2	NM_001256442	exon2	c.G827T	p.C276F	TGTCCTGCTTCTG	.	40	4	44	0	.	68	T	29825202	G	T	29825202	3	4	144	1	0	0	0	0	1	0	0	0	12610	1319	46	3	829	3	PRRT2	16	29825202	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	5022833	29825202	60529551	154	18645											
SHCBP1	79801	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46615855	46615855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SHCBP1	NM_024745	exon13	c.C1805T	p.T602I	GGGTCAGTTCTTG	.	96	23	110	1	.	154	A	46615855	G	A	46615855	3	1	144	1	0	0	0	0	1	0	0	0	14274	1029	36	3	217	3	SHCBP1	16	46615855	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	16790653	46615855	43738898	155	18646											
PHKB	5257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47533690	47533690	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PHKB	NM_000293	exon3	c.C190G	p.Q64E	CTGTATCAAAGTC	.	23	7	32	0	.	154	G	47533690	C	G	47533690	3	3	144	1	0	0	0	0	1	0	0	0	11845	827	29	4	259	4	PHKB	16	47533690	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	917835	47533690	42821063	156	18647											
CHD9	80205	ucsc.edu;bcgsc.ca	37	16	53357978	53357978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CHD9	NM_025134	exon39	c.T7817C	p.V2606A	GTCCCGTTGTGAG	.	41	4	39	0	.	272	C	53357978	T	C	53357978	3	2	144	1	0	0	0	0	1	0	0	0	3332	1725	60	2	7967	2	CHD9	16	53357978	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	5824288	53357978	36996775	157	18648											
NLRC5	84166	ucsc.edu;bcgsc.ca	37	16	57075465	57075465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NLRC5	NM_032206	exon17	c.A3008G	p.H1003R	GCTGCCACCTCGG	.	35	4	33	0	.	159	G	57075465	A	G	57075465	3	3	144	1	0	0	0	0	1	0	0	0	10470	159	6	2	3070	2	NLRC5	16	57075465	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	3717487	57075465	33279288	158	18649											
CMTM2	146225	ucsc.edu;bcgsc.ca	37	16	66613724	66613724	+	Silent	SNP	C	C	A	rs111592429	byfrequency;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CMTM2	NM_001199317	exon1	c.C214A	p.R72R	CGCTACCGGTGGG	.	67	6	53	0	C|0.994;T|0.006	91	A	66613724	C	A	66613724	2	1	144	1	0	0	0	0	0	0	0	1	3583	643	23	1		1	CMTM2	16	66613724	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	9538259	66613724	23741029	159	18650											
ZCCHC14	23174	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87446754	87446754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZCCHC14	NM_015144	exon11	c.G1240A	p.G414S	AACTGCCTTCCCG	.	30	7	23	0	.	154	T	87446754	C	T	87446754	3	4	144	1	0	0	0	0	1	0	0	0	17580	681	24	3	1621	3	ZCCHC14	16	87446754	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	20833030	87446754	2907999	160	18651											
BCL6B	255877	ucsc.edu;bcgsc.ca	37	17	6927950	6927950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BCL6B	NM_181844	exon4	c.G632T	p.S211I	CAGGGAGCCTGGT	.	29	4	39	0	.	227	T	6927950	G	T	6927950	3	4	144	1	0	0	0	0	1	0	0	0	1377	971	34	3	642	3	BCL6B	17	6927950	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		6927950	74267260	161	18652											
POLR2A	5430	ucsc.edu;bcgsc.ca	37	17	7416382	7416382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	POLR2A	NM_000937	exon29	c.A4799T	p.Y1600F	CTGCCTACGAGCC	.	57	5	77	0	.	91	T	7416382	A	T	7416382	3	4	144	1	0	0	0	0	1	0	0	0	12214	391	14	4	4913	4	POLR2A	17	7416382	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	488432	7416382	73778828	162	18653											
MYH10	4628	ucsc.edu;bcgsc.ca	37	17	8381680	8381680	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYH10	NM_001256012	exon41	c.A5682G	p.R1894R	CGCGTGTCGACGC	.	47	4	61	0	.	92	C	8381680	T	C	8381680	2	2	144	1	0	0	0	0	0	0	0	1	10030	1654	58	2		2	MYH10	17	8381680	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	965298	8381680	72813530	163	18654											
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11593141	11593141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DNAH9	NM_001372	exon20	c.G4002T	p.L1334F	GGAGTTGGAGTGC	.	47	4	46	0	.	168	T	11593141	G	T	11593141	3	4	144	1	0	0	0	0	1	0	0	0	4608	1339	47	3	4080	3	DNAH9	17	11593141	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	3211461	11593141	69602069	164	18655											
RAB34	83871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27041897	27041897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RAB34	NM_001144943	exon10	c.T797C	p.F266S	CGGAAGAAGAATT	.	41	12	26	0	.	227	G	27041897	A	G	27041897	3	3	144	1	0	0	0	0	1	0	0	0	12924	246	9	2	225	2	RAB34	17	27041897	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	15448756	27041897	54153313	165	18656											
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41347052	41347052	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NBR1	NM_031862	exon14	c.T1746G	p.P582P	CACCCCTGTGGGT	.	117	16	102	0	.	130	G	41347052	T	G	41347052	2	3	144	1	0	0	0	0	0	0	0	1	10200	1567	55	5		5	NBR1	17	41347052	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	14305155	41347052	39848158	166	18657											
MPP3	4356	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41879127	41879127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MPP3	NM_001932	exon20	c.T1700C	p.V567A	AAGACCACTTTGA	.	20	5	25	0	.	91	G	41879127	A	G	41879127	3	3	144	1	0	0	0	0	1	0	0	0	9735	159	6	2	61	2	MPP3	17	41879127	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	532075	41879127	39316083	167	18658											
GPS1	2873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80011842	80011842	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GPS1	NM_212492	exon3	c.G345A	p.L115L	GGCCCTGAAGATG	.	34	8	16	0	.	226	A	80011842	G	A	80011842	2	1	144	1	0	0	0	0	0	0	0	1	6732	1277	45	3		3	GPS1	17	80011842	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	38132715	80011842	1183368	168	18659											
LRRC30	339291	ucsc.edu;bcgsc.ca	37	18	7231329	7231329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRRC30	NM_001105581	exon1	c.G193T	p.D65Y	ATCCCCGACTTTC	.	40	4	44	0	.	24	T	7231329	G	T	7231329	3	4	144	1	0	0	0	0	1	0	0	0	8985	1058	37	1	195	1	LRRC30	18	7231329	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		7231329	70845919	169	18660											
IMPACT	55364	ucsc.edu;bcgsc.ca	37	18	22023067	22023067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IMPACT	NM_018439	exon7	c.G545T	p.R182L	CAGACCGAAGAAG	.	40	4	54	0	.	90	T	22023067	G	T	22023067	3	4	144	1	0	0	0	0	1	0	0	0	7724	1058	37	1	571	1	IMPACT	18	22023067	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	14791738	22023067	56054181	170	18661											
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54362254	54362254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	WDR7	NM_052834	exon11	c.A1182G	p.I394M	AATTATAGATCAG	.	130	29	130	0	.	93	G	54362254	A	G	54362254	3	3	144	1	0	0	0	0	1	0	0	0	17317	410	15	2	1220	2	WDR7	18	54362254	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	32339187	54362254	23714994	171	18662											
ZNF532	55205	ucsc.edu;bcgsc.ca	37	18	56646394	56646394	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF532	NM_018181	exon9	c.C3258A	p.A1086A	GTACGCCTGCTCG	.	47	4	60	0	.	154	A	56646394	C	A	56646394	2	1	144	1	0	0	0	0	0	0	0	1	17969	668	24	3		3	ZNF532	18	56646394	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	2284140	56646394	21430854	172	18663											
RTTN	25914	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67871371	67871371	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RTTN	NM_173630	exon3	c.T348C	p.P116P	TTCCGAAGGAAGA	.	85	13	97	1	.	141	G	67871371	A	G	67871371	2	3	144	1	0	0	0	0	0	0	0	1	13737	59	3	2		2	RTTN	18	67871371	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	11224977	67871371	10205877	173	18664											
PCSK4	54760	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1484037	1484037	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PCSK4	NM_017573	exon9	c.G1158A	p.A386A	CTCCAGCGCTAGG	.	33	11	28	0	.	90	T	1484037	C	T	1484037	2	4	144	1	0	0	0	0	0	0	0	1	11602	755	27	1		1	PCSK4	19	1484037	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		1484037	57644946	174	18665											
ATP8B3	148229	broad.mit.edu;bcgsc.ca	37	19	1807173	1807173	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_138813	exon6	c.C609T	p.D203D	CATGTCGTCCACC	.	58	7	46	0	.	.	A	1807173	G	A	1807173	2	1	144	1	0	0	0	0	0	0	0	1	1196	1136	40	1		1	ATP8B3	19	1807173	Silent	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	323136	1807173	57321810	175	18666											
SHD	56961	ucsc.edu;bcgsc.ca	37	19	4280289	4280289	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SHD	NM_020209	exon1	c.C229A	p.R77R	AAGCACCGGCTCA	.	42	4	35	0	.	90	A	4280289	C	A	4280289	2	1	144	1	0	0	0	0	0	0	0	1	14275	643	23	1		1	SHD	19	4280289	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	2473116	4280289	54848694	176	18667											
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9048403	9048403	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MUC16	NM_024690	exon5	c.T33228C	p.S11076S	CCCATGACTGGTG	.	48	4	78	0	.	566	G	9048403	A	G	9048403	2	3	144	1	0	0	0	0	0	0	0	1	9973	272	10	2		2	MUC16	19	9048403	Silent	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	4768114	9048403	50080580	177	18668											
SMARCA4	6597	ucsc.edu;bcgsc.ca	37	19	11118666	11118666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SMARCA4	NM_003072	exon14	c.A2090G	p.D697G	GCGATGACGTCTC	.	45	4	43	0	.	1523	G	11118666	A	G	11118666	3	3	144	1	0	0	0	0	1	0	0	0	14770	275	10	2	2140	2	SMARCA4	19	11118666	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	2070263	11118666	48010317	178	18669											
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36049328	36049328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ATP4A	NM_000704	exon10	c.T1436C	p.M479T	TAGCCCATGGCGT	.	43	5	43	0	.	91	G	36049328	A	G	36049328	3	3	144	1	0	0	0	0	1	0	0	0	1145	217	8	2	1723	2	ATP4A	19	36049328	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	24930662	36049328	23079655	179	18670											
ZNF233	353355	ucsc.edu;bcgsc.ca	37	19	44777921	44777921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF233	NM_001207005	exon5	c.T1108C	p.C370R	AAGTTGTGTACAT	.	44	4	48	0	.	92	C	44777921	T	C	44777921	3	2	144	1	0	0	0	0	1	0	0	0	17783	1696	59	2	1122	2	ZNF233	19	44777921	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	8728593	44777921	14351062	180	18671											
HSD17B14	51171	ucsc.edu;bcgsc.ca	37	19	49316448	49316448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HSD17B14	NM_016246	exon9	c.C797A	p.P266H	ATATCGGGGGCGT	.	28	4	51	0	.	90	T	49316448	G	T	49316448	3	4	144	1	0	0	0	0	1	0	0	0	7383	1232	43	3	19	3	HSD17B14	19	49316448	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	4538527	49316448	9812535	181	18672											
PPP1R15A	23645	ucsc.edu;bcgsc.ca	37	19	49379178	49379178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PPP1R15A	NM_014330	exon3	c.G1973A	p.R658H	CTTCCCGCTCGTC	.	56	9	64	0	.	226	A	49379178	G	A	49379178	3	1	144	1	0	0	0	0	1	0	0	0	12363	1087	38	1	1979	1	PPP1R15A	19	49379178	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	62730	49379178	9749805	182	18673											
ZNF473	25888	ucsc.edu;bcgsc.ca	37	19	50550100	50550100	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF473	NM_015428	exon5	c.T2400C	p.N800N	AGCAAATCTAACA	.	34	4	33	0	.	91	C	50550100	T	C	50550100	2	2	144	1	0	0	0	0	0	0	0	1	17928	1432	50	2		2	ZNF473	19	50550100	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	1170922	50550100	8578883	183	18674											
KLK1	3816	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51323553	51323553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KLK1	NM_002257	exon3	c.G353C	p.S118T	TCGTGGCTGTAGT	.	121	17	108	1	.	226	G	51323553	C	G	51323553	3	3	144	1	0	0	0	0	1	0	0	0	8397	797	28	4	447	4	KLK1	19	51323553	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	773453	51323553	7805430	184	18675											
ZNF578	147660	ucsc.edu;bcgsc.ca	37	19	53015353	53015353	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001099694	exon6	c.T1719A	p.G573G	GTGTGGTAAGGCT	.	40	4	39	0	.	.	A	53015353	T	A	53015353	2	1	144	1	0	0	0	0	0	0	0	1	18007	1625	57	4		4	ZNF578	19	53015353	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	1691800	53015353	6113630	185	18676											
PRKCG	5582	ucsc.edu;bcgsc.ca	37	19	54403529	54403529	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRKCG	NM_002739	exon12	c.T1324C	p.L442L	GGAGACTTGATGT	.	32	5	29	1	.	1367	C	54403529	T	C	54403529	2	2	144	1	0	0	0	0	0	0	0	1	12512	1606	56	2		2	PRKCG	19	54403529	Silent	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	1388176	54403529	4725454	186	18677											
FLRT3	23767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	14306475	14306475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FLRT3	NM_013281	exon2	c.T1678A	p.S560T	TCCTTGAGAAGAG	.	154	31	146	0	.	91	T	14306475	A	T	14306475	3	4	144	1	0	0	0	0	1	0	0	0	5940	304	11	4	275	4	FLRT3	20	14306475	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10		14306475	48719045	187	18678											
CD93	22918	ucsc.edu;bcgsc.ca	37	20	23065836	23065836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CD93	NM_012072	exon1	c.C994A	p.Q332K	ACCCTTGGGGGCA	.	42	5	36	0	.	153	T	23065836	G	T	23065836	3	4	144	1	0	0	0	0	1	0	0	0	3047	1357	47	3	972	3	CD93	20	23065836	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	8759361	23065836	39959684	188	18679											
RIMS4	140730	ucsc.edu;bcgsc.ca	37	20	43384815	43384815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RIMS4	NM_001205317	exon6	c.C773T	p.S258F	TCGAGGGACAACT	.	44	6	33	0	.	94	A	43384815	G	A	43384815	3	1	144	1	0	0	0	0	1	0	0	0	13370	1174	41	3	43	3	RIMS4	20	43384815	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	20318979	43384815	19640705	189	18680											
SULF2	55959	ucsc.edu;bcgsc.ca	37	20	46307514	46307514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SULF2	NM_001161841	exon8	c.C1099A	p.P367T	TGGTGGGGGCCAG	.	49	5	52	0	.	293	T	46307514	G	T	46307514	3	4	144	1	0	0	0	0	1	0	0	0	15370	1232	43	3	1569	3	SULF2	20	46307514	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	2922699	46307514	16718006	190	18681											
MYT1	4661	ucsc.edu;bcgsc.ca	37	20	62839474	62839474	+	Missense_Mutation	SNP	C	C	A	rs200028860	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYT1	NM_004535	exon7	c.C925A	p.P309T	GCAGCTCCTGATG	.	27	6	21	0	C|1.000;T|0.000	704	A	62839474	C	A	62839474	3	1	144	1	0	0	0	0	1	0	0	0	10106	855	30	3	943	3	MYT1	20	62839474	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	16531960	62839474	186046	191	18682											
CLDN17	26285	ucsc.edu;bcgsc.ca	37	21	31538684	31538684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CLDN17	NM_012131	exon1	c.G252T	p.M84I	CACACACATGAGG	.	26	4	25	0	.	92	A	31538684	C	A	31538684	3	1	144	1	0	0	0	0	1	0	0	0	3478	478	17	3	426	3	CLDN17	21	31538684	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		31538684	16591211	192	18683											
ETS2	2114	ucsc.edu;bcgsc.ca	37	21	40186314	40186314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ETS2	NM_001256295	exon5	c.A722G	p.K241R	TTCCAAAGAGTAA	.	43	4	32	0	.	849	G	40186314	A	G	40186314	3	3	144	1	0	0	0	0	1	0	0	0	5276	72	3	2	312	2	ETS2	21	40186314	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	8647630	40186314	7943581	193	18684											
DEPDC5	9681	ucsc.edu;bcgsc.ca	37	22	32211144	32211144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DEPDC5	NM_001242897	exon21	c.C1612A	p.P538T	CCACACCCCCACC	.	48	5	48	0	.	519	A	32211144	C	A	32211144	3	1	144	1	0	0	0	0	1	0	0	0	4442	623	22	3	1690	3	DEPDC5	22	32211144	Missense_Mutation	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10		32211144	19093422	194	18685											
PRPS2	5634	broad.mit.edu;bcgsc.ca	37	X	12838909	12838909	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRPS2	NM_001039091	exon6	c.G860C	p.C287S	AACACTGCACCAA	.	50	7	52	0	.	130	C	12838909	G	C	12838909	3	2	144	1	0	0	0	0	1	0	0	0	12580	1319	46	4	882	4	PRPS2	23	12838909	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10		12838909	142431651	195	18686											
RPGR	6103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38144823	38144823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RPGR	NM_001034853	exon15	c.T3429G	p.N1143K	TAATACATTATTC	.	176	40	181	1	.	131	C	38144823	A	C	38144823	3	2	144	1	0	0	0	0	1	0	0	0	13548	214	8	5	592	5	RPGR	23	38144823	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	25305914	38144823	117125737	196	18687											
RLIM	51132	broad.mit.edu;bcgsc.ca	37	X	73812528	73812528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RLIM	NM_183353	exon5	c.622delC	p.Q208fs	TCCTCTGACCTCT	.	68	9	73	0	.	228	-	73812528	G	-	73812528	7	5	144	1	0	1	0	1	0	0	0	0	13390	1299	45	0	1256	0	RLIM	23	73812528	Frame_Shift_Del	DEL	G	TCGA-G3-A25W-01A-11D-A16V-10	35667705	73812528	81458032	197	18688											
LONRF3	79836	ucsc.edu;bcgsc.ca	37	X	118148310	118148310	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LONRF3	NM_001031855	exon10	c.C2115A	p.A705A	AGACGCCGATCCT	.	46	4	73	0	.	289	A	118148310	C	A	118148310	2	1	144	1	0	0	0	0	0	0	0	1	8896	639	23	1		1	LONRF3	23	118148310	Silent	SNP	C	TCGA-G3-A25W-01A-11D-A16V-10	44335782	118148310	37122250	198	18689											
ZNF75D	7626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134426310	134426310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF75D	NM_007131	exon3	c.A501C	p.Q167H	CATTGGTTGGGGC	.	74	10	87	1	.	130	G	134426310	T	G	134426310	3	3	144	1	0	0	0	0	1	0	0	0	18131	1722	60	5	1047	5	ZNF75D	23	134426310	Missense_Mutation	SNP	T	TCGA-G3-A25W-01A-11D-A16V-10	16278000	134426310	20844250	199	18690											
PASD1	139135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	150839639	150839639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PASD1	NM_173493	exon12	c.G1201T	p.A401S	CAGAATGCATTGG	.	109	21	94	0	.	133	T	150839639	G	T	150839639	3	4	144	1	0	0	0	0	1	0	0	0	11471	1319	46	3	1243	3	PASD1	23	150839639	Missense_Mutation	SNP	G	TCGA-G3-A25W-01A-11D-A16V-10	16413329	150839639	4430921	200	18691											
BRCC3	79184	broad.mit.edu;bcgsc.ca	37	X	154348355	154348355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BRCC3	NM_024332	exon11	c.A881G	p.N294S	AGCAAAACCAACA	.	86	6	100	0	.	706	G	154348355	A	G	154348355	3	3	144	1	0	0	0	0	1	0	0	0	1500	43	2	2	923	2	BRCC3	23	154348355	Missense_Mutation	SNP	A	TCGA-G3-A25W-01A-11D-A16V-10	3508716	154348355	922205	201	18692											
AGRN	375790	ucsc.edu;bcgsc.ca	37	1	979269	979269	+	Missense_Mutation	SNP	G	G	T	rs140789461	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AGRN	NM_198576	exon10	c.G1865T	p.R622L	GTCCCCGGTGTGA	.	43	4	59	0	G|1.000;A|0.000	136	T	979269	G	T	979269	3	4	145	1	0	0	0	0	1	0	0	0	397	1116	39	1	1903	1	AGRN	1	979269	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10		979269	248271352	1	18693											
PRDM2	7799	ucsc.edu;bcgsc.ca	37	1	14113012	14113012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRDM2	NM_015866	exon9	c.A5039G	p.N1680S	CTAGGAACTTCCT	.	42	4	47	0	.	116	G	14113012	A	G	14113012	3	3	145	1	0	0	0	0	1	0	0	0	12458	43	2	2	5069	2	PRDM2	1	14113012	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	13133743	14113012	235137609	2	18694											
HSPG2	3339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22173039	22173039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HSPG2	NM_005529	exon63	c.G8218A	p.E2740K	CCCCTTCGGCCAC	.	70	8	88	0	.	141	T	22173039	C	T	22173039	3	4	145	1	0	0	0	0	1	0	0	0	7430	893	31	1	5097	1	HSPG2	1	22173039	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	8060027	22173039	227077582	3	18695											
PAFAH2	5051	ucsc.edu;bcgsc.ca	37	1	26317250	26317250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAFAH2	NM_000437	exon2	c.T58C	p.C20R	CCCCACAGCCTAC	.	32	4	32	0	.	70	G	26317250	A	G	26317250	3	3	145	1	0	0	0	0	1	0	0	0	11387	188	7	2	1160	2	PAFAH2	1	26317250	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	4144211	26317250	222933371	4	18696											
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92433718	92433718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRDT	NM_001242806	exon4	c.G346T	p.V116F	GACATTGTTCTTA	.	50	16	58	0	.	374	T	92433718	G	T	92433718	3	4	145	1	0	0	0	0	1	0	0	0	1508	1377	48	3	356	3	BRDT	1	92433718	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	66116468	92433718	156816903	5	18697											
DPH5	51611	ucsc.edu;bcgsc.ca	37	1	101490900	101490900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DPH5	NM_001077395	exon2	c.T100A	p.Y34N	AGGTGTAGGCTTC	.	34	4	36	0	.	90	T	101490900	A	T	101490900	3	4	145	1	0	0	0	0	1	0	0	0	4723	420	15	4	785	4	DPH5	1	101490900	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	9057182	101490900	147759721	6	18698											
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115401205	115401205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SYCP1	NM_003176	exon6	c.A329G	p.Y110C	AACTGTATAAGGA	.	204	88	204	0	.	91	G	115401205	A	G	115401205	3	3	145	1	0	0	0	0	1	0	0	0	15428	449	16	2	347	2	SYCP1	1	115401205	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	13910305	115401205	133849416	7	18699											
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118035855	118035855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A2	NM_006699	exon9	c.G1255T	p.A419S	CATGAGGCAAGAA	.	74	24	91	0	.	90	T	118035855	G	T	118035855	3	4	145	1	0	0	0	0	1	0	0	0	9211	1203	42	3	1289	3	MAN1A2	1	118035855	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	2634650	118035855	131214766	8	18700											
NOTCH2	4853	ucsc.edu;bcgsc.ca	37	1	120512321	120512321	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOTCH2	NM_001200001	exon6	c.T921C	p.N307N	ACAGGCATTGGGC	.	63	6	95	0	.	1441	G	120512321	A	G	120512321	2	3	145	1	0	0	0	0	0	0	0	1	10548	214	8	2		2	NOTCH2	1	120512321	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	2476466	120512321	128738300	9	18701											
FCRL3	115352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157667132	157667132	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FCRL3	NM_052939	exon6	c.G642A	p.Q214Q	AGAGAGCTGGGTC	.	91	8	65	0	.	156	T	157667132	C	T	157667132	2	4	145	1	0	0	0	0	0	0	0	1	5796	796	28	3		3	FCRL3	1	157667132	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	37154811	157667132	91583489	10	18702											
GPR161	23432	broad.mit.edu;bcgsc.ca	37	1	168054960	168054960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR161	NM_001267609	exon7	c.G1459T	p.A487S	CTTTGGCCAAGCT	.	128	9	49	0	.	90	A	168054960	C	A	168054960	3	1	145	1	0	0	0	0	1	0	0	0	6665	739	26	3	194	3	GPR161	1	168054960	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	10387828	168054960	81195661	11	18703											
SELL	6402	broad.mit.edu;bcgsc.ca	37	1	169672458	169672458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SELL	NM_000655	exon6	c.G929T	p.G310V	TTCTTCCCAATTA	.	225	14	105	0	.	90	A	169672458	C	A	169672458	3	1	145	1	0	0	0	0	1	0	0	0	14016	623	22	3	244	3	SELL	1	169672458	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	1617498	169672458	79578163	12	18704											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179989459	179989459	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP350	NM_014810	exon12	c.C2550T	p.S850S	GGCCAGCATTAAC	.	81	19	49	0	.	26	T	179989459	C	T	179989459	2	4	145	1	0	0	0	0	0	0	0	1	3254	709	25	3		3	CEP350	1	179989459	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	10317001	179989459	69261162	13	18705											
FCAMR	83953	broad.mit.edu;bcgsc.ca	37	1	207134362	207134362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FCAMR	NM_001170631	exon6	c.A859G	p.T287A	GCCTGGTTGCTCC	.	143	8	101	0	.	91	C	207134362	T	C	207134362	3	2	145	1	0	0	0	0	1	0	0	0	5772	1725	60	2	886	2	FCAMR	1	207134362	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	27144903	207134362	42116259	14	18706											
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228525715	228525715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OBSCN	NM_001271223	exon78	c.G19742T	p.R6581L	CGCTGCGGGAAGG	.	53	5	32	0	.	403	T	228525715	G	T	228525715	3	4	145	1	0	0	0	0	1	0	0	0	10812	1116	39	1	17133	1	OBSCN	1	228525715	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	21391353	228525715	20724906	15	18707											
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247751732	247751732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR2G2	NM_001001915	exon1	c.C71T	p.P24L	ATTATCCTCAGTT	.	372	89	285	0	.	68	T	247751732	C	T	247751732	3	4	145	1	0	0	0	0	1	0	0	0	10998	681	24	3	73	3	OR2G2	1	247751732	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	19226017	247751732	1498889	16	18708											
RSAD2	91543	ucsc.edu;bcgsc.ca	37	2	7033836	7033836	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RSAD2	NM_080657	exon5	c.921+2T>C	.	AATATGTGAGTAT	.	63	6	39	0	.	90	C	7033836	T	C	7033836	5	2	145	1	0	0	0	0	0	0	1	0	13695	1710	59	2	941	2	RSAD2	2	7033836	Splice_Site	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		7033836	236165537	17	18709											
KCNF1	3754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	11053487	11053487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KCNF1	NM_002236	exon1	c.C935T	p.T312I	TGCAGACCCTCAC	.	68	19	60	0	.	91	T	11053487	C	T	11053487	3	4	145	1	0	0	0	0	1	0	0	0	8026	507	18	3	937	3	KCNF1	2	11053487	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	4019651	11053487	232145886	18	18710											
APOB	338	broad.mit.edu;bcgsc.ca	37	2	21230939	21230939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APOB	NM_000384	exon26	c.C8801A	p.P2934H	AATCTGGGGCAGG	.	203	9	158	1	.	175	T	21230939	G	T	21230939	3	4	145	1	0	0	0	0	1	0	0	0	785	1232	43	3	4906	3	APOB	2	21230939	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	10177452	21230939	221968434	19	18711											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37455644	37455644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEBPZ	NM_005760	exon2	c.C692G	p.S231C	GTAGAAGAGGCTC	.	122	30	82	0	.	91	C	37455644	G	C	37455644	3	2	145	1	0	0	0	0	1	0	0	0	3204	942	33	4	2532	4	CEBPZ	2	37455644	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	16224705	37455644	205743729	20	18712											
GFPT1	2673	ucsc.edu;bcgsc.ca	37	2	69581700	69581700	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GFPT1	NM_001244710	exon8	c.G606A	p.R202R	ACCTCGCCTGTAA	.	44	4	33	0	.	91	T	69581700	C	T	69581700	2	4	145	1	0	0	0	0	0	0	0	1	6345	753	26	3		3	GFPT1	2	69581700	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	32126056	69581700	173617673	21	18713											
ANXA4	307	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70015202	70015202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANXA4	NM_001153	exon3	c.C26T	p.T9I	GAGGTACTGTCAA	.	47	6	29	0	.	90	T	70015202	C	T	70015202	3	4	145	1	0	0	0	0	1	0	0	0	720	565	20	3	32	3	ANXA4	2	70015202	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	433502	70015202	173184171	22	18714											
LY75	4065	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160737645	160737645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY75	NM_002349	exon8	c.G1353T	p.E451D	ATTTGGCTCATTC	.	120	50	83	1	.	90	A	160737645	C	A	160737645	3	1	145	1	0	0	0	0	1	0	0	0	9099	796	28	3	3927	3	LY75	2	160737645	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	90722443	160737645	82461728	23	18715	104	2									
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160737646	160737646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY75	NM_002349	exon8	c.A1352T	p.E451V	TTTGGCTCATTCT	.	119	49	83	0	.	90	A	160737646	T	A	160737646	3	1	145	1	0	0	0	0	1	0	0	0	9099	1551	54	4	3928	4	LY75	2	160737646	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	1	160737646	82461727	24	18716	104	2									
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179419651	179419651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTN	NM_001267550	exon331	c.A88535G	p.E29512G	TTTAATTCATAGC	.	85	5	64	0	.	636	C	179419651	T	C	179419651	3	2	145	1	0	0	0	0	1	0	0	0	16732	1783	62	2	19572	2	TTN	2	179419651	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	18682005	179419651	63779722	25	18717											
OSGEPL1	64172	ucsc.edu;bcgsc.ca	37	2	190618641	190618641	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022353	exon6	c.963+1G>T	.	AACTTACCAGTAC	.	42	5	36	0	.	.	A	190618641	C	A	190618641	5	1	145	1	0	0	0	0	0	0	1	0	11288	521	18	3	296	3	OSGEPL1	2	190618641	Splice_Site	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	11198990	190618641	52580732	26	18718											
FAM124B	79843	broad.mit.edu;bcgsc.ca	37	2	225244374	225244374	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM124B	NM_001122779	exon2	c.C1284T	p.T428T	CTTCCTGGTACCA	.	103	6	71	0	.	92	A	225244374	G	A	225244374	2	1	145	1	0	0	0	0	0	0	0	1	5426	1335	47	3		3	FAM124B	2	225244374	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	34625733	225244374	17954999	27	18719											
ZNF620	253639	broad.mit.edu;bcgsc.ca	37	3	40557547	40557547	+	Silent	SNP	C	C	A	rs148212912	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF620	NM_175888	exon5	c.C462A	p.T154T	AGATACCTCAGCC	.	82	5	60	0	C|1.000;T|0.000	91	A	40557547	C	A	40557547	2	1	145	1	0	0	0	0	0	0	0	1	18041	668	24	3		3	ZNF620	3	40557547	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		40557547	157464883	28	18720											
CCDC13	152206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42754745	42754745	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC13	NM_144719	exon14	c.C1782T	p.R594R	CACGGTGCGGTGT	.	38	8	44	0	.	91	A	42754745	G	A	42754745	2	1	145	1	0	0	0	0	0	0	0	1	2765	1306	46	3		3	CCDC13	3	42754745	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	2197198	42754745	155267685	29	18721											
ZNF660	285349	ucsc.edu;bcgsc.ca	37	3	44636365	44636365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF660	NM_173658	exon3	c.T680C	p.F227S	AAACTTTCATCTT	.	41	4	28	0	.	90	C	44636365	T	C	44636365	3	2	145	1	0	0	0	0	1	0	0	0	18067	1783	62	2	682	2	ZNF660	3	44636365	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	1881620	44636365	153386065	30	18722											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49365180	49365180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP4	NM_199443	exon3	c.C299G	p.A100G	TTCCACGCCTCGG	.	167	19	135	0	.	660	C	49365180	G	C	49365180	3	2	145	1	0	0	0	0	1	0	0	0	17068	1087	38	4	2672	4	USP4	3	49365180	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	4728815	49365180	148657250	31	18723											
BOC	91653	ucsc.edu;bcgsc.ca	37	3	112998756	112998756	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BOC	NM_033254	exon13	c.G2106T	p.S702S	GGTGTCGGGCTAC	.	38	4	38	0	.	157	T	112998756	G	T	112998756	2	4	145	1	0	0	0	0	0	0	0	1	1481	1103	39	1		1	BOC	3	112998756	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	63633576	112998756	85023674	32	18724											
SLC41A3	54946	broad.mit.edu;bcgsc.ca	37	3	125786988	125786988	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC41A3	NM_001008486	exon2	c.C75G	p.P25P	GCTGAGGGGGTGA	.	49	5	30	0	.	90	C	125786988	G	C	125786988	2	2	145	1	0	0	0	0	0	0	0	1	14631	1219	43	4		4	SLC41A3	3	125786988	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	12788232	125786988	72235442	33	18725											
NEK11	79858	broad.mit.edu;bcgsc.ca	37	3	130828741	130828741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NEK11	NM_024800	exon5	c.T431C	p.L144P	TGCTGCTGGGAGT	.	252	19	163	0	.	848	C	130828741	T	C	130828741	3	2	145	1	0	0	0	0	1	0	0	0	10323	1580	55	2	441	2	NEK11	3	130828741	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	5041753	130828741	67193689	34	18726											
PPP2R3A	5523	ucsc.edu;bcgsc.ca	37	3	135745924	135745924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP2R3A	NM_002718	exon3	c.T2246C	p.M749T	ATGAAATGGGGAA	.	30	4	28	0	.	662	C	135745924	T	C	135745924	3	2	145	1	0	0	0	0	1	0	0	0	12388	1464	51	2	2388	2	PPP2R3A	3	135745924	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	4917183	135745924	62276506	35	18727											
CHRD	8646	ucsc.edu;bcgsc.ca	37	3	184101103	184101103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHRD	NM_003741	exon11	c.T1217C	p.L406P	TAGTCCTGCAAAG	.	38	4	31	0	.	93	C	184101103	T	C	184101103	3	2	145	1	0	0	0	0	1	0	0	0	3372	1580	55	2	1259	2	CHRD	3	184101103	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	48355179	184101103	13921327	36	18728											
ATP13A3	79572	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194168612	194168612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP13A3	NM_024524	exon12	c.T1277G	p.I426S	GTGTAGATAAACC	.	194	12	142	0	.	69	C	194168612	A	C	194168612	3	2	145	1	0	0	0	0	1	0	0	0	1125	333	12	5	2487	5	ATP13A3	3	194168612	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	10067509	194168612	3853818	37	18729											
LSG1	55341	ucsc.edu;bcgsc.ca	37	3	194380824	194380824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LSG1	NM_018385	exon6	c.T560C	p.L187P	AACAGGAGTGGGT	.	54	5	49	0	.	90	G	194380824	A	G	194380824	3	3	145	1	0	0	0	0	1	0	0	0	9049	304	11	2	1452	2	LSG1	3	194380824	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	212212	194380824	3641606	38	18730											
PPAT	5471	broad.mit.edu;bcgsc.ca	37	4	57273817	57273817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPAT	NM_002703	exon2	c.A194G	p.K65R	TTTACCTTGTGTG	.	71	6	58	0	.	90	C	57273817	T	C	57273817	3	2	145	1	0	0	0	0	1	0	0	0	12302	1623	56	2	1399	2	PPAT	4	57273817	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		57273817	133880459	39	18731											
USO1	8615	ucsc.edu;bcgsc.ca	37	4	76703966	76703966	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USO1	.	.	.	.	AAATTCTGGCTGG	.	43	4	32	0	.	25	C	76703966	T	C	76703966	2	2	145	1	0	0	0	0	0	0	0	1	17036	1567	55	2		2	USO1	4	76703966	Silent	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	19430149	76703966	114450310	40	18732											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38407124	38407124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EGFLAM	NM_001205301	exon8	c.G1023T	p.R341S	GTCAAGGCTCTTT	.	118	30	90	0	.	187	T	38407124	G	T	38407124	3	4	145	1	0	0	0	0	1	0	0	0	4966	1194	42	3	1067	3	EGFLAM	5	38407124	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10		38407124	142508136	41	18733											
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52233253	52233253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	ITGA1,NS,carcinoma,+1	ITGA1	NM_181501	exon24	c.C2987T	p.P996L	CTTTTCCAATGCC	.	197	73	143	0	.	228	T	52233253	C	T	52233253	3	4	145	1	0	0	0	0	1	0	0	0	7872	594	21	3	3081	3	ITGA1	5	52233253	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	13826129	52233253	128682007	42	18734											
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121767681	121767681	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNCAIP	NM_005460	exon6	c.C1200T	p.C400C	GGAGTGCGTACGC	.	151	37	108	0	.	92	T	121767681	C	T	121767681	2	4	145	1	0	0	0	0	0	0	0	1	14841	776	27	1		1	SNCAIP	5	121767681	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	69534428	121767681	59147579	43	18735											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137284796	137284796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001101800	exon17	c.G1942A	p.G648S	AAGAGCCAAAGCT	.	180	19	150	0	.	.	T	137284796	C	T	137284796	3	4	145	1	0	0	0	0	1	0	0	0	5453	594	21	3	833	3	FAM13B	5	137284796	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	15517115	137284796	43630464	44	18736											
PCDH12	51294	ucsc.edu;bcgsc.ca	37	5	141335557	141335557	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH12	NM_016580	exon1	c.C1860T	p.T620T	CACAATGGTTGTC	.	43	4	36	0	.	93	A	141335557	G	A	141335557	2	1	145	1	0	0	0	0	0	0	0	1	11510	1335	47	3		3	PCDH12	5	141335557	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	4050761	141335557	39579703	45	18737											
BTNL3	10917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180432823	180432823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_197975	exon8	c.A1352C	p.D451A	TGTATGACGAGGA	.	126	30	97	0	.	.	C	180432823	A	C	180432823	3	2	145	1	0	0	0	0	1	0	0	0	1566	275	10	5	1382	5	BTNL3	5	180432823	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	39097266	180432823	482437	46	18738											
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28268801	28268801	+	Missense_Mutation	SNP	G	G	C	rs143874020		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PGBD1	NM_001184743	exon7	c.G1170C	p.W390C	GAGTTGGACCAAA	.	60	24	44	0	G|1.000;C|0.000	94	C	28268801	G	C	28268801	3	2	145	1	0	0	0	0	1	0	0	0	11780	1183	41	4	1192	4	PGBD1	6	28268801	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10		28268801	142846266	47	18739											
CDSN	1041	ucsc.edu;bcgsc.ca	37	6	31084904	31084904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDSN	NM_001264	exon2	c.T488C	p.F163S	CTGCTGAACTGAA	.	34	6	20	0	.	92	G	31084904	A	G	31084904	3	3	145	1	0	0	0	0	1	0	0	0	3179	246	9	2	1105	2	CDSN	6	31084904	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	2816103	31084904	140030163	48	18740											
UBE2J1	51465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90047985	90047985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBE2J1	NM_016021	exon5	c.G367A	p.G123R	CCTCTCCTTTTGT	.	202	11	113	0	.	226	T	90047985	C	T	90047985	3	4	145	1	0	0	0	0	1	0	0	0	16857	690	24	3	605	3	UBE2J1	6	90047985	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	58963081	90047985	81067082	49	18741											
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97247241	97247241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR63	NM_030784	exon2	c.C367A	p.L123I	AAGCTAGGCTGGC	.	55	13	45	0	.	92	T	97247241	G	T	97247241	3	4	145	1	0	0	0	0	1	0	0	0	6704	991	35	3	896	3	GPR63	6	97247241	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	7199256	97247241	73867826	50	18742											
MAN1A1	4121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119511012	119511012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A1	NM_005907	exon10	c.G1363A	p.G455R	TTAGTCCGCTGCT	.	49	13	76	1	.	517	T	119511012	C	T	119511012	3	4	145	1	0	0	0	0	1	0	0	0	9210	661	23	1	614	1	MAN1A1	6	119511012	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	22263771	119511012	51604055	51	18743											
ARG1	383	ucsc.edu;bcgsc.ca	37	6	131902378	131902378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARG1	NM_001244438	exon4	c.T349C	p.S117P	AGCATCTCTGGCC	.	36	4	37	0	.	91	C	131902378	T	C	131902378	3	2	145	1	0	0	0	0	1	0	0	0	857	1551	54	2	339	2	ARG1	6	131902378	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	12391366	131902378	39212689	52	18744											
KATNA1	11104	ucsc.edu;bcgsc.ca	37	6	149922743	149922743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KATNA1	NM_007044	exon7	c.T875C	p.L292P	AACAGAAGACGAA	.	37	4	56	0	.	91	G	149922743	A	G	149922743	3	3	145	1	0	0	0	0	1	0	0	0	7984	72	3	2	620	2	KATNA1	6	149922743	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	18020365	149922743	21192324	53	18745											
C6orf211	79624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151790078	151790078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C6orf211	NM_024573	exon5	c.C1159G	p.Q387E	TTTCATCAGGCTC	.	70	7	83	0	.	90	G	151790078	C	G	151790078	3	3	145	1	0	0	0	0	1	0	0	0	2354	827	29	4	1177	4	C6orf211	6	151790078	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	1867335	151790078	19324989	54	18746											
MAD1L1	8379	ucsc.edu;bcgsc.ca	37	7	2041757	2041757	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAD1L1	NM_003550	exon15	c.1360-1G>A	.	CTGAGCCTGCAAG	.	37	4	29	0	.	1083	T	2041757	C	T	2041757	5	4	145	1	0	0	0	0	0	0	1	0	9147	695	24	3	821	3	MAD1L1	7	2041757	Splice_Site	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		2041757	157096906	55	18747											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11485864	11485864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THSD7A	NM_015204	exon13	c.C2888A	p.A963E	GGTTGTGCATTAT	.	142	54	110	0	.	71	T	11485864	G	T	11485864	3	4	145	1	0	0	0	0	1	0	0	0	15876	1319	46	3	2145	3	THSD7A	7	11485864	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	9444107	11485864	147652799	56	18748											
TAX1BP1	8887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27831697	27831697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TAX1BP1	NM_006024	exon9	c.G1111A	p.V371I	GAAGTTGTCTTTC	.	130	10	88	0	.	153	A	27831697	G	A	27831697	3	1	145	1	0	0	0	0	1	0	0	0	15591	1377	48	3	1141	3	TAX1BP1	7	27831697	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	16345833	27831697	131306966	57	18749											
SFRP4	6424	broad.mit.edu;bcgsc.ca	37	7	37955917	37955917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SFRP4	NM_003014	exon1	c.T223C	p.F75L	GGAAGAAGCGCAG	.	76	6	82	0	.	658	G	37955917	A	G	37955917	3	3	145	1	0	0	0	0	1	0	0	0	14163	72	3	2	841	2	SFRP4	7	37955917	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	10124220	37955917	121182746	58	18750											
EIF4H	7458	broad.mit.edu;bcgsc.ca	37	7	73602087	73602087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EIF4H	NM_022170	exon2	c.G206T	p.S69I	TAAGGAGTGTACG	.	78	6	56	0	.	90	T	73602087	G	T	73602087	3	4	145	1	0	0	0	0	1	0	0	0	5039	1029	36	3	212	3	EIF4H	7	73602087	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	35646170	73602087	85536576	59	18751											
CDK14	5218	ucsc.edu;bcgsc.ca	37	7	90741982	90741982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK14	NM_012395	exon12	c.G1226T	p.W409L	GGCTATGGGAACT	.	42	4	32	0	.	970	T	90741982	G	T	90741982	3	4	145	1	0	0	0	0	1	0	0	0	3130	1357	47	3	1272	3	CDK14	7	90741982	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	17139895	90741982	68396681	60	18752											
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449544	128449544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC136	NM_022742	exon11	c.A1646T	p.K549M	AGGAAAAGTACAA	.	221	61	248	0	.	24	T	128449544	A	T	128449544	3	4	145	1	0	0	0	0	1	0	0	0	2770	72	3	4	1688	4	CCDC136	7	128449544	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	37707562	128449544	30689119	61	18753											
MTMR7	9108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17198903	17198903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTMR7	NM_004686	exon6	c.A701G	p.D234G	ACGAAGTCACTTC	.	34	12	42	0	.	91	C	17198903	T	C	17198903	3	2	145	1	0	0	0	0	1	0	0	0	9948	1667	58	2	1317	2	MTMR7	8	17198903	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		17198903	129165119	62	18754											
SLC18A1	6570	ucsc.edu;bcgsc.ca	37	8	20036702	20036702	+	Missense_Mutation	SNP	C	C	A	rs17215808	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC18A1	NM_001142324	exon4	c.G418T	p.G140W	GAACCCCGACCCG	.	36	4	65	0	C|0.998;T|0.002	92	A	20036702	C	A	20036702	3	1	145	1	0	0	0	0	1	0	0	0	14425	652	23	1	1215	1	SLC18A1	8	20036702	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	2837799	20036702	126327320	63	18755											
FAM160B2	64760	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21959694	21959694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022749	exon15	c.C1860A	p.S620R	ATACAGCCTGAAC	.	29	9	47	0	.	.	A	21959694	C	A	21959694	3	1	145	1	0	0	0	0	1	0	0	0	5471	738	26	3	1717	3	FAM160B2	8	21959694	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	1922992	21959694	124404328	64	18756											
SCARA3	51435	ucsc.edu;bcgsc.ca	37	8	27516828	27516828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCARA3	NM_182826	exon5	c.G1141C	p.V381L	GATGACGTGCGGC	.	31	4	54	0	.	228	C	27516828	G	C	27516828	3	2	145	1	0	0	0	0	1	0	0	0	13879	1145	40	4	1159	4	SCARA3	8	27516828	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	5557134	27516828	118847194	65	18757											
PKHD1L1	93035	broad.mit.edu;bcgsc.ca	37	8	110495217	110495217	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PKHD1L1	NM_177531	exon57	c.G9459A	p.G3153G	TTTAGGGGTGTTT	.	282	13	219	0	.	145	A	110495217	G	A	110495217	2	1	145	1	0	0	0	0	0	0	0	1	11972	1246	43	3		3	PKHD1L1	8	110495217	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	82978389	110495217	35868805	66	18758											
LRRC6	23639	ucsc.edu;bcgsc.ca	37	8	133673830	133673830	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRRC6	NM_012472	exon2	c.T54C	p.C18C	AATGACACAGTCG	.	47	5	29	0	.	92	G	133673830	A	G	133673830	2	3	145	1	0	0	0	0	0	0	0	1	9016	157	6	2		2	LRRC6	8	133673830	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	23178613	133673830	12690192	67	18759											
RHPN1	114822	ucsc.edu;bcgsc.ca	37	8	144459602	144459602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RHPN1	NM_052924	exon4	c.C358A	p.L120M	AAGGAGCTGGACT	.	45	4	33	0	.	67	A	144459602	C	A	144459602	3	1	145	1	0	0	0	0	1	0	0	0	13350	796	28	3	372	3	RHPN1	8	144459602	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	10785772	144459602	1904420	68	18760											
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5742973	5742973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1432	NM_001206557	exon9	c.T1006G	p.F336V	AGTGTTTTTGGAG	.	328	115	253	0	.	90	G	5742973	T	G	5742973	3	3	145	1	0	0	0	0	1	0	0	0	8233	1841	64	5	799	5	KIAA1432	9	5742973	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		5742973	135470458	69	18761											
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6793123	6793123	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDM4C	NM_001146696	exon2	c.T201C	p.G67G	TGCGGGTCTTGCA	.	74	27	37	0	.	228	C	6793123	T	C	6793123	2	2	145	1	0	0	0	0	0	0	0	1	8130	1654	58	2		2	KDM4C	9	6793123	Silent	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	1050150	6793123	134420308	70	18762											
PRUNE2	158471	broad.mit.edu;bcgsc.ca	37	9	79325022	79325022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRUNE2	NM_015225	exon8	c.C2168A	p.P723H	AGTTCAGGCTGAC	.	121	10	115	0	.	157	T	79325022	G	T	79325022	3	4	145	1	0	0	0	0	1	0	0	0	12641	1000	35	3	7146	3	PRUNE2	9	79325022	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	72531899	79325022	61888409	71	18763											
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104315030	104315030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RNF20	NM_019592	exon13	c.A1896T	p.E632D	GATTGAACTCAAG	.	222	56	180	0	.	231	T	104315030	A	T	104315030	3	4	145	1	0	0	0	0	1	0	0	0	13473	40	2	4	1942	4	RNF20	9	104315030	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	24990008	104315030	36898401	72	18764											
CDK5RAP2	55755	ucsc.edu;bcgsc.ca	37	9	123308036	123308036	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK5RAP2	NM_018249	exon5	c.G339T	p.L113L	CCGCTTCAGACTT	.	45	5	33	0	.	229	A	123308036	C	A	123308036	2	1	145	1	0	0	0	0	0	0	0	1	3146	813	29	3		3	CDK5RAP2	9	123308036	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	18993006	123308036	17905395	73	18765											
FBXW5	54461	ucsc.edu;bcgsc.ca	37	9	139837928	139837928	+	Missense_Mutation	SNP	C	C	T	rs141420875		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXW5	NM_018998	exon3	c.G224A	p.R75Q	TACAGCCGCTGGA	.	48	4	60	1	C|1.000;T|0.000	226	T	139837928	C	T	139837928	3	4	145	1	0	0	0	0	1	0	0	0	5768	652	23	1	1504	1	FBXW5	9	139837928	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	16529892	139837928	1375503	74	18766											
PITRM1	10531	ucsc.edu;bcgsc.ca	37	10	3186531	3186531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PITRM1	NM_001242307	exon22	c.G2488T	p.D830Y	GGGCATCTCCACC	.	34	4	34	0	.	91	A	3186531	C	A	3186531	3	1	145	1	0	0	0	0	1	0	0	0	11953	913	32	3	652	3	PITRM1	10	3186531	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		3186531	132348216	75	18767											
BMS1	9790	ucsc.edu;bcgsc.ca	37	10	43279928	43279928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BMS1	NM_014753	exon2	c.T86C	p.L29P	AGGATCTCCAGCT	.	60	5	54	0	.	93	C	43279928	T	C	43279928	3	2	145	1	0	0	0	0	1	0	0	0	1472	1551	54	2	88	2	BMS1	10	43279928	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	40093397	43279928	92254819	76	18768											
DYDC1	143241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82098869	82098869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYDC1	NM_001269053	exon5	c.A383G	p.D128G	AGAATATCTTCAT	.	288	28	151	0	.	68	C	82098869	T	C	82098869	3	2	145	1	0	0	0	0	1	0	0	0	4838	1435	50	2	162	2	DYDC1	10	82098869	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	38818941	82098869	53435878	77	18769											
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93609319	93609319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNKS2	NM_025235	exon20	c.G2662A	p.E888K	GGACTTGAGCACC	.	147	47	122	0	.	541	A	93609319	G	A	93609319	3	1	145	1	0	0	0	0	1	0	0	0	16318	1291	45	3	2740	3	TNKS2	10	93609319	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	11510450	93609319	41925428	78	18770											
CHUK	1147	ucsc.edu;bcgsc.ca	37	10	101982676	101982676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHUK	NM_001278	exon3	c.C262A	p.H88N	CATCATGAATCAA	.	31	4	45	0	.	961	T	101982676	G	T	101982676	3	4	145	1	0	0	0	0	1	0	0	0	3416	1290	45	3	2051	3	CHUK	10	101982676	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	8373357	101982676	33552071	79	18771											
C10orf76	79591	ucsc.edu;bcgsc.ca	37	10	103789456	103789456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C10orf76	NM_024541	exon5	c.C353T	p.T118I	CCAGAGGTAGACT	.	32	4	37	0	.	90	A	103789456	G	A	103789456	3	1	145	1	0	0	0	0	1	0	0	0	1616	1261	44	3	1804	3	C10orf76	10	103789456	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	1806780	103789456	31745291	80	18772											
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118896079	118896079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VAX1	NM_199131	exon2	c.G333C	p.Q111H	ATAGAGCTGCTCC	.	46	31	48	0	.	92	G	118896079	C	G	118896079	3	3	145	1	0	0	0	0	1	0	0	0	17131	796	28	4	819	4	VAX1	10	118896079	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	15106623	118896079	16638668	81	18773											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62293785	62293785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	AHNAK,NS,carcinoma,+2	AHNAK	NM_001620	exon5	c.A8104G	p.I2702V	CTTTGATATTCAT	.	212	11	189	0	.	109	C	62293785	T	C	62293785	3	2	145	1	0	0	0	0	1	0	0	0	414	1406	49	2	9688	2	AHNAK	11	62293785	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		62293785	72712731	82	18774											
NXF1	10482	ucsc.edu;bcgsc.ca	37	11	62571039	62571039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NXF1	NM_006362	exon3	c.C221A	p.P74H	GTATAGGGGTTGC	.	42	4	37	0	.	228	T	62571039	G	T	62571039	3	4	145	1	0	0	0	0	1	0	0	0	10782	1232	43	3	1769	3	NXF1	11	62571039	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	277254	62571039	72435477	83	18775											
PLCB3	5331	ucsc.edu;bcgsc.ca	37	11	64031579	64031579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLCB3	NM_000932	exon22	c.A2647G	p.S883G	GGGGAGAGTGAGG	.	50	5	37	0	.	228	G	64031579	A	G	64031579	3	3	145	1	0	0	0	0	1	0	0	0	12029	304	11	2	2733	2	PLCB3	11	64031579	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	1460540	64031579	70974937	84	18776											
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75110602	75110602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPS3	NM_001256802	exon1	c.A11G	p.Q4R	CAGTGCAAATATC	.	113	31	110	0	.	90	G	75110602	A	G	75110602	3	3	145	1	0	0	0	0	1	0	0	0	13643	130	5	2	13	2	RPS3	11	75110602	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	11079023	75110602	59895914	85	18777											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92531317	92531317	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAT3	NM_001008781	exon9	c.T5138A	p.I1713N	ATGGGATCTTTAC	.	149	56	104	0	.	73	A	92531317	T	A	92531317	3	1	145	1	0	0	0	0	1	0	0	0	5691	1435	50	4	5172	4	FAT3	11	92531317	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	17420715	92531317	42475199	86	18778											
C11orf57	55216	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111953659	111953659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C11orf57	NM_001082969	exon6	c.C845T	p.T282I	TAGCTACAGATGA	.	49	14	41	0	.	155	T	111953659	C	T	111953659	3	4	145	1	0	0	0	0	1	0	0	0	1650	478	17	3	863	3	C11orf57	11	111953659	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	19422342	111953659	23052857	87	18779											
NCAM1	4684	broad.mit.edu;bcgsc.ca	37	11	113130930	113130930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCAM1	NM_001242607	exon18	c.G2094T	p.K698N	GCTGAAGTCCCTG	.	92	7	74	0	.	23	T	113130930	G	T	113130930	3	4	145	1	0	0	0	0	1	0	0	0	10202	1020	36	3	2196	3	NCAM1	11	113130930	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	1177271	113130930	21875586	88	18780											
SCN3B	55800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123513234	123513234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCN3B	NM_018400	exon3	c.T365A	p.V122E	CGGGACACATTGC	.	71	18	54	0	.	156	T	123513234	A	T	123513234	3	4	145	1	0	0	0	0	1	0	0	0	13919	159	6	4	294	4	SCN3B	11	123513234	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	10382304	123513234	11493282	89	18781											
OR8D1	283159	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124180637	124180637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR8D1	NM_001002917	exon1	c.C26A	p.A9E	TGAGCTGCCATAG	.	31	7	29	0	.	71	T	124180637	G	T	124180637	3	4	145	1	0	0	0	0	1	0	0	0	11231	1319	46	3	903	3	OR8D1	11	124180637	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	667403	124180637	10825879	90	18782											
ARHGAP32	9743	ucsc.edu;bcgsc.ca	37	11	129034323	129034323	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGAP32	NM_001142685	exon3	c.117-1G>T	.	ATCTTCCTAGAGA	.	44	4	28	0	.	231	A	129034323	C	A	129034323	5	1	145	1	0	0	0	0	0	0	1	0	881	695	24	3	6231	3	ARHGAP32	11	129034323	Splice_Site	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	4853686	129034323	5972193	91	18783											
B4GALNT3	283358	ucsc.edu;bcgsc.ca	37	12	645454	645454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	B4GALNT3	NM_173593	exon3	c.T344C	p.L115P	CCTGGCTCTCAGA	.	56	5	44	0	.	92	C	645454	T	C	645454	3	2	145	1	0	0	0	0	1	0	0	0	1268	1551	54	2	354	2	B4GALNT3	12	645454	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		645454	133206441	92	18784											
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7522105	7522105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD163L1	NM_174941	exon15	c.T3887C	p.L1296P	TCCCTCAGGGCAG	.	27	7	35	0	.	100	G	7522105	A	G	7522105	3	3	145	1	0	0	0	0	1	0	0	0	2968	188	7	2	494	2	CD163L1	12	7522105	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	6876651	7522105	126329790	93	18785											
LETMD1	25875	ucsc.edu;bcgsc.ca	37	12	51449625	51449625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LETMD1	NM_001243689	exon5	c.T520C	p.F174L	TACCTGTTTCCCA	.	52	5	54	0	.	90	C	51449625	T	C	51449625	3	2	145	1	0	0	0	0	1	0	0	0	8736	1725	60	2	499	2	LETMD1	12	51449625	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	43927520	51449625	82402270	94	18786											
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56993854	56993854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ2A	NM_013449	exon25	c.G4925T	p.R1642L	CAGACACGAATGC	.	73	29	90	0	.	22	A	56993854	C	A	56993854	3	1	145	1	0	0	0	0	1	0	0	0	1331	536	19	1	812	1	BAZ2A	12	56993854	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	5544229	56993854	76858041	95	18787											
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93804590	93804590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBE2N	NM_003348	exon3	c.G338C	p.S113T	GGAGCACTTAACA	.	201	24	147	0	.	659	G	93804590	C	G	93804590	3	3	145	1	0	0	0	0	1	0	0	0	16863	565	20	4	128	4	UBE2N	12	93804590	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	36810736	93804590	40047305	96	18788											
PLXNC1	10154	ucsc.edu;bcgsc.ca	37	12	94613937	94613937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLXNC1	NM_005761	exon6	c.A1700G	p.K567R	CCTACAAAGGTAT	.	42	4	45	0	.	92	G	94613937	A	G	94613937	3	3	145	1	0	0	0	0	1	0	0	0	12126	14	1	2	1722	2	PLXNC1	12	94613937	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	809347	94613937	39237958	97	18789											
APAF1	317	ucsc.edu;bcgsc.ca	37	12	99061422	99061422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APAF1	NM_181868	exon10	c.G1494T	p.K498N	GCACAAGGTAAGA	.	44	4	41	0	.	229	T	99061422	G	T	99061422	3	4	145	1	0	0	0	0	1	0	0	0	755	1014	35	3	1528	3	APAF1	12	99061422	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	4447485	99061422	34790473	98	18790											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101381373	101381373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANO4	NM_178826	exon7	c.T554A	p.L185Q	TGAGGCTGGACAA	.	39	17	47	0	.	96	A	101381373	T	A	101381373	3	1	145	1	0	0	0	0	1	0	0	0	699	1580	55	4	576	4	ANO4	12	101381373	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	2319951	101381373	32470522	99	18791											
ERP29	10961	ucsc.edu;bcgsc.ca	37	12	112460309	112460309	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ERP29	NM_006817	exon3	c.G639T	p.G213G	CCAAGGGGAGGAC	.	36	4	41	0	.	90	T	112460309	G	T	112460309	2	4	145	1	0	0	0	0	0	0	0	1	5242	1219	43	3		3	ERP29	12	112460309	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	11078936	112460309	21391586	100	18792											
MLXIP	22877	ucsc.edu;bcgsc.ca	37	12	122622025	122622025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MLXIP	NM_014938	exon12	c.G2042T	p.C681F	GGGACTGCCCAAA	.	42	4	40	0	.	92	T	122622025	G	T	122622025	3	4	145	1	0	0	0	0	1	0	0	0	9636	1319	46	3	2088	3	MLXIP	12	122622025	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	10161716	122622025	11229870	101	18793											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124821719	124821753	+	Frame_Shift_Del	DEL	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCOR2	NM_006312	exon40	c.5688_5695del	p.1896_1899del	AGGTGGAGGTGGA	.	134	16	303	0	.	229	-	124821753	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	-	124821719	7	5	145	1	0	1	0	1	0	0	0	0	10236	304	11	0	1889	0	NCOR2	12	124821719	Frame_Shift_Del	DEL	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	TCGA-G3-A25Y-01A-11D-A16V-10	2199694	124821719	9030176	102	18794											
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	25466801	25466801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CENPJ	NM_018451	exon10	c.G3196T	p.E1066X	TCTTCTCCACCTC	.	176	45	117	0	.	92	A	25466801	C	A	25466801	4	1	145	1	0	0	0	0	0	1	0	0	3234	864	30	3	852	3	CENPJ	13	25466801	Nonsense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		25466801	89703077	103	18795											
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37678951	37678951	+	Missense_Mutation	SNP	C	C	T	rs201851808		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSNK1A1L	NM_145203	exon1	c.G443A	p.R148H	CAGTGACGCCCAG	.	260	88	208	0	C|0.999;T|0.000	396	T	37678951	C	T	37678951	3	4	145	1	0	0	0	0	1	0	0	0	3951	536	19	1	574	1	CSNK1A1L	13	37678951	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	12212150	37678951	77490927	104	18796											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953728	48953728	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RB1	NM_000321	exon14	c.1333-2A>G	.	GTTTGTAGCGATA	.	143	48	109	0	.	3784	G	48953728	A	G	48953728	5	3	145	1	0	0	0	0	0	0	1	0	13098	434	15	2	1385	2	RB1	13	48953728	Splice_Site	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	11274777	48953728	66216150	105	18797											
PCDH8	5100	ucsc.edu;bcgsc.ca	37	13	53422154	53422154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH8	NM_032949	exon1	c.A418G	p.I140V	CCGGGATCTGGGC	.	43	4	58	0	.	153	C	53422154	T	C	53422154	3	2	145	1	0	0	0	0	1	0	0	0	11517	1435	50	2	2806	2	PCDH8	13	53422154	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	4468426	53422154	61747724	106	18798											
TMEM55B	90809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20926842	20926842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMEM55B	NM_001100814	exon7	c.C731T	p.A244V	CGCCGTGCATGCT	.	43	16	44	0	.	90	A	20926842	G	A	20926842	3	1	145	1	0	0	0	0	1	0	0	0	16179	1319	46	3	127	3	TMEM55B	14	20926842	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10		20926842	86422698	107	18799											
PSME2	5721	ucsc.edu;bcgsc.ca	37	14	24615416	24615416	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSME2	NM_002818	exon3	c.81+1G>T	.	GACTTACCTCCTG	.	42	4	54	0	.	90	A	24615416	C	A	24615416	5	1	145	1	0	0	0	0	0	0	1	0	12707	521	18	3	677	3	PSME2	14	24615416	Splice_Site	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	3688574	24615416	82734124	108	18800											
BAZ1A	11177	ucsc.edu;bcgsc.ca	37	14	35227971	35227971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ1A	NM_013448	exon25	c.T4325C	p.V1442A	TCTACAACAAGTT	.	50	4	34	0	.	291	G	35227971	A	G	35227971	3	3	145	1	0	0	0	0	1	0	0	0	1329	43	2	2	357	2	BAZ1A	14	35227971	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	10612555	35227971	72121569	109	18801											
SEC23A	10484	ucsc.edu;bcgsc.ca	37	14	39555106	39555106	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEC23A	NM_006364	exon7	c.T688C	p.L230L	GTTGTAAGAATCT	.	38	4	35	0	.	95	G	39555106	A	G	39555106	2	3	145	1	0	0	0	0	0	0	0	1	13991	69	3	2		2	SEC23A	14	39555106	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	4327135	39555106	67794434	110	18802											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356583	42356583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRFN5	NM_152447	exon3	c.G755A	p.R252K	GGTTGAGGCGTCT	.	84	9	65	0	.	97	A	42356583	G	A	42356583	3	1	145	1	0	0	0	0	1	0	0	0	8941	1000	35	3	757	3	LRFN5	14	42356583	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	2801477	42356583	64992957	111	18803											
TSHR	7253	ucsc.edu;bcgsc.ca	37	14	81609800	81609800	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TSHR	NM_000369	exon10	c.C1398T	p.Y466Y	GATGTACCTGCTC	.	39	4	50	0	.	1650	T	81609800	C	T	81609800	2	4	145	1	0	0	0	0	0	0	0	1	16619	518	18	3		3	TSHR	14	81609800	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	39253217	81609800	25739740	112	18804											
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39876571	39876571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THBS1	NM_003246	exon6	c.A974T	p.Y325F	TTCAGTACAGAAA	.	42	4	57	0	.	653	T	39876571	A	T	39876571	3	4	145	1	0	0	0	0	1	0	0	0	15850	391	14	4	992	4	THBS1	15	39876571	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10		39876571	62654821	113	18805											
RAD51	5888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40993273	40993273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RAD51	NM_001164270	exon3	c.A99G	p.I33M	TGGCATAAATGCC	.	51	6	62	0	.	563	G	40993273	A	G	40993273	3	3	145	1	0	0	0	0	1	0	0	0	12985	352	13	2	105	2	RAD51	15	40993273	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	1116702	40993273	61538119	114	18806											
TRPM7	54822	ucsc.edu;bcgsc.ca	37	15	50978728	50978728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPM7	NM_017672	exon1	c.G3T	p.M1I	CAGTACCATTCTC	.	47	4	53	0	.	392	A	50978728	C	A	50978728	3	1	145	1	0	0	0	0	1	0	0	0	16588	608	21	3	5750	3	TRPM7	15	50978728	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	9985455	50978728	51552664	115	18807											
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101929687	101929687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCSK6	.	.	.	.	GCCAAGGCGATGA	.	59	11	41	0	.	46	T	101929687	G	T	101929687	3	4	145	1	0	0	0	0	1	0	0	0	11604	1203	42	3	2152	3	PCSK6	15	101929687	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	50950959	101929687	601705	116	18808											
RGS11	8786	ucsc.edu;bcgsc.ca	37	16	321559	321559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RGS11	NM_183337	exon10	c.G667T	p.A223S	AATCTGCACTCTT	.	39	4	47	0	.	227	A	321559	C	A	321559	3	1	145	1	0	0	0	0	1	0	0	0	13294	710	25	3	768	3	RGS11	16	321559	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		321559	90033194	117	18809											
ADCY9	115	ucsc.edu;bcgsc.ca	37	16	4042259	4042259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADCY9	NM_001116	exon5	c.A2095G	p.K699E	TTCCCTTCTCCTG	.	44	4	68	0	.	139	C	4042259	T	C	4042259	3	2	145	1	0	0	0	0	1	0	0	0	301	1792	62	2	1994	2	ADCY9	16	4042259	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	3720700	4042259	86312494	118	18810											
GDE1	51573	ucsc.edu;bcgsc.ca	37	16	19533181	19533181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GDE1	NM_016641	exon1	c.G106A	p.G36S	GGCTGCCGGTGAG	.	32	4	39	0	.	70	T	19533181	C	T	19533181	3	4	145	1	0	0	0	0	1	0	0	0	6310	652	23	1	913	1	GDE1	16	19533181	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	15490922	19533181	70821572	119	18811											
ANKS4B	257629	ucsc.edu;bcgsc.ca	37	16	21261131	21261131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKS4B	NM_145865	exon2	c.T244C	p.S82P	TGCGTCTCATTCC	.	35	4	65	0	.	92	C	21261131	T	C	21261131	3	2	145	1	0	0	0	0	1	0	0	0	691	1551	54	2	250	2	ANKS4B	16	21261131	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	1727950	21261131	69093622	120	18812											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27460454	27460454	+	Silent	SNP	G	G	T	rs56002407	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IL21R	NM_181079	exon10	c.G1533T	p.T511T	GGACACGTTTGAC	.	22	11	48	0	G|0.999;A|0.001	660	T	27460454	G	T	27460454	2	4	145	1	0	0	0	0	0	0	0	1	7671	1132	40	1		1	IL21R	16	27460454	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	6199323	27460454	62894299	121	18813											
SRCAP	10847	ucsc.edu;bcgsc.ca	37	16	30750595	30750595	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SRCAP	NM_006662	exon34	c.A9234G	p.G3078G	GCGAGGACGGAAG	.	45	5	52	1	.	94	G	30750595	A	G	30750595	2	3	145	1	0	0	0	0	0	0	0	1	15134	262	10	2		2	SRCAP	16	30750595	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	3290141	30750595	59604158	122	18814											
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58706093	58706093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC38A7	NM_018231	exon9	c.C938A	p.S313Y	GGATAGGACAGGA	.	52	26	80	0	.	69	T	58706093	G	T	58706093	3	4	145	1	0	0	0	0	1	0	0	0	14609	1174	41	3	466	3	SLC38A7	16	58706093	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	27955498	58706093	31648660	123	18815											
CES3	23491	ucsc.edu;bcgsc.ca	37	16	66998383	66998383	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CES3	NM_024922	exon5	c.A684G	p.G228G	TGGTGGATCTGCC	.	38	4	64	0	.	517	G	66998383	A	G	66998383	2	3	145	1	0	0	0	0	0	0	0	1	3271	320	12	2		2	CES3	16	66998383	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	8292290	66998383	23356370	124	18816											
PRMT7	54496	ucsc.edu;bcgsc.ca	37	16	68373424	68373424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRMT7	NM_019023	exon8	c.C704A	p.P235Q	TGTCACCAGCCGA	.	19	4	29	0	.	90	A	68373424	C	A	68373424	3	1	145	1	0	0	0	0	1	0	0	0	12541	594	21	3	726	3	PRMT7	16	68373424	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	1375041	68373424	21981329	125	18817											
HYDIN	54768	ucsc.edu;bcgsc.ca	37	16	70884538	70884538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HYDIN	NM_001270974	exon74	c.T12464C	p.F4155S	GGTGTGAAGAAAA	.	41	4	43	0	.	92	G	70884538	A	G	70884538	3	3	145	1	0	0	0	0	1	0	0	0	7467	246	9	2	2953	2	HYDIN	16	70884538	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	2511114	70884538	19470215	126	18818											
SERPINF1	5176	ucsc.edu;bcgsc.ca	37	17	1675351	1675351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SERPINF1	NM_002615	exon5	c.G625T	p.G209C	CTTCTCGGTGTGG	.	33	4	25	0	.	227	T	1675351	G	T	1675351	3	4	145	1	0	0	0	0	1	0	0	0	14114	1116	39	1	639	1	SERPINF1	17	1675351	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10		1675351	79519859	127	18819											
PLD2	5338	ucsc.edu;bcgsc.ca	37	17	4714131	4714131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLD2	NM_001243108	exon10	c.G895T	p.A299S	CGGCAGGCACGGT	.	39	4	47	0	.	291	T	4714131	G	T	4714131	3	4	145	1	0	0	0	0	1	0	0	0	12046	1203	42	3	929	3	PLD2	17	4714131	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	3038780	4714131	76481079	128	18820											
TRPV2	51393	ucsc.edu;bcgsc.ca	37	17	16335314	16335314	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPV2	NM_016113	exon12	c.C1689A	p.P563P	GCGCCCCGAAGCT	.	36	4	64	0	.	91	A	16335314	C	A	16335314	2	1	145	1	0	0	0	0	0	0	0	1	16593	639	23	1		1	TRPV2	17	16335314	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	11621183	16335314	64859896	129	18821											
ZNHIT3	9326	ucsc.edu;bcgsc.ca	37	17	34848721	34848721	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNHIT3	NM_004773	exon3	c.C183T	p.T61T	CAAAACCGTAAAG	.	54	5	52	0	.	90	T	34848721	C	T	34848721	2	4	145	1	0	0	0	0	0	0	0	1	18205	639	23	1		1	ZNHIT3	17	34848721	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	18513407	34848721	46346489	130	18822											
GRB7	2886	ucsc.edu;bcgsc.ca	37	17	37902252	37902252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRB7	NM_001242442	exon13	c.G1426T	p.G476C	GTAGACGGGTAAG	.	38	4	44	0	.	848	T	37902252	G	T	37902252	3	4	145	1	0	0	0	0	1	0	0	0	6759	1130	39	1	1403	1	GRB7	17	37902252	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	3053531	37902252	43292958	131	18823											
TMEM106A	113277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41368750	41368750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_145041	exon7	c.A605C	p.E202A	GGGATGAAAACAC	.	151	19	104	0	.	.	C	41368750	A	C	41368750	3	2	145	1	0	0	0	0	1	0	0	0	16017	246	9	5	623	5	TMEM106A	17	41368750	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	3466498	41368750	39826460	132	18824											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48629417	48629417	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPATA20	NM_022827	exon14	c.G1833A	p.A611A	GAGTGCGTGGCTC	.	121	20	108	0	.	90	A	48629417	G	A	48629417	2	1	145	1	0	0	0	0	0	0	0	1	15005	1132	40	1		1	SPATA20	17	48629417	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	7260667	48629417	32565793	133	18825											
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61957832	61957832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GH2	NM_002059	exon5	c.C503A	p.S168Y	CTGTAGGACTGAT	.	241	48	216	0	.	93	T	61957832	G	T	61957832	3	4	145	1	0	0	0	0	1	0	0	0	6368	1174	41	3	242	3	GH2	17	61957832	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	13328415	61957832	19237378	134	18826											
AXIN2	8313	broad.mit.edu;bcgsc.ca	37	17	63526129	63526129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AXIN2	NM_004655	exon11	c.G2497T	p.G833C	TCCGGCCTTCATA	.	57	5	62	0	.	658	A	63526129	C	A	63526129	3	1	145	1	0	0	0	0	1	0	0	0	1237	681	24	3	38	3	AXIN2	17	63526129	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	1568297	63526129	17669081	135	18827											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74019605	74019605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EVPL	NM_001988	exon3	c.C329A	p.P110Q	GCCTGCGGGTGCT	.	68	23	65	0	.	93	T	74019605	G	T	74019605	3	4	145	1	0	0	0	0	1	0	0	0	5292	1116	39	1	5852	1	EVPL	17	74019605	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	10493476	74019605	7175605	136	18828											
GATA6	2627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19780725	19780725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GATA6	NM_005257	exon7	c.C1727T	p.S576L	TCGCCTCGCCGGC	.	45	12	41	0	.	514	T	19780725	C	T	19780725	3	4	145	1	0	0	0	0	1	0	0	0	6258	893	31	1	1749	1	GATA6	18	19780725	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		19780725	58296523	137	18829											
ATP8B1	5205	ucsc.edu;bcgsc.ca	37	18	55329818	55329818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP8B1	NM_005603	exon21	c.A2315G	p.Q772R	TTCCTCTGGTTTT	.	41	4	28	0	.	587	C	55329818	T	C	55329818	3	2	145	1	0	0	0	0	1	0	0	0	1194	1580	55	2	1472	2	ATP8B1	18	55329818	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	35549093	55329818	22747430	138	18830											
KIAA1468	57614	broad.mit.edu;bcgsc.ca	37	18	59942653	59942653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1468	NM_020854	exon22	c.G2914A	p.G972S	TGGTATGGTGTTG	.	124	14	114	0	.	158	A	59942653	G	A	59942653	3	1	145	1	0	0	0	0	1	0	0	0	8236	1348	47	3	3000	3	KIAA1468	18	59942653	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	4612835	59942653	18134595	139	18831											
KDSR	2531	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61018193	61018193	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDSR	NM_002035	exon6	c.A537C	p.G179G	GAATAATCCCAAC	.	54	8	57	0	.	227	G	61018193	T	G	61018193	2	3	145	1	0	0	0	0	0	0	0	1	8140	1422	50	5		5	KDSR	18	61018193	Silent	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	1075540	61018193	17059055	140	18832											
TYK2	7297	ucsc.edu;bcgsc.ca	37	19	10476467	10476467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TYK2	NM_003331	exon7	c.A737G	p.Q246R	CCCGGCTGGAAGT	.	51	4	55	1	.	1009	C	10476467	T	C	10476467	3	2	145	1	0	0	0	0	1	0	0	0	16807	1580	55	2	2902	2	TYK2	19	10476467	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		10476467	48652516	141	18833											
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11339690	11339690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DOCK6	NM_020812	exon23	c.C2740T	p.L914L	ACTGCAGAGCCAG	.	37	15	51	0	.	93	A	11339690	G	A	11339690	2	1	145	1	0	0	0	0	0	0	0	1	4691	933	33	3		3	DOCK6	19	11339690	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	863223	11339690	47789293	142	18834											
ZNF536	9745	ucsc.edu;bcgsc.ca	37	19	31039499	31039499	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF536	NM_014717	exon4	c.G2973T	p.S991S	CTCCTCGGTAACT	.	37	4	38	0	.	144	T	31039499	G	T	31039499	2	4	145	1	0	0	0	0	0	0	0	1	17971	1103	39	1		1	ZNF536	19	31039499	Silent	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	19699809	31039499	28089484	143	18835											
GPI	2821	ucsc.edu;bcgsc.ca	37	19	34857692	34857692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPI	NM_001184722	exon4	c.A335G	p.K112R	AGGCCAAGTCCAG	.	39	4	31	0	.	228	G	34857692	A	G	34857692	3	3	145	1	0	0	0	0	1	0	0	0	6611	72	3	2	349	2	GPI	19	34857692	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	3818193	34857692	24271291	144	18836											
ECH1	1891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39322023	39322023	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ECH1	NM_001398	exon2	c.T186C	p.S62S	CTGCGCAGACGTC	.	33	12	27	0	.	91	G	39322023	A	G	39322023	2	3	145	1	0	0	0	0	0	0	0	1	4892	175	7	2		2	ECH1	19	39322023	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	4464331	39322023	19806960	145	18837											
LRFN1	57622	ucsc.edu;bcgsc.ca	37	19	39804874	39804874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRFN1	NM_020862	exon1	c.T1103C	p.F368S	CAAGTGAAGGTGC	.	21	4	34	0	.	70	G	39804874	A	G	39804874	3	3	145	1	0	0	0	0	1	0	0	0	8937	246	9	2	1220	2	LRFN1	19	39804874	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	482851	39804874	19324109	146	18838											
AKT2	208	ucsc.edu;bcgsc.ca	37	19	40741863	40741863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AKT2	NM_001626	exon11	c.C1109A	p.P370Q	GTGCGCGGGAAGC	.	43	5	40	0	.	978	T	40741863	G	T	40741863	3	4	145	1	0	0	0	0	1	0	0	0	480	1116	39	1	352	1	AKT2	19	40741863	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	936989	40741863	18387120	147	18839											
AXL	558	ucsc.edu;bcgsc.ca	37	19	41726725	41726725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AXL	NM_021913	exon2	c.G270T	p.E90D	GGGTGAGGATGAA	.	44	4	32	0	.	1403	T	41726725	G	T	41726725	3	4	145	1	0	0	0	0	1	0	0	0	1238	991	35	3	276	3	AXL	19	41726725	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	984862	41726725	17402258	148	18840											
PSG8	440533	ucsc.edu;bcgsc.ca	37	19	43262154	43262154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSG8	NM_001130167	exon3	c.C709A	p.P237T	ACTCACGGAGGAG	.	37	5	42	0	.	90	T	43262154	G	T	43262154	3	4	145	1	0	0	0	0	1	0	0	0	12661	1130	39	1	604	1	PSG8	19	43262154	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	1535429	43262154	15866829	149	18841											
IRGQ	126298	ucsc.edu;bcgsc.ca	37	19	44097315	44097315	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IRGQ	NM_001007561	exon3	c.G735A	p.L245L	AGGATCCAATCCA	.	24	4	51	0	.	92	T	44097315	C	T	44097315	2	4	145	1	0	0	0	0	0	0	0	1	7839	593	21	3		3	IRGQ	19	44097315	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	835161	44097315	15031668	150	18842											
QPCTL	54814	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46202122	46202122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	QPCTL	NM_017659	exon5	c.C850T	p.R284C	TTCCCTCGCACGG	.	33	8	40	0	.	91	T	46202122	C	T	46202122	3	4	145	1	0	0	0	0	1	0	0	0	12875	884	31	1	868	1	QPCTL	19	46202122	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	2104807	46202122	12926861	151	18843											
SIGLEC8	27181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51957481	51957481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SIGLEC8	NM_014442	exon6	c.G1237T	p.A413S	GAGAGGCCGAGCC	.	40	16	45	0	.	94	A	51957481	C	A	51957481	3	1	145	1	0	0	0	0	1	0	0	0	14314	739	26	3	270	3	SIGLEC8	19	51957481	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	5755359	51957481	7171502	152	18844											
ZNF132	7691	ucsc.edu;bcgsc.ca	37	19	58945522	58945522	+	Missense_Mutation	SNP	G	G	T	rs200662557	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF132	NM_003433	exon3	c.C1289A	p.P430Q	TCATACGGTCTTT	.	48	4	45	0	G|0.999;A|0.000	92	T	58945522	G	T	58945522	3	4	145	1	0	0	0	0	1	0	0	0	17719	1116	39	1	835	1	ZNF132	19	58945522	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	6988041	58945522	183461	153	18845											
PDYN	5173	ucsc.edu;bcgsc.ca	37	20	1963617	1963617	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDYN	NM_001190898	exon3	c.A114G	p.K38K	GATAGGTTTGGGA	.	38	4	30	0	.	92	C	1963617	T	C	1963617	2	2	145	1	0	0	0	0	0	0	0	1	11699	1722	60	2		2	PDYN	20	1963617	Silent	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10		1963617	61061903	154	18846											
SNRPB	6628	ucsc.edu;bcgsc.ca	37	20	2443362	2443362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNRPB	NM_003091	exon6	c.C605A	p.P202Q	CCCATTGGGGGAC	.	41	4	40	0	.	227	T	2443362	G	T	2443362	3	4	145	1	0	0	0	0	1	0	0	0	14861	1348	47	3	140	3	SNRPB	20	2443362	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	479745	2443362	60582158	155	18847											
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31022742	31022752	+	Frame_Shift_Del	DEL	CTAGGAGATGC	CTAGGAGATGC	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	CTAGGAGATGC	CTAGGAGATGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ASXL1	NM_015338	exon12	c.2227_2237del	p.743_746del	GATGGGCTAGGAG	.	84	7	76	0	.	2057	-	31022752	CTAGGAGATGC	-	31022742	7	5	145	1	0	1	0	1	0	0	0	0	1066	796	28	0	2283	0	ASXL1	20	31022742	Frame_Shift_Del	DEL	CTAGGAGATGC	TCGA-G3-A25Y-01A-11D-A16V-10	28579380	31022742	32002778	156	18848											
TNFRSF6B	8771	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62329759	62329759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNFRSF6B	NM_003823	exon3	c.G746A	p.G249D	GGGCGGGCCGCGC	.	32	12	41	2	.	651	A	62329759	G	A	62329759	3	1	145	1	0	0	0	0	1	0	0	0	16295	1203	42	3	756	3	TNFRSF6B	20	62329759	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	31307017	62329759	695761	157	18849											
LIPI	149998	ucsc.edu;bcgsc.ca	37	21	15579152	15579152	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LIPI	NM_198996	exon1	c.T93C	p.V31V	GCACACAACTAGA	.	33	6	21	0	.	70	G	15579152	A	G	15579152	2	3	145	1	0	0	0	0	0	0	0	1	8825	117	5	2		2	LIPI	21	15579152	Silent	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10		15579152	32550743	158	18850											
MORC3	23515	broad.mit.edu;bcgsc.ca	37	21	37741557	37741557	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MORC3	NM_015358	exon15	c.C1891A	p.R631R	TCATCCCGATGCG	.	157	7	132	1	.	92	A	37741557	C	A	37741557	2	1	145	1	0	0	0	0	0	0	0	1	9703	644	23	1		1	MORC3	21	37741557	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	22162405	37741557	10388338	159	18851											
DIP2A	23181	ucsc.edu;bcgsc.ca	37	21	47978170	47978170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DIP2A	NM_015151	exon32	c.G3833T	p.C1278F	GCACGTGCATGGT	.	39	4	45	0	.	24	T	47978170	G	T	47978170	3	4	145	1	0	0	0	0	1	0	0	0	4527	1319	46	3	4072	3	DIP2A	21	47978170	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	10236613	47978170	151725	160	18852											
AP1B1	162	ucsc.edu;bcgsc.ca	37	22	29730278	29730278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AP1B1	NM_001127	exon17	c.T2285C	p.F762S	ATGGCAAAGTCGG	.	27	4	45	0	.	92	G	29730278	A	G	29730278	3	3	145	1	0	0	0	0	1	0	0	0	731	14	1	2	592	2	AP1B1	22	29730278	Missense_Mutation	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10		29730278	21574288	161	18853											
PDGFB	5155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	39621841	39621841	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDGFB	NM_002608	exon6	c.C613T	p.Q205X	GAGTTTGGGGCGT	.	81	13	69	0	.	1270	A	39621841	G	A	39621841	4	1	145	1	0	0	0	0	0	1	0	0	11658	1357	47	3	116	3	PDGFB	22	39621841	Nonsense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	9891563	39621841	11682725	162	18854											
HDAC10	83933	ucsc.edu;bcgsc.ca	37	22	50687294	50687294	+	Missense_Mutation	SNP	G	G	A	rs199648733		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HDAC10	NM_032019	exon9	c.C782T	p.S261L	CCTGCCGAGACCA	.	36	4	33	0	G|0.999;A|0.000	226	A	50687294	G	A	50687294	3	1	145	1	0	0	0	0	1	0	0	0	7005	1059	37	1	1275	1	HDAC10	22	50687294	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	11065453	50687294	617272	163	18855											
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937428	12937428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TLR8	NM_138636	exon2	c.C269G	p.T90S	ATCTCACTAAAAT	.	144	49	112	0	.	629	G	12937428	C	G	12937428	3	3	145	1	0	0	0	0	1	0	0	0	15954	565	20	4	275	4	TLR8	23	12937428	Missense_Mutation	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10		12937428	142333132	164	18856											
KLHL34	257240	ucsc.edu;bcgsc.ca	37	X	21675562	21675562	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KLHL34	NM_153270	exon1	c.G345A	p.L115L	GAGCCCCAGGGCC	.	40	4	41	0	.	131	T	21675562	C	T	21675562	2	4	145	1	0	0	0	0	0	0	0	1	8387	581	21	3		3	KLHL34	23	21675562	Silent	SNP	C	TCGA-G3-A25Y-01A-11D-A16V-10	8738134	21675562	133594998	165	18857											
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120182439	120182439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GLUD2	NM_012084	exon1	c.G901A	p.D301N	TTTAGAGATAAAA	.	379	96	298	0	.	131	A	120182439	G	A	120182439	3	1	145	1	0	0	0	0	1	0	0	0	6477	942	33	3	903	3	GLUD2	23	120182439	Missense_Mutation	SNP	G	TCGA-G3-A25Y-01A-11D-A16V-10	98506877	120182439	35088121	166	18858											
XPNPEP2	7512	broad.mit.edu;bcgsc.ca	37	X	128893154	128893154	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	XPNPEP2	NM_003399	exon15	c.1368-2A>G	.	CTCCATAGGGACG	.	65	5	65	0	.	130	G	128893154	A	G	128893154	5	3	145	1	0	0	0	0	0	0	1	0	17440	434	15	2	1424	2	XPNPEP2	23	128893154	Splice_Site	SNP	A	TCGA-G3-A25Y-01A-11D-A16V-10	8710715	128893154	26377406	167	18859											
ZIC3	7547	ucsc.edu;bcgsc.ca	37	X	136649386	136649386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZIC3	NM_003413	exon1	c.T536C	p.V179A	GGCACGTGGACAA	.	43	6	86	0	.	195	C	136649386	T	C	136649386	3	2	145	1	0	0	0	0	1	0	0	0	17677	1696	59	2	538	2	ZIC3	23	136649386	Missense_Mutation	SNP	T	TCGA-G3-A25Y-01A-11D-A16V-10	7756232	136649386	18621174	168	18860											
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6196807	6196807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD5	NM_015557	exon16	c.T2555A	p.L852H	TTCTTGAGGCGGT	.	53	17	80	0	.	719	T	6196807	A	T	6196807	3	4	146	1	0	0	0	0	1	0	0	0	3328	304	11	4	3413	4	CHD5	1	6196807	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10		6196807	243053814	1	18861											
STIL	6491	ucsc.edu;bcgsc.ca	37	1	47748108	47748108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STIL	NM_003035	exon11	c.G1157T	p.G386V	ATCTTCCCAGAAG	.	40	6	28	0	.	659	A	47748108	C	A	47748108	3	1	146	1	0	0	0	0	1	0	0	0	15281	623	22	3	2737	3	STIL	1	47748108	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	41551301	47748108	201502513	2	18862											
LMO4	8543	ucsc.edu;bcgsc.ca	37	1	87805235	87805235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LMO4	NM_006769	exon3	c.G253T	p.G85C	AATAGCGGTGCTT	.	57	5	51	0	.	226	T	87805235	G	T	87805235	3	4	146	1	0	0	0	0	1	0	0	0	8854	1116	39	1	259	1	LMO4	1	87805235	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	40057127	87805235	161445386	3	18863											
PSRC1	84722	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	109824628	109824628	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PSRC1	NM_001032291	exon4	c.G132T	p.R44R	GAGGCCCCGTCGA	.	22	8	31	0	.	90	A	109824628	C	A	109824628	2	1	146	1	0	0	0	0	0	0	0	1	12719	610	22	3		3	PSRC1	1	109824628	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	22019393	109824628	139425993	4	18864											
FCGR1A	2209	bcgsc.ca;mdanderson.org	37	1	149761838	149761838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FCGR1A	NM_000566	exon5	c.C788A	p.A263D	AGGCTGCCACAGA	.	203	91	165	2	.	23	A	149761838	C	A	149761838	3	1	146	1	0	0	0	0	1	0	0	0	5779	739	26	3	806	3	FCGR1A	1	149761838	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	39937210	149761838	99488783	5	18865											
UBAP2L	9898	hgsc.bcm.edu;bcgsc.ca	37	1	154221748	154221748	+	Missense_Mutation	SNP	G	G	T	rs200980910	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBAP2L	NM_001127320	exon12	c.G1048T	p.G350C	GATGTCGGTGAAG	.	231	13	170	0	G|0.999;A|0.000	91	T	154221748	G	T	154221748	3	4	146	1	0	0	0	0	1	0	0	0	16835	1116	39	1	1090	1	UBAP2L	1	154221748	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	4459910	154221748	95028873	6	18866											
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175048705	175048705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNN	NM_022093	exon3	c.G646A	p.V216M	CGCGGCGTGTGCC	.	54	26	55	0	.	138	A	175048705	G	A	175048705	3	1	146	1	0	0	0	0	1	0	0	0	16320	1145	40	1	652	1	TNN	1	175048705	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	20826957	175048705	74201916	7	18867											
RALGPS2	55103	broad.mit.edu;bcgsc.ca	37	1	178866879	178866879	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RALGPS2	NM_152663	exon17	c.C1512A	p.T504T	GGCTACCGAAAGA	.	197	10	118	0	.	226	A	178866879	C	A	178866879	2	1	146	1	0	0	0	0	0	0	0	1	13018	639	23	1		1	RALGPS2	1	178866879	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	3818174	178866879	70383742	8	18868											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180064893	180064893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CEP350	NM_014810	exon35	c.T8747C	p.V2916A	TGGCAGTCCCCCA	.	140	31	73	0	.	26	C	180064893	T	C	180064893	3	2	146	1	0	0	0	0	1	0	0	0	3254	1667	58	2	8881	2	CEP350	1	180064893	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	1198014	180064893	69185728	9	18869											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204438107	204438107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PIK3C2B	NM_002646	exon3	c.C824T	p.A275V	CTCCTGGCCACGG	.	67	22	51	0	.	1310	A	204438107	G	A	204438107	3	1	146	1	0	0	0	0	1	0	0	0	11910	1203	42	3	4208	3	PIK3C2B	1	204438107	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	24373214	204438107	44812514	10	18870											
IKBKE	9641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206649567	206649567	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IKBKE	NM_001193322	exon6	c.C402T	p.R134R	GCATCGCGACATC	.	64	38	58	0	.	1061	T	206649567	C	T	206649567	2	4	146	1	0	0	0	0	0	0	0	1	7612	755	27	1		1	IKBKE	1	206649567	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	2211460	206649567	42601054	11	18871											
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55254616	55254616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A619G	p.M207V	AGTCCATATTTTC	.	50	16	22	0	.	155	C	55254616	T	C	55254616	3	2	146	1	0	0	0	0	1	0	0	0	13728	1406	49	2	3025	2	RTN4	2	55254616	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10		55254616	187944757	12	18872	105	2									
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55254618	55254618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A617C	p.N206T	TCCATATTTTCTG	.	49	17	21	0	.	155	G	55254618	T	G	55254618	3	3	146	1	0	0	0	0	1	0	0	0	13728	1493	52	5	3027	5	RTN4	2	55254618	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	2	55254618	187944755	13	18873	105	2									
OTX1	5013	ucsc.edu;bcgsc.ca	37	2	63281316	63281316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OTX1	NM_014562	exon4	c.C232T	p.P78S	AACCTGCCGGAGT	.	33	4	51	0	.	70	T	63281316	C	T	63281316	3	4	146	1	0	0	0	0	1	0	0	0	11320	739	26	3	238	3	OTX1	2	63281316	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	8026698	63281316	179918057	14	18874											
TBC1D8	11138	ucsc.edu;bcgsc.ca	37	2	101624722	101624722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBC1D8	NM_001102426	exon20	c.A2984G	p.Q995R	CAGAACTGGATAA	.	34	4	23	0	.	25	C	101624722	T	C	101624722	3	2	146	1	0	0	0	0	1	0	0	0	15622	1580	55	2	442	2	TBC1D8	2	101624722	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	38343406	101624722	141574651	15	18875											
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	169938117	169938117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DHRS9	NM_005771	exon5	c.T26A	p.L9Q	GCCTCCTAATCCT	.	50	11	31	0	.	90	A	169938117	T	A	169938117	3	1	146	1	0	0	0	0	1	0	0	0	4498	1522	53	4	28	4	DHRS9	2	169938117	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	68313395	169938117	73261256	16	18876											
ZAK	0	broad.mit.edu;bcgsc.ca	37	2	173955772	173955772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZAK	NM_133646	exon2	c.G13T	p.G5C	TCTCTCGGTGCCT	.	216	11	118	0	.	522	T	173955772	G	T	173955772	3	4	146	1	0	0	0	0	1	0	0	0	17509	1116	39	1	15	1	ZAK	2	173955772	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	4017655	173955772	69243601	17	18877											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179648462	179648462	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTN	NM_001267550	exon17	c.A2826G	p.P942P	AGTTGGTGGAGTA	.	161	76	96	0	.	636	C	179648462	T	C	179648462	2	2	146	1	0	0	0	0	0	0	0	1	16732	1683	59	2		2	TTN	2	179648462	Silent	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	5692690	179648462	63550911	18	18878											
SLC39A10	57181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196593015	196593015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC39A10	NM_020342	exon9	c.C2279A	p.T760K	ACATCACACTTTG	.	315	151	162	0	.	92	A	196593015	C	A	196593015	3	1	146	1	0	0	0	0	1	0	0	0	14613	478	17	3	2309	3	SLC39A10	2	196593015	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	16944553	196593015	46606358	19	18879											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215843664	215843664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA12	NM_173076	exon32	c.G4841A	p.G1614E	AGCTCTCCCCCAA	.	128	22	75	0	.	99	T	215843664	C	T	215843664	3	4	146	1	0	0	0	0	1	0	0	0	30	855	30	3	3034	3	ABCA12	2	215843664	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	19250649	215843664	27355709	20	18880											
SLC19A3	80704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228563990	228563990	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC19A3	NM_025243	exon3	c.G441T	p.T147T	GGCCAGCGTGACG	.	43	9	31	0	.	92	A	228563990	C	A	228563990	2	1	146	1	0	0	0	0	0	0	0	1	14430	755	27	1		1	SLC19A3	2	228563990	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	12720326	228563990	14635383	21	18881											
TATDN2	9797	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10290922	10290922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TATDN2	NM_014760	exon2	c.G38T	p.S13I	ACTGGAGCAGCAC	.	63	13	52	0	.	92	T	10290922	G	T	10290922	3	4	146	1	0	0	0	0	1	0	0	0	15589	971	34	3	40	3	TATDN2	3	10290922	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		10290922	187731508	22	18882											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41275047	41275047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CTNNB1	NM_001098209	exon9	c.C1213T	p.L405F	GGGACTCTTGTTC	.	63	18	56	0	.	24361	T	41275047	C	T	41275047	3	4	146	1	0	0	0	0	1	0	0	0	4016	913	32	3	1243	3	CTNNB1	3	41275047	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	30984125	41275047	156747383	23	18883											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52549455	52549455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STAB1	NM_015136	exon37	c.G3881T	p.S1294I	GGAAGAGCTGTGT	.	35	16	50	0	.	139	T	52549455	G	T	52549455	3	4	146	1	0	0	0	0	1	0	0	0	15236	971	34	3	4027	3	STAB1	3	52549455	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	11274408	52549455	145472975	24	18884											
C3orf67	200844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58855185	58855185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C3orf67	NM_198463	exon9	c.G509A	p.R170Q	CATGATCGGTTAT	.	154	46	100	0	.	68	T	58855185	C	T	58855185	3	4	146	1	0	0	0	0	1	0	0	0	2241	884	31	1	1214	1	C3orf67	3	58855185	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	6305730	58855185	139167245	25	18885											
CADPS	8618	broad.mit.edu;bcgsc.ca	37	3	62578422	62578422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CADPS	NM_003716	exon7	c.T1327G	p.W443G	TGCCCCAGCTGCA	.	13	5	24	0	.	281	C	62578422	A	C	62578422	3	2	146	1	0	0	0	0	1	0	0	0	2570	202	7	5	2903	5	CADPS	3	62578422	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	3723237	62578422	135444008	26	18886											
ROBO2	6092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77626718	77626718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ROBO2	NM_002942	exon15	c.G2281T	p.D761Y	TCCTGGGATCCTC	.	133	47	84	1	.	328	T	77626718	G	T	77626718	3	4	146	1	0	0	0	0	1	0	0	0	13514	1174	41	3	2341	3	ROBO2	3	77626718	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	15048296	77626718	120395712	27	18887											
EPHA3	2042	ucsc.edu;bcgsc.ca	37	3	89391167	89391167	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA3	NM_005233	exon5	c.C1233A	p.A411A	TGATGCCGTTAAT	.	53	5	42	0	.	1500	A	89391167	C	A	89391167	2	1	146	1	0	0	0	0	0	0	0	1	5168	639	23	1		1	EPHA3	3	89391167	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	11764449	89391167	108631263	28	18888											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97202883	97202883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA6	NM_001080448	exon10	c.T2180C	p.I727T	TTCGTATTGAGAG	.	93	39	85	0	.	1561	C	97202883	T	C	97202883	3	2	146	1	0	0	0	0	1	0	0	0	5171	1493	52	2	2286	2	EPHA6	3	97202883	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	7811716	97202883	100819547	29	18889											
CASR	846	ucsc.edu;bcgsc.ca	37	3	122003982	122003982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CASR	NM_001178065	exon7	c.A3211G	p.S1071G	TCACAGAGCTTTG	.	44	4	34	0	.	97	G	122003982	A	G	122003982	3	3	146	1	0	0	0	0	1	0	0	0	2682	304	11	2	3233	2	CASR	3	122003982	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	24801099	122003982	76018448	30	18890											
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2698242	2698242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM193A	NM_001256667	exon17	c.G2622T	p.L874F	TTTGTTGCAGTTT	.	190	54	163	0	.	93	T	2698242	G	T	2698242	3	4	146	1	0	0	0	0	1	0	0	0	5524	1310	46	3	2610	3	FAM193A	4	2698242	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		2698242	188456034	31	18891											
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	42065035	42065035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC30A9	NM_006345	exon11	c.C929T	p.S310L	TTTCTTCGCTAAT	.	411	17	246	0	.	91	T	42065035	C	T	42065035	3	4	146	1	0	0	0	0	1	0	0	0	14562	893	31	1	971	1	SLC30A9	4	42065035	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	39366793	42065035	149089241	32	18892											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57860856	57860856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POLR2B	NM_000938	exon5	c.A400G	p.K134E	GTCATTAAAGAAG	.	46	29	54	0	.	92	G	57860856	A	G	57860856	3	3	146	1	0	0	0	0	1	0	0	0	12215	363	13	2	418	2	POLR2B	4	57860856	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	15795821	57860856	133293420	33	18893											
LRIT3	345193	ucsc.edu;bcgsc.ca	37	4	110791566	110791566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRIT3	NM_198506	exon4	c.T1661C	p.V554A	CCTGTGTCTGTCC	.	46	4	53	0	.	90	C	110791566	T	C	110791566	3	2	146	1	0	0	0	0	1	0	0	0	8949	1667	58	2	1536	2	LRIT3	4	110791566	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	52930710	110791566	80362710	34	18894											
FGA	2243	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155505870	155505870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FGA	NM_000508	exon6	c.G2007T	p.L669F	TCCTCCCAAACTG	.	56	7	54	0	.	93	A	155505870	C	A	155505870	3	1	146	1	0	0	0	0	1	0	0	0	5830	593	21	3	597	3	FGA	4	155505870	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	44714304	155505870	35648406	35	18895											
KLKB1	3818	ucsc.edu;bcgsc.ca	37	4	187175845	187175845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLKB1	NM_000892	exon12	c.C1417A	p.Q473K	ATTCACCAAAACT	.	43	4	78	0	.	227	A	187175845	C	A	187175845	3	1	146	1	0	0	0	0	1	0	0	0	8412	595	21	3	1459	3	KLKB1	4	187175845	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	31669975	187175845	3978431	36	18896											
MYO10	4651	ucsc.edu;bcgsc.ca	37	5	16783575	16783575	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO10	NM_012334	exon5	c.T471C	p.G157G	ACTTTCACCACTG	.	72	6	67	0	.	3	G	16783575	A	G	16783575	2	3	146	1	0	0	0	0	0	0	0	1	10062	146	6	2		2	MYO10	5	16783575	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10		16783575	164131685	37	18897											
CAPSL	133690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35910562	35910562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CAPSL	NM_144647	exon3	c.T221A	p.V74D	TCCATGACCACAG	.	115	36	94	0	.	91	T	35910562	A	T	35910562	3	4	146	1	0	0	0	0	1	0	0	0	2639	275	10	4	417	4	CAPSL	5	35910562	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	19126987	35910562	145004698	38	18898											
TMEM174	134288	ucsc.edu;bcgsc.ca	37	5	72469916	72469916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMEM174	NM_153217	exon2	c.A656G	p.E219G	TAGAAGAGACACA	.	45	4	39	0	.	91	G	72469916	A	G	72469916	3	3	146	1	0	0	0	0	1	0	0	0	16087	304	11	2	662	2	TMEM174	5	72469916	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	36559354	72469916	108445344	39	18899											
SLC35A4	113829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139947621	139947621	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC35A4	NM_080670	exon3	c.C867A	p.V289V	GGTGGTCAACGCC	.	61	23	52	0	.	90	A	139947621	C	A	139947621	2	1	146	1	0	0	0	0	0	0	0	1	14573	813	29	3		3	SLC35A4	5	139947621	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	67477705	139947621	40967639	40	18900											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140563257	140563257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCDHB16	NM_020957	exon1	c.T1123A	p.S375T	CCTGACTCCGGAA	.	59	26	77	0	.	92	A	140563257	T	A	140563257	3	1	146	1	0	0	0	0	1	0	0	0	11541	1551	54	4	1125	4	PCDHB16	5	140563257	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	615636	140563257	40352003	41	18901											
RBM22	55696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150072842	150072842	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBM22	NM_018047	exon9	c.A939G	p.K313K	TTTCTCTTTTTCT	.	29	6	49	0	.	226	C	150072842	T	C	150072842	2	2	146	1	0	0	0	0	0	0	0	1	13122	1606	56	2		2	RBM22	5	150072842	Silent	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	9509585	150072842	30842418	42	18902											
CPEB4	80315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	173382915	173382915	+	Silent	SNP	G	G	T	rs199562365	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPEB4	NM_030627	exon10	c.G1965T	p.V655V	GCAGGTGGAAGTT	.	39	6	27	0	G|0.999;A|0.001	90	T	173382915	G	T	173382915	2	4	146	1	0	0	0	0	0	0	0	1	3803	1335	47	3		3	CPEB4	5	173382915	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	23310073	173382915	7532345	43	18903											
LRRC16A	55604	broad.mit.edu;bcgsc.ca	37	6	25492251	25492251	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRRC16A	NM_001173977	exon15	c.C1219A	p.R407R	TCTCACCGGTATA	.	186	10	133	0	.	137	A	25492251	C	A	25492251	2	1	146	1	0	0	0	0	0	0	0	1	8971	666	23	1		1	LRRC16A	6	25492251	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10		25492251	145622816	44	18904											
HIST1H3B	8358	ucsc.edu;bcgsc.ca	37	6	26032260	26032260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HIST1H3B	NM_003537	exon1	c.A29G	p.K10R	GTGGATTTCCGAG	.	26	4	33	0	.	92	C	26032260	T	C	26032260	3	2	146	1	0	0	0	0	1	0	0	0	7156	1841	64	2	385	2	HIST1H3B	6	26032260	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	540009	26032260	145082807	45	18905											
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28269056	28269056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PGBD1	NM_001184743	exon7	c.G1425T	p.R475S	TAGAAGGGAAATG	.	129	54	94	0	.	94	T	28269056	G	T	28269056	3	4	146	1	0	0	0	0	1	0	0	0	11780	1223	43	3	1447	3	PGBD1	6	28269056	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	2236796	28269056	142846011	46	18906											
CUL9	23113	ucsc.edu;bcgsc.ca	37	6	43172823	43172823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CUL9	NM_015089	exon23	c.G4602T	p.L1534F	CGCCTTGCTGCAG	.	25	5	37	0	.	529	T	43172823	G	T	43172823	3	4	146	1	0	0	0	0	1	0	0	0	4061	1310	46	3	4688	3	CUL9	6	43172823	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	14903767	43172823	127942244	47	18907											
ZNF318	24149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43323547	43323547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF318	NM_014345	exon4	c.C1525T	p.R509C	GAATGCGGGAAAA	.	104	40	64	1	.	157	A	43323547	G	A	43323547	3	1	146	1	0	0	0	0	1	0	0	0	17833	1116	39	1	5342	1	ZNF318	6	43323547	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	150724	43323547	127791520	48	18908											
MAD2L1BP	9587	ucsc.edu;bcgsc.ca	37	6	43608100	43608100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MAD2L1BP	NM_001003690	exon4	c.C751A	p.R251S	GGACACCGCAACT	.	43	4	38	0	.	90	A	43608100	C	A	43608100	3	1	146	1	0	0	0	0	1	0	0	0	9149	652	23	1	815	1	MAD2L1BP	6	43608100	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	284553	43608100	127506967	49	18909											
MED23	9439	ucsc.edu;bcgsc.ca	37	6	131917145	131917145	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MED23	NM_015979	exon23	c.G2955T	p.P985P	GGATACCGGAAGC	.	36	5	37	0	.	24	A	131917145	C	A	131917145	2	1	146	1	0	0	0	0	0	0	0	1	9441	639	23	1		1	MED23	6	131917145	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	88309045	131917145	39197922	50	18910											
NMBR	4829	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	142409410	142409410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NMBR	NM_002511	exon1	c.T386G	p.V129G	ACGGAAACCCCCA	.	23	7	20	0	.	946	C	142409410	A	C	142409410	3	2	146	1	0	0	0	0	1	0	0	0	10487	43	2	5	798	5	NMBR	6	142409410	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	10492265	142409410	28705657	51	18911											
SUN1	23353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	909049	909049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SUN1	NM_001130965	exon17	c.C2044T	p.L682F	GTGAGGCTCTCCA	.	22	6	24	0	.	90	T	909049	C	T	909049	3	4	146	1	0	0	0	0	1	0	0	0	15388	797	28	3	2293	3	SUN1	7	909049	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10		909049	158229614	52	18912											
NPC1L1	29881	ucsc.edu;bcgsc.ca	37	7	44575878	44575878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NPC1L1	NM_001101648	exon4	c.T1831C	p.F611L	CCTGGAACATGCC	.	40	4	51	0	.	94	G	44575878	A	G	44575878	3	3	146	1	0	0	0	0	1	0	0	0	10571	43	2	2	2316	2	NPC1L1	7	44575878	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	43666829	44575878	114562785	53	18913											
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48443391	48443391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA13	NM_152701	exon39	c.G11985T	p.R3995S	GTCGAGGACCGTG	.	50	14	48	0	.	521	T	48443391	G	T	48443391	3	4	146	1	0	0	0	0	1	0	0	0	31	1165	41	3	11968	3	ABCA13	7	48443391	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	3867513	48443391	110695272	54	18914											
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	87214868	87214868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCB1	NM_000927	exon5	c.246delA	p.A82fs	ATTTCCTGCATTT	.	40	11	46	0	.	582	-	87214868	T	-	87214868	7	5	146	1	0	1	0	1	0	0	0	0	40	1567	55	0	3696	0	ABCB1	7	87214868	Frame_Shift_Del	DEL	T	TCGA-G3-A25Z-01A-11D-A16V-10	38771477	87214868	71923795	55	18915											
IQUB	154865	ucsc.edu;bcgsc.ca	37	7	123101527	123101527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IQUB	NM_178827	exon11	c.C1891A	p.L631I	TCTGAAGGTTAAT	.	36	4	68	0	.	156	T	123101527	G	T	123101527	3	4	146	1	0	0	0	0	1	0	0	0	7820	1000	35	3	496	3	IQUB	7	123101527	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	35886659	123101527	36037136	56	18916											
UBE3C	9690	ucsc.edu;bcgsc.ca	37	7	157046656	157046656	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBE3C	NM_014671	exon20	c.A2703G	p.E901E	AGTTGAACTAAAA	.	40	4	36	0	.	704	G	157046656	A	G	157046656	2	3	146	1	0	0	0	0	0	0	0	1	16878	40	2	2		2	UBE3C	7	157046656	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	33945129	157046656	2092007	57	18917											
RP1L1	94137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10470139	10470139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RP1L1	NM_178857	exon4	c.G1469T	p.G490V	TCAGCCCCTATCT	.	36	11	25	0	.	139	A	10470139	C	A	10470139	3	1	146	1	0	0	0	0	1	0	0	0	13533	623	22	3	5737	3	RP1L1	8	10470139	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10		10470139	135893883	58	18918											
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	8	77766028	77766028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZFHX4	NM_024721	exon10	c.A6871G	p.T2291A	GCAGAAACAAAAG	.	41	4	39	0	.	98	G	77766028	A	G	77766028	3	3	146	1	0	0	0	0	1	0	0	0	17632	43	2	2	6905	2	ZFHX4	8	77766028	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	67295889	77766028	68597994	59	18919											
ESRP1	54845	ucsc.edu;bcgsc.ca	37	8	95654259	95654259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ESRP1	NM_001122827	exon2	c.A208G	p.I70V	ACTAAAATAGACG	.	42	4	38	0	.	94	G	95654259	A	G	95654259	3	3	146	1	0	0	0	0	1	0	0	0	5258	101	4	2	214	2	ESRP1	8	95654259	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	17888231	95654259	50709763	60	18920											
TRPM3	80036	ucsc.edu;bcgsc.ca	37	9	73254017	73254017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM3	NM_001007471	exon11	c.C1540A	p.R514S	GAAAACGGTGCAT	.	42	5	53	0	.	521	T	73254017	G	T	73254017	3	4	146	1	0	0	0	0	1	0	0	0	16584	1116	39	1	3683	1	TRPM3	9	73254017	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		73254017	67959414	61	18921											
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	112145782	112145782	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPN3	NM_002829	exon23	c.2303delG	p.G768fs	AAGCCGCCGTGGT	.	55	18	60	0	.	229	-	112145782	C	-	112145782	7	5	146	1	0	1	0	1	0	0	0	0	12789	739	26	0	454	0	PTPN3	9	112145782	Frame_Shift_Del	DEL	C	TCGA-G3-A25Z-01A-11D-A16V-10	38891765	112145782	29067649	62	18922											
TOR2A	27433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130494466	130494466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TOR2A	NM_001134430	exon4	c.C685T	p.R229C	GAGCACGCAGTGC	.	47	19	78	0	.	90	A	130494466	G	A	130494466	3	1	146	1	0	0	0	0	1	0	0	0	16372	1088	38	1	156	1	TOR2A	9	130494466	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	18348684	130494466	10718965	63	18923											
EHMT1	79813	ucsc.edu;bcgsc.ca	37	9	140693366	140693366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EHMT1	NM_024757	exon17	c.G2607T	p.Q869H	CTGTCAGGTACAG	.	23	4	25	0	.	154	T	140693366	G	T	140693366	3	4	146	1	0	0	0	0	1	0	0	0	4983	1014	35	3	2722	3	EHMT1	9	140693366	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	10198900	140693366	520065	64	18924											
USP6NL	9712	ucsc.edu;bcgsc.ca	37	10	11543112	11543112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USP6NL	NM_001080491	exon6	c.G423T	p.R141S	CAGGTCCCTTGTT	.	47	4	46	0	.	628	A	11543112	C	A	11543112	3	1	146	1	0	0	0	0	1	0	0	0	17084	622	22	3	2150	3	USP6NL	10	11543112	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10		11543112	123991635	65	18925											
ZNF248	57209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38121994	38121994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF248	NM_001267606	exon4	c.G289C	p.D97H	GGTCATCTTCATT	.	76	26	40	0	.	91	G	38121994	C	G	38121994	3	3	146	1	0	0	0	0	1	0	0	0	17790	913	32	4	1454	4	ZNF248	10	38121994	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	26578882	38121994	97412753	66	18926											
CCDC6	8030	ucsc.edu;bcgsc.ca	37	10	61554242	61554242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC6	NM_005436	exon8	c.C1219A	p.H407N	TACCATGGGATGT	.	41	4	35	0	.	686	T	61554242	G	T	61554242	3	4	146	1	0	0	0	0	1	0	0	0	2830	1348	47	3	213	3	CCDC6	10	61554242	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	23432248	61554242	73980505	67	18927											
TET1	80312	ucsc.edu;bcgsc.ca	37	10	70333688	70333688	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TET1	NM_030625	exon2	c.C1593A	p.A531A	TATAGCCCAACTC	.	43	4	30	0	.	663	A	70333688	C	A	70333688	2	1	146	1	0	0	0	0	0	0	0	1	15766	610	22	3		3	TET1	10	70333688	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	8779446	70333688	65201059	68	18928											
DNTT	1791	ucsc.edu;bcgsc.ca	37	10	98064323	98064323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNTT	NM_001017520	exon1	c.G69T	p.M23I	CTTGATGGCCTCC	.	31	4	27	0	.	228	T	98064323	G	T	98064323	3	4	146	1	0	0	0	0	1	0	0	0	4680	1348	47	3	71	3	DNTT	10	98064323	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	27730635	98064323	37470424	69	18929											
NRAP	4892	ucsc.edu;bcgsc.ca	37	10	115385895	115385895	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NRAP	NM_001261463	exon21	c.C2155A	p.R719R	TCTGCCGGTAGTT	.	42	4	39	0	.	522	T	115385895	G	T	115385895	2	4	146	1	0	0	0	0	0	0	0	1	10638	1115	39	1		1	NRAP	10	115385895	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	17321572	115385895	20148852	70	18930											
PTPRE	5791	broad.mit.edu;bcgsc.ca	37	10	129871633	129871633	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPRE	NM_006504	exon17	c.C1497A	p.T499T	CGCCACCCAGGGG	.	79	6	92	0	.	227	A	129871633	C	A	129871633	2	1	146	1	0	0	0	0	0	0	0	1	12800	610	22	3		3	PTPRE	10	129871633	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	14485738	129871633	5663114	71	18931											
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134018356	134018356	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DPYSL4	NM_006426	exon14	c.T1641C	p.D547D	GGCTGATGACCAC	.	68	29	86	0	.	514	C	134018356	T	C	134018356	2	2	146	1	0	0	0	0	0	0	0	1	4749	1461	51	2		2	DPYSL4	10	134018356	Silent	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	4146723	134018356	1516391	72	18932											
TRPM5	29850	ucsc.edu;bcgsc.ca	37	11	2426267	2426267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM5	NM_014555	exon24	c.A3398G	p.Q1133R	CAGTGCTGAGAGC	.	44	4	46	0	.	137	C	2426267	T	C	2426267	3	2	146	1	0	0	0	0	1	0	0	0	16586	1580	55	2	103	2	TRPM5	11	2426267	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10		2426267	132580249	73	18933											
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17530990	17530990	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USH1C	NM_153676	exon18	c.T1926C	p.N642N	CACTGGATTGCCT	.	91	21	96	0	.	91	G	17530990	A	G	17530990	2	3	146	1	0	0	0	0	0	0	0	1	17031	330	12	2		2	USH1C	11	17530990	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	15104723	17530990	117475526	74	18934											
TRAF6	7189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36516546	36516546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRAF6	NM_004620	exon5	c.A658G	p.T220A	GTATAGTATTGCA	.	354	123	197	0	.	660	C	36516546	T	C	36516546	3	2	146	1	0	0	0	0	1	0	0	0	16442	1638	57	2	922	2	TRAF6	11	36516546	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	18985556	36516546	98489970	75	18935											
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45948313	45948313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GYLTL1B	NM_152312	exon10	c.C1216T	p.R406W	GAGTTCCGGCAGC	.	34	16	32	0	.	92	T	45948313	C	T	45948313	3	4	146	1	0	0	0	0	1	0	0	0	6907	643	23	1	1250	1	GYLTL1B	11	45948313	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	9431767	45948313	89058203	76	18936											
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347263	48347263	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR4C3	NM_001004702	exon1	c.G771A	p.G257G	AGATGGGAGATGC	.	206	21	183	0	.	69	A	48347263	G	A	48347263	2	1	146	1	0	0	0	0	0	0	0	1	11050	1161	41	3		3	OR4C3	11	48347263	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	2398950	48347263	86659253	77	18937											
OR5I1	10798	bcgsc.ca;mdanderson.org	37	11	55703216	55703216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR5I1	NM_006637	exon1	c.T661C	p.F221L	TGAAAAAGTAGGA	.	52	26	48	2	.	69	G	55703216	A	G	55703216	3	3	146	1	0	0	0	0	1	0	0	0	11164	72	3	2	286	2	OR5I1	11	55703216	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	7355953	55703216	79303300	78	18938											
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66204833	66204833	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MRPL11	NM_170739	exon3	c.301delG	p.A101fs	GCCGGGCCCCCTT	.	42	12	75	0	.	90	-	66204833	C	-	66204833	7	5	146	1	0	1	0	1	0	0	0	0	9776	739	26	0	366	0	MRPL11	11	66204833	Frame_Shift_Del	DEL	C	TCGA-G3-A25Z-01A-11D-A16V-10	10501617	66204833	68801683	79	18939											
CPT1A	1374	ucsc.edu;bcgsc.ca	37	11	68525193	68525193	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPT1A	NM_001876	exon19	c.T2241C	p.S747S	GCGATGAGAATCC	.	42	4	30	0	.	149	G	68525193	A	G	68525193	2	3	146	1	0	0	0	0	0	0	0	1	3831	291	11	2		2	CPT1A	11	68525193	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	2320360	68525193	66481323	80	18940											
LRP6	4040	ucsc.edu;bcgsc.ca	37	12	12332824	12332824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRP6	NM_002336	exon7	c.C1465A	p.L489I	AACCAAGAGAAGT	.	44	4	52	0	.	661	T	12332824	G	T	12332824	3	4	146	1	0	0	0	0	1	0	0	0	8962	942	33	3	3444	3	LRP6	12	12332824	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		12332824	121519071	81	18941											
ABCC9	10060	ucsc.edu;bcgsc.ca	37	12	21991070	21991070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCC9	NM_005691	exon28	c.C3508A	p.P1170T	GCAGAGGGAGCTG	.	38	4	48	0	.	96	T	21991070	G	T	21991070	3	4	146	1	0	0	0	0	1	0	0	0	59	1232	43	3	1327	3	ABCC9	12	21991070	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	9658246	21991070	111860825	82	18942											
ERGIC2	51290	ucsc.edu;bcgsc.ca	37	12	29509352	29509352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ERGIC2	NM_016570	exon8	c.A535G	p.N179D	CTTTATTGACATA	.	43	4	37	0	.	91	C	29509352	T	C	29509352	3	2	146	1	0	0	0	0	1	0	0	0	5224	1812	63	2	626	2	ERGIC2	12	29509352	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	7518282	29509352	104342543	83	18943											
BRAP	8315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112093435	112093435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRAP	NM_006768	exon10	c.C1246G	p.L416V	ATTCCAGCTGGCT	.	105	38	78	0	.	710	C	112093435	G	C	112093435	3	2	146	1	0	0	0	0	1	0	0	0	1497	962	34	4	544	4	BRAP	12	112093435	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	82584083	112093435	21758460	84	18944											
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133733009	133733009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF10	NM_015394	exon5	c.A1177G	p.I393V	CATCTCATTCTGC	.	66	25	64	0	.	154	G	133733009	A	G	133733009	3	3	146	1	0	0	0	0	1	0	0	0	17709	217	8	2	1191	2	ZNF10	12	133733009	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	21639574	133733009	118886	85	18945											
ZNF268	10795	broad.mit.edu;bcgsc.ca	37	12	133768159	133768159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF268	NM_152943	exon4	c.A319G	p.R107G	CTGTACAGGAGTG	.	147	8	119	0	.	23	G	133768159	A	G	133768159	3	3	146	1	0	0	0	0	1	0	0	0	17804	179	7	2	329	2	ZNF268	12	133768159	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	35150	133768159	83736	86	18946											
POMP	51371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29242666	29242666	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POMP	NM_015932	exon4	c.A219G	p.L73L	GGGTCTATTTGCT	.	75	19	68	0	.	90	G	29242666	A	G	29242666	2	3	146	1	0	0	0	0	0	0	0	1	12244	436	16	2		2	POMP	13	29242666	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10		29242666	85927212	87	18947											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35756573	35756573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NBEA	NM_015678	exon29	c.G4739A	p.R1580H	AGTATCGTGACAT	.	184	62	76	0	.	144	A	35756573	G	A	35756573	3	1	146	1	0	0	0	0	1	0	0	0	10187	1145	40	1	4853	1	NBEA	13	35756573	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	6513907	35756573	79413305	88	18948											
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917336	26917336	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NOVA1	NM_002515	exon5	c.T1353A	p.T451T	TGCACCAGTCAAC	.	263	96	232	0	.	229	T	26917336	A	T	26917336	2	4	146	1	0	0	0	0	0	0	0	1	10554	175	7	4		4	NOVA1	14	26917336	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10		26917336	80432204	89	18949											
PLEKHG3	26030	ucsc.edu;bcgsc.ca	37	14	65208684	65208684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEKHG3	NM_015549	exon14	c.A2281G	p.I761V	GTGAAGATCTGGG	.	27	4	35	0	.	91	G	65208684	A	G	65208684	3	3	146	1	0	0	0	0	1	0	0	0	12070	333	12	2	2331	2	PLEKHG3	14	65208684	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	38291348	65208684	42140856	90	18950											
GPHN	10243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67382766	67382766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPHN	NM_001024218	exon6	c.G436C	p.G146R	CTGCCAGGTAGCA	.	73	20	70	1	.	228	C	67382766	G	C	67382766	3	2	146	1	0	0	0	0	1	0	0	0	6610	1000	35	4	458	4	GPHN	14	67382766	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	2174082	67382766	39966774	91	18951											
SLC10A1	6554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70252897	70252897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC10A1	NM_003049	exon2	c.T484C	p.S162P	CCAGTGATATCAC	.	76	36	70	0	.	91	G	70252897	A	G	70252897	3	3	146	1	0	0	0	0	1	0	0	0	14373	333	12	2	581	2	SLC10A1	14	70252897	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	2870131	70252897	37096643	92	18952											
TNFAIP2	7127	ucsc.edu;bcgsc.ca	37	14	103600074	103600074	+	Missense_Mutation	SNP	G	G	A	rs201264217		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP2	NM_006291	exon10	c.G1757A	p.R586H	TCATTCGCCTGCA	.	25	4	18	0	.	90	A	103600074	G	A	103600074	3	1	146	1	0	0	0	0	1	0	0	0	16270	1087	38	1	1795	1	TNFAIP2	14	103600074	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	33347177	103600074	3749466	93	18953											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28465614	28465614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HERC2	NM_004667	exon37	c.C5829A	p.D1943E	CTCTGTGTCCGAA	.	23	9	18	0	.	234	T	28465614	G	T	28465614	3	4	146	1	0	0	0	0	1	0	0	0	7058	1368	48	3	8903	3	HERC2	15	28465614	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		28465614	74065778	94	18954											
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48595052	48595052	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC12A1	NM_001184832	exon27	c.T3270C	p.N1090N	AGGAAATCACAAA	.	89	31	66	0	.	24	C	48595052	T	C	48595052	2	2	146	1	0	0	0	0	0	0	0	1	14382	1432	50	2		2	SLC12A1	15	48595052	Silent	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	20129438	48595052	53936340	95	18955											
TNFAIP8L3	388121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51397266	51397266	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP8L3	NM_207381	exon1	c.G108A	p.R36R	GGCATCCCTTGTG	.	126	37	111	0	.	90	T	51397266	C	T	51397266	2	4	146	1	0	0	0	0	0	0	0	1	16276	622	22	3		3	TNFAIP8L3	15	51397266	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	2802214	51397266	51134126	96	18956											
MEGF11	84465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66209210	66209210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MEGF11	NM_032445	exon17	c.C2171T	p.A724V	TGGCAGGCCCCGT	.	81	29	44	0	.	69	A	66209210	G	A	66209210	3	1	146	1	0	0	0	0	1	0	0	0	9461	1203	42	3	991	3	MEGF11	15	66209210	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	14811944	66209210	36322182	97	18957											
ISLR	3671	ucsc.edu;bcgsc.ca	37	15	74468332	74468332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ISLR	NM_201526	exon2	c.C1133A	p.P378Q	TGCAGCCATCAGG	.	40	4	43	0	.	155	A	74468332	C	A	74468332	3	1	146	1	0	0	0	0	1	0	0	0	7858	594	21	3	1135	3	ISLR	15	74468332	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	8259122	74468332	28063060	98	18958											
SIN3A	25942	ucsc.edu;bcgsc.ca	37	15	75694204	75694204	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SIN3A	NM_001145358	exon10	c.T1515C	p.S505S	GAAAGGAGAGACT	.	32	4	40	0	.	230	G	75694204	A	G	75694204	2	3	146	1	0	0	0	0	0	0	0	1	14325	291	11	2		2	SIN3A	15	75694204	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	1225872	75694204	26837188	99	18959											
RCN2	5955	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77241537	77241537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RCN2	NM_001271837	exon8	c.G982T	p.D328Y	CATGATGACTATT	.	37	9	50	0	.	90	T	77241537	G	T	77241537	3	4	146	1	0	0	0	0	1	0	0	0	13180	1290	45	3	954	3	RCN2	15	77241537	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	1547333	77241537	25289855	100	18960											
AP3B2	8120	ucsc.edu;bcgsc.ca	37	15	83331891	83331891	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	AP3B2	NM_004644	exon21	c.C2535A	p.T845T	TACCAGGGTGGAG	.	31	4	48	0	.	94	T	83331891	G	T	83331891	2	4	146	1	0	0	0	0	0	0	0	1	745	1219	43	3		3	AP3B2	15	83331891	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	6090354	83331891	19199501	101	18961											
AGBL1	123624	ucsc.edu;bcgsc.ca	37	15	86838529	86838529	+	Missense_Mutation	SNP	T	T	C	rs190282686	by1000genomes	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_152336	exon16	c.T2126C	p.V709A	AAGAGGTCTACTT	.	37	4	30	1	T|0.999;C|0.000	.	C	86838529	T	C	86838529	3	2	146	1	0	0	0	0	1	0	0	0	375	1667	58	2	2184	2	AGBL1	15	86838529	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	3506638	86838529	15692863	102	18962											
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4943555	4943555	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPL	NM_002705	exon13	c.C1479A	p.T493T	ATTCTCGGTCTTC	.	48	4	70	0	.	95	T	4943555	G	T	4943555	2	4	146	1	0	0	0	0	0	0	0	1	12334	1103	39	1		1	PPL	16	4943555	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		4943555	85411198	103	18963											
CDH8	1006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61859057	61859057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDH8	NM_001796	exon5	c.A694G	p.M232V	TGTCCATGTTGGG	.	79	25	45	0	.	161	C	61859057	T	C	61859057	3	2	146	1	0	0	0	0	1	0	0	0	3116	1464	51	2	1737	2	CDH8	16	61859057	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	56915502	61859057	28495696	104	18964											
WWP2	11060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69965734	69965734	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WWP2	NM_001270454	exon16	c.C1623T	p.R541R	CCTGCGCCGCCGG	.	23	13	32	0	.	658	T	69965734	C	T	69965734	2	4	146	1	0	0	0	0	0	0	0	1	17413	726	26	3		3	WWP2	16	69965734	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	8106677	69965734	20389019	105	18965											
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77329000	77329000	+	Silent	SNP	T	T	C	rs142130362		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADAMTS18	NM_199355	exon19	c.A2826G	p.T942T	GCTGCATGTACTC	.	29	4	38	0	T|1.000;C|0.000	1036	C	77329000	T	C	77329000	2	2	146	1	0	0	0	0	0	0	0	1	263	1451	51	2		2	ADAMTS18	16	77329000	Silent	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	7363266	77329000	13025753	106	18966											
ACSF3	197322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89167289	89167289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ACSF3	NM_174917	exon3	c.C200T	p.T67M	GCCACACGTACAG	.	13	6	45	0	.	68	T	89167289	C	T	89167289	3	4	146	1	0	0	0	0	1	0	0	0	176	536	19	1	202	1	ACSF3	16	89167289	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	11838289	89167289	1187464	107	18967											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	61	35	79	0	.	70225	C	7578271	T	C	7578271	3	2	146	1	0	0	0	0	1	0	0	0	16378	1464	51	2	716	2	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10		7578271	73616939	108	18968											
SUPT6H	6830	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27027520	27027520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SUPT6H	NM_003170	exon35	c.G4796A	p.S1599N	GCAGCAGTGCTTA	.	30	5	41	0	.	93	A	27027520	G	A	27027520	3	1	146	1	0	0	0	0	1	0	0	0	15397	1029	36	3	4930	3	SUPT6H	17	27027520	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	19449249	27027520	54167690	109	18969											
SEPT4	5414	broad.mit.edu;bcgsc.ca	37	17	56599413	56599413	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEPT4	NM_001256782	exon7	c.C757A	p.R253R	CGTCTCGGAAATA	.	174	9	121	0	.	68	T	56599413	G	T	56599413	2	4	146	1	0	0	0	0	0	0	0	1	14066	1124	39	1		1	SEPT4	17	56599413	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	29571893	56599413	24595797	110	18970											
DDX42	11325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61890756	61890756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DDX42	NM_203499	exon15	c.G1844T	p.R615L	TGGTCCGGAACTT	.	85	23	87	0	.	230	T	61890756	G	T	61890756	3	4	146	1	0	0	0	0	1	0	0	0	4362	1116	39	1	1898	1	DDX42	17	61890756	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	5291343	61890756	19304454	111	18971											
GH2	2689	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61957781	61957781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GH2	NM_002059	exon5	c.A554C	p.N185T	CCGTAGTTCTTGA	.	334	34	307	1	.	93	G	61957781	T	G	61957781	3	3	146	1	0	0	0	0	1	0	0	0	6368	1725	60	5	191	5	GH2	17	61957781	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	67025	61957781	19237429	112	18972											
ENGASE	64772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77077980	77077980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ENGASE	NM_001042573	exon7	c.G873T	p.R291S	TCTCAGGGTCTTC	.	116	37	99	1	.	91	T	77077980	G	T	77077980	3	4	146	1	0	0	0	0	1	0	0	0	5118	1246	43	3	899	3	ENGASE	17	77077980	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	15120199	77077980	4117230	113	18973											
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	745776	745776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	YES1	NM_005433	exon6	c.A656G	p.N219S	CCACCATTGTCAA	.	152	62	103	0	.	547	C	745776	T	C	745776	3	2	146	1	0	0	0	0	1	0	0	0	17471	1493	52	2	1003	2	YES1	18	745776	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10		745776	77331472	114	18974											
EPB41L3	23136	ucsc.edu;bcgsc.ca	37	18	5397364	5397364	+	Missense_Mutation	SNP	G	G	T	rs140230336	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPB41L3	NM_012307	exon18	c.C2534A	p.P845Q	CTAAGCGGCAGGT	.	50	4	44	0	G|0.998;A|0.002	95	T	5397364	G	T	5397364	3	4	146	1	0	0	0	0	1	0	0	0	5154	1116	39	1	749	1	EPB41L3	18	5397364	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	4651588	5397364	72679884	115	18975											
ABCA7	10347	ucsc.edu;bcgsc.ca	37	19	1058628	1058628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA7	NM_019112	exon38	c.T5161C	p.F1721L	AGGCAGTTCCAGT	.	41	5	60	0	.	98	C	1058628	T	C	1058628	3	2	146	1	0	0	0	0	1	0	0	0	37	1725	60	2	5307	2	ABCA7	19	1058628	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10		1058628	58070355	116	18976											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9028261	9028261	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MUC16	NM_024690	exon11	c.C36531T	p.G12177G	GTAGGGGCCCAGC	.	66	15	73	1	.	566	A	9028261	G	A	9028261	2	1	146	1	0	0	0	0	0	0	0	1	9973	1190	42	3		3	MUC16	19	9028261	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	7969633	9028261	50100722	117	18977											
MYO9B	4650	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17317927	17317927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO9B	NM_001130065	exon35	c.C5498T	p.A1833V	GGGTGGCCCTGCT	.	59	16	74	0	.	67	T	17317927	C	T	17317927	3	4	146	1	0	0	0	0	1	0	0	0	10085	739	26	3	5632	3	MYO9B	19	17317927	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	8289666	17317927	41811056	118	18978											
ISYNA1	51477	ucsc.edu;bcgsc.ca	37	19	18545774	18545774	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ISYNA1	NM_016368	exon11	c.C1626A	p.T542T	ATCACCGGTGCAG	.	71	8	116	0	.	92	T	18545774	G	T	18545774	2	4	146	1	0	0	0	0	0	0	0	1	7867	1103	39	1		1	ISYNA1	19	18545774	Silent	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	1227847	18545774	40583209	119	18979											
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23545393	23545393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF91	NM_003430	exon4	c.G388T	p.D130Y	ACTCATCCACACT	.	130	37	104	0	.	90	A	23545393	C	A	23545393	3	1	146	1	0	0	0	0	1	0	0	0	18197	855	30	3	3191	3	ZNF91	19	23545393	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	4999619	23545393	35583590	120	18980											
ATP1A3	478	broad.mit.edu;mdanderson.org	37	19	42489335	42489335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP1A3	NM_001256214	exon8	c.C767T	p.T256M	CGAGCCGTGCCTG	.	23	8	26	1	.	92	A	42489335	G	A	42489335	3	1	146	1	0	0	0	0	1	0	0	0	1130	1145	40	1	2377	1	ATP1A3	19	42489335	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	18943942	42489335	16639648	121	18981											
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51530742	51530742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLK11	NM_144947	exon1	c.A32G	p.K11R	GATGACTTCCAGT	.	31	14	34	0	.	650	C	51530742	T	C	51530742	3	2	146	1	0	0	0	0	1	0	0	0	8399	1609	56	2	915	2	KLK11	19	51530742	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	9041407	51530742	7598241	122	18982											
NAT14	57106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55997777	55997777	+	Silent	SNP	C	C	T	rs201053971		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NAT14	NM_020378	exon3	c.C75T	p.A25A	ACAGGCCGGCGTG	.	21	11	15	0	C|0.999;T|0.000	91	T	55997777	C	T	55997777	2	4	146	1	0	0	0	0	0	0	0	1	10175	639	23	1		1	NAT14	19	55997777	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	4467035	55997777	3131206	123	18983											
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17208109	17208109	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCSK2	NM_002594	exon1	c.C159T	p.H53H	AGAACACGGCTTT	.	86	33	80	0	.	157	T	17208109	C	T	17208109	2	4	146	1	0	0	0	0	0	0	0	1	11601	535	19	1		1	PCSK2	20	17208109	Silent	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10		17208109	45817411	124	18984											
LPIN3	64900	ucsc.edu;bcgsc.ca	37	20	39985684	39985684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LPIN3	NM_022896	exon15	c.G1808A	p.R603H	AGCGGCGCCTGAA	.	25	5	28	0	.	93	A	39985684	G	A	39985684	3	1	146	1	0	0	0	0	1	0	0	0	8920	1087	38	1	1862	1	LPIN3	20	39985684	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	22777575	39985684	23039836	125	18985											
OSBPL2	9885	ucsc.edu;bcgsc.ca	37	20	60847187	60847187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OSBPL2	NM_144498	exon5	c.T265C	p.S89P	GAGCTGTCCAAGA	.	42	5	33	0	.	69	C	60847187	T	C	60847187	3	2	146	1	0	0	0	0	1	0	0	0	11278	1667	58	2	279	2	OSBPL2	20	60847187	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	20861503	60847187	2178333	126	18986											
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33296847	33296847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HUNK	NM_014586	exon2	c.G329A	p.R110Q	TGCGGCGAGAGGG	.	67	18	38	0	.	334	A	33296847	G	A	33296847	3	1	146	1	0	0	0	0	1	0	0	0	7458	1058	37	1	335	1	HUNK	21	33296847	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10		33296847	14833048	127	18987											
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46117591	46117591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP10-12	NM_198699	exon1	c.C475T	p.P159S	TGCAAGCCCATCT	.	107	37	163	0	.	90	T	46117591	C	T	46117591	3	4	146	1	0	0	0	0	1	0	0	0	8508	739	26	3	477	3	KRTAP10-12	21	46117591	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	12820744	46117591	2012304	128	18988											
ARVCF	421	ucsc.edu;bcgsc.ca	37	22	19967280	19967280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARVCF	NM_001670	exon6	c.G1382A	p.R461H	AGCTCACGGACCT	.	44	5	46	0	.	91	T	19967280	C	T	19967280	3	4	146	1	0	0	0	0	1	0	0	0	1003	536	19	1	1562	1	ARVCF	22	19967280	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10		19967280	31337286	129	18989											
PLA2G6	8398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38528998	38528998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLA2G6	NM_003560	exon7	c.G917A	p.R306Q	CAGCCCCGTTTCA	.	39	17	57	0	.	91	T	38528998	C	T	38528998	3	4	146	1	0	0	0	0	1	0	0	0	12008	652	23	1	1547	1	PLA2G6	22	38528998	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	18561718	38528998	12775568	130	18990											
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39883537	39883537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MGAT3	NM_002409	exon2	c.C185A	p.P62H	CCAGCCCCGAGCC	.	47	18	60	0	.	90	A	39883537	C	A	39883537	3	1	146	1	0	0	0	0	1	0	0	0	9544	623	22	3	187	3	MGAT3	22	39883537	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	1354539	39883537	11421029	131	18991											
PPARA	5465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46615711	46615711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPARA	NM_001001928	exon6	c.A511C	p.I171L	CTAGCGATTCGTT	.	43	22	25	0	.	611	C	46615711	A	C	46615711	3	2	146	1	0	0	0	0	1	0	0	0	12297	333	12	5	525	5	PPARA	22	46615711	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	6732174	46615711	4688855	132	18992											
HDAC10	83933	ucsc.edu;bcgsc.ca	37	22	50686155	50686155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HDAC10	NM_032019	exon14	c.T1388C	p.L463P	TACAGGAGCTTCC	.	31	4	50	0	.	226	G	50686155	A	G	50686155	3	3	146	1	0	0	0	0	1	0	0	0	7005	304	11	2	649	2	HDAC10	22	50686155	Missense_Mutation	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10	4070444	50686155	618411	133	18993											
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41555141	41555141	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPR34	NM_001097579	exon3	c.A255G	p.K85K	CCGTAAAAGAAAT	.	105	50	49	0	.	131	G	41555141	A	G	41555141	2	3	146	1	0	0	0	0	0	0	0	1	6689	11	1	2		2	GPR34	23	41555141	Silent	SNP	A	TCGA-G3-A25Z-01A-11D-A16V-10		41555141	113715419	134	18994											
MED12	9968	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	70338632	70338632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MED12	NM_005120	exon1	c.G28C	p.E10Q	AGCTACGAACACC	.	72	54	90	1	.	272	C	70338632	G	C	70338632	3	2	146	1	0	0	0	0	1	0	0	0	9428	1059	37	4	30	4	MED12	23	70338632	Missense_Mutation	SNP	G	TCGA-G3-A25Z-01A-11D-A16V-10	28783491	70338632	84931928	135	18995											
ATP1B4	23439	ucsc.edu;bcgsc.ca	37	X	119509404	119509404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP1B4	NM_001142447	exon5	c.T740C	p.I247T	CCTGCATCCTTCT	.	41	4	30	0	.	131	C	119509404	T	C	119509404	3	2	146	1	0	0	0	0	1	0	0	0	1135	1435	50	2	758	2	ATP1B4	23	119509404	Missense_Mutation	SNP	T	TCGA-G3-A25Z-01A-11D-A16V-10	49170772	119509404	35761156	136	18996											
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128722192	128722192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OCRL	NM_000276	exon21	c.C2293T	p.L765F	GAAGAGCTCCAGC	.	35	28	27	0	.	206	T	128722192	C	T	128722192	3	4	146	1	0	0	0	0	1	0	0	0	10823	797	28	3	2375	3	OCRL	23	128722192	Missense_Mutation	SNP	C	TCGA-G3-A25Z-01A-11D-A16V-10	9212788	128722192	26548368	137	18997											
TMEM51	55092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15541828	15541828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TMEM51	NM_018022	exon2	c.G245A	p.C82Y	CTATCTGCCTGAG	.	36	11	41	0	.	90	A	15541828	G	A	15541828	3	1	147	1	0	0	0	0	1	0	0	0	16174	1319	46	3	247	3	TMEM51	1	15541828	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10		15541828	233708793	1	18998											
ZSWIM5	57643	broad.mit.edu;bcgsc.ca	37	1	45553672	45553672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ZSWIM5	NM_020883	exon2	c.A833G	p.D278G	AGCTGGTCCCTAT	.	142	6	137	0	.	22	C	45553672	T	C	45553672	3	2	147	1	0	0	0	0	1	0	0	0	18241	1667	58	2	2776	2	ZSWIM5	1	45553672	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10	30011844	45553672	203696949	2	18999											
TUFT1	7286	broad.mit.edu;bcgsc.ca	37	1	151546769	151546769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TUFT1	NM_020127	exon8	c.G618C	p.R206S	CCAGAGGGAAGCA	.	143	9	131	0	.	90	C	151546769	G	C	151546769	3	2	147	1	0	0	0	0	1	0	0	0	16769	1223	43	4	648	4	TUFT1	1	151546769	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	105993097	151546769	97703852	3	19000											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	176564726	176564726	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PAPPA2	NM_021936	exon3	c.C1986T	p.P662P	CTCACCCAAGAGG	.	39	14	39	0	.	548	T	176564726	C	T	176564726	2	4	147	1	0	0	0	0	0	0	0	1	11433	581	21	3		3	PAPPA2	1	176564726	Silent	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	25017957	176564726	72685895	4	19001											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235937265	235937265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LYST	NM_000081	exon19	c.A5661T	p.E1887D	AATATCTTCACCA	.	277	87	216	0	.	143	A	235937265	T	A	235937265	3	1	147	1	0	0	0	0	1	0	0	0	9128	1606	56	4	5884	4	LYST	1	235937265	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10	59372539	235937265	13313356	5	19002											
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247875185	247875185	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR6F1	NM_001005286	exon1	c.G873A	p.T291T	ACGAAGCGTATAG	.	61	19	55	0	.	68	T	247875185	C	T	247875185	2	4	147	1	0	0	0	0	0	0	0	1	11201	755	27	1		1	OR6F1	1	247875185	Silent	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	11937920	247875185	1375436	6	19003											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1241722	1241722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SNTG2	NM_018968	exon10	c.C782G	p.T261R	TTTACACAGCCCA	.	37	10	30	0	.	136	G	1241722	C	G	1241722	3	3	147	1	0	0	0	0	1	0	0	0	14875	478	17	4	820	4	SNTG2	2	1241722	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		1241722	241957651	7	19004											
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	36739445	36739445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CRIM1	NM_016441	exon10	c.G1688A	p.R563H	TCTGTCGCTGTAA	.	144	7	129	0	.	118	A	36739445	G	A	36739445	3	1	147	1	0	0	0	0	1	0	0	0	3873	1087	38	1	1726	1	CRIM1	2	36739445	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	35497723	36739445	206459928	8	19005											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37306331	37306331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HEATR5B	NM_019024	exon3	c.G270T	p.Q90H	AAGTGTCTGAAAA	.	155	51	139	0	.	142	A	37306331	C	A	37306331	3	1	147	1	0	0	0	0	1	0	0	0	7032	912	32	3	6081	3	HEATR5B	2	37306331	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	566886	37306331	205893042	9	19006											
SLC9A2	6549	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	103317675	103317675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SLC9A2	NM_003048	exon8	c.C1733T	p.T578I	TCCCTACATTTGC	.	180	23	147	0	.	157	T	103317675	C	T	103317675	3	4	147	1	0	0	0	0	1	0	0	0	14712	478	17	3	1763	3	SLC9A2	2	103317675	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	66011344	103317675	139881698	10	19007											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	228884827	228884827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SPHKAP	NM_030623	exon7	c.A743T	p.Q248L	TTTAGCTGTTTAC	.	177	52	134	0	.	167	A	228884827	T	A	228884827	3	1	147	1	0	0	0	0	1	0	0	0	15047	1580	55	4	4383	4	SPHKAP	2	228884827	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10	125567152	228884827	14314546	11	19008											
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52383278	52383278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DNAH1	NM_015512	exon14	c.A2368G	p.K790E	CGGGAGAAGGAGA	.	97	5	95	0	.	67	G	52383278	A	G	52383278	3	3	147	1	0	0	0	0	1	0	0	0	4597	247	9	2	2418	2	DNAH1	3	52383278	Missense_Mutation	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10		52383278	145639152	12	19009											
SHQ1	55164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	72890225	72890225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SHQ1	NM_018130	exon4	c.T457A	p.L153I	ATCGTAAGTTTCC	.	153	59	132	0	.	137	T	72890225	A	T	72890225	3	4	147	1	0	0	0	0	1	0	0	0	14292	69	3	4	1308	4	SHQ1	3	72890225	Missense_Mutation	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10	20506947	72890225	125132205	13	19010											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130354582	130354582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	COL6A6	NM_001102608	exon27	c.C5068A	p.L1690M	ACTGGGCTGAAGG	.	58	25	53	0	.	76	A	130354582	C	A	130354582	3	1	147	1	0	0	0	0	1	0	0	0	3703	796	28	3	5174	3	COL6A6	3	130354582	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	57464357	130354582	67667848	14	19011											
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134366278	134366278	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KY	NM_178554	exon2	c.C198T	p.H66H	TTTACCGTGAAAG	.	62	16	76	0	.	24	A	134366278	G	A	134366278	2	1	147	1	0	0	0	0	0	0	0	1	8586	1159	40	1		1	KY	3	134366278	Silent	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	4011696	134366278	63656152	15	19012											
PSMD2	5708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184020202	184020202	+	Missense_Mutation	SNP	G	G	A	rs11545182	alternate_allele	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PSMD2	NM_002808	exon6	c.G749A	p.R250H	TACTGCGTTGTGC	.	111	31	111	0	G|1.000;|0.000	90	A	184020202	G	A	184020202	3	1	147	1	0	0	0	0	1	0	0	0	12698	1145	40	1	771	1	PSMD2	3	184020202	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	49653924	184020202	14002228	16	19013											
MFSD8	256471	broad.mit.edu;bcgsc.ca	37	4	128842751	128842751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MFSD8	NM_152778	exon12	c.A1278G	p.I426M	TAATCCTATTAGC	.	122	6	149	0	.	92	C	128842751	T	C	128842751	3	2	147	1	0	0	0	0	1	0	0	0	9538	1512	53	2	286	2	MFSD8	4	128842751	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10		128842751	62311525	17	19014											
USP38	84640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	144135683	144135683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP38	NM_032557	exon9	c.T2554C	p.S852P	GGTATATCCTCTG	.	133	6	103	0	.	660	C	144135683	T	C	144135683	3	2	147	1	0	0	0	0	1	0	0	0	17066	1435	50	2	2588	2	USP38	4	144135683	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10	15292932	144135683	47018593	18	19015											
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144135888	144135888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP38	NM_032557	exon9	c.G2759T	p.R920I	ACAGTAGAGTGAC	.	217	76	172	0	.	660	T	144135888	G	T	144135888	3	4	147	1	0	0	0	0	1	0	0	0	17066	942	33	3	2793	3	USP38	4	144135888	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	205	144135888	47018388	19	19016											
GAB1	2549	broad.mit.edu;bcgsc.ca	37	4	144359739	144359739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GAB1	NM_207123	exon4	c.A1181G	p.N394S	ATTTAAACAAATT	.	83	4	71	0	.	1146	G	144359739	A	G	144359739	3	3	147	1	0	0	0	0	1	0	0	0	6148	43	2	2	1195	2	GAB1	4	144359739	Missense_Mutation	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10	223851	144359739	46794537	20	19017											
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	192439	192439	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LRRC14B	NM_001080478	exon1	c.C786T	p.D262D	TCCCGACGGCGAG	.	69	21	76	0	.	69	T	192439	C	T	192439	2	4	147	1	0	0	0	0	0	0	0	1	8969	535	19	1		1	LRRC14B	5	192439	Silent	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		192439	180722821	21	19018											
EXOC3	11336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	462403	462403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EXOC3	NM_007277	exon9	c.A1634G	p.E545G	TGGAGGAGGTCTT	.	89	11	90	0	.	90	G	462403	A	G	462403	3	3	147	1	0	0	0	0	1	0	0	0	5303	304	11	2	1664	2	EXOC3	5	462403	Missense_Mutation	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10	269964	462403	180452857	22	19019											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12121666	12121666	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HIVEP1	NM_002114	exon4	c.G1638A	p.L546L	CTTTTTGCTACAG	.	65	21	62	0	.	139	A	12121666	G	A	12121666	2	1	147	1	0	0	0	0	0	0	0	1	7186	1310	46	3		3	HIVEP1	6	12121666	Silent	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10		12121666	158993401	23	19020											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30673414	30673414	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MDC1	NM_014641	exon10	c.C3546T	p.P1182P	AGATGTGGGCTCA	.	265	82	240	0	.	273	A	30673414	G	A	30673414	2	1	147	1	0	0	0	0	0	0	0	1	9403	1335	47	3		3	MDC1	6	30673414	Silent	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	18551748	30673414	140441653	24	19021											
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32130607	32130607	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PPT2	NM_138717	exon9	c.G807A	p.G269G	TTTTGGGTTGAAG	.	142	37	140	0	.	44	A	32130607	G	A	32130607	2	1	147	1	0	0	0	0	0	0	0	1	12412	1248	44	3		3	PPT2	6	32130607	Silent	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	1457193	32130607	138984460	25	19022											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65612308	65612308	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EYS	NM_001142800	exon17	c.C2727T	p.V909V	ATTGTTGACCATA	.	109	43	103	0	.	660	A	65612308	G	A	65612308	2	1	147	1	0	0	0	0	0	0	0	1	5332	1277	45	3		3	EYS	6	65612308	Silent	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	33481701	65612308	105502759	26	19023											
MOSPD3	64598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100211234	100211234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MOSPD3	NM_001040098	exon4	c.C416T	p.A139V	CCCCAGCGTACCC	.	66	25	54	0	.	92	T	100211234	C	T	100211234	3	4	147	1	0	0	0	0	1	0	0	0	9717	768	27	1	426	1	MOSPD3	7	100211234	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		100211234	58927429	27	19024											
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145580146	145580146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FBXL6	NM_012162	exon7	c.C1039G	p.R347G	CCCCTCGTCCCGG	.	75	25	70	0	.	658	C	145580146	G	C	145580146	3	2	147	1	0	0	0	0	1	0	0	0	5723	1153	40	4	592	4	FBXL6	8	145580146	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10		145580146	783876	28	19025											
SPAG8	26206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35810300	35810300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SPAG8	NM_001039592	exon6	c.G1207C	p.D403H	GGTAGTCGTGAGG	.	67	21	86	0	.	91	G	35810300	C	G	35810300	3	3	147	1	0	0	0	0	1	0	0	0	14984	884	31	4	509	4	SPAG8	9	35810300	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		35810300	105403131	29	19026											
GRIN1	2902	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	140057102	140057102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GRIN1	NM_001185091	exon15	c.A1987G	p.I663V	GCCATGATCATCG	.	25	11	19	0	.	187	G	140057102	A	G	140057102	3	3	147	1	0	0	0	0	1	0	0	0	6778	333	12	2	2045	2	GRIN1	9	140057102	Missense_Mutation	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10	104246802	140057102	1156329	30	19027											
AKR1C2	1646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	5043738	5043738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	AKR1C2	NM_001354	exon4	c.G220A	p.V74M	TCTTCACACTGCC	.	241	15	214	1	.	514	T	5043738	C	T	5043738	3	4	147	1	0	0	0	0	1	0	0	0	470	478	17	3	838	3	AKR1C2	10	5043738	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		5043738	130491009	31	19028											
PHYHIPL	84457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61005153	61005174	+	Frame_Shift_Del	DEL	GACCTGTACAGAAGAAGATGGG	GACCTGTACAGAAGAAGATGGG	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GACCTGTACAGAAGAAGATGGG	GACCTGTACAGAAGAAGATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PHYHIPL	NM_032439	exon5	c.933_954del	p.311_318del	ATTTTTGACCTGT	.	90	12	130	0	.	90	-	61005174	GACCTGTACAGAAGAAGATGGG	-	61005153	7	5	147	1	0	1	0	1	0	0	0	0	11867	1281	45	0	983	0	PHYHIPL	10	61005153	Frame_Shift_Del	DEL	GACCTGTACAGAAGAAGATGGG	TCGA-G3-A3CH-01A-11D-A22F-10	55961415	61005153	74529594	32	19029											
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121342007	121342008	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.242_243del	p.81_81del	AGCTAATGCAGCA	.	152	46	163	0	.	91	-	121342008	TG	-	121342007	7	5	147	1	0	1	0	1	0	0	0	0	15886	1451	51	0	975	0	TIAL1	10	121342007	Frame_Shift_Del	DEL	TG	TCGA-G3-A3CH-01A-11D-A22F-10	60336854	121342007	14192740	33	19030	106	2									
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121342010	121342010	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.240delT	p.A80fs	TAATGCAGCAGCT	.	153	46	163	0	.	91	-	121342010	A	-	121342010	7	5	147	1	0	1	0	1	0	0	0	0	15886	175	7	0	978	0	TIAL1	10	121342010	Frame_Shift_Del	DEL	A	TCGA-G3-A3CH-01A-11D-A22F-10	3	121342010	14192737	34	19031	106	2									
OR51I1	390063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5462320	5462320	+	Missense_Mutation	SNP	C	C	T	rs138548705		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR51I1	NM_001005288	exon1	c.G425A	p.R142H	AATATACGGTTGT	.	92	36	83	1	C|1.000;T|0.000	69	T	5462320	C	T	5462320	3	4	147	1	0	0	0	0	1	0	0	0	11100	536	19	1	523	1	OR51I1	11	5462320	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		5462320	129544196	35	19032											
LYVE1	10894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10580711	10580711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LYVE1	NM_006691	exon6	c.G916A	p.E306K	TGGACTCTTCTGG	.	344	104	327	0	.	515	T	10580711	C	T	10580711	3	4	147	1	0	0	0	0	1	0	0	0	9129	922	32	3	56	3	LYVE1	11	10580711	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	5118391	10580711	124425805	36	19033											
TCIRG1	10312	broad.mit.edu;mdanderson.org	37	11	67811701	67811701	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TCIRG1	NM_006019	exon9	c.C910T	p.L304L	GTGTACCTGGCCC	.	8	2	15	0	.	227	T	67811701	C	T	67811701	2	4	147	1	0	0	0	0	0	0	0	1	15700	680	24	3		3	TCIRG1	11	67811701	Silent	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	57230990	67811701	67194815	37	19034											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88478474	88478474	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CEP290	NM_025114	exon35	c.T4593G	p.S1531S	GTGGTGAGATTTT	.	178	62	151	0	.	96	C	88478474	A	C	88478474	2	2	147	1	0	0	0	0	0	0	0	1	3253	291	11	5		5	CEP290	12	88478474	Silent	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10		88478474	45373421	38	19035											
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101333093	101333093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ANO4	NM_178826	exon3	c.T56A	p.V19E	TTCTAGTGGCCAA	.	171	37	165	0	.	96	A	101333093	T	A	101333093	3	1	147	1	0	0	0	0	1	0	0	0	699	1710	59	4	62	4	ANO4	12	101333093	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10	12854619	101333093	32518802	39	19036											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954378	48954378	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	RB1,NS,carcinoma,0	RB1	NM_000321	exon16	c.1498+1G>-	.	ATAGCAGTAAGTT	.	107	55	117	0	.	3784	-	48954378	G	-	48954378	8	5	147	1	0	1	0	1	0	0	1	0	13098	1043	36	0	1561	0	RB1	13	48954378	Splice_Site	DEL	G	TCGA-G3-A3CH-01A-11D-A22F-10		48954378	66215500	40	19037											
ADSSL1	122622	ucsc.edu;bcgsc.ca	37	14	105196358	105196358	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ADSSL1	NM_199165	exon1	c.T129C	p.S43S	AAGGAGTCTCCAG	.	48	5	48	1	.	515	C	105196358	T	C	105196358	2	2	147	1	0	0	0	0	0	0	0	1	348	1664	58	2		2	ADSSL1	14	105196358	Silent	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10		105196358	2153182	41	19038											
MEX3B	84206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82336764	82336765	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	p.G149E	CACCGCGCCGTTG	.	30	17	60	0	.	.	TT	82336765	GC	TT	82336764	3	4	147	1	0	0	0	0	1	0	0	0	9510	1074	38	1	1266	1	MEX3B	15	82336764	Missense_Mutation	DNP	GC	TCGA-G3-A3CH-01A-11D-A22F-10		82336764	20194628	42	19039											
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3543984	3543984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001080524	exon3	c.C404T	p.S135F	GAACTGGAAGCTG	.	21	8	22	0	.	.	A	3543984	G	A	3543984	3	1	147	1	0	0	0	0	1	0	0	0	1843	1174	41	3	148	3	C16orf90	16	3543984	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10		3543984	86810769	43	19040											
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	50357553	50357553	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	BRD7	NM_013263	exon12	c.T1388A	p.L463X	TCCAGTAAACTAT	.	103	55	107	0	.	90	T	50357553	A	T	50357553	4	4	147	1	0	0	0	0	0	1	0	0	1505	372	13	4	594	4	BRD7	16	50357553	Nonsense_Mutation	SNP	A	TCGA-G3-A3CH-01A-11D-A22F-10	46813569	50357553	39997200	44	19041											
BCL2	596	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	60795937	60795937	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	BCL2	NM_000633	exon3	c.G641A	p.W214X	GACAGCCAGGAGA	.	96	36	76	0	.	1271	T	60795937	C	T	60795937	4	4	147	1	0	0	0	0	0	1	0	0	1365	595	21	3	82	3	BCL2	18	60795937	Nonsense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10		60795937	17281311	45	19042											
OR1I1	126370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15198366	15198366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR1I1	NM_001004713	exon1	c.G490A	p.A164T	CTCATGGCTCAAC	.	69	9	88	0	.	71	A	15198366	G	A	15198366	3	1	147	1	0	0	0	0	1	0	0	0	10958	1203	42	3	492	3	OR1I1	19	15198366	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10		15198366	43930617	46	19043											
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18368567	18368567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KIAA1683	NM_001145304	exon4	c.G3527A	p.R1176H	TCCCGGCGGGTGC	.	11	4	40	0	.	92	T	18368567	C	T	18368567	3	4	147	1	0	0	0	0	1	0	0	0	8251	768	27	1	580	1	KIAA1683	19	18368567	Missense_Mutation	SNP	C	TCGA-G3-A3CH-01A-11D-A22F-10	3170201	18368567	40760416	47	19044											
ZNF234	10780	broad.mit.edu;bcgsc.ca	37	19	44660620	44660620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_006630	exon6	c.G451T	p.D151Y	CAATGTGATGAGT	.	214	12	224	1	.	.	T	44660620	G	T	44660620	3	4	147	1	0	0	0	0	1	0	0	0	17784	1290	45	3	465	3	ZNF234	19	44660620	Missense_Mutation	SNP	G	TCGA-G3-A3CH-01A-11D-A22F-10	26292053	44660620	14468363	48	19045											
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43529725	43529725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	UMODL1	NM_173568	exon10	c.T1573A	p.C525S	GCCTGGTGCATCA	.	14	8	24	0	.	93	A	43529725	T	A	43529725	3	1	147	1	0	0	0	0	1	0	0	0	16977	1696	59	4	1611	4	UMODL1	21	43529725	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10		43529725	4600170	49	19046											
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu	37	X	78010878	78010878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LPAR4	NM_005296	exon2	c.T512C	p.I171T	GCGGTATTTCAGC	.	88	4	75	0	.	133	C	78010878	T	C	78010878	3	2	147	1	0	0	0	0	1	0	0	0	8907	1493	52	2	514	2	LPAR4	23	78010878	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10		78010878	77259682	50	19047											
FMR1	2332	broad.mit.edu;bcgsc.ca	37	X	147018119	147018119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FMR1	NM_002024	exon10	c.T977C	p.V326A	AAAATGTTCCACA	.	142	6	109	0	.	133	C	147018119	T	C	147018119	3	2	147	1	0	0	0	0	1	0	0	0	5960	1725	60	2	1015	2	FMR1	23	147018119	Missense_Mutation	SNP	T	TCGA-G3-A3CH-01A-11D-A22F-10	69007241	147018119	8252441	51	19048											
PPAP2B	8613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	56989987	56989987	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PPAP2B	NM_003713	exon3	c.C537T	p.Y179Y	GCATCTGTAGTTC	.	118	23	232	0	.	91	A	56989987	G	A	56989987	2	1	148	1	0	0	0	0	0	0	0	1	12291	1372	48	3		3	PPAP2B	1	56989987	Silent	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10		56989987	192260634	1	19049											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207787833	207787833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CR1	NM_000651	exon40	c.A6660C	p.E2220D	GTGTGAACGTGAG	.	143	27	201	0	.	93	C	207787833	A	C	207787833	3	2	148	1	0	0	0	0	1	0	0	0	3840	57	2	5	6818	5	CR1	1	207787833	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10	150797846	207787833	41462788	2	19050											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21249790	21249790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	APOB	NM_000384	exon15	c.T2114C	p.F705S	TTCCCAAAAAGAG	.	140	22	239	0	.	175	G	21249790	A	G	21249790	3	3	148	1	0	0	0	0	1	0	0	0	785	14	1	2	11637	2	APOB	2	21249790	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10		21249790	221949583	3	19051											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84972221	84972221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DNAH6	NM_001370	exon63	c.A10360G	p.I3454V	ACTTATATTAACC	.	79	22	122	0	.	69	G	84972221	A	G	84972221	3	3	148	1	0	0	0	0	1	0	0	0	4605	449	16	2	10606	2	DNAH6	2	84972221	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10	63722431	84972221	158227152	4	19052											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	152466364	152466364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NEB	NM_001271208	exon81	c.G12289C	p.D4097H	TAATGTCGTTTTG	.	111	9	132	0	.	145	G	152466364	C	G	152466364	3	3	148	1	0	0	0	0	1	0	0	0	10302	884	31	4	13805	4	NEB	2	152466364	Missense_Mutation	SNP	C	TCGA-G3-A3CI-01A-11D-A20W-10	67494143	152466364	90733009	5	19053											
NCEH1	57552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172365871	172365871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NCEH1	NM_020792	exon2	c.C268T	p.H90Y	GCAGGTGATGGCT	.	81	16	149	0	.	90	A	172365871	G	A	172365871	3	1	148	1	0	0	0	0	1	0	0	0	10215	1290	45	3	1094	3	NCEH1	3	172365871	Missense_Mutation	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10		172365871	25656559	6	19054											
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	168189663	168189663	+	Silent	SNP	G	G	A	rs187066924		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLIT3	NM_001271946	exon15	c.C1491T	p.S497S	GCACTCGCTGCTG	.	56	10	120	1	G|0.999;A|0.000	95	A	168189663	G	A	168189663	2	1	148	1	0	0	0	0	0	0	0	1	14741	1078	38	1		1	SLIT3	5	168189663	Silent	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10		168189663	12725597	7	19055											
CD2AP	23607	ucsc.edu;bcgsc.ca	37	6	47576858	47576858	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CD2AP	NM_012120	exon16	c.1633-1G>A	.	TTTTCAGCCATCT	.	43	4	55	0	.	92	A	47576858	G	A	47576858	5	1	148	1	0	0	0	0	0	0	1	0	2994	985	34	3	1694	3	CD2AP	6	47576858	Splice_Site	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10		47576858	123538209	8	19056											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134053778	134053778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NUP214	NM_005085	exon24	c.A3400G	p.T1134A	CCTGCAACCCCTT	.	53	18	88	0	.	1131	G	134053778	A	G	134053778	3	3	148	1	0	0	0	0	1	0	0	0	10762	43	2	2	3494	2	NUP214	9	134053778	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10		134053778	7159653	9	19057											
ARL5B	221079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18964121	18964121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ARL5B	NM_178815	exon6	c.G516A	p.M172I	GTGGATGACCTCC	.	109	22	172	0	.	228	A	18964121	G	A	18964121	3	1	148	1	0	0	0	0	1	0	0	0	940	1290	45	3	538	3	ARL5B	10	18964121	Missense_Mutation	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10		18964121	116570626	10	19058											
CYP17A1	1586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104597036	104597036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CYP17A1	NM_000102	exon1	c.C83A	p.P28H	CTCTTGGGGTACT	.	58	15	107	1	.	90	T	104597036	G	T	104597036	3	4	148	1	0	0	0	0	1	0	0	0	4147	1232	43	3	1475	3	CYP17A1	10	104597036	Missense_Mutation	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10	85632915	104597036	30937711	11	19059											
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64367214	64367214	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLC22A12	NM_144585	exon7	c.C1137T	p.F379F	CATCTTCCTGCTC	.	120	27	304	0	.	91	T	64367214	C	T	64367214	2	4	148	1	0	0	0	0	0	0	0	1	14443	854	30	3		3	SLC22A12	11	64367214	Silent	SNP	C	TCGA-G3-A3CI-01A-11D-A20W-10		64367214	70639302	12	19060											
CNTN5	53942	ucsc.edu;bcgsc.ca	37	11	100170074	100170074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CNTN5	NM_001243270	exon19	c.A2566G	p.N856D	TATAACAATAAAG	.	36	4	53	0	.	366	G	100170074	A	G	100170074	3	3	148	1	0	0	0	0	1	0	0	0	3644	130	5	2	2636	2	CNTN5	11	100170074	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10	35802860	100170074	34836442	13	19061											
ITPR2	3709	ucsc.edu;bcgsc.ca	37	12	26808682	26808682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ITPR2	NM_002223	exon20	c.T2548C	p.F850L	AAGGAAAGGGCTG	.	45	4	31	0	.	542	G	26808682	A	G	26808682	3	3	148	1	0	0	0	0	1	0	0	0	7921	72	3	2	5709	2	ITPR2	12	26808682	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10		26808682	107043213	14	19062											
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24802167	24802167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ADCY4	NM_001198592	exon3	c.A187G	p.T63A	CAGTGGTCAGGAA	.	63	12	174	0	.	93	C	24802167	T	C	24802167	3	2	148	1	0	0	0	0	1	0	0	0	296	1667	58	2	3142	2	ADCY4	14	24802167	Missense_Mutation	SNP	T	TCGA-G3-A3CI-01A-11D-A20W-10		24802167	82547373	15	19063											
SMOC1	64093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70490056	70490056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SMOC1	NM_001034852	exon11	c.G1183A	p.A395T	AAGAAAGCCAAGC	.	100	19	195	0	.	92	A	70490056	G	A	70490056	3	1	148	1	0	0	0	0	1	0	0	0	14801	971	34	3	1225	3	SMOC1	14	70490056	Missense_Mutation	SNP	G	TCGA-G3-A3CI-01A-11D-A20W-10	45687889	70490056	36859484	16	19064											
PKD1	5310	ucsc.edu;bcgsc.ca	37	16	2162836	2162836	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PKD1	NM_000296	exon13	c.A3114G	p.A1038A	CGTCAGTGCTAGC	.	23	4	45	0	.	91	C	2162836	T	C	2162836	2	2	148	1	0	0	0	0	0	0	0	1	11963	1683	59	2		2	PKD1	16	2162836	Silent	SNP	T	TCGA-G3-A3CI-01A-11D-A20W-10		2162836	88191917	17	19065											
OR1E2	8388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3336389	3336389	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	OR1E2	NM_003554	exon1	c.T747A	p.T249T	GCCACAAGTAGAG	.	119	23	178	0	.	131	T	3336389	A	T	3336389	2	4	148	1	0	0	0	0	0	0	0	1	10955	59	3	4		4	OR1E2	17	3336389	Silent	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10		3336389	77858821	18	19066											
KDM6B	23135	ucsc.edu;bcgsc.ca	37	17	7752833	7752833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	KDM6B	NM_001080424	exon11	c.A3227G	p.E1076G	CTCGGGAGGAAGC	.	68	6	81	0	.	205	G	7752833	A	G	7752833	3	3	148	1	0	0	0	0	1	0	0	0	8138	304	11	2	3257	2	KDM6B	17	7752833	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10	4416444	7752833	73442377	19	19067											
ANKRD30B	374860	ucsc.edu;bcgsc.ca	37	18	14752857	14752857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ANKRD30B	NM_001145029	exon3	c.A356G	p.E119G	AGAGGGAGGCTTG	.	43	5	58	0	.	24	G	14752857	A	G	14752857	3	3	148	1	0	0	0	0	1	0	0	0	659	304	11	2	366	2	ANKRD30B	18	14752857	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10		14752857	63324391	20	19068											
ESCO1	114799	ucsc.edu;bcgsc.ca	37	18	19147982	19147982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ESCO1	NM_052911	exon5	c.T1604C	p.L535P	TGACTGAGCAGAG	.	35	4	76	0	.	90	G	19147982	A	G	19147982	3	3	148	1	0	0	0	0	1	0	0	0	5248	304	11	2	950	2	ESCO1	18	19147982	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10	4395125	19147982	58929266	21	19069											
GRIN3B	116444	ucsc.edu;bcgsc.ca	37	19	1004833	1004833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GRIN3B	NM_138690	exon3	c.T1333C	p.C445R	CAGCTGTGCCTGG	.	32	4	76	0	.	90	C	1004833	T	C	1004833	3	2	148	1	0	0	0	0	1	0	0	0	6784	1696	59	2	1343	2	GRIN3B	19	1004833	Missense_Mutation	SNP	T	TCGA-G3-A3CI-01A-11D-A20W-10		1004833	58124150	22	19070											
FBN3	84467	broad.mit.edu;bcgsc.ca	37	19	8201395	8201395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FBN3	NM_032447	exon10	c.A1222G	p.T408A	CAATGGTCTGGTT	.	121	8	212	0	.	100	C	8201395	T	C	8201395	3	2	148	1	0	0	0	0	1	0	0	0	5704	1667	58	2	7423	2	FBN3	19	8201395	Missense_Mutation	SNP	T	TCGA-G3-A3CI-01A-11D-A20W-10	7196562	8201395	50927588	23	19071											
USP29	57663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57640050	57640050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	USP29	NM_020903	exon4	c.T7A	p.S3T	ATGATATCTCTAA	.	75	17	173	0	.	661	A	57640050	T	A	57640050	3	1	148	1	0	0	0	0	1	0	0	0	17056	1435	50	4	9	4	USP29	19	57640050	Missense_Mutation	SNP	T	TCGA-G3-A3CI-01A-11D-A20W-10	49438655	57640050	1488933	24	19072											
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45833800	45833800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	TRPM2	NM_003307	exon20	c.A2989T	p.S997C	CACTGCAGCCCCA	.	83	16	163	0	.	92	T	45833800	A	T	45833800	3	4	148	1	0	0	0	0	1	0	0	0	16583	188	7	4	3067	4	TRPM2	21	45833800	Missense_Mutation	SNP	A	TCGA-G3-A3CI-01A-11D-A20W-10		45833800	2296095	25	19073											
GCLM	2730	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94354636	94354636	+	Silent	SNP	C	C	T	rs79501187	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCLM	NM_002061	exon7	c.G735A	p.L245L	TAGCCACAGCGGC	.	91	32	163	1	C|0.996;G|0.004	91	T	94354636	C	T	94354636	2	4	149	1	0	0	0	0	0	0	0	1	6296	465	17	3		3	GCLM	1	94354636	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		94354636	154895985	1	19074											
HIST2H2AC	8338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858905	149858905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST2H2AC	NM_003517	exon1	c.A381G	p.K127K	AGCCAAAAGCAAA	.	394	78	281	0	.	92	G	149858905	A	G	149858905	2	3	149	1	0	0	0	0	0	0	0	1	7178	11	1	2		2	HIST2H2AC	1	149858905	Silent	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	55504269	149858905	99391716	2	19075											
KCNK2	3776	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215297991	215297991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK2	NM_001017425	exon3	c.A373G	p.I125V	GCAGCAATAAATG	.	391	106	310	0	.	90	G	215297991	A	G	215297991	3	3	149	1	0	0	0	0	1	0	0	0	8066	101	4	2	426	2	KCNK2	1	215297991	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	65439086	215297991	33952630	3	19076											
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228560756	228560756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OBSCN	NM_001271223	exon105	c.C25148G	p.S8383C	ACATCTCCCGGAT	.	184	40	125	0	.	403	G	228560756	C	G	228560756	3	3	149	1	0	0	0	0	1	0	0	0	10812	855	30	4	23857	4	OBSCN	1	228560756	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	13262765	228560756	20689865	4	19077											
PCNXL2	80003	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	233334767	233334767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNXL2	NM_014801	exon15	c.G2984T	p.G995V	GTTATCCCAGACA	.	478	312	398	0	.	91	A	233334767	C	A	233334767	3	1	149	1	0	0	0	0	1	0	0	0	11592	623	22	3	3509	3	PCNXL2	1	233334767	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	4774011	233334767	15915854	5	19078											
APOB	338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	21235238	21235238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOB	NM_000384	exon26	c.A4502G	p.Y1501C	AGGCCATATGTGC	.	192	78	260	0	.	175	C	21235238	T	C	21235238	3	2	149	1	0	0	0	0	1	0	0	0	785	1406	49	2	9205	2	APOB	2	21235238	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10		21235238	221964135	6	19079											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	24042637	24042637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_001242338	exon17	c.2247delA	p.K749fs	GTAGGGTTTATGT	.	86	23	120	0	.	68	-	24042637	T	-	24042637	7	5	149	1	0	1	0	1	0	0	0	0	1072	1722	60	0	2177	0	ATAD2B	2	24042637	Frame_Shift_Del	DEL	T	TCGA-G3-A3CJ-01A-11D-A20W-10	2807399	24042637	219156736	7	19080											
CCDC88A	55704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55536323	55536323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC88A	NM_018084	exon24	c.T4147G	p.F1383V	CATAAAATTTGTA	.	195	83	187	0	.	94	C	55536323	A	C	55536323	3	2	149	1	0	0	0	0	1	0	0	0	2863	101	4	5	1504	5	CCDC88A	2	55536323	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	31493686	55536323	187663050	8	19081											
IMMT	10989	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	86385804	86385804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IMMT	NM_006839	exon10	c.A1073G	p.Y358C	TCATGATACTGAG	.	137	58	173	0	.	91	C	86385804	T	C	86385804	3	2	149	1	0	0	0	0	1	0	0	0	7718	1406	49	2	1227	2	IMMT	2	86385804	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	30849481	86385804	156813569	9	19082											
PLEKHB2	55041	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131884342	131884342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHB2	NM_001267062	exon4	c.A276G	p.E92E	TGCAGAAAGCACA	.	94	36	102	0	.	92	G	131884342	A	G	131884342	2	3	149	1	0	0	0	0	0	0	0	1	12065	11	1	2		2	PLEKHB2	2	131884342	Silent	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	45498538	131884342	111315031	10	19083											
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	135985575	135985575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB3	NM_032143	exon14	c.A1965G	p.I655M	GCTATCTATTTGC	.	104	37	92	0	.	658	C	135985575	T	C	135985575	3	2	149	1	0	0	0	0	1	0	0	0	18221	1512	53	2	1306	2	ZRANB3	2	135985575	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	4101233	135985575	107213798	11	19084											
THSD7B	80731	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138413197	138413197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THSD7B	.	.	.	.	GACAGCATCCTGA	.	192	76	285	0	.	75	G	138413197	A	G	138413197	3	3	149	1	0	0	0	0	1	0	0	0	15877	217	8	2	4066	2	THSD7B	2	138413197	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	2427622	138413197	104786176	12	19085											
PKP4	8502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	159499020	159499020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP4	NM_001005476	exon11	c.A1718G	p.K573R	GAATCAAGCATCT	.	126	43	130	0	.	97	G	159499020	A	G	159499020	3	3	149	1	0	0	0	0	1	0	0	0	11987	72	3	2	1756	2	PKP4	2	159499020	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	21085823	159499020	83700353	13	19086											
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	303	112	491	0	G|1.000;T|0.000	24361	T	41266104	G	T	41266104	3	4	149	1	0	0	0	0	1	0	0	0	4016	1174	41	3	107	3	CTNNB1	3	41266104	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10		41266104	156756326	14	19087											
COL7A1	1294	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48608294	48608294	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL7A1	NM_000094	exon94	c.G7272A	p.R2424R	CCTCACCCGCTCT	.	173	74	210	0	.	160	T	48608294	C	T	48608294	2	4	149	1	0	0	0	0	0	0	0	1	3704	637	22	3		3	COL7A1	3	48608294	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	7342190	48608294	149414136	15	19088											
MED12L	116931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151107817	151107817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED12L	NM_053002	exon36	c.C5397A	p.I1799I	GCCTATCTCCTCC	.	86	32	166	0	.	576	A	151107817	C	A	151107817	2	1	149	1	0	0	0	0	0	0	0	1	9429	903	32	3		3	MED12L	3	151107817	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	102499523	151107817	46914613	16	19089											
TLR1	7096	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799868	38799868	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR1	NM_003263	exon4	c.G585C	p.V195V	GGGGAACACAATG	.	146	62	190	0	.	524	G	38799868	C	G	38799868	2	3	149	1	0	0	0	0	0	0	0	1	15946	465	17	4		4	TLR1	4	38799868	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		38799868	152354408	17	19090											
POLR2B	5431	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57883331	57883331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2B	NM_000938	exon15	c.A2078G	p.Y693C	CCACATATACACA	.	357	153	440	1	.	92	G	57883331	A	G	57883331	3	3	149	1	0	0	0	0	1	0	0	0	12215	449	16	2	2136	2	POLR2B	4	57883331	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	19083463	57883331	133270945	18	19091											
ALB	213	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74282071	74282071	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALB	NM_000477	exon10	c.1289+1G>A	.	GAATGCGTAAGTA	.	113	43	118	0	.	96	A	74282071	G	A	74282071	5	1	149	1	0	0	0	0	0	0	1	0	486	1159	40	1	1328	1	ALB	4	74282071	Splice_Site	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	16398740	74282071	116872205	19	19092											
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87735675	87735675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN13	NM_080685	exon48	c.C7444A	p.Q2482K	GAAGAGCAAAAAC	.	404	180	565	0	.	230	A	87735675	C	A	87735675	3	1	149	1	0	0	0	0	1	0	0	0	12782	711	25	3	7630	3	PTPN13	4	87735675	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	13453604	87735675	103418601	20	19093											
HSD17B13	345275	hgsc.bcm.edu;bcgsc.ca	37	4	88231395	88231395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSD17B13	NM_178135	exon6	c.A812G	p.K271R	ACTTACTTCTGTA	.	207	11	316	0	.	90	C	88231395	T	C	88231395	3	2	149	1	0	0	0	0	1	0	0	0	7382	1623	56	2	98	2	HSD17B13	4	88231395	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	495720	88231395	102922881	21	19094											
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	186598269	186598273	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TCCTG	TCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SORBS2	NM_001145673	exon5	c.370_374del	p.124_125del	TCAAGATCCTGTC	.	126	41	169	0	.	91	-	186598273	TCCTG	-	186598269	7	5	149	1	0	1	0	1	0	0	0	0	14928	1435	50	0	3877	0	SORBS2	4	186598269	Frame_Shift_Del	DEL	TCCTG	TCGA-G3-A3CJ-01A-11D-A20W-10	98366874	186598269	4556007	22	19095											
PCDHGA2	56113	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140720687	140720687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHGA2	NM_018915	exon1	c.C2149T	p.R717W	AGGCTGCGGCGCT	.	344	131	399	0	.	71	T	140720687	C	T	140720687	3	4	149	1	0	0	0	0	1	0	0	0	11554	759	27	1	2151	1	PCDHGA2	5	140720687	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		140720687	40194573	23	19096											
CAMK2A	815	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	149629865	149629865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMK2A	NM_171825	exon11	c.C824A	p.S275Y	ACGGTGGAGCGGT	.	80	26	106	0	.	333	T	149629865	G	T	149629865	3	4	149	1	0	0	0	0	1	0	0	0	2599	1174	41	3	681	3	CAMK2A	5	149629865	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	8909178	149629865	31285395	24	19097											
CYFIP2	26999	hgsc.bcm.edu;bcgsc.ca	37	5	156721861	156721861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.A277T	p.I93F	CGGGCCATTCCCA	.	237	24	327	0	.	22	T	156721861	A	T	156721861	3	4	149	1	0	0	0	0	1	0	0	0	4138	217	8	4	287	4	CYFIP2	5	156721861	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	7091996	156721861	24193399	25	19098											
GABRG2	2566	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	161569294	161569294	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GABRG2	NM_198903	exon8	c.G1014A	p.K338K	CAATAAGGATGCT	.	167	63	240	0	.	95	A	161569294	G	A	161569294	2	1	149	1	0	0	0	0	0	0	0	1	6172	991	35	3		3	GABRG2	5	161569294	Silent	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	4847433	161569294	19345966	26	19099											
HIST1H1C	3006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	26056377	26056377	+	Missense_Mutation	SNP	C	C	T	rs186228942	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H1C	NM_005319	exon1	c.G280A	p.V94M	TTTGCACCAGAGT	.	243	103	318	1	C|0.999;G|0.000	231	T	26056377	C	T	26056377	3	4	149	1	0	0	0	0	1	0	0	0	7124	507	18	3	365	3	HIST1H1C	6	26056377	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		26056377	145058690	27	19100											
HIST1H4G	8369	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	26246913	26246913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H4G	NM_003547	exon1	c.T293C	p.L98P	CCTTACAGGGTTC	.	117	39	138	0	.	68	G	26246913	A	G	26246913	3	3	149	1	0	0	0	0	1	0	0	0	7171	188	7	2	7	2	HIST1H4G	6	26246913	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	190536	26246913	144868154	28	19101											
DNAH8	1769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38690855	38690855	+	Silent	SNP	G	G	A	rs180723141	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH8	NM_001206927	exon2	c.G270A	p.P90P	TGCACCGCGACCG	.	118	44	168	0	G|0.997;C|0.003	615	A	38690855	G	A	38690855	2	1	149	1	0	0	0	0	0	0	0	1	4607	1102	38	1		1	DNAH8	6	38690855	Silent	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	12443942	38690855	132424212	29	19102											
KHDRBS2	202559	broad.mit.edu;bcgsc.ca	37	6	62604676	62604676	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KHDRBS2	NM_152688	exon6	c.674delG	p.G225fs	GTGCTTCCCCGAG	.	30	9	45	0	.	272	-	62604676	C	-	62604676	7	5	149	1	0	1	0	1	0	0	0	0	8147	855	30	0	391	0	KHDRBS2	6	62604676	Frame_Shift_Del	DEL	C	TCGA-G3-A3CJ-01A-11D-A20W-10	23913821	62604676	108510391	30	19103											
RIMS1	22999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73102485	73102485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIMS1	NM_014989	exon31	c.C4591T	p.R1531C	GTTGGCCGCCAAA	.	80	33	143	0	.	144	T	73102485	C	T	73102485	3	4	149	1	0	0	0	0	1	0	0	0	13367	652	23	1	4876	1	RIMS1	6	73102485	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	10497809	73102485	98012582	31	19104											
FBXL4	26235	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99328458	99328458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXL4	NM_012160	exon7	c.C1360A	p.Q454K	GGTGCTGAAGCTC	.	77	28	78	0	.	227	T	99328458	G	T	99328458	3	4	149	1	0	0	0	0	1	0	0	0	5721	1299	45	3	517	3	FBXL4	6	99328458	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	26225973	99328458	71786609	32	19105											
LAMA2	3908	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	129636958	129636958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA2	NM_000426	exon26	c.G3787T	p.E1263X	GCTCGGGAAGAAA	.	69	30	70	0	.	162	T	129636958	G	T	129636958	4	4	149	1	0	0	0	0	0	1	0	0	8606	1175	41	3	3889	3	LAMA2	6	129636958	Nonsense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	30308500	129636958	41478109	33	19106											
LMTK2	22853	hgsc.bcm.edu;ucsc.edu	37	7	97821054	97821054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMTK2	NM_014916	exon11	c.G1277A	p.W426X	AGCAGTGGAACGC	.	219	111	220	1	.	1381	A	97821054	G	A	97821054	4	1	149	1	0	0	0	0	0	1	0	0	8859	1357	47	3	1319	3	LMTK2	7	97821054	Nonsense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10		97821054	61317609	34	19107											
SSPO	23145	hgsc.bcm.edu;bcgsc.ca	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon63	c.9204+1T>C	.	AGCAGCTGCGCAG	.	412	33	539	0	.	.	C	149506213	T	C	149506213	5	2	149	1	0	0	0	0	0	0	1	0	15188	1580	55	2	9451	2	SSPO	7	149506213	Splice_Site	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	51685159	149506213	9632450	35	19108											
DLGAP2	9228	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1497492	1497492	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP2	NM_004745	exon2	c.C633T	p.P211P	CCGGCCCGGCATG	.	61	42	103	0	.	22	T	1497492	C	T	1497492	2	4	149	1	0	0	0	0	0	0	0	1	4560	639	23	1		1	DLGAP2	8	1497492	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		1497492	144866530	36	19109											
ERI1	90459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8865648	8865648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERI1	NM_153332	exon2	c.C277G	p.L93V	TTCAAGCTTGAAA	.	50	31	77	0	.	68	G	8865648	C	G	8865648	3	3	149	1	0	0	0	0	1	0	0	0	5227	797	28	4	283	4	ERI1	8	8865648	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	7368156	8865648	137498374	37	19110											
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	38148152	38148153	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.N987Y	GGATGTTCAGTGG	.	150	53	173	0	.	.	AG	38148153	TC	AG	38148152	3	1	149	1	0	0	0	0	1	0	0	0	17360	1783	62	4	1386	4	WHSC1L1	8	38148152	Missense_Mutation	DNP	TC	TCGA-G3-A3CJ-01A-11D-A20W-10	29282504	38148152	108215870	38	19111											
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95390864	95390864	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD54B	NM_001205263	exon12	c.1696-2A>G	.	ATTGCCTATAGAA	.	97	28	101	0	.	539	C	95390864	T	C	95390864	5	2	149	1	0	0	0	0	0	0	1	0	12992	1536	53	2	498	2	RAD54B	8	95390864	Splice_Site	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	57242712	95390864	50973158	39	19112											
TMEM2	23670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74347404	74347404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.A1426G	p.I476V	CGTCTATGATCTC	.	113	41	174	0	.	92	C	74347404	T	C	74347404	3	2	149	1	0	0	0	0	1	0	0	0	16118	1464	51	2	2797	2	TMEM2	9	74347404	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10		74347404	66866027	40	19113											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125772702	125772702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABGAP1	NM_012197	exon11	c.G1444C	p.E482Q	GAATCAGAAAGAG	.	75	30	84	0	.	500	C	125772702	G	C	125772702	3	2	149	1	0	0	0	0	1	0	0	0	12964	943	33	4	1482	4	RABGAP1	9	125772702	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	51425298	125772702	15440729	41	19114											
ECHDC3	79746	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	11805436	11805436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECHDC3	NM_024693	exon5	c.C805G	p.L269V	TACTACCTCACCT	.	14	8	19	0	.	90	G	11805436	C	G	11805436	3	3	149	1	0	0	0	0	1	0	0	0	4895	681	24	4	823	4	ECHDC3	10	11805436	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		11805436	123729311	42	19115											
CACNB2	783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18439889	18439889	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNB2	NM_201596	exon2	c.T198C	p.N66N	CTCAAATAGTTTT	.	127	48	169	0	.	154	C	18439889	T	C	18439889	2	2	149	1	0	0	0	0	0	0	0	1	2553	1403	49	2		2	CACNB2	10	18439889	Silent	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	6634453	18439889	117094858	43	19116											
ANKRD30A	91074	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	37508232	37508232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30A	NM_052997	exon34	c.C3424A	p.H1142N	GAATCACACCATC	.	164	51	244	0	.	161	A	37508232	C	A	37508232	3	1	149	1	0	0	0	0	1	0	0	0	658	478	17	3	3558	3	ANKRD30A	10	37508232	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	19068343	37508232	98026515	44	19117											
HERC4	26091	hgsc.bcm.edu;bcgsc.ca	37	10	69785411	69785411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G800T	p.G267V	CCAGCTCCAAAAG	.	107	43	133	0	.	659	A	69785411	C	A	69785411	3	1	149	1	0	0	0	0	1	0	0	0	7060	855	30	3	2449	3	HERC4	10	69785411	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	32277179	69785411	65749336	45	19118											
PPA1	5464	hgsc.bcm.edu;bcgsc.ca	37	10	71969338	71969338	+	Silent	SNP	C	C	A	rs79719906	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.G615T	p.A205A	ATTAAACGCAAAC	.	174	18	246	0	C|0.987;A|0.013	153	A	71969338	C	A	71969338	2	1	149	1	0	0	0	0	0	0	0	1	12286	523	19	1		1	PPA1	10	71969338	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	2183927	71969338	63565409	46	19119											
PKP3	11187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	397014	397014	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP3	NM_007183	exon3	c.G513A	p.G171G	GGTTGGGAGCCGG	.	40	17	37	0	.	91	A	397014	G	A	397014	2	1	149	1	0	0	0	0	0	0	0	1	11986	1161	41	3		3	PKP3	11	397014	Silent	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10		397014	134609502	47	19120											
TALDO1	6888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	759019	759019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TALDO1	NM_006755	exon3	c.G291T	p.K97N	ACTAAAGAAGATT	.	121	47	160	0	.	90	T	759019	G	T	759019	3	4	149	1	0	0	0	0	1	0	0	0	15540	933	33	3	301	3	TALDO1	11	759019	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	362005	759019	134247497	48	19121											
CCDC73	493860	broad.mit.edu;bcgsc.ca	37	11	32739625	32739625	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC73	NM_001008391	exon3	c.A204G	p.E68E	CACCTTTTGCCAT	.	45	5	63	0	.	91	C	32739625	T	C	32739625	2	2	149	1	0	0	0	0	0	0	0	1	2846	1838	64	2		2	CCDC73	11	32739625	Silent	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	31980606	32739625	102266891	49	19122											
PGM2L1	283209	ucsc.edu;bcgsc.ca	37	11	74056546	74056546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGM2L1	NM_173582	exon9	c.G1186T	p.A396S	CAATTGCCTTCAG	.	90	38	110	2	.	91	A	74056546	C	A	74056546	3	1	149	1	0	0	0	0	1	0	0	0	11799	739	26	3	706	3	PGM2L1	11	74056546	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	41316921	74056546	60949970	50	19123											
OR2AT4	341152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74799967	74799967	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2AT4	NM_001005285	exon1	c.C792T	p.Y264Y	GGCCACGTAGGCT	.	146	69	235	0	.	69	A	74799967	G	A	74799967	2	1	149	1	0	0	0	0	0	0	0	1	10987	1140	40	1		1	OR2AT4	11	74799967	Silent	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	743421	74799967	60206549	51	19124											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118526376	118526376	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLDB1	NM_001144758	exon21	c.C3936T	p.Y1312Y	GTACTACGACCAC	.	64	27	88	0	.	90	T	118526376	C	T	118526376	2	4	149	1	0	0	0	0	0	0	0	1	11851	547	19	1		1	PHLDB1	11	118526376	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	43726409	118526376	16480140	52	19125											
ARHGEF12	23365	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120310884	120310884	+	Missense_Mutation	SNP	A	A	G	rs187048571		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF12	NM_015313	exon13	c.A1046G	p.H349R	CACCTCATATTAT	.	149	56	253	0	A|0.999;G|0.001	661	G	120310884	A	G	120310884	3	3	149	1	0	0	0	0	1	0	0	0	897	217	8	2	1096	2	ARHGEF12	11	120310884	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	1784508	120310884	14695632	53	19126											
OR10G9	219870	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123894415	123894415	+	Silent	SNP	G	G	C	rs150463109	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10G9	NM_001001953	exon1	c.G696C	p.G232G	AGAGGGGAGGCAC	.	376	172	441	0	G|0.997;T|0.003	92	C	123894415	G	C	123894415	2	2	149	1	0	0	0	0	0	0	0	1	10904	1161	41	4		4	OR10G9	11	123894415	Silent	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	3583531	123894415	11112101	54	19127											
TEAD4	7004	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	3126664	3126664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TEAD4	NM_003213	exon6	c.G455A	p.R152Q	TCGCCCGGGGCCC	.	197	77	304	0	.	90	A	3126664	G	A	3126664	3	1	149	1	0	0	0	0	1	0	0	0	15738	1116	39	1	469	1	TEAD4	12	3126664	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10		3126664	130725231	55	19128											
PRICKLE1	144165	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	42858256	42858256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRICKLE1	NM_001144882	exon7	c.T1580C	p.L527P	GGTTTCAGGTCTG	.	266	96	328	0	.	518	G	42858256	A	G	42858256	3	3	149	1	0	0	0	0	1	0	0	0	12486	188	7	2	923	2	PRICKLE1	12	42858256	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	39731592	42858256	90993639	56	19129											
COL2A1	1280	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	48387630	48387630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL2A1	NM_001844	exon14	c.G886A	p.D296N	CACCGTCCAGGCC	.	170	70	253	0	.	92	T	48387630	C	T	48387630	3	4	149	1	0	0	0	0	1	0	0	0	3687	855	30	3	3741	3	COL2A1	12	48387630	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	5529374	48387630	85464265	57	19130											
KRT5	3852	ucsc.edu;bcgsc.ca	37	12	52913639	52913639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRT5	NM_000424	exon1	c.A442T	p.S148C	GGAGACTCTGGTT	.	361	138	518	2	.	90	A	52913639	T	A	52913639	3	1	149	1	0	0	0	0	1	0	0	0	8479	1551	54	4	1366	4	KRT5	12	52913639	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	4526009	52913639	80938256	58	19131											
MIP	4284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56848277	56848277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIP	NM_012064	exon1	c.G121T	p.V41F	GCAGAACATGCAG	.	334	127	439	0	.	91	A	56848277	C	A	56848277	3	1	149	1	0	0	0	0	1	0	0	0	9591	478	17	3	686	3	MIP	12	56848277	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	3934638	56848277	77003618	59	19132											
MAPKAPK5	8550	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112330837	112330837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKAPK5	NM_139078	exon14	c.A1394T	p.E465V	TAGAAGAGCAAAC	.	95	40	143	0	.	1215	T	112330837	A	T	112330837	3	4	149	1	0	0	0	0	1	0	0	0	9291	304	11	4	1448	4	MAPKAPK5	12	112330837	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	55482560	112330837	21521058	60	19133											
RFC5	5985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118464801	118464801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A771C	p.Q257H	GAATCAAGATTTC	.	72	30	123	0	.	227	C	118464801	A	C	118464801	3	2	149	1	0	0	0	0	1	0	0	0	13248	69	3	5	807	5	RFC5	12	118464801	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	6133964	118464801	15387094	61	19134			1	17		2	2	13	A		3.64373e-05
RFC5	5985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	118464813	118464813	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A783G	p.T261T	CACCACAGCCTAC	.	69	23	116	0	.	227	G	118464813	A	G	118464813	2	3	149	1	0	0	0	0	0	0	0	1	13248	175	7	2		2	RFC5	12	118464813	Silent	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	12	118464813	15387082	62	19135			1	17		2	2	13	A		3.64373e-05
GCN1L1	10985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120582745	120582745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon40	c.C5137A	p.R1713S	CTGAGCGATCCAC	.	87	34	129	0	.	94	T	120582745	G	T	120582745	3	4	149	1	0	0	0	0	1	0	0	0	6299	1058	37	1	2954	1	GCN1L1	12	120582745	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	2117932	120582745	13269150	63	19136											
SACS	26278	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23929049	23929049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SACS	NM_014363	exon8	c.G1702T	p.D568Y	CCCAGTCACAGCT	.	143	46	180	0	.	298	A	23929049	C	A	23929049	3	1	149	1	0	0	0	0	1	0	0	0	13804	826	29	3	12049	3	SACS	13	23929049	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		23929049	91240829	64	19137											
SHISA2	387914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	26620702	26620702	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHISA2	NM_001007538	exon2	c.837delC	p.P279fs	AGGGAAGGGGGAC	.	91	27	97	0	.	69	-	26620702	G	-	26620702	7	5	149	1	0	1	0	1	0	0	0	0	14280	987	35	0	54	0	SHISA2	13	26620702	Frame_Shift_Del	DEL	G	TCGA-G3-A3CJ-01A-11D-A20W-10	2691653	26620702	88549176	65	19138											
DLGAP5	9787	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55647496	55647496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP5	NM_014750	exon6	c.T581C	p.V194A	TGCACAACTGTGG	.	126	48	172	0	.	92	G	55647496	A	G	55647496	3	3	149	1	0	0	0	0	1	0	0	0	4563	57	2	2	2110	2	DLGAP5	14	55647496	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10		55647496	51702044	66	19139											
SYNE2	23224	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64465664	64465664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNE2	NM_182914	exon27	c.A3386G	p.H1129R	AACACCACCTGCA	.	153	56	202	2	.	164	G	64465664	A	G	64465664	3	3	149	1	0	0	0	0	1	0	0	0	15443	159	6	2	3488	2	SYNE2	14	64465664	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	8818168	64465664	42883876	67	19140											
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88693828	88693828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK10	NM_138318	exon4	c.572delT	p.L191fs	GCATATAAAATAC	.	97	40	80	0	.	95	-	88693828	A	-	88693828	7	5	149	1	0	1	0	1	0	0	0	0	8059	372	13	0	1075	0	KCNK10	14	88693828	Frame_Shift_Del	DEL	A	TCGA-G3-A3CJ-01A-11D-A20W-10	24228164	88693828	18655712	68	19141											
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26026311	26026311	+	Missense_Mutation	SNP	C	C	T	rs146522541	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP10A	NM_024490	exon2	c.G509A	p.R170H	CGAAGACGCACAA	.	146	60	216	0	C|1.000;T|0.000	139	T	26026311	C	T	26026311	3	4	149	1	0	0	0	0	1	0	0	0	1116	536	19	1	4070	1	ATP10A	15	26026311	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		26026311	76505081	69	19142											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42035016	42035016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon15	c.G4858A	p.D1620N	ATTTCTGACGTGG	.	48	19	70	0	.	522	A	42035016	G	A	42035016	3	1	149	1	0	0	0	0	1	0	0	0	9540	1290	45	3	4912	3	MGA	15	42035016	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	16008705	42035016	60496376	70	19143											
VPS35	55737	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	46696258	46696258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS35	NM_018206	exon15	c.T1964G	p.L655R	GCAGCAAGGGCAC	.	143	52	211	0	.	90	C	46696258	A	C	46696258	3	2	149	1	0	0	0	0	1	0	0	0	17200	72	3	5	438	5	VPS35	16	46696258	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10		46696258	43658495	71	19144											
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7578503	7578503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TP53,NS,carcinoma,+1	TP53	NM_000546	exon5	c.G427A	p.V143M	GCTGCACAGGGCA	.	125	51	167	0	.	70225	T	7578503	C	T	7578503	3	4	149	1	0	0	0	0	1	0	0	0	16378	478	17	3	871	3	TP53	17	7578503	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		7578503	73616707	72	19145											
CCDC144B	284047	ucsc.edu;bcgsc.ca	37	17	18498058	18498058	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC144B	.	.	.	.	AGTTGTTCATCAG	.	243	32	137	2	.	70	C	18498058	T	C	18498058	1	2	149	0	1	0	0	0	0	0	0	0	2778	1783	62	2		2	CCDC144B	17	18498058	RNA	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	10919555	18498058	62697152	73	19146											
MLLT6	4302	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	36861960	36861960	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLLT6	NM_005937	exon1	c.C75T	p.C25C	CTACTGCGATGGG	.	88	29	166	0	.	659	T	36861960	C	T	36861960	2	4	149	1	0	0	0	0	0	0	0	1	9630	776	27	1		1	MLLT6	17	36861960	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	18363902	36861960	44333250	74	19147											
WNK4	65266	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40932748	40932748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK4	NM_032387	exon1	c.T32C	p.V11A	CCACCGTCCTCAT	.	46	19	93	1	.	336	C	40932748	T	C	40932748	3	2	149	1	0	0	0	0	1	0	0	0	17377	1667	58	2	34	2	WNK4	17	40932748	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	4070788	40932748	40262462	75	19148											
ABCC3	8714	ucsc.edu;bcgsc.ca	37	17	48753410	48753410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCC3	NM_003786	exon22	c.C3026T	p.S1009F	ACACTTCCCTGAG	.	150	61	175	1	.	93	T	48753410	C	T	48753410	3	4	149	1	0	0	0	0	1	0	0	0	54	855	30	3	3196	3	ABCC3	17	48753410	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	7820662	48753410	32441800	76	19149											
PSMD12	5718	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65346351	65346351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSMD12	NM_002816	exon4	c.A399G	p.E133E	CTTGCCTTCGGTA	.	154	47	137	0	.	90	C	65346351	T	C	65346351	2	2	149	1	0	0	0	0	0	0	0	1	12695	1606	56	2		2	PSMD12	17	65346351	Silent	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	16592941	65346351	15848859	77	19150											
ARSG	22901	hgsc.bcm.edu;bcgsc.ca	37	17	66391287	66391287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARSG	NM_001267727	exon10	c.G1165T	p.V389L	GATGGTGTGGACG	.	282	19	289	0	.	91	T	66391287	G	T	66391287	3	4	149	1	0	0	0	0	1	0	0	0	992	1377	48	3	1199	3	ARSG	17	66391287	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	1044936	66391287	14803923	78	19151											
TRIM65	201292	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	73887372	73887372	+	Missense_Mutation	SNP	G	G	A	rs144407004		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM65	NM_173547	exon6	c.C1042T	p.R348C	CCTGGCGCGACAG	.	115	34	131	0	G|1.000;A|0.000	90	A	73887372	G	A	73887372	3	1	149	1	0	0	0	0	1	0	0	0	16536	1087	38	1	515	1	TRIM65	17	73887372	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	7496085	73887372	7307838	79	19152											
ANKRD12	23253	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	9257082	9257082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD12	NM_015208	exon9	c.A3817G	p.I1273V	GAGCGGATTAAAC	.	235	85	309	1	.	92	G	9257082	A	G	9257082	3	3	149	1	0	0	0	0	1	0	0	0	640	333	12	2	3847	2	ANKRD12	18	9257082	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10		9257082	68820166	80	19153											
TCEB3B	51224	hgsc.bcm.edu;ucsc.edu	37	18	44560926	44560926	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEB3B	NM_016427	exon1	c.T710A	p.L237X	GCACACAAGGGGC	.	225	100	255	1	.	156	T	44560926	A	T	44560926	4	4	149	1	0	0	0	0	0	1	0	0	15679	131	5	4	1555	4	TCEB3B	18	44560926	Nonsense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	35303844	44560926	33516322	81	19154											
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	21719985	21719985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF429	NM_001001415	exon4	c.C1130A	p.A377D	GCAAAGCTTTTAA	.	28	9	33	0	.	516	A	21719985	C	A	21719985	3	1	149	1	0	0	0	0	1	0	0	0	17899	797	28	3	1144	3	ZNF429	19	21719985	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10		21719985	37408998	82	19155											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22155940	22155940	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF208	NM_007153	exon4	c.T1896C	p.A632A	CTCTCCAGCATGA	.	83	28	69	0	.	7	G	22155940	A	G	22155940	2	3	149	1	0	0	0	0	0	0	0	1	17763	175	7	2		2	ZNF208	19	22155940	Silent	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10	435955	22155940	36973043	83	19156											
ZNF536	9745	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30935925	30935925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF536	NM_014717	exon2	c.C1456A	p.H486N	GACAAGCACTCCC	.	60	19	75	0	.	144	A	30935925	C	A	30935925	3	1	149	1	0	0	0	0	1	0	0	0	17971	710	25	3	1458	3	ZNF536	19	30935925	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	8779985	30935925	28193058	84	19157											
DMKN	93099	ucsc.edu;bcgsc.ca	37	19	36000834	36000834	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMKN	NM_001126058	exon7	c.G1017A	p.G339G	CCCGCTCCCGCGG	.	81	35	174	1	.	155	T	36000834	C	T	36000834	2	4	149	1	0	0	0	0	0	0	0	1	4582	842	30	3		3	DMKN	19	36000834	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	5064909	36000834	23128149	85	19158											
MLL4	8085	ucsc.edu;bcgsc.ca	37	19	36214634	36214634	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL4	NM_014727	exon8	c.C3060G	p.G1020G	CCGCAGCCGGACG	.	49	6	110	0	.	697	G	36214634	C	G	36214634	2	3	149	1	0	0	0	0	0	0	0	1	9623	753	26	4		4	MLL4	19	36214634	Silent	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	213800	36214634	22914349	86	19159											
GSK3A	2931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	42736820	42736820	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSK3A	NM_019884	exon9	c.A1113C	p.R371R	CGGCGTTCGAGAT	.	130	59	126	0	.	981	G	42736820	T	G	42736820	2	3	149	1	0	0	0	0	0	0	0	1	6823	1770	62	5		5	GSK3A	19	42736820	Silent	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	6522186	42736820	16392163	87	19160											
HIF3A	64344	ucsc.edu;bcgsc.ca	37	19	46832575	46832575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIF3A	NM_152795	exon12	c.G1552A	p.A518T	CTGGGGGCTGTCC	.	159	54	198	1	.	228	A	46832575	G	A	46832575	3	1	149	1	0	0	0	0	1	0	0	0	7105	1203	42	3	1622	3	HIF3A	19	46832575	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	4095755	46832575	12296408	88	19161											
DHX34	9704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47880440	47880440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX34	NM_014681	exon13	c.T2683A	p.C895S	GTGAACTGCGTCC	.	76	30	134	0	.	231	A	47880440	T	A	47880440	3	1	149	1	0	0	0	0	1	0	0	0	4507	1580	55	4	2729	4	DHX34	19	47880440	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	1047865	47880440	11248543	89	19162											
PFKL	5211	broad.mit.edu;bcgsc.ca	37	21	45744776	45744776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFKL	NM_002626	exon18	c.A1853G	p.D618G	AGACAGACATTCA	.	190	8	261	1	.	251	G	45744776	A	G	45744776	3	3	149	1	0	0	0	0	1	0	0	0	11764	275	10	2	1923	2	PFKL	21	45744776	Missense_Mutation	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10		45744776	2385119	90	19163											
TNRC6B	23112	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40657900	40657900	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6B	NM_001024843	exon7	c.A288G	p.P96P	CTCTCCATCGCCA	.	181	69	248	0	.	22	G	40657900	A	G	40657900	2	3	149	1	0	0	0	0	0	0	0	1	16338	204	8	2		2	TNRC6B	22	40657900	Silent	SNP	A	TCGA-G3-A3CJ-01A-11D-A20W-10		40657900	10646666	91	19164											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	51637805	51637806	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAGED1	NM_001005333	exon3	c.128_129del	p.43_43del	CCACTCTGTGCGA	.	131	85	224	0	.	133	-	51637806	TG	-	51637805	7	5	149	1	0	1	0	1	0	0	0	0	9183	1580	55	0	134	0	MAGED1	23	51637805	Frame_Shift_Del	DEL	TG	TCGA-G3-A3CJ-01A-11D-A20W-10		51637805	103632755	92	19165											
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu	37	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	CCGTTGTCCCCTT	.	170	12	108	0	.	91	C	101395774	T	C	101395774	3	2	149	1	0	0	0	0	1	0	0	0	15672	1667	58	2	25	2	TCEAL6	23	101395774	Missense_Mutation	SNP	T	TCGA-G3-A3CJ-01A-11D-A20W-10	49757969	101395774	53874786	93	19166	107	2									
TCEAL6	158931	hgsc.bcm.edu;bcgsc.ca	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	164	23	108	0	.	91	T	101395778	C	T	101395778	3	4	149	1	0	0	0	0	1	0	0	0	15672	681	24	3	29	3	TCEAL6	23	101395778	Missense_Mutation	SNP	C	TCGA-G3-A3CJ-01A-11D-A20W-10	4	101395778	53874782	94	19167	107	2									
GPRASP2	114928	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101971961	101971961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRASP2	NM_138437	exon4	c.G2164A	p.G722R	ATGTCCGGGTTTC	.	167	138	215	0	.	131	A	101971961	G	A	101971961	3	1	149	1	0	0	0	0	1	0	0	0	6723	1116	39	1	2166	1	GPRASP2	23	101971961	Missense_Mutation	SNP	G	TCGA-G3-A3CJ-01A-11D-A20W-10	576183	101971961	53298599	95	19168											
PRKCZ	5590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2103755	2103755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKCZ	NM_002744	exon13	c.G1213T	p.G405C	GGCCCTGGTGACA	.	104	25	124	0	.	1465	T	2103755	G	T	2103755	3	4	150	1	0	0	0	0	1	0	0	0	12517	1348	47	3	1263	3	PRKCZ	1	2103755	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10		2103755	247146866	1	19169											
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11896203	11896203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CLCN6	NM_001286	exon18	c.A1973T	p.K658M	ACATCAAGTTCAA	.	138	50	149	0	.	90	T	11896203	A	T	11896203	3	4	150	1	0	0	0	0	1	0	0	0	3467	72	3	4	2053	4	CLCN6	1	11896203	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	9792448	11896203	237354418	2	19170											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19482082	19482082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UBR4	NM_020765	exon43	c.C6153A	p.F2051L	GAAAAGGAAGGTA	.	244	68	223	0	.	612	T	19482082	G	T	19482082	3	4	150	1	0	0	0	0	1	0	0	0	16901	1165	41	3	9654	3	UBR4	1	19482082	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	7585879	19482082	229768539	3	19171											
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27124244	27124259	+	Frame_Shift_Del	DEL	GTTCTCCAGTCACACG	GTTCTCCAGTCACACG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GTTCTCCAGTCACACG	GTTCTCCAGTCACACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PIGV	NM_001202554	exon4	c.1391_1406del	p.464_469del	AAACCTGTTCTCC	.	117	23	150	0	.	91	-	27124259	GTTCTCCAGTCACACG	-	27124244	7	5	150	1	0	1	0	1	0	0	0	0	11901	1377	48	0	1401	0	PIGV	1	27124244	Frame_Shift_Del	DEL	GTTCTCCAGTCACACG	TCGA-G3-A3CK-01A-11D-A20W-10	7642162	27124244	222126377	4	19172											
RCC1	1104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28861881	28861881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RCC1	NM_001048194	exon7	c.G743C	p.R248P	GTGGCCGGCAAGG	.	123	43	105	1	.	228	C	28861881	G	C	28861881	3	2	150	1	0	0	0	0	1	0	0	0	13173	1116	39	4	765	4	RCC1	1	28861881	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1737637	28861881	220388740	5	19173											
GJB5	2709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35223387	35223387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GJB5	NM_005268	exon2	c.C456A	p.F152L	CTCATTCTACCCC	.	95	29	103	0	.	91	A	35223387	C	A	35223387	3	1	150	1	0	0	0	0	1	0	0	0	6411	912	32	3	458	3	GJB5	1	35223387	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	6361506	35223387	214027234	6	19174											
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43638463	43638463	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WDR65	NM_001195831	exon2	c.T39C	p.G13G	TTTTGGTCTTCGA	.	170	27	158	0	.	91	C	43638463	T	C	43638463	2	2	150	1	0	0	0	0	0	0	0	1	17313	1654	58	2		2	WDR65	1	43638463	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8415076	43638463	205612158	7	19175											
DMBX1	127343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46972704	46972704	+	Missense_Mutation	SNP	G	G	A	rs150745846		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DMBX1	NM_147192	exon1	c.G22A	p.G8S	GTGAACGGCTACT	.	408	142	391	0	G|1.000;A|0.000	227	A	46972704	G	A	46972704	3	1	150	1	0	0	0	0	1	0	0	0	4578	1116	39	1	24	1	DMBX1	1	46972704	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	3334241	46972704	202277917	8	19176											
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52289359	52289359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NRD1	NM_002525	exon9	c.T1340C	p.M447T	AAAGTCATGTAAT	.	185	72	202	0	.	90	G	52289359	A	G	52289359	3	3	150	1	0	0	0	0	1	0	0	0	10645	217	8	2	2419	2	NRD1	1	52289359	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	5316655	52289359	196961262	9	19177											
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62676374	62676374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	L1TD1	NM_001164835	exon5	c.T1928C	p.L643S	GTGTCTTGGAAAT	.	155	48	161	0	.	92	C	62676374	T	C	62676374	3	2	150	1	0	0	0	0	1	0	0	0	8589	1821	63	2	1934	2	L1TD1	1	62676374	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	10387015	62676374	186574247	10	19178											
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63070352	63070352	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ANGPTL3	NM_014495	exon7	c.C1247C	p.A416A	ATGGTAAATATAA	.	269	81	259	0	.	130	C	63070352	A	C	63070352	2	2	150	1	0	0	0	0	0	0	0	1	615	14	1	5		5	ANGPTL3	1	63070352	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	393978	63070352	186180269	11	19179											
GBP3	2635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89480301	89480301	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GBP3	NM_018284	exon4	c.C357A	p.A119A	GAGGACGGCCAGG	.	297	138	229	0	.	92	T	89480301	G	T	89480301	2	4	150	1	0	0	0	0	0	0	0	1	6275	1103	39	1		1	GBP3	1	89480301	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	26409949	89480301	159770320	12	19180											
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108322079	108322079	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VAV3	NM_006113	exon3	c.T357A	p.P119P	TGCTATAGGTGTT	.	112	39	83	0	.	1339	T	108322079	A	T	108322079	2	4	150	1	0	0	0	0	0	0	0	1	17130	407	15	4		4	VAV3	1	108322079	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	18841778	108322079	140928542	13	19181											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109795272	109795272	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CELSR2	NM_001408	exon1	c.C2571T	p.G857G	AGGAGGCGACGAT	.	226	100	158	0	.	526	T	109795272	C	T	109795272	2	4	150	1	0	0	0	0	0	0	0	1	3222	755	27	1		1	CELSR2	1	109795272	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	1473193	109795272	139455349	14	19182											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144921895	144921895	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4DIP	NM_001002811	exon5	c.T1623C	p.F541F	CTCTACAAATTGC	.	418	55	358	0	.	663	G	144921895	A	G	144921895	2	3	150	1	0	0	0	0	0	0	0	1	11643	127	5	2		2	PDE4DIP	1	144921895	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	35126623	144921895	104328726	15	19183											
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150437008	150437008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPRD2	NM_015203	exon10	c.A1417G	p.S473G	GGGGTCAGTCCTG	.	57	21	34	0	.	23	G	150437008	A	G	150437008	3	3	150	1	0	0	0	0	1	0	0	0	13617	188	7	2	1455	2	RPRD2	1	150437008	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	5515113	150437008	98813613	16	19184											
PI4KB	5298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	151280253	151280253	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PI4KB	NM_002651	exon5	c.G1015T	p.E339X	TGAATTCTCTCTC	.	226	105	219	0	.	268	A	151280253	C	A	151280253	4	1	150	1	0	0	0	0	0	1	0	0	11874	922	32	3	1507	3	PI4KB	1	151280253	Nonsense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	843245	151280253	97970368	17	19185											
B4GALT3	8703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161141842	161141842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	B4GALT3	NM_003779	exon8	c.C946A	p.Q316K	CATCTTGCGTCCA	.	143	40	114	0	.	90	T	161141842	G	T	161141842	3	4	150	1	0	0	0	0	1	0	0	0	1272	1328	46	3	239	3	B4GALT3	1	161141842	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	9861589	161141842	88108779	18	19186											
SCYL3	57147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169847817	169847817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCYL3	NM_020423	exon3	c.G309T	p.G103G	ATAGATCCCAGCA	.	391	208	260	0	.	361	A	169847817	C	A	169847817	2	1	150	1	0	0	0	0	0	0	0	1	13949	842	30	3		3	SCYL3	1	169847817	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	8705975	169847817	79402804	19	19187											
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178269226	178269226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RASAL2	NM_170692	exon3	c.T430C	p.Y144H	CCCGAGTACCCAC	.	86	44	74	0	.	155	C	178269226	T	C	178269226	3	2	150	1	0	0	0	0	1	0	0	0	13064	1638	57	2	440	2	RASAL2	1	178269226	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8421409	178269226	70981395	20	19188											
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186295352	186295352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TPR	NM_003292	exon41	c.G5905A	p.E1969K	CTTCCTCATCCTC	.	140	73	135	0	.	228	T	186295352	C	T	186295352	3	4	150	1	0	0	0	0	1	0	0	0	16413	835	29	3	1230	3	TPR	1	186295352	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	8026126	186295352	62955269	21	19189											
GPR25	2848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	200843249	200843249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR25	NM_005298	exon1	c.T1084G	p.X362E	TCCTGGTAGCTGC	.	42	19	37	0	.	91	G	200843249	T	G	200843249	3	3	150	1	0	0	0	0	1	0	0	0	6683	1651	57	5	1086	5	GPR25	1	200843249	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	14547897	200843249	48407372	22	19190											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205038645	205038645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNTN2	NM_005076	exon17	c.A2152G	p.S718G	GGACTCAGCGGAG	.	156	36	124	0	.	91	G	205038645	A	G	205038645	3	3	150	1	0	0	0	0	1	0	0	0	3641	188	7	2	2214	2	CNTN2	1	205038645	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	4195396	205038645	44211976	23	19191											
EPRS	2058	hgsc.bcm.edu;bcgsc.ca	37	1	220146578	220146578	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPRS	NM_004446	exon30	c.4244+2T>C	.	GAAACTACCTTGT	.	135	21	150	0	.	92	G	220146578	A	G	220146578	5	3	150	1	0	0	0	0	0	0	1	0	5191	405	14	2	308	2	EPRS	1	220146578	Splice_Site	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	15107933	220146578	29104043	24	19192											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225611703	225611703	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LBR	NM_194442	exon2	c.A75G	p.V25V	AATTTCTACTTCA	.	192	46	165	0	.	228	C	225611703	T	C	225611703	2	2	150	1	0	0	0	0	0	0	0	1	8652	1509	53	2		2	LBR	1	225611703	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	5465125	225611703	23638918	25	19193											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228469861	228469861	+	Missense_Mutation	SNP	T	T	C	rs189169421	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	OBSCN_ENST00000359599,NS,carcinoma,0	OBSCN	NM_001271223	exon36	c.T9712C	p.F3238L	GTGGTCTTCTCTG	.	303	172	254	0	T|0.999;G|0.001	403	C	228469861	T	C	228469861	3	2	150	1	0	0	0	0	1	0	0	0	10812	1609	56	2	8543	2	OBSCN	1	228469861	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2858158	228469861	20780760	26	19194											
RAB4A	5867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229431599	229431599	+	Missense_Mutation	SNP	G	G	T	rs141754859	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAB4A	NM_004578	exon4	c.G232T	p.V78L	AGGTCCGTGACGA	.	125	32	110	0	G|1.000;A|0.000	182	T	229431599	G	T	229431599	3	4	150	1	0	0	0	0	1	0	0	0	12946	1145	40	1	246	1	RAB4A	1	229431599	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	961738	229431599	19819022	27	19195											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229779359	229779359	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	URB2	NM_014777	exon5	c.G3714A	p.G1238G	GGTTGGGACGACA	.	253	127	208	0	.	174	A	229779359	G	A	229779359	2	1	150	1	0	0	0	0	0	0	0	1	17022	1161	41	3		3	URB2	1	229779359	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	347760	229779359	19471262	28	19196											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32654298	32654298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BIRC6	NM_016252	exon11	c.A2957C	p.K986T	TTTCTAAAGGAAT	.	37	17	37	0	.	233	C	32654298	A	C	32654298	3	2	150	1	0	0	0	0	1	0	0	0	1438	14	1	5	2999	5	BIRC6	2	32654298	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10		32654298	210545075	29	19197											
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45812829	45812829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SRBD1	NM_018079	exon5	c.A733C	p.I245L	GTATAATGAAGGG	.	104	25	134	0	.	90	G	45812829	T	G	45812829	3	3	150	1	0	0	0	0	1	0	0	0	15132	1464	51	5	2322	5	SRBD1	2	45812829	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	13158531	45812829	197386544	30	19198											
STON1	11037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48818835	48818835	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.1974delA	p.G658fs	GCTTGGATCAGAC	.	217	36	256	0	.	91	-	48818835	A	-	48818835	7	5	150	1	0	1	0	1	0	0	0	0	15315	320	12	0	1980	0	STON1	2	48818835	Frame_Shift_Del	DEL	A	TCGA-G3-A3CK-01A-11D-A20W-10	3006006	48818835	194380538	31	19199	108	3									
STON1	11037	hgsc.bcm.edu;bcgsc.ca	37	2	48818838	48818838	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.A1977T	p.S659S	TGGATCAGACCAA	.	216	36	258	0	.	91	T	48818838	A	T	48818838	2	4	150	1	0	0	0	0	0	0	0	1	15315	175	7	4		4	STON1	2	48818838	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	3	48818838	194380535	32	19200	108	3									
STON1	11037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48818840	48818841	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.1979_1980del	p.660_660del	GATCAGACCAAGA	.	216	35	255	0	.	91	-	48818841	AC	-	48818840	7	5	150	1	0	1	0	1	0	0	0	0	15315	275	10	0	1985	0	STON1	2	48818840	Frame_Shift_Del	DEL	AC	TCGA-G3-A3CK-01A-11D-A20W-10	2	48818840	194380533	33	19201	108	3									
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71577282	71577282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF638	NM_014497	exon2	c.G1198A	p.D400N	CATGCTGATGCCC	.	82	6	58	0	.	94	A	71577282	G	A	71577282	3	1	150	1	0	0	0	0	1	0	0	0	18052	1290	45	3	1200	3	ZNF638	2	71577282	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	22758442	71577282	171622091	34	19202											
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100210640	100210640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AFF3	NM_001025108	exon14	c.C1558A	p.Q520K	AGTACTGATTGCT	.	244	72	279	0	.	230	T	100210640	G	T	100210640	3	4	150	1	0	0	0	0	1	0	0	0	358	1299	45	3	2241	3	AFF3	2	100210640	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	28633358	100210640	142988733	35	19203											
ZC3H8	84524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112989510	112989510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZC3H8	NM_032494	exon7	c.A748C	p.K250Q	AAAACTTACAAGG	.	74	24	63	0	.	226	G	112989510	T	G	112989510	3	3	150	1	0	0	0	0	1	0	0	0	17571	1763	61	5	135	5	ZC3H8	2	112989510	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	12778870	112989510	130209863	36	19204											
PTPN18	26469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131117002	131117002	+	Silent	SNP	G	G	T	rs138461234	byfrequency;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PTPN18	NM_014369	exon4	c.G312T	p.T104T	TGCCACGCAAGGA	.	98	30	119	0	G|0.996;C|0.004	229	T	131117002	G	T	131117002	2	4	150	1	0	0	0	0	0	0	0	1	12784	1074	38	1		1	PTPN18	2	131117002	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	18127492	131117002	112082371	37	19205											
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165542496	165542496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	COBLL1	NM_014900	exon14	c.T3461G	p.L1154R	TGGCTGAGTCTTG	.	93	34	96	0	.	93	C	165542496	A	C	165542496	3	2	150	1	0	0	0	0	1	0	0	0	3654	304	11	5	43	5	COBLL1	2	165542496	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	34425494	165542496	77656877	38	19206											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170033099	170033110	+	Splice_Site	DEL	CTAGTGGAAAAG	CTAGTGGAAAAG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CTAGTGGAAAAG	CTAGTGGAAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRP2	.	.	.	.	TGCTCACTAGTGG	.	66	10	95	0	.	175	-	170033110	CTAGTGGAAAAG	-	170033099	8	5	150	1	0	1	0	1	0	0	1	0	8956	579	20	0	3678	0	LRP2	2	170033099	Splice_Site	DEL	CTAGTGGAAAAG	TCGA-G3-A3CK-01A-11D-A20W-10	4490603	170033099	73166274	39	19207											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171713607	171713607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GAD1	NM_000817	exon15	c.A1493G	p.E498G	ACAGAGAAGAATT	.	87	25	67	0	.	91	G	171713607	A	G	171713607	3	3	150	1	0	0	0	0	1	0	0	0	6179	246	9	2	1588	2	GAD1	2	171713607	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	1680508	171713607	71485766	40	19208											
SP3	6670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174820648	174820648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SP3	NM_003111	exon4	c.A592C	p.N198H	CTTGATTTATACC	.	193	63	208	0	.	227	G	174820648	T	G	174820648	3	3	150	1	0	0	0	0	1	0	0	0	14965	1841	64	5	1769	5	SP3	2	174820648	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	3107041	174820648	68378725	41	19209											
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197643775	197643775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GTF3C3	NM_012086	exon10	c.T1235C	p.L412P	TCTACTAGTGTTG	.	149	47	175	0	.	97	G	197643775	A	G	197643775	3	3	150	1	0	0	0	0	1	0	0	0	6874	420	15	2	1461	2	GTF3C3	2	197643775	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	22823127	197643775	45555598	42	19210											
MPP4	58538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202549803	202549803	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MPP4	NM_033066	exon7	c.G558A	p.G186G	CGCCAGCCCACCG	.	121	35	95	0	.	22	T	202549803	C	T	202549803	2	4	150	1	0	0	0	0	0	0	0	1	9736	726	26	3		3	MPP4	2	202549803	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	4906028	202549803	40649570	43	19211											
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216923626	216923626	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PECR	NM_018441	exon4	c.A498T	p.P166P	AGCTAATGGAAAT	.	192	66	202	0	.	90	A	216923626	T	A	216923626	2	1	150	1	0	0	0	0	0	0	0	1	11717	1451	51	4		4	PECR	2	216923626	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	14373823	216923626	26275747	44	19212											
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220406586	220406586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CHPF	NM_024536	exon2	c.G640A	p.G214S	GGTGGCCAGTTAG	.	125	39	68	0	.	90	T	220406586	C	T	220406586	3	4	150	1	0	0	0	0	1	0	0	0	3368	594	21	3	1699	3	CHPF	2	220406586	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	3482960	220406586	22792787	45	19213											
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234581246	234581246	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UGT1A9	NM_021027	exon1	c.T666A	p.R222R	CCACCGTTTTTTC	.	341	117	414	0	.	91	A	234581246	T	A	234581246	2	1	150	1	0	0	0	0	0	0	0	1	16949	1712	60	4		4	UGT1A9	2	234581246	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	14174660	234581246	8618127	46	19214	109	2									
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234581248	234581248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UGT1A9	NM_021027	exon1	c.T668A	p.F223Y	ACCGTTTTTTCAA	.	336	113	411	0	.	91	A	234581248	T	A	234581248	3	1	150	1	0	0	0	0	1	0	0	0	16949	1841	64	4	670	4	UGT1A9	2	234581248	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2	234581248	8618125	47	19215	109	2									
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4776907	4776907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITPR1	NM_001168272	exon43	c.T5368C	p.C1790R	GTTCAGTGTCACC	.	101	39	135	0	.	710	C	4776907	T	C	4776907	3	2	150	1	0	0	0	0	1	0	0	0	7920	1696	59	2	5579	2	ITPR1	3	4776907	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10		4776907	193245523	48	19216											
CMTM8	152189	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	32280486	32280486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CMTM8	NM_178868	exon1	c.C22T	p.R8C	CGCGCCCGCTCGC	.	225	92	210	1	.	90	T	32280486	C	T	32280486	3	4	150	1	0	0	0	0	1	0	0	0	3589	652	23	1	24	1	CMTM8	3	32280486	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	27503579	32280486	165741944	49	19217											
TRIM71	131405	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32932714	32932714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TRIM71	NM_001039111	exon4	c.A2018G	p.D673G	ACAAGGACAATCA	.	81	31	74	2	.	92	G	32932714	A	G	32932714	3	3	150	1	0	0	0	0	1	0	0	0	16541	275	10	2	2032	2	TRIM71	3	32932714	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	652228	32932714	165089716	50	19218											
ARPP21	10777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	35763321	35763321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARPP21	NM_016300	exon14	c.A1220C	p.K407T	TGTCCAAAGCAGG	.	206	47	255	0	.	93	C	35763321	A	C	35763321	3	2	150	1	0	0	0	0	1	0	0	0	978	14	1	5	1279	5	ARPP21	3	35763321	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	2830607	35763321	162259109	51	19219											
PLCD1	5333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38061825	38061825	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLCD1	NM_001130964	exon2	c.A116T	p.D39V	TGTAGATCCTCAT	.	100	30	124	0	.	226	A	38061825	T	A	38061825	3	1	150	1	0	0	0	0	1	0	0	0	12031	1435	50	4	2273	4	PLCD1	3	38061825	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2298504	38061825	159960605	52	19220											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	329	98	398	0	.	24361	C	41266100	T	C	41266100	3	2	150	1	0	0	0	0	1	0	0	0	4016	1551	54	2	103	2	CTNNB1	3	41266100	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	3204275	41266100	156756330	53	19221	110	2									
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	330	96	382	0	.	24361	C	41266110	A	C	41266110	3	2	150	1	0	0	0	0	1	0	0	0	4016	217	8	5	113	5	CTNNB1	3	41266110	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	10	41266110	156756320	54	19222	110	2									
MANF	7873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51426503	51426503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_006010	exon4	c.G532A	p.A178T	GCCAGTGCACGGA	.	100	41	94	0	.	.	A	51426503	G	A	51426503	3	1	150	1	0	0	0	0	1	0	0	0	9223	1319	46	3	555	3	MANF	3	51426503	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	10160393	51426503	146595927	55	19223											
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52823733	52823733	+	Silent	SNP	G	G	C	rs145442481	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITIH1	NM_002215	exon19	c.G2184C	p.T728T	CGGCACGTACTTC	.	110	40	112	0	G|1.000;A|0.000	93	C	52823733	G	C	52823733	2	2	150	1	0	0	0	0	0	0	0	1	7903	1132	40	4		4	ITIH1	3	52823733	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1397230	52823733	145198697	56	19224											
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	58141694	58141694	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FLNB	NM_001164317	exon42	c.C6873G	p.Y2291X	TAACTACGAGGTG	.	69	20	75	0	.	593	G	58141694	C	G	58141694	4	3	150	1	0	0	0	0	0	1	0	0	5934	547	19	4	7039	4	FLNB	3	58141694	Nonsense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	5317961	58141694	139880736	57	19225											
PHLDB2	90102	hgsc.bcm.edu;bcgsc.ca	37	3	111632427	111632427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PHLDB2	NM_001134437	exon4	c.1678delT	p.F560fs	AGCTTCTTTACCC	.	150	51	115	0	.	96	-	111632427	T	-	111632427	7	5	150	1	0	1	0	1	0	0	0	0	11852	1609	56	0	1688	0	PHLDB2	3	111632427	Frame_Shift_Del	DEL	T	TCGA-G3-A3CK-01A-11D-A20W-10	53490733	111632427	86390003	58	19226											
KPNA1	3836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	122146558	122146558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KPNA1	NM_002264	exon13	c.T1256C	p.L419P	TCTACTAGGTACC	.	55	24	54	0	.	226	G	122146558	A	G	122146558	3	3	150	1	0	0	0	0	1	0	0	0	8429	420	15	2	368	2	KPNA1	3	122146558	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	10514131	122146558	75875872	59	19227											
KPNA1	3836	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122186176	122186176	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KPNA1	NM_002264	exon3	c.T230A	p.M77K	GGTGCCATCTCCA	.	212	43	203	1	.	226	T	122186176	A	T	122186176	3	4	150	1	0	0	0	0	1	0	0	0	8429	217	8	4	1434	4	KPNA1	3	122186176	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	39618	122186176	75836254	60	19228											
C3orf79	152118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	153202472	153202472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001101337	exon1	c.T127C	p.Y43H	TTGCTTTACAAGG	.	138	45	152	0	.	.	C	153202472	T	C	153202472	3	2	150	1	0	0	0	0	1	0	0	0	2246	1754	61	2	129	2	C3orf79	3	153202472	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	31016296	153202472	44819958	61	19229											
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170723139	170723139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC2A2	NM_000340	exon7	c.T898C	p.Y300H	GTCGGTAGCTGGA	.	198	65	215	0	.	515	G	170723139	A	G	170723139	3	3	150	1	0	0	0	0	1	0	0	0	14544	420	15	2	696	2	SLC2A2	3	170723139	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	17520667	170723139	27299291	62	19230											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184040633	184040633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EIF4G1	NM_001194946	exon14	c.A1841G	p.E614G	ACCTAGAGGAGAA	.	119	33	95	0	.	344	G	184040633	A	G	184040633	3	3	150	1	0	0	0	0	1	0	0	0	5036	304	11	2	1862	2	EIF4G1	3	184040633	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	13317494	184040633	13981797	63	19231											
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187449531	187449531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BCL6	NM_001134738	exon3	c.G349T	p.V117F	CCACAACATGCTC	.	179	65	155	0	.	848	A	187449531	C	A	187449531	3	1	150	1	0	0	0	0	1	0	0	0	1376	478	17	3	1799	3	BCL6	3	187449531	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	3408898	187449531	10572899	64	19232											
DHX15	1665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24529578	24529578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DHX15	NM_001358	exon14	c.A2357C	p.K786T	TGAAGTTTGGCAA	.	173	65	141	0	.	91	G	24529578	T	G	24529578	3	3	150	1	0	0	0	0	1	0	0	0	4501	1841	64	5	34	5	DHX15	4	24529578	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10		24529578	166624698	65	19233											
KLB	152831	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39409343	39409343	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KLB	NM_175737	exon1	c.A774T	p.G258G	CCCTGGAGAGAAG	.	196	65	207	1	.	69	T	39409343	A	T	39409343	2	4	150	1	0	0	0	0	0	0	0	1	8332	291	11	4		4	KLB	4	39409343	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	14879765	39409343	151744933	66	19234											
LIAS	11019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39460742	39460742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LIAS	NM_194451	exon1	c.C5A	p.S2Y	AAATGTCTCTACG	.	59	11	52	0	.	90	A	39460742	C	A	39460742	3	1	150	1	0	0	0	0	1	0	0	0	8778	913	32	3	7	3	LIAS	4	39460742	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	51399	39460742	151693534	67	19235											
TMEM33	55161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	41941283	41941289	+	Frame_Shift_Del	DEL	CATCAAA	CATCAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CATCAAA	CATCAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.211_217del	p.71_73del	AGGCTGCATCAAA	.	234	17	274	0	.	91	-	41941289	CATCAAA	-	41941283	7	5	150	1	0	1	0	1	0	0	0	0	16153	710	25	0	221	0	TMEM33	4	41941283	Frame_Shift_Del	DEL	CATCAAA	TCGA-G3-A3CK-01A-11D-A20W-10	2480541	41941283	149212993	68	19236	111	2									
TMEM33	55161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	41941291	41941298	+	Frame_Shift_Del	DEL	ATTACCAC	ATTACCAC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	ATTACCAC	ATTACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.219_226del	p.73_76del	TCAAAGATTACCA	.	221	17	276	0	.	91	-	41941298	ATTACCAC	-	41941291	7	5	150	1	0	1	0	1	0	0	0	0	16153	330	12	0	229	0	TMEM33	4	41941291	Frame_Shift_Del	DEL	ATTACCAC	TCGA-G3-A3CK-01A-11D-A20W-10	8	41941291	149212985	69	19237	111	2									
KDR	3791	broad.mit.edu;bcgsc.ca	37	4	55948168	55948168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KDR	NM_002253	exon29	c.A3803G	p.E1268G	TTCAGCTCTTCTG	.	135	6	170	1	.	2298	C	55948168	T	C	55948168	3	2	150	1	0	0	0	0	1	0	0	0	8139	1551	54	2	275	2	KDR	4	55948168	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	14006877	55948168	135206108	70	19238											
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109000723	109000723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LEF1	NM_016269	exon7	c.G770A	p.G257D	GGGATGCCAGTTG	.	141	58	174	0	.	721	T	109000723	C	T	109000723	3	4	150	1	0	0	0	0	1	0	0	0	8714	739	26	3	533	3	LEF1	4	109000723	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	53052555	109000723	82153553	71	19239											
CCNA2	890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122740571	122740571	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCNA2	NM_001237	exon5	c.C958T	p.L320L	GATGCAGAAAGTA	.	162	63	144	1	.	848	A	122740571	G	A	122740571	2	1	150	1	0	0	0	0	0	0	0	1	2910	933	33	3		3	CCNA2	4	122740571	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	13739848	122740571	68413705	72	19240											
VEGFC	7424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177608449	177608449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	VEGFC,NS,carcinoma,-1	VEGFC	NM_005429	exon6	c.C1037G	p.T346S	GGGCAGGTTCTTT	.	230	89	257	0	.	710	C	177608449	G	C	177608449	3	2	150	1	0	0	0	0	1	0	0	0	17149	1261	44	4	233	4	VEGFC	4	177608449	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	54867878	177608449	13545827	73	19241											
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5454677	5454677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0947	NM_015325	exon11	c.T617C	p.L206P	TGAAACTGCTTCT	.	110	39	87	0	.	48	C	5454677	T	C	5454677	3	2	150	1	0	0	0	0	1	0	0	0	8202	1580	55	2	659	2	KIAA0947	5	5454677	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10		5454677	175460583	74	19242											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7773106	7773106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADCY2	NM_020546	exon18	c.A2276G	p.Y759C	TAAACTATGAGCT	.	358	128	344	0	.	97	G	7773106	A	G	7773106	3	3	150	1	0	0	0	0	1	0	0	0	294	449	16	2	2346	2	ADCY2	5	7773106	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	2318429	7773106	173142154	75	19243											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26881298	26881298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDH9	NM_016279	exon12	c.C2317A	p.R773S	TGAAACGAGGCCC	.	139	44	128	0	.	99	T	26881298	G	T	26881298	3	4	150	1	0	0	0	0	1	0	0	0	3117	1058	37	1	56	1	CDH9	5	26881298	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	19108192	26881298	154033962	76	19244											
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52347345	52347345	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITGA2	NM_002203	exon7	c.T735C	p.Y245Y	CCAATATGGTGGG	.	165	50	158	0	.	226	C	52347345	T	C	52347345	2	2	150	1	0	0	0	0	0	0	0	1	7875	1471	51	2		2	ITGA2	5	52347345	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	25466047	52347345	128567915	77	19245											
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54442574	54442574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDC20B	NM_001170402	exon3	c.A237C	p.Q79H	TTGACTTTGCTGC	.	114	42	125	0	.	90	G	54442574	T	G	54442574	3	3	150	1	0	0	0	0	1	0	0	0	3060	1838	64	5	1362	5	CDC20B	5	54442574	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2095229	54442574	126472686	78	19246											
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	54619962	54619962	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SKIV2L2	NM_015360	exon3	c.T275A	p.L92X	TAAGTTTGGCAGA	.	115	51	85	0	.	92	A	54619962	T	A	54619962	4	1	150	1	0	0	0	0	0	1	0	0	14360	1821	63	4	285	4	SKIV2L2	5	54619962	Nonsense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	177388	54619962	126295298	79	19247											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55259985	55259985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IL6ST	NM_175767	exon6	c.C647A	p.P216H	TATACAGGATCAA	.	225	78	198	0	.	290	T	55259985	G	T	55259985	3	4	150	1	0	0	0	0	1	0	0	0	7703	1000	35	3	2157	3	IL6ST	5	55259985	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	640023	55259985	125655275	80	19248											
PLK2	10769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	57752800	57752800	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLK2	NM_006622	exon8	c.A1128G	p.K376K	TTTGTCTTTTTTG	.	145	53	96	0	.	409	C	57752800	T	C	57752800	2	2	150	1	0	0	0	0	0	0	0	1	12096	1606	56	2		2	PLK2	5	57752800	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2492815	57752800	123162460	81	19249											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72377662	72377662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FCHO2	NM_138782	exon23	c.A2033C	p.K678T	ACTGGAAATGTAG	.	151	51	153	0	.	23	C	72377662	A	C	72377662	3	2	150	1	0	0	0	0	1	0	0	0	5788	14	1	5	2123	5	FCHO2	5	72377662	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	14624862	72377662	108537598	82	19250											
SSBP2	23635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80762867	80762867	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SSBP2	NM_001256732	exon9	c.A588T	p.S196S	CTGTAATGATAAC	.	204	74	250	1	.	223	A	80762867	T	A	80762867	2	1	150	1	0	0	0	0	0	0	0	1	15179	1479	51	4		4	SSBP2	5	80762867	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8385205	80762867	100152393	83	19251											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90079723	90079723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR98	NM_032119	exon67	c.T13502C	p.L4501P	GCCACCTAGTGAG	.	116	52	95	0	.	103	C	90079723	T	C	90079723	3	2	150	1	0	0	0	0	1	0	0	0	6721	1522	53	2	13768	2	GPR98	5	90079723	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	9316856	90079723	90835537	84	19252	112	2									
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90079728	90079728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR98	NM_032119	exon67	c.A13507C	p.S4503R	CTAGTGAGCAGAA	.	119	21	103	0	.	103	C	90079728	A	C	90079728	3	2	150	1	0	0	0	0	1	0	0	0	6721	304	11	5	13773	5	GPR98	5	90079728	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	5	90079728	90835532	85	19253	112	2									
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95236720	95236720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELL2	NM_012081	exon6	c.A806G	p.Q269R	TCTCTTTGAAGCT	.	158	47	190	0	.	90	C	95236720	T	C	95236720	3	2	150	1	0	0	0	0	1	0	0	0	5063	1812	63	2	1144	2	ELL2	5	95236720	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	5156992	95236720	85678540	86	19254	113	2									
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	95236730	95236730	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELL2	NM_012081	exon6	c.A796T	p.K266X	GCTCTTTAAAAAC	.	149	45	192	0	.	90	A	95236730	T	A	95236730	4	1	150	1	0	0	0	0	0	1	0	0	5063	1763	61	4	1154	4	ELL2	5	95236730	Nonsense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	10	95236730	85678530	87	19255	113	2									
PAIP2	51247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138704424	138704429	+	In_Frame_Del	DEL	CAAGAG	CAAGAG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CAAGAG	CAAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PAIP2	NM_001033112	exon4	c.321_326del	p.107_109del	CCAGGTCAAGAGC	.	132	25	165	0	.	68	-	138704429	CAAGAG	-	138704424	7	5	150	1	0	1	0	1	0	0	0	0	11397	813	29	0	331	0	PAIP2	5	138704424	In_Frame_Del	DEL	CAAGAG	TCGA-G3-A3CK-01A-11D-A20W-10	43467694	138704424	42210836	88	19256											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	153065884	153065884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GRIA1	NM_001258021	exon8	c.C1159T	p.R387X	GGCATCCGAAAGG	.	101	14	102	0	.	96	T	153065884	C	T	153065884	4	4	150	1	0	0	0	0	0	1	0	0	6767	644	23	1	1159	1	GRIA1	5	153065884	Nonsense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	14361460	153065884	27849376	89	19257											
CCNG1	900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	162866370	162866370	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCNG1	NM_199246	exon3	c.A108C	p.L36L	GAGACTAATTGAG	.	133	47	171	0	.	725	C	162866370	A	C	162866370	2	2	150	1	0	0	0	0	0	0	0	1	2923	349	13	5		5	CCNG1	5	162866370	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	9800486	162866370	18048890	90	19258											
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170346578	170346578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RANBP17	NM_022897	exon11	c.T1235G	p.F412C	AGGCCTTTATCAC	.	193	73	190	0	.	524	G	170346578	T	G	170346578	3	3	150	1	0	0	0	0	1	0	0	0	13027	1841	64	5	1277	5	RANBP17	5	170346578	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	7480208	170346578	10568682	91	19259											
RPP40	10799	broad.mit.edu;bcgsc.ca	37	6	4996528	4996528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPP40	NM_006638	exon6	c.G686A	p.G229E	GGCGTTCCCTCCA	.	97	4	101	0	.	90	T	4996528	C	T	4996528	3	4	150	1	0	0	0	0	1	0	0	0	13614	855	30	3	417	3	RPP40	6	4996528	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10		4996528	166118539	92	19260											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15468853	15468853	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	JARID2	NM_004973	exon5	c.A574T	p.T192S	GATGAGACAGAAG	.	209	90	175	0	.	228	T	15468853	A	T	15468853	3	4	150	1	0	0	0	0	1	0	0	0	7945	275	10	4	592	4	JARID2	6	15468853	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	10472325	15468853	155646214	93	19261											
SLC44A4	80736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31833747	31833747	+	Missense_Mutation	SNP	C	C	T	rs149591801		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC44A4	NM_025257	exon14	c.G1390A	p.V464I	CGAGGACGCATTG	.	122	48	113	0	C|1.000;T|0.000	156	T	31833747	C	T	31833747	3	4	150	1	0	0	0	0	1	0	0	0	14638	536	19	1	774	1	SLC44A4	6	31833747	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	16364894	31833747	139281320	94	19262											
TAP1	6890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32821062	32821062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAP1	NM_000593	exon1	c.T532C	p.S178P	CCCATGAGATCAG	.	155	54	91	1	.	91	G	32821062	A	G	32821062	3	3	150	1	0	0	0	0	1	0	0	0	15547	304	11	2	1938	2	TAP1	6	32821062	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	987315	32821062	138294005	95	19263											
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32821435	32821435	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAP1	NM_000593	exon1	c.C159T	p.D53D	GTCCCGGTCCCGG	.	41	16	32	0	.	91	A	32821435	G	A	32821435	2	1	150	1	0	0	0	0	0	0	0	1	15547	1252	44	3		3	TAP1	6	32821435	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	373	32821435	138293632	96	19264											
RPS10	6204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34389539	34389539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPS10	NM_001203245	exon4	c.A368G	p.D123G	TCTCTGTCAGCTT	.	113	34	104	0	.	90	C	34389539	T	C	34389539	3	2	150	1	0	0	0	0	1	0	0	0	13620	1667	58	2	141	2	RPS10	6	34389539	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	1568104	34389539	136725528	97	19265											
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43174240	43174240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CUL9	NM_015089	exon26	c.A5204G	p.Y1735C	GTTTCTACAGCCA	.	183	70	210	1	.	529	G	43174240	A	G	43174240	3	3	150	1	0	0	0	0	1	0	0	0	4061	391	14	2	5302	2	CUL9	6	43174240	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	8784701	43174240	127940827	98	19266											
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83896734	83896734	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PGM3	NM_001199917	exon5	c.A534G	p.Q178Q	ATGGAATTGACCT	.	246	74	216	0	.	90	C	83896734	T	C	83896734	2	2	150	1	0	0	0	0	0	0	0	1	11800	1490	52	2		2	PGM3	6	83896734	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	40722494	83896734	87218333	99	19267											
GABRR1	2569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	89899880	89899888	+	Frame_Shift_Del	DEL	TCACAGCTT	TCACAGCTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCACAGCTT	TCACAGCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GABRR1	NM_002042	exon6	c.651_655del	p.217_219del	GTCTACTCACAGC	.	97	19	143	0	.	91	-	89899888	TCACAGCTT	-	89899880	7	5	150	1	0	1	0	1	0	0	0	0	6176	1566	54	0		0	GABRR1	6	89899880	Frame_Shift_Del	DEL	TCACAGCTT	TCGA-G3-A3CK-01A-11D-A20W-10	6003146	89899880	81215187	100	19268											
RNF146	81847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127608258	127608258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RNF146	NM_001242850	exon3	c.A500C	p.K167T	AGATTAAGCGAGA	.	90	23	77	0	.	226	C	127608258	A	C	127608258	3	2	150	1	0	0	0	0	1	0	0	0	13448	72	3	5	499	5	RNF146	6	127608258	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	37708378	127608258	43506809	101	19269											
SAMD3	154075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130536349	130536349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SAMD3	NM_001017373	exon3	c.A70G	p.R24G	GAAATCTATGAAC	.	127	40	100	0	.	91	C	130536349	T	C	130536349	3	2	150	1	0	0	0	0	1	0	0	0	13820	1530	53	2	1548	2	SAMD3	6	130536349	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2928091	130536349	40578718	102	19270											
KIAA1244	57221	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138608320	138608320	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1244	NM_020340	exon17	c.A2895C	p.Q965H	CACACAAGGTAAC	.	30	13	29	0	.	228	C	138608320	A	C	138608320	3	2	150	1	0	0	0	0	1	0	0	0	8217	86	3	5	2961	5	KIAA1244	6	138608320	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	8071971	138608320	32506747	103	19271											
MEOX2	4223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	15725601	15725601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	MEOX2,NS,carcinoma,+2	MEOX2	NM_005924	exon1	c.G427A	p.A143T	CGCACGCGGCCCC	.	82	35	48	0	.	515	T	15725601	C	T	15725601	3	4	150	1	0	0	0	0	1	0	0	0	9474	768	27	1	499	1	MEOX2	7	15725601	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10		15725601	143413062	104	19272											
HNRNPA2B1	3181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26237265	26237265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HNRNPA2B1	NM_031243	exon3	c.T130G	p.W44G	TTCCCCATTGTTC	.	158	40	201	1	.	70	C	26237265	A	C	26237265	3	2	150	1	0	0	0	0	1	0	0	0	7259	217	8	5	967	5	HNRNPA2B1	7	26237265	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	10511664	26237265	132901398	105	19273											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31793110	31793110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE1C	NM_001191058	exon19	c.C2198A	p.A733E	GAAGGTGCATAGG	.	179	70	149	0	.	94	T	31793110	G	T	31793110	3	4	150	1	0	0	0	0	1	0	0	0	11635	1334	46	3		3	PDE1C	7	31793110	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	5555845	31793110	127345553	106	19274											
EEPD1	80820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36336620	36336620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EEPD1	NM_030636	exon7	c.T1334C	p.I445T	TCATTATCTTAGG	.	110	42	91	0	.	68	C	36336620	T	C	36336620	3	2	150	1	0	0	0	0	1	0	0	0	4932	1435	50	2	1356	2	EEPD1	7	36336620	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	4543510	36336620	122802043	107	19275											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44579886	44579886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NPC1L1	NM_001101648	exon2	c.A110G	p.D37G	CATTCGTCATAGA	.	77	27	79	0	.	94	C	44579886	T	C	44579886	3	2	150	1	0	0	0	0	1	0	0	0	10571	1667	58	2	4045	2	NPC1L1	7	44579886	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8243266	44579886	114558777	108	19276											
IGFBP3	3486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45956856	45956856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IGFBP3	NM_001013398	exon2	c.G604A	p.D202N	GGGTATCTGTGCT	.	169	60	191	0	.	1009	T	45956856	C	T	45956856	3	4	150	1	0	0	0	0	1	0	0	0	7580	913	32	3	301	3	IGFBP3	7	45956856	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	1376970	45956856	113181807	109	19277											
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65425954	65425954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GUSB	NM_000181	exon12	c.T1886A	p.I629N	TTGGCAATCTTCC	.	276	85	308	0	.	90	T	65425954	A	T	65425954	3	4	150	1	0	0	0	0	1	0	0	0	6902	101	4	4	73	4	GUSB	7	65425954	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	19469098	65425954	93712709	110	19278											
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73105342	73105342	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WBSCR22	NM_001202560	exon6	c.C459A	p.L153L	TGTTCTCGTGAGT	.	329	117	361	0	.	90	A	73105342	C	A	73105342	2	1	150	1	0	0	0	0	0	0	0	1	17262	898	31	1		1	WBSCR22	7	73105342	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	7679388	73105342	86033321	111	19279											
UPK3B	80761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	76141019	76141019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UPK3B	NM_030570	exon2	c.C446T	p.A149V	TTCCGGCCTCCCC	.	416	109	415	0	.	90	T	76141019	C	T	76141019	3	4	150	1	0	0	0	0	1	0	0	0	17008	739	26	3	452	3	UPK3B	7	76141019	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	3035677	76141019	82997644	112	19280											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	78130892	78130893	+	Splice_Site	INS	-	-	CT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAGI2	NM_012301	exon6	c.965+2->AG	.	AAACTCACTCAAT	.	137	43	160	0	.	461	CT	78130893	-	CT	78130892	8	5	150	1	0	1	1	0	0	0	1	0	9191	173	6	0	3472	0	MAGI2	7	78130892	Splice_Site	INS	-	TCGA-G3-A3CK-01A-11D-A20W-10	1989873	78130892	81007771	113	19281											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	78130909	78130909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAGI2	NM_012301	exon5	c.A950C	p.E317A	TAGACTTCGCCCT	.	171	61	190	0	.	461	G	78130909	T	G	78130909	3	3	150	1	0	0	0	0	1	0	0	0	9191	1783	62	5	3489	5	MAGI2	7	78130909	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	17	78130909	81007754	114	19282											
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87148681	87148681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABCB1	NM_000927	exon24	c.T2888G	p.L963W	GCCACCAAGTAGG	.	122	13	95	0	.	582	C	87148681	A	C	87148681	3	2	150	1	0	0	0	0	1	0	0	0	40	131	5	5	978	5	ABCB1	7	87148681	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	9017772	87148681	71989982	115	19283											
DLX5	1749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96651649	96651649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DLX5	NM_005221	exon2	c.G388A	p.V130M	CATTCACCATTCT	.	67	33	79	0	.	515	T	96651649	C	T	96651649	3	4	150	1	0	0	0	0	1	0	0	0	4574	507	18	3	489	3	DLX5	7	96651649	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	9502968	96651649	62487014	116	19284											
CAPZA2	830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116544394	116544394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CAPZA2	NM_006136	exon5	c.T383A	p.L128Q	CTGCTCTGAGAGC	.	84	35	78	0	.	514	A	116544394	T	A	116544394	3	1	150	1	0	0	0	0	1	0	0	0	2641	1580	55	4	401	4	CAPZA2	7	116544394	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	19892745	116544394	42594269	117	19285											
SND1	27044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	127338946	127338946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SND1	NM_014390	exon4	c.A367G	p.I123V	GAAAACATTGCAG	.	100	5	85	0	.	92	G	127338946	A	G	127338946	3	3	150	1	0	0	0	0	1	0	0	0	14844	217	8	2	381	2	SND1	7	127338946	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	10794552	127338946	31799717	118	19286											
EPB49	2039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	21924617	21924617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPB49	NM_001978	exon3	c.A40G	p.S14G	CCCGGGAGCGTGA	.	200	62	227	0	.	90	G	21924617	A	G	21924617	3	3	150	1	0	0	0	0	1	0	0	0	5159	304	11	2	46	2	EPB49	8	21924617	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10		21924617	124439405	119	19287											
ELP3	55140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	28013470	28013470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELP3	NM_018091	exon11	c.T1112C	p.M371T	TTCCAATGCCTTT	.	197	11	192	0	.	90	C	28013470	T	C	28013470	3	2	150	1	0	0	0	0	1	0	0	0	5081	1464	51	2	1154	2	ELP3	8	28013470	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	6088853	28013470	118350552	120	19288											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28974375	28974375	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF13B	NM_015254	exon31	c.A3810G	p.R1270R	ACAGATTCTCTTG	.	234	74	262	0	.	22	C	28974375	T	C	28974375	2	2	150	1	0	0	0	0	0	0	0	1	8275	1780	62	2		2	KIF13B	8	28974375	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	960905	28974375	117389647	121	19289	114	2									
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28974384	28974384	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF13B	NM_015254	exon31	c.A3801G	p.L1267L	CTTGCGTAACACC	.	247	76	274	0	.	22	C	28974384	T	C	28974384	2	2	150	1	0	0	0	0	0	0	0	1	8275	1635	57	2		2	KIF13B	8	28974384	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	9	28974384	117389638	122	19290	114	2									
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48856412	48856412	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKDC	NM_001081640	exon10	c.808+1G>T	.	ATCCTACCTGAGG	.	133	40	136	0	.	1515	A	48856412	C	A	48856412	5	1	150	1	0	0	0	0	0	0	1	0	12521	521	18	3	11888	3	PRKDC	8	48856412	Splice_Site	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	19882028	48856412	97507610	123	19291											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52323847	52323847	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PXDNL	NM_144651	exon16	c.T2025C	p.R675R	CTTCACACGTTCC	.	227	71	179	0	.	70	G	52323847	A	G	52323847	2	3	150	1	0	0	0	0	0	0	0	1	12848	146	6	2		2	PXDNL	8	52323847	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	3467435	52323847	94040175	124	19292											
RRS1	23212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67341483	67341483	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RRS1	NM_015169	exon1	c.G117A	p.L39L	CAACCTGCTGGCG	.	202	77	161	0	.	90	A	67341483	G	A	67341483	2	1	150	1	0	0	0	0	0	0	0	1	13692	1306	46	3		3	RRS1	8	67341483	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	15017636	67341483	79022539	125	19293											
ARFGEF1	10565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68130369	68130369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARFGEF1	NM_006421	exon31	c.C4343T	p.A1448V	CATTCAGCTTTCT	.	138	46	196	0	.	294	A	68130369	G	A	68130369	3	1	150	1	0	0	0	0	1	0	0	0	852	971	34	3	1242	3	ARFGEF1	8	68130369	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	788886	68130369	78233653	126	19294											
LACTB2	51110	hgsc.bcm.edu;broad.mit.edu	37	8	71581340	71581340	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LACTB2	NM_016027	exon1	c.C16T	p.Q6X	CGCGCTGCAGTAC	.	98	7	101	0	.	227	A	71581340	G	A	71581340	4	1	150	1	0	0	0	0	0	1	0	0	8598	1328	46	3	878	3	LACTB2	8	71581340	Nonsense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	3450971	71581340	74782682	127	19295											
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	95892461	95892461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	INTS8	NM_017864	exon27	c.A2987C	p.X996S	ACTTTTAAGCAGT	.	107	36	88	0	.	90	C	95892461	A	C	95892461	3	2	150	1	0	0	0	0	1	0	0	0	7784	369	13	5	3093	5	INTS8	8	95892461	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	24311121	95892461	50471561	128	19296											
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104898096	104898096	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	RIMS2,colon,carcinoma,0	RIMS2	NM_001100117	exon4	c.T1269G	p.S423S	AAGTTCTTATGCA	.	67	28	81	0	.	279	G	104898096	T	G	104898096	2	3	150	1	0	0	0	0	0	0	0	1	13368	1596	56	5		5	RIMS2	8	104898096	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	9005635	104898096	41465926	129	19297											
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84300807	84300807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TLE1	NM_005077	exon3	c.A130G	p.K44E	CCAATTTAAGGCT	.	188	62	209	0	.	92	C	84300807	T	C	84300807	3	2	150	1	0	0	0	0	1	0	0	0	15935	1763	61	2	2254	2	TLE1	9	84300807	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10		84300807	56912624	130	19298											
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115805892	115805892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFP37	NM_003408	exon4	c.C1006G	p.L336V	CAACAAGGTGTGA	.	128	46	177	0	.	92	C	115805892	G	C	115805892	3	2	150	1	0	0	0	0	1	0	0	0	17645	1000	35	4	890	4	ZFP37	9	115805892	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	31505085	115805892	25407539	131	19299											
ZNF618	114991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116770657	116770657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF618	NM_133374	exon7	c.C578T	p.A193V	ACCGGGCAGGTAA	.	112	34	123	0	.	22	T	116770657	C	T	116770657	3	4	150	1	0	0	0	0	1	0	0	0	18039	710	25	3	604	3	ZNF618	9	116770657	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	964765	116770657	24442774	132	19300											
RPL35	11224	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	127622525	127622525	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPL35	NM_007209	exon3	c.C159T	p.S53S	GGCAATGGATTTC	.	112	36	116	1	.	91	A	127622525	G	A	127622525	2	1	150	1	0	0	0	0	0	0	0	1	13584	1335	47	3		3	RPL35	9	127622525	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	10851868	127622525	13590906	133	19301											
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136029633	136029633	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GBGT1	NM_021996	exon7	c.C375T	p.I125I	GGACTGGATGAAA	.	23	11	26	0	.	90	A	136029633	G	A	136029633	2	1	150	1	0	0	0	0	0	0	0	1	6272	1164	41	3		3	GBGT1	9	136029633	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	8407108	136029633	5183798	134	19302											
TUBAL3	79861	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5437356	5437356	+	Silent	SNP	G	G	A	rs141292428	byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TUBAL3	NM_024803	exon3	c.C330T	p.Y110Y	TCGCGCGTAATTG	.	112	31	134	0	G|0.998;A|0.002	91	A	5437356	G	A	5437356	2	1	150	1	0	0	0	0	0	0	0	1	16748	1140	40	1		1	TUBAL3	10	5437356	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10		5437356	130097391	135	19303											
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27337837	27337837	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ANKRD26	NM_014915	exon17	c.T1707G	p.T569T	ATCATCAGTAGCA	.	249	75	190	1	.	138	C	27337837	A	C	27337837	2	2	150	1	0	0	0	0	0	0	0	1	654	175	7	5		5	ANKRD26	10	27337837	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	21900481	27337837	108196910	136	19304											
ZNF22	7570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45499035	45499035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF22	NM_006963	exon2	c.C219A	p.H73Q	TCAACACCAGAAG	.	43	12	47	0	.	154	A	45499035	C	A	45499035	3	1	150	1	0	0	0	0	1	0	0	0	17771	506	18	3	221	3	ZNF22	10	45499035	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	18161198	45499035	90035712	137	19305											
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45891384	45891384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ALOX5	NM_001256153	exon3	c.G431T	p.R144L	AATATCGGTGAGT	.	132	42	150	0	.	228	T	45891384	G	T	45891384	3	4	150	1	0	0	0	0	1	0	0	0	540	1130	39	1	441	1	ALOX5	10	45891384	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	392349	45891384	89643363	138	19306											
LRRC27	80313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134161592	134161592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRRC27	NM_001143758	exon6	c.C658T	p.P220S	CAGGACCCAGAGG	.	106	41	93	0	.	91	T	134161592	C	T	134161592	3	4	150	1	0	0	0	0	1	0	0	0	8981	623	22	3	676	3	LRRC27	10	134161592	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	88270208	134161592	1373155	139	19307											
TNNI2	7136	broad.mit.edu;mdanderson.org	37	11	1860927	1860927	+	Translation_Start_Site	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TNNI2	.	.	.	.	CTCAGGATGGGAG	.	94	27	131	0	.	90	T	1860927	A	T	1860927	1	4	150	1	0	0	0	0	0	0	0	0	16324	333	12	4		4	TNNI2	11	1860927	Translation_Start_Site	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10		1860927	133145589	140	19308											
C11orf42	160298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6231167	6231167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C11orf42	NM_173525	exon2	c.A160C	p.K54Q	CTGGTAAAACAGT	.	105	34	105	0	.	91	C	6231167	A	C	6231167	3	2	150	1	0	0	0	0	1	0	0	0	1641	15	1	5	166	5	C11orf42	11	6231167	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	4370240	6231167	128775349	141	19309											
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6977459	6977459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF215	NM_013250	exon7	c.C1251A	p.N417K	CTTCAACCGACGT	.	43	14	38	0	.	514	A	6977459	C	A	6977459	3	1	150	1	0	0	0	0	1	0	0	0	17768	506	18	3	1269	3	ZNF215	11	6977459	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	746292	6977459	128029057	142	19310											
PDHX	8050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35006206	35006206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDHX	NM_003477	exon9	c.A1113C	p.K371N	AGATAAAGGCTTA	.	131	28	140	0	.	226	C	35006206	A	C	35006206	3	2	150	1	0	0	0	0	1	0	0	0	11667	69	3	5	1266	5	PDHX	11	35006206	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	28028747	35006206	100000310	143	19311											
TTC17	55761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	43411274	43411274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TTC17	NM_018259	exon3	c.A322G	p.N108D	AGACATAATAAAG	.	220	68	199	1	.	95	G	43411274	A	G	43411274	3	3	150	1	0	0	0	0	1	0	0	0	16681	362	13	2	332	2	TTC17	11	43411274	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	8405068	43411274	91595242	144	19312											
TMEM138	51524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61131920	61131920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM138	NM_016464	exon2	c.T58C	p.Y20H	CTGTCCTATGACC	.	152	50	132	0	.	90	C	61131920	T	C	61131920	3	2	150	1	0	0	0	0	1	0	0	0	16050	1522	53	2	60	2	TMEM138	11	61131920	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	17720646	61131920	73874596	145	19313											
TAF6L	10629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62554224	62554224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAF6L	NM_006473	exon11	c.G1325C	p.R442P	TCTACCGGGAGCT	.	78	29	47	0	.	93	C	62554224	G	C	62554224	3	2	150	1	0	0	0	0	1	0	0	0	15528	1116	39	4	1363	4	TAF6L	11	62554224	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1422304	62554224	72452292	146	19314											
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62931493	62931493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC22A25	NM_199352	exon9	c.G1447T	p.A483S	GGGAAGCCAGGGC	.	286	97	295	0	.	72	A	62931493	C	A	62931493	3	1	150	1	0	0	0	0	1	0	0	0	14454	739	26	3	200	3	SLC22A25	11	62931493	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	377269	62931493	72075023	147	19315											
SCYL1	57410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65293085	65293085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCYL1	NM_020680	exon2	c.A152C	p.K51T	ATGTGAAGCCTGG	.	122	38	109	0	.	333	C	65293085	A	C	65293085	3	2	150	1	0	0	0	0	1	0	0	0	13947	72	3	5	158	5	SCYL1	11	65293085	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	2361592	65293085	69713431	148	19316											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66618658	66618658	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PC	NM_000920	exon16	c.G2076C	p.A692A	TCCTGCCGCCTCC	.	66	28	48	0	.	228	G	66618658	C	G	66618658	2	3	150	1	0	0	0	0	0	0	0	1	11497	639	23	4		4	PC	11	66618658	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	1325573	66618658	68387858	149	19317											
RAD9A	5883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67163617	67163618	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	p.NL235KV	CTTGAATCTTAGC	.	142	51	145	0	.	.	AG	67163618	TC	AG	67163617	3	1	150	1	0	0	0	0	1	0	0	0	12995	1432	50	4	735	4	RAD9A	11	67163617	Missense_Mutation	DNP	TC	TCGA-G3-A3CK-01A-11D-A20W-10	544959	67163617	67842899	150	19318											
HSPB2	3316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111784419	111784419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HSPB2	NM_001541	exon2	c.T349C	p.F117L	CGAGAGTTCTGCC	.	145	60	128	1	.	659	C	111784419	T	C	111784419	3	2	150	1	0	0	0	0	1	0	0	0	7420	1725	60	2	355	2	HSPB2	11	111784419	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	44620802	111784419	23222097	151	19319											
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113619110	113619110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZW10	NM_004724	exon8	c.A958C	p.K320Q	ATGTTTTTTCATT	.	196	67	167	0	.	228	G	113619110	T	G	113619110	3	3	150	1	0	0	0	0	1	0	0	0	18244	1850	64	5	1417	5	ZW10	11	113619110	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	1834691	113619110	21387406	152	19320											
ZBTB16	7704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114113007	114113007	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZBTB16	NM_006006	exon5	c.C1572T	p.N524N	GTGCAACCGCACC	.	124	49	126	0	.	659	T	114113007	C	T	114113007	2	4	150	1	0	0	0	0	0	0	0	1	17523	506	18	3		3	ZBTB16	11	114113007	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	493897	114113007	20893509	153	19321											
NOP2	4839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6673088	6673088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOP2	NM_001258309	exon7	c.C598T	p.R200W	GCTTCCGAGCAGC	.	82	28	81	0	.	92	A	6673088	G	A	6673088	3	1	150	1	0	0	0	0	1	0	0	0	10538	1057	37	1	1983	1	NOP2	12	6673088	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10		6673088	127178807	154	19322											
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9221388	9221388	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	A2M	NM_000014	exon34	c.A4314G	p.P1438P	TCTTACTGGGACA	.	163	33	178	0	.	515	C	9221388	T	C	9221388	2	2	150	1	0	0	0	0	0	0	0	1	4	1567	55	2		2	A2M	12	9221388	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2548300	9221388	124630507	155	19323											
ALG10B	144245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	38714457	38714457	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ALG10B	NM_001013620	exon3	c.T864C	p.F288F	TCATTTTCCTCAA	.	382	137	343	0	.	93	C	38714457	T	C	38714457	2	2	150	1	0	0	0	0	0	0	0	1	512	1780	62	2		2	ALG10B	12	38714457	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	29493069	38714457	95137438	156	19324											
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	51323788	51323788	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	METTL7A	NM_014033	exon2	c.590delT	p.L197fs	GGCACCTTCTGTT	.	104	24	132	0	.	90	-	51323788	T	-	51323788	7	5	150	1	0	1	0	1	0	0	0	0	9505	1609	56	0	596	0	METTL7A	12	51323788	Frame_Shift_Del	DEL	T	TCGA-G3-A3CK-01A-11D-A20W-10	12609331	51323788	82528107	157	19325	115	2									
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51323795	51323795	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	METTL7A	NM_014033	exon2	c.T597C	p.F199F	TCTGTTTGATGGG	.	97	26	112	0	.	90	C	51323795	T	C	51323795	2	2	150	1	0	0	0	0	0	0	0	1	9505	1809	63	2		2	METTL7A	12	51323795	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	7	51323795	82528100	158	19326	115	2									
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53227630	53227630	+	Missense_Mutation	SNP	G	G	A	rs140167313		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KRT79	NM_175834	exon1	c.C415T	p.R139C	GAGTGCGCACTCG	.	182	65	190	0	G|0.999;A|0.000	72	A	53227630	G	A	53227630	3	1	150	1	0	0	0	0	1	0	0	0	8492	1087	38	1	1228	1	KRT79	12	53227630	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1903835	53227630	80624265	159	19327											
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56708923	56708923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNPY2	NM_014255	exon2	c.C79T	p.H27Y	CACAGTGGAGATC	.	136	53	125	0	.	68	A	56708923	G	A	56708923	3	1	150	1	0	0	0	0	1	0	0	0	3628	1348	47	3	489	3	CNPY2	12	56708923	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	3481293	56708923	77142972	160	19328											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57601983	57601983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRP1	NM_002332	exon77	c.G12022A	p.V4008M	ATTGTGGTGGACC	.	128	37	108	0	.	596	A	57601983	G	A	57601983	3	1	150	1	0	0	0	0	1	0	0	0	8951	1261	44	3	12328	3	LRP1	12	57601983	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	893060	57601983	76249912	161	19329											
DDIT3	1649	broad.mit.edu;bcgsc.ca	37	12	57911095	57911095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	DDIT3,brain,glioma,-1	DDIT3	NM_001195054	exon3	c.A164T	p.D55V	TTTTCATCTGAAG	.	75	5	87	0	.	1171	A	57911095	T	A	57911095	3	1	150	1	0	0	0	0	1	0	0	0	4330	1435	50	4	422	4	DDIT3	12	57911095	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	309112	57911095	75940800	162	19330											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62929480	62929480	+	Missense_Mutation	SNP	T	T	C	rs201313378	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MON2	NM_015026	exon14	c.T1891C	p.S631P	ACACTTTCCAACA	.	180	61	206	0	T|0.999;G|0.001	514	C	62929480	T	C	62929480	3	2	150	1	0	0	0	0	1	0	0	0	9700	1783	62	2	1945	2	MON2	12	62929480	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	5018385	62929480	70922415	163	19331											
THAP2	83591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72070666	72070666	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	THAP2	NM_031435	exon3	c.C465T	p.C155C	AACTTGCCTACAA	.	170	55	166	1	.	91	T	72070666	C	T	72070666	2	4	150	1	0	0	0	0	0	0	0	1	15841	747	26	3		3	THAP2	12	72070666	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	9141186	72070666	61781229	164	19332											
PHLDA1	22822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	76425350	76425350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PHLDA1	NM_007350	exon1	c.G172A	p.D58N	TGCCGTCCTCTTG	.	155	66	122	0	.	90	T	76425350	C	T	76425350	3	4	150	1	0	0	0	0	1	0	0	0	11848	855	30	3	1037	3	PHLDA1	12	76425350	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	4354684	76425350	57426545	165	19333											
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104698075	104698075	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001008394	exon1	c.C363T	p.D121D	TTGTGACTTTCTG	.	251	80	218	0	.	.	T	104698075	C	T	104698075	2	4	150	1	0	0	0	0	0	0	0	1	4989	564	20	3		3	EID3	12	104698075	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	28272725	104698075	29153820	166	19334											
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108932816	108932816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SART3	NM_014706	exon7	c.T956G	p.F319C	ATCTCAAAATCGA	.	162	63	145	0	.	91	C	108932816	A	C	108932816	3	2	150	1	0	0	0	0	1	0	0	0	13847	14	1	5	1987	5	SART3	12	108932816	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	4234741	108932816	24919079	167	19335											
SH2B3	10019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111884570	111884570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SH2B3	NM_005475	exon3	c.A746C	p.K249T	GGCCCAAGCTACA	.	125	48	128	1	.	91	C	111884570	A	C	111884570	3	2	150	1	0	0	0	0	1	0	0	0	14229	72	3	5	752	5	SH2B3	12	111884570	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	2951754	111884570	21967325	168	19336											
RXFP2	122042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32371491	32371491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RXFP2	NM_130806	exon17	c.A1940C	p.D647A	TCTCTGATGCCAT	.	229	94	186	0	.	90	C	32371491	A	C	32371491	3	2	150	1	0	0	0	0	1	0	0	0	13760	333	12	5	2006	5	RXFP2	13	32371491	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10		32371491	82798387	169	19337											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	39263846	39263886	+	Frame_Shift_Del	DEL	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FREM2	NM_207361	exon1	c.2365_2405del	p.789_802del	AGACCCCCGGGTC	.	77	14	95	0	.	100	-	39263886	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	-	39263846	7	5	150	1	0	1	0	1	0	0	0	0	6045	623	22	0	2367	0	FREM2	13	39263846	Frame_Shift_Del	DEL	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	TCGA-G3-A3CK-01A-11D-A20W-10	6892355	39263846	75906032	170	19338											
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48832330	48832330	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITM2B	NM_021999	exon4	c.T522C	p.V174V	CATTGTTATGCCA	.	231	12	206	0	.	90	C	48832330	T	C	48832330	2	2	150	1	0	0	0	0	0	0	0	1	7913	1741	61	2		2	ITM2B	13	48832330	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	9568484	48832330	66337548	171	19339											
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99853763	99853763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UBAC2	NM_177967	exon1	c.G98A	p.G33E	GCGAGGGAGCGCA	.	501	166	503	0	.	91	A	99853763	G	A	99853763	3	1	150	1	0	0	0	0	1	0	0	0	16832	1174	41	3	135	3	UBAC2	13	99853763	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	51021433	99853763	15316115	172	19340											
TNFSF13B	10673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108922722	108922722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TNFSF13B	NM_006573	exon2	c.C374T	p.S125F	GCAACTCCAGTCA	.	93	33	97	0	.	659	T	108922722	C	T	108922722	3	4	150	1	0	0	0	0	1	0	0	0	16303	855	30	3	380	3	TNFSF13B	13	108922722	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	9068959	108922722	6247156	173	19341											
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20215878	20215878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	OR4Q3	NM_172194	exon1	c.T292C	p.C98R	TCAGGATGCCTGG	.	92	38	65	0	.	71	C	20215878	T	C	20215878	3	2	150	1	0	0	0	0	1	0	0	0	11081	1464	51	2	294	2	OR4Q3	14	20215878	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10		20215878	87133662	174	19342											
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24031766	24031766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AP1G2	NM_003917	exon15	c.1447delG	p.E483fs	CATACTCCCCAAT	.	120	37	116	0	.	45	-	24031766	C	-	24031766	7	5	150	1	0	1	0	1	0	0	0	0	733	864	30	0	942	0	AP1G2	14	24031766	Frame_Shift_Del	DEL	C	TCGA-G3-A3CK-01A-11D-A20W-10	3815888	24031766	83317774	175	19343											
MBIP	51562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36785921	36785921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MBIP	NM_016586	exon2	c.A227C	p.E76A	TGTTGTTCAAGTG	.	230	63	217	0	.	658	G	36785921	T	G	36785921	3	3	150	1	0	0	0	0	1	0	0	0	9349	1783	62	5	839	5	MBIP	14	36785921	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	12754155	36785921	70563619	176	19344											
FSCB	84075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44974659	44974659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FSCB	NM_032135	exon1	c.C1532T	p.P511L	GCTAATGGAGATT	.	100	32	148	1	.	587	A	44974659	G	A	44974659	3	1	150	1	0	0	0	0	1	0	0	0	6066	1348	47	3	949	3	FSCB	14	44974659	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	8188738	44974659	62374881	177	19345											
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58895077	58895077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0586	NM_001244189	exon2	c.A131G	p.H44R	GAGATCATTTGGT	.	257	82	225	0	.	23	G	58895077	A	G	58895077	3	3	150	1	0	0	0	0	1	0	0	0	8186	217	8	2	97	2	KIAA0586	14	58895077	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	13920418	58895077	48454463	178	19346											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65008467	65008467	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HSPA2	NM_021979	exon1	c.C900T	p.I300I	GTCCATCACGCGC	.	89	34	65	0	.	226	T	65008467	C	T	65008467	2	4	150	1	0	0	0	0	0	0	0	1	7411	816	29	3		3	HSPA2	14	65008467	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	6113390	65008467	42341073	179	19347											
FCF1	51077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75190045	75190045	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FCF1	NM_015962	exon5	c.A363C	p.L121L	GGCTCTAAGGTAG	.	137	48	198	0	.	91	C	75190045	A	C	75190045	2	2	150	1	0	0	0	0	0	0	0	1	5777	349	13	5		5	FCF1	14	75190045	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	10181578	75190045	32159495	180	19348											
SPTLC2	9517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78021746	78021746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPTLC2	NM_004863	exon8	c.G1073A	p.G358D	ACCACACCCCGGC	.	127	46	164	0	.	92	T	78021746	C	T	78021746	3	4	150	1	0	0	0	0	1	0	0	0	15123	507	18	3	635	3	SPTLC2	14	78021746	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	2831701	78021746	29327794	181	19349											
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	93154522	93154523	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	p.P962S	CTACCGGCCCCTG	.	41	19	29	0	.	.	TT	93154523	GC	TT	93154522	3	4	150	1	0	0	0	0	1	0	0	0	13373	1190	42	3	2921	3	RIN3	14	93154522	Missense_Mutation	DNP	GC	TCGA-G3-A3CK-01A-11D-A20W-10	15132776	93154522	14195018	182	19350											
PACS2	23241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105818768	105818768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PACS2	NM_001100913	exon3	c.A261C	p.Q87H	TGGACAAGTGGAG	.	205	72	212	0	.	69	C	105818768	A	C	105818768	3	2	150	1	0	0	0	0	1	0	0	0	11373	69	3	5	271	5	PACS2	14	105818768	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	12664246	105818768	1530772	183	19351											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	28482110	28482110	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC2	NM_004667	exon26	c.C4002T	p.A1334A	CTTACTGGCACAT	.	306	107	300	0	.	234	A	28482110	G	A	28482110	2	1	150	1	0	0	0	0	0	0	0	1	7058	1362	47	3		3	HERC2	15	28482110	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10		28482110	74049282	184	19352											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	30011153	30011153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TJP1	NM_003257	exon21	c.A3193G	p.S1065G	TATAGCTTGAGGA	.	355	103	424	0	.	95	C	30011153	T	C	30011153	3	2	150	1	0	0	0	0	1	0	0	0	15926	1609	56	2	2085	2	TJP1	15	30011153	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	1529043	30011153	72520239	185	19353											
GNB5	10681	broad.mit.edu;bcgsc.ca	37	15	52416767	52416767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GNB5	NM_016194	exon12	c.T1079C	p.V360A	ATGGAGACCCGGG	.	188	10	168	0	.	227	G	52416767	A	G	52416767	3	3	150	1	0	0	0	0	1	0	0	0	6521	275	10	2	116	2	GNB5	15	52416767	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	22405614	52416767	50114625	186	19354											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63943568	63943568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC1	NM_003922	exon53	c.C10430T	p.A3477V	TCCTCAGCATCCC	.	75	32	90	0	.	666	A	63943568	G	A	63943568	3	1	150	1	0	0	0	0	1	0	0	0	7057	971	34	3	4259	3	HERC1	15	63943568	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	11526801	63943568	38587824	187	19355											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63967194	63967194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC1	NM_003922	exon38	c.A7193T	p.Y2398F	GTGAGATATGTTA	.	260	83	317	0	.	666	A	63967194	T	A	63967194	3	1	150	1	0	0	0	0	1	0	0	0	7057	1406	49	4	7556	4	HERC1	15	63967194	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	23626	63967194	38564198	188	19356											
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78837279	78837279	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PSMA4	NM_001102667	exon6	c.A356T	p.Q119L	TCAAACAAGCTTA	.	73	23	93	0	.	90	T	78837279	A	T	78837279	3	4	150	1	0	0	0	0	1	0	0	0	12669	130	5	4	374	4	PSMA4	15	78837279	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	14870085	78837279	23694113	189	19357											
CIB1	10519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90773726	90773726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CIB1	NM_006384	exon7	c.T566G	p.I189S	AGGACAATCTTAA	.	166	56	178	0	.	130	C	90773726	A	C	90773726	3	2	150	1	0	0	0	0	1	0	0	0	3420	101	4	5	13	5	CIB1	15	90773726	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	11936447	90773726	11757666	190	19358											
RAB40C	57799	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	677600	677600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAB40C	NM_021168	exon6	c.G824C	p.R275P	GCTCGCGGAGTAA	.	81	24	90	0	.	227	C	677600	G	C	677600	3	2	150	1	0	0	0	0	1	0	0	0	12942	1116	39	4	846	4	RAB40C	16	677600	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10		677600	89677153	191	19359											
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2140513	2140513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PKD1	NM_001009944	exon45	c.A12217G	p.T4073A	ACAGGGTAGAGAG	.	76	28	52	0	.	91	C	2140513	T	C	2140513	3	2	150	1	0	0	0	0	1	0	0	0	11963	1638	57	2	702	2	PKD1	16	2140513	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	1462913	2140513	88214240	192	19360											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10273990	10273990	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GRIN2A	NM_000833	exon3	c.A279G	p.A93A	GATGCGTGCCCCG	.	178	35	170	0	.	349	C	10273990	T	C	10273990	2	2	150	1	0	0	0	0	0	0	0	1	6779	1683	59	2		2	GRIN2A	16	10273990	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8133477	10273990	80080763	193	19361											
LITAF	9516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	11647418	11647418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LITAF	NM_001136473	exon3	c.G348T	p.W116C	GGACAGCCAGGTC	.	50	12	48	0	.	227	A	11647418	C	A	11647418	3	1	150	1	0	0	0	0	1	0	0	0	8830	740	26	3	231	3	LITAF	16	11647418	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	1373428	11647418	78707335	194	19362											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27788950	27788950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0556	NM_015202	exon26	c.T4571G	p.L1524R	ACCTGCTTGTGTA	.	95	33	122	0	.	141	G	27788950	T	G	27788950	3	3	150	1	0	0	0	0	1	0	0	0	8183	1609	56	5	4673	5	KIAA0556	16	27788950	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	16141532	27788950	62565803	195	19363											
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48596057	48596057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	N4BP1	NM_153029	exon2	c.C497T	p.A166V	GCATGGGCTTCAA	.	178	58	147	0	.	22	A	48596057	G	A	48596057	3	1	150	1	0	0	0	0	1	0	0	0	10109	1203	42	3	2217	3	N4BP1	16	48596057	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	20807107	48596057	41758696	196	19364											
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53358774	53358774	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CHD9	NM_025134	exon39	c.A8613C	p.S2871S	GTCGTCATCTGAG	.	294	97	284	1	.	272	C	53358774	A	C	53358774	2	2	150	1	0	0	0	0	0	0	0	1	3332	204	8	5		5	CHD9	16	53358774	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	4762717	53358774	36995979	197	19365											
AMFR	267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	56443342	56443342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AMFR	NM_001144	exon3	c.T507C	p.F169F	ATATTCAAATCGA	.	66	19	71	0	.	1009	G	56443342	A	G	56443342	2	3	150	1	0	0	0	0	0	0	0	1	571	127	5	2		2	AMFR	16	56443342	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	3084568	56443342	33911411	198	19366											
TAF1C	9013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84216853	84216853	+	Silent	SNP	C	C	T	rs187518651		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAF1C	NM_001243156	exon5	c.G405A	p.A135A	CACCCCCGCTCCC	.	67	26	62	0	C|0.999;T|0.000	91	T	84216853	C	T	84216853	2	4	150	1	0	0	0	0	0	0	0	1	15518	639	23	1		1	TAF1C	16	84216853	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	27773511	84216853	6137900	199	19367											
VPS53	55275	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	531471	531479	+	Frame_Shift_Del	DEL	TCTAGTAAA	TCTAGTAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTAGTAAA	TCTAGTAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VPS53	NM_001128159	exon9	c.688_688del	p.230_230del	CTGGTCTCTAGTA	.	72	20	103	0	.	90	-	531479	TCTAGTAAA	-	531471	7	5	150	1	0	1	0	1	0	0	0	0	17212	1565	54	0	1881	0	VPS53	17	531471	Frame_Shift_Del	DEL	TCTAGTAAA	TCGA-G3-A3CK-01A-11D-A20W-10		531471	80663739	200	19368											
ZNF594	84622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5085970	5085970	+	Missense_Mutation	SNP	G	G	T	rs181984106	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF594	NM_032530	exon2	c.C1582A	p.R528S	CTGTGCGCCAAAT	.	160	61	166	0	G|0.999;A|0.001	71	T	5085970	G	T	5085970	3	4	150	1	0	0	0	0	1	0	0	0	18021	1087	38	1	845	1	ZNF594	17	5085970	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	4554499	5085970	76109240	201	19369											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721651	7721651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNAH2	NM_020877	exon68	c.T10409C	p.I3470T	TGCGCATTGGCGA	.	236	70	185	0	.	102	C	7721651	T	C	7721651	3	2	150	1	0	0	0	0	1	0	0	0	4602	1493	52	2	10679	2	DNAH2	17	7721651	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2635681	7721651	73473559	202	19370											
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12642602	12642602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MYOCD	NM_001146312	exon7	c.T674G	p.L225R	AGGGGCTTGGCCC	.	55	25	57	0	.	93	G	12642602	T	G	12642602	3	3	150	1	0	0	0	0	1	0	0	0	10087	1609	56	5	700	5	MYOCD	17	12642602	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	4920951	12642602	68552608	203	19371											
KSR1	8844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	25928943	25928943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KSR1	NM_014238	exon12	c.A1124C	p.K375T	GCTGGAAATGCCT	.	143	42	126	0	.	964	C	25928943	A	C	25928943	3	2	150	1	0	0	0	0	1	0	0	0	8581	14	1	5	1158	5	KSR1	17	25928943	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	13286341	25928943	55266267	204	19372											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29496954	29496954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NF1	NM_001128147	exon5	c.T525C	p.H175H	TGTTCATGATATA	.	84	28	64	0	.	3353	C	29496954	T	C	29496954	2	2	150	1	0	0	0	0	0	0	0	1	10356	1461	51	2		2	NF1	17	29496954	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	3568011	29496954	51698256	205	19373											
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35631111	35631111	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACACA	NM_198834	exon9	c.T981C	p.Y327Y	TTTCACATAACCT	.	163	52	165	0	.	154	G	35631111	A	G	35631111	2	3	150	1	0	0	0	0	0	0	0	1	106	224	8	2		2	ACACA	17	35631111	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	6134157	35631111	45564099	206	19374											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140461	39140461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_182497	exon3	c.C65T	p.A22V	GCAGGTGCACAAC	.	140	59	109	0	.	.	A	39140461	G	A	39140461	3	1	150	1	0	0	0	0	1	0	0	0	8478	1319	46	3	1258	3	KRT40	17	39140461	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	3509350	39140461	42054749	207	19375											
ZNF652	22834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47390068	47390068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF652	NM_001145365	exon3	c.A1040G	p.H347R	ACCATGTGTTTCC	.	121	32	80	0	.	91	C	47390068	T	C	47390068	3	2	150	1	0	0	0	0	1	0	0	0	18062	1696	59	2	796	2	ZNF652	17	47390068	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8249607	47390068	33805142	208	19376											
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47781491	47781491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC35B1	NM_005827	exon6	c.A626C	p.N209T	CAAAGGTTGATGT	.	395	127	279	0	.	90	G	47781491	T	G	47781491	3	3	150	1	0	0	0	0	1	0	0	0	14575	1725	60	5	358	5	SLC35B1	17	47781491	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	391423	47781491	33413719	209	19377											
PDK2	5164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48174927	48174927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDK2	NM_002611	exon2	c.T259C	p.W87R	CAGAGCTGGTGAG	.	62	16	42	0	.	803	C	48174927	T	C	48174927	3	2	150	1	0	0	0	0	1	0	0	0	11676	1594	55	2	265	2	PDK2	17	48174927	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	393436	48174927	33020283	210	19378											
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56584192	56584192	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MTMR4	NM_004687	exon10	c.A903C	p.A301A	AGGAGCTGCTGTG	.	114	18	80	0	.	91	G	56584192	T	G	56584192	2	3	150	1	0	0	0	0	0	0	0	1	9946	1567	55	5		5	MTMR4	17	56584192	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8409265	56584192	24611018	211	19379											
PECAM1	5175	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	62407077	62407077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_000442	exon1	c.G7A	p.V3M	TTTCCACGGCATC	.	101	42	72	0	.	.	T	62407077	C	T	62407077	3	4	150	1	0	0	0	0	1	0	0	0	11715	551	19	1		1	PECAM1	17	62407077	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	5822885	62407077	18788133	212	19380											
AXIN2	8313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	63534326	63534326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AXIN2	NM_004655	exon5	c.C1195T	p.R399X	CCTCTCGGATCTG	.	204	55	173	0	.	658	A	63534326	G	A	63534326	4	1	150	1	0	0	0	0	0	1	0	0	1237	1124	39	1	1364	1	AXIN2	17	63534326	Nonsense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1127249	63534326	17660884	213	19381											
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72518964	72518964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CD300LB	NM_174892	exon4	c.G630C	p.K210N	AGACCCCTTCAAC	.	307	86	229	0	.	91	G	72518964	C	G	72518964	3	3	150	1	0	0	0	0	1	0	0	0	2999	680	24	4	90	4	CD300LB	17	72518964	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	8984638	72518964	8676246	214	19382											
CCDC137	339230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79639185	79639185	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCDC137	NM_199287	exon5	c.G660A	p.Q220Q	GGACCAGGTAAGT	.	140	77	128	0	.	69	A	79639185	G	A	79639185	2	1	150	1	0	0	0	0	0	0	0	1	2771	1014	35	3		3	CCDC137	17	79639185	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	7120221	79639185	1556025	215	19383											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80037282	80037282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FASN	NM_004104	exon42	c.C7349T	p.T2450M	CCACCCGTCTTGG	.	185	51	150	0	.	90	A	80037282	G	A	80037282	3	1	150	1	0	0	0	0	1	0	0	0	5683	1145	40	1	194	1	FASN	17	80037282	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	398097	80037282	1157928	216	19384											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80039907	80039907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FASN	NM_004104	exon36	c.A6141C	p.K2047N	CCGGCGTTTCTCA	.	76	16	39	0	.	90	G	80039907	T	G	80039907	3	3	150	1	0	0	0	0	1	0	0	0	5683	1722	60	5	1426	5	FASN	17	80039907	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	2625	80039907	1155303	217	19385											
ENOSF1	55556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	683313	683313	+	Missense_Mutation	SNP	A	A	C	rs144642877	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ENOSF1	NM_202758	exon11	c.T872G	p.F291C	GGCTTGAACTTGG	.	266	90	238	0	A|1.000;T|0.000	91	C	683313	A	C	683313	3	2	150	1	0	0	0	0	1	0	0	0	5125	246	9	5	546	5	ENOSF1	18	683313	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10		683313	77393935	218	19386											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21418835	21418835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LAMA3	NM_001127717	exon26	c.A3184G	p.N1062D	TTTGTCAATCAAA	.	258	74	314	0	.	100	G	21418835	A	G	21418835	3	3	150	1	0	0	0	0	1	0	0	0	8607	130	5	2	3286	2	LAMA3	18	21418835	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	20735522	21418835	56658413	219	19387											
ZNF397	84307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	32826113	32826113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF397	NM_001135178	exon4	c.C1444T	p.Q482X	CCTTATCAGTGTA	.	169	64	172	0	.	90	T	32826113	C	T	32826113	4	4	150	1	0	0	0	0	0	1	0	0	17880	827	29	3	1454	3	ZNF397	18	32826113	Nonsense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	11407278	32826113	45251135	220	19388											
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33267146	33267146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GALNT1	NM_020474	exon5	c.G856C	p.V286L	CTTCCTGTCAGGT	.	88	21	135	0	.	92	C	33267146	G	C	33267146	3	2	150	1	0	0	0	0	1	0	0	0	6207	1377	48	4	874	4	GALNT1	18	33267146	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	441033	33267146	44810102	221	19389											
SCAMP4	113178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1924232	1924242	+	Frame_Shift_Del	DEL	GCCCGAGTACC	GCCCGAGTACC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCCCGAGTACC	GCCCGAGTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCAMP4	NM_079834	exon7	c.639_649del	p.213_217del	CAGCCTGCCCGAG	.	37	13	77	0	.	68	-	1924242	GCCCGAGTACC	-	1924232	7	5	150	1	0	1	0	1	0	0	0	0	13873	1306	46	0	661	0	SCAMP4	19	1924232	Frame_Shift_Del	DEL	GCCCGAGTACC	TCGA-G3-A3CK-01A-11D-A20W-10		1924232	57204751	222	19390											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8211044	8211044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FBN3	NM_032447	exon3	c.G316A	p.G106R	GCGTCCCATCCGC	.	269	15	274	0	.	100	T	8211044	C	T	8211044	3	4	150	1	0	0	0	0	1	0	0	0	5704	594	21	3	8357	3	FBN3	19	8211044	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	6286812	8211044	50917939	223	19391											
ACTL9	284382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8807893	8807893	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACTL9	NM_178525	exon1	c.C1159T	p.L387L	AGGCCAGGATGGA	.	102	29	107	0	.	154	A	8807893	G	A	8807893	2	1	150	1	0	0	0	0	0	0	0	1	203	991	35	3		3	ACTL9	19	8807893	Silent	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	596849	8807893	50321090	224	19392											
ZNF560	147741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9578276	9578276	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF560	NM_152476	exon10	c.A1347G	p.G449G	CAAATGTCCAAAA	.	131	56	146	0	.	158	C	9578276	T	C	9578276	2	2	150	1	0	0	0	0	0	0	0	1	17988	1654	58	2		2	ZNF560	19	9578276	Silent	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	770383	9578276	49550707	225	19393											
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10531543	10531543	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4A	NM_001111307	exon1	c.C103A	p.R35R	CTGTGGCGGCAGC	.	20	12	24	0	.	523	A	10531543	C	A	10531543	2	1	150	1	0	0	0	0	0	0	0	1	11639	759	27	1		1	PDE4A	19	10531543	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	953267	10531543	48597440	226	19394											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10602811	10602812	+	Frame_Shift_Ins	INS	-	-	CGTA	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KEAP1	NM_012289	exon3	c.767_768insTACG	p.D256fs	TCGCAGTCGTACT	.	102	18	84	0	.	637	CGTA	10602812	-	CGTA	10602811	7	5	150	1	0	1	1	0	0	0	0	0	8141	1667	58	0	1123	0	KEAP1	19	10602811	Frame_Shift_Ins	INS	-	TCGA-G3-A3CK-01A-11D-A20W-10	71268	10602811	48526172	227	19395											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10610398	10610398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KEAP1	NM_012289	exon2	c.C312A	p.S104R	GACAGGGCTGGAT	.	157	55	145	0	.	637	T	10610398	G	T	10610398	3	4	150	1	0	0	0	0	1	0	0	0	8141	1194	42	3	1582	3	KEAP1	19	10610398	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	7587	10610398	48518585	228	19396											
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14261860	14261860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LPHN1	NM_001008701	exon24	c.C4250A	p.P1417H	GGGCCGGGGGGTG	.	91	42	40	0	.	523	T	14261860	G	T	14261860	3	4	150	1	0	0	0	0	1	0	0	0	8915	1232	43	3	178	3	LPHN1	19	14261860	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	3651462	14261860	44867123	229	19397											
CCDC105	126402	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15121855	15121855	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCDC105	NM_173482	exon1	c.T218A	p.F73Y	GGCGCTTCCGCGT	.	51	6	54	1	.	91	A	15121855	T	A	15121855	3	1	150	1	0	0	0	0	1	0	0	0	2740	1783	62	4	220	4	CCDC105	19	15121855	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	859995	15121855	44007128	230	19398											
ZNF675	171392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	23837293	23837293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF675	NM_138330	exon4	c.A442C	p.K148Q	CATATTTATCACA	.	119	6	97	0	.	228	G	23837293	T	G	23837293	3	3	150	1	0	0	0	0	1	0	0	0	18079	1763	61	5	1268	5	ZNF675	19	23837293	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	8715438	23837293	35291690	231	19399											
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884388	36884388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFP82	NM_133466	exon5	c.A854C	p.K285T	CACTCTTTACACA	.	121	64	118	0	.	91	G	36884388	T	G	36884388	3	3	150	1	0	0	0	0	1	0	0	0	17650	1841	64	5	748	5	ZFP82	19	36884388	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	13047095	36884388	22244595	232	19400											
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37734483	37734484	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF383	NM_152604	exon5	c.1345_1346del	p.449_449del	GAAAAGCCCTATA	.	66	20	79	0	.	92	-	37734484	CC	-	37734483	7	5	150	1	0	1	0	1	0	0	0	0	17871	739	26	0	1359	0	ZNF383	19	37734483	Frame_Shift_Del	DEL	CC	TCGA-G3-A3CK-01A-11D-A20W-10	850095	37734483	21394500	233	19401											
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42599725	42599725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	POU2F2	NM_001207025	exon10	c.G926A	p.R309H	GCGAAGCGGACGT	.	77	11	88	0	.	227	T	42599725	C	T	42599725	3	4	150	1	0	0	0	0	1	0	0	0	12272	768	27	1	533	1	POU2F2	19	42599725	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	4865242	42599725	16529258	234	19402											
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45860557	45860557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ERCC2	NM_000400	exon15	c.A1450G	p.T484A	CCAGCGTCATGGT	.	169	66	179	0	.	848	C	45860557	T	C	45860557	3	2	150	1	0	0	0	0	1	0	0	0	5213	1667	58	2	868	2	ERCC2	19	45860557	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	3260832	45860557	13268426	235	19403											
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu	37	19	47214295	47214320	+	Frame_Shift_Del	DEL	GCTGTAGGCGGAAAATAGGGGTGGAT	GCTGTAGGCGGAAAATAGGGGTGGAT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCTGTAGGCGGAAAATAGGGGTGGAT	GCTGTAGGCGGAAAATAGGGGTGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKD2	NM_016457	exon3	c.380_380del	p.127_127del	GCCGAGGCTGTAG	.	111	14	189	0	.	759	-	47214320	GCTGTAGGCGGAAAATAGGGGTGGAT	-	47214295	7	5	150	1	0	1	0	1	0	0	0	0	12519	1217	42	0	2320	0	PRKD2	19	47214295	Frame_Shift_Del	DEL	GCTGTAGGCGGAAAATAGGGGTGGAT	TCGA-G3-A3CK-01A-11D-A20W-10	1353738	47214295	11914688	236	19404											
TEAD2	8463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49845749	49845749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TEAD2	NM_001256660	exon12	c.G1188C	p.Q396H	AGGCAGCTGCCGC	.	181	63	154	0	.	92	G	49845749	C	G	49845749	3	3	150	1	0	0	0	0	1	0	0	0	15736	796	28	4	175	4	TEAD2	19	49845749	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	2631454	49845749	9283234	237	19405											
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52538392	52538392	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF432	NM_014650	exon5	c.T540A	p.S180S	ACTTACAGAGAAT	.	100	30	81	0	.	154	T	52538392	A	T	52538392	2	4	150	1	0	0	0	0	0	0	0	1	17903	175	7	4		4	ZNF432	19	52538392	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	2692643	52538392	6590591	238	19406											
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56320455	56320455	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NLRP11	NM_145007	exon5	c.T1521G	p.L507L	TGTCTCAAGAATC	.	177	58	189	0	.	169	C	56320455	A	C	56320455	2	2	150	1	0	0	0	0	0	0	0	1	10473	117	5	5		5	NLRP11	19	56320455	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	3782063	56320455	2808528	239	19407											
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2633966	2633966	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOP56	NM_006392	exon3	c.C135G	p.I45M	CAGCATCGTTCGT	.	261	44	303	0	.	92	G	2633966	C	G	2633966	3	3	150	1	0	0	0	0	1	0	0	0	10539	874	31	4	145	4	NOP56	20	2633966	Missense_Mutation	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10		2633966	60391554	240	19408											
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33875240	33875240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FAM83C	NM_178468	exon4	c.C1342T	p.R448C	GGGAGCGAGGAAG	.	86	35	101	0	.	92	A	33875240	G	A	33875240	3	1	150	1	0	0	0	0	1	0	0	0	5635	1058	37	1	905	1	FAM83C	20	33875240	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	31241274	33875240	29150280	241	19409											
DLGAP4	22839	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35125206	35125206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DLGAP4	NM_014902	exon7	c.G1747C	p.E583Q	AGTACTGAGTCTG	.	178	61	177	1	.	94	C	35125206	G	C	35125206	3	2	150	1	0	0	0	0	1	0	0	0	4562	1291	45	4	1804	4	DLGAP4	20	35125206	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1249966	35125206	27900314	242	19410											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36848153	36848153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1755	NM_001029864	exon11	c.C2435T	p.A812V	GCAGTGGCTGCAG	.	97	25	86	0	.	95	A	36848153	G	A	36848153	3	1	150	1	0	0	0	0	1	0	0	0	8257	1203	42	3	1183	3	KIAA1755	20	36848153	Missense_Mutation	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1722947	36848153	26177367	243	19411											
TSHZ2	128553	broad.mit.edu;bcgsc.ca	37	20	51872734	51872734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TSHZ2	NM_173485	exon2	c.A2737G	p.T913A	GGCGGGACAAAAT	.	104	6	99	0	.	232	G	51872734	A	G	51872734	3	3	150	1	0	0	0	0	1	0	0	0	16621	275	10	2	2743	2	TSHZ2	20	51872734	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	15024581	51872734	11152786	244	19412											
C21orf91	54149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	19168929	19168942	+	Frame_Shift_Del	DEL	TCTGGACATTAGCC	TCTGGACATTAGCC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTGGACATTAGCC	TCTGGACATTAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C21orf91	NM_017447	exon3	c.621_634del	p.207_212del	GCTGGGTCTGGAC	.	254	50	261	0	.	91	-	19168942	TCTGGACATTAGCC	-	19168929	7	5	150	1	0	1	0	1	0	0	0	0	2134	1667	58	0	271	0	C21orf91	21	19168929	Frame_Shift_Del	DEL	TCTGGACATTAGCC	TCGA-G3-A3CK-01A-11D-A20W-10		19168929	28960966	245	19413											
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38117328	38117328	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SIM2	NM_005069	exon10	c.C1467T	p.C489C	TGAATGCCAGTGG	.	128	38	116	0	.	90	T	38117328	C	T	38117328	2	4	150	1	0	0	0	0	0	0	0	1	14324	747	26	3		3	SIM2	21	38117328	Silent	SNP	C	TCGA-G3-A3CK-01A-11D-A20W-10	18948399	38117328	10012567	246	19414											
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39671772	39671772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KCNJ15	NM_170736	exon3	c.A589G	p.S197G	TTGGTGATTCAGG	.	67	16	61	0	.	157	G	39671772	A	G	39671772	3	3	150	1	0	0	0	0	1	0	0	0	8049	333	12	2	591	2	KCNJ15	21	39671772	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	1554444	39671772	8458123	247	19415											
IGSF5	150084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	41160116	41160116	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IGSF5	NM_001080444	exon6	c.956+1G>A	.	TCAAAAGTAAGTT	.	197	10	186	0	.	68	A	41160116	G	A	41160116	5	1	150	1	0	0	0	0	0	0	1	0	7602	1043	36	3	979	3	IGSF5	21	41160116	Splice_Site	SNP	G	TCGA-G3-A3CK-01A-11D-A20W-10	1488344	41160116	6969779	248	19416											
ADRBK2	157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26117279	26117279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADRBK2	NM_005160	exon20	c.T1820C	p.L607P	AGATTCTCTCTGT	.	336	113	266	0	.	955	C	26117279	T	C	26117279	3	2	150	1	0	0	0	0	1	0	0	0	344	1551	54	2	1898	2	ADRBK2	22	26117279	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10		26117279	25187287	249	19417											
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10094158	10094158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WWC3	NM_015691	exon15	c.A1918G	p.I640V	AGCCACATCCGAG	.	121	79	112	0	.	134	G	10094158	A	G	10094158	3	3	150	1	0	0	0	0	1	0	0	0	17410	217	8	2	1972	2	WWC3	23	10094158	Missense_Mutation	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10		10094158	145176402	250	19418											
FAM133A	286499	broad.mit.edu;bcgsc.ca	37	X	92964586	92964586	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FAM133A	NM_173698	exon4	c.A168G	p.K56K	TTCAAAAGCATTA	.	55	4	61	0	.	130	G	92964586	A	G	92964586	2	3	150	1	0	0	0	0	0	0	0	1	5443	69	3	2		2	FAM133A	23	92964586	Silent	SNP	A	TCGA-G3-A3CK-01A-11D-A20W-10	82870428	92964586	62305974	251	19419											
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118827051	118827051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SEPT6	NM_145802	exon1	c.A18G	p.I6M	GCGAGCTATATCG	.	122	77	185	0	.	969	C	118827051	T	C	118827051	3	2	150	1	0	0	0	0	1	0	0	0	14068	1512	53	2	1348	2	SEPT6	23	118827051	Missense_Mutation	SNP	T	TCGA-G3-A3CK-01A-11D-A20W-10	25862465	118827051	36443509	252	19420											
TCHH	7062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152081138	152081138	+	Missense_Mutation	SNP	C	C	G	rs189687085	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TCHH	NM_007113	exon3	c.G4555C	p.E1519Q	CCTCCTCGAGGAA	.	120	24	73	1	C|0.999;T|0.000	72	G	152081138	C	G	152081138	3	3	151	1	0	0	0	0	1	0	0	0	15697	893	31	4	1280	4	TCHH	1	152081138	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		152081138	97169483	1	19421											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu	37	2	73680580	73680580	+	Missense_Mutation	SNP	C	C	T	rs147001219	by1000genomes	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ALMS1	NM_015120	exon8	c.C6923T	p.T2308M	CTTCCACGGGTGT	.	86	4	74	0	C|0.999;T|0.000	142	T	73680580	C	T	73680580	3	4	151	1	0	0	0	0	1	0	0	0	535	536	19	1	6953	1	ALMS1	2	73680580	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		73680580	169518793	2	19422											
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180815590	180815590	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CWC22	NM_020943	exon18	c.C1881T	p.A627A	GTTGATGGCAAAC	.	32	18	48	0	.	90	A	180815590	G	A	180815590	2	1	151	1	0	0	0	0	0	0	0	1	4068	1335	47	3		3	CWC22	2	180815590	Silent	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10	107135010	180815590	62383783	3	19423											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49719195	49719195	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	APEH	NM_001640	exon16	c.C1479T	p.S493S	TGGCAGCCCTCCA	.	166	21	187	0	.	91	T	49719195	C	T	49719195	2	4	151	1	0	0	0	0	0	0	0	1	768	738	26	3		3	APEH	3	49719195	Silent	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		49719195	148303235	4	19424											
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56345032	56345032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CLOCK	NM_004898	exon6	c.A206T	p.D69V	GATTTGTCCATCT	.	104	43	102	0	.	515	A	56345032	T	A	56345032	3	1	151	1	0	0	0	0	1	0	0	0	3549	1667	58	4	2406	4	CLOCK	4	56345032	Missense_Mutation	SNP	T	TCGA-G3-A5SI-01A-31D-A27I-10		56345032	134809244	5	19425											
CEP135	9662	hgsc.bcm.edu;broad.mit.edu	37	4	56835289	56835289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CEP135	NM_025009	exon9	c.C1105T	p.Q369X	AAACTTCAGCTGG	.	125	5	117	0	.	94	T	56835289	C	T	56835289	4	4	151	1	0	0	0	0	0	1	0	0	3247	827	29	3	1135	3	CEP135	4	56835289	Nonsense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	490257	56835289	134318987	6	19426											
AASDH	132949	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	57215517	57215517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	AASDH	NM_181806	exon11	c.C2400A	p.Y800X	CCCAGAGTAAAAG	.	123	50	152	0	.	94	T	57215517	G	T	57215517	4	4	151	1	0	0	0	0	0	1	0	0	22	1024	36	3	916	3	AASDH	4	57215517	Nonsense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10	380228	57215517	133938759	7	19427											
UGT2B4	7363	hgsc.bcm.edu;bcgsc.ca	37	4	70361558	70361580	+	Frame_Shift_Del	DEL	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	UGT2B4	NM_021139	wholegene			GAAGAGCTGAAGT	.	58	5	73	0	.	92	-	70361580	CTGAAGTCCATTTCATAGACATC	-	70361558	7	5	151	1	0	1	0	1	0	0	0	0	16958	797	28	0	1588	0	UGT2B4	4	70361558	Frame_Shift_Del	DEL	CTGAAGTCCATTTCATAGACATC	TCGA-G3-A5SI-01A-31D-A27I-10	13146041	70361558	120792718	8	19428											
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87622910	87622910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPN13	NM_006264	exon7	c.G1151T	p.R384I	GAGAGAGACAAAA	.	64	8	119	1	.	230	T	87622910	G	T	87622910	3	4	151	1	0	0	0	0	1	0	0	0	12782	942	33	3	1173	3	PTPN13	4	87622910	Missense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10	17261352	87622910	103531366	9	19429											
TDO2	6999	ucsc.edu;bcgsc.ca	37	4	156826233	156826233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TDO2	NM_005651	exon3	c.G156T	p.L52F	AGTTTTGAATGCA	.	42	4	100	0	.	514	T	156826233	G	T	156826233	3	4	151	1	0	0	0	0	1	0	0	0	15724	1281	45	3	166	3	TDO2	4	156826233	Missense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10	69203323	156826233	34328043	10	19430											
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54624616	54624616	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SKIV2L2	NM_015360	exon5	c.A492C	p.S164S	TACCTCAGCGGGA	.	66	27	76	0	.	92	C	54624616	A	C	54624616	2	2	151	1	0	0	0	0	0	0	0	1	14360	175	7	5		5	SKIV2L2	5	54624616	Silent	SNP	A	TCGA-G3-A5SI-01A-31D-A27I-10		54624616	126290644	11	19431											
ANXA6	309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150483246	150483246	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ANXA6	NM_001155	exon25	c.1847delG	p.G616fs	TCTGTGCCAGCAC	.	53	22	86	0	.	22	-	150483246	C	-	150483246	7	5	151	1	0	1	0	1	0	0	0	0	722	739	26	0	182	0	ANXA6	5	150483246	Frame_Shift_Del	DEL	C	TCGA-G3-A5SI-01A-31D-A27I-10	95858630	150483246	30432014	12	19432											
DEK	7913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18249918	18249918	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DEK	NM_003472	exon7	c.G726A	p.E242E	TGAAGACTCTTCC	.	111	8	58	0	.	658	T	18249918	C	T	18249918	2	4	151	1	0	0	0	0	0	0	0	1	4424	564	20	3		3	DEK	6	18249918	Silent	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		18249918	152865149	13	19433											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42116418	42116418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GLI3	NM_000168	exon4	c.C406A	p.P136T	CAATTGGTACAGG	.	175	33	161	0	.	1149	T	42116418	G	T	42116418	3	4	151	1	0	0	0	0	1	0	0	0	6439	1261	44	3	4384	3	GLI3	7	42116418	Missense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10		42116418	117022245	14	19434											
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100004329	100004329	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZCWPW1	NM_001258008	exon12	c.G1161A	p.E387E	TGATAGCTCCAGG	.	85	8	83	0	.	90	T	100004329	C	T	100004329	2	4	151	1	0	0	0	0	0	0	0	1	17594	796	28	3		3	ZCWPW1	7	100004329	Silent	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	57887911	100004329	59134334	15	19435											
TAS2R3	50831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141464093	141464093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TAS2R3	NM_016943	exon1	c.C135G	p.D45E	GTCTGACTTCATC	.	148	6	172	0	.	90	G	141464093	C	G	141464093	3	3	151	1	0	0	0	0	1	0	0	0	15569	564	20	4	137	4	TAS2R3	7	141464093	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	41459764	141464093	17674570	16	19436											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1998979	1998979	+	Silent	SNP	G	G	A	rs112978000	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	MYOM2	NM_003970	exon2	c.G99A	p.A33A	ATATGCGTCAAAA	.	99	41	134	0	A|0.001;C|0.000;G|0.999	95	A	1998979	G	A	1998979	2	1	151	1	0	0	0	0	0	0	0	1	10092	1132	40	1		1	MYOM2	8	1998979	Silent	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10		1998979	144365043	17	19437											
SLC25A37	51312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23429092	23429092	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SLC25A37	NM_016612	exon4	c.C741T	p.L247L	GGCCCTCGCCGCG	.	33	16	39	0	.	90	T	23429092	C	T	23429092	2	4	151	1	0	0	0	0	0	0	0	1	14501	871	31	1		1	SLC25A37	8	23429092	Silent	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	21430113	23429092	122934930	18	19438											
STC1	6781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23709890	23709890	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	STC1	NM_003155	exon2	c.G126T	p.V42V	ACGAACCACTTCA	.	115	44	127	1	.	94	A	23709890	C	A	23709890	2	1	151	1	0	0	0	0	0	0	0	1	15274	581	21	3		3	STC1	8	23709890	Silent	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	280798	23709890	122654132	19	19439											
LRP12	29967	broad.mit.edu;bcgsc.ca	37	8	105502999	105502999	+	Missense_Mutation	SNP	G	G	A	rs138849088	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	LRP12	NM_013437	exon7	c.C2482T	p.R828C	CACAGCGCTCACA	.	393	26	281	1	G|1.000;A|0.000	90	A	105502999	G	A	105502999	3	1	151	1	0	0	0	0	1	0	0	0	8954	1087	38	1	101	1	LRP12	8	105502999	Missense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10	81793109	105502999	40861023	20	19440											
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133141974	133141974	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KCNQ3	NM_004519	exon15	c.G2154C	p.V718V	CAGGTTCACAGGG	.	304	89	176	0	.	138	G	133141974	C	G	133141974	2	3	151	1	0	0	0	0	0	0	0	1	8084	813	29	4		4	KCNQ3	8	133141974	Silent	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	27638975	133141974	13222048	21	19441											
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95152228	95152228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	OGN	NM_033014	exon5	c.C538G	p.L180V	GTTTTAGTAGTTG	.	29	14	56	0	.	492	C	95152228	G	C	95152228	3	2	151	1	0	0	0	0	1	0	0	0	10846	1020	36	4	370	4	OGN	9	95152228	Missense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10		95152228	46061203	22	19442											
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414248	32414248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	WT1	NM_024424	exon8	c.T1303C	p.S435P	GGTCTGAACGAGA	.	243	101	260	0	.	6891	G	32414248	A	G	32414248	3	3	151	1	0	0	0	0	1	0	0	0	17405	246	9	2	262	2	WT1	11	32414248	Missense_Mutation	SNP	A	TCGA-G3-A5SI-01A-31D-A27I-10		32414248	102592268	23	19443											
CATSPER1	117144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65788038	65788038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CATSPER1	NM_053054	exon7	c.T1988C	p.L663P	CACTTGAGGAAGA	.	120	42	105	0	.	92	G	65788038	A	G	65788038	3	3	151	1	0	0	0	0	1	0	0	0	2687	304	11	2	378	2	CATSPER1	11	65788038	Missense_Mutation	SNP	A	TCGA-G3-A5SI-01A-31D-A27I-10	33373790	65788038	69218478	24	19444											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	54756722	54756722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GPR84	NM_020370	exon2	c.G914A	p.R305K	GCTCTTCTGGCTC	.	135	9	154	0	.	523	T	54756722	C	T	54756722	3	4	151	1	0	0	0	0	1	0	0	0	6714	913	32	3	280	3	GPR84	12	54756722	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		54756722	79095173	25	19445											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48953741	48953742	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	RB1	NM_000321	exon14	c.1344_1345insG	p.L448fs	CAAACTTGGAGTT	.	25	19	91	0	.	3784	G	48953742	-	G	48953741	7	5	151	1	0	1	1	0	0	0	0	0	13098	1799	63	0	1398	0	RB1	13	48953741	Frame_Shift_Ins	INS	-	TCGA-G3-A5SI-01A-31D-A27I-10		48953741	66216137	26	19446											
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24901509	24901509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KHNYN	NM_015299	exon3	c.C1042A	p.H348N	CGGCTCCACAATG	.	150	8	174	0	.	93	A	24901509	C	A	24901509	3	1	151	1	0	0	0	0	1	0	0	0	8150	594	21	3	1048	3	KHNYN	14	24901509	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		24901509	82448031	27	19447											
CKB	1152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103986257	103986257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CKB	NM_001823	exon8	c.G1090A	p.E364K	GCTGCTCCATCTC	.	43	16	47	0	.	115	T	103986257	C	T	103986257	3	4	151	1	0	0	0	0	1	0	0	0	3446	864	30	3	59	3	CKB	14	103986257	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	79084748	103986257	3363283	28	19448											
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65680865	65680865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	IGDCC4	NM_020962	exon16	c.A2767T	p.M923L	CCCCCATCTTGAA	.	82	30	101	0	.	93	A	65680865	T	A	65680865	3	1	151	1	0	0	0	0	1	0	0	0	7569	1435	50	4	1005	4	IGDCC4	15	65680865	Missense_Mutation	SNP	T	TCGA-G3-A5SI-01A-31D-A27I-10		65680865	36850527	29	19449											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	1263800	1263800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CACNA1H	NM_021098	exon27	c.T4798C	p.Y1600H	CCCTACTATGCCG	.	22	5	35	0	.	67	C	1263800	T	C	1263800	3	2	151	1	0	0	0	0	1	0	0	0	2545	1522	53	2	4900	2	CACNA1H	16	1263800	Missense_Mutation	SNP	T	TCGA-G3-A5SI-01A-31D-A27I-10		1263800	89090953	30	19450											
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3335687	3335687	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZNF263	NM_005741	exon3	c.C575G	p.S192C	CATTATCTGCTCC	.	142	27	133	0	.	94	G	3335687	C	G	3335687	3	3	151	1	0	0	0	0	1	0	0	0	17800	913	32	4	585	4	ZNF263	16	3335687	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	2071887	3335687	87019066	31	19451											
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2203672	2203672	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SMG6	NM_017575	exon2	c.T375C	p.A125A	TTGTCCAGCAGTC	.	17	15	30	0	.	228	G	2203672	A	G	2203672	2	3	151	1	0	0	0	0	0	0	0	1	14797	175	7	2		2	SMG6	17	2203672	Silent	SNP	A	TCGA-G3-A5SI-01A-31D-A27I-10		2203672	78991538	32	19452											
DTNA	1837	hgsc.bcm.edu;bcgsc.ca	37	18	32418068	32418068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DTNA	NM_001390	exon11	c.1105delA	p.K369fs	CCTCCCAAGGACA	.	93	25	114	0	.	153	-	32418068	A	-	32418068	7	5	151	1	0	1	0	1	0	0	0	0	4788	131	5	0	1182	0	DTNA	18	32418068	Frame_Shift_Del	DEL	A	TCGA-G3-A5SI-01A-31D-A27I-10		32418068	45659180	33	19453											
C19orf43	79002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12845284	12845284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	C19orf43	NM_024038	exon1	c.G188A	p.G63D	AAGCTGCCGTCGT	.	20	5	27	0	.	90	T	12845284	C	T	12845284	3	4	151	1	0	0	0	0	1	0	0	0	1926	739	26	3	354	3	C19orf43	19	12845284	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		12845284	46283699	34	19454											
USE1	55850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17330476	17330476	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_018467	exon8	c.C634G	p.L212V	CAGAACCTGGAGA	.	162	10	145	0	.	.	G	17330476	C	G	17330476	3	3	151	1	0	0	0	0	1	0	0	0	17028	680	24	4	664	4	USE1	19	17330476	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	4485192	17330476	41798507	35	19455											
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19245614	19245614	+	Missense_Mutation	SNP	C	C	G	rs143085909	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TMEM161A	NM_001256766	exon2	c.G86C	p.R29P	AGCCAGCGCGCGA	.	56	27	56	0	C|1.000;A|0.000	154	G	19245614	C	G	19245614	3	3	151	1	0	0	0	0	1	0	0	0	16073	768	27	4	1397	4	TMEM161A	19	19245614	Missense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10	1915138	19245614	39883369	36	19456											
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30365347	30365347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TPX2	NM_012112	exon9	c.G788T	p.R263L	ACTTCCGCACAGA	.	153	68	169	0	.	290	T	30365347	G	T	30365347	3	4	151	1	0	0	0	0	1	0	0	0	16429	1087	38	1	814	1	TPX2	20	30365347	Missense_Mutation	SNP	G	TCGA-G3-A5SI-01A-31D-A27I-10		30365347	32660173	37	19457											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	40730794	40730795	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPRT	NM_133170	exon27	c.3741_3742insTC	p.S1247fs	ATTGCTGGATTCT	.	138	62	173	0	.	664	GA	40730795	-	GA	40730794	7	5	151	1	0	1	1	0	0	0	0	0	12812	1335	47	0	665	0	PTPRT	20	40730794	Frame_Shift_Ins	INS	-	TCGA-G3-A5SI-01A-31D-A27I-10	10365447	40730794	22294726	38	19458											
PCBP3	54039	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	47330914	47330914	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PCBP3	NM_001130141	exon7	c.C570A	p.C190X	CCAGTGCGTCAAG	.	76	29	93	1	.	227	A	47330914	C	A	47330914	4	1	151	1	0	0	0	0	0	1	0	0	11502	776	27	1	596	1	PCBP3	21	47330914	Nonsense_Mutation	SNP	C	TCGA-G3-A5SI-01A-31D-A27I-10		47330914	798981	39	19459											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu	37	Y	5605945	5605945	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_032973	exon5	c.A3985T	p.R1329X	CCGTCCAGAGGTG	.	242	220	241	1	.	.	T	5605945	A	T	5605945	4	4	151	1	0	0	0	0	0	1	0	0	11509	180	7	4	4061	4	PCDH11Y	24	5605945	Nonsense_Mutation	SNP	A	TCGA-G3-A5SI-01A-31D-A27I-10		5605945	53767621	40	19460											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11317091	11317091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	MTOR,NS,malignant_melanoma,+1	MTOR	NM_004958	exon4	c.A403G	p.M135V	CTGCCATGGCAAG	.	231	157	603	2	.	1439	C	11317091	T	C	11317091	3	2	152	1	0	0	0	0	1	0	0	0	9954	1464	51	2	7466	2	MTOR	1	11317091	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		11317091	237933530	1	19461											
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17948399	17948422	+	In_Frame_Del	DEL	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ARHGEF10L	NM_018125	exon11	c.983_1006del	p.328_336del	AGAGCGAAGGCAG	.	65	11	197	0	.	292	-	17948422	AAGGCAGCTACGTGGAGTCTCTGA	-	17948399	7	5	152	1	0	1	0	1	0	0	0	0	895	246	9	0	1021	0	ARHGEF10L	1	17948399	In_Frame_Del	DEL	AAGGCAGCTACGTGGAGTCTCTGA	TCGA-G3-A5SJ-01A-11D-A27I-10	6631308	17948399	231302222	2	19462											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19483269	19483269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBR4	NM_020765	exon41	c.G5911A	p.G1971R	TTAGCCCACAAAC	.	163	82	352	0	.	612	T	19483269	C	T	19483269	3	4	152	1	0	0	0	0	1	0	0	0	16901	594	21	3	9904	3	UBR4	1	19483269	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	1534870	19483269	229767352	3	19463											
ELTD1	64123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79403627	79403627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELTD1	NM_022159	exon6	c.G625A	p.V209I	CCCAAACTACAAA	.	80	33	153	1	.	24	T	79403627	C	T	79403627	3	4	152	1	0	0	0	0	1	0	0	0	5084	565	20	3	1487	3	ELTD1	1	79403627	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	59920358	79403627	169846994	4	19464											
HS2ST1	9653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	87563541	87563541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.609delA	p.A203fs	TGTAGCAGAAGGT	.	114	17	248	0	.	90	-	87563541	A	-	87563541	7	5	152	1	0	1	0	1	0	0	0	0	7362	175	7	0	627	0	HS2ST1	1	87563541	Frame_Shift_Del	DEL	A	TCGA-G3-A5SJ-01A-11D-A27I-10	8159914	87563541	161687080	5	19465	116	2									
HS2ST1	9653	hgsc.bcm.edu;bcgsc.ca	37	1	87563544	87563544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.A612C	p.E204D	AGCAGAAGGTGGC	.	121	17	258	0	.	90	C	87563544	A	C	87563544	3	2	152	1	0	0	0	0	1	0	0	0	7362	69	3	5	630	5	HS2ST1	1	87563544	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	3	87563544	161687077	6	19466	116	2									
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94577092	94577092	+	Silent	SNP	C	C	T	rs201725352		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ABCA4	NM_000350	exon3	c.G204A	p.P68P	GAGCCACGGCAGC	.	89	44	170	0	C|0.999;T|0.001	162	T	94577092	C	T	94577092	2	4	152	1	0	0	0	0	0	0	0	1	34	523	19	1		1	ABCA4	1	94577092	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	7013548	94577092	154673529	7	19467											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113635842	113635842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRIG2	NM_014813	exon3	c.A320G	p.N107S	ATTACAATGAACT	.	122	26	245	0	.	229	G	113635842	A	G	113635842	3	3	152	1	0	0	0	0	1	0	0	0	8945	101	4	2	330	2	LRIG2	1	113635842	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	19058750	113635842	135614779	8	19468											
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145281400	145281400	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NOTCH2NL	NM_203458	exon4	c.G330T	p.L110L	CTGCCTGTCTCAT	.	1094	78	2309	0	.	211	T	145281400	G	T	145281400	2	4	152	1	0	0	0	0	0	0	0	1	10549	1364	48	3		3	NOTCH2NL	1	145281400	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	31645558	145281400	103969221	9	19469											
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166990985	166990985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAEL	NM_032858	exon12	c.A1198G	p.I400V	GAGAGCATTTCCA	.	153	44	395	0	.	91	G	166990985	A	G	166990985	3	3	152	1	0	0	0	0	1	0	0	0	9154	217	8	2	1244	2	MAEL	1	166990985	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	21709585	166990985	82259636	10	19470											
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181700363	181700363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CACNA1E	NM_001205293	exon19	c.C2293A	p.H765N	AGCAGCCACCTGT	.	123	34	260	2	.	95	A	181700363	C	A	181700363	3	1	152	1	0	0	0	0	1	0	0	0	2542	594	21	3	2367	3	CACNA1E	1	181700363	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	14709378	181700363	67550258	11	19471											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207872610	207872619	+	Frame_Shift_Del	DEL	GTGTGTGAAC	GTGTGTGAAC	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GTGTGTGAAC	GTGTGTGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CR1L	NM_175710	exon8	c.1219_1228del	p.407_410del	GTTCCAGTGTGTG	.	112	12	402	0	.	46	-	207872619	GTGTGTGAAC	-	207872610	7	5	152	1	0	1	0	1	0	0	0	0	3841	1029	36	0	1249	0	CR1L	1	207872610	Frame_Shift_Del	DEL	GTGTGTGAAC	TCGA-G3-A5SJ-01A-11D-A27I-10	26172247	207872610	41378011	12	19472											
OBSCN	84033	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228538636	228538636	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OBSCN	NM_001271223	exon88	c.G21282A	p.P7094P	GTACCCGCAGATC	.	142	50	224	2	.	403	A	228538636	G	A	228538636	2	1	152	1	0	0	0	0	0	0	0	1	10812	1074	38	1		1	OBSCN	1	228538636	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	20666026	228538636	20711985	13	19473											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235964399	235964399	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LYST	NM_000081	exon10	c.3713-2A>T	.	TACCCCTGAAAAG	.	19	7	48	0	.	143	A	235964399	T	A	235964399	5	1	152	1	0	0	0	0	0	0	1	0	9128	1594	55	4	7874	4	LYST	1	235964399	Splice_Site	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	7425763	235964399	13286222	14	19474											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240072344	240072344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CHRM3	NM_000740	exon5	c.G1593C	p.W531C	CTACTGGCTGTGC	.	96	32	367	0	.	95	C	240072344	G	C	240072344	3	2	152	1	0	0	0	0	1	0	0	0	3378	1212	42	4	1595	4	CHRM3	1	240072344	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	4107945	240072344	9178277	15	19475											
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248367191	248367191	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OR2M3	NM_001004689	exon1	c.G822T	p.V274V	GATGGTGTCTGTA	.	145	32	298	2	.	70	T	248367191	G	T	248367191	2	4	152	1	0	0	0	0	0	0	0	1	11011	1364	48	3		3	OR2M3	1	248367191	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	8294847	248367191	883430	16	19476											
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29366660	29366660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CLIP4	NM_024692	exon7	c.A734G	p.K245R	CTGCTAAGGAAAT	.	146	41	371	0	.	91	G	29366660	A	G	29366660	3	3	152	1	0	0	0	0	1	0	0	0	3535	72	3	2	756	2	CLIP4	2	29366660	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10		29366660	213832713	17	19477											
XDH	7498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	31609400	31609400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.A673G	p.K225E	GCTGCTTCCGAGG	.	60	19	172	0	.	158	C	31609400	T	C	31609400	3	2	152	1	0	0	0	0	1	0	0	0	17423	1792	62	2	3440	2	XDH	2	31609400	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	2242740	31609400	211589973	18	19478	117	2									
XDH	7498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	31609402	31609402	+	Missense_Mutation	SNP	C	C	G	rs112466737	byfrequency;alternate_allele	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.G671C	p.R224P	TGCTTCCGAGGAG	.	59	20	170	0	C|0.999;T|0.001	158	G	31609402	C	G	31609402	3	3	152	1	0	0	0	0	1	0	0	0	17423	652	23	4	3442	4	XDH	2	31609402	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	2	31609402	211589971	19	19479	117	2									
EMX1	2016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73160942	73160942	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EMX1	NM_004097	exon3	c.G732A	p.R244R	CCGGAGGACAAAG	.	56	17	161	0	.	90	A	73160942	G	A	73160942	2	1	152	1	0	0	0	0	0	0	0	1	5107	1165	41	3		3	EMX1	2	73160942	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	41551540	73160942	170038431	20	19480											
NAT8	9027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73868277	73868277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAT8	NM_003960	exon2	c.C479A	p.T160N	AGGACAGTCCTGA	.	107	44	296	1	.	91	T	73868277	G	T	73868277	3	4	152	1	0	0	0	0	1	0	0	0	10179	1029	36	3	208	3	NAT8	2	73868277	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	707335	73868277	169331096	21	19481											
CCDC138	165055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	109405347	109405347	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCDC138	NM_144978	exon3	c.C191A	p.S64X	GTTCATCGTTAAA	.	54	14	140	0	.	90	A	109405347	C	A	109405347	4	1	152	1	0	0	0	0	0	1	0	0	2772	893	31	1	201	1	CCDC138	2	109405347	Nonsense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	35537070	109405347	133794026	22	19482											
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116497381	116497381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DPP10	NM_001178034	exon9	c.T776C	p.M259T	TCCTGATGATAAA	.	197	52	414	0	.	142	C	116497381	T	C	116497381	3	2	152	1	0	0	0	0	1	0	0	0	4727	1464	51	2	969	2	DPP10	2	116497381	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	7092034	116497381	126701992	23	19483											
LRP1B	53353	broad.mit.edu;ucsc.edu	37	2	141122263	141122263	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRP1B	NM_018557	exon72	c.G11098T	p.G3700X	TGTCTCCACAGTC	.	163	48	208	2	.	311	A	141122263	C	A	141122263	4	1	152	1	0	0	0	0	0	1	0	0	8955	603	21	3	2781	3	LRP1B	2	141122263	Nonsense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	24624882	141122263	102077110	24	19484											
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209190271	209190271	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PIKFYVE	NM_015040	exon20	c.C2736T	p.P912P	CATCCCCTGGGAT	.	67	17	163	0	.	583	T	209190271	C	T	209190271	2	4	152	1	0	0	0	0	0	0	0	1	11924	668	24	3		3	PIKFYVE	2	209190271	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	68068008	209190271	34009102	25	19485											
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234438104	234438104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP40	NM_018218	exon11	c.C1559A	p.A520E	TTAGCTGCATCCA	.	24	8	61	0	.	455	T	234438104	G	T	234438104	3	4	152	1	0	0	0	0	1	0	0	0	17069	1319	46	3	2268	3	USP40	2	234438104	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	25247833	234438104	8761269	26	19486											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268760	41268760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CTNNB1	NM_001098209	exon7	c.A998T	p.Y333F	ATACTTACGAAAA	.	39	14	107	0	.	24361	T	41268760	A	T	41268760	3	4	152	1	0	0	0	0	1	0	0	0	4016	391	14	4	1020	4	CTNNB1	3	41268760	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10		41268760	156753670	27	19487											
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	102175049	102175049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZPLD1	NM_175056	exon4	c.C388T	p.P130S	ACAATTCCTGGAG	.	54	23	140	0	.	72	T	102175049	C	T	102175049	3	4	152	1	0	0	0	0	1	0	0	0	18218	855	30	3	402	3	ZPLD1	3	102175049	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	60906289	102175049	95847381	28	19488											
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134920510	134920510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EPHB1	NM_004441	exon12	c.T2325G	p.D775E	CTCAGATCCCACC	.	175	60	393	1	.	1492	G	134920510	T	G	134920510	3	3	152	1	0	0	0	0	1	0	0	0	5174	1432	50	5	2371	5	EPHB1	3	134920510	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	32745461	134920510	63101920	29	19489											
PAQR9	344838	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	142682019	142682019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PAQR9	NM_198504	exon1	c.T160G	p.F54V	CCACGAAGTCGTC	.	67	19	105	0	.	68	C	142682019	A	C	142682019	3	2	152	1	0	0	0	0	1	0	0	0	11442	72	3	5	977	5	PAQR9	3	142682019	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	7761509	142682019	55340411	30	19490											
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183995039	183995039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ECE2	NM_014693	exon4	c.A617G	p.D206G	CCACAGACCCATC	.	70	20	269	0	.	94	G	183995039	A	G	183995039	3	3	152	1	0	0	0	0	1	0	0	0	4890	289	10	2	1195	2	ECE2	3	183995039	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	41313020	183995039	14027391	31	19491											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726026	30726026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PCDH7	NM_032457	exon1	c.G2982T	p.R994S	GGCAAGGCATTAC	.	100	36	222	0	.	229	T	30726026	G	T	30726026	3	4	152	1	0	0	0	0	1	0	0	0	11516	1194	42	3	2984	3	PCDH7	4	30726026	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10		30726026	160428250	32	19492											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39902096	39902096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001100399	exon14	c.A1531G	p.M511V	GAAGCATGTTCTG	.	34	16	93	0	.	.	C	39902096	T	C	39902096	3	2	152	1	0	0	0	0	1	0	0	0	11691	1464	51	2	2595	2	PDS5A	4	39902096	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	9176070	39902096	151252180	33	19493											
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74008379	74008379	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.2063delC	p.A688fs	GGATCTGCCCCAT	.	53	19	81	0	.	234	-	74008379	G	-	74008379	7	5	152	1	0	1	0	1	0	0	0	0	646	1319	46	0	5840	0	ANKRD17	4	74008379	Frame_Shift_Del	DEL	G	TCGA-G3-A5SJ-01A-11D-A27I-10	34106283	74008379	117145897	34	19494	118	2									
ANKRD17	26057	hgsc.bcm.edu;bcgsc.ca	37	4	74008384	74008384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.T2058G	p.H686Q	TGCCCCATGAGCC	.	57	20	93	0	.	234	C	74008384	A	C	74008384	3	2	152	1	0	0	0	0	1	0	0	0	646	214	8	5	5845	5	ANKRD17	4	74008384	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	5	74008384	117145892	35	19495	118	2									
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74283835	74283835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ALB	NM_000477	exon12	c.T1459G	p.L487V	TGTGTGTTGCATG	.	53	16	141	1	.	96	G	74283835	T	G	74283835	3	3	152	1	0	0	0	0	1	0	0	0	486	1722	60	5	1505	5	ALB	4	74283835	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	275451	74283835	116870441	36	19496											
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	87655497	87655497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPN13	NM_006264	exon13	c.A1900G	p.K634E	TTAACCAAAGTGG	.	38	10	105	0	.	230	G	87655497	A	G	87655497	3	3	152	1	0	0	0	0	1	0	0	0	12782	131	5	2	1946	2	PTPN13	4	87655497	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	13371662	87655497	103498779	37	19497											
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90171127	90171127	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN3	NM_198281	exon2	c.T135C	p.N45N	AAAGCCATTGGCA	.	62	23	141	0	.	71	G	90171127	A	G	90171127	2	3	152	1	0	0	0	0	0	0	0	1	6731	214	8	2		2	GPRIN3	4	90171127	Silent	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	2515630	90171127	100983149	38	19498											
CPE	1363	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166388853	166388853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CPE	NM_001873	exon3	c.A518G	p.K173R	AACTCAAGGACTG	.	40	11	83	1	.	155	G	166388853	A	G	166388853	3	3	152	1	0	0	0	0	1	0	0	0	3799	72	3	2	528	2	CPE	4	166388853	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	76217726	166388853	24765423	39	19499											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75888748	75888748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	IQGAP2	NM_006633	exon9	c.A905G	p.N302S	AAGTCAACAGTAA	.	165	49	336	0	.	96	G	75888748	A	G	75888748	3	3	152	1	0	0	0	0	1	0	0	0	7815	43	2	2	939	2	IQGAP2	5	75888748	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10		75888748	105026512	40	19500											
GPRIN1	114787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176024063	176024063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN1	NM_052899	exon2	c.T2773C	p.Y925H	CGCCGTATACCTC	.	18	8	21	0	.	92	G	176024063	A	G	176024063	3	3	152	1	0	0	0	0	1	0	0	0	6729	449	16	2	257	2	GPRIN1	5	176024063	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	100135315	176024063	4891197	41	19501											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562395	176562395	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NSD1	NM_022455	exon2	c.T291G	p.F97L	ATCCTTTCAAGAC	.	51	16	142	0	.	188	G	176562395	T	G	176562395	3	3	152	1	0	0	0	0	1	0	0	0	10669	1780	62	5	293	5	NSD1	5	176562395	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	538332	176562395	4352865	42	19502											
HIST1H3D	8351	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26197153	26197153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HIST1H3D	NM_003530	exon2	c.A326G	p.N109S	CATAGGTTGGTGT	.	137	40	386	2	.	90	C	26197153	T	C	26197153	3	2	152	1	0	0	0	0	1	0	0	0	7158	1725	60	2	88	2	HIST1H3D	6	26197153	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		26197153	144917914	43	19503											
DDAH2	23564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31695402	31695402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DDAH2	NM_013974	exon6	c.G659C	p.C220S	AAGAGACAGTCAG	.	88	21	253	0	.	90	G	31695402	C	G	31695402	3	3	152	1	0	0	0	0	1	0	0	0	4322	478	17	4	206	4	DDAH2	6	31695402	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	5498249	31695402	139419665	44	19504											
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	57011983	57011983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF451	NM_001031623	exon10	c.G1100T	p.C367F	CAGATTGCAATCA	.	84	19	172	0	.	93	T	57011983	G	T	57011983	3	4	152	1	0	0	0	0	1	0	0	0	17919	1319	46	3	1138	3	ZNF451	6	57011983	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	25316581	57011983	114103084	45	19505											
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83881724	83881724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PGM3	NM_001199917	exon12	c.A1381C	p.K461Q	AGCCCTTCAGAGC	.	37	9	137	0	.	90	G	83881724	T	G	83881724	3	3	152	1	0	0	0	0	1	0	0	0	11800	1792	62	5	343	5	PGM3	6	83881724	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	26869741	83881724	87233343	46	19506											
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106554333	106554333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PRDM1	NM_001198	exon6	c.C1861T	p.H621Y	CAGAAACACTACC	.	85	36	220	0	.	862	T	106554333	C	T	106554333	3	4	152	1	0	0	0	0	1	0	0	0	12450	478	17	3	1896	3	PRDM1	6	106554333	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	22672609	106554333	64560734	47	19507											
BCLAF1	9774	hgsc.bcm.edu;bcgsc.ca	37	6	136599396	136599396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BCLAF1	NM_014739	exon4	c.C623A	p.T208K	CCGGATGTGGCTG	.	72	10	165	0	.	228	T	136599396	G	T	136599396	3	4	152	1	0	0	0	0	1	0	0	0	1383	1377	48	3	2179	3	BCLAF1	6	136599396	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	30045063	136599396	34515671	48	19508											
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160189612	160189612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ACAT2	NM_005891	exon4	c.T442A	p.C148S	ATACTCTGTGATG	.	69	22	206	0	.	91	A	160189612	T	A	160189612	3	1	152	1	0	0	0	0	1	0	0	0	122	1580	55	4	456	4	ACAT2	6	160189612	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	23590216	160189612	10925455	49	19509											
USP42	84132	ucsc.edu;bcgsc.ca	37	7	6183809	6183809	+	Silent	SNP	C	C	T	rs151011297		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP42	NM_032172	exon9	c.C972T	p.T324T	TTTTACCGGTGGA	.	22	4	75	0	C|0.999;T|0.001	659	T	6183809	C	T	6183809	2	4	152	1	0	0	0	0	0	0	0	1	17070	639	23	1		1	USP42	7	6183809	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		6183809	152954854	50	19510											
GARS	2617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30673470	30673470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GARS	NM_002047	exon17	c.G2214T	p.E738D	AATCGAGGAATGA	.	35	17	91	0	.	91	T	30673470	G	T	30673470	3	4	152	1	0	0	0	0	1	0	0	0	6242	991	35	3	2280	3	GARS	7	30673470	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	24489661	30673470	128465193	51	19511											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31682701	31682701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001257968	exon11	c.G1795A	p.V599I	ACCCACGTCACAG	.	82	30	184	0	.	.	A	31682701	G	A	31682701	3	1	152	1	0	0	0	0	1	0	0	0	2764	1145	40	1	1755	1	CCDC129	7	31682701	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	1009231	31682701	127455962	52	19512											
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36895340	36895340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELMO1	NM_014800	exon22	c.A2000G	p.D667G	AGTCCATCCGTCC	.	135	38	312	0	.	96	C	36895340	T	C	36895340	3	2	152	1	0	0	0	0	1	0	0	0	5065	1435	50	2	187	2	ELMO1	7	36895340	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	5212639	36895340	122243323	53	19513											
URGCP	55665	ucsc.edu;bcgsc.ca	37	7	43917614	43917614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	URGCP	NM_001077663	exon6	c.T1448G	p.I483S	TCTTTGATTTTCC	.	109	49	281	2	.	94	C	43917614	A	C	43917614	3	2	152	1	0	0	0	0	1	0	0	0	17023	333	12	5	1351	5	URGCP	7	43917614	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	7022274	43917614	115221049	54	19514											
SUMF2	25870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56140741	56140741	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUMF2	NM_015411	exon3	c.G333C	p.W111C	TGGATGGAGCTTT	.	84	20	178	0	.	92	C	56140741	G	C	56140741	3	2	152	1	0	0	0	0	1	0	0	0	15383	1183	41	4	343	4	SUMF2	7	56140741	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	12223127	56140741	102997922	55	19515											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91694746	91694746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	AKAP9_ENST00000356239,NS,other,0	AKAP9	NM_005751	exon25	c.A6179G	p.K2060R	TGGAAAAGCAGTT	.	50	23	100	1	.	755	G	91694746	A	G	91694746	3	3	152	1	0	0	0	0	1	0	0	0	459	72	3	2	6277	2	AKAP9	7	91694746	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	35554005	91694746	67443917	56	19516											
GCC1	79571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127222282	127222282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GCC1	NM_024523	exon2	c.A2114G	p.H705R	TCGATGTGGCTCT	.	225	62	620	1	.	92	C	127222282	T	C	127222282	3	2	152	1	0	0	0	0	1	0	0	0	6285	1696	59	2	217	2	GCC1	7	127222282	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	35527536	127222282	31916381	57	19517											
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131910919	131910919	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PLXNA4	NM_020911	exon9	c.1982+1G>A	.	CACTTACGAATTG	.	78	34	203	1	.	91	T	131910919	C	T	131910919	5	4	152	1	0	0	0	0	0	0	1	0	12122	550	19	1	3801	1	PLXNA4	7	131910919	Splice_Site	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	4688637	131910919	27227744	58	19518											
SLC13A4	26266	hgsc.bcm.edu;mdanderson.org	37	7	135412217	135412217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC13A4	NM_012450	exon1	c.G28A	p.V10I	TCCGGACTCGGAG	.	26	11	8	0	.	90	T	135412217	C	T	135412217	3	4	152	1	0	0	0	0	1	0	0	0	14394	565	20	3	1916	3	SLC13A4	7	135412217	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	3501298	135412217	23726446	59	19519											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141763307	141763307	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MGAM	NM_004668	exon36	c.T4266C	p.N1422N	TATGAATGAACCA	.	70	21	157	0	.	70	C	141763307	T	C	141763307	2	2	152	1	0	0	0	0	0	0	0	1	9541	1461	51	2		2	MGAM	7	141763307	Silent	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	6351090	141763307	17375356	60	19520											
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	124408568	124408568	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATAD2	NM_014109	exon1	c.G30A	p.L10L	GTTGTGCAGCTCC	.	88	5	72	0	.	92	T	124408568	C	T	124408568	2	4	152	1	0	0	0	0	0	0	0	1	1071	697	25	3		3	ATAD2	8	124408568	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		124408568	21955454	61	19521											
NDRG1	10397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134270653	134270653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDRG1	NM_006096	exon7	c.G406A	p.G136S	CCATGCCAATAAT	.	212	65	270	0	.	230	T	134270653	C	T	134270653	3	4	152	1	0	0	0	0	1	0	0	0	10251	594	21	3	818	3	NDRG1	8	134270653	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	9862085	134270653	12093369	62	19522											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141874456	141874456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTK2	NM_005607	exon5	c.C471G	p.N157K	AAACTGGTTTAGA	.	90	32	169	0	.	1517	C	141874456	G	C	141874456	3	2	152	1	0	0	0	0	1	0	0	0	12762	1252	44	4	2865	4	PTK2	8	141874456	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	7603803	141874456	4489566	63	19523											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8504350	8504350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPRD	NM_130392	exon12	c.A1733G	p.N578S	AAGCTGTTTGGTT	.	135	41	348	0	.	912	C	8504350	T	C	8504350	3	2	152	1	0	0	0	0	1	0	0	0	12799	1725	60	2	4169	2	PTPRD	9	8504350	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		8504350	132709081	64	19524											
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19516230	19516230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC24A2	NM_020344	exon10	c.T1907A	p.M636K	CCAAACATGATGA	.	131	34	267	0	.	517	T	19516230	A	T	19516230	3	4	152	1	0	0	0	0	1	0	0	0	14466	217	8	4	82	4	SLC24A2	9	19516230	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	11011880	19516230	121697201	65	19525											
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	124535286	124535286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DAB2IP	NM_032552	exon12	c.T2395G	p.S799A	CCGCTCTCCTTCC	.	32	11	41	0	.	91	G	124535286	T	G	124535286	3	3	152	1	0	0	0	0	1	0	0	0	4219	1551	54	5	2441	5	DAB2IP	9	124535286	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	105019056	124535286	16678145	66	19526											
ODF2	4957	ucsc.edu;bcgsc.ca	37	9	131246268	131246268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ODF2	NM_153435	exon11	c.G1231A	p.G411R	ATGCGTGGGCATT	.	26	4	106	0	.	69	A	131246268	G	A	131246268	3	1	152	1	0	0	0	0	1	0	0	0	10827	1348	47	3	1132	3	ODF2	9	131246268	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	6710982	131246268	9967163	67	19527											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15559199	15559199	+	Silent	SNP	G	G	T	rs199977895		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ITGA8	NM_003638	exon30	c.C3150A	p.T1050T	CCTGTCGGTCATG	.	42	18	65	0	G|0.999;T|0.001	230	T	15559199	G	T	15559199	2	4	152	1	0	0	0	0	0	0	0	1	7882	1103	39	1		1	ITGA8	10	15559199	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10		15559199	119975548	68	19528											
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48370889	48370889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF488	NM_153034	exon2	c.G357T	p.E119D	CCAGGAGAGGGAG	.	75	34	232	0	.	91	T	48370889	G	T	48370889	3	4	152	1	0	0	0	0	1	0	0	0	17937	933	33	3	359	3	ZNF488	10	48370889	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	32811690	48370889	87163858	69	19529											
SUPV3L1	6832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70955011	70955011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUPV3L1	NM_003171	exon7	c.A921T	p.R307S	GACCAGAGCACTT	.	39	20	150	0	.	227	T	70955011	A	T	70955011	3	4	152	1	0	0	0	0	1	0	0	0	15399	301	11	4	947	4	SUPV3L1	10	70955011	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	22584122	70955011	64579736	70	19530											
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	79577541	79577541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DLG5	NM_004747	exon18	c.C3778G	p.R1260G	CCAGGCGGGCGCT	.	52	29	161	0	.	98	C	79577541	G	C	79577541	3	2	152	1	0	0	0	0	1	0	0	0	4558	1116	39	4	2041	4	DLG5	10	79577541	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	8622530	79577541	55957206	71	19531											
BLNK	29760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97956734	97956734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BLNK	NM_013314	exon16	c.A1181G	p.Y394C	ATATTATATACTC	.	14	7	68	0	.	92	C	97956734	T	C	97956734	3	2	152	1	0	0	0	0	1	0	0	0	1447	1406	49	2	197	2	BLNK	10	97956734	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	18379193	97956734	37578013	72	19532											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	587380	587380	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHRF1	NM_020901	exon4	c.C336A	p.L112L	CTGTCTCAACGCA	.	49	24	222	0	.	22	A	587380	C	A	587380	2	1	152	1	0	0	0	0	0	0	0	1	11861	813	29	3		3	PHRF1	11	587380	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		587380	134419136	73	19533											
MLL	4297	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118342446	118342446	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MLL	NM_001197104	exon3	c.C572G	p.S191X	TCCTCTCAGATCC	.	37	15	143	1	.	1255	G	118342446	C	G	118342446	4	3	152	1	0	0	0	0	0	1	0	0	9620	838	29	4	582	4	MLL	11	118342446	Nonsense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	117755066	118342446	16664070	74	19534											
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5153808	5153808	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KCNA5	NM_002234	exon1	c.C495T	p.F165F	CTTCTTCGACCGC	.	60	30	109	0	.	715	T	5153808	C	T	5153808	2	4	152	1	0	0	0	0	0	0	0	1	8006	883	31	1		1	KCNA5	12	5153808	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		5153808	128698087	75	19535											
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6483876	6483876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SCNN1A	NM_001159576	exon1	c.A251G	p.K84R	TCACGCTTGTTCC	.	35	16	67	0	.	90	C	6483876	T	C	6483876	3	2	152	1	0	0	0	0	1	0	0	0	13927	1609	56	2	1983	2	SCNN1A	12	6483876	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	1330068	6483876	127368019	76	19536											
CD163	9332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7640068	7640068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CD163	NM_203416	exon8	c.G1937T	p.W646L	TGCCTCCAGATCT	.	149	58	334	1	.	98	A	7640068	C	A	7640068	3	1	152	1	0	0	0	0	1	0	0	0	2967	595	21	3	1569	3	CD163	12	7640068	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	1156192	7640068	126211827	77	19537											
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41905450	41905450	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAA16	NM_001110798	exon8	c.T852C	p.S284S	AATTAGTAAGCAG	.	64	20	115	0	.	90	C	41905450	T	C	41905450	2	2	152	1	0	0	0	0	0	0	0	1	10119	1635	57	2		2	NAA16	13	41905450	Silent	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		41905450	73264428	78	19538											
KLHL1	57626	broad.mit.edu;ucsc.edu	37	13	70549804	70549804	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHL1	NM_020866	exon2	c.C628T	p.Q210X	AAAGTTGCTGCTG	.	55	5	122	0	.	90	A	70549804	G	A	70549804	4	1	152	1	0	0	0	0	0	1	0	0	8365	1328	46	3	1658	3	KLHL1	13	70549804	Nonsense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	28644354	70549804	44620074	79	19539											
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	88330185	88330185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLITRK5	NM_015567	exon2	c.G2542A	p.V848M	TCGCCGGTGCAGG	.	46	18	84	0	.	94	A	88330185	G	A	88330185	3	1	152	1	0	0	0	0	1	0	0	0	14746	1261	44	3	2544	3	SLITRK5	13	88330185	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	17780381	88330185	26839693	80	19540											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23902342	23902342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYH7	NM_000257	exon4	c.C296T	p.P99L	ACCGCGGGCTCAT	.	182	66	413	0	.	94	A	23902342	G	A	23902342	3	1	152	1	0	0	0	0	1	0	0	0	10039	1232	43	3	5659	3	MYH7	14	23902342	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10		23902342	83447198	81	19541											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70634240	70634240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC8A3	NM_183002	exon2	c.C900T	p.N300N	CACCAGGTTCCCA	.	23	7	95	0	.	225	A	70634240	G	A	70634240	2	1	152	1	0	0	0	0	0	0	0	1	14708	1252	44	3		3	SLC8A3	14	70634240	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	46731898	70634240	36715300	82	19542											
POMT2	29954	broad.mit.edu;ucsc.edu	37	14	77744797	77744797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	POMT2	NM_013382	exon20	c.C2087G	p.P696R	GCCAGGGGCCATG	.	24	7	71	2	.	91	C	77744797	G	C	77744797	3	2	152	1	0	0	0	0	1	0	0	0	12246	1232	43	4	173	4	POMT2	14	77744797	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	7110557	77744797	29604743	83	19543											
TC2N	123036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92265340	92265340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TC2N	NM_001128596	exon6	c.A630C	p.R210S	CAGGCTTCTGTTA	.	13	7	24	0	.	69	G	92265340	T	G	92265340	3	3	152	1	0	0	0	0	1	0	0	0	15662	1780	62	5	870	5	TC2N	14	92265340	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	14520543	92265340	15084200	84	19544											
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22848249	22848249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TUBGCP5	NM_052903	exon9	c.G839T	p.G280V	TTTCAGGAGTGAA	.	40	11	129	0	.	91	T	22848249	G	T	22848249	3	4	152	1	0	0	0	0	1	0	0	0	16766	1174	41	3	873	3	TUBGCP5	15	22848249	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10		22848249	79683143	85	19545											
NDN	4692	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931945	23931945	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDN	NM_002487	exon1	c.C420A	p.L140L	GCGCCGGAGGATG	.	27	9	43	1	.	90	T	23931945	G	T	23931945	2	4	152	1	0	0	0	0	0	0	0	1	10247	1161	41	3		3	NDN	15	23931945	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	1083696	23931945	78599447	86	19546											
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42476724	42476724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VPS39	NM_015289	exon8	c.709delG	p.V237fs	TGGCCACTGGTAT	.	114	41	265	0	.	229	-	42476724	C	-	42476724	7	5	152	1	0	1	0	1	0	0	0	0	17206	565	20	0	1990	0	VPS39	15	42476724	Frame_Shift_Del	DEL	C	TCGA-G3-A5SJ-01A-11D-A27I-10	18544779	42476724	60054668	87	19547											
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48458174	48458174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYEF2	NM_016132	exon5	c.A481C	p.M161L	TGTTCATAGTTTC	.	51	17	87	0	.	523	G	48458174	T	G	48458174	3	3	152	1	0	0	0	0	1	0	0	0	10024	1406	49	5	1373	5	MYEF2	15	48458174	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	5981450	48458174	54073218	88	19548											
DNAH3	55567	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21049196	21049196	+	Missense_Mutation	SNP	C	C	A	rs141984585		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH3	NM_017539	exon34	c.G4837T	p.A1613S	TTCCTGCGGCAGT	.	179	65	443	0	C|0.998;A|0.002	167	A	21049196	C	A	21049196	3	1	152	1	0	0	0	0	1	0	0	0	4603	768	27	1	7628	1	DNAH3	16	21049196	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		21049196	69305557	89	19549											
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	87741993	87741994	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHDC4	NM_017566	exon11	c.1526_1527del	p.509_509del	GTCTTCGTCGTCG	.	44	10	98	0	.	182	-	87741994	GT	-	87741993	7	5	152	1	0	1	0	1	0	0	0	0	8358	1136	40	0	39	0	KLHDC4	16	87741993	Frame_Shift_Del	DEL	GT	TCGA-G3-A5SJ-01A-11D-A27I-10	66692797	87741993	2612760	90	19550											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578513	7578513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	TP53,arm,other,-2	TP53	NM_000546	exon5	c.G417T	p.K139N	GCAGGTCTTGGCC	.	48	24	111	0	.	70225	A	7578513	C	A	7578513	3	1	152	1	0	0	0	0	1	0	0	0	16378	912	32	3	881	3	TP53	17	7578513	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		7578513	73616697	91	19551											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11573031	11573031	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH9	NM_001372	exon17	c.C3273G	p.P1091P	TCGACCCTTTAAG	.	32	20	139	0	.	168	G	11573031	C	G	11573031	2	3	152	1	0	0	0	0	0	0	0	1	4608	668	24	4		4	DNAH9	17	11573031	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	3994518	11573031	69622179	92	19552											
RPL23A	6147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	27049757	27049757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPL23A	NM_000984	exon3	c.A226G	p.I76V	TATGCTATCATCA	.	199	84	351	0	.	91	G	27049757	A	G	27049757	3	3	152	1	0	0	0	0	1	0	0	0	13571	449	16	2	236	2	RPL23A	17	27049757	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	15476726	27049757	54145453	93	19553											
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33486394	33486394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UNC45B	NM_001267052	exon8	c.A809G	p.D270G	CTTCAGACACCAA	.	95	22	143	0	.	157	G	33486394	A	G	33486394	3	3	152	1	0	0	0	0	1	0	0	0	16986	289	10	2	835	2	UNC45B	17	33486394	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	6436637	33486394	47708816	94	19554											
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39084785	39084785	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KRT23	NM_015515	exon5	c.G711C	p.L237L	CTTAATCAGATCT	.	74	18	168	0	.	91	G	39084785	C	G	39084785	2	3	152	1	0	0	0	0	0	0	0	1	8460	813	29	4		4	KRT23	17	39084785	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	5598391	39084785	42110425	95	19555											
KRT39	390792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39118509	39118509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_213656	exon5	c.A901G	p.S301G	GAGAGCTGGTCAC	.	76	32	132	0	.	.	C	39118509	T	C	39118509	3	2	152	1	0	0	0	0	1	0	0	0	8476	1580	55	2	586	2	KRT39	17	39118509	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	33724	39118509	42076701	96	19556	119	2									
KRT39	390792	ucsc.edu;bcgsc.ca	37	17	39118510	39118510	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_213656	exon5	c.C900A	p.T300T	AGAGCTGGTCACC	.	76	33	129	2	.	.	T	39118510	G	T	39118510	2	4	152	1	0	0	0	0	0	0	0	1	8476	1335	47	3		3	KRT39	17	39118510	Silent	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	1	39118510	42076700	97	19557	119	2									
HOXB5	3215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46669637	46669637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HOXB5	NM_002147	exon2	c.G744C	p.K248N	CTTCCACTTCATG	.	104	48	164	0	.	90	G	46669637	C	G	46669637	3	3	152	1	0	0	0	0	1	0	0	0	7304	564	20	4	69	4	HOXB5	17	46669637	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	7551127	46669637	34525573	98	19558											
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58571884	58571884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	APPBP2	NM_006380	exon3	c.A322G	p.I108V	CTGCTATATAAGA	.	77	44	100	0	.	226	C	58571884	T	C	58571884	3	2	152	1	0	0	0	0	1	0	0	0	816	1406	49	2	1479	2	APPBP2	17	58571884	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	11902247	58571884	22623326	99	19559											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62230425	62230425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TEX2	NM_018469	exon10	c.A3041T	p.E1014V	ATAAACTCTGTCT	.	66	28	115	0	.	91	A	62230425	T	A	62230425	3	1	152	1	0	0	0	0	1	0	0	0	15778	1551	54	4	375	4	TEX2	17	62230425	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	3658541	62230425	18964785	100	19560											
SOX9	6662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	70119055	70119055	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SOX9	NM_000346	exon2	c.C627T	p.A209A	GCAGGCCGACTCG	.	87	49	116	0	.	514	T	70119055	C	T	70119055	2	4	152	1	0	0	0	0	0	0	0	1	14958	639	23	1		1	SOX9	17	70119055	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	7888630	70119055	11076155	101	19561											
C1QTNF1	114897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77042704	77042704	+	Missense_Mutation	SNP	C	C	T	rs148895244		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	C1QTNF1	NM_030968	exon3	c.C223T	p.R75C	TGCTTGCGCTGCT	.	126	29	246	1	C|1.000;T|0.000	91	T	77042704	C	T	77042704	3	4	152	1	0	0	0	0	1	0	0	0	1962	768	27	1	229	1	C1QTNF1	17	77042704	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	6923649	77042704	4152506	102	19562											
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78857615	78857615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPTOR	NM_020761	exon16	c.G1685A	p.C562Y	CCATCTGCCTGGA	.	60	17	96	0	.	847	A	78857615	G	A	78857615	3	1	152	1	0	0	0	0	1	0	0	0	13665	1319	46	3	1747	3	RPTOR	17	78857615	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	1814911	78857615	2337595	103	19563											
ATP5A1	498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43667458	43667458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATP5A1	NM_004046	exon7	c.A800T	p.D267V	ATGGCATCTGAGA	.	90	21	256	0	.	90	A	43667458	T	A	43667458	3	1	152	1	0	0	0	0	1	0	0	0	1147	1449	50	4	885	4	ATP5A1	18	43667458	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		43667458	34409790	104	19564											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50450198	50450198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DCC	NM_005215	exon4	c.G819T	p.W273C	TACCTGGTTACGA	.	137	36	264	0	.	225	T	50450198	G	T	50450198	3	4	152	1	0	0	0	0	1	0	0	0	4282	1270	44	3	833	3	DCC	18	50450198	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	6782740	50450198	27627050	105	19565											
MYO9B	4650	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17298831	17298831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYO9B	NM_001130065	exon19	c.T2665C	p.Y889H	TCAGGGTACAGCG	.	152	47	384	2	.	67	C	17298831	T	C	17298831	3	2	152	1	0	0	0	0	1	0	0	0	10085	1638	57	2	2735	2	MYO9B	19	17298831	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		17298831	41830152	106	19566											
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18368011	18368011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KIAA1683	NM_001145304	exon4	c.C4083A	p.H1361Q	ATGCATGTGCCGT	.	39	13	115	0	.	92	T	18368011	G	T	18368011	3	4	152	1	0	0	0	0	1	0	0	0	8251	1368	48	3	24	3	KIAA1683	19	18368011	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	1069180	18368011	40760972	107	19567											
SLC7A9	11136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33324221	33324221	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC7A9	NM_001243036	exon12	c.A1233T	p.V411V	AATGACTACGGGC	.	152	45	430	1	.	91	A	33324221	T	A	33324221	2	1	152	1	0	0	0	0	0	0	0	1	14705	1509	53	4		4	SLC7A9	19	33324221	Silent	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	14956210	33324221	25804762	108	19568											
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37310028	37310029	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	p.S406N	GTGTGAGCTCCAA	.	42	12	97	0	.	.	AT	37310029	GC	AT	37310028	3	1	152	1	0	0	0	0	1	0	0	0	18159	962	34	3	696	3	ZNF790	19	37310028	Missense_Mutation	DNP	GC	TCGA-G3-A5SJ-01A-11D-A27I-10	3985807	37310028	21818955	109	19569											
ZNF420	147923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37582003	37582003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF420	NM_144689	exon4	c.A116G	p.Y39C	AGAACTATAGCAA	.	90	21	151	0	.	90	G	37582003	A	G	37582003	3	3	152	1	0	0	0	0	1	0	0	0	17894	449	16	2	122	2	ZNF420	19	37582003	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	271975	37582003	21546980	110	19570											
MAVS	57506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3845200	3845200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAVS	NM_020746	exon6	c.T923C	p.V308A	ACACAGTGGCCCT	.	67	22	211	1	.	90	C	3845200	T	C	3845200	3	2	152	1	0	0	0	0	1	0	0	0	9338	1696	59	2	941	2	MAVS	20	3845200	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10		3845200	59180320	111	19571											
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	34319990	34319990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RBM39	NM_184234	exon4	c.C169T	p.R57X	TACTTCGCTTCCG	.	57	18	143	0	.	91	A	34319990	G	A	34319990	4	1	152	1	0	0	0	0	0	1	0	0	13133	1095	38	1	1479	1	RBM39	20	34319990	Nonsense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	30474790	34319990	28705530	112	19572											
SREBF2	6721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42271606	42271606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SREBF2	NM_004599	exon7	c.G1264A	p.E422K	AAGATCGAGGACT	.	88	13	253	1	.	154	A	42271606	G	A	42271606	3	1	152	1	0	0	0	0	1	0	0	0	15141	1059	37	1	1290	1	SREBF2	22	42271606	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10		42271606	9032960	113	19573											
ALG12	79087	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50303561	50303561	+	Silent	SNP	C	C	T	rs12167668	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ALG12	NM_024105	exon5	c.G645A	p.P215P	CCCTGCCGGGACG	.	81	9	263	0	C|0.993;T|0.007	90	T	50303561	C	T	50303561	2	4	152	1	0	0	0	0	0	0	0	1	514	639	23	1		1	ALG12	22	50303561	Silent	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10	8031955	50303561	1001005	114	19574											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51169547	51169547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SHANK3	NM_033517	exon22	c.G4961T	p.W1654L	AGCTCTGGAGCAA	.	18	5	83	0	.	69	T	51169547	G	T	51169547	3	4	152	1	0	0	0	0	1	0	0	0	14266	1357	47	3	5141	3	SHANK3	22	51169547	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	865986	51169547	135019	115	19575											
SYAP1	94056	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16761852	16761852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SYAP1	NM_032796	exon5	c.C464A	p.P155Q	ACCCTCCGGCTGG	.	23	15	77	1	.	131	A	16761852	C	A	16761852	3	1	152	1	0	0	0	0	1	0	0	0	15423	652	23	1	482	1	SYAP1	23	16761852	Missense_Mutation	SNP	C	TCGA-G3-A5SJ-01A-11D-A27I-10		16761852	138508708	116	19576											
GRIPAP1	56850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48834814	48834814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GRIPAP1	NM_020137	exon22	c.C1964T	p.S655L	CTTGGTGAGTTCA	.	21	20	62	2	.	227	A	48834814	G	A	48834814	3	1	152	1	0	0	0	0	1	0	0	0	6789	1294	45	3	635	3	GRIPAP1	23	48834814	Missense_Mutation	SNP	G	TCGA-G3-A5SJ-01A-11D-A27I-10	32072962	48834814	106435746	117	19577											
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84526390	84526390	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF711	NM_021998	exon9	c.T1842C	p.T614T	CCATACTAAGGAT	.	85	49	200	1	.	134	C	84526390	T	C	84526390	2	2	152	1	0	0	0	0	0	0	0	1	18113	1509	53	2		2	ZNF711	23	84526390	Silent	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	35691576	84526390	70744170	118	19578											
TCEAL8	90843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	102508744	102508744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TCEAL8	NM_001006684	exon2	c.A164G	p.N55S	GGCTGATTCGGCC	.	75	4	184	0	.	131	C	102508744	T	C	102508744	3	2	152	1	0	0	0	0	1	0	0	0	15674	1493	52	2	193	2	TCEAL8	23	102508744	Missense_Mutation	SNP	T	TCGA-G3-A5SJ-01A-11D-A27I-10	17982354	102508744	52761816	119	19579											
PHF6	84295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133527959	133527959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHF6	NM_032335	exon5	c.A395G	p.K132R	AACACAAGAAAAC	.	51	27	125	0	.	131	G	133527959	A	G	133527959	3	3	152	1	0	0	0	0	1	0	0	0	11838	72	3	2	409	2	PHF6	23	133527959	Missense_Mutation	SNP	A	TCGA-G3-A5SJ-01A-11D-A27I-10	31019215	133527959	21742601	120	19580											
MEGF6	1953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3432019	3432019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEGF6	NM_001409	exon6	c.G677A	p.R226H	TGGCAGCGATGCC	.	197	65	134	1	.	90	T	3432019	C	T	3432019	3	4	153	1	0	0	0	0	1	0	0	0	9462	768	27	1	4076	1	MEGF6	1	3432019	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		3432019	245818602	1	19581											
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22848029	22848029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZBTB40	NM_001083621	exon16	c.C3089A	p.P1030H	ACCACCCTGACGT	.	713	223	453	1	.	91	A	22848029	C	A	22848029	3	1	153	1	0	0	0	0	1	0	0	0	17539	681	24	3	3143	3	ZBTB40	1	22848029	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	19416010	22848029	226402592	2	19582											
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39879769	39879769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_015038	exon1	c.G3832A	p.E1278K	ACCCCCGAGGAGC	.	145	55	91	0	.	.	A	39879769	G	A	39879769	3	1	153	1	0	0	0	0	1	0	0	0	8192	1059	37	1	3834	1	KIAA0754	1	39879769	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	17031740	39879769	209370852	3	19583											
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	147381088	147381088	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GJA8	NM_005267	exon2	c.1006delC	p.P336fs	GAGGGGCCGCCTG	.	201	39	115	0	.	138	-	147381088	C	-	147381088	7	5	153	1	0	1	0	1	0	0	0	0	6405	739	26	0	1008	0	GJA8	1	147381088	Frame_Shift_Del	DEL	C	TCGA-G3-A5SK-01A-11D-A27I-10	107501319	147381088	101869533	4	19584											
FLG	2312	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	152279760	152279760	+	Silent	SNP	G	G	A	rs3126073	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FLG	NM_002016	exon3	c.C7602T	p.H2534H	TTCATGGTGACGC	.	361	99	225	0	G|0.987;A|0.013	106	A	152279760	G	A	152279760	2	1	153	1	0	0	0	0	0	0	0	1	5922	1252	44	3		3	FLG	1	152279760	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	4898672	152279760	96970861	5	19585											
S100A4	6275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153517143	153517143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	S100A4	NM_002961	exon2	c.C128A	p.P43H	AAGCTGGGCAGCT	.	179	53	109	0	.	90	T	153517143	G	T	153517143	3	4	153	1	0	0	0	0	1	0	0	0	13780	1232	43	3	185	3	S100A4	1	153517143	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	1237383	153517143	95733478	6	19586											
SLC27A3	11000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153750269	153750269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC27A3	NM_024330	exon4	c.G1210C	p.A404P	TTCTCGGCTGGTC	.	267	12	105	0	.	91	C	153750269	G	C	153750269	3	2	153	1	0	0	0	0	1	0	0	0	14527	1203	42	4	1224	4	SLC27A3	1	153750269	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	233126	153750269	95500352	7	19587											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201058470	201058470	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CACNA1S	NM_000069	exon6	c.C816T	p.I272I	GTGGGTGATGCCA	.	419	170	202	0	.	94	A	201058470	G	A	201058470	2	1	153	1	0	0	0	0	0	0	0	1	2547	1280	45	3		3	CACNA1S	1	201058470	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	47308201	201058470	48192151	8	19588											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215960064	215960064	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	USH2A	NM_206933	exon52	c.A10335G	p.S3445S	GGCAGATGAACAC	.	505	145	235	0	.	115	C	215960064	T	C	215960064	2	2	153	1	0	0	0	0	0	0	0	1	17033	1451	51	2		2	USH2A	1	215960064	Silent	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	14901594	215960064	33290557	9	19589											
MIA3	375056	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	222805522	222805522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MIA3	NM_198551	exon5	c.A3185G	p.H1062R	CACTGCATGAAGA	.	433	99	205	1	.	98	G	222805522	A	G	222805522	3	3	153	1	0	0	0	0	1	0	0	0	9565	217	8	2	3203	2	MIA3	1	222805522	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	6845458	222805522	26445099	10	19590											
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	230468595	230468595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PGBD5	NM_001258311	exon5	c.A1268G	p.Q423R	CCCTGCTGCACCG	.	293	22	198	0	.	93	C	230468595	T	C	230468595	3	2	153	1	0	0	0	0	1	0	0	0	11784	1580	55	2	318	2	PGBD5	1	230468595	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	7663073	230468595	18782026	11	19591											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237823313	237823313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RYR2	NM_001035	exon55	c.T8237C	p.I2746T	GAGAAATATATTC	.	63	19	57	0	.	158	C	237823313	T	C	237823313	3	2	153	1	0	0	0	0	1	0	0	0	13769	1406	49	2	8455	2	RYR2	1	237823313	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	7354718	237823313	11427308	12	19592											
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248487546	248487546	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR2M7	NM_001004691	exon1	c.G325C	p.G109R	CGGAGCCAAGCAA	.	414	188	197	1	.	70	G	248487546	C	G	248487546	3	3	153	1	0	0	0	0	1	0	0	0	11014	594	21	4	616	4	OR2M7	1	248487546	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	10664233	248487546	763075	13	19593											
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25059801	25059801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADCY3	NM_004036	exon8	c.G1647T	p.E549D	CTGCTCCTCGGGC	.	181	57	109	1	.	94	A	25059801	C	A	25059801	3	1	153	1	0	0	0	0	1	0	0	0	295	680	24	3	1843	3	ADCY3	2	25059801	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		25059801	218139572	14	19594											
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62107453	62107453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CCT4	NM_006430	exon4	c.T347G	p.L116R	TCTAAGAGGGAGC	.	117	32	78	0	.	92	C	62107453	A	C	62107453	3	2	153	1	0	0	0	0	1	0	0	0	2955	304	11	5	1316	5	CCT4	2	62107453	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	37047652	62107453	181091920	15	19595											
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	65305033	65305033	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CEP68	NM_015147	exon5	c.C2039G	p.S680C	ATCAGTCTCTGAC	.	147	42	103	0	.	91	G	65305033	C	G	65305033	3	3	153	1	0	0	0	0	1	0	0	0	3258	913	32	4	2053	4	CEP68	2	65305033	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	3197580	65305033	177894340	16	19596											
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125547604	125547604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CNTNAP5	NM_130773	exon18	c.C2875A	p.H959N	CCCGGCCACTGCA	.	332	98	230	2	.	524	A	125547604	C	A	125547604	3	1	153	1	0	0	0	0	1	0	0	0	3650	594	21	3	2945	3	CNTNAP5	2	125547604	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	60242571	125547604	117651769	17	19597											
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	139428566	139428566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NXPH2	NM_007226	exon2	c.G721C	p.D241H	TATAATCAACACT	.	90	31	58	0	.	72	G	139428566	C	G	139428566	3	3	153	1	0	0	0	0	1	0	0	0	10791	826	29	4	77	4	NXPH2	2	139428566	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	13880962	139428566	103770807	18	19598											
HOXD12	3238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176964643	176964643	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_021193	exon1	c.G114C	p.A38A	GGCCGCGCTTCCC	.	48	10	39	0	.	.	C	176964643	G	C	176964643	2	2	153	1	0	0	0	0	0	0	0	1	7321	1074	38	4		4	HOXD12	2	176964643	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	37536077	176964643	66234730	19	19599											
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191077767	191077767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	HIBCH	NM_014362	exon12	c.T926G	p.I309S	AGTGTGATCTTTA	.	26	8	34	0	.	90	C	191077767	A	C	191077767	3	2	153	1	0	0	0	0	1	0	0	0	7100	333	12	5	246	5	HIBCH	2	191077767	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	14113124	191077767	52121606	20	19600											
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	55108222	55108222	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CACNA2D3	NM_018398	exon38	c.T3265G	p.F1089V	ATGCTCTTCTCAA	.	208	10	118	0	.	138	G	55108222	T	G	55108222	3	3	153	1	0	0	0	0	1	0	0	0	2550	1609	56	5	3415	5	CACNA2D3	3	55108222	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10		55108222	142914208	21	19601											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113373818	113373818	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA2018	NM_001009899	exon7	c.A6711G	p.L2237L	ATGACCTAGAATA	.	184	62	128	0	.	93	C	113373818	T	C	113373818	2	2	153	1	0	0	0	0	0	0	0	1	8268	1509	53	2		2	KIAA2018	3	113373818	Silent	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	58265596	113373818	84648612	22	19602											
GP9	2815	broad.mit.edu;mdanderson.org	37	3	128781113	128781113	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GP9	NM_000174	exon3	c.T531C	p.D177D	CCTGGATTGAGCC	.	30	9	31	0	.	90	C	128781113	T	C	128781113	2	2	153	1	0	0	0	0	0	0	0	1	6585	1490	52	2		2	GP9	3	128781113	Silent	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	15407295	128781113	69241317	23	19603											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130104098	130104098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_153264	exon5	c.A1752G	p.I584M	TAAAATAGAACTG	.	80	29	76	0	.	.	G	130104098	A	G	130104098	3	3	153	1	0	0	0	0	1	0	0	0	3702	410	15	2	1766	2	COL6A5	3	130104098	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	1322985	130104098	67918332	24	19604											
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132050504	132050504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ACPP	NM_001099	exon3	c.A230T	p.Q77L	TGGAGCAGCATTA	.	90	27	94	0	.	91	T	132050504	A	T	132050504	3	4	153	1	0	0	0	0	1	0	0	0	167	188	7	4	240	4	ACPP	3	132050504	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	1946406	132050504	65971926	25	19605											
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6864199	6864199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA0232	NM_014743	exon7	c.T2090A	p.F697Y	GTGCCTTTGAAGA	.	244	86	188	0	.	92	A	6864199	T	A	6864199	3	1	153	1	0	0	0	0	1	0	0	0	8163	1841	64	4	2108	4	KIAA0232	4	6864199	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10		6864199	184290077	26	19606											
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48073678	48073678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TXK	NM_003328	exon14	c.G1371T	p.W457C	AACTTCCCACATT	.	46	13	25	0	.	521	A	48073678	C	A	48073678	3	1	153	1	0	0	0	0	1	0	0	0	16783	624	22	3	220	3	TXK	4	48073678	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	41209479	48073678	143080598	27	19607											
CWH43	80157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	49046853	49046853	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CWH43	NM_025087	exon14	c.A1854G	p.R618R	GTATCGAGGGCTG	.	92	19	85	0	.	93	G	49046853	A	G	49046853	2	3	153	1	0	0	0	0	0	0	0	1	4073	291	11	2		2	CWH43	4	49046853	Silent	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	973175	49046853	142107423	28	19608											
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74281995	74281995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ALB	NM_000477	exon10	c.T1214C	p.V405A	CTCTTGTGGAAGA	.	133	29	142	1	.	96	C	74281995	T	C	74281995	3	2	153	1	0	0	0	0	1	0	0	0	486	1696	59	2	1252	2	ALB	4	74281995	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	25235142	74281995	116872281	29	19609											
SH3RF1	57630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170077556	170077556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SH3RF1	NM_020870	exon3	c.A668C	p.K223T	TTTACCTTTGCAA	.	253	92	184	0	.	567	G	170077556	T	G	170077556	3	3	153	1	0	0	0	0	1	0	0	0	14258	1623	56	5	2038	5	SH3RF1	4	170077556	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	95795561	170077556	21076720	30	19610											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	175897719	175897719	+	Missense_Mutation	SNP	G	G	A	rs201308805		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAM29	NM_001130703	exon4	c.G1043A	p.R348H	CATGTCGTTGTTC	.	173	12	149	0	.	729	A	175897719	G	A	175897719	3	1	153	1	0	0	0	0	1	0	0	0	247	1145	40	1	1045	1	ADAM29	4	175897719	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	5820163	175897719	15256557	31	19611											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175898784	175898784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAM29	NM_001130703	exon4	c.C2108G	p.P703R	GTAAACCAATAAA	.	57	17	59	0	.	729	G	175898784	C	G	175898784	3	3	153	1	0	0	0	0	1	0	0	0	247	594	21	4	2110	4	ADAM29	4	175898784	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	1065	175898784	15255492	32	19612											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	7892874	7892874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MTRR	NM_024010	exon11	c.G1486C	p.V496L	CATTTTGTCTTCA	.	213	14	150	0	.	91	C	7892874	G	C	7892874	3	2	153	1	0	0	0	0	1	0	0	0	9961	1377	48	4	1528	4	MTRR	5	7892874	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		7892874	173022386	33	19613											
FAM105A	54491	broad.mit.edu;bcgsc.ca	37	5	14608988	14608988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM105A	NM_019018	exon7	c.A759C	p.E253D	CACTGAAGTTTAT	.	87	5	61	0	.	91	C	14608988	A	C	14608988	3	2	153	1	0	0	0	0	1	0	0	0	5387	69	3	5	785	5	FAM105A	5	14608988	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	6716114	14608988	166306272	34	19614											
RXFP3	51289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	33938060	33938060	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RXFP3	NM_016568	exon1	c.G1215A	p.W405X	GCTGTGGCGCATC	.	115	46	74	0	.	91	A	33938060	G	A	33938060	4	1	153	1	0	0	0	0	0	1	0	0	13761	1212	42	3	1217	3	RXFP3	5	33938060	Nonsense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	19329072	33938060	146977200	35	19615											
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50685666	50685666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ISL1	NM_002202	exon4	c.C665A	p.P222H	TCAGTCCCCGTGT	.	256	84	148	0	.	515	A	50685666	C	A	50685666	3	1	153	1	0	0	0	0	1	0	0	0	7856	623	22	3	679	3	ISL1	5	50685666	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	16747606	50685666	130229594	36	19616											
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143853624	143853624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KCTD16	NM_020768	exon4	c.C1234T	p.P412S	CGGTTTCCTGAGA	.	91	25	92	0	.	137	T	143853624	C	T	143853624	3	4	153	1	0	0	0	0	1	0	0	0	8103	855	30	3	1240	3	KCTD16	5	143853624	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	93167958	143853624	37061636	37	19617											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	176721088	176721088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NSD1	NM_022455	exon23	c.C6719A	p.S2240X	AGCAATCAACAGG	.	87	34	79	0	.	188	A	176721088	C	A	176721088	4	1	153	1	0	0	0	0	0	1	0	0	10669	838	29	3	6805	3	NSD1	5	176721088	Nonsense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	32867464	176721088	4194172	38	19618											
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30138285	30138285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRIM15	NM_033229	exon5	c.A739C	p.M247L	TGTGAGATGAAGA	.	106	29	63	0	.	90	C	30138285	A	C	30138285	3	2	153	1	0	0	0	0	1	0	0	0	16487	333	12	5	757	5	TRIM15	6	30138285	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10		30138285	140976782	39	19619											
FAM46A	55603	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	82459698	82459698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM46A	NM_017633	exon3	c.A1043G	p.E348G	CGGTCTTCCAATC	.	159	47	143	1	.	90	C	82459698	T	C	82459698	3	2	153	1	0	0	0	0	1	0	0	0	5565	1783	62	2	289	2	FAM46A	6	82459698	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	52321413	82459698	88655369	40	19620											
EPB41L2	2037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131179313	131179313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EPB41L2	NM_001431	exon19	c.A2981G	p.H994R	TCTTTGTGTACCA	.	193	69	146	0	.	91	C	131179313	T	C	131179313	3	2	153	1	0	0	0	0	1	0	0	0	5153	1696	59	2	40	2	EPB41L2	6	131179313	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	48719615	131179313	39935754	41	19621											
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161139737	161139737	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PLG	NM_000301	exon9	c.A963G	p.E321E	GGATGAAAACTAC	.	233	24	189	0	.	94	G	161139737	A	G	161139737	2	3	153	1	0	0	0	0	0	0	0	1	12086	11	1	2		2	PLG	6	161139737	Silent	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	29960424	161139737	9975330	42	19622											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3658865	3658865	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SDK1	NM_152744	exon2	c.A452T	p.E151V	GCAGCGAATATAA	.	152	47	90	0	.	138	T	3658865	A	T	3658865	3	4	153	1	0	0	0	0	1	0	0	0	13968	246	9	4	458	4	SDK1	7	3658865	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10		3658865	155479798	43	19623											
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33397473	33397473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BBS9	NM_198428	exon16	c.C1559T	p.P520L	GCATTCCGCGAGT	.	46	17	39	0	.	230	T	33397473	C	T	33397473	3	4	153	1	0	0	0	0	1	0	0	0	1342	652	23	1	1617	1	BBS9	7	33397473	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	29738608	33397473	125741190	44	19624											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44797559	44797559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZMIZ2	NM_174929	exon5	c.C665G	p.S222C	GCCCCTCTGGCCT	.	124	41	91	0	.	137	G	44797559	C	G	44797559	3	3	153	1	0	0	0	0	1	0	0	0	17694	913	32	4	683	4	ZMIZ2	7	44797559	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	11400086	44797559	114341104	45	19625											
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107342429	107342429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC26A4	NM_000441	exon17	c.C1961T	p.P654L	AAGTGCCAATCCA	.	263	83	212	0	.	96	T	107342429	C	T	107342429	3	4	153	1	0	0	0	0	1	0	0	0	14519	594	21	3	2023	3	SLC26A4	7	107342429	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	62544870	107342429	51796234	46	19626											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653216	121653216	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PTPRZ1	NM_002851	exon12	c.G4116C	p.G1372G	AAATGGGCATGTT	.	235	63	196	0	.	699	C	121653216	G	C	121653216	2	2	153	1	0	0	0	0	0	0	0	1	12814	1190	42	4		4	PTPRZ1	7	121653216	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	14310787	121653216	37485447	47	19627											
WDR86	349136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151093228	151093228	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_198285	exon3	c.G360C	p.R120R	CCAGACCCGAGCT	.	84	24	54	0	.	.	G	151093228	C	G	151093228	2	3	153	1	0	0	0	0	0	0	0	1	17331	610	22	4		4	WDR86	7	151093228	Silent	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	29440012	151093228	8045435	48	19628											
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10466903	10466903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RP1L1	NM_178857	exon4	c.C4705A	p.Q1569K	TGTCCTGGAGGCG	.	46	5	42	0	.	139	T	10466903	G	T	10466903	3	4	153	1	0	0	0	0	1	0	0	0	13533	1357	47	3	2501	3	RP1L1	8	10466903	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		10466903	135897119	49	19629											
ESRP1	54845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95677274	95677274	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ESRP1	NM_001122827	exon8	c.875delC	p.T292fs	TGGGGACCCGGTA	.	276	86	231	0	.	94	-	95677274	C	-	95677274	7	5	153	1	0	1	0	1	0	0	0	0	5258	507	18	0	905	0	ESRP1	8	95677274	Frame_Shift_Del	DEL	C	TCGA-G3-A5SK-01A-11D-A27I-10	85210371	95677274	50686748	50	19630											
SDC2	6383	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	97621749	97621749	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SDC2	NM_002998	exon5	c.G579A	p.K193K	TCAGAAGGCACCT	.	148	41	80	2	.	516	A	97621749	G	A	97621749	2	1	153	1	0	0	0	0	0	0	0	1	13952	991	35	3		3	SDC2	8	97621749	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	1944475	97621749	48742273	51	19631											
DMRTA1	63951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	22447695	22447695	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DMRTA1	NM_022160	exon1	c.G631T	p.E211X	GCTTTCGAAGTTT	.	148	42	135	0	.	578	T	22447695	G	T	22447695	4	4	153	1	0	0	0	0	0	1	0	0	4588	1059	37	1	633	1	DMRTA1	9	22447695	Nonsense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		22447695	118765736	52	19632											
FAM166B	730112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35563264	35563264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_001099951	exon2	c.C185T	p.P62L	ATGGGAGGCAGAA	.	178	53	134	0	.	.	A	35563264	G	A	35563264	3	1	153	1	0	0	0	0	1	0	0	0	5482	1000	35	3	481	3	FAM166B	9	35563264	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	13115569	35563264	105650167	53	19633											
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71840272	71840272	+	Silent	SNP	G	G	T	rs140444730	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TJP2	NM_001170416	exon6	c.G1098T	p.T366T	CCGAACGGGTCTG	.	121	47	94	0	G|0.999;A|0.000	115	T	71840272	G	T	71840272	2	4	153	1	0	0	0	0	0	0	0	1	15927	1103	39	1		1	TJP2	9	71840272	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	36277008	71840272	69373159	54	19634											
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	72503886	72503886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAMTS14	NM_139155	exon14	c.G2132T	p.G711V	GCGGGGGTGACAA	.	161	10	122	0	.	232	T	72503886	G	T	72503886	3	4	153	1	0	0	0	0	1	0	0	0	259	1261	44	3	2186	3	ADAMTS14	10	72503886	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		72503886	63030861	55	19635											
CYP2E1	1571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135340926	135340949	+	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	CCTGCTGGTGTGGGCGGCCTTCCT	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	CCTGCTGGTGTGGGCGGCCTTCCT	CCTGCTGGTGTGGGCGGCCTTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CYP2E1	NM_000773	exon1	c.27_50del	p.9_17del	CGTGGCCCTGCTG	.	32	8	65	0	.	514	-	135340949	CCTGCTGGTGTGGGCGGCCTTCCT	-	135340926	7	5	153	1	0	1	0	1	0	0	0	0	4170	610	22	0	29	0	CYP2E1	10	135340926	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	TCGA-G3-A5SK-01A-11D-A27I-10	62837040	135340926	193821	56	19636											
DCDC1	341019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	31312242	31312242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCDC1	NM_181807	exon7	c.G912A	p.M304I	CTGCCCCATGCCA	.	161	11	125	0	.	91	T	31312242	C	T	31312242	3	4	153	1	0	0	0	0	1	0	0	0	4284	594	21	3	164	3	DCDC1	11	31312242	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		31312242	103694274	57	19637											
OR5T1	390155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56043388	56043388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR5T1	NM_001004745	exon1	c.A274G	p.K92E	ACTCCAAAAATGT	.	111	40	79	0	.	71	G	56043388	A	G	56043388	3	3	153	1	0	0	0	0	1	0	0	0	11181	15	1	2	276	2	OR5T1	11	56043388	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	24731146	56043388	78963128	58	19638											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92538485	92538485	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAT3	NM_001008781	exon10	c.T9063C	p.D3021D	CAGTGATGTGAAT	.	230	71	198	0	.	73	C	92538485	T	C	92538485	2	2	153	1	0	0	0	0	0	0	0	1	5691	1461	51	2		2	FAT3	11	92538485	Silent	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	36495097	92538485	42468031	59	19639											
BIRC2	329	hgsc.bcm.edu;broad.mit.edu	37	11	102221361	102221362	+	In_Frame_Ins	INS	-	-	TAG	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BIRC2	NM_001256163	exon2	c.776_777insTAG	p.F259delinsFS	TGAGGTTTAGCAT	.	50	0	32	0	.	660	TAG	102221362	-	TAG	102221361	7	5	153	1	0	1	1	0	0	0	0	0	1435	1841	64	0	778	0	BIRC2	11	102221361	In_Frame_Ins	INS	-	TCGA-G3-A5SK-01A-11D-A27I-10	9682876	102221361	32785155	60	19640											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108383488	108383488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EXPH5	NM_015065	exon6	c.C2746A	p.P916T	GCGATGGATCTTT	.	89	28	77	0	.	95	T	108383488	G	T	108383488	3	4	153	1	0	0	0	0	1	0	0	0	5322	1174	41	3	3227	3	EXPH5	11	108383488	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	6162127	108383488	26623028	61	19641											
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128839106	128839106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ARHGAP32	NM_001142685	exon22	c.A5960G	p.H1987R	AGGCTATGACTCC	.	266	25	198	0	.	231	C	128839106	T	C	128839106	3	2	153	1	0	0	0	0	1	0	0	0	881	1464	51	2	307	2	ARHGAP32	11	128839106	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	20455618	128839106	6167410	62	19642											
IRAK3	11213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66611016	66611016	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IRAK3	NM_007199	exon6	c.653+1G>T	.	ACTACTGTGAGTA	.	88	28	107	0	.	1379	T	66611016	G	T	66611016	5	4	153	1	0	0	0	0	0	0	1	0	7824	1391	48	3	676	3	IRAK3	12	66611016	Splice_Site	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		66611016	67240879	63	19643											
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99028193	99028193	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IKBIP	NM_201612	exon3	c.180-2A>T	.	CAAACCTGGAAAA	.	35	15	45	0	.	226	A	99028193	T	A	99028193	5	1	153	1	0	0	0	0	0	0	1	0	7609	1594	55	4	1723	4	IKBIP	12	99028193	Splice_Site	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	32417177	99028193	34823702	64	19644											
SLC39A9	55334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69925257	69925257	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC39A9	NM_018375	exon7	c.C871G	p.L291V	GCAGCCCTGGTTC	.	143	48	73	0	.	90	G	69925257	C	G	69925257	3	3	153	1	0	0	0	0	1	0	0	0	14625	680	24	4	897	4	SLC39A9	14	69925257	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		69925257	37424283	65	19645											
MAP3K9	4293	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71215655	71215655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MAP3K9	NM_033141	exon5	c.T1217C	p.I406T	TCCTCTATGGTGG	.	286	94	201	1	.	546	G	71215655	A	G	71215655	3	3	153	1	0	0	0	0	1	0	0	0	9257	449	16	2	2175	2	MAP3K9	14	71215655	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	1290398	71215655	36133885	66	19646											
CYP46A1	10858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100191750	100191750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CYP46A1	NM_006668	exon13	c.G1199A	p.R400Q	TGGGGCGGATGGA	.	151	49	113	0	.	90	A	100191750	G	A	100191750	3	1	153	1	0	0	0	0	1	0	0	0	4182	1116	39	1	1249	1	CYP46A1	14	100191750	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	28976095	100191750	7157790	67	19647											
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28421656	28421656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	HERC2	NM_004667	exon63	c.C9604G	p.L3202V	CATTTAGTCTCTC	.	281	81	209	1	.	234	C	28421656	G	C	28421656	3	2	153	1	0	0	0	0	1	0	0	0	7058	1020	36	4	5024	4	HERC2	15	28421656	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		28421656	74109736	68	19648											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42159172	42159172	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SPTBN5	NM_016642	exon36	c.C6360T	p.T2120T	GGCCTGGGTGAAG	.	102	43	78	0	.	91	A	42159172	G	A	42159172	2	1	153	1	0	0	0	0	0	0	0	1	15121	1219	43	3		3	SPTBN5	15	42159172	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	13737516	42159172	60372220	69	19649											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	27772791	27772791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA0556	NM_015202	exon19	c.G3689A	p.G1230D	TCACTGGCCTGGA	.	101	8	55	0	.	141	A	27772791	G	A	27772791	3	1	153	1	0	0	0	0	1	0	0	0	8183	1203	42	3	3763	3	KIAA0556	16	27772791	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		27772791	62581962	70	19650											
CNGB1	1258	ucsc.edu;bcgsc.ca	37	16	57951296	57951296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CNGB1	NM_001297	exon21	c.C2042T	p.P681L	TGGTAGGGGAAGG	.	532	139	238	2	.	137	A	57951296	G	A	57951296	3	1	153	1	0	0	0	0	1	0	0	0	3600	1232	43	3	1765	3	CNGB1	16	57951296	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	30178505	57951296	32403457	71	19651											
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu	37	17	1381960	1381960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MYO1C	NM_001080779	exon10	c.C1162T	p.R388C	AAGTGCGGCTGTA	.	145	6	124	0	.	90	A	1381960	G	A	1381960	3	1	153	1	0	0	0	0	1	0	0	0	10070	1116	39	1	2121	1	MYO1C	17	1381960	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10		1381960	79813250	72	19652											
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3481004	3481004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRPV1	NM_018727	exon11	c.T1601G	p.L534R	TCCTTGAGGTGGC	.	171	89	149	0	.	23	C	3481004	A	C	3481004	3	2	153	1	0	0	0	0	1	0	0	0	16592	304	11	5	615	5	TRPV1	17	3481004	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	2099044	3481004	77714206	73	19653											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11725907	11725907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNAH9	NM_001372	exon47	c.G9003T	p.E3001D	CACAGAGGGCATT	.	123	51	115	0	.	168	T	11725907	G	T	11725907	3	4	153	1	0	0	0	0	1	0	0	0	4608	991	35	3	9189	3	DNAH9	17	11725907	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	8244903	11725907	69469303	74	19654											
ZNF287	57336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	16470785	16470785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZNF287	NM_020653	exon2	c.A261C	p.Q87H	CAAAATTTGTTCC	.	177	10	108	0	.	90	G	16470785	T	G	16470785	3	3	153	1	0	0	0	0	1	0	0	0	17822	1838	64	5	2044	5	ZNF287	17	16470785	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	4744878	16470785	64724425	75	19655											
ALKBH5	54890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18110272	18110272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ALKBH5	NM_017758	exon3	c.A995T	p.D332V	ACCCTGATGCTGC	.	124	43	72	0	.	90	T	18110272	A	T	18110272	3	4	153	1	0	0	0	0	1	0	0	0	530	333	12	4	1005	4	ALKBH5	17	18110272	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	1639487	18110272	63084938	76	19656											
CWC25	54883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36958366	36958366	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_017748	exon10	c.G1257A	p.E419E	GTTCTTCTCCAGA	.	118	35	65	0	.	.	T	36958366	C	T	36958366	2	4	153	1	0	0	0	0	0	0	0	1	4069	912	32	3		3	CWC25	17	36958366	Silent	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	18848094	36958366	44236844	77	19657											
FKBP10	60681	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39975544	39975544	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FKBP10	NM_021939	exon5	c.A810G	p.L270L	CCAGCTAGAGACG	.	152	7	108	0	.	227	G	39975544	A	G	39975544	2	3	153	1	0	0	0	0	0	0	0	1	5902	407	15	2		2	FKBP10	17	39975544	Silent	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	3017178	39975544	41219666	78	19658											
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74076379	74076379	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZACN	NM_180990	exon5	c.G418C	p.D140H	CGAGTAGACCAGG	.	245	75	137	0	.	90	C	74076379	G	C	74076379	3	2	153	1	0	0	0	0	1	0	0	0	17507	942	33	4	436	4	ZACN	17	74076379	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	34100835	74076379	7118831	79	19659											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76440846	76440846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNAH17	NM_173628	exon71	c.G11368T	p.D3790Y	CACTGTCCAGATT	.	200	66	118	0	.	142	A	76440846	C	A	76440846	3	1	153	1	0	0	0	0	1	0	0	0	4601	855	30	3	2064	3	DNAH17	17	76440846	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	2364467	76440846	4754364	80	19660											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63489356	63489356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CDH7	NM_004361	exon5	c.C665T	p.A222V	GAGAGGCTAAAGA	.	176	45	134	0	.	94	T	63489356	C	T	63489356	3	4	153	1	0	0	0	0	1	0	0	0	3115	797	28	3	679	3	CDH7	18	63489356	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		63489356	14587892	81	19661											
GALR1	2587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	74980684	74980684	+	Silent	SNP	G	G	T	rs199730182	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GALR1	NM_001480	exon3	c.G876T	p.A292A	CCTGGCGTACAGC	.	124	41	76	0	G|0.999;A|0.001	522	T	74980684	G	T	74980684	2	4	153	1	0	0	0	0	0	0	0	1	6227	1132	40	1		1	GALR1	18	74980684	Silent	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	11491328	74980684	3096564	82	19662											
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35940974	35940974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FFAR2	NM_005306	exon1	c.T358G	p.S120A	AAGCTCTCCCGCC	.	194	60	157	0	.	90	G	35940974	T	G	35940974	3	3	153	1	0	0	0	0	1	0	0	0	5828	1551	54	5	360	5	FFAR2	19	35940974	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10		35940974	23188009	83	19663											
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47910667	47910667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEIS3	NM_020160	exon9	c.G1015C	p.E339Q	TCTGCTCCTCCGA	.	79	20	39	0	.	90	G	47910667	C	G	47910667	3	3	153	1	0	0	0	0	1	0	0	0	9469	864	30	4	266	4	MEIS3	19	47910667	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	11969693	47910667	11218316	84	19664											
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2635207	2635207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NOP56	NM_006392	exon4	c.C356G	p.A119G	TCATAGCTGAGAT	.	202	65	184	0	.	92	G	2635207	C	G	2635207	3	3	153	1	0	0	0	0	1	0	0	0	10539	797	28	4	370	4	NOP56	20	2635207	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		2635207	60390313	85	19665											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9371192	9371192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PLCB4	NM_182797	exon15	c.A1253G	p.Y418C	AACAGTACAAGAT	.	107	29	94	0	.	274	G	9371192	A	G	9371192	3	3	153	1	0	0	0	0	1	0	0	0	12030	391	14	2	1307	2	PLCB4	20	9371192	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10	6735985	9371192	53654328	86	19666											
CD93	22918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065572	23065572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CD93	NM_012072	exon1	c.G1258A	p.E420K	CGTCCTCCCCGGC	.	220	77	149	0	.	153	T	23065572	C	T	23065572	3	4	153	1	0	0	0	0	1	0	0	0	3047	864	30	3	708	3	CD93	20	23065572	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	13694380	23065572	39959948	87	19667											
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44506970	44506970	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZSWIM3	NM_080752	exon2	c.C1773G	p.L591L	GTACCTCCTTGGG	.	358	109	224	0	.	92	G	44506970	C	G	44506970	2	3	153	1	0	0	0	0	0	0	0	1	18239	842	30	4		4	ZSWIM3	20	44506970	Silent	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10	21441398	44506970	18518550	88	19668											
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43547324	43547324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	UMODL1	NM_173568	exon18	c.C3886A	p.P1296T	CGGGACCCCATCA	.	165	41	147	0	.	93	A	43547324	C	A	43547324	3	1	153	1	0	0	0	0	1	0	0	0	16977	623	22	3	3956	3	UMODL1	21	43547324	Missense_Mutation	SNP	C	TCGA-G3-A5SK-01A-11D-A27I-10		43547324	4582571	89	19669											
KDM5C	8242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53228047	53228047	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KDM5C	NM_004187	exon16	c.T2267A	p.L756H	GCAGGAAGCTCAT	.	252	157	149	1	.	1272	T	53228047	A	T	53228047	3	4	153	1	0	0	0	0	1	0	0	0	8135	72	3	4	2557	4	KDM5C	23	53228047	Missense_Mutation	SNP	A	TCGA-G3-A5SK-01A-11D-A27I-10		53228047	102042513	90	19670											
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73962088	73962088	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA2022	NM_001008537	exon3	c.A2304T	p.S768S	ACTGTTTGATGTC	.	85	63	62	0	.	183	A	73962088	T	A	73962088	2	1	153	1	0	0	0	0	0	0	0	1	8269	1799	63	4		4	KIAA2022	23	73962088	Silent	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	20734041	73962088	81308472	91	19671											
BRWD3	254065	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	79984393	79984393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BRWD3	NM_153252	exon14	c.C1244T	p.P415L	CCAGATGGCAAAT	.	279	18	121	1	.	134	A	79984393	G	A	79984393	3	1	153	1	0	0	0	0	1	0	0	0	1526	1348	47	3	4276	3	BRWD3	23	79984393	Missense_Mutation	SNP	G	TCGA-G3-A5SK-01A-11D-A27I-10	6022305	79984393	75286167	92	19672											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905414	144905414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLITRK2	NM_001144005	exon5	c.T1471A	p.F491I	AATATATTTGGGG	.	121	38	41	0	.	136	A	144905414	T	A	144905414	3	1	153	1	0	0	0	0	1	0	0	0	14743	1493	52	4	1473	4	SLITRK2	23	144905414	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	64921021	144905414	10365146	93	19673											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151818957	151818957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GABRQ	NM_018558	exon7	c.T815C	p.V272A	TGCAAGTCTACTG	.	445	171	148	0	.	133	C	151818957	T	C	151818957	3	2	153	1	0	0	0	0	1	0	0	0	6175	1667	58	2	841	2	GABRQ	23	151818957	Missense_Mutation	SNP	T	TCGA-G3-A5SK-01A-11D-A27I-10	6913543	151818957	3451603	94	19674											
TP73	7161	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3649427	3649427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TP73	NM_005427	exon14	c.C1695A	p.N565K	TAGCAACGCGGCC	.	18	4	40	0	.	415	A	3649427	C	A	3649427	3	1	154	1	0	0	0	0	1	0	0	0	16390	535	19	1	1788	1	TP73	1	3649427	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10		3649427	245601194	1	19675											
AKR7A2	8574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19634996	19634996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AKR7A2	NM_003689	exon2	c.A439G	p.T147A	CCGGGGTGCCGTG	.	115	41	163	0	.	90	C	19634996	T	C	19634996	3	2	154	1	0	0	0	0	1	0	0	0	475	1696	59	2	664	2	AKR7A2	1	19634996	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	15985569	19634996	229615625	2	19676											
NR0B2	8431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27240341	27240341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NR0B2	NM_021969	exon1	c.G91A	p.A31T	GGACAGCCTTGAG	.	34	10	41	0	.	186	T	27240341	C	T	27240341	3	4	154	1	0	0	0	0	1	0	0	0	10614	739	26	3	690	3	NR0B2	1	27240341	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	7605345	27240341	222010280	3	19677											
KIAA1522	57648	broad.mit.edu;mdanderson.org	37	1	33236026	33236026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1522	NM_020888	exon6	c.T1246C	p.W416R	GACACCTGGAGCC	.	22	5	29	0	.	90	C	33236026	T	C	33236026	3	2	154	1	0	0	0	0	1	0	0	0	8238	1580	55	2	1268	2	KIAA1522	1	33236026	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	5995685	33236026	216014595	4	19678											
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63063267	63063267	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANGPTL3	NM_014495	exon1	c.A30A	p.X10X	TTTTATTGTTCCT	.	47	16	54	0	.	130	A	63063267	T	A	63063267	2	1	154	1	0	0	0	0	0	0	0	1	615	1800	63	4		4	ANGPTL3	1	63063267	Silent	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	29827241	63063267	186187354	5	19679											
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86964423	86964423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CLCA1	NM_001285	exon13	c.C2282T	p.A761V	TGAAGGCGGAAAT	.	132	25	138	0	.	91	T	86964423	C	T	86964423	3	4	154	1	0	0	0	0	1	0	0	0	3457	768	27	1	2332	1	CLCA1	1	86964423	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	23901156	86964423	162286198	6	19680											
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147086412	147086412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BCL9	NM_004326	exon6	c.A557G	p.N186S	TGGCCAATAAGTA	.	180	63	162	0	.	707	G	147086412	A	G	147086412	3	3	154	1	0	0	0	0	1	0	0	0	1381	101	4	2	567	2	BCL9	1	147086412	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	60121989	147086412	102164209	7	19681											
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157768011	157768011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FCRL1	NM_001159398	exon8	c.C1054A	p.Q352K	ACTCTTGGGGTAG	.	173	10	78	0	.	153	T	157768011	G	T	157768011	3	4	154	1	0	0	0	0	1	0	0	0	5794	1357	47	3	317	3	FCRL1	1	157768011	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	10681599	157768011	91482610	8	19682											
CD1C	911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158262506	158262506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CD1C	NM_001765	exon4	c.A731T	p.Q244L	ATGAACAGGAGCA	.	245	24	103	1	.	94	T	158262506	A	T	158262506	3	4	154	1	0	0	0	0	1	0	0	0	2976	188	7	4	745	4	CD1C	1	158262506	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	494495	158262506	90988115	9	19683											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158614175	158614175	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SPTA1	NM_003126	exon30	c.4206delG	p.G1402fs	ACAGTTCCCCTGG	.	165	42	77	0	.	142	-	158614175	C	-	158614175	7	5	154	1	0	1	0	1	0	0	0	0	15115	842	30	0	3145	0	SPTA1	1	158614175	Frame_Shift_Del	DEL	C	TCGA-G3-A5SL-01A-11D-A27I-10	351669	158614175	90636446	10	19684											
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158813151	158813151	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MNDA	NM_002432	exon3	c.C348T	p.P116P	TGCACCCACCGCA	.	315	65	181	0	.	94	T	158813151	C	T	158813151	2	4	154	1	0	0	0	0	0	0	0	1	9676	581	21	3		3	MNDA	1	158813151	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	198976	158813151	90437470	11	19685											
TAGLN2	8407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159888612	159888612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TAGLN2	NM_003564	exon5	c.G578A	p.G193E	GGCATCCCGTAGC	.	134	84	151	0	.	90	T	159888612	C	T	159888612	3	4	154	1	0	0	0	0	1	0	0	0	15536	623	22	3	25	3	TAGLN2	1	159888612	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	1075461	159888612	89362009	12	19686											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245347	177245347	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FAM5B	NM_021165	exon6	c.G789A	p.L263L	GGTGCTGCTGCCT	.	240	27	143	0	.	28	A	177245347	G	A	177245347	2	1	154	1	0	0	0	0	0	0	0	1	5593	1306	46	3		3	FAM5B	1	177245347	Silent	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	17356735	177245347	72005274	13	19687											
SMG7	9887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183515162	183515162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SMG7	NM_173156	exon17	c.G2432T	p.G811V	CATTAGGGAAAAT	.	240	47	140	2	.	92	T	183515162	G	T	183515162	3	4	154	1	0	0	0	0	1	0	0	0	14798	1232	43	3	2498	3	SMG7	1	183515162	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	6269815	183515162	65735459	14	19688											
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186948508	186948508	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PLA2G4A	NM_024420	exon17	c.A2022G	p.P674P	TGACCCAGAATCA	.	168	80	180	0	.	721	G	186948508	A	G	186948508	2	3	154	1	0	0	0	0	0	0	0	1	12001	175	7	2		2	PLA2G4A	1	186948508	Silent	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	3433346	186948508	62302113	15	19689											
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215408294	215408294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KCNK2	NM_001017425	exon7	c.C1087T	p.R363W	ATCAAGCGGAAGC	.	146	39	62	0	.	90	T	215408294	C	T	215408294	3	4	154	1	0	0	0	0	1	0	0	0	8066	759	27	1	1156	1	KCNK2	1	215408294	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	28459786	215408294	33842327	16	19690											
ADSS	159	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244582115	244582115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADSS	NM_001126	exon9	c.A892G	p.K298E	AAGCTTTCACAAC	.	329	35	238	1	.	229	C	244582115	T	C	244582115	3	2	154	1	0	0	0	0	1	0	0	0	347	1792	62	2	498	2	ADSS	1	244582115	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	29173821	244582115	4668506	17	19691											
PQLC3	130814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	11300640	11300640	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PQLC3	NM_152391	exon2	c.G192C	p.L64L	GCCGCTGACCTAC	.	134	7	212	0	.	90	C	11300640	G	C	11300640	2	2	154	1	0	0	0	0	0	0	0	1	12420	1277	45	4		4	PQLC3	2	11300640	Silent	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		11300640	231898733	18	19692											
ATL2	64225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	38525447	38525447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ATL2	NM_001135673	exon12	c.C1471A	p.L491M	CAGTCAGTCCTGA	.	59	5	73	0	.	228	T	38525447	G	T	38525447	3	4	154	1	0	0	0	0	1	0	0	0	1107	1020	36	3	400	3	ATL2	2	38525447	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	27224807	38525447	204673926	19	19693											
EPAS1	2034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	46611722	46611722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EPAS1	NM_001430	exon16	c.G2536T	p.V846L	TGTGAGGTGAACG	.	78	25	131	2	.	227	T	46611722	G	T	46611722	3	4	154	1	0	0	0	0	1	0	0	0	5150	1261	44	3	2598	3	EPAS1	2	46611722	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	8086275	46611722	196587651	20	19694											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97428070	97428070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CNNM4	NM_020184	exon1	c.A1334G	p.Y445C	GCTTCTATAACCA	.	198	79	266	0	.	154	G	97428070	A	G	97428070	3	3	154	1	0	0	0	0	1	0	0	0	3615	449	16	2	1336	2	CNNM4	2	97428070	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	50816348	97428070	145771303	21	19695											
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	160287506	160287506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BAZ2B	NM_013450	exon10	c.G2062C	p.G688R	AGTGACCTGTGAG	.	135	8	122	0	.	94	G	160287506	C	G	160287506	3	3	154	1	0	0	0	0	1	0	0	0	1332	681	24	4	4556	4	BAZ2B	2	160287506	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	62859436	160287506	82911867	22	19696											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179590290	179590290	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TTN	NM_001267550	exon71	c.20641delC	p.Q6881fs	TAGGCTGGGCGCC	.	41	11	59	0	.	636	-	179590290	G	-	179590290	7	5	154	1	0	1	0	1	0	0	0	0	16732	1357	47	0	84056	0	TTN	2	179590290	Frame_Shift_Del	DEL	G	TCGA-G3-A5SL-01A-11D-A27I-10	19302784	179590290	63609083	23	19697											
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220503556	220503556	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC4A3	NM_201574	exon19	c.C3069A	p.V1023V	CCTCGTCCTCATC	.	81	25	139	0	.	157	A	220503556	C	A	220503556	2	1	154	1	0	0	0	0	0	0	0	1	14655	842	30	3		3	SLC4A3	2	220503556	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	40913266	220503556	22695817	24	19698											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242430491	242430491	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FARP2	NM_014808	exon23	c.A2520G	p.K840K	GGAGAAAGAGAAG	.	243	79	442	1	.	93	G	242430491	A	G	242430491	2	3	154	1	0	0	0	0	0	0	0	1	5677	69	3	2		2	FARP2	2	242430491	Silent	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	21926935	242430491	768882	25	19699											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	439928	439928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CHL1	NM_006614	exon25	c.T3113C	p.I1038T	GGAAGATATCAGG	.	69	12	83	0	.	583	C	439928	T	C	439928	3	2	154	1	0	0	0	0	1	0	0	0	3349	1406	49	2	3203	2	CHL1	3	439928	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10		439928	197582502	26	19700											
NR2C2	7182	hgsc.bcm.edu;bcgsc.ca	37	3	15062430	15062430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NR2C2	NM_003298	exon6	c.A604G	p.K202E	GGCATGAAAATGG	.	77	4	68	0	.	226	G	15062430	A	G	15062430	3	3	154	1	0	0	0	0	1	0	0	0	10623	247	9	2	622	2	NR2C2	3	15062430	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	14622502	15062430	182960000	27	19701											
RBMS3	27303	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30032668	30032668	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RBMS3	NM_001003793	exon14	c.A1275G	p.E425E	CAACGAACATGCA	.	204	86	169	1	.	90	G	30032668	A	G	30032668	2	3	154	1	0	0	0	0	0	0	0	1	13150	40	2	2		2	RBMS3	3	30032668	Silent	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	14970238	30032668	167989762	28	19702											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	232	73	170	0	.	24361	G	41266098	A	G	41266098	3	3	154	1	0	0	0	0	1	0	0	0	4016	275	10	2	101	2	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	11233430	41266098	156756332	29	19703											
CYP8B1	1582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42916920	42916920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CYP8B1	NM_004391	exon1	c.A389T	p.H130L	CTCAGATGCTTGG	.	133	39	158	0	.	92	A	42916920	T	A	42916920	3	1	154	1	0	0	0	0	1	0	0	0	4198	1464	51	4	1120	4	CYP8B1	3	42916920	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	1650822	42916920	155105510	30	19704											
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	50251707	50251707	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC38A3	NM_006841	exon2	c.C75T	p.V25V	CCCGGTCATCACC	.	135	58	207	0	.	67	T	50251707	C	T	50251707	2	4	154	1	0	0	0	0	0	0	0	1	14605	813	29	3		3	SLC38A3	3	50251707	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	7334787	50251707	147770723	31	19705											
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148552327	148552327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CPB1	NM_001871	exon3	c.C190A	p.H64N	AAACCTCACAGTA	.	190	89	191	0	.	92	A	148552327	C	A	148552327	3	1	154	1	0	0	0	0	1	0	0	0	3796	826	29	3	200	3	CPB1	3	148552327	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	98300620	148552327	49470103	32	19706											
PEX5L	51555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179592187	179592187	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PEX5L	NM_016559	exon7	c.A654G	p.P218P	CAGTTCTGGTTGA	.	51	17	39	0	.	156	C	179592187	T	C	179592187	2	2	154	1	0	0	0	0	0	0	0	1	11749	1567	55	2		2	PEX5L	3	179592187	Silent	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	31039860	179592187	18430243	33	19707											
LGI2	55203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25005084	25005084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LGI2	NM_018176	exon8	c.T1627G	p.L543V	AACTTAAGTCAAC	.	46	15	77	0	.	90	C	25005084	A	C	25005084	3	2	154	1	0	0	0	0	1	0	0	0	8752	69	3	5	14	5	LGI2	4	25005084	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10		25005084	166149192	34	19708											
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	66280067	66280067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EPHA5	NM_004439	exon7	c.G1622A	p.R541Q	CGTGCTCGAATTT	.	140	54	96	1	.	1430	T	66280067	C	T	66280067	3	4	154	1	0	0	0	0	1	0	0	0	5170	884	31	1	1539	1	EPHA5	4	66280067	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	41274983	66280067	124874209	35	19709											
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	110442575	110442575	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SEC24B	NM_006323	exon14	c.2302-1G>A	.	TTCTCAGCTTATA	.	70	16	123	0	.	137	A	110442575	G	A	110442575	5	1	154	1	0	0	0	0	0	0	1	0	13995	985	34	3	2355	3	SEC24B	4	110442575	Splice_Site	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	44162508	110442575	80711701	36	19710											
ANKRD50	57182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125591958	125591958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANKRD50	NM_020337	exon4	c.G2474A	p.G825E	ACATTTCCTTGTG	.	277	52	143	2	.	90	T	125591958	C	T	125591958	3	4	154	1	0	0	0	0	1	0	0	0	677	855	30	3	1819	3	ANKRD50	4	125591958	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	15149383	125591958	65562318	37	19711											
EDNRA	1909	ucsc.edu;bcgsc.ca	37	4	148407017	148407017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EDNRA	NM_001166055	exon2	c.A184G	p.N62D	CCCAGCAATGGCT	.	289	121	259	2	.	586	G	148407017	A	G	148407017	3	3	154	1	0	0	0	0	1	0	0	0	4919	130	5	2	186	2	EDNRA	4	148407017	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	22815059	148407017	42747259	38	19712											
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155505929	155505929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FGA	NM_000508	exon6	c.A1948G	p.I650V	GCTTGATATTGAA	.	39	18	29	0	.	93	C	155505929	T	C	155505929	3	2	154	1	0	0	0	0	1	0	0	0	5830	1406	49	2	656	2	FGA	4	155505929	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	7098912	155505929	35648347	39	19713											
WDR17	116966	broad.mit.edu;ucsc.edu	37	4	177067183	177067183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	WDR17	NM_170710	exon13	c.C1639T	p.R547C	AATGTTCGTGTTT	.	93	16	75	2	.	95	T	177067183	C	T	177067183	3	4	154	1	0	0	0	0	1	0	0	0	17274	884	31	1	1685	1	WDR17	4	177067183	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	21561254	177067183	14087093	40	19714											
BASP1	10409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	17275846	17275846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BASP1	NM_006317	exon2	c.C521A	p.P174H	CAAAACCCGGCAG	.	35	16	52	0	.	90	A	17275846	C	A	17275846	3	1	154	1	0	0	0	0	1	0	0	0	1317	623	22	3	523	3	BASP1	5	17275846	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10		17275846	163639414	41	19715											
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34824058	34824058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RAI14	NM_001145525	exon17	c.C2120T	p.S707F	TGAAGTCTCAGTA	.	252	40	297	0	.	91	T	34824058	C	T	34824058	3	4	154	1	0	0	0	0	1	0	0	0	13008	913	32	3	2230	3	RAI14	5	34824058	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	17548212	34824058	146091202	42	19716											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	37017238	37017238	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NIPBL	NM_015384	exon24	c.G4894C	p.G1632R	GATCAAGGATCTA	.	169	13	206	0	.	293	C	37017238	G	C	37017238	3	2	154	1	0	0	0	0	1	0	0	0	10428	1001	35	4	4984	4	NIPBL	5	37017238	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	2193180	37017238	143898022	43	19717											
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	86672363	86672363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RASA1	NM_002890	exon16	c.A2165C	p.E722A	AAGAAGAGTACAG	.	94	9	55	0	.	661	C	86672363	A	C	86672363	3	2	154	1	0	0	0	0	1	0	0	0	13060	304	11	5	2239	5	RASA1	5	86672363	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	49655125	86672363	94242897	44	19718											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140572647	140572647	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PCDHB10	NM_018930	exon1	c.C522T	p.P174P	CAGCCCCAACTCT	.	186	67	323	0	.	92	T	140572647	C	T	140572647	2	4	154	1	0	0	0	0	0	0	0	1	11535	581	21	3		3	PCDHB10	5	140572647	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	53900284	140572647	40342613	45	19719											
KIAA0141	9812	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141313823	141313823	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA0141	NM_001142603	exon9	c.T916C	p.L306L	TATCAGTTGGCTG	.	134	47	196	2	.	91	C	141313823	T	C	141313823	2	2	154	1	0	0	0	0	0	0	0	1	8156	1722	60	2		2	KIAA0141	5	141313823	Silent	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	741176	141313823	39601437	46	19720											
DUSP22	56940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	348175	348175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DUSP22	NM_020185	exon6	c.G336C	p.E112D	CTGGGAGGATGCC	.	273	15	305	0	.	252	C	348175	G	C	348175	3	2	154	1	0	0	0	0	1	0	0	0	4821	991	35	4	358	4	DUSP22	6	348175	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		348175	170766892	47	19721											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32037394	32037394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TNXB	NM_019105	exon15	c.G5523T	p.K1841N	CAGCAGCTTGTAC	.	79	8	55	0	.	90	A	32037394	C	A	32037394	3	1	154	1	0	0	0	0	1	0	0	0	16343	796	28	3	9310	3	TNXB	6	32037394	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	31689219	32037394	139077673	48	19722											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32041646	32041646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TNXB	NM_019105	exon12	c.C4459A	p.P1487T	AGTTGGGGGTCAC	.	134	31	111	0	.	90	T	32041646	G	T	32041646	3	4	154	1	0	0	0	0	1	0	0	0	16343	1232	43	3	10386	3	TNXB	6	32041646	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	4252	32041646	139073421	49	19723											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51907882	51907882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PKHD1	NM_170724	exon27	c.G2872T	p.D958Y	GGGAGTCACCAGA	.	139	33	55	0	.	603	A	51907882	C	A	51907882	3	1	154	1	0	0	0	0	1	0	0	0	11971	826	29	3	9555	3	PKHD1	6	51907882	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	19866236	51907882	119207185	50	19724											
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	170112622	170112622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PHF10	NM_018288	exon8	c.G817T	p.E273X	GCAGCTCATCTGG	.	63	14	129	0	.	226	A	170112622	C	A	170112622	4	1	154	1	0	0	0	0	0	1	0	0	11821	835	29	3	699	3	PHF10	6	170112622	Nonsense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	118204740	170112622	1002445	51	19725											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	6631388	6631388	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C7orf26	NM_024067	exon2	c.C304T	p.Q102X	AGCCCTCAAGGGA	.	163	20	202	0	.	91	T	6631388	C	T	6631388	4	4	154	1	0	0	0	0	0	1	0	0	2381	827	29	3	310	3	C7orf26	7	6631388	Nonsense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10		6631388	152507275	52	19726											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21784074	21784074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DNAH11	.	.	.	.	GCTTCTCCTGAGT	.	77	15	77	0	.	146	T	21784074	C	T	21784074	3	4	154	1	0	0	0	0	1	0	0	0	4599	855	30	3	8393	3	DNAH11	7	21784074	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	15152686	21784074	137354589	53	19727											
CCDC129	223075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31683405	31683405	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_001257968	exon11	c.C2499A	p.I833I	CTGCATCTGCTGT	.	190	96	106	1	.	.	A	31683405	C	A	31683405	2	1	154	1	0	0	0	0	0	0	0	1	2764	903	32	3		3	CCDC129	7	31683405	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	9899331	31683405	127455258	54	19728											
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81372744	81372744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HGF	NM_000601	exon7	c.G790T	p.D264Y	GGCCATCGGGATT	.	181	23	85	0	.	516	A	81372744	C	A	81372744	3	1	154	1	0	0	0	0	1	0	0	0	7085	884	31	1	1456	1	HGF	7	81372744	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	49689339	81372744	77765919	55	19729											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82545309	82545309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PCLO	NM_014510	exon7	c.C11993T	p.A3998V	GAAACAGCAAATG	.	51	22	27	0	.	29	A	82545309	G	A	82545309	3	1	154	1	0	0	0	0	1	0	0	0	11583	971	34	3	3528	3	PCLO	7	82545309	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	1172565	82545309	76593354	56	19730											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103179563	103179563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RELN	NM_173054	exon45	c.A7142G	p.D2381G	GCGAAGTCTATCT	.	150	68	104	0	.	574	C	103179563	T	C	103179563	3	2	154	1	0	0	0	0	1	0	0	0	13220	1667	58	2	3324	2	RELN	7	103179563	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	20634254	103179563	55959100	57	19731											
NPBWR1	2831	broad.mit.edu;ucsc.edu	37	8	53853329	53853329	+	Missense_Mutation	SNP	A	A	T	rs141356626	alternate_allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NPBWR1	NM_005285	exon1	c.A862T	p.I288F	ATCGCTATCTCCT	.	269	40	123	2	A|1.000;G|0.000	155	T	53853329	A	T	53853329	3	4	154	1	0	0	0	0	1	0	0	0	10568	449	16	4	864	4	NPBWR1	8	53853329	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10		53853329	92510693	58	19732											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	55534004	55534004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RP1	NM_006269	exon2	c.A478G	p.R160G	GTCTTCAGGAATG	.	243	37	97	0	.	102	G	55534004	A	G	55534004	3	3	154	1	0	0	0	0	1	0	0	0	13532	179	7	2	480	2	RP1	8	55534004	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	1680675	55534004	90830018	59	19733											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	94817076	94817076	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TMEM67	NM_153704	exon23	c.A2409G	p.E803E	TATGGAAGAAATG	.	120	7	49	0	.	92	G	94817076	A	G	94817076	2	3	154	1	0	0	0	0	0	0	0	1	16193	69	3	2		2	TMEM67	8	94817076	Silent	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	39283072	94817076	51546946	60	19734											
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95523540	95523540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1429	NM_015496	exon13	c.A3263G	p.N1088S	GTATTATTGGCCA	.	180	23	58	0	.	92	C	95523540	T	C	95523540	3	2	154	1	0	0	0	0	1	0	0	0	8231	1493	52	2	2277	2	KIAA1429	8	95523540	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	706464	95523540	50840482	61	19735											
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95543221	95543221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1429	NM_015496	exon6	c.G577A	p.D193N	CATCATCATCAGG	.	116	82	47	0	.	92	T	95543221	C	T	95543221	3	4	154	1	0	0	0	0	1	0	0	0	8231	826	29	3	4991	3	KIAA1429	8	95543221	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	19681	95543221	50820801	62	19736											
UQCRB	7381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97245396	97245396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UQCRB	NM_001254752	exon2	c.T79G	p.F27V	TATTGAATCCTGC	.	145	14	40	0	.	91	C	97245396	A	C	97245396	3	2	154	1	0	0	0	0	1	0	0	0	17015	101	4	5	268	5	UQCRB	8	97245396	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	1702175	97245396	49118626	63	19737											
KCNQ3	3786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133153487	133153487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KCNQ3	NM_004519	exon10	c.G1354A	p.A452T	CTATGGCATCTAC	.	231	58	131	1	.	138	T	133153487	C	T	133153487	3	4	154	1	0	0	0	0	1	0	0	0	8084	710	25	3	1288	3	KCNQ3	8	133153487	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	35908091	133153487	13210535	64	19738											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141468638	141468638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TRAPPC9	NM_031466	exon1	c.G26A	p.R9H	GGCGCGCGGTCTT	.	59	11	24	0	.	228	T	141468638	C	T	141468638	3	4	154	1	0	0	0	0	1	0	0	0	16462	768	27	1	3806	1	TRAPPC9	8	141468638	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	8315151	141468638	4895384	65	19739											
BAI1	575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	143623422	143623422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BAI1	NM_001702	exon27	c.T3827C	p.F1276S	CCAATTTCAACAG	.	138	13	85	0	.	1129	C	143623422	T	C	143623422	3	2	154	1	0	0	0	0	1	0	0	0	1298	1783	62	2	3933	2	BAI1	8	143623422	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	2154784	143623422	2740600	66	19740											
CYP11B2	1585	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	143996507	143996507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CYP11B2	NM_000498	exon3	c.C550A	p.L184M	GGGTCAGGCTCCC	.	531	56	284	1	.	90	T	143996507	G	T	143996507	3	4	154	1	0	0	0	0	1	0	0	0	4146	991	35	3	989	3	CYP11B2	8	143996507	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	373085	143996507	2367515	67	19741											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35809218	35809218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NPR2	NM_003995	exon21	c.G3052A	p.E1018K	CAGCTAGAGCTTC	.	49	18	48	0	.	335	A	35809218	G	A	35809218	3	1	154	1	0	0	0	0	1	0	0	0	10595	943	33	3	3134	3	NPR2	9	35809218	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		35809218	105404213	68	19742											
HIATL1	84641	broad.mit.edu;bcgsc.ca	37	9	97216242	97216242	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HIATL1	NM_032558	exon9	c.G918A	p.T306T	GCAGACGGCCTTT	.	84	28	83	2	.	92	A	97216242	G	A	97216242	2	1	154	1	0	0	0	0	0	0	0	1	7098	1103	39	1		1	HIATL1	9	97216242	Silent	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	61407024	97216242	43997189	69	19743											
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	120476662	120476662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TLR4	NM_138554	exon3	c.G2256C	p.E752D	ATATGAGATTGCT	.	73	5	53	0	.	577	C	120476662	G	C	120476662	3	2	154	1	0	0	0	0	1	0	0	0	15950	933	33	4	2266	4	TLR4	9	120476662	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	23260420	120476662	20736769	70	19744											
GOLGA1	2800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127685398	127685398	+	Missense_Mutation	SNP	C	C	A	rs138655913	alternate_allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	GOLGA1	NM_002077	exon8	c.G537T	p.Q179H	TAGTTCCTGCTGC	.	33	15	27	0	C|1.000;T|0.000	91	A	127685398	C	A	127685398	3	1	154	1	0	0	0	0	1	0	0	0	6551	680	24	3	1830	3	GOLGA1	9	127685398	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	7208736	127685398	13528033	71	19745											
PPP2R4	5524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131898785	131898785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PPP2R4	NM_178001	exon8	c.A701G	p.Y234C	AAACATACAGGAT	.	134	51	179	0	.	660	G	131898785	A	G	131898785	3	3	154	1	0	0	0	0	1	0	0	0	12391	391	14	2	731	2	PPP2R4	9	131898785	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	4213387	131898785	9314646	72	19746											
UAP1L1	91373	broad.mit.edu;bcgsc.ca	37	9	139973543	139973543	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UAP1L1	NM_207309	exon4	c.G786A	p.L262L	GCGGCTGGCGGAC	.	108	5	183	0	.	91	A	139973543	G	A	139973543	2	1	154	1	0	0	0	0	0	0	0	1	16823	1335	47	3		3	UAP1L1	9	139973543	Silent	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	8074758	139973543	1239888	73	19747											
FRMD4A	55691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13708157	13708157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FRMD4A	NM_018027	exon18	c.A1543C	p.N515H	TCTCATTGATTGC	.	64	28	81	0	.	229	G	13708157	T	G	13708157	3	3	154	1	0	0	0	0	1	0	0	0	6051	1812	63	5	1604	5	FRMD4A	10	13708157	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10		13708157	121826590	74	19748											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu	37	10	15559170	15559170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ITGA8	NM_003638	exon30	c.C3179G	p.T1060S	TCAGGGGTCTTGT	.	36	5	25	0	.	230	C	15559170	G	C	15559170	3	2	154	1	0	0	0	0	1	0	0	0	7882	1261	44	4	16	4	ITGA8	10	15559170	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	1851013	15559170	119975577	75	19749											
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30747090	30747090	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAP3K8	NM_001244134	exon6	c.C951A	p.L317L	CACGCTCATCCAC	.	150	54	147	0	.	981	A	30747090	C	A	30747090	2	1	154	1	0	0	0	0	0	0	0	1	9256	813	29	3		3	MAP3K8	10	30747090	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	15187920	30747090	104787657	76	19750											
ZEB1	6935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31809696	31809696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZEB1	NM_001174096	exon7	c.G1436A	p.S479N	ACTACAGTCTTGA	.	67	36	66	1	.	518	A	31809696	G	A	31809696	3	1	154	1	0	0	0	0	1	0	0	0	17620	1029	36	3	1473	3	ZEB1	10	31809696	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	1062606	31809696	103725051	77	19751											
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	54031194	54031194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PRKG1	NM_006258	exon11	c.C1258T	p.H420Y	CAGGAGCACATCC	.	100	32	42	0	.	523	T	54031194	C	T	54031194	3	4	154	1	0	0	0	0	1	0	0	0	12522	710	25	3	1570	3	PRKG1	10	54031194	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	22221498	54031194	81503553	78	19752											
SIRT3	23410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	230535	230535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SIRT3	NM_012239	exon4	c.T724G	p.S242A	GCTTTGAGGCAGG	.	111	37	165	0	.	650	C	230535	A	C	230535	3	2	154	1	0	0	0	0	1	0	0	0	14339	304	11	5	491	5	SIRT3	11	230535	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10		230535	134775981	79	19753											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3797196	3797196	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NUP98	NM_016320	exon5	c.T411A	p.S137S	AGGATTAGAGGTG	.	163	37	200	0	.	703	T	3797196	A	T	3797196	2	4	154	1	0	0	0	0	0	0	0	1	10773	407	15	4		4	NUP98	11	3797196	Silent	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	3566661	3797196	131209320	80	19754											
HBE1	3046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5291042	5291042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HBE1	NM_005330	exon1	c.G79C	p.E27Q	AGGCTTCACCTCC	.	90	10	58	0	.	90	G	5291042	C	G	5291042	3	3	154	1	0	0	0	0	1	0	0	0	6980	835	29	4	376	4	HBE1	11	5291042	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	1493846	5291042	129715474	81	19755											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21555918	21555918	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NELL1	NM_006157	exon16	c.1646-2A>G	.	TGAGGCAGATATT	.	103	29	66	0	.	155	G	21555918	A	G	21555918	5	3	154	1	0	0	0	0	0	0	1	0	10333	202	7	2	1706	2	NELL1	11	21555918	Splice_Site	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	16264876	21555918	113450598	82	19756											
MAP3K11	4296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65380716	65380716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAP3K11	NM_002419	exon1	c.T512A	p.L171Q	TGTGCCAGCATGG	.	85	31	149	0	.	980	T	65380716	A	T	65380716	3	4	154	1	0	0	0	0	1	0	0	0	9245	188	7	4	2071	4	MAP3K11	11	65380716	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	43824798	65380716	69625800	83	19757											
LRP5	4041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68181295	68181295	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LRP5	NM_002335	exon12	c.T2642G	p.L881R	GCACCCTCATCCA	.	83	29	137	1	.	661	G	68181295	T	G	68181295	3	3	154	1	0	0	0	0	1	0	0	0	8960	1551	54	5	2688	5	LRP5	11	68181295	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	2800579	68181295	66825221	84	19758											
LRP5	4041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68216342	68216342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LRP5	NM_002335	exon23	c.A4652T	p.D1551V	ACAGCGACTACAG	.	62	24	92	0	.	661	T	68216342	A	T	68216342	3	4	154	1	0	0	0	0	1	0	0	0	8960	275	10	4	4742	4	LRP5	11	68216342	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	35047	68216342	66790174	85	19759											
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103814257	103814257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PDGFD	NM_025208	exon5	c.G695T	p.W232L	TCTTGCCATGACT	.	119	27	82	0	.	723	A	103814257	C	A	103814257	3	1	154	1	0	0	0	0	1	0	0	0	11660	595	21	3	429	3	PDGFD	11	103814257	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	35597915	103814257	31192259	86	19760											
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	110034060	110034060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZC3H12C	NM_033390	exon5	c.A1211G	p.K404R	TGAGGAAGAAACC	.	73	5	90	0	.	68	G	110034060	A	G	110034060	3	3	154	1	0	0	0	0	1	0	0	0	17560	72	3	2	1229	2	ZC3H12C	11	110034060	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	6219803	110034060	24972456	87	19761											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117321317	117321317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DSCAML1	NM_020693	exon20	c.G3836A	p.G1279E	ATCACCCCGTTGG	.	47	9	69	0	.	159	T	117321317	C	T	117321317	3	4	154	1	0	0	0	0	1	0	0	0	4769	623	22	3	2561	3	DSCAML1	11	117321317	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	7287257	117321317	17685199	88	19762											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737496	4737496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AKAP3	NM_006422	exon4	c.C572T	p.A191V	TCTGGGGCAGCAT	.	94	37	102	0	.	292	A	4737496	G	A	4737496	3	1	154	1	0	0	0	0	1	0	0	0	452	1203	42	3	1997	3	AKAP3	12	4737496	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		4737496	129114399	89	19763											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18691110	18691110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PIK3C2G	NM_004570	exon24	c.T3221G	p.F1074C	TCATTTTTACTTC	.	70	26	25	0	.	1312	G	18691110	T	G	18691110	3	3	154	1	0	0	0	0	1	0	0	0	11911	1841	64	5	3311	5	PIK3C2G	12	18691110	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	13953614	18691110	115160785	90	19764											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	46245723	46245723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ARID2	NM_152641	exon15	c.C3817T	p.R1273X	TGCCGACGAGGAG	.	67	17	64	0	.	100	T	46245723	C	T	46245723	4	4	154	1	0	0	0	0	0	1	0	0	915	528	19	1	3875	1	ARID2	12	46245723	Nonsense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	27554613	46245723	87606172	91	19765											
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48391816	48391816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL2A1	NM_001844	exon5	c.A374G	p.Q125R	CTTACCTGAGGCC	.	100	39	156	0	.	92	C	48391816	T	C	48391816	3	2	154	1	0	0	0	0	1	0	0	0	3687	1594	55	2	4289	2	COL2A1	12	48391816	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	2146093	48391816	85460079	92	19766											
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52979943	52979943	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT72	NM_001146225	exon9	c.1359delC	p.S453fs	ATTGGTGCTGCTG	.	82	28	68	0	.	96	-	52979943	G	-	52979943	7	5	154	1	0	1	0	1	0	0	0	0	8485	1310	46	0	180	0	KRT72	12	52979943	Frame_Shift_Del	DEL	G	TCGA-G3-A5SL-01A-11D-A27I-10	4588127	52979943	80871952	93	19767											
ANAPC7	51434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110819712	110819712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANAPC7	NM_016238	exon8	c.A1079G	p.Y360C	CCTAAATAGAGGG	.	47	18	64	0	.	226	C	110819712	T	C	110819712	3	2	154	1	0	0	0	0	1	0	0	0	606	1406	49	2	740	2	ANAPC7	12	110819712	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	57839769	110819712	23032183	94	19768											
VSIG10	54621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118504496	118504496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_019086	exon9	c.A1571G	p.D524G	CTGCTGTCATCTG	.	185	71	209	2	.	.	C	118504496	T	C	118504496	3	2	154	1	0	0	0	0	1	0	0	0	17220	1667	58	2	55	2	VSIG10	12	118504496	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	7684784	118504496	15347399	95	19769											
XPO4	64328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21361634	21361634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	XPO4	NM_022459	exon21	c.C3151G	p.R1051G	AGTGCCGTGTTGC	.	92	31	139	0	.	272	C	21361634	G	C	21361634	3	2	154	1	0	0	0	0	1	0	0	0	17443	1144	40	4	316	4	XPO4	13	21361634	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		21361634	93808244	96	19770											
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23530298	23530298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ACIN1	NM_014977	exon18	c.A3694G	p.S1232G	CCTGGCTGTCAGT	.	93	40	156	0	.	156	C	23530298	T	C	23530298	3	2	154	1	0	0	0	0	1	0	0	0	142	1580	55	2	339	2	ACIN1	14	23530298	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10		23530298	83819242	97	19771											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23898464	23898464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MYH7	NM_000257	exon13	c.G1231A	p.V411I	TGGTGACGTACTC	.	169	62	215	0	.	94	T	23898464	C	T	23898464	3	4	154	1	0	0	0	0	1	0	0	0	10039	536	19	1	4688	1	MYH7	14	23898464	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	368166	23898464	83451076	98	19772											
TINF2	26277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24709083	24709083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TINF2	NM_001099274	exon9	c.T1276G	p.C426G	ATTCACAGAGAGT	.	171	69	228	0	.	227	C	24709083	A	C	24709083	3	2	154	1	0	0	0	0	1	0	0	0	15920	188	7	5	83	5	TINF2	14	24709083	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	810619	24709083	82640457	99	19773											
NFATC4	4776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24839776	24839776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NFATC4	NM_001198967	exon3	c.T1361C	p.I454T	CCCGGATTGGGGG	.	58	20	70	1	.	92	C	24839776	T	C	24839776	3	2	154	1	0	0	0	0	1	0	0	0	10365	1493	52	2	1371	2	NFATC4	14	24839776	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	130693	24839776	82509764	100	19774											
SGPP1	81537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64165361	64165361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SGPP1	NM_030791	exon2	c.G700A	p.G234R	TCAGTCCATATAT	.	94	24	158	0	.	90	T	64165361	C	T	64165361	3	4	154	1	0	0	0	0	1	0	0	0	14219	603	21	3	633	3	SGPP1	14	64165361	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	39325585	64165361	43184179	101	19775											
RDH12	145226	bcgsc.ca;mdanderson.org	37	14	68195937	68195937	+	Missense_Mutation	SNP	C	C	G	rs104894476	bycluster	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RDH12	NM_152443	exon8	c.C688G	p.P230A	GTGCACCCAGGCG	.	37	16	37	1	.	91	G	68195937	C	G	68195937	3	3	154	1	0	0	0	0	1	0	0	0	13191	623	22	4	710	4	RDH12	14	68195937	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	4030576	68195937	39153603	102	19776											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68265045	68265045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZFYVE26	NM_015346	exon11	c.T1934A	p.M645K	CTTGGCATTGTAT	.	121	54	163	0	.	162	T	68265045	A	T	68265045	3	4	154	1	0	0	0	0	1	0	0	0	17665	217	8	4	5813	4	ZFYVE26	14	68265045	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	69108	68265045	39084495	103	19777											
MPI	4351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75182913	75182914	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MPI	NM_002435	exon2	c.62_63insG	p.M21fs	GGAAGATGGGTTC	.	80	21	112	0	.	92	G	75182914	-	G	75182913	7	5	154	1	0	1	1	0	0	0	0	0	9729	1464	51	0	68	0	MPI	15	75182913	Frame_Shift_Ins	INS	-	TCGA-G3-A5SL-01A-11D-A27I-10		75182913	27348479	104	19778											
BTBD1	53339	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	83698992	83698992	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BTBD1	NM_025238	exon5	c.C951A	p.Y317X	GTCAATGTATTCA	.	132	10	140	0	.	91	T	83698992	G	T	83698992	4	4	154	1	0	0	0	0	0	1	0	0	1537	1372	48	3	513	3	BTBD1	15	83698992	Nonsense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	8516079	83698992	18832400	105	19779											
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50745410	50745410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NOD2	NM_022162	exon4	c.T1588C	p.S530P	CCAGACTCAGCTT	.	47	17	80	0	.	231	C	50745410	T	C	50745410	3	2	154	1	0	0	0	0	1	0	0	0	10517	1551	54	2	1602	2	NOD2	16	50745410	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10		50745410	39609343	106	19780											
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81097428	81097428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C16orf46	NM_001100873	exon2	c.C133T	p.L45F	CATCGAGAAGACA	.	68	29	94	0	.	90	A	81097428	G	A	81097428	3	1	154	1	0	0	0	0	1	0	0	0	1815	942	33	3	1090	3	C16orf46	16	81097428	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	30352018	81097428	9257325	107	19781											
SRR	63826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2227109	2227109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SRR	NM_021947	exon8	c.C965G	p.S322C	CCTCCTCCATAAC	.	118	15	135	1	.	90	G	2227109	C	G	2227109	3	3	154	1	0	0	0	0	1	0	0	0	15165	855	30	4	991	4	SRR	17	2227109	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10		2227109	78968101	108	19782											
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6328940	6328940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AIPL1	NM_014336	exon6	c.C995G	p.T332R	GGCTGCGTGGCAC	.	26	11	26	0	.	90	C	6328940	G	C	6328940	3	2	154	1	0	0	0	0	1	0	0	0	436	1145	40	4	163	4	AIPL1	17	6328940	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	4101831	6328940	74866270	109	19783											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19445791	19445791	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC47A1	NM_018242	exon2	c.T221G	p.V74G	ATGCAGTCACGCT	.	94	13	148	0	.	90	G	19445791	T	G	19445791	3	3	154	1	0	0	0	0	1	0	0	0	14647	1667	58	5	227	5	SLC47A1	17	19445791	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	13116851	19445791	61749419	110	19784											
UTP6	55813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	30190389	30190389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UTP6	NM_018428	exon19	c.G1783C	p.G595R	AATGGCCAGTCTG	.	101	6	132	0	.	91	G	30190389	C	G	30190389	3	3	154	1	0	0	0	0	1	0	0	0	17099	594	21	4	14	4	UTP6	17	30190389	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	10744598	30190389	51004821	111	19785											
GFAP	2670	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42988813	42988813	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	GFAP	NM_001131019	exon6	c.G918A	p.L306L	CCTCTCCAGGGAC	.	18	8	27	0	.	516	T	42988813	C	T	42988813	2	4	154	1	0	0	0	0	0	0	0	1	6337	581	21	3		3	GFAP	17	42988813	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	12798424	42988813	38206397	112	19786											
COL1A1	1277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48264129	48264129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL1A1	NM_000088	exon48	c.T3686A	p.L1229H	ACCTCGAGGTCAC	.	87	41	137	0	.	986	T	48264129	A	T	48264129	3	4	154	1	0	0	0	0	1	0	0	0	3677	304	11	4	724	4	COL1A1	17	48264129	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	5275316	48264129	32931081	113	19787											
DDX42	11325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61864631	61864631	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DDX42	NM_203499	exon2	c.221+1G>-	.	AAATGCGTAAGTG	.	95	25	117	0	.	230	-	61864631	G	-	61864631	8	5	154	1	0	1	0	1	0	0	1	0	4362	1159	40	0	224	0	DDX42	17	61864631	Splice_Site	DEL	G	TCGA-G3-A5SL-01A-11D-A27I-10	13600502	61864631	19330579	114	19788											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80040959	80040959	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FASN	NM_004104	exon33	c.G5598A	p.K1866K	GGCCCCCTTCAGC	.	69	35	80	0	.	90	T	80040959	C	T	80040959	2	4	154	1	0	0	0	0	0	0	0	1	5683	680	24	3		3	FASN	17	80040959	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	18176328	80040959	1154251	115	19789											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21441703	21441703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LAMA3	NM_001127717	exon35	c.C4516A	p.L1506I	GCGGATCTCCAGG	.	136	58	125	0	.	100	A	21441703	C	A	21441703	3	1	154	1	0	0	0	0	1	0	0	0	8607	913	32	3	4654	3	LAMA3	18	21441703	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10		21441703	56635545	116	19790											
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12886218	12886218	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HOOK2	NM_001100176	exon2	c.45+1G>-	.	GACCTACCCAGGT	.	96	26	132	0	.	92	-	12886218	C	-	12886218	8	5	154	1	0	1	0	1	0	0	1	0	7283	521	18	0	2205	0	HOOK2	19	12886218	Splice_Site	DEL	C	TCGA-G3-A5SL-01A-11D-A27I-10		12886218	46242765	117	19791											
KLHL26	55295	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18779891	18779891	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KLHL26	NM_018316	exon3	c.T1684G	p.Y562D	AAGATCTACATCG	.	64	26	123	2	.	91	G	18779891	T	G	18779891	3	3	154	1	0	0	0	0	1	0	0	0	8381	1522	53	5	1694	5	KLHL26	19	18779891	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	5893673	18779891	40349092	118	19792											
APLP1	333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36363455	36363455	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	APLP1	NM_005166	exon7	c.C921T	p.H307H	TGAGCACGAGGGG	.	126	50	160	0	.	92	T	36363455	C	T	36363455	2	4	154	1	0	0	0	0	0	0	0	1	778	535	19	1		1	APLP1	19	36363455	Silent	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	17583564	36363455	22765528	119	19793											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57036179	57036179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF471	NM_020813	exon5	c.A743G	p.H248R	GGCAACACCTTGC	.	80	34	79	0	.	154	G	57036179	A	G	57036179	3	3	154	1	0	0	0	0	1	0	0	0	17927	159	6	2	757	2	ZNF471	19	57036179	Missense_Mutation	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	20672724	57036179	2092804	120	19794											
ZNF17	7565	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57931234	57931234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF17	NM_006959	exon3	c.T374G	p.L125R	AGAAGCTCACCAG	.	162	10	187	0	.	90	G	57931234	T	G	57931234	3	3	154	1	0	0	0	0	1	0	0	0	17740	1551	54	5	384	5	ZNF17	19	57931234	Missense_Mutation	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10	895055	57931234	1197749	121	19795											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3002002	3002002	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PTPRA	NM_002836	exon18	c.G1089A	p.G363G	CTATGGGAATATT	.	223	78	264	0	.	227	A	3002002	G	A	3002002	2	1	154	1	0	0	0	0	0	0	0	1	12795	1161	41	3		3	PTPRA	20	3002002	Silent	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		3002002	60023518	122	19796											
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35169914	35169914	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ITSN1	NM_003024	exon18	c.2182+2T>C	.	TGCAGGTATTAGA	.	149	57	185	1	.	94	C	35169914	T	C	35169914	5	2	154	1	0	0	0	0	0	0	1	0	7926	1652	57	2	2250	2	ITSN1	21	35169914	Splice_Site	SNP	T	TCGA-G3-A5SL-01A-11D-A27I-10		35169914	12959981	123	19797											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43221871	43221871	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PRDM15	NM_022115	exon31	c.C4053T	p.T1351T	ACCCAGGGTCACC	.	182	31	271	0	.	90	A	43221871	G	A	43221871	2	1	154	1	0	0	0	0	0	0	0	1	12456	1219	43	3		3	PRDM15	21	43221871	Silent	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	8051957	43221871	4908024	124	19798											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46888317	46888317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL18A1	NM_030582	exon2	c.C808T	p.R270C	TTCTTCCGTGACT	.	126	38	226	0	.	90	T	46888317	C	T	46888317	3	4	154	1	0	0	0	0	1	0	0	0	3675	652	23	1	1633	1	COL18A1	21	46888317	Missense_Mutation	SNP	C	TCGA-G3-A5SL-01A-11D-A27I-10	3666446	46888317	1241578	125	19799											
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24837383	24837383	+	Missense_Mutation	SNP	G	G	A	rs201827862		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADORA2A	NM_000675	exon3	c.G1165A	p.E389K	AGCCATGAGCTCA	.	160	59	234	0	.	90	A	24837383	G	A	24837383	3	1	154	1	0	0	0	0	1	0	0	0	327	1291	45	3	1171	3	ADORA2A	22	24837383	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		24837383	26467183	126	19800											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu	37	22	37888678	37888678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CARD10	NM_014550	exon17	c.C2608T	p.R870W	CCAGCCGGGAGCT	.	119	5	154	0	.	662	A	37888678	G	A	37888678	3	1	154	1	0	0	0	0	1	0	0	0	2644	1115	39	1	506	1	CARD10	22	37888678	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	13051295	37888678	13415888	127	19801											
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44893045	44893045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LDOC1L	NM_032287	exon2	c.C392T	p.P131L	TCACCCGGGAAGC	.	55	30	64	0	.	69	A	44893045	G	A	44893045	3	1	154	1	0	0	0	0	1	0	0	0	8710	1116	39	1	331	1	LDOC1L	22	44893045	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10	7004367	44893045	6411521	128	19802											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50886721	50886721	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SBF1	NM_002972	exon38	c.T5304A	p.A1768A	GCGGGCAGCCTGA	.	90	61	161	1	.	90	T	50886721	A	T	50886721	2	4	154	1	0	0	0	0	0	0	0	1	13858	175	7	4		4	SBF1	22	50886721	Silent	SNP	A	TCGA-G3-A5SL-01A-11D-A27I-10	5993676	50886721	417845	129	19803											
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75003638	75003638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAGEE2	NM_138703	exon1	c.C1249T	p.R417C	TGACACGGTTGCC	.	91	62	96	0	.	132	A	75003638	G	A	75003638	3	1	154	1	0	0	0	0	1	0	0	0	9186	1116	39	1	326	1	MAGEE2	23	75003638	Missense_Mutation	SNP	G	TCGA-G3-A5SL-01A-11D-A27I-10		75003638	80266922	130	19804											
SESN2	83667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28598805	28598805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SESN2	NM_031459	exon4	c.G365A	p.R122H	CCGCCCGCCATCA	.	51	10	68	0	.	230	A	28598805	G	A	28598805	3	1	155	1	0	0	0	0	1	0	0	0	14125	1087	38	1	379	1	SESN2	1	28598805	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10		28598805	220651816	1	19805											
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117644020	117644020	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTF2	NM_003594	exon23	c.A3363G	p.T1121T	GGGAACAGTAGAA	.	24	8	21	0	.	91	G	117644020	A	G	117644020	2	3	155	1	0	0	0	0	0	0	0	1	16716	175	7	2		2	TTF2	1	117644020	Silent	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	89045215	117644020	131606601	2	19806											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207644362	207644362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CR2	NM_001006658	exon8	c.G1423A	p.G475R	GCTACAGGAAGGC	.	238	27	192	0	.	232	A	207644362	G	A	207644362	3	1	155	1	0	0	0	0	1	0	0	0	3842	1001	35	3	1453	3	CR2	1	207644362	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	90000342	207644362	41606259	3	19807											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245849809	245849809	+	Missense_Mutation	SNP	C	C	T	rs202113373		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF26B	NM_018012	exon12	c.C3524T	p.T1175M	TGGTGACGGTGCA	.	177	17	134	0	.	25	T	245849809	C	T	245849809	3	4	155	1	0	0	0	0	1	0	0	0	8295	536	19	1	3570	1	KIF26B	1	245849809	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	38205447	245849809	3400812	4	19808											
OR2T10	127069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756351	248756351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR2T10	NM_001004693	exon1	c.C719T	p.T240I	GAGCAGGTGGTGA	.	312	40	214	1	.	69	A	248756351	G	A	248756351	3	1	155	1	0	0	0	0	1	0	0	0	11017	1261	44	3	222	3	OR2T10	1	248756351	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	2906542	248756351	494270	5	19809											
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72692418	72692418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EXOC6B	NM_015189	exon18	c.G1851T	p.K617N	GTCAATCTTCTGG	.	136	57	149	0	.	68	A	72692418	C	A	72692418	3	1	155	1	0	0	0	0	1	0	0	0	5309	912	32	3	604	3	EXOC6B	2	72692418	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		72692418	170506955	6	19810											
RGPD4	285190	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	108488192	108488192	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.G3732C	p.G1244G	CACTGGGCCCACA	.	508	80	493	0	.	2	C	108488192	G	C	108488192	2	2	155	1	0	0	0	0	0	0	0	1	13288	1190	42	4		4	RGPD4	2	108488192	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	35795774	108488192	134711181	7	19811	120	3									
RGPD4	285190	ucsc.edu;bcgsc.ca	37	2	108488196	108488196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.A3736C	p.T1246P	GGGCCCACATTAG	.	527	86	519	1	.	2	C	108488196	A	C	108488196	3	2	155	1	0	0	0	0	1	0	0	0	13288	159	6	5	3814	5	RGPD4	2	108488196	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	4	108488196	134711177	8	19812	120	3									
RGPD4	285190	ucsc.edu;bcgsc.ca	37	2	108488198	108488198	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.A3738C	p.T1246T	GCCCACATTAGAA	.	542	85	539	1	.	2	C	108488198	A	C	108488198	2	2	155	1	0	0	0	0	0	0	0	1	13288	204	8	5		5	RGPD4	2	108488198	Silent	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	2	108488198	134711175	9	19813	120	3									
DAPL1	92196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	159651944	159651944	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DAPL1	NM_001017920	exon1	c.58+2T>A	.	TGCAGGTAGGCTG	.	237	32	271	0	.	22	A	159651944	T	A	159651944	5	1	155	1	0	0	0	0	0	0	1	0	4238	1652	57	4	62	4	DAPL1	2	159651944	Splice_Site	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	51163746	159651944	83547429	10	19814											
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160664981	160664981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LY75	NM_002349	exon33	c.G4801A	p.G1601R	ATAATCCAAGCCA	.	104	20	94	0	.	90	T	160664981	C	T	160664981	3	4	155	1	0	0	0	0	1	0	0	0	9099	603	21	3	379	3	LY75	2	160664981	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	1013037	160664981	82534392	11	19815											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560835	179560835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTN	NM_001267550	exon114	c.G30964A	p.D10322N	GTTCGTCATAAGG	.	116	38	140	0	.	636	T	179560835	C	T	179560835	3	4	155	1	0	0	0	0	1	0	0	0	16732	826	29	3	73561	3	TTN	2	179560835	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	18895854	179560835	63638538	12	19816											
CHRND	1144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	233390976	233390976	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHRND	NM_000751	exon1	c.T51C	p.C17C	GGTGTGTGGTAAG	.	215	24	197	0	.	155	C	233390976	T	C	233390976	2	2	155	1	0	0	0	0	0	0	0	1	3394	1710	59	2		2	CHRND	2	233390976	Silent	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	53830141	233390976	9808397	13	19817											
UGT1A8	54576	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	234526864	234526864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	UGT1A8	NM_019076	exon1	c.G511T	p.G171X	GCCAGGGGAATAG	.	107	14	110	1	.	27	T	234526864	G	T	234526864	4	4	155	1	0	0	0	0	0	1	0	0	16948	1233	43	3	513	3	UGT1A8	2	234526864	Nonsense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	1135888	234526864	8672509	14	19818											
ESPNL	339768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	239039657	239039657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ESPNL	NM_194312	exon9	c.G2302T	p.A768S	CTAGGAGCCCGCC	.	10	5	18	0	.	69	T	239039657	G	T	239039657	3	4	155	1	0	0	0	0	1	0	0	0	5255	971	34	3	2336	3	ESPNL	2	239039657	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	4512793	239039657	4159716	15	19819											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	403447	403447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHL1	NM_001253388	exon11	c.T1372C	p.F458L	AGTGCTTTCTTAC	.	126	59	126	0	.	583	C	403447	T	C	403447	3	2	155	1	0	0	0	0	1	0	0	0	3349	1841	64	2	1414	2	CHL1	3	403447	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10		403447	197618983	16	19820											
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14862981	14862981	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FGD5	NM_152536	exon1	c.G2403T	p.T801T	GTTCACGAAGCTG	.	80	32	81	0	.	231	T	14862981	G	T	14862981	2	4	155	1	0	0	0	0	0	0	0	1	5836	1045	37	1		1	FGD5	3	14862981	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	14459534	14862981	183159449	17	19821											
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38357904	38357904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC22A14	NM_004803	exon9	c.C1622A	p.P541H	TCCTGCCCATCTT	.	125	25	87	0	.	90	A	38357904	C	A	38357904	3	1	155	1	0	0	0	0	1	0	0	0	14445	623	22	3	1656	3	SLC22A14	3	38357904	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	23494923	38357904	159664526	18	19822											
KIF15	56992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44843455	44843455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF15	NM_020242	exon13	c.C1498A	p.L500M	CAAACTCTGCGAG	.	107	23	88	0	.	91	A	44843455	C	A	44843455	3	1	155	1	0	0	0	0	1	0	0	0	8277	912	32	3	1548	3	KIF15	3	44843455	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	6485551	44843455	153178975	19	19823											
OR5K4	403278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98073262	98073262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR5K4	NM_001005517	exon1	c.T565A	p.C189S	CTCTCCTGTACAG	.	94	21	79	0	.	68	A	98073262	T	A	98073262	3	1	155	1	0	0	0	0	1	0	0	0	11169	1580	55	4	567	4	OR5K4	3	98073262	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	53229807	98073262	99949168	20	19824											
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107491987	107491987	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	BBX	NM_001142568	exon11	c.C1419T	p.C473C	GACTTGCAAAAAG	.	265	101	255	0	.	94	T	107491987	C	T	107491987	2	4	155	1	0	0	0	0	0	0	0	1	1343	718	25	3		3	BBX	3	107491987	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	9418725	107491987	90530443	21	19825											
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140123517	140123517	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CLSTN2	NM_022131	exon4	c.G546A	p.E182E	GGTGGAGGCCATT	.	235	84	260	0	.	157	A	140123517	G	A	140123517	2	1	155	1	0	0	0	0	0	0	0	1	3562	991	35	3		3	CLSTN2	3	140123517	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	32631530	140123517	57898913	22	19826											
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	168810745	168810745	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MECOM	NM_001105077	exon15	c.2795+1G>T	.	GCTTTACCTCTCC	.	78	13	43	0	.	853	A	168810745	C	A	168810745	5	1	155	1	0	0	0	0	0	0	1	0	9422	521	18	3	570	3	MECOM	3	168810745	Splice_Site	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	28687228	168810745	29211685	23	19827											
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8295868	8295868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTRA3	NM_053044	exon6	c.G991T	p.A331S	TCCTTTGCCATCC	.	139	17	121	0	.	91	T	8295868	G	T	8295868	3	4	155	1	0	0	0	0	1	0	0	0	7455	1319	46	3	1013	3	HTRA3	4	8295868	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10		8295868	182858408	24	19828	121	2									
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8295870	8295870	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTRA3	NM_053044	exon6	c.C993T	p.A331A	CTTTGCCATCCCC	.	136	17	121	0	.	91	T	8295870	C	T	8295870	2	4	155	1	0	0	0	0	0	0	0	1	7455	581	21	3		3	HTRA3	4	8295870	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	2	8295870	182858406	25	19829	121	2									
PCDH7	5099	hgsc.bcm.edu;mdanderson.org	37	4	30726251	30726251	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDH7	NM_032456	exon1	c.C3207T	p.P1069P	ATATCCCAGGGAG	.	39	12	49	0	.	229	T	30726251	C	T	30726251	2	4	155	1	0	0	0	0	0	0	0	1	11516	581	21	3		3	PCDH7	4	30726251	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	22430381	30726251	160428025	26	19830											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40103840	40103840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	N4BP2	NM_018177	exon4	c.T375G	p.S125R	AGAGAGTGAAGAT	.	98	38	117	0	.	602	G	40103840	T	G	40103840	3	3	155	1	0	0	0	0	1	0	0	0	10110	1693	59	5	381	5	N4BP2	4	40103840	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	9377589	40103840	151050436	27	19831											
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46060284	46060284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GABRG1	NM_173536	exon7	c.G866T	p.W289L	GACACCCAAGAAA	.	185	39	196	0	.	92	A	46060284	C	A	46060284	3	1	155	1	0	0	0	0	1	0	0	0	6171	595	21	3	543	3	GABRG1	4	46060284	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	5956444	46060284	145093992	28	19832											
PDCL2	132954	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56458269	56458269	+	Splice_Site	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_152401	exon2	c.6+2T>G	.	ACCCTCACCTGCA	.	144	18	146	2	.	.	C	56458269	A	C	56458269	5	2	155	1	0	0	0	0	0	0	1	0	11627	173	6	5	741	5	PDCL2	4	56458269	Splice_Site	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	10397985	56458269	134696007	29	19833											
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122836092	122836092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TRPC3	NM_001130698	exon4	c.C1184T	p.A395V	GGATGAGCCACAA	.	69	13	104	0	.	92	A	122836092	G	A	122836092	3	1	155	1	0	0	0	0	1	0	0	0	16576	971	34	3	1617	3	TRPC3	4	122836092	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	66377823	122836092	68318184	30	19834											
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244795	1244795	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC6A18	NM_182632	exon11	c.C1569T	p.V523V	GGTGGTCAGTCCC	.	142	33	118	0	.	91	T	1244795	C	T	1244795	2	4	155	1	0	0	0	0	0	0	0	1	14681	813	29	3		3	SLC6A18	5	1244795	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		1244795	179670465	31	19835											
TRIO	7204	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14374421	14374421	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TRIO	NM_007118	exon19	c.G3300A	p.T1100T	GGTGACGCACATC	.	149	41	130	2	.	562	A	14374421	G	A	14374421	2	1	155	1	0	0	0	0	0	0	0	1	16549	1074	38	1		1	TRIO	5	14374421	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	13129626	14374421	166540839	32	19836											
FBXO4	26272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41927119	41927119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FBXO4	NM_033484	exon2	c.A194T	p.D65V	AGATTGATGTACA	.	67	10	70	0	.	227	T	41927119	A	T	41927119	3	4	155	1	0	0	0	0	1	0	0	0	5748	333	12	4	200	4	FBXO4	5	41927119	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	27552698	41927119	138988141	33	19837											
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74646693	74646693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HMGCR	NM_001130996	exon9	c.C860A	p.S287Y	ATACTTCTAAGGT	.	64	18	88	0	.	227	A	74646693	C	A	74646693	3	1	155	1	0	0	0	0	1	0	0	0	7231	913	32	3	890	3	HMGCR	5	74646693	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	32719574	74646693	106268567	34	19838											
FAM81B	153643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94749799	94749799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM81B	NM_152548	exon4	c.G442A	p.G148S	ACCCATGGCTTTC	.	174	33	165	2	.	92	A	94749799	G	A	94749799	3	1	155	1	0	0	0	0	1	0	0	0	5629	1348	47	3	456	3	FAM81B	5	94749799	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	20103106	94749799	86165461	35	19839											
CSNK1G3	1456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122940520	122940520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CSNK1G3	NM_001044723	exon11	c.A1285G	p.T429A	GATGAAACCAAGT	.	266	54	290	1	.	358	G	122940520	A	G	122940520	3	3	155	1	0	0	0	0	1	0	0	0	3956	43	2	2	1327	2	CSNK1G3	5	122940520	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	28190721	122940520	57974740	36	19840											
BRD8	10902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137501703	137501703	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	BRD8,NS,carcinoma,-2	BRD8	NM_006696	exon12	c.C1311T	p.I437I	AGAATTGATGATC	.	61	18	79	0	.	91	A	137501703	G	A	137501703	2	1	155	1	0	0	0	0	0	0	0	1	1506	1280	45	3		3	BRD8	5	137501703	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	14561183	137501703	43413557	37	19841											
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558833	140558833	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDHB8	NM_019120	exon1	c.A1218G	p.T406T	ACTAACAGAGACA	.	508	98	533	0	.	131	G	140558833	A	G	140558833	2	3	155	1	0	0	0	0	0	0	0	1	11548	175	7	2		2	PCDHB8	5	140558833	Silent	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	3057130	140558833	40356427	38	19842											
PCDHGC5	56097	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	140871340	140871340	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDHGC5	NM_032407	exon1	c.T2533A	p.L845M	AAGGGATTGAACT	.	119	11	144	0	.	25	A	140871340	T	A	140871340	3	1	155	1	0	0	0	0	1	0	0	0	11571	1490	52	4	2535	4	PCDHGC5	5	140871340	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	312507	140871340	40043920	39	19843											
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30627550	30627550	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DHX16	NM_003587	exon11	c.A1817T	p.Q606L	GGGGGCTGGGTCA	.	72	10	109	0	.	228	A	30627550	T	A	30627550	3	1	155	1	0	0	0	0	1	0	0	0	4502	1580	55	4	1348	4	DHX16	6	30627550	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10		30627550	140487517	40	19844											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43220563	43220563	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTBK1	NM_032538	exon3	c.G195A	p.E65E	GGTGGAGTCAGCC	.	62	13	77	0	.	353	A	43220563	G	A	43220563	2	1	155	1	0	0	0	0	0	0	0	1	16673	1020	36	3		3	TTBK1	6	43220563	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	12593013	43220563	127894504	41	19845											
EEF1A1	1915	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	74229722	74229722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EEF1A1	NM_001402	exon2	c.A28G	p.I10V	CGACAATGTTGAT	.	16	7	15	0	.	226	C	74229722	T	C	74229722	3	2	155	1	0	0	0	0	1	0	0	0	4923	1464	51	2	1388	2	EEF1A1	6	74229722	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	31009159	74229722	96885345	42	19846											
MANEA	79694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96034461	96034461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MANEA	NM_024641	exon2	c.A146G	p.H49R	AACTTCATCAACG	.	34	11	46	0	.	155	G	96034461	A	G	96034461	3	3	155	1	0	0	0	0	1	0	0	0	9221	217	8	2	148	2	MANEA	6	96034461	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	21804739	96034461	75080606	43	19847											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152768757	152768757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SYNE1	NM_033071	exon29	c.G3526C	p.E1176Q	TGATCTCCTGAAA	.	36	6	52	0	.	607	G	152768757	C	G	152768757	3	3	155	1	0	0	0	0	1	0	0	0	15442	869	30	4	23433	4	SYNE1	6	152768757	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	56734296	152768757	18346310	44	19848											
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159655441	159655441	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FNDC1	NM_032532	exon11	c.C3897A	p.R1299R	CTTGCGCCAGAGG	.	154	15	189	0	.	138	A	159655441	C	A	159655441	2	1	155	1	0	0	0	0	0	0	0	1	5968	726	26	3		3	FNDC1	6	159655441	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	6886684	159655441	11459626	45	19849											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82791801	82791801	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCLO	NM_014510	exon1	c.G108T	p.A36A	CGGGATCGCGGTG	.	75	42	110	0	.	29	A	82791801	C	A	82791801	2	1	155	1	0	0	0	0	0	0	0	1	11583	871	31	1		1	PCLO	7	82791801	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		82791801	76346862	46	19850											
COG5	10466	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	106921825	106921827	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	COG5	NM_006348	exon14	c.1586_1588del	p.529_530del	TATCAACAGCAGC	.	114	19	98	0	.	93	-	106921827	CAG	-	106921825	7	5	155	1	0	1	0	1	0	0	0	0	3661	478	17	0	1034	0	COG5	7	106921825	In_Frame_Del	DEL	CAG	TCGA-G3-A5SM-01A-12D-A28X-10	24130024	106921825	52216838	47	19851											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107799966	107799966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	NRCAM	NM_001037132	exon29	c.C3619T	p.H1207Y	CAGCATGGGCATC	.	90	38	89	0	.	156	A	107799966	G	A	107799966	3	1	155	1	0	0	0	0	1	0	0	0	10644	1348	47	3	333	3	NRCAM	7	107799966	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	878141	107799966	51338697	48	19852											
DOCK4	9732	broad.mit.edu;bcgsc.ca	37	7	111387428	111387428	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DOCK4	NM_014705	exon42	c.T4461C	p.I1487I	CTGACTAATCAGA	.	60	33	70	2	.	26	G	111387428	A	G	111387428	2	3	155	1	0	0	0	0	0	0	0	1	4689	358	13	2		2	DOCK4	7	111387428	Silent	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	3587462	111387428	47751235	49	19853											
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150501448	150501448	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM176A	NM_018487	exon6	c.556-2A>G	.	GTCCCCAGGCCTT	.	112	21	104	0	.	92	G	150501448	A	G	150501448	5	3	155	1	0	0	0	0	0	0	1	0	16089	202	7	2	572	2	TMEM176A	7	150501448	Splice_Site	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	39114020	150501448	8637215	50	19854											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151860411	151860411	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLL3	NM_170606	exon43	c.G10251A	p.Q3417Q	TACCTCCTGCATG	.	230	87	200	0	.	1398	T	151860411	C	T	151860411	2	4	155	1	0	0	0	0	0	0	0	1	9622	680	24	3		3	MLL3	7	151860411	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	1358963	151860411	7278252	51	19855											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10468548	10468548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RP1L1	NM_178857	exon4	c.G3060A	p.Q1020Q	TGGGTCCTGGCCG	.	85	40	104	0	.	139	T	10468548	C	T	10468548	2	4	155	1	0	0	0	0	0	0	0	1	13533	680	24	3		3	RP1L1	8	10468548	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		10468548	135895474	52	19856											
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	16921654	16921654	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EFHA2	NM_181723	exon2	c.443delG	p.R148fs	AGAGGCGATTTCG	.	77	14	96	0	.	91	-	16921654	G	-	16921654	7	5	155	1	0	1	0	1	0	0	0	0	4944	1058	37	0	449	0	EFHA2	8	16921654	Frame_Shift_Del	DEL	G	TCGA-G3-A5SM-01A-12D-A28X-10	6453106	16921654	129442368	53	19857											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61764754	61764754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHD7	NM_017780	exon29	c.G5842A	p.V1948M	GAGGAAGTGAGAG	.	127	53	112	0	.	141	A	61764754	G	A	61764754	3	1	155	1	0	0	0	0	1	0	0	0	3330	1029	36	3	5952	3	CHD7	8	61764754	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	44843100	61764754	84599268	54	19858											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110447476	110447476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PKHD1L1	NM_177531	exon29	c.T3398G	p.V1133G	TTGCTGTGTCCAT	.	120	6	115	0	.	145	G	110447476	T	G	110447476	3	3	155	1	0	0	0	0	1	0	0	0	11972	1696	59	5	3512	5	PKHD1L1	8	110447476	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	48682722	110447476	35916546	55	19859											
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144899577	144899577	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_078480	exon10	c.A1068T	p.P356P	CAGTGCTGGGGAC	.	187	84	151	0	.	.	A	144899577	T	A	144899577	2	1	155	1	0	0	0	0	0	0	0	1	12824	1567	55	4		4	PUF60	8	144899577	Silent	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	34452101	144899577	1464445	56	19860											
PARP10	84875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145059302	145059302	+	Missense_Mutation	SNP	C	C	A	rs199611396	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PARP10	NM_032789	exon5	c.G868T	p.A290S	TCCCTGCACCCTG	.	81	13	75	0	.	526	A	145059302	C	A	145059302	3	1	155	1	0	0	0	0	1	0	0	0	11455	710	25	3	2237	3	PARP10	8	145059302	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	159725	145059302	1304720	57	19861											
DNAI1	27019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34514529	34514529	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DNAI1	NM_012144	exon17	c.C1707T	p.D569D	CTGGGACCACACC	.	90	14	91	0	.	90	T	34514529	C	T	34514529	2	4	155	1	0	0	0	0	0	0	0	1	4609	506	18	3		3	DNAI1	9	34514529	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		34514529	106698902	58	19862											
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	82320836	82320837	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	p.LV254FL	CAACTTGGTGGTT	.	166	52	326	0	.	.	TT	82320837	GG	TT	82320836	3	4	155	1	0	0	0	0	1	0	0	0	15938	1339	47	3	800	3	TLE4	9	82320836	Missense_Mutation	DNP	GG	TCGA-G3-A5SM-01A-12D-A28X-10	47806307	82320836	58892595	59	19863											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107607783	107607783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ABCA1	NM_005502	exon8	c.A788G	p.H263R	AGACTATGCAGCA	.	79	21	87	0	.	1016	C	107607783	T	C	107607783	3	2	155	1	0	0	0	0	1	0	0	0	28	1464	51	2	6169	2	ABCA1	9	107607783	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	25286947	107607783	33605648	60	19864											
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140093940	140093940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TPRN	NM_001128228	exon1	c.C1224A	p.D408E	AGCCCGGTCAGCG	.	75	33	102	0	.	90	T	140093940	G	T	140093940	3	4	155	1	0	0	0	0	1	0	0	0	16418	1252	44	3	1007	3	TPRN	9	140093940	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	32486157	140093940	1119491	61	19865											
VIM	7431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	17271663	17271663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	VIM	NM_003380	exon2	c.A242T	p.Q81L	TCCTGCAGGACTC	.	98	34	107	0	.	291	T	17271663	A	T	17271663	3	4	155	1	0	0	0	0	1	0	0	0	17163	188	7	4	244	4	VIM	10	17271663	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10		17271663	118263084	62	19866											
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18282170	18282170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC39A12	NM_001145195	exon9	c.G1483A	p.E495K	AACTCTGAATTAA	.	178	46	157	1	.	154	A	18282170	G	A	18282170	3	1	155	1	0	0	0	0	1	0	0	0	14615	1291	45	3	1513	3	SLC39A12	10	18282170	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	1010507	18282170	117252577	63	19867											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26409644	26409644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYO3A	NM_017433	exon18	c.A1816T	p.N606Y	ATCTTGAATGTTG	.	82	27	113	0	.	1007	T	26409644	A	T	26409644	3	4	155	1	0	0	0	0	1	0	0	0	10076	246	9	4	1878	4	MYO3A	10	26409644	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	8127474	26409644	109125103	64	19868											
FRMPD2	143162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49392901	49392901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FRMPD2	NM_001018071	exon19	c.T2383C	p.Y795H	CTGAATACTCTCC	.	145	20	139	1	.	153	G	49392901	A	G	49392901	3	3	155	1	0	0	0	0	1	0	0	0	6058	391	14	2	1590	2	FRMPD2	10	49392901	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	22983257	49392901	86141846	65	19869											
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52575807	52575807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	A1CF	NM_001198820	exon10	c.A1124G	p.H375R	CTGAGATGTCCTT	.	177	50	205	0	.	68	C	52575807	T	C	52575807	3	2	155	1	0	0	0	0	1	0	0	0	2	1464	51	2	704	2	A1CF	10	52575807	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	3182906	52575807	82958940	66	19870											
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63212687	63212687	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM26	NM_178505	exon1	c.G153A	p.A51A	GGTGAGCGCAGTC	.	212	27	207	0	.	90	T	63212687	C	T	63212687	2	4	155	1	0	0	0	0	0	0	0	1	16148	755	27	1		1	TMEM26	10	63212687	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	10636880	63212687	72322060	67	19871											
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644911	70644911	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	STOX1	NM_152709	exon3	c.C1359T	p.P453P	ACACCCCAAGCTC	.	112	16	101	0	.	92	T	70644911	C	T	70644911	2	4	155	1	0	0	0	0	0	0	0	1	15318	581	21	3		3	STOX1	10	70644911	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	7432224	70644911	64889836	68	19872											
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71007177	71007177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HKDC1	NM_025130	exon9	c.G1093A	p.E365K	CCGTCTGAGGCTG	.	190	51	177	0	.	95	A	71007177	G	A	71007177	3	1	155	1	0	0	0	0	1	0	0	0	7193	1291	45	3	1127	3	HKDC1	10	71007177	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	362266	71007177	64527570	69	19873											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108367021	108367021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SORCS1	NM_001206572	exon23	c.C3068T	p.A1023V	AGCACCGCCACCA	.	78	24	90	0	.	153	A	108367021	G	A	108367021	3	1	155	1	0	0	0	0	1	0	0	0	14930	1087	38	1	688	1	SORCS1	10	108367021	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	37359844	108367021	27167726	70	19874											
HMX2	3167	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124908050	124908050	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HMX2	NM_005519	exon1	c.G156A	p.E52E	CTCGGAGGAGGAG	.	36	6	79	0	.	90	A	124908050	G	A	124908050	2	1	155	1	0	0	0	0	0	0	0	1	7247	991	35	3		3	HMX2	10	124908050	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	16541029	124908050	10626697	71	19875											
MYOD1	4654	ucsc.edu;bcgsc.ca	37	11	17742518	17742518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYOD1	NM_002478	exon2	c.G700A	p.A234T	AACGAGGCGCCCA	.	145	70	142	2	.	154	A	17742518	G	A	17742518	3	1	155	1	0	0	0	0	1	0	0	0	10088	1203	42	3	706	3	MYOD1	11	17742518	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10		17742518	117263998	72	19876											
CKAP5	9793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46817173	46817173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CKAP5	NM_001008938	exon13	c.G1621A	p.G541R	GAGGTCCTGGTTT	.	129	13	138	1	.	92	T	46817173	C	T	46817173	3	4	155	1	0	0	0	0	1	0	0	0	3445	690	24	3	4605	3	CKAP5	11	46817173	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	29074655	46817173	88189343	73	19877											
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135547	55135547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR4A15	NM_001005275	exon1	c.A188T	p.Y63F	TAATCTACATGGT	.	123	17	108	0	.	70	T	55135547	A	T	55135547	3	4	155	1	0	0	0	0	1	0	0	0	11040	391	14	4	190	4	OR4A15	11	55135547	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	8318374	55135547	79870969	74	19878											
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371775	55371775	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR4C11	NM_001004700	exon1	c.G75T	p.V25V	TACAAACACTATT	.	84	15	95	0	.	69	A	55371775	C	A	55371775	2	1	155	1	0	0	0	0	0	0	0	1	11045	465	17	3		3	OR4C11	11	55371775	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	236228	55371775	79634741	75	19879											
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56114194	56114194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR8K1	NM_001002907	exon1	c.T680G	p.I227S	TGTTTATTCTAGT	.	105	51	96	0	.	70	G	56114194	T	G	56114194	3	3	155	1	0	0	0	0	1	0	0	0	11243	1493	52	5	682	5	OR8K1	11	56114194	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	742419	56114194	78892322	76	19880											
ACTN3	89	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66330589	66330589	+	RNA	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ACTN3	.	.	.	.	CTACAAGGGATCC	.	104	18	113	0	.	90	A	66330589	G	A	66330589	1	1	155	0	1	0	0	0	0	0	0	0	206	991	35	3		3	ACTN3	11	66330589	RNA	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	10216395	66330589	68675927	77	19881											
P4HA3	283208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74013475	74013475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	P4HA3	NM_182904	exon3	c.A506G	p.D169G	TACAGGTCAGTGA	.	123	22	79	1	.	69	C	74013475	T	C	74013475	3	2	155	1	0	0	0	0	1	0	0	0	11358	1667	58	2	1172	2	P4HA3	11	74013475	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	7682886	74013475	60993041	78	19882											
TSKU	25987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76507685	76507685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TSKU	NM_015516	exon2	c.C1025A	p.T342N	TAGACACCCGGGA	.	38	11	55	0	.	90	A	76507685	C	A	76507685	3	1	155	1	0	0	0	0	1	0	0	0	16624	507	18	3	1027	3	TSKU	11	76507685	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	2494210	76507685	58498831	79	19883											
CAPN5	726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76834775	76834775	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CAPN5	NM_004055	exon13	c.G1782A	p.Q594Q	GGGCCAGGTGCAC	.	144	29	136	0	.	90	A	76834775	G	A	76834775	2	1	155	1	0	0	0	0	0	0	0	1	2629	991	35	3		3	CAPN5	11	76834775	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	327090	76834775	58171741	80	19884											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	117342745	117342745	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DSCAML1	NM_020693	exon15	c.G2972A	p.W991X	AAGTCCCAGGAAT	.	178	12	163	0	.	159	T	117342745	C	T	117342745	4	4	155	1	0	0	0	0	0	1	0	0	4769	595	21	3	3445	3	DSCAML1	11	117342745	Nonsense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	40507970	117342745	17663771	81	19885											
HYOU1	10525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118924950	118924950	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HYOU1	NM_001130991	exon9	c.679-2A>G	.	ATATTCTGTAGAG	.	79	15	86	0	.	90	C	118924950	T	C	118924950	5	2	155	1	0	0	0	0	0	0	1	0	7470	1594	55	2	2398	2	HYOU1	11	118924950	Splice_Site	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	1582205	118924950	16081566	82	19886											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2774038	2774038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CACNA1C	NM_199460	exon37	c.C4424T	p.P1475L	GCATGCCAGGCAA	.	77	30	69	0	.	34	T	2774038	C	T	2774038	3	4	155	1	0	0	0	0	1	0	0	0	2540	594	21	3	4744	3	CACNA1C	12	2774038	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		2774038	131077857	83	19887											
SCNN1A	6337	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6457245	6457245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SCNN1A	NM_001159576	exon12	c.G1981A	p.A661T	CCTGAGCACCCCT	.	135	63	159	1	.	90	T	6457245	C	T	6457245	3	4	155	1	0	0	0	0	1	0	0	0	13927	710	25	3	209	3	SCNN1A	12	6457245	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	3683207	6457245	127394650	84	19888											
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	24048842	24048842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SOX5	NM_006940	exon2	c.T155G	p.L52R	AAGGGAAGGTGAA	.	120	37	133	0	.	655	C	24048842	A	C	24048842	3	2	155	1	0	0	0	0	1	0	0	0	14954	72	3	5	2202	5	SOX5	12	24048842	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	17591597	24048842	109803053	85	19889	122	2									
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	24048849	24048849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SOX5	NM_006940	exon2	c.T148G	p.F50V	GGTGAAAGGCTGG	.	118	33	132	0	.	655	C	24048849	A	C	24048849	3	2	155	1	0	0	0	0	1	0	0	0	14954	72	3	5	2209	5	SOX5	12	24048849	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	7	24048849	109803046	86	19890	122	2									
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53041619	53041619	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRT2	NM_000423	exon6	c.T1143C	p.T381T	CCCGACAGTCACC	.	82	21	91	0	.	92	G	53041619	A	G	53041619	2	3	155	1	0	0	0	0	0	0	0	1	8457	175	7	2		2	KRT2	12	53041619	Silent	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	28992770	53041619	80810276	87	19891											
TENC1	23371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53448150	53448150	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TENC1	NM_015319	exon7	c.C477G	p.P159P	GCGGCCCGATGAA	.	48	4	144	0	.	92	G	53448150	C	G	53448150	2	3	155	1	0	0	0	0	0	0	0	1	15755	639	23	4		4	TENC1	12	53448150	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	406531	53448150	80403745	88	19892											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56092544	56092544	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITGA7	NM_001144996	exon6	c.G960C	p.L320L	GGAGGTCAGGCGC	.	152	26	175	0	.	229	G	56092544	C	G	56092544	2	3	155	1	0	0	0	0	0	0	0	1	7881	813	29	4		4	ITGA7	12	56092544	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	2644394	56092544	77759351	89	19893											
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56638565	56638565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ANKRD52	NM_173595	exon24	c.G2593A	p.A865T	AGGCAGCGGCGTG	.	59	8	73	0	.	70	T	56638565	C	T	56638565	3	4	155	1	0	0	0	0	1	0	0	0	678	768	27	1	657	1	ANKRD52	12	56638565	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	546021	56638565	77213330	90	19894											
B4GALNT1	2583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58020643	58020643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	B4GALNT1	NM_001478	exon11	c.G1486A	p.D496N	CTCCGGCATCCCT	.	121	28	156	0	.	514	T	58020643	C	T	58020643	3	4	155	1	0	0	0	0	1	0	0	0	1266	710	25	3	119	3	B4GALNT1	12	58020643	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	1382078	58020643	75831252	91	19895											
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64813854	64813854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	XPOT	NM_007235	exon7	c.C494T	p.A165V	AGGAGGCTCGTAG	.	42	5	53	0	.	652	T	64813854	C	T	64813854	3	4	155	1	0	0	0	0	1	0	0	0	17447	797	28	3	516	3	XPOT	12	64813854	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	6793211	64813854	69038041	92	19896											
DYRK2	8445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	68051874	68051874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DYRK2	NM_006482	exon3	c.G1187A	p.G396E	TCCTTGGGGCCAG	.	113	23	107	1	.	861	A	68051874	G	A	68051874	3	1	155	1	0	0	0	0	1	0	0	0	4856	1232	43	3	1197	3	DYRK2	12	68051874	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	3238020	68051874	65800021	93	19897											
FAM71C	196472	hgsc.bcm.edu;bcgsc.ca	37	12	100042218	100042218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.C266T	p.A89V	TGCTGGCCCGACC	.	122	18	119	0	.	90	T	100042218	C	T	100042218	3	4	155	1	0	0	0	0	1	0	0	0	5609	739	26	3	268	3	FAM71C	12	100042218	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	31990344	100042218	33809677	94	19898	123	3									
FAM71C	196472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	100042220	100042221	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.268_269del	p.90_90del	CTGGCCCGACCAG	.	120	18	116	0	.	90	-	100042221	CG	-	100042220	7	5	155	1	0	1	0	1	0	0	0	0	5609	644	23	0	270	0	FAM71C	12	100042220	Frame_Shift_Del	DEL	CG	TCGA-G3-A5SM-01A-12D-A28X-10	2	100042220	33809675	95	19899	123	3									
FAM71C	196472	hgsc.bcm.edu;bcgsc.ca	37	12	100042223	100042223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.C271T	p.P91S	GCCCGACCAGCTG	.	120	19	111	0	.	90	T	100042223	C	T	100042223	3	4	155	1	0	0	0	0	1	0	0	0	5609	507	18	3	273	3	FAM71C	12	100042223	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	3	100042223	33809672	96	19900	123	3									
ALDH2	217	broad.mit.edu;bcgsc.ca	37	12	112220988	112220988	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ALDH2	NM_000690	exon3	c.C246T	p.A82A	GAAGGCCGCCCGG	.	50	18	44	1	.	228	T	112220988	C	T	112220988	2	4	155	1	0	0	0	0	0	0	0	1	496	639	23	1		1	ALDH2	12	112220988	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	12178765	112220988	21630907	97	19901											
DIS3	22894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73336102	73336102	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DIS3	NM_014953	exon17	c.A2301C	p.L767F	AGACGCTAAGCCA	.	61	18	93	0	.	90	G	73336102	T	G	73336102	3	3	155	1	0	0	0	0	1	0	0	0	4535	1519	53	5	595	5	DIS3	13	73336102	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10		73336102	41833776	98	19902											
RNASE2	6036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21423958	21423958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RNASE2	NM_002934	exon2	c.A28G	p.I10V	TCCCAAATTTGTC	.	142	33	138	0	.	91	G	21423958	A	G	21423958	3	3	155	1	0	0	0	0	1	0	0	0	13404	101	4	2	30	2	RNASE2	14	21423958	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10		21423958	85925582	99	19903											
LTB4R	1241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24785243	24785243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LTB4R	NM_181657	exon2	c.G386T	p.R129L	AGCTACGCACCAA	.	74	12	68	0	.	522	T	24785243	G	T	24785243	3	4	155	1	0	0	0	0	1	0	0	0	9071	1087	38	1	388	1	LTB4R	14	24785243	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	3361285	24785243	82564297	100	19904											
MLH3	27030	hgsc.bcm.edu;bcgsc.ca	37	14	75505047	75505047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLH3	NM_014381	exon6	c.G3639T	p.E1213D	ACCTGCCTCGCCA	.	65	4	64	0	.	228	A	75505047	C	A	75505047	3	1	155	1	0	0	0	0	1	0	0	0	9618	680	24	3	754	3	MLH3	14	75505047	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	50719804	75505047	31844493	101	19905											
TTLL5	23093	broad.mit.edu;bcgsc.ca	37	14	76147887	76147887	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTLL5	NM_015072	exon4	c.182-1G>T	.	TCTTTAGAACGTT	.	47	4	56	0	.	92	T	76147887	G	T	76147887	5	4	155	1	0	0	0	0	0	0	1	0	16727	956	33	3	191	3	TTLL5	14	76147887	Splice_Site	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	642840	76147887	31201653	102	19906											
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	93542960	93542960	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITPK1	NM_001142593	exon3	c.C100T	p.R34X	TCCCTCGCTTCCT	.	164	55	167	0	.	115	A	93542960	G	A	93542960	4	1	155	1	0	0	0	0	0	1	0	0	7916	1095	38	1	1228	1	ITPK1	14	93542960	Nonsense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	17395073	93542960	13806580	103	19907											
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104641634	104641634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF26A	NM_015656	exon12	c.C2509T	p.R837C	CACTTCCGCTGCA	.	18	8	77	0	.	24	T	104641634	C	T	104641634	3	4	155	1	0	0	0	0	1	0	0	0	8294	652	23	1	2555	1	KIF26A	14	104641634	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	11098674	104641634	2707906	104	19908											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105420945	105420945	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	AHNAK2	NM_138420	exon7	c.G843A	p.S281S	CTCTGACGAGCTG	.	48	28	74	0	.	47	T	105420945	C	T	105420945	2	4	155	1	0	0	0	0	0	0	0	1	415	523	19	1		1	AHNAK2	14	105420945	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	779311	105420945	1928595	105	19909											
MKRN3	7681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23811328	23811328	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MKRN3	NM_005664	exon1	c.G399A	p.S133S	CGTTTCGCCGCCT	.	51	22	75	1	.	1011	A	23811328	G	A	23811328	2	1	155	1	0	0	0	0	0	0	0	1	9608	1074	38	1		1	MKRN3	15	23811328	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10		23811328	78720064	106	19910											
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42454640	42454641	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	VPS39	NM_015289	exon22	c.2215_2216insC	p.S739fs	GAATGCTGGGGGG	.	103	35	135	0	.	229	G	42454641	-	G	42454640	7	5	155	1	0	1	1	0	0	0	0	0	17206	1580	55	0	428	0	VPS39	15	42454640	Frame_Shift_Ins	INS	-	TCGA-G3-A5SM-01A-12D-A28X-10	18643312	42454640	60076752	107	19911											
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73617654	73617654	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HCN4	NM_005477	exon5	c.C1722T	p.S574S	GGGCTCGCTTAGC	.	113	76	160	0	.	96	A	73617654	G	A	73617654	2	1	155	1	0	0	0	0	0	0	0	1	6999	1078	38	1		1	HCN4	15	73617654	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	31163014	73617654	28913738	108	19912											
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	314814	314814	+	Silent	SNP	C	C	A	rs140101617	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITFG3	NM_032039	exon13	c.C1452A	p.V484V	AGCCGTCCTGTTT	.	48	12	58	0	C|0.999;T|0.000	90	A	314814	C	A	314814	2	1	155	1	0	0	0	0	0	0	0	1	7871	842	30	3		3	ITFG3	16	314814	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		314814	90039939	109	19913											
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1535964	1535964	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PTX4	NM_001013658	exon3	c.C1398T	p.C466C	GCAGGTGCAGTTG	.	66	11	58	0	.	90	A	1535964	G	A	1535964	2	1	155	1	0	0	0	0	0	0	0	1	12823	1311	46	3		3	PTX4	16	1535964	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	1221150	1535964	88818789	110	19914											
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2257268	2257268	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLST8	NM_001199174	exon6	c.G495T	p.L165L	GCAGCTGATCCCT	.	220	87	180	0	.	392	T	2257268	G	T	2257268	2	4	155	1	0	0	0	0	0	0	0	1	9634	1277	45	3		3	MLST8	16	2257268	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	721304	2257268	88097485	111	19915											
NMRAL1	57407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4519432	4519432	+	Silent	SNP	C	C	T	rs11557237		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	NMRAL1	NM_020677	exon3	c.G75A	p.L25L	ATCTTCCAGGAGT	.	81	36	73	0	.	91	T	4519432	C	T	4519432	2	4	155	1	0	0	0	0	0	0	0	1	10501	581	21	3		3	NMRAL1	16	4519432	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	2262164	4519432	85835321	112	19916											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	1630783	1630783	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	WDR81	NM_001163809	exon1	c.C2530T	p.Q844X	CTGGACCAACTGT	.	66	26	109	0	.	91	T	1630783	C	T	1630783	4	4	155	1	0	0	0	0	0	1	0	0	17327	595	21	3	2594	3	WDR81	17	1630783	Nonsense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		1630783	79564427	113	19917											
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2076069	2076069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SMG6	NM_017575	exon13	c.G3240C	p.K1080N	CGGGTCCTTGTAC	.	127	57	134	0	.	228	G	2076069	C	G	2076069	3	3	155	1	0	0	0	0	1	0	0	0	14797	680	24	4	1047	4	SMG6	17	2076069	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	445286	2076069	79119141	114	19918											
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6381970	6381970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PITPNM3	NM_031220	exon7	c.C674G	p.S225C	GGGGAGGAGATGG	.	81	36	114	0	.	228	C	6381970	G	C	6381970	3	2	155	1	0	0	0	0	1	0	0	0	11952	1174	41	4	2306	4	PITPNM3	17	6381970	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	4305901	6381970	74813240	115	19919											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7574035	7574035	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	TP53,NS,haematopoietic_neoplasm,0	TP53	NM_000546	exon11	c.994-2A>G	.	CGGATCTGCAGCA	.	82	35	110	0	.	70225	C	7574035	T	C	7574035	5	2	155	1	0	0	0	0	0	0	1	0	16378	1594	55	2	197	2	TP53	17	7574035	Splice_Site	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	1192065	7574035	73621175	116	19920											
KRT39	390792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39114975	39114975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_213656	exon7	c.G1354A	p.G452R	GGGGTCCGCAGGC	.	204	43	210	1	.	.	T	39114975	C	T	39114975	3	4	155	1	0	0	0	0	1	0	0	0	8476	661	23	1	125	1	KRT39	17	39114975	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	31540940	39114975	42080235	117	19921											
KRTAP1-3	81850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39190602	39190602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_030966	exon1	c.T472C	p.C158R	AGCAGCAGACTGG	.	263	46	294	0	.	.	G	39190602	A	G	39190602	3	3	155	1	0	0	0	0	1	0	0	0	8503	188	7	2	35	2	KRTAP1-3	17	39190602	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	75627	39190602	42004608	118	19922											
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48148866	48148866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITGA3	NM_005501	exon6	c.G943A	p.D315N	CTGGCAGACCTGA	.	26	7	21	0	.	229	A	48148866	G	A	48148866	3	1	155	1	0	0	0	0	1	0	0	0	7877	942	33	3	965	3	ITGA3	17	48148866	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	8958264	48148866	33046344	119	19923											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51901739	51901739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF2B	NM_032559	exon1	c.G1345T	p.A449S	GATTTAGCTGGGA	.	94	16	101	0	.	98	T	51901739	G	T	51901739	3	4	155	1	0	0	0	0	1	0	0	0	8298	971	34	3	1347	3	KIF2B	17	51901739	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	3752873	51901739	29293471	120	19924											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56700253	56700253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TEX14	NM_198393	exon4	c.C372A	p.N124K	CTTCGGGTTTTGA	.	129	56	135	0	.	810	T	56700253	G	T	56700253	3	4	155	1	0	0	0	0	1	0	0	0	15775	1252	44	3	4223	3	TEX14	17	56700253	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	4798514	56700253	24494957	121	19925											
CD300E	342510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72613454	72613454	+	Missense_Mutation	SNP	G	G	C	rs201462551	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CD300E	NM_181449	exon2	c.C191G	p.T64S	CCCTTGGTCTCCA	.	164	18	150	0	G|0.999;A|0.000	156	C	72613454	G	C	72613454	3	2	155	1	0	0	0	0	1	0	0	0	2998	1261	44	4	438	4	CD300E	17	72613454	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	15913201	72613454	8581756	122	19926											
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33267144	33267144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GALNT1	NM_020474	exon5	c.C854T	p.P285L	CTCTTCCTGTCAG	.	133	17	129	0	.	92	T	33267144	C	T	33267144	3	4	155	1	0	0	0	0	1	0	0	0	6207	681	24	3	872	3	GALNT1	18	33267144	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		33267144	44810104	123	19927											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34156482	34156482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FHOD3	NM_025135	exon6	c.T580C	p.W194R	ATTCAGTGGCTGT	.	180	24	188	0	.	139	C	34156482	T	C	34156482	3	2	155	1	0	0	0	0	1	0	0	0	5883	1696	59	2	602	2	FHOD3	18	34156482	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	889338	34156482	43920766	124	19928											
DOK6	220164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67425047	67425047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DOK6	NM_152721	exon7	c.G794A	p.R265H	TTCCTCGCAGCGC	.	97	42	85	1	.	92	A	67425047	G	A	67425047	3	1	155	1	0	0	0	0	1	0	0	0	4701	1087	38	1	820	1	DOK6	18	67425047	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	33268565	67425047	10652201	125	19929											
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76754132	76754132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SALL3	NM_171999	exon2	c.G2141T	p.R714L	GCGGCCGCGCCTT	.	75	17	133	0	.	155	T	76754132	G	T	76754132	3	4	155	1	0	0	0	0	1	0	0	0	13812	1087	38	1	2147	1	SALL3	18	76754132	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	9329085	76754132	1323116	126	19930											
PSG11	5680	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	43528932	43528932	+	Missense_Mutation	SNP	C	C	A	rs111739483	byfrequency;alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_002785	exon2	c.G341T	p.R114L	TCCTCCCGGGTGA	.	364	44	292	0	C|0.977;T|0.023	.	A	43528932	C	A	43528932	3	1	155	1	0	0	0	0	1	0	0	0	12654	652	23	1	682	1	PSG11	19	43528932	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		43528932	15600051	127	19931											
KLK1	3816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51322605	51322605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KLK1	NM_002257	exon5	c.G634A	p.G212S	AATCACCCTGGGA	.	79	5	63	0	.	226	T	51322605	C	T	51322605	3	4	155	1	0	0	0	0	1	0	0	0	8397	637	22	3	158	3	KLK1	19	51322605	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	7793673	51322605	7806378	128	19932											
ZNF528	84436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52919064	52919064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ZNF528	NM_032423	exon7	c.C959A	p.T320N	TTCATACTGGAGA	.	90	7	89	0	.	92	A	52919064	C	A	52919064	3	1	155	1	0	0	0	0	1	0	0	0	17966	565	20	3	973	3	ZNF528	19	52919064	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	1596459	52919064	6209919	129	19933											
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175244	57175244	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ZNF835	NM_001005850	exon2	c.G1323A	p.T441T	CTCGCCCGTGTGC	.	35	10	60	0	.	72	T	57175244	C	T	57175244	2	4	155	1	0	0	0	0	0	0	0	1	18183	639	23	1		1	ZNF835	19	57175244	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	4256180	57175244	1953739	130	19934											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47269978	47269978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PREX1	NM_020820	exon20	c.G2267A	p.G756D	TTGCTGCCATTGA	.	63	18	67	0	.	231	T	47269978	C	T	47269978	3	4	155	1	0	0	0	0	1	0	0	0	12476	739	26	3	2796	3	PREX1	20	47269978	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		47269978	15755542	131	19935											
CDH4	1002	broad.mit.edu;bcgsc.ca	37	20	60499390	60499390	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CDH4	NM_001794	exon11	c.1629-2A>G	.	CTCCGCAGATACT	.	47	5	85	0	.	282	G	60499390	A	G	60499390	5	3	155	1	0	0	0	0	0	0	1	0	3112	202	7	2	1669	2	CDH4	20	60499390	Splice_Site	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	13229412	60499390	2526130	132	19936											
EEF1A2	1917	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62120486	62120486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EEF1A2	NM_001958	exon7	c.C1049G	p.P350R	TGCCCCGGGTGGT	.	78	25	73	1	.	90	C	62120486	G	C	62120486	3	2	155	1	0	0	0	0	1	0	0	0	4924	1116	39	4	350	4	EEF1A2	20	62120486	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	1621096	62120486	905034	133	19937											
KRTAP19-1	337882	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31852613	31852613	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRTAP19-1	NM_181607	exon1	c.C24T	p.Y8Y	GCCTCCGTAGTAG	.	171	34	197	1	.	68	A	31852613	G	A	31852613	2	1	155	1	0	0	0	0	0	0	0	1	8528	1140	40	1		1	KRTAP19-1	21	31852613	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10		31852613	16277282	134	19938											
KRTAP8-1	337879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32185533	32185533	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRTAP8-1	NM_175857	exon1	c.C6G	p.L2L	GTCGCAGAGCATG	.	173	52	190	0	.	68	C	32185533	G	C	32185533	2	2	155	1	0	0	0	0	0	0	0	1	8572	929	33	4		4	KRTAP8-1	21	32185533	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	332920	32185533	15944362	135	19939											
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	42598204	42598204	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	BACE2	NM_138992	exon2	c.C324A	p.L108L	GATTCTCGTTGAC	.	200	14	160	0	.	92	A	42598204	C	A	42598204	2	1	155	1	0	0	0	0	0	0	0	1	1282	871	31	1		1	BACE2	21	42598204	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	10412671	42598204	5531691	136	19940											
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45107710	45107710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RRP1B	NM_015056	exon13	c.A1455T	p.E485D	CAGGGAAATGTTG	.	131	25	120	0	.	91	T	45107710	A	T	45107710	3	4	155	1	0	0	0	0	1	0	0	0	13688	11	1	4	1505	4	RRP1B	21	45107710	Missense_Mutation	SNP	A	TCGA-G3-A5SM-01A-12D-A28X-10	2509506	45107710	3022185	137	19941											
ADORA2A	135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24837235	24837235	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ADORA2A	NM_000675	exon3	c.C1017T	p.N339N	TCTCAACGGCCAC	.	90	15	82	1	.	90	T	24837235	C	T	24837235	2	4	155	1	0	0	0	0	0	0	0	1	327	535	19	1		1	ADORA2A	22	24837235	Silent	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10		24837235	26467331	138	19942											
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248325	3248325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MXRA5	NM_015419	exon4	c.A443C	p.N148T	AAGCCGTTGAAAG	.	327	56	362	1	.	136	G	3248325	T	G	3248325	3	3	155	1	0	0	0	0	1	0	0	0	10003	1725	60	5	8059	5	MXRA5	23	3248325	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10		3248325	152022235	139	19943											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51638377	51638377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MAGED1	NM_001005333	exon4	c.T442C	p.Y148H	GGTGTCTATGATT	.	120	19	127	0	.	133	C	51638377	T	C	51638377	3	2	155	1	0	0	0	0	1	0	0	0	9183	1522	53	2	452	2	MAGED1	23	51638377	Missense_Mutation	SNP	T	TCGA-G3-A5SM-01A-12D-A28X-10	48390052	51638377	103632183	140	19944											
KDM5C	8242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53246991	53246991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KDM5C	NM_004187	exon4	c.G509T	p.G170V	TTGGCTCCAGACT	.	227	43	241	0	.	1272	A	53246991	C	A	53246991	3	1	155	1	0	0	0	0	1	0	0	0	8135	855	30	3	4363	3	KDM5C	23	53246991	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	1608614	53246991	102023569	141	19945											
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	53277365	53277365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	IQSEC2	NM_001111125	exon7	c.G2513A	p.R838Q	AACTTCCGGAGCG	.	158	11	150	0	.	178	T	53277365	C	T	53277365	3	4	155	1	0	0	0	0	1	0	0	0	7818	652	23	1	1989	1	IQSEC2	23	53277365	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	30374	53277365	101993195	142	19946											
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977917	107977917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	IRS4	NM_003604	exon1	c.C1658T	p.A553V	CCACCTGCGGTGC	.	41	8	56	0	.	623	A	107977917	G	A	107977917	3	1	155	1	0	0	0	0	1	0	0	0	7842	1319	46	3	2119	3	IRS4	23	107977917	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	54700552	107977917	47292643	143	19947											
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141440	114141440	+	Missense_Mutation	SNP	C	C	T	rs77459121		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTR2C	NM_000868	exon6	c.C839T	p.P280L	CAAACCCTAACCA	.	137	51	153	0	C|0.999;T|0.001	133	T	114141440	C	T	114141440	3	4	155	1	0	0	0	0	1	0	0	0	7443	681	24	3	853	3	HTR2C	23	114141440	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	6163523	114141440	41129120	144	19948											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123195634	123195634	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	STAG2	NM_001042749	exon17	c.G1548A	p.R516R	AGATAGGCAAGAG	.	138	22	152	0	.	134	A	123195634	G	A	123195634	2	1	155	1	0	0	0	0	0	0	0	1	15242	1194	42	3		3	STAG2	23	123195634	Silent	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	9054194	123195634	32074926	145	19949											
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153035892	153035892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PLXNB3	NM_001163257	exon10	c.C1955A	p.A652E	TGGAGGCGGCTGC	.	165	67	181	0	.	130	A	153035892	C	A	153035892	3	1	155	1	0	0	0	0	1	0	0	0	12125	768	27	1	2034	1	PLXNB3	23	153035892	Missense_Mutation	SNP	C	TCGA-G3-A5SM-01A-12D-A28X-10	29840258	153035892	2234668	146	19950											
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153042728	153042728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PLXNB3	NM_001163257	exon31	c.G5062A	p.E1688K	GCCACCGAGGAGC	.	121	45	137	0	.	130	A	153042728	G	A	153042728	3	1	155	1	0	0	0	0	1	0	0	0	12125	1059	37	1	5225	1	PLXNB3	23	153042728	Missense_Mutation	SNP	G	TCGA-G3-A5SM-01A-12D-A28X-10	6836	153042728	2227832	147	19951											
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32740006	32740006	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LCK	NM_005356	exon2	c.C76G	p.P26A	CATTATCCCATAG	.	95	46	79	0	.	1378	G	32740006	C	G	32740006	3	3	156	1	0	0	0	0	1	0	0	0	8676	855	30	4	78	4	LCK	1	32740006	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10		32740006	216510615	1	19952											
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89325566	89325566	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GTF2B	NM_001514	exon5	c.A534G	p.K178K	CTTACCTTTAAAT	.	68	28	50	0	.	154	C	89325566	T	C	89325566	2	2	156	1	0	0	0	0	0	0	0	1	6855	1623	56	2		2	GTF2B	1	89325566	Silent	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	56585560	89325566	159925055	2	19953											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103548452	103548452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	COL11A1	NM_001854	exon2	c.C183G	p.C61W	GTTTGTGCAAAAT	.	62	25	47	0	.	586	C	103548452	G	C	103548452	3	2	156	1	0	0	0	0	1	0	0	0	3667	1311	46	4	5658	4	COL11A1	1	103548452	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	14222886	103548452	145702169	3	19954											
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120284487	120284487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PHGDH	NM_006623	exon10	c.C1176A	p.N392K	GGTGAACGCTAAG	.	43	15	50	0	.	91	A	120284487	C	A	120284487	3	1	156	1	0	0	0	0	1	0	0	0	11841	535	19	1	1214	1	PHGDH	1	120284487	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	16736035	120284487	128966134	4	19955											
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145748546	145748546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PDZK1	NM_002614	exon4	c.A419G	p.K140R	TCGTGAAGGAAGG	.	467	268	284	0	.	90	G	145748546	A	G	145748546	3	3	156	1	0	0	0	0	1	0	0	0	11707	72	3	2	425	2	PDZK1	1	145748546	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	25464059	145748546	103502075	5	19956											
HIST2H2BE	8349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858163	149858163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HIST2H2BE	NM_003528	exon1	c.G28T	p.A10S	TAGGGGCCGGAGC	.	192	58	125	1	.	69	A	149858163	C	A	149858163	3	1	156	1	0	0	0	0	1	0	0	0	7179	739	26	3	356	3	HIST2H2BE	1	149858163	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	4109617	149858163	99392458	6	19957											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152282595	152282595	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FLG	NM_002016	exon3	c.C4767A	p.R1589R	TCCCTGGCGCCTG	.	142	39	136	0	.	106	T	152282595	G	T	152282595	2	4	156	1	0	0	0	0	0	0	0	1	5922	1190	42	3		3	FLG	1	152282595	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	2424432	152282595	96968026	7	19958											
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183111767	183111767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LAMC1	NM_002293	exon28	c.G4672A	p.V1558M	AGGAAAGTGTCTG	.	125	37	71	0	.	252	A	183111767	G	A	183111767	3	1	156	1	0	0	0	0	1	0	0	0	8614	1029	36	3	4782	3	LAMC1	1	183111767	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	30829172	183111767	66138854	8	19959											
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186839647	186839648	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.ML38II	TGACATGCGTAAG	.	113	30	57	0	.	.	AA	186839648	GC	AA	186839647	3	1	156	1	0	0	0	0	1	0	0	0	12001	1333	46	3	120	3	PLA2G4A	1	186839647	Missense_Mutation	DNP	GC	TCGA-G3-A6UC-01A-21D-A33K-10	3727880	186839647	62410974	9	19960											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190067609	190067609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM5C	NM_199051	exon8	c.C1840A	p.L614M	TCCCCAGAGTTAA	.	73	21	67	0	.	228	T	190067609	G	T	190067609	3	4	156	1	0	0	0	0	1	0	0	0	5594	933	33	3	464	3	FAM5C	1	190067609	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	3227962	190067609	59183012	10	19961											
NUAK2	81788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205273292	205273292	+	Silent	SNP	C	C	T	rs149020592	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NUAK2	NM_030952	exon7	c.G1173A	p.T391T	ATCAGCCGTGTCA	.	107	32	90	0	C|0.999;T|0.001	391	T	205273292	C	T	205273292	2	4	156	1	0	0	0	0	0	0	0	1	10713	639	23	1		1	NUAK2	1	205273292	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	15205683	205273292	43977329	11	19962											
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231096999	231096999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TTC13	NM_001122835	exon2	c.T322G	p.S108A	AGGGTGATGATCC	.	106	27	67	0	.	92	C	231096999	A	C	231096999	3	2	156	1	0	0	0	0	1	0	0	0	16677	333	12	5	2348	5	TTC13	1	231096999	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	25823707	231096999	18153622	12	19963											
OR2W5	441932	hgsc.bcm.edu;bcgsc.ca	37	1	247655247	247655247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR2W5	NM_001004698	exon1	c.818delT	p.V273fs	GGGAAGTTCCTGA	.	301	101	180	0	.	115	-	247655247	T	-	247655247	7	5	156	1	0	1	0	1	0	0	0	0	11034	1725	60	0	820	0	OR2W5	1	247655247	Frame_Shift_Del	DEL	T	TCGA-G3-A6UC-01A-21D-A33K-10	16558248	247655247	1595374	13	19964											
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247875237	247875237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR6F1	NM_001005286	exon1	c.T821C	p.V274A	ACGTGGACAGCTT	.	93	30	69	0	.	68	G	247875237	A	G	247875237	3	3	156	1	0	0	0	0	1	0	0	0	11201	275	10	2	109	2	OR6F1	1	247875237	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	219990	247875237	1375384	14	19965											
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11348447	11348447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ROCK2	NM_004850	exon19	c.A2330T	p.E777V	AGGAGCTCATTTA	.	49	18	38	0	.	546	A	11348447	T	A	11348447	3	1	156	1	0	0	0	0	1	0	0	0	13518	1551	54	4	1896	4	ROCK2	2	11348447	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		11348447	231850926	15	19966											
ADCY3	109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25141567	25141567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ADCY3	NM_004036	exon1	c.C290A	p.A97D	ACCACAGCACACA	.	138	52	147	0	.	94	T	25141567	G	T	25141567	3	4	156	1	0	0	0	0	1	0	0	0	295	971	34	3	3228	3	ADCY3	2	25141567	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	13793120	25141567	218057806	16	19967											
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61258660	61258660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PEX13	NM_002618	exon2	c.A199G	p.S67G	AGTAGCAGTGTGA	.	92	31	78	0	.	91	G	61258660	A	G	61258660	3	3	156	1	0	0	0	0	1	0	0	0	11741	188	7	2	205	2	PEX13	2	61258660	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	36117093	61258660	181940713	17	19968											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98996755	98996755	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CNGA3	NM_001298	exon4	c.C333A	p.S111S	GGTGTCCAGCCAA	.	90	38	115	0	.	96	A	98996755	C	A	98996755	2	1	156	1	0	0	0	0	0	0	0	1	3598	581	21	3		3	CNGA3	2	98996755	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	37738095	98996755	144202618	18	19969											
CCDC74B	91409	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130897613	130897613	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC74B	NM_207310	exon6	c.G933A	p.E311E	AGCTTCCTCCGGG	.	75	28	74	1	.	90	T	130897613	C	T	130897613	2	4	156	1	0	0	0	0	0	0	0	1	2848	680	24	3		3	CCDC74B	2	130897613	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	31900858	130897613	112301760	19	19970											
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	132290493	132290493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC74A	NM_001258305	exon5	c.G740A	p.R247K	CCCGGAGGAAGCT	.	218	42	260	0	.	69	A	132290493	G	A	132290493	3	1	156	1	0	0	0	0	1	0	0	0	2847	991	35	3	955	3	CCDC74A	2	132290493	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	1392880	132290493	110908880	20	19971											
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135095832	135095832	+	Silent	SNP	G	G	A	rs138350444		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MGAT5	NM_002410	exon6	c.G648A	p.A216A	CTAGGCGGAAATT	.	228	103	226	0	G|0.999;A|0.001	93	A	135095832	G	A	135095832	2	1	156	1	0	0	0	0	0	0	0	1	9548	1103	39	1		1	MGAT5	2	135095832	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	2805339	135095832	108103541	21	19972											
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159526271	159526271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PKP4	NM_001005476	exon17	c.G2768A	p.G923D	TCCCCGGCGGCAA	.	186	83	224	0	.	97	A	159526271	G	A	159526271	3	1	156	1	0	0	0	0	1	0	0	0	11987	1203	42	3	2830	3	PKP4	2	159526271	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	24430439	159526271	83673102	22	19973											
SP3	6670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	174820558	174820558	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SP3	NM_003111	exon4	c.682delA	p.I228fs	GTGGTATGAGATT	.	63	32	72	0	.	227	-	174820558	T	-	174820558	7	5	156	1	0	1	0	1	0	0	0	0	14965	1464	51	0	1679	0	SP3	2	174820558	Frame_Shift_Del	DEL	T	TCGA-G3-A6UC-01A-21D-A33K-10	15294287	174820558	68378815	23	19974											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179484523	179484523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TTN	NM_001267550	exon250	c.G46521T	p.K15507N	TTCCACCTTATCT	.	77	40	62	0	.	636	A	179484523	C	A	179484523	3	1	156	1	0	0	0	0	1	0	0	0	16732	680	24	3	61624	3	TTN	2	179484523	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	4663965	179484523	63714850	24	19975											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201531449	201531449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	AOX1	NM_001159	exon32	c.A3583G	p.I1195V	TGCAGTATAAATC	.	83	39	73	0	.	96	G	201531449	A	G	201531449	3	3	156	1	0	0	0	0	1	0	0	0	729	449	16	2	3709	2	AOX1	2	201531449	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	22046926	201531449	41667924	25	19976											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215813394	215813394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCA12	NM_173076	exon47	c.G7030A	p.D2344N	CCAGGTCATCTAA	.	159	59	140	0	.	99	T	215813394	C	T	215813394	3	4	156	1	0	0	0	0	1	0	0	0	30	826	29	3	785	3	ABCA12	2	215813394	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	14281945	215813394	27385979	26	19977											
SP140	11262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231090583	231090583	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SP140	NM_007237	exon1	c.G24A	p.G8G	GCAGGGGCAGATG	.	100	38	72	1	.	90	A	231090583	G	A	231090583	2	1	156	1	0	0	0	0	0	0	0	1	14962	1190	42	3		3	SP140	2	231090583	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	15277189	231090583	12108790	27	19978											
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	1189706	1189706	+	Nonsense_Mutation	SNP	G	G	A	rs144055237	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CNTN6	NM_014461	exon2	c.G14A	p.W5X	TGCTATGGAAACT	.	171	62	122	0	G|1.000;C|0.000	345	A	1189706	G	A	1189706	4	1	156	1	0	0	0	0	0	1	0	0	3645	1357	47	3	16	3	CNTN6	3	1189706	Nonsense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10		1189706	196832724	28	19979											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10136948	10136948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FANCD2	NM_001018115	exon41	c.G4028A	p.G1343E	TGTGTGGGCATTC	.	117	58	110	0	.	229	A	10136948	G	A	10136948	3	1	156	1	0	0	0	0	1	0	0	0	5665	1232	43	3	4186	3	FANCD2	3	10136948	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	8947242	10136948	187885482	29	19980											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	154	70	183	0	.	24361	C	41266100	T	C	41266100	3	2	156	1	0	0	0	0	1	0	0	0	4016	1551	54	2	103	2	CTNNB1	3	41266100	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	31129152	41266100	156756330	30	19981											
SETD2	29072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47164905	47164905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SETD2	NM_014159	exon3	c.T1221C	p.S407S	AGACCTAGAGTGA	.	110	56	109	2	.	1273	G	47164905	A	G	47164905	2	3	156	1	0	0	0	0	0	0	0	1	14131	407	15	2		2	SETD2	3	47164905	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	5898805	47164905	150857525	31	19982											
DOCK3	1795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51412013	51412013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DOCK3	NM_004947	exon50	c.G5407A	p.G1803R	GAGAACGGACAGG	.	164	72	155	1	.	22	A	51412013	G	A	51412013	3	1	156	1	0	0	0	0	1	0	0	0	4688	1117	39	1	5605	1	DOCK3	3	51412013	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	4247108	51412013	146610417	32	19983											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52434364	52434364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DNAH1	NM_015512	exon78	c.T12700A	p.S4234T	GGACACTCTACCA	.	78	34	87	0	.	67	A	52434364	T	A	52434364	3	1	156	1	0	0	0	0	1	0	0	0	4597	1551	54	4	13006	4	DNAH1	3	52434364	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	1022351	52434364	145588066	33	19984											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52598201	52598201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PBRM1	NM_018313	exon24	c.C3665T	p.T1222I	ATTTCAGTTGGCC	.	70	31	79	0	.	575	A	52598201	G	A	52598201	3	1	156	1	0	0	0	0	1	0	0	0	11491	1029	36	3	1192	3	PBRM1	3	52598201	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	163837	52598201	145424229	34	19985											
NSUN3	63899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93802963	93802963	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NSUN3	NM_022072	exon3	c.A135G	p.T45T	ACTAACATCTCCA	.	117	48	126	0	.	91	G	93802963	A	G	93802963	2	3	156	1	0	0	0	0	0	0	0	1	10679	204	8	2		2	NSUN3	3	93802963	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	41204762	93802963	104219467	35	19986											
SENP7	57337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101058948	101058948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SENP7	NM_020654	exon16	c.T2348A	p.F783Y	AGGTAAAAATCAA	.	293	116	258	0	.	661	T	101058948	A	T	101058948	3	4	156	1	0	0	0	0	1	0	0	0	14051	14	1	4	840	4	SENP7	3	101058948	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	7255985	101058948	96963482	36	19987											
ZDHHC23	254887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113667674	113667674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZDHHC23	NM_173570	exon2	c.C25T	p.P9S	ATGAAGCCTGTGA	.	65	29	48	0	.	92	T	113667674	C	T	113667674	3	4	156	1	0	0	0	0	1	0	0	0	17611	739	26	3	27	3	ZDHHC23	3	113667674	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	12608726	113667674	84354756	37	19988											
QTRTD1	79691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113785076	113785076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	QTRTD1	NM_001256835	exon3	c.G238A	p.A80T	TACAGAGCAGAAC	.	59	27	50	0	.	91	A	113785076	G	A	113785076	3	1	156	1	0	0	0	0	1	0	0	0	12886	985	34	3	208	3	QTRTD1	3	113785076	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	117402	113785076	84237354	38	19989											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130129336	130129336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_153264	exon20	c.G4630T	p.V1544L	AAAGGGGTGCAAG	.	129	57	98	0	.	.	T	130129336	G	T	130129336	3	4	156	1	0	0	0	0	1	0	0	0	3702	1261	44	3	4704	3	COL6A5	3	130129336	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	16344260	130129336	67893094	39	19990											
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281700	140281700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CLSTN2	NM_022131	exon14	c.T2260G	p.Y754D	ATCCGCTACCGCA	.	121	47	116	0	.	157	G	140281700	T	G	140281700	3	3	156	1	0	0	0	0	1	0	0	0	3562	1522	53	5	2314	5	CLSTN2	3	140281700	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	10152364	140281700	57740730	40	19991											
MECOM	2122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168810848	168810848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MECOM	NM_004991	exon14	c.G3062C	p.G1021A	ATCGCACCTGTAC	.	62	6	45	1	.	853	G	168810848	C	G	168810848	3	3	156	1	0	0	0	0	1	0	0	0	9422	507	18	4	673	4	MECOM	3	168810848	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	28529148	168810848	29211582	41	19992											
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180359906	180359906	+	Silent	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC39	NM_181426	exon13	c.T1749A	p.L583L	TAGGGAAAGAACT	.	102	42	83	0	.	72	T	180359906	A	T	180359906	2	4	156	1	0	0	0	0	0	0	0	1	2811	1	1	4		4	CCDC39	3	180359906	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	11549058	180359906	17662524	42	19993											
MAP6D1	79929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	183543020	183543020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAP6D1	NM_024871	exon1	c.G316A	p.A106T	GTGGCGCGGAGGA	.	23	10	30	0	.	90	T	183543020	C	T	183543020	3	4	156	1	0	0	0	0	1	0	0	0	9265	768	27	1	295	1	MAP6D1	3	183543020	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	3183114	183543020	14479410	43	19994											
UBXN7	26043	hgsc.bcm.edu;broad.mit.edu	37	3	196159225	196159226	+	In_Frame_Ins	INS	-	-	CCC	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	UBXN7	NM_015562	exon1	c.46_47insGGG	p.L16delinsGL	GAATTAACCCCTT	.	151	57	154	0	.	71	CCC	196159226	-	CCC	196159225	7	5	156	1	0	1	1	0	0	0	0	0	16915	40	2	0	1467	0	UBXN7	3	196159225	In_Frame_Ins	INS	-	TCGA-G3-A6UC-01A-21D-A33K-10	12616205	196159225	1863205	44	19995											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	3241784	3241784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HTT	NM_002111	exon67	c.T9427A	p.X3143R	ACCTGCTGAGCGC	.	81	44	88	0	.	281	A	3241784	T	A	3241784	3	1	156	1	0	0	0	0	1	0	0	0	7457	1593	55	4	9693	4	HTT	4	3241784	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		3241784	187912492	45	19996											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79373018	79373018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FRAS1	NM_025074	exon46	c.G6556C	p.D2186H	TTGATTGACAAGT	.	55	20	56	0	.	68	C	79373018	G	C	79373018	3	2	156	1	0	0	0	0	1	0	0	0	6042	1290	45	4	6813	4	FRAS1	4	79373018	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	76131234	79373018	111781258	46	19997											
PRDM8	56978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	81123282	81123282	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRDM8	NM_001099403	exon4	c.C666A	p.G222G	TTTAGGCCCGGGT	.	154	67	213	0	.	91	A	81123282	C	A	81123282	2	1	156	1	0	0	0	0	0	0	0	1	12462	726	26	3		3	PRDM8	4	81123282	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	1750264	81123282	110030994	47	19998											
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87024360	87024360	+	Missense_Mutation	SNP	G	G	A	rs138883015		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAPK10	NM_002753	exon6	c.C404T	p.T135M	TCCAGCGTTTTCT	.	50	19	43	0	G|1.000;A|0.000	1402	A	87024360	G	A	87024360	3	1	156	1	0	0	0	0	1	0	0	0	9272	1145	40	1	1031	1	MAPK10	4	87024360	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	5901078	87024360	104129916	48	19999											
PRMT10	90826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148575293	148575293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRMT10	NM_138364	exon9	c.A1755T	p.L585F	CACATCTAACACG	.	148	69	148	2	.	91	A	148575293	T	A	148575293	3	1	156	1	0	0	0	0	1	0	0	0	12536	1519	53	4	798	4	PRMT10	4	148575293	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	61550933	148575293	42578983	49	20000											
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54763785	54763785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPAP2A	NM_176895	exon3	c.G406A	p.D136N	CTGGATCACAAAC	.	76	31	83	0	.	92	T	54763785	C	T	54763785	3	4	156	1	0	0	0	0	1	0	0	0	12290	826	29	3	467	3	PPAP2A	5	54763785	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10		54763785	126151475	50	20001											
ANKRD55	79722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55472050	55472050	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ANKRD55	NM_024669	exon4	c.T241C	p.L81L	TCTTCAACAGCAG	.	100	41	76	0	.	91	G	55472050	A	G	55472050	2	3	156	1	0	0	0	0	0	0	0	1	681	40	2	2		2	ANKRD55	5	55472050	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	708265	55472050	125443210	51	20002											
ALDH7A1	501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	125896800	125896800	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ALDH7A1	NM_001202404	exon10	c.A969G	p.E323E	TCCAAGTTCCAAC	.	505	172	473	0	.	227	C	125896800	T	C	125896800	2	2	156	1	0	0	0	0	0	0	0	1	504	1722	60	2		2	ALDH7A1	5	125896800	Silent	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	70424750	125896800	55018460	52	20003											
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27222637	27222637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRSS16	NM_005865	exon10	c.T1316C	p.V439A	ACAAAGTGCTGTT	.	181	63	55	0	.	94	C	27222637	T	C	27222637	3	2	156	1	0	0	0	0	1	0	0	0	12616	1696	59	2	1354	2	PRSS16	6	27222637	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		27222637	143892430	53	20004											
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32084267	32084267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ATF6B	NM_004381	exon17	c.G1872A	p.M624I	GGGGGCCATGGCA	.	175	54	61	0	.	90	T	32084267	C	T	32084267	3	4	156	1	0	0	0	0	1	0	0	0	1085	594	21	3	247	3	ATF6B	6	32084267	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	4861630	32084267	139030800	54	20005											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32166274	32166274	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NOTCH4	NM_004557	exon26	c.G4680T	p.A1560A	AGGGAGCGCCCCA	.	176	67	99	0	.	1321	A	32166274	C	A	32166274	2	1	156	1	0	0	0	0	0	0	0	1	10551	755	27	1		1	NOTCH4	6	32166274	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	82007	32166274	138948793	55	20006											
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155007	43155007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CUL9	NM_015089	exon6	c.C1411T	p.P471S	TGGAATCCTATGG	.	204	40	63	1	.	529	T	43155007	C	T	43155007	3	4	156	1	0	0	0	0	1	0	0	0	4061	855	30	3	1429	3	CUL9	6	43155007	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	10988733	43155007	127960060	56	20007											
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43306248	43306248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF318	NM_014345	exon10	c.A5488C	p.M1830L	CAATCATTAGCAA	.	272	61	136	0	.	157	G	43306248	T	G	43306248	3	3	156	1	0	0	0	0	1	0	0	0	17833	1493	52	5	1355	5	ZNF318	6	43306248	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	151241	43306248	127808819	57	20008											
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116972883	116972883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZUFSP	NM_145062	exon7	c.A1168T	p.I390F	TTGGAATGCAAGG	.	51	46	29	0	.	69	A	116972883	T	A	116972883	3	1	156	1	0	0	0	0	1	0	0	0	18243	1464	51	4	584	4	ZUFSP	6	116972883	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	73666635	116972883	54142184	58	20009											
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151687721	151687722	+	Missense_Mutation	DNP	CC	CC	TA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.R160L	CTGTGGCCGTGGA	.	54	46	95	0	.	.	TA	151687722	CC	TA	151687721	3	4	156	1	0	0	0	0	1	0	0	0	17525	726	26	3	1068	3	ZBTB2	6	151687721	Missense_Mutation	DNP	CC	TCGA-G3-A6UC-01A-21D-A33K-10	34714838	151687721	19427346	59	20010											
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5352548	5352548	+	Silent	SNP	T	T	G	rs112615228	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TNRC18	NM_001080495	exon27	c.A7974C	p.S2658S	GGAGGATGAGGAC	.	30	13	32	0	T|0.500;A|0.500	46	G	5352548	T	G	5352548	2	3	156	1	0	0	0	0	0	0	0	1	16336	1451	51	5		5	TNRC18	7	5352548	Silent	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		5352548	153786115	60	20011											
ABCB5	340273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20685646	20685646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCB5	NM_001163941	exon9	c.T866A	p.V289E	CAAAAGTGTCTCT	.	165	42	117	1	.	158	A	20685646	T	A	20685646	3	1	156	1	0	0	0	0	1	0	0	0	44	1696	59	4	896	4	ABCB5	7	20685646	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	15333098	20685646	138453017	61	20012											
TRA2A	29896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23545860	23545860	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TRA2A	NM_013293	exon6	c.G667C	p.G223R	CGCCGCCGCCTCC	.	116	40	76	0	.	91	G	23545860	C	G	23545860	3	3	156	1	0	0	0	0	1	0	0	0	16430	652	23	4	193	4	TRA2A	7	23545860	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	2860214	23545860	135592803	62	20013											
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43846653	43846653	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	BLVRA	NM_001253823	exon9	c.C710G	p.S237C	CTGGGTCCTTGGA	.	72	26	56	0	.	91	G	43846653	C	G	43846653	3	3	156	1	0	0	0	0	1	0	0	0	1451	855	30	4	736	4	BLVRA	7	43846653	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	20300793	43846653	115292010	63	20014											
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	57529339	57529339	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF716	NM_001159279	exon4	c.T1172A	p.L391X	TTAGCTTACCCTC	.	73	33	78	0	.	24	A	57529339	T	A	57529339	4	1	156	1	0	0	0	0	0	1	0	0	18116	1764	61	4	1186	4	ZNF716	7	57529339	Nonsense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	13682686	57529339	101609324	64	20015											
TYW1B	441250	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	72277659	72277659	+	RNA	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	GTATACCTTGGTG	.	133	37	108	0	.	.	G	72277659	C	G	72277659	1	3	156	0	1	0	0	0	0	0	0	0	16816	695	24	4		4	TYW1B	7	72277659	RNA	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	14748320	72277659	86861004	65	20016											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94027070	94027070	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	COL1A2	NM_000089	exon2	c.G81A	p.E27E	ACAAGAGGTGAGT	.	301	83	148	0	.	521	A	94027070	G	A	94027070	2	1	156	1	0	0	0	0	0	0	0	1	3678	1014	35	3		3	COL1A2	7	94027070	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	21749411	94027070	65111593	66	20017											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113558467	113558467	+	Silent	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPP1R3A	NM_002711	exon1	c.T585A	p.V195V	AGGAGGAACCAAT	.	126	39	75	0	.	832	T	113558467	A	T	113558467	2	4	156	1	0	0	0	0	0	0	0	1	12371	233	9	4		4	PPP1R3A	7	113558467	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	19531397	113558467	45580196	67	20018											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131829964	131829964	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PLXNA4	NM_020911	exon29	c.C5139A	p.I1713I	GTACTTGATGGCC	.	195	44	136	0	.	91	T	131829964	G	T	131829964	2	4	156	1	0	0	0	0	0	0	0	1	12122	1280	45	3		3	PLXNA4	7	131829964	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	18271497	131829964	27308699	68	20019											
C8orf86	389649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38386043	38386043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	C8orf86	NM_207412	exon1	c.A113G	p.E38G	CCAAGCTCCTCAG	.	47	32	74	0	.	90	C	38386043	T	C	38386043	3	2	156	1	0	0	0	0	1	0	0	0	2442	1551	54	2	570	2	C8orf86	8	38386043	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		38386043	107977979	69	20020											
ZNF7	7553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	146067786	146067786	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF7	NM_003416	exon5	c.C1294T	p.Q432X	CAGCATCAGCTGA	.	59	20	36	0	.	94	T	146067786	C	T	146067786	4	4	156	1	0	0	0	0	0	1	0	0	18099	827	29	3	1308	3	ZNF7	8	146067786	Nonsense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	107681743	146067786	296236	70	20021											
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4544613	4544613	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLC1A1	NM_004170	exon2	c.T138C	p.T46T	CTCAACTCTAGAG	.	204	51	137	0	.	514	C	4544613	T	C	4544613	2	2	156	1	0	0	0	0	0	0	0	1	14431	1538	54	2		2	SLC1A1	9	4544613	Silent	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		4544613	136668818	71	20022											
GLDC	2731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6604681	6604681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GLDC	NM_000170	exon7	c.T965A	p.V322E	AGTGGCACTCCAA	.	253	69	113	1	.	92	T	6604681	A	T	6604681	3	4	156	1	0	0	0	0	1	0	0	0	6433	159	6	4	2173	4	GLDC	9	6604681	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	2060068	6604681	134608750	72	20023											
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	7103697	7103698	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.C813D	ATCTTCTGCAGAC	.	106	15	63	0	.	.	GA	7103698	TG	GA	7103697	3	3	156	1	0	0	0	0	1	0	0	0	8130	1580	55	5	2595	5	KDM4C	9	7103697	Missense_Mutation	DNP	TG	TCGA-G3-A6UC-01A-21D-A33K-10	499016	7103697	134109734	73	20024											
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21334479	21334479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	KLHL9	NM_018847	exon1	c.A380G	p.E127G	GCAGCTTCAAGTG	.	116	46	107	0	.	94	C	21334479	T	C	21334479	3	2	156	1	0	0	0	0	1	0	0	0	8396	1783	62	2	1477	2	KLHL9	9	21334479	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	14230782	21334479	119878952	74	20025											
ZBTB5	9925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37440805	37440805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZBTB5	NM_014872	exon2	c.C1744A	p.P582T	ACTGTGGAGGGCC	.	71	36	70	0	.	92	T	37440805	G	T	37440805	3	4	156	1	0	0	0	0	1	0	0	0	17548	1174	41	3	293	3	ZBTB5	9	37440805	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	16106326	37440805	103772626	75	20026											
PSMB7	5695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127174695	127174695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PSMB7	NM_002799	exon4	c.C331G	p.L111V	TGGAGAGGGAGTG	.	109	54	85	0	.	90	C	127174695	G	C	127174695	3	2	156	1	0	0	0	0	1	0	0	0	12682	1000	35	4	522	4	PSMB7	9	127174695	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	89733890	127174695	14038736	76	20027											
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595723	129595723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZBTB43	NM_001135776	exon2	c.A935T	p.D312V	ATTATGATGAGCA	.	56	18	51	0	.	91	T	129595723	A	T	129595723	3	4	156	1	0	0	0	0	1	0	0	0	17541	333	12	4	937	4	ZBTB43	9	129595723	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	2421028	129595723	11617708	77	20028											
ASS1	445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133327679	133327679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ASS1	NM_054012	exon2	c.G64T	p.V22L	ATCCTCGTGTGGC	.	53	26	68	0	.	91	T	133327679	G	T	133327679	3	4	156	1	0	0	0	0	1	0	0	0	1061	1145	40	1	66	1	ASS1	9	133327679	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	3731956	133327679	7885752	78	20029											
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5442825	5442825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TUBAL3	NM_024803	exon2	c.T229A	p.L77M	GCTCCAAGTCCAC	.	71	30	67	0	.	91	T	5442825	A	T	5442825	3	4	156	1	0	0	0	0	1	0	0	0	16748	69	3	4	1123	4	TUBAL3	10	5442825	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10		5442825	130091922	79	20030											
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75276369	75276369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	USP54	NM_152586	exon18	c.C3815G	p.S1272C	AGCTGAGAATCAC	.	70	24	57	0	.	721	C	75276369	G	C	75276369	3	2	156	1	0	0	0	0	1	0	0	0	17082	942	33	4	1259	4	USP54	10	75276369	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	69833544	75276369	60258378	80	20031											
WNT8B	7479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102239757	102239757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	WNT8B	NM_003393	exon3	c.G229A	p.G77R	CATGGTGGGCTTC	.	36	16	41	0	.	625	A	102239757	G	A	102239757	3	1	156	1	0	0	0	0	1	0	0	0	17394	1348	47	3	239	3	WNT8B	10	102239757	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	26963388	102239757	33294990	81	20032											
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47381480	47381480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SPI1	NM_001080547	exon3	c.A257G	p.Y86C	TGGCGGTAGAGCT	.	28	11	25	0	.	226	C	47381480	T	C	47381480	3	2	156	1	0	0	0	0	1	0	0	0	15048	1638	57	2	570	2	SPI1	11	47381480	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		47381480	87625036	82	20033											
OR9Q2	219957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57958110	57958110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR9Q2	NM_001005283	exon1	c.C148T	p.R50C	CTGATCCGTGGCG	.	91	44	126	0	.	115	T	57958110	C	T	57958110	3	4	156	1	0	0	0	0	1	0	0	0	11256	652	23	1	150	1	OR9Q2	11	57958110	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	10576630	57958110	77048406	83	20034											
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67953257	67953257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SUV420H1	NM_017635	exon3	c.T299G	p.M100R	GTATTCATTTTGT	.	98	38	70	0	.	228	C	67953257	A	C	67953257	3	2	156	1	0	0	0	0	1	0	0	0	15411	217	8	5	2402	5	SUV420H1	11	67953257	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	9995147	67953257	67053259	84	20035											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92531036	92531036	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAT3	NM_001008781	exon9	c.C4857T	p.V1619V	ACCGGTCCTAGGC	.	174	75	182	0	.	73	T	92531036	C	T	92531036	2	4	156	1	0	0	0	0	0	0	0	1	5691	842	30	3		3	FAT3	11	92531036	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	24577779	92531036	42475480	85	20036											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108381599	108381599	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	EXPH5	NM_015065	exon6	c.G4635A	p.Q1545Q	TGCCTCCTGACTT	.	89	43	89	0	.	95	T	108381599	C	T	108381599	2	4	156	1	0	0	0	0	0	0	0	1	5322	680	24	3		3	EXPH5	11	108381599	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	15850563	108381599	26624917	86	20037											
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118245829	118245829	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	UBE4A	NM_004788	exon9	c.A1356G	p.L452L	GAAGCTATGCCAG	.	111	53	91	0	.	229	G	118245829	A	G	118245829	2	3	156	1	0	0	0	0	0	0	0	1	16879	436	16	2		2	UBE4A	11	118245829	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	9864230	118245829	16760687	87	20038											
DCPS	28960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126201385	126201385	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DCPS	NM_014026	exon3	c.G462A	p.T154T	AGAGACGGGAGAT	.	45	25	55	1	.	90	A	126201385	G	A	126201385	2	1	156	1	0	0	0	0	0	0	0	1	4301	1103	39	1		1	DCPS	11	126201385	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	7955556	126201385	8805131	88	20039											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	41949558	41949558	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PDZRN4	NM_001164595	exon7	c.T1361A	p.L454X	GGATTTTGCAAGT	.	71	31	72	0	.	296	A	41949558	T	A	41949558	4	1	156	1	0	0	0	0	0	1	0	0	11710	1821	63	4	1460	4	PDZRN4	12	41949558	Nonsense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		41949558	91902337	89	20040											
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	42858275	42858275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRICKLE1	NM_001144882	exon7	c.C1561G	p.L521V	ACTCCAGGGAATC	.	108	47	89	0	.	518	C	42858275	G	C	42858275	3	2	156	1	0	0	0	0	1	0	0	0	12486	991	35	4	942	4	PRICKLE1	12	42858275	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	908717	42858275	90993620	90	20041											
C12orf68	387856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48578199	48578200	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.Q99K	GCCCCGCCAGGGC	.	25	13	19	0	.	.	AA	48578200	CC	AA	48578199	3	1	156	1	0	0	0	0	1	0	0	0	1710	726	26	3	296	3	C12orf68	12	48578199	Missense_Mutation	DNP	CC	TCGA-G3-A6UC-01A-21D-A33K-10	5719924	48578199	85273696	91	20042											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67699851	67699851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CAND1	NM_018448	exon10	c.A2403C	p.K801N	TGCCAAATGTGTA	.	80	38	63	0	.	516	C	67699851	A	C	67699851	3	2	156	1	0	0	0	0	1	0	0	0	2615	98	4	5	2441	5	CAND1	12	67699851	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	19121652	67699851	66152044	92	20043											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	72017346	72017346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZFC3H1	NM_144982	exon24	c.T4538G	p.V1513G	TCAGCTACTATTC	.	96	48	61	0	.	138	C	72017346	A	C	72017346	3	2	156	1	0	0	0	0	1	0	0	0	17630	391	14	5	1479	5	ZFC3H1	12	72017346	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	4317495	72017346	61834549	93	20044											
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133197658	133197658	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	P2RX2	NM_170683	exon8	c.G846A	p.K282K	CCCCAAGTACTCC	.	42	24	50	0	.	68	A	133197658	G	A	133197658	2	1	156	1	0	0	0	0	0	0	0	1	11340	1020	36	3		3	P2RX2	12	133197658	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	61180312	133197658	654237	94	20045											
ZDHHC20	253832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	21974596	21974597	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZDHHC20	NM_153251	exon7	c.510_511insT	p.F170fs	CAGGAAGAATTTG	.	405	177	332	0	.	23	A	21974597	-	A	21974596	7	5	156	1	0	1	1	0	0	0	0	0	17608	933	33	0	578	0	ZDHHC20	13	21974596	Frame_Shift_Ins	INS	-	TCGA-G3-A6UC-01A-21D-A33K-10		21974596	93195282	95	20046											
ATP8A2	51761	hgsc.bcm.edu;bcgsc.ca	37	13	26273415	26273416	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.L773F	GTACGCGCTCTCC	.	56	18	68	0	.	.	TT	26273416	GC	TT	26273415	3	4	156	1	0	0	0	0	1	0	0	0	1193	1074	38	1	2414	1	ATP8A2	13	26273415	Missense_Mutation	DNP	GC	TCGA-G3-A6UC-01A-21D-A33K-10	4298819	26273415	88896463	96	20047											
FAM124A	220108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	51854702	51854702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM124A	NM_145019	exon5	c.C1059A	p.S353R	TGGCAGCAGCCAG	.	44	13	49	0	.	90	A	51854702	C	A	51854702	3	1	156	1	0	0	0	0	1	0	0	0	5425	709	25	3	1077	3	FAM124A	13	51854702	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	25581287	51854702	63315176	97	20048											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20876328	20876328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TEP1	NM_007110	exon2	c.A271C	p.M91L	TCTCCATGGTCTT	.	182	75	173	0	.	95	G	20876328	T	G	20876328	3	3	156	1	0	0	0	0	1	0	0	0	15756	1464	51	5	7828	5	TEP1	14	20876328	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		20876328	86473212	98	20049											
MTHFD1	4522	broad.mit.edu;bcgsc.ca	37	14	64914955	64914955	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MTHFD1	NM_005956	exon23	c.A2199G	p.K733K	TGAAAAAGGCTTC	.	98	6	74	0	.	92	G	64914955	A	G	64914955	2	3	156	1	0	0	0	0	0	0	0	1	9927	69	3	2		2	MTHFD1	14	64914955	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	44038627	64914955	42434585	99	20050											
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75230510	75230510	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	YLPM1	NM_019589	exon1	c.G318T	p.P106P	GCCACCGATGCCC	.	45	15	38	0	.	71	T	75230510	G	T	75230510	2	4	156	1	0	0	0	0	0	0	0	1	17483	1045	37	1		1	YLPM1	14	75230510	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	10315555	75230510	32119030	100	20051											
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75590868	75590868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NEK9	NM_033116	exon2	c.G278A	p.R93H	TCACGACGTTCCT	.	134	13	131	0	.	359	T	75590868	C	T	75590868	3	4	156	1	0	0	0	0	1	0	0	0	10331	536	19	1	2745	1	NEK9	14	75590868	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	360358	75590868	31758672	101	20052											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089139	86089139	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FLRT2	NM_013231	exon2	c.C1281A	p.L427L	CCAGCTCTCTATC	.	137	58	171	0	.	94	A	86089139	C	A	86089139	2	1	156	1	0	0	0	0	0	0	0	1	5939	900	32	3		3	FLRT2	14	86089139	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	10498271	86089139	21260401	102	20053											
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359765	33359765	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FMN1	NM_001103184	exon1	c.T321C	p.S107S	TCTCTGACTTCCC	.	166	44	111	0	.	23	G	33359765	A	G	33359765	2	3	156	1	0	0	0	0	0	0	0	1	5949	272	10	2		2	FMN1	15	33359765	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10		33359765	69171627	103	20054											
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359984	33359984	+	Silent	SNP	A	A	T	rs184741064	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FMN1	NM_001103184	exon1	c.T102A	p.S34S	TTTCATAGAGAAC	.	127	39	79	0	A|0.999;G|0.000	23	T	33359984	A	T	33359984	2	4	156	1	0	0	0	0	0	0	0	1	5949	407	15	4		4	FMN1	15	33359984	Silent	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	219	33359984	69171408	104	20055											
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57731023	57731023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CGNL1	NM_001252335	exon3	c.C826T	p.L276F	GATGTTCTTCCCT	.	237	58	196	0	.	100	T	57731023	C	T	57731023	3	4	156	1	0	0	0	0	1	0	0	0	3304	913	32	3	828	3	CGNL1	15	57731023	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	24371039	57731023	44800369	105	20056											
LCTL	197021	broad.mit.edu;bcgsc.ca	37	15	66850163	66850163	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LCTL	NM_207338	exon8	c.C819G	p.P273P	GTCCTTGGGGTTA	.	204	10	113	0	.	92	C	66850163	G	C	66850163	2	2	156	1	0	0	0	0	0	0	0	1	8694	1335	47	4		4	LCTL	15	66850163	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	9119140	66850163	35681229	106	20057											
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	67358566	67358566	+	Missense_Mutation	SNP	G	G	T	rs191612061	by1000genomes	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SMAD3	NM_005902	exon1	c.G74T	p.G25V	AGAACGGGCAGGA	.	89	27	87	0	G|0.999;T|0.000	904	T	67358566	G	T	67358566	3	4	156	1	0	0	0	0	1	0	0	0	14759	1232	43	3	76	3	SMAD3	15	67358566	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	508403	67358566	35172826	107	20058											
ABCC11	85320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48234210	48234210	+	Missense_Mutation	SNP	C	C	T	rs16945928	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCC11	NM_033151	exon14	c.G2059A	p.V687I	CCAGGACGACCGT	.	60	27	76	0	C|0.988;T|0.012	95	T	48234210	C	T	48234210	3	4	156	1	0	0	0	0	1	0	0	0	51	536	19	1	2153	1	ABCC11	16	48234210	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10		48234210	42120543	108	20059											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51173435	51173435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SALL1	NM_002968	exon2	c.A2698G	p.N900D	AATCATTGGTCAG	.	65	25	67	0	.	98	C	51173435	T	C	51173435	3	2	156	1	0	0	0	0	1	0	0	0	13810	1812	63	2	1284	2	SALL1	16	51173435	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	2939225	51173435	39181318	109	20060											
USP6	9098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5072174	5072174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	USP6	NM_004505	exon27	c.A3341G	p.D1114G	CACGAGACCCGGC	.	188	88	218	1	.	662	G	5072174	A	G	5072174	3	3	156	1	0	0	0	0	1	0	0	0	17083	275	10	2	3443	2	USP6	17	5072174	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10		5072174	76123036	110	20061											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10399270	10399270	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYH1	NM_005963	exon35	c.C5166G	p.T1722T	CACCTGGGTGTGC	.	59	28	63	0	.	171	C	10399270	G	C	10399270	2	2	156	1	0	0	0	0	0	0	0	1	10029	1219	43	4		4	MYH1	17	10399270	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	5327096	10399270	70795940	111	20062											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408340	10408340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYH1	NM_005963	exon22	c.G2478A	p.M826I	CACATTCATGAAG	.	67	31	85	0	.	171	T	10408340	C	T	10408340	3	4	156	1	0	0	0	0	1	0	0	0	10029	826	29	3	3417	3	MYH1	17	10408340	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	9070	10408340	70786870	112	20063											
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	33769276	33769276	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLFN13	NM_144682	exon5	c.G1228T	p.E410X	GGGACTCTGGAGT	.	43	19	41	0	.	91	A	33769276	C	A	33769276	4	1	156	1	0	0	0	0	0	1	0	0	14736	922	32	3	1473	3	SLFN13	17	33769276	Nonsense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	23360936	33769276	47425934	113	20064											
PIGW	284098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	34894023	34894034	+	In_Frame_Del	DEL	AAGTAAATGTAG	AAGTAAATGTAG	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	AAGTAAATGTAG	AAGTAAATGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PIGW	NM_178517	exon2	c.1073_1084del	p.358_362del	TAGTTCAAGTAAA	.	53	12	53	0	.	226	-	34894034	AAGTAAATGTAG	-	34894023	7	5	156	1	0	1	0	1	0	0	0	0	11902	130	5	0	1075	0	PIGW	17	34894023	In_Frame_Del	DEL	AAGTAAATGTAG	TCGA-G3-A6UC-01A-21D-A33K-10	1124747	34894023	46301187	114	20065											
SOCS7	30837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36508355	36508355	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SOCS7	NM_014598	exon1	c.C228T	p.V76V	GACAGTCGGTGGG	.	38	12	28	0	.	227	T	36508355	C	T	36508355	2	4	156	1	0	0	0	0	0	0	0	1	14919	871	31	1		1	SOCS7	17	36508355	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	1614332	36508355	44686855	115	20066											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34156492	34156492	+	Missense_Mutation	SNP	C	C	A	rs147225084	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FHOD3	NM_025135	exon6	c.C590A	p.T197N	TGTACACTCTCAT	.	86	32	82	0	C|1.000;T|0.000	139	A	34156492	C	A	34156492	3	1	156	1	0	0	0	0	1	0	0	0	5883	565	20	3	612	3	FHOD3	18	34156492	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10		34156492	43920756	116	20067											
SLC14A2	8170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43223109	43223109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLC14A2	NM_001242692	exon10	c.C1139T	p.A380V	TCTGTGCATACAT	.	99	41	72	1	.	93	T	43223109	C	T	43223109	3	4	156	1	0	0	0	0	1	0	0	0	14397	710	25	3	1169	3	SLC14A2	18	43223109	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	9066617	43223109	34854139	117	20068											
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54285333	54285333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TXNL1	NM_004786	exon4	c.A394G	p.K132E	CAGCTTTGTTAAT	.	51	23	47	0	.	90	C	54285333	T	C	54285333	3	2	156	1	0	0	0	0	1	0	0	0	16801	1821	63	2	495	2	TXNL1	18	54285333	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	11062224	54285333	23791915	118	20069											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768705	31768705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TSHZ3	NM_020856	exon2	c.G1994A	p.R665H	TGGCTGCGGAAGC	.	44	18	65	0	.	232	T	31768705	C	T	31768705	3	4	156	1	0	0	0	0	1	0	0	0	16622	768	27	1	1255	1	TSHZ3	19	31768705	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10		31768705	27360278	119	20070											
PSG3	5671	broad.mit.edu;mdanderson.org	37	19	43234066	43234066	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PSG3	NM_021016	exon4	c.C852A	p.P284P	TACCCTGGGACTG	.	26	14	31	0	.	92	T	43234066	G	T	43234066	2	4	156	1	0	0	0	0	0	0	0	1	12656	1335	47	3		3	PSG3	19	43234066	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	11465361	43234066	15894917	120	20071											
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47192900	47192900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRKD2	NM_016457	exon14	c.A1865T	p.K622I	AACACTTTCTCAG	.	103	47	128	0	.	759	A	47192900	T	A	47192900	3	1	156	1	0	0	0	0	1	0	0	0	12519	1841	64	4	791	4	PRKD2	19	47192900	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	3958834	47192900	11936083	121	20072											
ZNF331	55422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54080362	54080362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF331	NM_001253801	exon5	c.G548T	p.G183V	ATACTGGGGAGAA	.	100	51	113	0	.	663	T	54080362	G	T	54080362	3	4	156	1	0	0	0	0	1	0	0	0	17846	1232	43	3	558	3	ZNF331	19	54080362	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	6887462	54080362	5048621	122	20073											
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57839129	57839129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF543	NM_213598	exon4	c.A299G	p.E100G	TGCCTGAGGAAGT	.	220	46	239	0	.	92	G	57839129	A	G	57839129	3	3	156	1	0	0	0	0	1	0	0	0	17973	304	11	2	313	2	ZNF543	19	57839129	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	3758767	57839129	1289854	123	20074											
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58549467	58549467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZSCAN1	NM_182572	exon3	c.G263A	p.G88D	TCCTGGGCGCGCT	.	37	21	19	0	.	92	A	58549467	G	A	58549467	3	1	156	1	0	0	0	0	1	0	0	0	18223	1203	42	3	265	3	ZSCAN1	19	58549467	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	710338	58549467	579516	124	20075											
SIRPB1	10326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1551500	1551500	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SIRPB1	NM_006065	exon4	c.C1035G	p.A345A	CTCCAGGGCATAG	.	107	34	70	1	.	91	C	1551500	G	C	1551500	2	2	156	1	0	0	0	0	0	0	0	1	14333	1219	43	4		4	SIRPB1	20	1551500	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10		1551500	61474020	125	20076											
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3893207	3893207	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PANK2	NM_153638	exon4	c.G1338A	p.V446V	CAAAGTGGATAAA	.	121	36	77	0	.	115	A	3893207	G	A	3893207	2	1	156	1	0	0	0	0	0	0	0	1	11417	1335	47	3		3	PANK2	20	3893207	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	2341707	3893207	59132313	126	20077											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34057783	34057783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CEP250	NM_007186	exon10	c.A920G	p.K307R	TGATAAAGGCTCT	.	85	38	66	0	.	27	G	34057783	A	G	34057783	3	3	156	1	0	0	0	0	1	0	0	0	3252	72	3	2	946	2	CEP250	20	34057783	Missense_Mutation	SNP	A	TCGA-G3-A6UC-01A-21D-A33K-10	30164576	34057783	28967737	127	20078											
FAM83D	81610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37580989	37580998	+	Frame_Shift_Del	DEL	CAAAGAGCGG	CAAAGAGCGG	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CAAAGAGCGG	CAAAGAGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM83D	NM_030919	exon4	c.1674_1683del	p.558_561del	CTTGAACAAAGAG	.	91	16	125	0	.	93	-	37580998	CAAAGAGCGG	-	37580989	7	5	156	1	0	1	0	1	0	0	0	0	5636	477	17	0	1688	0	FAM83D	20	37580989	Frame_Shift_Del	DEL	CAAAGAGCGG	TCGA-G3-A6UC-01A-21D-A33K-10	3523206	37580989	25444531	128	20079											
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39792440	39792440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PLCG1	NM_182811	exon10	c.T977C	p.L326P	ACCCTCTTTCCCA	.	82	39	73	0	.	911	C	39792440	T	C	39792440	3	2	156	1	0	0	0	0	1	0	0	0	12035	1609	56	2	1015	2	PLCG1	20	39792440	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	2211451	39792440	23233080	129	20080											
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42338684	42338684	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYBL2	NM_002466	exon10	c.C1587T	p.Y529Y	GAAGTACGGACCC	.	71	16	103	0	.	415	T	42338684	C	T	42338684	2	4	156	1	0	0	0	0	0	0	0	1	10010	547	19	1		1	MYBL2	20	42338684	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	2546244	42338684	20686836	130	20081											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60892042	60892042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LAMA5	NM_005560	exon56	c.A7549G	p.R2517G	TGGCCCTCTGGGT	.	32	17	23	0	.	93	C	60892042	T	C	60892042	3	2	156	1	0	0	0	0	1	0	0	0	8609	1550	54	2	3638	2	LAMA5	20	60892042	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	18553358	60892042	2133478	131	20082											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61525548	61525548	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DIDO1	NM_001193369	exon13	c.2573-2A>T	.	CTGGCCTGAAGAA	.	38	17	41	0	.	96	A	61525548	T	A	61525548	5	1	156	1	0	0	0	0	0	0	1	0	4522	1594	55	4	4200	4	DIDO1	20	61525548	Splice_Site	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	633506	61525548	1499972	132	20083											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62340049	62340049	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZGPAT	NM_032527	exon2	c.G117A	p.L39L	CCAGCTGCAGGGG	.	41	15	43	0	.	90	A	62340049	G	A	62340049	2	1	156	1	0	0	0	0	0	0	0	1	17671	1306	46	3		3	ZGPAT	20	62340049	Silent	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	814501	62340049	685471	133	20084											
DGCR14	8220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19124884	19124884	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DGCR14	NM_022719	exon8	c.A987G	p.E329E	CGACCCTTCAACT	.	126	52	148	0	.	116	C	19124884	T	C	19124884	2	2	156	1	0	0	0	0	0	0	0	1	4460	1606	56	2		2	DGCR14	22	19124884	Silent	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10		19124884	32179682	134	20085											
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31328358	31328358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MORC2	NM_014941	exon25	c.A2643G	p.I881M	AAAAGATATTAGC	.	54	30	69	0	.	92	C	31328358	T	C	31328358	3	2	156	1	0	0	0	0	1	0	0	0	9702	1396	49	2	281	2	MORC2	22	31328358	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	12203474	31328358	19976208	135	20086											
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50688856	50688856	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HDAC10	NM_032019	exon3	c.G291T	p.P97P	ACGCACCGGGTGG	.	57	36	68	0	.	226	A	50688856	C	A	50688856	2	1	156	1	0	0	0	0	0	0	0	1	7005	666	23	1		1	HDAC10	22	50688856	Silent	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	19360498	50688856	615710	136	20087											
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78618461	78618461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ITM2A	NM_004867	exon3	c.C419G	p.A140G	ATAATTGCTGCAG	.	157	140	140	1	.	131	C	78618461	G	C	78618461	3	2	156	1	0	0	0	0	1	0	0	0	7912	1319	46	4	388	4	ITM2A	23	78618461	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10		78618461	76652099	137	20088											
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90690655	90690655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PABPC5	NM_080832	exon2	c.C79T	p.P27S	TTGGACCCAGATG	.	62	15	61	0	.	110	T	90690655	C	T	90690655	3	4	156	1	0	0	0	0	1	0	0	0	11367	623	22	3	81	3	PABPC5	23	90690655	Missense_Mutation	SNP	C	TCGA-G3-A6UC-01A-21D-A33K-10	12072194	90690655	64579905	138	20089											
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977380	107977380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	IRS4	NM_003604	exon1	c.A2195G	p.H732R	CGAGAGTGGCGCT	.	85	78	115	0	.	623	C	107977380	T	C	107977380	3	2	156	1	0	0	0	0	1	0	0	0	7842	1696	59	2	1582	2	IRS4	23	107977380	Missense_Mutation	SNP	T	TCGA-G3-A6UC-01A-21D-A33K-10	17286725	107977380	47293180	139	20090											
MAGEA6	4105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151870008	151870008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAGEA6	NM_005363	exon3	c.G698T	p.G233V	TTGAGGGGAGGGA	.	222	10	134	0	.	90	T	151870008	G	T	151870008	3	4	156	1	0	0	0	0	1	0	0	0	9170	1232	43	3	700	3	MAGEA6	23	151870008	Missense_Mutation	SNP	G	TCGA-G3-A6UC-01A-21D-A33K-10	43892628	151870008	3400552	140	20091											
SAMD11	148398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	878348	878348	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SAMD11	NM_152486	exon11	c.1474delG	p.G492fs	CCAGCTGGAGGGG	.	65	27	93	0	.	90	-	878348	G	-	878348	7	5	157	1	0	1	0	1	0	0	0	0	13816	1349	47	0	1512	0	SAMD11	1	878348	Frame_Shift_Del	DEL	G	TCGA-G3-A7M5-01A-11D-A33Q-10		878348	248372273	1	20092											
PRDM16	63976	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3329100	3329100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PRDM16	NM_022114	exon9	c.A2339G	p.K780R	AGCCCAAAGACGT	.	29	6	27	0	.	660	G	3329100	A	G	3329100	3	3	157	1	0	0	0	0	1	0	0	0	12457	14	1	2	2373	2	PRDM16	1	3329100	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2450752	3329100	245921521	2	20093											
LOC440563	0	bcgsc.ca;mdanderson.org	37	1	13183341	13183341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_001136561	exon2	c.G532A	p.D178N	GGTCATCTCCTTT	.	170	21	130	0	.	.	T	13183341	C	T	13183341	3	4	157	1	0	0	0	0	1	0	0	0	8879	913	32	3	353	3	LOC440563	1	13183341	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	9854241	13183341	236067280	3	20094											
C1orf94	84970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34667730	34667730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	C1orf94	NM_001134734	exon4	c.C1316A	p.T439K	AGTACACAGGGAA	.	88	45	145	1	.	90	A	34667730	C	A	34667730	3	1	157	1	0	0	0	0	1	0	0	0	2071	478	17	3	1330	3	C1orf94	1	34667730	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	21484389	34667730	214582891	4	20095											
IPP	3652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46184955	46184955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IPP	NM_001145349	exon6	c.A1106C	p.Q369P	GTCCACTGTTTAG	.	72	43	68	0	.	91	G	46184955	T	G	46184955	3	3	157	1	0	0	0	0	1	0	0	0	7800	1580	55	5	766	5	IPP	1	46184955	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	11517225	46184955	203065666	5	20096											
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70505455	70505455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRRC7	NM_020794	exon19	c.A3834G	p.I1278M	ACATATAGAAGCT	.	66	14	65	0	.	163	G	70505455	A	G	70505455	3	3	157	1	0	0	0	0	1	0	0	0	9020	410	15	2	3908	2	LRRC7	1	70505455	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	24320500	70505455	178745166	6	20097											
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	75716965	75716965	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLC44A5	NM_152697	exon7	c.T275A	p.L92X	TAAAACAAAATGG	.	78	24	65	0	.	95	T	75716965	A	T	75716965	4	4	157	1	0	0	0	0	0	1	0	0	14639	131	5	4	2067	4	SLC44A5	1	75716965	Nonsense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	5211510	75716965	173533656	7	20098											
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86919189	86919189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CLCA2	NM_006536	exon13	c.C2293A	p.P765T	GTGTTTCCACCAT	.	65	29	40	0	.	155	A	86919189	C	A	86919189	3	1	157	1	0	0	0	0	1	0	0	0	3458	855	30	3	2343	3	CLCA2	1	86919189	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	11202224	86919189	162331432	8	20099											
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	92554445	92554445	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	BTBD8	NM_183242	exon2	c.340delT	p.F114fs	AGAACGTTTTTAC	.	94	49	109	0	.	91	-	92554445	T	-	92554445	7	5	157	1	0	1	0	1	0	0	0	0	1547	1725	60	0	346	0	BTBD8	1	92554445	Frame_Shift_Del	DEL	T	TCGA-G3-A7M5-01A-11D-A33Q-10	5635256	92554445	156696176	9	20100											
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108152569	108152569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VAV3	NM_006113	exon22	c.T1999A	p.Y667N	AAGAATAATCTAC	.	114	43	93	0	.	1339	T	108152569	A	T	108152569	3	4	157	1	0	0	0	0	1	0	0	0	17130	362	13	4	568	4	VAV3	1	108152569	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	15598124	108152569	141098052	10	20101											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113657138	113657138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRIG2	NM_014813	exon15	c.G2170A	p.A724T	AGTCCTGCCCCTC	.	69	21	57	0	.	229	A	113657138	G	A	113657138	3	1	157	1	0	0	0	0	1	0	0	0	8945	1319	46	3	2228	3	LRIG2	1	113657138	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	5504569	113657138	135593483	11	20102											
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152128332	152128332	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RPTN	NM_001122965	exon3	c.T1243A	p.Y415N	GACTGTAGTGGGA	.	172	88	106	0	.	68	T	152128332	A	T	152128332	3	4	157	1	0	0	0	0	1	0	0	0	13664	420	15	4	1115	4	RPTN	1	152128332	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	38471194	152128332	97122289	12	20103											
FCRL2	79368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157740434	157740434	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FCRL2	NM_030764	exon3	c.75delC	p.P25fs	AGAAGAGGGCGCC	.	59	27	49	0	.	92	-	157740434	G	-	157740434	7	5	157	1	0	1	0	1	0	0	0	0	5795	987	35	0	1491	0	FCRL2	1	157740434	Frame_Shift_Del	DEL	G	TCGA-G3-A7M5-01A-11D-A33Q-10	5612102	157740434	91510187	13	20104											
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175433	159175433	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DARC	NM_001122951	exon1	c.C210T	p.T70T	CCTCACCAGTGTC	.	64	28	70	0	.	659	T	159175433	C	T	159175433	2	4	157	1	0	0	0	0	0	0	0	1	4240	581	21	3		3	DARC	1	159175433	Silent	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	1434999	159175433	90075188	14	20105											
DUSP12	11266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161723027	161723027	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DUSP12	NM_007240	exon5	c.T837G	p.A279A	ATCTGCTTTGTTG	.	94	35	88	0	.	226	G	161723027	T	G	161723027	2	3	157	1	0	0	0	0	0	0	0	1	4812	1596	56	5		5	DUSP12	1	161723027	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	2547594	161723027	87527594	15	20106											
RGS4	5999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163043349	163043349	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RGS4	NM_001102445	exon5	c.T606A	p.S202S	ACCATCTAAACTA	.	259	101	242	0	.	652	A	163043349	T	A	163043349	2	1	157	1	0	0	0	0	0	0	0	1	13307	1509	53	4		4	RGS4	1	163043349	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	1320322	163043349	86207272	16	20107											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176838062	176838062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ASTN1	NM_004319	exon22	c.C3565T	p.H1189Y	CCCGGTGTAAGGT	.	204	68	174	0	.	319	A	176838062	G	A	176838062	3	1	157	1	0	0	0	0	1	0	0	0	1064	1377	48	3	331	3	ASTN1	1	176838062	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	13794713	176838062	72412559	17	20108											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179600021	179600021	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TDRD5	NM_173533	exon7	c.A1092T	p.L364L	CTTACTAGTGTTT	.	286	104	275	0	.	94	T	179600021	A	T	179600021	2	4	157	1	0	0	0	0	0	0	0	1	15730	407	15	4		4	TDRD5	1	179600021	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2761959	179600021	69650600	18	20109											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180904396	180904396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIAA1614	NM_020950	exon5	c.C1351A	p.R451S	CACGTGCGCTTTG	.	66	26	39	0	.	26	A	180904396	C	A	180904396	3	1	157	1	0	0	0	0	1	0	0	0	8248	768	27	1	1369	1	KIAA1614	1	180904396	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	1304375	180904396	68346225	19	20110											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181689967	181689967	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CACNA1E	NM_001205293	exon15	c.T1932A	p.P644P	CTTCCCTGCAGCC	.	46	13	27	0	.	95	A	181689967	T	A	181689967	2	1	157	1	0	0	0	0	0	0	0	1	2542	1567	55	4		4	CACNA1E	1	181689967	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	785571	181689967	67560654	20	20111											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181702886	181702886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CACNA1E	NM_001205293	exon21	c.A3262T	p.I1088F	GTGCACAGTGAGA	.	160	61	114	0	.	95	T	181702886	A	T	181702886	3	4	157	1	0	0	0	0	1	0	0	0	2542	202	7	4	3344	4	CACNA1E	1	181702886	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	12919	181702886	67547735	21	20112											
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183207463	183207463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LAMC2	NM_005562	exon19	c.C2776A	p.R926S	CTTTCCCGTGCCA	.	84	35	37	0	.	93	A	183207463	C	A	183207463	3	1	157	1	0	0	0	0	1	0	0	0	8615	652	23	1	2850	1	LAMC2	1	183207463	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	1504577	183207463	66043158	22	20113											
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192129516	192129516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RGS18	NM_130782	exon3	c.C230T	p.P77L	TCTCCCCTGAAGA	.	133	58	115	0	.	229	T	192129516	C	T	192129516	3	4	157	1	0	0	0	0	1	0	0	0	13300	681	24	3	240	3	RGS18	1	192129516	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	8922053	192129516	57121105	23	20114											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208252776	208252776	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLXNA2	NM_025179	exon12	c.A2415T	p.A805A	CTGGGCTGCACAC	.	85	33	72	0	.	92	A	208252776	T	A	208252776	2	1	157	1	0	0	0	0	0	0	0	1	12120	1567	55	4		4	PLXNA2	1	208252776	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	16123260	208252776	40997845	24	20115											
FAM71A	149647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212798434	212798434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAM71A	NM_153606	exon1	c.G215C	p.G72A	CCATGGGCATTGC	.	105	36	93	0	.	94	C	212798434	G	C	212798434	3	2	157	1	0	0	0	0	1	0	0	0	5607	1203	42	4	217	4	FAM71A	1	212798434	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	4545658	212798434	36452187	25	20116											
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228504614	228504614	+	Missense_Mutation	SNP	A	A	T	rs116329268		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OBSCN	NM_001271223	exon62	c.A16361T	p.Q5454L	GCGCCCAGCCCCA	.	15	5	21	0	A|0.994;T|0.006	403	T	228504614	A	T	228504614	3	4	157	1	0	0	0	0	1	0	0	0	10812	188	7	4	13688	4	OBSCN	1	228504614	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	15706180	228504614	20746007	26	20117											
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231471360	231471360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	EXOC8	NM_175876	exon1	c.C2132G	p.S711C	AGTCTAGATGCAT	.	203	72	145	0	.	91	C	231471360	G	C	231471360	3	2	157	1	0	0	0	0	1	0	0	0	5311	942	33	4	49	4	EXOC8	1	231471360	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	2966746	231471360	17779261	27	20118											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237804197	237804197	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RYR2	NM_001035	exon47	c.T7116G	p.L2372L	TGAAAGTGACACA	.	35	6	26	0	.	158	G	237804197	T	G	237804197	2	3	157	1	0	0	0	0	0	0	0	1	13769	1710	59	5		5	RYR2	1	237804197	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	6332837	237804197	11446424	28	20119											
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1652347	1652347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PXDN	NM_012293	exon17	c.G3205T	p.A1069S	TGAAGGCCGCGGT	.	41	19	46	0	.	166	A	1652347	C	A	1652347	3	1	157	1	0	0	0	0	1	0	0	0	12847	739	26	3	1262	3	PXDN	2	1652347	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10		1652347	241547026	29	20120											
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28752185	28752185	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLB1	NM_001170585	exon7	c.C327A	p.V109V	TTTAGTCCTTTCA	.	44	18	44	0	.	141	A	28752185	C	A	28752185	2	1	157	1	0	0	0	0	0	0	0	1	12024	869	30	3		3	PLB1	2	28752185	Silent	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	27099838	28752185	214447188	30	20121											
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	29226440	29226440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAM179A	NM_199280	exon6	c.C722T	p.P241L	CCATCCCAAAGGC	.	178	14	118	0	.	26	T	29226440	C	T	29226440	3	4	157	1	0	0	0	0	1	0	0	0	5505	594	21	3	740	3	FAM179A	2	29226440	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	474255	29226440	213972933	31	20122											
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	42530527	42530527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	EML4	NM_019063	exon16	c.A1840T	p.R614W	CAGGACAGGCAGG	.	143	62	125	0	.	3734	T	42530527	A	T	42530527	3	4	157	1	0	0	0	0	1	0	0	0	5099	179	7	4	1902	4	EML4	2	42530527	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	13304087	42530527	200668846	32	20123											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61520656	61520656	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	USP34	NM_014709	exon33	c.A4491G	p.L1497L	TTCTAATAACTGT	.	235	50	177	0	.	579	C	61520656	T	C	61520656	2	2	157	1	0	0	0	0	0	0	0	1	17062	1403	49	2		2	USP34	2	61520656	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	18990129	61520656	181678717	33	20124											
ARHGAP25	9938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69034418	69034418	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ARHGAP25	NM_001007231	exon5	c.G480A	p.Q160Q	TGGCCAGCGCTTG	.	186	72	196	0	.	274	A	69034418	G	A	69034418	2	1	157	1	0	0	0	0	0	0	0	1	874	962	34	3		3	ARHGAP25	2	69034418	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	7513762	69034418	174164955	34	20125											
VAX2	25806	broad.mit.edu;mdanderson.org	37	2	71127944	71127944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VAX2	NM_012476	exon1	c.G193A	p.D65N	GACAGCGACGGGC	.	20	9	16	0	.	90	A	71127944	G	A	71127944	3	1	157	1	0	0	0	0	1	0	0	0	17132	1058	37	1	195	1	VAX2	2	71127944	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	2093526	71127944	172071429	35	20126											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71650150	71650150	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF638	NM_014497	exon22	c.C3506G	p.T1169S	TTGAAACTCAAGG	.	133	45	102	0	.	94	G	71650150	C	G	71650150	3	3	157	1	0	0	0	0	1	0	0	0	18052	565	20	4	3588	4	ZNF638	2	71650150	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	522206	71650150	171549223	36	20127											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84880551	84880551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DNAH6	NM_001370	exon34	c.G5187C	p.E1729D	GCCTGAGATGTGT	.	95	38	84	0	.	69	C	84880551	G	C	84880551	3	2	157	1	0	0	0	0	1	0	0	0	4605	933	33	4	5317	4	DNAH6	2	84880551	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	13230401	84880551	158318822	37	20128											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121728098	121728099	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	.	.	.	p.Q326K	CCTGGCCCAGCAG	.	126	57	98	0	.	.	AA	121728099	CC	AA	121728098	3	1	157	1	0	0	0	0	1	0	0	0	6438	610	22	3	997	3	GLI2	2	121728098	Missense_Mutation	DNP	CC	TCGA-G3-A7M5-01A-11D-A33Q-10	36847547	121728098	121471275	38	20129											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148653868	148653868	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACVR2A	NM_001616	exon2	c.56-2A>T	.	TCTTATAGGTGCT	.	72	35	49	0	.	831	T	148653868	A	T	148653868	5	4	157	1	0	0	0	0	0	0	1	0	223	434	15	4	60	4	ACVR2A	2	148653868	Splice_Site	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	26925770	148653868	94545505	39	20130											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	148653984	148653984	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACVR2A	NM_001616	exon2	c.170delG	p.R57fs	ATAAACGGCGGCA	.	95	23	74	0	.	831	-	148653984	G	-	148653984	7	5	157	1	0	1	0	1	0	0	0	0	223	1116	39	0	176	0	ACVR2A	2	148653984	Frame_Shift_Del	DEL	G	TCGA-G3-A7M5-01A-11D-A33Q-10	116	148653984	94545389	40	20131	124	2									
ACVR2A	92	hgsc.bcm.edu;bcgsc.ca	37	2	148653987	148653987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACVR2A	NM_001616	exon2	c.G173C	p.R58P	AACGGCGGCATTG	.	96	25	73	0	.	831	C	148653987	G	C	148653987	3	2	157	1	0	0	0	0	1	0	0	0	223	1116	39	4	179	4	ACVR2A	2	148653987	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	3	148653987	94545386	41	20132	124	2									
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800725	185800725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF804A	NM_194250	exon4	c.G602T	p.G201V	AAGTTGGGGATCA	.	128	40	109	0	.	163	T	185800725	G	T	185800725	3	4	157	1	0	0	0	0	1	0	0	0	18167	1232	43	3	616	3	ZNF804A	2	185800725	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	37146738	185800725	57398648	42	20133											
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187697904	187697904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZSWIM2	NM_182521	exon7	c.A884T	p.Y295F	TCTATGTATTTTA	.	193	65	169	0	.	93	A	187697904	T	A	187697904	3	1	157	1	0	0	0	0	1	0	0	0	18238	1638	57	4	1029	4	ZSWIM2	2	187697904	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	1897179	187697904	55501469	43	20134											
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198948585	198948585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLCL1	NM_006226	exon2	c.T344A	p.M115K	GCTTCATGCAAGC	.	90	34	105	0	.	228	A	198948585	T	A	198948585	3	1	157	1	0	0	0	0	1	0	0	0	12039	1464	51	4	350	4	PLCL1	2	198948585	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	11250681	198948585	44250788	44	20135											
CNTN4	152330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	3084827	3084827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CNTN4	NM_175607	exon22	c.A2678T	p.N893I	CAGTCAATGTGAC	.	424	108	480	1	.	344	T	3084827	A	T	3084827	3	4	157	1	0	0	0	0	1	0	0	0	3643	101	4	4	2752	4	CNTN4	3	3084827	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		3084827	194937603	45	20136											
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	54880437	54880437	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CACNA2D3	NM_018398	exon17	c.T1569A	p.Y523X	CGGTTATGCCTTT	.	60	14	50	0	.	138	A	54880437	T	A	54880437	4	1	157	1	0	0	0	0	0	1	0	0	2550	1471	51	4	1635	4	CACNA2D3	3	54880437	Nonsense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	51795610	54880437	143141993	46	20137											
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57148802	57148802	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IL17RD	NM_017563	exon3	c.T228A	p.A76A	GGCGTCAGCAATC	.	65	35	53	0	.	500	T	57148802	A	T	57148802	2	4	157	1	0	0	0	0	0	0	0	1	7642	175	7	4		4	IL17RD	3	57148802	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2268365	57148802	140873628	47	20138											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64084768	64084768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PRICKLE2	NM_198859	exon8	c.A2494T	p.S832C	TCCTGCTGTGCAA	.	75	15	86	0	.	95	A	64084768	T	A	64084768	3	1	157	1	0	0	0	0	1	0	0	0	12487	1580	55	4	44	4	PRICKLE2	3	64084768	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	6935966	64084768	133937662	48	20139											
OR5H6	79295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97983418	97983418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR5H6	NM_001005479	exon1	c.T290G	p.M97R	CGAAGATGCTGAT	.	122	30	137	0	.	137	G	97983418	T	G	97983418	3	3	157	1	0	0	0	0	1	0	0	0	11163	1464	51	5	292	5	OR5H6	3	97983418	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	33898650	97983418	100039012	49	20140											
NR1I2	8856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119530549	119530549	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NR1I2	NM_022002	exon4	c.C612G	p.T204T	CACTACCTTCTCC	.	58	28	50	0	.	188	G	119530549	C	G	119530549	2	3	157	1	0	0	0	0	0	0	0	1	10620	668	24	4		4	NR1I2	3	119530549	Silent	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	21547131	119530549	78491881	50	20141											
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121712452	121712452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ILDR1	NM_001199799	exon7	c.G1144T	p.D382Y	CCCGGTCCTGGAG	.	111	58	102	0	.	91	A	121712452	C	A	121712452	3	1	157	1	0	0	0	0	1	0	0	0	7709	855	30	3	504	3	ILDR1	3	121712452	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	2181903	121712452	76309978	51	20142											
CCDC37	348807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	126135180	126135180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CCDC37	NM_182628	exon5	c.A247T	p.M83L	AAGACGATGCGGG	.	76	22	89	0	.	92	T	126135180	A	T	126135180	3	4	157	1	0	0	0	0	1	0	0	0	2809	333	12	4	261	4	CCDC37	3	126135180	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	4422728	126135180	71887250	52	20143											
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	136196226	136196226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	STAG1	NM_005862	exon10	c.T931A	p.C311S	CAATACAAATGGC	.	54	25	43	0	.	228	T	136196226	A	T	136196226	3	4	157	1	0	0	0	0	1	0	0	0	15241	130	5	4	2945	4	STAG1	3	136196226	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	10061046	136196226	61826204	53	20144											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152553693	152553693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	P2RY1	NM_002563	exon1	c.A122T	p.K41I	CGTTCAAATGCGC	.	112	59	112	0	.	500	T	152553693	A	T	152553693	3	4	157	1	0	0	0	0	1	0	0	0	11346	14	1	4	124	4	P2RY1	3	152553693	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	16357467	152553693	45468737	54	20145											
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168840403	168840403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MECOM	NM_004991	exon6	c.A943T	p.S315C	TTCCACTGTCATG	.	95	45	121	0	.	853	A	168840403	T	A	168840403	3	1	157	1	0	0	0	0	1	0	0	0	9422	1580	55	4	2827	4	MECOM	3	168840403	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	16286710	168840403	29182027	55	20146											
GPR160	26996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169802417	169802417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GPR160	NM_014373	exon4	c.A657C	p.E219D	GAATGAAACTATC	.	70	35	65	0	.	90	C	169802417	A	C	169802417	3	2	157	1	0	0	0	0	1	0	0	0	6664	11	1	5	659	5	GPR160	3	169802417	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	962014	169802417	28220013	56	20147											
KLHL24	54800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183381339	183381339	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KLHL24	NM_017644	exon4	c.A1014T	p.V338V	TCCTGTAACAGGA	.	70	40	75	0	.	91	T	183381339	A	T	183381339	2	4	157	1	0	0	0	0	0	0	0	1	8379	349	13	4		4	KLHL24	3	183381339	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	13578922	183381339	14641091	57	20148											
TPRG1	285386	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	189028173	189028173	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TPRG1	NM_198485	exon5	c.480-2A>T	.	TCTTGTAGGAGAC	.	100	21	91	1	.	90	T	189028173	A	T	189028173	5	4	157	1	0	0	0	0	0	0	1	0	16415	434	15	4	492	4	TPRG1	3	189028173	Splice_Site	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	5646834	189028173	8994257	58	20149											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195511179	195511179	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MUC4	NM_018406	exon2	c.A7272T	p.S2424S	GGAAGCTGAGGAA	.	370	31	357	0	.	90	A	195511179	T	A	195511179	2	1	157	1	0	0	0	0	0	0	0	1	9978	1567	55	4		4	MUC4	3	195511179	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	6483006	195511179	2511251	59	20150											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	20487848	20487848	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLIT2	NM_004787	exon7	c.A565T	p.R189X	ATTACTAGACTTT	.	330	251	311	0	.	521	T	20487848	A	T	20487848	4	4	157	1	0	0	0	0	0	1	0	0	14740	412	15	4	591	4	SLIT2	4	20487848	Nonsense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		20487848	170666428	60	20151											
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	38995620	38995620	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TMEM156	NM_024943	exon4	c.359-2A>T	.	AAGAACTAGAAAG	.	111	85	131	0	.	91	A	38995620	T	A	38995620	5	1	157	1	0	0	0	0	0	0	1	0	16070	1536	53	4	549	4	TMEM156	4	38995620	Splice_Site	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	18507772	38995620	152158656	61	20152											
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	43032535	43032535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GRXCR1	NM_001080476	exon4	c.G851A	p.R284H	TTCAGCGTTGTAA	.	93	17	75	0	.	23	A	43032535	G	A	43032535	3	1	157	1	0	0	0	0	1	0	0	0	6812	1145	40	1	865	1	GRXCR1	4	43032535	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	4036915	43032535	148121741	62	20153											
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80327914	80327914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GK2	NM_033214	exon1	c.G1441A	p.V481I	TGAGAACTGACAA	.	130	27	154	0	.	94	T	80327914	C	T	80327914	3	4	157	1	0	0	0	0	1	0	0	0	6421	565	20	3	224	3	GK2	4	80327914	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	37295379	80327914	110826362	63	20154											
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87622936	87622936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PTPN13	NM_006264	exon7	c.G1177A	p.E393K	CTGAGGGAAGCCA	.	97	77	116	1	.	230	A	87622936	G	A	87622936	3	1	157	1	0	0	0	0	1	0	0	0	12782	1175	41	3	1199	3	PTPN13	4	87622936	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	7295022	87622936	103531340	64	20155											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33576426	33576426	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ADAMTS12	NM_030955	exon19	c.A3705G	p.R1235R	CTCAACTCTGGGT	.	196	98	129	0	.	232	C	33576426	T	C	33576426	2	2	157	1	0	0	0	0	0	0	0	1	257	1548	54	2		2	ADAMTS12	5	33576426	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10		33576426	147338834	65	20156											
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45353293	45353293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	HCN1	NM_021072	exon5	c.A1286T	p.Q429L	ATCTTCTGACGCA	.	82	30	50	0	.	91	A	45353293	T	A	45353293	3	1	157	1	0	0	0	0	1	0	0	0	6996	1580	55	4	1402	4	HCN1	5	45353293	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	11776867	45353293	135561967	66	20157											
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74981226	74981226	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	POC5	NM_001099271	exon10	c.G1213C	p.A405P	GAGGAGCTGAAGG	.	97	32	105	0	.	45	G	74981226	C	G	74981226	3	3	157	1	0	0	0	0	1	0	0	0	12177	797	28	4	526	4	POC5	5	74981226	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	29627933	74981226	105934034	67	20158											
TMEM161B	153396	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	87494949	87494949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TMEM161B	NM_153354	exon10	c.C933A	p.F311L	AGTATCGAATGTG	.	142	60	106	1	.	92	T	87494949	G	T	87494949	3	4	157	1	0	0	0	0	1	0	0	0	16074	1049	37	1	542	1	TMEM161B	5	87494949	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	12513723	87494949	93420311	68	20159											
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102515845	102515845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PPIP5K2	NM_015216	exon23	c.A2878T	p.R960W	ATACACAGGAAGT	.	113	26	73	0	.	92	T	102515845	A	T	102515845	3	4	157	1	0	0	0	0	1	0	0	0	12333	179	7	4	2968	4	PPIP5K2	5	102515845	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	15020896	102515845	78399415	69	20160											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118407346	118407346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DMXL1	NM_005509	exon1	c.T82G	p.F28V	CAGCGCTTCACGG	.	94	18	62	0	.	92	G	118407346	T	G	118407346	3	3	157	1	0	0	0	0	1	0	0	0	4594	1609	56	5	84	5	DMXL1	5	118407346	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	15891501	118407346	62507914	70	20161											
TGFBI	7045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135388630	135388630	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TGFBI	NM_000358	exon8	c.G948C	p.M316I	AGCTATGTGTGCT	.	148	48	100	0	.	26	C	135388630	G	C	135388630	3	2	157	1	0	0	0	0	1	0	0	0	15817	1377	48	4	978	4	TGFBI	5	135388630	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	16981284	135388630	45526630	71	20162											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139838859	139838859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ANKHD1	NM_024668	exon9	c.A1591G	p.I531V	GCTGATATAGAAC	.	138	42	100	0	.	185	G	139838859	A	G	139838859	3	3	157	1	0	0	0	0	1	0	0	0	628	449	16	2	1625	2	ANKHD1	5	139838859	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	4450229	139838859	41076401	72	20163											
PCDHGA10	56106	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140793533	140793533	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_032090	exon1	c.A791T	p.Q264L	GCACTCAGCTGCT	.	109	36	68	1	.	.	T	140793533	A	T	140793533	3	4	157	1	0	0	0	0	1	0	0	0	11551	188	7	4	793	4	PCDHGA10	5	140793533	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	954674	140793533	40121727	73	20164											
AFAP1L1	134265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148682070	148682070	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	AFAP1L1	NM_001146337	exon5	c.T417C	p.P139P	GTCGCCTGAGTAC	.	59	17	51	0	.	136	C	148682070	T	C	148682070	2	2	157	1	0	0	0	0	0	0	0	1	354	1567	55	2		2	AFAP1L1	5	148682070	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	7888537	148682070	32233190	74	20165											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150946663	150946663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAT2	NM_001447	exon1	c.T1830A	p.F610L	TAGATCAAAATAC	.	126	42	88	0	.	96	T	150946663	A	T	150946663	3	4	157	1	0	0	0	0	1	0	0	0	5690	127	5	4	11311	4	FAT2	5	150946663	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2264593	150946663	29968597	75	20166											
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156816275	156816275	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CYFIP2	NM_001037332	exon29	c.C3286T	p.L1096L	GTCATCCTGACCC	.	96	57	61	0	.	22	T	156816275	C	T	156816275	2	4	157	1	0	0	0	0	0	0	0	1	4138	680	24	3		3	CYFIP2	5	156816275	Silent	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	5869612	156816275	24098985	76	20167											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu	37	6	15496721	15496722	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	JARID2	NM_004973	exon7	c.1265_1266insG	p.V422fs	AGGAGGTGGGGGG	.	74	10	58	0	.	228	G	15496722	-	G	15496721	7	5	157	1	0	1	1	0	0	0	0	0	7945	1696	59	0	1291	0	JARID2	6	15496721	Frame_Shift_Ins	INS	-	TCGA-G3-A7M5-01A-11D-A33Q-10		15496721	155618346	77	20168											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17794911	17794911	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIF13A	NM_001105567	exon24	c.A2967T	p.I989I	CATTTCTATTCTT	.	83	31	43	0	.	137	A	17794911	T	A	17794911	2	1	157	1	0	0	0	0	0	0	0	1	8274	1512	53	4		4	KIF13A	6	17794911	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	2298190	17794911	153320156	78	20169											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33643557	33643557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ITPR3	NM_002224	exon25	c.C3206T	p.P1069L	ATGCGCCGCTGGT	.	111	34	93	0	.	1085	T	33643557	C	T	33643557	3	4	157	1	0	0	0	0	1	0	0	0	7922	652	23	1	3304	1	ITPR3	6	33643557	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	15848646	33643557	137471510	79	20170											
KLHDC3	116138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42986094	42986094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KLHDC3	NM_057161	exon6	c.G533A	p.R178H	CTGCACGCTGGAG	.	60	32	47	0	.	91	A	42986094	G	A	42986094	3	1	157	1	0	0	0	0	1	0	0	0	8357	1087	38	1	551	1	KLHDC3	6	42986094	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	9342537	42986094	128128973	80	20171											
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146720714	146720714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GRM1	NM_000838	exon8	c.C2539G	p.R847G	AATGTCCGCAGTG	.	49	37	94	0	.	1080	G	146720714	C	G	146720714	3	3	157	1	0	0	0	0	1	0	0	0	6796	652	23	4	2565	4	GRM1	6	146720714	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	103734620	146720714	24394353	81	20172											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21757498	21757498	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DNAH11	.	.	.	.	GAGAACAAGCTTT	.	154	25	90	0	.	146	T	21757498	A	T	21757498	2	4	157	1	0	0	0	0	0	0	0	1	4599	117	5	4		4	DNAH11	7	21757498	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		21757498	137381165	82	20173											
WIPF3	644150	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	29874394	29874394	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	WIPF3	NM_001080529	exon2	c.G54T	p.L18L	GCCTCTGGGGGCT	.	301	40	198	1	.	69	T	29874394	G	T	29874394	2	4	157	1	0	0	0	0	0	0	0	1	17366	1335	47	3		3	WIPF3	7	29874394	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	8116896	29874394	129264269	83	20174											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	31855598	31855599	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PDE1C	NM_001191058	exon16	c.1932_1933del	p.644_645del	GGTTGTCACTTTT	.	161	48	112	0	.	94	-	31855599	CA	-	31855598	7	5	157	1	0	1	0	1	0	0	0	0	11635	826	29	0	163	0	PDE1C	7	31855598	Frame_Shift_Del	DEL	CA	TCGA-G3-A7M5-01A-11D-A33Q-10	1981204	31855598	127283065	84	20175											
BLVRA	644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43840096	43840096	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	BLVRA	NM_001253823	exon7	c.T385A	p.L129M	GAACTCTTGATGG	.	108	40	82	1	.	91	A	43840096	T	A	43840096	3	1	157	1	0	0	0	0	1	0	0	0	1451	1606	56	4	403	4	BLVRA	7	43840096	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	11984498	43840096	115298567	85	20176											
ZNF479	90827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	57194367	57194367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF479	NM_033273	exon3	c.T98A	p.L33Q	CAATCCAGGCATT	.	468	122	326	0	.	72	T	57194367	A	T	57194367	3	4	157	1	0	0	0	0	1	0	0	0	17930	188	7	4	1488	4	ZNF479	7	57194367	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	13354271	57194367	101944296	86	20177											
RABGEF1	27342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66270375	66270375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RABGEF1	NM_014504	exon8	c.A1069T	p.T357S	TATTTCACCAATC	.	82	20	50	0	.	228	T	66270375	A	T	66270375	3	4	157	1	0	0	0	0	1	0	0	0	12966	159	6	4	1095	4	RABGEF1	7	66270375	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	9076008	66270375	92868288	87	20178											
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71142287	71142287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	WBSCR17	NM_022479	exon9	c.C1496A	p.P499Q	GGGGACCACAGGT	.	103	56	64	0	.	96	A	71142287	C	A	71142287	3	1	157	1	0	0	0	0	1	0	0	0	17261	594	21	3	1530	3	WBSCR17	7	71142287	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	4871912	71142287	87996376	88	20179											
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82582709	82582709	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PCLO	NM_014510	exon5	c.A7560T	p.P2520P	AGTTGTTGGAAGC	.	117	19	88	1	.	29	A	82582709	T	A	82582709	2	1	157	1	0	0	0	0	0	0	0	1	11583	1799	63	4		4	PCLO	7	82582709	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	11440422	82582709	76555954	89	20180											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94029552	94029552	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	COL1A2	NM_000089	exon5	c.A177T	p.T59T	TCCCACAGGCCCT	.	123	67	81	0	.	521	T	94029552	A	T	94029552	2	4	157	1	0	0	0	0	0	0	0	1	3678	175	7	4		4	COL1A2	7	94029552	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	11446843	94029552	65109111	90	20181											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100348276	100348276	+	RNA	SNP	C	C	T	rs201666374		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZAN	.	.	.	.	GGCTGACGAGTTC	.	139	39	84	1	C|0.998;T|0.002	142	T	100348276	C	T	100348276	1	4	157	0	1	0	0	0	0	0	0	0	17510	535	19	1		1	ZAN	7	100348276	RNA	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	6318724	100348276	58790387	91	20182											
IQUB	154865	broad.mit.edu;mdanderson.org	37	7	123097530	123097530	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IQUB	NM_178827	exon12	c.A2098T	p.R700X	TCCATCTGACCAT	.	122	53	93	1	.	156	A	123097530	T	A	123097530	4	1	157	1	0	0	0	0	0	1	0	0	7820	1588	55	4	285	4	IQUB	7	123097530	Nonsense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	22749254	123097530	36041133	92	20183											
OR2F2	135948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143633139	143633139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR2F2	NM_001004685	exon1	c.814delA	p.K272fs	CAAGAGAAGCTGA	.	151	87	92	0	.	94	-	143633139	A	-	143633139	7	5	157	1	0	1	0	1	0	0	0	0	10997	247	9	0	816	0	OR2F2	7	143633139	Frame_Shift_Del	DEL	A	TCGA-G3-A7M5-01A-11D-A33Q-10	20535609	143633139	15505524	93	20184											
LRRC61	65999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034126	150034126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRRC61	NM_023942	exon2	c.A176G	p.D59G	GGCTGGACCTATC	.	38	17	26	0	.	90	G	150034126	A	G	150034126	3	3	157	1	0	0	0	0	1	0	0	0	9017	275	10	2	178	2	LRRC61	7	150034126	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	6400987	150034126	9104537	94	20185											
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73480433	73480433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KCNB2	NM_004770	exon2	c.A464T	p.E155V	GGCGAGAGGCAGA	.	103	39	72	0	.	158	T	73480433	A	T	73480433	3	4	157	1	0	0	0	0	1	0	0	0	8013	304	11	4	466	4	KCNB2	8	73480433	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		73480433	72883589	95	20186											
TRMT12	55039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125464081	125464081	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TRMT12	NM_017956	exon1	c.A913T	p.R305W	GCAGATAGGGTGA	.	60	24	45	0	.	226	T	125464081	A	T	125464081	3	4	157	1	0	0	0	0	1	0	0	0	16561	411	15	4	915	4	TRMT12	8	125464081	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	51983648	125464081	20899941	96	20187											
DENND4C	55667	broad.mit.edu;bcgsc.ca	37	9	19316784	19316784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DENND4C	NM_017925	exon12	c.C1754T	p.T585I	CAATCACAGAGGC	.	59	7	66	0	.	92	T	19316784	C	T	19316784	3	4	157	1	0	0	0	0	1	0	0	0	4435	478	17	3	1076	3	DENND4C	9	19316784	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10		19316784	121896647	97	20188											
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95232978	95232978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ASPN	NM_001193335	exon3	c.T360A	p.N120K	AAAATCATTTTCT	.	72	42	94	0	.	514	T	95232978	A	T	95232978	3	4	157	1	0	0	0	0	1	0	0	0	1057	214	8	4	806	4	ASPN	9	95232978	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	75916194	95232978	45980453	98	20189											
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	96079849	96079849	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	WNK2	NM_006648	exon28	c.G6564A	p.A2188A	CCCAGCGCCCGGC	.	24	15	45	0	.	765	A	96079849	G	A	96079849	2	1	157	1	0	0	0	0	0	0	0	1	17375	1074	38	1		1	WNK2	9	96079849	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	846871	96079849	45133582	99	20190											
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101777823	101777823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	COL15A1	NM_001855	exon10	c.T1478C	p.M493T	CCACCATGGCCCC	.	30	25	46	0	.	96	C	101777823	T	C	101777823	3	2	157	1	0	0	0	0	1	0	0	0	3672	1464	51	2	1516	2	COL15A1	9	101777823	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	5697974	101777823	39435608	100	20191											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132636872	132636872	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	USP20	NM_001008563	exon18	c.A1758T	p.L586L	TCACCTAAAGCGC	.	62	44	93	0	.	658	T	132636872	A	T	132636872	2	4	157	1	0	0	0	0	0	0	0	1	17049	349	13	4		4	USP20	9	132636872	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	30859049	132636872	8576559	101	20192											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24813464	24813464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIAA1217	NM_019590	exon13	c.C2669G	p.S890C	AGAGCTCCCCTGT	.	46	21	47	0	.	98	G	24813464	C	G	24813464	3	3	157	1	0	0	0	0	1	0	0	0	8216	855	30	4	2719	4	KIAA1217	10	24813464	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10		24813464	110721283	102	20193											
FAM21C	253725	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	46272808	46272808	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	FAM21C,NS,carcinoma,-2	FAM21C	NM_015262	exon22	c.A2230T	p.K744X	GTGGATAAGAAGG	.	389	157	384	0	.	91	T	46272808	A	T	46272808	4	4	157	1	0	0	0	0	0	1	0	0	5542	363	13	4	2316	4	FAM21C	10	46272808	Nonsense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	21459344	46272808	89261939	103	20194											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55912909	55912909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PCDH15	NM_001142763	exon15	c.T1750A	p.Y584N	GTGCGTAAGTCCG	.	88	18	88	0	.	193	T	55912909	A	T	55912909	3	4	157	1	0	0	0	0	1	0	0	0	11511	362	13	4	5831	4	PCDH15	10	55912909	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	9640101	55912909	79621838	104	20195											
RHOBTB1	9886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	62647978	62647978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RHOBTB1	NM_014836	exon6	c.C1448T	p.T483M	GAGAACGTTCCCT	.	70	35	77	0	.	228	A	62647978	G	A	62647978	3	1	157	1	0	0	0	0	1	0	0	0	13333	1145	40	1	666	1	RHOBTB1	10	62647978	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	6735069	62647978	72886769	105	20196											
JMJD1C	221037	broad.mit.edu;bcgsc.ca	37	10	64975367	64975367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	JMJD1C	NM_032776	exon6	c.768delT	p.I256fs	AATGCCAATATTT	.	71	9	81	0	.	275	-	64975367	A	-	64975367	7	5	157	1	0	1	0	1	0	0	0	0	7950	126	5	0	6938	0	JMJD1C	10	64975367	Frame_Shift_Del	DEL	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2327389	64975367	70559380	106	20197											
DDX21	9188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70730090	70730090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DDX21	NM_004728	exon8	c.A1370T	p.N457I	CCCAGAATTCAGC	.	91	14	73	0	.	228	T	70730090	A	T	70730090	3	4	157	1	0	0	0	0	1	0	0	0	4349	101	4	4	1400	4	DDX21	10	70730090	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	5754723	70730090	64804657	107	20198											
CNNM1	26507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	101124744	101124744	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CNNM1	NM_020348	exon6	c.2161delG	p.G721fs	CTGGCTGGATCTT	.	51	35	57	0	.	68	-	101124744	G	-	101124744	7	5	157	1	0	1	0	1	0	0	0	0	3612	1349	47	0	2183	0	CNNM1	10	101124744	Frame_Shift_Del	DEL	G	TCGA-G3-A7M5-01A-11D-A33Q-10	30394654	101124744	34410003	108	20199											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115959029	115959029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TDRD1	NM_198795	exon4	c.T482C	p.L161S	CCTCCTTAGGACC	.	161	86	150	0	.	90	C	115959029	T	C	115959029	3	2	157	1	0	0	0	0	1	0	0	0	15727	1764	61	2	492	2	TDRD1	10	115959029	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	14834285	115959029	19575718	109	20200											
VWA2	340706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116048949	116048949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VWA2	NM_001272046	exon12	c.G1823T	p.G608V	GGGTGGGCTCAGC	.	30	15	45	0	.	156	T	116048949	G	T	116048949	3	4	157	1	0	0	0	0	1	0	0	0	17236	1203	42	3	1865	3	VWA2	10	116048949	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	89920	116048949	19485798	110	20201											
OR56B1	387748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5758461	5758461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR56B1	NM_001005180	exon1	c.T715A	p.S239T	CTGAACTCAGCTG	.	53	24	56	0	.	69	A	5758461	T	A	5758461	3	1	157	1	0	0	0	0	1	0	0	0	11137	1551	54	4	717	4	OR56B1	11	5758461	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10		5758461	129248055	111	20202											
MICAL2	9645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	12265545	12265545	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MICAL2	NM_014632	exon21	c.C2670T	p.L890L	ACTACTCTCTAAA	.	133	10	112	0	.	92	T	12265545	C	T	12265545	2	4	157	1	0	0	0	0	0	0	0	1	9570	900	32	3		3	MICAL2	11	12265545	Silent	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	6507084	12265545	122740971	112	20203											
MRGPRX2	117194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19077115	19077115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MRGPRX2	NM_054030	exon2	c.T835A	p.Y279N	AGAAGTAAATGAT	.	81	28	77	0	.	91	T	19077115	A	T	19077115	3	4	157	1	0	0	0	0	1	0	0	0	9767	362	13	4	161	4	MRGPRX2	11	19077115	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	6811570	19077115	115929401	113	20204											
OR4X1	390113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	48285788	48285788	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR4X1	NM_001004726	exon1	c.A376T	p.K126X	ATCTGCAAGCCCT	.	94	33	70	0	.	71	T	48285788	A	T	48285788	4	4	157	1	0	0	0	0	0	1	0	0	11084	131	5	4	378	4	OR4X1	11	48285788	Nonsense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	29208673	48285788	86720728	114	20205											
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371245	55371245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR4C11	NM_001004700	exon1	c.G605A	p.G202E	ATTGCCCCACTGT	.	161	25	115	0	.	69	T	55371245	C	T	55371245	3	4	157	1	0	0	0	0	1	0	0	0	11045	623	22	3	329	3	OR4C11	11	55371245	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	7085457	55371245	79635271	115	20206											
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55433436	55433436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR4C6	NM_001004704	exon1	c.T794C	p.I265T	ACCCCATAGACAA	.	74	27	76	0	.	70	C	55433436	T	C	55433436	3	2	157	1	0	0	0	0	1	0	0	0	11052	1406	49	2	796	2	OR4C6	11	55433436	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	62191	55433436	79573080	116	20207											
OR5AS1	219447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55798176	55798176	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR5AS1	NM_001001921	exon1	c.T282A	p.P94P	CTCTCCTTATGGG	.	75	35	46	0	.	73	A	55798176	T	A	55798176	2	1	157	1	0	0	0	0	0	0	0	1	11146	1596	56	4		4	OR5AS1	11	55798176	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	364740	55798176	79208340	117	20208											
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55905001	55905001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR8J3	NM_001004064	exon1	c.A194T	p.H65L	GCTAGATGTCTCA	.	133	57	94	0	.	70	A	55905001	T	A	55905001	3	1	157	1	0	0	0	0	1	0	0	0	11242	1464	51	4	755	4	OR8J3	11	55905001	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	106825	55905001	79101515	118	20209											
OR5M10	390167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56344760	56344760	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_001004741	exon1	c.T438A	p.T146T	AGGCACAGTGACC	.	157	60	117	0	.	.	T	56344760	A	T	56344760	2	4	157	1	0	0	0	0	0	0	0	1	11173	175	7	4		4	OR5M10	11	56344760	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	439759	56344760	78661756	119	20210											
PRG3	10394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57147137	57147137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PRG3	NM_006093	exon3	c.T205A	p.C69S	CTTGACAGGCAGA	.	114	33	81	0	.	90	T	57147137	A	T	57147137	3	4	157	1	0	0	0	0	1	0	0	0	12480	188	7	4	488	4	PRG3	11	57147137	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	802377	57147137	77859379	120	20211											
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65391690	65391690	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PCNXL3	NM_032223	exon14	c.A2569T	p.S857C	GCGTACAGCCGTC	.	42	14	26	0	.	46	T	65391690	A	T	65391690	3	4	157	1	0	0	0	0	1	0	0	0	11593	188	7	4	2623	4	PCNXL3	11	65391690	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	8244553	65391690	69614826	121	20212											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105769114	105769114	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GRIA4	NM_001077244	exon7	c.A846T	p.L282L	GAAACTAGATCAG	.	173	72	151	0	.	230	T	105769114	A	T	105769114	2	4	157	1	0	0	0	0	0	0	0	1	6770	407	15	4		4	GRIA4	11	105769114	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	40377424	105769114	29237402	122	20213											
SCN3B	55800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123524465	123524465	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SCN3B	NM_018400	exon1	c.T45A	p.L15L	GTAGATAAGCACG	.	70	36	77	0	.	156	T	123524465	A	T	123524465	2	4	157	1	0	0	0	0	0	0	0	1	13919	349	13	4		4	SCN3B	11	123524465	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	17755351	123524465	11482051	123	20214											
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	129751605	129751629	+	Frame_Shift_Del	DEL	AAAAAAGAGCATCTTACCTCGACTT	AAAAAAGAGCATCTTACCTCGACTT	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	AAAAAAGAGCATCTTACCTCGACTT	AAAAAAGAGCATCTTACCTCGACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NFRKB	NM_006165	exon10	c.1386_1393del	p.462_465del	CCCTACAAAAAAG	.	86	11	81	0	.	93	-	129751629	AAAAAAGAGCATCTTACCTCGACTT	-	129751605	7	5	157	1	0	1	0	1	0	0	0	0	10384	145	5	0		0	NFRKB	11	129751605	Frame_Shift_Del	DEL	AAAAAAGAGCATCTTACCTCGACTT	TCGA-G3-A7M5-01A-11D-A33Q-10	6227140	129751605	5254911	124	20215											
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	20523005	20523005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PDE3A	NM_000921	exon1	c.G787T	p.A263S	CAGTCCGCGGAGG	.	37	22	29	0	.	94	T	20523005	G	T	20523005	3	4	157	1	0	0	0	0	1	0	0	0	11637	1087	38	1	789	1	PDE3A	12	20523005	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10		20523005	113328890	125	20216											
NR4A1	3164	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52452600	52452600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NR4A1	NM_001202233	exon8	c.G1708C	p.G570R	CTGTTGGGCAAAC	.	41	23	44	0	.	186	C	52452600	G	C	52452600	3	2	157	1	0	0	0	0	1	0	0	0	10632	1232	43	4	1691	4	NR4A1	12	52452600	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	31929595	52452600	81399295	126	20217											
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	71977559	71977560	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	.	.	.	p.S590*	ACATTTCCCCCAT	.	161	67	148	0	.	.	AA	71977560	CC	AA	71977559	4	1	157	1	0	0	0	0	0	1	0	0	8757	855	30	3	1839	3	LGR5	12	71977559	Nonsense_Mutation	DNP	CC	TCGA-G3-A7M5-01A-11D-A33Q-10	19524959	71977559	61874336	127	20218											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85554467	85554467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRRIQ1	NM_001079910	exon24	c.G4797T	p.Q1599H	GGTACAGCCCAGA	.	105	44	68	0	.	95	T	85554467	G	T	85554467	3	4	157	1	0	0	0	0	1	0	0	0	9029	962	34	3	4891	3	LRRIQ1	12	85554467	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	13576908	85554467	48297428	128	20219											
AMDHD1	144193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96360279	96360279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	AMDHD1	NM_152435	exon8	c.T1186G	p.S396A	ATCAATTCATCCC	.	75	18	37	0	.	90	G	96360279	T	G	96360279	3	3	157	1	0	0	0	0	1	0	0	0	567	1783	62	5	1216	5	AMDHD1	12	96360279	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	10805812	96360279	37491616	129	20220											
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113553065	113553065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RASAL1	NM_004658	exon12	c.C1008A	p.D336E	GTTGGGGTCCACT	.	153	40	93	0	.	229	T	113553065	G	T	113553065	3	4	157	1	0	0	0	0	1	0	0	0	13063	1252	44	3	1450	3	RASAL1	12	113553065	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	17192786	113553065	20298830	130	20221											
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122717409	122717409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VPS33A	NM_022916	exon12	c.G1547T	p.R516L	AGGATGCGGAGGA	.	118	41	83	0	.	91	A	122717409	C	A	122717409	3	1	157	1	0	0	0	0	1	0	0	0	17198	768	27	1	251	1	VPS33A	12	122717409	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	9164344	122717409	11134486	131	20222											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23910455	23910455	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SACS	NM_014363	exon10	c.A7560C	p.T2520T	AAATTCTGTGCCA	.	77	26	98	0	.	298	G	23910455	T	G	23910455	2	3	157	1	0	0	0	0	0	0	0	1	13804	1567	55	5		5	SACS	13	23910455	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10		23910455	91259423	132	20223											
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25043232	25043232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PARP4	NM_006437	exon17	c.A2063T	p.E688V	TGGGCTTCTTCCT	.	44	9	53	0	.	94	A	25043232	T	A	25043232	3	1	157	1	0	0	0	0	1	0	0	0	11463	1783	62	4	3183	4	PARP4	13	25043232	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	1132777	25043232	90126646	133	20224											
MTUS2	23281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29855851	29855851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MTUS2	NM_001033602	exon4	c.T2685A	p.F895L	AACCTTTGGGAAT	.	120	35	165	1	.	218	A	29855851	T	A	29855851	3	1	157	1	0	0	0	0	1	0	0	0	9966	1809	63	4	2699	4	MTUS2	13	29855851	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	4812619	29855851	85314027	134	20225											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39454462	39454462	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FREM2	NM_207361	exon24	c.A9048T	p.T3016T	CTATACAGTGAGA	.	45	18	85	0	.	100	T	39454462	A	T	39454462	2	4	157	1	0	0	0	0	0	0	0	1	6045	175	7	4		4	FREM2	13	39454462	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	9598611	39454462	75715416	135	20226											
POTEG	404785	broad.mit.edu;mdanderson.org	37	14	19553603	19553603	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	POTEG	NM_001005356	exon1	c.A187T	p.K63X	ATGGGCAAGTGGT	.	340	47	318	1	.	1	T	19553603	A	T	19553603	4	4	157	1	0	0	0	0	0	1	0	0	12266	131	5	4	189	4	POTEG	14	19553603	Nonsense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		19553603	87795937	136	20227											
POTEM	641455	broad.mit.edu;mdanderson.org	37	14	20020034	20020034	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_001145442	exon1	c.A187T	p.K63X	ACCACTTGCCCAT	.	334	32	326	0	.	.	A	20020034	T	A	20020034	4	1	157	1	0	0	0	0	0	1	0	0	12268	1821	63	4	1379	4	POTEM	14	20020034	Nonsense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	466431	20020034	87329506	137	20228											
TTC5	91875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20760207	20760207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TTC5	NM_138376	exon9	c.A1138C	p.I380L	CTCCAATGAGCAC	.	66	29	52	0	.	91	G	20760207	T	G	20760207	3	3	157	1	0	0	0	0	1	0	0	0	16708	1464	51	5	192	5	TTC5	14	20760207	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	740173	20760207	86589333	138	20229											
SLC10A1	6554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70245100	70245110	+	Frame_Shift_Del	DEL	AGCCCTTCTCC	AGCCCTTCTCC	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	AGCCCTTCTCC	AGCCCTTCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLC10A1	NM_003049	exon4	c.883_893del	p.295_298del	AGGAGAAGCCCTT	.	101	26	95	0	.	91	-	70245110	AGCCCTTCTCC	-	70245100	7	5	157	1	0	1	0	1	0	0	0	0	14373	72	3	0	164	0	SLC10A1	14	70245100	Frame_Shift_Del	DEL	AGCCCTTCTCC	TCGA-G3-A7M5-01A-11D-A33Q-10	49484893	70245100	37104440	139	20230											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70990228	70990228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ADAM20	NM_003814	exon2	c.A1397T	p.E466V	CCTTCTTCAACCA	.	130	47	127	0	.	226	A	70990228	T	A	70990228	3	1	157	1	0	0	0	0	1	0	0	0	242	1783	62	4	937	4	ADAM20	14	70990228	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	745128	70990228	36359312	140	20231											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95677202	95677202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CLMN	NM_024734	exon7	c.T623A	p.V208E	TCCTGCACCGCCA	.	85	37	68	0	.	90	T	95677202	A	T	95677202	3	4	157	1	0	0	0	0	1	0	0	0	3542	159	6	4	2413	4	CLMN	14	95677202	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	24686974	95677202	11672338	141	20232											
AK7	122481	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	96875253	96875253	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	AK7	NM_152327	exon4	c.G473A	p.W158X	TGACTTGGGCGCG	.	147	53	105	0	.	228	A	96875253	G	A	96875253	4	1	157	1	0	0	0	0	0	1	0	0	444	1357	47	3	487	3	AK7	14	96875253	Nonsense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	1198051	96875253	10474287	142	20233											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	34109120	34109120	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RYR3	NM_001036	exon75	c.10560delG	p.E3520fs	AACAGAGGAGTAT	.	112	42	94	0	.	520	-	34109120	G	-	34109120	7	5	157	1	0	1	0	1	0	0	0	0	13770	991	35	0	10858	0	RYR3	15	34109120	Frame_Shift_Del	DEL	G	TCGA-G3-A7M5-01A-11D-A33Q-10		34109120	68422272	143	20234											
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42729475	42729475	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZFP106	NM_022473	exon10	c.A4632G	p.L1544L	GGTATATAGCAAG	.	91	23	81	0	.	515	C	42729475	T	C	42729475	2	2	157	1	0	0	0	0	0	0	0	1	17634	1393	49	2		2	ZFP106	15	42729475	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	8620355	42729475	59801917	144	20235											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	48058329	48058329	+	Nonsense_Mutation	SNP	T	T	A	rs113249348	alternate_allele	TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SEMA6D	NM_153617	exon15	c.T1596A	p.Y532X	CCCGTATTGTGGC	.	125	13	98	0	T|0.500;C|0.500	138	A	48058329	T	A	48058329	4	1	157	1	0	0	0	0	0	1	0	0	14042	1500	52	4	1654	4	SEMA6D	15	48058329	Nonsense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	5328854	48058329	54473063	145	20236											
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48513119	48513119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLC12A1	NM_001184832	exon4	c.T554A	p.V185E	CACAGGTAAGATG	.	135	58	104	0	.	24	A	48513119	T	A	48513119	3	1	157	1	0	0	0	0	1	0	0	0	14382	1652	57	4	564	4	SLC12A1	15	48513119	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	454790	48513119	54018273	146	20237											
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65621468	65621468	+	Missense_Mutation	SNP	C	C	T	rs149849455		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IGDCC3	NM_004884	exon14	c.G2224A	p.A742T	ACGGAGCGGGGGC	.	67	37	62	0	C|1.000;T|0.000	93	T	65621468	C	T	65621468	3	4	157	1	0	0	0	0	1	0	0	0	7568	768	27	1	224	1	IGDCC3	15	65621468	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	17108349	65621468	36909924	147	20238											
EDC3	80153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74925259	74925259	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	EDC3	NM_001142444	exon8	c.C1221T	p.V407V	GTTGATGACCAGG	.	85	23	67	0	.	91	A	74925259	G	A	74925259	2	1	157	1	0	0	0	0	0	0	0	1	4907	1277	45	3		3	EDC3	15	74925259	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	9303791	74925259	27606133	148	20239											
MAN2C1	4123	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75659938	75659938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MAN2C1	NM_001256494	exon3	c.C265G	p.P89A	CCTCTGGGATGGT	.	67	30	63	1	.	90	C	75659938	G	C	75659938	3	2	157	1	0	0	0	0	1	0	0	0	9218	1232	43	4	2953	4	MAN2C1	15	75659938	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	734679	75659938	26871454	149	20240											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89402447	89402447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACAN	NM_001135	exon12	c.G6631A	p.V2211I	CTGGGCGTTGTCA	.	130	53	111	0	.	25	A	89402447	G	A	89402447	3	1	157	1	0	0	0	0	1	0	0	0	117	1145	40	1	6673	1	ACAN	15	89402447	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	13742509	89402447	13128945	150	20241											
FURIN	5045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91424605	91424605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FURIN	NM_002569	exon16	c.A1882G	p.S628G	CACTATAGCACCG	.	73	16	68	0	.	1083	G	91424605	A	G	91424605	3	3	157	1	0	0	0	0	1	0	0	0	6099	420	15	2	1940	2	FURIN	15	91424605	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2022158	91424605	11106787	151	20242											
SEPT12	124404	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	4827877	4827877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SEPT12	NM_144605	exon10	c.C998G	p.A333G	GGGGAGGCCGGGG	.	112	56	127	0	.	91	C	4827877	G	C	4827877	3	2	157	1	0	0	0	0	1	0	0	0	14062	1203	42	4	82	4	SEPT12	16	4827877	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10		4827877	85526876	152	20243											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14304134	14304134	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MKL2	NM_014048	exon4	c.A189G	p.R63R	GACGAGAGAACAA	.	86	39	91	0	.	95	G	14304134	A	G	14304134	2	3	157	1	0	0	0	0	0	0	0	1	9602	301	11	2		2	MKL2	16	14304134	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	9476257	14304134	76050619	153	20244											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21071601	21071601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DNAH3	NM_017539	exon26	c.T3797A	p.I1266N	GCTTCAATCCCAA	.	64	11	127	0	.	167	T	21071601	A	T	21071601	3	4	157	1	0	0	0	0	1	0	0	0	4603	101	4	4	8700	4	DNAH3	16	21071601	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	6767467	21071601	69283152	154	20245											
HS3ST4	9951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	26147301	26147301	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	HS3ST4	NM_006040	exon2	c.T1103A	p.M368K	GGGAAATGGCCAA	.	135	70	121	0	.	67	A	26147301	T	A	26147301	3	1	157	1	0	0	0	0	1	0	0	0	7367	1464	51	4	1109	4	HS3ST4	16	26147301	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	5075700	26147301	64207452	155	20246											
MT1E	4493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56660821	56660821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MT1E	NM_175617	exon3	c.G124T	p.A42S	GGCTGTGCCAAGT	.	39	23	43	0	.	90	T	56660821	G	T	56660821	3	4	157	1	0	0	0	0	1	0	0	0	9899	1319	46	3	134	3	MT1E	16	56660821	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	30513520	56660821	33693932	156	20247											
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84270675	84270675	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KCNG4	NM_172347	exon2	c.C417T	p.C139C	CAGCGCGCACATC	.	68	33	64	1	.	93	A	84270675	G	A	84270675	2	1	157	1	0	0	0	0	0	0	0	1	8030	1079	38	1		1	KCNG4	16	84270675	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	27609854	84270675	6084078	157	20248											
KIAA0513	9764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	85114999	85114999	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIAA0513	NM_014732	exon9	c.980+1G>A	.	TACCAGGTAGGAG	.	73	30	64	0	.	135	A	85114999	G	A	85114999	5	1	157	1	0	0	0	0	0	0	1	0	8181	1275	44	3	1011	3	KIAA0513	16	85114999	Splice_Site	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	844324	85114999	5239754	158	20249											
ALKBH5	54890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18088100	18088100	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ALKBH5	NM_017758	exon1	c.C543T	p.V181V	CCGCGTCATCCCC	.	81	37	47	0	.	90	T	18088100	C	T	18088100	2	4	157	1	0	0	0	0	0	0	0	1	530	813	29	3		3	ALKBH5	17	18088100	Silent	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10		18088100	63107110	159	20250											
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	32964875	32964875	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TMEM132E	NM_207313	exon10	c.T2579A	p.L860Q	GAGAGCTGTCGCC	.	33	18	28	0	.	68	A	32964875	T	A	32964875	3	1	157	1	0	0	0	0	1	0	0	0	16045	1580	55	4	2617	4	TMEM132E	17	32964875	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	14876775	32964875	48230335	160	20251											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38937443	38937443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KRT27	NM_181537	exon2	c.T524A	p.L175Q	TACTTTAGTCTGA	.	100	29	92	0	.	90	T	38937443	A	T	38937443	3	4	157	1	0	0	0	0	1	0	0	0	8464	420	15	4	883	4	KRT27	17	38937443	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	5972568	38937443	42257767	161	20252											
KCNJ16	3773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68128987	68128987	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KCNJ16	NM_001270422	exon6	c.T759A	p.I253I	AACTATTGTCCAT	.	83	41	62	0	.	516	A	68128987	T	A	68128987	2	1	157	1	0	0	0	0	0	0	0	1	8050	1800	63	4		4	KCNJ16	17	68128987	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	29191544	68128987	13066223	162	20253											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6978215	6978215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LAMA1	NM_005559	exon43	c.T6170A	p.L2057Q	TCCTGCAGAAGCT	.	64	30	75	0	.	149	T	6978215	A	T	6978215	3	4	157	1	0	0	0	0	1	0	0	0	8605	188	7	4	3141	4	LAMA1	18	6978215	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		6978215	71099033	163	20254											
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3784140	3784140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MATK	NM_002378	exon5	c.C347T	p.P116L	AGCTTGGGGTCTG	.	41	21	35	0	.	521	A	3784140	G	A	3784140	3	1	157	1	0	0	0	0	1	0	0	0	9332	1232	43	3	1219	3	MATK	19	3784140	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10		3784140	55344843	164	20255											
KDM4B	23030	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5144869	5144869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KDM4B	NM_015015	exon21	c.T2977A	p.Y993N	AACCTCTACAAGG	.	127	48	96	1	.	226	A	5144869	T	A	5144869	3	1	157	1	0	0	0	0	1	0	0	0	8129	1522	53	4	3051	4	KDM4B	19	5144869	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	1360729	5144869	53984114	165	20256											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062327	9062327	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MUC16	NM_024690	exon3	c.A25119T	p.S8373S	TGTCTCTGAGTCA	.	66	25	68	0	.	566	A	9062327	T	A	9062327	2	1	157	1	0	0	0	0	0	0	0	1	9973	1567	55	4		4	MUC16	19	9062327	Silent	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	3917458	9062327	50066656	166	20257											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9082590	9082590	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MUC16	NM_024690	exon1	c.T9225A	p.A3075A	TGTCAGAGCTGAA	.	155	66	103	0	.	566	T	9082590	A	T	9082590	2	4	157	1	0	0	0	0	0	0	0	1	9973	291	11	4		4	MUC16	19	9082590	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	20263	9082590	50046393	167	20258											
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20307961	20307961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF486	NM_052852	exon4	c.A442T	p.T148S	TTGACAACTACCC	.	249	94	174	0	.	47	T	20307961	A	T	20307961	3	4	157	1	0	0	0	0	1	0	0	0	17936	43	2	4	456	4	ZNF486	19	20307961	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	11225371	20307961	38821022	168	20259											
ZNF568	374900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37440867	37440867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF568	NM_198539	exon7	c.T812A	p.I271N	AGAAAATTCATAC	.	112	49	80	0	.	136	A	37440867	T	A	37440867	3	1	157	1	0	0	0	0	1	0	0	0	17996	1493	52	4	830	4	ZNF568	19	37440867	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	17132906	37440867	21688116	169	20260											
PLD3	23646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40877640	40877640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLD3	NM_012268	exon9	c.A739T	p.I247F	ACCAAGATCTTTG	.	86	31	74	0	.	228	T	40877640	A	T	40877640	3	4	157	1	0	0	0	0	1	0	0	0	12047	333	12	4	765	4	PLD3	19	40877640	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	3436773	40877640	18251343	170	20261											
CD177	57126	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	43864551	43864551	+	RNA	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CD177	.	.	.	.	CTCCTAGATGTAG	.	87	31	82	0	.	22	A	43864551	G	A	43864551	1	1	157	0	1	0	0	0	0	0	0	0	2971	942	33	3		3	CD177	19	43864551	RNA	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	2986911	43864551	15264432	171	20262											
LIG1	3978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	48643272	48643273	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	.	.	.	p.G348F	CCCACGCCAAGCT	.	85	27	54	0	.	.	AA	48643273	CC	AA	48643272	3	1	157	1	0	0	0	0	1	0	0	0	8781	739	26	3	1784	3	LIG1	19	48643272	Missense_Mutation	DNP	CC	TCGA-G3-A7M5-01A-11D-A33Q-10	4778721	48643272	10485711	172	20263											
ASPDH	554235	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51015948	51015948	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ASPDH	NM_001114598	exon4	c.C402T	p.I134I	TCTCCTGATGTCC	.	85	13	81	0	.	90	A	51015948	G	A	51015948	2	1	157	1	0	0	0	0	0	0	0	1	1051	1280	45	3		3	ASPDH	19	51015948	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	2372676	51015948	8113035	173	20264											
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54074888	54074888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF331	NM_001253801	exon4	c.G40A	p.D14N	GCCATAGACTTTT	.	96	34	75	2	.	663	A	54074888	G	A	54074888	3	1	157	1	0	0	0	0	1	0	0	0	17846	942	33	3	46	3	ZNF331	19	54074888	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	3058940	54074888	5054095	174	20265											
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54308582	54308582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NLRP12	NM_144687	exon5	c.A2366C	p.E789A	CAAAGCAGCATCA	.	55	9	50	0	.	211	G	54308582	A	G	54308582	3	3	157	1	0	0	0	0	1	0	0	0	10474	188	7	2	843	2	NLRP12	19	54308582	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	233694	54308582	4820401	175	20266											
KIR2DL3	3804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55263853	55263853	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIR2DL3	NM_015868	exon8	c.A908T	p.Y303F	TGACATATGCACA	.	130	66	113	0	.	92	T	55263853	A	T	55263853	3	4	157	1	0	0	0	0	1	0	0	0	8317	449	16	4	938	4	KIR2DL3	19	55263853	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	955271	55263853	3865130	176	20267											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56538847	56538847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NLRP5	NM_153447	exon7	c.G1248T	p.K416N	AGAGAAGCTCAAG	.	90	20	58	0	.	162	T	56538847	G	T	56538847	3	4	157	1	0	0	0	0	1	0	0	0	10480	962	34	3	1274	3	NLRP5	19	56538847	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	1274994	56538847	2590136	177	20268											
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56953879	56953879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF667	NM_022103	exon5	c.A485T	p.H162L	TTCTGATGAAGTT	.	139	60	109	0	.	91	A	56953879	T	A	56953879	3	1	157	1	0	0	0	0	1	0	0	0	18071	1464	51	4	1351	4	ZNF667	19	56953879	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	415032	56953879	2175104	178	20269											
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5904188	5904188	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CHGB	NM_001819	exon4	c.G1398A	p.E466E	GAAAGAGCTGGAC	.	92	40	55	0	.	96	A	5904188	G	A	5904188	2	1	157	1	0	0	0	0	0	0	0	1	3339	962	34	3		3	CHGB	20	5904188	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10		5904188	57121332	179	20270											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8713899	8713899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLCB1	NM_015192	exon19	c.C1903G	p.P635A	ATGCAAATAAATA	.	110	56	90	0	.	297	G	8713899	A	G	8713899	3	3	157	1	0	0	0	0	1	0	0	0	12027	101	4	2	1977	2	PLCB1	20	8713899	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	2809711	8713899	54311621	180	20271											
CRNKL1	51340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	20033133	20033133	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CRNKL1	NM_016652	exon2	c.A337T	p.R113X	GACCTCTCGCTTG	.	100	34	81	0	.	137	A	20033133	T	A	20033133	4	1	157	1	0	0	0	0	0	1	0	0	3891	1559	54	4	2265	4	CRNKL1	20	20033133	Nonsense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	11319234	20033133	42992387	181	20272											
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20563863	20563863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RALGAPA2	NM_020343	exon20	c.T2538A	p.S846R	GTTGGTACTTTCA	.	88	41	77	0	.	24	T	20563863	A	T	20563863	3	4	157	1	0	0	0	0	1	0	0	0	13014	388	14	4	3163	4	RALGAPA2	20	20563863	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	530730	20563863	42461657	182	20273											
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130663	45130663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF334	NM_018102	exon5	c.G1315A	p.G439R	ATTTTCCACATTG	.	87	28	55	0	.	92	T	45130663	C	T	45130663	3	4	157	1	0	0	0	0	1	0	0	0	17848	603	21	3	731	3	ZNF334	20	45130663	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	24566800	45130663	17894857	183	20274											
RNF114	55905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48568649	48568649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RNF114	NM_018683	exon6	c.G658T	p.V220L	AATCAGGTGTTGC	.	71	9	58	0	.	91	T	48568649	G	T	48568649	3	4	157	1	0	0	0	0	1	0	0	0	13429	1261	44	3	680	3	RNF114	20	48568649	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	3437986	48568649	14456871	184	20275											
IGSF5	150084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41151111	41151111	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IGSF5	NM_001080444	exon5	c.A813T	p.L271L	TGGACTAGCAGGC	.	81	34	49	0	.	68	T	41151111	A	T	41151111	2	4	157	1	0	0	0	0	0	0	0	1	7602	407	15	4		4	IGSF5	21	41151111	Silent	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		41151111	6978784	185	20276											
FTCD	10841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	47566181	47566181	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FTCD	NM_206965	exon8	c.967delG	p.E323fs	CTCACTCGATGAT	.	113	51	100	0	.	92	-	47566181	C	-	47566181	7	5	157	1	0	1	0	1	0	0	0	0	6081	898	31	0	686	0	FTCD	21	47566181	Frame_Shift_Del	DEL	C	TCGA-G3-A7M5-01A-11D-A33Q-10	6415070	47566181	563714	186	20277											
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29130468	29130468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CHEK2	NM_145862	exon2	c.A242C	p.E81A	TGGTCCTCAGGTT	.	72	15	96	0	.	1515	G	29130468	T	G	29130468	3	3	157	1	0	0	0	0	1	0	0	0	3335	1551	54	5	1578	5	CHEK2	22	29130468	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10		29130468	22174098	187	20278											
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35812706	35812706	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MCM5	NM_006739	exon12	c.G1489C	p.E497Q	TGGGATGAGACGA	.	63	25	69	0	.	228	C	35812706	G	C	35812706	3	2	157	1	0	0	0	0	1	0	0	0	9390	1291	45	4	1531	4	MCM5	22	35812706	Missense_Mutation	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	6682238	35812706	15491860	188	20279											
PHEX	5251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22056646	22056646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PHEX	NM_000444	exon2	c.A178C	p.I60L	GAATGCATCGAAG	.	38	28	39	0	.	132	C	22056646	A	C	22056646	3	2	157	1	0	0	0	0	1	0	0	0	11819	217	8	5	184	5	PHEX	23	22056646	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10		22056646	133213914	189	20280											
KLHL15	80311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24006693	24006693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KLHL15	NM_030624	exon4	c.G1160T	p.R387I	CTGGTTCTGCCTG	.	102	91	97	0	.	131	A	24006693	C	A	24006693	3	1	157	1	0	0	0	0	1	0	0	0	8371	913	32	3	658	3	KLHL15	23	24006693	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	1950047	24006693	131263867	190	20281											
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27999289	27999289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DCAF8L1	NM_001017930	exon1	c.A163T	p.R55W	CATCCCTGGTATC	.	108	91	93	0	.	112	A	27999289	T	A	27999289	3	1	157	1	0	0	0	0	1	0	0	0	4277	1579	55	4	1643	4	DCAF8L1	23	27999289	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	3992596	27999289	127271271	191	20282											
TAB3	257397	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30870987	30870987	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TAB3	NM_152787	exon7	c.C1618T	p.L540L	GCTCTAGCTCCTC	.	41	13	33	0	.	131	A	30870987	G	A	30870987	2	1	157	1	0	0	0	0	0	0	0	1	15494	962	34	3		3	TAB3	23	30870987	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	2871698	30870987	124399573	192	20283											
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50053768	50053768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CCNB3	NM_033031	exon5	c.A2599T	p.S867C	AAGCCCAGCATTG	.	111	94	84	0	.	482	T	50053768	A	T	50053768	3	4	157	1	0	0	0	0	1	0	0	0	2914	188	7	4	2613	4	CCNB3	23	50053768	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	19182781	50053768	105216792	193	20284											
PCDH11X	27328	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91132752	91132752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PCDH11X	NM_001168363	exon2	c.C1513A	p.L505I	TACCTGCTAGGCC	.	218	175	159	2	.	193	A	91132752	C	A	91132752	3	1	157	1	0	0	0	0	1	0	0	0	11508	796	28	3	1519	3	PCDH11X	23	91132752	Missense_Mutation	SNP	C	TCGA-G3-A7M5-01A-11D-A33Q-10	41078984	91132752	64137808	194	20285											
GPRASP2	114928	broad.mit.edu;bcgsc.ca	37	X	101970491	101970491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GPRASP2	NM_138437	exon4	c.A694G	p.T232A	ACCTCTACAGCGT	.	93	6	67	0	.	131	G	101970491	A	G	101970491	3	3	157	1	0	0	0	0	1	0	0	0	6723	391	14	2	696	2	GPRASP2	23	101970491	Missense_Mutation	SNP	A	TCGA-G3-A7M5-01A-11D-A33Q-10	10837739	101970491	53300069	195	20286											
GABRA3	2556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151336877	151336877	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GABRA3	NM_000808	exon10	c.C1302G	p.P434P	GGCCTTGGGTGAA	.	273	71	127	0	.	131	C	151336877	G	C	151336877	2	2	157	1	0	0	0	0	0	0	0	1	6162	1335	47	4		4	GABRA3	23	151336877	Silent	SNP	G	TCGA-G3-A7M5-01A-11D-A33Q-10	49366386	151336877	3933683	196	20287											
MECP2	4204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153295883	153295883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MECP2	NM_001110792	exon3	c.A1432T	p.M478L	TTGGCATGGAGGA	.	116	52	48	0	.	226	A	153295883	T	A	153295883	3	1	157	1	0	0	0	0	1	0	0	0	9423	1464	51	4	68	4	MECP2	23	153295883	Missense_Mutation	SNP	T	TCGA-G3-A7M5-01A-11D-A33Q-10	1959006	153295883	1974677	197	20288											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22915685	22915685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EPHA8	NM_020526	exon5	c.C1301T	p.T434I	ACATCACCACGAA	.	99	28	104	0	.	1380	T	22915685	C	T	22915685	3	4	158	1	0	0	0	0	1	0	0	0	5173	507	18	3	1319	3	EPHA8	1	22915685	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10		22915685	226334936	1	20289											
C1QC	714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22970634	22970634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C1QC	NM_001114101	exon2	c.G118A	p.G40S	ATGCCCGGCCTGC	.	99	37	115	0	.	90	A	22970634	G	A	22970634	3	1	158	1	0	0	0	0	1	0	0	0	1957	1116	39	1	120	1	C1QC	1	22970634	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	54949	22970634	226279987	2	20290											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34258042	34258042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CSMD2	NM_052896	exon11	c.A1412G	p.Q471R	GTCTTCTGGTCCC	.	113	38	151	0	.	103	C	34258042	T	C	34258042	3	2	158	1	0	0	0	0	1	0	0	0	3945	1580	55	2	9287	2	CSMD2	1	34258042	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	11287408	34258042	214992579	3	20291											
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36564429	36564429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	COL8A2	NM_005202	exon2	c.G853A	p.A285T	CTGCTGCCCCTGG	.	57	17	62	0	.	90	T	36564429	C	T	36564429	3	4	158	1	0	0	0	0	1	0	0	0	3706	739	26	3	1262	3	COL8A2	1	36564429	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	2306387	36564429	212686192	4	20292											
GRIK3	2899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37270816	37270816	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GRIK3	NM_000831	exon15	c.C2337A	p.I779I	GATGGTGATCTTG	.	34	5	59	0	.	158	T	37270816	G	T	37270816	2	4	158	1	0	0	0	0	0	0	0	1	6775	1280	45	3		3	GRIK3	1	37270816	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	706387	37270816	211979805	5	20293											
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109241956	109241956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PRPF38B	NM_018061	exon6	c.C955G	p.R319G	AGATCCCGAAGTA	.	238	49	159	0	.	90	G	109241956	C	G	109241956	3	3	158	1	0	0	0	0	1	0	0	0	12568	644	23	4	977	4	PRPF38B	1	109241956	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	71971140	109241956	140008665	6	20294											
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549068	158549068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR10X1	NM_001004477	exon1	c.A622G	p.S208G	GGTTACTGTCTAT	.	273	57	161	0	.	69	C	158549068	T	C	158549068	3	2	158	1	0	0	0	0	1	0	0	0	10922	1580	55	2	353	2	OR10X1	1	158549068	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	49307112	158549068	90701553	7	20295											
XCL2	6846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168510343	168510343	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	XCL2	NM_003175	exon3	c.T192C	p.R64R	TAGGCCACGTTTG	.	169	22	107	0	.	91	G	168510343	A	G	168510343	2	3	158	1	0	0	0	0	0	0	0	1	17421	146	6	2		2	XCL2	1	168510343	Silent	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	9961275	168510343	80740278	8	20296											
GLUL	2752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182353689	182353689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GLUL	NM_001033056	exon7	c.A973G	p.I325V	GGGGAATGCGTAT	.	95	41	83	0	.	90	C	182353689	T	C	182353689	3	2	158	1	0	0	0	0	1	0	0	0	6478	1464	51	2	152	2	GLUL	1	182353689	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	13843346	182353689	66896932	9	20297											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	208219318	208219318	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PLXNA2	NM_025179	exon18	c.3400delG	p.D1134fs	TGGTGTCGTTGTA	.	170	132	198	0	.	92	-	208219318	C	-	208219318	7	5	158	1	0	1	0	1	0	0	0	0	12120	884	31	0	2344	0	PLXNA2	1	208219318	Frame_Shift_Del	DEL	C	TCGA-G3-A7M6-01A-11D-A33Q-10	25865629	208219318	41031303	10	20298											
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222802341	222802341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MIA3	NM_198551	exon4	c.C1779G	p.D593E	CAGAGACAGTGTG	.	131	23	98	0	.	98	G	222802341	C	G	222802341	3	3	158	1	0	0	0	0	1	0	0	0	9565	477	17	4	1793	4	MIA3	1	222802341	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	14583023	222802341	26448280	11	20299											
C1orf65	164127	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223568587	223568587	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C1orf65	NM_152610	exon1	c.T1770C	p.P590P	GCTCCCTCAGGCC	.	222	53	195	1	.	91	C	223568587	T	C	223568587	2	2	158	1	0	0	0	0	0	0	0	1	2055	1538	54	2		2	C1orf65	1	223568587	Silent	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	766246	223568587	25682034	12	20300											
ZNF678	339500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227843314	227843314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF678	NM_178549	exon4	c.C1528A	p.H510N	AGAATTCATACTG	.	79	16	66	0	.	91	A	227843314	C	A	227843314	3	1	158	1	0	0	0	0	1	0	0	0	18082	826	29	3	1542	3	ZNF678	1	227843314	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	4274727	227843314	21407307	13	20301											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237875069	237875069	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	RYR2	NM_001035	exon71	c.T10255G	p.F3419V	CAGAACTTCGTTG	.	208	18	185	0	.	158	G	237875069	T	G	237875069	3	3	158	1	0	0	0	0	1	0	0	0	13769	1609	56	5	10537	5	RYR2	1	237875069	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	10031755	237875069	11375552	14	20302											
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248487416	248487416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR2M7	NM_001004691	exon1	c.G455C	p.G152A	GTAGAGCCCAGGA	.	136	19	117	1	.	70	G	248487416	C	G	248487416	3	3	158	1	0	0	0	0	1	0	0	0	11014	739	26	4	486	4	OR2M7	1	248487416	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	10612347	248487416	763205	15	20303											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	21252519	21252519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	APOB	NM_000384	exon12	c.A1609G	p.K537E	TGTCTTTAGGCTC	.	36	13	50	0	.	175	C	21252519	T	C	21252519	3	2	158	1	0	0	0	0	1	0	0	0	785	1763	61	2	12154	2	APOB	2	21252519	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10		21252519	221946854	16	20304											
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32396397	32396397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC30A6	NM_001193513	exon2	c.T45A	p.F15L	CTTTTTTGGCAAG	.	89	33	100	0	.	90	A	32396397	T	A	32396397	3	1	158	1	0	0	0	0	1	0	0	0	14559	1809	63	4	51	4	SLC30A6	2	32396397	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	11143878	32396397	210802976	17	20305											
ANKRD36B	57730	bcgsc.ca;mdanderson.org	37	2	98154646	98154646	+	Missense_Mutation	SNP	C	C	G	rs2258816	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_025190	exon32	c.G2074C	p.G692R	ATTTCCCACCGCC	.	196	41	244	1	.	.	G	98154646	C	G	98154646	3	3	158	1	0	0	0	0	1	0	0	0	666	594	21	4	2035	4	ANKRD36B	2	98154646	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	65758249	98154646	145044727	18	20306											
ANAPC1	64682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	112550033	112550033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ANAPC1	NM_022662	exon38	c.C4618T	p.R1540C	AGAAGCGACAAAG	.	389	125	521	1	.	228	A	112550033	G	A	112550033	3	1	158	1	0	0	0	0	1	0	0	0	598	1058	37	1	1260	1	ANAPC1	2	112550033	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	14395387	112550033	130649340	19	20307											
PSD4	23550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113949983	113949983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PSD4	NM_012455	exon6	c.C1655T	p.S552F	TGAACTCTTCTTG	.	45	11	62	0	.	229	T	113949983	C	T	113949983	3	4	158	1	0	0	0	0	1	0	0	0	12649	913	32	3	1673	3	PSD4	2	113949983	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	1399950	113949983	129249390	20	20308											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179615005	179615005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TTN	NM_133379	exon46	c.T12122A	p.V4041D	GCTTTGACATCAT	.	84	31	110	0	.	636	T	179615005	A	T	179615005	3	4	158	1	0	0	0	0	1	0	0	0	16732	275	10	4	98175	4	TTN	2	179615005	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	65665022	179615005	63584368	21	20309											
CASP10	843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202082364	202082364	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CASP10	NM_032977	exon10	c.G1469C	p.R490T	GTCGAAGAGTGGA	.	162	53	197	0	.	1086	C	202082364	G	C	202082364	3	2	158	1	0	0	0	0	1	0	0	0	2669	942	33	4	1503	4	CASP10	2	202082364	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	22467359	202082364	41117009	22	20310											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10401666	10401666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ATP2B2	NM_001001331	exon13	c.A1801T	p.T601S	TGAAGGTGTACAC	.	30	11	33	0	.	95	A	10401666	T	A	10401666	3	1	158	1	0	0	0	0	1	0	0	0	1140	1696	59	4	1974	4	ATP2B2	3	10401666	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10		10401666	187620764	23	20311											
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49933287	49933287	+	Silent	SNP	G	G	A	rs201143544		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MST1R	NM_002447	exon12	c.C2823T	p.I941I	ACCCAGGATATGA	.	44	12	39	0	G|0.999;A|0.001	1406	A	49933287	G	A	49933287	2	1	158	1	0	0	0	0	0	0	0	1	9891	1164	41	3		3	MST1R	3	49933287	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	39531621	49933287	148089143	24	20312											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57356458	57356458	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DNAH12	NM_178504	exon50	c.G7833A	p.T2611T	AAGACCCGTGGGA	.	67	23	74	0	.	47	T	57356458	C	T	57356458	2	4	158	1	0	0	0	0	0	0	0	1	4600	639	23	1		1	DNAH12	3	57356458	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	7423171	57356458	140665972	25	20313											
CD80	941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119263583	119263583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CD80	NM_005191	exon3	c.T232A	p.S78T	CCCCAGACATCAT	.	93	34	132	0	.	92	T	119263583	A	T	119263583	3	4	158	1	0	0	0	0	1	0	0	0	3038	275	10	4	650	4	CD80	3	119263583	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	61907125	119263583	78758847	26	20314											
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168833394	168833394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MECOM	NM_004991	exon8	c.C2266G	p.P756A	GGACTGGAGTCAA	.	68	26	77	0	.	853	C	168833394	G	C	168833394	3	2	158	1	0	0	0	0	1	0	0	0	9422	1174	41	4	1493	4	MECOM	3	168833394	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	49569811	168833394	29189036	27	20315											
CWH43	80157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	49005828	49005828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CWH43	NM_025087	exon7	c.T879A	p.F293L	CATCTTTACTGCA	.	69	9	103	0	.	93	A	49005828	T	A	49005828	3	1	158	1	0	0	0	0	1	0	0	0	4073	1751	61	4	905	4	CWH43	4	49005828	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10		49005828	142148448	28	20316											
UBA6	55236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68543400	68543400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBA6	NM_018227	exon6	c.T394C	p.Y132H	GAACGTATGGATT	.	55	6	82	0	.	90	G	68543400	A	G	68543400	3	3	158	1	0	0	0	0	1	0	0	0	16829	449	16	2	2876	2	UBA6	4	68543400	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	19537572	68543400	122610876	29	20317											
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90035650	90035650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TIGD2	NM_145715	exon1	c.C1525T	p.L509F	AGGAGGCTTCGGA	.	80	34	110	0	.	90	T	90035650	C	T	90035650	3	4	158	1	0	0	0	0	1	0	0	0	15893	797	28	3	1527	3	TIGD2	4	90035650	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	21492250	90035650	101118626	30	20318											
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	162431553	162431553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FSTL5	NM_020116	exon11	c.G1336T	p.E446X	TACCTTCTTCTCT	.	308	103	346	0	.	158	A	162431553	C	A	162431553	4	1	158	1	0	0	0	0	0	1	0	0	6080	922	32	3	1231	3	FSTL5	4	162431553	Nonsense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	72395903	162431553	28722723	31	20319											
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	427999	427999	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AHRR	NM_020731	exon9	c.G852A	p.P284P	CCCGCCGCGGCTG	.	130	20	93	0	.	225	A	427999	G	A	427999	2	1	158	1	0	0	0	0	0	0	0	1	417	1074	38	1		1	AHRR	5	427999	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		427999	180487261	32	20320											
AMACR	23600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34005903	34005903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AMACR	NM_014324	exon2	c.T349G	p.C117G	ACCGGCAGAAGCT	.	32	5	37	0	.	90	C	34005903	A	C	34005903	3	2	158	1	0	0	0	0	1	0	0	0	562	188	7	5	1145	5	AMACR	5	34005903	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	33577904	34005903	146909357	33	20321											
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	77298849	77298849	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AP3B1	NM_003664	exon27	c.A3162G	p.S1054S	CATCAATGACCCA	.	42	17	39	0	.	90	C	77298849	T	C	77298849	2	2	158	1	0	0	0	0	0	0	0	1	744	1451	51	2		2	AP3B1	5	77298849	Silent	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	43292946	77298849	103616411	34	20322											
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140530762	140530762	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PCDHB6	NM_018939	exon1	c.G924A	p.E308E	TTTTGAGGAAATT	.	46	7	91	0	.	91	A	140530762	G	A	140530762	2	1	158	1	0	0	0	0	0	0	0	1	11546	991	35	3		3	PCDHB6	5	140530762	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	63231913	140530762	40384498	35	20323											
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	158135124	158135124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EBF1	NM_024007	exon15	c.G1607A	p.S536N	GAGGAGCTGCTGC	.	25	12	72	0	.	92	T	158135124	C	T	158135124	3	4	158	1	0	0	0	0	1	0	0	0	4880	797	28	3	176	3	EBF1	5	158135124	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	17604362	158135124	22780136	36	20324											
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	2954826	2954826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SERPINB6	NM_001271823	exon4	c.G487A	p.G163S	TTTCACCTTCTGT	.	43	12	45	0	.	226	T	2954826	C	T	2954826	3	4	158	1	0	0	0	0	1	0	0	0	14105	695	24	3	716	3	SERPINB6	6	2954826	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10		2954826	168160241	37	20325											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7576541	7576541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DSP	NM_004415	exon19	c.A2645G	p.E882G	ACCTGGAGAAACA	.	85	30	103	0	.	518	G	7576541	A	G	7576541	3	3	158	1	0	0	0	0	1	0	0	0	4781	304	11	2	2719	2	DSP	6	7576541	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	4621715	7576541	163538526	38	20326											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15468865	15468865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	JARID2	NM_004973	exon5	c.A586C	p.K196Q	GACGTCAAAACAG	.	82	29	102	0	.	228	C	15468865	A	C	15468865	3	2	158	1	0	0	0	0	1	0	0	0	7945	131	5	5	604	5	JARID2	6	15468865	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	7892324	15468865	155646202	39	20327											
DDR1	780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30861167	30861167	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DDR1	NM_001202523	exon10	c.C1368A	p.L456L	CATGCTCTGGCGG	.	23	6	21	0	.	1403	A	30861167	C	A	30861167	2	1	158	1	0	0	0	0	0	0	0	1	4336	900	32	3		3	DDR1	6	30861167	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	15392302	30861167	140253900	40	20328											
CFB	629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31915210	31915210	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CFB	NM_001710	exon4	c.C570T	p.H190H	CTACCACTGCAGC	.	35	15	50	0	.	91	T	31915210	C	T	31915210	2	4	158	1	0	0	0	0	0	0	0	1	3278	564	20	3		3	CFB	6	31915210	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	1054043	31915210	139199857	41	20329											
AGPAT1	10554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32138234	32138234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AGPAT1	NM_006411	exon4	c.T478C	p.S160P	CCTCAGACATGAC	.	37	15	39	0	.	90	G	32138234	A	G	32138234	3	3	158	1	0	0	0	0	1	0	0	0	386	275	10	2	389	2	AGPAT1	6	32138234	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	223024	32138234	138976833	42	20330											
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44137245	44137245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CAPN11	NM_007058	exon3	c.A316G	p.N106D	GTGCAGAACATCT	.	118	39	151	0	.	136	G	44137245	A	G	44137245	3	3	158	1	0	0	0	0	1	0	0	0	2624	246	9	2	326	2	CAPN11	6	44137245	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	11999011	44137245	126977822	43	20331											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106967133	106967133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AIM1	NM_001624	exon2	c.T826C	p.F276L	TCCTTATTTGAAA	.	100	35	138	0	.	139	C	106967133	T	C	106967133	3	2	158	1	0	0	0	0	1	0	0	0	430	1493	52	2	832	2	AIM1	6	106967133	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	62829888	106967133	64147934	44	20332											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138655844	138655844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KIAA1244	NM_020340	exon33	c.G5861C	p.G1954A	CCGGGGGCTTCTC	.	46	12	50	0	.	228	C	138655844	G	C	138655844	3	2	158	1	0	0	0	0	1	0	0	0	8217	1203	42	4	5991	4	KIAA1244	6	138655844	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	31688711	138655844	32459223	45	20333											
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160197285	160197285	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ACAT2	NM_005891	exon6	c.C738T	p.V246V	AACAGTCACCCCA	.	62	15	90	0	.	91	T	160197285	C	T	160197285	2	4	158	1	0	0	0	0	0	0	0	1	122	813	29	3		3	ACAT2	6	160197285	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	21541441	160197285	10917782	46	20334											
SLC29A4	222962	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5331370	5331370	+	Missense_Mutation	SNP	C	C	A	rs140428222	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC29A4	NM_153247	exon5	c.C462A	p.D154E	CTGCGACGTGTGG	.	58	25	68	1	C|1.000;T|0.000	515	A	5331370	C	A	5331370	3	1	158	1	0	0	0	0	1	0	0	0	14537	535	19	1	476	1	SLC29A4	7	5331370	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10		5331370	153807293	47	20335											
HOXA5	3202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27183054	27183054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HOXA5	NM_019102	exon1	c.G173A	p.R58H	CCCGAGCGGCCGA	.	33	7	38	1	.	514	T	27183054	C	T	27183054	3	4	158	1	0	0	0	0	1	0	0	0	7295	768	27	1	647	1	HOXA5	7	27183054	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	21851684	27183054	131955609	48	20336											
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64167242	64167242	+	Missense_Mutation	SNP	C	C	A	rs199803183	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF107	NM_016220	exon7	c.C560A	p.P187H	AGAAACCCAACAA	.	73	27	63	0	C|0.999;T|0.001	69	A	64167242	C	A	64167242	3	1	158	1	0	0	0	0	1	0	0	0	17712	623	22	3	566	3	ZNF107	7	64167242	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	36984188	64167242	94971421	49	20337											
DLC1	10395	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	12957573	12957573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DLC1	NM_182643	exon9	c.C2273T	p.P758L	GTAACAGGGCTGG	.	10	5	27	0	.	657	A	12957573	G	A	12957573	3	1	158	1	0	0	0	0	1	0	0	0	4550	1000	35	3	2353	3	DLC1	8	12957573	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		12957573	133406449	50	20338											
WRN	7486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	31030549	31030549	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	WRN	NM_000553	exon35	c.G4230A	p.W1410X	TGTGTGGTTTGCC	.	35	16	80	0	.	1036	A	31030549	G	A	31030549	4	1	158	1	0	0	0	0	0	1	0	0	17399	1270	44	3	4364	3	WRN	8	31030549	Nonsense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	18072976	31030549	115333473	51	20339											
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39506032	39506032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ADAM18	NM_014237	exon12	c.T1216A	p.C406S	TGTGACTGTGGTA	.	65	34	134	1	.	228	A	39506032	T	A	39506032	3	1	158	1	0	0	0	0	1	0	0	0	239	1580	55	4	1262	4	ADAM18	8	39506032	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	8475483	39506032	106857990	52	20340											
DNAJC5B	85479	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	66992665	66992665	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DNAJC5B	NM_033105	exon5	c.G387T	p.L129L	CTGCCTGTGCTGC	.	113	26	84	1	.	226	T	66992665	G	T	66992665	2	4	158	1	0	0	0	0	0	0	0	1	4651	1364	48	3		3	DNAJC5B	8	66992665	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	27486633	66992665	79371357	53	20341											
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75227318	75227318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	JPH1	NM_020647	exon2	c.G917C	p.G306A	CACTCCCCTTCAT	.	176	34	133	0	.	91	G	75227318	C	G	75227318	3	3	158	1	0	0	0	0	1	0	0	0	7960	623	22	4	1084	4	JPH1	8	75227318	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	8234653	75227318	71136704	54	20342											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17342344	17342344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CNTLN	NM_017738	exon12	c.G1788T	p.K596N	AATAAAGAGAGCA	.	140	45	193	0	.	91	T	17342344	G	T	17342344	3	4	158	1	0	0	0	0	1	0	0	0	3639	933	33	3	1864	3	CNTLN	9	17342344	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		17342344	123871087	55	20343											
TLN1	7094	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35703574	35703574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TLN1	NM_006289	exon48	c.A6457T	p.I2153L	GCCGTATGTGTTC	.	35	5	67	0	.	609	A	35703574	T	A	35703574	3	1	158	1	0	0	0	0	1	0	0	0	15944	1464	51	4	1208	4	TLN1	9	35703574	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	18361230	35703574	105509857	56	20344											
FAM22G	441457	bcgsc.ca;mdanderson.org	37	9	99701238	99701238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FAM22G	NM_001170741	exon7	c.C2033A	p.A678D	CTCCTGCCAGCAA	.	151	37	203	0	.	69	A	99701238	C	A	99701238	3	1	158	1	0	0	0	0	1	0	0	0	5546	739	26	3	2059	3	FAM22G	9	99701238	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	63997664	99701238	41512193	57	20345											
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71025434	71025434	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HKDC1	NM_025130	exon17	c.C2466T	p.C822C	GGTGTGCGGAGCC	.	80	38	87	0	.	95	T	71025434	C	T	71025434	2	4	158	1	0	0	0	0	0	0	0	1	7193	776	27	1		1	HKDC1	10	71025434	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10		71025434	64509313	58	20346											
GRID1	2894	broad.mit.edu;mdanderson.org	37	10	87362151	87362151	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GRID1	NM_017551	exon16	c.C2909A	p.S970X	TTGGGTGACCTGT	.	83	17	147	1	.	142	T	87362151	G	T	87362151	4	4	158	1	0	0	0	0	0	1	0	0	6771	1294	45	3	124	3	GRID1	10	87362151	Nonsense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	16336717	87362151	48172596	59	20347											
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	428795	428795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ANO9	NM_001012302	exon12	c.C947T	p.P316L	TAGTCGGGGCAGT	.	42	12	60	0	.	227	A	428795	G	A	428795	3	1	158	1	0	0	0	0	1	0	0	0	704	1232	43	3	1449	3	ANO9	11	428795	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		428795	134577721	60	20348											
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	7273526	7273526	+	Silent	SNP	C	C	T	rs146068689	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SYT9	NM_175733	exon1	c.C109T	p.L37L	TACCACCTGCGGG	.	57	23	52	0	C|1.000;G|0.000	155	T	7273526	C	T	7273526	2	4	158	1	0	0	0	0	0	0	0	1	15478	680	24	3		3	SYT9	11	7273526	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	6844731	7273526	127732990	61	20349											
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587833	55587833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR5D18	NM_001001952	exon1	c.C728T	p.A243V	CCTGTGCCTCCCA	.	70	20	87	0	.	71	T	55587833	C	T	55587833	3	4	158	1	0	0	0	0	1	0	0	0	11157	739	26	3	730	3	OR5D18	11	55587833	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	48314307	55587833	79418683	62	20350											
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58207024	58207025	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	p.V201L	ATCCCACCACAAA	.	94	44	106	0	.	.	AA	58207025	CC	AA	58207024	3	1	158	1	0	0	0	0	1	0	0	0	11148	507	18	3	347	3	OR5B12	11	58207024	Missense_Mutation	DNP	CC	TCGA-G3-A7M6-01A-11D-A33Q-10	2619191	58207024	76799492	63	20351											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6125791	6125791	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	VWF	NM_000552	exon30	c.G5202A	p.Q1734Q	TCCATACTGCAGC	.	111	28	102	0	.	163	T	6125791	C	T	6125791	2	4	158	1	0	0	0	0	0	0	0	1	17243	564	20	3		3	VWF	12	6125791	Silent	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10		6125791	127726104	64	20352											
FZD10	11211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130648395	130648395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FZD10	NM_007197	exon1	c.G908A	p.G303E	AGGAGGGACTGGA	.	18	6	26	0	.	658	A	130648395	G	A	130648395	3	1	158	1	0	0	0	0	1	0	0	0	6129	1174	41	3	910	3	FZD10	12	130648395	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	124522604	130648395	3203500	65	20353											
HNRNPC	3183	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21681136	21681136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HNRNPC	NM_031314	exon6	c.C545T	p.S182F	TTGGAAGATCCCC	.	64	26	110	1	.	90	A	21681136	G	A	21681136	3	1	158	1	0	0	0	0	1	0	0	0	7262	942	33	3	391	3	HNRNPC	14	21681136	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		21681136	85668404	66	20354											
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33684417	33684417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	NPAS3	NM_001164749	exon3	c.G170T	p.R57L	AATCCCGAGATGC	.	95	26	93	0	.	93	T	33684417	G	T	33684417	3	4	158	1	0	0	0	0	1	0	0	0	10564	1058	37	1	180	1	NPAS3	14	33684417	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	12003281	33684417	73665123	67	20355											
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57268479	57268479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OTX2	NM_001270525	exon3	c.T868A	p.S290T	ACGAGGATGTCTG	.	72	33	101	0	.	205	T	57268479	A	T	57268479	3	4	158	1	0	0	0	0	1	0	0	0	11321	333	12	4	29	4	OTX2	14	57268479	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	23584062	57268479	50081061	68	20356											
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25616615	25616615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBE3A	NM_000462	exon7	c.A715G	p.I239V	TTCTAATGGCATC	.	69	29	59	0	.	660	C	25616615	T	C	25616615	3	2	158	1	0	0	0	0	1	0	0	0	16876	1464	51	2	1944	2	UBE3A	15	25616615	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10		25616615	76914777	69	20357											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41961695	41961695	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MGA	NM_001080541	exon2	c.G603A	p.L201L	TTACCTGCCGAGG	.	90	23	92	0	.	522	A	41961695	G	A	41961695	2	1	158	1	0	0	0	0	0	0	0	1	9540	1306	46	3		3	MGA	15	41961695	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	16345080	41961695	60569697	70	20358											
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52521421	52521421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MYO5C	NM_018728	exon25	c.A3116G	p.E1039G	ATCTTCTCATCCT	.	37	14	62	0	.	145	C	52521421	T	C	52521421	3	2	158	1	0	0	0	0	1	0	0	0	10080	1551	54	2	2180	2	MYO5C	15	52521421	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	10559726	52521421	50009971	71	20359											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77057677	77057677	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SCAPER	NM_020843	exon13	c.1613+1G>T	.	GCCAGACCTTTTA	.	95	26	125	0	.	137	A	77057677	C	A	77057677	5	1	158	1	0	0	0	0	0	0	1	0	13878	521	18	3	2668	3	SCAPER	15	77057677	Splice_Site	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	24536256	77057677	25473715	72	20360											
SYNM	23336	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	99669633	99669633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SYNM	.	.	.	.	AAGGAATCTATTT	.	48	16	57	0	.	26	G	99669633	T	G	99669633	3	3	158	1	0	0	0	0	1	0	0	0	15452	1432	50	5	1081	5	SYNM	15	99669633	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	22611956	99669633	2861759	73	20361											
VASN	114990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4431099	4431099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	VASN	NM_138440	exon2	c.G221T	p.G74V	TTGCCGGCCTGCC	.	49	12	73	1	.	68	T	4431099	G	T	4431099	3	4	158	1	0	0	0	0	1	0	0	0	17124	1203	42	3	223	3	VASN	16	4431099	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		4431099	85923654	74	20362											
ERI2	112479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20802201	20802219	+	Frame_Shift_Del	DEL	GTCCCCTGAGGCCAGATCA	GTCCCCTGAGGCCAGATCA	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	GTCCCCTGAGGCCAGATCA	GTCCCCTGAGGCCAGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ERI2	NM_080663	exon9	c.768_786del	p.256_262del	ATGCTGGTCCCCT	.	277	48	379	0	.	153	-	20802219	GTCCCCTGAGGCCAGATCA	-	20802201	7	5	158	1	0	1	0	1	0	0	0	0	5228	1252	44	0	212	0	ERI2	16	20802201	Frame_Shift_Del	DEL	GTCCCCTGAGGCCAGATCA	TCGA-G3-A7M6-01A-11D-A33Q-10	16371102	20802201	69552552	75	20363											
DOK4	55715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57509446	57509446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DOK4	NM_018110	exon4	c.C261G	p.D87E	TGCCGAGTCATCA	.	18	5	19	0	.	227	C	57509446	G	C	57509446	3	2	158	1	0	0	0	0	1	0	0	0	4699	1020	36	4	743	4	DOK4	16	57509446	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	36707245	57509446	32845307	76	20364											
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3446875	3446875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TRPV3	NM_001258205	exon5	c.A359C	p.K120T	CGCTTCTTCAGCC	.	26	20	60	0	.	94	G	3446875	T	G	3446875	3	3	158	1	0	0	0	0	1	0	0	0	16594	1609	56	5	2069	5	TRPV3	17	3446875	Missense_Mutation	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10		3446875	77748335	77	20365											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	TP53,NS,carcinoma,+1	TP53	NM_000546	exon6	c.G644A	p.S215N	ACCACACTATGTC	.	51	29	108	1	.	70225	T	7578205	C	T	7578205	3	4	158	1	0	0	0	0	1	0	0	0	16378	565	20	3	650	3	TP53	17	7578205	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	4131330	7578205	73617005	78	20366											
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77808750	77808751	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CBX4	NM_003655	exon5	c.691_692insC	p.N231fs	TTCCGTTGGGGGG	.	123	14	120	0	.	228	G	77808751	-	G	77808750	7	5	158	1	0	1	1	0	0	0	0	0	2720	1812	63	0	995	0	CBX4	17	77808750	Frame_Shift_Ins	INS	-	TCGA-G3-A7M6-01A-11D-A33Q-10	70230545	77808750	3386460	79	20367											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79094718	79094718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AATK	NM_001080395	exon11	c.G3018C	p.E1006D	GGTGGCCTCGGCC	.	71	21	64	0	.	933	G	79094718	C	G	79094718	3	3	158	1	0	0	0	0	1	0	0	0	26	680	24	4	1122	4	AATK	17	79094718	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	1285968	79094718	2100492	80	20368											
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2885054	2885054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EMILIN2	NM_032048	exon3	c.A350G	p.D117G	GGGGAGATTGCCA	.	59	22	76	0	.	93	G	2885054	A	G	2885054	3	3	158	1	0	0	0	0	1	0	0	0	5094	333	12	2	360	2	EMILIN2	18	2885054	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10		2885054	75192194	81	20369											
C18orf8	29919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21110006	21110006	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C18orf8	NM_013326	exon17	c.A1509G	p.E503E	ACATGAACTTGTT	.	90	35	112	1	.	91	G	21110006	A	G	21110006	2	3	158	1	0	0	0	0	0	0	0	1	1907	40	2	2		2	C18orf8	18	21110006	Silent	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10	18224952	21110006	56967242	82	20370											
OR7G1	125962	broad.mit.edu;bcgsc.ca	37	19	9225688	9225688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR7G1	NM_001005192	exon1	c.T752C	p.F251S	CCATAGAACAAGG	.	67	5	69	0	.	70	G	9225688	A	G	9225688	3	3	158	1	0	0	0	0	1	0	0	0	11222	246	9	2	257	2	OR7G1	19	9225688	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10		9225688	49903295	83	20371											
ZNF43	7594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22000753	22000753	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF43	NM_001256653	exon3	c.C193T	p.L65L	GCTCCAGACAGGT	.	52	34	61	0	.	154	A	22000753	G	A	22000753	2	1	158	1	0	0	0	0	0	0	0	1	17900	933	33	3		3	ZNF43	19	22000753	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	12775065	22000753	37128230	84	20372											
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48965315	48965315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KCNJ14	NM_013348	exon2	c.G334A	p.G112S	CTCATTGCCTCGC	.	43	26	22	0	.	91	A	48965315	G	A	48965315	3	1	158	1	0	0	0	0	1	0	0	0	8048	1319	46	3	336	3	KCNJ14	19	48965315	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	26964562	48965315	10163668	85	20373											
ZNF615	284370	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52506956	52506956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF615	NM_001199324	exon3	c.G9C	p.Q3H	CTGGGCCTGCATC	.	66	10	62	0	.	95	G	52506956	C	G	52506956	3	3	158	1	0	0	0	0	1	0	0	0	18037	680	24	4	2202	4	ZNF615	19	52506956	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	3541641	52506956	6622027	86	20374											
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19560719	19560719	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC24A3	NM_020689	exon4	c.423+1G>C	.	TGTGAGGTACGTG	.	105	58	101	0	.	91	C	19560719	G	C	19560719	5	2	158	1	0	0	0	0	0	0	1	0	14467	1275	44	4	438	4	SLC24A3	20	19560719	Splice_Site	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10		19560719	43464801	87	20375											
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44512235	44512235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZSWIM1	NM_080603	exon2	c.C1004T	p.T335I	TCTGCACAGGGCC	.	96	51	77	0	.	91	T	44512235	C	T	44512235	3	4	158	1	0	0	0	0	1	0	0	0	18237	478	17	3	1006	3	ZSWIM1	20	44512235	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	24951516	44512235	18513285	88	20376											
POTEH	23784	hgsc.bcm.edu;broad.mit.edu	37	22	16279260	16279260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	POTEH	NM_001136213	exon4	c.963delA	p.K321fs	TTGCTGTTTTTGC	.	389	41	387	0	.	1	-	16279260	T	-	16279260	7	5	158	1	0	1	0	1	0	0	0	0	12267	1722	60	0	702	0	POTEH	22	16279260	Frame_Shift_Del	DEL	T	TCGA-G3-A7M6-01A-11D-A33Q-10		16279260	35025306	89	20377											
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31669449	31669449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	LIMK2	NM_005569	exon14	c.G1570C	p.D524H	AGCTATGATGAGA	.	54	14	62	0	.	548	C	31669449	G	C	31669449	3	2	158	1	0	0	0	0	1	0	0	0	8802	1290	45	4	1681	4	LIMK2	22	31669449	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	15390189	31669449	19635117	90	20378											
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42273946	42273946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SREBF2	NM_004599	exon9	c.G1580T	p.G527V	TCTTAGGTTCTGG	.	34	14	45	0	.	154	T	42273946	G	T	42273946	3	4	158	1	0	0	0	0	1	0	0	0	15141	1275	44	3	1614	3	SREBF2	22	42273946	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	10604497	42273946	9030620	91	20379											
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937389	12937389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TLR8	NM_138636	exon2	c.A230G	p.H77R	TCACACACATAAC	.	306	99	394	0	.	629	G	12937389	A	G	12937389	3	3	158	1	0	0	0	0	1	0	0	0	15954	159	6	2	236	2	TLR8	23	12937389	Missense_Mutation	SNP	A	TCGA-G3-A7M6-01A-11D-A33Q-10		12937389	142333171	92	20380											
GEMIN8	54960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14027290	14027290	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GEMIN8	NM_001042480	exon5	c.473-2A>T	.	CCGCCCTGAGAAC	.	81	25	103	0	.	130	A	14027290	T	A	14027290	5	1	158	1	0	0	0	0	0	0	1	0	6334	1594	55	4	261	4	GEMIN8	23	14027290	Splice_Site	SNP	T	TCGA-G3-A7M6-01A-11D-A33Q-10	1089901	14027290	141243270	93	20381											
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24513001	24513001	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PDK3	NM_001142386	exon2	c.248+1G>C	.	GAGTTGGTAAGTA	.	76	24	110	0	.	377	C	24513001	G	C	24513001	5	2	158	1	0	0	0	0	0	0	1	0	11677	1275	44	4	255	4	PDK3	23	24513001	Splice_Site	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	10485711	24513001	130757559	94	20382											
TFE3	7030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48895554	48895554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TFE3	NM_006521	exon5	c.G866A	p.G289E	TGCAGTCCTGTGG	.	130	46	144	0	.	658	T	48895554	C	T	48895554	3	4	158	1	0	0	0	0	1	0	0	0	15797	855	30	3	885	3	TFE3	23	48895554	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	24382553	48895554	106375006	95	20383											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51639742	51639742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MAGED1	NM_001005333	exon5	c.G1159A	p.A387T	CCACCAGCCTGGC	.	113	48	158	0	.	133	A	51639742	G	A	51639742	3	1	158	1	0	0	0	0	1	0	0	0	9183	971	34	3	1173	3	MAGED1	23	51639742	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	2744188	51639742	103630818	96	20384											
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	88008954	88008954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CPXCR1	NM_001184771	exon3	c.G539A	p.C180Y	TAGCATGTCTTTA	.	142	54	183	0	.	133	A	88008954	G	A	88008954	3	1	158	1	0	0	0	0	1	0	0	0	3836	1377	48	3	541	3	CPXCR1	23	88008954	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	36369212	88008954	67261606	97	20385											
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100608970	100608970	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	BTK	NM_000061	exon17	c.C1638G	p.V546V	ATCCAGGACATAC	.	57	16	58	0	.	1395	C	100608970	G	C	100608970	2	2	158	1	0	0	0	0	0	0	0	1	1557	1161	41	4		4	BTK	23	100608970	Silent	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	12600016	100608970	54661590	98	20386											
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141284	114141284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HTR2C	NM_000868	exon6	c.C683G	p.T228R	CGCTGACGATTAT	.	113	42	164	0	.	133	G	114141284	C	G	114141284	3	3	158	1	0	0	0	0	1	0	0	0	7443	536	19	4	697	4	HTR2C	23	114141284	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	13532314	114141284	41129276	99	20387											
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118971720	118971720	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UPF3B	NM_080632	exon10	c.G1302C	p.K434N	CAGCACCTTGTTT	.	55	19	56	0	.	133	G	118971720	C	G	118971720	3	3	158	1	0	0	0	0	1	0	0	0	17003	695	24	4	157	4	UPF3B	23	118971720	Missense_Mutation	SNP	C	TCGA-G3-A7M6-01A-11D-A33Q-10	4830436	118971720	36298840	100	20388											
SLC10A3	8273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153715955	153715955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC10A3	NM_001142392	exon3	c.C1325A	p.A442D	TAGTCAGCTTGAA	.	124	37	130	0	.	132	T	153715955	G	T	153715955	3	4	158	1	0	0	0	0	1	0	0	0	14375	971	34	3	112	3	SLC10A3	23	153715955	Missense_Mutation	SNP	G	TCGA-G3-A7M6-01A-11D-A33Q-10	34744235	153715955	1554605	101	20389											
MAD2L2	10459	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11736162	11736162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MAD2L2	NM_006341	exon6	c.T368A	p.L123H	GCCCGGAGCAGCT	.	15	5	21	0	.	659	T	11736162	A	T	11736162	3	4	159	1	0	0	0	0	1	0	0	0	9150	304	11	4	283	4	MAD2L2	1	11736162	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10		11736162	237514459	1	20390											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	14105806	14105806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PRDM2	NM_015866	exon8	c.C1516T	p.H506Y	AGAGTTCACGAAC	.	39	13	82	0	.	116	T	14105806	C	T	14105806	3	4	159	1	0	0	0	0	1	0	0	0	12458	826	29	3	1542	3	PRDM2	1	14105806	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	2369644	14105806	235144815	2	20391											
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86554879	86554879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	COL24A1	NM_152890	exon7	c.C1685T	p.P562L	CCAGGGGGGCCCA	.	160	40	188	0	.	94	A	86554879	G	A	86554879	3	1	159	1	0	0	0	0	1	0	0	0	3683	1232	43	3	3675	3	COL24A1	1	86554879	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	72449073	86554879	162695742	3	20392											
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286392	152286392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FLG	NM_002016	exon3	c.T970C	p.S324P	ACGCAGATCCATG	.	90	27	128	1	.	106	G	152286392	A	G	152286392	3	3	159	1	0	0	0	0	1	0	0	0	5922	333	12	2	11219	2	FLG	1	152286392	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	65731513	152286392	96964229	4	20393											
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	249211312	249211312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PGBD2	NM_170725	exon3	c.C529T	p.Q177X	ACGGCTCAGGAAT	.	46	12	47	0	.	91	T	249211312	C	T	249211312	4	4	159	1	0	0	0	0	0	1	0	0	11781	827	29	3	535	3	PGBD2	1	249211312	Nonsense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	96924920	249211312	39309	5	20394											
TPO	7173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1481014	1481014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TPO	NM_175719	exon8	c.G976T	p.A326S	CTGGACGCGTCCA	.	38	10	62	0	.	332	T	1481014	G	T	1481014	3	4	159	1	0	0	0	0	1	0	0	0	16407	1087	38	1	1002	1	TPO	2	1481014	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		1481014	241718359	6	20395											
PXDN	7837	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1638057	1638057	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PXDN	NM_012293	exon23	c.T4359C	p.P1453P	GGTGGCAGGGGGG	.	27	7	40	0	.	166	G	1638057	A	G	1638057	2	3	159	1	0	0	0	0	0	0	0	1	12847	175	7	2		2	PXDN	2	1638057	Silent	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	157043	1638057	241561316	7	20396											
NCOA1	8648	broad.mit.edu;mdanderson.org	37	2	24962370	24962370	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NCOA1	NM_147223	exon16	c.A3271C	p.R1091R	AATATGAGATCAG	.	52	8	43	2	.	228	C	24962370	A	C	24962370	2	2	159	1	0	0	0	0	0	0	0	1	10228	296	11	5		5	NCOA1	2	24962370	Silent	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	23324313	24962370	218237003	8	20397											
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48950602	48950602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LHCGR	NM_000233	exon6	c.G529T	p.V177L	GTGTTACAGATTC	.	55	11	82	0	.	589	A	48950602	C	A	48950602	3	1	159	1	0	0	0	0	1	0	0	0	8762	478	17	3	1594	3	LHCGR	2	48950602	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	23988232	48950602	194248771	9	20398											
PSD4	23550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113955466	113955466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PSD4	NM_012455	exon14	c.G2600T	p.W867L	CTGACTGGCGCCT	.	26	7	35	0	.	229	T	113955466	G	T	113955466	3	4	159	1	0	0	0	0	1	0	0	0	12649	1357	47	3	2650	3	PSD4	2	113955466	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	65004864	113955466	129243907	10	20399											
ZSWIM2	151112	broad.mit.edu;bcgsc.ca	37	2	187713759	187713759	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZSWIM2	NM_182521	exon1	c.C99G	p.L33L	TCGTAGGAGGTAG	.	57	15	104	2	.	93	C	187713759	G	C	187713759	2	2	159	1	0	0	0	0	0	0	0	1	18238	1161	41	4		4	ZSWIM2	2	187713759	Silent	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	73758293	187713759	55485614	11	20400											
HECW2	57520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197183957	197183957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HECW2	NM_020760	exon9	c.G1657A	p.G553S	CTGGGCCGCCTTC	.	34	7	46	0	.	668	T	197183957	C	T	197183957	3	4	159	1	0	0	0	0	1	0	0	0	7043	652	23	1	3145	1	HECW2	2	197183957	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	9470198	197183957	46015416	12	20401											
CCDC150	284992	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197595663	197595663	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001080539	exon26	c.A3063C	p.S1021S	GGAATCAGAACAG	.	46	10	81	1	.	.	C	197595663	A	C	197595663	2	2	159	1	0	0	0	0	0	0	0	1	2785	175	7	5		5	CCDC150	2	197595663	Silent	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	411706	197595663	45603710	13	20402											
FARSB	10056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223494886	223494886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FARSB	NM_005687	exon9	c.T794C	p.I265T	AGAACTATTTTTG	.	111	36	143	0	.	91	G	223494886	A	G	223494886	3	3	159	1	0	0	0	0	1	0	0	0	5680	449	16	2	1011	2	FARSB	2	223494886	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	25899223	223494886	19704487	14	20403											
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234839334	234839334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	TRPM8,upper_arm,malignant_melanoma,-1	TRPM8	NM_024080	exon3	c.G139A	p.A47T	ATTCAAGCAAATT	.	57	13	92	0	.	94	A	234839334	G	A	234839334	3	1	159	1	0	0	0	0	1	0	0	0	16589	971	34	3	145	3	TRPM8	2	234839334	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	11344448	234839334	8360039	15	20404											
GPC1	2817	ucsc.edu;bcgsc.ca	37	2	241401973	241401973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	GPC1	NM_002081	exon3	c.A691T	p.S231C	GTGGCCAGCGACG	.	17	4	19	0	.	153	T	241401973	A	T	241401973	3	4	159	1	0	0	0	0	1	0	0	0	6597	188	7	4	701	4	GPC1	2	241401973	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	6562639	241401973	1797400	16	20405											
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113005642	113005642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	BOC	NM_033254	exon20	c.C3278A	p.P1093H	AGGAACCTGGAAT	.	33	12	60	0	.	157	A	113005642	C	A	113005642	3	1	159	1	0	0	0	0	1	0	0	0	1481	681	24	3	3348	3	BOC	3	113005642	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10		113005642	85016788	17	20406											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142275251	142275251	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ATR	NM_001184	exon9	c.T2052G	p.S684S	GTTACAAGAATTC	.	77	18	87	0	.	1139	C	142275251	A	C	142275251	2	2	159	1	0	0	0	0	0	0	0	1	1204	59	3	5		5	ATR	3	142275251	Silent	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	29269609	142275251	55747179	18	20407											
NMD3	51068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160960387	160960387	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NMD3	NM_015938	exon11	c.C963T	p.C321C	GGAATGCAGCATA	.	52	9	76	1	.	91	T	160960387	C	T	160960387	2	4	159	1	0	0	0	0	0	0	0	1	10488	718	25	3		3	NMD3	3	160960387	Silent	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	18685136	160960387	37062043	19	20408											
PIGZ	80235	bcgsc.ca;mdanderson.org	37	3	196674072	196674072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PIGZ	NM_025163	exon3	c.G1696T	p.D566Y	GGTGGTCCCTCCA	.	13	7	28	1	.	93	A	196674072	C	A	196674072	3	1	159	1	0	0	0	0	1	0	0	0	11905	855	30	3	47	3	PIGZ	3	196674072	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	35713685	196674072	1348358	20	20409											
JAKMIP1	152789	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6087184	6087184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	JAKMIP1	NM_001099433	exon4	c.C797G	p.P266R	ATCCCGGGCGGGA	.	16	5	32	0	.	292	C	6087184	G	C	6087184	3	2	159	1	0	0	0	0	1	0	0	0	7940	1232	43	4	1845	4	JAKMIP1	4	6087184	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		6087184	185067092	21	20410											
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177071281	177071281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	WDR17	NM_170710	exon16	c.A2207T	p.N736I	CTGCTAATTCTCA	.	73	20	82	1	.	95	T	177071281	A	T	177071281	3	4	159	1	0	0	0	0	1	0	0	0	17274	101	4	4	2265	4	WDR17	4	177071281	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	170984097	177071281	14082995	22	20411											
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140516880	140516880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PCDHB5	NM_015669	exon1	c.G1864C	p.E622Q	AATGGCGAGGTGC	.	11	4	9	0	.	95	C	140516880	G	C	140516880	3	2	159	1	0	0	0	0	1	0	0	0	11545	1059	37	4	1866	4	PCDHB5	5	140516880	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		140516880	40398380	23	20412											
MFAP3	4238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153429404	153429404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MFAP3	NM_005927	exon2	c.A122G	p.N41S	CTTACAATGCATC	.	84	21	120	0	.	90	G	153429404	A	G	153429404	3	3	159	1	0	0	0	0	1	0	0	0	9515	101	4	2	124	2	MFAP3	5	153429404	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	12912524	153429404	27485856	24	20413											
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152415519	152415519	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ESR1	NM_001122742	exon9	c.1370-1G>A	.	CATTCAGGAGTGT	.	38	10	49	0	.	1042	A	152415519	G	A	152415519	5	1	159	1	0	0	0	0	0	0	1	0	5256	1014	35	3	1395	3	ESR1	6	152415519	Splice_Site	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		152415519	18699548	25	20414											
CCR6	1235	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	167550438	167550438	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CCR6	NM_004367	exon3	c.C720T	p.T240T	CAAAACCTTGGTG	.	52	9	58	1	.	227	T	167550438	C	T	167550438	2	4	159	1	0	0	0	0	0	0	0	1	2945	668	24	3		3	CCR6	6	167550438	Silent	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	15134919	167550438	3564629	26	20415											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92733863	92733863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SAMD9	NM_001193307	exon2	c.A1548T	p.E516D	AGCTCTTTCTCTT	.	51	18	71	0	.	140	A	92733863	T	A	92733863	3	1	159	1	0	0	0	0	1	0	0	0	13826	1838	64	4	3225	4	SAMD9	7	92733863	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10		92733863	66404800	27	20416											
ASB4	51666	ucsc.edu;bcgsc.ca	37	7	95157219	95157219	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASB4	NM_016116	exon3	c.C582T	p.Y194Y	CTTCTACGTGGAA	.	20	4	25	0	.	226	T	95157219	C	T	95157219	2	4	159	1	0	0	0	0	0	0	0	1	1025	547	19	1		1	ASB4	7	95157219	Silent	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	2423356	95157219	63981444	28	20417											
LMOD2	442721	broad.mit.edu;bcgsc.ca	37	7	123303229	123303229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LMOD2	NM_207163	exon2	c.G1589A	p.R530Q	CAATTCGGGGAAG	.	84	7	100	0	.	68	A	123303229	G	A	123303229	3	1	159	1	0	0	0	0	1	0	0	0	8857	1116	39	1	1595	1	LMOD2	7	123303229	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	28146010	123303229	35835434	29	20418											
HIPK2	28996	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139258131	139258131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HIPK2	NM_022740	exon15	c.A3139G	p.I1047V	TGGTGATGTGCTG	.	14	5	27	0	.	785	C	139258131	T	C	139258131	3	2	159	1	0	0	0	0	1	0	0	0	7117	1464	51	2	461	2	HIPK2	7	139258131	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10	15954902	139258131	19880532	30	20419											
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143657370	143657370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	OR2F1	NM_012369	exon1	c.T307C	p.F103L	TTATTTTTCTCCC	.	62	17	95	0	.	71	C	143657370	T	C	143657370	3	2	159	1	0	0	0	0	1	0	0	0	10996	1841	64	2	309	2	OR2F1	7	143657370	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10	4399239	143657370	15481293	31	20420											
SGK196	0	bcgsc.ca;mdanderson.org	37	8	42977499	42977499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_032237	exon5	c.A532G	p.R178G	CAGCACAGGCTGG	.	22	11	55	2	.	.	G	42977499	A	G	42977499	3	3	159	1	0	0	0	0	1	0	0	0	14208	179	7	2	538	2	SGK196	8	42977499	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10		42977499	103386523	32	20421											
ASPH	444	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	62475310	62475310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASPH	NM_004318	exon18	c.A1430T	p.Y477F	TCTTCATAAACTT	.	100	13	63	1	.	93	A	62475310	T	A	62475310	3	1	159	1	0	0	0	0	1	0	0	0	1053	1406	49	4	878	4	ASPH	8	62475310	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10	19497811	62475310	83888712	33	20422											
LRRC6	23639	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133584681	133584681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LRRC6	NM_012472	exon12	c.T1274C	p.F425S	TCAGGGAATGAGT	.	357	49	254	2	.	92	G	133584681	A	G	133584681	3	3	159	1	0	0	0	0	1	0	0	0	9016	246	9	2	130	2	LRRC6	8	133584681	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	71109371	133584681	12779341	34	20423											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18639393	18639393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ADAMTSL1	NM_052866	exon7	c.C818T	p.A273V	TCACAGCAGATTT	.	44	16	56	0	.	230	T	18639393	C	T	18639393	3	4	159	1	0	0	0	0	1	0	0	0	274	710	25	3	844	3	ADAMTSL1	9	18639393	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10		18639393	122574038	35	20424											
IFNA14	3448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21239523	21239523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	IFNA14	NM_002172	exon1	c.G412T	p.D138Y	TGGAGTCCTCATT	.	47	18	103	0	.	68	A	21239523	C	A	21239523	3	1	159	1	0	0	0	0	1	0	0	0	7534	855	30	3	161	3	IFNA14	9	21239523	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	2600130	21239523	119973908	36	20425											
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34310818	34310818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	KIF24	NM_194313	exon2	c.A527G	p.Y176C	GAAAGGTAATTTG	.	133	34	174	0	.	22	C	34310818	T	C	34310818	3	2	159	1	0	0	0	0	1	0	0	0	8292	1638	57	2	3627	2	KIF24	9	34310818	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10	13071295	34310818	106902613	37	20426											
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114348335	114348335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PTGR1	NM_001146108	exon5	c.C320T	p.T107I	CACTCTGTCAGCA	.	70	18	110	0	.	90	A	114348335	G	A	114348335	3	1	159	1	0	0	0	0	1	0	0	0	12753	1377	48	3	724	3	PTGR1	9	114348335	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	80037517	114348335	26865096	38	20427											
GLE1	2733	broad.mit.edu;mdanderson.org	37	9	131295815	131295815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	GLE1	NM_001499	exon10	c.G1336A	p.D446N	ATCTTTGACAAGA	.	53	11	53	2	.	22	A	131295815	G	A	131295815	3	1	159	1	0	0	0	0	1	0	0	0	6435	1290	45	3	1374	3	GLE1	9	131295815	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	16947480	131295815	9917616	39	20428											
ARHGAP12	94134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32150410	32150410	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ARHGAP12	NM_001270698	exon4	c.G861C	p.G287G	CTGTGTCCCTCTG	.	121	29	122	0	.	227	G	32150410	C	G	32150410	2	3	159	1	0	0	0	0	0	0	0	1	865	842	30	4		4	ARHGAP12	10	32150410	Silent	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10		32150410	103384337	40	20429											
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96796969	96796969	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CYP2C8	NM_000770	exon9	c.T1389C	p.D463D	CTTTAAATCATCA	.	64	16	92	0	.	90	G	96796969	A	G	96796969	2	3	159	1	0	0	0	0	0	0	0	1	4167	98	4	2		2	CYP2C8	10	96796969	Silent	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	64646559	96796969	38737778	41	20430											
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116417809	116417809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ABLIM1	NM_002313	exon1	c.G151T	p.A51S	TATGAGCGGTGAA	.	55	17	64	0	.	153	A	116417809	C	A	116417809	3	1	159	1	0	0	0	0	1	0	0	0	94	768	27	1	2361	1	ABLIM1	10	116417809	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	19620840	116417809	19116938	42	20431											
PCF11	51585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82879585	82879585	+	Silent	SNP	G	G	A	rs149809762		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PCF11	NM_015885	exon8	c.G2208A	p.L736L	CGGCCTGGATACA	.	59	13	91	1	G|0.998;A|0.002	23	A	82879585	G	A	82879585	2	1	159	1	0	0	0	0	0	0	0	1	11573	1335	47	3		3	PCF11	11	82879585	Silent	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		82879585	52126931	43	20432											
DBX2	440097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45429822	45429822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DBX2	NM_001004329	exon2	c.C479G	p.A160G	GAGGATGCAGGGC	.	33	5	50	0	.	90	C	45429822	G	C	45429822	3	2	159	1	0	0	0	0	1	0	0	0	4260	1319	46	4	552	4	DBX2	12	45429822	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		45429822	88422073	44	20433											
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53609161	53609161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RARG	NM_000966	exon5	c.A391G	p.N131D	TACAGTTTTTGTC	.	25	6	39	0	.	722	C	53609161	T	C	53609161	3	2	159	1	0	0	0	0	1	0	0	0	13054	1841	64	2	997	2	RARG	12	53609161	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10	8179339	53609161	80242734	45	20434											
TXNRD1	7296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104645406	104645406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TXNRD1	.	.	.	.	ATAGATGGTCACT	.	26	6	45	0	.	90	A	104645406	G	A	104645406	3	1	159	1	0	0	0	0	1	0	0	0	16804	1348	47	3	199	3	TXNRD1	12	104645406	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	51036245	104645406	29206489	46	20435											
ANKLE2	23141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133324833	133324833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ANKLE2	NM_015114	exon4	c.C932A	p.A311D	AGCTTGGCGGTGA	.	48	7	105	0	.	68	T	133324833	G	T	133324833	3	4	159	1	0	0	0	0	1	0	0	0	633	1203	42	3	1924	3	ANKLE2	12	133324833	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	28679427	133324833	527062	47	20436											
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	21486186	21486186	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NDRG2	NM_201537	exon15	c.G909A	p.L303L	CTCGGTCAGCTTG	.	27	15	29	0	.	154	T	21486186	C	T	21486186	2	4	159	1	0	0	0	0	0	0	0	1	10252	813	29	3		3	NDRG2	14	21486186	Silent	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10		21486186	85863354	48	20437											
DLST	1743	bcgsc.ca;mdanderson.org	37	14	75360077	75360077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DLST	NM_001933	exon9	c.C622A	p.P208T	GTTGCCCCACCAC	.	72	20	95	2	.	227	A	75360077	C	A	75360077	3	1	159	1	0	0	0	0	1	0	0	0	4569	623	22	3	656	3	DLST	14	75360077	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	53873891	75360077	31989463	49	20438											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89385015	89385015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ACAN	NM_001135	exon5	c.A674G	p.D225G	ACAAGGATGAGTT	.	34	17	44	0	.	25	G	89385015	A	G	89385015	3	3	159	1	0	0	0	0	1	0	0	0	117	333	12	2	688	2	ACAN	15	89385015	Missense_Mutation	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10		89385015	13146377	50	20439											
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93510735	93510735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CHD2	NM_001271	exon17	c.G2181C	p.Q727H	GAAACAGTATTAC	.	59	13	63	0	.	229	C	93510735	G	C	93510735	3	2	159	1	0	0	0	0	1	0	0	0	3325	1020	36	4	2247	4	CHD2	15	93510735	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	4125720	93510735	9020657	51	20440											
ZG16B	124220	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2880751	2880751	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZG16B	NM_145252	exon3	c.G217T	p.E73X	GACCATGAAATCA	.	35	10	56	0	.	91	T	2880751	G	T	2880751	4	4	159	1	0	0	0	0	0	1	0	0	17669	1291	45	3	227	3	ZG16B	16	2880751	Nonsense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		2880751	87474002	52	20441											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3830772	3830772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CREBBP	NM_004380	exon8	c.A1784G	p.H595R	GTGACATGTTCGT	.	43	10	73	0	.	1807	C	3830772	T	C	3830772	3	2	159	1	0	0	0	0	1	0	0	0	3861	1464	51	2	5640	2	CREBBP	16	3830772	Missense_Mutation	SNP	T	TCGA-G3-A7M7-01A-12D-A34Z-10	950021	3830772	86523981	53	20442											
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48595832	48595832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	N4BP1	NM_153029	exon2	c.G722T	p.G241V	GGAGTCCCAGCTT	.	81	24	129	0	.	22	A	48595832	C	A	48595832	3	1	159	1	0	0	0	0	1	0	0	0	10109	623	22	3	1992	3	N4BP1	16	48595832	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	44765060	48595832	41758921	54	20443											
NR1D1	9572	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38252734	38252734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NR1D1	NM_021724	exon4	c.G566A	p.R189H	TTGAAGCGACATT	.	45	12	61	1	.	226	T	38252734	C	T	38252734	3	4	159	1	0	0	0	0	1	0	0	0	10615	768	27	1	1298	1	NR1D1	17	38252734	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10		38252734	42942476	55	20444											
KRT14	3861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39740122	39740122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	KRT14	NM_000526	exon4	c.G817A	p.D273N	CAGCGTCCATCTC	.	43	11	53	1	.	91	T	39740122	C	T	39740122	3	4	159	1	0	0	0	0	1	0	0	0	8451	855	30	3	621	3	KRT14	17	39740122	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	1487388	39740122	41455088	56	20445											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41245778	41245778	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	BRCA1	NM_007300	exon10	c.T1770C	p.S590S	GCTTATACTGCTG	.	136	13	173	0	.	3415	G	41245778	A	G	41245778	2	3	159	1	0	0	0	0	0	0	0	1	1498	388	14	2		2	BRCA1	17	41245778	Silent	SNP	A	TCGA-G3-A7M7-01A-12D-A34Z-10	1505656	41245778	39949432	57	20446											
RNF43	54894	ucsc.edu;mdanderson.org	37	17	56437569	56437569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RNF43	NM_017763	exon8	c.G893A	p.C298Y	TCCACACAGTTAC	.	21	4	28	0	.	92	T	56437569	C	T	56437569	3	4	159	1	0	0	0	0	1	0	0	0	13495	478	17	3	1470	3	RNF43	17	56437569	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	15191791	56437569	24757641	58	20447											
GGA3	23163	ucsc.edu;mdanderson.org	37	17	73236489	73236489	+	Silent	SNP	G	G	C	rs149621783	byfrequency;alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	GGA3	NM_138619	exon12	c.C1197G	p.L399L	GTCGGCGAGGCCT	.	17	4	15	0	G|1.000;A|0.000	154	C	73236489	G	C	73236489	2	2	159	1	0	0	0	0	0	0	0	1	6354	1045	37	4		4	GGA3	17	73236489	Silent	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	16798920	73236489	7958721	59	20448											
ASNA1	439	broad.mit.edu;mdanderson.org	37	19	12856230	12856230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASNA1	NM_004317	exon3	c.G349T	p.E117X	CCTGACGAGTTCT	.	12	3	14	0	.	92	T	12856230	G	T	12856230	4	4	159	1	0	0	0	0	0	1	0	0	1047	1059	37	1	359	1	ASNA1	19	12856230	Nonsense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		12856230	46272753	60	20449											
ZNF675	171392	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	23844915	23844915	+	Splice_Site	SNP	C	C	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF675	NM_138330	exon4	c.226+1G>C	.	CACTTACCTGGGG	.	57	15	51	1	.	228	G	23844915	C	G	23844915	5	3	159	1	0	0	0	0	0	0	1	0	18079	521	18	4	1487	4	ZNF675	19	23844915	Splice_Site	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	10988685	23844915	35284068	61	20450											
FLT3LG	2323	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49979435	49979435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FLT3LG	NM_001204503	exon3	c.G178A	p.V60M	GTCACCGTGGCCT	.	29	6	52	0	.	115	A	49979435	G	A	49979435	3	1	159	1	0	0	0	0	1	0	0	0	5943	1145	40	1	188	1	FLT3LG	19	49979435	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	26134520	49979435	9149548	62	20451											
ZNF616	90317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52618825	52618825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF616	NM_178523	exon4	c.G1592T	p.S531I	CGGTCACTGAAGA	.	58	10	61	0	.	90	A	52618825	C	A	52618825	3	1	159	1	0	0	0	0	1	0	0	0	18038	565	20	3	757	3	ZNF616	19	52618825	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	2639390	52618825	6510158	63	20452											
CST5	1473	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	23856835	23856835	+	Missense_Mutation	SNP	C	C	A	rs146272783	byfrequency;alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CST5	NM_001900	exon3	c.G419T	p.R140L	ACTTTCCGGCACT	.	22	4	23	0	C|0.998;T|0.002	90	A	23856835	C	A	23856835	3	1	159	1	0	0	0	0	1	0	0	0	3975	652	23	1	13	1	CST5	20	23856835	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10		23856835	39168685	64	20453											
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	46	18	74	0	C|1.000	4767	T	57484420	C	T	57484420	3	4	159	1	0	0	0	0	1	0	0	0	6510	652	23	1	3448	1	GNAS	20	57484420	Missense_Mutation	SNP	C	TCGA-G3-A7M7-01A-12D-A34Z-10	33627585	57484420	5541100	65	20454											
DGCR6L	85359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20307214	20307214	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DGCR6L	NM_033257	exon2	c.C219T	p.L73L	TTCGGTGAGGTGC	.	54	9	73	0	.	90	A	20307214	G	A	20307214	2	1	159	1	0	0	0	0	0	0	0	1	4463	1277	45	3		3	DGCR6L	22	20307214	Silent	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		20307214	30997352	66	20455											
PPIL2	23759	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	22049306	22049306	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PPIL2	NM_014337	exon19	c.G1413A	p.Q471Q	GAGCCAGGGCCCC	.	10	6	16	0	.	92	A	22049306	G	A	22049306	2	1	159	1	0	0	0	0	0	0	0	1	12327	991	35	3		3	PPIL2	22	22049306	Silent	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10	1742092	22049306	29255260	67	20456											
TMEM187	8269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153247691	153247691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TMEM187	NM_003492	exon2	c.G178A	p.V60M	TCACTCGTGAACA	.	36	23	38	0	.	130	A	153247691	G	A	153247691	3	1	159	1	0	0	0	0	1	0	0	0	16106	1145	40	1	180	1	TMEM187	23	153247691	Missense_Mutation	SNP	G	TCGA-G3-A7M7-01A-12D-A34Z-10		153247691	2022869	68	20457											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176709306	176709306	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PAPPA2	NM_020318	exon14	c.C4125T	p.D1375D	AGAGGACGAGGGG	.	69	9	81	0	.	548	T	176709306	C	T	176709306	2	4	160	1	0	0	0	0	0	0	0	1	11433	535	19	1		1	PAPPA2	1	176709306	Silent	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10		176709306	72541315	1	20458											
HMCN1	83872	ucsc.edu;bcgsc.ca	37	1	186077704	186077704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HMCN1	NM_031935	exon71	c.G10964T	p.W3655L	TTACTTGGCTCAG	.	53	5	76	0	.	113	T	186077704	G	T	186077704	3	4	160	1	0	0	0	0	1	0	0	0	7220	1357	47	3	11246	3	HMCN1	1	186077704	Missense_Mutation	SNP	G	TCGA-G3-A7M8-01A-11D-A33Q-10	9368398	186077704	63172917	2	20459											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197071915	197071915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ASPM	NM_018136	exon18	c.G6466C	p.G2156R	TTTTACCTTGATA	.	51	18	57	0	.	615	G	197071915	C	G	197071915	3	3	160	1	0	0	0	0	1	0	0	0	1056	681	24	4	4011	4	ASPM	1	197071915	Missense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	10994211	197071915	52178706	3	20460											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	204214797	204214797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PLEKHA6	NM_014935	exon14	c.G1978T	p.E660X	GCCCCTCCATCAC	.	34	11	35	0	.	654	A	204214797	C	A	204214797	4	1	160	1	0	0	0	0	0	1	0	0	12060	864	30	3	1204	3	PLEKHA6	1	204214797	Nonsense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	7142882	204214797	45035824	4	20461											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21230621	21230625	+	Frame_Shift_Del	DEL	GAAAA	GAAAA	-	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	GAAAA	GAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOB	NM_000384	exon26	c.9115_9119del	p.3039_3040del	TGGGCTGAAAAGA	.	123	38	164	0	.	175	-	21230625	GAAAA	-	21230621	7	5	160	1	0	1	0	1	0	0	0	0	785	1294	45	0	4588	0	APOB	2	21230621	Frame_Shift_Del	DEL	GAAAA	TCGA-G3-A7M8-01A-11D-A33Q-10		21230621	221968752	5	20462											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44209519	44209519	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRPPRC	NM_133259	exon2	c.T204C	p.I68I	CTCTTGAATATCT	.	207	12	253	0	.	93	G	44209519	A	G	44209519	2	3	160	1	0	0	0	0	0	0	0	1	8965	242	9	2		2	LRPPRC	2	44209519	Silent	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10	22978898	44209519	198989854	6	20463											
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	60687855	60687855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	BCL11A	NM_018014	exon4	c.G2192A	p.G731D	GGCCTGCCCGGGC	.	47	12	54	0	.	1149	T	60687855	C	T	60687855	3	4	160	1	0	0	0	0	1	0	0	0	1363	739	26	3	425	3	BCL11A	2	60687855	Missense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	16478336	60687855	182511518	7	20464											
SNED1	25992	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241979571	241979571	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	TGTGTGCCAGGCC	.	51	6	59	0	.	72	T	241979571	C	T	241979571	2	4	160	1	0	0	0	0	0	0	0	1	14845	747	26	3		3	SNED1	2	241979571	Silent	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	181291716	241979571	1219802	8	20465											
RPL15	6138	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	23960001	23960001	+	Silent	SNP	C	C	T	rs35608037	byfrequency	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	RPL15	NM_001253383	exon3	c.C243T	p.Y81Y	AACTTACGGCAAG	.	33	11	35	0	C|0.992;T|0.008	91	T	23960001	C	T	23960001	2	4	160	1	0	0	0	0	0	0	0	1	13562	547	19	1		1	RPL15	3	23960001	Silent	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10		23960001	174062429	9	20466											
SPCS1	28972	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52741737	52741737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SPCS1	NM_014041	exon4	c.A419G	p.H140R	GCCGGCATCCTCT	.	383	28	428	2	.	90	G	52741737	A	G	52741737	3	3	160	1	0	0	0	0	1	0	0	0	15022	217	8	2	433	2	SPCS1	3	52741737	Missense_Mutation	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10	28781736	52741737	145280693	10	20467											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	77	22	93	0	.	27752	G	178952085	A	G	178952085	3	3	160	1	0	0	0	0	1	0	0	0	11913	217	8	2	3218	2	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10	126210348	178952085	19070345	11	20468											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158242731	158242731	+	Missense_Mutation	SNP	G	G	T	rs147349807		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	GRIA2	NM_000826	exon6	c.G862T	p.A288S	CCTGGAGCTCACA	.	81	23	109	0	G|1.000;T|0.000	515	T	158242731	G	T	158242731	3	4	160	1	0	0	0	0	1	0	0	0	6768	971	34	3	884	3	GRIA2	4	158242731	Missense_Mutation	SNP	G	TCGA-G3-A7M8-01A-11D-A33Q-10		158242731	32911545	12	20469											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6602579	6602579	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	NSUN2	NM_017755	exon18	c.T1992C	p.D664D	CGCAGAATCTGGT	.	72	25	91	0	.	91	G	6602579	A	G	6602579	2	3	160	1	0	0	0	0	0	0	0	1	10678	98	4	2		2	NSUN2	5	6602579	Silent	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10		6602579	174312681	13	20470											
CLVS2	134829	broad.mit.edu;bcgsc.ca	37	6	123319206	123319206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	CLVS2	NM_001010852	exon2	c.G284A	p.G95D	ACCCTGGCATCAA	.	127	9	137	0	.	27	A	123319206	G	A	123319206	3	1	160	1	0	0	0	0	1	0	0	0	3572	1203	42	3	286	3	CLVS2	6	123319206	Missense_Mutation	SNP	G	TCGA-G3-A7M8-01A-11D-A33Q-10		123319206	47795861	14	20471											
ABCA13	154664	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	48273680	48273680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ABCA13	NM_152701	exon8	c.A829T	p.K277X	GATCTCAAATCCC	.	77	8	116	0	.	521	T	48273680	A	T	48273680	4	4	160	1	0	0	0	0	0	1	0	0	31	131	5	4	688	4	ABCA13	7	48273680	Nonsense_Mutation	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10		48273680	110864983	15	20472											
TNKS	8658	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9578010	9578010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TNKS	NM_003747	exon12	c.A1876G	p.T626A	GGCTTCACAGCAG	.	121	33	132	1	.	660	G	9578010	A	G	9578010	3	3	160	1	0	0	0	0	1	0	0	0	16316	159	6	2	1922	2	TNKS	8	9578010	Missense_Mutation	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10		9578010	136786012	16	20473											
OR56B4	196335	broad.mit.edu;bcgsc.ca	37	11	6129724	6129724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	OR56B4	NM_001005181	exon1	c.C716T	p.A239V	CAGAAGCAATGTC	.	118	8	107	0	.	68	T	6129724	C	T	6129724	3	4	160	1	0	0	0	0	1	0	0	0	11138	710	25	3	718	3	OR56B4	11	6129724	Missense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10		6129724	128876792	17	20474											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62286773	62286773	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	AHNAK	NM_001620	exon5	c.A15116T	p.K5039I	CCCTGTTTTTTGG	.	126	28	138	0	.	109	A	62286773	T	A	62286773	3	1	160	1	0	0	0	0	1	0	0	0	414	1841	64	4	2676	4	AHNAK	11	62286773	Missense_Mutation	SNP	T	TCGA-G3-A7M8-01A-11D-A33Q-10	56157049	62286773	72719743	18	20475											
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94352999	94352999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PIWIL4	NM_152431	exon18	c.C2242A	p.Q748K	ACTGTACAGAACC	.	152	54	186	1	.	91	A	94352999	C	A	94352999	3	1	160	1	0	0	0	0	1	0	0	0	11960	479	17	3	2312	3	PIWIL4	11	94352999	Missense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	32066226	94352999	40653517	19	20476											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101679570	101679570	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	UTP20	NM_014503	exon4	c.T237C	p.N79N	ATTCAATCAGTTG	.	89	32	85	0	.	155	C	101679570	T	C	101679570	2	2	160	1	0	0	0	0	0	0	0	1	17096	1432	50	2		2	UTP20	12	101679570	Silent	SNP	T	TCGA-G3-A7M8-01A-11D-A33Q-10		101679570	32172325	20	20477											
PTGDR	5729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52735240	52735240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PTGDR	NM_000953	exon1	c.G708A	p.P236P	GCACCCGCGCTCC	.	48	12	34	0	.	524	A	52735240	G	A	52735240	2	1	160	1	0	0	0	0	0	0	0	1	12741	1074	38	1		1	PTGDR	14	52735240	Silent	SNP	G	TCGA-G3-A7M8-01A-11D-A33Q-10		52735240	54614300	21	20478											
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34394935	34394935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PGBD4	NM_152595	exon1	c.A203C	p.D68A	CAAGTGACTCAGG	.	64	25	63	0	.	90	C	34394935	A	C	34394935	3	2	160	1	0	0	0	0	1	0	0	0	11783	275	10	5	205	5	PGBD4	15	34394935	Missense_Mutation	SNP	A	TCGA-G3-A7M8-01A-11D-A33Q-10		34394935	68136457	22	20479											
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	71329548	71329548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRRC49	NM_001199017	exon15	c.C1749T	p.S583S	AGAATCCAAAGGA	.	349	31	407	0	.	91	T	71329548	C	T	71329548	2	4	160	1	0	0	0	0	0	0	0	1	9006	581	21	3		3	LRRC49	15	71329548	Silent	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	36934613	71329548	31201844	23	20480											
C16orf59	80178	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2514087	2514087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	C16orf59	NM_025108	exon9	c.G1012A	p.G338R	CCCCCCGGAGCCT	.	92	9	97	0	.	90	A	2514087	G	A	2514087	3	1	160	1	0	0	0	0	1	0	0	0	1823	1117	39	1	1046	1	C16orf59	16	2514087	Missense_Mutation	SNP	G	TCGA-G3-A7M8-01A-11D-A33Q-10		2514087	87840666	24	20481											
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46688035	46688035	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HOXB7	NM_004502	exon1	c.G246T	p.P82P	GGAACTCGGCTCG	.	127	34	156	0	.	90	A	46688035	C	A	46688035	2	1	160	1	0	0	0	0	0	0	0	1	7306	871	31	1		1	HOXB7	17	46688035	Silent	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10		46688035	34507175	25	20482											
APOH	350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	64210603	64210603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOH	NM_000042	exon7	c.A950C	p.D317A	GTGCCATCTATAC	.	130	9	197	0	.	90	G	64210603	T	G	64210603	3	3	160	1	0	0	0	0	1	0	0	0	804	1435	50	5	95	5	APOH	17	64210603	Missense_Mutation	SNP	T	TCGA-G3-A7M8-01A-11D-A33Q-10	17522568	64210603	16984607	26	20483											
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	3532454	3532454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	FZR1	NM_001136198	exon10	c.C1048T	p.Q350X	GTGCAGCAGTACA	.	51	18	68	0	.	227	T	3532454	C	T	3532454	4	4	160	1	0	0	0	0	0	1	0	0	6138	711	25	3	1086	3	FZR1	19	3532454	Nonsense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10		3532454	55596529	27	20484											
INSR	3643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7120659	7120659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	INSR	NM_000208	exon20	c.G3631A	p.G1211R	AGACCCCATCCTT	.	88	37	110	0	.	1381	T	7120659	C	T	7120659	3	4	160	1	0	0	0	0	1	0	0	0	7773	594	21	3	529	3	INSR	19	7120659	Missense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	3588205	7120659	52008324	28	20485											
ZNF91	7644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23557476	23557476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ZNF91	NM_003430	exon2	c.G121T	p.V41L	ACATCACATTCCT	.	291	102	326	1	.	90	A	23557476	C	A	23557476	3	1	160	1	0	0	0	0	1	0	0	0	18197	478	17	3	3466	3	ZNF91	19	23557476	Missense_Mutation	SNP	C	TCGA-G3-A7M8-01A-11D-A33Q-10	16436817	23557476	35571507	29	20486											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118281508	118281508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	KIAA1210	NM_020721	exon2	c.A338G	p.D113G	GCCAGATCCCCAA	.	62	9	55	0	.	67	C	118281508	T	C	118281508	3	2	160	1	0	0	0	0	1	0	0	0	8214	1435	50	2	4843	2	KIAA1210	23	118281508	Missense_Mutation	SNP	T	TCGA-G3-A7M8-01A-11D-A33Q-10		118281508	36989052	30	20487											
GCLM	2730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94354618	94354618	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GCLM	NM_002061	exon7	c.G753A	p.S251S	AATGACCGAATAC	.	47	19	73	0	.	91	T	94354618	C	T	94354618	2	4	161	1	0	0	0	0	0	0	0	1	6296	639	23	1		1	GCLM	1	94354618	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10		94354618	154896003	1	20488											
ZNF697	90874	bcgsc.ca;mdanderson.org	37	1	120165473	120165473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF697	NM_001080470	exon3	c.G1493T	p.C498F	TTGCCGCACTCGA	.	50	22	42	2	.	23	A	120165473	C	A	120165473	3	1	161	1	0	0	0	0	1	0	0	0	18097	710	25	3	148	3	ZNF697	1	120165473	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	25810855	120165473	129085148	2	20489											
FCGR1A	2209	broad.mit.edu;bcgsc.ca	37	1	149755799	149755799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FCGR1A	NM_000566	exon3	c.T293A	p.L98Q	TACAGCTGGAAAT	.	294	91	331	0	.	23	A	149755799	T	A	149755799	3	1	161	1	0	0	0	0	1	0	0	0	5779	1580	55	4	303	4	FCGR1A	1	149755799	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	29590326	149755799	99494822	3	20490											
CGN	57530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151502577	151502577	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CGN	NM_020770	exon12	c.C2299T	p.L767L	GACAAGCTGCAGC	.	69	9	56	0	.	93	T	151502577	C	T	151502577	2	4	161	1	0	0	0	0	0	0	0	1	3303	796	28	3		3	CGN	1	151502577	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	1746778	151502577	97748044	4	20491											
SPRR4	163778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152944518	152944518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SPRR4	NM_173080	exon2	c.A152C	p.K51T	AGGTCAAGAAGCA	.	81	8	86	0	.	68	C	152944518	A	C	152944518	3	2	161	1	0	0	0	0	1	0	0	0	15103	72	3	5	154	5	SPRR4	1	152944518	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	1441941	152944518	96306103	5	20492											
NUP210L	91181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154067567	154067567	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NUP210L	NM_001159484	exon15	c.G2031C	p.G677G	AGGACCCCCTTCA	.	60	23	98	1	.	77	G	154067567	C	G	154067567	2	3	161	1	0	0	0	0	0	0	0	1	10761	610	22	4		4	NUP210L	1	154067567	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	1123049	154067567	95183054	6	20493											
NTRK1	4914	broad.mit.edu;bcgsc.ca	37	1	156843727	156843727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NTRK1	NM_001012331	exon8	c.T1153C	p.F385L	TTCGAGTTCAACC	.	76	26	67	2	.	1393	C	156843727	T	C	156843727	3	2	161	1	0	0	0	0	1	0	0	0	10706	1725	60	2	1313	2	NTRK1	1	156843727	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	2776160	156843727	92406894	7	20494											
OR10T2	128360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158368833	158368833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OR10T2	NM_001004475	exon1	c.G424T	p.G142W	CCAACCCCAGCCT	.	57	21	71	2	.	70	A	158368833	C	A	158368833	3	1	161	1	0	0	0	0	1	0	0	0	10919	623	22	3	522	3	OR10T2	1	158368833	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	1525106	158368833	90881788	8	20495											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200945972	200945972	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	KIF21B	NM_001252102	exon32	c.C4375T	p.L1459L	CCGTCAGGCACAT	.	33	13	52	0	.	96	A	200945972	G	A	200945972	2	1	161	1	0	0	0	0	0	0	0	1	8289	991	35	3		3	KIF21B	1	200945972	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	42577139	200945972	48304649	9	20496											
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226923399	226923399	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITPKB	NM_002221	exon2	c.A1761C	p.G587G	AGGGCTTCCCTGC	.	40	15	40	0	.	230	G	226923399	T	G	226923399	2	3	161	1	0	0	0	0	0	0	0	1	7918	1770	62	5		5	ITPKB	1	226923399	Silent	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	25977427	226923399	22327222	10	20497											
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228496800	228496800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OBSCN	NM_001271223	exon59	c.C15611T	p.A5204V	GTCCAGCTCCTGA	.	25	11	29	0	.	403	T	228496800	C	T	228496800	3	4	161	1	0	0	0	0	1	0	0	0	10812	811	28	3	12926	3	OBSCN	1	228496800	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	1573401	228496800	20753821	11	20498											
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237711846	237711846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR2	NM_001035	exon26	c.G3022T	p.A1008S	GTGTGGGCGCGGG	.	56	16	74	1	.	158	T	237711846	G	T	237711846	3	4	161	1	0	0	0	0	1	0	0	0	13769	1203	42	3	3124	3	RYR2	1	237711846	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	9215046	237711846	11538775	12	20499											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11716535	11716535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GREB1	NM_148903	exon5	c.T511C	p.F171L	ACGGAATTCTCCA	.	165	37	147	0	.	91	C	11716535	T	C	11716535	3	2	161	1	0	0	0	0	1	0	0	0	6760	1493	52	2	525	2	GREB1	2	11716535	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10		11716535	231482838	13	20500											
TMEM214	54867	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	27260450	27260450	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMEM214	NM_017727	exon9	c.G1032A	p.Q344Q	GTGTCAGCTCTAC	.	55	25	91	1	.	115	A	27260450	G	A	27260450	2	1	161	1	0	0	0	0	0	0	0	1	16134	962	34	3		3	TMEM214	2	27260450	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	15543915	27260450	215938923	14	20501											
FAHD2B	151313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97751541	97751541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FAHD2B	NM_199336	exon5	c.C580T	p.R194C	AGTCACGAGCACT	.	98	44	137	0	.	90	A	97751541	G	A	97751541	3	1	161	1	0	0	0	0	1	0	0	0	5374	1058	37	1	380	1	FAHD2B	2	97751541	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	70491091	97751541	145447832	15	20502											
RNF149	284996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101911551	101911551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RNF149	NM_173647	exon2	c.A553G	p.I185V	CCCCTATGGTCAT	.	66	14	89	0	.	290	C	101911551	T	C	101911551	3	2	161	1	0	0	0	0	1	0	0	0	13450	1464	51	2	673	2	RNF149	2	101911551	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	4160010	101911551	141287822	16	20503											
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120005515	120005515	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	STEAP3	NM_182915	exon4	c.C783A	p.P261P	GCTGCCCGTGTCC	.	43	21	32	0	.	91	A	120005515	C	A	120005515	2	1	161	1	0	0	0	0	0	0	0	1	15278	639	23	1		1	STEAP3	2	120005515	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	18093964	120005515	123193858	17	20504											
ARHGAP15	55843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144314011	144314011	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ARHGAP15	NM_018460	exon11	c.C960A	p.G320G	TAGTGGCAATCTG	.	50	24	68	1	.	653	A	144314011	C	A	144314011	2	1	161	1	0	0	0	0	0	0	0	1	866	697	25	3		3	ARHGAP15	2	144314011	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	24308496	144314011	98885362	18	20505											
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164468244	164468244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FIGN	NM_018086	exon3	c.G98C	p.R33P	GGAGACCGAGTGG	.	64	21	77	1	.	156	G	164468244	C	G	164468244	3	3	161	1	0	0	0	0	1	0	0	0	5891	652	23	4	2185	4	FIGN	2	164468244	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	20154233	164468244	78731129	19	20506											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216256381	216256381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FN1	NM_212482	exon26	c.C4226A	p.P1409H	TCTGAAGGAGAAA	.	66	21	44	0	.	584	T	216256381	G	T	216256381	3	4	161	1	0	0	0	0	1	0	0	0	5962	1000	35	3	3291	3	FN1	2	216256381	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	51788137	216256381	26942992	20	20507											
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9759770	9759770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CPNE9	.	.	.	.	GCGCCTATGCCAT	.	40	15	59	0	.	70	G	9759770	A	G	9759770	3	3	161	1	0	0	0	0	1	0	0	0	3819	449	16	2	1047	2	CPNE9	3	9759770	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10		9759770	188262660	21	20508											
OGG1	4968	ucsc.edu;bcgsc.ca	37	3	9792767	9792767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OGG1	NM_016819	exon2	c.G276T	p.E92D	AGACGAGCTGGAG	.	52	5	56	0	.	660	T	9792767	G	T	9792767	3	4	161	1	0	0	0	0	1	0	0	0	10845	962	34	3	282	3	OGG1	3	9792767	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	32997	9792767	188229663	22	20509											
PRSS50	29122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46755757	46755757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PRSS50	NM_013270	exon4	c.G705T	p.K235N	ATGGTCCTTCAAC	.	39	20	31	0	.	90	A	46755757	C	A	46755757	3	1	161	1	0	0	0	0	1	0	0	0	12631	680	24	3	464	3	PRSS50	3	46755757	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	36962990	46755757	151266673	23	20510											
NBEAL2	23218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47040281	47040281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NBEAL2	NM_015175	exon23	c.A3296G	p.E1099G	CGAGGGAGTTCCT	.	31	9	48	1	.	69	G	47040281	A	G	47040281	3	3	161	1	0	0	0	0	1	0	0	0	10189	304	11	2	3386	2	NBEAL2	3	47040281	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	284524	47040281	150982149	24	20511											
SETD2	29072	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47164729	47164729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SETD2	NM_014159	exon3	c.A1397G	p.K466R	GTCTTCTTATACT	.	48	23	71	1	.	1273	C	47164729	T	C	47164729	3	2	161	1	0	0	0	0	1	0	0	0	14131	1609	56	2	6373	2	SETD2	3	47164729	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	124448	47164729	150857701	25	20512											
STAB1	23166	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52547186	52547186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	STAB1	NM_015136	exon30	c.G3199T	p.A1067S	GAGCTGGCCCGGC	.	113	32	148	2	.	139	T	52547186	G	T	52547186	3	4	161	1	0	0	0	0	1	0	0	0	15236	1203	42	3	3317	3	STAB1	3	52547186	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	5382457	52547186	145475244	26	20513											
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53851908	53851908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CHDH	NM_018397	exon9	c.A1681G	p.I561V	TCATGATTGTGGG	.	56	25	88	0	.	91	C	53851908	T	C	53851908	3	2	161	1	0	0	0	0	1	0	0	0	3333	1493	52	2	107	2	CHDH	3	53851908	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	1304722	53851908	144170522	27	20514											
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111764772	111764772	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMPRSS7	NM_001042575	exon4	c.G334C	p.D112H	GACATGGACTCTG	.	151	45	177	0	.	70	C	111764772	G	C	111764772	3	2	161	1	0	0	0	0	1	0	0	0	16249	1174	41	4	344	4	TMPRSS7	3	111764772	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	57912864	111764772	86257658	28	20515											
AMOTL2	51421	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	134076549	134076549	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	AMOTL2	NM_016201	exon10	c.T2341G	p.X781G	TCCTTCAGATCAG	.	33	5	44	0	.	135	C	134076549	A	C	134076549	3	2	161	1	0	0	0	0	1	0	0	0	584	201	7	5	5	5	AMOTL2	3	134076549	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	22311777	134076549	63945881	29	20516											
PTX3	5806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157160183	157160183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PTX3	NM_002852	exon3	c.G561A	p.M187I	CCCAATGCGTTCC	.	34	11	27	0	.	514	A	157160183	G	A	157160183	3	1	161	1	0	0	0	0	1	0	0	0	12822	1319	46	3	571	3	PTX3	3	157160183	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	23083634	157160183	40862247	30	20517											
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164737493	164737493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SI	NM_001041	exon28	c.C3320A	p.P1107Q	TCTGATGGCAGGC	.	73	23	85	0	.	104	T	164737493	G	T	164737493	3	4	161	1	0	0	0	0	1	0	0	0	14297	1348	47	3	2247	3	SI	3	164737493	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	7577310	164737493	33284937	31	20518											
TP63	8626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	189526152	189526152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TP63	NM_001114979	exon4	c.C416T	p.A139V	ACCACGCGCAGAA	.	59	15	62	0	.	421	T	189526152	C	T	189526152	3	4	161	1	0	0	0	0	1	0	0	0	16389	768	27	1	476	1	TP63	3	189526152	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	24788659	189526152	8496278	32	20519											
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6303650	6303650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	WFS1	NM_001145853	exon8	c.A2128C	p.T710P	CGCGTGACTGACA	.	34	11	31	0	.	91	C	6303650	A	C	6303650	3	2	161	1	0	0	0	0	1	0	0	0	17357	275	10	5	2154	5	WFS1	4	6303650	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10		6303650	184850626	33	20520											
TADA2B	93624	ucsc.edu;bcgsc.ca	37	4	7056061	7056061	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TADA2B	NM_152293	exon2	c.C543T	p.A181A	GGATGCCGAGACG	.	52	6	54	0	.	68	T	7056061	C	T	7056061	2	4	161	1	0	0	0	0	0	0	0	1	15508	639	23	1		1	TADA2B	4	7056061	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	752411	7056061	184098215	34	20521											
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44693809	44693809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GUF1	NM_021927	exon13	c.T1606C	p.Y536H	TCTGGATATGCTA	.	41	15	59	0	.	91	C	44693809	T	C	44693809	3	2	161	1	0	0	0	0	1	0	0	0	6899	1406	49	2	1656	2	GUF1	4	44693809	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	37637748	44693809	146460467	35	20522											
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	47850329	47850329	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NFXL1	NM_152995	exon23	c.A2587T	p.R863X	TCAGTCTGTTTTC	.	114	36	146	0	.	524	A	47850329	T	A	47850329	4	1	161	1	0	0	0	0	0	1	0	0	10388	1588	55	4	152	4	NFXL1	4	47850329	Nonsense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	3156520	47850329	143303947	36	20523											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79295351	79295351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FRAS1	NM_001166133	exon25	c.G3097T	p.V1033F	CAGTGTGTCCAGG	.	33	21	59	0	.	68	T	79295351	G	T	79295351	3	4	161	1	0	0	0	0	1	0	0	0	6042	1377	48	3	3195	3	FRAS1	4	79295351	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	31445022	79295351	111858925	37	20524											
DSPP	1834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88535262	88535262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DSPP	NM_014208	exon5	c.A1448G	p.N483S	GTGACAATAACAG	.	37	24	87	0	.	90	G	88535262	A	G	88535262	3	3	161	1	0	0	0	0	1	0	0	0	4782	101	4	2	1462	2	DSPP	4	88535262	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	9239911	88535262	102619014	38	20525											
CFI	3426	broad.mit.edu;bcgsc.ca	37	4	110682850	110682850	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CFI	NM_000204	exon5	c.483-2A>T	.	CACCTCTGCAAAT	.	14	7	29	0	.	90	A	110682850	T	A	110682850	5	1	161	1	0	0	0	0	0	0	1	0	3289	1594	55	4	1310	4	CFI	4	110682850	Splice_Site	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	22147588	110682850	80471426	39	20526											
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164272303	164272303	+	Missense_Mutation	SNP	C	C	T	rs146231711		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NPY5R	NM_006174	exon4	c.C878T	p.T293I	AGAAGACAGCATG	.	15	9	55	0	C|1.000;T|0.000	523	T	164272303	C	T	164272303	3	4	161	1	0	0	0	0	1	0	0	0	10610	478	17	3	880	3	NPY5R	4	164272303	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	53589453	164272303	26881973	40	20527											
HELT	391723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185941802	185941802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HELT	NM_001029887	exon4	c.C860T	p.A287V	GCCCAGCGCAGCA	.	16	13	11	0	.	226	T	185941802	C	T	185941802	3	4	161	1	0	0	0	0	1	0	0	0	7048	768	27	1	874	1	HELT	4	185941802	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	21669499	185941802	5212474	41	20528											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89948314	89948314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPR98	NM_032119	exon19	c.C3568T	p.H1190Y	ATTCTCCATGCTT	.	72	39	148	0	.	103	T	89948314	C	T	89948314	3	4	161	1	0	0	0	0	1	0	0	0	6721	594	21	3	3642	3	GPR98	5	89948314	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10		89948314	90966946	42	20529											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101813521	101813521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLCO6A1	NM_173488	exon3	c.G661A	p.G221S	ATATACCACTGCT	.	25	17	95	0	.	96	T	101813521	C	T	101813521	3	4	161	1	0	0	0	0	1	0	0	0	14732	594	21	3	1542	3	SLCO6A1	5	101813521	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	11865207	101813521	79101739	43	20530											
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115323605	115323605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_173800	exon4	c.G1074C	p.L358F	GGATTTGTTTAAT	.	95	13	186	0	.	.	C	115323605	G	C	115323605	3	2	161	1	0	0	0	0	1	0	0	0	834	1368	48	4	1088	4	AQPEP	5	115323605	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	13510084	115323605	65591655	44	20531											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215989	140215989	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDHA7	NM_031852	exon1	c.A2021T	p.Q674L	GCGGCCAGGCACC	.	24	15	26	0	.	94	T	140215989	A	T	140215989	3	4	161	1	0	0	0	0	1	0	0	0	11529	188	7	4	2023	4	PCDHA7	5	140215989	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	24892384	140215989	40699271	45	20532											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140573688	140573688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDHB10	NM_018930	exon1	c.C1563A	p.Y521X	GGACTACGAGGCC	.	59	17	71	0	.	92	A	140573688	C	A	140573688	4	1	161	1	0	0	0	0	0	1	0	0	11535	547	19	1	1565	1	PCDHB10	5	140573688	Nonsense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	357699	140573688	40341572	46	20533											
RPP40	10799	broad.mit.edu;bcgsc.ca	37	6	5000046	5000050	+	Frame_Shift_Del	DEL	ATTTC	ATTTC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	ATTTC	ATTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RPP40	NM_006638	exon4	c.426_430del	p.142_144del	TACTAAATTTCAT	.	93	9	122	0	.	90	-	5000050	ATTTC	-	5000046	7	5	161	1	0	1	0	1	0	0	0	0	13614	101	4	0	681	0	RPP40	6	5000046	Frame_Shift_Del	DEL	ATTTC	TCGA-G3-A7M9-01A-23D-A34Z-10		5000046	166115021	47	20534											
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30866689	30866689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DDR1	NM_013994	exon16	c.G2494T	p.V832L	AGTGACGTGTGGG	.	78	31	83	0	.	1403	T	30866689	G	T	30866689	3	4	161	1	0	0	0	0	1	0	0	0	4336	1145	40	1	2556	1	DDR1	6	30866689	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	25866643	30866689	140248378	48	20535											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33639857	33639857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITPR3	NM_002224	exon22	c.T2780C	p.M927T	CCACCATGGTGCT	.	31	11	33	0	.	1085	C	33639857	T	C	33639857	3	2	161	1	0	0	0	0	1	0	0	0	7922	1464	51	2	2866	2	ITPR3	6	33639857	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	2773168	33639857	137475210	49	20536											
TDRD6	221400	bcgsc.ca;mdanderson.org	37	6	46660241	46660241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TDRD6	NM_001168359	exon1	c.A4376T	p.E1459V	GATGGGAAGTTAT	.	31	10	37	1	.	138	T	46660241	A	T	46660241	3	4	161	1	0	0	0	0	1	0	0	0	15731	246	9	4	4378	4	TDRD6	6	46660241	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	13020384	46660241	124454826	50	20537											
MUT	4594	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49427174	49427174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MUT	NM_000255	exon2	c.A6T	p.L2F	AGCTCTTAACATG	.	18	8	28	0	.	91	A	49427174	T	A	49427174	3	1	161	1	0	0	0	0	1	0	0	0	9991	1751	61	4	2294	4	MUT	6	49427174	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	2766933	49427174	121687893	51	20538											
TFAP2D	83741	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50740396	50740396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TFAP2D	NM_172238	exon8	c.C1178T	p.A393V	TATGTGCAGCTCT	.	48	19	63	1	.	159	T	50740396	C	T	50740396	3	4	161	1	0	0	0	0	1	0	0	0	15787	710	25	3	1208	3	TFAP2D	6	50740396	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	1313222	50740396	120374671	52	20539											
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76720891	76720891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	IMPG1	NM_001563	exon8	c.A858T	p.L286F	AAATCCTAACACA	.	86	36	116	0	.	93	A	76720891	T	A	76720891	3	1	161	1	0	0	0	0	1	0	0	0	7728	1519	53	4	1575	4	IMPG1	6	76720891	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	25980495	76720891	94394176	53	20540											
MAP3K7	6885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	91269811	91269811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MAP3K7	NM_145333	exon5	c.G466T	p.D156Y	TCAGGTCCCTGTG	.	93	46	169	0	.	980	A	91269811	C	A	91269811	3	1	161	1	0	0	0	0	1	0	0	0	9255	855	30	3	1406	3	MAP3K7	6	91269811	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	14548920	91269811	79845256	54	20541											
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	94120578	94120578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	EPHA7	NM_004440	exon3	c.G473A	p.G158D	AGGTCACCTTGGG	.	80	28	131	0	.	1453	T	94120578	C	T	94120578	3	4	161	1	0	0	0	0	1	0	0	0	5172	507	18	3	2583	3	EPHA7	6	94120578	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	2850767	94120578	76994489	55	20542											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	101166124	101166124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ASCC3	NM_006828	exon12	c.G1906A	p.E636K	TGGATTCCACCTA	.	49	19	75	0	.	96	T	101166124	C	T	101166124	3	4	161	1	0	0	0	0	1	0	0	0	1033	864	30	3	4826	3	ASCC3	6	101166124	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	7045546	101166124	69948943	56	20543											
TAAR1	134864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132966704	132966704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TAAR1	NM_138327	exon1	c.A439G	p.S147G	TCCAACTAATGAA	.	49	17	77	0	.	90	C	132966704	T	C	132966704	3	2	161	1	0	0	0	0	1	0	0	0	15486	1522	53	2	584	2	TAAR1	6	132966704	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	31800580	132966704	38148363	57	20544											
THBS2	7058	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169637837	169637837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	THBS2	NM_003247	exon9	c.G1183A	p.V395M	ACGTCACGGAGCA	.	19	5	25	0	.	95	T	169637837	C	T	169637837	3	4	161	1	0	0	0	0	1	0	0	0	15851	536	19	1	2395	1	THBS2	6	169637837	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	36671133	169637837	1477230	58	20545											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	48431663	48431663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ABCA13	NM_152701	exon38	c.G11800T	p.E3934X	GTCCGGGAACATT	.	56	21	67	0	.	521	T	48431663	G	T	48431663	4	4	161	1	0	0	0	0	0	1	0	0	31	1175	41	3	11779	3	ABCA13	7	48431663	Nonsense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		48431663	110707000	59	20546											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82531973	82531973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCLO	NM_014510	exon9	c.G13522A	p.V4508I	CTGAAACTGTGTG	.	78	27	119	0	.	29	T	82531973	C	T	82531973	3	4	161	1	0	0	0	0	1	0	0	0	11583	565	20	3	1991	3	PCLO	7	82531973	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	34100310	82531973	76606690	60	20547											
HEPACAM2	253012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92837990	92837990	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HEPACAM2	NM_001039372	exon4	c.A915T	p.K305N	GGCTACTTTCTCA	.	97	32	134	0	.	157	A	92837990	T	A	92837990	3	1	161	1	0	0	0	0	1	0	0	0	7053	1606	56	4	501	4	HEPACAM2	7	92837990	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	10306017	92837990	66300673	61	20548											
RINT1	60561	broad.mit.edu;ucsc.edu	37	7	105189009	105189009	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RINT1	NM_021930	exon7	c.T848A	p.L283X	ATGAATTACTTAC	.	62	6	88	0	.	517	A	105189009	T	A	105189009	4	1	161	1	0	0	0	0	0	1	0	0	13376	1764	61	4	874	4	RINT1	7	105189009	Nonsense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	12351019	105189009	53949654	62	20549											
NUP205	23165	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135300725	135300725	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NUP205	NM_015135	exon24	c.A3372G	p.L1124L	AGAGCTAAGGGTA	.	48	11	83	1	.	207	G	135300725	A	G	135300725	2	3	161	1	0	0	0	0	0	0	0	1	10759	349	13	2		2	NUP205	7	135300725	Silent	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	30111716	135300725	23837938	63	20550											
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9538246	9538246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TNKS	NM_003747	exon5	c.A1043T	p.E348V	GTAATGAAGAAAA	.	121	46	143	0	.	660	T	9538246	A	T	9538246	3	4	161	1	0	0	0	0	1	0	0	0	16316	246	9	4	1061	4	TNKS	8	9538246	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10		9538246	136825776	64	20551											
GATA4	2626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11615852	11615852	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GATA4	NM_002052	exon7	c.C1197T	p.V399V	CCCTGTCCTCTCG	.	40	15	43	0	.	90	T	11615852	C	T	11615852	2	4	161	1	0	0	0	0	0	0	0	1	6256	842	30	3		3	GATA4	8	11615852	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	2077606	11615852	134748170	65	20552											
ADRA1A	148	ucsc.edu;bcgsc.ca	37	8	26627995	26627995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADRA1A	NM_033303	exon2	c.T1072C	p.Y358H	GGGTGTAGCCCAG	.	28	4	43	0	.	587	G	26627995	A	G	26627995	3	3	161	1	0	0	0	0	1	0	0	0	334	420	15	2	623	2	ADRA1A	8	26627995	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	15012143	26627995	119736027	66	20553											
GPR124	25960	broad.mit.edu;ucsc.edu	37	8	37691506	37691506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPR124	NM_032777	exon11	c.A1468G	p.M490V	GTGGACATGGCCA	.	48	5	56	0	.	157	G	37691506	A	G	37691506	3	3	161	1	0	0	0	0	1	0	0	0	6638	217	8	2	1489	2	GPR124	8	37691506	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	11063511	37691506	108672516	67	20554											
ADAM18	8749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39505913	39505913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADAM18	NM_014237	exon12	c.G1097C	p.R366T	ACTATAGATATTT	.	163	12	146	0	.	228	C	39505913	G	C	39505913	3	2	161	1	0	0	0	0	1	0	0	0	239	942	33	4	1143	4	ADAM18	8	39505913	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	1814407	39505913	106858109	68	20555											
ADAM18	8749	broad.mit.edu;bcgsc.ca	37	8	39505935	39505935	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADAM18	NM_014237	exon12	c.G1119A	p.E373E	ATTTGAGACTAAA	.	158	12	167	1	.	228	A	39505935	G	A	39505935	2	1	161	1	0	0	0	0	0	0	0	1	239	933	33	3		3	ADAM18	8	39505935	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	22	39505935	106858087	69	20556											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77768145	77768145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZFHX4	NM_024721	exon10	c.G8988A	p.M2996I	TTTCATGATCAAT	.	52	20	55	0	.	98	A	77768145	G	A	77768145	3	1	161	1	0	0	0	0	1	0	0	0	17632	1290	45	3	9022	3	ZFHX4	8	77768145	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	38262210	77768145	68595877	70	20557											
TRPS1	7227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116427295	116427295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRPS1	NM_014112	exon7	c.C2841A	p.N947K	AATGATGTTTAAA	.	122	53	173	2	.	229	T	116427295	G	T	116427295	3	4	161	1	0	0	0	0	1	0	0	0	16590	1368	48	3	1047	3	TRPS1	8	116427295	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	38659150	116427295	29936727	71	20558											
INSL4	3641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5231621	5231621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	INSL4	NM_002195	exon1	c.C98A	p.P33H	GTGGTCCCCGATT	.	48	11	55	0	.	90	A	5231621	C	A	5231621	3	1	161	1	0	0	0	0	1	0	0	0	7768	623	22	3	100	3	INSL4	9	5231621	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10		5231621	135981810	72	20559											
TEK	7010	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	27206621	27206621	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TEK	NM_000459	exon15	c.C2406A	p.A802A	TCTGGCCCTAAAC	.	29	10	50	1	.	1584	A	27206621	C	A	27206621	2	1	161	1	0	0	0	0	0	0	0	1	15748	610	22	3		3	TEK	9	27206621	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	21975000	27206621	114006810	73	20560											
DNAJB5	25822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34993331	34993331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DNAJB5	NM_001135004	exon3	c.A443C	p.D148A	ACCCAGACAAGAA	.	43	16	46	0	.	226	C	34993331	A	C	34993331	3	2	161	1	0	0	0	0	1	0	0	0	4623	275	10	5	323	5	DNAJB5	9	34993331	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	7786710	34993331	106220100	74	20561											
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267541	82267541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TLE4	NM_007005	exon7	c.C424A	p.H142N	CATGGACATGGTC	.	69	16	88	0	.	524	A	82267541	C	A	82267541	3	1	161	1	0	0	0	0	1	0	0	0	15938	478	17	3	450	3	TLE4	9	82267541	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	47274210	82267541	58945890	75	20562											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88967620	88967620	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZCCHC6	NM_024617	exon2	c.G495T	p.T165T	TTCTGACGTGGTT	.	140	37	201	0	.	92	A	88967620	C	A	88967620	2	1	161	1	0	0	0	0	0	0	0	1	17589	523	19	1		1	ZCCHC6	9	88967620	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	6700079	88967620	52245811	76	20563											
TSTD2	158427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100365038	100365038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TSTD2	NM_139246	exon10	c.T1264C	p.C422R	CTCCACAGTATGA	.	63	26	91	0	.	92	G	100365038	A	G	100365038	3	3	161	1	0	0	0	0	1	0	0	0	16672	188	7	2	290	2	TSTD2	9	100365038	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	11397418	100365038	40848393	77	20564											
C9orf156	51531	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100667207	100667207	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	C9orf156	NM_016481	exon5	c.G1134T	p.V378V	TGACAGCACAGCC	.	28	5	38	0	.	90	A	100667207	C	A	100667207	2	1	161	1	0	0	0	0	0	0	0	1	2465	697	25	3		3	C9orf156	9	100667207	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	302169	100667207	40546224	78	20565											
TRAF1	7185	ucsc.edu;bcgsc.ca	37	9	123675908	123675908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRAF1	NM_005658	exon5	c.G403C	p.E135Q	CAGACTCCAGGCC	.	32	4	43	0	.	229	G	123675908	C	G	123675908	3	3	161	1	0	0	0	0	1	0	0	0	16434	864	30	4	863	4	TRAF1	9	123675908	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	23008701	123675908	17537523	79	20566											
ENDOG	2021	broad.mit.edu;ucsc.edu	37	9	131584861	131584861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ENDOG	NM_004435	exon3	c.T866G	p.L289R	GCAGCCTCAAGGC	.	25	5	24	0	.	90	G	131584861	T	G	131584861	3	3	161	1	0	0	0	0	1	0	0	0	5115	1551	54	5	876	5	ENDOG	9	131584861	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	7908953	131584861	9628570	80	20567											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137630354	137630354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	COL5A1	NM_000093	exon10	c.G1424A	p.G475D	CAGAAGGCCCCGC	.	40	26	37	0	.	524	A	137630354	G	A	137630354	3	1	161	1	0	0	0	0	1	0	0	0	3696	1203	42	3	1462	3	COL5A1	9	137630354	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	6045493	137630354	3583077	81	20568											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	375432	375432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DIP2C	NM_014974	exon30	c.T3694C	p.S1232P	AGTAGGAGCAAAA	.	16	7	30	0	.	156	G	375432	A	G	375432	3	3	161	1	0	0	0	0	1	0	0	0	4529	304	11	2	1008	2	DIP2C	10	375432	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10		375432	135159315	82	20569											
FRMD4A	55691	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	13699408	13699408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FRMD4A	NM_018027	exon22	c.C2181A	p.S727R	GTCGGGGCTCCCG	.	25	10	18	0	.	229	T	13699408	G	T	13699408	3	4	161	1	0	0	0	0	1	0	0	0	6051	1194	42	3	950	3	FRMD4A	10	13699408	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	13323976	13699408	121835339	83	20570											
CUBN	8029	broad.mit.edu;ucsc.edu	37	10	16870834	16870834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CUBN	NM_001081	exon66	c.C10734A	p.S3578R	TGGAGAGCTGGCG	.	45	4	55	1	.	166	T	16870834	G	T	16870834	3	4	161	1	0	0	0	0	1	0	0	0	4051	962	34	3	145	3	CUBN	10	16870834	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	3171426	16870834	118663913	84	20571											
TRDMT1	1787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17202313	17202313	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRDMT1	NM_004412	exon6	c.T450C	p.S150S	GGTTGGAGATAAT	.	121	38	198	0	.	227	G	17202313	A	G	17202313	2	3	161	1	0	0	0	0	0	0	0	1	16464	291	11	2		2	TRDMT1	10	17202313	Silent	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	331479	17202313	118332434	85	20572											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26462717	26462717	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MYO3A	NM_017433	exon30	c.3524delC	p.T1175fs	AGGAAACCACCAA	.	61	27	75	0	.	1007	-	26462717	C	-	26462717	7	5	161	1	0	1	0	1	0	0	0	0	10076	507	18	0	3634	0	MYO3A	10	26462717	Frame_Shift_Del	DEL	C	TCGA-G3-A7M9-01A-23D-A34Z-10	9260404	26462717	109072030	86	20573											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568699	55568699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDH15	.	.	.	.	ACAGGGGCTGGTC	.	105	50	162	0	.	193	T	55568699	G	T	55568699	3	4	161	1	0	0	0	0	1	0	0	0	11511	1203	42	3	805	3	PCDH15	10	55568699	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	29105982	55568699	79966048	87	20574											
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61028335	61028335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FAM13C	NM_198215	exon8	c.T920C	p.F307S	TGTTCAAATTTTT	.	66	13	92	0	.	70	G	61028335	A	G	61028335	3	3	161	1	0	0	0	0	1	0	0	0	5454	14	1	2	865	2	FAM13C	10	61028335	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	5459636	61028335	74506412	88	20575											
ECD	11319	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74912126	74912126	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ECD	NM_001135752	exon7	c.A837C	p.P279P	CCGGTCTGGCACA	.	44	9	46	0	.	91	G	74912126	T	G	74912126	2	3	161	1	0	0	0	0	0	0	0	1	4888	1567	55	5		5	ECD	10	74912126	Silent	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	13883791	74912126	60622621	89	20576											
C10orf11	83938	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	77795792	77795792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	C10orf11	NM_032024	exon2	c.G74A	p.R25K	CATTCAGGAGCCT	.	33	14	56	1	.	90	A	77795792	G	A	77795792	3	1	161	1	0	0	0	0	1	0	0	0	1582	1000	35	3	80	3	C10orf11	10	77795792	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	2883666	77795792	57738955	90	20577											
PAX2	5076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102584502	102584502	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PAX2	NM_003987	exon9	c.G1086A	p.V362V	AATGGTGCCTGGT	.	21	9	21	0	.	90	A	102584502	G	A	102584502	2	1	161	1	0	0	0	0	0	0	0	1	11479	1306	46	3		3	PAX2	10	102584502	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	24788710	102584502	32950245	91	20578											
PDZD7	79955	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	102782138	102782138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PDZD7	NM_001195263	exon5	c.G547T	p.D183Y	CCACATCCACCCT	.	25	13	37	1	.	136	A	102782138	C	A	102782138	3	1	161	1	0	0	0	0	1	0	0	0	11704	855	30	3	1030	3	PDZD7	10	102782138	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	197636	102782138	32752609	92	20579											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108459041	108459041	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SORCS1	NM_001206572	exon9	c.C1344T	p.F448F	CAGGGTGAAGTAG	.	51	19	92	0	.	153	A	108459041	G	A	108459041	2	1	161	1	0	0	0	0	0	0	0	1	14930	1281	45	3		3	SORCS1	10	108459041	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	5676903	108459041	27075706	93	20580											
OR4C46	119749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51515655	51515655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OR4C46	NM_001004703	exon1	c.G374T	p.C125F	CCATCTGCAAGCC	.	70	38	100	0	.	69	T	51515655	G	T	51515655	3	4	161	1	0	0	0	0	1	0	0	0	11051	1319	46	3	376	3	OR4C46	11	51515655	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		51515655	83490861	94	20581											
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57080487	57080489	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TNKS1BP1	NM_033396	exon5	c.1673_1675del	p.558_559del	GACTCTCCCCATC	.	43	15	68	0	.	91	-	57080489	CCC	-	57080487	7	5	161	1	0	1	0	1	0	0	0	0	16317	864	30	0	3542	0	TNKS1BP1	11	57080487	In_Frame_Del	DEL	CCC	TCGA-G3-A7M9-01A-23D-A34Z-10	5564832	57080487	77926029	95	20582											
INPPL1	3636	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71943737	71943737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	INPPL1	NM_001567	exon15	c.G1780T	p.D594Y	GCCTTTGACATCT	.	38	10	41	1	.	660	T	71943737	G	T	71943737	3	4	161	1	0	0	0	0	1	0	0	0	7761	1290	45	3	1838	3	INPPL1	11	71943737	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	14863250	71943737	63062779	96	20583											
A2ML1	144568	bcgsc.ca;mdanderson.org	37	12	8994020	8994020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	A2ML1	NM_144670	exon11	c.T1136A	p.V379E	TTCTGGTGATTTA	.	71	26	77	2	.	93	A	8994020	T	A	8994020	3	1	161	1	0	0	0	0	1	0	0	0	5	1696	59	4	1178	4	A2ML1	12	8994020	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10		8994020	124857875	97	20584											
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	20893142	20893145	+	Frame_Shift_Del	DEL	GGAA	GGAA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GGAA	GGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLCO1C1	NM_017435	exon12	c.1573_1576del	p.525_526del	TGTGTGGGAATTG	.	77	28	100	0	.	97	-	20893145	GGAA	-	20893142	7	5	161	1	0	1	0	1	0	0	0	0	14725	1233	43	0	1615	0	SLCO1C1	12	20893142	Frame_Shift_Del	DEL	GGAA	TCGA-G3-A7M9-01A-23D-A34Z-10	11899122	20893142	112958753	98	20585											
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27787982	27787982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PPFIBP1	NM_003622	exon4	c.A204T	p.E68D	GAAAGAAGGCTTG	.	91	33	78	0	.	228	T	27787982	A	T	27787982	3	4	161	1	0	0	0	0	1	0	0	0	12313	69	3	4	210	4	PPFIBP1	12	27787982	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	6894840	27787982	106063913	99	20586											
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	30816574	30816574	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	IPO8	NM_006390	exon14	c.T1443G	p.L481L	TGCATGAAGTACC	.	28	13	22	0	.	227	C	30816574	A	C	30816574	2	2	161	1	0	0	0	0	0	0	0	1	7798	233	9	5		5	IPO8	12	30816574	Silent	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	3028592	30816574	103035321	100	20587											
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64814173	64814173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	XPOT	NM_007235	exon8	c.C715A	p.L239I	GAAGTTCTACGGG	.	72	25	76	0	.	652	A	64814173	C	A	64814173	3	1	161	1	0	0	0	0	1	0	0	0	17447	912	32	3	741	3	XPOT	12	64814173	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	33997599	64814173	69037722	101	20588											
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85277689	85277689	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLC6A15	NM_018057	exon5	c.C705A	p.A235A	GACCCAGGCAGCC	.	48	21	60	0	.	93	T	85277689	G	T	85277689	2	4	161	1	0	0	0	0	0	0	0	1	14678	987	35	3		3	SLC6A15	12	85277689	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	20463516	85277689	48574206	102	20589											
ACTR6	64431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	100594687	100594687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ACTR6	NM_022496	exon1	c.G58A	p.E20K	AGCCATGAAAATG	.	43	11	43	0	.	91	A	100594687	G	A	100594687	3	1	161	1	0	0	0	0	1	0	0	0	216	1291	45	3	60	3	ACTR6	12	100594687	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	15316998	100594687	33257208	103	20590											
SH2B3	10019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111885820	111885820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SH2B3	NM_005475	exon8	c.T1442C	p.L481P	TCTCCCTTCCTCA	.	32	9	47	0	.	91	C	111885820	T	C	111885820	3	2	161	1	0	0	0	0	1	0	0	0	14229	1609	56	2	1468	2	SH2B3	12	111885820	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	11291133	111885820	21966075	104	20591											
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125834213	125834213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMEM132B	NM_052907	exon2	c.C268T	p.P90S	TATGGCCCATTTT	.	67	20	51	0	.	185	T	125834213	C	T	125834213	3	4	161	1	0	0	0	0	1	0	0	0	16043	623	22	3	274	3	TMEM132B	12	125834213	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	13948393	125834213	8017682	105	20592											
FREM2	341640	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39263789	39263789	+	Missense_Mutation	SNP	G	G	T	rs7327915	byfrequency;alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FREM2	NM_207361	exon1	c.G2308T	p.V770L	TCAGTCGTGGTGA	.	35	18	52	0	G|0.960;A|0.040	100	T	39263789	G	T	39263789	3	4	161	1	0	0	0	0	1	0	0	0	6045	1145	40	1	2310	1	FREM2	13	39263789	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		39263789	75906089	106	20593											
GPC5	2262	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	92797096	92797096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPC5	NM_004466	exon7	c.G1415T	p.R472I	AGGGTAGATCACC	.	59	19	80	2	.	519	T	92797096	G	T	92797096	3	4	161	1	0	0	0	0	1	0	0	0	6601	942	33	3	1441	3	GPC5	13	92797096	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	53533307	92797096	22372782	107	20594											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	64593080	64593089	+	Frame_Shift_Del	DEL	TAAAAAATTG	TAAAAAATTG	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	TAAAAAATTG	TAAAAAATTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SYNE2	NM_182914	exon72	c.13590_13599del	p.4530_4533del	TTTGGATAAAAAA	.	58	18	66	0	.	164	-	64593089	TAAAAAATTG	-	64593080	7	5	161	1	0	1	0	1	0	0	0	0	15443	1403	49	0	13872	0	SYNE2	14	64593080	Frame_Shift_Del	DEL	TAAAAAATTG	TCGA-G3-A7M9-01A-23D-A34Z-10		64593080	42756460	108	20595											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102446826	102446826	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DYNC1H1	NM_001376	exon5	c.T900G	p.T300T	CCTGACTCTGGAT	.	28	11	50	0	.	98	G	102446826	T	G	102446826	2	3	161	1	0	0	0	0	0	0	0	1	4841	1538	54	5		5	DYNC1H1	14	102446826	Silent	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	37853746	102446826	4902714	109	20596											
PLD4	122618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105398614	105398614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PLD4	NM_138790	exon10	c.G1243T	p.V415L	GTGCCGGTGGGGA	.	34	13	39	0	.	651	T	105398614	G	T	105398614	3	4	161	1	0	0	0	0	1	0	0	0	12048	1261	44	3	1277	3	PLD4	14	105398614	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	2951788	105398614	1950926	110	20597											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33895514	33895514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR3	NM_001243996	exon18	c.G2113T	p.V705F	AATGGTGTTGGTG	.	41	29	100	0	.	520	T	33895514	G	T	33895514	3	4	161	1	0	0	0	0	1	0	0	0	13770	1377	48	3	2183	3	RYR3	15	33895514	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		33895514	68635878	111	20598											
MAP2K1	5604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66729188	66729188	+	Silent	SNP	G	G	A	rs139364105		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MAP2K1	NM_002755	exon3	c.G396A	p.A132A	TGGTGCGTTCTAC	.	27	17	39	0	G|0.999;A|0.001	978	A	66729188	G	A	66729188	2	1	161	1	0	0	0	0	0	0	0	1	9236	1132	40	1		1	MAP2K1	15	66729188	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	32833674	66729188	35802204	112	20599											
ARNT2	9915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80762629	80762629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ARNT2	NM_014862	exon4	c.A265G	p.M89V	TCCGACATGGTCC	.	20	8	50	0	.	175	G	80762629	A	G	80762629	3	3	161	1	0	0	0	0	1	0	0	0	966	217	8	2	279	2	ARNT2	15	80762629	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	14033441	80762629	21768763	113	20600											
GDPD3	79153	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30116234	30116234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GDPD3	NM_024307	exon10	c.C916A	p.H306N	GGTAGTGCCGCAG	.	30	5	32	0	.	90	T	30116234	G	T	30116234	3	4	161	1	0	0	0	0	1	0	0	0	6325	1319	46	3	44	3	GDPD3	16	30116234	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		30116234	60238519	114	20601											
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84444352	84444352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ATP2C2	NM_014861	exon6	c.G496T	p.V166F	AAGATGGTTCCTC	.	31	16	36	0	.	91	T	84444352	G	T	84444352	3	4	161	1	0	0	0	0	1	0	0	0	1144	1261	44	3	518	3	ATP2C2	16	84444352	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	54328118	84444352	5910401	115	20602											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7578264	7578270	+	Frame_Shift_Del	DEL	GATAAGA	GATAAGA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GATAAGA	GATAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	TP53,NS,carcinoma,-2	TP53	NM_000546	exon6	c.579_585del	p.193_195del	CACTCGGATAAGA	.	23	9	61	0	.	70225	-	7578270	GATAAGA	-	7578264	7	5	161	1	0	1	0	1	0	0	0	0	16378	1164	41	0	709	0	TP53	17	7578264	Frame_Shift_Del	DEL	GATAAGA	TCGA-G3-A7M9-01A-23D-A34Z-10		7578264	73616946	116	20603											
CDRT1	374286	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15522794	15522794	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CDRT1	NM_006382	exon1	c.C33T	p.A11A	ATAGGGGGCATTC	.	93	35	174	1	.	68	A	15522794	G	A	15522794	2	1	161	1	0	0	0	0	0	0	0	1	3174	1219	43	3		3	CDRT1	17	15522794	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	7944530	15522794	65672416	117	20604											
RNF135	84282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29326075	29326075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RNF135	NM_032322	exon5	c.T1165C	p.F389L	CTTGCCTTCTATT	.	54	5	66	0	.	227	C	29326075	T	C	29326075	3	2	161	1	0	0	0	0	1	0	0	0	13440	1609	56	2	1252	2	RNF135	17	29326075	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	13803281	29326075	51869135	118	20605											
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47587941	47587941	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NGFR	NM_002507	exon4	c.G736C	p.G246R	ACCCGAGGCACCA	.	30	15	33	0	.	947	C	47587941	G	C	47587941	3	2	161	1	0	0	0	0	1	0	0	0	10396	1000	35	4	750	4	NGFR	17	47587941	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	18261866	47587941	33607269	119	20606											
TOB1	10140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48940660	48940661	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TOB1	NM_005749	exon2	c.719_720insGC	p.P240fs	TGCTGTGGCTGCT	.	27	9	36	0	.	226	GC	48940661	-	GC	48940660	7	5	161	1	0	1	1	0	0	0	0	0	16344	1348	47	0	322	0	TOB1	17	48940660	Frame_Shift_Ins	INS	-	TCGA-G3-A7M9-01A-23D-A34Z-10	1352719	48940660	32254550	120	20607											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67287403	67287403	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ABCA5	NM_018672	exon11	c.G1560A	p.K520K	TGTACTCTTTCCT	.	58	18	101	0	.	93	T	67287403	C	T	67287403	2	4	161	1	0	0	0	0	0	0	0	1	35	912	32	3		3	ABCA5	17	67287403	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	18346743	67287403	13907807	121	20608											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73723340	73723340	+	Missense_Mutation	SNP	G	G	T	rs146966502	alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITGB4	NM_001005731	exon3	c.G145T	p.A49S	GACTGCGCCTACT	.	36	11	46	0	G|1.000;A|0.000	227	T	73723340	G	T	73723340	3	4	161	1	0	0	0	0	1	0	0	0	7897	1087	38	1	151	1	ITGB4	17	73723340	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	6435937	73723340	7471870	122	20609											
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74382080	74382096	+	Frame_Shift_Del	DEL	GGCGTGCTCCCGCGGCC	GGCGTGCTCCCGCGGCC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GGCGTGCTCCCGCGGCC	GGCGTGCTCCCGCGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SPHK1	NM_182965	exon3	c.283_299del	p.95_100del	CCCCGGGGCGTGC	.	28	10	32	0	.	1107	-	74382096	GGCGTGCTCCCGCGGCC	-	74382080	7	5	161	1	0	1	0	1	0	0	0	0	15045	1232	43	0	335	0	SPHK1	17	74382080	Frame_Shift_Del	DEL	GGCGTGCTCCCGCGGCC	TCGA-G3-A7M9-01A-23D-A34Z-10	658740	74382080	6813130	123	20610											
SEPT9	10801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	75303253	75303253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SEPT9	NM_001113491	exon2	c.G50C	p.R17P	GGCTCCGGAGGCT	.	33	17	42	0	.	659	C	75303253	G	C	75303253	3	2	161	1	0	0	0	0	1	0	0	0	14071	1116	39	4	56	4	SEPT9	17	75303253	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	921173	75303253	5891957	124	20611											
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77808471	77808471	+	Missense_Mutation	SNP	G	G	A	rs138355116		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	CBX4,abdomen,malignant_melanoma,0	CBX4	NM_003655	exon5	c.C970T	p.P324S	TGGGCGGCGCCTC	.	27	11	39	0	.	228	A	77808471	G	A	77808471	3	1	161	1	0	0	0	0	1	0	0	0	2720	1203	42	3	716	3	CBX4	17	77808471	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	2505218	77808471	3386739	125	20612											
VAPA	9218	broad.mit.edu;mdanderson.org	37	18	9914271	9914271	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	VAPA	NM_003574	exon1	c.G18T	p.G6G	CTCAGGGGCCATG	.	21	5	15	0	.	90	T	9914271	G	T	9914271	2	4	161	1	0	0	0	0	0	0	0	1	17118	1219	43	3		3	VAPA	18	9914271	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		9914271	68162977	126	20613											
TRIP10	9322	broad.mit.edu;bcgsc.ca	37	19	6750013	6750022	+	Frame_Shift_Del	DEL	AGCCCCAGAT	AGCCCCAGAT	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	AGCCCCAGAT	AGCCCCAGAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRIP10	NM_004240	exon11	c.1163_1172del	p.388_391del	GCTTGGAGCCCCA	.	28	9	37	0	.	228	-	6750022	AGCCCCAGAT	-	6750013	7	5	161	1	0	1	0	1	0	0	0	0	16551	304	11	0	1205	0	TRIP10	19	6750013	Frame_Shift_Del	DEL	AGCCCCAGAT	TCGA-G3-A7M9-01A-23D-A34Z-10		6750013	52378970	127	20614											
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6833726	6833726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	VAV1	NM_005428	exon18	c.C1713A	p.F571L	AGATTTCCCAGGA	.	28	15	36	0	.	1276	A	6833726	C	A	6833726	3	1	161	1	0	0	0	0	1	0	0	0	17128	854	30	3	1783	3	VAV1	19	6833726	Missense_Mutation	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	83713	6833726	52295257	128	20615											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38960151	38960151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR1	NM_001042723	exon27	c.G3763A	p.E1255K	CACTATGAGGTAA	.	19	13	29	0	.	100	A	38960151	G	A	38960151	3	1	161	1	0	0	0	0	1	0	0	0	13768	1291	45	3	3869	3	RYR1	19	38960151	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	32126425	38960151	20168832	129	20616											
RPL18	6141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49121059	49121059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RPL18	NM_000979	exon2	c.C79A	p.L27M	CCAACAGCCTCAG	.	42	27	46	0	.	90	T	49121059	G	T	49121059	3	4	161	1	0	0	0	0	1	0	0	0	13564	962	34	3	511	3	RPL18	19	49121059	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	10160908	49121059	10007924	130	20617											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53303883	53303883	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF28	NM_006969	exon4	c.T1215C	p.H405H	TCCAGTATGAATC	.	46	30	52	0	.	91	G	53303883	A	G	53303883	2	3	161	1	0	0	0	0	0	0	0	1	17810	446	16	2		2	ZNF28	19	53303883	Silent	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	4182824	53303883	5825100	131	20618											
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53855612	53855612	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_138374	exon4	c.1684delG	p.G562fs	TTTCGTGGGCAGT	.	45	25	53	0	.	.	-	53855612	G	-	53855612	7	5	161	1	0	1	0	1	0	0	0	0	18188	1348	47	0	1694	0	ZNF845	19	53855612	Frame_Shift_Del	DEL	G	TCGA-G3-A7M9-01A-23D-A34Z-10	551729	53855612	5273371	132	20619											
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54966690	54966690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	LENG8	NM_052925	exon8	c.G969A	p.A323A	GCAGGCGCGGCTG	.	22	8	25	0	.	91	A	54966690	G	A	54966690	2	1	161	1	0	0	0	0	0	0	0	1	8724	1074	38	1		1	LENG8	19	54966690	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	1111078	54966690	4162293	133	20620											
ZSCAN5B	342933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56704398	56704398	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZSCAN5B	NM_001080456	exon1	c.A24T	p.S8S	ACCCCATGAGAGT	.	38	6	46	0	.	24	A	56704398	T	A	56704398	2	1	161	1	0	0	0	0	0	0	0	1	18236	1451	51	4		4	ZSCAN5B	19	56704398	Silent	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	1737708	56704398	2424585	134	20621											
ZNF582	147948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56896171	56896171	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF582	NM_144690	exon5	c.G615A	p.G205G	GGCCTTCCCACAT	.	70	16	70	0	.	138	T	56896171	C	T	56896171	2	4	161	1	0	0	0	0	0	0	0	1	18011	842	30	3		3	ZNF582	19	56896171	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10	191773	56896171	2232812	135	20622											
KRTAP10-2	386679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45970816	45970816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	KRTAP10-2	NM_198693	exon1	c.T526A	p.S176T	ACGGGGAGGAGGT	.	18	7	25	0	.	135	T	45970816	A	T	45970816	3	4	161	1	0	0	0	0	1	0	0	0	8509	304	11	4	245	4	KRTAP10-2	21	45970816	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10		45970816	2159079	136	20623											
MYH9	4627	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36689429	36689429	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MYH9	NM_002473	exon30	c.G4041A	p.E1347E	CTCCTCCTCCTCC	.	18	4	26	0	.	292	T	36689429	C	T	36689429	2	4	161	1	0	0	0	0	0	0	0	1	10042	680	24	3		3	MYH9	22	36689429	Silent	SNP	C	TCGA-G3-A7M9-01A-23D-A34Z-10		36689429	14615137	137	20624											
TTLL12	23170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43575637	43575637	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TTLL12	NM_015140	exon5	c.C828T	p.A276A	GTGCTCGGCGGGC	.	20	9	24	0	.	90	A	43575637	G	A	43575637	2	1	161	1	0	0	0	0	0	0	0	1	16722	1103	39	1		1	TTLL12	22	43575637	Silent	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10	6886208	43575637	7728929	138	20625											
TUBGCP6	85378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50682494	50682494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TUBGCP6	NM_020461	exon1	c.A395G	p.Y132C	AGGAAGTAGTCTC	.	19	6	26	0	.	93	C	50682494	T	C	50682494	3	2	161	1	0	0	0	0	1	0	0	0	16767	1638	57	2	5164	2	TUBGCP6	22	50682494	Missense_Mutation	SNP	T	TCGA-G3-A7M9-01A-23D-A34Z-10	7106857	50682494	622072	139	20626											
AKAP4	8852	broad.mit.edu;bcgsc.ca	37	X	49957907	49957907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	AKAP4	NM_003886	exon5	c.C1457A	p.P486Q	TTGCATGGGTCTG	.	53	39	60	2	.	540	T	49957907	G	T	49957907	3	4	161	1	0	0	0	0	1	0	0	0	453	1348	47	3	1115	3	AKAP4	23	49957907	Missense_Mutation	SNP	G	TCGA-G3-A7M9-01A-23D-A34Z-10		49957907	105312653	140	20627											
PAK3	5063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110416299	110416299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PAK3	NM_001128168	exon9	c.A928G	p.I310V	GAAAAAATTGGTC	.	97	81	103	1	.	1043	G	110416299	A	G	110416299	3	3	161	1	0	0	0	0	1	0	0	0	11402	101	4	2	962	2	PAK3	23	110416299	Missense_Mutation	SNP	A	TCGA-G3-A7M9-01A-23D-A34Z-10	60458392	110416299	44854261	141	20628											
C8B	732	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	57406665	57406665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C8B	NM_000066	exon9	c.A1255G	p.M419V	CCACCATGGTGTC	.	62	26	41	1	.	92	C	57406665	T	C	57406665	3	2	162	1	0	0	0	0	1	0	0	0	2417	1464	51	2	536	2	C8B	1	57406665	Missense_Mutation	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10		57406665	191843956	1	20629											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94564351	94564351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ABCA4	NM_000350	exon6	c.T767C	p.V256A	CTTACCACACGGA	.	55	21	56	0	.	162	G	94564351	A	G	94564351	3	3	162	1	0	0	0	0	1	0	0	0	34	173	6	2	6234	2	ABCA4	1	94564351	Missense_Mutation	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10	37157686	94564351	154686270	2	20630											
LCE4A	199834	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152681721	152681721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LCE4A	NM_178356	exon1	c.G170A	p.G57D	GAGGTGGCTGCTG	.	118	32	82	1	.	90	A	152681721	G	A	152681721	3	1	162	1	0	0	0	0	1	0	0	0	8674	1203	42	3	172	3	LCE4A	1	152681721	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	58117370	152681721	96568900	3	20631											
SLC45A3	85414	broad.mit.edu;bcgsc.ca	37	1	205632672	205632672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC45A3	NM_033102	exon3	c.G247A	p.G83S	GGCGGCCATAGCG	.	56	4	52	0	.	98	T	205632672	C	T	205632672	3	4	162	1	0	0	0	0	1	0	0	0	14642	594	21	3	1426	3	SLC45A3	1	205632672	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	52950951	205632672	43617949	4	20632											
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	2	38301745	38301745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CYP1B1	NM_000104	exon2	c.C787T	p.Q263X	TGAGCTGCTCGAA	.	194	11	204	0	.	515	A	38301745	G	A	38301745	4	1	162	1	0	0	0	0	0	1	0	0	4151	1328	46	3	852	3	CYP1B1	2	38301745	Nonsense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10		38301745	204897628	5	20633											
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	160206490	160206490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	BAZ2B	NM_013450	exon28	c.C4592T	p.T1531I	GAACCAGTATTAA	.	134	11	135	0	.	94	A	160206490	G	A	160206490	3	1	162	1	0	0	0	0	1	0	0	0	1332	1029	36	3	1954	3	BAZ2B	2	160206490	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	121904745	160206490	82992883	6	20634											
C2orf47	79568	broad.mit.edu;mdanderson.org	37	2	200820961	200820961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C2orf47	NM_024520	exon2	c.G440T	p.G147V	CCGAGGGAGCGAA	.	18	4	32	0	.	90	T	200820961	G	T	200820961	3	4	162	1	0	0	0	0	1	0	0	0	2169	1174	41	3	442	3	C2orf47	2	200820961	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	40614471	200820961	42378412	7	20635											
EXOSC7	23016	broad.mit.edu;bcgsc.ca	37	3	45048999	45048999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EXOSC7	NM_015004	exon7	c.G703T	p.V235F	AAGGGAGTTGTGA	.	66	5	79	0	.	90	T	45048999	G	T	45048999	3	4	162	1	0	0	0	0	1	0	0	0	5319	1029	36	3	729	3	EXOSC7	3	45048999	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10		45048999	152973431	8	20636											
PRICKLE2	166336	broad.mit.edu;bcgsc.ca	37	3	64085071	64085071	+	Missense_Mutation	SNP	T	T	C	rs148689951	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRICKLE2	NM_198859	exon8	c.A2191G	p.S731G	GGAAGCTCCGCTG	.	76	30	66	1	T|0.999;C|0.001	95	C	64085071	T	C	64085071	3	2	162	1	0	0	0	0	1	0	0	0	12487	1551	54	2	347	2	PRICKLE2	3	64085071	Missense_Mutation	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10	19036072	64085071	133937359	9	20637											
CHST13	166012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	126260674	126260674	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHST13	NM_152889	exon3	c.G279A	p.P93P	ACAGCCGGAGGAC	.	49	15	50	0	.	90	A	126260674	G	A	126260674	2	1	162	1	0	0	0	0	0	0	0	1	3401	1103	39	1		1	CHST13	3	126260674	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	62175603	126260674	71761756	10	20638											
PLCH1	23007	broad.mit.edu;bcgsc.ca	37	3	155200721	155200721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PLCH1	NM_001130960	exon23	c.G3118A	p.G1040R	TGTCCCCTTGGCT	.	106	7	104	1	.	151	T	155200721	C	T	155200721	3	4	162	1	0	0	0	0	1	0	0	0	12037	681	24	3	1967	3	PLCH1	3	155200721	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	28940047	155200721	42821709	11	20639											
ARL14	80117	broad.mit.edu;mdanderson.org	37	3	160395171	160395171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARL14	NM_025047	exon1	c.C37T	p.Q13X	ACCAAACAAGCCC	.	215	12	223	1	.	90	T	160395171	C	T	160395171	4	4	162	1	0	0	0	0	0	1	0	0	930	479	17	3	39	3	ARL14	3	160395171	Nonsense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	5194450	160395171	37627259	12	20640											
ANXA10	11199	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169108554	169108554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANXA10	NM_007193	exon12	c.C944T	p.A315V	TGCTTGCCATCTG	.	384	43	434	1	.	90	T	169108554	C	T	169108554	3	4	162	1	0	0	0	0	1	0	0	0	715	739	26	3	990	3	ANXA10	4	169108554	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		169108554	22045722	13	20641											
IRX2	153572	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	2751518	2751518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IRX2	NM_001134222	exon1	c.C10A	p.P4T	CCTGCGGGTAGGA	.	23	10	32	0	.	226	T	2751518	G	T	2751518	3	4	162	1	0	0	0	0	1	0	0	0	7844	1232	43	3	1421	3	IRX2	5	2751518	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10		2751518	178163742	14	20642											
NIPBL	25836	broad.mit.edu;ucsc.edu	37	5	36976361	36976361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NIPBL	NM_015384	exon9	c.C1352T	p.S451F	AGACTTCTGTGGT	.	52	13	55	2	.	293	T	36976361	C	T	36976361	3	4	162	1	0	0	0	0	1	0	0	0	10428	913	32	3	1382	3	NIPBL	5	36976361	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	34224843	36976361	143938899	15	20643											
PPP1R10	5514	broad.mit.edu;bcgsc.ca	37	6	30574619	30574619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PPP1R10	NM_002714	exon7	c.G397A	p.A133T	CTGAGGCCAATTT	.	170	11	196	1	.	660	T	30574619	C	T	30574619	3	4	162	1	0	0	0	0	1	0	0	0	12352	739	26	3	2481	3	PPP1R10	6	30574619	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		30574619	140540448	16	20644											
PRSS35	167681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84233979	84233979	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRSS35	NM_153362	exon2	c.G819A	p.L273L	TACCTTGGACTAT	.	56	17	66	1	.	91	A	84233979	G	A	84233979	2	1	162	1	0	0	0	0	0	0	0	1	12624	1339	47	3		3	PRSS35	6	84233979	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	53659360	84233979	86881088	17	20645											
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22347988	22347988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RAPGEF5	NM_012294	exon5	c.T191A	p.L64H	GGAATGAGAGGCA	.	64	19	61	0	.	206	T	22347988	A	T	22347988	3	4	162	1	0	0	0	0	1	0	0	0	13047	304	11	4	2089	4	RAPGEF5	7	22347988	Missense_Mutation	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10		22347988	136790675	18	20646											
ARHGEF10	9639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	1871942	1871942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARHGEF10	NM_014629	exon21	c.C2390T	p.S797F	GCAGATCTGGGCG	.	110	10	137	0	.	272	T	1871942	C	T	1871942	3	4	162	1	0	0	0	0	1	0	0	0	894	913	32	3	2468	3	ARHGEF10	8	1871942	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		1871942	144492080	19	20647											
RP1L1	94137	ucsc.edu;bcgsc.ca	37	8	10467415	10467415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RP1L1	NM_178857	exon4	c.G4193T	p.G1398V	GGAAGTCCTTCCT	.	41	4	49	0	.	139	A	10467415	C	A	10467415	3	1	162	1	0	0	0	0	1	0	0	0	13533	855	30	3	3013	3	RP1L1	8	10467415	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	8595473	10467415	135896607	20	20648											
CHMP7	91782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23104433	23104433	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHMP7	NM_152272	exon2	c.G225A	p.R75R	TCTGCGGGACTTG	.	28	12	58	1	.	90	A	23104433	G	A	23104433	2	1	162	1	0	0	0	0	0	0	0	1	3361	1219	43	3		3	CHMP7	8	23104433	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	12637018	23104433	123259589	21	20649											
PRKDC	5591	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48732069	48732069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRKDC	.	.	.	.	AGAATAATTCTTA	.	163	27	165	1	.	1515	G	48732069	A	G	48732069	3	3	162	1	0	0	0	0	1	0	0	0	12521	98	4	2	3127	2	PRKDC	8	48732069	Missense_Mutation	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10	25627636	48732069	97631953	22	20650											
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18159634	18159634	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MRGPRX3	NM_054031	exon3	c.G885T	p.L295L	GGCTCTGCAGGAC	.	53	19	51	0	.	92	T	18159634	G	T	18159634	2	4	162	1	0	0	0	0	0	0	0	1	9768	1306	46	3		3	MRGPRX3	11	18159634	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10		18159634	116846882	23	20651											
OR5T2	219464	ucsc.edu;bcgsc.ca	37	11	56000549	56000549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR5T2	NM_001004746	exon1	c.T113C	p.L38P	AAATCTAGAACAA	.	86	37	103	2	.	70	G	56000549	A	G	56000549	3	3	162	1	0	0	0	0	1	0	0	0	11182	420	15	2	965	2	OR5T2	11	56000549	Missense_Mutation	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10	37840915	56000549	79005967	24	20652											
EEF1G	1937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62334990	62334990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001404	exon6	c.C533G	p.P178R	AAAGAAGGCTCTA	.	53	10	74	1	.	.	C	62334990	G	C	62334990	3	2	162	1	0	0	0	0	1	0	0	0	4928	1000	35	4	800	4	EEF1G	11	62334990	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	6334441	62334990	72671526	25	20653											
OMP	4975	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76814313	76814313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_006189	exon1	c.T428C	p.V143A	TCCTCGTCACCTT	.	43	12	48	1	.	.	C	76814313	T	C	76814313	3	2	162	1	0	0	0	0	1	0	0	0	10867	1667	58	2	430	2	OMP	11	76814313	Missense_Mutation	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10	14479323	76814313	58192203	26	20654											
HYOU1	10525	broad.mit.edu;bcgsc.ca	37	11	118925964	118925964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HYOU1	NM_006389	exon5	c.G352A	p.A118T	AGCGGGCCTGGTA	.	78	5	111	0	.	90	T	118925964	C	T	118925964	3	4	162	1	0	0	0	0	1	0	0	0	7470	739	26	3	2735	3	HYOU1	11	118925964	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	42111651	118925964	16080552	27	20655											
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676932	123676932	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR6M1	NM_001005325	exon1	c.C126A	p.T42T	GATGATGGTGATG	.	100	15	129	0	.	70	T	123676932	G	T	123676932	2	4	162	1	0	0	0	0	0	0	0	1	11205	1335	47	3		3	OR6M1	11	123676932	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	4750968	123676932	11329584	28	20656											
HEPACAM	220296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124794662	124794662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HEPACAM	NM_152722	exon2	c.C389G	p.T130S	GTGAAGGTGTCGT	.	34	13	64	0	.	91	C	124794662	G	C	124794662	3	2	162	1	0	0	0	0	1	0	0	0	7052	1261	44	4	885	4	HEPACAM	11	124794662	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	1117730	124794662	10211854	29	20657											
CLSTN3	9746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7287981	7287981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CLSTN3	NM_014718	exon4	c.C442G	p.R148G	GTGGAACGGCTGT	.	103	39	98	2	.	153	G	7287981	C	G	7287981	3	3	162	1	0	0	0	0	1	0	0	0	3563	527	19	4	456	4	CLSTN3	12	7287981	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		7287981	126563914	30	20658											
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50186524	50186524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NCKAP5L	NM_001037806	exon11	c.C3586T	p.P1196S	AGGCTGGCATGCT	.	96	29	57	0	.	68	A	50186524	G	A	50186524	3	1	162	1	0	0	0	0	1	0	0	0	10224	1203	42	3	430	3	NCKAP5L	12	50186524	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	42898543	50186524	83665371	31	20659											
OS9	10956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58087958	58087958	+	Missense_Mutation	SNP	C	C	T	rs150848860	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OS9	NM_001261423	exon1	c.C14T	p.T5M	CGGAAACGCTGCT	.	124	32	80	0	C|0.997;G|0.003	493	T	58087958	C	T	58087958	3	4	162	1	0	0	0	0	1	0	0	0	11272	536	19	1	16	1	OS9	12	58087958	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	7901434	58087958	75763937	32	20660											
GLT1D1	144423	broad.mit.edu;bcgsc.ca	37	12	129360597	129360597	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GLT1D1	NM_144669	exon2	c.G207A	p.R69R	AGGCAGGCTTTTG	.	53	5	46	0	.	90	A	129360597	G	A	129360597	2	1	162	1	0	0	0	0	0	0	0	1	6465	1194	42	3		3	GLT1D1	12	129360597	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	71272639	129360597	4491298	33	20661											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45658377	45658377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	FANCM	NM_020937	exon20	c.G5152A	p.V1718M	TCCAAGGTGCGTT	.	176	77	174	0	.	569	A	45658377	G	A	45658377	3	1	162	1	0	0	0	0	1	0	0	0	5671	1261	44	3	5230	3	FANCM	14	45658377	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10		45658377	61691163	34	20662											
TMEM30B	161291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	61747549	61747549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TMEM30B	NM_001017970	exon1	c.G317A	p.G106D	ACTGGGCCCTGGA	.	25	9	14	0	.	90	T	61747549	C	T	61747549	3	4	162	1	0	0	0	0	1	0	0	0	16151	739	26	3	742	3	TMEM30B	14	61747549	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	16089172	61747549	45601991	35	20663											
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75359658	75359658	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DLST	NM_001933	exon8	c.C564T	p.P188P	GGTGCCCTCGCCC	.	78	8	62	0	.	227	T	75359658	C	T	75359658	2	4	162	1	0	0	0	0	0	0	0	1	4569	668	24	3		3	DLST	14	75359658	Silent	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	13612109	75359658	31989882	36	20664											
PDCD7	10081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65411134	65411134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PDCD7	NM_005707	exon5	c.G1379A	p.G460D	AAGTTGCCTTTGG	.	80	37	73	1	.	227	T	65411134	C	T	65411134	3	4	162	1	0	0	0	0	1	0	0	0	11625	739	26	3	82	3	PDCD7	15	65411134	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		65411134	37120258	37	20665											
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81593848	81593848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IL16	NM_001172128	exon15	c.T3313G	p.L1105V	GCAACATTAAAGG	.	63	19	56	0	.	653	G	81593848	T	G	81593848	3	3	162	1	0	0	0	0	1	0	0	0	7633	1490	52	5	3367	5	IL16	15	81593848	Missense_Mutation	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10	16182714	81593848	20937544	38	20666											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	31414896	31414896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ITGAD	NM_005353	exon7	c.C634T	p.Q212X	AGCCAGCAGAGCC	.	76	27	62	0	.	226	T	31414896	C	T	31414896	4	4	162	1	0	0	0	0	0	1	0	0	7884	711	25	3	660	3	ITGAD	16	31414896	Nonsense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		31414896	58939857	39	20667											
NUP93	9688	broad.mit.edu;mdanderson.org	37	16	56870513	56870513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NUP93	NM_014669	exon17	c.C1783T	p.P595S	TGTCAGCCTGGAG	.	33	4	47	0	.	205	T	56870513	C	T	56870513	3	4	162	1	0	0	0	0	1	0	0	0	10772	753	26	3	1845	3	NUP93	16	56870513	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	25455617	56870513	33484240	40	20668											
GPR56	9289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57685514	57685514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GPR56	NM_001145773	exon3	c.G482C	p.S161T	CCGCCAGCTTCAC	.	55	20	55	1	.	90	C	57685514	G	C	57685514	3	2	162	1	0	0	0	0	1	0	0	0	6700	971	34	4	488	4	GPR56	16	57685514	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	815001	57685514	32669239	41	20669											
NOB1	28987	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69776359	69776359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NOB1	NM_014062	exon9	c.C1115T	p.P372L	ACAAAGGGTGACA	.	80	6	117	1	.	90	A	69776359	G	A	69776359	3	1	162	1	0	0	0	0	1	0	0	0	10511	1232	43	3	127	3	NOB1	16	69776359	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	12090845	69776359	20578394	42	20670											
DDX19B	11269	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70363839	70363839	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DDX19B	NM_007242	exon9	c.G891A	p.L297L	CAAACTGAAGCGT	.	115	30	148	1	.	226	A	70363839	G	A	70363839	2	1	162	1	0	0	0	0	0	0	0	1	4347	1277	45	3		3	DDX19B	16	70363839	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	587480	70363839	19990914	43	20671											
ANKRD13B	124930	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	27940598	27940598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANKRD13B	NM_152345	exon15	c.T1879C	p.X627Q	GAGCAGTAGCGCC	.	20	8	24	0	.	90	C	27940598	T	C	27940598	3	2	162	1	0	0	0	0	1	0	0	0	642	1651	57	2	1937	2	ANKRD13B	17	27940598	Missense_Mutation	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10		27940598	53254612	44	20672											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66268836	66268836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC16A6	NM_001174166	exon5	c.T449C	p.I150T	GTGACTATGGAAC	.	135	32	107	0	.	90	G	66268836	A	G	66268836	3	3	162	1	0	0	0	0	1	0	0	0	14412	449	16	2	1134	2	SLC16A6	17	66268836	Missense_Mutation	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10	38328238	66268836	14926374	45	20673											
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6985309	6985309	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LAMA1	NM_005559	exon39	c.A5587T	p.N1863Y	CTGCGTTCCTTTG	.	71	23	77	1	.	149	A	6985309	T	A	6985309	3	1	162	1	0	0	0	0	1	0	0	0	8605	1783	62	4	3740	4	LAMA1	18	6985309	Missense_Mutation	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10		6985309	71091939	46	20674											
PNMAL1	55228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46973078	46973078	+	Silent	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PNMAL1	NM_018215	exon2	c.T1215A	p.P405P	GCCCCGAGGGGCC	.	53	20	53	1	.	68	T	46973078	A	T	46973078	2	4	162	1	0	0	0	0	0	0	0	1	12157	291	11	4		4	PNMAL1	19	46973078	Silent	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10		46973078	12155905	47	20675											
STRN4	29888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47231256	47231256	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	STRN4	NM_001039877	exon8	c.C1048G	p.R350G	TGACCCGACGGCT	.	51	13	50	0	.	90	C	47231256	G	C	47231256	3	2	162	1	0	0	0	0	1	0	0	0	15330	1057	37	4	1274	4	STRN4	19	47231256	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	258178	47231256	11897727	48	20676											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55148029	55148029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LILRB1	NM_001081637	exon14	c.C1738T	p.P580S	TCTCCTCCTTCCC	.	122	10	134	0	.	137	T	55148029	C	T	55148029	3	4	162	1	0	0	0	0	1	0	0	0	8790	855	30	3	1788	3	LILRB1	19	55148029	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	7916773	55148029	3980954	49	20677											
ADRA1D	146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	4228867	4228867	+	Nonsense_Mutation	SNP	G	G	T	rs140080149	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ADRA1D	NM_000678	exon1	c.C738A	p.C246X	GATACCGCAGAAG	.	86	35	97	0	G|0.996;A|0.004	522	T	4228867	G	T	4228867	4	4	162	1	0	0	0	0	0	1	0	0	336	1079	38	1	988	1	ADRA1D	20	4228867	Nonsense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10		4228867	58796653	50	20678											
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48497559	48497559	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC9A8	NM_001260491	exon13	c.C1305T	p.I435I	GTTCATCATGTGG	.	113	34	115	0	.	91	T	48497559	C	T	48497559	2	4	162	1	0	0	0	0	0	0	0	1	14720	816	29	3		3	SLC9A8	20	48497559	Silent	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	44268692	48497559	14527961	51	20679											
PHACTR3	116154	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	58349512	58349512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PHACTR3	NM_080672	exon7	c.G1141A	p.D381N	TATCAGGACGAGG	.	54	7	76	1	.	93	A	58349512	G	A	58349512	3	1	162	1	0	0	0	0	1	0	0	0	11811	1174	41	3	1167	3	PHACTR3	20	58349512	Missense_Mutation	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	9851953	58349512	4676008	52	20680											
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62594086	62594086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF512B	NM_020713	exon13	c.G2017A	p.G673S	CCACACCCAGCGG	.	69	21	77	0	.	90	T	62594086	C	T	62594086	3	4	162	1	0	0	0	0	1	0	0	0	17954	623	22	3	681	3	ZNF512B	20	62594086	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10	4244574	62594086	431434	53	20681											
EIF4ENIF1	56478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31845450	31845450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EIF4ENIF1	NM_019843	exon12	c.T1652G	p.L551W	GGCTCCAAGCTCC	.	72	24	77	0	.	91	C	31845450	A	C	31845450	3	2	162	1	0	0	0	0	1	0	0	0	5035	131	5	5	1340	5	EIF4ENIF1	22	31845450	Missense_Mutation	SNP	A	TCGA-GJ-A6C0-01A-12D-A30V-10		31845450	19459116	54	20682											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41574846	41574846	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EP300	NM_001429	exon31	c.T7131C	p.A2377A	GCTTGCTAGCAAT	.	63	22	87	0	.	2011	C	41574846	T	C	41574846	2	2	162	1	0	0	0	0	0	0	0	1	5148	1509	53	2		2	EP300	22	41574846	Silent	SNP	T	TCGA-GJ-A6C0-01A-12D-A30V-10	9729396	41574846	9729720	55	20683											
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46782348	46782348	+	Silent	SNP	G	G	A	rs147425309		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CELSR1	NM_014246	exon19	c.C6690T	p.N2230N	CCGCACGTTGCGT	.	97	57	82	1	G|1.000;A|0.000	525	A	46782348	G	A	46782348	2	1	162	1	0	0	0	0	0	0	0	1	3221	1136	40	1		1	CELSR1	22	46782348	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	5207502	46782348	4522218	56	20684											
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50378093	50378093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SHROOM4	NM_020717	exon4	c.G980A	p.C327Y	CTGAGGCAACAGA	.	101	32	76	0	.	131	T	50378093	C	T	50378093	3	4	162	1	0	0	0	0	1	0	0	0	14296	710	25	3	3525	3	SHROOM4	23	50378093	Missense_Mutation	SNP	C	TCGA-GJ-A6C0-01A-12D-A30V-10		50378093	104892467	57	20685											
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75648383	75648383	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MAGEE1	NM_020932	exon1	c.G60A	p.A20A	TACTGCGCACAAC	.	138	15	152	0	.	262	A	75648383	G	A	75648383	2	1	162	1	0	0	0	0	0	0	0	1	9185	1074	38	1		1	MAGEE1	23	75648383	Silent	SNP	G	TCGA-GJ-A6C0-01A-12D-A30V-10	25270290	75648383	79622177	58	20686											
IFI16	3428	hgsc.bcm.edu;bcgsc.ca	37	1	159002321	159002321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	IFI16	NM_005531	exon7	c.A1169G	p.K390R	TAAAGAAAAAAAC	.	41	4	36	0	.	91	G	159002321	A	G	159002321	3	3	163	1	0	0	0	0	1	0	0	0	7511	14	1	2	1191	2	IFI16	1	159002321	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		159002321	90248300	1	20687											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208269429	208269429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PLXNA2	NM_025179	exon8	c.G1927T	p.G643W	TCTTCCCTGTCTC	.	179	17	109	0	.	92	A	208269429	C	A	208269429	3	1	163	1	0	0	0	0	1	0	0	0	12120	681	24	3	3857	3	PLXNA2	1	208269429	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	49267108	208269429	40981192	2	20688											
LPGAT1	9926	hgsc.bcm.edu;broad.mit.edu	37	1	211952355	211952355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LPGAT1	NM_014873	exon6	c.A759G	p.I253M	TGTATCTATTATC	.	80	4	60	0	.	92	C	211952355	T	C	211952355	3	2	163	1	0	0	0	0	1	0	0	0	8914	1512	53	2	365	2	LPGAT1	1	211952355	Missense_Mutation	SNP	T	TCGA-HP-A5MZ-01A-21D-A27I-10	3682926	211952355	37298266	3	20689											
RAB4A	5867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	229434759	229434759	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	RAB4A	NM_004578	exon6	c.G481T	p.E161X	ACAGGGGAGAATG	.	155	23	85	0	.	182	T	229434759	G	T	229434759	4	4	163	1	0	0	0	0	0	1	0	0	12946	1175	41	3	503	3	RAB4A	1	229434759	Nonsense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	17482404	229434759	19815862	4	20690											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21259995	21259995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	APOB	NM_000384	exon6	c.C670T	p.P224S	CAAGTGGGCTGAT	.	219	24	204	0	.	175	A	21259995	G	A	21259995	3	1	163	1	0	0	0	0	1	0	0	0	785	1232	43	3	13117	3	APOB	2	21259995	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		21259995	221939378	5	20691											
CIB4	130106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26852279	26852279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CIB4	NM_001029881	exon3	c.G185A	p.R62Q	CTCACCCGCAGAG	.	96	19	77	0	.	131	T	26852279	C	T	26852279	3	4	163	1	0	0	0	0	1	0	0	0	3423	666	23	1	392	1	CIB4	2	26852279	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	5592284	26852279	216347094	6	20692											
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	67631603	67631603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ETAA1	NM_019002	exon5	c.G1789C	p.D597H	CAATTAGATAATA	.	81	11	73	0	.	156	C	67631603	G	C	67631603	3	2	163	1	0	0	0	0	1	0	0	0	5267	942	33	4	1807	4	ETAA1	2	67631603	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	40779324	67631603	175567770	7	20693											
PMS1	5378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190742031	190742031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PMS1	NM_000534	exon13	c.A2668G	p.M890V	TTACCCATGTACT	.	152	16	111	1	.	1396	G	190742031	A	G	190742031	3	3	163	1	0	0	0	0	1	0	0	0	12142	217	8	2	2714	2	PMS1	2	190742031	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10	123110428	190742031	52457342	8	20694											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49321560	49321560	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	USP4	NM_003363	exon19	c.C2400T	p.P800P	ACAGTTGGGACAG	.	253	37	202	0	.	660	A	49321560	G	A	49321560	2	1	163	1	0	0	0	0	0	0	0	1	17068	1335	47	3		3	USP4	3	49321560	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		49321560	148700870	9	20695											
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49849633	49849633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	UBA7	NM_003335	exon7	c.G701T	p.G234V	AGGGACCCATCCT	.	196	32	165	0	.	228	A	49849633	C	A	49849633	3	1	163	1	0	0	0	0	1	0	0	0	16830	623	22	3	2409	3	UBA7	3	49849633	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	528073	49849633	148172797	10	20696											
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57391435	57391435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DNAH12	NM_178504	exon41	c.A6464G	p.H2155R	TTAAAATGGTCCT	.	121	26	90	0	.	47	C	57391435	T	C	57391435	3	2	163	1	0	0	0	0	1	0	0	0	4600	1464	51	2	2890	2	DNAH12	3	57391435	Missense_Mutation	SNP	T	TCGA-HP-A5MZ-01A-21D-A27I-10	7541802	57391435	140630995	11	20697											
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120067725	120067725	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001099678	exon1	c.C366A	p.L122L	CACCTGGAGGCTG	.	73	14	31	0	.	.	T	120067725	G	T	120067725	2	4	163	1	0	0	0	0	0	0	0	1	9014	1161	41	3		3	LRRC58	3	120067725	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	62676290	120067725	77954705	12	20698											
SLC10A7	84068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147179851	147179851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC10A7	NM_001029998	exon11	c.G986A	p.R329K	TTCTGCCTTGATA	.	97	12	64	0	.	22	T	147179851	C	T	147179851	3	4	163	1	0	0	0	0	1	0	0	0	14379	681	24	3	44	3	SLC10A7	4	147179851	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10		147179851	43974425	13	20699											
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131721132	131721132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC22A5	NM_003060	exon4	c.C765G	p.D255E	CCGAGACTGGCGG	.	274	78	151	0	.	90	G	131721132	C	G	131721132	3	3	163	1	0	0	0	0	1	0	0	0	14457	564	20	4	779	4	SLC22A5	5	131721132	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10		131721132	49194128	14	20700											
PCDHB4	56131	hgsc.bcm.edu;mdanderson.org	37	5	140503231	140503231	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PCDHB4	NM_018938	exon1	c.C1651T	p.L551L	CTGGTGCTGGACA	.	19	4	8	0	.	93	T	140503231	C	T	140503231	2	4	163	1	0	0	0	0	0	0	0	1	11544	796	28	3		3	PCDHB4	5	140503231	Silent	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	8782099	140503231	40412029	15	20701											
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30698721	30698721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FLOT1	NM_005803	exon9	c.C880G	p.L294V	GCTCCAGCTTGTA	.	53	6	31	0	.	90	C	30698721	G	C	30698721	3	2	163	1	0	0	0	0	1	0	0	0	5936	962	34	4	423	4	FLOT1	6	30698721	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		30698721	140416346	16	20702											
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31851702	31851702	+	Missense_Mutation	SNP	C	C	T	rs146726232		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EHMT2	NM_006709	exon22	c.G2797A	p.V933M	TGGGCACGTTCTC	.	134	17	80	0	C|1.000;T|0.000	91	T	31851702	C	T	31851702	3	4	163	1	0	0	0	0	1	0	0	0	4984	536	19	1	863	1	EHMT2	6	31851702	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	1152981	31851702	139263365	17	20703											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43166474	43166474	+	Silent	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CUL9	NM_015089	exon12	c.C2931A	p.P977P	CAGCCCCGGAGGT	.	72	12	42	0	.	529	A	43166474	C	A	43166474	2	1	163	1	0	0	0	0	0	0	0	1	4061	639	23	1		1	CUL9	6	43166474	Silent	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	11314772	43166474	127948593	18	20704											
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	76731919	76731919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	IMPG1	NM_001563	exon6	c.C580A	p.L194I	GCCCAAGTGAGAC	.	65	12	63	0	.	93	T	76731919	G	T	76731919	3	4	163	1	0	0	0	0	1	0	0	0	7728	1029	36	3	1861	3	IMPG1	6	76731919	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	33565445	76731919	94383148	19	20705											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563360	121563360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	C6orf170	NM_152730	exon18	c.C2144T	p.A715V	TTTTTTGCATATC	.	50	7	43	0	.	92	A	121563360	G	A	121563360	3	1	163	1	0	0	0	0	1	0	0	0	2344	1319	46	3	1689	3	C6orf170	6	121563360	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	44831441	121563360	49551707	20	20706											
LPA	4018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160966524	160966524	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LPA	NM_005577	exon34	c.C5346T	p.C1782C	TGTGTAGCACCAG	.	133	6	107	0	.	74	A	160966524	G	A	160966524	2	1	163	1	0	0	0	0	0	0	0	1	8903	963	34	3		3	LPA	6	160966524	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	39403164	160966524	10148543	21	20707											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4277393	4277393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SDK1	NM_152744	exon42	c.A6107G	p.K2036R	AGAATAAGAAGTA	.	287	51	205	0	.	138	G	4277393	A	G	4277393	3	3	163	1	0	0	0	0	1	0	0	0	13968	72	3	2	6273	2	SDK1	7	4277393	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		4277393	154861270	22	20708											
VWC2	375567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	49951654	49951654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	VWC2	NM_198570	exon4	c.C851T	p.A284V	AAACCGCGGTGAT	.	143	22	141	0	.	514	T	49951654	C	T	49951654	3	4	163	1	0	0	0	0	1	0	0	0	17240	768	27	1	861	1	VWC2	7	49951654	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	45674261	49951654	109187009	23	20709											
SRRT	51593	broad.mit.edu;bcgsc.ca	37	7	100473251	100473274	+	In_Frame_Del	DEL	GACAAGTTCAGAAGAGAGCGCAGC	GACAAGTTCAGAAGAGAGCGCAGC	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GACAAGTTCAGAAGAGAGCGCAGC	GACAAGTTCAGAAGAGAGCGCAGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SRRT	NM_001128853	exon2	c.40_63del	p.14_21del	CGCAGGGACAAGT	.	161	9	121	0	.	92	-	100473274	GACAAGTTCAGAAGAGAGCGCAGC	-	100473251	7	5	163	1	0	1	0	1	0	0	0	0	15171	1174	41	0	42	0	SRRT	7	100473251	In_Frame_Del	DEL	GACAAGTTCAGAAGAGAGCGCAGC	TCGA-HP-A5MZ-01A-21D-A27I-10	50521597	100473251	58665412	24	20710											
DPP6	1804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154002597	154002597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DPP6	NM_001936	exon1	c.G18T	p.E6D	CAAGGAGCCAAGC	.	92	18	60	1	.	652	T	154002597	G	T	154002597	3	4	163	1	0	0	0	0	1	0	0	0	4730	962	34	3	322	3	DPP6	7	154002597	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	53529346	154002597	5136066	25	20711											
ZFPM2	23414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814199	106814199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZFPM2	NM_012082	exon8	c.C1889T	p.T630I	CTTCCACTGTCTT	.	209	28	106	1	.	139	T	106814199	C	T	106814199	3	4	163	1	0	0	0	0	1	0	0	0	17655	565	20	3	1919	3	ZFPM2	8	106814199	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10		106814199	39549823	26	20712											
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13126733	13126733	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MPDZ	NM_003829	exon33	c.T4503C	p.D1501D	GAGTGTATCTTCT	.	152	26	91	0	.	231	G	13126733	A	G	13126733	2	3	163	1	0	0	0	0	0	0	0	1	9722	446	16	2		2	MPDZ	9	13126733	Silent	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		13126733	128086698	27	20713											
GABBR2	9568	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101340352	101340352	+	Silent	SNP	G	G	A	rs145095054	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GABBR2	NM_005458	exon2	c.C324T	p.C108C	GTTGTCGCACTGG	.	104	19	105	1	G|1.000;A|0.000	518	A	101340352	G	A	101340352	2	1	163	1	0	0	0	0	0	0	0	1	6156	1079	38	1		1	GABBR2	9	101340352	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	88213619	101340352	39873079	28	20714											
ALDOB	229	broad.mit.edu;bcgsc.ca	37	9	104193055	104193056	+	Splice_Site	DEL	CA	CA	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ALDOB	.	.	.	.	TACACTCACCTAC	.	59	12	49	0	.	226	-	104193056	CA	-	104193055	8	5	163	1	0	1	0	1	0	0	1	0	508	841	29	0		0	ALDOB	9	104193055	Splice_Site	DEL	CA	TCGA-HP-A5MZ-01A-21D-A27I-10	2852703	104193055	37020376	29	20715											
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	117486766	117486766	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ATRNL1	NM_207303	exon27	c.T3804C	p.L1268L	ACTGCTTCGAGAA	.	37	10	20	0	.	96	C	117486766	T	C	117486766	2	2	163	1	0	0	0	0	0	0	0	1	1207	1770	62	2		2	ATRNL1	10	117486766	Silent	SNP	T	TCGA-HP-A5MZ-01A-21D-A27I-10		117486766	18047981	30	20716											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124335946	124335946	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DMBT1	NM_007329	exon7	c.G315A	p.V105V	GCTGGTGAATGGA	.	120	22	70	0	.	494	A	124335946	G	A	124335946	2	1	163	1	0	0	0	0	0	0	0	1	4577	1277	45	3		3	DMBT1	10	124335946	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	6849180	124335946	11198801	31	20717											
DOCK1	1793	broad.mit.edu;bcgsc.ca	37	10	129183066	129183066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DOCK1	NM_001380	exon38	c.G3757A	p.V1253M	GAGGATGTGTGTG	.	201	12	170	1	.	698	A	129183066	G	A	129183066	3	1	163	1	0	0	0	0	1	0	0	0	4684	1377	48	3	3907	3	DOCK1	10	129183066	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	4847120	129183066	6351681	32	20718											
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134015481	134015481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DPYSL4	NM_006426	exon11	c.T1142G	p.V381G	AGTTCGTCGCGGT	.	120	11	87	0	.	514	G	134015481	T	G	134015481	3	3	163	1	0	0	0	0	1	0	0	0	4749	1667	58	5	1184	5	DPYSL4	10	134015481	Missense_Mutation	SNP	T	TCGA-HP-A5MZ-01A-21D-A27I-10	4832415	134015481	1519266	33	20719											
NUP98	4928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3735109	3735109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUP98	NM_005387	exon19	c.C2567T	p.S856L	TTCCTTGAAACTG	.	147	20	117	1	.	703	A	3735109	G	A	3735109	3	1	163	1	0	0	0	0	1	0	0	0	10773	1294	45	3	2967	3	NUP98	11	3735109	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		3735109	131271407	34	20720											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62286109	62286109	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	AHNAK	NM_001620	exon5	c.15780delC	p.P5260fs	AAGAGAGGGTAGC	.	87	12	101	0	.	109	-	62286109	G	-	62286109	7	5	163	1	0	1	0	1	0	0	0	0	414	987	35	0	2012	0	AHNAK	11	62286109	Frame_Shift_Del	DEL	G	TCGA-HP-A5MZ-01A-21D-A27I-10	58551000	62286109	72720407	35	20721											
GDPD5	81544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75150967	75150967	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GDPD5	NM_030792	exon15	c.C1513T	p.L505L	AGACCAGGTCGGC	.	163	27	107	0	.	91	A	75150967	G	A	75150967	2	1	163	1	0	0	0	0	0	0	0	1	6327	991	35	3		3	GDPD5	11	75150967	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	12864858	75150967	59855549	36	20722											
THRSP	7069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77774945	77774946	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	p.R7G	AACCAAGCGTTAC	.	111	15	89	0	.	.	AG	77774946	GC	AG	77774945	3	1	163	1	0	0	0	0	1	0	0	0	15873	962	34	3	20	3	THRSP	11	77774945	Missense_Mutation	DNP	GC	TCGA-HP-A5MZ-01A-21D-A27I-10	2623978	77774945	57231571	37	20723											
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125885319	125885319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CDON	NM_016952	exon7	c.C1015T	p.P339S	GGGCTGGGTTCCC	.	272	48	164	0	.	158	A	125885319	G	A	125885319	3	1	163	1	0	0	0	0	1	0	0	0	3170	1232	43	3	2835	3	CDON	11	125885319	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	48110374	125885319	9121197	38	20724											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26816709	26816709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ITPR2	NM_002223	exon15	c.T1622G	p.L541R	TCCCCCAGATCTT	.	94	13	58	0	.	542	C	26816709	A	C	26816709	3	2	163	1	0	0	0	0	1	0	0	0	7921	188	7	5	6655	5	ITPR2	12	26816709	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		26816709	107035186	39	20725											
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57037684	57037684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ATP5B	NM_001686	exon4	c.A544G	p.I182V	CCAGAATTTCCTG	.	179	33	131	0	.	91	C	57037684	T	C	57037684	3	2	163	1	0	0	0	0	1	0	0	0	1148	1493	52	2	1073	2	ATP5B	12	57037684	Missense_Mutation	SNP	T	TCGA-HP-A5MZ-01A-21D-A27I-10	30220975	57037684	76814211	40	20726											
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72416191	72416191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	TPH2	NM_173353	exon9	c.A1081T	p.T361S	TTCTTCACAATCG	.	58	8	67	0	.	93	T	72416191	A	T	72416191	3	4	163	1	0	0	0	0	1	0	0	0	16399	159	6	4	1115	4	TPH2	12	72416191	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10	15378507	72416191	61435704	41	20727											
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24861041	24861041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SPATA13	NM_001166271	exon7	c.A2620G	p.M874V	GAGATCATGGACA	.	140	27	112	0	.	229	G	24861041	A	G	24861041	3	3	163	1	0	0	0	0	1	0	0	0	14999	217	8	2	2642	2	SPATA13	13	24861041	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		24861041	90308837	42	20728											
NUBPL	80224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32257020	32257020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUBPL	NM_025152	exon7	c.A548G	p.D183G	TTGTAGACATGCC	.	75	13	50	0	.	226	G	32257020	A	G	32257020	3	3	163	1	0	0	0	0	1	0	0	0	10717	275	10	2	574	2	NUBPL	14	32257020	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		32257020	75092520	43	20729											
EXOC5	10640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	57698355	57698355	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EXOC5	NM_006544	exon11	c.A1017G	p.K339K	AATGGATTTGATA	.	93	8	72	0	.	137	C	57698355	T	C	57698355	2	2	163	1	0	0	0	0	0	0	0	1	5307	1490	52	2		2	EXOC5	14	57698355	Silent	SNP	T	TCGA-HP-A5MZ-01A-21D-A27I-10	25441335	57698355	49651185	44	20730											
GJD2	57369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35044889	35044889	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GJD2	NM_020660	exon2	c.C756T	p.V252V	TAGAAAGACAGTC	.	276	37	213	0	.	90	A	35044889	G	A	35044889	2	1	163	1	0	0	0	0	0	0	0	1	6417	929	33	3		3	GJD2	15	35044889	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		35044889	67486503	45	20731											
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49054803	49054803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CEP152	NM_014985	exon18	c.G2347A	p.A783T	TCATTGCCTTTAT	.	78	9	58	0	.	70	T	49054803	C	T	49054803	3	4	163	1	0	0	0	0	1	0	0	0	3248	739	26	3	2653	3	CEP152	15	49054803	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	14009914	49054803	53476589	46	20732											
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39502874	39502874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KRT33A	NM_004138	exon6	c.G923A	p.S308N	TGGGAGCTGTAGC	.	87	23	61	0	.	90	T	39502874	C	T	39502874	3	4	163	1	0	0	0	0	1	0	0	0	8469	797	28	3	299	3	KRT33A	17	39502874	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10		39502874	41692336	47	20733											
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39643887	39643887	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KRT36	NM_003771	exon4	c.C802T	p.Q268X	CGTACTGGCATCT	.	209	27	137	0	.	90	A	39643887	G	A	39643887	4	1	163	1	0	0	0	0	0	1	0	0	8473	1357	47	3	617	3	KRT36	17	39643887	Nonsense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	141013	39643887	41551323	48	20734											
FECH	2235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55226447	55226447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FECH	NM_001012515	exon7	c.T752A	p.L251Q	TGGTCCAGTTCCT	.	62	11	49	0	.	90	T	55226447	A	T	55226447	3	4	163	1	0	0	0	0	1	0	0	0	5808	188	7	4	557	4	FECH	18	55226447	Missense_Mutation	SNP	A	TCGA-HP-A5MZ-01A-21D-A27I-10		55226447	22850801	49	20735											
CIRBP	1153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1271998	1271998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CIRBP	NM_001280	exon6	c.450delC	p.G150fs	TGGTGGCTACAGT	.	456	86	391	0	.	226	-	1271998	C	-	1271998	7	5	163	1	0	1	0	1	0	0	0	0	3433	784	28	0	468	0	CIRBP	19	1271998	Frame_Shift_Del	DEL	C	TCGA-HP-A5MZ-01A-21D-A27I-10		1271998	57856985	50	20736											
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7964686	7964686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LRRC8E	NM_001268284	exon4	c.C1279T	p.P427S	ATGCTGCCGGGTC	.	55	9	27	0	.	92	T	7964686	C	T	7964686	3	4	163	1	0	0	0	0	1	0	0	0	9025	739	26	3	1285	3	LRRC8E	19	7964686	Missense_Mutation	SNP	C	TCGA-HP-A5MZ-01A-21D-A27I-10	6692688	7964686	51164297	51	20737											
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18001723	18001723	+	Silent	SNP	G	G	A	rs149937279	alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC5A5	NM_000453	exon14	c.G1680A	p.P560P	GGCCCCGGGATTG	.	78	20	64	0	G|1.000;C|0.000	93	A	18001723	G	A	18001723	2	1	163	1	0	0	0	0	0	0	0	1	14668	1103	39	1		1	SLC5A5	19	18001723	Silent	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	10037037	18001723	41127260	52	20738											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36219035	36219035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MLL4	NM_014727	exon19	c.G4534A	p.D1512N	GCCCACGACCCCA	.	112	16	102	0	.	697	A	36219035	G	A	36219035	3	1	163	1	0	0	0	0	1	0	0	0	9623	1058	37	1	4608	1	MLL4	19	36219035	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	18217312	36219035	22909948	53	20739											
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46857241	46857241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PPP5C	NM_006247	exon2	c.G358C	p.E120Q	GACTACGAGACGG	.	128	24	62	0	.	227	C	46857241	G	C	46857241	3	2	163	1	0	0	0	0	1	0	0	0	12406	1059	37	4	364	4	PPP5C	19	46857241	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	10638206	46857241	12271742	54	20740											
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59029036	59029036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZBTB45	NM_032792	exon2	c.C5T	p.A2V	GCAGCCGCCATCT	.	127	6	94	0	.	90	A	59029036	G	A	59029036	3	1	163	1	0	0	0	0	1	0	0	0	17543	1087	38	1	1538	1	ZBTB45	19	59029036	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	12171795	59029036	99947	55	20741											
ZNF337	26152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25655887	25655887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZNF337	NM_015655	exon5	c.C2037G	p.H679Q	CTTTGAGTGTATC	.	179	42	148	1	.	90	C	25655887	G	C	25655887	3	2	163	1	0	0	0	0	1	0	0	0	17850	1020	36	4	222	4	ZNF337	20	25655887	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		25655887	37369633	56	20742											
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34797717	34797717	+	Missense_Mutation	SNP	G	G	T	rs140677677	by1000genomes;alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EPB41L1	NM_001258329	exon16	c.G1976T	p.R659L	TCTCCCGGGATCT	.	105	26	82	1	G|0.999;A|0.000	93	T	34797717	G	T	34797717	3	4	163	1	0	0	0	0	1	0	0	0	5152	1116	39	1	2030	1	EPB41L1	20	34797717	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10	9141830	34797717	28227803	57	20743											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35183471	35183471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ITSN1	NM_001001132	exon21	c.G2512T	p.V838L	TTGGCAGTAACCT	.	179	36	146	0	.	94	T	35183471	G	T	35183471	3	4	163	1	0	0	0	0	1	0	0	0	7926	1029	36	3	2590	3	ITSN1	21	35183471	Missense_Mutation	SNP	G	TCGA-HP-A5MZ-01A-21D-A27I-10		35183471	12946424	58	20744											
CASZ1	54897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	10713785	10713785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CASZ1	NM_001079843	exon11	c.C2329T	p.P777S	CCTGGGGCAGCAG	.	56	14	86	0	.	113	A	10713785	G	A	10713785	3	1	164	1	0	0	0	0	1	0	0	0	2685	1203	42	3	2998	3	CASZ1	1	10713785	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10		10713785	238536836	1	20745											
CLCNKA	1187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16351300	16351300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLCNKA	NM_004070	exon4	c.T272G	p.L91R	ACCTGCTCCGGTA	.	101	25	91	1	.	91	G	16351300	T	G	16351300	3	3	164	1	0	0	0	0	1	0	0	0	3469	1551	54	5	282	5	CLCNKA	1	16351300	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	5637515	16351300	232899321	2	20746											
UBXN10	127733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20517817	20517817	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	UBXN10	NM_152376	exon2	c.A763C	p.T255P	GACCTCACCAAAT	.	63	17	123	1	.	91	C	20517817	A	C	20517817	3	2	164	1	0	0	0	0	1	0	0	0	16909	159	6	5	765	5	UBXN10	1	20517817	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	4166517	20517817	228732804	3	20747											
EXTL1	2134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26355761	26355761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EXTL1	NM_004455	exon2	c.T857C	p.F286S	CGCGCTTCCTCCA	.	142	50	148	0	.	90	C	26355761	T	C	26355761	3	2	164	1	0	0	0	0	1	0	0	0	5325	1783	62	2	863	2	EXTL1	1	26355761	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	5837944	26355761	222894860	4	20748											
EBNA1BP2	10969	hgsc.bcm.edu;bcgsc.ca	37	1	43630464	43630464	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EBNA1BP2	NM_001159936	exon9	c.A885G	p.K295K	CCGTCGTTTAGCA	.	83	4	98	0	.	90	C	43630464	T	C	43630464	2	2	164	1	0	0	0	0	0	0	0	1	4885	1722	60	2		2	EBNA1BP2	1	43630464	Silent	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	17274703	43630464	205620157	5	20749											
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111147065	111147065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KCNA2	NM_001204269	exon3	c.C340T	p.R114W	AAAACCGAATTTC	.	46	15	76	0	.	91	A	111147065	G	A	111147065	3	1	164	1	0	0	0	0	1	0	0	0	8003	1057	37	1	1163	1	KCNA2	1	111147065	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	67516601	111147065	138103556	6	20750											
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156641173	156641173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NES	NM_006617	exon4	c.A2807T	p.E936V	TCCTCCTCCAGAG	.	113	6	73	0	.	520	A	156641173	T	A	156641173	3	1	164	1	0	0	0	0	1	0	0	0	10337	1551	54	4	2062	4	NES	1	156641173	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	45494108	156641173	92609448	7	20751											
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576234	158576234	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR10Z1	NM_001004478	exon1	c.G6T	p.G2G	AATGGGGCAGACC	.	72	39	93	0	.	70	T	158576234	G	T	158576234	2	4	164	1	0	0	0	0	0	0	0	1	10923	1190	42	3		3	OR10Z1	1	158576234	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	1935061	158576234	90674387	8	20752											
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160806007	160806007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CD244	NM_001166663	exon6	c.T887C	p.I296T	GAGTAGATGGTGC	.	97	46	105	0	.	91	G	160806007	A	G	160806007	3	3	164	1	0	0	0	0	1	0	0	0	2987	333	12	2	241	2	CD244	1	160806007	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	2229773	160806007	88444614	9	20753											
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167962525	167962525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DCAF6	NM_001198956	exon7	c.750delT	p.N250fs	TCTTAATAATAAG	.	154	37	153	0	.	516	-	167962525	T	-	167962525	7	5	164	1	0	1	0	1	0	0	0	0	4274	1403	49	0	776	0	DCAF6	1	167962525	Frame_Shift_Del	DEL	T	TCGA-HP-A5N0-01A-11D-A28X-10	7156518	167962525	81288096	10	20754											
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175299224	175299224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TNR	NM_003285	exon21	c.A3779G	p.Y1260C	CCGTTGTAGCTTC	.	106	27	91	0	.	324	C	175299224	T	C	175299224	3	2	164	1	0	0	0	0	1	0	0	0	16335	1638	57	2	309	2	TNR	1	175299224	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	7336699	175299224	73951397	11	20755											
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184702094	184702094	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EDEM3	NM_025191	exon6	c.C489A	p.I163I	CAGCATGATTGCC	.	75	12	86	0	.	91	T	184702094	G	T	184702094	2	4	164	1	0	0	0	0	0	0	0	1	4913	1280	45	3		3	EDEM3	1	184702094	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	9402870	184702094	64548527	12	20756											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190195248	190195248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM5C	NM_199051	exon6	c.A925C	p.T309P	TCCAGGTTTCAGT	.	57	29	72	0	.	228	G	190195248	T	G	190195248	3	3	164	1	0	0	0	0	1	0	0	0	5594	1725	60	5	1387	5	FAM5C	1	190195248	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	5493154	190195248	59055373	13	20757											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197111554	197111554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ASPM	NM_001206846	exon3	c.A1828G	p.K610E	ATGTTTTAGGCTC	.	93	27	92	0	.	615	C	197111554	T	C	197111554	3	2	164	1	0	0	0	0	1	0	0	0	1056	1763	61	2	8709	2	ASPM	1	197111554	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	6916306	197111554	52139067	14	20758											
DEGS1	8560	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	224371102	224371102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DEGS1	NM_003676	exon1	c.C64T	p.R22W	GCCGACCGGCGCC	.	90	22	73	0	.	90	T	224371102	C	T	224371102	3	4	164	1	0	0	0	0	1	0	0	0	4422	643	23	1	66	1	DEGS1	1	224371102	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	27259548	224371102	24879519	15	20759											
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231060591	231060591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TTC13	NM_024525	exon14	c.A1717G	p.R573G	ACCTTCTCCATTT	.	136	26	120	0	.	92	C	231060591	T	C	231060591	3	2	164	1	0	0	0	0	1	0	0	0	16677	1559	54	2	905	2	TTC13	1	231060591	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	6689489	231060591	18190030	16	20760											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	148680560	148680560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ACVR2A	NM_001616	exon9	c.A1096G	p.M366V	AGGTACATGGCTC	.	97	38	168	0	.	831	G	148680560	A	G	148680560	3	3	164	1	0	0	0	0	1	0	0	0	223	217	8	2	1130	2	ACVR2A	2	148680560	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10		148680560	94518813	17	20761											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152528994	152528994	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NEB	NM_004543	exon37	c.C4188A	p.A1396A	ATCCTGGGCCATC	.	210	91	344	0	.	145	T	152528994	G	T	152528994	2	4	164	1	0	0	0	0	0	0	0	1	10302	1219	43	3		3	NEB	2	152528994	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	3848434	152528994	90670379	18	20762											
SDPR	8436	hgsc.bcm.edu;broad.mit.edu	37	2	192700908	192700908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SDPR	NM_004657	exon2	c.C1019A	p.A340E	AGGGACGCTTCGG	.	84	4	120	0	.	92	T	192700908	G	T	192700908	3	4	164	1	0	0	0	0	1	0	0	0	13970	1087	38	1	262	1	SDPR	2	192700908	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	40171914	192700908	50498465	19	20763											
HECW2	57520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197189763	197189763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HECW2	NM_020760	exon6	c.G682T	p.G228W	CCTGCCCGTGGTG	.	228	77	266	1	.	668	A	197189763	C	A	197189763	3	1	164	1	0	0	0	0	1	0	0	0	7043	652	23	1	4132	1	HECW2	2	197189763	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	4488855	197189763	46009610	20	20764											
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215274960	215274960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SPAG16	NM_024532	exon16	c.C1817A	p.A606E	ACGAGGCACACAC	.	186	47	216	0	.	188	A	215274960	C	A	215274960	3	1	164	1	0	0	0	0	1	0	0	0	14978	710	25	3	1895	3	SPAG16	2	215274960	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	18085197	215274960	27924413	21	20765											
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230914503	230914503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC16A14	NM_152527	exon3	c.T377G	p.L126R	ATGAAGAGATAAT	.	248	43	252	0	.	96	C	230914503	A	C	230914503	3	2	164	1	0	0	0	0	1	0	0	0	14407	304	11	5	1167	5	SLC16A14	2	230914503	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	15639543	230914503	12284870	22	20766											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238280705	238280705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	COL6A3	NM_004369	exon9	c.G3955T	p.V1319L	TGGACACGTACTC	.	77	20	88	0	.	526	A	238280705	C	A	238280705	3	1	164	1	0	0	0	0	1	0	0	0	3701	536	19	1	5769	1	COL6A3	2	238280705	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	7366202	238280705	4918668	23	20767											
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	7494474	7494474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GRM7	NM_000844	exon6	c.T1355C	p.I452T	AGTATATACGCAA	.	124	43	159	0	.	526	C	7494474	T	C	7494474	3	2	164	1	0	0	0	0	1	0	0	0	6802	1406	49	2	1377	2	GRM7	3	7494474	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10		7494474	190527956	24	20768											
CSPG5	10675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47618646	47618646	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CSPG5	NM_006574	exon2	c.A870G	p.G290G	TCCACCTCCTACT	.	63	15	65	0	.	91	C	47618646	T	C	47618646	2	2	164	1	0	0	0	0	0	0	0	1	3961	1538	54	2		2	CSPG5	3	47618646	Silent	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	40124172	47618646	150403784	25	20769											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52393979	52393979	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH1	NM_015512	exon27	c.G4455A	p.Q1485Q	CATGCAGCGGGCA	.	176	69	203	0	.	67	A	52393979	G	A	52393979	2	1	164	1	0	0	0	0	0	0	0	1	4597	962	34	3		3	DNAH1	3	52393979	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	4775333	52393979	145628451	26	20770											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108133086	108133086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MYH15	NM_014981	exon31	c.G4198C	p.D1400H	TGGCATCCTCCAA	.	142	27	130	0	.	73	G	108133086	C	G	108133086	3	3	164	1	0	0	0	0	1	0	0	0	10034	855	30	4	1690	4	MYH15	3	108133086	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	55739107	108133086	89889344	27	20771											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178928226	178928226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	PIK3CA,NS,carcinoma,+1	PIK3CA	NM_006218	exon9	c.C1412T	p.P471L	AAACTCCATGCTT	.	99	4	114	0	.	27752	T	178928226	C	T	178928226	3	4	164	1	0	0	0	0	1	0	0	0	11913	594	21	3	1442	3	PIK3CA	3	178928226	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	70795140	178928226	19094204	28	20772											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3237426	3237426	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HTT	NM_002111	exon63	c.G8706T	p.L2902L	CAAGCTGAGTGTG	.	56	27	97	0	.	281	T	3237426	G	T	3237426	2	4	164	1	0	0	0	0	0	0	0	1	7457	1277	45	3		3	HTT	4	3237426	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10		3237426	187916850	29	20773											
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25671316	25671316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC34A2	NM_006424	exon7	c.T683A	p.V228E	TGTCCGTGTTGGT	.	171	57	186	0	.	95	A	25671316	T	A	25671316	3	1	164	1	0	0	0	0	1	0	0	0	14568	1696	59	4	705	4	SLC34A2	4	25671316	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	22433890	25671316	165482960	30	20774											
TMPRSS11D	9407	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	68725292	68725292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMPRSS11D	NM_004262	exon2	c.T113A	p.V38D	AAGTAAACAAGTA	.	206	18	266	1	.	91	T	68725292	A	T	68725292	3	4	164	1	0	0	0	0	1	0	0	0	16238	43	2	4	1179	4	TMPRSS11D	4	68725292	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	43053976	68725292	122428984	31	20775											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128816239	128816239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PLK4	NM_014264	exon14	c.G2694T	p.W898C	TGGTTGGGCTACA	.	37	13	79	0	.	333	T	128816239	G	T	128816239	3	4	164	1	0	0	0	0	1	0	0	0	12098	1241	43	3	2748	3	PLK4	4	128816239	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	60090947	128816239	62338037	32	20776											
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141484571	141484571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	UCP1	NM_021833	exon3	c.G427A	p.A143T	TCTGTGCTTGAAG	.	118	24	134	0	.	91	T	141484571	C	T	141484571	3	4	164	1	0	0	0	0	1	0	0	0	16927	797	28	3	510	3	UCP1	4	141484571	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	12668332	141484571	49669705	33	20777											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155163818	155163818	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DCHS2	NM_017639	exon22	c.T5683A	p.S1895T	CTTCAGAGGGGAG	.	89	34	100	0	.	94	T	155163818	A	T	155163818	3	4	164	1	0	0	0	0	1	0	0	0	4288	304	11	4	3083	4	DCHS2	4	155163818	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	13679247	155163818	35990458	34	20778											
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160253698	160253698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RAPGEF2	NM_014247	exon11	c.T1501C	p.S501P	CGCTACTCCATTC	.	169	43	231	0	.	637	C	160253698	T	C	160253698	3	2	164	1	0	0	0	0	1	0	0	0	13044	1551	54	2	1543	2	RAPGEF2	4	160253698	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	5089880	160253698	30900578	35	20779											
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173942670	173942670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GALNTL6	NM_001034845	exon12	c.C1532G	p.P511R	GTGAGCCACTGCA	.	113	44	168	0	.	137	G	173942670	C	G	173942670	3	3	164	1	0	0	0	0	1	0	0	0	6225	594	21	4	1574	4	GALNTL6	4	173942670	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	13688972	173942670	17211606	36	20780											
SORBS2	8470	hgsc.bcm.edu;bcgsc.ca	37	4	186544299	186544299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SORBS2	NM_001270771	exon16	c.C2572A	p.H858N	GGCGGTGCAGGAT	.	55	4	68	0	.	91	T	186544299	G	T	186544299	3	4	164	1	0	0	0	0	1	0	0	0	14928	1319	46	3	1066	3	SORBS2	4	186544299	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	12601629	186544299	4609977	37	20781											
LMBRD2	92255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36124328	36124328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LMBRD2	NM_001007527	exon7	c.C787A	p.P263T	TCAATGGGTGATT	.	174	41	246	0	.	90	T	36124328	G	T	36124328	3	4	164	1	0	0	0	0	1	0	0	0	8843	1232	43	3	1348	3	LMBRD2	5	36124328	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10		36124328	144790932	38	20782											
JMY	133746	broad.mit.edu;bcgsc.ca	37	5	78533507	78533522	+	Splice_Site	DEL	TGAGTGAGTGAGCTCC	TGAGTGAGTGAGCTCC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	TGAGTGAGTGAGCTCC	TGAGTGAGTGAGCTCC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	JMY	.	.	.	.	AGGAGGTGAGTGA	.	109	8	149	0	.	227	-	78533522	TGAGTGAGTGAGCTCC	-	78533507	8	5	164	1	0	1	0	1	0	0	1	0	7957	1710	59	0	1036	0	JMY	5	78533507	Splice_Site	DEL	TGAGTGAGTGAGCTCC	TCGA-HP-A5N0-01A-11D-A28X-10	42409179	78533507	102381753	39	20783											
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140857854	140857854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PCDHGC3	NM_032402	exon1	c.G2171C	p.R724T	AGTCTAGAGACCT	.	68	7	68	0	.	24	C	140857854	G	C	140857854	3	2	164	1	0	0	0	0	1	0	0	0	11569	942	33	4	2173	4	PCDHGC3	5	140857854	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	62324347	140857854	40057406	40	20784											
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160113232	160113232	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATP10B	NM_025153	exon6	c.C324T	p.P108P	CATGGAGGGCATC	.	145	40	154	0	.	72	A	160113232	G	A	160113232	2	1	164	1	0	0	0	0	0	0	0	1	1117	987	35	3		3	ATP10B	5	160113232	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	19255378	160113232	20802028	41	20785											
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	161324184	161324184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	GABRA1,NS,NS,0	GABRA1	NM_001127643	exon11	c.C1127A	p.T376N	GCTACACCCCTAA	.	120	7	125	0	.	93	A	161324184	C	A	161324184	3	1	164	1	0	0	0	0	1	0	0	0	6160	507	18	3	1161	3	GABRA1	5	161324184	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	1210952	161324184	19591076	42	20786											
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168233531	168233531	+	Silent	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLIT3	NM_001271946	exon9	c.G855T	p.T285T	GCTGCACGTGCAG	.	214	50	248	0	.	95	A	168233531	C	A	168233531	2	1	164	1	0	0	0	0	0	0	0	1	14741	523	19	1		1	SLIT3	5	168233531	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	6909347	168233531	12681729	43	20787											
DOK3	79930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176936802	176936802	+	Splice_Site	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DOK3	NM_024872	exon2	c.51+1G>A	.	CACGCACCTGGTT	.	125	30	158	0	.	226	T	176936802	C	T	176936802	5	4	164	1	0	0	0	0	0	0	1	0	4698	521	18	3	1814	3	DOK3	5	176936802	Splice_Site	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	8703271	176936802	3978458	44	20788											
HNRNPH1	3187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179047996	179047996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HNRNPH1	NM_001257293	exon4	c.G294T	p.K98N	AGTATGCTTCAAC	.	250	61	254	1	.	22	A	179047996	C	A	179047996	3	1	164	1	0	0	0	0	1	0	0	0	7266	796	28	3	1095	3	HNRNPH1	5	179047996	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	2111194	179047996	1867264	45	20789											
RNF130	55819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179393926	179393926	+	Missense_Mutation	SNP	C	C	T	rs138960112	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RNF130	NM_018434	exon7	c.G1030A	p.G344S	GGTCGCCGAGGGC	.	191	69	220	0	C|0.999;T|0.001	227	T	179393926	C	T	179393926	3	4	164	1	0	0	0	0	1	0	0	0	13438	652	23	1	241	1	RNF130	5	179393926	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	345930	179393926	1521334	46	20790											
MTO1	25821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74183325	74183325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MTO1	NM_133645	exon4	c.C773T	p.P258L	ATATACCGGACAA	.	96	8	157	0	.	96	T	74183325	C	T	74183325	3	4	164	1	0	0	0	0	1	0	0	0	9953	652	23	1	787	1	MTO1	6	74183325	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10		74183325	96931742	47	20791											
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74446154	74446154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CD109	NM_133493	exon5	c.C556G	p.L186V	AGTGATCTTGGAG	.	69	36	117	0	.	155	G	74446154	C	G	74446154	3	3	164	1	0	0	0	0	1	0	0	0	2963	913	32	4	574	4	CD109	6	74446154	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	262829	74446154	96668913	48	20792											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117638330	117638330	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ROS1	NM_002944	exon38	c.T6111C	p.Y2037Y	ACGCAAATAAGTA	.	126	6	214	0	.	1353	G	117638330	A	G	117638330	2	3	164	1	0	0	0	0	0	0	0	1	13531	108	4	2		2	ROS1	6	117638330	Silent	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	43192176	117638330	53476737	49	20793											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160494391	160494391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	IGF2R	NM_000876	exon34	c.G4837A	p.V1613M	AGTTTCGTGTGCA	.	164	7	233	0	.	118	A	160494391	G	A	160494391	3	1	164	1	0	0	0	0	1	0	0	0	7576	1145	40	1	4971	1	IGF2R	6	160494391	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	42856061	160494391	10620676	50	20794											
GPR31	2853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167571101	167571101	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPR31	NM_005299	exon1	c.C219T	p.F73F	CAGGTAGAAGGCG	.	170	47	265	0	.	90	A	167571101	G	A	167571101	2	1	164	1	0	0	0	0	0	0	0	1	6687	933	33	3		3	GPR31	6	167571101	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	7076710	167571101	3543966	51	20795											
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168443256	168443256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIF25	NM_030615	exon8	c.C845G	p.T282S	GAGTGACCGGGTT	.	56	31	105	0	.	92	G	168443256	C	G	168443256	3	3	164	1	0	0	0	0	1	0	0	0	8293	507	18	4	871	4	KIF25	6	168443256	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	872155	168443256	2671811	52	20796											
HOXA6	3203	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27186959	27186959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HOXA6	NM_024014	exon1	c.A410T	p.Y137F	CAAGGGTAAACCG	.	90	28	88	1	.	91	A	27186959	T	A	27186959	3	1	164	1	0	0	0	0	1	0	0	0	7296	1638	57	4	299	4	HOXA6	7	27186959	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10		27186959	131951704	53	20797											
CALCR	799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	93055779	93055779	+	Silent	SNP	G	G	A	rs145853724		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CALCR	NM_001164737	exon16	c.C1416T	p.I472I	AATTGGGATGTCG	.	93	6	128	0	G|1.000;A|0.000	664	A	93055779	G	A	93055779	2	1	164	1	0	0	0	0	0	0	0	1	2579	1164	41	3		3	CALCR	7	93055779	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	65868820	93055779	66082884	54	20798											
LMTK2	22853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97821009	97821009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LMTK2	NM_014916	exon11	c.G1232A	p.R411Q	ACCTGCGGCTGCA	.	86	23	127	0	.	1381	A	97821009	G	A	97821009	3	1	164	1	0	0	0	0	1	0	0	0	8859	1116	39	1	1274	1	LMTK2	7	97821009	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	4765230	97821009	61317654	55	20799											
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102108549	102108549	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LRWD1	NM_152892	exon6	c.T719G	p.L240R	TCCCACTCAGCCT	.	86	21	111	0	.	69	G	102108549	T	G	102108549	3	3	164	1	0	0	0	0	1	0	0	0	9047	1551	54	5	741	5	LRWD1	7	102108549	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	4287540	102108549	57030114	56	20800											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103179712	103179712	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RELN	NM_173054	exon45	c.T6993C	p.D2331D	CCTACTATCAAGG	.	120	41	119	0	.	574	G	103179712	A	G	103179712	2	3	164	1	0	0	0	0	0	0	0	1	13220	446	16	2		2	RELN	7	103179712	Silent	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	1071163	103179712	55958951	57	20801											
PIK3CG	5294	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	106508977	106508977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PIK3CG	NM_002649	exon2	c.C971T	p.P324L	AGTGGCCACTGGT	.	156	44	167	0	.	1316	T	106508977	C	T	106508977	3	4	164	1	0	0	0	0	1	0	0	0	11916	594	21	3	973	3	PIK3CG	7	106508977	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	3329265	106508977	52629686	58	20802											
TAS2R16	50833	broad.mit.edu;bcgsc.ca	37	7	122635089	122635089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TAS2R16	NM_016945	exon1	c.G600T	p.M200I	TGATGCCATGAGA	.	217	15	204	1	.	92	A	122635089	C	A	122635089	3	1	164	1	0	0	0	0	1	0	0	0	15566	594	21	3	279	3	TAS2R16	7	122635089	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	16126112	122635089	36503574	59	20803											
FLNC	2318	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	128482322	128482322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FLNC	NM_001127487	exon14	c.C2159T	p.P720L	TGATCCCCAACGG	.	144	10	166	1	.	141	T	128482322	C	T	128482322	3	4	164	1	0	0	0	0	1	0	0	0	5935	623	22	3	2213	3	FLNC	7	128482322	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	5847233	128482322	30656341	60	20804											
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175239	143175239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TAS2R41	NM_176883	exon1	c.C274G	p.L92V	CACTTCCTGAACT	.	126	19	138	0	.	92	G	143175239	C	G	143175239	3	3	164	1	0	0	0	0	1	0	0	0	15576	680	24	4	276	4	TAS2R41	7	143175239	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	14692917	143175239	15963424	61	20805											
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826880	143826880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR2A14	NM_001001659	exon1	c.G675T	p.L225F	CATCTTGAGGATC	.	175	19	166	0	.	90	T	143826880	G	T	143826880	3	4	164	1	0	0	0	0	1	0	0	0	10976	1281	45	3	677	3	OR2A14	7	143826880	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	651641	143826880	15311783	62	20806											
VIPR2	7434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158851225	158851225	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	VIPR2	NM_003382	exon5	c.C402T	p.Y134Y	GACACTGTAGCCC	.	54	15	80	0	.	91	A	158851225	G	A	158851225	2	1	164	1	0	0	0	0	0	0	0	1	17167	1372	48	3		3	VIPR2	7	158851225	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	15024345	158851225	287438	63	20807											
ESCO2	157570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27645507	27645507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ESCO2	NM_001017420	exon6	c.C1119G	p.D373E	AAAAGACCAGCTC	.	60	11	68	0	.	90	G	27645507	C	G	27645507	3	3	164	1	0	0	0	0	1	0	0	0	5249	506	18	4	1137	4	ESCO2	8	27645507	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10		27645507	118718515	64	20808											
ZMAT4	79698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	40554844	40554844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZMAT4	NM_024645	exon4	c.C269T	p.A90V	GAATCGGCCACCA	.	122	34	122	0	.	92	A	40554844	G	A	40554844	3	1	164	1	0	0	0	0	1	0	0	0	17691	1203	42	3	436	3	ZMAT4	8	40554844	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	12909337	40554844	105809178	65	20809											
CHRNA6	8973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42611206	42611206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CHRNA6	NM_004198	exon5	c.C1136A	p.A379D	CCTTTGGCAGGCC	.	124	42	116	0	.	90	T	42611206	G	T	42611206	3	4	164	1	0	0	0	0	1	0	0	0	3387	1203	42	3	356	3	CHRNA6	8	42611206	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	2056362	42611206	103752816	66	20810											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72975703	72975703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRPA1	NM_007332	exon5	c.G656A	p.R219K	CCAAACCTTAGTA	.	46	15	75	0	.	230	T	72975703	C	T	72975703	3	4	164	1	0	0	0	0	1	0	0	0	16574	681	24	3	2795	3	TRPA1	8	72975703	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	30364497	72975703	73388319	67	20811											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110539193	110539193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PKHD1L1	NM_177531	exon77	c.G12665T	p.R4222I	TTGGAAGAATGTG	.	109	14	132	0	.	145	T	110539193	G	T	110539193	3	4	164	1	0	0	0	0	1	0	0	0	11972	942	33	3	12971	3	PKHD1L1	8	110539193	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	37563490	110539193	35824829	68	20812											
TMEM71	137835	ucsc.edu;bcgsc.ca	37	8	133734357	133734357	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM71	NM_144649	exon7	c.C624A	p.T208T	CAACCTGGTTTCT	.	223	42	304	2	.	92	T	133734357	G	T	133734357	2	4	164	1	0	0	0	0	0	0	0	1	16197	1335	47	3		3	TMEM71	8	133734357	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	23195164	133734357	12629665	69	20813	125	2									
TMEM71	137835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133734358	133734358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM71	NM_144649	exon7	c.C623A	p.T208N	AACCTGGTTTCTA	.	218	41	301	1	.	92	T	133734358	G	T	133734358	3	4	164	1	0	0	0	0	1	0	0	0	16197	1261	44	3	223	3	TMEM71	8	133734358	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	1	133734358	12629664	70	20814	125	2									
ZNF250	58500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	146107239	146107239	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_021061	exon6	c.G1344A	p.E448E	GGGCTTCTCCCCA	.	168	54	196	0	.	.	T	146107239	C	T	146107239	2	4	164	1	0	0	0	0	0	0	0	1	17792	912	32	3		3	ZNF250	8	146107239	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	12372881	146107239	256783	71	20815											
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37746731	37746731	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FRMPD1	NM_014907	exon16	c.T4702G	p.L1568V	TTCTGTTTGACCC	.	116	18	131	0	.	159	G	37746731	T	G	37746731	3	3	164	1	0	0	0	0	1	0	0	0	6057	1838	64	5	4760	5	FRMPD1	9	37746731	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10		37746731	103466700	72	20816											
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77354337	77354337	+	Missense_Mutation	SNP	T	T	A	rs201318772	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRPM6	NM_017662	exon35	c.A5516T	p.K1839I	ATCAATTTTTGAG	.	198	20	259	1	T|0.999;C|0.001	335	A	77354337	T	A	77354337	3	1	164	1	0	0	0	0	1	0	0	0	16587	1841	64	4	572	4	TRPM6	9	77354337	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	39607606	77354337	63859094	73	20817											
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86905113	86905113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC28A3	NM_001199633	exon11	c.T1105C	p.S369P	TGGTAGAGAACCC	.	125	25	152	0	.	94	G	86905113	A	G	86905113	3	3	164	1	0	0	0	0	1	0	0	0	14533	304	11	2	1002	2	SLC28A3	9	86905113	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	9550776	86905113	54308318	74	20818											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	118950193	118950193	+	Silent	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PAPPA	NM_002581	exon2	c.C1176G	p.S392S	CATCTCCTGGGAG	.	150	43	130	0	.	77	G	118950193	C	G	118950193	2	3	164	1	0	0	0	0	0	0	0	1	11432	668	24	4		4	PAPPA	9	118950193	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	32045080	118950193	22263238	75	20819											
FNBP1	23048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132691907	132691907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_015033	exon7	c.T581C	p.L194P	TTCTGGAGAATGG	.	201	49	211	0	.	.	G	132691907	A	G	132691907	3	3	164	1	0	0	0	0	1	0	0	0	5965	304	11	2	1316	2	FNBP1	9	132691907	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	13741714	132691907	8521524	76	20820											
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14890638	14890638	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HSPA14	NM_016299	exon4	c.C252T	p.I84I	ATACATCGCGGAA	.	45	12	76	0	.	291	T	14890638	C	T	14890638	2	4	164	1	0	0	0	0	0	0	0	1	7407	874	31	1		1	HSPA14	10	14890638	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10		14890638	120644109	77	20821											
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15326009	15326009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM171A1	NM_001010924	exon2	c.T193C	p.S65P	TGCCAGAGGCTAT	.	97	35	143	0	.	138	G	15326009	A	G	15326009	3	3	164	1	0	0	0	0	1	0	0	0	5490	304	11	2	2507	2	FAM171A1	10	15326009	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	435371	15326009	120208738	78	20822											
PRF1	5551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72357968	72357968	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PRF1	NM_001083116	exon3	c.T1509C	p.S503S	GGAACCAGACTTG	.	80	43	143	1	.	578	G	72357968	A	G	72357968	2	3	164	1	0	0	0	0	0	0	0	1	12478	175	7	2		2	PRF1	10	72357968	Silent	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	57031959	72357968	63176779	79	20823											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	73437280	73437280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CDH23	NM_001171931	exon15	c.C1582T	p.R528C	ATCCAGCGCTTCA	.	120	9	148	0	.	563	T	73437280	C	T	73437280	3	4	164	1	0	0	0	0	1	0	0	0	3108	768	27	1	1867	1	CDH23	10	73437280	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	1079312	73437280	62097467	80	20824											
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	93558624	93558624	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TNKS2	NM_025235	exon1	c.C177T	p.S59S	GAAATCCACCCCG	.	62	28	69	0	.	541	T	93558624	C	T	93558624	2	4	164	1	0	0	0	0	0	0	0	1	16318	581	21	3		3	TNKS2	10	93558624	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	20121344	93558624	41976123	81	20825											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103909723	103909723	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PPRC1	NM_015062	exon14	c.C4932T	p.S1644S	AAAGAGCAAATTT	.	68	26	146	0	.	227	T	103909723	C	T	103909723	2	4	164	1	0	0	0	0	0	0	0	1	12410	709	25	3		3	PPRC1	10	103909723	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	10351099	103909723	31625024	82	20826											
ADAM8	101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135082352	135082352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ADAM8	NM_001109	exon19	c.C1963T	p.P655S	AGACGGGGAGGCT	.	72	25	69	1	.	90	A	135082352	G	A	135082352	3	1	164	1	0	0	0	0	1	0	0	0	252	1232	43	3	449	3	ADAM8	10	135082352	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	31172629	135082352	452395	83	20827											
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510297	5510297	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR52D1	NM_001005163	exon1	c.A361T	p.M121L	CTTGCCATGGCCT	.	174	49	181	0	.	68	T	5510297	A	T	5510297	3	4	164	1	0	0	0	0	1	0	0	0	11114	217	8	4	363	4	OR52D1	11	5510297	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10		5510297	129496219	84	20828											
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22272304	22272304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ANO5	NM_213599	exon11	c.C1031A	p.P344H	GTGACCCTGAGAT	.	123	41	155	0	.	515	A	22272304	C	A	22272304	3	1	164	1	0	0	0	0	1	0	0	0	700	681	24	3	1073	3	ANO5	11	22272304	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	16762007	22272304	112734212	85	20829											
ACTN3	89	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66322635	66322635	+	RNA	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ACTN3	.	.	.	.	CTCATCCACCGAC	.	115	27	134	0	.	90	A	66322635	C	A	66322635	1	1	164	0	1	0	0	0	0	0	0	0	206	594	21	3		3	ACTN3	11	66322635	RNA	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	44050331	66322635	68683881	86	20830											
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74980004	74980004	+	Splice_Site	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ARRB1	NM_004041	exon15	c.1023-1G>A	.	ACGTCGCTGAAAC	.	82	25	131	0	.	567	T	74980004	C	T	74980004	5	4	164	1	0	0	0	0	0	0	1	0	980	811	28	3	246	3	ARRB1	11	74980004	Splice_Site	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	8657369	74980004	60026512	87	20831											
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92918881	92918881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC36A4	NM_152313	exon2	c.A155G	p.Q52R	TCAAGTTGGTAAT	.	66	15	90	0	.	93	C	92918881	T	C	92918881	3	2	164	1	0	0	0	0	1	0	0	0	14596	1812	63	2	1399	2	SLC36A4	11	92918881	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	17938877	92918881	42087635	88	20832											
SIDT2	51092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117056884	117056884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SIDT2	NM_001040455	exon9	c.A907G	p.I303V	CTGGGTATATTTC	.	146	45	172	1	.	90	G	117056884	A	G	117056884	3	3	164	1	0	0	0	0	1	0	0	0	14303	449	16	2	941	2	SIDT2	11	117056884	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	24138003	117056884	17949632	89	20833											
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117282631	117282631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CEP164	NM_014956	exon32	c.G4284T	p.R1428S	CCCCAGGTTGTAT	.	117	36	147	0	.	69	T	117282631	G	T	117282631	3	4	164	1	0	0	0	0	1	0	0	0	3249	1252	44	3	4402	3	CEP164	11	117282631	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	225747	117282631	17723885	90	20834											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118362558	118362558	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MLL	NM_001197104	exon15	c.4919delA	p.E1640fs	CCCTTGAAAAAGA	.	76	12	101	0	.	1255	-	118362558	A	-	118362558	7	5	164	1	0	1	0	1	0	0	0	0	9620	246	9	0	4968	0	MLL	11	118362558	Frame_Shift_Del	DEL	A	TCGA-HP-A5N0-01A-11D-A28X-10	1079927	118362558	16643958	91	20835											
DDX6	1656	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118627983	118627983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DDX6	NM_004397	exon10	c.A1007T	p.Q336L	ATCGACTGGTTTA	.	90	17	119	1	.	659	A	118627983	T	A	118627983	3	1	164	1	0	0	0	0	1	0	0	0	4377	1580	55	4	460	4	DDX6	11	118627983	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	265425	118627983	16378533	92	20836											
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	10147806	10147806	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLEC1B	NM_016509	exon5	c.G478T	p.G160X	ATAATCCGACCCA	.	60	20	65	0	.	90	A	10147806	C	A	10147806	4	1	164	1	0	0	0	0	0	1	0	0	3506	661	23	1	219	1	CLEC1B	12	10147806	Nonsense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10		10147806	123704089	93	20837											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52760929	52760929	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KRT85	NM_002283	exon1	c.G261A	p.V87V	TCCGCACACGCCC	.	351	69	378	0	.	91	T	52760929	C	T	52760929	2	4	164	1	0	0	0	0	0	0	0	1	8499	465	17	3		3	KRT85	12	52760929	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	42613123	52760929	81090966	94	20838											
TMEM5	10329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64174920	64174920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM5	NM_014254	exon2	c.T291A	p.D97E	AACAGATCTCAGT	.	55	13	107	0	.	90	A	64174920	T	A	64174920	3	1	164	1	0	0	0	0	1	0	0	0	16171	1432	50	4	297	4	TMEM5	12	64174920	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	11413991	64174920	69676975	95	20839											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450892	85450892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LRRIQ1	NM_001079910	exon8	c.C2321A	p.P774Q	AATGCCCAGCCAA	.	40	11	88	0	.	95	A	85450892	C	A	85450892	3	1	164	1	0	0	0	0	1	0	0	0	9029	594	21	3	2347	3	LRRIQ1	12	85450892	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	21275972	85450892	48401003	96	20840											
CRY1	1407	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107395609	107395609	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CRY1	NM_004075	exon4	c.A528G	p.E176E	GCACTTTTCTATC	.	94	33	102	2	.	93	C	107395609	T	C	107395609	2	2	164	1	0	0	0	0	0	0	0	1	3903	1838	64	2		2	CRY1	12	107395609	Silent	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	21944717	107395609	26456286	97	20841											
SALL2	6297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21992350	21992350	+	Silent	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SALL2	NM_005407	exon2	c.A1512T	p.G504G	AGGGAGTCCTGGA	.	63	21	66	0	.	92	A	21992350	T	A	21992350	2	1	164	1	0	0	0	0	0	0	0	1	13811	1654	58	4		4	SALL2	14	21992350	Silent	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10		21992350	85357190	98	20842											
SOS2	6655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50655388	50655388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SOS2	NM_006939	exon5	c.A541T	p.I181L	AACCTATGTCATC	.	57	13	71	0	.	849	A	50655388	T	A	50655388	3	1	164	1	0	0	0	0	1	0	0	0	14937	1464	51	4	3533	4	SOS2	14	50655388	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	28663038	50655388	56694152	99	20843											
SPTB	6710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65260468	65260468	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SPTB	NM_001024858	exon13	c.G1913C	p.R638P	CAGAGTCGTTTGG	.	81	28	101	1	.	100	G	65260468	C	G	65260468	3	3	164	1	0	0	0	0	1	0	0	0	15117	884	31	4	5234	4	SPTB	14	65260468	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	14605080	65260468	42089072	100	20844											
SMEK1	55671	broad.mit.edu;ucsc.edu	37	14	91927921	91927921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SMEK1	NM_032560	exon15	c.T2156A	p.L719Q	GTTTTCAGAAGCA	.	88	16	144	2	.	226	T	91927921	A	T	91927921	3	4	164	1	0	0	0	0	1	0	0	0	14793	188	7	4	314	4	SMEK1	14	91927921	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	26667453	91927921	15421619	101	20845											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25924784	25924785	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	p.V1402F	TCAGGACAGCCTC	.	46	19	65	0	.	.	AC	25924785	CA	AC	25924784	3	1	164	1	0	0	0	0	1	0	0	0	1116	478	17	3	299	3	ATP10A	15	25924784	Missense_Mutation	DNP	CA	TCGA-HP-A5N0-01A-11D-A28X-10		25924784	76606608	102	20846											
CHRNA7	1139	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	32450652	32450652	+	Missense_Mutation	SNP	G	G	A	rs200236230		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CHRNA7	NM_001190455	exon7	c.G725A	p.C242Y	AGTGCTGCAAAGA	.	947	184	1045	2	.	91	A	32450652	G	A	32450652	3	1	164	1	0	0	0	0	1	0	0	0	3388	1319	46	3	664	3	CHRNA7	15	32450652	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	6525868	32450652	70080740	103	20847											
C15orf26	161502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81426689	81426689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	C15orf26	NM_173528	exon1	c.G19T	p.G7C	GTGTATGGTCCGG	.	215	40	203	0	.	90	T	81426689	G	T	81426689	3	4	164	1	0	0	0	0	1	0	0	0	1787	1348	47	3	21	3	C15orf26	15	81426689	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	48976037	81426689	21104703	104	20848											
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50750836	50750836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NOD2	NM_022162	exon6	c.C2581T	p.H861Y	TGTGCACACTCCA	.	146	43	182	0	.	231	T	50750836	C	T	50750836	3	4	164	1	0	0	0	0	1	0	0	0	10517	478	17	3	2603	3	NOD2	16	50750836	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10		50750836	39603917	105	20849											
DNAH9	1770	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11593045	11593045	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH9	NM_001372	exon20	c.G3906A	p.L1302L	CCAGCTGAAGGAG	.	140	57	204	1	.	168	A	11593045	G	A	11593045	2	1	164	1	0	0	0	0	0	0	0	1	4608	1277	45	3		3	DNAH9	17	11593045	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10		11593045	69602165	106	20850											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11597228	11597228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH9	NM_001372	exon21	c.T4658G	p.L1553R	AAGAGCTAGCTTA	.	55	32	108	0	.	168	G	11597228	T	G	11597228	3	3	164	1	0	0	0	0	1	0	0	0	4608	1522	53	5	4740	5	DNAH9	17	11597228	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10	4183	11597228	69597982	107	20851											
ZNF286A	57335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15619991	15619991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZNF286A	NM_020652	exon6	c.G953T	p.R318I	ATCAGAGAATTCA	.	146	59	283	0	.	90	T	15619991	G	T	15619991	3	4	164	1	0	0	0	0	1	0	0	0	17820	942	33	3	971	3	ZNF286A	17	15619991	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	4022763	15619991	65575219	108	20852											
KRTAP1-1	81851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39197352	39197352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_030967	exon1	c.G298A	p.G100S	CAATGCCACCACC	.	154	39	172	0	.	.	T	39197352	C	T	39197352	3	4	164	1	0	0	0	0	1	0	0	0	8502	594	21	3	239	3	KRTAP1-1	17	39197352	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	23577361	39197352	41997858	109	20853											
B4GALNT2	124872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47246920	47246920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	B4GALNT2	NM_153446	exon11	c.G1531T	p.G511W	CTCGTGGGGTCAT	.	69	26	53	0	.	154	T	47246920	G	T	47246920	3	4	164	1	0	0	0	0	1	0	0	0	1267	1232	43	3	1591	3	B4GALNT2	17	47246920	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	8049568	47246920	33948290	110	20854											
TRIM37	4591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57093047	57093047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRIM37	NM_015294	exon21	c.G2500T	p.D834Y	CTGAATCCAAAGC	.	185	65	203	2	.	660	A	57093047	C	A	57093047	3	1	164	1	0	0	0	0	1	0	0	0	16508	855	30	3	418	3	TRIM37	17	57093047	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	9846127	57093047	24102163	111	20855											
RNF213	57674	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78319696	78319696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RNF213	NM_001256071	exon29	c.A7561G	p.I2521V	CATATTATAGCTG	.	147	40	192	1	.	577	G	78319696	A	G	78319696	3	3	164	1	0	0	0	0	1	0	0	0	13477	449	16	2	7990	2	RNF213	17	78319696	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	21226649	78319696	2875514	112	20856											
GZMM	3004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	549779	549779	+	Silent	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GZMM	NM_005317	exon5	c.C762G	p.G254G	CACCGGCCGATCG	.	45	18	72	0	.	90	G	549779	C	G	549779	2	3	164	1	0	0	0	0	0	0	0	1	6919	726	26	4		4	GZMM	19	549779	Silent	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10		549779	58579204	113	20857											
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4219685	4219685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ANKRD24	NM_133475	exon19	c.C3101T	p.A1034V	CCGAGGCGGAAAG	.	122	38	148	0	.	68	T	4219685	C	T	4219685	3	4	164	1	0	0	0	0	1	0	0	0	653	768	27	1	3171	1	ANKRD24	19	4219685	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	3669906	4219685	54909298	114	20858											
SAFB2	9667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5621381	5621381	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SAFB2	NM_014649	exon2	c.T213C	p.P71P	TTCATCAGGATCT	.	95	5	113	0	.	90	G	5621381	A	G	5621381	2	3	164	1	0	0	0	0	0	0	0	1	13807	175	7	2		2	SAFB2	19	5621381	Silent	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	1401696	5621381	53507602	115	20859											
PODNL1	79883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14043535	14043538	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PODNL1	NM_024825	exon8	c.1519_1522del	p.507_508del	CTAGAATGTTTGG	.	127	25	132	0	.	90	-	14043538	TGTT	-	14043535	7	5	164	1	0	1	0	1	0	0	0	0	12179	1464	51	0	20	0	PODNL1	19	14043535	Frame_Shift_Del	DEL	TGTT	TCGA-HP-A5N0-01A-11D-A28X-10	8422154	14043535	45085448	116	20860											
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16918939	16918939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NWD1	NM_001007525	exon18	c.A4279G	p.S1427G	GAGATGAGCTACA	.	94	29	103	0	.	7	G	16918939	A	G	16918939	3	3	164	1	0	0	0	0	1	0	0	0	10781	304	11	2	3928	2	NWD1	19	16918939	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	2875404	16918939	42210044	117	20861											
EXOSC5	56915	broad.mit.edu;mdanderson.org	37	19	41892629	41892629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EXOSC5	NM_020158	exon6	c.T617C	p.L206P	TGCTGGAGCTGCG	.	37	6	35	0	.	90	G	41892629	A	G	41892629	3	3	164	1	0	0	0	0	1	0	0	0	5318	318	11	2	94	2	EXOSC5	19	41892629	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	24973690	41892629	17236354	118	20862											
CEACAM3	1084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42300619	42300619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CEACAM3	NM_001815	exon1	c.C10A	p.P4T	GGGCCCCCCTCAG	.	73	18	97	0	.	91	A	42300619	C	A	42300619	3	1	164	1	0	0	0	0	1	0	0	0	3193	623	22	3	12	3	CEACAM3	19	42300619	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	407990	42300619	16828364	119	20863											
TMEM145	284339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42827878	42827878	+	Silent	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM145	NM_173633	exon14	c.G1338C	p.T446T	CGTGACGTTTATC	.	194	30	206	0	.	90	C	42827878	G	C	42827878	2	2	164	1	0	0	0	0	0	0	0	1	16056	1132	40	4		4	TMEM145	19	42827878	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	527259	42827878	16301105	120	20864											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu	37	19	42858165	42858165	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MEGF8	NM_001271938	exon22	c.4000delA	p.T1334fs	AGCAGCACCCCCT	.	59	10	45	0	.	23	-	42858165	A	-	42858165	7	5	164	1	0	1	0	1	0	0	0	0	9463	159	6	0	3881	0	MEGF8	19	42858165	Frame_Shift_Del	DEL	A	TCGA-HP-A5N0-01A-11D-A28X-10	30287	42858165	16270818	121	20865											
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43523032	43523032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_002785	exon3	c.G599T	p.R200M	AGGGTCCTGTTGG	.	161	49	172	0	.	.	A	43523032	C	A	43523032	3	1	164	1	0	0	0	0	1	0	0	0	12654	681	24	3	420	3	PSG11	19	43523032	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	664867	43523032	15605951	122	20866											
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49472819	49472819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GYS1	NM_002103	exon16	c.C1940T	p.S647L	GACAGCGAGGGCG	.	31	12	41	0	.	524	A	49472819	G	A	49472819	3	1	164	1	0	0	0	0	1	0	0	0	6912	1059	37	1	277	1	GYS1	19	49472819	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	5949787	49472819	9656164	123	20867											
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51528911	51528911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KLK11	NM_144947	exon2	c.G73T	p.A25S	AGCGGGCCCCAGG	.	91	26	108	1	.	650	A	51528911	C	A	51528911	3	1	164	1	0	0	0	0	1	0	0	0	8399	739	26	3	870	3	KLK11	19	51528911	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	2056092	51528911	7600072	124	20868											
OSCAR	126014	hgsc.bcm.edu;bcgsc.ca	37	19	54598520	54598530	+	Frame_Shift_Del	DEL	CTGCGCCAGTC	CTGCGCCAGTC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CTGCGCCAGTC	CTGCGCCAGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OSCAR	NM_130771	exon6	c.760_770del	p.254_257del	TTCTGACTGCGCC	.	247	34	344	0	.	68	-	54598530	CTGCGCCAGTC	-	54598520	7	5	164	1	0	1	0	1	0	0	0	0	11285	565	20	0	37	0	OSCAR	19	54598520	Frame_Shift_Del	DEL	CTGCGCCAGTC	TCGA-HP-A5N0-01A-11D-A28X-10	3069609	54598520	4530463	125	20869											
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54850148	54850148	+	Missense_Mutation	SNP	C	C	A	rs181991337	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LILRA4	NM_012276	exon2	c.G59T	p.R20L	TGCACCCGGGTCC	.	108	31	135	0	C|0.999;T|0.000	91	A	54850148	C	A	54850148	3	1	164	1	0	0	0	0	1	0	0	0	8787	652	23	1	1468	1	LILRA4	19	54850148	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	251628	54850148	4278835	126	20870											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56241199	56241199	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NLRP9	NM_176820	exon3	c.C1992T	p.L664L	TTACATGAGTTTT	.	69	19	88	0	.	294	A	56241199	G	A	56241199	2	1	164	1	0	0	0	0	0	0	0	1	10484	1277	45	3		3	NLRP9	19	56241199	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	1391051	56241199	2887784	127	20871											
NLRP13	126204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56416366	56416366	+	Missense_Mutation	SNP	C	C	A	rs201367180	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NLRP13	NM_176810	exon8	c.G2560T	p.G854C	TTATGCCATCATC	.	154	38	187	0	C|0.999;T|0.001	211	A	56416366	C	A	56416366	3	1	164	1	0	0	0	0	1	0	0	0	10475	594	21	3	585	3	NLRP13	19	56416366	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	175167	56416366	2712617	128	20872											
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	33345295	33345295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NCOA6	NM_014071	exon7	c.A1256T	p.Q419L	GGCTGCTGCAAGG	.	105	22	128	0	.	292	A	33345295	T	A	33345295	3	1	164	1	0	0	0	0	1	0	0	0	10233	1580	55	4	4971	4	NCOA6	20	33345295	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10		33345295	29680225	129	20873											
SNAI1	6615	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48600475	48600475	+	Missense_Mutation	SNP	C	C	G	rs34261470	byfrequency;alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SNAI1	NM_005985	exon2	c.C197G	p.A66G	TCCTGGCGCCCCA	.	31	8	21	0	C|0.979;T|0.021	227	G	48600475	C	G	48600475	3	3	164	1	0	0	0	0	1	0	0	0	14826	768	27	4	203	4	SNAI1	20	48600475	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	15255180	48600475	14425045	130	20874											
BHLHE23	128408	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	61637464	61637464	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	BHLHE23	NM_080606	exon1	c.C615T	p.D205D	GCACTTGTCAGGG	.	23	9	20	0	.	90	A	61637464	G	A	61637464	2	1	164	1	0	0	0	0	0	0	0	1	1422	1368	48	3		3	BHLHE23	20	61637464	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	13036989	61637464	1388056	131	20875											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	36960750	36960750	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon4	c.A620T	p.Q207L	CGCAGCTGTTTGT	.	65	5	105	0	.	90	A	36960750	T	A	36960750	3	1	164	1	0	0	0	0	1	0	0	0	2557	1580	55	4	355	4	CACNG2	22	36960750	Missense_Mutation	SNP	T	TCGA-HP-A5N0-01A-11D-A28X-10		36960750	14343816	132	20876											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	36960792	36960792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon4	c.T578C	p.V193A	ACCCCGACCATCT	.	80	7	123	0	.	90	G	36960792	A	G	36960792	3	3	164	1	0	0	0	0	1	0	0	0	2557	275	10	2	397	2	CACNG2	22	36960792	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	42	36960792	14343774	133	20877											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36983573	36983574	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	p.K78I	AATTTGCTTGCAC	.	184	39	154	0	.	.	AA	36983574	CT	AA	36983573	3	1	164	1	0	0	0	0	1	0	0	0	2557	796	28	3	749	3	CACNG2	22	36983573	Missense_Mutation	DNP	CT	TCGA-HP-A5N0-01A-11D-A28X-10	22781	36983573	14320993	134	20878											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3238423	3238423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MXRA5	NM_015419	exon5	c.C5303G	p.S1768C	TTGTAGGAACCTG	.	112	33	154	0	.	136	C	3238423	G	C	3238423	3	2	164	1	0	0	0	0	1	0	0	0	10003	1174	41	4	3195	4	MXRA5	23	3238423	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10		3238423	152032137	135	20879											
SHROOM2	357	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	9841727	9841727	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SHROOM2	NM_001649	exon2	c.G201A	p.K67K	CGACAAGTTACTG	.	194	56	262	2	.	198	A	9841727	G	A	9841727	2	1	164	1	0	0	0	0	0	0	0	1	14294	1020	36	3		3	SHROOM2	23	9841727	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	6603304	9841727	145428833	136	20880											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	23411941	23411941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PTCHD1	NM_173495	exon3	c.C2306T	p.A769V	ATTGTGCTCCAAT	.	107	11	126	0	.	135	T	23411941	C	T	23411941	3	4	164	1	0	0	0	0	1	0	0	0	12732	797	28	3	2316	3	PTCHD1	23	23411941	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	13570214	23411941	131858619	137	20881											
KLHL15	80311	ucsc.edu;bcgsc.ca	37	X	24006091	24006091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KLHL15	NM_030624	exon4	c.T1762G	p.C588G	GGTTGCATACTTG	.	537	176	529	2	.	131	C	24006091	A	C	24006091	3	2	164	1	0	0	0	0	1	0	0	0	8371	217	8	5	56	5	KLHL15	23	24006091	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	594150	24006091	131264469	138	20882											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	34149907	34149907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM47A	NM_203408	exon1	c.G489T	p.W163C	ACAAGCCCAAGCG	.	152	12	224	0	.	134	A	34149907	C	A	34149907	3	1	164	1	0	0	0	0	1	0	0	0	5569	624	22	3	1890	3	FAM47A	23	34149907	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	10143816	34149907	121120653	139	20883											
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41555817	41555817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPR34	NM_001097579	exon3	c.A931T	p.I311F	AATGAGATCATGC	.	103	36	143	0	.	131	T	41555817	A	T	41555817	3	4	164	1	0	0	0	0	1	0	0	0	6689	333	12	4	933	4	GPR34	23	41555817	Missense_Mutation	SNP	A	TCGA-HP-A5N0-01A-11D-A28X-10	7405910	41555817	113714743	140	20884											
PHF8	23133	ucsc.edu;bcgsc.ca	37	X	54011484	54011484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PHF8	NM_001184896	exon18	c.C2414T	p.P805L	GAAGCAGGACTGT	.	139	45	162	2	.	133	A	54011484	G	A	54011484	3	1	164	1	0	0	0	0	1	0	0	0	11840	1000	35	3	914	3	PHF8	23	54011484	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	12455667	54011484	101259076	141	20885											
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	101970175	101970185	+	Frame_Shift_Del	DEL	CCAGGCATGGG	CCAGGCATGGG	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CCAGGCATGGG	CCAGGCATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPRASP2	NM_138437	exon4	c.378_388del	p.126_130del	TGAGGCCCAGGCA	.	125	29	146	0	.	131	-	101970185	CCAGGCATGGG	-	101970175	7	5	164	1	0	1	0	1	0	0	0	0	6723	610	22	0	380	0	GPRASP2	23	101970175	Frame_Shift_Del	DEL	CCAGGCATGGG	TCGA-HP-A5N0-01A-11D-A28X-10	47958691	101970175	53300385	142	20886											
AIFM1	9131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129264035	129264035	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	AIFM1	NM_004208	exon15	c.C1680T	p.Y560Y	TTTGCCGTAGTCC	.	251	33	229	0	.	586	A	129264035	G	A	129264035	2	1	164	1	0	0	0	0	0	0	0	1	426	1140	40	1		1	AIFM1	23	129264035	Silent	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	27293860	129264035	26006525	143	20887											
FAM122B	159090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133927919	133927919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM122B	NM_001170756	exon2	c.C103T	p.L35F	GTGAAAGGTCACT	.	47	7	43	0	.	130	A	133927919	G	A	133927919	3	1	164	1	0	0	0	0	1	0	0	0	5420	1000	35	3	810	3	FAM122B	23	133927919	Missense_Mutation	SNP	G	TCGA-HP-A5N0-01A-11D-A28X-10	4663884	133927919	21342641	144	20888											
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	138728988	138728988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MCF2	NM_001171876	exon3	c.G100T	p.V34L	CTATTACTTCCTC	.	596	107	551	0	.	227	A	138728988	C	A	138728988	3	1	164	1	0	0	0	0	1	0	0	0	9378	565	20	3	3096	3	MCF2	23	138728988	Missense_Mutation	SNP	C	TCGA-HP-A5N0-01A-11D-A28X-10	4801069	138728988	16541572	145	20889											
PGD	5226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10468143	10468143	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PGD	NM_002631	exon6	c.C465T	p.T155T	CAAGACCATCTTC	.	144	10	105	0	.	91	T	10468143	C	T	10468143	2	4	165	1	0	0	0	0	0	0	0	1	11787	581	21	3		3	PGD	1	10468143	Silent	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10		10468143	238782478	1	20890											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	19499468	19499468	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UBR4	NM_020765	exon25	c.G3411A	p.E1137E	AAAATGCTCATCC	.	157	12	138	0	.	612	T	19499468	C	T	19499468	2	4	165	1	0	0	0	0	0	0	0	1	16901	796	28	3		3	UBR4	1	19499468	Silent	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	9031325	19499468	229751153	2	20891											
FGR	2268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	27949607	27949607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FGR	NM_001042729	exon4	c.C275A	p.T92N	TCCTCAGTTCGAG	.	320	17	221	1	.	547	T	27949607	G	T	27949607	3	4	165	1	0	0	0	0	1	0	0	0	5874	1029	36	3	1354	3	FGR	1	27949607	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	8450139	27949607	221301014	3	20892											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53279323	53279323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZYG11B	NM_024646	exon11	c.G1811A	p.G604E	CAGCTGGAATTAT	.	97	14	84	0	.	94	A	53279323	G	A	53279323	3	1	165	1	0	0	0	0	1	0	0	0	18250	1174	41	3	1853	3	ZYG11B	1	53279323	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	25329716	53279323	195971298	4	20893											
SLAMF1	6504	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160589594	160589594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SLAMF1	NM_003037	exon5	c.C836T	p.T279M	TAGATCGTAAGGC	.	103	8	98	1	.	154	A	160589594	G	A	160589594	3	1	165	1	0	0	0	0	1	0	0	0	14367	1145	40	1	183	1	SLAMF1	1	160589594	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	107310271	160589594	88661027	5	20894											
FAM5C	339479	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	190068069	190068069	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FAM5C	NM_199051	exon8	c.C1380T	p.C460C	GGTGCCGCAGCGG	.	139	9	117	1	.	228	A	190068069	G	A	190068069	2	1	165	1	0	0	0	0	0	0	0	1	5594	1079	38	1		1	FAM5C	1	190068069	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	29478475	190068069	59182552	6	20895											
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu	37	1	203797536	203797536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZC3H11A	NM_014827	exon7	c.T284C	p.L95P	TTTTCCTACCTCC	.	214	11	177	0	.	515	C	203797536	T	C	203797536	3	2	165	1	0	0	0	0	1	0	0	0	17557	1522	53	2	294	2	ZC3H11A	1	203797536	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10	13729467	203797536	45453085	7	20896											
SRGAP2	23380	broad.mit.edu;bcgsc.ca	37	1	206634640	206634640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	AAGATGGCTGCCC	.	396	35	308	1	.	.	T	206634640	G	T	206634640	3	4	165	1	0	0	0	0	1	0	0	0	15145	1203	42	3	2913	3	SRGAP2	1	206634640	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	2837104	206634640	42615981	8	20897											
CNST	163882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	246811218	246811218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CNST	NM_152609	exon9	c.A1715G	p.D572G	ACGACGACTCCGA	.	156	9	117	0	.	90	G	246811218	A	G	246811218	3	3	165	1	0	0	0	0	1	0	0	0	3634	275	10	2	1745	2	CNST	1	246811218	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10	40176578	246811218	2439403	9	20898											
STARD7	56910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96861116	96861116	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	STARD7	NM_020151	exon2	c.G462A	p.R154R	TGGGCGCCGCCAC	.	154	13	85	0	.	68	T	96861116	C	T	96861116	2	4	165	1	0	0	0	0	0	0	0	1	15261	726	26	3		3	STARD7	2	96861116	Silent	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10		96861116	146338257	10	20899											
IWS1	55677	hgsc.bcm.edu;broad.mit.edu	37	2	128247456	128247457	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IWS1	NM_017969	exon11	c.2111_2112insA	p.R704fs	TGCTCCCTTTCTT	.	159	11	126	0	.	91	T	128247457	-	T	128247456	7	5	165	1	0	1	1	0	0	0	0	0	7931	681	24	0	364	0	IWS1	2	128247456	Frame_Shift_Ins	INS	-	TCGA-K7-A5RF-01A-11D-A28X-10	31386340	128247456	114951917	11	20900											
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37988645	37988645	+	Silent	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CTDSPL	NM_001008392	exon2	c.A177C	p.P59P	CCCTCCACCCAGC	.	71	5	50	0	.	90	C	37988645	A	C	37988645	2	2	165	1	0	0	0	0	0	0	0	1	4005	146	6	5		5	CTDSPL	3	37988645	Silent	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10		37988645	160033785	12	20901											
CSRNP1	64651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	39184867	39184867	+	Silent	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CSRNP1	NM_033027	exon5	c.G1449C	p.V483V	GGGTGGCACTGAG	.	130	9	111	0	.	230	G	39184867	C	G	39184867	2	3	165	1	0	0	0	0	0	0	0	1	3963	697	25	4		4	CSRNP1	3	39184867	Silent	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	1196222	39184867	158837563	13	20902											
SEC22C	9117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	42610528	42610528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SEC22C	NM_001201584	exon2	c.T11G	p.I4S	AAAAAGATCACGG	.	304	21	250	0	.	90	C	42610528	A	C	42610528	3	2	165	1	0	0	0	0	1	0	0	0	13990	333	12	5	970	5	SEC22C	3	42610528	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10	3425661	42610528	155411902	14	20903											
AP2M1	1173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183898651	183898651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	AP2M1	NM_001025205	exon5	c.G438T	p.Q146H	AGAGCAGTCACAG	.	231	19	197	0	.	90	T	183898651	G	T	183898651	3	4	165	1	0	0	0	0	1	0	0	0	742	1029	36	3	459	3	AP2M1	3	183898651	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	141288123	183898651	14123779	15	20904											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39448160	39448160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KLB	NM_175737	exon4	c.C1814T	p.S605L	GGGCCTCGGTCCT	.	136	9	93	0	.	69	T	39448160	C	T	39448160	3	4	165	1	0	0	0	0	1	0	0	0	8332	893	31	1	1828	1	KLB	4	39448160	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10		39448160	151706116	16	20905											
CORIN	10699	hgsc.bcm.edu;broad.mit.edu	37	4	47663761	47663761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CORIN	NM_006587	exon12	c.C1702A	p.Q568K	AGGTTTGATTGTC	.	108	6	64	0	.	91	T	47663761	G	T	47663761	3	4	165	1	0	0	0	0	1	0	0	0	3752	1299	45	3	1470	3	CORIN	4	47663761	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	8215601	47663761	143490515	17	20906											
CASP6	839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	110615726	110615726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CASP6	NM_001226	exon5	c.C438G	p.D146E	ACACTTGTCTCCT	.	271	16	216	0	.	660	C	110615726	G	C	110615726	3	2	165	1	0	0	0	0	1	0	0	0	2675	1368	48	4	455	4	CASP6	4	110615726	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	62951965	110615726	80538550	18	20907											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	75893275	75893275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IQGAP2	NM_006633	exon10	c.G919T	p.V307L	GCTGCAGTGGACC	.	184	13	168	0	.	96	T	75893275	G	T	75893275	3	4	165	1	0	0	0	0	1	0	0	0	7815	1029	36	3	957	3	IQGAP2	5	75893275	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10		75893275	105021985	19	20908											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	80063794	80063794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MSH3	NM_002439	exon14	c.C1939G	p.H647D	TTATATCACCTAA	.	125	9	99	0	.	661	G	80063794	C	G	80063794	3	3	165	1	0	0	0	0	1	0	0	0	9871	826	29	4	1993	4	MSH3	5	80063794	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	4170519	80063794	100851466	20	20909											
PGGT1B	5229	broad.mit.edu;bcgsc.ca	37	5	114572220	114572220	+	Splice_Site	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PGGT1B	NM_005023	exon6	c.480-1G>T	.	CAAAAACTGAAAA	.	145	9	111	1	.	90	A	114572220	C	A	114572220	5	1	165	1	0	0	0	0	0	0	1	0	11789	579	20	3	674	3	PGGT1B	5	114572220	Splice_Site	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	34508426	114572220	66343040	21	20910											
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148407630	148407630	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SH3TC2	NM_024577	exon11	c.C1665A	p.I555I	AATGTGGATGGCC	.	262	17	186	0	.	92	T	148407630	G	T	148407630	2	4	165	1	0	0	0	0	0	0	0	1	14262	1164	41	3		3	SH3TC2	5	148407630	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	33835410	148407630	32507630	22	20911											
CNOT6	57472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179956354	179956354	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CNOT6	NM_015455	exon2	c.A78G	p.G26G	AAATGGAAAGAAA	.	316	25	252	0	.	90	G	179956354	A	G	179956354	2	3	165	1	0	0	0	0	0	0	0	1	3622	233	9	2		2	CNOT6	5	179956354	Silent	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10	31548724	179956354	958906	23	20912											
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180582509	180582509	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	OR2V2	NM_206880	exon1	c.C567T	p.A189A	GCTGGCCTGTGTA	.	249	20	192	0	.	69	T	180582509	C	T	180582509	2	4	165	1	0	0	0	0	0	0	0	1	11031	668	24	3		3	OR2V2	5	180582509	Silent	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	626155	180582509	332751	24	20913											
EPM2A	7957	hgsc.bcm.edu;broad.mit.edu	37	6	145948714	145948714	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	EPM2A	NM_005670	exon4	c.C834T	p.C278C	CCAGCCGCAGACA	.	74	4	82	0	.	415	A	145948714	G	A	145948714	2	1	165	1	0	0	0	0	0	0	0	1	5183	1079	38	1		1	EPM2A	6	145948714	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10		145948714	25166353	25	20914											
EIF3B	8662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2406209	2406209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	EIF3B	NM_001037283	exon8	c.A1339C	p.S447R	ACGCTTAGCATCT	.	172	17	131	0	.	68	C	2406209	A	C	2406209	3	2	165	1	0	0	0	0	1	0	0	0	5013	420	15	5	1369	5	EIF3B	7	2406209	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10		2406209	156732454	26	20915											
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20201371	20201371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MACC1	NM_182762	exon4	c.G115A	p.E39K	CCATACCTGTAAT	.	60	7	36	0	.	93	T	20201371	C	T	20201371	3	4	165	1	0	0	0	0	1	0	0	0	9143	695	24	3	2459	3	MACC1	7	20201371	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	17795162	20201371	138937292	27	20916											
IL6	3569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	22767126	22767126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IL6	NM_000600	exon2	c.C83T	p.A28V	TCCCTGCCCCAGT	.	104	7	71	0	.	514	T	22767126	C	T	22767126	3	4	165	1	0	0	0	0	1	0	0	0	7701	739	26	3	89	3	IL6	7	22767126	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	2565755	22767126	136371537	28	20917											
CHN2	1124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29407578	29407578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CHN2	NM_004067	exon3	c.C119T	p.P40L	CTCGTCCCAAGAG	.	59	6	35	0	.	229	T	29407578	C	T	29407578	3	4	165	1	0	0	0	0	1	0	0	0	3363	623	22	3	129	3	CHN2	7	29407578	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	6640452	29407578	129731085	29	20918											
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	50444279	50444279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IKZF1	NM_006060	exon4	c.C209A	p.A70D	GGCGTGCCTGTGA	.	122	12	89	0	.	1242	A	50444279	C	A	50444279	3	1	165	1	0	0	0	0	1	0	0	0	7614	739	26	3	219	3	IKZF1	7	50444279	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	21036701	50444279	108694384	30	20919											
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99273802	99273802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CYP3A5	NM_001190484	exon2	c.A101G	p.K34R	AGTCTCTTAAAAA	.	273	28	169	0	.	90	C	99273802	T	C	99273802	3	2	165	1	0	0	0	0	1	0	0	0	4180	1609	56	2	1455	2	CYP3A5	7	99273802	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10	48829523	99273802	59864861	31	20920											
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107115727	107115727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GPR22	NM_005295	exon3	c.C1222A	p.P408T	ATAGATCCTAAAA	.	121	7	81	0	.	92	A	107115727	C	A	107115727	3	1	165	1	0	0	0	0	1	0	0	0	6682	855	30	3	1224	3	GPR22	7	107115727	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	7841925	107115727	52022936	32	20921											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	3072177	3072177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CSMD1	NM_033225	exon30	c.T4709C	p.I1570T	TTCATTATATTTC	.	144	9	118	0	.	86	G	3072177	A	G	3072177	3	3	165	1	0	0	0	0	1	0	0	0	3944	449	16	2	6149	2	CSMD1	8	3072177	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10		3072177	143291845	33	20922											
C8orf74	203076	broad.mit.edu;bcgsc.ca	37	8	10530197	10530197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001040032	exon1	c.G22A	p.G8R	CCCCAGGGAGTGA	.	151	11	98	2	.	.	A	10530197	G	A	10530197	3	1	165	1	0	0	0	0	1	0	0	0	2436	1233	43	3	24	3	C8orf74	8	10530197	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	7458020	10530197	135833825	34	20923											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	35608295	35608295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UNC5D	NM_080872	exon13	c.T2131C	p.Y711H	AGAGTTTACTGTG	.	284	23	204	0	.	96	C	35608295	T	C	35608295	3	2	165	1	0	0	0	0	1	0	0	0	16992	1754	61	2	2181	2	UNC5D	8	35608295	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10	25078098	35608295	110755727	35	20924											
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	93026974	93026974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RUNX1T1	NM_001198679	exon4	c.C478T	p.P160S	AGGAAGGCCCATT	.	110	7	66	0	.	1196	A	93026974	G	A	93026974	3	1	165	1	0	0	0	0	1	0	0	0	13747	1203	42	3	1549	3	RUNX1T1	8	93026974	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	57418679	93026974	53337048	36	20925											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144891130	144891130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SCRIB	NM_015356	exon15	c.G1764T	p.Q588H	CTCAGGCTGCCCC	.	97	5	101	0	.	228	A	144891130	C	A	144891130	3	1	165	1	0	0	0	0	1	0	0	0	13937	796	28	3	3295	3	SCRIB	8	144891130	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	51864156	144891130	1472892	37	20926											
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	104303192	104303192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RNF20	NM_019592	exon5	c.T563C	p.I188T	CCCAGATTGTGAC	.	143	7	136	0	.	231	C	104303192	T	C	104303192	3	2	165	1	0	0	0	0	1	0	0	0	13473	1493	52	2	577	2	RNF20	9	104303192	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10		104303192	36910239	38	20927											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	34671814	34671814	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PARD3	NM_001184788	exon9	c.C1053T	p.P351P	AATGATGGGTGTA	.	249	16	229	0	.	92	A	34671814	G	A	34671814	2	1	165	1	0	0	0	0	0	0	0	1	11443	1335	47	3		3	PARD3	10	34671814	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10		34671814	100862933	39	20928											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	55719518	55719518	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PCDH15	NM_001142763	exon24	c.C3111T	p.I1037I	GCGTGGGATCTCA	.	75	8	58	0	.	193	A	55719518	G	A	55719518	2	1	165	1	0	0	0	0	0	0	0	1	11511	1164	41	3		3	PCDH15	10	55719518	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	21047704	55719518	79815229	40	20929											
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	93749020	93749020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	BTAF1	NM_003972	exon20	c.A2537G	p.N846S	AGACCAACCAGGA	.	112	9	73	0	.	92	G	93749020	A	G	93749020	3	3	165	1	0	0	0	0	1	0	0	0	1536	43	2	2	2615	2	BTAF1	10	93749020	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10	38029502	93749020	41785727	41	20930											
LBX1	10660	broad.mit.edu;mdanderson.org	37	10	102988554	102988554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LBX1	NM_006562	exon1	c.G19T	p.G7C	CCTTGCCGTCCTC	.	49	5	30	0	.	90	A	102988554	C	A	102988554	3	1	165	1	0	0	0	0	1	0	0	0	8653	652	23	1	834	1	LBX1	10	102988554	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	9239534	102988554	32546193	42	20931											
SH3PXD2A	9644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105362908	105362908	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SH3PXD2A	NM_014631	exon14	c.C1983A	p.S661S	GGAAAAGGAGGCT	.	55	6	31	0	.	226	T	105362908	G	T	105362908	2	4	165	1	0	0	0	0	0	0	0	1	14256	987	35	3		3	SH3PXD2A	10	105362908	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	2374354	105362908	30171839	43	20932											
KRTAP5-2	440021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1619335	1619335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KRTAP5-2	NM_001004325	exon1	c.G146A	p.C49Y	CCCCCACAGCTGG	.	189	17	136	0	.	44	T	1619335	C	T	1619335	3	4	165	1	0	0	0	0	1	0	0	0	8561	478	17	3	391	3	KRTAP5-2	11	1619335	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10		1619335	133387181	44	20933											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31552686	31552686	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	DENND5B	NM_144973	exon16	c.G2970T	p.L990L	AGTGGTCAGCTTC	.	205	11	144	0	.	24	A	31552686	C	A	31552686	2	1	165	1	0	0	0	0	0	0	0	1	4437	813	29	3		3	DENND5B	12	31552686	Silent	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10		31552686	102299209	45	20934											
KRT73	319101	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53004991	53004991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KRT73	NM_175068	exon6	c.G1107T	p.K369N	CACCTGCTTCTTC	.	163	13	127	1	.	157	A	53004991	C	A	53004991	3	1	165	1	0	0	0	0	1	0	0	0	8486	796	28	3	531	3	KRT73	12	53004991	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	21452305	53004991	80846904	46	20935											
SPATA7	55812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88904449	88904449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SPATA7	NM_018418	exon12	c.A1483G	p.I495V	ATGCCTATTTATA	.	122	11	81	0	.	91	G	88904449	A	G	88904449	3	3	165	1	0	0	0	0	1	0	0	0	15013	449	16	2	1529	2	SPATA7	14	88904449	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10		88904449	18445091	47	20936											
PAQR4	124222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3021213	3021213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PAQR4	NM_152341	exon2	c.G222T	p.Q74H	GGGTCAGCTGGGC	.	145	8	111	0	.	68	T	3021213	G	T	3021213	3	4	165	1	0	0	0	0	1	0	0	0	11437	962	34	3	228	3	PAQR4	16	3021213	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10		3021213	87333540	48	20937											
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30794703	30794703	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001080417	exon3	c.A946T	p.K316X	ATGGCTTCTCGCC	.	223	14	157	0	.	.	A	30794703	T	A	30794703	4	1	165	1	0	0	0	0	0	1	0	0	18050	1792	62	4	1667	4	ZNF629	16	30794703	Nonsense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10	27773490	30794703	59560050	49	20938											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1554786	1554786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PRPF8	NM_006445	exon41	c.A6572G	p.Q2191R	ACATCCTGGGGTG	.	166	7	134	0	.	525	C	1554786	T	C	1554786	3	2	165	1	0	0	0	0	1	0	0	0	12575	1580	55	2	447	2	PRPF8	17	1554786	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10		1554786	79640424	50	20939											
WNK4	65266	broad.mit.edu;bcgsc.ca	37	17	40937151	40937151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	WNK4	NM_032387	exon5	c.C1207A	p.P403T	AAGATACCCGAGG	.	140	7	108	1	.	336	A	40937151	C	A	40937151	3	1	165	1	0	0	0	0	1	0	0	0	17377	507	18	3	1225	3	WNK4	17	40937151	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	39382365	40937151	40258059	51	20940											
KCNH6	81033	hgsc.bcm.edu;bcgsc.ca	37	17	61613103	61613103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KCNH6	NM_030779	exon6	c.G1175A	p.R392H	TGGACCGCTACTC	.	165	10	131	0	.	91	A	61613103	G	A	61613103	3	1	165	1	0	0	0	0	1	0	0	0	8036	1087	38	1	1197	1	KCNH6	17	61613103	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	20675952	61613103	19582107	52	20941											
YIF1B	90522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38796124	38796124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	YIF1B	NM_001039672	exon8	c.C813G	p.I271M	TGCCAAGATCTTC	.	281	23	242	0	.	68	C	38796124	G	C	38796124	3	2	165	1	0	0	0	0	1	0	0	0	17473	932	33	4	135	4	YIF1B	19	38796124	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10		38796124	20332859	53	20942											
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42486221	42486221	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATP1A3	NM_001256214	exon9	c.A1070T	p.K357M	CAGTTCTTCCGGG	.	294	19	213	0	.	92	A	42486221	T	A	42486221	3	1	165	1	0	0	0	0	1	0	0	0	1130	1609	56	4	2070	4	ATP1A3	19	42486221	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10	3690097	42486221	16642762	54	20943											
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43968547	43968547	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LYPD3	NM_014400	exon2	c.C141T	p.N47N	CATCTTGTTCGGG	.	111	12	95	0	.	91	A	43968547	G	A	43968547	2	1	165	1	0	0	0	0	0	0	0	1	9111	1368	48	3		3	LYPD3	19	43968547	Silent	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	1482326	43968547	15160436	55	20944											
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51129160	51129160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SYT3	NM_032298	exon5	c.T1396C	p.F466L	CTGAGAAGCCAGT	.	140	10	117	0	.	155	G	51129160	A	G	51129160	3	3	165	1	0	0	0	0	1	0	0	0	15472	72	3	2	392	2	SYT3	19	51129160	Missense_Mutation	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10	7160613	51129160	7999823	56	20945											
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	56499259	56499259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	NLRP8	NM_176811	exon10	c.C3127G	p.L1043V	GACTGCCTATCCC	.	128	6	93	0	.	361	G	56499259	C	G	56499259	3	3	165	1	0	0	0	0	1	0	0	0	10483	680	24	4	3165	4	NLRP8	19	56499259	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10	5370099	56499259	2629724	57	20946											
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58863684	58863684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	A1BG	NM_130786	exon4	c.C578T	p.S193F	GGCTCAGAGAGGG	.	100	12	68	0	.	90	A	58863684	G	A	58863684	3	1	165	1	0	0	0	0	1	0	0	0	1	942	33	3	929	3	A1BG	19	58863684	Missense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	2364425	58863684	265299	58	20947											
GNAS	2778	hgsc.bcm.edu;broad.mit.edu	37	20	57415270	57415270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GNAS	NM_016592	exon1	c.T109C	p.C37R	CTCTCCTGCTCCA	.	70	4	53	0	.	4767	C	57415270	T	C	57415270	3	2	165	1	0	0	0	0	1	0	0	0	6510	1580	55	2	111	2	GNAS	20	57415270	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10		57415270	5610250	59	20948											
NDUFV3	4731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	44324091	44324091	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	NDUFV3	NM_021075	exon3	c.A969G	p.Q323Q	GCTGCAAGCCAGT	.	110	6	73	0	.	92	G	44324091	A	G	44324091	2	3	165	1	0	0	0	0	0	0	0	1	10301	69	3	2		2	NDUFV3	21	44324091	Silent	SNP	A	TCGA-K7-A5RF-01A-11D-A28X-10		44324091	3805804	60	20949											
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	40216999	40216999	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ENTHD1	NM_152512	exon5	c.A831G	p.A277A	TTTACCTGCACCC	.	76	7	49	0	.	93	C	40216999	T	C	40216999	2	2	165	1	0	0	0	0	0	0	0	1	5137	1594	55	2		2	ENTHD1	22	40216999	Silent	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10		40216999	11087567	61	20950											
P2RY4	5030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69479048	69479048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	P2RY4	NM_002565	exon1	c.G427T	p.A143S	GTAGTGCCCGAAG	.	111	13	101	0	.	540	A	69479048	C	A	69479048	3	1	165	1	0	0	0	0	1	0	0	0	11353	739	26	3	674	3	P2RY4	23	69479048	Missense_Mutation	SNP	C	TCGA-K7-A5RF-01A-11D-A28X-10		69479048	85791512	62	20951											
DCAF12L2	340578	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	125298989	125298989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	DCAF12L2	NM_001013628	exon1	c.C919T	p.R307X	TCTCTCGGCAGTA	.	174	26	133	1	.	113	A	125298989	G	A	125298989	4	1	165	1	0	0	0	0	0	1	0	0	4265	1124	39	1	476	1	DCAF12L2	23	125298989	Nonsense_Mutation	SNP	G	TCGA-K7-A5RF-01A-11D-A28X-10	55819941	125298989	29971571	63	20952											
ATP11C	286410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	138878508	138878508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATP11C	NM_001010986	exon12	c.A1139T	p.D380V	TCCTTATCCCATG	.	143	26	151	0	.	198	A	138878508	T	A	138878508	3	1	165	1	0	0	0	0	1	0	0	0	1121	1435	50	4	2398	4	ATP11C	23	138878508	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10	13579519	138878508	16392052	64	20953											
KDM5D	8284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	21901515	21901515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KDM5D	NM_001146705	exon6	c.A556G	p.K186E	TATCTTTTACCTC	.	109	5	91	0	.	560	C	21901515	T	C	21901515	3	2	165	1	0	0	0	0	1	0	0	0	8136	1850	64	2	4248	2	KDM5D	24	21901515	Missense_Mutation	SNP	T	TCGA-K7-A5RF-01A-11D-A28X-10		21901515	37472051	65	20954											
NPHP4	261734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	5964775	5964775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NPHP4	NM_015102	exon16	c.G2045A	p.R682Q	TGCAGTCGTGGCG	.	297	33	210	2	.	515	T	5964775	C	T	5964775	3	4	166	1	0	0	0	0	1	0	0	0	10581	884	31	1	2295	1	NPHP4	1	5964775	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10		5964775	243285846	1	20955											
CELA3A	10136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22336295	22336295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CELA3A	NM_005747	exon7	c.T740C	p.I247T	ACTTCATCTGGAA	.	375	61	326	0	.	45	C	22336295	T	C	22336295	3	2	166	1	0	0	0	0	1	0	0	0	3213	1435	50	2	766	2	CELA3A	1	22336295	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	16371520	22336295	226914326	2	20956											
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22902826	22902826	+	Silent	SNP	C	C	T	rs145476843	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EPHA8	NM_020526	exon3	c.C276T	p.D92D	CCGAGACGGCGCC	.	406	82	310	1	C|1.000;T|0.000	1380	T	22902826	C	T	22902826	2	4	166	1	0	0	0	0	0	0	0	1	5173	535	19	1		1	EPHA8	1	22902826	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	566531	22902826	226347795	3	20957											
C1QA	712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22965803	22965803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C1QA	NM_015991	exon3	c.A641T	p.Q214L	GTGACCAGGTCTG	.	123	23	95	0	.	90	T	22965803	A	T	22965803	3	4	166	1	0	0	0	0	1	0	0	0	1954	188	7	4	647	4	C1QA	1	22965803	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	62977	22965803	226284818	4	20958											
JUN	3725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59248012	59248012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JUN	NM_002228	exon1	c.C731T	p.P244L	TCGATGGGGGACA	.	81	19	69	0	.	1270	A	59248012	G	A	59248012	3	1	166	1	0	0	0	0	1	0	0	0	7969	1232	43	3	268	3	JUN	1	59248012	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	36282209	59248012	190002609	5	20959											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94578571	94578571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ABCA4	NM_000350	exon2	c.A118G	p.I40V	ACCAGATCAAGAC	.	216	29	202	0	.	162	C	94578571	T	C	94578571	3	2	166	1	0	0	0	0	1	0	0	0	34	1435	50	2	6899	2	ABCA4	1	94578571	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	35330559	94578571	154672050	6	20960											
EFNA3	1944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155057577	155057577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFNA3	NM_004952	exon2	c.G139A	p.E47K	CGGCGAGAGGGCT	.	137	27	127	0	.	90	A	155057577	G	A	155057577	3	1	166	1	0	0	0	0	1	0	0	0	4952	943	33	3	145	3	EFNA3	1	155057577	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	60479006	155057577	94193044	7	20961											
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156303388	156303388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CCT3	NM_005998	exon5	c.G254C	p.R85P	TGGGTCCGGCTAA	.	55	6	52	0	.	92	G	156303388	C	G	156303388	3	3	166	1	0	0	0	0	1	0	0	0	2954	652	23	4	1423	4	CCT3	1	156303388	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	1245811	156303388	92947233	8	20962											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176853524	176853524	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASTN1	NM_004319	exon19	c.C3177A	p.L1059L	TTGACGGAGGAGG	.	196	28	175	0	.	319	T	176853524	G	T	176853524	2	4	166	1	0	0	0	0	0	0	0	1	1064	1161	41	3		3	ASTN1	1	176853524	Silent	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	20550136	176853524	72397097	9	20963											
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186909157	186909157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G4A	NM_024420	exon10	c.G964T	p.A322S	AATACTGCACAAT	.	70	14	73	0	.	721	T	186909157	G	T	186909157	3	4	166	1	0	0	0	0	1	0	0	0	12001	1319	46	3	998	3	PLA2G4A	1	186909157	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	10055633	186909157	62341464	10	20964											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201184848	201184848	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGFN1	NM_001164586	exon15	c.G9177T	p.G3059G	CCTGGGGGATGGC	.	213	37	193	0	.	71	T	201184848	G	T	201184848	2	4	166	1	0	0	0	0	0	0	0	1	7590	1219	43	3		3	IGFN1	1	201184848	Silent	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	14275691	201184848	48065773	11	20965											
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205065957	205065957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBBP5	NM_005057	exon12	c.G1249A	p.G417S	GGGGGCCGTAAGG	.	124	22	111	0	.	226	T	205065957	C	T	205065957	3	4	166	1	0	0	0	0	1	0	0	0	13102	652	23	1	379	1	RBBP5	1	205065957	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	3881109	205065957	44184664	12	20966											
HHAT	55733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210847644	210847644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HHAT	NM_001170587	exon11	c.A1408T	p.T470S	TGGGTGACCCTCT	.	107	20	92	0	.	92	T	210847644	A	T	210847644	3	4	166	1	0	0	0	0	1	0	0	0	7089	275	10	4	1545	4	HHAT	1	210847644	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	5781687	210847644	38402977	13	20967											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240071769	240071769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CHRM3	NM_000740	exon5	c.A1018G	p.N340D	AACAACAATGATG	.	185	26	167	0	.	95	G	240071769	A	G	240071769	3	3	166	1	0	0	0	0	1	0	0	0	3378	130	5	2	1020	2	CHRM3	1	240071769	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	29224125	240071769	9178852	14	20968											
ASAP2	8853	broad.mit.edu;mdanderson.org	37	2	9347355	9347355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASAP2	NM_001135191	exon1	c.A122T	p.E41V	CCATCGAGGAGGT	.	49	8	32	0	.	90	T	9347355	A	T	9347355	3	4	166	1	0	0	0	0	1	0	0	0	1011	304	11	4	124	4	ASAP2	2	9347355	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10		9347355	233852018	15	20969											
SOCS5	9655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46986955	46986955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	SOCS5,NS,carcinoma,0	SOCS5	NM_144949	exon2	c.G1286A	p.R429Q	ATGCCCGAATTGA	.	216	25	245	0	.	659	A	46986955	G	A	46986955	3	1	166	1	0	0	0	0	1	0	0	0	14917	1058	37	1	1288	1	SOCS5	2	46986955	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	37639600	46986955	196212418	16	20970											
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68365900	68365900	+	Missense_Mutation	SNP	G	G	A	rs35021866		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR92	NM_001256476	exon5	c.C607T	p.R203W	CCCACCGTAATGC	.	117	9	119	0	G|0.983;A|0.017	68	A	68365900	G	A	68365900	3	1	166	1	0	0	0	0	1	0	0	0	17336	1144	40	1	482	1	WDR92	2	68365900	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	21378945	68365900	174833473	17	20971											
ITPRIPL1	150771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96992598	96992598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ITPRIPL1	NM_178495	exon1	c.A253G	p.T85A	TTCTGGACAGGAG	.	138	18	130	0	.	69	G	96992598	A	G	96992598	3	3	166	1	0	0	0	0	1	0	0	0	7924	275	10	2	269	2	ITPRIPL1	2	96992598	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	28626698	96992598	146206775	18	20972											
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118575029	118575029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DDX18	NM_006773	exon2	c.A95G	p.N32S	CCTCAAATCTGAC	.	23	4	26	0	.	290	G	118575029	A	G	118575029	3	3	166	1	0	0	0	0	1	0	0	0	4345	101	4	2	101	2	DDX18	2	118575029	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	21582431	118575029	124624344	19	20973											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179438598	179438598	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TTN	NM_001267550	exon326	c.G72261A	p.L24087L	GTTTACCAGATTA	.	127	14	123	0	.	636	T	179438598	C	T	179438598	2	4	166	1	0	0	0	0	0	0	0	1	16732	581	21	3		3	TTN	2	179438598	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	60863569	179438598	63760775	20	20974											
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231927267	231927267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMD1	NM_002807	exon4	c.C182T	p.A61V	TTGCAGCCTTAGT	.	53	6	48	0	.	92	T	231927267	C	T	231927267	3	4	166	1	0	0	0	0	1	0	0	0	12692	739	26	3	196	3	PSMD1	2	231927267	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	52488669	231927267	11272106	21	20975											
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	15613198	15613198	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HACL1	NM_012260	exon12	c.A1072T	p.K358X	TGCTCTTCATTTT	.	47	7	62	0	.	90	A	15613198	T	A	15613198	4	1	166	1	0	0	0	0	0	1	0	0	6941	1792	62	4	688	4	HACL1	3	15613198	Nonsense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		15613198	182409232	22	20976											
TBC1D5	9779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	17349528	17349528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TBC1D5	NM_014744	exon14	c.T1094C	p.V365A	TAATCTACTAAAC	.	190	38	224	0	.	91	G	17349528	A	G	17349528	3	3	166	1	0	0	0	0	1	0	0	0	15620	391	14	2	1399	2	TBC1D5	3	17349528	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	1736330	17349528	180672902	23	20977											
ZNF445	353274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44492403	44492403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF445	NM_181489	exon5	c.G650A	p.G217E	TGGTCTCCCGGGC	.	125	9	110	0	.	91	T	44492403	C	T	44492403	3	4	166	1	0	0	0	0	1	0	0	0	17915	855	30	3	2461	3	ZNF445	3	44492403	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	27142875	44492403	153530027	24	20978											
ERC2	26059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56468548	56468548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ERC2	NM_015576	exon2	c.T488A	p.L163H	CGGAGGAGGTCAT	.	153	20	137	1	.	24	T	56468548	A	T	56468548	3	4	166	1	0	0	0	0	1	0	0	0	5211	304	11	4	2439	4	ERC2	3	56468548	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	11976145	56468548	141553882	25	20979											
DPPA2	151871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	109028174	109028174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DPPA2	NM_138815	exon4	c.A185G	p.H62R	AGTAGATGACCTA	.	111	18	73	0	.	93	C	109028174	T	C	109028174	3	2	166	1	0	0	0	0	1	0	0	0	4734	1464	51	2	731	2	DPPA2	3	109028174	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	52559626	109028174	88994256	26	20980											
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	121712594	121712594	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ILDR1	NM_001199799	exon7	c.A1002T	p.P334P	GATCAGTGGGGGC	.	201	21	185	0	.	91	A	121712594	T	A	121712594	2	1	166	1	0	0	0	0	0	0	0	1	7709	1683	59	4		4	ILDR1	3	121712594	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	12684420	121712594	76309836	27	20981											
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132297694	132297694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ACAD11	NM_032169	exon15	c.A1720G	p.M574V	TGTTCATGGGAAC	.	67	10	79	0	.	91	C	132297694	T	C	132297694	3	2	166	1	0	0	0	0	1	0	0	0	109	1464	51	2	646	2	ACAD11	3	132297694	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	10585100	132297694	65724736	28	20982											
A4GNT	51146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137843669	137843669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	A4GNT	NM_016161	exon3	c.C460T	p.R154C	CCAGGCGGGATGC	.	137	21	138	0	.	90	A	137843669	G	A	137843669	3	1	166	1	0	0	0	0	1	0	0	0	7	1116	39	1	566	1	A4GNT	3	137843669	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	5545975	137843669	60178761	29	20983											
ATP1B3	483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	141632520	141632520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP1B3	NM_001679	exon4	c.C373A	p.L125I	AAGAACCTCACAG	.	116	18	102	0	.	90	A	141632520	C	A	141632520	3	1	166	1	0	0	0	0	1	0	0	0	1134	681	24	3	387	3	ATP1B3	3	141632520	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	3788851	141632520	56389910	30	20984											
SLC9A9	285195	broad.mit.edu;ucsc.edu	37	3	143292967	143292967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A9	NM_173653	exon8	c.G963A	p.W321X	GGCACTCCAAGAA	.	438	68	382	1	.	229	T	143292967	C	T	143292967	4	4	166	1	0	0	0	0	0	1	0	0	14721	856	30	3	1010	3	SLC9A9	3	143292967	Nonsense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	1660447	143292967	54729463	31	20985											
PLSCR5	389158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	146318107	146318107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001085420	exon2	c.A157T	p.S53C	GGAGACTGACTGT	.	46	9	44	0	.	.	A	146318107	T	A	146318107	3	1	166	1	0	0	0	0	1	0	0	0	12113	1580	55	4	682	4	PLSCR5	3	146318107	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	3025140	146318107	51704323	32	20986											
SIAH2	6478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	150460068	150460068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SIAH2	NM_005067	exon2	c.A835G	p.T279A	GGGGCGTGGCCTC	.	366	50	338	2	.	227	C	150460068	T	C	150460068	3	2	166	1	0	0	0	0	1	0	0	0	14300	1696	59	2	143	2	SIAH2	3	150460068	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	4141961	150460068	47562362	33	20987											
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	157188168	157188169	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	p.F97I	TCCCAAAGGGTCT	.	151	24	141	0	.	.	TT	157188169	AG	TT	157188168	3	4	166	1	0	0	0	0	1	0	0	0	17151	72	3	4	2382	4	VEPH1	3	157188168	Missense_Mutation	DNP	AG	TCGA-K7-A5RG-01A-11D-A28X-10	6728100	157188168	40834262	34	20988											
MUC20	200958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195452975	195452978	+	Frame_Shift_Del	DEL	CCCA	CCCA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	CCCA	CCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_152673	exon3	c.988_991del	p.330_331del	CCACTCCCCACTA	.	455	44	416	0	.	.	-	195452978	CCCA	-	195452975	7	5	166	1	0	1	0	1	0	0	0	0	9976	623	22	0	998	0	MUC20	3	195452975	Frame_Shift_Del	DEL	CCCA	TCGA-K7-A5RG-01A-11D-A28X-10	38264807	195452975	2569455	35	20989											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3179109	3179109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTT	NM_002111	exon34	c.G4458T	p.Q1486H	GGGCCAGTTCAGG	.	55	10	58	0	.	281	T	3179109	G	T	3179109	3	4	166	1	0	0	0	0	1	0	0	0	7457	1020	36	3	4592	3	HTT	4	3179109	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10		3179109	187975167	36	20990											
RBPJ	3516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	26426076	26426076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBPJ	NM_005349	exon7	c.G648T	p.Q216H	ACAGCAGTGGGGA	.	83	7	65	0	.	659	T	26426076	G	T	26426076	3	4	166	1	0	0	0	0	1	0	0	0	13161	1020	36	3	733	3	RBPJ	4	26426076	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	23246967	26426076	164728200	37	20991											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57216008	57216008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AASDH	NM_181806	exon11	c.A1909G	p.T637A	TGAATGTCACATC	.	137	19	153	0	.	94	C	57216008	T	C	57216008	3	2	166	1	0	0	0	0	1	0	0	0	22	1667	58	2	1407	2	AASDH	4	57216008	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	30789932	57216008	133938268	38	20992											
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346647	71346647	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	MUC7,NS,carcinoma,+1	MUC7	NM_001145007	exon4	c.C186T	p.S62S	AAAGTCCTATAAA	.	161	30	161	0	.	93	T	71346647	C	T	71346647	2	4	166	1	0	0	0	0	0	0	0	1	9981	668	24	3		3	MUC7	4	71346647	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	14130639	71346647	119807629	39	20993											
ADH5	128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100003145	100003146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ADH5	NM_000671	exon3	c.237_238insG	p.G79fs	AGTAACTCCCTCA	.	191	29	192	0	.	227	C	100003146	-	C	100003145	7	5	166	1	0	1	1	0	0	0	0	0	311	1538	54	0	915	0	ADH5	4	100003145	Frame_Shift_Ins	INS	-	TCGA-K7-A5RG-01A-11D-A28X-10	28656498	100003145	91151131	40	20994											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156696144	156696144	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_000857	exon3	c.A102T	p.E34D	TGAAGAAGGACAG	.	30	4	41	0	.	.	T	156696144	A	T	156696144	3	4	166	1	0	0	0	0	1	0	0	0	6895	69	3	4	112	4	GUCY1B3	4	156696144	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	56692999	156696144	34458132	41	20995											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156726268	156726268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_000857	exon13	c.C1723A	p.P575T	ATGTCTCCAGAAA	.	186	32	169	0	.	.	A	156726268	C	A	156726268	3	1	166	1	0	0	0	0	1	0	0	0	6895	855	30	3	1773	3	GUCY1B3	4	156726268	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	30124	156726268	34428008	42	20996											
SPOCK3	50859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	168155168	168155168	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SPOCK3	NM_016950	exon2	c.A157T	p.K53X	CTTCCTTGTCATA	.	141	27	141	0	.	136	A	168155168	T	A	168155168	4	1	166	1	0	0	0	0	0	1	0	0	15080	1821	63	4	1197	4	SPOCK3	4	168155168	Nonsense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	11428900	168155168	22999108	43	20997											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	481703	481703	+	Silent	SNP	G	G	A	rs200474984		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A3	NM_004174	exon9	c.C1494T	p.I498I	GTGCCCGATCTGT	.	141	13	129	0	G|0.999;A|0.001	90	A	481703	G	A	481703	2	1	166	1	0	0	0	0	0	0	0	1	14713	1048	37	1		1	SLC9A3	5	481703	Silent	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10		481703	180433557	44	20998											
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34823722	34823722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RAI14	NM_001145525	exon17	c.A1784C	p.K595T	TGAATAAGGAGAA	.	151	30	121	0	.	91	C	34823722	A	C	34823722	3	2	166	1	0	0	0	0	1	0	0	0	13008	72	3	5	1894	5	RAI14	5	34823722	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	34342019	34823722	146091538	45	20999											
HTR1A	3350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63256701	63256701	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTR1A	NM_000524	exon1	c.G846A	p.R282R	ACCTTGCCTCACC	.	132	19	105	0	.	94	T	63256701	C	T	63256701	2	4	166	1	0	0	0	0	0	0	0	1	7436	738	26	3		3	HTR1A	5	63256701	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	28432979	63256701	117658559	46	21000											
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78940987	78940987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PAPD4	NM_173797	exon9	c.C793T	p.P265S	AAAGTGCCAATTG	.	184	24	183	0	.	69	T	78940987	C	T	78940987	3	4	166	1	0	0	0	0	1	0	0	0	11424	739	26	3	819	3	PAPD4	5	78940987	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	15684286	78940987	101974273	47	21001											
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140175547	140175547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDHA2	NM_031495	exon1	c.A998T	p.H333L	CAGGACATTGTAA	.	207	31	182	0	.	94	T	140175547	A	T	140175547	3	4	166	1	0	0	0	0	1	0	0	0	11524	217	8	4	1000	4	PCDHA2	5	140175547	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	61234560	140175547	40739713	48	21002											
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	170738472	170738472	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TLX3	NM_021025	exon3	c.C745T	p.Q249X	GCCTTCCAAAAGA	.	322	38	242	0	.	658	T	170738472	C	T	170738472	4	4	166	1	0	0	0	0	0	1	0	0	15959	595	21	3	755	3	TLX3	5	170738472	Nonsense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	30562925	170738472	10176788	49	21003											
KIAA1191	57179	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	175774612	175774612	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1191	NM_020444	exon9	c.T909A	p.T303T	GAAGCCAGTGGGT	.	30	4	27	0	.	91	T	175774612	A	T	175774612	2	4	166	1	0	0	0	0	0	0	0	1	8212	175	7	4		4	KIAA1191	5	175774612	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	5036140	175774612	5140648	50	21004											
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4892439	4892439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CDYL	NM_004824	exon2	c.C517A	p.Q173K	CAGGGTCAGGAGG	.	126	24	113	0	.	90	A	4892439	C	A	4892439	3	1	166	1	0	0	0	0	1	0	0	0	3185	827	29	3	523	3	CDYL	6	4892439	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10		4892439	166222628	51	21005											
TMEM14C	51522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10728899	10728899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TMEM14C	NM_001165258	exon5	c.A226G	p.M76V	GGCATTATGGGAA	.	79	12	73	0	.	90	G	10728899	A	G	10728899	3	3	166	1	0	0	0	0	1	0	0	0	16062	449	16	2	240	2	TMEM14C	6	10728899	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	5836460	10728899	160386168	52	21006											
MSH5	4439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31726633	31726633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MSH5	NM_025259	exon15	c.G1358A	p.S453N	CATGCAGTGTCAT	.	217	29	161	0	.	661	A	31726633	G	A	31726633	3	1	166	1	0	0	0	0	1	0	0	0	9873	1029	36	3	1412	3	MSH5	6	31726633	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	20997734	31726633	139388434	53	21007											
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39607439	39607439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIF6	NM_145027	exon4	c.G346A	p.D116N	CTCTGTCACTGTA	.	147	18	131	0	.	713	T	39607439	C	T	39607439	3	4	166	1	0	0	0	0	1	0	0	0	8308	826	29	3	2178	3	KIF6	6	39607439	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	7880806	39607439	131507628	54	21008											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	40360391	40360391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN2	NM_020737	exon3	c.T1661C	p.M554T	CGCACCATGAGGA	.	95	11	85	0	.	93	G	40360391	A	G	40360391	3	3	166	1	0	0	0	0	1	0	0	0	8938	217	8	2	712	2	LRFN2	6	40360391	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	752952	40360391	130754676	55	21009											
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47251729	47251729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TNFRSF21	NM_014452	exon3	c.A1188T	p.K396N	CATGGATTTCTTC	.	124	14	114	0	.	227	A	47251729	T	A	47251729	3	1	166	1	0	0	0	0	1	0	0	0	16292	1490	52	4	795	4	TNFRSF21	6	47251729	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	6891338	47251729	123863338	56	21010											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92731170	92731170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SAMD9	NM_001193307	exon2	c.A4241G	p.Q1414R	CGAAGCTGATCTT	.	120	17	146	0	.	140	C	92731170	T	C	92731170	3	2	166	1	0	0	0	0	1	0	0	0	13826	1580	55	2	532	2	SAMD9	7	92731170	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		92731170	66407493	57	21011											
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100192090	100192090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBXO24	NM_012172	exon6	c.A992G	p.K331R	TGAGGAAGGTGTC	.	127	15	110	0	.	229	G	100192090	A	G	100192090	3	3	166	1	0	0	0	0	1	0	0	0	5735	72	3	2	1057	2	FBXO24	7	100192090	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	7460920	100192090	58946573	58	21012											
LHFPL3	375612	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	103969504	103969504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_199000	exon1	c.A277G	p.S93G	AGGGGCAGCTTCA	.	63	7	73	1	.	.	G	103969504	A	G	103969504	3	3	166	1	0	0	0	0	1	0	0	0	8766	188	7	2	279	2	LHFPL3	7	103969504	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	3777414	103969504	55169159	59	21013											
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131195912	131195912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PODXL	NM_001018111	exon2	c.A381C	p.K127N	TGCACTTTTTGTG	.	288	45	213	0	.	136	G	131195912	T	G	131195912	3	3	166	1	0	0	0	0	1	0	0	0	12180	1838	64	5	1327	5	PODXL	7	131195912	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	27226408	131195912	27942751	60	21014											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138564336	138564336	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1549	NM_020910	exon12	c.T4293C	p.D1431D	CGTCTTATCTCCT	.	27	5	26	0	.	369	G	138564336	A	G	138564336	2	3	166	1	0	0	0	0	0	0	0	1	8244	446	16	2		2	KIAA1549	7	138564336	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	7368424	138564336	20574327	61	21015											
EFHA2	286097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16961997	16961997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFHA2	NM_181723	exon10	c.A1082G	p.Y361C	ATTTTTATAGGTG	.	64	16	63	1	.	91	G	16961997	A	G	16961997	3	3	166	1	0	0	0	0	1	0	0	0	4944	449	16	2	1120	2	EFHA2	8	16961997	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10		16961997	129402025	62	21016											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52339318	52339318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PXDNL	NM_144651	exon13	c.C1526G	p.A509G	GCAAGAGCTGTGG	.	53	9	33	0	.	70	C	52339318	G	C	52339318	3	2	166	1	0	0	0	0	1	0	0	0	12848	985	34	4	2909	4	PXDNL	8	52339318	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	35377321	52339318	94024704	63	21017											
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72234031	72234031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EYA1	NM_172059	exon5	c.A356G	p.Q119R	GCTTGTTGCATTC	.	335	38	288	0	.	652	C	72234031	T	C	72234031	3	2	166	1	0	0	0	0	1	0	0	0	5328	1812	63	2	1474	2	EYA1	8	72234031	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	19894713	72234031	74129991	64	21018											
ESRP1	54845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95676928	95676928	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ESRP1	NM_001122827	exon7	c.C648T	p.S216S	CAGCAGCAAGATG	.	190	18	137	0	.	94	T	95676928	C	T	95676928	2	4	166	1	0	0	0	0	0	0	0	1	5258	709	25	3		3	ESRP1	8	95676928	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	23442897	95676928	50687094	65	21019											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144892681	144892681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SCRIB	NM_015356	exon13	c.C1498G	p.P500A	AGTCTGGCTGGCA	.	151	20	109	0	.	228	C	144892681	G	C	144892681	3	2	166	1	0	0	0	0	1	0	0	0	13937	1203	42	4	3569	4	SCRIB	8	144892681	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	49215753	144892681	1471341	66	21020											
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17789515	17789515	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SH3GL2	NM_003026	exon6	c.T591A	p.A197A	AATTGCTGAGTCA	.	91	19	66	0	.	91	A	17789515	T	A	17789515	2	1	166	1	0	0	0	0	0	0	0	1	14251	1567	55	4		4	SH3GL2	9	17789515	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		17789515	123423916	67	21021											
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	71836182	71836182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TJP2	NM_001170416	exon5	c.G815A	p.R272H	GCAGCCGCGGCCG	.	72	6	58	0	.	115	A	71836182	G	A	71836182	3	1	166	1	0	0	0	0	1	0	0	0	15927	1087	38	1	897	1	TJP2	9	71836182	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	54046667	71836182	69377249	68	21022											
NOL8	55035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	95077366	95077366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NOL8	NM_017948	exon7	c.C1541T	p.T514I	TGGGTGGTGGTTT	.	84	8	99	0	.	23	A	95077366	G	A	95077366	3	1	166	1	0	0	0	0	1	0	0	0	10527	1261	44	3	2006	3	NOL8	9	95077366	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	23241184	95077366	46136065	69	21023											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128118132	128118132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GAPVD1	NM_015635	exon24	c.G4048A	p.D1350N	CTTCGCGACCAGT	.	221	35	214	0	.	93	A	128118132	G	A	128118132	3	1	166	1	0	0	0	0	1	0	0	0	6239	1058	37	1	4138	1	GAPVD1	9	128118132	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	33040766	128118132	13095299	70	21024											
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27356183	27356183	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ANKRD26	NM_014915	exon10	c.A1110G	p.K370K	ATTTTCTTTTTTT	.	25	4	45	0	.	138	C	27356183	T	C	27356183	2	2	166	1	0	0	0	0	0	0	0	1	654	1606	56	2		2	ANKRD26	10	27356183	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		27356183	108178564	71	21025											
ITGB1	3688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	33217025	33217025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ITGB1	NM_002211	exon5	c.A544C	p.I182L	TACCAATTCTGAA	.	55	4	65	0	.	1084	G	33217025	T	G	33217025	3	3	166	1	0	0	0	0	1	0	0	0	7890	1493	52	5	2138	5	ITGB1	10	33217025	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	5860842	33217025	102317722	72	21026											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55581783	55581783	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDH15	NM_001142763	exon35	c.T5724C	p.S1908S	TATTTGACTGTAC	.	71	8	98	0	.	193	G	55581783	A	G	55581783	2	3	166	1	0	0	0	0	0	0	0	1	11511	272	10	2		2	PCDH15	10	55581783	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	22364758	55581783	79952964	73	21027											
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88452294	88452294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LDB3	NM_001171610	exon8	c.C1066A	p.Q356K	ACAGTGCAAGACC	.	133	6	122	0	.	92	A	88452294	C	A	88452294	3	1	166	1	0	0	0	0	1	0	0	0	8697	711	25	3	1119	3	LDB3	10	88452294	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	32870511	88452294	47082453	74	21028											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6643111	6643111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCHS1	NM_003737	exon21	c.C9796T	p.P3266S	CAACGGGTGAGCG	.	126	14	102	0	.	73	A	6643111	G	A	6643111	3	1	166	1	0	0	0	0	1	0	0	0	4287	1261	44	3	104	3	DCHS1	11	6643111	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10		6643111	128363405	75	21029											
EXT2	2132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44255728	44255728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EXT2	NM_000401	exon12	c.A1969G	p.M657V	GCTCATATGAACT	.	195	31	160	0	.	524	G	44255728	A	G	44255728	3	3	166	1	0	0	0	0	1	0	0	0	5324	449	16	2	2112	2	EXT2	11	44255728	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	37612617	44255728	90750788	76	21030											
ALX4	60529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44289129	44289129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ALX4	NM_021926	exon3	c.G821A	p.R274H	CCAAAACGCTCCC	.	206	33	107	0	.	90	T	44289129	C	T	44289129	3	4	166	1	0	0	0	0	1	0	0	0	558	536	19	1	422	1	ALX4	11	44289129	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	33401	44289129	90717387	77	21031											
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47282864	47282864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NR1H3	NM_001251934	exon5	c.C590T	p.S197F	CCACATCCTTGCC	.	210	32	165	0	.	228	T	47282864	C	T	47282864	3	4	166	1	0	0	0	0	1	0	0	0	10618	855	30	3	586	3	NR1H3	11	47282864	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	2993735	47282864	87723652	78	21032											
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58602018	58602018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GLYATL2	NM_145016	exon6	c.T769G	p.Y257D	GGAAATAAAATGG	.	75	15	74	0	.	92	C	58602018	A	C	58602018	3	2	166	1	0	0	0	0	1	0	0	0	6481	362	13	5	119	5	GLYATL2	11	58602018	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	11319154	58602018	76404498	79	21033											
PLA2G16	11145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63365558	63365558	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G16	NM_001128203	exon3	c.A93G	p.G31G	CACATATCCATCG	.	271	42	268	0	.	91	C	63365558	T	C	63365558	2	2	166	1	0	0	0	0	0	0	0	1	11993	1422	50	2		2	PLA2G16	11	63365558	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	4763540	63365558	71640958	80	21034											
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49374980	49374980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WNT1	NM_005430	exon4	c.T670C	p.S224P	GGGATGTCCGGCT	.	242	28	189	0	.	1083	C	49374980	T	C	49374980	3	2	166	1	0	0	0	0	1	0	0	0	17378	1667	58	2	684	2	WNT1	12	49374980	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		49374980	84476915	81	21035											
OR6C68	403284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	55886941	55886941	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C68	NM_001005519	exon1	c.A780G	p.P260P	CAAGCCATCTGCA	.	76	15	109	0	.	69	G	55886941	A	G	55886941	2	3	166	1	0	0	0	0	0	0	0	1	11196	204	8	2		2	OR6C68	12	55886941	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	6511961	55886941	77964954	82	21036											
OR6C4	341418	hgsc.bcm.edu;broad.mit.edu	37	12	55945800	55945800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C4	NM_001005494	exon1	c.G790T	p.E264X	GCAAAAGAAGGAG	.	85	6	104	0	.	68	T	55945800	G	T	55945800	4	4	166	1	0	0	0	0	0	1	0	0	11193	943	33	3	792	3	OR6C4	12	55945800	Nonsense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	58859	55945800	77906095	83	21037											
DCTN2	10540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57929270	57929270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCTN2	NM_001261412	exon4	c.G267T	p.E89D	AACCATCTCATAT	.	87	11	82	0	.	23	A	57929270	C	A	57929270	3	1	166	1	0	0	0	0	1	0	0	0	4307	912	32	3	988	3	DCTN2	12	57929270	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	1983470	57929270	75922625	84	21038											
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	12	58121178	58121178	+	Silent	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AGAP2	NM_001122772	exon17	c.G3045C	p.T1015T	GCCTCGCGTGTCG	.	138	27	107	1	.	716	G	58121178	C	G	58121178	2	3	166	1	0	0	0	0	0	0	0	1	368	755	27	4		4	AGAP2	12	58121178	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	191908	58121178	75730717	85	21039											
TSPAN31	6302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	58141073	58141073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TSPAN31	NM_005981	exon6	c.A633G	p.X211W	TCTATGAGACTTT	.	68	7	59	0	.	446	G	58141073	A	G	58141073	3	3	166	1	0	0	0	0	1	0	0	0	16643	317	11	2	655	2	TSPAN31	12	58141073	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	19895	58141073	75710822	86	21040											
NAV3	89795	broad.mit.edu;ucsc.edu	37	12	78452777	78452777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NAV3	NM_014903	exon12	c.T2518C	p.Y840H	TTCAGGTACATGA	.	57	8	60	1	.	279	C	78452777	T	C	78452777	3	2	166	1	0	0	0	0	1	0	0	0	10185	1652	57	2	2564	2	NAV3	12	78452777	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	20311704	78452777	55399118	87	21041											
C12orf74	338809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93100546	93100546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C12orf74	NM_001037671	exon2	c.A139T	p.T47S	ATCTCCACCTCGC	.	113	15	109	0	.	90	T	93100546	A	T	93100546	3	4	166	1	0	0	0	0	1	0	0	0	1714	159	6	4	141	4	C12orf74	12	93100546	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	14647769	93100546	40751349	88	21042											
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109283310	109283310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DAO	NM_001917	exon4	c.C375A	p.F125L	TATGTTCCCAGAT	.	125	11	97	0	.	92	A	109283310	C	A	109283310	3	1	166	1	0	0	0	0	1	0	0	0	4231	854	30	3	385	3	DAO	12	109283310	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	16182764	109283310	24568585	89	21043											
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122396358	122396358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR66	NM_001178003	exon12	c.C1911A	p.N637K	TGAAAACAAACAA	.	139	17	111	0	.	92	A	122396358	C	A	122396358	3	1	166	1	0	0	0	0	1	0	0	0	17314	477	17	3	1953	3	WDR66	12	122396358	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	13113048	122396358	11455537	90	21044											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124402197	124402197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH10	NM_207437	exon63	c.A10715G	p.E3572G	AGCTGGAGGAGCA	.	166	28	110	0	.	95	G	124402197	A	G	124402197	3	3	166	1	0	0	0	0	1	0	0	0	4598	304	11	2	10965	2	DNAH10	12	124402197	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	2005839	124402197	9449698	91	21045											
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	88328465	88328465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLITRK5	NM_015567	exon2	c.C822A	p.D274E	AAGGGACTTGGAC	.	121	17	93	0	.	94	A	88328465	C	A	88328465	3	1	166	1	0	0	0	0	1	0	0	0	14746	564	20	3	824	3	SLITRK5	13	88328465	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10		88328465	26841413	92	21046											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356745	42356745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN5	NM_152447	exon3	c.T917C	p.L306P	CAACACTGAGGTG	.	121	15	130	0	.	97	C	42356745	T	C	42356745	3	2	166	1	0	0	0	0	1	0	0	0	8941	1580	55	2	919	2	LRFN5	14	42356745	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		42356745	64992795	93	21047											
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75245225	75245225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	YLPM1	NM_019589	exon2	c.A949G	p.K317E	GGACACAAAAAGG	.	235	43	242	0	.	71	G	75245225	A	G	75245225	3	3	166	1	0	0	0	0	1	0	0	0	17483	131	5	2	955	2	YLPM1	14	75245225	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	32888480	75245225	32104315	94	21048											
NEK9	91754	hgsc.bcm.edu;bcgsc.ca	37	14	75567697	75567697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NEK9	NM_033116	exon16	c.A2000C	p.D667A	TCACCATCAGTGG	.	60	5	80	0	.	359	G	75567697	T	G	75567697	3	3	166	1	0	0	0	0	1	0	0	0	10331	1435	50	5	967	5	NEK9	14	75567697	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	322472	75567697	31781843	95	21049											
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90730490	90730490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMC1	NM_002802	exon6	c.G571A	p.D191N	GGGTTGGACAACC	.	86	12	91	0	.	90	A	90730490	G	A	90730490	3	1	166	1	0	0	0	0	1	0	0	0	12685	1174	41	3	593	3	PSMC1	14	90730490	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	15162793	90730490	16619050	96	21050											
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40031879	40031879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FSIP1	NM_152597	exon7	c.A767G	p.K256R	TTTCTCTTAATAA	.	25	6	30	0	.	517	C	40031879	T	C	40031879	3	2	166	1	0	0	0	0	1	0	0	0	6074	1609	56	2	1002	2	FSIP1	15	40031879	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		40031879	62499513	97	21051											
TCF12	6938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57212181	57212181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TCF12	NM_207036	exon2	c.A70G	p.S24G	GACTTCAGTGCGG	.	143	20	149	0	.	1085	G	57212181	A	G	57212181	3	3	166	1	0	0	0	0	1	0	0	0	15684	188	7	2	72	2	TCF12	15	57212181	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	17180302	57212181	45319211	98	21052											
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85327447	85327447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF592	NM_014630	exon4	c.G1541C	p.S514T	CCCACAGTGTTGC	.	196	33	154	0	.	96	C	85327447	G	C	85327447	3	2	166	1	0	0	0	0	1	0	0	0	18019	1029	36	4	1543	4	ZNF592	15	85327447	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	28115266	85327447	17203945	99	21053											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1254427	1254427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CACNA1H	NM_021098	exon10	c.C2420T	p.T807M	TCAACACGCTGAG	.	307	59	192	0	.	67	T	1254427	C	T	1254427	3	4	166	1	0	0	0	0	1	0	0	0	2545	536	19	1	2454	1	CACNA1H	16	1254427	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10		1254427	89100326	100	21054											
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3298983	3298983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MEFV	NM_000243	exon4	c.G1282A	p.E428K	GATGCTCCAGCTG	.	72	17	55	0	.	228	T	3298983	C	T	3298983	3	4	166	1	0	0	0	0	1	0	0	0	9459	864	30	3	1091	3	MEFV	16	3298983	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	2044556	3298983	87055770	101	21055											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20981196	20981196	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH3	NM_017539	exon52	c.A8376G	p.P2792P	AGGGCCTGGTGGG	.	143	26	109	0	.	167	C	20981196	T	C	20981196	2	2	166	1	0	0	0	0	0	0	0	1	4603	1567	55	2		2	DNAH3	16	20981196	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	17682213	20981196	69373557	102	21056											
PHKG2	5261	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30760208	30760208	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PHKG2	NM_001172432	exon2	c.A67T	p.K23X	TACCAGAAGTACG	.	214	33	186	0	.	334	T	30760208	A	T	30760208	4	4	166	1	0	0	0	0	0	1	0	0	11847	247	9	4	69	4	PHKG2	16	30760208	Nonsense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	9779012	30760208	59594545	103	21057											
SLC12A3	6559	broad.mit.edu;ucsc.edu	37	16	56920369	56920369	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC12A3	NM_001126108	exon16	c.C2019A	p.I673I	GATGATCTGTGGC	.	89	12	61	1	.	155	A	56920369	C	A	56920369	2	1	166	1	0	0	0	0	0	0	0	1	14384	903	32	3		3	SLC12A3	16	56920369	Silent	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	26160161	56920369	33434384	104	21058											
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67655390	67655390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CTCF	NM_006565	exon7	c.A1253G	p.Q418R	TTACCCAAAGTGG	.	122	18	118	0	.	91	G	67655390	A	G	67655390	3	3	166	1	0	0	0	0	1	0	0	0	4000	130	5	2	1271	2	CTCF	16	67655390	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	10735021	67655390	22699363	105	21059											
SLC43A2	124935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1480000	1480000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC43A2	NM_152346	exon13	c.A1439T	p.Q480L	CCGAACTGGGTGG	.	78	18	63	1	.	91	A	1480000	T	A	1480000	3	1	166	1	0	0	0	0	1	0	0	0	14633	1580	55	4	278	4	SLC43A2	17	1480000	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		1480000	79715210	106	21060											
C17orf49	124944	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6920313	6920313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C17orf49	NM_174893	exon5	c.A494C	p.K165T	CAGCTAAGAAACT	.	53	7	63	2	.	135	C	6920313	A	C	6920313	3	2	166	1	0	0	0	0	1	0	0	0	1860	72	3	5	512	5	C17orf49	17	6920313	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	5440313	6920313	74274897	107	21061											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7576928	7576928	+	Splice_Site	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	TP53,NS,carcinoma,0	TP53	NM_000546	exon10	c.920-2A>G	.	CAGTGCTAGGAAA	.	193	38	173	1	.	70225	C	7576928	T	C	7576928	5	2	166	1	0	0	0	0	0	0	1	0	16378	1536	53	2	364	2	TP53	17	7576928	Splice_Site	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	656615	7576928	73618282	108	21062											
PIP4K2B	8396	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	36955561	36955561	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIP4K2B	NM_003559	exon1	c.C117T	p.S39S	CGGCTCGCTGGCC	.	74	17	58	0	.	266	A	36955561	G	A	36955561	2	1	166	1	0	0	0	0	0	0	0	1	11937	1078	38	1		1	PIP4K2B	17	36955561	Silent	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	29378633	36955561	44239649	109	21063											
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46685442	46685442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HOXB7	NM_004502	exon2	c.G416A	p.R139Q	CGGCCTCGTTTGC	.	85	10	74	0	.	90	T	46685442	C	T	46685442	3	4	166	1	0	0	0	0	1	0	0	0	7306	884	31	1	241	1	HOXB7	17	46685442	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	9729881	46685442	34509768	110	21064											
IGF2BP1	10642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47119724	47119724	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGF2BP1	NM_006546	exon9	c.T1062C	p.D354D	GAATGATGTGGCT	.	249	46	227	2	.	226	C	47119724	T	C	47119724	2	2	166	1	0	0	0	0	0	0	0	1	7573	1461	51	2		2	IGF2BP1	17	47119724	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	434282	47119724	34075486	111	21065											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	71334929	71334929	+	Missense_Mutation	SNP	C	C	T	rs199923333		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SDK2	NM_001144952	exon45	c.G6316A	p.D2106N	CCGAGTCGCTCTC	.	281	22	227	0	C|0.999;T|0.000	24	T	71334929	C	T	71334929	3	4	166	1	0	0	0	0	1	0	0	0	13969	884	31	1	206	1	SDK2	17	71334929	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	24215205	71334929	9860281	112	21066											
STARD6	147323	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	51851176	51851176	+	Silent	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	STARD6	NM_139171	exon6	c.A549C	p.I183I	TTCAATTATTGAT	.	118	10	111	0	.	91	G	51851176	T	G	51851176	2	3	166	1	0	0	0	0	0	0	0	1	15260	1744	61	5		5	STARD6	18	51851176	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10		51851176	26226072	113	21067											
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7807945	7807945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CD209	NM_021155	exon7	c.C1195A	p.P399T	GGTTTGGGGTGGC	.	61	11	66	0	.	91	T	7807945	G	T	7807945	3	4	166	1	0	0	0	0	1	0	0	0	2984	1232	43	3	23	3	CD209	19	7807945	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10		7807945	51321038	114	21068											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9073366	9073366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC16	NM_024690	exon3	c.C14080T	p.L4694F	AGGCAAGTGGAAT	.	188	37	187	0	.	566	A	9073366	G	A	9073366	3	1	166	1	0	0	0	0	1	0	0	0	9973	1029	36	3	29771	3	MUC16	19	9073366	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	1265421	9073366	50055617	115	21069											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602442	10602442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KEAP1	NM_012289	exon3	c.G1136T	p.G379V	TTCCTGCCGCCCA	.	112	14	75	0	.	637	A	10602442	C	A	10602442	3	1	166	1	0	0	0	0	1	0	0	0	8141	739	26	3	754	3	KEAP1	19	10602442	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	1529076	10602442	48526541	116	21070											
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14865791	14865791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EMR2	NM_013447	exon14	c.T1565C	p.V522A	ATGAGGACGGCAA	.	221	33	182	1	.	524	G	14865791	A	G	14865791	3	3	166	1	0	0	0	0	1	0	0	0	5105	275	10	2	938	2	EMR2	19	14865791	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	4263349	14865791	44263192	117	21071											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18279669	18279669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIK3R2	NM_005027	exon15	c.G1942T	p.E648X	ATCCGCGAGAGCA	.	217	30	165	0	.	1311	T	18279669	G	T	18279669	4	4	166	1	0	0	0	0	0	1	0	0	11919	1059	37	1	1996	1	PIK3R2	19	18279669	Nonsense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	3413878	18279669	40849314	118	21072											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31040266	31040266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF536	NM_014717	exon4	c.G3740T	p.G1247V	TGGCGGGCCTGCC	.	85	17	81	0	.	144	T	31040266	G	T	31040266	3	4	166	1	0	0	0	0	1	0	0	0	17971	1203	42	3	3750	3	ZNF536	19	31040266	Missense_Mutation	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	12760597	31040266	28088717	119	21073											
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36048727	36048727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP4A	NM_000704	exon11	c.A1523T	p.D508V	CGCGGGTCCTCCA	.	120	15	87	0	.	91	A	36048727	T	A	36048727	3	1	166	1	0	0	0	0	1	0	0	0	1145	1667	58	4	1632	4	ATP4A	19	36048727	Missense_Mutation	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	5008461	36048727	23080256	120	21074											
NFKBID	84807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36387302	36387302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NFKBID	NM_139239	exon7	c.G397A	p.V133I	AGAGAACTCCTGG	.	106	9	82	0	.	90	T	36387302	C	T	36387302	3	4	166	1	0	0	0	0	1	0	0	0	10379	565	20	3	568	3	NFKBID	19	36387302	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	338575	36387302	22741681	121	21075											
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37310227	37310227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF790	NM_206894	exon5	c.G1019C	p.C340S	TCCTTACATTCAT	.	77	14	79	0	.	92	G	37310227	C	G	37310227	3	3	166	1	0	0	0	0	1	0	0	0	18159	478	17	4	895	4	ZNF790	19	37310227	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	922925	37310227	21818756	122	21076											
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520371	40520371	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF546	NM_178544	exon7	c.A1194T	p.S398S	TGGCTCATACCTT	.	80	13	101	0	.	155	T	40520371	A	T	40520371	2	4	166	1	0	0	0	0	0	0	0	1	17975	204	8	4		4	ZNF546	19	40520371	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	3210144	40520371	18608612	123	21077											
EHD2	30846	broad.mit.edu;mdanderson.org	37	19	48229309	48229309	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EHD2	NM_014601	exon4	c.A743T	p.E248V	CGCCCGAGGTGCT	.	52	8	51	0	.	92	T	48229309	A	T	48229309	3	4	166	1	0	0	0	0	1	0	0	0	4978	304	11	4	753	4	EHD2	19	48229309	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	7708938	48229309	10899674	124	21078											
OSCAR	126014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54600387	54600387	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OSCAR	NM_130771	exon4	c.T147A	p.P49P	GACCCCAGGGGTC	.	93	16	95	0	.	68	T	54600387	A	T	54600387	2	4	166	1	0	0	0	0	0	0	0	1	11285	175	7	4		4	OSCAR	19	54600387	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	6371078	54600387	4528596	125	21079											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	10644621	10644621	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JAG1	NM_000214	exon3	c.T429C	p.N143N	GGTGTCATTACTG	.	193	17	164	0	.	1273	G	10644621	A	G	10644621	2	3	166	1	0	0	0	0	0	0	0	1	7934	214	8	2		2	JAG1	20	10644621	Silent	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10		10644621	52380899	126	21080											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	40980734	40980734	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PTPRT	NM_007050	exon10	c.C1752A	p.T584T	AATTTTGGTGGCA	.	139	10	102	0	.	664	T	40980734	G	T	40980734	2	4	166	1	0	0	0	0	0	0	0	1	12812	1335	47	3		3	PTPRT	20	40980734	Silent	SNP	G	TCGA-K7-A5RG-01A-11D-A28X-10	30336113	40980734	22044786	127	21081											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56139664	56139664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCK1	NM_002591	exon8	c.C1313T	p.P438L	GTAGACCTGCTGG	.	40	7	30	0	.	227	T	56139664	C	T	56139664	3	4	166	1	0	0	0	0	1	0	0	0	11581	681	24	3	1339	3	PCK1	20	56139664	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	15158930	56139664	6885856	128	21082											
ASCC2	84164	broad.mit.edu;bcgsc.ca	37	22	30202864	30202865	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	GA	GA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASCC2	NM_032204	exon10	c.937_938del	p.313_313del	GAATGGGAGAGCC	.	63	8	87	0	.	90	-	30202865	GA	-	30202864	7	5	166	1	0	1	0	1	0	0	0	0	1032	1174	41	0	1379	0	ASCC2	22	30202864	Frame_Shift_Del	DEL	GA	TCGA-K7-A5RG-01A-11D-A28X-10		30202864	21101702	129	21083											
RANGAP1	5905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41652812	41652812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RANGAP1	NM_002883	exon8	c.G791A	p.R264Q	ACCTGCCGCAAGG	.	74	10	64	0	.	90	T	41652812	C	T	41652812	3	4	166	1	0	0	0	0	1	0	0	0	13033	652	23	1	1008	1	RANGAP1	22	41652812	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10	11449948	41652812	9651754	130	21084											
IL1RAPL1	11141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	29973747	29973747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL1	NM_014271	exon11	c.C1901T	p.P634L	TACCTCCTACCGG	.	118	32	77	0	.	134	T	29973747	C	T	29973747	3	4	166	1	0	0	0	0	1	0	0	0	7661	681	24	3	1939	3	IL1RAPL1	23	29973747	Missense_Mutation	SNP	C	TCGA-K7-A5RG-01A-11D-A28X-10		29973747	125296813	131	21085											
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104999216	104999216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL2	NM_017416	exon10	c.A1238G	p.Q413R	TGGACCAAGATAC	.	169	40	144	0	.	194	G	104999216	A	G	104999216	3	3	166	1	0	0	0	0	1	0	0	0	7662	130	5	2	1272	2	IL1RAPL2	23	104999216	Missense_Mutation	SNP	A	TCGA-K7-A5RG-01A-11D-A28X-10	75025469	104999216	50271344	132	21086											
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135431901	135431901	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GPR112	NM_153834	exon6	c.T6036A	p.S2012S	CTTATCTAGTCTC	.	79	22	65	1	.	183	A	135431901	T	A	135431901	2	1	166	1	0	0	0	0	0	0	0	1	6629	1509	53	4		4	GPR112	23	135431901	Silent	SNP	T	TCGA-K7-A5RG-01A-11D-A28X-10	30432685	135431901	19838659	133	21087											
EPHA2	1969	broad.mit.edu;mdanderson.org	37	1	16464616	16464616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EPHA2	NM_004431	exon5	c.G1044A	p.W348X	GGGCGTCCAGCGC	.	15	4	20	0	.	1419	T	16464616	C	T	16464616	4	4	167	1	0	0	0	0	0	1	0	0	5167	856	30	3	1938	3	EPHA2	1	16464616	Nonsense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		16464616	232786005	1	21088											
PADI1	29943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17565194	17565194	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PADI1	NM_013358	exon13	c.C1542T	p.A514A	GGCAGCCCAGTTT	.	55	18	120	0	.	68	T	17565194	C	T	17565194	2	4	167	1	0	0	0	0	0	0	0	1	11377	610	22	3		3	PADI1	1	17565194	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	1100578	17565194	231685427	2	21089											
ZNF362	149076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33760792	33760792	+	Silent	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF362	NM_152493	exon8	c.C1032G	p.P344P	GTGTCCCAACTGC	.	171	40	226	1	.	68	G	33760792	C	G	33760792	2	3	167	1	0	0	0	0	0	0	0	1	17865	581	21	4		4	ZNF362	1	33760792	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	16195598	33760792	215489829	3	21090											
TFAP2E	339488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36060160	36060160	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TFAP2E	NM_178548	exon7	c.C1212T	p.A404A	CACTGCCTTCCAG	.	44	10	73	0	.	90	T	36060160	C	T	36060160	2	4	167	1	0	0	0	0	0	0	0	1	15788	668	24	3		3	TFAP2E	1	36060160	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	2299368	36060160	213190461	4	21091											
VPS72	6944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151158055	151158055	+	Silent	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VPS72	NM_001271087	exon3	c.G312T	p.P104P	ACCAGCCGGGGTG	.	139	36	97	0	.	154	A	151158055	C	A	151158055	2	1	167	1	0	0	0	0	0	0	0	1	17214	639	23	1		1	VPS72	1	151158055	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	115097895	151158055	98092566	5	21092											
SPRR1B	6699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153004986	153004986	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SPRR1B	NM_003125	exon2	c.G165A	p.E55E	GCCCGAGCCCTGC	.	66	9	86	0	.	69	A	153004986	G	A	153004986	2	1	167	1	0	0	0	0	0	0	0	1	15095	962	34	3		3	SPRR1B	1	153004986	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	1846931	153004986	96245635	6	21093											
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183101589	183101589	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LAMC1	NM_002293	exon21	c.G3621A	p.T1207T	TGATACGTCAACT	.	101	37	103	1	.	252	A	183101589	G	A	183101589	2	1	167	1	0	0	0	0	0	0	0	1	8614	1132	40	1		1	LAMC1	1	183101589	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	30096603	183101589	66149032	7	21094											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1499804	1499804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	TPO,NS,carcinoma,0	TPO	NM_001206744	exon12	c.C2050T	p.R684C	CAGAGGCGTGAGC	.	36	12	32	0	.	332	T	1499804	C	T	1499804	3	4	167	1	0	0	0	0	1	0	0	0	16407	768	27	1	2092	1	TPO	2	1499804	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		1499804	241699569	8	21095											
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25965885	25965885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ASXL2	NM_018263	exon12	c.G3321T	p.M1107I	ACCCAGCATGAAC	.	57	13	35	0	.	23	A	25965885	C	A	25965885	3	1	167	1	0	0	0	0	1	0	0	0	1067	710	25	3	990	3	ASXL2	2	25965885	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	24466081	25965885	217233488	9	21096											
NFU1	27247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69650764	69650764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NFU1	NM_001002755	exon3	c.G252T	p.R84S	CATGGTCCTTGTC	.	90	25	98	0	.	90	A	69650764	C	A	69650764	3	1	167	1	0	0	0	0	1	0	0	0	10386	854	30	3	536	3	NFU1	2	69650764	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	43684879	69650764	173548609	10	21097											
CYP26B1	56603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	72374800	72374800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CYP26B1	NM_019885	exon1	c.G164T	p.G55V	GGGAAGCCCATGG	.	49	11	63	0	.	92	A	72374800	C	A	72374800	3	1	167	1	0	0	0	0	1	0	0	0	4156	739	26	3	1398	3	CYP26B1	2	72374800	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	2724036	72374800	170824573	11	21098											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	166229735	166229735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SCN2A	NM_001040143	exon20	c.G3850C	p.V1284L	GTATAGGTCTCAC	.	96	21	102	0	.	142	C	166229735	G	C	166229735	3	2	167	1	0	0	0	0	1	0	0	0	13916	1275	44	4	4024	4	SCN2A	2	166229735	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	93854935	166229735	76969638	12	21099											
PPIG	9360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170460700	170460700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PPIG	NM_004792	exon4	c.G65T	p.G22V	CAGCTGGAAGAGT	.	70	26	89	0	.	92	T	170460700	G	T	170460700	3	4	167	1	0	0	0	0	1	0	0	0	12324	1174	41	3	71	3	PPIG	2	170460700	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	4230965	170460700	72738673	13	21100											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179439946	179439946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TTN	NM_001267550	exon326	c.T70913G	p.I23638S	TGATAGATGCCAC	.	53	15	77	0	.	636	C	179439946	A	C	179439946	3	2	167	1	0	0	0	0	1	0	0	0	16732	333	12	5	37214	5	TTN	2	179439946	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	8979246	179439946	63759427	14	21101											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800549	185800549	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF804A	NM_194250	exon4	c.T426C	p.V142V	AACTGTTACTGTG	.	66	19	70	0	.	163	C	185800549	T	C	185800549	2	2	167	1	0	0	0	0	0	0	0	1	18167	1741	61	2		2	ZNF804A	2	185800549	Silent	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	6360603	185800549	57398824	15	21102											
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189907465	189907465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	COL5A2	NM_000393	exon49	c.C3506G	p.P1169R	GGTCCAGGGATTC	.	42	17	46	0	.	92	C	189907465	G	C	189907465	3	2	167	1	0	0	0	0	1	0	0	0	3697	1000	35	4	1017	4	COL5A2	2	189907465	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	4106916	189907465	53291908	16	21103											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004C	p.K335T	ACGAAAAACTACT	.	111	24	94	0	.	24361	C	41268766	A	C	41268766	3	2	167	1	0	0	0	0	1	0	0	0	4016	14	1	5	1026	5	CTNNB1	3	41268766	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10		41268766	156753664	17	21104											
HIGD1A	25994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42826810	42826810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HIGD1A	NM_001099668	exon4	c.A277G	p.M93V	AGCCCATACCTAA	.	538	108	648	0	.	226	C	42826810	T	C	42826810	3	2	167	1	0	0	0	0	1	0	0	0	7106	1406	49	2	50	2	HIGD1A	3	42826810	Missense_Mutation	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	1558044	42826810	155195620	18	21105											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47162395	47162395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SETD2	NM_014159	exon3	c.C3731T	p.P1244L	ACATGTGGTATCT	.	71	7	79	0	.	1273	A	47162395	G	A	47162395	3	1	167	1	0	0	0	0	1	0	0	0	14131	1348	47	3	4039	3	SETD2	3	47162395	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	4335585	47162395	150860035	19	21106											
TFG	10342	broad.mit.edu;mdanderson.org	37	3	100467366	100467366	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TFG	NM_006070	exon8	c.T1194G	p.G398G	ACCTGGTTATCGA	.	23	6	32	0	.	861	G	100467366	T	G	100467366	2	3	167	1	0	0	0	0	0	0	0	1	15803	1712	60	5		5	TFG	3	100467366	Silent	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	53304971	100467366	97555064	20	21107											
CBLB	868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	105586253	105586253	+	Splice_Site	DEL	C	C	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CBLB	NM_170662	exon3	c.168+1G>-	.	AACTTACCACTTT	.	56	19	68	0	.	849	-	105586253	C	-	105586253	8	5	167	1	0	1	0	1	0	0	1	0	2701	521	18	0	2851	0	CBLB	3	105586253	Splice_Site	DEL	C	TCGA-K7-A6G5-01A-11D-A30V-10	5118887	105586253	92436177	21	21108											
SOX2	6657	ucsc.edu;mdanderson.org	37	3	181431520	181431520	+	RNA	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SOX2	.	.	.	.	TAATATTTAGAGC	.	198	61	251	0	.	650	G	181431520	T	G	181431520	1	3	167	0	1	0	0	0	0	0	0	0	14949	1856	64	5		5	SOX2	3	181431520	RNA	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	75845267	181431520	16590910	22	21109											
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6863165	6863165	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KIAA0232	NM_014743	exon7	c.C1056T	p.S352S	TAGTAGCAGTAGC	.	88	21	107	0	.	92	T	6863165	C	T	6863165	2	4	167	1	0	0	0	0	0	0	0	1	8163	709	25	3		3	KIAA0232	4	6863165	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		6863165	184291111	23	21110											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ALB	NM_000477	exon11	c.1428_1428del	p.476_476del	AGACTATGTGAGT	.	68	23	111	0	.	96	-	74283387	TG	-	74283386	7	5	167	1	0	1	0	1	0	0	0	0	486	1478	51	0	1470	0	ALB	4	74283386	Frame_Shift_Del	DEL	TG	TCGA-K7-A6G5-01A-11D-A30V-10	67420221	74283386	116870890	24	21111											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74285295	74285296	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ALB	NM_000477	exon13	c.1724_1725insC	p.F575fs	ATGATTTCGCAGC	.	62	18	51	0	.	96	C	74285296	-	C	74285295	7	5	167	1	0	1	1	0	0	0	0	0	486	1783	62	0	1774	0	ALB	4	74285295	Frame_Shift_Ins	INS	-	TCGA-K7-A6G5-01A-11D-A30V-10	1909	74285295	116868981	25	21112											
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96052422	96052422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	BMPR1B	NM_001256793	exon8	c.A925G	p.T309A	CTAATCACAGACT	.	132	33	162	0	.	1378	G	96052422	A	G	96052422	3	3	167	1	0	0	0	0	1	0	0	0	1470	159	6	2	861	2	BMPR1B	4	96052422	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	21767127	96052422	95101854	26	21113											
EIF4E	1977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99850252	99850252	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EIF4E	NM_001130679	exon1	c.C12T	p.V4V	CGGTTCGACAGTC	.	46	12	54	0	.	1270	A	99850252	G	A	99850252	2	1	167	1	0	0	0	0	0	0	0	1	5028	1045	37	1		1	EIF4E	4	99850252	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	3797830	99850252	91304024	27	21114											
C4orf17	84103	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100463066	100463066	+	Splice_Site	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C4orf17	NM_032149	exon9	c.881-1G>C	.	ATTTCAGAGGCTG	.	176	10	232	0	.	90	C	100463066	G	C	100463066	5	2	167	1	0	0	0	0	0	0	1	0	2252	956	33	4	910	4	C4orf17	4	100463066	Splice_Site	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	612814	100463066	90691210	28	21115											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071449	134071449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PCDH10	NM_032961	exon1	c.G154A	p.G52R	GCTCGCGGGTTTC	.	79	19	94	0	.	92	A	134071449	G	A	134071449	3	1	167	1	0	0	0	0	1	0	0	0	11507	1116	39	1	156	1	PCDH10	4	134071449	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	33608383	134071449	57082827	29	21116											
PRDM9	56979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23526529	23526529	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRDM9	NM_020227	exon11	c.A1332G	p.P444P	AGATCCACACAGC	.	87	25	115	1	.	139	G	23526529	A	G	23526529	2	3	167	1	0	0	0	0	0	0	0	1	12463	146	6	2		2	PRDM9	5	23526529	Silent	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10		23526529	157388731	30	21117											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123979216	123979216	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	ZNF608,NS,carcinoma,-1	ZNF608	NM_020747	exon6	c.C4284T	p.S1428S	AGACTTGCTGCGG	.	110	27	119	0	.	229	A	123979216	G	A	123979216	2	1	167	1	0	0	0	0	0	0	0	1	18031	1310	46	3		3	ZNF608	5	123979216	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	100452687	123979216	56936044	31	21118											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140214367	140214367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PCDHA7	NM_031852	exon1	c.399delC	p.F133fs	GGTGTTCCCAGCG	.	328	94	405	0	.	94	-	140214367	C	-	140214367	7	5	167	1	0	1	0	1	0	0	0	0	11529	854	30	0	401	0	PCDHA7	5	140214367	Frame_Shift_Del	DEL	C	TCGA-K7-A6G5-01A-11D-A30V-10	16235151	140214367	40700893	32	21119											
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148725167	148725167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GRPEL2	NM_152407	exon1	c.C65G	p.A22G	GTGCCGCGTGGGA	.	91	18	133	0	.	91	G	148725167	C	G	148725167	3	3	167	1	0	0	0	0	1	0	0	0	6807	768	27	4	67	4	GRPEL2	5	148725167	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	8510800	148725167	32190093	33	21120											
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44147887	44147887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CAPN11	NM_007058	exon14	c.C1627A	p.H543N	GAGAAGCACAGCG	.	31	8	37	0	.	136	A	44147887	C	A	44147887	3	1	167	1	0	0	0	0	1	0	0	0	2624	710	25	3	1681	3	CAPN11	6	44147887	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		44147887	126967180	34	21121											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65149117	65149117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EYS	NM_001142800	exon27	c.C5773A	p.Q1925K	AGTCTTGCTTGAC	.	90	16	146	0	.	660	T	65149117	G	T	65149117	3	4	167	1	0	0	0	0	1	0	0	0	5332	1328	46	3	3574	3	EYS	6	65149117	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	21001230	65149117	105965950	35	21122											
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73843259	73843259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KCNQ5	NM_001160133	exon11	c.G1420A	p.E474K	ACAGCCGAGGGCA	.	48	12	92	0	.	158	A	73843259	G	A	73843259	3	1	167	1	0	0	0	0	1	0	0	0	8086	1059	37	1	1462	1	KCNQ5	6	73843259	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	8694142	73843259	97271808	36	21123											
PNLDC1	154197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160237044	160237044	+	Missense_Mutation	SNP	G	G	T	rs137878641	byfrequency;alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PNLDC1	NM_173516	exon13	c.G1006T	p.A336S	GTTCACGCGAGCA	.	41	11	47	0	G|0.999;A|0.001	90	T	160237044	G	T	160237044	3	4	167	1	0	0	0	0	1	0	0	0	12148	1087	38	1	1052	1	PNLDC1	6	160237044	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	86393785	160237044	10878023	37	21124											
NPTX2	4885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98257930	98257930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NPTX2	NM_002523	exon5	c.C1285T	p.L429F	CGTCTCCTTGACT	.	50	12	64	0	.	515	T	98257930	C	T	98257930	3	4	167	1	0	0	0	0	1	0	0	0	10603	681	24	3	1303	3	NPTX2	7	98257930	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		98257930	60880733	38	21125											
WNT2	7472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	116960721	116960721	+	Silent	SNP	G	G	A	rs139486726		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	WNT2	NM_003391	exon2	c.C210T	p.A70A	CCACTCGGCCACG	.	50	13	36	0	G|1.000;A|0.000	1011	A	116960721	G	A	116960721	2	1	167	1	0	0	0	0	0	0	0	1	17383	1103	39	1		1	WNT2	7	116960721	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	18702791	116960721	42177942	39	21126											
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144695934	144695934	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TSTA3	NM_003313	exon8	c.C717T	p.P239P	GATGATGGGCTCC	.	122	43	70	0	.	91	A	144695934	G	A	144695934	2	1	167	1	0	0	0	0	0	0	0	1	16671	1335	47	3		3	TSTA3	8	144695934	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		144695934	1668088	40	21127											
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33465828	33465828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NOL6	NM_022917	exon19	c.G2432A	p.S811N	TCTGGGCTCTGCA	.	41	12	45	0	.	92	T	33465828	C	T	33465828	3	4	167	1	0	0	0	0	1	0	0	0	10525	797	28	3	1040	3	NOL6	9	33465828	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		33465828	107747603	41	21128											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320343	79320343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRUNE2	NM_015225	exon8	c.G6847A	p.D2283N	AAGCATCAGGAAC	.	90	16	93	0	.	157	T	79320343	C	T	79320343	3	4	167	1	0	0	0	0	1	0	0	0	12641	826	29	3	2467	3	PRUNE2	9	79320343	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	45854515	79320343	61893088	42	21129											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133942439	133942439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	LAMC3,NS,carcinoma,0	LAMC3	NM_006059	exon14	c.G2440A	p.G814R	TGTAGCGGGAACG	.	26	10	42	0	.	93	A	133942439	G	A	133942439	3	1	167	1	0	0	0	0	1	0	0	0	8616	1116	39	1	2494	1	LAMC3	9	133942439	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	54622096	133942439	7270992	43	21130											
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139405212	139405212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NOTCH1	NM_017617	exon17	c.G2633A	p.C878Y	TGCCGGCACGGGC	.	38	17	73	0	.	5459	T	139405212	C	T	139405212	3	4	167	1	0	0	0	0	1	0	0	0	10547	710	25	3	5106	3	NOTCH1	9	139405212	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	5462773	139405212	1808219	44	21131											
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6498670	6498670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRKCQ	NM_006257	exon15	c.C1613A	p.T538N	CAGAAGGTATTCG	.	72	16	50	0	.	1380	T	6498670	G	T	6498670	3	4	167	1	0	0	0	0	1	0	0	0	12515	1261	44	3	523	3	PRKCQ	10	6498670	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		6498670	129036077	45	21132											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24508649	24508649	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KIAA1217	NM_019590	exon2	c.A165G	p.S55S	TGGTTCAGTTTCC	.	66	22	80	0	.	98	G	24508649	A	G	24508649	2	3	167	1	0	0	0	0	0	0	0	1	8216	175	7	2		2	KIAA1217	10	24508649	Silent	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	18009979	24508649	111026098	46	21133											
MAT1A	4143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82036284	82036284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAT1A	NM_000429	exon6	c.T616G	p.S206A	GCACAGAGATGAC	.	16	8	19	0	.	90	C	82036284	A	C	82036284	3	2	167	1	0	0	0	0	1	0	0	0	9329	304	11	5	587	5	MAT1A	10	82036284	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	57527635	82036284	53498463	47	21134											
ENTPD1	953	hgsc.bcm.edu;bcgsc.ca	37	10	97624496	97624496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ENTPD1	NM_001164178	exon9	c.G1240T	p.A414S	TCTTACGCTGGAG	.	63	4	66	0	.	93	T	97624496	G	T	97624496	3	4	167	1	0	0	0	0	1	0	0	0	5138	1087	38	1	1335	1	ENTPD1	10	97624496	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	15588212	97624496	37910251	48	21135											
OR51I1	390063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5462429	5462429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	OR51I1	NM_001005288	exon1	c.A316G	p.I106V	TGTGGATGAAGAA	.	70	20	75	0	.	69	C	5462429	T	C	5462429	3	2	167	1	0	0	0	0	1	0	0	0	11100	1464	51	2	632	2	OR51I1	11	5462429	Missense_Mutation	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10		5462429	129544087	49	21136											
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10824602	10824602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EIF4G2	NM_001042559	exon11	c.A971G	p.N324S	ATTTGATTGATCG	.	54	15	58	0	.	91	C	10824602	T	C	10824602	3	2	167	1	0	0	0	0	1	0	0	0	5037	1493	52	2	1800	2	EIF4G2	11	10824602	Missense_Mutation	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	5362173	10824602	124181914	50	21137											
PSMA1	5682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14535383	14535383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PSMA1	NM_148976	exon7	c.C412G	p.L138V	TAAGGAGACCAAC	.	61	17	82	0	.	92	C	14535383	G	C	14535383	3	2	167	1	0	0	0	0	1	0	0	0	12666	942	33	4	417	4	PSMA1	11	14535383	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	3710781	14535383	120471133	51	21138											
LDHAL6A	160287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18499168	18499168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LDHAL6A	NM_144972	exon6	c.G712T	p.G238C	TACAGTGGCTATG	.	75	16	105	0	.	90	T	18499168	G	T	18499168	3	4	167	1	0	0	0	0	1	0	0	0	8699	1362	47	3	734	3	LDHAL6A	11	18499168	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	3963785	18499168	116507348	52	21139											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	21592455	21592455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NELL1	NM_006157	exon18	c.G2126T	p.W709L	ACAATTGGACCCA	.	69	12	82	0	.	155	T	21592455	G	T	21592455	3	4	167	1	0	0	0	0	1	0	0	0	10333	1357	47	3	2196	3	NELL1	11	21592455	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	3093287	21592455	113414061	53	21140											
RAG1	5896	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36596559	36596559	+	Missense_Mutation	SNP	G	G	T	rs138101978		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	RAG1	NM_000448	exon2	c.G1705T	p.A569S	GTGTCTGCTTTGA	.	62	18	80	1	G|1.000;T|0.000	230	T	36596559	G	T	36596559	3	4	167	1	0	0	0	0	1	0	0	0	13003	1319	46	3	1707	3	RAG1	11	36596559	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	15004104	36596559	98409957	54	21141											
IL18BP	10068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71711533	71711533	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	IL18BP	NM_001145057	exon3	c.C165T	p.P55P	CCAGCCCCCAGTG	.	20	6	26	0	.	90	T	71711533	C	T	71711533	2	4	167	1	0	0	0	0	0	0	0	1	7646	610	22	3		3	IL18BP	11	71711533	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	35114974	71711533	63294983	55	21142											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73824849	73824849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C2CD3	NM_015531	exon11	c.G1819T	p.A607S	TGGAGGCGAGTCG	.	51	5	47	0	.	75	A	73824849	C	A	73824849	3	1	167	1	0	0	0	0	1	0	0	0	2154	768	27	1	4156	1	C2CD3	11	73824849	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	2113316	73824849	61181667	56	21143											
TMPRSS13	84000	ucsc.edu;bcgsc.ca	37	11	117782522	117782522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TMPRSS13	NM_001206790	exon6	c.T863A	p.I288N	CTCAAGATTGAGA	.	31	4	51	0	.	91	T	117782522	A	T	117782522	3	4	167	1	0	0	0	0	1	0	0	0	16242	333	12	4	872	4	TMPRSS13	11	117782522	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	43957673	117782522	17223994	57	21144											
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20766493	20766493	+	Silent	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PDE3A	NM_000921	exon3	c.C1128A	p.A376A	GAGAGCCGTGAGC	.	71	22	73	0	.	94	A	20766493	C	A	20766493	2	1	167	1	0	0	0	0	0	0	0	1	11637	639	23	1		1	PDE3A	12	20766493	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		20766493	113085402	58	21145											
KRT81	3887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52681386	52681386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KRT81	NM_002281	exon6	c.G1020T	p.K340N	CTGGCACTTGGCA	.	50	18	57	0	.	90	A	52681386	C	A	52681386	3	1	167	1	0	0	0	0	1	0	0	0	8495	564	20	3	513	3	KRT81	12	52681386	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	31914893	52681386	81170509	59	21146											
KRT78	196374	broad.mit.edu;mdanderson.org	37	12	53242690	53242690	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KRT78	NM_173352	exon1	c.C25T	p.Q9X	CCCTCTGGGCCCG	.	19	8	22	0	.	188	A	53242690	G	A	53242690	4	1	167	1	0	0	0	0	0	1	0	0	8491	1357	47	3	1573	3	KRT78	12	53242690	Nonsense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	561304	53242690	80609205	60	21147											
NCKAP1L	3071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54910687	54910687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NCKAP1L	NM_005337	exon11	c.T1006C	p.F336L	GGCCAGTTTCATT	.	78	19	97	0	.	93	C	54910687	T	C	54910687	3	2	167	1	0	0	0	0	1	0	0	0	10222	1725	60	2	1048	2	NCKAP1L	12	54910687	Missense_Mutation	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	1667997	54910687	78941208	61	21148											
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38162065	38162065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	POSTN	NM_006475	exon5	c.G500A	p.S167N	ATGTGACTATGTA	.	317	102	356	0	.	516	T	38162065	C	T	38162065	3	4	167	1	0	0	0	0	1	0	0	0	12259	565	20	3	2086	3	POSTN	13	38162065	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		38162065	77007813	62	21149											
COQ6	51004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	74428466	74428466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	COQ6	NM_182476	exon11	c.G1237T	p.E413X	GGTTATGAAACAG	.	40	13	52	0	.	90	T	74428466	G	T	74428466	4	4	167	1	0	0	0	0	0	1	0	0	3749	1291	45	3	1279	3	COQ6	14	74428466	Nonsense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		74428466	32921074	63	21150											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	28419597	28419597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HERC2	NM_004667	exon65	c.T10001G	p.V3334G	TCGTGGACAGAGG	.	211	67	211	0	.	234	C	28419597	A	C	28419597	3	2	167	1	0	0	0	0	1	0	0	0	7058	275	10	5	4619	5	HERC2	15	28419597	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10		28419597	74111795	64	21151											
ARHGAP11B	89839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	30926529	30926529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ARHGAP11B	NM_001039841	exon4	c.A454G	p.K152E	GAGGAAAAGAATA	.	431	113	461	0	.	22	G	30926529	A	G	30926529	3	3	167	1	0	0	0	0	1	0	0	0	864	15	1	2	468	2	ARHGAP11B	15	30926529	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	2506932	30926529	71604863	65	21152											
CTDSPL2	51496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44816346	44816346	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CTDSPL2	NM_016396	exon13	c.T1375C	p.L459L	TTTCGCTTGCATG	.	49	24	46	0	.	90	C	44816346	T	C	44816346	2	2	167	1	0	0	0	0	0	0	0	1	4006	1606	56	2		2	CTDSPL2	15	44816346	Silent	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	13889817	44816346	57715046	66	21153											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	62226473	62226473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VPS13C	NM_020821	exon49	c.T5813G	p.F1938C	AAGTCAAATTGGA	.	236	10	280	0	.	92	C	62226473	A	C	62226473	3	2	167	1	0	0	0	0	1	0	0	0	17188	14	1	5	5624	5	VPS13C	15	62226473	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	17410127	62226473	40304919	67	21154											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63031555	63031555	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TLN2	NM_015059	exon28	c.A3696G	p.P1232P	ACCTCCAAGCACG	.	37	7	37	0	.	573	G	63031555	A	G	63031555	2	3	167	1	0	0	0	0	0	0	0	1	15945	117	5	2		2	TLN2	15	63031555	Silent	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	805082	63031555	39499837	68	21155											
AEN	64782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	89169543	89169543	+	Nonsense_Mutation	SNP	C	C	T	rs199532354		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	AEN	NM_022767	exon2	c.C103T	p.R35X	AGGAGCCGACAGC	.	23	5	15	0	C|0.998;T|0.002	226	T	89169543	C	T	89169543	4	4	167	1	0	0	0	0	0	1	0	0	351	644	23	1	105	1	AEN	15	89169543	Nonsense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	26137988	89169543	13361849	69	21156											
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29891311	29891311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SEZ6L2	NM_001243332	exon9	c.C1447T	p.P483S	CCCCTGGGCGATA	.	50	14	61	0	.	92	A	29891311	G	A	29891311	3	1	167	1	0	0	0	0	1	0	0	0	14144	1232	43	3	1364	3	SEZ6L2	16	29891311	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		29891311	60463442	70	21157											
GAN	8139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81390417	81390417	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GAN	NM_022041	exon4	c.C661T	p.L221L	TCAGCTCTGTGGG	.	149	46	132	0	.	92	T	81390417	C	T	81390417	2	4	167	1	0	0	0	0	0	0	0	1	6232	912	32	3		3	GAN	16	81390417	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	51499106	81390417	8964336	71	21158											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19459199	19459199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SLC47A1	NM_018242	exon9	c.A830G	p.Y277C	GGGCCTATGAGGT	.	22	7	25	0	.	90	G	19459199	A	G	19459199	3	3	167	1	0	0	0	0	1	0	0	0	14647	449	16	2	864	2	SLC47A1	17	19459199	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10		19459199	61736011	72	21159											
LRRC37B	114659	broad.mit.edu;ucsc.edu	37	17	30351740	30351740	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LRRC37B	NM_052888	exon2	c.G1690T	p.G564X	TTCCAAGGAAACT	.	446	137	610	2	.	92	T	30351740	G	T	30351740	4	4	167	1	0	0	0	0	0	1	0	0	8994	1001	35	3	1696	3	LRRC37B	17	30351740	Nonsense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	10892541	30351740	50843470	73	21160											
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42964016	42964016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EFTUD2	NM_004247	exon3	c.G208A	p.E70K	CCTCCTCGGCTGT	.	50	12	58	0	.	91	T	42964016	C	T	42964016	3	4	167	1	0	0	0	0	1	0	0	0	4961	893	31	1	2814	1	EFTUD2	17	42964016	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	12612276	42964016	38231194	74	21161											
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59947136	59947136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	INTS2	NM_020748	exon21	c.A3016G	p.I1006V	CTGCAATGTACAT	.	70	22	71	0	.	206	C	59947136	T	C	59947136	3	2	167	1	0	0	0	0	1	0	0	0	7778	1464	51	2	618	2	INTS2	17	59947136	Missense_Mutation	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	16983120	59947136	21248074	75	21162											
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12356735	12356735	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	AFG3L2	NM_006796	exon9	c.A1122C	p.G374G	CTCAGATCCACTA	.	51	11	58	0	.	90	G	12356735	T	G	12356735	2	3	167	1	0	0	0	0	0	0	0	1	360	1422	50	5		5	AFG3L2	18	12356735	Silent	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10		12356735	65720513	76	21163											
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60241963	60241963	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZCCHC2	NM_017742	exon13	c.T2649G	p.P883P	GGTGCCTCAAATT	.	102	25	114	0	.	432	G	60241963	T	G	60241963	2	3	167	1	0	0	0	0	0	0	0	1	17584	1538	54	5		5	ZCCHC2	18	60241963	Silent	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	47885228	60241963	17835285	77	21164											
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7960521	7960521	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LRRC8E	NM_001268284	exon3	c.G33A	p.T11T	GTTCACGGAACAG	.	56	21	109	0	.	92	A	7960521	G	A	7960521	2	1	167	1	0	0	0	0	0	0	0	1	9025	1103	39	1		1	LRRC8E	19	7960521	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		7960521	51168462	78	21165											
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12757461	12757461	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAN2B1	NM_000528	exon24	c.A3009G	p.S1003S	TTGAACTGAGGCC	.	62	13	72	0	.	94	C	12757461	T	C	12757461	2	2	167	1	0	0	0	0	0	0	0	1	9216	1567	55	2		2	MAN2B1	19	12757461	Silent	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	4796940	12757461	46371522	79	21166											
CACNA1A	773	bcgsc.ca;mdanderson.org	37	19	13325091	13325091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CACNA1A	NM_001127221	exon40	c.C5899G	p.R1967G	TCTGCCGGTAGTA	.	17	4	21	0	.	67	C	13325091	G	C	13325091	3	2	167	1	0	0	0	0	1	0	0	0	2538	1115	39	4	1656	4	CACNA1A	19	13325091	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	567630	13325091	45803892	80	21167											
SCN1B	6324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35524522	35524522	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SCN1B	NM_001037	exon3	c.C327T	p.T109T	CATCACCAATGTC	.	65	26	73	1	.	91	T	35524522	C	T	35524522	2	4	167	1	0	0	0	0	0	0	0	1	13915	581	21	3		3	SCN1B	19	35524522	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10	22199431	35524522	23604461	81	21168											
GGN	199720	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38877684	38877684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GGN	NM_152657	exon3	c.T218C	p.L73P	AGGGGCAGGGTCG	.	44	9	64	0	.	90	G	38877684	A	G	38877684	3	3	167	1	0	0	0	0	1	0	0	0	6358	188	7	2	1748	2	GGN	19	38877684	Missense_Mutation	SNP	A	TCGA-K7-A6G5-01A-11D-A30V-10	3353162	38877684	20251299	82	21169											
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44515439	44515440	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF230	NM_006300	exon5	c.1248_1249insA	p.R416fs	CTGCCGGAAAAAA	.	113	24	120	0	.	90	A	44515440	-	A	44515439	7	5	167	1	0	1	1	0	0	0	0	0	17781	1161	41	0	1262	0	ZNF230	19	44515439	Frame_Shift_Ins	INS	-	TCGA-K7-A6G5-01A-11D-A30V-10	5637755	44515439	14613544	83	21170											
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630358	51630358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SIGLEC9	NM_001198558	exon4	c.G820A	p.V274I	TGTGCAGTTGATG	.	40	8	52	0	.	91	A	51630358	G	A	51630358	3	1	167	1	0	0	0	0	1	0	0	0	14315	1029	36	3	834	3	SIGLEC9	19	51630358	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	7114919	51630358	7498625	84	21171											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	9449315	9449315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PLCB4	NM_001172646	exon35	c.G3346T	p.E1116X	GAACGGGAAAGGT	.	49	18	57	0	.	274	T	9449315	G	T	9449315	4	4	167	1	0	0	0	0	0	1	0	0	12030	1175	41	3	3476	3	PLCB4	20	9449315	Nonsense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		9449315	53576205	85	21172											
CD93	22918	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	23066708	23066708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CD93	NM_012072	exon1	c.C122A	p.S41X	TTGCCCGAGTGGG	.	13	4	33	0	.	153	T	23066708	G	T	23066708	4	4	167	1	0	0	0	0	0	1	0	0	3047	1059	37	1	1844	1	CD93	20	23066708	Nonsense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	13617393	23066708	39958812	86	21173											
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28296456	28296456	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ADAMTS5	NM_007038	exon8	c.G2709A	p.Q903Q	TCCATCCTGGCAC	.	43	15	56	0	.	229	T	28296456	C	T	28296456	2	4	167	1	0	0	0	0	0	0	0	1	269	680	24	3		3	ADAMTS5	21	28296456	Silent	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		28296456	19833439	87	21174											
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29664336	29664336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EWSR1	NM_013986	exon1	c.C11G	p.T4R	CGTCCACGGGTGA	.	43	11	56	0	.	3375	G	29664336	C	G	29664336	3	3	167	1	0	0	0	0	1	0	0	0	5296	536	19	4	13	4	EWSR1	22	29664336	Missense_Mutation	SNP	C	TCGA-K7-A6G5-01A-11D-A30V-10		29664336	21640230	88	21175											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45960824	45960824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	FBLN1	NM_006485	exon15	c.G1758T	p.R586S	CTGCAGGGTTCTT	.	41	15	55	0	.	515	T	45960824	G	T	45960824	3	4	167	1	0	0	0	0	1	0	0	0	5698	1223	43	3	2183	3	FBLN1	22	45960824	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	16296488	45960824	5343742	89	21176											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248697	3248697	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MXRA5	NM_015419	exon3	c.C306T	p.L102L	AGAGCTGAGGTCT	.	35	17	55	0	.	136	A	3248697	G	A	3248697	2	1	167	1	0	0	0	0	0	0	0	1	10003	1277	45	3		3	MXRA5	23	3248697	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10		3248697	152021863	90	21177											
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65253415	65253415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VSIG4	NM_001100431	exon2	c.A313G	p.M105V	CATCCATCTCCAG	.	62	27	52	0	.	130	C	65253415	T	C	65253415	3	2	167	1	0	0	0	0	1	0	0	0	17222	1435	50	2	918	2	VSIG4	23	65253415	Missense_Mutation	SNP	T	TCGA-K7-A6G5-01A-11D-A30V-10	62004718	65253415	90017145	91	21178											
SPANXC	64663	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140335728	140335728	+	Silent	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SPANXC	NM_022661	exon2	c.C216A	p.A72A	CTCTCGGGCGTGG	.	308	165	219	0	.	62	T	140335728	G	T	140335728	2	4	167	1	0	0	0	0	0	0	0	1	14987	1219	43	3		3	SPANXC	23	140335728	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	75082313	140335728	14934832	92	21179											
SPANXE	171489	broad.mit.edu;bcgsc.ca	37	X	140785700	140785700	+	Silent	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_145665	exon2	c.C216A	p.A72A	CTTTCGGGCGTGG	.	552	95	397	0	.	.	T	140785700	G	T	140785700	2	4	167	1	0	0	0	0	0	0	0	1	14989	1219	43	3		3	SPANXE	23	140785700	Silent	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	449972	140785700	14484860	93	21180											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151821124	151821124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GABRQ	NM_018558	exon9	c.G1279C	p.A427P	CAGCTGGCCACCT	.	84	44	64	0	.	133	C	151821124	G	C	151821124	3	2	167	1	0	0	0	0	1	0	0	0	6175	1203	42	4	1313	4	GABRQ	23	151821124	Missense_Mutation	SNP	G	TCGA-K7-A6G5-01A-11D-A30V-10	11035424	151821124	3449436	94	21181											
PPT1	5538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40539787	40539787	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PPT1	NM_000310	exon9	c.T867C	p.H289H	CTGAAGATGGTCC	.	78	16	83	0	.	91	G	40539787	A	G	40539787	2	3	168	1	0	0	0	0	0	0	0	1	12411	330	12	2		2	PPT1	1	40539787	Silent	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10		40539787	208710834	1	21182											
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	100214255	100214256	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	FRRS1	NM_001013660	exon3	c.70_71insT	p.P24fs	CATTGGGATAATT	.	265	72	215	0	.	91	A	100214256	-	A	100214255	7	5	168	1	0	1	1	0	0	0	0	0	6060	1174	41	0	1870	0	FRRS1	1	100214255	Frame_Shift_Ins	INS	-	TCGA-KR-A7K0-01A-12D-A33Q-10	59674468	100214255	149036366	2	21183											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116932324	116932324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ATP1A1	NM_001160233	exon8	c.G1018A	p.V340I	GCCACTGTCACGG	.	95	34	62	0	.	91	A	116932324	G	A	116932324	3	1	168	1	0	0	0	0	1	0	0	0	1128	1377	48	3	1064	3	ATP1A1	1	116932324	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	16718069	116932324	132318297	3	21184											
RUSC1	23623	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	155292686	155292686	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	RUSC1	NM_001105203	exon2	c.C1122A	p.L374L	GGAACTCCGGTCC	.	131	38	99	0	.	92	A	155292686	C	A	155292686	2	1	168	1	0	0	0	0	0	0	0	1	13750	842	30	3		3	RUSC1	1	155292686	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	38360362	155292686	93957935	4	21185											
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155736387	155736387	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	GON4L	NM_001037533	exon21	c.C2877T	p.D959D	CAAATTGTCTTTT	.	186	39	117	0	.	93	A	155736387	G	A	155736387	2	1	168	1	0	0	0	0	0	0	0	1	6572	1368	48	3		3	GON4L	1	155736387	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	443701	155736387	93514234	5	21186											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	185985310	185985310	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	HMCN1	NM_031935	exon32	c.C5130A	p.Y1710X	ACAGTACATATGC	.	205	111	138	0	.	113	A	185985310	C	A	185985310	4	1	168	1	0	0	0	0	0	1	0	0	7220	489	17	3	5256	3	HMCN1	1	185985310	Nonsense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	30248923	185985310	63265311	6	21187											
CFH	3075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196684870	196684870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CFH	NM_000186	exon11	c.A1667T	p.N556I	GTTACAATGGTTG	.	176	83	149	0	.	566	T	196684870	A	T	196684870	3	4	168	1	0	0	0	0	1	0	0	0	3283	101	4	4	1727	4	CFH	1	196684870	Missense_Mutation	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10	10699560	196684870	52565751	7	21188											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215932021	215932021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	USH2A	NM_206933	exon58	c.A11305T	p.M3769L	TTGACATAGGTGT	.	125	18	81	0	.	115	A	215932021	T	A	215932021	3	1	168	1	0	0	0	0	1	0	0	0	17033	1406	49	4	4363	4	USH2A	1	215932021	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	19247151	215932021	33318600	8	21189											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228560355	228560355	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	OBSCN	NM_001271223	exon105	c.C24747T	p.A8249A	GGCGGCCGACACA	.	382	176	296	0	.	403	T	228560355	C	T	228560355	2	4	168	1	0	0	0	0	0	0	0	1	10812	639	23	1		1	OBSCN	1	228560355	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	12628334	228560355	20690266	9	21190											
CMPK2	129607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	7003632	7003632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CMPK2	NM_001256478	exon2	c.G753T	p.K251N	CTGGAACTTTCCT	.	138	40	103	0	.	68	A	7003632	C	A	7003632	3	1	168	1	0	0	0	0	1	0	0	0	3581	564	20	3	612	3	CMPK2	2	7003632	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		7003632	236195741	10	21191											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21232581	21232585	+	Frame_Shift_Del	DEL	TTATC	TTATC	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	TTATC	TTATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	APOB	NM_000384	exon26	c.7155_7159del	p.2385_2387del	AATCTTTTATCTT	.	222	67	172	0	.	175	-	21232585	TTATC	-	21232581	7	5	168	1	0	1	0	1	0	0	0	0	785	1850	64	0	6548	0	APOB	2	21232581	Frame_Shift_Del	DEL	TTATC	TCGA-KR-A7K0-01A-12D-A33Q-10	14228949	21232581	221966792	11	21192											
LBH	81606	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	30480370	30480370	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LBH	NM_030915	exon3	c.A201G	p.E67E	GGTGGAACCCACA	.	87	27	93	1	.	90	G	30480370	A	G	30480370	2	3	168	1	0	0	0	0	0	0	0	1	8650	40	2	2		2	LBH	2	30480370	Silent	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10	9247789	30480370	212719003	12	21193											
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69379340	69379340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ANTXR1	NM_032208	exon13	c.T991C	p.F331L	ATCCTGTTCCTGC	.	71	14	70	0	.	94	C	69379340	T	C	69379340	3	2	168	1	0	0	0	0	1	0	0	0	711	1725	60	2	1096	2	ANTXR1	2	69379340	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	38898970	69379340	173820033	13	21194											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167298065	167298065	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	SCN7A	NM_002976	exon14	c.C1998A	p.L666L	GCGTGGGAGTTGA	.	247	82	204	0	.	67	T	167298065	G	T	167298065	2	4	168	1	0	0	0	0	0	0	0	1	13923	1161	41	3		3	SCN7A	2	167298065	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	97918725	167298065	75901308	14	21195											
TLK1	9874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171853223	171853223	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TLK1	NM_012290	exon20	c.A2064G	p.T688T	TAATATTGTATTT	.	65	12	59	0	.	439	C	171853223	T	C	171853223	2	2	168	1	0	0	0	0	0	0	0	1	15940	1799	63	2		2	TLK1	2	171853223	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	4555158	171853223	71346150	15	21196											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179438088	179438088	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TTN	NM_001267550	exon326	c.T72771C	p.Y24257Y	CACAATATAATTG	.	63	17	65	0	.	636	G	179438088	A	G	179438088	2	3	168	1	0	0	0	0	0	0	0	1	16732	456	16	2		2	TTN	2	179438088	Silent	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10	7584865	179438088	63761285	16	21197											
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210594614	210594614	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MAP2	NM_002374	exon14	c.C5196T	p.F1732F	AGATTTCAAAGAA	.	133	25	123	0	.	591	T	210594614	C	T	210594614	2	4	168	1	0	0	0	0	0	0	0	1	9235	825	29	3		3	MAP2	2	210594614	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	31156526	210594614	32604759	17	21198											
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32774933	32774933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CNOT10	NM_001256742	exon11	c.A1414G	p.K472E	GAAACTAAAGGCC	.	272	80	275	0	.	91	G	32774933	A	G	32774933	3	3	168	1	0	0	0	0	1	0	0	0	3618	363	13	2	1276	2	CNOT10	3	32774933	Missense_Mutation	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10		32774933	165247497	18	21199											
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38017293	38017293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CTDSPL	NM_001008392	exon7	c.G613T	p.V205L	AACTACGTGAAGG	.	63	25	71	0	.	90	T	38017293	G	T	38017293	3	4	168	1	0	0	0	0	1	0	0	0	4005	1145	40	1	639	1	CTDSPL	3	38017293	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	5242360	38017293	160005137	19	21200											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266112	41266112	+	Missense_Mutation	SNP	T	T	G	rs121913228	bycluster	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T109G	p.S37A	ATCCATTCTGGTG	.	162	25	163	0	.	24361	G	41266112	T	G	41266112	3	3	168	1	0	0	0	0	1	0	0	0	4016	1783	62	5	115	5	CTNNB1	3	41266112	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	3248819	41266112	156756318	20	21201											
PXK	54899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	58383369	58383369	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PXK	NM_017771	exon11	c.T1022G	p.L341X	GCCACTTACTGTA	.	98	28	124	0	.	334	G	58383369	T	G	58383369	4	3	168	1	0	0	0	0	0	1	0	0	12849	1764	61	5	1064	5	PXK	3	58383369	Nonsense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	17117257	58383369	139639061	21	21202											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112358134	112358134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CCDC80	NM_199511	exon2	c.G619A	p.G207S	TCTGGCCCTCGCT	.	93	27	98	0	.	92	T	112358134	C	T	112358134	3	4	168	1	0	0	0	0	1	0	0	0	2854	623	22	3	2261	3	CCDC80	3	112358134	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	53974765	112358134	85664296	22	21203											
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5798959	5798959	+	Silent	SNP	G	G	T	rs201083145	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	EVC	NM_153717	exon14	c.G2097T	p.L699L	GGCCCTGGTAAGA	.	109	38	109	0	G|0.999;A|0.000	92	T	5798959	G	T	5798959	2	4	168	1	0	0	0	0	0	0	0	1	5285	1362	47	3		3	EVC	4	5798959	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10		5798959	185355317	23	21204											
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467891	66467891	+	Silent	SNP	G	G	T	rs55882537		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	EPHA5	NM_004439	exon3	c.C378A	p.I126I	TATGAAGATTCTG	.	55	17	56	0	.	1430	T	66467891	G	T	66467891	2	4	168	1	0	0	0	0	0	0	0	1	5170	932	33	3		3	EPHA5	4	66467891	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	60668932	66467891	124686385	24	21205											
TMPRSS11D	9407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68693206	68693206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TMPRSS11D	NM_004262	exon8	c.C725A	p.S242Y	ATACCAGACGTGG	.	131	44	107	1	.	91	T	68693206	G	T	68693206	3	4	168	1	0	0	0	0	1	0	0	0	16238	942	33	3	543	3	TMPRSS11D	4	68693206	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	2225315	68693206	122461070	25	21206											
BTC	685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75675929	75675929	+	Silent	SNP	G	G	T	rs146656652	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	BTC	NM_001729	exon4	c.C282A	p.V94V	ATCACAGCTATAA	.	410	107	381	0	G|1.000;C|0.000	523	T	75675929	G	T	75675929	2	4	168	1	0	0	0	0	0	0	0	1	1549	985	34	3		3	BTC	4	75675929	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	6982723	75675929	115478347	26	21207											
AFF1	4299	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	88048838	88048838	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	AFF1	NM_001166693	exon16	c.C2947T	p.Q983X	ATGAAGCAGAAAG	.	102	42	126	1	.	289	T	88048838	C	T	88048838	4	4	168	1	0	0	0	0	0	1	0	0	356	711	25	3	3026	3	AFF1	4	88048838	Nonsense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	12372909	88048838	103105438	27	21208											
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	88732574	88732609	+	In_Frame_Del	DEL	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	IBSP	NM_004967	exon7	c.466_501del	p.156_167del	GAGGAGGAAGAGG	.	108	18	134	0	.	90	-	88732609	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	-	88732574	7	5	168	1	0	1	0	1	0	0	0	0	7475	1175	41	0	488	0	IBSP	4	88732574	In_Frame_Del	DEL	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	TCGA-KR-A7K0-01A-12D-A33Q-10	683736	88732574	102421702	28	21209											
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96761797	96761797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PDHA2	NM_005390	exon1	c.G496A	p.G166S	ATCGTCGGTGCAC	.	75	22	71	0	.	90	A	96761797	G	A	96761797	3	1	168	1	0	0	0	0	1	0	0	0	11665	1116	39	1	498	1	PDHA2	4	96761797	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	8029223	96761797	94392479	29	21210											
PHF17	79960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	129792900	129792900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PHF17	NM_199320	exon11	c.G2012C	p.G671A	TTAAAGGAGACTT	.	186	65	171	1	.	90	C	129792900	G	C	129792900	3	2	168	1	0	0	0	0	1	0	0	0	11828	1174	41	4	2077	4	PHF17	4	129792900	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	33031103	129792900	61361376	30	21211											
TMEM192	201931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166000907	166000907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TMEM192	NM_001100389	exon6	c.A719T	p.D240V	ATGGTGTCTCCTT	.	97	37	73	0	.	69	A	166000907	T	A	166000907	3	1	168	1	0	0	0	0	1	0	0	0	16112	1667	58	4	100	4	TMEM192	4	166000907	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	36208007	166000907	25153369	31	21212											
CLCN3	1182	hgsc.bcm.edu;broad.mit.edu	37	4	170618416	170618417	+	In_Frame_Ins	INS	-	-	CAT	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CLCN3	NM_173872	exon9	c.1094_1095insCAT	p.S365delinsSI	TGAGGTCCATCAA	.	218	55	183	0	.	136	CAT	170618417	-	CAT	170618416	7	5	168	1	0	1	1	0	0	0	0	0	3464	855	30	0	1124	0	CLCN3	4	170618416	In_Frame_Ins	INS	-	TCGA-KR-A7K0-01A-12D-A33Q-10	4617509	170618416	20535860	32	21213	126	2									
CLCN3	1182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	170618424	170618424	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CLCN3	NM_001829	exon9	c.1102delC	p.P368fs	ATCAATCCATTTG	.	226	62	183	0	.	136	-	170618424	C	-	170618424	7	5	168	1	0	1	0	1	0	0	0	0	3464	855	30	0	1132	0	CLCN3	4	170618424	Frame_Shift_Del	DEL	C	TCGA-KR-A7K0-01A-12D-A33Q-10	8	170618424	20535852	33	21214	126	2									
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32089543	32089543	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PDZD2	NM_178140	exon19	c.A5989T	p.M1997L	CAAGGCATGTGGA	.	48	13	43	0	.	563	T	32089543	A	T	32089543	3	4	168	1	0	0	0	0	1	0	0	0	11701	217	8	4	6063	4	PDZD2	5	32089543	Missense_Mutation	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10		32089543	148825717	34	21215											
ZFR	51663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32404160	32404160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ZFR	NM_016107	exon7	c.G1075A	p.E359K	CAGCTTCTTTTTT	.	88	13	100	2	.	90	T	32404160	C	T	32404160	3	4	168	1	0	0	0	0	1	0	0	0	17656	922	32	3	2205	3	ZFR	5	32404160	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	314617	32404160	148511100	35	21216											
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40762932	40762932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PRKAA1	NM_206907	exon10	c.C1673A	p.T558K	TCTATTGTGTGAC	.	116	25	153	0	.	792	T	40762932	G	T	40762932	3	4	168	1	0	0	0	0	1	0	0	0	12493	1377	48	3	55	3	PRKAA1	5	40762932	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	8358772	40762932	140152328	36	21217											
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	59940645	59940645	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DEPDC1B	NM_001145208	exon5	c.C636A	p.V212V	CGAATTGACAAGT	.	158	53	137	0	.	91	T	59940645	G	T	59940645	2	4	168	1	0	0	0	0	0	0	0	1	4440	1277	45	3		3	DEPDC1B	5	59940645	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	19177713	59940645	120974615	37	21218											
ST8SIA4	7903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	100147642	100147642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ST8SIA4	NM_005668	exon5	c.C989A	p.P330H	CTGTGAGGGCTTG	.	88	21	108	0	.	153	T	100147642	G	T	100147642	3	4	168	1	0	0	0	0	1	0	0	0	15233	1000	35	3	94	3	ST8SIA4	5	100147642	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	40206997	100147642	80767618	38	21219											
STK32A	202374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	146752851	146752851	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	STK32A	NM_001112724	exon10	c.T897C	p.I299I	TTTCATTCCTAAT	.	95	38	72	0	.	521	C	146752851	T	C	146752851	2	2	168	1	0	0	0	0	0	0	0	1	15296	1771	62	2		2	STK32A	5	146752851	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	46605209	146752851	34162409	39	21220											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169186741	169186741	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DOCK2	NM_004946	exon24	c.G2409T	p.L803L	TGTCCTGCATGAT	.	81	23	83	0	.	97	T	169186741	G	T	169186741	2	4	168	1	0	0	0	0	0	0	0	1	4687	1306	46	3		3	DOCK2	5	169186741	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	22433890	169186741	11728519	40	21221											
PRELID1	27166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176732936	176732936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PRELID1	NM_013237	exon3	c.G383A	p.R128Q	TCCGCCGGGAAGC	.	53	12	70	0	.	90	A	176732936	G	A	176732936	3	1	168	1	0	0	0	0	1	0	0	0	12471	1116	39	1	393	1	PRELID1	5	176732936	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	7546195	176732936	4182324	41	21222											
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4032471	4032471	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PRPF4B	NM_003913	exon2	c.A720G	p.K240K	ATCAAAATCCCCT	.	178	47	152	0	.	1308	G	4032471	A	G	4032471	2	3	168	1	0	0	0	0	0	0	0	1	12573	98	4	2		2	PRPF4B	6	4032471	Silent	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10		4032471	167082596	42	21223											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30893707	30893707	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	VARS2	NM_001167734	exon29	c.C3102T	p.Y1034Y	AAGGTACAAGTTG	.	147	59	151	0	.	26	T	30893707	C	T	30893707	2	4	168	1	0	0	0	0	0	0	0	1	17121	489	17	3		3	VARS2	6	30893707	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	26861236	30893707	140221360	43	21224											
PBX2	5089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32156140	32156140	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PBX2	NM_002586	exon3	c.C437G	p.S146C	CCACCAGAGGCTG	.	57	16	59	0	.	91	C	32156140	G	C	32156140	3	2	168	1	0	0	0	0	1	0	0	0	11493	942	33	4	883	4	PBX2	6	32156140	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	1262433	32156140	138958927	44	21225											
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35471363	35471363	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TULP1	NM_003322	exon13	c.C1296T	p.N432N	CCTCTCGTTCTCC	.	73	10	81	0	.	92	A	35471363	G	A	35471363	2	1	168	1	0	0	0	0	0	0	0	1	16770	1136	40	1		1	TULP1	6	35471363	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	3315223	35471363	135643704	45	21226											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	40360309	40360309	+	Silent	SNP	G	G	A	rs147506870	byfrequency	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LRFN2	NM_020737	exon3	c.C1743T	p.G581G	CTGGGCGCCGTTG	.	26	9	26	0	G|1.000;A|0.000	93	A	40360309	G	A	40360309	2	1	168	1	0	0	0	0	0	0	0	1	8938	1074	38	1		1	LRFN2	6	40360309	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	4888946	40360309	130754758	46	21227											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51523772	51523772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PKHD1	NM_138694	exon61	c.T11152C	p.S3718P	CCTTTGACTGAGT	.	74	13	81	0	.	603	G	51523772	A	G	51523772	3	3	168	1	0	0	0	0	1	0	0	0	11971	275	10	2	1100	2	PKHD1	6	51523772	Missense_Mutation	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10	11163463	51523772	119591295	47	21228											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	.	.	.	p.T432L	GCAACTGTCTGTC	.	358	115	380	0	.	.	AA	74227628	GT	AA	74227627	3	1	168	1	0	0	0	0	1	0	0	0	4923	1377	48	3	97	3	EEF1A1	6	74227627	Missense_Mutation	DNP	GT	TCGA-KR-A7K0-01A-12D-A33Q-10	22703855	74227627	96887440	48	21229											
POU3F2	5454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	99283906	99283906	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	POU3F2	NM_005604	exon1	c.1157delC	p.S386fs	TCACCTCCCTCGC	.	110	29	81	0	.	90	-	99283906	C	-	99283906	7	5	168	1	0	1	0	1	0	0	0	0	12275	855	30	0	1159	0	POU3F2	6	99283906	Frame_Shift_Del	DEL	C	TCGA-KR-A7K0-01A-12D-A33Q-10	25056279	99283906	71831161	49	21230											
FRMD1	79981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	168464373	168464373	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	FRMD1	NM_024919	exon6	c.C712T	p.Q238X	GGCCCTGGCGCTC	.	109	21	120	0	.	91	A	168464373	G	A	168464373	4	1	168	1	0	0	0	0	0	1	0	0	6049	1357	47	3	961	3	FRMD1	6	168464373	Nonsense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	69180467	168464373	2650694	50	21231											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48467381	48467381	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ABCA13	NM_152701	exon42	c.C12478G	p.Q4160E	CTTTTGCAAGATT	.	67	24	64	0	.	521	G	48467381	C	G	48467381	3	3	168	1	0	0	0	0	1	0	0	0	31	711	25	4	12473	4	ABCA13	7	48467381	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		48467381	110671282	51	21232											
LAT2	7462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73631176	73631176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LAT2	NM_032464	exon4	c.T116G	p.I39S	AGAAAATCTACCA	.	98	27	86	0	.	90	G	73631176	T	G	73631176	3	3	168	1	0	0	0	0	1	0	0	0	8645	1435	50	5	122	5	LAT2	7	73631176	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	25163795	73631176	85507487	52	21233											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88965181	88965181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ZNF804B	NM_181646	exon4	c.C2885T	p.P962L	AAGTCCCATGCAC	.	299	100	283	0	.	101	T	88965181	C	T	88965181	3	4	168	1	0	0	0	0	1	0	0	0	18168	594	21	3	2899	3	ZNF804B	7	88965181	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	15334005	88965181	70173482	53	21234											
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89982211	89982211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	GTPBP10	NM_001042717	exon2	c.G115A	p.G39S	GGAGAAGGTGGAA	.	164	48	144	0	.	68	A	89982211	G	A	89982211	3	1	168	1	0	0	0	0	1	0	0	0	6879	1000	35	3	121	3	GTPBP10	7	89982211	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	1017030	89982211	69156452	54	21235											
EPHX2	2053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27382882	27382882	+	Silent	SNP	G	G	T	rs200523278	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	EPHX2	NM_001979	exon12	c.G1062T	p.A354A	TAGGGCGGTGGCC	.	141	46	159	1	G|0.999;A|0.001	91	T	27382882	G	T	27382882	2	4	168	1	0	0	0	0	0	0	0	1	5180	1103	39	1		1	EPHX2	8	27382882	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10		27382882	118981140	55	21236											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30694575	30694575	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TEX15	NM_031271	exon3	c.G8076T	p.G2692G	CAACAGCCCAGAA	.	121	40	109	0	.	97	A	30694575	C	A	30694575	2	1	168	1	0	0	0	0	0	0	0	1	15776	726	26	3		3	TEX15	8	30694575	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	3311693	30694575	115669447	56	21237											
TGS1	96764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	56698309	56698309	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TGS1	NM_024831	exon3	c.T198C	p.G66G	AGGTGGTTATTCC	.	209	57	161	0	.	227	C	56698309	T	C	56698309	2	2	168	1	0	0	0	0	0	0	0	1	15834	1712	60	2		2	TGS1	8	56698309	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	26003734	56698309	89665713	57	21238											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141370238	141370238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TRAPPC9	NM_031466	exon9	c.A1700G	p.Y567C	GAGGCGTAGACCA	.	116	13	92	0	.	228	C	141370238	T	C	141370238	3	2	168	1	0	0	0	0	1	0	0	0	16462	1638	57	2	2100	2	TRAPPC9	8	141370238	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	84671929	141370238	4993784	58	21239											
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130489325	130489325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TTC16	NM_144965	exon11	c.C1502T	p.A501V	ACCTGGCCAGGCT	.	49	18	43	0	.	90	T	130489325	C	T	130489325	3	4	168	1	0	0	0	0	1	0	0	0	16680	739	26	3	1544	3	TTC16	9	130489325	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		130489325	10724106	59	21240											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132632793	132632793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	USP20	NM_001008563	exon15	c.C1627T	p.L543F	GACTGCCTTGCTG	.	90	21	88	0	.	658	T	132632793	C	T	132632793	3	4	168	1	0	0	0	0	1	0	0	0	17049	681	24	3	1677	3	USP20	9	132632793	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	2143468	132632793	8580638	60	21241											
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104173644	104173644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PSD	NM_001270965	exon6	c.A1435G	p.T479A	TCTGTGTCCAAGG	.	160	19	172	0	.	272	C	104173644	T	C	104173644	3	2	168	1	0	0	0	0	1	0	0	0	12646	1667	58	2	1691	2	PSD	10	104173644	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10		104173644	31361103	61	21242											
OR51E2	81285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4703454	4703454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	OR51E2	NM_030774	exon2	c.A488C	p.K163T	AGCCGCTTGATCA	.	97	24	70	0	.	502	G	4703454	T	G	4703454	3	3	168	1	0	0	0	0	1	0	0	0	11095	1609	56	5	478	5	OR51E2	11	4703454	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10		4703454	130303062	62	21243											
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6265537	6265537	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CNGA4	NM_001037329	exon6	c.C1626T	p.P542P	AATGCCCGAGGAC	.	57	20	64	0	.	91	T	6265537	C	T	6265537	2	4	168	1	0	0	0	0	0	0	0	1	3599	639	23	1		1	CNGA4	11	6265537	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	1562083	6265537	128740979	63	21244											
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597509	36597509	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	RAG1	NM_000448	exon2	c.G2655A	p.L885L	GGAGCTGATGGAT	.	74	29	60	0	.	230	A	36597509	G	A	36597509	2	1	168	1	0	0	0	0	0	0	0	1	13003	1277	45	3		3	RAG1	11	36597509	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	30331972	36597509	98409007	64	21245											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136207	40136207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LRRC4C	NM_001258419	exon7	c.A1636G	p.I546V	AGAAAATGACCAG	.	93	24	99	0	.	521	C	40136207	T	C	40136207	3	2	168	1	0	0	0	0	1	0	0	0	9008	1464	51	2	290	2	LRRC4C	11	40136207	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	3538698	40136207	94870309	65	21246											
SYT7	9066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61323666	61323666	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	SYT7	NM_001252065	exon2	c.C45T	p.R15R	GACGTCGCGCGAG	.	85	20	78	0	.	94	A	61323666	G	A	61323666	2	1	168	1	0	0	0	0	0	0	0	1	15476	1074	38	1		1	SYT7	11	61323666	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	21187459	61323666	73682850	66	21247											
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	94823277	94823277	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ENDOD1	NM_015036	exon1	c.T186G	p.A62A	GGGTGCTGAGCGC	.	100	29	76	0	.	68	G	94823277	T	G	94823277	2	3	168	1	0	0	0	0	0	0	0	1	5114	1567	55	5		5	ENDOD1	11	94823277	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	33499611	94823277	40183239	67	21248											
PPP2R1B	5519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111636082	111636082	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PPP2R1B	NM_001177562	exon2	c.A141G	p.L47L	TGTTGATAACTTC	.	101	17	111	0	.	658	C	111636082	T	C	111636082	2	2	168	1	0	0	0	0	0	0	0	1	12383	1403	49	2		2	PPP2R1B	11	111636082	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	16812805	111636082	23370434	68	21249											
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7244239	7244239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	.	.	.	.	CTGCCCTGCAGAA	.	95	35	75	0	.	.	C	7244239	T	C	7244239	3	2	168	1	0	0	0	0	1	0	0	0	1972	1579	55	2	1796	2	C1R	12	7244239	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10		7244239	126607656	69	21250											
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	12483617	12483617	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MANSC1	NM_018050	exon4	c.G640T	p.E214X	CTATTTCTTGATC	.	94	32	90	0	.	90	A	12483617	C	A	12483617	4	1	168	1	0	0	0	0	0	1	0	0	9224	922	32	3	659	3	MANSC1	12	12483617	Nonsense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	5239378	12483617	121368278	70	21251											
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	19285332	19285332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PLEKHA5	NM_001143821	exon3	c.C175T	p.P59S	GATTTGCCTACTG	.	99	24	98	0	.	227	T	19285332	C	T	19285332	3	4	168	1	0	0	0	0	1	0	0	0	12059	739	26	3	185	3	PLEKHA5	12	19285332	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	6801715	19285332	114566563	71	21252											
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52635403	52635403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	KRT7	NM_005556	exon5	c.G841A	p.A281T	GCTGAAGCCTGGT	.	57	12	61	0	.	90	A	52635403	G	A	52635403	3	1	168	1	0	0	0	0	1	0	0	0	8483	971	34	3	859	3	KRT7	12	52635403	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	33350071	52635403	81216492	72	21253											
TSPAN8	7103	broad.mit.edu;ucsc.edu	37	12	71537963	71537963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TSPAN8	NM_004616	exon3	c.A91G	p.I31V	CCCATATTGCTAA	.	33	4	39	0	.	93	C	71537963	T	C	71537963	3	2	168	1	0	0	0	0	1	0	0	0	16650	1493	52	2	650	2	TSPAN8	12	71537963	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	18902560	71537963	62313932	73	21254											
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112481516	112481516	+	Silent	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	NAA25	NM_024953	exon18	c.C2163G	p.S721S	CCGGGAGGATACC	.	72	26	91	0	.	155	C	112481516	G	C	112481516	2	2	168	1	0	0	0	0	0	0	0	1	10121	987	35	4		4	NAA25	12	112481516	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	40943553	112481516	21370379	74	21255											
RIMBP2	23504	broad.mit.edu;bcgsc.ca	37	12	130935855	130935855	+	Missense_Mutation	SNP	G	G	A	rs113895223	byfrequency	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	RIMBP2	NM_015347	exon5	c.C338T	p.A113V	CCGATCGCAGAGC	.	77	25	100	1	G|0.500;A|0.500	142	A	130935855	G	A	130935855	3	1	168	1	0	0	0	0	1	0	0	0	13363	1087	38	1	2880	1	RIMBP2	12	130935855	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	18454339	130935855	2916040	75	21256											
ANKLE2	23141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133319812	133319812	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ANKLE2	NM_015114	exon6	c.A1281C	p.V427V	GTTGACTACATCT	.	84	18	89	0	.	68	G	133319812	T	G	133319812	2	3	168	1	0	0	0	0	0	0	0	1	633	1509	53	5		5	ANKLE2	12	133319812	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	2383957	133319812	532083	76	21257											
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25842077	25842077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MTMR6	NM_004685	exon3	c.A144G	p.I48M	GTGTAATATCTAC	.	86	18	63	0	.	94	C	25842077	T	C	25842077	3	2	168	1	0	0	0	0	1	0	0	0	9947	1396	49	2	1769	2	MTMR6	13	25842077	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10		25842077	89327801	77	21258											
C14orf28	122525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45373642	45373642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	C14orf28	NM_001017923	exon4	c.G659C	p.G220A	GCCATGGGGCACC	.	93	28	104	0	.	91	C	45373642	G	C	45373642	3	2	168	1	0	0	0	0	1	0	0	0	1770	1232	43	4	669	4	C14orf28	14	45373642	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10		45373642	61975898	78	21259											
C14orf183	196913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50550627	50550627	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	C14orf183	NM_001014830	exon5	c.A717G	p.T239T	CCCACCTGTGGGG	.	160	45	133	0	.	90	C	50550627	T	C	50550627	2	2	168	1	0	0	0	0	0	0	0	1	1766	1567	55	2		2	C14orf183	14	50550627	Silent	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	5176985	50550627	56798913	79	21260											
FUT8	2530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	66082780	66082780	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	FUT8	NM_178155	exon4	c.G288A	p.Q96Q	AGAACAGATTGAA	.	139	43	141	0	.	91	A	66082780	G	A	66082780	2	1	168	1	0	0	0	0	0	0	0	1	6110	933	33	3		3	FUT8	14	66082780	Silent	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	15532153	66082780	41266760	80	21261											
GPR132	29933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105518034	105518034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	GPR132	NM_013345	exon4	c.C440T	p.A147V	TCCAGCGCGTACA	.	123	33	108	0	.	92	A	105518034	G	A	105518034	3	1	168	1	0	0	0	0	1	0	0	0	6642	1087	38	1	706	1	GPR132	14	105518034	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	39435254	105518034	1831506	81	21262											
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83932609	83932609	+	Missense_Mutation	SNP	C	C	G	rs144958076	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	BNC1	NM_001717	exon4	c.G1394C	p.G465A	GGTTGGCCTTTGG	.	142	43	151	0	C|1.000;A|0.000	93	G	83932609	C	G	83932609	3	3	168	1	0	0	0	0	1	0	0	0	1474	739	26	4	1598	4	BNC1	15	83932609	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		83932609	18598783	82	21263											
ABAT	18	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	8866725	8866725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ABAT	NM_001127448	exon12	c.A905G	p.N302S	GAGACAACCACGC	.	96	21	94	0	.	91	G	8866725	A	G	8866725	3	3	168	1	0	0	0	0	1	0	0	0	27	43	2	2	947	2	ABAT	16	8866725	Missense_Mutation	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10		8866725	81488028	83	21264											
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	28995279	28995279	+	Splice_Site	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	SPNS1	NM_032038	exon11	c.1492+1G>A	.	TGCAGGGTCAGTT	.	18	6	11	0	.	90	A	28995279	G	A	28995279	5	1	168	1	0	0	0	0	0	0	1	0	15073	1275	44	3	1535	3	SPNS1	16	28995279	Splice_Site	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	20128554	28995279	61359474	84	21265											
CES2	8824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	66976600	66976600	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CES2	NM_003869	exon10	c.G1524A	p.W508X	CAGCTGGCTCAAG	.	87	21	90	0	.	90	A	66976600	G	A	66976600	4	1	168	1	0	0	0	0	0	1	0	0	3270	1212	42	3	1562	3	CES2	16	66976600	Nonsense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	37981321	66976600	23378153	85	21266											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70902688	70902688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	HYDIN	NM_001270974	exon66	c.G11095T	p.G3699C	GGTGGCCCATCTA	.	40	14	47	0	.	92	A	70902688	C	A	70902688	3	1	168	1	0	0	0	0	1	0	0	0	7467	623	22	3	4354	3	HYDIN	16	70902688	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	3926088	70902688	19452065	86	21267											
WFDC1	58189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84358060	84358060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	WFDC1	NM_021197	exon5	c.T598C	p.Y200H	AAAGAATATCCAG	.	79	23	83	0	.	153	C	84358060	T	C	84358060	3	2	168	1	0	0	0	0	1	0	0	0	17343	1406	49	2	616	2	WFDC1	16	84358060	Missense_Mutation	SNP	T	TCGA-KR-A7K0-01A-12D-A33Q-10	13455372	84358060	5996693	87	21268											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7636408	7636408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DNAH2	NM_020877	exon4	c.C403A	p.Q135K	CAGACCCAGAACC	.	67	26	71	0	.	102	A	7636408	C	A	7636408	3	1	168	1	0	0	0	0	1	0	0	0	4602	595	21	3	417	3	DNAH2	17	7636408	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		7636408	73558802	88	21269											
TLK2	11011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60637386	60637386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TLK2	NM_006852	exon10	c.G730A	p.D244N	AACTGTGATTTGA	.	450	116	442	0	.	464	A	60637386	G	A	60637386	3	1	168	1	0	0	0	0	1	0	0	0	15941	1290	45	3	764	3	TLK2	17	60637386	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	53000978	60637386	20557824	89	21270											
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987600	61987600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CSHL1	NM_022579	exon4	c.C393A	p.N131K	CACCAGGTTGTTG	.	141	19	137	0	.	90	T	61987600	G	T	61987600	3	4	168	1	0	0	0	0	1	0	0	0	3942	1252	44	3	283	3	CSHL1	17	61987600	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	1350214	61987600	19207610	90	21271											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65116628	65116628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	HELZ	NM_014877	exon27	c.G3731T	p.G1244V	CCTCGTCCATGTG	.	197	45	147	0	.	92	A	65116628	C	A	65116628	3	1	168	1	0	0	0	0	1	0	0	0	7049	855	30	3	2125	3	HELZ	17	65116628	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	3129028	65116628	16078582	91	21272											
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74625607	74625607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ST6GALNAC1	NM_018414	exon2	c.G318T	p.Q106H	CGGTGCCTGGTTG	.	170	47	167	0	.	90	A	74625607	C	A	74625607	3	1	168	1	0	0	0	0	1	0	0	0	15222	680	24	3	1516	3	ST6GALNAC1	17	74625607	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	9508979	74625607	6569603	92	21273											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3067314	3067314	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MYOM1	NM_003803	exon38	c.G5004A	p.E1668E	CGCCTCCTCCTCT	.	110	25	106	0	.	94	T	3067314	C	T	3067314	2	4	168	1	0	0	0	0	0	0	0	1	10091	680	24	3		3	MYOM1	18	3067314	Silent	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		3067314	75009934	93	21274											
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3908298	3908298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ATCAY	NM_033064	exon6	c.G577A	p.V193I	ATCATCGTCTTCG	.	201	59	209	0	.	67	A	3908298	G	A	3908298	3	1	168	1	0	0	0	0	1	0	0	0	1077	1145	40	1	595	1	ATCAY	19	3908298	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10		3908298	55220685	94	21275											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074794	9074794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MUC16	NM_024690	exon3	c.C12652T	p.P4218S	TGGGAGGTAAACT	.	128	31	141	0	.	566	A	9074794	G	A	9074794	3	1	168	1	0	0	0	0	1	0	0	0	9973	1261	44	3	31199	3	MUC16	19	9074794	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	5166496	9074794	50054189	95	21276											
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14271099	14271099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LPHN1	NM_001008701	exon9	c.G1640A	p.G547E	TTCTCCCCACTCT	.	64	22	80	0	.	523	T	14271099	C	T	14271099	3	4	168	1	0	0	0	0	1	0	0	0	8915	623	22	3	2848	3	LPHN1	19	14271099	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	5196305	14271099	44857884	96	21277											
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16918475	16918475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	NWD1	NM_001007525	exon18	c.C3815T	p.T1272M	TATTTACGGGCCT	.	142	34	100	0	.	7	T	16918475	C	T	16918475	3	4	168	1	0	0	0	0	1	0	0	0	10781	536	19	1	3464	1	NWD1	19	16918475	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	2647376	16918475	42210508	97	21278											
KIAA0355	9710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34791601	34791601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	KIAA0355	NM_014686	exon2	c.G223T	p.D75Y	ATCGCCGACATCC	.	68	19	70	1	.	91	T	34791601	G	T	34791601	3	4	168	1	0	0	0	0	1	0	0	0	8170	1058	37	1	225	1	KIAA0355	19	34791601	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	17873126	34791601	24337382	98	21279											
LRFN3	79414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36431219	36431219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LRFN3	NM_024509	exon2	c.G892A	p.V298M	CCCGTGGTGACTC	.	25	7	28	0	.	90	A	36431219	G	A	36431219	3	1	168	1	0	0	0	0	1	0	0	0	8939	1261	44	3	894	3	LRFN3	19	36431219	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	1639618	36431219	22697764	99	21280											
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45856053	45856053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	ERCC2,NS,carcinoma,-1	ERCC2	NM_000400	exon20	c.T1853G	p.V618G	ATGATGACGGCCC	.	67	18	80	0	.	848	C	45856053	A	C	45856053	3	2	168	1	0	0	0	0	1	0	0	0	5213	275	10	5	445	5	ERCC2	19	45856053	Missense_Mutation	SNP	A	TCGA-KR-A7K0-01A-12D-A33Q-10	9424834	45856053	13272930	100	21281											
CCDC8	83987	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46915578	46915578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CCDC8	NM_032040	exon1	c.C490T	p.P164S	CGCTGGGCTGCTT	.	31	8	24	0	.	93	A	46915578	G	A	46915578	3	1	168	1	0	0	0	0	1	0	0	0	2853	1203	42	3	1130	3	CCDC8	19	46915578	Missense_Mutation	SNP	G	TCGA-KR-A7K0-01A-12D-A33Q-10	1059525	46915578	12213405	101	21282											
ZSCAN5A	79149	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56735000	56735000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ZSCAN5A	NM_024303	exon3	c.G588C	p.Q196H	ACTCACCTGCCTC	.	48	8	48	0	.	155	G	56735000	C	G	56735000	3	3	168	1	0	0	0	0	1	0	0	0	18235	695	24	4	914	4	ZSCAN5A	19	56735000	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10	9819422	56735000	2393983	102	21283											
PAX1	5075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21687274	21687274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PAX1	NM_006192	exon2	c.C485T	p.P162L	TTCTGCCCGGGGC	.	52	20	42	0	.	227	T	21687274	C	T	21687274	3	4	168	1	0	0	0	0	1	0	0	0	11478	623	22	3	491	3	PAX1	20	21687274	Missense_Mutation	SNP	C	TCGA-KR-A7K0-01A-12D-A33Q-10		21687274	41338246	103	21284											
XPNPEP3	63929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41320402	41320416	+	In_Frame_Del	DEL	TACCTCGGGATGGAT	TACCTCGGGATGGAT	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	TACCTCGGGATGGAT	TACCTCGGGATGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	XPNPEP3	NM_022098	exon9	c.1273_1287del	p.425_429del	GGCCACTACCTCG	.	102	20	131	0	.	68	-	41320416	TACCTCGGGATGGAT	-	41320402	7	5	168	1	0	1	0	1	0	0	0	0	17441	1522	53	0	1307	0	XPNPEP3	22	41320402	In_Frame_Del	DEL	TACCTCGGGATGGAT	TCGA-KR-A7K0-01A-12D-A33Q-10		41320402	9984164	104	21285											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50728375	50728379	+	Frame_Shift_Del	DEL	GGTGG	GGTGG	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GGTGG	GGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PLXNB2	NM_012401	exon3	c.635_639del	p.212_213del	TGTGTTGGTGGAC	.	71	16	106	0	.	211	-	50728379	GGTGG	-	50728375	7	5	168	1	0	1	0	1	0	0	0	0	12124	1335	47	0	5017	0	PLXNB2	22	50728375	Frame_Shift_Del	DEL	GGTGG	TCGA-KR-A7K0-01A-12D-A33Q-10	9407973	50728375	576191	105	21286	127	2									
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50728381	50728387	+	Frame_Shift_Del	DEL	CAGGTAG	CAGGTAG	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	CAGGTAG	CAGGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PLXNB2	NM_012401	exon3	c.627_633del	p.209_211del	GGTGGACAGGTAG	.	66	15	109	0	.	211	-	50728387	CAGGTAG	-	50728381	7	5	168	1	0	1	0	1	0	0	0	0	12124	465	17	0	5023	0	PLXNB2	22	50728381	Frame_Shift_Del	DEL	CAGGTAG	TCGA-KR-A7K0-01A-12D-A33Q-10	6	50728381	576185	106	21287	127	2									
PLOD1	5351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12023642	12023642	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PLOD1	NM_000302	exon11	c.A1151C	p.D384A	ATGCTGACGTGGC	.	49	12	61	0	.	155	C	12023642	A	C	12023642	3	2	169	1	0	0	0	0	1	0	0	0	12101	275	10	5	1193	5	PLOD1	1	12023642	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10		12023642	237226979	1	21288											
NCDN	23154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36024726	36024726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NCDN	NM_001014839	exon3	c.A52T	p.M18L	AGCATCATGGCCT	.	138	68	166	0	.	155	T	36024726	A	T	36024726	3	4	169	1	0	0	0	0	1	0	0	0	10214	217	8	4	58	4	NCDN	1	36024726	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	24001084	36024726	213225895	2	21289											
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89726418	89726419	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GBP5	NM_052942	exon12	c.1729_1730del	p.577_577del	TTATTAACAGTCC	.	50	15	52	0	.	91	-	89726419	AC	-	89726418	7	5	169	1	0	1	0	1	0	0	0	0	6277	43	2	0	34	0	GBP5	1	89726418	Frame_Shift_Del	DEL	AC	TCGA-KR-A7K2-01A-12D-A33Q-10	53701692	89726418	159524203	3	21290											
CAPZA1	829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113212621	113212621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CAPZA1	NM_006135	exon10	c.T728G	p.I243S	CAGCAATTAGTGA	.	125	62	142	0	.	514	G	113212621	T	G	113212621	3	3	169	1	0	0	0	0	1	0	0	0	2640	1493	52	5	766	5	CAPZA1	1	113212621	Missense_Mutation	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	23486203	113212621	136038000	4	21291											
XPR1	9213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180794056	180794056	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	XPR1	NM_004736	exon8	c.T931C	p.L311L	AGCAATTTGTCTC	.	111	16	53	0	.	90	C	180794056	T	C	180794056	2	2	169	1	0	0	0	0	0	0	0	1	17448	1838	64	2		2	XPR1	1	180794056	Silent	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	67581435	180794056	68456565	5	21292											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237670087	237670087	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RYR2	NM_001035	exon23	c.A2691G	p.K897K	GAATAAAATTGAG	.	86	25	40	0	.	158	G	237670087	A	G	237670087	2	3	169	1	0	0	0	0	0	0	0	1	13769	11	1	2		2	RYR2	1	237670087	Silent	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	56876031	237670087	11580534	6	21293											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9994549	9994563	+	Frame_Shift_Del	DEL	CGGTAAGTCACAAGT	CGGTAAGTCACAAGT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CGGTAAGTCACAAGT	CGGTAAGTCACAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TAF1B	NM_005680	exon5	c.398_399del	p.133_133del	AACCTACGGTAAG	.	82	11	94	0	.	92	-	9994563	CGGTAAGTCACAAGT	-	9994549	7	5	169	1	0	1	0	1	0	0	0	0	15517	550	19	0	416	0	TAF1B	2	9994549	Frame_Shift_Del	DEL	CGGTAAGTCACAAGT	TCGA-KR-A7K2-01A-12D-A33Q-10		9994549	233204824	7	21294											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11738866	11738866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GREB1	NM_014668	exon15	c.A2213G	p.Y738C	AACAGTATGTTCT	.	67	17	70	0	.	91	G	11738866	A	G	11738866	3	3	169	1	0	0	0	0	1	0	0	0	6760	449	16	2	2375	2	GREB1	2	11738866	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	1744317	11738866	231460507	8	21295											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21229489	21229489	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	APOB	NM_000384	exon26	c.C10251A	p.T3417T	TTTCGTGGTTAAG	.	58	14	61	0	.	175	T	21229489	G	T	21229489	2	4	169	1	0	0	0	0	0	0	0	1	785	1335	47	3		3	APOB	2	21229489	Silent	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	9490623	21229489	221969884	9	21296											
PAPOLG	64895	broad.mit.edu;bcgsc.ca	37	2	61014136	61014136	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PAPOLG	NM_022894	exon14	c.T1221C	p.N407N	ACGGAATGAATTT	.	99	7	115	0	.	69	C	61014136	T	C	61014136	2	2	169	1	0	0	0	0	0	0	0	1	11431	1461	51	2		2	PAPOLG	2	61014136	Silent	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	39784647	61014136	182185237	10	21297											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99012595	99012595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CNGA3	NM_001298	exon8	c.A962G	p.Y321C	GCATCTACTTTGC	.	82	50	105	0	.	96	G	99012595	A	G	99012595	3	3	169	1	0	0	0	0	1	0	0	0	3598	391	14	2	988	2	CNGA3	2	99012595	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	37998459	99012595	144186778	11	21298											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168108386	168108386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	XIRP2	NM_152381	exon9	c.G10484T	p.G3495V	GCCTGGGATATGC	.	52	15	76	0	.	104	T	168108386	G	T	168108386	3	4	169	1	0	0	0	0	1	0	0	0	17427	1174	41	3	10514	3	XIRP2	2	168108386	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	69095791	168108386	75090987	12	21299											
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169847362	169847362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ABCB11	NM_003742	exon9	c.C857T	p.S286L	ATTGATGAAATGA	.	47	22	64	0	.	139	A	169847362	G	A	169847362	3	1	169	1	0	0	0	0	1	0	0	0	42	1294	45	3	3188	3	ABCB11	2	169847362	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	1738976	169847362	73352011	13	21300											
VIL1	7429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219305556	219305556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	VIL1	NM_007127	exon19	c.C2341T	p.P781S	GAGCTCCCCGAGG	.	86	39	86	0	.	91	T	219305556	C	T	219305556	3	4	169	1	0	0	0	0	1	0	0	0	17161	623	22	3	2411	3	VIL1	2	219305556	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	49458194	219305556	23893817	14	21301											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882606	228882606	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SPHKAP	NM_030623	exon7	c.C2964T	p.S988S	GGTCCCGCTCCCC	.	48	14	77	0	.	167	A	228882606	G	A	228882606	2	1	169	1	0	0	0	0	0	0	0	1	15047	1078	38	1		1	SPHKAP	2	228882606	Silent	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	9577050	228882606	14316767	15	21302											
PER2	8864	ucsc.edu;bcgsc.ca	37	2	239161897	239161897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PER2	NM_022817	exon19	c.G2767A	p.A923T	AGAAGGCCTGGGG	.	51	5	57	0	.	154	T	239161897	C	T	239161897	3	4	169	1	0	0	0	0	1	0	0	0	11730	739	26	3	1020	3	PER2	2	239161897	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	10279291	239161897	4037476	16	21303											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108117574	108117574	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MYH15	NM_014981	exon36	c.G5103A	p.R1701R	CAGGGACCTTAGA	.	43	14	61	0	.	73	T	108117574	C	T	108117574	2	4	169	1	0	0	0	0	0	0	0	1	10034	506	18	3		3	MYH15	3	108117574	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		108117574	89904856	17	21304											
RUVBL1	8607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127831762	127831762	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RUVBL1	NM_003707	exon3	c.G330A	p.E110E	CAGCACCTCTGTC	.	59	11	120	0	.	227	T	127831762	C	T	127831762	2	4	169	1	0	0	0	0	0	0	0	1	13752	680	24	3		3	RUVBL1	3	127831762	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	19714188	127831762	70190668	18	21305											
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141497429	141497429	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GRK7	NM_139209	exon1	c.C303A	p.T101T	ACCCACCAAAGAC	.	68	20	94	0	.	522	A	141497429	C	A	141497429	2	1	169	1	0	0	0	0	0	0	0	1	6794	581	21	3		3	GRK7	3	141497429	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	13665667	141497429	56525001	19	21306											
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154055628	154055628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GPR149	NM_001038705	exon4	c.A2056G	p.N686D	AGATATTAATATC	.	113	60	91	0	.	96	C	154055628	T	C	154055628	3	2	169	1	0	0	0	0	1	0	0	0	6654	1754	61	2	143	2	GPR149	3	154055628	Missense_Mutation	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	12558199	154055628	43966802	20	21307											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39905761	39905761	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_001100399	exon12	c.A1284G	p.K428K	ACAGTATTTCTTA	.	56	32	48	0	.	.	C	39905761	T	C	39905761	2	2	169	1	0	0	0	0	0	0	0	1	11691	1490	52	2		2	PDS5A	4	39905761	Silent	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10		39905761	151248515	21	21308											
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46066470	46066470	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GABRG1	NM_173536	exon5	c.G613C	p.E205Q	AAAATTCCAGTGG	.	319	90	344	0	.	92	G	46066470	C	G	46066470	3	3	169	1	0	0	0	0	1	0	0	0	6171	864	30	4	804	4	GABRG1	4	46066470	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	6160709	46066470	145087806	22	21309											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55946235	55946235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KDR	NM_002253	exon30	c.A3944G	p.D1315G	GTGGTGTCTGTGT	.	91	44	129	0	.	2298	C	55946235	T	C	55946235	3	2	169	1	0	0	0	0	1	0	0	0	8139	1667	58	2	130	2	KDR	4	55946235	Missense_Mutation	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	9879765	55946235	135208041	23	21310											
NFKB1	4790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103518690	103518690	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NFKB1	NM_003998	exon15	c.A1509G	p.L503L	CTTTCTAGAGAAG	.	23	8	33	0	.	912	G	103518690	A	G	103518690	2	3	169	1	0	0	0	0	0	0	0	1	10375	407	15	2		2	NFKB1	4	103518690	Silent	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	47572455	103518690	87635586	24	21311											
INTS12	57117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106603913	106603913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	INTS12	NM_020395	exon8	c.G1366T	p.A456S	TTTGGGCAGCTTT	.	108	58	114	1	.	68	A	106603913	C	A	106603913	3	1	169	1	0	0	0	0	1	0	0	0	7777	710	25	3	26	3	INTS12	4	106603913	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	3085223	106603913	84550363	25	21312											
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19747162	19747162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CDH18	NM_001167667	exon4	c.C412A	p.P138T	CAAGAGGTTTGTT	.	106	54	105	0	.	159	T	19747162	G	T	19747162	3	4	169	1	0	0	0	0	1	0	0	0	3103	1261	44	3	2000	3	CDH18	5	19747162	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10		19747162	161168098	26	21313											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127744387	127744387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FBN2	NM_001999	exon8	c.C1058T	p.T353I	CCATCTGTTGAGG	.	271	107	221	0	.	146	A	127744387	G	A	127744387	3	1	169	1	0	0	0	0	1	0	0	0	5703	1377	48	3	7912	3	FBN2	5	127744387	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	107997225	127744387	53170873	27	21314											
RREB1	6239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7231437	7231437	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RREB1	NM_001003700	exon10	c.C3105A	p.L1035L	AGCCCTCCTGAGT	.	47	12	41	0	.	144	A	7231437	C	A	7231437	2	1	169	1	0	0	0	0	0	0	0	1	13679	842	30	3		3	RREB1	6	7231437	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		7231437	163883630	28	21315											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32163286	32163286	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NOTCH4	NM_004557	exon30	c.A5940G	p.S1980S	TTGAGGTGATCCC	.	61	7	84	0	.	1321	C	32163286	T	C	32163286	2	2	169	1	0	0	0	0	0	0	0	1	10551	1683	59	2		2	NOTCH4	6	32163286	Silent	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	24931849	32163286	138951781	29	21316											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139134461	139134461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ECT2L	NM_001195037	exon2	c.A50T	p.K17M	GCAACAAGTCATT	.	91	16	65	0	.	22	T	139134461	A	T	139134461	3	4	169	1	0	0	0	0	1	0	0	0	4902	72	3	4	52	4	ECT2L	6	139134461	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	106971175	139134461	31980606	30	21317											
C6orf120	387263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170102922	170102922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	C6orf120	NM_001029863	exon1	c.T367A	p.S123T	CACCCCTCCCACC	.	35	14	44	0	.	90	A	170102922	T	A	170102922	3	1	169	1	0	0	0	0	1	0	0	0	2324	1551	54	4	369	4	C6orf120	6	170102922	Missense_Mutation	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	30968461	170102922	1012145	31	21318											
RSPH10B	222967	broad.mit.edu;mdanderson.org	37	7	6797425	6797425	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RSPH10B	NM_173565	exon3	c.G117A	p.E39E	GCAAGAGATGTCC	.	226	26	196	0	.	23	A	6797425	G	A	6797425	2	1	169	1	0	0	0	0	0	0	0	1	13703	933	33	3		3	RSPH10B	7	6797425	Silent	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10		6797425	152341238	32	21319											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44555486	44555486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NPC1L1	NM_013389	exon19	c.T3793A	p.F1265I	AGAAGAAGATCTG	.	75	55	90	0	.	94	T	44555486	A	T	44555486	3	4	169	1	0	0	0	0	1	0	0	0	10571	72	3	4	294	4	NPC1L1	7	44555486	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	37758061	44555486	114583177	33	21320											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82451998	82451998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PCLO	NM_014510	exon20	c.G14604T	p.Q4868H	GGGAACCTGCATG	.	32	20	24	0	.	29	A	82451998	C	A	82451998	3	1	169	1	0	0	0	0	1	0	0	0	11583	680	24	3	865	3	PCLO	7	82451998	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	37896512	82451998	76686665	34	21321											
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114619638	114619638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MDFIC	NM_199072	exon4	c.G622C	p.G208R	AAGAACGGCCACA	.	156	19	150	0	.	91	C	114619638	G	C	114619638	3	2	169	1	0	0	0	0	1	0	0	0	9405	1116	39	4	678	4	MDFIC	7	114619638	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	32167640	114619638	44519025	35	21322											
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	131193749	131193751	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1060_1062del	p.354_354del	CTGCTTCTCACTC	.	148	19	165	0	.	136	-	131193751	CTC	-	131193749	7	5	169	1	0	1	0	1	0	0	0	0	12180	912	32	0	634	0	PODXL	7	131193749	In_Frame_Del	DEL	CTC	TCGA-KR-A7K2-01A-12D-A33Q-10	16574111	131193749	27944914	36	21323	128	2									
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	131193753	131193756	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTCT	CTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1055_1058del	p.352_353del	TTCTCACTCTGTG	.	146	0	166	0	.	136	-	131193756	CTCT	-	131193753	7	5	169	1	0	1	0	1	0	0	0	0	12180	565	20	0	638	0	PODXL	7	131193753	Frame_Shift_Del	DEL	CTCT	TCGA-KR-A7K2-01A-12D-A33Q-10	4	131193753	27944910	37	21324	128	2									
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24157559	24157559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ADAM28	NM_014265	exon2	c.A119G	p.H40R	CACTGCATAAAAG	.	23	17	28	0	.	228	G	24157559	A	G	24157559	3	3	169	1	0	0	0	0	1	0	0	0	246	217	8	2	125	2	ADAM28	8	24157559	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10		24157559	122206463	38	21325											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61654307	61654307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CHD7	NM_017780	exon2	c.C316T	p.H106Y	CAGTATCACACCC	.	119	29	82	0	.	141	T	61654307	C	T	61654307	3	4	169	1	0	0	0	0	1	0	0	0	3330	826	29	3	318	3	CHD7	8	61654307	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	37496748	61654307	84709715	39	21326											
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100883103	100883103	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	VPS13B	NM_017890	exon60	c.T11558G	p.V3853G	GCCATGTCAAATA	.	345	73	176	0	.	301	G	100883103	T	G	100883103	3	3	169	1	0	0	0	0	1	0	0	0	17187	1667	58	5	11986	5	VPS13B	8	100883103	Missense_Mutation	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10	39228796	100883103	45480919	40	21327											
TMEM71	137835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133734323	133734323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TMEM71	NM_144649	exon7	c.C658G	p.L220V	CAAGCAGGATTGC	.	710	308	415	1	.	92	C	133734323	G	C	133734323	3	2	169	1	0	0	0	0	1	0	0	0	16197	991	35	4	188	4	TMEM71	8	133734323	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	32851220	133734323	12629699	41	21328											
PSCA	8000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	143763524	143763524	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_005672	exon3	c.C319T	p.L107L	GGCCTGCTGCTCT	.	40	8	12	0	.	.	T	143763524	C	T	143763524	2	4	169	1	0	0	0	0	0	0	0	1	12645	796	28	3		3	PSCA	8	143763524	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	10029201	143763524	2600498	42	21329											
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	124065340	124065340	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GSN	NM_000177	exon3	c.C501G	p.Y167X	GAAGTACAAGGTG	.	38	10	27	0	.	154	G	124065340	C	G	124065340	4	3	169	1	0	0	0	0	0	1	0	0	6825	489	17	4	539	4	GSN	9	124065340	Nonsense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		124065340	17148091	43	21330											
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18289660	18289660	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SLC39A12	NM_001145195	exon11	c.T1665C	p.D555D	TGCAGATGGCCTA	.	62	32	78	0	.	154	C	18289660	T	C	18289660	2	2	169	1	0	0	0	0	0	0	0	1	14615	1461	51	2		2	SLC39A12	10	18289660	Silent	SNP	T	TCGA-KR-A7K2-01A-12D-A33Q-10		18289660	117245087	44	21331											
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49447719	49447719	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FRMPD2	NM_001018071	exon7	c.G717T	p.T239T	GGTCTCCGTGCTT	.	45	21	49	0	.	153	A	49447719	C	A	49447719	2	1	169	1	0	0	0	0	0	0	0	1	6058	639	23	1		1	FRMPD2	10	49447719	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	31158059	49447719	86087028	45	21332											
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069106	89069106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NOX4	NM_016931	exon17	c.T1523G	p.I508S	TCTCCAATTATCT	.	219	116	196	0	.	515	C	89069106	A	C	89069106	3	2	169	1	0	0	0	0	1	0	0	0	10558	101	4	5	221	5	NOX4	11	89069106	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10		89069106	45937410	46	21333											
NCKAP5L	57701	ucsc.edu;bcgsc.ca	37	12	50190423	50190423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NCKAP5L	NM_001037806	exon8	c.G1220A	p.S407N	AACATGCTAAGGA	.	20	4	20	0	.	68	T	50190423	C	T	50190423	3	4	169	1	0	0	0	0	1	0	0	0	10224	797	28	3	2808	3	NCKAP5L	12	50190423	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		50190423	83661472	47	21334											
GNPNAT1	64841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	53245074	53245074	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GNPNAT1	NM_198066	exon6	c.T510C	p.Y170Y	TACAGTATATCCA	.	179	10	167	0	.	90	G	53245074	A	G	53245074	2	3	169	1	0	0	0	0	0	0	0	1	6544	456	16	2		2	GNPNAT1	14	53245074	Silent	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10		53245074	54104466	48	21335											
CATSPER2	117155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43924421	43924421	+	Missense_Mutation	SNP	G	G	T	rs148790135	alternate_allele	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CATSPER2	NM_172095	exon12	c.C1537A	p.R513S	TCTTACGTTCCTC	.	59	35	80	0	G|1.000;A|0.000	91	T	43924421	G	T	43924421	3	4	169	1	0	0	0	0	1	0	0	0	2688	1145	40	1	63	1	CATSPER2	15	43924421	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10		43924421	58606971	49	21336											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16139804	16139804	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ABCC1	NM_004996	exon9	c.C1152T	p.Y384Y	CCAGTACTTCCAC	.	101	12	86	0	.	94	T	16139804	C	T	16139804	2	4	169	1	0	0	0	0	0	0	0	1	49	576	20	3		3	ABCC1	16	16139804	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		16139804	74214949	50	21337											
MLKL	197259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74708937	74708937	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MLKL	NM_152649	exon10	c.T1302G	p.G434G	GTCTTCACCCAGT	.	128	53	92	0	.	561	C	74708937	A	C	74708937	2	2	169	1	0	0	0	0	0	0	0	1	9619	146	6	5		5	MLKL	16	74708937	Silent	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	58569133	74708937	15645816	51	21338											
MNT	4335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2290484	2290484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MNT	NM_020310	exon6	c.C1460A	p.P487H	CCAATGGGGGGTG	.	32	11	37	0	.	227	T	2290484	G	T	2290484	3	4	169	1	0	0	0	0	1	0	0	0	9678	1232	43	3	292	3	MNT	17	2290484	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10		2290484	78904726	52	21339											
KRTAP9-2	83899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39383271	39383271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KRTAP9-2	NM_031961	exon1	c.A365G	p.Y122C	GCTACTACCCCAC	.	131	70	140	0	.	23	G	39383271	A	G	39383271	3	3	169	1	0	0	0	0	1	0	0	0	8573	391	14	2	367	2	KRTAP9-2	17	39383271	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	37092787	39383271	41811939	53	21340											
FBF1	85302	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73914085	73914085	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FBF1	NM_001080542	exon21	c.C2268T	p.R756R	CTCCACGCGGGAG	.	37	12	52	1	.	205	A	73914085	G	A	73914085	2	1	169	1	0	0	0	0	0	0	0	1	5695	1074	38	1		1	FBF1	17	73914085	Silent	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	34530814	73914085	7281125	54	21341											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	8143692	8143692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PTPRM	NM_001105244	exon14	c.C2215T	p.H739Y	ACAGACCATACAG	.	81	22	68	0	.	228	T	8143692	C	T	8143692	3	4	169	1	0	0	0	0	1	0	0	0	12806	594	21	3	2269	3	PTPRM	18	8143692	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		8143692	69933556	55	21342											
PTBP1	5725	broad.mit.edu;bcgsc.ca	37	19	808555	808555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PTBP1	NM_002819	exon13	c.A1256G	p.H419R	TGAGCCACCTGAA	.	91	6	51	1	.	227	G	808555	A	G	808555	3	3	169	1	0	0	0	0	1	0	0	0	12725	159	6	2	1306	2	PTBP1	19	808555	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10		808555	58320428	56	21343											
DENND1C	79958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6472968	6472968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DENND1C	NM_024898	exon15	c.G1090C	p.A364P	TCTGGGCCAAGAA	.	35	6	29	0	.	67	G	6472968	C	G	6472968	3	3	169	1	0	0	0	0	1	0	0	0	4428	739	26	4	1351	4	DENND1C	19	6472968	Missense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	5664413	6472968	52656015	57	21344											
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35449077	35449077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_175872	exon4	c.C1682T	p.P561L	TCGTAAGGCCTGT	.	173	75	148	0	.	.	A	35449077	G	A	35449077	3	1	169	1	0	0	0	0	1	0	0	0	18161	1000	35	3	220	3	ZNF792	19	35449077	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10	28976109	35449077	23679906	58	21345											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62659867	62659867	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PRPF6	NM_012469	exon18	c.G2376A	p.L792L	GGGGCTGAAGAAC	.	40	14	44	0	.	70	A	62659867	G	A	62659867	2	1	169	1	0	0	0	0	0	0	0	1	12574	1277	45	3		3	PRPF6	20	62659867	Silent	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10		62659867	365653	59	21346											
MORC3	23515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	37736428	37736428	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MORC3	NM_015358	exon14	c.C1490A	p.S497X	CTCTTTCAACTCC	.	84	32	82	0	.	92	A	37736428	C	A	37736428	4	1	169	1	0	0	0	0	0	1	0	0	9703	838	29	3	1544	3	MORC3	21	37736428	Nonsense_Mutation	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10		37736428	10393467	60	21347											
TYMP	1890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50968105	50968105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TYMP	NM_001257989	exon2	c.C34T	p.P12S	CGGGTGGGGCCCC	.	57	27	110	0	.	23	A	50968105	G	A	50968105	3	1	169	1	0	0	0	0	1	0	0	0	16808	1232	43	3	1450	3	TYMP	22	50968105	Missense_Mutation	SNP	G	TCGA-KR-A7K2-01A-12D-A33Q-10		50968105	336461	61	21348											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32486815	32486815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DMD	NM_004006	exon23	c.T2962C	p.S988P	GCAGAGAACTTTG	.	140	115	124	0	.	265	G	32486815	A	G	32486815	3	3	169	1	0	0	0	0	1	0	0	0	4580	246	9	2	8566	2	DMD	23	32486815	Missense_Mutation	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10		32486815	122783745	62	21349											
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100086583	100086583	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CSTF2	NM_001325	exon9	c.A969G	p.G323G	GTTAGGAGATGCT	.	72	35	68	0	.	131	G	100086583	A	G	100086583	2	3	169	1	0	0	0	0	0	0	0	1	3984	291	11	2		2	CSTF2	23	100086583	Silent	SNP	A	TCGA-KR-A7K2-01A-12D-A33Q-10	67599768	100086583	55183977	63	21350											
FAM127A	8933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134166686	134166686	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FAM127A	NM_001078171	exon1	c.C273A	p.L91L	CCTCCTCAATGAT	.	129	50	136	0	.	130	A	134166686	C	A	134166686	2	1	169	1	0	0	0	0	0	0	0	1	5431	813	29	3		3	FAM127A	23	134166686	Silent	SNP	C	TCGA-KR-A7K2-01A-12D-A33Q-10	34080103	134166686	21103874	64	21351											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	14105088	14105088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PRDM2	NM_015866	exon8	c.G798T	p.L266F	TGATTTGGGGGAA	.	131	8	174	0	.	116	T	14105088	G	T	14105088	3	4	170	1	0	0	0	0	1	0	0	0	12458	1339	47	3	824	3	PRDM2	1	14105088	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		14105088	235145533	1	21352											
MAP7D1	55700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	36638161	36638161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAP7D1	NM_018067	exon4	c.G557A	p.R186H	AGCAACGTCTTAA	.	213	17	326	0	.	138	A	36638161	G	A	36638161	3	1	170	1	0	0	0	0	1	0	0	0	9267	1145	40	1	571	1	MAP7D1	1	36638161	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	22533073	36638161	212612460	2	21353											
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114483116	114483116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HIPK1	NM_198268	exon2	c.T111A	p.S37R	ACAGAGTAGCAAC	.	69	17	121	0	.	361	A	114483116	T	A	114483116	3	1	170	1	0	0	0	0	1	0	0	0	7116	1635	57	4	113	4	HIPK1	1	114483116	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	77844955	114483116	134767505	3	21354											
OR10J1	26476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	159410510	159410510	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR10J1	NM_012351	exon1	c.G962A	p.X321X	TTTCCTGACCATG	.	42	25	40	0	.	69	A	159410510	G	A	159410510	2	1	170	1	0	0	0	0	0	0	0	1	10910	1285	45	3		3	OR10J1	1	159410510	Silent	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	44927394	159410510	89840111	4	21355											
SFXN5	94097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73195621	73195621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SFXN5	NM_144579	exon12	c.G783A	p.M261I	GATGGGCATGGGC	.	248	68	273	1	.	91	T	73195621	C	T	73195621	3	4	170	1	0	0	0	0	1	0	0	0	14198	710	25	3	251	3	SFXN5	2	73195621	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		73195621	170003752	5	21356											
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88383836	88383836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SMYD1	NM_198274	exon2	c.C139T	p.L47F	TCCAGCCTTGTTA	.	119	54	109	0	.	229	T	88383836	C	T	88383836	3	4	170	1	0	0	0	0	1	0	0	0	14821	695	24	3	145	3	SMYD1	2	88383836	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	15188215	88383836	154815537	6	21357											
SCN7A	6332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167273323	167273323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SCN7A	NM_002976	exon20	c.A3308C	p.N1103T	CTCTTATTCATGA	.	306	124	298	2	.	67	G	167273323	T	G	167273323	3	3	170	1	0	0	0	0	1	0	0	0	13923	1493	52	5	1764	5	SCN7A	2	167273323	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	78889487	167273323	75926050	7	21358											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230668295	230668295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TRIP12	NM_004238	exon19	c.G2765A	p.R922K	TCTCTTCTGAAGT	.	158	67	150	0	.	572	T	230668295	C	T	230668295	3	4	170	1	0	0	0	0	1	0	0	0	16553	913	32	3	3305	3	TRIP12	2	230668295	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	63394972	230668295	12531078	8	21359											
MAP4	4134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47958322	47958322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAP4	NM_001134364	exon7	c.A995C	p.K332T	ACATTCTTGGCTG	.	70	17	98	0	.	93	G	47958322	T	G	47958322	3	3	170	1	0	0	0	0	1	0	0	0	9258	1609	56	5	3874	5	MAP4	3	47958322	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10		47958322	150064108	9	21360											
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49693730	49693730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	BSN	NM_003458	exon5	c.T6741G	p.I2247M	CATGATTGCCCCC	.	61	22	104	0	.	97	G	49693730	T	G	49693730	3	3	170	1	0	0	0	0	1	0	0	0	1530	1800	63	5	6759	5	BSN	3	49693730	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	1735408	49693730	148328700	10	21361											
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	114070355	114070355	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZBTB20	NM_001164342	exon4	c.G570A	p.T190T	GATGCGCGTGCAC	.	41	7	36	0	.	95	T	114070355	C	T	114070355	2	4	170	1	0	0	0	0	0	0	0	1	17526	755	27	1		1	ZBTB20	3	114070355	Silent	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	64376625	114070355	83952075	11	21362											
HEG1	57493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124731574	124731574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HEG1	NM_020733	exon6	c.C2849T	p.P950L	GTTTGGGGAGAAG	.	45	15	74	0	.	70	A	124731574	G	A	124731574	3	1	170	1	0	0	0	0	1	0	0	0	7044	1232	43	3	1344	3	HEG1	3	124731574	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	10661219	124731574	73290856	12	21363											
MAPK10	5602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86988958	86988958	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAPK10	NM_002753	exon10	c.T953A	p.F318Y	GCTGGGAAGAGGG	.	154	52	197	1	.	1402	T	86988958	A	T	86988958	3	4	170	1	0	0	0	0	1	0	0	0	9272	246	9	4	466	4	MAPK10	4	86988958	Missense_Mutation	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10		86988958	104165318	13	21364											
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1221849	1221849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SLC6A19	NM_001003841	exon12	c.C1735A	p.P579T	TCCTACCCGAACT	.	127	61	142	0	.	90	A	1221849	C	A	1221849	3	1	170	1	0	0	0	0	1	0	0	0	14682	623	22	3	1781	3	SLC6A19	5	1221849	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		1221849	179693411	14	21365											
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	112174286	112174286	+	Nonsense_Mutation	SNP	C	C	T	rs75239284	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	APC	NM_001127510	exon17	c.C2995T	p.Q999X	TATGGTCAATACC	.	104	48	96	0	.	12026	T	112174286	C	T	112174286	4	4	170	1	0	0	0	0	0	1	0	0	763	827	29	3	3053	3	APC	5	112174286	Nonsense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	110952437	112174286	68740974	15	21366											
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140745479	140745479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PCDHGA5	NM_032054	exon1	c.C1582A	p.L528I	AGAGACCTACAGT	.	82	16	81	0	.	35	A	140745479	C	A	140745479	3	1	170	1	0	0	0	0	1	0	0	0	11557	680	24	3	1584	3	PCDHGA5	5	140745479	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	28571193	140745479	40169781	16	21367											
MBOAT1	154141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20124766	20124766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MBOAT1	NM_001080480	exon8	c.G780T	p.K260N	AAAGGTCTTCGTT	.	172	75	148	0	.	68	A	20124766	C	A	20124766	3	1	170	1	0	0	0	0	1	0	0	0	9356	912	32	3	731	3	MBOAT1	6	20124766	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		20124766	150990301	17	21368											
CDSN	1041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31084730	31084730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CDSN	NM_001264	exon2	c.A662G	p.D221G	GGGATGTCCGAAC	.	125	66	96	0	.	92	C	31084730	T	C	31084730	3	2	170	1	0	0	0	0	1	0	0	0	3179	1667	58	2	931	2	CDSN	6	31084730	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	10959964	31084730	140030337	18	21369											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	42610159	42610159	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UBR2	NM_015255	exon18	c.T2037G	p.Y679X	GATTTATTACTAC	.	56	27	56	0	.	94	G	42610159	T	G	42610159	4	3	170	1	0	0	0	0	0	1	0	0	16899	1500	52	5	2253	5	UBR2	6	42610159	Nonsense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	11525429	42610159	128504908	19	21370											
CRIP3	401262	hgsc.bcm.edu;bcgsc.ca	37	6	43274193	43274193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CRIP3	NM_206922	exon5	c.G391A	p.V131I	AATAGACGGGCTC	.	90	5	89	0	.	91	T	43274193	C	T	43274193	3	4	170	1	0	0	0	0	1	0	0	0	3876	536	19	1	239	1	CRIP3	6	43274193	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	664034	43274193	127840874	20	21371											
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70894595	70894595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL19A1	NM_001858	exon45	c.G2776A	p.G926R	TTATAGGGAATAA	.	97	31	88	0	.	156	A	70894595	G	A	70894595	3	1	170	1	0	0	0	0	1	0	0	0	3676	1246	43	3	2950	3	COL19A1	6	70894595	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	27620402	70894595	100220472	21	21372											
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88227931	88227931	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RARS2	NM_020320	exon17	c.T1467C	p.C489C	TTGTAAACAAGCA	.	123	20	106	0	.	92	G	88227931	A	G	88227931	2	3	170	1	0	0	0	0	0	0	0	1	13059	41	2	2		2	RARS2	6	88227931	Silent	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10	17333336	88227931	82887136	22	21373											
TNRC18	84629	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5416611	5416611	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TNRC18	NM_001080495	exon8	c.A2475G	p.P825P	CAGAGATGGGGGA	.	114	12	141	1	.	46	C	5416611	T	C	5416611	2	2	170	1	0	0	0	0	0	0	0	1	16336	1451	51	2		2	TNRC18	7	5416611	Silent	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10		5416611	153722052	23	21374											
TRIL	9865	broad.mit.edu;mdanderson.org	37	7	28997603	28997603	+	RNA	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	.	.	.	.	CAGCGGCGGGAGC	.	12	6	9	0	.	.	T	28997603	C	T	28997603	1	4	170	0	1	0	0	0	0	0	0	0	16482	755	27	1		1	TRIL	7	28997603	RNA	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	23580992	28997603	130141060	24	21375											
CAV1	857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116165144	116165144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CAV1	NM_001753	exon1	c.G28A	p.E10K	GACTCGGAGGTAG	.	104	22	105	0	.	946	A	116165144	G	A	116165144	3	1	170	1	0	0	0	0	1	0	0	0	2693	1175	41	3	30	3	CAV1	7	116165144	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	87167541	116165144	42973519	25	21376											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48701573	48701573	+	Missense_Mutation	SNP	G	G	A	rs147753989	by1000genomes;alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PRKDC	.	.	.	.	ACAGGGGTTTTTG	.	272	193	127	1	G|0.999;C|0.001	1515	A	48701573	G	A	48701573	3	1	170	1	0	0	0	0	1	0	0	0	12521	1261	44	3	1634	3	PRKDC	8	48701573	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		48701573	97662449	26	21377											
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101153180	101153180	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	FBXO43	NM_001029860	exon2	c.A1302G	p.L434L	ATTCTTTAAGCTA	.	354	38	151	0	.	226	C	101153180	T	C	101153180	2	2	170	1	0	0	0	0	0	0	0	1	5752	1751	61	2		2	FBXO43	8	101153180	Silent	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	52451607	101153180	45210842	27	21378											
KCNV1	27012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110980791	110980791	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KCNV1	NM_014379	exon3	c.C1029T	p.Y343Y	TTCTTCGTAACAC	.	109	21	55	0	.	226	A	110980791	G	A	110980791	2	1	170	1	0	0	0	0	0	0	0	1	8094	1140	40	1		1	KCNV1	8	110980791	Silent	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	9827611	110980791	35383231	28	21379											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	TGAGCACAAAAAA	.	197	21	96	0	.	1132	A	113347574	-	A	113347573	7	5	170	1	0	1	1	0	0	0	0	0	3946	478	17	0	4081	0	CSMD3	8	113347573	Frame_Shift_Ins	INS	-	TCGA-KR-A7K7-01A-11D-A33K-10	2366782	113347573	33016449	29	21380											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145755886	145755886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ARHGAP39	NM_025251	exon13	c.G3265C	p.E1089Q	TGTTCTCGAAGAT	.	203	28	99	0	.	90	G	145755886	C	G	145755886	3	3	170	1	0	0	0	0	1	0	0	0	884	893	31	4	83	4	ARHGAP39	8	145755886	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	32408313	145755886	608136	30	21381											
TLN1	7094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35703656	35703656	+	Silent	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TLN1	NM_006289	exon48	c.G6375C	p.V2125V	TGATGTCACATTG	.	78	32	72	1	.	609	G	35703656	C	G	35703656	2	3	170	1	0	0	0	0	0	0	0	1	15944	813	29	4		4	TLN1	9	35703656	Silent	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		35703656	105509775	31	21382											
UBQLN1	29979	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	86297921	86297921	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UBQLN1	NM_053067	exon3	c.A393G	p.S131S	AGGAGTTGATGAT	.	64	6	92	0	.	90	C	86297921	T	C	86297921	2	2	170	1	0	0	0	0	0	0	0	1	16893	1799	63	2		2	UBQLN1	9	86297921	Silent	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	50594265	86297921	54915510	32	21383											
DPP7	29952	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140008803	140008803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	DPP7	NM_013379	exon3	c.C213G	p.I71M	GAAGAAGATGGGC	.	62	13	80	1	.	90	C	140008803	G	C	140008803	3	2	170	1	0	0	0	0	1	0	0	0	4731	932	33	4	1309	4	DPP7	9	140008803	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	53710882	140008803	1204628	33	21384											
RBP3	5949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48389261	48389261	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RBP3	NM_002900	exon1	c.G1617A	p.L539L	GGTGAGCAGATAC	.	34	4	44	0	.	153	T	48389261	C	T	48389261	2	4	170	1	0	0	0	0	0	0	0	1	13157	697	25	3		3	RBP3	10	48389261	Silent	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		48389261	87145486	34	21385											
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	79397093	79397093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KCNMA1	NM_002247	exon1	c.T308A	p.F103Y	ATGATGAAGAGGC	.	60	22	113	0	.	93	T	79397093	A	T	79397093	3	4	170	1	0	0	0	0	1	0	0	0	8073	246	9	4	3686	4	KCNMA1	10	79397093	Missense_Mutation	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10	31007832	79397093	56137654	35	21386											
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106849559	106849559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SORCS3	NM_014978	exon6	c.C1055T	p.A352V	AGGAGGCGGACCT	.	117	40	117	0	.	99	T	106849559	C	T	106849559	3	4	170	1	0	0	0	0	1	0	0	0	14932	768	27	1	1077	1	SORCS3	10	106849559	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	27452466	106849559	28685188	36	21387											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	610529	610529	+	Missense_Mutation	SNP	C	C	T	rs201225978		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PHRF1	NM_020901	exon16	c.C4442T	p.P1481L	CTGCCCCGGCCCA	.	15	7	23	0	.	22	T	610529	C	T	610529	3	4	170	1	0	0	0	0	1	0	0	0	11861	652	23	1	4500	1	PHRF1	11	610529	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		610529	134395987	37	21388											
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936112	4936112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR51G2	NM_001005238	exon1	c.T782C	p.I261T	AGGCCAATCATGG	.	110	23	118	0	.	70	G	4936112	A	G	4936112	3	3	170	1	0	0	0	0	1	0	0	0	11099	101	4	2	166	2	OR51G2	11	4936112	Missense_Mutation	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10	4325583	4936112	130070404	38	21389											
CELF1	10658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47510522	47510522	+	Silent	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CELF1	NM_001172639	exon4	c.T126A	p.A42A	CTTGATAGCATCA	.	143	31	143	0	.	92	T	47510522	A	T	47510522	2	4	170	1	0	0	0	0	0	0	0	1	3215	407	15	4		4	CELF1	11	47510522	Silent	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10	42574410	47510522	87495994	39	21390											
NEU3	10825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74716816	74716816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NEU3	NM_006656	exon3	c.G665A	p.C222Y	TCTTTTGCTTCCA	.	44	15	46	0	.	24	A	74716816	G	A	74716816	3	1	170	1	0	0	0	0	1	0	0	0	10343	1319	46	3	675	3	NEU3	11	74716816	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	27206294	74716816	60289700	40	21391											
NEU3	10825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74717089	74717089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NEU3	NM_006656	exon3	c.A938G	p.Q313R	GTTGCCAAGGGAG	.	31	6	37	0	.	24	G	74717089	A	G	74717089	3	3	170	1	0	0	0	0	1	0	0	0	10343	130	5	2	948	2	NEU3	11	74717089	Missense_Mutation	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10	273	74717089	60289427	41	21392											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56822710	56822710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TIMELESS	NM_003920	exon11	c.A1261T	p.M421L	GCATCATCTCATA	.	91	37	83	0	.	159	A	56822710	T	A	56822710	3	1	170	1	0	0	0	0	1	0	0	0	15901	1435	50	4	2441	4	TIMELESS	12	56822710	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10		56822710	77029185	42	21393											
MYO1A	4640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57432386	57432386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MYO1A	NM_005379	exon17	c.A1570T	p.N524Y	GGTCATTATTCTT	.	83	13	89	0	.	231	A	57432386	T	A	57432386	3	1	170	1	0	0	0	0	1	0	0	0	10068	1754	61	4	1609	4	MYO1A	12	57432386	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10	609676	57432386	76419509	43	21394											
R3HDM2	22864	bcgsc.ca;mdanderson.org	37	12	57662147	57662147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	R3HDM2	NM_014925	exon16	c.C1927A	p.P643T	CTGCTGGGAGGCC	.	59	30	40	1	.	92	T	57662147	G	T	57662147	3	4	170	1	0	0	0	0	1	0	0	0	12888	1232	43	3	1031	3	R3HDM2	12	57662147	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	229761	57662147	76189748	44	21395											
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	107372216	107372216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MTERFD3	NM_001033050	exon3	c.G277C	p.A93P	CTACAGCAGTCTC	.	80	43	75	0	.	68	G	107372216	C	G	107372216	3	3	170	1	0	0	0	0	1	0	0	0	9921	710	25	4	884	4	MTERFD3	12	107372216	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	49710069	107372216	26479679	45	21396											
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118199277	118199277	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KSR2	NM_173598	exon4	c.G438A	p.T146T	CTTCCCCGTCTCT	.	70	29	82	0	.	1449	T	118199277	C	T	118199277	2	4	170	1	0	0	0	0	0	0	0	1	8582	639	23	1		1	KSR2	12	118199277	Silent	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	10827061	118199277	15652618	46	21397											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39264296	39264296	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	FREM2	NM_207361	exon1	c.G2815T	p.E939X	GATGATGAAGTGC	.	72	15	68	0	.	100	T	39264296	G	T	39264296	4	4	170	1	0	0	0	0	0	1	0	0	6045	1291	45	3	2817	3	FREM2	13	39264296	Nonsense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		39264296	75905582	47	21398											
MGAT2	4247	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	50089030	50089030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MGAT2	NM_002408	exon1	c.G1044A	p.W348X	GGACTGGACTCTT	.	90	22	92	0	.	90	A	50089030	G	A	50089030	4	1	170	1	0	0	0	0	0	1	0	0	9543	1183	41	3	1046	3	MGAT2	14	50089030	Nonsense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		50089030	57260510	48	21399											
HDDC3	374659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91475134	91475134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HDDC3	NM_198527	exon3	c.C209T	p.T70I	TCCAGGGTGGTGT	.	23	8	36	0	.	91	A	91475134	G	A	91475134	3	1	170	1	0	0	0	0	1	0	0	0	7017	1261	44	3	221	3	HDDC3	15	91475134	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		91475134	11056258	49	21400											
DECR2	26063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	461547	461547	+	Missense_Mutation	SNP	C	C	T	rs150303478	byfrequency	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	DECR2	NM_020664	exon8	c.C848T	p.P283L	GGCTGCCGGATTT	.	55	17	92	0	C|0.999;T|0.001	90	T	461547	C	T	461547	3	4	170	1	0	0	0	0	1	0	0	0	4383	652	23	1	878	1	DECR2	16	461547	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		461547	89893206	50	21401											
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55362664	55362664	+	Missense_Mutation	SNP	C	C	G	rs143272826	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	IRX6	NM_024335	exon5	c.C774G	p.D258E	GGAAGACCTGGAG	.	30	11	46	0	C|1.000;A|0.000	174	G	55362664	C	G	55362664	3	3	170	1	0	0	0	0	1	0	0	0	7848	506	18	4	792	4	IRX6	16	55362664	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	54901117	55362664	34992089	51	21402											
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88776364	88776364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CTU2	NM_001012759	exon3	c.C162G	p.F54L	GGCCTTCTACGTC	.	39	11	66	0	.	23	G	88776364	C	G	88776364	3	3	170	1	0	0	0	0	1	0	0	0	4048	912	32	4	172	4	CTU2	16	88776364	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	33413700	88776364	1578389	52	21403											
WSCD1	23302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6023676	6023676	+	Missense_Mutation	SNP	G	G	A	rs191802540		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	WSCD1	NM_015253	exon9	c.G1423A	p.V475I	TCGCACGTCCTGG	.	74	37	72	0	G|0.999;A|0.000	90	A	6023676	G	A	6023676	3	1	170	1	0	0	0	0	1	0	0	0	17403	1145	40	1	1453	1	WSCD1	17	6023676	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		6023676	75171534	53	21404											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17723609	17723613	+	Frame_Shift_Del	DEL	TGGAG	TGGAG	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	TGGAG	TGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SREBF1	NM_001005291	exon3	c.404_408del	p.135_136del	CTTCAATGGAGTG	.	54	24	48	0	.	91	-	17723613	TGGAG	-	17723609	7	5	170	1	0	1	0	1	0	0	0	0	15140	1451	51	0	3197	0	SREBF1	17	17723609	Frame_Shift_Del	DEL	TGGAG	TCGA-KR-A7K7-01A-11D-A33K-10	11699933	17723609	63471601	54	21405											
CPD	1362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28772780	28772780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CPD	NM_001304	exon12	c.G2615T	p.R872L	TTGTTCGATCCTC	.	199	54	236	1	.	92	T	28772780	G	T	28772780	3	4	170	1	0	0	0	0	1	0	0	0	3798	1058	37	1	2661	1	CPD	17	28772780	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	11049171	28772780	52422430	55	21406											
BZRAP1	9256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56400053	56400053	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	BZRAP1	NM_004758	exon9	c.C1279T	p.L427L	TCTGCAGGCCCTG	.	52	7	53	0	.	229	A	56400053	G	A	56400053	2	1	170	1	0	0	0	0	0	0	0	1	1577	991	35	3		3	BZRAP1	17	56400053	Silent	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	27627273	56400053	24795157	56	21407											
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	60464748	60464748	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	EFCAB3	NM_001144933	exon5	c.278delA	p.E93fs	ACAAAGAAAAGAA	.	92	39	64	0	.	227	-	60464748	A	-	60464748	7	5	170	1	0	1	0	1	0	0	0	0	4935	246	9	0	296	0	EFCAB3	17	60464748	Frame_Shift_Del	DEL	A	TCGA-KR-A7K7-01A-11D-A33K-10	4064695	60464748	20730462	57	21408											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9208758	9208758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ANKRD12	NM_015208	exon5	c.G408C	p.Q136H	AAAACAGATGGCA	.	169	49	174	0	.	92	C	9208758	G	C	9208758	3	2	170	1	0	0	0	0	1	0	0	0	640	933	33	4	422	4	ANKRD12	18	9208758	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		9208758	68868490	58	21409											
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	42643643	42643643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SETBP1	NM_015559	exon6	c.G4771C	p.E1591Q	GGGAGTGAGAGCG	.	206	55	280	0	.	155	C	42643643	G	C	42643643	3	2	170	1	0	0	0	0	1	0	0	0	14129	1291	45	4	4982	4	SETBP1	18	42643643	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	33434885	42643643	35433605	59	21410											
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60036567	60036567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TNFRSF11A	NM_003839	exon9	c.G1417A	p.A473T	CAGTGCGCCTATG	.	26	7	35	0	.	659	A	60036567	G	A	60036567	3	1	170	1	0	0	0	0	1	0	0	0	16281	1087	38	1	1451	1	TNFRSF11A	18	60036567	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	17392924	60036567	18040681	60	21411											
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77896211	77896211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ADNP2	NM_014913	exon4	c.C2915A	p.S972Y	ATGATTCCAGTTT	.	52	18	49	0	.	140	A	77896211	C	A	77896211	3	1	170	1	0	0	0	0	1	0	0	0	324	855	30	3	2925	3	ADNP2	18	77896211	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	17859644	77896211	181037	61	21412											
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10080566	10080566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL5A3	NM_015719	exon55	c.A3969T	p.R1323S	CCCTTCTCTGCCT	.	95	41	110	0	.	99	A	10080566	T	A	10080566	3	1	170	1	0	0	0	0	1	0	0	0	3698	1548	54	4	1320	4	COL5A3	19	10080566	Missense_Mutation	SNP	T	TCGA-KR-A7K7-01A-11D-A33K-10		10080566	49048417	62	21413											
PPAN-P2RY11	692312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10225190	10225190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PPAN-P2RY11	NM_001040664	exon13	c.G2161A	p.V721M	CCCTACGTGGGCT	.	43	23	38	0	.	24	A	10225190	G	A	10225190	3	1	170	1	0	0	0	0	1	0	0	0	12289	1145	40	1		1	PPAN-P2RY11	19	10225190	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	144624	10225190	48903793	63	21414											
ZNF844	284391	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12187711	12187711	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	NM_001136501	exon4	c.1776delA	p.T592fs	TGTGACAAAGCAT	.	111	28	104	0	.	.	-	12187711	A	-	12187711	7	5	170	1	0	1	0	1	0	0	0	0	18187	117	5	0	1790	0	ZNF844	19	12187711	Frame_Shift_Del	DEL	A	TCGA-KR-A7K7-01A-11D-A33K-10	1962521	12187711	46941272	64	21415											
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37203683	37203683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF567	NM_152603	exon3	c.G44A	p.G15E	TTTCAGGGTGTCA	.	89	50	103	0	.	90	A	37203683	G	A	37203683	3	1	170	1	0	0	0	0	1	0	0	0	17995	1246	43	3	50	3	ZNF567	19	37203683	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	25015972	37203683	21925300	65	21416											
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42754547	42754547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ERF	NM_006494	exon2	c.C193T	p.R65W	ACAGCCGGGCCAC	.	82	41	86	0	.	658	A	42754547	G	A	42754547	3	1	170	1	0	0	0	0	1	0	0	0	5221	1115	39	1	1465	1	ERF	19	42754547	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	5550864	42754547	16374436	66	21417											
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57058902	57058902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZFP28	NM_020828	exon3	c.C326T	p.A109V	ATGTGGCTGTAGA	.	175	35	160	0	.	91	T	57058902	C	T	57058902	3	4	170	1	0	0	0	0	1	0	0	0	17639	797	28	3	336	3	ZFP28	19	57058902	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	14304355	57058902	2070081	67	21418											
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57086027	57086027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF470	NM_001001668	exon5	c.G208T	p.D70Y	AAACCAGATGTGA	.	83	45	92	0	.	92	T	57086027	G	T	57086027	3	4	170	1	0	0	0	0	1	0	0	0	17926	942	33	3	218	3	ZNF470	19	57086027	Missense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10	27125	57086027	2042956	68	21419											
MAVS	57506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	3845079	3845079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAVS	NM_020746	exon6	c.G802T	p.E268X	GCTGCAGAGGGTA	.	53	21	55	0	.	90	T	3845079	G	T	3845079	4	4	170	1	0	0	0	0	0	1	0	0	9338	943	33	3	820	3	MAVS	20	3845079	Nonsense_Mutation	SNP	G	TCGA-KR-A7K7-01A-11D-A33K-10		3845079	59180441	69	21420											
NCOA5	57727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44695721	44695721	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NCOA5	NM_020967	exon5	c.602delC	p.S201fs	ATCACAGAACAAT	.	164	71	139	0	.	226	-	44695721	G	-	44695721	7	5	170	1	0	1	0	1	0	0	0	0	10232	942	33	0	1153	0	NCOA5	20	44695721	Frame_Shift_Del	DEL	G	TCGA-KR-A7K7-01A-11D-A33K-10	40850642	44695721	18329799	70	21421											
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354604	45354604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SLC2A10	NM_030777	exon2	c.C929G	p.S310C	CCCTGTCCGTCAG	.	59	24	43	0	.	91	G	45354604	C	G	45354604	3	3	170	1	0	0	0	0	1	0	0	0	14539	855	30	4	935	4	SLC2A10	20	45354604	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10	658883	45354604	17670916	71	21422											
SH3KBP1	30011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19560151	19560151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SH3KBP1	NM_031892	exon16	c.G1784A	p.G595E	GGTTTTCCTTCCG	.	227	46	276	1	.	130	T	19560151	C	T	19560151	3	4	170	1	0	0	0	0	1	0	0	0	14255	855	30	3	225	3	SH3KBP1	23	19560151	Missense_Mutation	SNP	C	TCGA-KR-A7K7-01A-11D-A33K-10		19560151	135710409	72	21423											
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107422545	107422545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL4A6	NM_001847	exon26	c.T2258G	p.I753S	CCAAAGATGTCAC	.	363	165	349	0	.	199	C	107422545	A	C	107422545	3	2	170	1	0	0	0	0	1	0	0	0	3695	333	12	5	2897	5	COL4A6	23	107422545	Missense_Mutation	SNP	A	TCGA-KR-A7K7-01A-11D-A33K-10	87862394	107422545	47848015	73	21424											
RUNX3	864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25229111	25229111	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RUNX3	NM_001031680	exon6	c.C792T	p.R264R	GAAGGAGCGGTCA	.	105	17	141	0	.	414	A	25229111	G	A	25229111	2	1	171	1	0	0	0	0	0	0	0	1	13749	958	34	3		3	RUNX3	1	25229111	Silent	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		25229111	224021510	1	21425											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27106176	27106176	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ARID1A	NM_006015	exon20	c.5787delT	p.S1929fs	TAAGAGTTCAGAG	.	111	10	115	0	.	584	-	27106176	T	-	27106176	7	5	171	1	0	1	0	1	0	0	0	0	913	1722	60	0	5865	0	ARID1A	1	27106176	Frame_Shift_Del	DEL	T	TCGA-KR-A7K8-01A-11D-A33K-10	1877065	27106176	222144445	2	21426											
RNF11	26994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51736890	51736890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RNF11	NM_014372	exon3	c.T361C	p.Y121H	CACATCTATCACC	.	61	6	51	0	.	226	C	51736890	T	C	51736890	3	2	171	1	0	0	0	0	1	0	0	0	13424	1522	53	2	371	2	RNF11	1	51736890	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	24630714	51736890	197513731	3	21427											
ST3GAL5	8869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86075256	86075256	+	Silent	SNP	C	C	T	rs144270260	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ST3GAL5	NM_003896	exon4	c.G390A	p.A130A	TAACAGCGCCATT	.	128	24	160	0	C|0.999;T|0.001	90	T	86075256	C	T	86075256	2	4	171	1	0	0	0	0	0	0	0	1	15217	755	27	1		1	ST3GAL5	2	86075256	Silent	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10		86075256	157124117	4	21428											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179614477	179614477	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TTN	NM_133379	exon46	c.A12650T	p.Y4217F	TTAATATATAATT	.	145	8	134	0	.	636	A	179614477	T	A	179614477	3	1	171	1	0	0	0	0	1	0	0	0	16732	1406	49	4	97647	4	TTN	2	179614477	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	93539221	179614477	63584896	5	21429	129	2									
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179614478	179614478	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TTN	NM_133379	exon46	c.T12649G	p.Y4217D	TAATATATAATTG	.	143	7	137	1	.	636	C	179614478	A	C	179614478	3	2	171	1	0	0	0	0	1	0	0	0	16732	449	16	5	97648	5	TTN	2	179614478	Missense_Mutation	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10	1	179614478	63584895	6	21430	129	2									
DNAH7	56171	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	196891538	196891538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DNAH7	NM_018897	exon7	c.A613G	p.T205A	ATAATGTAACTAT	.	105	8	84	1	.	102	C	196891538	T	C	196891538	3	2	171	1	0	0	0	0	1	0	0	0	4606	1638	57	2	11697	2	DNAH7	2	196891538	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	17277060	196891538	46307835	7	21431											
RHBDD1	84236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	227729638	227729638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RHBDD1	NM_001167608	exon4	c.G229A	p.D77N	CATGCTGATGATT	.	98	9	131	0	.	91	A	227729638	G	A	227729638	3	1	171	1	0	0	0	0	1	0	0	0	13316	1290	45	3	231	3	RHBDD1	2	227729638	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10	30838100	227729638	15469735	8	21432											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234299114	234299114	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DGKD	NM_152879	exon3	c.C333A	p.V111V	AAACGTCAACAAC	.	85	7	91	0	.	676	A	234299114	C	A	234299114	2	1	171	1	0	0	0	0	0	0	0	1	4467	813	29	3		3	DGKD	2	234299114	Silent	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	6569476	234299114	8900259	9	21433											
CHCHD4	131474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14158003	14158003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CHCHD4	NM_144636	exon3	c.T83C	p.V28A	TTGGTTACAAATA	.	75	17	107	0	.	90	G	14158003	A	G	14158003	3	3	171	1	0	0	0	0	1	0	0	0	3318	391	14	2	392	2	CHCHD4	3	14158003	Missense_Mutation	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10		14158003	183864427	10	21434											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu	37	3	46008641	46008641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FYCO1	NM_024513	exon8	c.G2185T	p.E729X	TAAGCTCTCTGTG	.	48	4	51	0	.	91	A	46008641	C	A	46008641	4	1	171	1	0	0	0	0	0	1	0	0	6125	922	32	3	2295	3	FYCO1	3	46008641	Nonsense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	31850638	46008641	152013789	11	21435											
LRIG1	26018	hgsc.bcm.edu;broad.mit.edu	37	3	66431944	66431944	+	Missense_Mutation	SNP	G	G	A	rs201954431		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LRIG1	NM_015541	exon17	c.C2729T	p.A910V	TCCATCGCTTTCC	.	91	4	94	0	.	230	A	66431944	G	A	66431944	3	1	171	1	0	0	0	0	1	0	0	0	8944	1087	38	1	564	1	LRIG1	3	66431944	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10	20423303	66431944	131590486	12	21436											
TMPRSS7	344805	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	111785346	111785346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TMPRSS7	NM_001042575	exon11	c.C1285T	p.Q429X	TGCACTCAAAGTG	.	143	19	98	1	.	70	T	111785346	C	T	111785346	4	4	171	1	0	0	0	0	0	1	0	0	16249	827	29	3	1323	3	TMPRSS7	3	111785346	Nonsense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	45353402	111785346	86237084	13	21437											
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	191107379	191107379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC50	NM_178335	exon11	c.T1417G	p.S473A	TCAGAGTCCTCTC	.	173	12	152	0	.	90	G	191107379	T	G	191107379	3	3	171	1	0	0	0	0	1	0	0	0	2820	1667	58	5	1459	5	CCDC50	3	191107379	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	79322033	191107379	6915051	14	21438											
GLRA3	8001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175564944	175564944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GLRA3	NM_006529	exon10	c.A1388C	p.Q463P	TAATCTTGCTGCT	.	101	13	77	0	.	93	G	175564944	T	G	175564944	3	3	171	1	0	0	0	0	1	0	0	0	6456	1812	63	5	10	5	GLRA3	4	175564944	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10		175564944	15589332	15	21439											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	13776635	13776635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DNAH5	NM_001369	exon55	c.C9286T	p.R3096X	TGTTTCGAAATTT	.	244	25	231	0	.	182	A	13776635	G	A	13776635	4	1	171	1	0	0	0	0	0	1	0	0	4604	1066	37	1	4688	1	DNAH5	5	13776635	Nonsense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		13776635	167138625	16	21440											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71756473	71756473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF366	NM_152625	exon2	c.C851T	p.T284M	CAGTGCGTGCACG	.	59	7	57	0	.	91	A	71756473	G	A	71756473	3	1	171	1	0	0	0	0	1	0	0	0	17867	1145	40	1	1399	1	ZNF366	5	71756473	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10	57979838	71756473	109158787	17	21441											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75906955	75906955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	IQGAP2	NM_006633	exon13	c.C1468T	p.H490Y	CCAGCCCATGCCC	.	74	10	108	0	.	96	T	75906955	C	T	75906955	3	4	171	1	0	0	0	0	1	0	0	0	7815	594	21	3	1518	3	IQGAP2	5	75906955	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	4150482	75906955	105008305	18	21442											
ADRB2	154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148206993	148206993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ADRB2	NM_000024	exon1	c.C599T	p.A200V	CCTATGCCATTGC	.	55	13	59	0	.	523	T	148206993	C	T	148206993	3	4	171	1	0	0	0	0	1	0	0	0	341	739	26	3	601	3	ADRB2	5	148206993	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	72300038	148206993	32708267	19	21443											
FAM65B	9750	broad.mit.edu;bcgsc.ca	37	6	24843221	24843221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FAM65B	NM_014722	exon14	c.A1789G	p.R597G	AGGATCTGCAGCC	.	113	7	105	1	.	91	C	24843221	T	C	24843221	3	2	171	1	0	0	0	0	1	0	0	0	5600	1588	55	2	1467	2	FAM65B	6	24843221	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10		24843221	146271846	20	21444											
HIST1H3C	8352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26045686	26045686	+	Silent	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	HIST1H3C	NM_003531	exon1	c.T48A	p.A16A	CAAAGCTCCGCGC	.	121	13	113	0	.	69	A	26045686	T	A	26045686	2	1	171	1	0	0	0	0	0	0	0	1	7157	1538	54	4		4	HIST1H3C	6	26045686	Silent	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	1202465	26045686	145069381	21	21445											
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	28963560	28963560	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF311	NM_001010877	exon7	c.A1219C	p.R407R	GGATTCTTATGTG	.	286	15	197	0	.	22	G	28963560	T	G	28963560	2	3	171	1	0	0	0	0	0	0	0	1	17831	1617	56	5		5	ZNF311	6	28963560	Silent	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	2917874	28963560	142151507	22	21446											
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52617735	52617735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GSTA2	NM_000846	exon5	c.T331G	p.F111V	GACTAAAGGGCAG	.	88	8	94	0	.	91	C	52617735	A	C	52617735	3	2	171	1	0	0	0	0	1	0	0	0	6831	72	3	5	349	5	GSTA2	6	52617735	Missense_Mutation	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10	23654175	52617735	118497332	23	21447											
TAAR2	9287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132938785	132938785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TAAR2	NM_001033080	exon2	c.G560T	p.G187V	TCTATTCCATCTG	.	96	12	123	0	.	91	A	132938785	C	A	132938785	3	1	171	1	0	0	0	0	1	0	0	0	15487	855	30	3	499	3	TAAR2	6	132938785	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	80321050	132938785	38176282	24	21448											
ZC3H12D	340152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	149771968	149771968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_207360	exon6	c.G1435A	p.A479T	CCCGGGCGCGCGC	.	27	8	22	0	.	.	T	149771968	C	T	149771968	3	4	171	1	0	0	0	0	1	0	0	0	17561	768	27	1	152	1	ZC3H12D	6	149771968	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	16833183	149771968	21343099	25	21449											
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151687673	151687673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZBTB2	NM_020861	exon3	c.G528T	p.Q176H	GGAGAGCTGTGAG	.	77	15	89	0	.	91	A	151687673	C	A	151687673	3	1	171	1	0	0	0	0	1	0	0	0	17525	796	28	3	1020	3	ZBTB2	6	151687673	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	1915705	151687673	19427394	26	21450											
LHFPL3	375612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	103969491	103969491	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_199000	exon1	c.G264T	p.L88L	GGAGCTGACCTGC	.	65	13	62	0	.	.	T	103969491	G	T	103969491	2	4	171	1	0	0	0	0	0	0	0	1	8766	1277	45	3		3	LHFPL3	7	103969491	Silent	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		103969491	55169172	27	21451											
PENK	5179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57354357	57354357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PENK	NM_001135690	exon4	c.G278A	p.S93N	AAATGGCTTTCTT	.	81	10	91	0	.	517	T	57354357	C	T	57354357	3	4	171	1	0	0	0	0	1	0	0	0	11727	797	28	3	529	3	PENK	8	57354357	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10		57354357	89009665	28	21452											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	72975749	72975749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TRPA1	NM_007332	exon5	c.C610A	p.Q204K	CAGCTTGGTGAAT	.	85	7	58	0	.	230	T	72975749	G	T	72975749	3	4	171	1	0	0	0	0	1	0	0	0	16574	1357	47	3	2841	3	TRPA1	8	72975749	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10	15621392	72975749	73388273	29	21453											
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82357195	82357195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PMP2	NM_002677	exon2	c.A103G	p.N35D	CCAAATTTCCCAG	.	105	22	82	0	.	90	C	82357195	T	C	82357195	3	2	171	1	0	0	0	0	1	0	0	0	12138	1841	64	2	307	2	PMP2	8	82357195	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	9381446	82357195	64006827	30	21454											
GALNT12	79695	bcgsc.ca;mdanderson.org	37	9	101570276	101570276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GALNT12	NM_024642	exon1	c.G296T	p.R99L	GCGTGCGGCTGCA	.	26	5	25	0	.	92	T	101570276	G	T	101570276	3	4	171	1	0	0	0	0	1	0	0	0	6210	1116	39	1	298	1	GALNT12	9	101570276	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		101570276	39643155	31	21455											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	135781136	135781136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TSC1	NM_000368	exon15	c.T1829C	p.V610A	AATGCCACCTCAA	.	150	10	141	0	.	1906	G	135781136	A	G	135781136	3	3	171	1	0	0	0	0	1	0	0	0	16602	159	6	2	1701	2	TSC1	9	135781136	Missense_Mutation	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10	34210860	135781136	5432295	32	21456											
FBXO18	84893	broad.mit.edu;ucsc.edu	37	10	5945117	5945117	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FBXO18	NM_032807	exon3	c.A289T	p.R97X	AAACCGAGAACAA	.	67	7	80	0	.	228	T	5945117	A	T	5945117	4	4	171	1	0	0	0	0	0	1	0	0	5731	296	11	4	304	4	FBXO18	10	5945117	Nonsense_Mutation	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10		5945117	129589630	33	21457											
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38343571	38343571	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF33A	NM_006954	exon5	c.T519C	p.C173C	TGCCTGTGGGAAA	.	55	11	84	0	.	93	C	38343571	T	C	38343571	2	2	171	1	0	0	0	0	0	0	0	1	17851	1702	59	2		2	ZNF33A	10	38343571	Silent	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	32398454	38343571	97191176	34	21458											
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	97197265	97197265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SORBS1	NM_001034955	exon2	c.A58T	p.S20C	CATTGCTGCCAGG	.	148	11	189	0	.	155	A	97197265	T	A	97197265	3	1	171	1	0	0	0	0	1	0	0	0	14927	1580	55	4	4137	4	SORBS1	10	97197265	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	58853694	97197265	38337482	35	21459											
TSSC4	10078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2424029	2424029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TSSC4	NM_005706	exon2	c.G166T	p.G56W	CTGCCTGGGGAGG	.	100	12	94	0	.	90	T	2424029	G	T	2424029	3	4	171	1	0	0	0	0	1	0	0	0	16664	1348	47	3	168	3	TSSC4	11	2424029	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		2424029	132582487	36	21460											
CLEC1A	51267	hgsc.bcm.edu;broad.mit.edu	37	12	10228256	10228256	+	Splice_Site	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CLEC1A	NM_016511	exon5	c.392-2A>G	.	GTGTGCTTGGAAA	.	117	7	99	0	.	91	C	10228256	T	C	10228256	5	2	171	1	0	0	0	0	0	0	1	0	3505	1623	56	2	464	2	CLEC1A	12	10228256	Splice_Site	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10		10228256	123623639	37	21461											
LOH12CR1	118426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	12514204	12514204	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LOH12CR1	NM_058169	exon2	c.C123T	p.S41S	GGGCTCCCAGGCC	.	147	12	162	0	.	91	T	12514204	C	T	12514204	2	4	171	1	0	0	0	0	0	0	0	1	8891	610	22	3		3	LOH12CR1	12	12514204	Silent	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	2285948	12514204	121337691	38	21462											
SETD8	387893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123880924	123880924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SETD8	NM_020382	exon5	c.T542G	p.L181R	GCAAACTTACGGA	.	34	8	50	0	.	90	G	123880924	T	G	123880924	3	3	171	1	0	0	0	0	1	0	0	0	14137	1609	56	5	560	5	SETD8	12	123880924	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	111366720	123880924	9970971	39	21463											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51190328	51190328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NIN	NM_020921	exon31	c.G6255T	p.L2085F	TTTCAACAACTGG	.	111	18	136	0	.	229	A	51190328	C	A	51190328	3	1	171	1	0	0	0	0	1	0	0	0	10417	477	17	3	150	3	NIN	14	51190328	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10		51190328	56159212	40	21464											
PPP1R14D	54866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41120819	41120819	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PPP1R14D	NM_017726	exon1	c.T21G	p.A7A	GCAGGAAGCAGGG	.	70	14	86	0	.	658	C	41120819	A	C	41120819	2	2	171	1	0	0	0	0	0	0	0	1	12362	59	3	5		5	PPP1R14D	15	41120819	Silent	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10		41120819	61410573	41	21465											
WHAMM	123720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83481941	83481941	+	Silent	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_001080435	exon2	c.T696A	p.V232V	ATTGGTTACCGTG	.	192	32	260	0	.	.	A	83481941	T	A	83481941	2	1	171	1	0	0	0	0	0	0	0	1	17358	1741	61	4		4	WHAMM	15	83481941	Silent	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	42361122	83481941	19049451	42	21466											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89395101	89395101	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ACAN	NM_001135	exon11	c.C2103A	p.I701I	GTGGATCGTGACC	.	130	23	184	0	.	25	A	89395101	C	A	89395101	2	1	171	1	0	0	0	0	0	0	0	1	117	874	31	1		1	ACAN	15	89395101	Silent	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	5913160	89395101	13136291	43	21467											
LRRK1	79705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101569225	101569225	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LRRK1	NM_024652	exon20	c.G2751A	p.R917R	CCTGAGGAACCTC	.	63	7	68	1	.	602	A	101569225	G	A	101569225	2	1	171	1	0	0	0	0	0	0	0	1	9032	1165	41	3		3	LRRK1	15	101569225	Silent	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10	12174124	101569225	962167	44	21468											
CCDC137	339230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	79638802	79638802	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC137	NM_199287	exon4	c.C526T	p.R176X	AAAGTCCGACGGA	.	124	26	95	0	.	69	T	79638802	C	T	79638802	4	4	171	1	0	0	0	0	0	1	0	0	2771	644	23	1	540	1	CCDC137	17	79638802	Nonsense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10		79638802	1556408	45	21469											
PSMA8	143471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	23772351	23772352	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PSMA8	NM_144662	exon7	c.747_748insA	p.K249fs	AGAGAAGAAAAAA	.	97	15	73	0	.	91	A	23772352	-	A	23772351	7	5	171	1	0	1	1	0	0	0	0	0	12673	933	33	0	773	0	PSMA8	18	23772351	Frame_Shift_Ins	INS	-	TCGA-KR-A7K8-01A-11D-A33K-10		23772351	54304897	46	21470											
C19orf45	374877	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7570453	7570453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	C19orf45	NM_198534	exon6	c.G946A	p.G316R	CTGAAAGGAAATT	.	44	5	52	0	.	90	A	7570453	G	A	7570453	3	1	171	1	0	0	0	0	1	0	0	0	1928	1001	35	3	964	3	C19orf45	19	7570453	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		7570453	51558530	47	21471											
NOTCH3	4854	broad.mit.edu;mdanderson.org	37	19	15288466	15288466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NOTCH3	NM_000435	exon24	c.T4273C	p.W1425R	GCCGCCAGGGGTC	.	14	3	14	0	.	855	G	15288466	A	G	15288466	3	3	171	1	0	0	0	0	1	0	0	0	10550	188	7	2	2732	2	NOTCH3	19	15288466	Missense_Mutation	SNP	A	TCGA-KR-A7K8-01A-11D-A33K-10	7718013	15288466	43840517	48	21472											
TMEM150B	284417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55824349	55824349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TMEM150B	NM_001085488	exon8	c.G580A	p.A194T	AGAGCGCGAACAG	.	86	11	98	0	.	68	T	55824349	C	T	55824349	3	4	171	1	0	0	0	0	1	0	0	0	16065	768	27	1	125	1	TMEM150B	19	55824349	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	40535883	55824349	3304634	49	21473											
ZNF133	7692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18296766	18296766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF133	NM_001083330	exon4	c.C1268A	p.T423N	ATTCAACCCTCAT	.	45	7	55	0	.	92	A	18296766	C	A	18296766	3	1	171	1	0	0	0	0	1	0	0	0	17720	507	18	3	1278	3	ZNF133	20	18296766	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10		18296766	44728754	50	21474											
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39755511	39755511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ERG	NM_001136154	exon12	c.G1275A	p.M425I	GGAGCCCATGTAC	.	81	12	102	0	.	848	T	39755511	C	T	39755511	3	4	171	1	0	0	0	0	1	0	0	0	5222	594	21	3	189	3	ERG	21	39755511	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10		39755511	8374384	51	21475											
RTN4R	65078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20229527	20229527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RTN4R	NM_023004	exon2	c.C1129T	p.R377W	TGTGCCGTGGGCC	.	30	12	22	0	.	90	A	20229527	G	A	20229527	3	1	171	1	0	0	0	0	1	0	0	0	13730	1144	40	1	296	1	RTN4R	22	20229527	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		20229527	31075039	52	21476											
THOC5	8563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29907254	29907254	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	THOC5	NM_001002878	exon20	c.A1829T	p.K610M	AGCTCCTTGTAGC	.	60	8	51	0	.	585	A	29907254	T	A	29907254	3	1	171	1	0	0	0	0	1	0	0	0	15865	1609	56	4	230	4	THOC5	22	29907254	Missense_Mutation	SNP	T	TCGA-KR-A7K8-01A-11D-A33K-10	9677727	29907254	21397312	53	21477											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36700184	36700184	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	MYH9	NM_002473	exon19	c.C2247A	p.L749L	GCTGTCGAGCTCC	.	103	16	119	0	.	292	T	36700184	G	T	36700184	2	4	171	1	0	0	0	0	0	0	0	1	10042	1045	37	1		1	MYH9	22	36700184	Silent	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10	6792930	36700184	14604382	54	21478											
DDX17	10521	broad.mit.edu;ucsc.edu	37	22	38882316	38882316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DDX17	NM_001098504	exon13	c.G1820C	p.R607P	TCACTACGATCCC	.	101	5	90	0	.	229	G	38882316	C	G	38882316	3	3	171	1	0	0	0	0	1	0	0	0	4344	536	19	4	379	4	DDX17	22	38882316	Missense_Mutation	SNP	C	TCGA-KR-A7K8-01A-11D-A33K-10	2182132	38882316	12422250	55	21479											
CT45A5	441521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134947978	134947978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CT45A5	NM_001007551	exon3	c.C347G	p.P116R	CTTTTGGGAGAGG	.	79	30	68	0	.	44	C	134947978	G	C	134947978	3	2	171	1	0	0	0	0	1	0	0	0	3988	1232	43	4	234	4	CT45A5	23	134947978	Missense_Mutation	SNP	G	TCGA-KR-A7K8-01A-11D-A33K-10		134947978	20322582	56	21480											
KLHL17	339451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	898282	898282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KLHL17	NM_198317	exon6	c.G1027A	p.V343M	GGGCCTGTGCTTT	.	27	12	30	0	.	90	A	898282	G	A	898282	3	1	172	1	0	0	0	0	1	0	0	0	8372	1377	48	3	1049	3	KLHL17	1	898282	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		898282	248352339	1	21481											
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3686347	3686347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CCDC27	NM_152492	exon11	c.C1744A	p.L582I	TCACAGCTCGAGA	.	74	26	74	0	.	91	A	3686347	C	A	3686347	3	1	172	1	0	0	0	0	1	0	0	0	2801	811	28	3	1786	3	CCDC27	1	3686347	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	2788065	3686347	245564274	2	21482											
MFAP2	4237	hgsc.bcm.edu;broad.mit.edu	37	1	17303663	17303663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MFAP2	NM_002403	exon3	c.T68C	p.L23P	GGGTCCAGGTCAT	.	76	4	91	0	.	514	G	17303663	A	G	17303663	3	3	172	1	0	0	0	0	1	0	0	0	9514	188	7	2	511	2	MFAP2	1	17303663	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	13617316	17303663	231946958	3	21483											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23759654	23759654	+	Missense_Mutation	SNP	C	C	T	rs199574094		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ASAP3	NM_017707	exon22	c.G2239A	p.E747K	CACTCTCGCCCTG	.	52	23	74	0	C|0.999;T|0.000	155	T	23759654	C	T	23759654	3	4	172	1	0	0	0	0	1	0	0	0	1012	893	31	1	488	1	ASAP3	1	23759654	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	6455991	23759654	225490967	4	21484											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27102066	27102066	+	Splice_Site	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARID1A	NM_139135	exon19	c.4343-2A>T	.	TATTTCAGGAACC	.	30	20	45	0	.	584	T	27102066	A	T	27102066	5	4	172	1	0	0	0	0	0	0	1	0	913	202	7	4	5066	4	ARID1A	1	27102066	Splice_Site	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	3342412	27102066	222148555	5	21485											
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35884069	35884069	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZMYM4	NM_005095	exon29	c.A4335G	p.K1445K	GAGGAAACGAAAT	.	84	28	111	0	.	291	G	35884069	A	G	35884069	2	3	172	1	0	0	0	0	0	0	0	1	17699	40	2	2		2	ZMYM4	1	35884069	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	8782003	35884069	213366552	6	21486											
LEPRE1	64175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43218272	43218272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LEPRE1	NM_001146289	exon9	c.A1409T	p.Q470L	ACCCGCTGGGAAC	.	108	25	94	0	.	94	A	43218272	T	A	43218272	3	1	172	1	0	0	0	0	1	0	0	0	8729	1580	55	4	848	4	LEPRE1	1	43218272	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	7334203	43218272	206032349	7	21487											
SLC25A24	29957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108686249	108686249	+	Silent	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC25A24	NM_013386	exon8	c.A1014G	p.E338E	CAAGCCTTCATGT	.	142	27	118	1	.	91	C	108686249	T	C	108686249	2	2	172	1	0	0	0	0	0	0	0	1	14487	1606	56	2		2	SLC25A24	1	108686249	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	65467977	108686249	140564372	8	21488											
RAP1A	5906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112247100	112247100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RAP1A	NM_001010935	exon7	c.G460A	p.V154I	ATCAATGTTAATG	.	150	55	99	0	.	847	A	112247100	G	A	112247100	3	1	172	1	0	0	0	0	1	0	0	0	13035	1377	48	3	478	3	RAP1A	1	112247100	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	3560851	112247100	137003521	9	21489											
SV2A	9900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149879627	149879627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SV2A	NM_014849	exon9	c.A1511T	p.Q504L	TGGATCTGATTCT	.	194	51	163	0	.	97	A	149879627	T	A	149879627	3	1	172	1	0	0	0	0	1	0	0	0	15414	1580	55	4	737	4	SV2A	1	149879627	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	37632527	149879627	99370994	10	21490											
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152382364	152382364	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CRNN	NM_016190	exon3	c.A1194T	p.T398T	CGGTACTGTCTCT	.	74	16	78	0	.	93	A	152382364	T	A	152382364	2	1	172	1	0	0	0	0	0	0	0	1	3892	1567	55	4		4	CRNN	1	152382364	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2502737	152382364	96868257	11	21491											
LENEP	55891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154966209	154966209	+	Silent	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LENEP	NM_018655	exon1	c.C126A	p.T42T	GCGGACCCTGAAG	.	61	18	60	0	.	68	A	154966209	C	A	154966209	2	1	172	1	0	0	0	0	0	0	0	1	8722	610	22	3		3	LENEP	1	154966209	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	2583845	154966209	94284412	12	21492											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	167096126	167096126	+	Silent	SNP	G	G	C	rs144793075	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DUSP27	NM_001080426	exon5	c.G1758C	p.L586L	CAGCCTGACAGCC	.	111	38	92	0	G|1.000;T|0.000	71	C	167096126	G	C	167096126	2	2	172	1	0	0	0	0	0	0	0	1	4824	1277	45	4		4	DUSP27	1	167096126	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	12129917	167096126	82154495	13	21493											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701627	181701627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CACNA1E	NM_001205293	exon20	c.C2405A	p.A802E	AGGAGGCGCCGAC	.	188	57	170	0	.	95	A	181701627	C	A	181701627	3	1	172	1	0	0	0	0	1	0	0	0	2542	768	27	1	2483	1	CACNA1E	1	181701627	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	14605501	181701627	67548994	14	21494											
HHAT	55733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210591627	210591627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HHAT	NM_001170587	exon6	c.A817T	p.S273C	ATCTACAGCAGCA	.	186	47	173	0	.	92	T	210591627	A	T	210591627	3	4	172	1	0	0	0	0	1	0	0	0	7089	188	7	4	934	4	HHAT	1	210591627	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	28890000	210591627	38658994	15	21495											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232539296	232539296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SIPA1L2	NM_020808	exon19	c.G4838T	p.C1613F	AGGGTGCAGAAGG	.	97	37	63	0	.	95	A	232539296	C	A	232539296	3	1	172	1	0	0	0	0	1	0	0	0	14330	710	25	3	342	3	SIPA1L2	1	232539296	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	21947669	232539296	16711325	16	21496											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240286488	240286488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FMN2	NM_020066	exon2	c.T1625C	p.L542P	GAACGCTGTTGGA	.	132	35	99	0	.	145	C	240286488	T	C	240286488	3	2	172	1	0	0	0	0	1	0	0	0	5950	1580	55	2	1631	2	FMN2	1	240286488	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	7747192	240286488	8964133	17	21497											
PLD5	200150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242264076	242264076	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PLD5	NM_152666	exon10	c.T1248C	p.F416F	CAGATCAAAAAAT	.	127	29	91	0	.	96	G	242264076	A	G	242264076	2	3	172	1	0	0	0	0	0	0	0	1	12049	127	5	2		2	PLD5	1	242264076	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	1977588	242264076	6986545	18	21498											
EFCAB2	84288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	245250660	245250660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EFCAB2	NM_032328	exon8	c.T487A	p.X163K	GAAAATTAAATGT	.	339	79	221	0	.	90	A	245250660	T	A	245250660	3	1	172	1	0	0	0	0	1	0	0	0	4934	1767	61	4	513	4	EFCAB2	1	245250660	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2986584	245250660	3999961	19	21499											
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11337476	11337476	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ROCK2	NM_004850	exon28	c.3280-2A>T	.	ATTTGCTATAAGA	.	219	61	215	0	.	546	A	11337476	T	A	11337476	5	1	172	1	0	0	0	0	0	0	1	0	13518	1536	53	4	916	4	ROCK2	2	11337476	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10		11337476	231861897	20	21500											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980759	23980759	+	Missense_Mutation	SNP	T	T	C	rs201429059		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ATAD2B	NM_017552	exon25	c.A3607G	p.M1203V	TGGTCATAGATAA	.	162	49	111	0	.	68	C	23980759	T	C	23980759	3	2	172	1	0	0	0	0	1	0	0	0	1072	1406	49	2	785	2	ATAD2B	2	23980759	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	12643283	23980759	219218614	21	21501											
KCNK3	3777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	26915803	26915803	+	Silent	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KCNK3	NM_002246	exon1	c.G60T	p.L20L	CCTGCTGGTGGGC	.	69	20	53	0	.	91	T	26915803	G	T	26915803	2	4	172	1	0	0	0	0	0	0	0	1	8067	1335	47	3		3	KCNK3	2	26915803	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	2935044	26915803	216283570	22	21502											
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69741794	69741794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AAK1	NM_014911	exon13	c.C1585A	p.Q529K	AATTCTGCATTAG	.	73	5	65	0	.	333	T	69741794	G	T	69741794	3	4	172	1	0	0	0	0	1	0	0	0	16	1328	46	3	1340	3	AAK1	2	69741794	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	42825991	69741794	173457579	23	21503											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84832704	84832704	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DNAH6	NM_001370	exon20	c.A3162T	p.T1054T	CGGCACAGATGAC	.	202	71	191	0	.	69	T	84832704	A	T	84832704	2	4	172	1	0	0	0	0	0	0	0	1	4605	175	7	4		4	DNAH6	2	84832704	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	15090910	84832704	158366669	24	21504											
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98779401	98779401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	VWA3B	NM_144992	exon8	c.C1076T	p.A359V	TGGTGGCCGAGCC	.	65	21	49	0	.	139	T	98779401	C	T	98779401	3	4	172	1	0	0	0	0	1	0	0	0	17238	739	26	3	1102	3	VWA3B	2	98779401	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	13946697	98779401	144419972	25	21505											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105890085	105890085	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TGFBRAP1	NM_004257	exon9	c.A1728T	p.P576P	GTCGTCTGGATTA	.	157	49	149	0	.	91	A	105890085	T	A	105890085	2	1	172	1	0	0	0	0	0	0	0	1	15821	1567	55	4		4	TGFBRAP1	2	105890085	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	7110684	105890085	137309288	26	21506											
MERTK	10461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112732991	112732991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MERTK	NM_006343	exon7	c.G1086T	p.M362I	CTGCATGAATGAA	.	141	56	150	0	.	1463	T	112732991	G	T	112732991	3	4	172	1	0	0	0	0	1	0	0	0	9479	1290	45	3	1112	3	MERTK	2	112732991	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	6842906	112732991	130466382	27	21507											
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116525912	116525912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DPP10	NM_001178034	exon13	c.T1165A	p.F389I	AAATTCTTTATGA	.	156	48	182	0	.	142	A	116525912	T	A	116525912	3	1	172	1	0	0	0	0	1	0	0	0	4727	1609	56	4	1374	4	DPP10	2	116525912	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	3792921	116525912	126673461	28	21508											
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128249666	128249666	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	IWS1	NM_017969	exon11	c.1930-2A>T	.	GGCAGCTGGGGAA	.	127	38	113	0	.	91	A	128249666	T	A	128249666	5	1	172	1	0	0	0	0	0	0	1	0	7931	1594	55	4	551	4	IWS1	2	128249666	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	11723754	128249666	114949707	29	21509											
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136567010	136567010	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LCT	NM_002299	exon8	c.G2907A	p.L969L	CACCTTCAAAGCT	.	81	18	108	0	.	101	T	136567010	C	T	136567010	2	4	172	1	0	0	0	0	0	0	0	1	8693	825	29	3		3	LCT	2	136567010	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	8317344	136567010	106632363	30	21510											
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178494226	178494226	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PDE11A	NM_016953	exon20	c.A2711T	p.K904M	TCCCACTTACTTC	.	243	76	220	0	.	93	A	178494226	T	A	178494226	3	1	172	1	0	0	0	0	1	0	0	0	11631	1609	56	4	94	4	PDE11A	2	178494226	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	41927216	178494226	64705147	31	21511											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179641996	179641996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TTN	NM_001267550	exon27	c.T4694C	p.V1565A	ATATTGACATTTT	.	99	22	76	0	.	636	G	179641996	A	G	179641996	3	3	172	1	0	0	0	0	1	0	0	0	16732	275	10	2	106638	2	TTN	2	179641996	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	1147770	179641996	63557377	32	21512											
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183866687	183866687	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NCKAP1	NM_205842	exon7	c.T615C	p.H205H	CTTGCTATGGGGT	.	283	77	252	0	.	92	G	183866687	A	G	183866687	2	3	172	1	0	0	0	0	0	0	0	1	10221	446	16	2		2	NCKAP1	2	183866687	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	4224691	183866687	59332686	33	21513											
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207176232	207176232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZDBF2	NM_020923	exon5	c.A6980T	p.D2327V	CATATGATCTGAG	.	289	74	309	0	.	3	T	207176232	A	T	207176232	3	4	172	1	0	0	0	0	1	0	0	0	17596	333	12	4	6990	4	ZDBF2	2	207176232	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	23309545	207176232	36023141	34	21514											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463387	241463387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ANKMY1	NM_016552	exon7	c.A1480T	p.S494C	GCAAGCTGTGGGA	.	63	18	63	0	.	90	A	241463387	T	A	241463387	3	1	172	1	0	0	0	0	1	0	0	0	634	1580	55	4	1389	4	ANKMY1	2	241463387	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	34287155	241463387	1735986	35	21515											
AGXT	189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241813413	241813413	+	Missense_Mutation	SNP	C	C	T	rs180177249		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AGXT	NM_000030	exon6	c.C614T	p.S205L	TGTACTCGGGCTC	.	45	22	41	0	.	90	T	241813413	C	T	241813413	3	4	172	1	0	0	0	0	1	0	0	0	404	893	31	1	636	1	AGXT	2	241813413	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	350026	241813413	1385960	36	21516											
ZFYVE20	64145	broad.mit.edu;bcgsc.ca	37	3	15137554	15137554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFYVE20	NM_022340	exon4	c.C74A	p.S25Y	TAGAAAGACTGCA	.	68	6	95	0	.	92	T	15137554	G	T	15137554	3	4	172	1	0	0	0	0	1	0	0	0	17663	942	33	3	2324	3	ZFYVE20	3	15137554	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		15137554	182884876	37	21517											
EAF1	85403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15475936	15475936	+	Silent	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EAF1	NM_033083	exon4	c.T417G	p.P139P	ACCACCTCCACCA	.	75	29	97	0	.	90	G	15475936	T	G	15475936	2	3	172	1	0	0	0	0	0	0	0	1	4875	1538	54	5		5	EAF1	3	15475936	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	338382	15475936	182546494	38	21518											
KAT2B	8850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	20156480	20156481	+	Splice_Site	DNP	GG	GG	TT	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	.	.	.	.	CAAACAGGTAAGT	.	86	30	147	0	.	.	TT	20156481	GG	TT	20156480	5	4	172	1	0	0	0	0	0	0	1	0	7982	1014	35	3	1176	3	KAT2B	3	20156480	Splice_Site	DNP	GG	TCGA-LG-A6GG-01A-11D-A30V-10	4680544	20156480	177865950	39	21519	130	2									
KAT2B	8850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	20156482	20156482	+	Splice_Site	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KAT2B	NM_003884	exon7	c.1150+2T>G	.	AACAGGTAAGTTT	.	83	30	143	0	.	228	G	20156482	T	G	20156482	5	3	172	1	0	0	0	0	0	0	1	0	7982	1652	57	5	1178	5	KAT2B	3	20156482	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2	20156482	177865948	40	21520	130	2									
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38158025	38158025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DLEC1	NM_007337	exon28	c.C3938T	p.P1313L	GGCCACCTTTCCC	.	81	31	96	0	.	161	T	38158025	C	T	38158025	3	4	172	1	0	0	0	0	1	0	0	0	4552	681	24	3	4048	3	DLEC1	3	38158025	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	18001543	38158025	159864405	41	21521											
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47461017	47461017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SCAP	NM_012235	exon13	c.C1741A	p.P581T	CAGGTGGGAAGAT	.	97	35	128	0	.	91	T	47461017	G	T	47461017	3	4	172	1	0	0	0	0	1	0	0	0	13877	1232	43	3	2142	3	SCAP	3	47461017	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	9302992	47461017	150561413	42	21522											
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73432795	73432795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PDZRN3	NM_015009	exon10	c.C2922A	p.S974R	CTCCTTGCTCCAG	.	44	16	70	0	.	232	T	73432795	G	T	73432795	3	4	172	1	0	0	0	0	1	0	0	0	11709	1310	46	3	282	3	PDZRN3	3	73432795	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	25971778	73432795	124589635	43	21523											
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	73673351	73673351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PDZRN3	NM_015009	exon1	c.T626G	p.L209R	ATCTGCAGCTCAA	.	15	7	24	0	.	232	C	73673351	A	C	73673351	3	2	172	1	0	0	0	0	1	0	0	0	11709	188	7	5	2614	5	PDZRN3	3	73673351	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	240556	73673351	124349079	44	21524											
OR5H1	26341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97851772	97851772	+	Silent	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR5H1	NM_001005338	exon1	c.G231T	p.V77V	CACAGTGACCCCA	.	701	250	963	1	.	136	T	97851772	G	T	97851772	2	4	172	1	0	0	0	0	0	0	0	1	11159	1277	45	3		3	OR5H1	3	97851772	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	24178421	97851772	100170658	45	21525											
ARHGAP31	57514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	119120710	119120710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARHGAP31	NM_020754	exon10	c.G1111A	p.G371S	ACCACCGGTGGAT	.	143	57	199	1	.	92	A	119120710	G	A	119120710	3	1	172	1	0	0	0	0	1	0	0	0	880	1116	39	1	1149	1	ARHGAP31	3	119120710	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	21268938	119120710	78901720	46	21526											
GPR156	165829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119886209	119886209	+	Silent	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR156	NM_153002	exon9	c.C2115G	p.A705A	ACTTGGGGCCCGG	.	47	16	65	0	.	92	C	119886209	G	C	119886209	2	2	172	1	0	0	0	0	0	0	0	1	6661	1219	43	4		4	GPR156	3	119886209	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	765499	119886209	78136221	47	21527											
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341447	121341447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FBXO40	NM_016298	exon3	c.C1171G	p.P391A	GACCTGCCCAAAT	.	115	51	159	0	.	273	G	121341447	C	G	121341447	3	3	172	1	0	0	0	0	1	0	0	0	5749	739	26	4	1177	4	FBXO40	3	121341447	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	1455238	121341447	76680983	48	21528											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130285713	130285713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	COL6A6	NM_001102608	exon4	c.T1450A	p.W484R	GACAGCTGGGACT	.	90	36	129	0	.	76	A	130285713	T	A	130285713	3	1	172	1	0	0	0	0	1	0	0	0	3703	1580	55	4	1464	4	COL6A6	3	130285713	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	8944266	130285713	67736717	49	21529											
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195013010	195013010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ACAP2	NM_012287	exon19	c.T1937A	p.I646N	GCCTGAATAAGTG	.	108	39	218	0	.	136	T	195013010	A	T	195013010	3	4	172	1	0	0	0	0	1	0	0	0	119	101	4	4	419	4	ACAP2	3	195013010	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	64727297	195013010	3009420	50	21530											
GAK	2580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	887684	887684	+	Nonsense_Mutation	SNP	G	G	T	rs140104121	byfrequency;alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GAK	NM_005255	exon8	c.C855A	p.Y285X	GACCGTGTACTGC	.	123	33	106	0	G|0.999;A|0.001	568	T	887684	G	T	887684	4	4	172	1	0	0	0	0	0	1	0	0	6195	1372	48	3	3164	3	GAK	4	887684	Nonsense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		887684	190266592	51	21531											
RNF212	285498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1084625	1084625	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RNF212	NM_194439	exon4	c.T248A	p.I83N	TCTAAAATCTGAA	.	91	24	84	0	.	68	T	1084625	A	T	1084625	3	4	172	1	0	0	0	0	1	0	0	0	13476	115	4	4	673	4	RNF212	4	1084625	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	196941	1084625	190069651	52	21532											
EVC	2121	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5733299	5733299	+	Missense_Mutation	SNP	G	G	A	rs144897690	byfrequency	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EVC	NM_153717	exon4	c.G532A	p.V178I	TCCAGCGTCCACT	.	243	90	229	1	G|0.997;A|0.003	92	A	5733299	G	A	5733299	3	1	172	1	0	0	0	0	1	0	0	0	5285	1145	40	1	546	1	EVC	4	5733299	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	4648674	5733299	185420977	53	21533											
ABLIM2	84448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8031435	8031435	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ABLIM2	NM_001130087	exon12	c.C1149T	p.S383S	CCCGAGGCTAACC	.	91	23	101	0	.	47	A	8031435	G	A	8031435	2	1	172	1	0	0	0	0	0	0	0	1	95	1194	42	3		3	ABLIM2	4	8031435	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	2298136	8031435	183122841	54	21534											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30723268	30723268	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PCDH7	NM_032457	exon1	c.T224A	p.L75Q	AGTACCTGAAGAT	.	61	15	59	0	.	229	A	30723268	T	A	30723268	3	1	172	1	0	0	0	0	1	0	0	0	11516	1580	55	4	226	4	PCDH7	4	30723268	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	22691833	30723268	160431008	55	21535											
HERC6	55008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89329771	89329771	+	Splice_Site	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HERC6	NM_017912	exon11	c.1368+2T>C	.	CCATGGTAATAGC	.	158	107	402	0	.	658	C	89329771	T	C	89329771	5	2	172	1	0	0	0	0	0	0	1	0	7062	1652	57	2	1209	2	HERC6	4	89329771	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	58606503	89329771	101824505	56	21536											
CFI	3426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110685711	110685711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CFI	NM_000204	exon3	c.T464G	p.L155R	AGGTCAAGGCAGG	.	65	32	60	0	.	90	C	110685711	A	C	110685711	3	2	172	1	0	0	0	0	1	0	0	0	3289	72	3	5	1331	5	CFI	4	110685711	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	21355940	110685711	80468565	57	21537											
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110897334	110897334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EGF	NM_001963	exon13	c.A1996T	p.I666F	TCTGTGATTGAAA	.	180	108	203	0	.	524	T	110897334	A	T	110897334	3	4	172	1	0	0	0	0	1	0	0	0	4962	333	12	4	2046	4	EGF	4	110897334	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	211623	110897334	80256942	58	21538											
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120189490	120189490	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	USP53	NM_019050	exon13	c.G1203A	p.K401K	GGCAAAGCAGAGA	.	663	193	682	0	.	660	A	120189490	G	A	120189490	2	1	172	1	0	0	0	0	0	0	0	1	17081	962	34	3		3	USP53	4	120189490	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	9292156	120189490	70964786	59	21539											
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	166996136	166996136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TLL1	NM_012464	exon17	c.T2295A	p.N765K	TGACAATAAACAT	.	185	17	171	0	.	158	A	166996136	T	A	166996136	3	1	172	1	0	0	0	0	1	0	0	0	15942	1403	49	4	2361	4	TLL1	4	166996136	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	46806646	166996136	24158140	60	21540											
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	174253236	174253236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HMGB2	NM_001130689	exon4	c.G625A	p.E209K	TTTATTCTTCATC	.	138	28	130	0	.	650	T	174253236	C	T	174253236	3	4	172	1	0	0	0	0	1	0	0	0	7226	922	32	3	8	3	HMGB2	4	174253236	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	7257100	174253236	16901040	61	21541											
ZFP42	132625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	188924650	188924650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFP42	NM_174900	exon4	c.C689A	p.S230X	AGAGCTCAAAACT	.	68	39	50	0	.	228	A	188924650	C	A	188924650	4	1	172	1	0	0	0	0	0	1	0	0	17647	838	29	3	691	3	ZFP42	4	188924650	Nonsense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	14671414	188924650	2229626	62	21542											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16682120	16682120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MYO10	NM_012334	exon31	c.C4049T	p.P1350L	GAGTTGGGTCTGA	.	37	8	27	0	.	3	A	16682120	G	A	16682120	3	1	172	1	0	0	0	0	1	0	0	0	10062	1232	43	3	2171	3	MYO10	5	16682120	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		16682120	164233140	63	21543											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89925133	89925133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR98	NM_032119	exon9	c.T1616C	p.L539S	TATCCTTGAGTTT	.	304	141	190	0	.	103	C	89925133	T	C	89925133	3	2	172	1	0	0	0	0	1	0	0	0	6721	1821	63	2	1650	2	GPR98	5	89925133	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	73243013	89925133	90990127	64	21544											
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115783094	115783094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SEMA6A	NM_020796	exon19	c.C2308T	p.P770S	GGCTGGGCTTCCG	.	82	44	73	0	.	92	A	115783094	G	A	115783094	3	1	172	1	0	0	0	0	1	0	0	0	14039	1203	42	3	788	3	SEMA6A	5	115783094	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	25857961	115783094	65132166	65	21545											
PCDHGB2	56103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140740665	140740665	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PCDHGB2	NM_018923	exon1	c.A963C	p.A321A	CGAAGCAAAAGAT	.	183	39	131	0	.	33	C	140740665	A	C	140740665	2	2	172	1	0	0	0	0	0	0	0	1	11563	117	5	5		5	PCDHGB2	5	140740665	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	24957571	140740665	40174595	66	21546											
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773878	140773878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_014004	exon1	c.C1498T	p.P500S	GGGGCGCCCCTGT	.	184	88	128	0	.	.	T	140773878	C	T	140773878	3	4	172	1	0	0	0	0	1	0	0	0	11560	739	26	3	1500	3	PCDHGA8	5	140773878	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	33213	140773878	40141382	67	21547											
HAVCR2	84868	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156522415	156522415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HAVCR2	NM_032782	exon5	c.G578T	p.R193L	GAGTCCCGTAAGT	.	169	80	119	1	.	90	A	156522415	C	A	156522415	3	1	172	1	0	0	0	0	1	0	0	0	6974	652	23	1	339	1	HAVCR2	5	156522415	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	15748537	156522415	24392845	68	21548											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156590005	156590005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FAM71B	NM_130899	exon2	c.T1271A	p.V424D	TTCCAGACTTCAG	.	95	22	82	0	.	96	T	156590005	A	T	156590005	3	4	172	1	0	0	0	0	1	0	0	0	5608	275	10	4	550	4	FAM71B	5	156590005	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	67590	156590005	24325255	69	21549											
KIAA1191	57179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175774922	175774922	+	Splice_Site	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KIAA1191	NM_001079685	exon8	c.709+2T>G	.	TGCCTTACCAGAA	.	161	44	109	0	.	91	C	175774922	A	C	175774922	5	2	172	1	0	0	0	0	0	0	1	0	8212	405	14	5	214	5	KIAA1191	5	175774922	Splice_Site	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	19184917	175774922	5140338	70	21550											
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176016107	176016107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CDHR2	NM_017675	exon22	c.2932delG	p.G978fs	AAGGACGGGGCCA	.	112	23	95	0	.	70	-	176016107	G	-	176016107	7	5	172	1	0	1	0	1	0	0	0	0	3119	1116	39	0	3014	0	CDHR2	5	176016107	Frame_Shift_Del	DEL	G	TCGA-LG-A6GG-01A-11D-A30V-10	241185	176016107	4899153	71	21551											
TRIM52	84851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180684462	180684462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TRIM52	NM_032765	exon2	c.C847A	p.L283I	TCTGAAGTATTCC	.	223	42	143	0	.	90	T	180684462	G	T	180684462	3	4	172	1	0	0	0	0	1	0	0	0	16524	1029	36	3	50	3	TRIM52	5	180684462	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	4668355	180684462	230798	72	21552											
SLC17A3	10786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25850686	25850686	+	Splice_Site	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC17A3	NM_006632	exon8	c.759+1G>A	.	TACTCACGTCTCT	.	157	41	160	0	.	91	T	25850686	C	T	25850686	5	4	172	1	0	0	0	0	0	0	1	0	14418	550	19	1	522	1	SLC17A3	6	25850686	Splice_Site	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10		25850686	145264381	73	21553											
HIST1H2BE	8344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26184113	26184113	+	Silent	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HIST1H2BE	NM_003523	exon1	c.C90G	p.R30R	GAAGCGCAAGCGC	.	160	42	148	0	.	90	G	26184113	C	G	26184113	2	3	172	1	0	0	0	0	0	0	0	1	7144	697	25	4		4	HIST1H2BE	6	26184113	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	333427	26184113	144930954	74	21554											
FANCE	2178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35428340	35428340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FANCE	NM_021922	exon8	c.A1328G	p.E443G	TCTTGGAGCTGCC	.	109	32	76	0	.	661	G	35428340	A	G	35428340	3	3	172	1	0	0	0	0	1	0	0	0	5666	304	11	2	1358	2	FANCE	6	35428340	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	9244227	35428340	135686727	75	21555											
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	37611713	37611713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MDGA1	NM_153487	exon14	c.A2408G	p.Y803C	AACATGTAGTAGC	.	76	20	63	0	.	91	C	37611713	T	C	37611713	3	2	172	1	0	0	0	0	1	0	0	0	9406	1638	57	2	475	2	MDGA1	6	37611713	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2183373	37611713	133503354	76	21556											
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39311593	39311593	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KIF6	NM_145027	exon23	c.2322-2A>T	.	GGATGCTGGAGGC	.	76	28	90	0	.	713	A	39311593	T	A	39311593	5	1	172	1	0	0	0	0	0	0	1	0	8308	1594	55	4	132	4	KIF6	6	39311593	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	1699880	39311593	131803474	77	21557											
TRERF1	55809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42200563	42200563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TRERF1	NM_033502	exon17	c.A3134G	p.K1045R	CGGGCCTTGGTCA	.	56	12	36	0	.	230	C	42200563	T	C	42200563	3	2	172	1	0	0	0	0	1	0	0	0	16472	1609	56	2	476	2	TRERF1	6	42200563	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2888970	42200563	128914504	78	21558											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51923279	51923279	+	Missense_Mutation	SNP	A	A	T	rs201989004	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PKHD1	NM_170724	exon16	c.T1354A	p.Y452N	GGTAGTACATGGC	.	107	37	52	0	A|0.999;G|0.000	603	T	51923279	A	T	51923279	3	4	172	1	0	0	0	0	1	0	0	0	11971	391	14	4	11117	4	PKHD1	6	51923279	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	9722716	51923279	119191788	79	21559											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70981793	70981793	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	COL9A1	NM_001851	exon14	c.1066-2A>T	.	CGGCCCTAAAAGA	.	388	113	393	0	.	94	A	70981793	T	A	70981793	5	1	172	1	0	0	0	0	0	0	1	0	3707	1536	53	4	1805	4	COL9A1	6	70981793	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	19058514	70981793	100133274	80	21560											
B3GAT2	135152	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	71665601	71665601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	B3GAT2	NM_080742	exon1	c.C532A	p.P178T	CGCCGGGCTGCGC	.	129	38	113	1	.	93	T	71665601	G	T	71665601	3	4	172	1	0	0	0	0	1	0	0	0	1254	1203	42	3	455	3	B3GAT2	6	71665601	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	683808	71665601	99449466	81	21561											
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79688417	79688417	+	Silent	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PHIP	NM_017934	exon24	c.G2781C	p.V927V	TTCTCCCACAGCC	.	97	47	159	0	.	579	G	79688417	C	G	79688417	2	3	172	1	0	0	0	0	0	0	0	1	11842	581	21	4		4	PHIP	6	79688417	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	8022816	79688417	91426650	82	21562											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90388402	90388402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MDN1	NM_014611	exon75	c.G12328A	p.E4110K	GCTTCTCCTTCTC	.	107	35	121	0	.	100	T	90388402	C	T	90388402	3	4	172	1	0	0	0	0	1	0	0	0	9415	864	30	3	4574	3	MDN1	6	90388402	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	10699985	90388402	80726665	83	21563											
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97512550	97512550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KLHL32	NM_052904	exon5	c.G359T	p.S120I	CGGGCAGTCACCT	.	92	33	94	0	.	94	T	97512550	G	T	97512550	3	4	172	1	0	0	0	0	1	0	0	0	8386	1029	36	3	373	3	KLHL32	6	97512550	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	7124148	97512550	73602517	84	21564											
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	99374696	99374696	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FBXL4	NM_012160	exon3	c.G169T	p.E57X	CTACTTCTTTGGC	.	86	41	125	0	.	227	A	99374696	C	A	99374696	4	1	172	1	0	0	0	0	0	1	0	0	5721	922	32	3	1724	3	FBXL4	6	99374696	Nonsense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	1862146	99374696	71740371	85	21565											
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106553643	106553643	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PRDM1	NM_001198	exon5	c.A1608T	p.A536A	CTCAGCAGCGATG	.	122	48	161	0	.	862	T	106553643	A	T	106553643	2	4	172	1	0	0	0	0	0	0	0	1	12450	175	7	4		4	PRDM1	6	106553643	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	7178947	106553643	64561424	86	21566											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	111688372	111688372	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	REV3L	NM_002912	exon14	c.A6619T	p.R2207X	GTTTTCTCTGTAT	.	82	37	136	0	.	294	A	111688372	T	A	111688372	4	1	172	1	0	0	0	0	0	1	0	0	13240	1559	54	4	2849	4	REV3L	6	111688372	Nonsense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	5134729	111688372	59426695	87	21567											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	111693804	111693804	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	REV3L	NM_002912	exon13	c.G5754A	p.K1918K	CCTGGGCTTTTCT	.	72	34	95	0	.	294	T	111693804	C	T	111693804	2	4	172	1	0	0	0	0	0	0	0	1	13240	796	28	3		3	REV3L	6	111693804	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	5432	111693804	59421263	88	21568											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117686251	117686251	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ROS1	NM_002944	exon20	c.A3090T	p.T1030T	CAGAGATGTTTTG	.	97	42	144	0	.	1353	A	117686251	T	A	117686251	2	1	172	1	0	0	0	0	0	0	0	1	13531	1451	51	4		4	ROS1	6	117686251	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	5992447	117686251	53428816	89	21569											
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131910712	131910712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MED23	NM_015979	exon29	c.C3850A	p.L1284M	TCAGCAGCATGTC	.	142	51	221	0	.	24	T	131910712	G	T	131910712	3	4	172	1	0	0	0	0	1	0	0	0	9441	962	34	3	289	3	MED23	6	131910712	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	14224461	131910712	39204355	90	21570											
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135715921	135715921	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AHI1	NM_001134832	exon22	c.T3102G	p.T1034T	GGTCTGAGTGAAA	.	107	36	134	0	.	227	C	135715921	A	C	135715921	2	2	172	1	0	0	0	0	0	0	0	1	413	291	11	5		5	AHI1	6	135715921	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	3805209	135715921	35399146	91	21571											
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166862319	166862319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RPS6KA2	NM_001006932	exon15	c.A1249T	p.I417F	AGTGGATGTTGTT	.	49	25	78	0	.	1405	A	166862319	T	A	166862319	3	1	172	1	0	0	0	0	1	0	0	0	13651	1464	51	4	1008	4	RPS6KA2	6	166862319	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	31146398	166862319	4252748	92	21572											
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169639734	169639734	+	Silent	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	THBS2	NM_003247	exon8	c.A1089G	p.P363P	AAAGGATGGACTG	.	41	17	58	0	.	95	C	169639734	T	C	169639734	2	2	172	1	0	0	0	0	0	0	0	1	15851	1451	51	2		2	THBS2	6	169639734	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2777415	169639734	1475333	93	21573											
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2252879	2252879	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MAD1L1	NM_003550	exon10	c.G954A	p.E318E	CAGTCTCTCCCAG	.	49	19	46	0	.	1083	T	2252879	C	T	2252879	2	4	172	1	0	0	0	0	0	0	0	1	9147	912	32	3		3	MAD1L1	7	2252879	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10		2252879	156885784	94	21574											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2951897	2951897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CARD11	NM_032415	exon23	c.A3053G	p.Q1018R	GTCTTCTGCCTTC	.	108	43	84	0	.	870	C	2951897	T	C	2951897	3	2	172	1	0	0	0	0	1	0	0	0	2645	1580	55	2	423	2	CARD11	7	2951897	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	699018	2951897	156186766	95	21575											
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5336621	5336621	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC29A4	NM_153247	exon7	c.C674G	p.P225R	TGCTGCCCGACGA	.	46	10	34	0	.	515	G	5336621	C	G	5336621	3	3	172	1	0	0	0	0	1	0	0	0	14537	623	22	4	696	4	SLC29A4	7	5336621	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	2384724	5336621	153802042	96	21576											
NPSR1	387129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34917718	34917718	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NPSR1	NM_207173	exon9	c.T1056A	p.A352A	GGAGGCTGCGCTA	.	251	70	232	0	.	94	A	34917718	T	A	34917718	2	1	172	1	0	0	0	0	0	0	0	1	10600	1567	55	4		4	NPSR1	7	34917718	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	29581097	34917718	124220945	97	21577											
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780305	37780305	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR141	NM_181791	exon1	c.C310G	p.L104V	ACGTTCCTATTCT	.	123	36	107	0	.	93	G	37780305	C	G	37780305	3	3	172	1	0	0	0	0	1	0	0	0	6649	680	24	4	312	4	GPR141	7	37780305	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	2862587	37780305	121358358	98	21578											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47886593	47886593	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PKD1L1	NM_138295	exon32	c.A5037T	p.A1679A	GTTCACTGCCTTA	.	327	114	313	0	.	145	A	47886593	T	A	47886593	2	1	172	1	0	0	0	0	0	0	0	1	11964	1567	55	4		4	PKD1L1	7	47886593	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	10106288	47886593	111252070	99	21579											
FZD9	8326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72849306	72849306	+	Silent	SNP	C	C	T	rs144961735		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FZD9	NM_003508	exon1	c.C969T	p.F323F	CTACTTCGGCATG	.	59	18	54	0	C|1.000;T|0.000	1082	T	72849306	C	T	72849306	2	4	172	1	0	0	0	0	0	0	0	1	6137	883	31	1		1	FZD9	7	72849306	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	24962713	72849306	86289357	100	21580											
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75176292	75176292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HIP1	NM_005338	exon25	c.A2504T	p.Q835L	AGCACCTGAATAG	.	85	20	81	0	.	1085	A	75176292	T	A	75176292	3	1	172	1	0	0	0	0	1	0	0	0	7114	1580	55	4	637	4	HIP1	7	75176292	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2326986	75176292	83962371	101	21581											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83675692	83675692	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SEMA3A	NM_006080	exon6	c.T615G	p.L205L	GTGCCCAAGAGTT	.	219	66	157	0	.	156	C	83675692	A	C	83675692	2	2	172	1	0	0	0	0	0	0	0	1	14024	117	5	5		5	SEMA3A	7	83675692	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	8499400	83675692	75462971	102	21582											
SAMD9L	219285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92763732	92763732	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SAMD9L	NM_152703	exon5	c.A1553C	p.Q518P	TCTCTCTGCCATA	.	207	73	189	1	.	94	G	92763732	T	G	92763732	3	3	172	1	0	0	0	0	1	0	0	0	13827	1580	55	5	3205	5	SAMD9L	7	92763732	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	9088040	92763732	66374931	103	21583											
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99506413	99506413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TRIM4	NM_033017	exon4	c.T590C	p.M197T	ATTCTCATTCGCT	.	99	30	88	0	.	227	G	99506413	A	G	99506413	3	3	172	1	0	0	0	0	1	0	0	0	16511	217	8	2	928	2	TRIM4	7	99506413	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	6742681	99506413	59632250	104	21584											
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102953436	102953436	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DNAJC2	NM_014377	exon16	c.G1749A	p.A583A	AGGCACCGCTTCT	.	154	57	181	0	.	158	T	102953436	C	T	102953436	2	4	172	1	0	0	0	0	0	0	0	1	4639	639	23	1		1	DNAJC2	7	102953436	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	3447023	102953436	56185227	105	21585											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111575684	111575684	+	Splice_Site	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DOCK4	NM_014705	exon13	c.978-1G>C	.	TTACACCTATGAA	.	207	55	207	0	.	26	G	111575684	C	G	111575684	5	3	172	1	0	0	0	0	0	0	1	0	4689	695	24	4	5087	4	DOCK4	7	111575684	Splice_Site	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	8622248	111575684	47562979	106	21586											
ASB15	142685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123269106	123269106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ASB15	NM_080928	exon8	c.C1058T	p.A353V	AGACTGCGCTGTA	.	235	70	214	2	.	228	T	123269106	C	T	123269106	3	4	172	1	0	0	0	0	1	0	0	0	1019	768	27	1	1084	1	ASB15	7	123269106	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	11693422	123269106	35869557	107	21587											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143043750	143043750	+	Missense_Mutation	SNP	A	A	T	rs199610988	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CLCN1	NM_000083	exon19	c.A2363T	p.Q788L	CAACCCAGGTGAG	.	40	10	31	0	A|0.999;C|0.001	156	T	143043750	A	T	143043750	3	4	172	1	0	0	0	0	1	0	0	0	3462	202	7	4	2437	4	CLCN1	7	143043750	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	19774644	143043750	16094913	108	21588											
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	144096937	144096937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NOBOX	NM_001080413	exon6	c.G1067T	p.R356L	TTGGCCCGGCGAT	.	82	25	90	0	.	69	A	144096937	C	A	144096937	3	1	172	1	0	0	0	0	1	0	0	0	10512	652	23	1	1028	1	NOBOX	7	144096937	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	1053187	144096937	15041726	109	21589											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151873528	151873528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MLL3	NM_170606	exon38	c.C9010G	p.L3004V	TCCCCAGACTGTG	.	154	44	110	0	.	1398	C	151873528	G	C	151873528	3	2	172	1	0	0	0	0	1	0	0	0	9622	933	33	4	5813	4	MLL3	7	151873528	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	7776591	151873528	7265135	110	21590											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41547821	41547821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ANK1	NM_001142446	exon34	c.T4151A	p.L1384Q	TTGCGCAGAAACG	.	79	37	107	0	.	716	T	41547821	A	T	41547821	3	4	172	1	0	0	0	0	1	0	0	0	620	188	7	4	1983	4	ANK1	8	41547821	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10		41547821	104816201	111	21591											
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53050033	53050033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ST18	NM_014682	exon18	c.C2179A	p.P727T	ATCCTGGTGTTGG	.	114	39	127	0	.	95	T	53050033	G	T	53050033	3	4	172	1	0	0	0	0	1	0	0	0	15211	1261	44	3	1000	3	ST18	8	53050033	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	11502212	53050033	93313989	112	21592											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55533794	55533794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RP1	NM_006269	exon2	c.C268G	p.H90D	GGCAGGCACAGCA	.	58	32	104	0	.	102	G	55533794	C	G	55533794	3	3	172	1	0	0	0	0	1	0	0	0	13532	710	25	4	270	4	RP1	8	55533794	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	2483761	55533794	90830228	113	21593											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61769252	61769252	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CHD7	NM_017780	exon34	c.A7413G	p.S2471S	TGTCTCAACACCA	.	140	70	153	0	.	141	G	61769252	A	G	61769252	2	3	172	1	0	0	0	0	0	0	0	1	3330	117	5	2		2	CHD7	8	61769252	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	6235458	61769252	84594770	114	21594											
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77895734	77895734	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PEX2	NM_000318	exon4	c.T681A	p.L227L	ACCAGTAAGAGGA	.	65	23	78	0	.	91	T	77895734	A	T	77895734	2	4	172	1	0	0	0	0	0	0	0	1	11745	349	13	4		4	PEX2	8	77895734	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	16126482	77895734	68468288	115	21595	131	3									
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77895736	77895736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PEX2	NM_000318	exon4	c.C679T	p.L227F	CAGTAAGAGGAAT	.	64	22	75	0	.	91	A	77895736	G	A	77895736	3	1	172	1	0	0	0	0	1	0	0	0	11745	942	33	3	242	3	PEX2	8	77895736	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	2	77895736	68468286	116	21596	131	3									
PEX2	5828	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	77895737	77895737	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PEX2	NM_000318	exon4	c.T678A	p.P226P	AGTAAGAGGAATA	.	65	23	75	0	.	91	T	77895737	A	T	77895737	2	4	172	1	0	0	0	0	0	0	0	1	11745	291	11	4		4	PEX2	8	77895737	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	1	77895737	68468285	117	21597	131	3									
PSKH2	85481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87076277	87076277	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PSKH2	NM_033126	exon2	c.A769T	p.S257C	ATCCGCTAAGTAA	.	88	36	119	2	.	385	A	87076277	T	A	87076277	3	1	172	1	0	0	0	0	1	0	0	0	12665	1522	53	4	394	4	PSKH2	8	87076277	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	9180540	87076277	59287745	118	21598											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110471959	110471959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PKHD1L1	NM_177531	exon47	c.A7140C	p.E2380D	GTTTGAAGCAAGA	.	208	83	278	0	.	145	C	110471959	A	C	110471959	3	2	172	1	0	0	0	0	1	0	0	0	11972	69	3	5	7326	5	PKHD1L1	8	110471959	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	23395682	110471959	35892063	119	21599											
HAS2	3037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	122626466	122626466	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HAS2	NM_005328	exon4	c.T1542A	p.V514V	CGTTCCAACAATT	.	115	47	164	2	.	236	T	122626466	A	T	122626466	2	4	172	1	0	0	0	0	0	0	0	1	6962	117	5	4		4	HAS2	8	122626466	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	12154507	122626466	23737556	120	21600											
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144698802	144698802	+	Silent	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TSTA3	NM_003313	exon2	c.A81C	p.V27V	ATCTGCTACCACC	.	95	43	83	0	.	91	G	144698802	T	G	144698802	2	3	172	1	0	0	0	0	0	0	0	1	16671	1509	53	5		5	TSTA3	8	144698802	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	22072336	144698802	1665220	121	21601											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17309125	17309125	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CNTLN	NM_017738	exon8	c.A1216T	p.T406S	AGTGTTACTAATC	.	368	153	509	0	.	91	T	17309125	A	T	17309125	3	4	172	1	0	0	0	0	1	0	0	0	3639	391	14	4	1276	4	CNTLN	9	17309125	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10		17309125	123904306	122	21602											
UBQLN1	29979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86284174	86284174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	UBQLN1	NM_053067	exon7	c.C1174A	p.Q392K	TGTTTTGCATCAG	.	87	32	117	0	.	90	T	86284174	G	T	86284174	3	4	172	1	0	0	0	0	1	0	0	0	16893	1328	46	3	615	3	UBQLN1	9	86284174	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	68975049	86284174	54929257	123	21603											
GARNL3	84253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130106562	130106562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GARNL3	NM_032293	exon15	c.A1300G	p.K434E	TCACCCAAGTCAG	.	178	79	230	0	.	516	G	130106562	A	G	130106562	3	3	172	1	0	0	0	0	1	0	0	0	6241	131	5	2	1358	2	GARNL3	9	130106562	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	43822388	130106562	11106869	124	21604											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131763862	131763862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NUP188	NM_015354	exon35	c.G3898A	p.G1300S	GAGGATGGTGACT	.	30	14	34	0	.	207	A	131763862	G	A	131763862	3	1	172	1	0	0	0	0	1	0	0	0	10758	1348	47	3	4036	3	NUP188	9	131763862	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	1657300	131763862	9449569	125	21605											
PFKFB3	5209	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6257273	6257273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PFKFB3	NM_004566	exon3	c.G292T	p.V98F	ATGAAAGTCCGGA	.	40	5	50	0	.	117	T	6257273	G	T	6257273	3	4	172	1	0	0	0	0	1	0	0	0	11762	1029	36	3	322	3	PFKFB3	10	6257273	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		6257273	129277474	126	21606											
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23244758	23244758	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARMC3	NM_173081	exon4	c.C189T	p.L63L	AACCCTCCTTGAA	.	171	88	213	0	.	90	T	23244758	C	T	23244758	2	4	172	1	0	0	0	0	0	0	0	1	952	842	30	3		3	ARMC3	10	23244758	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	16987485	23244758	112289989	127	21607											
SFTPA2	729238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81317058	81317058	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001098668	exon6	c.T654G	p.G218G	TCCCCGACCTGCA	.	322	261	455	1	.	.	C	81317058	A	C	81317058	2	2	172	1	0	0	0	0	0	0	0	1	14190	262	10	5		5	SFTPA2	10	81317058	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	58072300	81317058	54217689	128	21608											
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	100992230	100992230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HPSE2	NM_001166246	exon2	c.T323A	p.L108H	GGCGAAAGTCCCC	.	227	195	308	0	.	91	T	100992230	A	T	100992230	3	4	172	1	0	0	0	0	1	0	0	0	7345	72	3	4	1537	4	HPSE2	10	100992230	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	19675172	100992230	34542517	129	21609											
DEAF1	10522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	679715	679715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DEAF1	NM_021008	exon8	c.C1099A	p.Q367K	CGCCCTGGGCCGG	.	29	5	27	0	.	90	T	679715	G	T	679715	3	4	172	1	0	0	0	0	1	0	0	0	4380	1357	47	3	618	3	DEAF1	11	679715	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		679715	134326801	130	21610											
CDKN1C	1028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	2906437	2906437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CDKN1C	NM_000076	exon1	c.G283A	p.V95M	CCTGCACCGTCTC	.	54	17	52	0	.	838	T	2906437	C	T	2906437	3	4	172	1	0	0	0	0	1	0	0	0	3160	507	18	3	675	3	CDKN1C	11	2906437	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	2226722	2906437	132100079	131	21611											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3721964	3721964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NUP98	NM_016320	exon24	c.A3618T	p.L1206F	GTGTTTTAATTTG	.	139	34	120	0	.	703	A	3721964	T	A	3721964	3	1	172	1	0	0	0	0	1	0	0	0	10773	1751	61	4	1824	4	NUP98	11	3721964	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	815527	3721964	131284552	132	21612											
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661505	4661505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR51D1	NM_001004751	exon1	c.T485A	p.L162Q	CTGCCCTGACCAG	.	69	24	66	0	.	68	A	4661505	T	A	4661505	3	1	172	1	0	0	0	0	1	0	0	0	11093	1580	55	4	487	4	OR51D1	11	4661505	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	939541	4661505	130345011	133	21613											
OR51F1	256892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4790465	4790465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR51F1	NM_001004752	exon1	c.T683G	p.L228R	ATTCTGAGGACAG	.	185	56	167	0	.	70	C	4790465	A	C	4790465	3	2	172	1	0	0	0	0	1	0	0	0	11096	304	11	5	258	5	OR51F1	11	4790465	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	128960	4790465	130216051	134	21614											
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6261357	6261357	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CNGA4	NM_001037329	exon4	c.C333T	p.R111R	CGTTCGCACCTGG	.	75	23	75	0	.	91	T	6261357	C	T	6261357	2	4	172	1	0	0	0	0	0	0	0	1	3599	697	25	3		3	CNGA4	11	6261357	Silent	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	1470892	6261357	128745159	135	21615											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6292577	6292577	+	Missense_Mutation	SNP	C	C	T	rs201876764		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CCKBR	NM_176875	exon5	c.C1148T	p.A383V	CCTCGGCCTGTGT	.	97	30	94	0	.	574	T	6292577	C	T	6292577	3	4	172	1	0	0	0	0	1	0	0	0	2881	739	26	3	1166	3	CCKBR	11	6292577	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	31220	6292577	128713939	136	21616											
LRRC4C	57689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	40137430	40137430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LRRC4C	NM_001258419	exon7	c.C413A	p.T138N	GGGATGGTAGTAA	.	177	44	153	1	.	521	T	40137430	G	T	40137430	3	4	172	1	0	0	0	0	1	0	0	0	9008	1261	44	3	1513	3	LRRC4C	11	40137430	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	33844853	40137430	94869086	137	21617											
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58207528	58207528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR5B12	NM_001004733	exon1	c.T97A	p.Y33N	TGAGGTAGATGAA	.	155	40	160	0	.	68	T	58207528	A	T	58207528	3	4	172	1	0	0	0	0	1	0	0	0	11148	420	15	4	851	4	OR5B12	11	58207528	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	18070098	58207528	76798988	138	21618											
ZFP91	80829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58347078	58347078	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFP91	NM_001197051	exon1	c.G324A	p.K108K	GGGCAAGAAGAGT	.	47	12	41	0	.	91	A	58347078	G	A	58347078	2	1	172	1	0	0	0	0	0	0	0	1	17652	933	33	3		3	ZFP91	11	58347078	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	139550	58347078	76659438	139	21619											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76858873	76858873	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MYO7A	NM_001127179	exon4	c.G162A	p.T54T	CGCAACGCACATC	.	82	48	91	0	.	138	A	76858873	G	A	76858873	2	1	172	1	0	0	0	0	0	0	0	1	10082	1074	38	1		1	MYO7A	11	76858873	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	18511795	76858873	58147643	140	21620											
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89182674	89182674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NOX4	NM_001143836	exon4	c.A283T	p.R95W	ATCTCCTGGTTCT	.	318	107	242	0	.	515	A	89182674	T	A	89182674	3	1	172	1	0	0	0	0	1	0	0	0	10558	1579	55	4	1513	4	NOX4	11	89182674	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	12323801	89182674	45823842	141	21621											
SESN3	143686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94906456	94906456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SESN3	NM_144665	exon10	c.T1442C	p.L481P	GCATAAAGAAGTT	.	151	37	132	0	.	90	G	94906456	A	G	94906456	3	3	172	1	0	0	0	0	1	0	0	0	14126	72	3	2	40	2	SESN3	11	94906456	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	5723782	94906456	40100060	142	21622											
PGR	5241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100999049	100999049	+	Silent	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PGR	NM_000926	exon1	c.A753G	p.G251G	GGCTCCTCCTCCA	.	31	7	41	0	.	652	C	100999049	T	C	100999049	2	2	172	1	0	0	0	0	0	0	0	1	11805	1538	54	2		2	PGR	11	100999049	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	6092593	100999049	34007467	143	21623											
IL10RA	3587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117860245	117860245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	IL10RA	NM_001558	exon3	c.A277T	p.S93C	TACCACAGCAATG	.	130	39	98	1	.	91	T	117860245	A	T	117860245	3	4	172	1	0	0	0	0	1	0	0	0	7620	188	7	4	287	4	IL10RA	11	117860245	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	16861196	117860245	17146271	144	21624											
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119508959	119508959	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PVRL1	NM_203285	exon9	c.1228-2A>T	.	ACAACCTGGAAGA	.	50	9	35	0	.	90	A	119508959	T	A	119508959	5	1	172	1	0	0	0	0	0	0	1	0	12839	1594	55	4	154	4	PVRL1	11	119508959	Splice_Site	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	1648714	119508959	15497557	145	21625											
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676307	123676307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR6M1	NM_001005325	exon1	c.A751T	p.S251C	TGTTGCTCCCGTG	.	103	34	84	0	.	70	A	123676307	T	A	123676307	3	1	172	1	0	0	0	0	1	0	0	0	11205	1551	54	4	193	4	OR6M1	11	123676307	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	4167348	123676307	11330209	146	21626											
ACAD8	27034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134131002	134131002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ACAD8	NM_014384	exon7	c.A770G	p.N257S	TGGCCAACAGAAT	.	119	29	112	0	.	90	G	134131002	A	G	134131002	3	3	172	1	0	0	0	0	1	0	0	0	110	43	2	2	796	2	ACAD8	11	134131002	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	10454695	134131002	875514	147	21627											
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1192437	1192437	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ERC1	NM_178039	exon3	c.A777C	p.V259V	TTGTGTAGCAGAG	.	70	15	98	0	.	660	C	1192437	A	C	1192437	2	2	172	1	0	0	0	0	0	0	0	1	5210	407	15	5		5	ERC1	12	1192437	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10		1192437	132659458	148	21628											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	2904411	2904411	+	Splice_Site	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FKBP4	NM_002014	exon1	c.105+1G>A	.	CTGAAGGTGAGGG	.	135	53	185	0	.	226	A	2904411	G	A	2904411	5	1	172	1	0	0	0	0	0	0	1	0	5910	1275	44	3	108	3	FKBP4	12	2904411	Splice_Site	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	1711974	2904411	130947484	149	21629											
OR8S1	341568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48919696	48919696	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR8S1	NM_001005203	exon1	c.A282G	p.V94V	TTCAGTAGAGGGC	.	69	29	98	0	.	69	G	48919696	A	G	48919696	2	3	172	1	0	0	0	0	0	0	0	1	11246	407	15	2		2	OR8S1	12	48919696	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	46015285	48919696	84932199	150	21630											
KRT80	144501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	52579367	52579367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KRT80	NM_182507	exon2	c.A305T	p.Q102L	AGGGCTTGCACCT	.	14	6	16	0	.	226	A	52579367	T	A	52579367	3	1	172	1	0	0	0	0	1	0	0	0	8494	1812	63	4	1120	4	KRT80	12	52579367	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	3659671	52579367	81272528	151	21631											
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52635357	52635357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KRT7	NM_005556	exon5	c.G795T	p.K265N	GGTCAAGGCGCAG	.	57	22	85	0	.	90	T	52635357	G	T	52635357	3	4	172	1	0	0	0	0	1	0	0	0	8483	991	35	3	813	3	KRT7	12	52635357	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	55990	52635357	81216538	152	21632											
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57963063	57963063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KIF5A	NM_004984	exon10	c.A844T	p.S282C	CGTGACAGCAAAA	.	82	35	104	0	.	517	T	57963063	A	T	57963063	3	4	172	1	0	0	0	0	1	0	0	0	8305	188	7	4	882	4	KIF5A	12	57963063	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	5327706	57963063	75888832	153	21633											
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89998055	89998055	+	Silent	SNP	G	G	A	rs112647159		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ATP2B1	NM_001001323	exon15	c.C2511T	p.S837S	AACAATGCTTGTA	.	135	56	187	0	G|0.500;A|0.500	516	A	89998055	G	A	89998055	2	1	172	1	0	0	0	0	0	0	0	1	1139	1310	46	3		3	ATP2B1	12	89998055	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	32034992	89998055	43853840	154	21634											
CRADD	8738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94243784	94243784	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CRADD	NM_003805	exon3	c.A337T	p.S113C	CTCAACAGCTCCC	.	74	31	92	0	.	228	T	94243784	A	T	94243784	3	4	172	1	0	0	0	0	1	0	0	0	3845	188	7	4	343	4	CRADD	12	94243784	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	4245729	94243784	39608111	155	21635											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94972248	94972248	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TMCC3	NM_020698	exon3	c.A1053T	p.T351T	GTTGGCTGTCTCA	.	52	31	88	0	.	92	A	94972248	T	A	94972248	2	1	172	1	0	0	0	0	0	0	0	1	15991	1567	55	4		4	TMCC3	12	94972248	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	728464	94972248	38879647	156	21636											
C12orf52	84934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113629261	113629261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	C12orf52	NM_032848	exon4	c.G449T	p.G150V	CCAGGGGTAGCCA	.	46	16	59	0	.	90	T	113629261	G	T	113629261	3	4	172	1	0	0	0	0	1	0	0	0	1697	1261	44	3	455	3	C12orf52	12	113629261	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	18657013	113629261	20222634	157	21637											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	117655927	117655927	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NOS1	NM_001204218	exon29	c.C4315T	p.R1439X	ACGTTCGCAGGGT	.	144	43	179	0	.	154	A	117655927	G	A	117655927	4	1	172	1	0	0	0	0	0	1	0	0	10541	1095	38	1	99	1	NOS1	12	117655927	Nonsense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	4026666	117655927	16195968	158	21638											
RNF6	6049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26789149	26789149	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	RNF6,arm,malignant_melanoma,-2	RNF6	NM_183043	exon5	c.A870T	p.T290T	CCTCACTGTAACA	.	105	38	127	0	.	228	A	26789149	T	A	26789149	2	1	172	1	0	0	0	0	0	0	0	1	13498	1567	55	4		4	RNF6	13	26789149	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10		26789149	88380729	159	21639											
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29008090	29008090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FLT1	NM_002019	exon6	c.A679T	p.N227Y	TTGTATTGGCTGC	.	143	69	213	0	.	1406	A	29008090	T	A	29008090	3	1	172	1	0	0	0	0	1	0	0	0	5941	1812	63	4	3700	4	FLT1	13	29008090	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2218941	29008090	86161788	160	21640											
FREM2	341640	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39262723	39262723	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FREM2	NM_207361	exon1	c.A1242C	p.V414V	GGAGGTAGTGGAT	.	89	35	119	1	.	100	C	39262723	A	C	39262723	2	2	172	1	0	0	0	0	0	0	0	1	6045	407	15	5		5	FREM2	13	39262723	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	10254633	39262723	75907155	161	21641											
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103288606	103288606	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TPP2	NM_003291	exon13	c.T1542A	p.N514K	TCAGAATACATCA	.	167	61	204	0	.	92	A	103288606	T	A	103288606	3	1	172	1	0	0	0	0	1	0	0	0	16409	1403	49	4	1592	4	TPP2	13	103288606	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	64025883	103288606	11881272	162	21642											
SLC7A8	23428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23635745	23635745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC7A8	NM_012244	exon2	c.C156G	p.N52K	GATGATGTTCCCT	.	26	11	45	0	.	91	C	23635745	G	C	23635745	3	2	172	1	0	0	0	0	1	0	0	0	14704	1368	48	4	1491	4	SLC7A8	14	23635745	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		23635745	83713795	163	21643											
G2E3	55632	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31084590	31084590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	G2E3	NM_017769	exon14	c.A1709G	p.E570G	TTTTGGAGAAAAT	.	157	62	218	1	.	660	G	31084590	A	G	31084590	3	3	172	1	0	0	0	0	1	0	0	0	6140	304	11	2	1759	2	G2E3	14	31084590	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	7448845	31084590	76264950	164	21644											
HEATR4	399671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73989702	73989702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HEATR4	NM_203309	exon2	c.G155T	p.S52I	TGTGAGCTGAAGA	.	86	36	125	0	.	91	A	73989702	C	A	73989702	3	1	172	1	0	0	0	0	1	0	0	0	7030	797	28	3	2989	3	HEATR4	14	73989702	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	42905112	73989702	33359838	165	21645											
CPSF2	53981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92609350	92609350	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CPSF2	NM_017437	exon9	c.A852G	p.V284V	TTAGGTAGAATGG	.	165	65	207	0	.	92	G	92609350	A	G	92609350	2	3	172	1	0	0	0	0	0	0	0	1	3825	407	15	2		2	CPSF2	14	92609350	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	18619648	92609350	14740190	166	21646											
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104206739	104206739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PPP1R13B	NM_015316	exon12	c.C2014T	p.P672S	TGGTGGGGCTGAG	.	32	16	42	0	.	227	A	104206739	G	A	104206739	3	1	172	1	0	0	0	0	1	0	0	0	12357	1232	43	3	1282	3	PPP1R13B	14	104206739	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	11597389	104206739	3142801	167	21647											
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42139617	42139617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	JMJD7-PLA2G4B	NM_005090	exon24	c.A2723G	p.Q908R	AGCTCCAGCCTCG	.	42	16	60	0	.	135	G	42139617	A	G	42139617	3	3	172	1	0	0	0	0	1	0	0	0	7955	188	7	2	2817	2	JMJD7-PLA2G4B	15	42139617	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10		42139617	60391775	168	21648											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42185565	42185565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SPTBN5	NM_016642	exon2	c.A26G	p.H9R	CGAATGTGGCCCG	.	48	24	60	0	.	91	C	42185565	T	C	42185565	3	2	172	1	0	0	0	0	1	0	0	0	15121	1696	59	2	11161	2	SPTBN5	15	42185565	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	45948	42185565	60345827	169	21649											
PLA2G4E	123745	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	42342807	42342807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001206670	exon1	c.G95C	p.G32A	CTTCTTCCTGACC	.	91	44	113	0	.	.	G	42342807	C	G	42342807	3	3	172	1	0	0	0	0	1	0	0	0	12005	870	30	4		4	PLA2G4E	15	42342807	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	157242	42342807	60188585	170	21650											
FBN1	2200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48760297	48760297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FBN1	NM_000138	exon38	c.A4585T	p.T1529S	AGCGGGTATCTAT	.	161	65	221	1	.	92	A	48760297	T	A	48760297	3	1	172	1	0	0	0	0	1	0	0	0	5702	1638	57	4	4146	4	FBN1	15	48760297	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	6417490	48760297	53771095	171	21651											
ZNF609	23060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64967591	64967591	+	Silent	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF609	NM_015042	exon4	c.T2538G	p.S846S	ATACTCTGACATC	.	34	14	52	1	.	92	G	64967591	T	G	64967591	2	3	172	1	0	0	0	0	0	0	0	1	18032	1567	55	5		5	ZNF609	15	64967591	Silent	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	16207294	64967591	37563801	172	21652											
FSD2	123722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83437679	83437679	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FSD2	NM_001007122	exon9	c.T1506C	p.T502T	CTCCACAGTGTAC	.	75	34	65	0	.	90	G	83437679	A	G	83437679	2	3	172	1	0	0	0	0	0	0	0	1	6071	175	7	2		2	FSD2	15	83437679	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	18470088	83437679	19093713	173	21653											
MRPL46	26589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89008827	89008827	+	Missense_Mutation	SNP	G	G	C	rs146169028	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MRPL46	NM_022163	exon2	c.C406G	p.R136G	TTATGCGAGCTCC	.	57	22	64	0	G|1.000;A|0.000	90	C	89008827	G	C	89008827	3	2	172	1	0	0	0	0	1	0	0	0	9810	1058	37	4	445	4	MRPL46	15	89008827	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	5571148	89008827	13522565	174	21654											
ZNF174	7727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3458764	3458764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF174	NM_003450	exon3	c.G1069A	p.G357R	ACGTGCGGAGAGT	.	77	33	134	0	.	90	A	3458764	G	A	3458764	3	1	172	1	0	0	0	0	1	0	0	0	17741	1117	39	1	1163	1	ZNF174	16	3458764	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		3458764	86895989	175	21655											
SMG1	23049	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	18887703	18887703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SMG1	NM_015092	exon13	c.G1633T	p.A545S	CATGGGCTACAGC	.	201	90	270	0	.	1160	A	18887703	C	A	18887703	3	1	172	1	0	0	0	0	1	0	0	0	14795	797	28	3	9556	3	SMG1	16	18887703	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	15428939	18887703	71467050	176	21656											
SCNN1G	6340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23197855	23197855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SCNN1G	NM_001039	exon2	c.A263T	p.H88L	AAGTCCACTTCCG	.	28	14	49	0	.	158	T	23197855	A	T	23197855	3	4	172	1	0	0	0	0	1	0	0	0	13930	159	6	4	265	4	SCNN1G	16	23197855	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	4310152	23197855	67156898	177	21657											
SIAH1	6477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48395984	48395984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SIAH1	NM_001006610	exon2	c.A449C	p.E150A	CAGAGCTCTTCAT	.	88	37	136	0	.	415	G	48395984	T	G	48395984	3	3	172	1	0	0	0	0	1	0	0	0	14299	1551	54	5	496	5	SIAH1	16	48395984	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	25198129	48395984	41958769	178	21658											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65016064	65016064	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	CDH11,NS,carcinoma,-1	CDH11	NM_001797	exon8	c.C1140T	p.P380P	CATAGGGGGCTCA	.	58	43	125	0	.	852	A	65016064	G	A	65016064	2	1	172	1	0	0	0	0	0	0	0	1	3097	1219	43	3		3	CDH11	16	65016064	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	16620080	65016064	25338689	179	21659											
AARS	16	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70299543	70299543	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AARS	NM_001605	exon10	c.T1245C	p.Y415Y	GGTGTCATAGAGG	.	43	32	127	0	.	91	G	70299543	A	G	70299543	2	3	172	1	0	0	0	0	0	0	0	1	19	224	8	2		2	AARS	16	70299543	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	5283479	70299543	20055210	180	21660											
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18193874	18193874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TOP3A	NM_004618	exon13	c.A1594T	p.I532F	GACCAATGCCATG	.	28	11	51	0	.	228	A	18193874	T	A	18193874	3	1	172	1	0	0	0	0	1	0	0	0	16364	1464	51	4	1439	4	TOP3A	17	18193874	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10		18193874	63001336	181	21661											
TBC1D28	254272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18541690	18541690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TBC1D28	NM_001039397	exon8	c.G323A	p.G108D	GCCCGGCCCCGCA	.	133	54	164	0	.	91	T	18541690	C	T	18541690	3	4	172	1	0	0	0	0	1	0	0	0	15614	739	26	3	321	3	TBC1D28	17	18541690	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	347816	18541690	62653520	182	21662											
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19284705	19284705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MAPK7	NM_002749	exon4	c.A1183T	p.I395F	GAGGGCATCCGCC	.	44	17	95	0	.	1402	T	19284705	A	T	19284705	3	4	172	1	0	0	0	0	1	0	0	0	9282	217	8	4	1193	4	MAPK7	17	19284705	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	743015	19284705	61910505	183	21663											
MLLT6	4302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36868254	36868254	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MLLT6	NM_005937	exon7	c.G707C	p.R236T	ACGAGAGGGGCCA	.	121	55	181	0	.	659	C	36868254	G	C	36868254	3	2	172	1	0	0	0	0	1	0	0	0	9630	1000	35	4	733	4	MLLT6	17	36868254	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	17583549	36868254	44326956	184	21664											
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37371219	37371219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	STAC2	NM_198993	exon6	c.G757T	p.G253W	CAGGCCCCTCCTC	.	63	20	79	0	.	91	A	37371219	C	A	37371219	3	1	172	1	0	0	0	0	1	0	0	0	15239	623	22	3	502	3	STAC2	17	37371219	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	502965	37371219	43823991	185	21665											
PLEKHM1	9842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	43545720	43545720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PLEKHM1	NM_014798	exon5	c.A1163G	p.Q388R	ACAGGCTGCTGTA	.	118	39	174	0	.	90	C	43545720	T	C	43545720	3	2	172	1	0	0	0	0	1	0	0	0	12080	1580	55	2	2039	2	PLEKHM1	17	43545720	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	6174501	43545720	37649490	186	21666											
C17orf47	284083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56620661	56620661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	C17orf47	NM_001038704	exon1	c.T887A	p.L296H	TTATGAAGAGACT	.	189	55	169	0	.	135	T	56620661	A	T	56620661	3	4	172	1	0	0	0	0	1	0	0	0	1858	72	3	4	833	4	C17orf47	17	56620661	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	13074941	56620661	24574549	187	21667											
BCAS3	54828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59445783	59445783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	BCAS3	NM_001099432	exon24	c.G2566A	p.E856K	ACGGAGGAGGGCC	.	81	18	78	0	.	495	A	59445783	G	A	59445783	3	1	172	1	0	0	0	0	1	0	0	0	1352	1175	41	3	2656	3	BCAS3	17	59445783	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	2825122	59445783	21749427	188	21668											
NPTX1	4884	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	78450179	78450179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NPTX1	NM_002522	exon1	c.A68T	p.Q23L	AAATCCTGGGCCC	.	40	13	32	0	.	90	A	78450179	T	A	78450179	3	1	172	1	0	0	0	0	1	0	0	0	10602	1580	55	4	1250	4	NPTX1	17	78450179	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	19004396	78450179	2745031	189	21669											
MC4R	4160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	58039130	58039130	+	Silent	SNP	G	G	A	rs142925940		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MC4R	NM_005912	exon1	c.C453T	p.I151I	ATAGAAGATAGTA	.	63	20	99	0	G|1.000;A|0.000	522	A	58039130	G	A	58039130	2	1	172	1	0	0	0	0	0	0	0	1	9366	932	33	3		3	MC4R	18	58039130	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		58039130	20038118	190	21670											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63530135	63530135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CDH7	NM_004361	exon11	c.T1846A	p.C616S	CTCGCCTGTGTCT	.	64	28	99	0	.	94	A	63530135	T	A	63530135	3	1	172	1	0	0	0	0	1	0	0	0	3115	1580	55	4	1884	4	CDH7	18	63530135	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	5491005	63530135	14547113	191	21671											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1052055	1052055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ABCA7	NM_019112	exon22	c.G3077A	p.R1026H	TCCTGCGCCGTCA	.	49	21	61	0	.	98	A	1052055	G	A	1052055	3	1	172	1	0	0	0	0	1	0	0	0	37	1087	38	1	3159	1	ABCA7	19	1052055	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10		1052055	58076928	192	21672											
PIP5K1C	23396	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3648626	3648626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PIP5K1C	NM_001195733	exon9	c.A1208T	p.Y403F	CACCTGTAGGACT	.	104	48	176	1	.	267	A	3648626	T	A	3648626	3	1	172	1	0	0	0	0	1	0	0	0	11941	1638	57	4	838	4	PIP5K1C	19	3648626	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2596571	3648626	55480357	193	21673											
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3820200	3820200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFR2	NM_015174	exon11	c.C1720A	p.P574T	TGGCGGGTGACTC	.	52	20	84	0	.	70	T	3820200	G	T	3820200	3	4	172	1	0	0	0	0	1	0	0	0	17657	1261	44	3	1135	3	ZFR2	19	3820200	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	171574	3820200	55308783	194	21674											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074549	9074549	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MUC16	NM_024690	exon3	c.T12897A	p.I4299I	TGTCTCAATCTCT	.	29	23	100	1	.	566	T	9074549	A	T	9074549	2	4	172	1	0	0	0	0	0	0	0	1	9973	126	5	4		4	MUC16	19	9074549	Silent	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	5254349	9074549	50054434	195	21675											
SLC1A6	6511	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	15063777	15063777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC1A6	NM_005071	exon8	c.G1462T	p.E488X	TGTCTTCCGTGGG	.	148	41	199	1	.	186	A	15063777	C	A	15063777	4	1	172	1	0	0	0	0	0	1	0	0	14436	864	30	3	240	3	SLC1A6	19	15063777	Nonsense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	5989228	15063777	44065206	196	21676											
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19790802	19790802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF101	NM_033204	exon4	c.A1004G	p.E335G	CTGGAGAAAGACC	.	79	33	96	0	.	92	G	19790802	A	G	19790802	3	3	172	1	0	0	0	0	1	0	0	0	17711	246	9	2	1018	2	ZNF101	19	19790802	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	4727025	19790802	39338181	197	21677											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31038966	31038967	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	.	.	.	p.G814L	CTGTCTGGGCAAC	.	133	62	169	0	.	.	TT	31038967	GG	TT	31038966	3	4	172	1	0	0	0	0	1	0	0	0	17971	1348	47	3	2450	3	ZNF536	19	31038966	Missense_Mutation	DNP	GG	TCGA-LG-A6GG-01A-11D-A30V-10	11248164	31038966	28090017	198	21678											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	31768760	31768760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TSHZ3	NM_020856	exon2	c.A1939C	p.S647R	CGCTGCTACATGG	.	48	21	74	0	.	232	G	31768760	T	G	31768760	3	3	172	1	0	0	0	0	1	0	0	0	16622	1522	53	5	1310	5	TSHZ3	19	31768760	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	729794	31768760	27360223	199	21679											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36269405	36269405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARHGAP33	NM_052948	exon5	c.C310T	p.R104C	GACTTTCGTTCCC	.	38	14	57	0	.	229	T	36269405	C	T	36269405	3	4	172	1	0	0	0	0	1	0	0	0	882	884	31	1	328	1	ARHGAP33	19	36269405	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	4500645	36269405	22859578	200	21680											
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38024278	38024278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF793	NM_001013659	exon7	c.G211A	p.A71T	GGTGAGGCAGCAT	.	128	60	135	0	.	68	A	38024278	G	A	38024278	3	1	172	1	0	0	0	0	1	0	0	0	18162	1203	42	3	221	3	ZNF793	19	38024278	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	1754873	38024278	21104705	201	21681											
SERTAD3	29946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40947776	40947776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SERTAD3	NM_013368	exon2	c.T212A	p.L71Q	GGAGCCAGGCGAA	.	38	13	52	0	.	90	T	40947776	A	T	40947776	3	4	172	1	0	0	0	0	1	0	0	0	14122	188	7	4	382	4	SERTAD3	19	40947776	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	2923498	40947776	18181207	202	21682											
DMRTC2	63946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42353305	42353305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DMRTC2	NM_001040283	exon6	c.736delC	p.P246fs	CAAGGGCCCCCTA	.	67	29	63	0	.	90	-	42353305	C	-	42353305	7	5	172	1	0	1	0	1	0	0	0	0	4591	739	26	0	754	0	DMRTC2	19	42353305	Frame_Shift_Del	DEL	C	TCGA-LG-A6GG-01A-11D-A30V-10	1405529	42353305	16775678	203	21683											
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44981527	44981527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF180	NM_013256	exon5	c.A1171C	p.S391R	TCCGGCTGAAGGA	.	82	37	93	0	.	92	G	44981527	T	G	44981527	3	3	172	1	0	0	0	0	1	0	0	0	17745	1580	55	5	911	5	ZNF180	19	44981527	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	2628222	44981527	14147456	204	21684											
PTGIR	5739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47124692	47124692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PTGIR	NM_000960	exon3	c.C1006T	p.P336S	CAGAGGGGGCCCT	.	104	49	146	0	.	522	A	47124692	G	A	47124692	3	1	172	1	0	0	0	0	1	0	0	0	12751	1232	43	3	158	3	PTGIR	19	47124692	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	2143165	47124692	12004291	205	21685											
CACNG8	59283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54485674	54485674	+	Silent	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CACNG8	NM_031895	exon4	c.G849T	p.P283P	CGAGCCGTCGCCG	.	26	9	22	0	.	90	T	54485674	G	T	54485674	2	4	172	1	0	0	0	0	0	0	0	1	2563	1132	40	1		1	CACNG8	19	54485674	Silent	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	7360982	54485674	4643309	206	21686											
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58018610	58018610	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF773	NM_198542	exon4	c.G1147C	p.G383R	CACACTGGAGAAA	.	128	55	222	0	.	91	C	58018610	G	C	58018610	3	2	172	1	0	0	0	0	1	0	0	0	18143	1349	47	4	1161	4	ZNF773	19	58018610	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	3532936	58018610	1110373	207	21687											
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23548859	23548859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CST9L	NM_080610	exon1	c.T229C	p.W77R	CCTTCCAGGAATT	.	101	25	82	0	.	90	G	23548859	A	G	23548859	3	3	172	1	0	0	0	0	1	0	0	0	3980	188	7	2	226	2	CST9L	20	23548859	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10		23548859	39476661	208	21688											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40944529	40944529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PTPRT	NM_007050	exon12	c.T1973A	p.L658H	GAATCGAGGCTGG	.	180	63	172	0	.	664	T	40944529	A	T	40944529	3	4	172	1	0	0	0	0	1	0	0	0	12812	304	11	4	2493	4	PTPRT	20	40944529	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	17395670	40944529	22080991	209	21689											
WFDC3	140686	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44417609	44417609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	WFDC3	NM_080614	exon3	c.A172C	p.T58P	CTGTGGTGCAGCA	.	92	24	78	1	.	90	G	44417609	T	G	44417609	3	3	172	1	0	0	0	0	1	0	0	0	17350	1696	59	5	543	5	WFDC3	20	44417609	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	3473080	44417609	18607911	210	21690											
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57599165	57599165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TUBB1	NM_030773	exon4	c.T683A	p.L228Q	ACCACCTAGTGTC	.	101	27	85	0	.	227	A	57599165	T	A	57599165	3	1	172	1	0	0	0	0	1	0	0	0	16750	1522	53	4	697	4	TUBB1	20	57599165	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	13181556	57599165	5426355	211	21691											
MYT1	4661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62837052	62837052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MYT1	NM_004535	exon6	c.T296A	p.V99E	CTGAGGTGAAGGA	.	103	30	106	1	.	704	A	62837052	T	A	62837052	3	1	172	1	0	0	0	0	1	0	0	0	10106	1696	59	4	310	4	MYT1	20	62837052	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10	5237887	62837052	188468	212	21692											
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47722400	47722400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	C21orf58	NM_058180	exon7	c.A812T	p.Q271L	CCTACCTGCAGGG	.	81	57	163	0	.	91	A	47722400	T	A	47722400	3	1	172	1	0	0	0	0	1	0	0	0	2129	1594	55	4	164	4	C21orf58	21	47722400	Missense_Mutation	SNP	T	TCGA-LG-A6GG-01A-11D-A30V-10		47722400	407495	213	21693											
TCN2	6948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31006953	31006953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TCN2	NM_001184726	exon2	c.A160G	p.I54V	CCCAGCATCTATG	.	76	29	112	0	.	90	G	31006953	A	G	31006953	3	3	172	1	0	0	0	0	1	0	0	0	15704	217	8	2	166	2	TCN2	22	31006953	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10		31006953	20297613	214	21694											
TUBGCP6	85378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50682173	50682173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TUBGCP6	NM_020461	exon1	c.C716T	p.A239V	AGGTCCGCATTGT	.	32	4	51	0	.	93	A	50682173	G	A	50682173	3	1	172	1	0	0	0	0	1	0	0	0	16767	1087	38	1	4843	1	TUBGCP6	22	50682173	Missense_Mutation	SNP	G	TCGA-LG-A6GG-01A-11D-A30V-10	19675220	50682173	622393	215	21695											
PRDX4	10549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23693213	23693213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PRDX4	NM_006406	exon3	c.C466G	p.H156D	TTTACCCATTTGG	.	577	228	695	0	.	131	G	23693213	C	G	23693213	3	3	172	1	0	0	0	0	1	0	0	0	12467	594	21	4	476	4	PRDX4	23	23693213	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10		23693213	131577347	216	21696											
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54982655	54982655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PFKFB1	NM_002625	exon7	c.T569G	p.L190R	TCTTCCAGAACCT	.	78	9	120	0	.	131	C	54982655	A	C	54982655	3	2	172	1	0	0	0	0	1	0	0	0	11760	188	7	5	878	5	PFKFB1	23	54982655	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	31289442	54982655	100287905	217	21697											
DIAPH2	1730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	95940062	95940062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DIAPH2	NM_007309	exon1	c.A5C	p.E2A	AGATGGAGCAGCC	.	166	73	217	0	.	133	C	95940062	A	C	95940062	3	2	172	1	0	0	0	0	1	0	0	0	4519	304	11	5	7	5	DIAPH2	23	95940062	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	40957407	95940062	59330498	218	21698											
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291161	141291161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MAGEC2	NM_016249	exon3	c.T613A	p.F205I	CACAGAAGTGGTC	.	137	60	171	0	.	193	T	141291161	A	T	141291161	3	4	172	1	0	0	0	0	1	0	0	0	9181	72	3	4	512	4	MAGEC2	23	141291161	Missense_Mutation	SNP	A	TCGA-LG-A6GG-01A-11D-A30V-10	45351099	141291161	13979399	219	21699											
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150349506	150349506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR50	NM_004224	exon2	c.C1451A	p.A484D	TCTCTGCTGGCAG	.	57	22	81	0	.	176	A	150349506	C	A	150349506	3	1	172	1	0	0	0	0	1	0	0	0	6697	797	28	3	1457	3	GPR50	23	150349506	Missense_Mutation	SNP	C	TCGA-LG-A6GG-01A-11D-A30V-10	9058345	150349506	4921054	220	21700											
TNFRSF4	7293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1148033	1148033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TNFRSF4	NM_003327	exon4	c.G422T	p.C141F	GGCTTGCAGGCCT	.	47	18	35	0	.	227	A	1148033	C	A	1148033	3	1	173	1	0	0	0	0	1	0	0	0	16294	710	25	3	427	3	TNFRSF4	1	1148033	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10		1148033	248102588	1	21701											
KIAA1751	85452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1890603	1890603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KIAA1751	NM_001080484	exon16	c.G1807C	p.G603R	ACTCGCCCGTCTG	.	40	12	67	0	.	69	G	1890603	C	G	1890603	3	3	173	1	0	0	0	0	1	0	0	0	8256	623	22	4	493	4	KIAA1751	1	1890603	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	742570	1890603	247360018	2	21702											
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11591710	11591710	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PTCHD2	NM_020780	exon17	c.C3318T	p.H1106H	GTCCCACGGGGCA	.	96	31	104	0	.	209	T	11591710	C	T	11591710	2	4	173	1	0	0	0	0	0	0	0	1	12733	535	19	1		1	PTCHD2	1	11591710	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	9701107	11591710	237658911	3	21703											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22902830	22902830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EPHA8	NM_020526	exon3	c.G280A	p.A94T	GACGGCGCCCGGC	.	177	76	194	0	.	1380	A	22902830	G	A	22902830	3	1	173	1	0	0	0	0	1	0	0	0	5173	1087	38	1	290	1	EPHA8	1	22902830	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	11311120	22902830	226347791	4	21704											
CD164L2	388611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	27709145	27709145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CD164L2	NM_207397	exon2	c.G101A	p.R34Q	AAGCCTCGAGCTC	.	60	26	76	0	.	90	T	27709145	C	T	27709145	3	4	173	1	0	0	0	0	1	0	0	0	2970	884	31	1	436	1	CD164L2	1	27709145	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	4806315	27709145	221541476	5	21705											
SESN2	83667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28595721	28595721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SESN2	NM_031459	exon2	c.G118A	p.G40S	CGGCGAGGCCCTC	.	30	9	50	0	.	230	A	28595721	G	A	28595721	3	1	173	1	0	0	0	0	1	0	0	0	14125	1000	35	3	124	3	SESN2	1	28595721	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	886576	28595721	220654900	6	21706											
CC2D1B	200014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52830265	52830265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CC2D1B	NM_032449	exon2	c.G28T	p.G10C	GAGGGCCCTTCCG	.	22	8	44	0	.	92	A	52830265	C	A	52830265	3	1	173	1	0	0	0	0	1	0	0	0	2727	623	22	3	2640	3	CC2D1B	1	52830265	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	24234544	52830265	196420356	7	21707											
PRKACB	5567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	84662426	84662427	+	Splice_Site	INS	-	-	TA	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PRKACB	NM_002731	exon6	c.546+1->TA	.	ATCCAGGTATGAC	.	124	50	155	0	.	1083	TA	84662427	-	TA	84662426	8	5	173	1	0	1	1	0	0	0	1	0	12498	1275	44	0	760	0	PRKACB	1	84662426	Splice_Site	INS	-	TCGA-MI-A75C-01A-11D-A32G-10	31832161	84662426	164588195	8	21708											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109812678	109812678	+	Missense_Mutation	SNP	A	A	G	rs78104849		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CELSR2	NM_001408	exon23	c.A7231G	p.I2411V	CACGGCATCCGAC	.	99	37	123	0	A|0.999;G|0.000	526	G	109812678	A	G	109812678	3	3	173	1	0	0	0	0	1	0	0	0	3222	217	8	2	7321	2	CELSR2	1	109812678	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	25150252	109812678	139437943	9	21709											
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	146747921	146747921	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHD1L	NM_004284	exon14	c.G1539A	p.Q513Q	CCTCCAGGTATGA	.	66	22	73	0	.	231	A	146747921	G	A	146747921	2	1	173	1	0	0	0	0	0	0	0	1	3324	1014	35	3		3	CHD1L	1	146747921	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	36935243	146747921	102502700	10	21710											
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152323836	152323836	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FLG2	NM_001014342	exon3	c.G6426T	p.G2142G	CTGTCTCCCGTGA	.	188	32	129	0	.	151	A	152323836	C	A	152323836	2	1	173	1	0	0	0	0	0	0	0	1	5923	842	30	3		3	FLG2	1	152323836	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	5575915	152323836	96926785	11	21711											
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	155891367	155891367	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KIAA0907	NM_014949	exon10	c.T1065G	p.Y355X	GGATGGATAATAT	.	239	201	180	0	.	90	C	155891367	A	C	155891367	4	2	173	1	0	0	0	0	0	1	0	0	8199	340	12	5	799	5	KIAA0907	1	155891367	Nonsense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	3567531	155891367	93359254	12	21712											
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171178027	171178027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FMO2	NM_001460	exon9	c.T1351A	p.S451T	TTCTGCTCTCTCT	.	119	25	85	0	.	91	A	171178027	T	A	171178027	3	1	173	1	0	0	0	0	1	0	0	0	5955	1551	54	4	1381	4	FMO2	1	171178027	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	15286660	171178027	78072594	13	21713											
ZNF695	57116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247150556	247150556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_020394	exon4	c.T1261C	p.S421P	GGTATGAAAACCA	.	59	15	34	0	.	.	G	247150556	A	G	247150556	3	3	173	1	0	0	0	0	1	0	0	0	18095	246	9	2	290	2	ZNF695	1	247150556	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	75972529	247150556	2100065	14	21714											
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263223	248263223	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR2L13	NM_175911	exon3	c.C546T	p.A182A	CCCAGCCATGTTG	.	153	68	111	0	.	70	T	248263223	C	T	248263223	2	4	173	1	0	0	0	0	0	0	0	1	11006	581	21	3		3	OR2L13	1	248263223	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	1112667	248263223	987398	15	21715											
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248366590	248366590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR2M3	NM_001004689	exon1	c.T221C	p.I74T	TGCTCATCTGCAC	.	260	46	192	0	.	70	C	248366590	T	C	248366590	3	2	173	1	0	0	0	0	1	0	0	0	11011	1435	50	2	223	2	OR2M3	1	248366590	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	103367	248366590	884031	16	21716											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	1459934	1459934	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TPO	NM_175719	exon7	c.G699A	p.W233X	GGCATGGGGACAA	.	71	22	101	0	.	332	A	1459934	G	A	1459934	4	1	173	1	0	0	0	0	0	1	0	0	16407	1241	43	3	721	3	TPO	2	1459934	Nonsense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		1459934	241739439	17	21717											
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	29222109	29222109	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FAM179A	NM_199280	exon4	c.G202T	p.G68X	CTGCGTGGACTCG	.	59	15	78	0	.	26	T	29222109	G	T	29222109	4	4	173	1	0	0	0	0	0	1	0	0	5505	1349	47	3	212	3	FAM179A	2	29222109	Nonsense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	27762175	29222109	213977264	18	21718											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29295459	29295459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	C2orf71	NM_001029883	exon1	c.G1669T	p.V557L	AGGGCACAGGGAC	.	48	16	70	0	.	91	A	29295459	C	A	29295459	3	1	173	1	0	0	0	0	1	0	0	0	2191	478	17	3	2205	3	C2orf71	2	29295459	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	73350	29295459	213903914	19	21719											
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55844336	55844336	+	Missense_Mutation	SNP	G	G	A	rs200421664	byfrequency	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SMEK2	NM_001122964	exon1	c.C86T	p.S29F	TAAGTGGAGGAGA	.	69	23	104	0	G|0.997;A|0.003	228	A	55844336	G	A	55844336	3	1	173	1	0	0	0	0	1	0	0	0	14794	1174	41	3	2531	3	SMEK2	2	55844336	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	26548877	55844336	187355037	20	21720											
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100046405	100046405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	REV1	NM_016316	exon9	c.A1444G	p.I482V	CTGGTATATCTGC	.	169	62	246	0	.	92	C	100046405	T	C	100046405	3	2	173	1	0	0	0	0	1	0	0	0	13239	1406	49	2	2371	2	REV1	2	100046405	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	44202069	100046405	143152968	21	21721											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168102933	168102933	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	XIRP2	NM_152381	exon9	c.C5031T	p.I1677I	AGGCATCTTAATT	.	163	32	189	0	.	104	T	168102933	C	T	168102933	2	4	173	1	0	0	0	0	0	0	0	1	17427	903	32	3		3	XIRP2	2	168102933	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	68056528	168102933	75096440	22	21722											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196866480	196866480	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DNAH7	NM_018897	exon11	c.T1092A	p.A364A	TGCAGCAGCACAG	.	112	41	135	0	.	102	T	196866480	A	T	196866480	2	4	173	1	0	0	0	0	0	0	0	1	4606	175	7	4		4	DNAH7	2	196866480	Silent	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	28763547	196866480	46332893	23	21723											
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202254174	202254174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TRAK2	NM_015049	exon12	c.G1246A	p.G416S	AGCGGCCCCGTGT	.	60	14	47	0	.	90	T	202254174	C	T	202254174	3	4	173	1	0	0	0	0	1	0	0	0	16447	623	22	3	1518	3	TRAK2	2	202254174	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	5387694	202254174	40945199	24	21724											
FZD5	7855	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208632778	208632778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FZD5	NM_003468	exon2	c.C686A	p.A229D	TCGTCGGCACTGA	.	70	32	70	1	.	660	T	208632778	G	T	208632778	3	4	173	1	0	0	0	0	1	0	0	0	6133	1203	42	3	1075	3	FZD5	2	208632778	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	6378604	208632778	34566595	25	21725											
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	225266002	225266002	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FAM124B	NM_024785	exon1	c.A484T	p.R162X	CTTCTCTCTGCAG	.	82	30	69	0	.	92	A	225266002	T	A	225266002	4	1	173	1	0	0	0	0	0	1	0	0	5426	1559	54	4	982	4	FAM124B	2	225266002	Nonsense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	16633224	225266002	17933371	26	21726											
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234442150	234442150	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	USP40	NM_018218	exon10	c.A1479G	p.K493K	CTGGGATTTCCGA	.	107	26	123	0	.	455	C	234442150	T	C	234442150	2	2	173	1	0	0	0	0	0	0	0	1	17069	1490	52	2		2	USP40	2	234442150	Silent	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	9176148	234442150	8757223	27	21727											
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9101941	9101941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SRGAP3	NM_014850	exon6	c.A775C	p.I259L	CATGGATGTAGTA	.	83	33	103	0	.	344	G	9101941	T	G	9101941	3	3	173	1	0	0	0	0	1	0	0	0	15146	1464	51	5	2627	5	SRGAP3	3	9101941	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		9101941	188920489	28	21728											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	68	27	61	0	.	24361	T	41268766	A	T	41268766	3	4	173	1	0	0	0	0	1	0	0	0	4016	14	1	4	1026	4	CTNNB1	3	41268766	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	32166825	41268766	156753664	29	21729											
SLCO2A1	6578	broad.mit.edu;bcgsc.ca	37	3	133673920	133673920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SLCO2A1	NM_005630	exon4	c.T515C	p.L172P	ACCATCAGGCCCC	.	106	5	96	0	.	90	G	133673920	A	G	133673920	3	3	173	1	0	0	0	0	1	0	0	0	14726	188	7	2	1460	2	SLCO2A1	3	133673920	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	92405154	133673920	64348510	30	21730											
PCYT1A	5130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195975135	195975135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PCYT1A	NM_005017	exon5	c.G277T	p.A93S	CTCGGGCGTGACC	.	63	26	80	0	.	90	A	195975135	C	A	195975135	3	1	173	1	0	0	0	0	1	0	0	0	11610	768	27	1	850	1	PCYT1A	3	195975135	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	62301215	195975135	2047295	31	21731											
ZNF718	255403	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	59395	59395	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001039127	exon2	c.C76T	p.Q26X	GCCCAGCAGAATT	.	226	13	268	0	.	.	T	59395	C	T	59395	4	4	173	1	0	0	0	0	0	1	0	0	18117	711	25	3	82	3	ZNF718	4	59395	Nonsense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10		59395	191094881	32	21732											
RGS12	6002	broad.mit.edu;mdanderson.org	37	4	3415912	3415912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RGS12	NM_002926	exon5	c.T2134A	p.W712R	GCCAGCTGGGCCG	.	11	3	24	0	.	226	A	3415912	T	A	3415912	3	1	173	1	0	0	0	0	1	0	0	0	13295	1580	55	4	2206	4	RGS12	4	3415912	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	3356517	3415912	187738364	33	21733											
SFRP2	6423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154709533	154709533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SFRP2	NM_003013	exon1	c.G455T	p.C152F	GGGATGCAAAGGT	.	57	25	60	0	.	659	A	154709533	C	A	154709533	3	1	173	1	0	0	0	0	1	0	0	0	14162	710	25	3	444	3	SFRP2	4	154709533	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	151293621	154709533	36444743	34	21734											
STOX2	56977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184931082	184931082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	STOX2	NM_020225	exon3	c.G1091A	p.R364Q	CTCATCGGAAGTC	.	47	21	89	0	.	22	A	184931082	G	A	184931082	3	1	173	1	0	0	0	0	1	0	0	0	15319	1116	39	1	1101	1	STOX2	4	184931082	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	30221549	184931082	6223194	35	21735											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816091	82816091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	VCAN	NM_004385	exon7	c.T1966C	p.F656L	GAATTGTTTCCTT	.	60	19	89	0	.	238	C	82816091	T	C	82816091	3	2	173	1	0	0	0	0	1	0	0	0	17135	1725	60	2	1988	2	VCAN	5	82816091	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		82816091	98099169	36	21736											
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111598279	111598279	+	Splice_Site	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EPB41L4A	NM_022140	exon8	c.555-1G>A	.	TGACCCCTACACC	.	61	20	57	0	.	91	T	111598279	C	T	111598279	5	4	173	1	0	0	0	0	0	0	1	0	5155	695	24	3	1574	3	EPB41L4A	5	111598279	Splice_Site	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	28782188	111598279	69316981	37	21737											
SLC12A2	6558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127466833	127466833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SLC12A2	NM_001046	exon5	c.G1123T	p.A375S	GCCTTTGCCAACG	.	123	48	208	1	.	94	T	127466833	G	T	127466833	3	4	173	1	0	0	0	0	1	0	0	0	14383	1319	46	3	1141	3	SLC12A2	5	127466833	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	15868554	127466833	53448427	38	21738											
SAR1B	51128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133945276	133945276	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SAR1B	NM_001033503	exon6	c.A333T	p.S111S	TTCTTTTGACTCT	.	78	29	94	0	.	227	A	133945276	T	A	133945276	2	1	173	1	0	0	0	0	0	0	0	1	13840	1799	63	4		4	SAR1B	5	133945276	Silent	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	6478443	133945276	46969984	39	21739											
TNIP1	10318	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150441768	150441768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TNIP1	NM_001252385	exon4	c.G277T	p.D93Y	TTGAGTCCTTTCC	.	60	28	80	1	.	91	A	150441768	C	A	150441768	3	1	173	1	0	0	0	0	1	0	0	0	16311	855	30	3	1693	3	TNIP1	5	150441768	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	16496492	150441768	30473492	40	21740											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	157053726	157053726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SOX30	NM_007017	exon4	c.A1391G	p.H464R	AGGGCATGTACTG	.	48	17	39	0	.	91	C	157053726	T	C	157053726	3	2	173	1	0	0	0	0	1	0	0	0	14952	1464	51	2	381	2	SOX30	5	157053726	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	6611958	157053726	23861534	41	21741											
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161113294	161113294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GABRA6	NM_000811	exon2	c.A97G	p.S33G	AACGTCAGTCGGA	.	59	23	89	0	.	163	G	161113294	A	G	161113294	3	3	173	1	0	0	0	0	1	0	0	0	6165	188	7	2	103	2	GABRA6	5	161113294	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	4059568	161113294	19801966	42	21742											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12120854	12120854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HIVEP1	NM_002114	exon4	c.G826T	p.A276S	CAAGGGGCAATGC	.	82	36	102	0	.	139	T	12120854	G	T	12120854	3	4	173	1	0	0	0	0	1	0	0	0	7186	1203	42	3	836	3	HIVEP1	6	12120854	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		12120854	158994213	43	21743											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30681730	30681731	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MDC1	NM_014641	exon3	c.366_367del	p.122_123del	CAGCAAAGAGAAT	.	72	25	98	0	.	273	-	30681731	AG	-	30681730	7	5	173	1	0	1	0	1	0	0	0	0	9403	72	3	0	5954	0	MDC1	6	30681730	Frame_Shift_Del	DEL	AG	TCGA-MI-A75C-01A-11D-A32G-10	18560876	30681730	140433337	44	21744											
C6orf226	441150	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42858426	42858426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001008739	exon1	c.T101C	p.L34P	CCCGGGAGTTCCT	.	44	16	53	1	.	.	G	42858426	A	G	42858426	3	3	173	1	0	0	0	0	1	0	0	0	2359	304	11	2	208	2	C6orf226	6	42858426	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	12176696	42858426	128256641	45	21745											
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155498070	155498070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TIAM2	NM_012454	exon9	c.C2482T	p.P828S	ATCAAGCCAGAGC	.	72	30	71	0	.	93	T	155498070	C	T	155498070	3	4	173	1	0	0	0	0	1	0	0	0	15888	739	26	3	2508	3	TIAM2	6	155498070	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	112639644	155498070	15616997	46	21746											
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107580787	107580787	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LAMB1	NM_002291	exon25	c.C3408T	p.P1136P	GCCCCTGGGGTCA	.	42	18	34	0	.	97	A	107580787	G	A	107580787	2	1	173	1	0	0	0	0	0	0	0	1	8610	1335	47	3		3	LAMB1	7	107580787	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		107580787	51557876	47	21747											
DPYSL2	1808	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	26485436	26485436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DPYSL2	NM_001197293	exon7	c.G985T	p.V329L	GGACATGTGCTGA	.	25	5	63	0	.	153	T	26485436	G	T	26485436	3	4	173	1	0	0	0	0	1	0	0	0	4747	1377	48	3	696	3	DPYSL2	8	26485436	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		26485436	119878586	48	21748											
STMN4	81551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27099966	27099966	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	STMN4	NM_030795	exon3	c.C57T	p.F19F	GGAGCAGAACAAG	.	47	29	56	0	.	154	A	27099966	G	A	27099966	2	1	173	1	0	0	0	0	0	0	0	1	15310	933	33	3		3	STMN4	8	27099966	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	614530	27099966	119264056	49	21749											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	55533949	55533949	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RP1	NM_006269	exon2	c.C423T	p.P141P	CCACCCCGTAGCC	.	109	25	47	0	.	102	T	55533949	C	T	55533949	2	4	173	1	0	0	0	0	0	0	0	1	13532	639	23	1		1	RP1	8	55533949	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	28433983	55533949	90830073	50	21750											
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	76471204	76471204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HNF4G	NM_004133	exon8	c.A1025T	p.Q342L	TTGAGCAAATACA	.	136	20	78	0	.	187	T	76471204	A	T	76471204	3	4	173	1	0	0	0	0	1	0	0	0	7254	130	5	4	1055	4	HNF4G	8	76471204	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	20937255	76471204	69892818	51	21751											
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113304861	113304861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CSMD3	NM_198123	exon55	c.C8693A	p.T2898K	GAGAATGTTACCA	.	223	24	97	1	.	1132	T	113304861	G	T	113304861	3	4	173	1	0	0	0	0	1	0	0	0	3946	1377	48	3	2498	3	CSMD3	8	113304861	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	36833657	113304861	33059161	52	21752											
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu	37	8	128428177	128428199	+	Frame_Shift_Del	DEL	ATGGGGGGCGGAGCCGGGCTGGG	ATGGGGGGCGGAGCCGGGCTGGG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	ATGGGGGGCGGAGCCGGGCTGGG	ATGGGGGGCGGAGCCGGGCTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001159542	exon1	c.66_88del	p.22_30del	TGGGCCATGGGGG	.	76	0	57	0	.	.	-	128428199	ATGGGGGGCGGAGCCGGGCTGGG	-	128428177	7	5	173	1	0	1	0	1	0	0	0	0	12282	204	8	0	68	0	POU5F1B	8	128428177	Frame_Shift_Del	DEL	ATGGGGGGCGGAGCCGGGCTGGG	TCGA-MI-A75C-01A-11D-A32G-10	15123316	128428177	17935845	53	21753											
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143994269	143994269	+	Missense_Mutation	SNP	A	A	G	rs28930074		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CYP11B2	NM_000498	exon7	c.T1154C	p.V385A	CTCACCACTCGCT	.	131	20	68	0	.	90	G	143994269	A	G	143994269	3	3	173	1	0	0	0	0	1	0	0	0	4146	159	6	2	369	2	CYP11B2	8	143994269	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	15566092	143994269	2369753	54	21754											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32543636	32543636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TOPORS	NM_005802	exon3	c.T887C	p.L296S	GGGACTAATCTGT	.	35	9	31	0	.	230	G	32543636	A	G	32543636	3	3	173	1	0	0	0	0	1	0	0	0	16367	372	13	2	2254	2	TOPORS	9	32543636	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10		32543636	108669795	55	21755											
RECK	8434	hgsc.bcm.edu;broad.mit.edu	37	9	36116999	36116999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RECK	NM_021111	exon17	c.A2078T	p.Q693L	AACCACAGGTCTG	.	78	4	93	0	.	93	T	36116999	A	T	36116999	3	4	173	1	0	0	0	0	1	0	0	0	13200	188	7	4	2144	4	RECK	9	36116999	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	3573363	36116999	105096432	56	21756											
ANXA1	301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	75782426	75782426	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANXA1	NM_000700	exon11	c.A816T	p.T272T	CGCCACAAGCAAA	.	123	9	150	0	.	650	T	75782426	A	T	75782426	2	4	173	1	0	0	0	0	0	0	0	1	714	117	5	4		4	ANXA1	9	75782426	Silent	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	39665427	75782426	65431005	57	21757											
OR13C9	286362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107379836	107379836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR13C9	NM_001001956	exon1	c.C650A	p.S217Y	GAGTAAGAGATAA	.	52	21	71	0	.	68	T	107379836	G	T	107379836	3	4	173	1	0	0	0	0	1	0	0	0	10939	942	33	3	309	3	OR13C9	9	107379836	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	31597410	107379836	33833595	58	21758											
TAL2	6887	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108425042	108425042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TAL2	NM_005421	exon1	c.G265T	p.D89Y	CTGGAGGACAGAA	.	76	36	91	1	.	636	T	108425042	G	T	108425042	3	4	173	1	0	0	0	0	1	0	0	0	15539	1174	41	3	267	3	TAL2	9	108425042	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	1045206	108425042	32788389	59	21759											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139371483	139371483	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_014866	exon3	c.G585T	p.V195V	GGTGACCACACCG	.	52	24	54	0	.	.	A	139371483	C	A	139371483	2	1	173	1	0	0	0	0	0	0	0	1	13986	581	21	3		3	SEC16A	9	139371483	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	30946441	139371483	1841948	60	21760											
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	48390301	48390301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RBP3	NM_002900	exon1	c.A577G	p.I193V	GCAGGATGGTGTT	.	121	6	159	0	.	153	C	48390301	T	C	48390301	3	2	173	1	0	0	0	0	1	0	0	0	13157	1464	51	2	3182	2	RBP3	10	48390301	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		48390301	87144446	61	21761											
PARG	8505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51040916	51040916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PARG	NM_003631	exon16	c.G2580T	p.E860D	AAGATTCTCTGAA	.	150	44	199	0	.	948	A	51040916	C	A	51040916	3	1	173	1	0	0	0	0	1	0	0	0	11448	912	32	3	362	3	PARG	10	51040916	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	2650615	51040916	84493831	62	21762											
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71688713	71688713	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	COL13A1	NM_001130103	exon27	c.G1410T	p.G470G	TCCTGGGCAAATT	.	62	11	122	0	.	91	T	71688713	G	T	71688713	2	4	173	1	0	0	0	0	0	0	0	1	3670	1190	42	3		3	COL13A1	10	71688713	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	20647797	71688713	63846034	63	21763											
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	99400560	99400560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PI4K2A	NM_018425	exon1	c.C61T	p.P21S	ACCTTCCCGTCGG	.	44	18	35	0	.	226	T	99400560	C	T	99400560	3	4	173	1	0	0	0	0	1	0	0	0	11871	623	22	3	63	3	PI4K2A	10	99400560	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	27711847	99400560	36134187	64	21764											
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127753560	127753560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ADAM12	NM_021641	exon14	c.C1433T	p.A478V	GTTCCTGCAGGCT	.	31	16	33	0	.	716	A	127753560	G	A	127753560	3	1	173	1	0	0	0	0	1	0	0	0	236	1319	46	3	1444	3	ADAM12	10	127753560	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	28353000	127753560	7781187	65	21765											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608998	608998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PHRF1	NM_020901	exon14	c.G3539T	p.R1180L	GGTCCCGTGAGAA	.	25	11	35	0	.	22	T	608998	G	T	608998	3	4	173	1	0	0	0	0	1	0	0	0	11861	1145	40	1	3589	1	PHRF1	11	608998	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		608998	134397518	66	21766											
AMPD3	272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10527413	10527413	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	AMPD3	NM_000480	exon15	c.C2313T	p.I771I	AGAGATCACCGCC	.	36	15	45	0	.	291	T	10527413	C	T	10527413	2	4	173	1	0	0	0	0	0	0	0	1	587	816	29	3		3	AMPD3	11	10527413	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	9918415	10527413	124479103	67	21767											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46921486	46921486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LRP4	NM_002334	exon4	c.G358A	p.G120S	AGTAGCCATTCTG	.	46	13	52	0	.	94	T	46921486	C	T	46921486	3	4	173	1	0	0	0	0	1	0	0	0	8959	594	21	3	5499	3	LRP4	11	46921486	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	36394073	46921486	88085030	68	21768											
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587642	55587642	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR5D18	NM_001001952	exon1	c.C537T	p.F179F	CTTCTTCTGTGAG	.	93	28	115	0	.	71	T	55587642	C	T	55587642	2	4	173	1	0	0	0	0	0	0	0	1	11157	912	32	3		3	OR5D18	11	55587642	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	8666156	55587642	79418874	69	21769											
FADD	8772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049616	70049616	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FADD	NM_003824	exon1	c.C51T	p.S17S	GTCGAGCAGCGAG	.	101	34	122	0	.	660	T	70049616	C	T	70049616	2	4	173	1	0	0	0	0	0	0	0	1	5364	709	25	3		3	FADD	11	70049616	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	14461974	70049616	64956900	70	21770											
TSKU	25987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76506706	76506706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TSKU	NM_015516	exon2	c.A46G	p.T16A	GCCCAGACAACCC	.	29	10	36	0	.	90	G	76506706	A	G	76506706	3	3	173	1	0	0	0	0	1	0	0	0	16624	275	10	2	48	2	TSKU	11	76506706	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	6457090	76506706	58499810	71	21771											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117352790	117352790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DSCAML1	NM_020693	exon12	c.G2627A	p.R876Q	ATGGGCCGCTCAC	.	81	28	107	0	.	159	T	117352790	C	T	117352790	3	4	173	1	0	0	0	0	1	0	0	0	4769	652	23	1	3802	1	DSCAML1	11	117352790	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	40846084	117352790	17653726	72	21772											
ATP5L	10632	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118277703	118277703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ATP5L	NM_006476	exon2	c.A104C	p.K35T	ACGCCAAGGTTGA	.	20	5	43	0	.	90	C	118277703	A	C	118277703	3	2	173	1	0	0	0	0	1	0	0	0	1160	72	3	5	110	5	ATP5L	11	118277703	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	924913	118277703	16728813	73	21773											
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	118769207	118769207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	BCL9L	NM_182557	exon8	c.C4417A	p.P1473T	GAAGGGGGTGGGA	.	62	28	83	0	.	229	T	118769207	G	T	118769207	3	4	173	1	0	0	0	0	1	0	0	0	1382	1232	43	3	86	3	BCL9L	11	118769207	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	491504	118769207	16237309	74	21774											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6703766	6703778	+	Frame_Shift_Del	DEL	TCCACCTGTAGCA	TCCACCTGTAGCA	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	TCCACCTGTAGCA	TCCACCTGTAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHD4	NM_001273	exon15	c.2160_2172del	p.720_724del	CAGGGTTCCACCT	.	107	33	96	0	.	228	-	6703778	TCCACCTGTAGCA	-	6703766	7	5	173	1	0	1	0	1	0	0	0	0	3327	1770	62	0	3670	0	CHD4	12	6703766	Frame_Shift_Del	DEL	TCCACCTGTAGCA	TCGA-MI-A75C-01A-11D-A32G-10		6703766	127148129	75	21775											
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	19436367	19436367	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PLEKHA5	NM_001256470	exon12	c.A1467G	p.T489T	CAAGACATTAGGA	.	66	36	57	0	.	227	G	19436367	A	G	19436367	2	3	173	1	0	0	0	0	0	0	0	1	12059	204	8	2		2	PLEKHA5	12	19436367	Silent	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	12732601	19436367	114415528	76	21776											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	KRAS,NS,haematopoietic_neoplasm,0	KRAS	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	162	75	176	0	.	92875	T	25398284	C	T	25398284	3	4	173	1	0	0	0	0	1	0	0	0	8438	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	5961917	25398284	108453611	77	21777											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46123902	46123902	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARID2	NM_152641	exon2	c.168delT	p.T56fs	CACTACTTTAGGC	.	110	46	117	0	.	100	-	46123902	T	-	46123902	7	5	173	1	0	1	0	1	0	0	0	0	915	1596	56	0	174	0	ARID2	12	46123902	Frame_Shift_Del	DEL	T	TCGA-MI-A75C-01A-11D-A32G-10	20725618	46123902	87727993	78	21778											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46246499	46246499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARID2	NM_152641	exon15	c.4593delA	p.P1531fs	AATTCCAAATAAA	.	88	26	75	0	.	100	-	46246499	A	-	46246499	7	5	173	1	0	1	0	1	0	0	0	0	915	117	5	0	4651	0	ARID2	12	46246499	Frame_Shift_Del	DEL	A	TCGA-MI-A75C-01A-11D-A32G-10	122597	46246499	87605396	79	21779											
COPZ1	22818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54736037	54736037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	COPZ1	NM_001271736	exon3	c.G159T	p.E53D	CTTTGAGAAGAAC	.	89	31	113	0	.	90	T	54736037	G	T	54736037	3	4	173	1	0	0	0	0	1	0	0	0	3741	933	33	3	145	3	COPZ1	12	54736037	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	8489538	54736037	79115858	80	21780											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70953301	70953301	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PTPRB	NM_001109754	exon18	c.G4536A	p.E1512E	CTGCAGCTCAAAG	.	173	47	155	0	.	226	T	70953301	C	T	70953301	2	4	173	1	0	0	0	0	0	0	0	1	12796	796	28	3		3	PTPRB	12	70953301	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	16217264	70953301	62898594	81	21781											
ALX1	8092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85677457	85677457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ALX1	NM_006982	exon2	c.G334A	p.E112K	ATGCAAGAGAAGG	.	120	41	120	0	.	24	A	85677457	G	A	85677457	3	1	173	1	0	0	0	0	1	0	0	0	556	943	33	3	340	3	ALX1	12	85677457	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	14724156	85677457	48174438	82	21782											
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93205145	93205145	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EEA1	NM_003566	exon17	c.T2109C	p.H703H	ACTGCAATGTTCT	.	62	38	54	0	.	229	G	93205145	A	G	93205145	2	3	173	1	0	0	0	0	0	0	0	1	4921	98	4	2		2	EEA1	12	93205145	Silent	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	7527688	93205145	40646750	83	21783											
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33110720	33110720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	N4BP2L2	NM_014887	exon2	c.A445G	p.I149V	CATTTATACCATT	.	139	50	182	0	.	68	C	33110720	T	C	33110720	3	2	173	1	0	0	0	0	1	0	0	0	10112	1406	49	2	3187	2	N4BP2L2	13	33110720	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		33110720	82059158	84	21784											
CARS2	79587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111335421	111335421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CARS2	NM_024537	exon6	c.T632G	p.V211G	CCAGGGACCACGC	.	40	19	44	0	.	90	C	111335421	A	C	111335421	3	2	173	1	0	0	0	0	1	0	0	0	2658	275	10	5	1102	5	CARS2	13	111335421	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	78224701	111335421	3834457	85	21785											
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24808429	24808429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RIPK3	NM_006871	exon3	c.C263T	p.P88L	GGCTTGGGATCTT	.	57	26	50	0	.	946	A	24808429	G	A	24808429	3	1	173	1	0	0	0	0	1	0	0	0	13382	1232	43	3	1325	3	RIPK3	14	24808429	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		24808429	82541111	86	21786											
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55881125	55881125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TBPL2	NM_199047	exon7	c.C1100A	p.P367H	AGAATAGGATAGA	.	39	16	97	0	.	90	T	55881125	G	T	55881125	3	4	173	1	0	0	0	0	1	0	0	0	15643	1000	35	3	31	3	TBPL2	14	55881125	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	31072696	55881125	51468415	87	21787											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68274609	68274609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZFYVE26	NM_015346	exon5	c.C392T	p.A131V	CCTACTGCACCCT	.	62	27	89	0	.	162	A	68274609	G	A	68274609	3	1	173	1	0	0	0	0	1	0	0	0	17665	1319	46	3	7379	3	ZFYVE26	14	68274609	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	12393484	68274609	39074931	88	21788											
ESRRB	2103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76905705	76905705	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ESRRB	NM_004452	exon4	c.G9A	p.S3S	GTCCTCGGACGAC	.	67	29	96	0	.	188	A	76905705	G	A	76905705	2	1	173	1	0	0	0	0	0	0	0	1	5261	1103	39	1		1	ESRRB	14	76905705	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	8631096	76905705	30443835	89	21789											
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91779756	91779756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CCDC88C	NM_001080414	exon15	c.G2404C	p.D802H	CCAGGTCCCGCCG	.	26	10	23	0	.	25	G	91779756	C	G	91779756	3	3	173	1	0	0	0	0	1	0	0	0	2865	855	30	4	3746	4	CCDC88C	14	91779756	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	14874051	91779756	15569784	90	21790											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95574719	95574719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DICER1	NM_030621	exon16	c.A2378G	p.Y793C	GGAGGATAGAGCT	.	69	21	78	0	.	961	C	95574719	T	C	95574719	3	2	173	1	0	0	0	0	1	0	0	0	4521	1406	49	2	3442	2	DICER1	14	95574719	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	3794963	95574719	11774821	91	21791											
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707560	96707560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	BDKRB2	NM_000623	exon3	c.G895A	p.G299S	CGCCTCGGCATCC	.	52	20	43	0	.	662	A	96707560	G	A	96707560	3	1	173	1	0	0	0	0	1	0	0	0	1393	1116	39	1	901	1	BDKRB2	14	96707560	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	1132841	96707560	10641980	92	21792											
SNRPN	6638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25222974	25222974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SNRPN	NM_022807	exon11	c.C470A	p.A157E	TTGCTGCGACTGC	.	39	14	47	0	.	469	A	25222974	C	A	25222974	3	1	173	1	0	0	0	0	1	0	0	0	14870	768	27	1	488	1	SNRPN	15	25222974	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10		25222974	77308418	93	21793											
JMJD7-PLA2G4B	8681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42126967	42126967	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	JMJD7-PLA2G4B	NM_005090	exon2	c.C94T	p.L32L	CCCTACCTGGACA	.	59	21	84	1	.	135	T	42126967	C	T	42126967	2	4	173	1	0	0	0	0	0	0	0	1	7955	680	24	3		3	JMJD7-PLA2G4B	15	42126967	Silent	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	16903993	42126967	60404425	94	21794											
GLCE	26035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69560737	69560737	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GLCE	NM_015554	exon5	c.T1008C	p.D336D	AAGAGATATATAC	.	85	32	94	0	.	92	C	69560737	T	C	69560737	2	2	173	1	0	0	0	0	0	0	0	1	6432	1403	49	2		2	GLCE	15	69560737	Silent	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	27433770	69560737	32970655	95	21795											
NEO1	4756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73541427	73541427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	NEO1	NM_001172623	exon10	c.C1633T	p.L545F	CCTAACCTTCGTG	.	41	23	61	1	.	116	T	73541427	C	T	73541427	3	4	173	1	0	0	0	0	1	0	0	0	10336	681	24	3	1671	3	NEO1	15	73541427	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	3980690	73541427	28989965	96	21796											
CHRNA3	1136	hgsc.bcm.edu;broad.mit.edu	37	15	78894345	78894345	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHRNA3	NM_000743	exon5	c.A639T	p.P213P	GTAGCCTGGGGCT	.	94	4	111	0	.	515	A	78894345	T	A	78894345	2	1	173	1	0	0	0	0	0	0	0	1	3384	1567	55	4		4	CHRNA3	15	78894345	Silent	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	5352918	78894345	23637047	97	21797											
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90335706	90335706	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANPEP	NM_001150	exon17	c.G2337A	p.W779X	CTCCATCCACTGC	.	95	33	126	0	.	94	T	90335706	C	T	90335706	4	4	173	1	0	0	0	0	0	1	0	0	710	856	30	3	586	3	ANPEP	15	90335706	Nonsense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	11441361	90335706	12195686	98	21798	132	2									
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90335708	90335708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANPEP	NM_001150	exon17	c.T2335G	p.W779G	CCATCCACTGCTT	.	94	34	128	0	.	94	C	90335708	A	C	90335708	3	2	173	1	0	0	0	0	1	0	0	0	710	159	6	5	588	5	ANPEP	15	90335708	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	2	90335708	12195684	99	21799	132	2									
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2158624	2158624	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PKD1	NM_000296	exon15	c.C6544G	p.Q2182E	CAGTCTGGTAGGT	.	46	16	53	0	.	91	C	2158624	G	C	2158624	3	2	173	1	0	0	0	0	1	0	0	0	11963	1357	47	4	6495	4	PKD1	16	2158624	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		2158624	88196129	100	21800											
PKMYT1	9088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3024301	3024301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PKMYT1	NM_182687	exon6	c.G1097A	p.G366D	AGCACACCCCAGG	.	105	35	117	0	.	765	T	3024301	C	T	3024301	3	4	173	1	0	0	0	0	1	0	0	0	11978	507	18	3	456	3	PKMYT1	16	3024301	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	865677	3024301	87330452	101	21801											
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11859416	11859416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZC3H7A	NM_014153	exon14	c.A1648T	p.N550Y	TTCCATTGCCGCC	.	38	13	59	0	.	94	A	11859416	T	A	11859416	3	1	173	1	0	0	0	0	1	0	0	0	17569	1812	63	4	1307	4	ZC3H7A	16	11859416	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	8835115	11859416	78495337	102	21802											
TEKT1	83659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6718550	6718550	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TEKT1	NM_053285	exon5	c.C561A	p.I187I	GAAGCAGATATCA	.	122	6	158	0	.	92	T	6718550	G	T	6718550	2	4	173	1	0	0	0	0	0	0	0	1	15749	932	33	3		3	TEKT1	17	6718550	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		6718550	74476660	103	21803											
PIGL	9487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16216896	16216896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PIGL	NM_004278	exon4	c.C462A	p.H154Q	TGGCCACAGCAAT	.	74	29	99	0	.	226	A	16216896	C	A	16216896	3	1	173	1	0	0	0	0	1	0	0	0	11891	477	17	3	476	3	PIGL	17	16216896	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	9498346	16216896	64978314	104	21804											
KRT10	3858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38976377	38976377	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KRT10	NM_000421	exon5	c.G1079C	p.S360T	TTATAGCTGGATA	.	61	24	70	0	.	90	G	38976377	C	G	38976377	3	3	173	1	0	0	0	0	1	0	0	0	8448	797	28	4	691	4	KRT10	17	38976377	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	22759481	38976377	42218833	105	21805											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60742016	60742016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MRC2	NM_006039	exon2	c.C226A	p.R76S	GCCCAGCGCTGGA	.	51	14	45	0	.	117	A	60742016	C	A	60742016	3	1	173	1	0	0	0	0	1	0	0	0	9758	768	27	1	232	1	MRC2	17	60742016	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	21765639	60742016	20453194	106	21806											
GALK1	2584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73761055	73761055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GALK1	NM_000154	exon1	c.A163G	p.M55V	TCACCATAGGCAG	.	102	34	140	0	.	90	C	73761055	T	C	73761055	3	2	173	1	0	0	0	0	1	0	0	0	6203	1406	49	2	1047	2	GALK1	17	73761055	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	13019039	73761055	7434155	107	21807											
QRICH2	84074	broad.mit.edu;mdanderson.org	37	17	74271920	74271920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	QRICH2	NM_032134	exon18	c.T4964G	p.I1655S	GCCGAAATCTGGG	.	18	6	23	0	.	94	C	74271920	A	C	74271920	3	2	173	1	0	0	0	0	1	0	0	0	12880	101	4	5	35	5	QRICH2	17	74271920	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	510865	74271920	6923290	108	21808											
LGALS3BP	3959	ucsc.edu;bcgsc.ca	37	17	76973243	76973243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LGALS3BP	NM_005567	exon2	c.C31A	p.L11M	CCAGCAGCCACAC	.	28	4	53	0	.	515	T	76973243	G	T	76973243	3	4	173	1	0	0	0	0	1	0	0	0	8744	962	34	3	1746	3	LGALS3BP	17	76973243	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	2701323	76973243	4221967	109	21809											
HGS	9146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79661868	79661869	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	p.ED320DH	GGCTGAGGACATC	.	65	27	109	0	.	.	TC	79661869	GG	TC	79661868	3	4	173	1	0	0	0	0	1	0	0	0	7087	991	35	3	1006	3	HGS	17	79661868	Missense_Mutation	DNP	GG	TCGA-MI-A75C-01A-11D-A32G-10	2688625	79661868	1533342	110	21810											
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18586398	18586398	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ROCK1	NM_005406	exon16	c.A1799C	p.D600A	TCTTTGTCTGTTT	.	46	19	75	0	.	1026	G	18586398	T	G	18586398	3	3	173	1	0	0	0	0	1	0	0	0	13517	1667	58	5	2337	5	ROCK1	18	18586398	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		18586398	59490850	111	21811											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34174853	34174853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FHOD3	NM_025135	exon7	c.C710A	p.T237K	TTGACACGAAAAG	.	100	39	101	0	.	139	A	34174853	C	A	34174853	3	1	173	1	0	0	0	0	1	0	0	0	5883	536	19	1	736	1	FHOD3	18	34174853	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	15588455	34174853	43902395	112	21812											
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65179142	65179142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DSEL	NM_032160	exon2	c.G2734T	p.D912Y	AAGCATCTACAAA	.	73	23	94	0	.	157	A	65179142	C	A	65179142	3	1	173	1	0	0	0	0	1	0	0	0	4775	913	32	3	938	3	DSEL	18	65179142	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	31004289	65179142	12898106	113	21813											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9084547	9084547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MUC16	NM_024690	exon1	c.A7268C	p.N2423T	GCTGTATTTGTCT	.	93	6	183	0	.	566	G	9084547	T	G	9084547	3	3	173	1	0	0	0	0	1	0	0	0	9973	1493	52	5	36591	5	MUC16	19	9084547	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		9084547	50044436	114	21814											
RASAL3	64926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15569403	15569403	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_022904	exon7	c.C726A	p.A242A	CCGCTCGGCACCC	.	26	16	40	0	.	.	T	15569403	G	T	15569403	2	4	173	1	0	0	0	0	0	0	0	1	13065	1103	39	1		1	RASAL3	19	15569403	Silent	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	6484856	15569403	43559580	115	21815											
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35832797	35832797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CD22	NM_001185100	exon9	c.G1964C	p.G655A	ACTCGGGTGCCTA	.	66	25	84	0	.	526	C	35832797	G	C	35832797	3	2	173	1	0	0	0	0	1	0	0	0	2985	1261	44	4	1994	4	CD22	19	35832797	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10	20263394	35832797	23296186	116	21816											
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53612297	53612297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF415	NM_018355	exon4	c.G1001C	p.G334A	GCTTTGCCACACT	.	39	12	45	0	.	91	G	53612297	C	G	53612297	3	3	173	1	0	0	0	0	1	0	0	0	17889	739	26	4	670	4	ZNF415	19	53612297	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	17779500	53612297	5516686	117	21817											
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3541522	3541522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ATRN	NM_139321	exon8	c.T1417G	p.Y473D	TATGGATATATAA	.	132	51	189	0	.	154	G	3541522	T	G	3541522	3	3	173	1	0	0	0	0	1	0	0	0	1206	1406	49	5	1447	5	ATRN	20	3541522	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10		3541522	59483998	118	21818											
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu	37	20	32199083	32199084	+	In_Frame_Ins	INS	-	-	CAATGACAT	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CBFA2T2	NM_005093	exon4	c.389_390insCAATGACAT	p.G130delinsGNDI	AGTTTGGCAATGA	.	74	10	105	0	.	92	CAATGACAT	32199084	-	CAATGACAT	32199083	7	5	173	1	0	1	1	0	0	0	0	0	2697	1203	42	0	437	0	CBFA2T2	20	32199083	In_Frame_Ins	INS	-	TCGA-MI-A75C-01A-11D-A32G-10	28657561	32199083	30826437	119	21819											
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52198188	52198188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF217	NM_006526	exon1	c.A1178G	p.H393R	CTGGAGTGCAAGA	.	63	26	79	0	.	723	C	52198188	T	C	52198188	3	2	173	1	0	0	0	0	1	0	0	0	17769	1696	59	2	1984	2	ZNF217	20	52198188	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	19999105	52198188	10827332	120	21820											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	57766654	57766654	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF831	NM_178457	exon1	c.C580T	p.Q194X	CGGACGCAGACGC	.	26	9	49	0	.	126	T	57766654	C	T	57766654	4	4	173	1	0	0	0	0	0	1	0	0	18182	711	25	3	582	3	ZNF831	20	57766654	Nonsense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	5568466	57766654	5258866	121	21821											
ARFRP1	10139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62338416	62338416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARFRP1	NM_001134758	exon2	c.A28G	p.K10E	TGTACTTGTACAA	.	49	20	60	0	.	291	C	62338416	T	C	62338416	3	2	173	1	0	0	0	0	1	0	0	0	856	1821	63	2	609	2	ARFRP1	20	62338416	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	4571762	62338416	687104	122	21822											
SUSD2	56241	broad.mit.edu;bcgsc.ca	37	22	24583365	24583365	+	Missense_Mutation	SNP	G	G	T	rs141759016	byfrequency;alternate_allele	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SUSD2	NM_019601	exon11	c.G1838T	p.R613L	GCGGGCGCGTCCT	.	45	4	52	0	G|0.999;A|0.001	91	T	24583365	G	T	24583365	3	4	173	1	0	0	0	0	1	0	0	0	15405	1087	38	1	1880	1	SUSD2	22	24583365	Missense_Mutation	SNP	G	TCGA-MI-A75C-01A-11D-A32G-10		24583365	26721201	123	21823											
CPT1B	1375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51014481	51014481	+	Missense_Mutation	SNP	T	T	C	rs148070553		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CPT1B	NM_001145135	exon7	c.A760G	p.S254G	AGTTGCTGTTCAC	.	44	18	56	0	T|1.000;C|0.000	116	C	51014481	T	C	51014481	3	2	173	1	0	0	0	0	1	0	0	0	3832	1580	55	2	1610	2	CPT1B	22	51014481	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	26431116	51014481	290085	124	21824											
ACR	49	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51183204	51183204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ACR	NM_001097	exon5	c.T835C	p.W279R	GCCACCTGGCCCT	.	171	64	176	0	.	90	C	51183204	T	C	51183204	3	2	173	1	0	0	0	0	1	0	0	0	169	1580	55	2	853	2	ACR	22	51183204	Missense_Mutation	SNP	T	TCGA-MI-A75C-01A-11D-A32G-10	168723	51183204	121362	125	21825											
SHOX	6473	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	595367	595368	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SHOX	NM_000451	exon3	c.292_293del	p.98_98del	GAATGCAAAGAGA	.	74	22	122	0	.	40	-	595368	AA	-	595367	7	5	173	1	0	1	0	1	0	0	0	0	14288	131	5	0	298	0	SHOX	23	595367	Frame_Shift_Del	DEL	AA	TCGA-MI-A75C-01A-11D-A32G-10		595367	154675193	126	21826											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41002598	41002598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	USP9X	NM_001039591	exon10	c.C1216G	p.Q406E	CTTCATCAGCCAC	.	179	129	165	0	.	563	G	41002598	C	G	41002598	3	3	173	1	0	0	0	0	1	0	0	0	17087	827	29	4	1250	4	USP9X	23	41002598	Missense_Mutation	SNP	C	TCGA-MI-A75C-01A-11D-A32G-10	40407231	41002598	114267962	127	21827											
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	78427073	78427073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GPR174	NM_032553	exon1	c.A569G	p.E190G	TTGGCGAGTTGAT	.	72	6	84	0	.	130	G	78427073	A	G	78427073	3	3	173	1	0	0	0	0	1	0	0	0	6672	304	11	2	571	2	GPR174	23	78427073	Missense_Mutation	SNP	A	TCGA-MI-A75C-01A-11D-A32G-10	37424475	78427073	76843487	128	21828											
KIAA0319L	79932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35921730	35921730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	KIAA0319L	NM_024874	exon10	c.A1540G	p.T514A	GCAGGGTGATCAC	.	120	16	139	0	.	92	C	35921730	T	C	35921730	3	2	174	1	0	0	0	0	1	0	0	0	8169	1696	59	2	1657	2	KIAA0319L	1	35921730	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10		35921730	213328891	1	21829											
GBP7	388646	broad.mit.edu;mdanderson.org	37	1	89607248	89607248	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	GBP7	NM_207398	exon9	c.T1449A	p.A483A	CTCTCCAGCAGTG	.	55	6	52	0	.	92	T	89607248	A	T	89607248	2	4	174	1	0	0	0	0	0	0	0	1	6279	175	7	4		4	GBP7	1	89607248	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	53685518	89607248	159643373	2	21830											
EVI5	7813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	93159906	93159906	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	EVI5	NM_005665	exon8	c.1081delC	p.Q361fs	TCATCTGAAGAAG	.	184	38	216	0	.	136	-	93159906	G	-	93159906	7	5	174	1	0	1	0	1	0	0	0	0	5289	1299	45	0	1395	0	EVI5	1	93159906	Frame_Shift_Del	DEL	G	TCGA-MI-A75E-01A-11D-A32G-10	3552658	93159906	156090715	3	21831											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109340861	109340861	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	STXBP3	NM_007269	exon16	c.1449+2T>C	.	TGGAGGTAAAAAT	.	344	43	343	0	.	93	C	109340861	T	C	109340861	5	2	174	1	0	0	0	0	0	0	1	0	15353	1652	57	2	1513	2	STXBP3	1	109340861	Splice_Site	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	16180955	109340861	139909760	4	21832											
CCT3	7203	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	156287239	156287239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CCT3	NM_005998	exon9	c.C859T	p.P287S	CATCGGGCTTCAG	.	108	10	76	1	.	92	A	156287239	G	A	156287239	3	1	174	1	0	0	0	0	1	0	0	0	2954	1203	42	3	802	3	CCT3	1	156287239	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	46946378	156287239	92963382	5	21833											
MEF2D	4209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156450690	156450690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MEF2D	NM_005920	exon4	c.C332G	p.P111R	AGCAGGGGGCTCT	.	51	7	45	0	.	659	C	156450690	G	C	156450690	3	2	174	1	0	0	0	0	1	0	0	0	9458	1232	43	4	1269	4	MEF2D	1	156450690	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	163451	156450690	92799931	6	21834											
SLAMF8	56833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159802826	159802826	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLAMF8	NM_020125	exon3	c.A528G	p.P176P	GGAACCACACAGC	.	65	7	64	0	.	90	G	159802826	A	G	159802826	2	3	174	1	0	0	0	0	0	0	0	1	14370	146	6	2		2	SLAMF8	1	159802826	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	3352136	159802826	89447795	7	21835											
CACNA1E	777	broad.mit.edu;ucsc.edu	37	1	181741311	181741311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CACNA1E	NM_001205293	exon37	c.G5083A	p.G1695S	CGCTGCGGCACCG	.	111	17	81	1	.	95	A	181741311	G	A	181741311	3	1	174	1	0	0	0	0	1	0	0	0	2542	1116	39	1	5229	1	CACNA1E	1	181741311	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	21938485	181741311	67509310	8	21836											
TEDDM1	127670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182369506	182369506	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TEDDM1	NM_172000	exon1	c.C115G	p.L39V	TTAAGAGGGAGCC	.	121	15	102	0	.	92	C	182369506	G	C	182369506	3	2	174	1	0	0	0	0	1	0	0	0	15746	1000	35	4	710	4	TEDDM1	1	182369506	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	628195	182369506	66881115	9	21837											
PPP2R5A	5525	broad.mit.edu;bcgsc.ca	37	1	212519188	212519197	+	Frame_Shift_Del	DEL	TCCTGAAGAC	TCCTGAAGAC	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	TCCTGAAGAC	TCCTGAAGAC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PPP2R5A	NM_006243	exon5	c.617_626del	p.206_209del	GTGACTTCCTGAA	.	126	8	112	0	.	659	-	212519197	TCCTGAAGAC	-	212519188	7	5	174	1	0	1	0	1	0	0	0	0	12392	1783	62	0	635	0	PPP2R5A	1	212519188	Frame_Shift_Del	DEL	TCCTGAAGAC	TCGA-MI-A75E-01A-11D-A32G-10	30149682	212519188	36731433	10	21838											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223983762	223983762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TP53BP2	NM_001031685	exon13	c.A2479T	p.S827C	TGTCACTGTTCTC	.	96	14	60	0	.	229	A	223983762	T	A	223983762	3	1	174	1	0	0	0	0	1	0	0	0	16381	1580	55	4	949	4	TP53BP2	1	223983762	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	11464574	223983762	25266859	11	21839											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245849634	245849634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	KIF26B	NM_018012	exon12	c.G3349A	p.E1117K	TCTAGGGAGTCCT	.	74	8	58	0	.	25	A	245849634	G	A	245849634	3	1	174	1	0	0	0	0	1	0	0	0	8295	1175	41	3	3395	3	KIF26B	1	245849634	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	21865872	245849634	3400987	12	21840											
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248458182	248458182	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	OR2T12	NM_001004692	exon1	c.G699A	p.K233K	GGCCTTCTTGCGG	.	343	55	290	0	.	71	T	248458182	C	T	248458182	2	4	174	1	0	0	0	0	0	0	0	1	11019	912	32	3		3	OR2T12	1	248458182	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	2608548	248458182	792439	13	21841											
RSAD2	91543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	7027257	7027257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RSAD2	NM_080657	exon3	c.A700G	p.T234A	GACATGACGGAAC	.	86	13	81	0	.	90	G	7027257	A	G	7027257	3	3	174	1	0	0	0	0	1	0	0	0	13695	275	10	2	710	2	RSAD2	2	7027257	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10		7027257	236172116	14	21842											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80782957	80782957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CTNNA2	NM_001164883	exon12	c.C1680G	p.N560K	GGAGAACTATGAA	.	78	9	87	0	.	368	G	80782957	C	G	80782957	3	3	174	1	0	0	0	0	1	0	0	0	4013	564	20	4	1514	4	CTNNA2	2	80782957	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	73755700	80782957	162416416	15	21843											
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103120102	103120102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLC9A4	NM_001011552	exon3	c.G916A	p.V306I	CTCATCGTCTTCA	.	113	18	113	0	.	92	A	103120102	G	A	103120102	3	1	174	1	0	0	0	0	1	0	0	0	14716	1145	40	1	926	1	SLC9A4	2	103120102	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	22337145	103120102	140079271	16	21844											
FHL2	2274	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	105977827	105977827	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FHL2	NM_001039492	exon7	c.T753C	p.C251C	CTTCTTACAGTTA	.	111	14	101	1	.	91	G	105977827	A	G	105977827	2	3	174	1	0	0	0	0	0	0	0	1	5879	389	14	2		2	FHL2	2	105977827	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	2857725	105977827	137221546	17	21845											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168107754	168107754	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	XIRP2	NM_152381	exon9	c.G9852T	p.V3284V	CATGGTGCCCGAC	.	81	22	108	0	.	104	T	168107754	G	T	168107754	2	4	174	1	0	0	0	0	0	0	0	1	17427	1306	46	3		3	XIRP2	2	168107754	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	62129927	168107754	75091619	18	21846											
CERKL	375298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	182412568	182412568	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CERKL	NM_001030311	exon10	c.A1218G	p.A406A	TCCCTGTGCCCTC	.	116	12	106	0	.	228	C	182412568	T	C	182412568	2	2	174	1	0	0	0	0	0	0	0	1	3268	1683	59	2		2	CERKL	2	182412568	Silent	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	14304814	182412568	60786805	19	21847											
BMPR2	659	hgsc.bcm.edu;broad.mit.edu	37	2	203417602	203417602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	BMPR2	NM_001204	exon11	c.A1577G	p.Q526R	CTATGCAGAATGA	.	59	4	47	0	.	1003	G	203417602	A	G	203417602	3	3	174	1	0	0	0	0	1	0	0	0	1471	188	7	2	1619	2	BMPR2	2	203417602	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	21005034	203417602	39781771	20	21848											
BMPR2	659	broad.mit.edu;ucsc.edu	37	2	203421181	203421181	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	BMPR2	NM_001204	exon12	c.G2793A	p.K931K	ATCAAAGCCCAGA	.	39	4	41	0	.	1003	A	203421181	G	A	203421181	2	1	174	1	0	0	0	0	0	0	0	1	1471	962	34	3		3	BMPR2	2	203421181	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	3579	203421181	39778192	21	21849											
ALPP	250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233246210	233246210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ALPP	NM_001632	exon11	c.G1313A	p.S438N	CAGGGAGCCCCGA	.	211	41	195	0	.	91	A	233246210	G	A	233246210	3	1	174	1	0	0	0	0	1	0	0	0	548	971	34	3	1355	3	ALPP	2	233246210	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	29825029	233246210	9953163	22	21850											
ZNF385D	79750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	21462713	21462713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF385D	NM_024697	exon8	c.C1181T	p.P394L	TAGTAAGGAGCAA	.	54	6	41	0	.	156	A	21462713	G	A	21462713	3	1	174	1	0	0	0	0	1	0	0	0	17875	1000	35	3	10	3	ZNF385D	3	21462713	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		21462713	176559717	23	21851											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48696462	48696462	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CELSR3	NM_001407	exon1	c.C3606T	p.V1202V	GTCGGAGACATCG	.	69	12	71	0	.	523	A	48696462	G	A	48696462	2	1	174	1	0	0	0	0	0	0	0	1	3223	929	33	3		3	CELSR3	3	48696462	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	27233749	48696462	149325968	24	21852											
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58089691	58089691	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FLNB	NM_001457	exon10	c.C1489T	p.L497L	GAGGGTCTGGAGG	.	70	13	96	0	.	593	T	58089691	C	T	58089691	2	4	174	1	0	0	0	0	0	0	0	1	5934	912	32	3		3	FLNB	3	58089691	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	9393229	58089691	139932739	25	21853											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64133075	64133075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRICKLE2	NM_198859	exon7	c.G1091T	p.R364L	GACAGCCGGTTAG	.	65	11	61	0	.	95	A	64133075	C	A	64133075	3	1	174	1	0	0	0	0	1	0	0	0	12487	652	23	1	1451	1	PRICKLE2	3	64133075	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	6043384	64133075	133889355	26	21854											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64633684	64633684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ADAMTS9	NM_182920	exon11	c.G1642C	p.G548R	GTACTCCATTGAC	.	35	7	22	0	.	230	G	64633684	C	G	64633684	3	3	174	1	0	0	0	0	1	0	0	0	273	603	21	4	4281	4	ADAMTS9	3	64633684	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	500609	64633684	133388746	27	21855											
FRMD4B	23150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69246073	69246073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FRMD4B	NM_015123	exon13	c.A1070G	p.Y357C	TCCAAGTAAAACT	.	53	8	70	0	.	72	C	69246073	T	C	69246073	3	2	174	1	0	0	0	0	1	0	0	0	6052	1638	57	2	2078	2	FRMD4B	3	69246073	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	4612389	69246073	128776357	28	21856											
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	159710887	159710887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	IL12A	NM_000882	exon3	c.C353T	p.A118V	TGGAGGCCTGTTT	.	89	17	85	0	.	90	T	159710887	C	T	159710887	3	4	174	1	0	0	0	0	1	0	0	0	7624	739	26	3	363	3	IL12A	3	159710887	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	90464814	159710887	38311543	29	21857											
TBL1XR1	79718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	176755936	176755936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TBL1XR1	NM_024665	exon12	c.G1072T	p.D358Y	TTGGGTCCCATTT	.	251	42	201	0	.	187	A	176755936	C	A	176755936	3	1	174	1	0	0	0	0	1	0	0	0	15637	855	30	3	492	3	TBL1XR1	3	176755936	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	17045049	176755936	21266494	30	21858											
LSG1	55341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194371616	194371616	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LSG1	NM_018385	exon10	c.A1413G	p.V471V	TAGTGATACAGGA	.	75	9	41	0	.	90	C	194371616	T	C	194371616	2	2	174	1	0	0	0	0	0	0	0	1	9049	1393	49	2		2	LSG1	3	194371616	Silent	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	17615680	194371616	3650814	31	21859											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1803246	1803246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FGFR3	NM_001163213	exon5	c.C598T	p.R200C	GAGCACCGCATTG	.	46	10	50	0	.	9542	T	1803246	C	T	1803246	3	4	174	1	0	0	0	0	1	0	0	0	5867	652	23	1	612	1	FGFR3	4	1803246	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10		1803246	189351030	32	21860											
HGFAC	3083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3449280	3449280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	HGFAC	NM_001528	exon11	c.G1417A	p.V473M	ACGGACGTGACGC	.	267	43	245	0	.	514	A	3449280	G	A	3449280	3	1	174	1	0	0	0	0	1	0	0	0	7086	1145	40	1	1459	1	HGFAC	4	3449280	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	1646034	3449280	187704996	33	21861											
ALB	213	broad.mit.edu;bcgsc.ca	37	4	74283240	74283251	+	Frame_Shift_Del	DEL	TTTTTCAGGCTA	TTTTTCAGGCTA	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	TTTTTCAGGCTA	TTTTTCAGGCTA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ALB	NM_000477	exon11	c.1290_1293del	p.430_431del	CTTCTTTTTTTCA	.	142	9	140	0	.	96	-	74283251	TTTTTCAGGCTA	-	74283240	7	5	174	1	0	1	0	1	0	0	0	0	486	1856	64	0		0	ALB	4	74283240	Frame_Shift_Del	DEL	TTTTTCAGGCTA	TCGA-MI-A75E-01A-11D-A32G-10	70833960	74283240	116871036	34	21862											
ENOPH1	58478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83372214	83372214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ENOPH1	NM_021204	exon3	c.C205A	p.L69M	GCCCACCTGGATG	.	83	17	71	0	.	22	A	83372214	C	A	83372214	3	1	174	1	0	0	0	0	1	0	0	0	5124	680	24	3	215	3	ENOPH1	4	83372214	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	9088974	83372214	107782062	35	21863											
LARP1B	55132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128999091	128999091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LARP1B	NM_032239	exon4	c.C191G	p.A64G	ATGAGGCTCAGTC	.	289	48	302	0	.	68	G	128999091	C	G	128999091	3	3	174	1	0	0	0	0	1	0	0	0	8629	797	28	4	197	4	LARP1B	4	128999091	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	45626877	128999091	62155185	36	21864											
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186998195	186998195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TLR3	NM_003265	exon2	c.A422G	p.N141S	AAAATAATCCCTT	.	137	24	101	0	.	524	G	186998195	A	G	186998195	3	3	174	1	0	0	0	0	1	0	0	0	15949	101	4	2	424	2	TLR3	4	186998195	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	57999104	186998195	4156081	37	21865											
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1216776	1216776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLC6A19	NM_001003841	exon7	c.C991A	p.Q331K	GCCACACAGCGCT	.	62	9	58	0	.	90	A	1216776	C	A	1216776	3	1	174	1	0	0	0	0	1	0	0	0	14682	479	17	3	1017	3	SLC6A19	5	1216776	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10		1216776	179698484	38	21866											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32074465	32074465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PDZD2	NM_178140	exon17	c.C3253T	p.P1085S	AGCGCACCCAAAT	.	59	10	67	0	.	563	T	32074465	C	T	32074465	3	4	174	1	0	0	0	0	1	0	0	0	11701	507	18	3	3319	3	PDZD2	5	32074465	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	30857689	32074465	148840795	39	21867											
RASGRF2	5924	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80376525	80376525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RASGRF2	NM_006909	exon7	c.G1078A	p.D360N	GATTTTGACAAAC	.	116	16	111	1	.	725	A	80376525	G	A	80376525	3	1	174	1	0	0	0	0	1	0	0	0	13073	1290	45	3	1104	3	RASGRF2	5	80376525	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	48302060	80376525	100538735	40	21868											
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82649043	82649043	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	XRCC4	NM_022406	exon8	c.C993T	p.D331D	AGAAGACCTCTTT	.	261	56	238	0	.	229	T	82649043	C	T	82649043	2	4	174	1	0	0	0	0	0	0	0	1	17452	506	18	3		3	XRCC4	5	82649043	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	2272518	82649043	98266217	41	21869											
PJA2	9867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	108714881	108714881	+	Missense_Mutation	SNP	G	G	T	rs143063686	alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PJA2	NM_014819	exon4	c.C307A	p.P103T	AAGTGGGAATTTC	.	77	9	90	0	G|1.000;A|0.000	92	T	108714881	G	T	108714881	3	4	174	1	0	0	0	0	1	0	0	0	11962	1174	41	3	1847	3	PJA2	5	108714881	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	26065838	108714881	72200379	42	21870											
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112179045	112179045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	APC	NM_001127510	exon17	c.A7754T	p.K2585I	AAGCAAAAAGTGA	.	53	7	61	0	.	12026	T	112179045	A	T	112179045	3	4	174	1	0	0	0	0	1	0	0	0	763	14	1	4	7812	4	APC	5	112179045	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	3464164	112179045	68736215	43	21871											
CEP120	153241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	122725745	122725748	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	AGTA	AGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CEP120	NM_153223	exon9	c.1125_1128del	p.375_376del	TGGCCCAGTAAGT	.	155	26	142	0	.	91	-	122725748	AGTA	-	122725745	7	5	174	1	0	1	0	1	0	0	0	0	3246	175	7	0	1884	0	CEP120	5	122725745	Frame_Shift_Del	DEL	AGTA	TCGA-MI-A75E-01A-11D-A32G-10	10546700	122725745	58189515	44	21872											
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130778169	130778169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RAPGEF6	NM_001164387	exon25	c.G3522T	p.M1174I	TGACCTCATAGGC	.	131	25	128	0	.	661	A	130778169	C	A	130778169	3	1	174	1	0	0	0	0	1	0	0	0	13048	826	29	3	1781	3	RAPGEF6	5	130778169	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	8052424	130778169	50137091	45	21873											
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147481371	147481371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SPINK5	NM_001127699	exon15	c.A1330T	p.R444W	AAATCCAGGAAAA	.	92	9	93	0	.	138	T	147481371	A	T	147481371	3	4	174	1	0	0	0	0	1	0	0	0	15061	179	7	4	1388	4	SPINK5	5	147481371	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	16703202	147481371	33433889	46	21874											
TIMD4	91937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156375492	156375492	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TIMD4	NM_138379	exon5	c.T779A	p.L260H	GATGGGAGATCCC	.	80	12	74	0	.	92	T	156375492	A	T	156375492	3	4	174	1	0	0	0	0	1	0	0	0	15900	304	11	4	377	4	TIMD4	5	156375492	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	8894121	156375492	24539768	47	21875											
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26056228	26056229	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	.	.	.	p.G143V	TGCGCCGCCAGCC	.	95	18	93	0	.	.	AA	26056229	GC	AA	26056228	3	1	174	1	0	0	0	0	1	0	0	0	7124	1074	38	1	216	1	HIST1H1C	6	26056228	Missense_Mutation	DNP	GC	TCGA-MI-A75E-01A-11D-A32G-10		26056228	145058839	48	21876											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38775436	38775436	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	DNAH8	NM_001206927	exon24	c.T3201A	p.L1067L	CAGTCTTCAAAAA	.	122	28	101	0	.	615	A	38775436	T	A	38775436	2	1	174	1	0	0	0	0	0	0	0	1	4607	1770	62	4		4	DNAH8	6	38775436	Silent	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	12719208	38775436	132339631	49	21877											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57393173	57393173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRIM2	.	.	.	.	TTAGATCAGATTG	.	92	6	117	0	.	227	G	57393173	C	G	57393173	3	3	174	1	0	0	0	0	1	0	0	0	12491	827	29	4	853	4	PRIM2	6	57393173	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	18617737	57393173	113721894	50	21878											
ATG5	9474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106634468	106634468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ATG5	NM_004849	exon8	c.A775C	p.S259R	GGTAGCTCAGATG	.	40	12	44	0	.	153	G	106634468	T	G	106634468	3	3	174	1	0	0	0	0	1	0	0	0	1100	1551	54	5	56	5	ATG5	6	106634468	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	49241295	106634468	64480599	51	21879	133	2									
ATG5	9474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106634473	106634473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ATG5	NM_004849	exon8	c.A770G	p.H257R	CTCAGATGTTCAC	.	40	12	44	0	.	153	C	106634473	T	C	106634473	3	2	174	1	0	0	0	0	1	0	0	0	1100	1464	51	2	61	2	ATG5	6	106634473	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	5	106634473	64480594	52	21880	133	2									
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111670435	111670435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	REV3L	NM_002912	exon20	c.A7405G	p.I2469V	TCATGATTCTCCA	.	88	16	111	0	.	294	C	111670435	T	C	111670435	3	2	174	1	0	0	0	0	1	0	0	0	13240	1493	52	2	2039	2	REV3L	6	111670435	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	5035962	111670435	59444632	53	21881											
ZC3H12D	340152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	149777857	149777857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_207360	exon4	c.G625T	p.E209X	TCCACTCGGGGTT	.	35	7	50	0	.	.	A	149777857	C	A	149777857	4	1	174	1	0	0	0	0	0	1	0	0	17561	893	31	1	970	1	ZC3H12D	6	149777857	Nonsense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	38107422	149777857	21337210	54	21882											
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	170116083	170116083	+	Nonsense_Mutation	SNP	G	G	A	rs140258100	alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PHF10	NM_018288	exon5	c.C511T	p.Q171X	TTCGTTGACGTTC	.	175	30	238	0	G|1.000;C|0.000	226	A	170116083	G	A	170116083	4	1	174	1	0	0	0	0	0	1	0	0	11821	1299	45	3	1017	3	PHF10	6	170116083	Nonsense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	20338226	170116083	998984	55	21883											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3998620	3998620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SDK1	NM_152744	exon8	c.C1208T	p.T403I	AAGAAACTGTGGA	.	58	9	56	0	.	138	T	3998620	C	T	3998620	3	4	174	1	0	0	0	0	1	0	0	0	13968	565	20	3	1238	3	SDK1	7	3998620	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10		3998620	155140043	56	21884											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	20685483	20685483	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABCB5	NM_001163941	exon8	c.C783A	p.A261A	TAGGGCCCAGGAG	.	122	19	111	0	.	158	A	20685483	C	A	20685483	2	1	174	1	0	0	0	0	0	0	0	1	44	610	22	3		3	ABCB5	7	20685483	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	16686863	20685483	138453180	57	21885	134	2									
ABCB5	340273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	20685484	20685484	+	Missense_Mutation	SNP	C	C	G	rs2074000	byfrequency;alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABCB5	NM_001163941	exon8	c.C784G	p.Q262E	AGGGCCCAGGAGA	.	124	19	112	0	C|0.847;A|0.153	158	G	20685484	C	G	20685484	3	3	174	1	0	0	0	0	1	0	0	0	44	595	21	4	810	4	ABCB5	7	20685484	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	1	20685484	138453179	58	21886	134	2									
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	42005488	42005488	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	GLI3	NM_000168	exon15	c.C3183T	p.H1061H	GGACGAGTGGAAG	.	74	9	65	0	.	1149	A	42005488	G	A	42005488	2	1	174	1	0	0	0	0	0	0	0	1	6439	1020	36	3		3	GLI3	7	42005488	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	21320004	42005488	117133175	59	21887											
ZNF92	168374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64863556	64863556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF92	NM_152626	exon4	c.A529G	p.N177D	TGTAAAAACCGTG	.	53	12	50	0	.	514	G	64863556	A	G	64863556	3	3	174	1	0	0	0	0	1	0	0	0	18198	14	1	2	543	2	ZNF92	7	64863556	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	22858068	64863556	94275107	60	21888											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100683668	100683668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MUC17	NM_001040105	exon3	c.A8971T	p.S2991C	TTAACAAGTATGT	.	66	11	58	0	.	95	T	100683668	A	T	100683668	3	4	174	1	0	0	0	0	1	0	0	0	9974	72	3	4	8981	4	MUC17	7	100683668	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	35820112	100683668	58454995	61	21889											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100695190	100695191	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MUC17	NM_001040105	exon9	c.13050_13051insA	p.S4350fs	TGTCTCCAAGAAC	.	114	15	93	0	.	95	A	100695191	-	A	100695190	7	5	174	1	0	1	1	0	0	0	0	0	9974	581	21	0	13084	0	MUC17	7	100695190	Frame_Shift_Ins	INS	-	TCGA-MI-A75E-01A-11D-A32G-10	11522	100695190	58443473	62	21890											
LAMB1	3912	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	107616134	107616134	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LAMB1	NM_002291	exon10	c.C1189T	p.R397X	ACATACGTTCACA	.	66	12	70	1	.	97	A	107616134	G	A	107616134	4	1	174	1	0	0	0	0	0	1	0	0	8610	1159	40	1	4271	1	LAMB1	7	107616134	Nonsense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	6920944	107616134	51522529	63	21891											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117385885	117385885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CTTNBP2	NM_033427	exon14	c.G3535T	p.A1179S	TCTTACCGCTACT	.	66	7	71	0	.	94	A	117385885	C	A	117385885	3	1	174	1	0	0	0	0	1	0	0	0	4045	666	23	1	1496	1	CTTNBP2	7	117385885	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	9769751	117385885	41752778	64	21892											
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127255566	127255566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PAX4	NM_006193	exon1	c.G9T	p.Q3H	CCCAAGCTGGTTC	.	56	14	60	0	.	227	A	127255566	C	A	127255566	3	1	174	1	0	0	0	0	1	0	0	0	11481	796	28	3	1058	3	PAX4	7	127255566	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	9869681	127255566	31883097	65	21893											
ATP6V1F	9296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128505594	128505594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ATP6V1F	NM_001198909	exon3	c.A406T	p.R136W	CTGCGCAGGGCCA	.	66	9	55	0	.	91	T	128505594	A	T	128505594	3	4	174	1	0	0	0	0	1	0	0	0	1185	179	7	4	328	4	ATP6V1F	7	128505594	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	1250028	128505594	30633069	66	21894											
SSPO	23145	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149521651	149521651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_198455	exon95	c.A13730T	p.H4577L	ACCGCCACCGGCT	.	28	5	31	0	.	.	T	149521651	A	T	149521651	3	4	174	1	0	0	0	0	1	0	0	0	15188	159	6	4	14102	4	SSPO	7	149521651	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	21016057	149521651	9617012	67	21895											
ABP1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150555959	150555959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABP1	NM_001091	exon3	c.C1679T	p.S560F	AGTACTCCTGGGA	.	155	21	154	0	.	139	T	150555959	C	T	150555959	3	4	174	1	0	0	0	0	1	0	0	0	98	855	30	3	1685	3	ABP1	7	150555959	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	1034308	150555959	8582704	68	21896											
DNAJB6	10049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157208729	157208729	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	DNAJB6	NM_058246	exon10	c.G918A	p.K306K	TGGCAAGAGGAAG	.	52	7	36	0	.	93	A	157208729	G	A	157208729	2	1	174	1	0	0	0	0	0	0	0	1	4624	933	33	3		3	DNAJB6	7	157208729	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	6652770	157208729	1929934	69	21897											
CHRNA2	1135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27321444	27321444	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CHRNA2	NM_000742	exon6	c.C516T	p.H172H	CACCCAGTGCACA	.	73	10	75	0	.	91	A	27321444	G	A	27321444	2	1	174	1	0	0	0	0	0	0	0	1	3383	1020	36	3		3	CHRNA2	8	27321444	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		27321444	119042578	70	21898											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48701735	48701735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRKDC	.	.	.	.	GATTAGAGAGCTG	.	290	39	293	0	.	1515	G	48701735	A	G	48701735	3	3	174	1	0	0	0	0	1	0	0	0	12521	304	11	2	1699	2	PRKDC	8	48701735	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	21380291	48701735	97662287	71	21899											
NSMAF	8439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59536325	59536325	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NSMAF	NM_001144772	exon7	c.T492C	p.Y164Y	AAAAACATATTCC	.	198	55	188	0	.	91	G	59536325	A	G	59536325	2	3	174	1	0	0	0	0	0	0	0	1	10674	224	8	2		2	NSMAF	8	59536325	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	10834590	59536325	86827697	72	21900											
ZNF510	22869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99522338	99522338	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF510	NM_014930	exon6	c.A774G	p.K258K	TCCAATTTTATTA	.	70	15	76	0	.	90	C	99522338	T	C	99522338	2	2	174	1	0	0	0	0	0	0	0	1	17951	1838	64	2		2	ZNF510	9	99522338	Silent	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10		99522338	41691093	73	21901											
FAM129B	64855	broad.mit.edu;ucsc.edu	37	9	130271257	130271257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FAM129B	NM_022833	exon10	c.G1315A	p.E439K	CTACCTCCCGCAT	.	39	4	41	0	.	68	T	130271257	C	T	130271257	3	4	174	1	0	0	0	0	1	0	0	0	5437	864	30	3	945	3	FAM129B	9	130271257	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	30748919	130271257	10942174	74	21902											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26457744	26457744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MYO3A	NM_017433	exon28	c.C3215T	p.S1072L	TGTGTTCAAGAAG	.	85	14	83	0	.	1007	T	26457744	C	T	26457744	3	4	174	1	0	0	0	0	1	0	0	0	10076	838	29	3	3317	3	MYO3A	10	26457744	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10		26457744	109077003	75	21903											
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27821473	27821473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RAB18	NM_001256410	exon5	c.C311T	p.P104L	TAACTCCCAGCTA	.	51	9	32	0	.	227	T	27821473	C	T	27821473	3	4	174	1	0	0	0	0	1	0	0	0	12903	623	22	3	238	3	RAB18	10	27821473	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	1363729	27821473	107713274	76	21904											
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48381913	48381913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RBP3	NM_002900	exon4	c.C3736T	p.H1246Y	ACAGGTGGTCCTG	.	34	6	58	0	.	153	A	48381913	G	A	48381913	3	1	174	1	0	0	0	0	1	0	0	0	13157	1348	47	3	11	3	RBP3	10	48381913	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	20560440	48381913	87152834	77	21905											
ADAMTS14	140766	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72520494	72520494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ADAMTS14	NM_139155	exon22	c.G3566T	p.G1189V	CCGGGGGGCTGCC	.	47	7	52	1	.	232	T	72520494	G	T	72520494	3	4	174	1	0	0	0	0	1	0	0	0	259	1232	43	3	3652	3	ADAMTS14	10	72520494	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	24138581	72520494	63014253	78	21906											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73562794	73562794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CDH23	NM_022124	exon52	c.A7622G	p.N2541S	GTCCCAATGGAGA	.	68	11	53	0	.	563	G	73562794	A	G	73562794	3	3	174	1	0	0	0	0	1	0	0	0	3108	101	4	2	8177	2	CDH23	10	73562794	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	1042300	73562794	61971953	79	21907											
ANXA7	310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75147452	75147452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ANXA7	NM_004034	exon8	c.G694A	p.G232S	CCTTGCCATAGGA	.	109	19	103	0	.	516	T	75147452	C	T	75147452	3	4	174	1	0	0	0	0	1	0	0	0	723	594	21	3	800	3	ANXA7	10	75147452	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	1584658	75147452	60387295	80	21908											
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2429133	2429133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TRPM5	NM_014555	exon19	c.T2792A	p.V931E	CAGTTCACACGGG	.	117	16	97	0	.	137	T	2429133	A	T	2429133	3	4	174	1	0	0	0	0	1	0	0	0	16586	159	6	4	729	4	TRPM5	11	2429133	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10		2429133	132577383	81	21909											
GRM5	2915	hgsc.bcm.edu;broad.mit.edu	37	11	88241917	88241917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	GRM5	NM_001143831	exon9	c.T3482A	p.V1161E	AGAGCCACCAGCT	.	60	7	34	0	.	949	T	88241917	A	T	88241917	3	4	174	1	0	0	0	0	1	0	0	0	6800	159	6	4	160	4	GRM5	11	88241917	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	85812784	88241917	46764599	82	21910											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92495075	92495075	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FAT3	NM_001008781	exon4	c.G3723T	p.V1241V	GGTGGTGGTTCAG	.	77	12	64	0	.	73	T	92495075	G	T	92495075	2	4	174	1	0	0	0	0	0	0	0	1	5691	1335	47	3		3	FAT3	11	92495075	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	4253158	92495075	42511441	83	21911											
CEP57	9702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	95546100	95546100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CEP57	NM_001243777	exon3	c.A207G	p.I69M	AGCCATATTTTCT	.	124	17	111	0	.	91	G	95546100	A	G	95546100	3	3	174	1	0	0	0	0	1	0	0	0	3256	439	16	2	217	2	CEP57	11	95546100	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	3051025	95546100	39460416	84	21912											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117869720	117869720	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	IL10RA	NM_001558	exon7	c.C1101T	p.S367S	CAATAGCACAGAC	.	38	9	54	0	.	91	T	117869720	C	T	117869720	2	4	174	1	0	0	0	0	0	0	0	1	7620	709	25	3		3	IL10RA	11	117869720	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	22323620	117869720	17136796	85	21913											
PANX3	116337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124489603	124489603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PANX3	NM_052959	exon4	c.G951C	p.K317N	CAGAAAGATGCTA	.	124	22	125	0	.	68	C	124489603	G	C	124489603	3	2	174	1	0	0	0	0	1	0	0	0	11422	933	33	4	965	4	PANX3	11	124489603	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	6619883	124489603	10516913	86	21914											
JAM3	83700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134014256	134014256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	JAM3	NM_032801	exon4	c.T377C	p.I126T	AGGAAATTGATGA	.	64	7	65	0	.	91	C	134014256	T	C	134014256	3	2	174	1	0	0	0	0	1	0	0	0	7944	1493	52	2	526	2	JAM3	11	134014256	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	9524653	134014256	992260	87	21915											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2794935	2794935	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CACNA1C	NM_199460	exon47	c.G5856A	p.L1952L	GCAACTGACGCTC	.	125	22	129	0	.	34	A	2794935	G	A	2794935	2	1	174	1	0	0	0	0	0	0	0	1	2540	1277	45	3		3	CACNA1C	12	2794935	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		2794935	131056960	88	21916											
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21995268	21995268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABCC9	NM_005691	exon27	c.A3453C	p.K1151N	AAAGTATTTCTGG	.	54	13	49	0	.	96	G	21995268	T	G	21995268	3	3	174	1	0	0	0	0	1	0	0	0	59	1490	52	5	1386	5	ABCC9	12	21995268	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	19200333	21995268	111856627	89	21917											
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	33592330	33592330	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SYT10	NM_198992	exon1	c.128delG	p.G43fs	TGGCTGCCCCTGT	.	53	13	52	0	.	92	-	33592330	C	-	33592330	7	5	174	1	0	1	0	1	0	0	0	0	15463	739	26	0	1471	0	SYT10	12	33592330	Frame_Shift_Del	DEL	C	TCGA-MI-A75E-01A-11D-A32G-10	11597062	33592330	100259565	90	21918											
STAT2	6773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56742763	56742763	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	STAT2	NM_005419	exon17	c.T1521C	p.Y507Y	GCCAACATAGGAG	.	43	6	27	0	.	847	G	56742763	A	G	56742763	2	3	174	1	0	0	0	0	0	0	0	1	15264	224	8	2		2	STAT2	12	56742763	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	23150433	56742763	77109132	91	21919											
MDM1	56890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68719226	68719226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MDM1	NM_017440	exon4	c.A628G	p.N210D	CCTGATTGGCTGC	.	130	16	122	0	.	95	C	68719226	T	C	68719226	3	2	174	1	0	0	0	0	1	0	0	0	9412	1812	63	2	1560	2	MDM1	12	68719226	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	11976463	68719226	65132669	92	21920											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23911712	23911712	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SACS	NM_014363	exon10	c.C6303A	p.S2101S	CTCCAAGGAACAA	.	62	12	57	0	.	298	T	23911712	G	T	23911712	2	4	174	1	0	0	0	0	0	0	0	1	13804	987	35	3		3	SACS	13	23911712	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		23911712	91258166	93	21921											
PABPC3	5042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25671982	25671982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PABPC3	NM_030979	exon1	c.C1646A	p.P549H	CTGCCCCTCCTCA	.	72	17	73	0	.	72	A	25671982	C	A	25671982	3	1	174	1	0	0	0	0	1	0	0	0	11365	681	24	3	1648	3	PABPC3	13	25671982	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	1760270	25671982	89497896	94	21922											
CCDC122	160857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	44433943	44433943	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CCDC122	NM_144974	exon5	c.G420A	p.G140G	TACTTCCCCCAAA	.	165	22	146	1	.	90	T	44433943	C	T	44433943	2	4	174	1	0	0	0	0	0	0	0	1	2758	610	22	3		3	CCDC122	13	44433943	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	18761961	44433943	70735935	95	21923											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	77750664	77750664	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MYCBP2	NM_015057	exon36	c.G5440T	p.E1814X	TGATCTCAGCTAT	.	93	15	93	0	.	236	A	77750664	C	A	77750664	4	1	174	1	0	0	0	0	0	1	0	0	10018	835	29	3	8788	3	MYCBP2	13	77750664	Nonsense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	33316721	77750664	37419214	96	21924											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24878595	24878595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NYNRIN	NM_025081	exon4	c.A1595G	p.Q532R	CAGATCAGTCAGT	.	54	6	52	0	.	3	G	24878595	A	G	24878595	3	3	174	1	0	0	0	0	1	0	0	0	10796	188	7	2	1605	2	NYNRIN	14	24878595	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10		24878595	82470945	97	21925											
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26949245	26949245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NOVA1	NM_006489	exon3	c.A385G	p.K129E	CTGTCTTGGCCAC	.	85	14	104	0	.	229	C	26949245	T	C	26949245	3	2	174	1	0	0	0	0	1	0	0	0	10554	1821	63	2	1181	2	NOVA1	14	26949245	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	2070650	26949245	80400295	98	21926											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64628942	64628942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SYNE2	NM_182914	exon88	c.T16247C	p.M5416T	TCAGCATGTCTGG	.	54	11	57	0	.	164	C	64628942	T	C	64628942	3	2	174	1	0	0	0	0	1	0	0	0	15443	1464	51	2	16593	2	SYNE2	14	64628942	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	37679697	64628942	42720598	99	21927											
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	71444965	71444965	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PCNX	NM_014982	exon6	c.G1911A	p.E637E	TCCTGAGGGCAGA	.	43	5	54	0	.	91	A	71444965	G	A	71444965	2	1	174	1	0	0	0	0	0	0	0	1	11591	991	35	3		3	PCNX	14	71444965	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	6816023	71444965	35904575	100	21928											
PSEN1	5663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73653618	73653618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PSEN1	NM_000021	exon6	c.A538G	p.I180V	TCATTCATTTACT	.	141	26	155	0	.	659	G	73653618	A	G	73653618	3	3	174	1	0	0	0	0	1	0	0	0	12650	217	8	2	552	2	PSEN1	14	73653618	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	2208653	73653618	33695922	101	21929											
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79933569	79933569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NRXN3	NM_004796	exon13	c.G2149A	p.A717T	GCTGGCGCTACGT	.	81	11	67	0	.	587	A	79933569	G	A	79933569	3	1	174	1	0	0	0	0	1	0	0	0	10667	1087	38	1	2442	1	NRXN3	14	79933569	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	6279951	79933569	27415971	102	21930											
CKMT1B	1159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	43888719	43888719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CKMT1B	NM_020990	exon7	c.G866A	p.G289D	GCCGAGGCCTCAA	.	156	24	167	0	.	90	A	43888719	G	A	43888719	3	1	174	1	0	0	0	0	1	0	0	0	3450	1203	42	3	888	3	CKMT1B	15	43888719	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		43888719	58642673	103	21931											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48058317	48058317	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SEMA6D	NM_153617	exon15	c.T1584G	p.S528S	TGCATCTCGTGAC	.	108	23	113	0	.	138	G	48058317	T	G	48058317	2	3	174	1	0	0	0	0	0	0	0	1	14042	1538	54	5		5	SEMA6D	15	48058317	Silent	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	4169598	48058317	54473075	104	21932											
DIS3L	115752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	66615033	66615052	+	Frame_Shift_Del	DEL	GATGCCAGTAAACACACCAG	GATGCCAGTAAACACACCAG	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	GATGCCAGTAAACACACCAG	GATGCCAGTAAACACACCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	DIS3L	NM_001143688	exon10	c.1335_1354del	p.445_452del	GTGTGAGATGCCA	.	95	10	79	0	.	92	-	66615052	GATGCCAGTAAACACACCAG	-	66615033	7	5	174	1	0	1	0	1	0	0	0	0	4536	933	33	0	1373	0	DIS3L	15	66615033	Frame_Shift_Del	DEL	GATGCCAGTAAACACACCAG	TCGA-MI-A75E-01A-11D-A32G-10	18556716	66615033	35916359	105	21933											
PRSS36	146547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31150725	31150725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRSS36	NM_173502	exon15	c.C2302G	p.P768A	GGGGCGGTGCTGA	.	84	16	103	0	.	91	C	31150725	G	C	31150725	3	2	174	1	0	0	0	0	1	0	0	0	12625	1261	44	4	269	4	PRSS36	16	31150725	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		31150725	59204028	106	21934											
SHCBP1	79801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46617445	46617445	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SHCBP1	NM_024745	exon12	c.C1676G	p.A559G	TCTTCAGCATTTT	.	320	34	342	0	.	154	C	46617445	G	C	46617445	3	2	174	1	0	0	0	0	1	0	0	0	14274	971	34	4	350	4	SHCBP1	16	46617445	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	15466720	46617445	43737308	107	21935											
TNS4	84951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38638655	38638655	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TNS4	NM_032865	exon7	c.T1515C	p.N505N	GAGGTCATTGCTG	.	50	8	29	0	.	155	G	38638655	A	G	38638655	2	3	174	1	0	0	0	0	0	0	0	1	16342	214	8	2		2	TNS4	17	38638655	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10		38638655	42556555	108	21936											
TBX4	9496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59557329	59557329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TBX4	NM_018488	exon6	c.A790G	p.S264G	CTGCAGAGGTGGG	.	79	10	65	0	.	227	G	59557329	A	G	59557329	3	3	174	1	0	0	0	0	1	0	0	0	15657	318	11	2	812	2	TBX4	17	59557329	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	20918674	59557329	21637881	109	21937											
LAMA1	284217	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	6955380	6955380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LAMA1	NM_005559	exon57	c.C8179T	p.P2727S	TAAAAGGCAAGAT	.	58	8	55	0	.	149	A	6955380	G	A	6955380	3	1	174	1	0	0	0	0	1	0	0	0	8605	1203	42	3	1076	3	LAMA1	18	6955380	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		6955380	71121868	110	21938											
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14763926	14763926	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ANKRD30B	NM_001145029	exon7	c.A1062C	p.A354A	GCCAGCAAAAGAA	.	57	8	51	0	.	24	C	14763926	A	C	14763926	2	2	174	1	0	0	0	0	0	0	0	1	659	117	5	5		5	ANKRD30B	18	14763926	Silent	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	7808546	14763926	63313322	111	21939											
KCNG2	26251	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	77659126	77659126	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	KCNG2	NM_012283	exon2	c.C711T	p.S237S	GCGCTCCCTGCAG	.	26	6	32	0	.	90	T	77659126	C	T	77659126	2	4	174	1	0	0	0	0	0	0	0	1	8028	610	22	3		3	KCNG2	18	77659126	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	62895200	77659126	418122	112	21940											
SHC2	25759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	430742	430742	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SHC2	NM_012435	exon9	c.A1116G	p.P372P	AGGAGATGGGCCC	.	41	11	64	0	.	392	C	430742	T	C	430742	2	2	174	1	0	0	0	0	0	0	0	1	14271	1451	51	2		2	SHC2	19	430742	Silent	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10		430742	58698241	113	21941											
DOHH	83475	ucsc.edu;bcgsc.ca	37	19	3496791	3496791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	DOHH	NM_001145165	exon2	c.G22A	p.D8N	TGGCATCCACCTC	.	20	4	20	0	.	90	T	3496791	C	T	3496791	3	4	174	1	0	0	0	0	1	0	0	0	4695	855	30	3	902	3	DOHH	19	3496791	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	3066049	3496791	55632192	114	21942											
SLC44A2	57153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10742002	10742002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLC44A2	NM_020428	exon6	c.A382G	p.S128G	GCTCGCAGCTCCC	.	57	9	49	0	.	91	G	10742002	A	G	10742002	3	3	174	1	0	0	0	0	1	0	0	0	14636	188	7	2	439	2	SLC44A2	19	10742002	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	7245211	10742002	48386981	115	21943											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15292445	15292445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NOTCH3	NM_000435	exon17	c.T2734A	p.C912S	GCGGGCAGGTGCA	.	94	17	101	0	.	855	T	15292445	A	T	15292445	3	4	174	1	0	0	0	0	1	0	0	0	10550	188	7	4	4299	4	NOTCH3	19	15292445	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	4550443	15292445	43836538	116	21944											
HSH2D	84941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16265269	16265269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_032855	exon7	c.G442C	p.E148Q	GCCGAGGAAGCTG	.	33	10	34	0	.	.	C	16265269	G	C	16265269	3	2	174	1	0	0	0	0	1	0	0	0	7400	1175	41	4	456	4	HSH2D	19	16265269	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	972824	16265269	42863714	117	21945											
KCNN1	3780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18092581	18092581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	KCNN1	NM_002248	exon5	c.C562A	p.L188I	GTGTTCCTCATCT	.	63	9	74	0	.	22	A	18092581	C	A	18092581	3	1	174	1	0	0	0	0	1	0	0	0	8078	681	24	3	572	3	KCNN1	19	18092581	Missense_Mutation	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10	1827312	18092581	41036402	118	21946											
ZNF568	374900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37413702	37413702	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF568	NM_001204838	exon3	c.T30A	p.N10K	CAGCAATAGCTGT	.	53	9	47	0	.	136	A	37413702	T	A	37413702	3	1	174	1	0	0	0	0	1	0	0	0	17996	1403	49	4	32	4	ZNF568	19	37413702	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	19321121	37413702	21715281	119	21947											
PAK4	10298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39660216	39660216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PAK4	NM_001014832	exon2	c.G23A	p.R8Q	AGAAGCGGGTGGA	.	102	19	109	0	.	957	A	39660216	G	A	39660216	3	1	174	1	0	0	0	0	1	0	0	0	11403	1116	39	1	25	1	PAK4	19	39660216	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	2246514	39660216	19468767	120	21948											
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47425519	47425519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_004491	exon1	c.A3587T	p.Q1196L	CATCCCAGGGTTA	.	41	5	60	0	.	.	T	47425519	A	T	47425519	3	4	174	1	0	0	0	0	1	0	0	0	6795	188	7	4	3589	4	ARHGAP35	19	47425519	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	7765303	47425519	11703464	121	21949											
SEL1L2	80343	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13830846	13830846	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SEL1L2	NM_001271539	exon17	c.G1599T	p.L533L	AAAAAACAGGATA	.	62	14	50	0	.	70	A	13830846	C	A	13830846	2	1	174	1	0	0	0	0	0	0	0	1	14011	465	17	3		3	SEL1L2	20	13830846	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10		13830846	49194674	122	21950											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47864666	47864666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNFX1	NM_021035	exon14	c.A4895G	p.Y1632C	GTTCCATACCTCA	.	100	25	101	0	.	24	C	47864666	T	C	47864666	3	2	174	1	0	0	0	0	1	0	0	0	18202	1406	49	2	865	2	ZNFX1	20	47864666	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	34033820	47864666	15160854	123	21951											
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57266852	57266852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_001204872	exon2	c.A32G	p.Y11C	GAGGGTACCAACC	.	67	15	55	0	.	.	G	57266852	A	G	57266852	3	3	174	1	0	0	0	0	1	0	0	0	10574	406	14	2		2	NPEPL1	20	57266852	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10	9402186	57266852	5758668	124	21952											
NKAIN4	128414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61880213	61880213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NKAIN4	NM_152864	exon3	c.A227G	p.N76S	AAGACGTTCCAGG	.	46	9	38	0	.	68	C	61880213	T	C	61880213	3	2	174	1	0	0	0	0	1	0	0	0	10438	1725	60	2	419	2	NKAIN4	20	61880213	Missense_Mutation	SNP	T	TCGA-MI-A75E-01A-11D-A32G-10	4613361	61880213	1145307	125	21953											
APP	351	broad.mit.edu;bcgsc.ca	37	21	27372447	27372447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	APP	NM_001204302	exon7	c.C916T	p.R306C	ACCAGCGGGAGAT	.	82	17	84	1	.	91	A	27372447	G	A	27372447	3	1	174	1	0	0	0	0	1	0	0	0	815	1116	39	1	1444	1	APP	21	27372447	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10		27372447	20757448	126	21954											
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32754310	32754310	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RFPL3	NM_001098535	exon1	c.C252T	p.V84V	CATGGTCTCTCAG	.	137	25	119	0	.	91	T	32754310	C	T	32754310	2	4	174	1	0	0	0	0	0	0	0	1	13255	900	32	3		3	RFPL3	22	32754310	Silent	SNP	C	TCGA-MI-A75E-01A-11D-A32G-10		32754310	18550256	127	21955											
PICK1	9463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38469082	38469082	+	Missense_Mutation	SNP	G	G	A	rs199605777		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PICK1	NM_012407	exon10	c.G766A	p.V256M	CTGGACGTGAAGT	.	120	18	110	0	G|0.999;A|0.001	226	A	38469082	G	A	38469082	3	1	174	1	0	0	0	0	1	0	0	0	11881	1145	40	1	800	1	PICK1	22	38469082	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	5714772	38469082	12835484	128	21956											
PRR5-ARHGAP8	553158	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45255714	45255714	+	Silent	SNP	G	G	C	rs76060959	byfrequency	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRR5-ARHGAP8	NM_181334	exon14	c.G1347C	p.A449A	GCATGCGGTGAGT	.	36	10	51	0	A|0.007;G|0.993	161	C	45255714	G	C	45255714	2	2	174	1	0	0	0	0	0	0	0	1	12601	1130	39	4		4	PRR5-ARHGAP8	22	45255714	Silent	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	6786632	45255714	6048852	129	21957											
PKDREJ	10343	broad.mit.edu;mdanderson.org	37	22	46658708	46658708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PKDREJ	NM_006071	exon1	c.C512G	p.P171R	GGCCGCGGGCCTG	.	57	11	46	0	.	156	C	46658708	G	C	46658708	3	2	174	1	0	0	0	0	1	0	0	0	11970	1116	39	4	6253	4	PKDREJ	22	46658708	Missense_Mutation	SNP	G	TCGA-MI-A75E-01A-11D-A32G-10	1402994	46658708	4645858	130	21958											
NAP1L2	4674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	72433658	72433658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NAP1L2	NM_021963	exon1	c.T671C	p.I224T	GCCTCAATGTCGT	.	98	14	52	0	.	130	G	72433658	A	G	72433658	3	3	174	1	0	0	0	0	1	0	0	0	10157	101	4	2	715	2	NAP1L2	23	72433658	Missense_Mutation	SNP	A	TCGA-MI-A75E-01A-11D-A32G-10		72433658	82836902	131	21959											
TPRG1L	127262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3542442	3542442	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TPRG1L	NM_182752	exon3	c.A459G	p.K153K	CCCTAAATCGCTC	.	25	6	15	0	.	68	G	3542442	A	G	3542442	2	3	175	1	0	0	0	0	0	0	0	1	16416	98	4	2		2	TPRG1L	1	3542442	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		3542442	245708179	1	21960											
LRRC47	57470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3712543	3712543	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LRRC47	NM_020710	exon1	c.C498G	p.D166E	AAAGGAGTCTAGG	.	18	6	20	0	.	154	C	3712543	G	C	3712543	3	2	175	1	0	0	0	0	1	0	0	0	9004	1020	36	4	1281	4	LRRC47	1	3712543	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	170101	3712543	245538078	2	21961											
DFFB	1677	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3775376	3775376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DFFB	NM_004402	exon2	c.T209G	p.V70G	AGCTGGTGCTGCT	.	53	13	43	1	.	91	G	3775376	T	G	3775376	3	3	175	1	0	0	0	0	1	0	0	0	4453	1696	59	5	215	5	DFFB	1	3775376	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	62833	3775376	245475245	3	21962											
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	9117613	9117613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC2A5	NM_003039	exon3	c.G187T	p.E63X	AGTCTTCCATGAA	.	75	26	70	0	.	517	A	9117613	C	A	9117613	4	1	175	1	0	0	0	0	0	1	0	0	14548	864	30	3	1522	3	SLC2A5	1	9117613	Nonsense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	5342237	9117613	240133008	4	21963	135	2									
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9117614	9117614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC2A5	NM_003039	exon3	c.G186T	p.M62I	GTCTTCCATGAAT	.	75	26	70	0	.	517	A	9117614	C	A	9117614	3	1	175	1	0	0	0	0	1	0	0	0	14548	594	21	3	1523	3	SLC2A5	1	9117614	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	1	9117614	240133007	5	21964	135	2									
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44422488	44422488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IPO13	NM_014652	exon5	c.A1111T	p.I371F	GATGATATTCTAT	.	38	19	31	0	.	226	T	44422488	A	T	44422488	3	4	175	1	0	0	0	0	1	0	0	0	7794	449	16	4	1129	4	IPO13	1	44422488	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	35304874	44422488	204828133	6	21965											
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70881649	70881649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CTH	NM_153742	exon2	c.A179G	p.Y60C	TTGAATATAGCCG	.	60	23	55	0	.	91	G	70881649	A	G	70881649	3	3	175	1	0	0	0	0	1	0	0	0	4009	449	16	2	185	2	CTH	1	70881649	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	26459161	70881649	178368972	7	21966											
FPGT	8790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74671023	74671023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FPGT	NM_003838	exon4	c.G1292A	p.G431E	CAGTTGGGGAAAA	.	137	28	129	0	.	91	A	74671023	G	A	74671023	3	1	175	1	0	0	0	0	1	0	0	0	6037	1232	43	3	1306	3	FPGT	1	74671023	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	3789374	74671023	174579598	8	21967											
RAB25	57111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156039508	156039508	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RAB25	NM_020387	exon4	c.C480G	p.T160T	CTCTACCAATGTT	.	188	48	126	0	.	227	G	156039508	C	G	156039508	2	3	175	1	0	0	0	0	0	0	0	1	12912	581	21	4		4	RAB25	1	156039508	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	81368485	156039508	93211113	9	21968											
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156294772	156294772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCT3	NM_005998	exon6	c.A413G	p.K138R	ATTTTCTTTAGGG	.	41	26	37	0	.	92	C	156294772	T	C	156294772	3	2	175	1	0	0	0	0	1	0	0	0	2954	1609	56	2	1260	2	CCT3	1	156294772	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	255264	156294772	92955849	10	21969											
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	161068351	161068351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KLHDC9	NM_001007255	exon1	c.G26T	p.R9L	CGGGTCGGGCCGC	.	125	29	62	0	.	22	T	161068351	G	T	161068351	3	4	175	1	0	0	0	0	1	0	0	0	8364	1116	39	1	28	1	KLHDC9	1	161068351	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	4773579	161068351	88182270	11	21970											
SFT2D2	375035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	168204373	168204373	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SFT2D2	NM_199344	exon4	c.A271T	p.K91X	CAGCTGAAGCGAA	.	213	119	136	0	.	69	T	168204373	A	T	168204373	4	4	175	1	0	0	0	0	0	1	0	0	14186	247	9	4	285	4	SFT2D2	1	168204373	Nonsense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	7136022	168204373	81046248	12	21971											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176905453	176905453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ASTN1	NM_004319	exon15	c.G2431T	p.V811F	ACCGGACCTTCCA	.	97	18	48	0	.	319	A	176905453	C	A	176905453	3	1	175	1	0	0	0	0	1	0	0	0	1064	507	18	3	1493	3	ASTN1	1	176905453	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	8701080	176905453	72345168	13	21972											
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178427346	178427346	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RASAL2	NM_170692	exon14	c.A2919G	p.E973E	CATGGAAGATTTC	.	59	12	42	0	.	155	G	178427346	A	G	178427346	2	3	175	1	0	0	0	0	0	0	0	1	13064	69	3	2		2	RASAL2	1	178427346	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	1521893	178427346	70823275	14	21973											
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	183209512	183209512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LAMC2	NM_005562	exon22	c.T3314A	p.L1105H	ACGGCCTCCTGCA	.	130	11	94	0	.	93	A	183209512	T	A	183209512	3	1	175	1	0	0	0	0	1	0	0	0	8615	1551	54	4	3400	4	LAMC2	1	183209512	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	4782166	183209512	66041109	15	21974											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	204429747	204429747	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PIK3C2B	NM_002646	exon7	c.C1353G	p.R451R	AAACTTGCGGCAG	.	144	9	60	0	.	1310	C	204429747	G	C	204429747	2	2	175	1	0	0	0	0	0	0	0	1	11910	1306	46	4		4	PIK3C2B	1	204429747	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	21220235	204429747	44820874	16	21975											
ENAH	55740	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	225707015	225707018	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TCTT	TCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ENAH	NM_001008493	exon5	c.684_687del	p.228_229del	TTCTTGTCTTTCT	.	93	22	56	0	.	516	-	225707018	TCTT	-	225707015	7	5	175	1	0	1	0	1	0	0	0	0	5111	1664	58	0	1132	0	ENAH	1	225707015	Frame_Shift_Del	DEL	TCTT	TCGA-MI-A75G-01A-11D-A32G-10	21277268	225707015	23543606	17	21976											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245849630	245849630	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KIF26B	NM_018012	exon12	c.T3345C	p.S1115S	GGCGTCTAGGGAG	.	98	29	68	0	.	25	C	245849630	T	C	245849630	2	2	175	1	0	0	0	0	0	0	0	1	8295	1509	53	2		2	KIF26B	1	245849630	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	20142615	245849630	3400991	18	21977											
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569656	248569656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR2T1	NM_030904	exon1	c.A361G	p.M121V	ATTGACATGATGT	.	83	32	61	0	.	69	G	248569656	A	G	248569656	3	3	175	1	0	0	0	0	1	0	0	0	11016	217	8	2	363	2	OR2T1	1	248569656	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	2720026	248569656	680965	19	21978											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1481040	1481040	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TPO	NM_175719	exon8	c.G1002T	p.P334P	CTCCCCGGCCCTA	.	74	7	29	0	.	332	T	1481040	G	T	1481040	2	4	175	1	0	0	0	0	0	0	0	1	16407	1103	39	1		1	TPO	2	1481040	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		1481040	241718333	20	21979											
DHX57	90957	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	39081308	39081308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DHX57	NM_198963	exon9	c.A1918G	p.R640G	ACAGTCTGGTGGC	.	76	24	73	1	.	228	C	39081308	T	C	39081308	3	2	175	1	0	0	0	0	1	0	0	0	4513	1588	55	2	2306	2	DHX57	2	39081308	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	37600268	39081308	204118065	21	21980											
CDKL4	344387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39414810	39414810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CDKL4	NM_001009565	exon6	c.C693A	p.N231K	AAACCCGTTACTT	.	77	37	58	0	.	334	T	39414810	G	T	39414810	3	4	175	1	0	0	0	0	1	0	0	0	3156	1136	40	1	266	1	CDKL4	2	39414810	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	333502	39414810	203784563	22	21981											
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43819108	43819108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	THADA	NM_001083953	exon3	c.A154G	p.I52V	AATGGATTTGTGA	.	128	62	99	0	.	228	C	43819108	T	C	43819108	3	2	175	1	0	0	0	0	1	0	0	0	15837	1493	52	2	5851	2	THADA	2	43819108	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	4404298	43819108	199380265	23	21982											
CNRIP1	25927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	68546450	68546450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CNRIP1	NM_001111101	exon1	c.A83G	p.D28G	TGCCCGTCCACCT	.	57	25	26	0	.	69	C	68546450	T	C	68546450	3	2	175	1	0	0	0	0	1	0	0	0	3633	1667	58	2	484	2	CNRIP1	2	68546450	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	24727342	68546450	174652923	24	21983											
PLEK	5341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	68613639	68613639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLEK	NM_002664	exon5	c.T478A	p.C160S	GGTAACTGCGTCA	.	77	16	50	0	.	91	A	68613639	T	A	68613639	3	1	175	1	0	0	0	0	1	0	0	0	12053	1580	55	4	496	4	PLEK	2	68613639	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	67189	68613639	174585734	25	21984											
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128380906	128380906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MYO7B	NM_001080527	exon28	c.A3697T	p.S1233C	GGCCTCAGCGACC	.	58	9	29	0	.	47	T	128380906	A	T	128380906	3	4	175	1	0	0	0	0	1	0	0	0	10083	188	7	4	3803	4	MYO7B	2	128380906	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	59767267	128380906	114818467	26	21985											
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144194492	144194492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ARHGAP15	NM_018460	exon8	c.C584T	p.S195L	AGGATTCAAGTTG	.	133	50	90	0	.	653	T	144194492	C	T	144194492	3	4	175	1	0	0	0	0	1	0	0	0	866	838	29	3	610	3	ARHGAP15	2	144194492	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	15813586	144194492	99004881	27	21986											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152322315	152322315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RIF1	NM_018151	exon30	c.C6281T	p.S2094F	GTAAATCTGAAGA	.	149	74	108	0	.	300	T	152322315	C	T	152322315	3	4	175	1	0	0	0	0	1	0	0	0	13359	913	32	3	6395	3	RIF1	2	152322315	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	8127823	152322315	90877058	28	21987											
GALNT3	2591	broad.mit.edu;mdanderson.org	37	2	166627194	166627194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GALNT3	NM_004482	exon2	c.G17T	p.R6L	ACTAGTCGCTTTA	.	23	14	9	0	.	92	A	166627194	C	A	166627194	3	1	175	1	0	0	0	0	1	0	0	0	6214	884	31	1	1924	1	GALNT3	2	166627194	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	14304879	166627194	76572179	29	21988											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168106334	168106334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	XIRP2	NM_152381	exon9	c.A8432T	p.D2811V	GATCTGACAGAGG	.	131	55	102	0	.	104	T	168106334	A	T	168106334	3	4	175	1	0	0	0	0	1	0	0	0	17427	275	10	4	8462	4	XIRP2	2	168106334	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	1479140	168106334	75093039	30	21989											
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178634089	178634089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDE11A	NM_016953	exon10	c.C1750T	p.H584Y	TTGCATGGTATGA	.	55	27	38	0	.	93	A	178634089	G	A	178634089	3	1	175	1	0	0	0	0	1	0	0	0	11631	1348	47	3	1095	3	PDE11A	2	178634089	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	10527755	178634089	64565284	31	21990											
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187351141	187351141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZC3H15	NM_018471	exon1	c.G32A	p.G11D	CCGGGGGCAGCAA	.	116	15	80	0	.	91	A	187351141	G	A	187351141	3	1	175	1	0	0	0	0	1	0	0	0	17564	1203	42	3	34	3	ZC3H15	2	187351141	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	8717052	187351141	55848232	32	21991											
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187627500	187627500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM171B	NM_177454	exon8	c.A2431G	p.T811A	AGCAAGACTAACA	.	241	102	186	0	.	141	G	187627500	A	G	187627500	3	3	175	1	0	0	0	0	1	0	0	0	5491	275	10	2	2461	2	FAM171B	2	187627500	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	276359	187627500	55571873	33	21992											
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207634821	207634821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FASTKD2	NM_001136193	exon3	c.A784G	p.I262V	GAACGTATCAATG	.	100	45	70	0	.	118	G	207634821	A	G	207634821	3	3	175	1	0	0	0	0	1	0	0	0	5686	449	16	2	790	2	FASTKD2	2	207634821	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	20007321	207634821	35564552	34	21993											
CRYGD	1421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	208986520	208986520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CRYGD	NM_006891	exon3	c.C402A	p.Y134X	CAGCTCGTAGAGG	.	98	48	80	0	.	90	T	208986520	G	T	208986520	4	4	175	1	0	0	0	0	0	1	0	0	3917	1140	40	1	126	1	CRYGD	2	208986520	Nonsense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1351699	208986520	34212853	35	21994											
SP140L	93349	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	231256927	231256927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SP140L	NM_138402	exon12	c.C1090A	p.L364I	TGGCCCCTACGAC	.	110	53	106	0	.	23	A	231256927	C	A	231256927	3	1	175	1	0	0	0	0	1	0	0	0	14963	680	24	3	1136	3	SP140L	2	231256927	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	22270407	231256927	11942446	36	21995											
SAG	6295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234217900	234217900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SAG	NM_000541	exon2	c.G65T	p.R22L	TCTCCCGGGACAA	.	87	39	69	0	.	23	T	234217900	G	T	234217900	3	4	175	1	0	0	0	0	1	0	0	0	13808	1116	39	1	67	1	SAG	2	234217900	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2960973	234217900	8981473	37	21996											
SCLY	51540	broad.mit.edu;mdanderson.org	37	2	239006994	239006994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SCLY	NM_016510	exon12	c.T1360C	p.X454Q	CAGGCCTAGCACT	.	12	4	9	0	.	92	C	239006994	T	C	239006994	3	2	175	1	0	0	0	0	1	0	0	0	13907	1535	53	2	1382	2	SCLY	2	239006994	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	4789094	239006994	4192379	38	21997											
CHL1	10752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	384669	384669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CHL1	NM_001253388	exon6	c.A682G	p.K228E	TCAGTAAAGCATG	.	207	55	132	2	.	583	G	384669	A	G	384669	3	3	175	1	0	0	0	0	1	0	0	0	3349	15	1	2	704	2	CHL1	3	384669	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		384669	197637761	39	21998											
C3orf20	84077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14745959	14745959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C3orf20	NM_032137	exon7	c.A994G	p.T332A	TCTCAGACCCCGG	.	205	30	119	0	.	94	G	14745959	A	G	14745959	3	3	175	1	0	0	0	0	1	0	0	0	2213	275	10	2	1012	2	C3orf20	3	14745959	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	14361290	14745959	183276471	40	21999											
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42243973	42243973	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TRAK1	NM_001265608	exon13	c.1473delC	p.G491fs	CCCAGGCTCCCAC	.	211	26	123	0	.	91	-	42243973	C	-	42243973	7	5	175	1	0	1	0	1	0	0	0	0	16446	784	28	0	1639	0	TRAK1	3	42243973	Frame_Shift_Del	DEL	C	TCGA-MI-A75G-01A-11D-A32G-10	27498014	42243973	155778457	41	22000	136	2									
TRAK1	22906	hgsc.bcm.edu;bcgsc.ca	37	3	42243975	42243976	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.S492*	CAGGCTCCCACGA	.	207	25	126	0	.	.	AA	42243976	CC	AA	42243975	4	1	175	1	0	0	0	0	0	1	0	0	16446	855	30	3	1641	3	TRAK1	3	42243975	Nonsense_Mutation	DNP	CC	TCGA-MI-A75G-01A-11D-A32G-10	2	42243975	155778455	42	22001	136	2									
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42735224	42735225	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.L378K	AGCCACAGTGTGG	.	101	19	60	0	.	.	TT	42735225	AG	TT	42735224	3	4	175	1	0	0	0	0	1	0	0	0	7090	188	7	4	393	4	HHATL	3	42735224	Missense_Mutation	DNP	AG	TCGA-MI-A75G-01A-11D-A32G-10	491249	42735224	155287206	43	22002											
CCR1	1230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46245458	46245458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCR1	NM_001295	exon2	c.G347T	p.G116V	TACAAGCCTGTGT	.	166	44	108	1	.	660	A	46245458	C	A	46245458	3	1	175	1	0	0	0	0	1	0	0	0	2939	739	26	3	724	3	CCR1	3	46245458	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	3510234	46245458	151776972	44	22003											
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46307579	46307579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCR3	NM_178328	exon3	c.G993T	p.K331N	CCGGAAGTACCTG	.	63	23	29	0	.	660	T	46307579	G	T	46307579	3	4	175	1	0	0	0	0	1	0	0	0	2942	1020	36	3	999	3	CCR3	3	46307579	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	62121	46307579	151714851	45	22004											
CCR2	729230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46400024	46400024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCR2	NM_001123396	exon2	c.T1006C	p.Y336H	GTTTTCTACAGGG	.	79	22	41	0	.	568	C	46400024	T	C	46400024	3	2	175	1	0	0	0	0	1	0	0	0	2941	1522	53	2	1008	2	CCR2	3	46400024	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	92445	46400024	151622406	46	22005											
LTF	4057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	46480950	46480950	+	Missense_Mutation	SNP	G	G	T	rs149901533	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LTF	NM_002343	exon15	c.C1745A	p.A582D	TCCTTAGCCCATG	.	130	37	66	0	G|0.999;A|0.000	703	T	46480950	G	T	46480950	3	4	175	1	0	0	0	0	1	0	0	0	9079	971	34	3	399	3	LTF	3	46480950	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	80926	46480950	151541480	47	22006											
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46730917	46730917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ALS2CL	NM_001190707	exon2	c.A14T	p.E5V	GCCTCCTCAGGGT	.	119	15	66	0	.	155	A	46730917	T	A	46730917	3	1	175	1	0	0	0	0	1	0	0	0	551	1551	54	4	2947	4	ALS2CL	3	46730917	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	249967	46730917	151291513	48	22007											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48686612	48686612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CELSR3	NM_001407	exon17	c.G6509T	p.W2170L	TCCAGCCAACCCT	.	66	13	50	0	.	523	A	48686612	C	A	48686612	3	1	175	1	0	0	0	0	1	0	0	0	3223	595	21	3	3505	3	CELSR3	3	48686612	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	1955695	48686612	149335818	49	22008											
TCTA	6988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49449889	49449889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TCTA	NM_022171	exon1	c.G30T	p.L10F	GGCCTTGCAGGCT	.	46	12	48	0	.	90	T	49449889	G	T	49449889	3	4	175	1	0	0	0	0	1	0	0	0	15713	1310	46	3	32	3	TCTA	3	49449889	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	763277	49449889	148572541	50	22009											
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50256338	50256338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC38A3	NM_006841	exon14	c.G1264T	p.V422F	CTGCTGGTCATCT	.	69	13	36	0	.	67	T	50256338	G	T	50256338	3	4	175	1	0	0	0	0	1	0	0	0	14605	1261	44	3	1314	3	SLC38A3	3	50256338	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	806449	50256338	147766092	51	22010											
DNAH12	201625	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	57419403	57419403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DNAH12	NM_178504	exon31	c.T4739A	p.L1580H	CCAAAAAGTTGGC	.	70	8	37	0	.	47	T	57419403	A	T	57419403	3	4	175	1	0	0	0	0	1	0	0	0	4600	72	3	4	4655	4	DNAH12	3	57419403	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	7163065	57419403	140603027	52	22011											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	77607255	77607255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ROBO2	NM_002942	exon9	c.A1392T	p.R464S	TCCAAGAGCAACA	.	170	11	89	0	.	328	T	77607255	A	T	77607255	3	4	175	1	0	0	0	0	1	0	0	0	13514	301	11	4	1428	4	ROBO2	3	77607255	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	20187852	77607255	120415175	53	22012											
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99567271	99567272	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.P1083H	TGCTGAAGGGCTG	.	228	38	149	0	.	.	GT	99567272	AG	GT	99567271	3	3	175	1	0	0	0	0	1	0	0	0	5895	59	3	2	187	2	FILIP1L	3	99567271	Missense_Mutation	DNP	AG	TCGA-MI-A75G-01A-11D-A32G-10	21960016	99567271	98455159	54	22013											
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111780660	111780660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMPRSS7	NM_001042575	exon9	c.A959T	p.Q320L	ATCATCAGACAAT	.	122	35	71	0	.	70	T	111780660	A	T	111780660	3	4	175	1	0	0	0	0	1	0	0	0	16249	188	7	4	989	4	TMPRSS7	3	111780660	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	12213389	111780660	86241770	55	22014											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121413069	121413069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GOLGB1	NM_001256486	exon13	c.G6301T	p.A2101S	TGTCTGCTAGGAC	.	67	9	42	0	.	161	A	121413069	C	A	121413069	3	1	175	1	0	0	0	0	1	0	0	0	6565	797	28	3	3533	3	GOLGB1	3	121413069	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	9632409	121413069	76609361	56	22015											
ZXDC	79364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	126194031	126194032	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZXDC	NM_025112	exon1	c.678_679insA	p.K226fs	GTGCCGCTTGAGC	.	217	34	120	0	.	91	T	126194032	-	T	126194031	7	5	175	1	0	1	1	0	0	0	0	0	18249	796	28	0	1944	0	ZXDC	3	126194031	Frame_Shift_Ins	INS	-	TCGA-MI-A75G-01A-11D-A32G-10	4780962	126194031	71828399	57	22016											
NMNAT3	349565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139297767	139297767	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NMNAT3	NM_178177	exon3	c.G129A	p.V43V	AGGGTCCACCCGG	.	99	18	87	0	.	90	T	139297767	C	T	139297767	2	4	175	1	0	0	0	0	0	0	0	1	10500	581	21	3		3	NMNAT3	3	139297767	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	13103736	139297767	58724663	58	22017											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142217617	142217617	+	Splice_Site	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATR	NM_001184	exon33	c.5381-1G>T	.	TTCCATCTGAAAA	.	142	42	110	0	.	1139	A	142217617	C	A	142217617	5	1	175	1	0	0	0	0	0	0	1	0	1204	927	32	3	2618	3	ATR	3	142217617	Splice_Site	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2919850	142217617	55804813	59	22018											
YEATS2	55689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183480001	183480001	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	YEATS2	NM_018023	exon15	c.C1881A	p.S627S	TGTGTCCCCTCAA	.	47	10	46	0	.	138	A	183480001	C	A	183480001	2	1	175	1	0	0	0	0	0	0	0	1	17469	610	22	3		3	YEATS2	3	183480001	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	41262384	183480001	14542429	60	22019											
TMEM33	55161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	41951403	41951403	+	Splice_Site	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMEM33	NM_018126	exon6	c.614+1G>T	.	TTGTCGGTAAGCT	.	25	11	23	0	.	91	T	41951403	G	T	41951403	5	4	175	1	0	0	0	0	0	0	1	0	16153	1275	44	3	637	3	TMEM33	4	41951403	Splice_Site	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		41951403	149202873	61	22020											
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42571193	42571193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATP8A1	NM_006095	exon15	c.G1325A	p.C442Y	GGAGAGCAGCCAT	.	340	73	268	0	.	92	T	42571193	C	T	42571193	3	4	175	1	0	0	0	0	1	0	0	0	1192	710	25	3	2261	3	ATP8A1	4	42571193	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	619790	42571193	148583083	62	22021											
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74285252	74285252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ALB	NM_000477	exon13	c.C1681T	p.P561S	CACAAGCCCAAGG	.	30	15	30	0	.	96	T	74285252	C	T	74285252	3	4	175	1	0	0	0	0	1	0	0	0	486	739	26	3	1731	3	ALB	4	74285252	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	31714059	74285252	116869024	63	22022											
DSPP	1834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88535128	88535128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DSPP	NM_014208	exon5	c.C1314A	p.H438Q	TGGACACAGCAAT	.	191	28	145	0	.	90	A	88535128	C	A	88535128	3	1	175	1	0	0	0	0	1	0	0	0	4782	477	17	3	1328	3	DSPP	4	88535128	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	14249876	88535128	102619148	64	22023											
DNAJB14	79982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100822217	100822218	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DNAJB14	NM_001031723	exon8	c.1108_1109insA	p.E370fs	GCCGCTCTAATTC	.	237	97	192	0	.	226	T	100822218	-	T	100822217	7	5	175	1	0	1	1	0	0	0	0	0	4619	922	32	0	35	0	DNAJB14	4	100822217	Frame_Shift_Ins	INS	-	TCGA-MI-A75G-01A-11D-A32G-10	12287089	100822217	90332059	65	22024											
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110915962	110915962	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EGF	NM_001963	exon20	c.C2931T	p.P977P	ATGTCCCCTGTCC	.	62	19	42	0	.	524	T	110915962	C	T	110915962	2	4	175	1	0	0	0	0	0	0	0	1	4962	610	22	3		3	EGF	4	110915962	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	10093745	110915962	80238314	66	22025											
EDNRA	1909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148441067	148441067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EDNRA	NM_001957	exon3	c.C485A	p.P162H	TGTTCCCCTTTTT	.	112	53	75	0	.	586	A	148441067	C	A	148441067	3	1	175	1	0	0	0	0	1	0	0	0	4919	623	22	3	491	3	EDNRA	4	148441067	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	37525105	148441067	42713209	67	22026											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7707833	7707833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADCY2	NM_020546	exon9	c.C1283A	p.S428Y	ACATTTCTTCTGT	.	94	28	56	0	.	97	A	7707833	C	A	7707833	3	1	175	1	0	0	0	0	1	0	0	0	294	913	32	3	1317	3	ADCY2	5	7707833	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10		7707833	173207427	68	22027											
C5orf22	55322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31538578	31538578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C5orf22	NM_018356	exon4	c.T589G	p.S197A	TGTGACTCTTCTT	.	176	56	133	0	.	92	G	31538578	T	G	31538578	3	3	175	1	0	0	0	0	1	0	0	0	2285	1551	54	5	603	5	C5orf22	5	31538578	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	23830745	31538578	149376682	69	22028											
ERBB2IP	55914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	65370901	65370901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ERBB2IP	NM_001253699	exon23	c.A3827G	p.N1276S	AGGCAAATTATAG	.	219	65	151	2	.	653	G	65370901	A	G	65370901	3	3	175	1	0	0	0	0	1	0	0	0	5207	101	4	2	3761	2	ERBB2IP	5	65370901	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	33832323	65370901	115544359	70	22029											
AGGF1	55109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76342325	76342325	+	Missense_Mutation	SNP	A	A	G	rs149788789	byfrequency	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	AGGF1	NM_018046	exon6	c.A1024G	p.I342V	AATACTATAGAGT	.	232	60	149	0	A|0.999;G|0.001	117	G	76342325	A	G	76342325	3	3	175	1	0	0	0	0	1	0	0	0	382	449	16	2	1046	2	AGGF1	5	76342325	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	10971424	76342325	104572935	71	22030											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127685696	127685696	+	Silent	SNP	A	A	G	rs183336575	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBN2	NM_001999	exon22	c.T2814C	p.D938D	AGCTGTATCTGTA	.	71	7	54	0	A|0.999;C|0.000	146	G	127685696	A	G	127685696	2	3	175	1	0	0	0	0	0	0	0	1	5703	463	16	2		2	FBN2	5	127685696	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	51343371	127685696	53229564	72	22031											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127704957	127704957	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBN2	NM_001999	exon16	c.A2166G	p.A722A	GGTCACTGCACCG	.	92	16	60	0	.	146	C	127704957	T	C	127704957	2	2	175	1	0	0	0	0	0	0	0	1	5703	1567	55	2		2	FBN2	5	127704957	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	19261	127704957	53210303	73	22032											
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	129520910	129520910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CHSY3	NM_175856	exon3	c.A2075T	p.K692M	CAATGAAGGGAGA	.	135	12	93	0	.	25	T	129520910	A	T	129520910	3	4	175	1	0	0	0	0	1	0	0	0	3413	72	3	4	2085	4	CHSY3	5	129520910	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	1815953	129520910	51394350	74	22033											
SLC4A9	83697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139740530	139740530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC4A9	NM_001258428	exon2	c.C436T	p.P146S	GACTGCCCAGCTC	.	74	13	57	0	.	67	T	139740530	C	T	139740530	3	4	175	1	0	0	0	0	1	0	0	0	14660	623	22	3	370	3	SLC4A9	5	139740530	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	10219620	139740530	41174730	75	22034											
PCDH1	5097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141248170	141248170	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCDH1	NM_032420	exon2	c.A867G	p.L289L	CTCAGATAGTTCG	.	87	11	52	0	.	95	C	141248170	T	C	141248170	2	2	175	1	0	0	0	0	0	0	0	1	11506	1393	49	2		2	PCDH1	5	141248170	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	1507640	141248170	39667090	76	22035											
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143586687	143586687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KCTD16	NM_020768	exon3	c.G410A	p.S137N	GCCACAGTGACTT	.	60	10	40	0	.	137	A	143586687	G	A	143586687	3	1	175	1	0	0	0	0	1	0	0	0	8103	1029	36	3	412	3	KCTD16	5	143586687	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2338517	143586687	37328573	77	22036											
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147788727	147788727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBXO38	NM_001271723	exon8	c.C909G	p.C303W	AGCTTGCAAAAAT	.	205	57	150	0	.	231	G	147788727	C	G	147788727	3	3	175	1	0	0	0	0	1	0	0	0	5746	718	25	4	935	4	FBXO38	5	147788727	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	4202040	147788727	33126533	78	22037											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150925186	150925186	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAT2	NM_001447	exon9	c.C5502A	p.P1834P	GAAAGAGGGCATG	.	129	26	73	0	.	96	T	150925186	G	T	150925186	2	4	175	1	0	0	0	0	0	0	0	1	5690	987	35	3		3	FAT2	5	150925186	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	3136459	150925186	29990074	79	22038											
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156934075	156934075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADAM19	NM_033274	exon10	c.G979A	p.G327R	TGACTCCTCCAGA	.	139	32	100	0	.	294	T	156934075	C	T	156934075	3	4	175	1	0	0	0	0	1	0	0	0	240	690	24	3	1833	3	ADAM19	5	156934075	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	6008889	156934075	23981185	80	22039											
GPRIN1	114787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176025588	176025588	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GPRIN1	NM_052899	exon2	c.G1248A	p.V416V	TGGATCCACCTTG	.	81	27	63	0	.	92	T	176025588	C	T	176025588	2	4	175	1	0	0	0	0	0	0	0	1	6729	581	21	3		3	GPRIN1	5	176025588	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	19091513	176025588	4889672	81	22040											
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26056379	26056379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HIST1H1C	NM_005319	exon1	c.T278C	p.L93P	TGCACCAGAGTGC	.	129	60	65	0	.	231	G	26056379	A	G	26056379	3	3	175	1	0	0	0	0	1	0	0	0	7124	188	7	2	367	2	HIST1H1C	6	26056379	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		26056379	145058688	82	22041											
BTN1A1	696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26505270	26505270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BTN1A1	NM_001732	exon3	c.G545A	p.G182E	CCAAGGGAGAGAA	.	205	88	101	1	.	92	A	26505270	G	A	26505270	3	1	175	1	0	0	0	0	1	0	0	0	1559	1174	41	3	555	3	BTN1A1	6	26505270	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	448891	26505270	144609797	83	22042											
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35287441	35287441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DEF6	NM_022047	exon8	c.A1356C	p.E452D	AGATGAAGAATCT	.	164	64	91	0	.	227	C	35287441	A	C	35287441	3	2	175	1	0	0	0	0	1	0	0	0	4386	69	3	5	1386	5	DEF6	6	35287441	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	8782171	35287441	135827626	84	22043											
BYSL	705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41889314	41889314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BYSL	NM_004053	exon1	c.A14T	p.K5M	AATTCAAGGCGGC	.	119	35	76	0	.	90	T	41889314	A	T	41889314	3	4	175	1	0	0	0	0	1	0	0	0	1576	72	3	4	16	4	BYSL	6	41889314	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	6601873	41889314	129225753	85	22044											
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46787312	46787312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MEP1A	NM_005588	exon7	c.A427G	p.I143V	ATTTCCATTGGCC	.	95	53	59	0	.	183	G	46787312	A	G	46787312	3	3	175	1	0	0	0	0	1	0	0	0	9475	217	8	2	453	2	MEP1A	6	46787312	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	4897998	46787312	124327755	86	22045											
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88138481	88138481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C6orf165	NM_001031743	exon9	c.G1098T	p.M366I	AGTGATGCAATGT	.	197	32	143	0	.	90	T	88138481	G	T	88138481	3	4	175	1	0	0	0	0	1	0	0	0	2341	1319	46	3	1128	3	C6orf165	6	88138481	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	41351169	88138481	82976586	87	22046											
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	93969103	93969103	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EPHA7	NM_004440	exon10	c.C1893T	p.S631S	AATACAGGAGGCA	.	92	62	90	0	.	1453	A	93969103	G	A	93969103	2	1	175	1	0	0	0	0	0	0	0	1	5172	987	35	3		3	EPHA7	6	93969103	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	5830622	93969103	77145964	88	22047											
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	110540596	110540596	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CDC40	NM_015891	exon11	c.A1120T	p.K374X	AACCGAAAAGTAC	.	115	18	99	0	.	90	T	110540596	A	T	110540596	4	4	175	1	0	0	0	0	0	1	0	0	3070	15	1	4	1162	4	CDC40	6	110540596	Nonsense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	16571493	110540596	60574471	89	22048											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129588356	129588356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LAMA2	NM_000426	exon16	c.G2314A	p.E772K	ACTGGAGAATGCC	.	69	9	67	0	.	162	A	129588356	G	A	129588356	3	1	175	1	0	0	0	0	1	0	0	0	8606	943	33	3	2376	3	LAMA2	6	129588356	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	19047760	129588356	41526711	90	22049											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139265148	139265148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	REPS1	NM_001128617	exon6	c.A758G	p.Q253R	GTTGTCTGGTCCT	.	106	65	92	0	.	522	C	139265148	T	C	139265148	3	2	175	1	0	0	0	0	1	0	0	0	13228	1580	55	2	1692	2	REPS1	6	139265148	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	9676792	139265148	31849919	91	22050											
RMND1	55005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151751308	151751308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RMND1	NM_017909	exon5	c.G694A	p.G232R	CAGCTCCTTCCCT	.	389	56	322	0	.	90	T	151751308	C	T	151751308	3	4	175	1	0	0	0	0	1	0	0	0	13396	690	24	3	687	3	RMND1	6	151751308	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	12486160	151751308	19363759	92	22051											
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44798889	44798889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZMIZ2	NM_174929	exon6	c.G823A	p.G275R	TATCCAGGGCAGC	.	80	20	60	1	.	137	A	44798889	G	A	44798889	3	1	175	1	0	0	0	0	1	0	0	0	17694	1000	35	3	845	3	ZMIZ2	7	44798889	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		44798889	114339774	93	22052											
WBSCR27	155368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73256365	73256365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	WBSCR27	NM_152559	exon2	c.G106T	p.A36S	CCGGAGCCCAGCG	.	125	15	34	0	.	90	A	73256365	C	A	73256365	3	1	175	1	0	0	0	0	1	0	0	0	17263	739	26	3	651	3	WBSCR27	7	73256365	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	28457476	73256365	85882298	94	22053											
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81374398	81374398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HGF	NM_000601	exon6	c.C664A	p.L222I	CCATGAGACCTCG	.	59	11	35	0	.	516	T	81374398	G	T	81374398	3	4	175	1	0	0	0	0	1	0	0	0	7085	942	33	3	1586	3	HGF	7	81374398	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	8118033	81374398	77764265	95	22054											
ARPC1B	10095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98987539	98987539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ARPC1B	NM_005720	exon5	c.A404G	p.K135R	TTTGCAAGCACAT	.	151	30	52	0	.	90	G	98987539	A	G	98987539	3	3	175	1	0	0	0	0	1	0	0	0	970	72	3	2	418	2	ARPC1B	7	98987539	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	17613141	98987539	60151124	96	22055											
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99695002	99695002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MCM7	NM_005916	exon10	c.A1123G	p.I375V	TGTTGATGTTGCC	.	96	21	37	0	.	651	C	99695002	T	C	99695002	3	2	175	1	0	0	0	0	1	0	0	0	9392	1464	51	2	1060	2	MCM7	7	99695002	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	707463	99695002	59443661	97	22056											
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100190612	100190612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBXO24	NM_012172	exon5	c.G879T	p.E293D	TCAGGAGACCCAG	.	173	8	70	0	.	229	T	100190612	G	T	100190612	3	4	175	1	0	0	0	0	1	0	0	0	5735	933	33	3	940	3	FBXO24	7	100190612	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	495610	100190612	58948051	98	22057											
MOGAT3	346606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100839352	100839352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MOGAT3	NM_178176	exon7	c.C901T	p.L301F	GGTGGAGGCGCTG	.	67	21	39	0	.	92	A	100839352	G	A	100839352	3	1	175	1	0	0	0	0	1	0	0	0	9696	1000	35	3	128	3	MOGAT3	7	100839352	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	648740	100839352	58299311	99	22058											
HBP1	26959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106820464	106820464	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HBP1	NM_001244262	exon2	c.A156G	p.P52P	TTTGCCATCTTCA	.	120	31	85	0	.	91	G	106820464	A	G	106820464	2	3	175	1	0	0	0	0	0	0	0	1	6985	204	8	2		2	HBP1	7	106820464	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	5981112	106820464	52318199	100	22059											
SLC26A4	5172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107314761	107314761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC26A4	NM_000441	exon5	c.A568G	p.S190G	ATTGCCAGTGCCC	.	143	30	62	1	.	96	G	107314761	A	G	107314761	3	3	175	1	0	0	0	0	1	0	0	0	14519	188	7	2	582	2	SLC26A4	7	107314761	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	494297	107314761	51823902	101	22060											
RNF148	378925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122342607	122342620	+	Frame_Shift_Del	DEL	AGAATGATTCCCGA	AGAATGATTCCCGA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AGAATGATTCCCGA	AGAATGATTCCCGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RNF148	NM_198085	exon1	c.185_198del	p.62_66del	CAGAGGAGAATGA	.	117	23	59	0	.	204	-	122342620	AGAATGATTCCCGA	-	122342607	7	5	175	1	0	1	0	1	0	0	0	0	13449	291	11	0	723	0	RNF148	7	122342607	Frame_Shift_Del	DEL	AGAATGATTCCCGA	TCGA-MI-A75G-01A-11D-A32G-10	15027846	122342607	36796056	102	22061											
CADPS2	93664	broad.mit.edu;mdanderson.org	37	7	122526241	122526241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CADPS2	NM_001167940	exon1	c.G151T	p.G51C	CGCCGCCGCCGCC	.	68	13	13	0	.	94	A	122526241	C	A	122526241	3	1	175	1	0	0	0	0	1	0	0	0	2571	652	23	1	3903	1	CADPS2	7	122526241	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	183634	122526241	36612422	103	22062											
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139726111	139726111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PARP12	NM_022750	exon11	c.G1666T	p.A556S	CCACGGCCTTCCC	.	95	16	41	0	.	525	A	139726111	C	A	139726111	3	1	175	1	0	0	0	0	1	0	0	0	11457	739	26	3	447	3	PARP12	7	139726111	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	17199870	139726111	19412552	104	22063											
GIMAP6	474344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	150327197	150327197	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GIMAP6	NM_001244072	exon2	c.G34T	p.E12X	GATTCTCCTGGGG	.	106	11	45	0	.	93	A	150327197	C	A	150327197	4	1	175	1	0	0	0	0	0	1	0	0	6383	864	30	3	852	3	GIMAP6	7	150327197	Nonsense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	10601086	150327197	8811466	105	22064											
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151254299	151254299	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRKAG2	NM_016203	exon16	c.A1698G	p.T566T	CGTTTCTGTCTCC	.	177	36	75	0	.	658	C	151254299	T	C	151254299	2	2	175	1	0	0	0	0	0	0	0	1	12501	1567	55	2		2	PRKAG2	7	151254299	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	927102	151254299	7884364	106	22065											
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	156974809	156974809	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	UBE3C	NM_014671	exon8	c.G778C	p.V260L	CAACAAGTTTTTA	.	148	24	76	0	.	704	C	156974809	G	C	156974809	3	2	175	1	0	0	0	0	1	0	0	0	16878	1029	36	4	808	4	UBE3C	7	156974809	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	5720510	156974809	2163854	107	22066											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10470654	10470654	+	Silent	SNP	G	G	A	rs200317816		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RP1L1	NM_178857	exon4	c.C954T	p.D318D	GCTGCCGTCCTCA	.	95	44	57	0	G|0.999;A|0.001	139	A	10470654	G	A	10470654	2	1	175	1	0	0	0	0	0	0	0	1	13533	1136	40	1		1	RP1L1	8	10470654	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		10470654	135893368	108	22067											
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11705647	11705647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CTSB	NM_147780	exon8	c.A461G	p.Y154C	GCAGGATAGCCAC	.	78	38	54	0	.	90	C	11705647	T	C	11705647	3	2	175	1	0	0	0	0	1	0	0	0	4030	1406	49	2	578	2	CTSB	8	11705647	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	1234993	11705647	134658375	109	22068											
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15480657	15480657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TUSC3	NM_178234	exon2	c.T207G	p.N69K	AATGAATGGTGAT	.	93	34	66	0	.	516	G	15480657	T	G	15480657	3	3	175	1	0	0	0	0	1	0	0	0	16775	1461	51	5	213	5	TUSC3	8	15480657	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	3775010	15480657	130883365	110	22069	137	2									
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15480659	15480659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TUSC3	NM_178234	exon2	c.G209T	p.G70V	TGAATGGTGATAA	.	91	33	67	0	.	516	T	15480659	G	T	15480659	3	4	175	1	0	0	0	0	1	0	0	0	16775	1261	44	3	215	3	TUSC3	8	15480659	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2	15480659	130883363	111	22070	137	2									
MTMR7	9108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	17228586	17228586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MTMR7	NM_004686	exon3	c.C270A	p.C90X	GTCGTGGCAATCT	.	106	35	79	0	.	91	T	17228586	G	T	17228586	4	4	175	1	0	0	0	0	0	1	0	0	9948	1195	42	3	1760	3	MTMR7	8	17228586	Nonsense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1747927	17228586	129135436	112	22071											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48794637	48794637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRKDC	.	.	.	.	CTAACATGCCGTT	.	63	21	47	0	.	1515	C	48794637	T	C	48794637	3	2	175	1	0	0	0	0	1	0	0	0	12521	1464	51	2	7788	2	PRKDC	8	48794637	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	31566051	48794637	97569385	113	22072											
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61135274	61135274	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CA8	NM_004056	exon7	c.C672A	p.I224I	AGGTGGGATGGTG	.	69	28	62	0	.	90	T	61135274	G	T	61135274	2	4	175	1	0	0	0	0	0	0	0	1	2523	1164	41	3		3	CA8	8	61135274	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	12340637	61135274	85228748	114	22073											
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72211880	72211880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EYA1	NM_000503	exon8	c.C632T	p.S211L	TGCTGTGAACTAT	.	90	14	58	0	.	652	A	72211880	G	A	72211880	3	1	175	1	0	0	0	0	1	0	0	0	5328	1294	45	3	1190	3	EYA1	8	72211880	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	11076606	72211880	74152142	115	22074											
CTHRC1	115908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	104384015	104384015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CTHRC1	NM_138455	exon1	c.A131G	p.Q44R	TCCGGCAGAGGGA	.	158	40	96	0	.	91	G	104384015	A	G	104384015	3	3	175	1	0	0	0	0	1	0	0	0	4010	188	7	2	133	2	CTHRC1	8	104384015	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	32172135	104384015	41980007	116	22075											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110535606	110535606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PKHD1L1	NM_177531	exon76	c.C12475T	p.L4159F	ACTCCCCTTAGAA	.	123	7	91	0	.	145	T	110535606	C	T	110535606	3	4	175	1	0	0	0	0	1	0	0	0	11972	681	24	3	12777	3	PKHD1L1	8	110535606	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	6151591	110535606	35828416	117	22076											
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	128428491	128428491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001159542	exon1	c.A380G	p.E127G	AGAAGGAGAAGCT	.	73	34	32	0	.	.	G	128428491	A	G	128428491	3	3	175	1	0	0	0	0	1	0	0	0	12282	304	11	2	382	2	POU5F1B	8	128428491	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	17892885	128428491	17935531	118	22077											
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409382	21409382	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IFNA8	NM_002170	exon1	c.A207G	p.K69K	TGATAAACAGTTC	.	73	38	70	0	.	90	G	21409382	A	G	21409382	2	3	175	1	0	0	0	0	0	0	0	1	7543	40	2	2		2	IFNA8	9	21409382	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		21409382	119804049	119	22078											
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35685682	35685688	+	Frame_Shift_Del	DEL	CTTCTGC	CTTCTGC	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	CTTCTGC	CTTCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TPM2	NM_213674	exon3	c.330_336del	p.110_112del	CTCCAGCTTCTGC	.	48	17	54	0	.	515	-	35685688	CTTCTGC	-	35685682	7	5	175	1	0	1	0	1	0	0	0	0	16403	796	28	0	713	0	TPM2	9	35685682	Frame_Shift_Del	DEL	CTTCTGC	TCGA-MI-A75G-01A-11D-A32G-10	14276300	35685682	105527749	120	22079											
FAM189A2	9413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72000833	72000833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM189A2	NM_004816	exon9	c.G826T	p.D276Y	AAGAGTGACCCTG	.	58	24	65	0	.	90	T	72000833	G	T	72000833	3	4	175	1	0	0	0	0	1	0	0	0	5516	1290	45	3	856	3	FAM189A2	9	72000833	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	36315151	72000833	69212598	121	22080											
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	78965753	78965753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCSK5	NM_001190482	exon35	c.C4895A	p.A1632E	AAGGAGCGTTGAA	.	65	28	54	0	.	93	A	78965753	C	A	78965753	3	1	175	1	0	0	0	0	1	0	0	0	11603	783	27	1		1	PCSK5	9	78965753	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	6964920	78965753	62247678	122	22081											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79973288	79973288	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	VPS13A	NM_001018038	exon57	c.C7969G	p.H2657D	CAGATACATGGTG	.	111	40	64	0	.	161	G	79973288	C	G	79973288	3	3	175	1	0	0	0	0	1	0	0	0	17186	478	17	4	8195	4	VPS13A	9	79973288	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	1007535	79973288	61240143	123	22082											
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595192	129595192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZBTB43	NM_001135776	exon2	c.A404G	p.N135S	AGCTAAATCATGG	.	64	22	66	0	.	91	G	129595192	A	G	129595192	3	3	175	1	0	0	0	0	1	0	0	0	17541	101	4	2	406	2	ZBTB43	9	129595192	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	49621904	129595192	11618239	124	22083											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17157488	17157488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CUBN	NM_001081	exon7	c.G702A	p.M234I	CTCTCGCATTAAA	.	68	31	58	0	.	166	T	17157488	C	T	17157488	3	4	175	1	0	0	0	0	1	0	0	0	4051	710	25	3	10413	3	CUBN	10	17157488	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10		17157488	118377259	125	22084											
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25464991	25464991	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GPR158	NM_020752	exon1	c.C642T	p.A214A	CCTGGCCAACGCC	.	46	23	34	0	.	141	T	25464991	C	T	25464991	2	4	175	1	0	0	0	0	0	0	0	1	6663	581	21	3		3	GPR158	10	25464991	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	8307503	25464991	110069756	126	22085											
HHEX	3087	broad.mit.edu;mdanderson.org	37	10	94450055	94450055	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HHEX	NM_002729	exon1	c.G312T	p.P104P	CTTCCCGCGGACG	.	88	12	62	0	.	227	T	94450055	G	T	94450055	2	4	175	1	0	0	0	0	0	0	0	1	7091	1074	38	1		1	HHEX	10	94450055	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	68985064	94450055	41084692	127	22086											
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96006140	96006140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLCE1	NM_016341	exon8	c.T2858C	p.I953T	TTGATATACACAC	.	112	51	92	0	.	229	C	96006140	T	C	96006140	3	2	175	1	0	0	0	0	1	0	0	0	12034	1406	49	2	3170	2	PLCE1	10	96006140	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	1556085	96006140	39528607	128	22087											
LOXL4	84171	broad.mit.edu;mdanderson.org	37	10	100011440	100011440	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LOXL4	NM_032211	exon13	c.A1971T	p.A657A	GGCACATGCGTAG	.	62	8	44	0	.	230	A	100011440	T	A	100011440	2	1	175	1	0	0	0	0	0	0	0	1	8902	1451	51	4		4	LOXL4	10	100011440	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	4005300	100011440	35523307	129	22088											
NT5C2	22978	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	104899213	104899213	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NT5C2	NM_012229	exon4	c.C125G	p.A42G	TCCATTGCTAAAC	.	75	7	58	1	.	90	C	104899213	G	C	104899213	3	2	175	1	0	0	0	0	1	0	0	0	10687	1319	46	4	1624	4	NT5C2	10	104899213	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	4887773	104899213	30635534	130	22089											
BTBD16	118663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124090748	124090748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BTBD16	NM_144587	exon12	c.A1061T	p.Q354L	TCGACCAGGTTAC	.	81	18	62	0	.	91	T	124090748	A	T	124090748	3	4	175	1	0	0	0	0	1	0	0	0	1541	188	7	4	1103	4	BTBD16	10	124090748	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	19191535	124090748	11443999	131	22090											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1017897	1017897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC6	NM_005961	exon31	c.C4904A	p.T1635N	GCATGGGTAGGGG	.	282	30	285	0	.	23	T	1017897	G	T	1017897	3	4	175	1	0	0	0	0	1	0	0	0	9980	1261	44	3	2427	3	MUC6	11	1017897	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		1017897	133988619	132	22091											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1097846	1097847	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC2	NM_002457	exon37	c.6927_6928insC	p.V2309fs	CACTGTGCCCGGG	.	37	18	34	0	.	90	C	1097847	-	C	1097846	7	5	175	1	0	1	1	0	0	0	0	0	9975	1306	46	0	7073	0	MUC2	11	1097846	Frame_Shift_Ins	INS	-	TCGA-MI-A75G-01A-11D-A32G-10	79949	1097846	133908670	133	22092											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1248993	1248993	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_002458	exon7	c.C756A	p.A252A	GCCGGCCGGCAAC	.	56	15	57	0	.	.	A	1248993	C	A	1248993	2	1	175	1	0	0	0	0	0	0	0	1	9979	639	23	1		1	MUC5B	11	1248993	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	151147	1248993	133757523	134	22093											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1464728	1464728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BRSK2	NM_001256630	exon8	c.C781T	p.P261S	GCTCTGCCCTTCG	.	46	20	33	0	.	333	T	1464728	C	T	1464728	3	4	175	1	0	0	0	0	1	0	0	0	1524	739	26	3	673	3	BRSK2	11	1464728	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	215735	1464728	133541788	135	22094											
TRAF6	7189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36511424	36511424	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TRAF6	NM_004620	exon7	c.G1533A	p.E511E	AAAACCCTCCCTC	.	95	29	105	0	.	660	T	36511424	C	T	36511424	2	4	175	1	0	0	0	0	0	0	0	1	16442	680	24	3		3	TRAF6	11	36511424	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	35046696	36511424	98495092	136	22095											
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55322576	55322576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR4C15	NM_001001920	exon1	c.C794G	p.S265C	ACTTCTCCTTGTT	.	90	12	91	0	.	70	G	55322576	C	G	55322576	3	3	175	1	0	0	0	0	1	0	0	0	11048	855	30	4	796	4	OR4C15	11	55322576	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	18811152	55322576	79683940	137	22096											
ARAP1	116985	broad.mit.edu;mdanderson.org	37	11	72414044	72414044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ARAP1	NM_001040118	exon15	c.C2073A	p.F691L	CCCCGAGAAGCAG	.	26	4	25	0	.	91	T	72414044	G	T	72414044	3	4	175	1	0	0	0	0	1	0	0	0	838	933	33	3	2363	3	ARAP1	11	72414044	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	17091468	72414044	62592472	138	22097											
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99715953	99715953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CNTN5	NM_001243270	exon5	c.T536A	p.V179E	ACACTGTGGGGAG	.	56	15	43	0	.	366	A	99715953	T	A	99715953	3	1	175	1	0	0	0	0	1	0	0	0	3644	1696	59	4	550	4	CNTN5	11	99715953	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	27301909	99715953	35290563	139	22098											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	102984322	102984322	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DYNC2H1	NM_001377	exon2	c.A252G	p.E84E	ACCTGAAGTAATT	.	224	9	135	0	.	68	G	102984322	A	G	102984322	2	3	175	1	0	0	0	0	0	0	0	1	4846	69	3	2		2	DYNC2H1	11	102984322	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	3268369	102984322	32022194	140	22099											
DDI1	414301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103908253	103908253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DDI1	NM_001001711	exon1	c.C703A	p.P235T	GAGGCCCCCGAGA	.	102	58	76	0	.	137	A	103908253	C	A	103908253	3	1	175	1	0	0	0	0	1	0	0	0	4328	623	22	3	705	3	DDI1	11	103908253	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	923931	103908253	31098263	141	22100											
IL18	3606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112014513	112014513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IL18	NM_001562	exon6	c.G388A	p.D130N	TTGTATCCTTGAT	.	81	44	60	0	.	90	T	112014513	C	T	112014513	3	4	175	1	0	0	0	0	1	0	0	0	7645	855	30	3	197	3	IL18	11	112014513	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	8106260	112014513	22992003	142	22101											
C11orf71	54494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114271008	114271008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001271562	exon1	c.A46T	p.R16W	CCACCCTGCTCCT	.	158	60	87	0	.	.	A	114271008	T	A	114271008	3	1	175	1	0	0	0	0	1	0	0	0	1660	1579	55	4	405	4	C11orf71	11	114271008	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	2256495	114271008	20735508	143	22102											
HYOU1	10525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118922612	118922612	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HYOU1	NM_006389	exon12	c.A1257T	p.A419A	GTACACTGCCCCC	.	104	33	64	0	.	90	A	118922612	T	A	118922612	2	1	175	1	0	0	0	0	0	0	0	1	7470	1567	55	4		4	HYOU1	11	118922612	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	4651604	118922612	16083904	144	22103											
MRPL51	51258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	6602118	6602118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MRPL51	NM_016497	exon2	c.A100G	p.I34V	GCCTTATACCGAT	.	78	33	66	0	.	90	C	6602118	T	C	6602118	3	2	175	1	0	0	0	0	1	0	0	0	9815	1406	49	2	294	2	MRPL51	12	6602118	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10		6602118	127249777	145	22104											
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48866816	48866816	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ANP32D	NM_012404	exon1	c.C369T	p.C123C	CACTTGCGAGGTA	.	81	28	77	0	.	227	T	48866816	C	T	48866816	2	4	175	1	0	0	0	0	0	0	0	1	708	776	27	1		1	ANP32D	12	48866816	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	42264698	48866816	84985079	146	22105											
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51864175	51864175	+	Splice_Site	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC4A8	NM_001258401	exon13	c.1366-1G>T	.	CTCTCAGAGTGCA	.	90	34	84	0	.	95	T	51864175	G	T	51864175	5	4	175	1	0	0	0	0	0	0	1	0	14659	956	33	3	1574	3	SLC4A8	12	51864175	Splice_Site	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2997359	51864175	81987720	147	22106											
KRT83	3889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52715018	52715019	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.A34E	GGGGGCGGCGGTG	.	103	26	44	0	.	.	CT	52715019	GG	CT	52715018	3	2	175	1	0	0	0	0	1	0	0	0	8497	1103	39	4	1415	4	KRT83	12	52715018	Missense_Mutation	DNP	GG	TCGA-MI-A75G-01A-11D-A32G-10	850843	52715018	81136877	148	22107											
PDE1B	5153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54963367	54963367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDE1B	NM_000924	exon5	c.T448C	p.Y150H	CCCACTTACTCTA	.	111	47	90	0	.	92	C	54963367	T	C	54963367	3	2	175	1	0	0	0	0	1	0	0	0	11634	1754	61	2	519	2	PDE1B	12	54963367	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	2248349	54963367	78888528	149	22108											
DCD	117159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55040905	55040905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DCD	NM_053283	exon2	c.C97A	p.P33T	ACTCACGGTTCCC	.	33	5	29	0	.	91	T	55040905	G	T	55040905	3	4	175	1	0	0	0	0	1	0	0	0	4283	1130	39	1	251	1	DCD	12	55040905	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	77538	55040905	78810990	150	22109											
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56486836	56486836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ERBB3	NM_001982	exon11	c.C1250T	p.T417I	TGACAACCATTGG	.	80	12	62	0	.	1403	T	56486836	C	T	56486836	3	4	175	1	0	0	0	0	1	0	0	0	5208	507	18	3	1423	3	ERBB3	12	56486836	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	1445931	56486836	77365059	151	22110	138	2									
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56486845	56486845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ERBB3	NM_001982	exon11	c.G1259T	p.G420V	TTGGAGGCAGAAG	.	77	12	56	0	.	1403	T	56486845	G	T	56486845	3	4	175	1	0	0	0	0	1	0	0	0	5208	1203	42	3	1432	3	ERBB3	12	56486845	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	9	56486845	77365050	152	22111	138	2									
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57552232	57552232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LRP1	NM_002332	exon11	c.A1609G	p.I537V	CCAGGCATCATCC	.	58	17	61	0	.	596	G	57552232	A	G	57552232	3	3	175	1	0	0	0	0	1	0	0	0	8951	217	8	2	1651	2	LRP1	12	57552232	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	1065387	57552232	76299663	153	22112											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57884114	57884114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MARS	NM_004990	exon6	c.G615T	p.Q205H	AAAGCAGCCCCAG	.	42	8	36	0	.	654	T	57884114	G	T	57884114	3	4	175	1	0	0	0	0	1	0	0	0	9316	962	34	3	637	3	MARS	12	57884114	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	331882	57884114	75967781	154	22113											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101750830	101750830	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	UTP20	NM_014503	exon43	c.A5661C	p.E1887D	AAAAGAATTACAG	.	77	11	64	0	.	155	C	101750830	A	C	101750830	3	2	175	1	0	0	0	0	1	0	0	0	17096	98	4	5	5831	5	UTP20	12	101750830	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	43866716	101750830	32101065	155	22114											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104136187	104136187	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	STAB2	NM_017564	exon56	c.C5886T	p.C1962C	AGCCTGCCCTGGA	.	67	27	53	0	.	104	T	104136187	C	T	104136187	2	4	175	1	0	0	0	0	0	0	0	1	15237	747	26	3		3	STAB2	12	104136187	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2385357	104136187	29715708	156	22115											
PTPN11	5781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112910827	112910827	+	Missense_Mutation	SNP	A	A	G	rs121918456		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PTPN11	NM_080601	exon7	c.A836G	p.Y279C	ATAGATATAAAAA	.	286	126	235	0	.	7239	G	112910827	A	G	112910827	3	3	175	1	0	0	0	0	1	0	0	0	12780	449	16	2	862	2	PTPN11	12	112910827	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	8774640	112910827	20941068	157	22116											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120594723	120594723	+	Missense_Mutation	SNP	C	C	T	rs201424442		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GCN1L1	NM_006836	exon27	c.G3161A	p.R1054H	TGTAAGCGAGGCG	.	32	10	34	0	.	94	T	120594723	C	T	120594723	3	4	175	1	0	0	0	0	1	0	0	0	6299	768	27	1	4982	1	GCN1L1	12	120594723	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	7683896	120594723	13257172	158	22117											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23905055	23905055	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SACS	NM_014363	exon10	c.T12960C	p.L4320L	TTCTGGAAGCTTC	.	60	27	85	0	.	298	G	23905055	A	G	23905055	2	3	175	1	0	0	0	0	0	0	0	1	13804	233	9	2		2	SACS	13	23905055	Silent	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		23905055	91264823	159	22118											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23905368	23905368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SACS	NM_014363	exon10	c.A12647G	p.D4216G	GAATTGTCAGCAT	.	34	14	52	0	.	298	C	23905368	T	C	23905368	3	2	175	1	0	0	0	0	1	0	0	0	13804	1667	58	2	1096	2	SACS	13	23905368	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	313	23905368	91264510	160	22119											
NEK3	4752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52718081	52718081	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NEK3	NM_002498	exon10	c.A846G	p.K282K	CGAATTTTTTATT	.	82	23	74	0	.	359	C	52718081	T	C	52718081	2	2	175	1	0	0	0	0	0	0	0	1	10325	1838	64	2		2	NEK3	13	52718081	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	28812713	52718081	62451797	161	22120											
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	67800963	67800963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCDH9	NM_203487	exon2	c.G1610A	p.R537Q	ATGAATCGTTCTT	.	77	30	85	0	.	96	T	67800963	C	T	67800963	3	4	175	1	0	0	0	0	1	0	0	0	11518	884	31	1	2119	1	PCDH9	13	67800963	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	15082882	67800963	47368915	162	22121											
TMCO3	55002	hgsc.bcm.edu;broad.mit.edu	37	13	114201642	114201642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMCO3	NM_017905	exon11	c.1718delC	p.A573fs	TTGTGGCGTACGA	.	70	12	45	0	.	90	-	114201642	C	-	114201642	7	5	175	1	0	1	0	1	0	0	0	0	15994	768	27	0	1756	0	TMCO3	13	114201642	Frame_Shift_Del	DEL	C	TCGA-MI-A75G-01A-11D-A32G-10	46400679	114201642	968236	163	22122	139	2									
TMCO3	55002	hgsc.bcm.edu;bcgsc.ca	37	13	114201644	114201644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMCO3	NM_017905	exon11	c.T1720A	p.Y574N	GTGGCGTACGAGC	.	71	13	47	0	.	90	A	114201644	T	A	114201644	3	1	175	1	0	0	0	0	1	0	0	0	15994	1638	57	4	1758	4	TMCO3	13	114201644	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	2	114201644	968234	164	22123	139	2									
OR4K17	390436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20585602	20585602	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR4K17	NM_001004715	exon1	c.A37T	p.S13C	GGTATGAGTGATC	.	99	50	69	0	.	71	T	20585602	A	T	20585602	3	4	175	1	0	0	0	0	1	0	0	0	11071	304	11	4	39	4	OR4K17	14	20585602	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		20585602	86763938	165	22124											
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	21770659	21770659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RPGRIP1	NM_020366	exon4	c.G503A	p.R168K	GGGACAGGCTGAG	.	42	13	33	0	.	140	A	21770659	G	A	21770659	3	1	175	1	0	0	0	0	1	0	0	0	13549	1000	35	3	517	3	RPGRIP1	14	21770659	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1185057	21770659	85578881	166	22125											
SALL2	6297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21991101	21991101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SALL2	NM_005407	exon2	c.C2761A	p.P921T	GGGAGGGAAAGGC	.	111	37	75	0	.	92	T	21991101	G	T	21991101	3	4	175	1	0	0	0	0	1	0	0	0	13811	1174	41	3	266	3	SALL2	14	21991101	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	220442	21991101	85358439	167	22126											
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24572377	24572377	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCK2	NM_004563	exon9	c.C1381T	p.L461L	GTACCCCTGGTAT	.	89	10	54	0	.	227	T	24572377	C	T	24572377	2	4	175	1	0	0	0	0	0	0	0	1	11582	680	24	3		3	PCK2	14	24572377	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2581276	24572377	82777163	168	22127											
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26949267	26949267	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NOVA1	NM_006489	exon3	c.A363C	p.R121R	CATTTCTCGAATT	.	85	30	83	0	.	229	G	26949267	T	G	26949267	2	3	175	1	0	0	0	0	0	0	0	1	10554	1538	54	5		5	NOVA1	14	26949267	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	2376890	26949267	80400273	169	22128											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96781503	96781503	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATG2B	NM_018036	exon23	c.C3630T	p.S1210S	ATGCCAGCTAAGC	.	146	19	116	0	.	93	A	96781503	G	A	96781503	2	1	175	1	0	0	0	0	0	0	0	1	1094	962	34	3		3	ATG2B	14	96781503	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	69832236	96781503	10568037	170	22129											
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104205095	104205095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PPP1R13B	NM_015316	exon14	c.G2785A	p.V929I	CGCAGACGGCGTT	.	112	23	103	0	.	227	T	104205095	C	T	104205095	3	4	175	1	0	0	0	0	1	0	0	0	12357	536	19	1	503	1	PPP1R13B	14	104205095	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	7423592	104205095	3144445	171	22130											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105417167	105417167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	AHNAK2	NM_138420	exon7	c.C4621A	p.L1541M	TGCTCAGGTCAGT	.	151	13	145	0	.	47	T	105417167	G	T	105417167	3	4	175	1	0	0	0	0	1	0	0	0	415	991	35	3	12770	3	AHNAK2	14	105417167	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1212072	105417167	1932373	172	22131											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23890418	23890418	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_019066	exon1	c.C2472T	p.P824P	GGCAAAGGGATCC	.	86	23	74	0	.	.	A	23890418	G	A	23890418	2	1	175	1	0	0	0	0	0	0	0	1	9189	987	35	3		3	MAGEL2	15	23890418	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		23890418	78640974	173	22132											
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27271951	27271951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001270873	exon3	c.G253T	p.V85L	GGTCCTGTGTCAT	.	150	50	143	0	.	.	T	27271951	G	T	27271951	3	4	175	1	0	0	0	0	1	0	0	0	6173	1377	48	3	263	3	GABRG3	15	27271951	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	3381533	27271951	75259441	174	22133											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28422626	28422626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HERC2	NM_004667	exon60	c.G9193T	p.D3065Y	TTCCATCGACAGT	.	109	30	60	0	.	234	A	28422626	C	A	28422626	3	1	175	1	0	0	0	0	1	0	0	0	7058	884	31	1	5447	1	HERC2	15	28422626	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	1150675	28422626	74108766	175	22134											
RAD51	5888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40998470	40998470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RAD51	NM_001164270	exon4	c.A321T	p.K107N	CTCCAAAGAGCTT	.	337	108	234	0	.	563	T	40998470	A	T	40998470	3	4	175	1	0	0	0	0	1	0	0	0	12985	69	3	4	456	4	RAD51	15	40998470	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	12575844	40998470	61532922	176	22135											
EPB42	2038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43502619	43502619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EPB42	NM_000119	exon5	c.G658T	p.D220Y	TGAGGTCAATGAC	.	40	7	33	0	.	92	A	43502619	C	A	43502619	3	1	175	1	0	0	0	0	1	0	0	0	5158	826	29	3	1543	3	EPB42	15	43502619	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2504149	43502619	59028773	177	22136											
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55651833	55651833	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCPG1	NM_020739	exon8	c.A2138T	p.E713V	TCATATTCCTTCA	.	111	11	63	0	.	91	A	55651833	T	A	55651833	3	1	175	1	0	0	0	0	1	0	0	0	2938	1783	62	4	139	4	CCPG1	15	55651833	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	12149214	55651833	46879559	178	22137											
SLC24A1	9187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65917213	65917213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_004727	exon2	c.A795T	p.E265D	GGTAGAAGCAAAC	.	178	53	92	0	.	.	T	65917213	A	T	65917213	3	4	175	1	0	0	0	0	1	0	0	0	14465	69	3	4		4	SLC24A1	15	65917213	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	10265380	65917213	36614179	179	22138											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66031083	66031083	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DENND4A	NM_001144823	exon6	c.A762G	p.V254V	AGAAAATACAGGC	.	192	54	120	0	.	229	C	66031083	T	C	66031083	2	2	175	1	0	0	0	0	0	0	0	1	4433	1393	49	2		2	DENND4A	15	66031083	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	113870	66031083	36500309	180	22139											
DIS3L	115752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	66621720	66621720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DIS3L	NM_001143688	exon14	c.A2518G	p.I840V	AGACATATCAACA	.	160	18	98	0	.	92	G	66621720	A	G	66621720	3	3	175	1	0	0	0	0	1	0	0	0	4536	449	16	2	2572	2	DIS3L	15	66621720	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	590637	66621720	35909672	181	22140											
THAP10	56906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	71175115	71175115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	THAP10	NM_020147	exon2	c.562delC	p.R188fs	GGTGACGGGGCCT	.	241	74	177	0	.	92	-	71175115	G	-	71175115	7	5	175	1	0	1	0	1	0	0	0	0	15839	1116	39	0	219	0	THAP10	15	71175115	Frame_Shift_Del	DEL	G	TCGA-MI-A75G-01A-11D-A32G-10	4553395	71175115	31356277	182	22141											
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91450650	91450650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MAN2A2	NM_006122	exon7	c.G1121T	p.R374L	TCAAACGCCTGCC	.	95	38	74	0	.	136	T	91450650	G	T	91450650	3	4	175	1	0	0	0	0	1	0	0	0	9215	1087	38	1	1147	1	MAN2A2	15	91450650	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	20275535	91450650	11080742	183	22142											
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	96875737	96875737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NR2F2	NM_021005	exon1	c.C403A	p.R135S	TACTGCCGCCTCA	.	157	40	97	0	.	228	A	96875737	C	A	96875737	3	1	175	1	0	0	0	0	1	0	0	0	10628	652	23	1	452	1	NR2F2	15	96875737	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	5425087	96875737	5655655	184	22143											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3860606	3860606	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CREBBP	NM_001079846	exon3	c.A973T	p.M325L	TTACCATATTTGG	.	92	38	74	0	.	1807	A	3860606	T	A	3860606	3	1	175	1	0	0	0	0	1	0	0	0	3861	1406	49	4	6471	4	CREBBP	16	3860606	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10		3860606	86494147	185	22144											
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	24583179	24583180	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RBBP6	NM_006910	exon18	c.4792_4793insT	p.V1598fs	ACACAGGTTGAAA	.	147	30	123	0	.	230	T	24583180	-	T	24583179	7	5	175	1	0	1	1	0	0	0	0	0	13103	1261	44	0	4916	0	RBBP6	16	24583179	Frame_Shift_Ins	INS	-	TCGA-MI-A75G-01A-11D-A32G-10	20722573	24583179	65771574	186	22145											
IL4R	3566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27374563	27374563	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IL4R	NM_000418	exon11	c.G1890T	p.G630G	AGAGGGGTATAAG	.	23	5	24	1	.	227	T	27374563	G	T	27374563	2	4	175	1	0	0	0	0	0	0	0	1	7698	1248	44	3		3	IL4R	16	27374563	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2791384	27374563	62980190	187	22146											
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	53296958	53296958	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CHD9	NM_025134	exon20	c.G4269A	p.W1423X	CTTCTGGCAAAAA	.	63	17	55	0	.	272	A	53296958	G	A	53296958	4	1	175	1	0	0	0	0	0	1	0	0	3332	1212	42	3	4343	3	CHD9	16	53296958	Nonsense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	25922395	53296958	37057795	188	22147											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58585618	58585629	+	In_Frame_Del	DEL	CCTGGGCCTGAG	CCTGGGCCTGAG	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	CCTGGGCCTGAG	CCTGGGCCTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CNOT1	NM_206999	exon23	c.3065_3076del	p.1022_1026del	CTGGAACCTGGGC	.	59	19	52	0	.	95	-	58585629	CCTGGGCCTGAG	-	58585618	7	5	175	1	0	1	0	1	0	0	0	0	3617	507	18	0	4384	0	CNOT1	16	58585618	In_Frame_Del	DEL	CCTGGGCCTGAG	TCGA-MI-A75G-01A-11D-A32G-10	5288660	58585618	31769135	189	22148											
ZFHX3	463	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72984387	72984387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZFHX3	NM_006885	exon3	c.C3197G	p.A1066G	AGGCTGGCCTCGT	.	76	31	60	1	.	72	C	72984387	G	C	72984387	3	2	175	1	0	0	0	0	1	0	0	0	17631	1203	42	4	7946	4	ZFHX3	16	72984387	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	14398769	72984387	17370366	190	22149											
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	77323232	77323232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADAMTS18	NM_199355	exon22	c.G3479A	p.C1160Y	AGCAGACAACTTG	.	56	19	38	0	.	1036	T	77323232	C	T	77323232	3	4	175	1	0	0	0	0	1	0	0	0	263	478	17	3	194	3	ADAMTS18	16	77323232	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	4338845	77323232	13031521	191	22150											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	102	83	110	0	.	70225	C	7578271	T	C	7578271	3	2	175	1	0	0	0	0	1	0	0	0	16378	1464	51	2	716	2	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10		7578271	73616939	192	22151											
LGALS9	3965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	25972916	25972916	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LGALS9	NM_009587	exon7	c.C606T	p.S202S	GCAGAGCGCCCCT	.	300	148	184	0	.	226	T	25972916	C	T	25972916	2	4	175	1	0	0	0	0	0	0	0	1	8748	767	27	1		1	LGALS9	17	25972916	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	18394645	25972916	55222294	193	22152											
CCL8	6355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32647344	32647344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCL8	NM_005623	exon2	c.A133G	p.I45V	ATTCCTATCCAGA	.	38	29	54	0	.	90	G	32647344	A	G	32647344	3	3	175	1	0	0	0	0	1	0	0	0	2907	449	16	2	139	2	CCL8	17	32647344	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	6674428	32647344	48547866	194	22153											
DCAKD	79877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43101864	43101864	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DCAKD	NM_001128631	exon5	c.A633G	p.T211T	GAGCCCTGTGAGG	.	35	29	56	0	.	90	C	43101864	T	C	43101864	2	2	175	1	0	0	0	0	0	0	0	1	4279	1567	55	2		2	DCAKD	17	43101864	Silent	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	10454520	43101864	38093346	195	22154											
ABCC3	8714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48734480	48734480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ABCC3	NM_003786	exon4	c.G422T	p.W141L	TCTTCTGGTTCCT	.	107	13	56	1	.	93	T	48734480	G	T	48734480	3	4	175	1	0	0	0	0	1	0	0	0	54	1357	47	3	436	3	ABCC3	17	48734480	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	5632616	48734480	32460730	196	22155	140	2									
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48734481	48734481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ABCC3	NM_003786	exon4	c.G423T	p.W141C	CTTCTGGTTCCTG	.	107	13	56	0	.	93	T	48734481	G	T	48734481	3	4	175	1	0	0	0	0	1	0	0	0	54	1270	44	3	437	3	ABCC3	17	48734481	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1	48734481	32460729	197	22156	140	2									
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65144766	65144766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HELZ	NM_014877	exon20	c.G2540A	p.R847Q	TAGAGTCGGTCAA	.	84	55	35	0	.	92	T	65144766	C	T	65144766	3	4	175	1	0	0	0	0	1	0	0	0	7049	884	31	1	3344	1	HELZ	17	65144766	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	16410285	65144766	16050444	198	22157											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73738729	73738730	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.I950K	TCTTTATCCGGCC	.	144	24	85	0	.	.	AG	73738730	TC	AG	73738729	3	1	175	1	0	0	0	0	1	0	0	0	7897	1435	50	4	2943	4	ITGB4	17	73738729	Missense_Mutation	DNP	TC	TCGA-MI-A75G-01A-11D-A32G-10	8593963	73738729	7456481	199	22158											
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76046694	76046694	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TNRC6C	NM_018996	exon4	c.G1551A	p.V517V	CGCTGTGCCAGCA	.	52	28	32	0	.	24	A	76046694	G	A	76046694	2	1	175	1	0	0	0	0	0	0	0	1	16339	1306	46	3		3	TNRC6C	17	76046694	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2307965	76046694	5148516	200	22159											
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	334785	334785	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	COLEC12	NM_130386	exon6	c.C1773T	p.P591P	GGCCAGGGGCACC	.	97	19	87	0	.	92	A	334785	G	A	334785	2	1	175	1	0	0	0	0	0	0	0	1	3712	1219	43	3		3	COLEC12	18	334785	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		334785	77742463	201	22160											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7888209	7888209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PTPRM	NM_001105244	exon3	c.A302T	p.Y101F	TTCACTATTTTGT	.	86	20	97	0	.	228	T	7888209	A	T	7888209	3	4	175	1	0	0	0	0	1	0	0	0	12806	449	16	4	312	4	PTPRM	18	7888209	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	7553424	7888209	70189039	202	22161											
SYT4	6860	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	40854347	40854347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SYT4	NM_020783	exon2	c.C47T	p.T16I	ACCACTGTGGGGA	.	21	5	14	0	.	132	A	40854347	G	A	40854347	3	1	175	1	0	0	0	0	1	0	0	0	15473	1377	48	3	1242	3	SYT4	18	40854347	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	32966138	40854347	37222901	203	22162											
PPAP2C	8612	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	291305	291305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PPAP2C	NM_003712	exon1	c.A32G	p.D11G	AGCACGTCGAGCA	.	94	15	53	1	.	90	C	291305	T	C	291305	3	2	175	1	0	0	0	0	1	0	0	0	12292	1667	58	2	977	2	PPAP2C	19	291305	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10		291305	58837678	204	22163											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9071326	9071326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC16	NM_024690	exon3	c.G16120T	p.V5374L	TTGTCACCAGAAC	.	105	21	66	0	.	566	A	9071326	C	A	9071326	3	1	175	1	0	0	0	0	1	0	0	0	9973	507	18	3	27731	3	MUC16	19	9071326	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	8780021	9071326	50057657	205	22164	141	2									
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9071328	9071328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC16	NM_024690	exon3	c.T16118G	p.L5373R	GTCACCAGAACAG	.	107	21	69	0	.	566	C	9071328	A	C	9071328	3	2	175	1	0	0	0	0	1	0	0	0	9973	188	7	5	27733	5	MUC16	19	9071328	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	2	9071328	50057655	206	22165	141	2									
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11137010	11137010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SMARCA4	NM_003072	exon23	c.G3203T	p.G1068V	CTGGCGGCATTGT	.	102	11	87	0	.	1523	T	11137010	G	T	11137010	3	4	175	1	0	0	0	0	1	0	0	0	14770	1203	42	3	3289	3	SMARCA4	19	11137010	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2065682	11137010	47991973	207	22166											
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12384142	12384142	+	Missense_Mutation	SNP	T	T	C	rs61737488	byfrequency	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF44	NM_001164276	exon5	c.A1072G	p.T358A	TACATGTATAGGG	.	99	7	65	0	T|0.105;C|0.895	23	C	12384142	T	C	12384142	3	2	175	1	0	0	0	0	1	0	0	0	17909	1638	57	2	923	2	ZNF44	19	12384142	Missense_Mutation	SNP	T	TCGA-MI-A75G-01A-11D-A32G-10	1247132	12384142	46744841	208	22167											
SAMD1	90378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14199510	14199510	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_138352	exon4	c.G1113A	p.P371P	CTGCTCCGGGAAT	.	94	21	68	0	.	.	T	14199510	C	T	14199510	2	4	175	1	0	0	0	0	0	0	0	1	13814	639	23	1		1	SAMD1	19	14199510	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	1815368	14199510	44929473	209	22168											
PDE4C	5143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18321780	18321780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDE4C	NM_000923	exon16	c.C2098G	p.P700A	GGTCTGGGCCGGC	.	89	34	77	0	.	94	C	18321780	G	C	18321780	3	2	175	1	0	0	0	0	1	0	0	0	11641	1232	43	4	44	4	PDE4C	19	18321780	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	4122270	18321780	40807203	210	22169											
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu	37	19	19612809	19612809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GATAD2A	NM_017660	exon10	c.G1532T	p.R511L	CGTTCCGCTCAGG	.	36	5	27	0	.	90	T	19612809	G	T	19612809	3	4	175	1	0	0	0	0	1	0	0	0	6260	1087	38	1	1566	1	GATAD2A	19	19612809	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1291029	19612809	39516174	211	22170											
ZNF257	113835	hgsc.bcm.edu;broad.mit.edu	37	19	22271140	22271141	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF257	NM_033468	exon4	c.588_589del	p.196_197del	TCATATTAGAGAG	.	40	14	23	0	.	90	-	22271141	TA	-	22271140	7	5	175	1	0	1	0	1	0	0	0	0	17797	1742	61	0	602	0	ZNF257	19	22271140	Frame_Shift_Del	DEL	TA	TCGA-MI-A75G-01A-11D-A32G-10	2658331	22271140	36857843	212	22171											
MAG	4099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35800910	35800919	+	Frame_Shift_Del	DEL	GAGCGAGCGG	GAGCGAGCGG	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	GAGCGAGCGG	GAGCGAGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MAG	NM_080600	exon8	c.1365_1374del	p.455_458del	GAACGAGAGCGAG	.	55	23	52	0	.	947	-	35800919	GAGCGAGCGG	-	35800910	7	5	175	1	0	1	0	1	0	0	0	0	9162	933	33	0	1387	0	MAG	19	35800910	Frame_Shift_Del	DEL	GAGCGAGCGG	TCGA-MI-A75G-01A-11D-A32G-10	13529770	35800910	23328073	213	22172											
KRTDAP	388533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35978347	35978347	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KRTDAP	NM_207392	exon6	c.283delA	p.T95fs	CAGGAGTTGCGCT	.	84	19	50	0	.	90	-	35978347	T	-	35978347	7	5	175	1	0	1	0	1	0	0	0	0	8580	1725	60	0	20	0	KRTDAP	19	35978347	Frame_Shift_Del	DEL	T	TCGA-MI-A75G-01A-11D-A32G-10	177437	35978347	23150636	214	22173											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40364247	40364247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FCGBP	NM_003890	exon31	c.C14395T	p.R4799C	AGTAGCGGCCATC	.	89	21	38	0	.	98	A	40364247	G	A	40364247	3	1	175	1	0	0	0	0	1	0	0	0	5778	1116	39	1	1846	1	FCGBP	19	40364247	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	4385900	40364247	18764736	215	22174											
PSG3	5671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43237165	43237165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PSG3	NM_021016	exon3	c.G480T	p.E160D	CATGTCCTCCCTG	.	62	22	47	0	.	92	A	43237165	C	A	43237165	3	1	175	1	0	0	0	0	1	0	0	0	12656	680	24	3	822	3	PSG3	19	43237165	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2872918	43237165	15891818	216	22175											
FUT1	2523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	49253497	49253497	+	Nonsense_Mutation	SNP	C	C	A	rs56131151	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FUT1	NM_000148	exon4	c.G1042T	p.E348X	CCCACTCGGGCAG	.	47	18	21	0	.	227	A	49253497	C	A	49253497	4	1	175	1	0	0	0	0	0	1	0	0	6101	893	31	1	59	1	FUT1	19	49253497	Nonsense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	6016332	49253497	9875486	217	22176											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49686109	49686109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TRPM4	NM_001195227	exon11	c.A1538T	p.K513M	TGGGGAAGATGTG	.	69	15	55	0	.	91	T	49686109	A	T	49686109	3	4	175	1	0	0	0	0	1	0	0	0	16585	72	3	4	1580	4	TRPM4	19	49686109	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	432612	49686109	9442874	218	22177											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50119469	50119469	+	Silent	SNP	C	C	T	rs200097233		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRR12	NM_020719	exon9	c.C5490T	p.S1830S	CCCCAGCGAGGAC	.	58	22	26	0	C|0.999;T|0.001	70	T	50119469	C	T	50119469	2	4	175	1	0	0	0	0	0	0	0	1	12584	767	27	1		1	PRR12	19	50119469	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	433360	50119469	9009514	219	22178											
ATF5	22809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50436140	50436141	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATF5	NM_012068	exon4	c.640_641del	p.214_214del	CAAAAGAAGAGAG	.	111	66	75	0	.	92	-	50436141	AA	-	50436140	7	5	175	1	0	1	0	1	0	0	0	0	1083	247	9	0	646	0	ATF5	19	50436140	Frame_Shift_Del	DEL	AA	TCGA-MI-A75G-01A-11D-A32G-10	316671	50436140	8692843	220	22179											
ZNF468	90333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53344538	53344538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF468	NM_001008801	exon4	c.G1009A	p.A337T	TATATGCGAAAGC	.	61	23	42	0	.	92	T	53344538	C	T	53344538	3	4	175	1	0	0	0	0	1	0	0	0	17925	768	27	1	563	1	ZNF468	19	53344538	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2908398	53344538	5784445	221	22180											
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53848860	53848860	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_138374	exon3	c.G117A	p.E39E	GCTGGAGAATTAT	.	59	29	31	0	.	.	A	53848860	G	A	53848860	2	1	175	1	0	0	0	0	0	0	0	1	18188	933	33	3		3	ZNF845	19	53848860	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	504322	53848860	5280123	222	22181											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56223244	56223244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NLRP9	NM_176820	exon8	c.G2765C	p.W922S	GCAATCCAGTCGA	.	154	53	88	0	.	294	G	56223244	C	G	56223244	3	3	175	1	0	0	0	0	1	0	0	0	10484	595	21	4	218	4	NLRP9	19	56223244	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	2374384	56223244	2905739	223	22182											
ZNF586	54807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	58290644	58290644	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF586	NM_001077426	exon2	c.G562T	p.E188X	ACACTGGAGAGAG	.	52	12	37	0	.	92	T	58290644	G	T	58290644	4	4	175	1	0	0	0	0	0	1	0	0	18016	1174	41	3	699	3	ZNF586	19	58290644	Nonsense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	2067400	58290644	838339	224	22183											
A1BG	1	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58861838	58861840	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	A1BG	NM_130786	exon6	c.1088_1090del	p.363_364del	CGGAAATGTTGTG	.	196	0	74	0	.	90	-	58861840	TGT	-	58861838	7	5	175	1	0	1	0	1	0	0	0	0	1	1464	51	0	409	0	A1BG	19	58861838	In_Frame_Del	DEL	TGT	TCGA-MI-A75G-01A-11D-A32G-10	571194	58861838	267145	225	22184											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9319611	9319611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLCB4	NM_182797	exon5	c.G296C	p.C99S	TAGTTTGTGTCTG	.	88	27	57	0	.	274	C	9319611	G	C	9319611	3	2	175	1	0	0	0	0	1	0	0	0	12030	1377	48	4	310	4	PLCB4	20	9319611	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		9319611	53705909	226	22185											
ZNF337	26152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25656381	25656381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF337	NM_015655	exon5	c.C1543A	p.R515S	AAAAACGTTTCTC	.	97	30	72	0	.	90	T	25656381	G	T	25656381	3	4	175	1	0	0	0	0	1	0	0	0	17850	1145	40	1	716	1	ZNF337	20	25656381	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	16336770	25656381	37369139	227	22186	142	2									
ZNF337	26152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25656385	25656385	+	Missense_Mutation	SNP	C	C	G	rs190880125	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF337	NM_015655	exon5	c.G1539C	p.E513D	ACGTTTCTCACCC	.	95	30	71	0	C|0.999;T|0.001	90	G	25656385	C	G	25656385	3	3	175	1	0	0	0	0	1	0	0	0	17850	912	32	4	720	4	ZNF337	20	25656385	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	4	25656385	37369135	228	22187	142	2									
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37191272	37191272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RALGAPB	NM_020336	exon24	c.G3629A	p.G1210D	ACCCTGGTTGGAC	.	217	29	124	0	.	92	A	37191272	G	A	37191272	3	1	175	1	0	0	0	0	1	0	0	0	13015	1261	44	3	3719	3	RALGAPB	20	37191272	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	11534887	37191272	25834248	229	22188											
MMP9	4318	hgsc.bcm.edu;bcgsc.ca	37	20	44642129	44642129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MMP9	NM_004994	exon9	c.C1566A	p.D522E	CTTCGACGCCATC	.	119	8	61	0	.	652	A	44642129	C	A	44642129	3	1	175	1	0	0	0	0	1	0	0	0	9669	535	19	1	1600	1	MMP9	20	44642129	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	7450857	44642129	18383391	230	22189											
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49221275	49221275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM65C	NM_080829	exon12	c.C981G	p.S327R	CGTGGGGCTGGGT	.	86	12	34	0	.	92	C	49221275	G	C	49221275	3	2	175	1	0	0	0	0	1	0	0	0	5601	1194	42	4	1903	4	FAM65C	20	49221275	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	4579146	49221275	13804245	231	22190											
GNAS	2778	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	57428390	57428390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GNAS	NM_080425	exon1	c.G70A	p.E24K	ATCGGGGAACAGC	.	126	11	68	0	.	4767	A	57428390	G	A	57428390	3	1	175	1	0	0	0	0	1	0	0	0	6510	1175	41	3	814	3	GNAS	20	57428390	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	8207115	57428390	5597130	232	22191											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57766370	57766370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF831	NM_178457	exon1	c.G296T	p.G99V	CTGAAGGGCCTGG	.	55	11	26	0	.	126	T	57766370	G	T	57766370	3	4	175	1	0	0	0	0	1	0	0	0	18182	1232	43	3	298	3	ZNF831	20	57766370	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	337980	57766370	5259150	233	22192											
OSBPL2	9885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60835074	60835074	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OSBPL2	NM_144498	exon3	c.G75A	p.E25E	TTCAGAGGCAAAT	.	103	9	42	0	.	69	A	60835074	G	A	60835074	2	1	175	1	0	0	0	0	0	0	0	1	11278	1014	35	3		3	OSBPL2	20	60835074	Silent	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	3068704	60835074	2190446	234	22193											
SLCO4A1	28231	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	61287812	61287812	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLCO4A1	NM_016354	exon2	c.C6G	p.P2P	GATGCCCCTGCAT	.	20	5	16	0	.	91	G	61287812	C	G	61287812	2	3	175	1	0	0	0	0	0	0	0	1	14729	610	22	4		4	SLCO4A1	20	61287812	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	452738	61287812	1737708	235	22194											
C21orf59	56683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33975557	33975557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C21orf59	NM_021254	exon5	c.G580T	p.A194S	TGGCTGCCCACCA	.	101	26	74	0	.	90	A	33975557	C	A	33975557	3	1	175	1	0	0	0	0	1	0	0	0	2130	739	26	3	304	3	C21orf59	21	33975557	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10		33975557	14154338	236	22195											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43248679	43248679	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRDM15	NM_022115	exon19	c.G2475T	p.T825T	TTGGAACGTCTTG	.	58	9	38	0	.	90	A	43248679	C	A	43248679	2	1	175	1	0	0	0	0	0	0	0	1	12456	523	19	1		1	PRDM15	21	43248679	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	9273122	43248679	4881216	237	22196											
ADARB1	104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46604970	46604970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADARB1	NM_015834	exon9	c.G1649A	p.R550Q	GGGAGCGGCTGCT	.	60	20	42	0	.	91	A	46604970	G	A	46604970	3	1	175	1	0	0	0	0	1	0	0	0	282	1116	39	1	1675	1	ADARB1	21	46604970	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	3356291	46604970	1524925	238	22197											
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	21	47423312	47423312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	COL6A1	NM_001848	exon35	c.C2472G	p.F824L	CACGTTCTCCTCC	.	19	6	8	0	.	91	G	47423312	C	G	47423312	3	3	175	1	0	0	0	0	1	0	0	0	3699	912	32	4	2610	4	COL6A1	21	47423312	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	818342	47423312	706583	239	22198											
DGCR14	8220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19132075	19132075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DGCR14	NM_022719	exon1	c.G79A	p.E27K	CAGCCTCTCCCGC	.	74	35	57	0	.	116	T	19132075	C	T	19132075	3	4	175	1	0	0	0	0	1	0	0	0	4460	922	32	3	1391	3	DGCR14	22	19132075	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10		19132075	32172491	240	22199											
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	43608519	43608519	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SCUBE1	NM_173050	exon17	c.G2133A	p.E711E	CCCGGGCTCAGGC	.	64	8	59	0	.	93	T	43608519	C	T	43608519	2	4	175	1	0	0	0	0	0	0	0	1	13944	796	28	3		3	SCUBE1	22	43608519	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	24476444	43608519	7696047	241	22200											
PLXNB2	23654	broad.mit.edu;bcgsc.ca	37	22	50721222	50721234	+	Frame_Shift_Del	DEL	GGGACCCCCCGTA	GGGACCCCCCGTA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	GGGACCCCCCGTA	GGGACCCCCCGTA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLXNB2	NM_012401	exon18	c.2893_2905del	p.965_969del	GCACGGGGGACCC	.	35	7	48	0	.	211	-	50721234	GGGACCCCCCGTA	-	50721222	7	5	175	1	0	1	0	1	0	0	0	0	12124	1232	43	0	2691	0	PLXNB2	22	50721222	Frame_Shift_Del	DEL	GGGACCCCCCGTA	TCGA-MI-A75G-01A-11D-A32G-10	7112703	50721222	583344	242	22201											
NCAPH2	29781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50961497	50961497	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NCAPH2	NM_001185011	exon19	c.C1582A	p.R528R	GTCTCACGGTTCC	.	45	13	29	0	.	92	A	50961497	C	A	50961497	2	1	175	1	0	0	0	0	0	0	0	1	10210	527	19	1		1	NCAPH2	22	50961497	Silent	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	240275	50961497	343069	243	22202											
CRLF2	64109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1327776	1327776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CRLF2	NM_022148	exon2	c.C105G	p.I35M	GAAGTAGATGATC	.	460	65	385	0	.	299	C	1327776	G	C	1327776	3	2	175	1	0	0	0	0	1	0	0	0	3887	932	33	4	688	4	CRLF2	23	1327776	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10		1327776	153942784	244	22203											
PDHA1	5160	broad.mit.edu;bcgsc.ca	37	X	19367484	19367484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDHA1	NM_001173454	exon3	c.A226G	p.I76V	TTTGAAATTAAGG	.	82	5	75	0	.	227	G	19367484	A	G	19367484	3	3	175	1	0	0	0	0	1	0	0	0	11664	101	4	2	236	2	PDHA1	23	19367484	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10	18039708	19367484	135903076	245	22204											
RGN	9104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46949222	46949222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RGN	NM_004683	exon4	c.G394T	p.G132W	CACCAGGGGGCCC	.	55	7	43	0	.	130	T	46949222	G	T	46949222	3	4	175	1	0	0	0	0	1	0	0	0	13282	1232	43	3	404	3	RGN	23	46949222	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	27581738	46949222	108321338	246	22205											
FAM104B	90736	broad.mit.edu;bcgsc.ca	37	X	55187569	55187569	+	Splice_Site	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM104B	NM_138362	exon2	c.20+1G>A	.	AACTTACCGTACA	.	58	5	47	0	.	130	T	55187569	C	T	55187569	5	4	175	1	0	0	0	0	0	0	1	0	5386	521	18	3	482	3	FAM104B	23	55187569	Splice_Site	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	8238347	55187569	100082991	247	22206											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu	37	X	79937564	79937576	+	Frame_Shift_Del	DEL	AACTTCATTTGTT	AACTTCATTTGTT	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AACTTCATTTGTT	AACTTCATTTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BRWD3	NM_153252	exon39	c.4415_4427del	p.1472_1476del	GGCTGCAACTTCA	.	83	13	40	0	.	134	-	79937576	AACTTCATTTGTT	-	79937564	7	5	175	1	0	1	0	1	0	0	0	0	1526	131	5	0	993	0	BRWD3	23	79937564	Frame_Shift_Del	DEL	AACTTCATTTGTT	TCGA-MI-A75G-01A-11D-A32G-10	24749995	79937564	75332996	248	22207											
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100668006	100668006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HNRNPH2	NM_001032393	exon2	c.G1030T	p.A344S	GTGGCAGCTATGG	.	111	45	75	0	.	130	T	100668006	G	T	100668006	3	4	175	1	0	0	0	0	1	0	0	0	7267	971	34	3	1032	3	HNRNPH2	23	100668006	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	20730442	100668006	54602554	249	22208											
ZNF280C	55609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129350034	129350035	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF280C	NM_017666	exon14	c.1569_1570insT	p.L523fs	AGTTGGTAATTTT	.	61	28	37	0	.	132	A	129350035	-	A	129350034	7	5	175	1	0	1	1	0	0	0	0	0	17813	1635	57	0	668	0	ZNF280C	23	129350034	Frame_Shift_Ins	INS	-	TCGA-MI-A75G-01A-11D-A32G-10	28682028	129350034	25920526	250	22209											
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148798282	148798282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MAGEA11	NM_005366	exon5	c.C1136T	p.P379L	CTGATCCTGCATG	.	123	68	47	0	.	132	T	148798282	C	T	148798282	3	4	175	1	0	0	0	0	1	0	0	0	9165	681	24	3	1163	3	MAGEA11	23	148798282	Missense_Mutation	SNP	C	TCGA-MI-A75G-01A-11D-A32G-10	19448248	148798282	6472278	251	22210											
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	149818234	149818234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MTM1	NM_000252	exon10	c.G913A	p.E305K	AACGCCGAACTTT	.	149	10	62	0	.	228	A	149818234	G	A	149818234	3	1	175	1	0	0	0	0	1	0	0	0	9937	1059	37	1	947	1	MTM1	23	149818234	Missense_Mutation	SNP	G	TCGA-MI-A75G-01A-11D-A32G-10	1019952	149818234	5452326	252	22211											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4967403	4967403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_032972	exon2	c.A1784G	p.Q595R	TTGATCAGAATGA	.	112	18	89	0	.	.	G	4967403	A	G	4967403	3	3	175	1	0	0	0	0	1	0	0	0	11509	188	7	2	1826	2	PCDH11Y	24	4967403	Missense_Mutation	SNP	A	TCGA-MI-A75G-01A-11D-A32G-10		4967403	54406163	253	22212											
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29609329	29609329	+	Silent	SNP	G	G	C	rs142462225	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PTPRU	NM_133177	exon12	c.G2010C	p.A670A	ACTGGCGGCCAGC	.	60	21	63	0	G|1.000;A|0.000	291	C	29609329	G	C	29609329	2	2	176	1	0	0	0	0	0	0	0	1	12813	1103	39	4		4	PTPRU	1	29609329	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10		29609329	219641292	1	22213											
STK40	83931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36809505	36809505	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STK40	NM_032017	exon10	c.C960T	p.A320A	GGCGGCGGCCAGG	.	86	33	95	0	.	83	A	36809505	G	A	36809505	2	1	176	1	0	0	0	0	0	0	0	1	15306	1103	39	1		1	STK40	1	36809505	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	7200176	36809505	212441116	2	22214											
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40735691	40735691	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZMPSTE24	NM_005857	exon5	c.G519T	p.V173V	TGTTGTGACTCAG	.	208	60	208	0	.	226	T	40735691	G	T	40735691	2	4	176	1	0	0	0	0	0	0	0	1	17695	1277	45	3		3	ZMPSTE24	1	40735691	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	3926186	40735691	208514930	3	22215											
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85403450	85403450	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MCOLN2	NM_153259	exon11	c.A1323C	p.P441P	ATGGTATGGTCCT	.	77	26	82	0	.	94	G	85403450	T	G	85403450	2	3	176	1	0	0	0	0	0	0	0	1	9396	1451	51	5		5	MCOLN2	1	85403450	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	44667759	85403450	163847171	4	22216											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103428289	103428289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	COL11A1	NM_080629	exon39	c.G2980A	p.G994R	GTTCCCCTATTGG	.	186	57	195	0	.	586	T	103428289	C	T	103428289	3	4	176	1	0	0	0	0	1	0	0	0	3667	681	24	3	2592	3	COL11A1	1	103428289	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	18024839	103428289	145822332	5	22217											
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113231596	113231596	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MOV10	NM_020963	exon3	c.T177C	p.Y59Y	GCTGTATGGAATG	.	104	32	105	0	.	95	C	113231596	T	C	113231596	2	2	176	1	0	0	0	0	0	0	0	1	9718	1471	51	2		2	MOV10	1	113231596	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	9803307	113231596	136019025	6	22218											
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	1	145109584	145109584	+	RNA	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	TAAGACGTTGGCT	.	486	38	357	0	.	.	A	145109584	G	A	145109584	1	1	176	0	1	0	0	0	0	0	0	0	13989	1132	40	1		1	SEC22B	1	145109584	RNA	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	31877988	145109584	104141037	7	22219											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150531864	150531864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ADAMTSL4	NM_019032	exon17	c.C2865G	p.H955Q	TTCTCACCTCCCC	.	97	18	75	0	.	92	G	150531864	C	G	150531864	3	3	176	1	0	0	0	0	1	0	0	0	277	506	18	4	2998	4	ADAMTSL4	1	150531864	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	5422280	150531864	98718757	8	22220											
SCNM1	79005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151139457	151139457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SCNM1	NM_024041	exon3	c.C170T	p.A57V	CCCTGGCCATGCT	.	80	20	67	0	.	94	T	151139457	C	T	151139457	3	4	176	1	0	0	0	0	1	0	0	0	13926	739	26	3	180	3	SCNM1	1	151139457	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	607593	151139457	98111164	9	22221											
LCE5A	254910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152484038	152484038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LCE5A	NM_178438	exon2	c.T28C	p.C10R	CAGCAGTGCCAGC	.	106	35	90	0	.	91	C	152484038	T	C	152484038	3	2	176	1	0	0	0	0	1	0	0	0	8675	1696	59	2	30	2	LCE5A	1	152484038	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	1344581	152484038	96766583	10	22222											
APCS	325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159558103	159558103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	APCS	NM_001639	exon2	c.T277C	p.Y93H	AGTCTATACATTG	.	73	18	52	0	.	154	C	159558103	T	C	159558103	3	2	176	1	0	0	0	0	1	0	0	0	767	1406	49	2	283	2	APCS	1	159558103	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	7074065	159558103	89692518	11	22223											
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172017769	172017769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DNM3	NM_001136127	exon10	c.C1214A	p.P405Q	TTACTCCAGACAT	.	229	100	190	0	.	90	A	172017769	C	A	172017769	3	1	176	1	0	0	0	0	1	0	0	0	4673	594	21	3	1252	3	DNM3	1	172017769	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	12459666	172017769	77232852	12	22224											
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228004984	228004984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PRSS38	NM_183062	exon3	c.G386T	p.W129L	CCCAGTGGTATGA	.	84	40	71	0	.	92	T	228004984	G	T	228004984	3	4	176	1	0	0	0	0	1	0	0	0	12627	1357	47	3	396	3	PRSS38	1	228004984	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	55987215	228004984	21245637	13	22225											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228481978	228481978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OBSCN	NM_001271223	exon47	c.A12544G	p.R4182G	ACCCTCAGAGATG	.	127	36	145	0	.	403	G	228481978	A	G	228481978	3	3	176	1	0	0	0	0	1	0	0	0	10812	180	7	2	11419	2	OBSCN	1	228481978	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	476994	228481978	20768643	14	22226											
ALK	238	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	30143210	30143210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ALK	NM_004304	exon1	c.C316T	p.P106S	CCCCCGGCGCCGG	.	24	5	33	0	.	3833	A	30143210	G	A	30143210	3	1	176	1	0	0	0	0	1	0	0	0	525	1203	42	3	4662	3	ALK	2	30143210	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10		30143210	213056163	15	22227											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149227546	149227546	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MBD5	NM_018328	exon9	c.T2034C	p.S678S	TAGTTCTGCAGTT	.	58	13	61	0	.	95	C	149227546	T	C	149227546	2	2	176	1	0	0	0	0	0	0	0	1	9347	1567	55	2		2	MBD5	2	149227546	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	119084336	149227546	93971827	16	22228											
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159526346	159526346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PKP4	NM_001005476	exon17	c.A2843G	p.K948R	CCAGCAAAAACAT	.	139	44	157	0	.	97	G	159526346	A	G	159526346	3	3	176	1	0	0	0	0	1	0	0	0	11987	14	1	2	2905	2	PKP4	2	159526346	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	10298800	159526346	83673027	17	22229											
ITGB6	3694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	161029224	161029224	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ITGB6	NM_000888	exon6	c.G777T	p.R259R	GTCATTCCGCCAG	.	55	19	61	0	.	227	A	161029224	C	A	161029224	2	1	176	1	0	0	0	0	0	0	0	1	7899	842	30	3		3	ITGB6	2	161029224	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	1502878	161029224	82170149	18	22230											
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166533005	166533005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CSRNP3	NM_001172173	exon6	c.G592A	p.E198K	GTGGAAGAAAAGC	.	87	29	91	0	.	157	A	166533005	G	A	166533005	3	1	176	1	0	0	0	0	1	0	0	0	3965	943	33	3	602	3	CSRNP3	2	166533005	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	5503781	166533005	76666368	19	22231											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168115372	168115372	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	XIRP2	NM_001199143	exon11	c.G2415A	p.S805S	TTATTCGAGGAAT	.	143	47	138	0	.	104	A	168115372	G	A	168115372	2	1	176	1	0	0	0	0	0	0	0	1	17427	1045	37	1		1	XIRP2	2	168115372	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	1582367	168115372	75084001	20	22232											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170072882	170072882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRP2	NM_004525	exon35	c.G5707A	p.A1903T	TGTTAGCACTGGC	.	144	44	140	0	.	175	T	170072882	C	T	170072882	3	4	176	1	0	0	0	0	1	0	0	0	8956	710	25	3	8440	3	LRP2	2	170072882	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	1957510	170072882	73126491	21	22233											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179432581	179432581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_001267550	exon326	c.G78278A	p.G26093E	GGGGTTCCTGGTG	.	112	40	120	0	.	636	T	179432581	C	T	179432581	3	4	176	1	0	0	0	0	1	0	0	0	16732	855	30	3	29849	3	TTN	2	179432581	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	9359699	179432581	63766792	22	22234											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179554080	179554080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_001267550	exon124	c.A31948C	p.K10650Q	GAACTTTCTTCTT	.	106	35	106	0	.	636	G	179554080	T	G	179554080	3	3	176	1	0	0	0	0	1	0	0	0	16732	1792	62	5	72537	5	TTN	2	179554080	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	121499	179554080	63645293	23	22235											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179614607	179614607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_133379	exon46	c.G12520T	p.D4174Y	TGGAATCCCCTTC	.	151	59	154	0	.	636	A	179614607	C	A	179614607	3	1	176	1	0	0	0	0	1	0	0	0	16732	855	30	3	97777	3	TTN	2	179614607	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	60527	179614607	63584766	24	22236											
FSIP2	401024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186670429	186670429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FSIP2	NM_173651	exon17	c.A16663G	p.R5555G	ATAAATAGAGGTA	.	76	25	87	1	.	90	G	186670429	A	G	186670429	3	3	176	1	0	0	0	0	1	0	0	0	6075	412	15	2	16729	2	FSIP2	2	186670429	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	7055822	186670429	56528944	25	22237											
GLB1L	79411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220102300	220102300	+	Nonsense_Mutation	SNP	G	G	T	rs183755555	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GLB1L	NM_024506	exon16	c.C1623A	p.Y541X	TTTGGAGTAGAAT	.	119	35	113	0	G|0.999;A|0.001	90	T	220102300	G	T	220102300	4	4	176	1	0	0	0	0	0	1	0	0	6428	1024	36	3	349	3	GLB1L	2	220102300	Nonsense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	33431871	220102300	23097073	26	22238											
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220370193	220370193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GMPPA	NM_205847	exon9	c.G769A	p.A257T	CTCTACGCCTCCC	.	72	17	82	0	.	90	A	220370193	G	A	220370193	3	1	176	1	0	0	0	0	1	0	0	0	6494	1087	38	1	799	1	GMPPA	2	220370193	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	267893	220370193	22829180	27	22239											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220422736	220422736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OBSL1	NM_001173431	exon11	c.C3599T	p.A1200V	GCGCCAGCCCGGG	.	46	12	47	0	.	71	A	220422736	G	A	220422736	3	1	176	1	0	0	0	0	1	0	0	0	10813	971	34	3	2158	3	OBSL1	2	220422736	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	52543	220422736	22776637	28	22240											
ALPPL2	251	hgsc.bcm.edu;broad.mit.edu	37	2	233274441	233274441	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ALPPL2	NM_031313	exon11	c.1458delC	p.C486fs	CGCCTGCCTGGAG	.	41	15	29	0	.	91	-	233274441	C	-	233274441	7	5	176	1	0	1	0	1	0	0	0	0	549	747	26	0	1500	0	ALPPL2	2	233274441	Frame_Shift_Del	DEL	C	TCGA-MI-A75H-01A-11D-A32G-10	12851705	233274441	9924932	29	22241											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10102063	10102063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FANCD2	NM_001018115	exon19	c.T1742C	p.M581T	TGACCATGGCTGG	.	64	26	61	0	.	229	C	10102063	T	C	10102063	3	2	176	1	0	0	0	0	1	0	0	0	5665	1464	51	2	1812	2	FANCD2	3	10102063	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10		10102063	187920367	30	22242											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	179	61	183	1	.	24361	T	41266098	A	T	41266098	3	4	176	1	0	0	0	0	1	0	0	0	4016	275	10	4	101	4	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	31164035	41266098	156756332	31	22243											
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44762400	44762400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF502	NM_001134440	exon4	c.G91A	p.D31N	GAGCAGGATGTCT	.	100	36	107	0	.	90	A	44762400	G	A	44762400	3	1	176	1	0	0	0	0	1	0	0	0	17947	1174	41	3	97	3	ZNF502	3	44762400	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	3496302	44762400	153260030	32	22244											
CLEC3B	7123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45077186	45077186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CLEC3B	NM_003278	exon3	c.A379T	p.N127Y	GTGGGCAACGAGG	.	46	19	52	0	.	90	T	45077186	A	T	45077186	3	4	176	1	0	0	0	0	1	0	0	0	3511	130	5	4	389	4	CLEC3B	3	45077186	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	314786	45077186	152945244	33	22245											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57898307	57898307	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SLMAP	NM_007159	exon17	c.T1797A	p.L599L	TGAGCTTGAGCGG	.	40	18	53	0	.	90	A	57898307	T	A	57898307	2	1	176	1	0	0	0	0	0	0	0	1	14749	1799	63	4		4	SLMAP	3	57898307	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	12821121	57898307	140124123	34	22246											
GMPS	8833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155640077	155640077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GMPS	NM_003875	exon11	c.G1420T	p.A474S	TTTTCTGCAAGTG	.	420	139	492	2	.	229	T	155640077	G	T	155640077	3	4	176	1	0	0	0	0	1	0	0	0	6498	1319	46	3	1462	3	GMPS	3	155640077	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	97741770	155640077	42382353	35	22247											
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168838896	168838896	+	Silent	SNP	C	C	A	rs185054275	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MECOM	NM_004991	exon7	c.G1080T	p.S360S	GCCCGACGAAGTG	.	68	30	81	0	C|0.999;T|0.001	853	A	168838896	C	A	168838896	2	1	176	1	0	0	0	0	0	0	0	1	9422	523	19	1		1	MECOM	3	168838896	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	13198819	168838896	29183534	36	22248											
LRRC31	79782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169565966	169565966	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRRC31	NM_024727	exon8	c.G1269A	p.S423S	TTGAAGAGACATG	.	48	24	65	0	.	93	T	169565966	A	T	169565966	2	4	176	1	0	0	0	0	0	0	0	1	8986	291	11	4		4	LRRC31	3	169565966	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	727070	169565966	28456464	37	22249											
TNK2	10188	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195609177	195609177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TNK2	NM_001010938	exon6	c.G821T	p.G274V	AACGATCCCAGAG	.	127	36	131	1	.	957	A	195609177	C	A	195609177	3	1	176	1	0	0	0	0	1	0	0	0	16315	855	30	3	2573	3	TNK2	3	195609177	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	26043211	195609177	2413253	38	22250											
DCAF4L1	285429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	41984018	41984018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCAF4L1	NM_001029955	exon1	c.C209T	p.A70V	CTTTGGCGAGCGA	.	149	64	181	1	.	23	T	41984018	C	T	41984018	3	4	176	1	0	0	0	0	1	0	0	0	4271	768	27	1	211	1	DCAF4L1	4	41984018	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10		41984018	149170258	39	22251											
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42583637	42583637	+	Splice_Site	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ATP8A1	NM_001105529	exon11	c.834+1G>T	.	ATTTCACCTGCAT	.	65	30	70	0	.	92	A	42583637	C	A	42583637	5	1	176	1	0	0	0	0	0	0	1	0	1192	521	18	3	2771	3	ATP8A1	4	42583637	Splice_Site	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	599619	42583637	148570639	40	22252											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79391155	79391155	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FRAS1	NM_025074	exon51	c.G7281A	p.P2427P	TCAGCCGTTCCGA	.	67	22	82	0	.	68	A	79391155	G	A	79391155	2	1	176	1	0	0	0	0	0	0	0	1	6042	1132	40	1		1	FRAS1	4	79391155	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	36807518	79391155	111763121	41	22253											
DMP1	1758	broad.mit.edu;bcgsc.ca	37	4	88584445	88584445	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DMP1	NM_004407	exon6	c.T1515C	p.D505D	CCAAGATGACAAT	.	62	5	81	0	.	132	C	88584445	T	C	88584445	2	2	176	1	0	0	0	0	0	0	0	1	4583	1461	51	2		2	DMP1	4	88584445	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	9193290	88584445	102569831	42	22254											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123128393	123128393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1109	NM_015312	exon14	c.G1627A	p.D543N	TGGATCGACTGTT	.	165	40	207	0	.	80	A	123128393	G	A	123128393	3	1	176	1	0	0	0	0	1	0	0	0	8208	1058	37	1	1681	1	KIAA1109	4	123128393	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	34543948	123128393	68025883	43	22255											
BBS12	166379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123664403	123664404	+	Frame_Shift_Ins	INS	-	-	CAGG	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BBS12	NM_001178007	exon3	c.1356_1357insCAGG	p.V452fs	AGCAGTACAGGTG	.	84	25	119	0	.	92	CAGG	123664404	-	CAGG	123664403	7	5	176	1	0	1	1	0	0	0	0	0	1337	378	14	0	1358	0	BBS12	4	123664403	Frame_Shift_Ins	INS	-	TCGA-MI-A75H-01A-11D-A32G-10	536010	123664403	67489873	44	22256											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155157921	155157921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCHS2	NM_017639	exon25	c.G6518A	p.S2173N	CTAGCACTTGCTT	.	69	29	68	0	.	94	T	155157921	C	T	155157921	3	4	176	1	0	0	0	0	1	0	0	0	4288	565	20	3	2236	3	DCHS2	4	155157921	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	31493518	155157921	35996355	45	22257											
DCHS2	54798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155264728	155264728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCHS2	NM_017639	exon7	c.A871G	p.K291E	TTCCCTTAAACCT	.	34	12	29	1	.	94	C	155264728	T	C	155264728	3	2	176	1	0	0	0	0	1	0	0	0	4288	1763	61	2	8051	2	DCHS2	4	155264728	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	106807	155264728	35889548	46	22258											
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155507134	155507134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FGA	NM_000508	exon5	c.G1447A	p.V483M	AGGTCACCACTTC	.	100	33	140	0	.	93	T	155507134	C	T	155507134	3	4	176	1	0	0	0	0	1	0	0	0	5830	507	18	3	1205	3	FGA	4	155507134	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	242406	155507134	35647142	47	22259											
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37351407	37351407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NUP155	NM_153485	exon6	c.A608G	p.D203G	AAAGGATCTGGAA	.	123	39	170	0	.	205	C	37351407	T	C	37351407	3	2	176	1	0	0	0	0	1	0	0	0	10756	1435	50	2	3687	2	NUP155	5	37351407	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10		37351407	143563853	48	22260											
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96232185	96232185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ERAP2	NM_001130140	exon8	c.T1348C	p.F450L	GAAATGTTTGATG	.	200	63	233	0	.	68	C	96232185	T	C	96232185	3	2	176	1	0	0	0	0	1	0	0	0	5204	1725	60	2	1374	2	ERAP2	5	96232185	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	58880778	96232185	84683075	49	22261											
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu	37	5	140730776	140730776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PCDHGB1	NM_018922	exon1	c.G949T	p.A317S	GTGGAAGCTAAGG	.	84	4	106	0	.	33	T	140730776	G	T	140730776	3	4	176	1	0	0	0	0	1	0	0	0	11562	971	34	3	951	3	PCDHGB1	5	140730776	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	44498591	140730776	40184484	50	22262											
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149677632	149677632	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ARSI	NM_001012301	exon2	c.T855C	p.G285G	GTAGAAACCGTAG	.	64	27	80	0	.	92	G	149677632	A	G	149677632	2	3	176	1	0	0	0	0	0	0	0	1	994	30	2	2		2	ARSI	5	149677632	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	8946856	149677632	31237628	51	22263											
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161118965	161118965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GABRA6	NM_000811	exon8	c.C845A	p.T282N	TTTTAACTATGAC	.	71	25	63	0	.	163	A	161118965	C	A	161118965	3	1	176	1	0	0	0	0	1	0	0	0	6165	565	20	3	875	3	GABRA6	5	161118965	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	11441333	161118965	19796295	52	22264											
KCNIP1	30820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170160865	170160865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNIP1	NM_001034837	exon8	c.T599C	p.I200T	ATGGCATCGTAAC	.	45	11	46	0	.	92	C	170160865	T	C	170160865	3	2	176	1	0	0	0	0	1	0	0	0	8039	1435	50	2	721	2	KCNIP1	5	170160865	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	9041900	170160865	10754395	53	22265											
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177637219	177637219	+	Missense_Mutation	SNP	G	G	T	rs115721462	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HNRNPAB	NM_031266	exon7	c.G874T	p.G292C	TATGGCGGCTACG	.	52	18	78	0	G|0.999;A|0.001	22	T	177637219	G	T	177637219	3	4	176	1	0	0	0	0	1	0	0	0	7261	1116	39	1	896	1	HNRNPAB	5	177637219	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	7476354	177637219	3278041	54	22266											
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170114882	170114882	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PHF10	NM_018288	exon7	c.C750A	p.V250V	AGAACTGACCTTT	.	76	38	126	0	.	226	T	170114882	G	T	170114882	2	4	176	1	0	0	0	0	0	0	0	1	11821	1277	45	3		3	PHF10	6	170114882	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10		170114882	1000185	55	22267											
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29160618	29160618	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CPVL	NM_019029	exon2	c.T60C	p.C20C	CCCATCACAGGGG	.	105	34	144	0	.	92	G	29160618	A	G	29160618	2	3	176	1	0	0	0	0	0	0	0	1	3835	157	6	2		2	CPVL	7	29160618	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10		29160618	129978045	56	22268											
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34192707	34192707	+	Missense_Mutation	SNP	C	C	T	rs143727756		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BMPER	NM_133468	exon16	c.C1880T	p.T627I	CAGCCACCCAGTG	.	97	37	84	0	C|1.000;T|0.000	92	T	34192707	C	T	34192707	3	4	176	1	0	0	0	0	1	0	0	0	1468	507	18	3	1938	3	BMPER	7	34192707	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	5032089	34192707	124945956	57	22269											
AMPH	273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	38670937	38670937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AMPH	NM_139316	exon1	c.G15T	p.K5N	GCCCGTCTTGATG	.	46	17	30	0	.	95	A	38670937	C	A	38670937	3	1	176	1	0	0	0	0	1	0	0	0	588	912	32	3	2156	3	AMPH	7	38670937	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	4478230	38670937	120467726	58	22270											
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40027408	40027408	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CDK13	NM_003718	exon2	c.A1422C	p.A474A	AGCTGCAGAAGCA	.	99	40	105	0	.	548	C	40027408	A	C	40027408	2	2	176	1	0	0	0	0	0	0	0	1	3129	175	7	5		5	CDK13	7	40027408	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	1356471	40027408	119111255	59	22271											
CAMK2B	816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	44281927	44281927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CAMK2B	NM_172081	exon10	c.G709T	p.E237X	CCCACTCAGGGGA	.	68	28	75	0	.	334	A	44281927	C	A	44281927	4	1	176	1	0	0	0	0	0	1	0	0	2600	835	29	3	1350	3	CAMK2B	7	44281927	Nonsense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	4254519	44281927	114856736	60	22272											
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48278858	48278858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ABCA13	NM_152701	exon9	c.G918T	p.L306F	TTCCTTGGAGAAG	.	56	19	60	1	.	521	T	48278858	G	T	48278858	3	4	176	1	0	0	0	0	1	0	0	0	31	1339	47	3	781	3	ABCA13	7	48278858	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	3996931	48278858	110859805	61	22273											
DDC	1644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50595913	50595913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DDC	NM_001082971	exon6	c.T636A	p.D212E	GTTGCCATCTGAG	.	81	28	79	0	.	92	T	50595913	A	T	50595913	3	4	176	1	0	0	0	0	1	0	0	0	4325	214	8	4	842	4	DDC	7	50595913	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	2317055	50595913	108542750	62	22274											
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	75368213	75368213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HIP1	NM_005338	exon1	c.A26C	p.K9T	ACCTGCTTCATGG	.	31	13	45	0	.	1085	G	75368213	T	G	75368213	3	3	176	1	0	0	0	0	1	0	0	0	7114	1609	56	5	3211	5	HIP1	7	75368213	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	24772300	75368213	83770450	63	22275											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151860694	151860694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLL3	NM_170606	exon43	c.A9968C	p.H3323P	CTAGTATGGCCAG	.	158	56	187	0	.	1398	G	151860694	T	G	151860694	3	3	176	1	0	0	0	0	1	0	0	0	9622	1464	51	5	4835	5	MLL3	7	151860694	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	76492481	151860694	7277969	64	22276											
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154593130	154593130	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DPP6	NM_130797	exon13	c.A1365T	p.G455G	CCAGGGAGGACGA	.	70	15	55	0	.	652	T	154593130	A	T	154593130	2	4	176	1	0	0	0	0	0	0	0	1	4730	291	11	4		4	DPP6	7	154593130	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	2732436	154593130	4545533	65	22277											
EXTL3	2137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28575255	28575255	+	Missense_Mutation	SNP	C	C	T	rs200494893		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	EXTL3	NM_001440	exon3	c.C1679T	p.A560V	GCAAGGCGGCTGG	.	35	16	78	0	C|0.999;T|0.001	92	T	28575255	C	T	28575255	3	4	176	1	0	0	0	0	1	0	0	0	5327	768	27	1	1681	1	EXTL3	8	28575255	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10		28575255	117788767	66	22278											
SNTG1	54212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	51617237	51617237	+	Silent	SNP	G	G	A	rs189241890		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SNTG1	NM_018967	exon16	c.G1116A	p.V372V	CTCAGTGGAGCTG	.	76	14	48	0	G|0.999;A|0.000	95	A	51617237	G	A	51617237	2	1	176	1	0	0	0	0	0	0	0	1	14874	1335	47	3		3	SNTG1	8	51617237	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	23041982	51617237	94746785	67	22279											
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	70551048	70551048	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SULF1	NM_001128205	exon21	c.C2506T	p.Q836X	AGCTGTCAAGGAT	.	333	72	205	0	.	518	T	70551048	C	T	70551048	4	4	176	1	0	0	0	0	0	1	0	0	15369	827	29	3	2572	3	SULF1	8	70551048	Nonsense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	18933811	70551048	75812974	68	22280											
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73944310	73944310	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TERF1	NM_017489	exon8	c.A981G	p.Q327Q	GTTGCAACATGGA	.	180	106	116	0	.	228	G	73944310	A	G	73944310	2	3	176	1	0	0	0	0	0	0	0	1	15758	40	2	2		2	TERF1	8	73944310	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	3393262	73944310	72419712	69	22281											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145780976	145780976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ARHGAP39	NM_025251	exon5	c.T564A	p.D188E	ACTGTAATCCCGG	.	129	25	101	0	.	90	T	145780976	A	T	145780976	3	4	176	1	0	0	0	0	1	0	0	0	884	98	4	4	2816	4	ARHGAP39	8	145780976	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	71836666	145780976	583046	70	22282											
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2718181	2718181	+	Missense_Mutation	SNP	G	G	A	rs140256288		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNV2	NM_133497	exon1	c.G442A	p.E148K	ACAGACGAATACT	.	113	38	163	0	G|1.000;A|0.000	515	A	2718181	G	A	2718181	3	1	176	1	0	0	0	0	1	0	0	0	8095	1059	37	1	444	1	KCNV2	9	2718181	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10		2718181	138495250	71	22283											
HAUS6	54801	broad.mit.edu;mdanderson.org	37	9	19058467	19058467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HAUS6	NM_017645	exon16	c.G2298T	p.K766N	AAAACTCTTAGAA	.	167	43	184	1	.	92	A	19058467	C	A	19058467	3	1	176	1	0	0	0	0	1	0	0	0	6970	912	32	3	577	3	HAUS6	9	19058467	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	16340286	19058467	122154964	72	22284											
CNTFR	1271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	34552230	34552230	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CNTFR	NM_147164	exon9	c.C1047A	p.P349P	CAAGAAGGGTGCC	.	23	10	32	0	.	518	T	34552230	G	T	34552230	2	4	176	1	0	0	0	0	0	0	0	1	3638	987	35	3		3	CNTFR	9	34552230	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	15493763	34552230	106661201	73	22285											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77442785	77442785	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TRPM6	NM_017662	exon7	c.G750A	p.L250L	ATCAGACAGGATG	.	85	28	111	0	.	335	T	77442785	C	T	77442785	2	4	176	1	0	0	0	0	0	0	0	1	16587	465	17	3		3	TRPM6	9	77442785	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	42890555	77442785	63770646	74	22286											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128064751	128064751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GAPVD1	NM_015635	exon3	c.G675T	p.R225S	TGAGAGGTTCTCT	.	54	25	55	0	.	93	T	128064751	G	T	128064751	3	4	176	1	0	0	0	0	1	0	0	0	6239	1252	44	3	681	3	GAPVD1	9	128064751	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	50621966	128064751	13148680	75	22287											
GRIN1	2902	broad.mit.edu;mdanderson.org	37	9	140056377	140056377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GRIN1	NM_001185091	exon12	c.T1532C	p.V511A	CGCAGGTGAACAA	.	21	4	37	0	.	187	C	140056377	T	C	140056377	3	2	176	1	0	0	0	0	1	0	0	0	6778	1710	59	2	1578	2	GRIN1	9	140056377	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	11991626	140056377	1157054	76	22288											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568990	55568990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PCDH15	.	.	.	.	TATTCAGTATAGT	.	123	39	133	0	.	193	A	55568990	G	A	55568990	3	1	176	1	0	0	0	0	1	0	0	0	11511	1029	36	3	1096	3	PCDH15	10	55568990	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10		55568990	79965757	77	22289											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	70333914	70333914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TET1	NM_030625	exon2	c.A1819G	p.T607A	GAATGCACTTACT	.	37	14	44	0	.	663	G	70333914	A	G	70333914	3	3	176	1	0	0	0	0	1	0	0	0	15766	159	6	2	1821	2	TET1	10	70333914	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	14764924	70333914	65200833	78	22290											
HTRA1	5654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124273831	124273831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HTRA1	NM_002775	exon9	c.G1399A	p.E467K	GGTAATGAAGATA	.	110	28	114	0	.	90	A	124273831	G	A	124273831	3	1	176	1	0	0	0	0	1	0	0	0	7453	1291	45	3	1433	3	HTRA1	10	124273831	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	53939917	124273831	11260916	79	22291											
OR52B4	143496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4388835	4388835	+	Missense_Mutation	SNP	G	G	A	rs200224336		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OR52B4	NM_001005161	exon1	c.C691T	p.P231S	GAGAAGGCATGTG	.	73	31	91	0	G|0.999;A|0.001	90	A	4388835	G	A	4388835	3	1	176	1	0	0	0	0	1	0	0	0	11112	1203	42	3	257	3	OR52B4	11	4388835	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10		4388835	130617681	80	22292											
STK33	65975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8457664	8457664	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STK33	NM_030906	exon11	c.T970C	p.L324L	TTGCCAAAAAGGG	.	88	32	123	0	.	337	G	8457664	A	G	8457664	2	3	176	1	0	0	0	0	0	0	0	1	15299	11	1	2		2	STK33	11	8457664	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	4068829	8457664	126548852	81	22293											
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9868632	9868632	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SBF2	NM_030962	exon24	c.2807-2A>G	.	ACCCACTGTAAAT	.	159	52	195	0	.	93	C	9868632	T	C	9868632	5	2	176	1	0	0	0	0	0	0	1	0	13859	1594	55	2	2816	2	SBF2	11	9868632	Splice_Site	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	1410968	9868632	125137884	82	22294											
SAAL1	113174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18105155	18105155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SAAL1	NM_138421	exon10	c.1166delA	p.D389fs	AAATCATCTTGGG	.	201	66	196	0	.	90	-	18105155	T	-	18105155	7	5	176	1	0	1	0	1	0	0	0	0	13801	1435	50	0	270	0	SAAL1	11	18105155	Frame_Shift_Del	DEL	T	TCGA-MI-A75H-01A-11D-A32G-10	8236523	18105155	116901361	83	22295											
TRPC6	7225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	101375213	101375213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TRPC6	NM_004621	exon2	c.487delG	p.D163fs	AAGCATCCCCAAC	.	71	21	70	0	.	93	-	101375213	C	-	101375213	7	5	176	1	0	1	0	1	0	0	0	0	16580	855	30	0	2356	0	TRPC6	11	101375213	Frame_Shift_Del	DEL	C	TCGA-MI-A75H-01A-11D-A32G-10	83270058	101375213	33631303	84	22296											
KCNA1	3736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	5020766	5020766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNA1	NM_000217	exon2	c.222delC	p.D74fs	CTTCGACCCCCTG	.	65	22	63	0	.	228	-	5020766	C	-	5020766	7	5	176	1	0	1	0	1	0	0	0	0	8001	506	18	0	224	0	KCNA1	12	5020766	Frame_Shift_Del	DEL	C	TCGA-MI-A75H-01A-11D-A32G-10		5020766	128831129	85	22297											
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759514	8759514	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AICDA	NM_020661	exon2	c.A103T	p.R35W	CACGCCTCTTCAC	.	47	14	81	0	.	229	A	8759514	T	A	8759514	3	1	176	1	0	0	0	0	1	0	0	0	422	1550	54	4	509	4	AICDA	12	8759514	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	3738748	8759514	125092381	86	22298											
SLCO1B1	10599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21325651	21325651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SLCO1B1	NM_006446	exon3	c.C152A	p.S51Y	AAAGTTCCATCAT	.	118	48	136	1	.	97	A	21325651	C	A	21325651	3	1	176	1	0	0	0	0	1	0	0	0	14723	855	30	3	158	3	SLCO1B1	12	21325651	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	12566137	21325651	112526244	87	22299											
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51693401	51693401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BIN2	NM_016293	exon6	c.A506T	p.K169M	GCAGTCTTGGCCT	.	40	13	58	0	.	91	A	51693401	T	A	51693401	3	1	176	1	0	0	0	0	1	0	0	0	1433	1609	56	4	1223	4	BIN2	12	51693401	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	30367750	51693401	82158494	88	22300											
TSPAN31	6302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58140038	58140038	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TSPAN31	NM_005981	exon3	c.A311C	p.Q104P	GCAAACAGGTAAG	.	118	40	134	0	.	446	C	58140038	A	C	58140038	3	2	176	1	0	0	0	0	1	0	0	0	16643	202	7	5	321	5	TSPAN31	12	58140038	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	6446637	58140038	75711857	89	22301											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450884	85450884	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRRIQ1	NM_001079910	exon8	c.G2313A	p.V771V	ACCTGTGAAATGC	.	155	61	193	0	.	95	A	85450884	G	A	85450884	2	1	176	1	0	0	0	0	0	0	0	1	9029	1277	45	3		3	LRRIQ1	12	85450884	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	27310846	85450884	48401011	90	22302											
UHRF1BP1L	23074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	100452950	100452950	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	UHRF1BP1L	NM_015054	exon14	c.G2105A	p.W702X	TCTATCCAAAATT	.	135	46	135	0	.	24	T	100452950	C	T	100452950	4	4	176	1	0	0	0	0	0	1	0	0	16966	595	21	3	2321	3	UHRF1BP1L	12	100452950	Nonsense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	15002066	100452950	33398945	91	22303											
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126068404	126068404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TMEM132B	NM_052907	exon5	c.A1286T	p.E429V	ACACCGAGGTTTT	.	45	15	43	0	.	185	T	126068404	A	T	126068404	3	4	176	1	0	0	0	0	1	0	0	0	16043	304	11	4	1304	4	TMEM132B	12	126068404	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	25615454	126068404	7783491	92	22304											
NOC4L	79050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132636050	132636050	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NOC4L	NM_024078	exon12	c.G1095A	p.V365V	CCTGGTGGCCGCC	.	23	11	26	0	.	90	A	132636050	G	A	132636050	2	1	176	1	0	0	0	0	0	0	0	1	10515	1335	47	3		3	NOC4L	12	132636050	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	6567646	132636050	1215845	93	22305											
MAB21L1	4081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049446	36049446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MAB21L1	NM_005584	exon1	c.T830C	p.L277P	GAAACCAGAGTCT	.	142	40	169	1	.	92	G	36049446	A	G	36049446	3	3	176	1	0	0	0	0	1	0	0	0	9141	188	7	2	253	2	MAB21L1	13	36049446	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10		36049446	79120432	94	22306											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101735199	101735199	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NALCN	NM_052867	exon33	c.A3726C	p.A1242A	CATTGTTGCCAAA	.	73	32	66	0	.	167	G	101735199	T	G	101735199	2	3	176	1	0	0	0	0	0	0	0	1	10148	1799	63	5		5	NALCN	13	101735199	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	65685753	101735199	13434679	95	22307											
TUBGCP3	10426	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	113210371	113210371	+	Missense_Mutation	SNP	G	G	A	rs186110739		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TUBGCP3	NM_006322	exon6	c.C716T	p.T239M	CCACCCGTATCCC	.	74	24	88	1	G|0.999;A|0.000	90	A	113210371	G	A	113210371	3	1	176	1	0	0	0	0	1	0	0	0	16764	1145	40	1	2075	1	TUBGCP3	13	113210371	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	11475172	113210371	1959507	96	22308											
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45521641	45521641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FAM179B	NM_015091	exon14	c.A4157G	p.Y1386C	ACAGGTATTATGG	.	53	17	75	0	.	93	G	45521641	A	G	45521641	3	3	176	1	0	0	0	0	1	0	0	0	5506	449	16	2	4211	2	FAM179B	14	45521641	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10		45521641	61827899	97	22309											
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51390766	51390766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PYGL	NM_002863	exon5	c.G581T	p.R194L	TCTGGGCGGGACT	.	110	34	140	0	.	91	A	51390766	C	A	51390766	3	1	176	1	0	0	0	0	1	0	0	0	12861	768	27	1	2026	1	PYGL	14	51390766	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	5869125	51390766	55958774	98	22310											
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81965951	81965953	+	Frame_Shift_Del	DEL	ACC	ACC	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SEL1L	NM_001244984	exon7	c.831_831del	p.277_277del	AGTATTACCTTTG	.	151	30	213	0	.	227	-	81965953	ACC	-	81965951	7	5	176	1	0	1	0	1	0	0	0	0	14010	405	14	0	1611	0	SEL1L	14	81965951	Frame_Shift_Del	DEL	ACC	TCGA-MI-A75H-01A-11D-A32G-10	30575185	81965951	25383589	99	22311											
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88411981	88411981	+	Missense_Mutation	SNP	G	G	A	rs200960659		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GALC	NM_000153	exon14	c.C1586T	p.T529M	CGTAGCGTGAAGT	.	139	46	139	0	.	90	A	88411981	G	A	88411981	3	1	176	1	0	0	0	0	1	0	0	0	6201	1145	40	1	487	1	GALC	14	88411981	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	6446030	88411981	18937559	100	22312											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33872221	33872221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	RYR3	NM_001243996	exon13	c.A1313G	p.E438G	TAGAAGAAGTCCT	.	134	41	167	0	.	520	G	33872221	A	G	33872221	3	3	176	1	0	0	0	0	1	0	0	0	13770	246	9	2	1363	2	RYR3	15	33872221	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10		33872221	68659171	101	22313											
GOLGA8A	23015	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34673744	34673744	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_181077	exon16	c.G1680A	p.Q560Q	GTTGTCCTGGGAA	.	270	37	303	0	.	.	T	34673744	C	T	34673744	2	4	176	1	0	0	0	0	0	0	0	1	6563	680	24	3		3	GOLGA8A	15	34673744	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	801523	34673744	67857648	102	22314											
GOLGA8B	440270	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34819965	34819965	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001023567	exon16	c.G1680A	p.Q560Q	GTTGTCCTGGGAA	.	202	26	202	0	.	.	T	34819965	C	T	34819965	2	4	176	1	0	0	0	0	0	0	0	1	6564	680	24	3		3	GOLGA8B	15	34819965	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	146221	34819965	67711427	103	22315											
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42519078	42519078	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TMEM87A	NM_015497	exon15	c.C1329T	p.A443A	CCAGATGGCATCG	.	45	14	54	0	.	91	A	42519078	G	A	42519078	2	1	176	1	0	0	0	0	0	0	0	1	16207	1335	47	3		3	TMEM87A	15	42519078	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	7699113	42519078	60012314	104	22316											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81235392	81235392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1199	NM_018689	exon27	c.T3806G	p.L1269R	CCATTCTGCAAGG	.	99	34	107	0	.	93	G	81235392	T	G	81235392	3	3	176	1	0	0	0	0	1	0	0	0	8213	1580	55	5	3908	5	KIAA1199	15	81235392	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	38716314	81235392	21296000	105	22317											
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2256124	2256124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLST8	NM_001199174	exon2	c.T38C	p.V13A	ACCCGGTCATCCT	.	38	15	57	0	.	392	C	2256124	T	C	2256124	3	2	176	1	0	0	0	0	1	0	0	0	9634	1667	58	2	40	2	MLST8	16	2256124	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10		2256124	88098629	106	22318											
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	5462324	5462325	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP1	NM_014922	exon4	c.1692_1693insT	p.L564fs	GGGTCCCAATGGC	.	107	37	137	0	.	274	A	5462325	-	A	5462324	7	5	176	1	0	1	1	0	0	0	0	0	10471	593	21	0	2860	0	NLRP1	17	5462324	Frame_Shift_Ins	INS	-	TCGA-MI-A75H-01A-11D-A32G-10		5462324	75732886	107	22319											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408576	10408576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MYH1	NM_005963	exon21	c.T2339C	p.M780T	TCTCGCATCTCCT	.	122	39	116	0	.	171	G	10408576	A	G	10408576	3	3	176	1	0	0	0	0	1	0	0	0	10029	217	8	2	3560	2	MYH1	17	10408576	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	4946252	10408576	70786634	108	22320											
CDRT1	374286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15508540	15508541	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CDRT1	NM_006382	exon7	c.1429_1430del	p.477_477del	CACCTGATACTTA	.	348	0	380	0	.	68	-	15508541	AT	-	15508540	7	5	176	1	0	1	0	1	0	0	0	0	3174	333	12	0	852	0	CDRT1	17	15508540	Frame_Shift_Del	DEL	AT	TCGA-MI-A75H-01A-11D-A32G-10	5099964	15508540	65686670	109	22321											
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18874756	18874756	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FAM83G	NM_001039999	exon6	c.A2388G	p.L796L	GGCCTTTAGGTGC	.	57	12	60	0	.	69	C	18874756	T	C	18874756	2	2	176	1	0	0	0	0	0	0	0	1	5639	1741	61	2		2	FAM83G	17	18874756	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	3366216	18874756	62320454	110	22322											
KRTAP1-5	83895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39183121	39183122	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	p.G96F	CCAATGCCACAGC	.	56	21	52	0	.	.	AA	39183122	CC	AA	39183121	3	1	176	1	0	0	0	0	1	0	0	0	8504	739	26	3	241	3	KRTAP1-5	17	39183121	Missense_Mutation	DNP	CC	TCGA-MI-A75H-01A-11D-A32G-10	20308365	39183121	42012089	111	22323											
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu	37	17	43911988	43911988	+	Splice_Site	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CRHR1	NM_001256299	exon15	c.583-2A>T	.	GCCCACAGGTCCG	.	23	4	22	0	.	522	T	43911988	A	T	43911988	5	4	176	1	0	0	0	0	0	0	1	0	3871	202	7	4	1247	4	CRHR1	17	43911988	Splice_Site	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	4728867	43911988	37283222	112	22324											
CA10	56934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	50235089	50235089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CA10	NM_001082534	exon2	c.T58C	p.S20P	TACCTGATATGCA	.	78	32	109	0	.	516	G	50235089	A	G	50235089	3	3	176	1	0	0	0	0	1	0	0	0	2511	333	12	2	964	2	CA10	17	50235089	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	6323101	50235089	30960121	113	22325											
AMZ2	51321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	66246521	66246521	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AMZ2	NM_001033574	exon2	c.G193T	p.E65X	CACCCTGAGGCTC	.	108	19	115	0	.	22	T	66246521	G	T	66246521	4	4	176	1	0	0	0	0	0	1	0	0	597	1291	45	3	195	3	AMZ2	17	66246521	Nonsense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	16011432	66246521	14948689	114	22326											
ASPSCR1	79058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79974909	79974909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ASPSCR1	NM_001251888	exon16	c.T1850A	p.V617D	CGCTGGTCCCCCC	.	33	14	54	0	.	877	A	79974909	T	A	79974909	3	1	176	1	0	0	0	0	1	0	0	0	1059	1667	58	4	1626	4	ASPSCR1	17	79974909	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	13728388	79974909	1220301	115	22327											
APCDD1	147495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10488026	10488026	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	APCDD1	NM_153000	exon5	c.C1536A	p.I512I	GAACATCCGCAGA	.	33	14	34	1	.	90	A	10488026	C	A	10488026	2	1	176	1	0	0	0	0	0	0	0	1	765	845	30	3		3	APCDD1	18	10488026	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10		10488026	67589222	116	22328											
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14511960	14511960	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	POTEC	NM_001137671	exon11	c.C1566T	p.L522L	ACGCAAGAGATCT	.	608	183	756	0	.	3	A	14511960	G	A	14511960	2	1	176	1	0	0	0	0	0	0	0	1	12262	929	33	3		3	POTEC	18	14511960	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	4023934	14511960	63565288	117	22329											
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	57021788	57021788	+	Missense_Mutation	SNP	T	T	A	rs139797136	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LMAN1	NM_005570	exon4	c.A502T	p.I168L	TGCCTATAATTAC	.	77	24	76	0	T|1.000;C|0.000	91	A	57021788	T	A	57021788	3	1	176	1	0	0	0	0	1	0	0	0	8836	1406	49	4	1070	4	LMAN1	18	57021788	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	42509828	57021788	21055460	118	22330											
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6226990	6226990	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLLT1	NM_005934	exon5	c.A544T	p.K182X	TAACCTTGGAGCC	.	110	28	132	0	.	658	A	6226990	T	A	6226990	4	1	176	1	0	0	0	0	0	1	0	0	9625	1821	63	4	1167	4	MLLT1	19	6226990	Nonsense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10		6226990	52901993	119	22331											
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8167618	8167618	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FBN3	NM_032447	exon39	c.T5079C	p.T1693T	GATGGGAGTGGGG	.	56	21	63	1	.	100	G	8167618	A	G	8167618	2	3	176	1	0	0	0	0	0	0	0	1	5704	291	11	2		2	FBN3	19	8167618	Silent	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	1940628	8167618	50961365	120	22332											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9072822	9072822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC16	NM_024690	exon3	c.C14624A	p.S4875X	GGTATTGATCTGG	.	267	93	295	0	.	566	T	9072822	G	T	9072822	4	4	176	1	0	0	0	0	0	1	0	0	9973	1294	45	3	29227	3	MUC16	19	9072822	Nonsense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	905204	9072822	50056161	121	22333											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085379	9085379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC16	NM_024690	exon1	c.C6436T	p.L2146F	TTGGAAGAGGGAC	.	83	29	93	0	.	566	A	9085379	G	A	9085379	3	1	176	1	0	0	0	0	1	0	0	0	9973	942	33	3	37423	3	MUC16	19	9085379	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	12557	9085379	50043604	122	22334											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15280956	15280956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NOTCH3	NM_000435	exon28	c.A5140T	p.M1714L	CCCCCATCAGGCT	.	72	29	95	0	.	855	A	15280956	T	A	15280956	3	1	176	1	0	0	0	0	1	0	0	0	10550	1435	50	4	1849	4	NOTCH3	19	15280956	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	6195577	15280956	43848027	123	22335											
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18375495	18375495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1683	NM_001145304	exon3	c.G2855T	p.R952L	AGGGCTCGGGACA	.	58	16	49	0	.	92	A	18375495	C	A	18375495	3	1	176	1	0	0	0	0	1	0	0	0	8251	884	31	1	1256	1	KIAA1683	19	18375495	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	3094539	18375495	40753488	124	22336											
HAPLN4	404037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19369444	19369444	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HAPLN4	NM_023002	exon4	c.G705A	p.G235G	CCCGGTCCCCCCC	.	48	21	42	0	.	91	T	19369444	C	T	19369444	2	4	176	1	0	0	0	0	0	0	0	1	6957	842	30	3		3	HAPLN4	19	19369444	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	993949	19369444	39759539	125	22337											
ZNF737	100129842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20736517	20736517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF737	NM_001159293	exon2	c.T128C	p.L43P	TCACCAAGGAAGA	.	399	162	442	0	.	1	G	20736517	A	G	20736517	3	3	176	1	0	0	0	0	1	0	0	0	18123	72	3	2	1494	2	ZNF737	19	20736517	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	1367073	20736517	38392466	126	22338											
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51633221	51633221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SIGLEC9	NM_014441	exon7	c.T1277C	p.V426A	CCTCAGTGGGGGA	.	137	29	76	0	.	91	C	51633221	T	C	51633221	3	2	176	1	0	0	0	0	1	0	0	0	14315	1696	59	2	1303	2	SIGLEC9	19	51633221	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	30896704	51633221	7495762	127	22339											
ZNF841	284371	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52570807	52570807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001136499	exon7	c.G328A	p.G110R	TTTCTCCTGTGTT	.	292	38	188	1	.	.	T	52570807	C	T	52570807	3	4	176	1	0	0	0	0	1	0	0	0	18186	690	24	3	2450	3	ZNF841	19	52570807	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	937586	52570807	6558176	128	22340											
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53854549	53854549	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_138374	exon4	c.A621T	p.E207D	GCAGGAAGTACAC	.	194	35	172	0	.	.	T	53854549	A	T	53854549	3	4	176	1	0	0	0	0	1	0	0	0	18188	69	3	4	631	4	ZNF845	19	53854549	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	1283742	53854549	5274434	129	22341											
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	53856524	53856524	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_138374	exon4	c.A2596T	p.K866X	TGTGGCAAGGTTT	.	173	37	86	0	.	.	T	53856524	A	T	53856524	4	4	176	1	0	0	0	0	0	1	0	0	18188	131	5	4	2606	4	ZNF845	19	53856524	Nonsense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	1975	53856524	5272459	130	22342											
ZNF813	126017	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53995183	53995183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF813	NM_001004301	exon4	c.T1697A	p.L566H	CACACCTTGCACG	.	168	34	128	1	.	67	A	53995183	T	A	53995183	3	1	176	1	0	0	0	0	1	0	0	0	18172	1609	56	4	1707	4	ZNF813	19	53995183	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	138659	53995183	5133800	131	22343											
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54301639	54301639	+	Missense_Mutation	SNP	C	C	T	rs146368839		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP12	NM_144687	exon8	c.G2785A	p.G929S	CACAGGCGGCAGA	.	119	48	82	0	C|0.998;T|0.002	211	T	54301639	C	T	54301639	3	4	176	1	0	0	0	0	1	0	0	0	10474	768	27	1	412	1	NLRP12	19	54301639	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	306456	54301639	4827344	132	22344											
KIR2DL3	3804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55263136	55263136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIR2DL3	NM_015868	exon6	c.T751A	p.S251T	GGGACCTCAGTGG	.	14	7	22	0	.	92	A	55263136	T	A	55263136	3	1	176	1	0	0	0	0	1	0	0	0	8317	1551	54	4	773	4	KIR2DL3	19	55263136	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	961497	55263136	3865847	133	22345											
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56485050	56485050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP8	NM_176811	exon7	c.G2567T	p.C856F	TTACTTGTGAAAG	.	112	27	76	1	.	361	T	56485050	G	T	56485050	3	4	176	1	0	0	0	0	1	0	0	0	10483	1377	48	3	2593	3	NLRP8	19	56485050	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	1221914	56485050	2643933	134	22346											
ZNF417	147687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58419943	58419943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF417	NM_152475	exon3	c.G1703A	p.S568N	TGTGAACTCTGAT	.	346	66	185	0	.	90	T	58419943	C	T	58419943	3	4	176	1	0	0	0	0	1	0	0	0	17891	565	20	3	28	3	ZNF417	19	58419943	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	1934893	58419943	709040	135	22347											
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	56179629	56179629	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZBP1	NM_030776	exon8	c.G1290A	p.X430X	TGTGCACTAAATC	.	50	12	50	0	.	228	T	56179629	C	T	56179629	2	4	176	1	0	0	0	0	0	0	0	1	17518	576	20	3		3	ZBP1	20	56179629	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10		56179629	6845891	136	22348											
PPDPF	79144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62153144	62153144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PPDPF	NM_024299	exon4	c.G257A	p.S86N	CCAGCAGCATGAC	.	52	21	51	0	.	90	A	62153144	G	A	62153144	3	1	176	1	0	0	0	0	1	0	0	0	12306	971	34	3	267	3	PPDPF	20	62153144	Missense_Mutation	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	5973515	62153144	872376	137	22349											
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10942966	10942966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TPTE	NM_199261	exon12	c.T621A	p.H207Q	AAACAGATGAAAA	.	572	99	695	0	.	344	T	10942966	A	T	10942966	3	4	176	1	0	0	0	0	1	0	0	0	16427	330	12	4	1086	4	TPTE	21	10942966	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10		10942966	37186929	138	22350											
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46655628	46655628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PKDREJ	NM_006071	exon1	c.G3592A	p.V1198M	GGCCCACGTATAA	.	71	16	60	2	.	156	T	46655628	C	T	46655628	3	4	176	1	0	0	0	0	1	0	0	0	11970	536	19	1	3173	1	PKDREJ	22	46655628	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10		46655628	4648938	139	22351											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51113571	51113571	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SHANK3	NM_033517	exon2	c.T159C	p.Y53Y	CAACTATGGGCTT	.	32	24	29	0	.	69	C	51113571	T	C	51113571	2	2	176	1	0	0	0	0	0	0	0	1	14266	1471	51	2		2	SHANK3	22	51113571	Silent	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	4457943	51113571	190995	140	22352											
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48125757	48125757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SSX1	NM_005635	exon7	c.C502A	p.L168M	CACAGACTGCGTG	.	216	170	238	0	.	522	A	48125757	C	A	48125757	3	1	176	1	0	0	0	0	1	0	0	0	15202	564	20	3	524	3	SSX1	23	48125757	Missense_Mutation	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10		48125757	107144803	141	22353											
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	57936473	57936473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZXDA	NM_007156	exon1	c.A382C	p.S128R	CGCCGCTCTCGTC	.	9	8	8	0	.	131	G	57936473	T	G	57936473	3	3	176	1	0	0	0	0	1	0	0	0	18247	1551	54	5	2021	5	ZXDA	23	57936473	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	9810716	57936473	97334087	142	22354											
HEPH	9843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65408258	65408258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HEPH	NM_138737	exon5	c.T845C	p.L282P	TCTTCCTCCTCTT	.	100	68	128	1	.	135	C	65408258	T	C	65408258	3	2	176	1	0	0	0	0	1	0	0	0	7054	1551	54	2	863	2	HEPH	23	65408258	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	7471785	65408258	89862302	143	22355											
NAP1L2	4674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	72434298	72434298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NAP1L2	NM_021963	exon1	c.T31C	p.S11P	ATTCTGACAGCTC	.	119	86	135	0	.	130	G	72434298	A	G	72434298	3	3	176	1	0	0	0	0	1	0	0	0	10157	275	10	2	1355	2	NAP1L2	23	72434298	Missense_Mutation	SNP	A	TCGA-MI-A75H-01A-11D-A32G-10	7026040	72434298	82836262	144	22356											
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	86877345	86877345	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KLHL4	NM_019117	exon5	c.G1059T	p.V353V	GTGGGTGGGGCAT	.	122	83	173	1	.	133	T	86877345	G	T	86877345	2	4	176	1	0	0	0	0	0	0	0	1	8391	1335	47	3		3	KLHL4	23	86877345	Silent	SNP	G	TCGA-MI-A75H-01A-11D-A32G-10	14443047	86877345	68393215	145	22357											
SPRY3	10251	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	155003829	155003829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SPRY3	NM_005840	exon2	c.T296C	p.L99P	AAAGGCTCTTGGC	.	167	65	164	1	.	136	C	155003829	T	C	155003829	3	2	176	1	0	0	0	0	1	0	0	0	15106	1551	54	2	298	2	SPRY3	23	155003829	Missense_Mutation	SNP	T	TCGA-MI-A75H-01A-11D-A32G-10	68126484	155003829	266731	146	22358											
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	155233487	155233487	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	IL9R	NM_176786	exon5	c.C534T	p.A178A	GTCAGCCTGGTGG	.	121	38	113	0	.	40	T	155233487	C	T	155233487	2	4	176	1	0	0	0	0	0	0	0	1	7708	680	24	3		3	IL9R	23	155233487	Silent	SNP	C	TCGA-MI-A75H-01A-11D-A32G-10	229658	155233487	37073	147	22359											
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	11574466	11574466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PTCHD2	NM_020780	exon4	c.G1336T	p.G446W	CTCTATGGGGGGA	.	41	13	61	0	.	209	T	11574466	G	T	11574466	3	4	177	1	0	0	0	0	1	0	0	0	12733	1348	47	3	1346	3	PTCHD2	1	11574466	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		11574466	237676155	1	22360											
PADI4	23569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17690059	17690059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PADI4	NM_012387	exon16	c.C1801A	p.P601T	CCCAAGCCCTTCG	.	114	50	84	0	.	70	A	17690059	C	A	17690059	3	1	177	1	0	0	0	0	1	0	0	0	11380	739	26	3	1863	3	PADI4	1	17690059	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	6115593	17690059	231560562	2	22361											
STMN1	3925	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	26227524	26227524	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	STMN1	NM_005563	exon5	c.G433T	p.E145X	CAGTCTCGTCAGC	.	125	44	108	0	.	90	A	26227524	C	A	26227524	4	1	177	1	0	0	0	0	0	1	0	0	15307	893	31	1	171	1	STMN1	1	26227524	Nonsense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	8537465	26227524	223023097	3	22362											
PTCH2	8643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45292375	45292375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PTCH2	NM_001166292	exon18	c.G2761A	p.A921T	AGTCTGCAGTCTT	.	29	8	34	0	.	851	T	45292375	C	T	45292375	3	4	177	1	0	0	0	0	1	0	0	0	12731	710	25	3	890	3	PTCH2	1	45292375	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	19064851	45292375	203958246	4	22363											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62341008	62341008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	INADL	NM_176877	exon21	c.A2929C	p.N977H	AATCTTAATTCAT	.	392	144	406	0	.	94	C	62341008	A	C	62341008	3	2	177	1	0	0	0	0	1	0	0	0	7731	362	13	5	3007	5	INADL	1	62341008	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	17048633	62341008	186909613	5	22364											
FOXD3	27022	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	63788839	63788839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FOXD3	NM_012183	exon1	c.A110G	p.E37G	TGGAAGAGAAGGA	.	20	7	10	0	.	226	G	63788839	A	G	63788839	3	3	177	1	0	0	0	0	1	0	0	0	5998	304	11	2	112	2	FOXD3	1	63788839	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	1447831	63788839	185461782	6	22365											
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75608866	75608866	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LHX8	NM_001001933	exon6	c.A453G	p.R151R	CCGGAGAGCCAAG	.	97	27	76	0	.	93	G	75608866	A	G	75608866	2	3	177	1	0	0	0	0	0	0	0	1	8776	301	11	2		2	LHX8	1	75608866	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	11820027	75608866	173641755	7	22366											
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85121516	85121516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SSX2IP	NM_001166417	exon12	c.A1388T	p.E463V	AATACCTCCAATC	.	61	25	73	0	.	92	A	85121516	T	A	85121516	3	1	177	1	0	0	0	0	1	0	0	0	15203	1565	54	4	472	4	SSX2IP	1	85121516	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	9512650	85121516	164129105	8	22367											
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86913417	86913417	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CLCA2	NM_006536	exon11	c.A1940T	p.E647V	AGCCAGAGACTGG	.	38	11	37	0	.	155	T	86913417	A	T	86913417	3	4	177	1	0	0	0	0	1	0	0	0	3458	304	11	4	1982	4	CLCA2	1	86913417	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	1791901	86913417	162337204	9	22368											
CLCA4	22802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87029375	87029375	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CLCA4	NM_012128	exon4	c.C480G	p.L160L	TCACCTCCGGTGG	.	138	50	134	1	.	92	G	87029375	C	G	87029375	2	3	177	1	0	0	0	0	0	0	0	1	3459	842	30	4		4	CLCA4	1	87029375	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	115958	87029375	162221246	10	22369											
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325807	158325807	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CD1E	NM_030893	exon4	c.C816A	p.T272T	AGCAACCCTGGAT	.	111	28	89	0	.	93	A	158325807	C	A	158325807	2	1	177	1	0	0	0	0	0	0	0	1	2978	610	22	3		3	CD1E	1	158325807	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	71296432	158325807	90924814	11	22370											
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161132173	161132173	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	USP21	NM_012475	exon4	c.C774T	p.L258L	AGAGCTCACTGAA	.	148	51	120	0	.	660	T	161132173	C	T	161132173	2	4	177	1	0	0	0	0	0	0	0	1	17050	813	29	3		3	USP21	1	161132173	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	2806366	161132173	88118448	12	22371											
ATF6	22926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161762113	161762114	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ATF6	NM_007348	exon6	c.684_685insA	p.T228fs	ACCCACTAAAGGT	.	32	11	30	0	.	93	A	161762114	-	A	161762113	7	5	177	1	0	1	1	0	0	0	0	0	1084	1509	53	0	706	0	ATF6	1	161762113	Frame_Shift_Ins	INS	-	TCGA-MI-A75I-01A-11D-A32G-10	629940	161762113	87488508	13	22372											
RABGAP1L	9910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	174957891	174957891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RABGAP1L	NM_001243765	exon8	c.C876A	p.D292E	GAAGGACTCACTT	.	86	36	91	0	.	540	A	174957891	C	A	174957891	3	1	177	1	0	0	0	0	1	0	0	0	12965	580	20	3		3	RABGAP1L	1	174957891	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	13195778	174957891	74292730	14	22373											
LHX9	56956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197887089	197887089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LHX9	NM_020204	exon1	c.C136T	p.R46C	GAGGCCCGTCTGG	.	111	29	81	0	.	91	T	197887089	C	T	197887089	3	4	177	1	0	0	0	0	1	0	0	0	8777	652	23	1	170	1	LHX9	1	197887089	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	22929198	197887089	51363532	15	22374											
IPO9	55705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201817700	201817700	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IPO9	NM_018085	exon4	c.T492C	p.H164H	CGTCCATGGAGCC	.	105	26	98	0	.	228	C	201817700	T	C	201817700	2	2	177	1	0	0	0	0	0	0	0	1	7799	1461	51	2		2	IPO9	1	201817700	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	3930611	201817700	47432921	16	22375											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204210871	204210871	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PLEKHA6	NM_014935	exon16	c.C2244T	p.I748I	AAGGCTGATGTCT	.	100	33	95	0	.	654	A	204210871	G	A	204210871	2	1	177	1	0	0	0	0	0	0	0	1	12060	1280	45	3		3	PLEKHA6	1	204210871	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	2393171	204210871	45039750	17	22376											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205041085	205041085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CNTN2	NM_005076	exon20	c.G2555T	p.W852L	GCTACTGGAAAGC	.	52	20	39	0	.	91	T	205041085	G	T	205041085	3	4	177	1	0	0	0	0	1	0	0	0	3641	1357	47	3	2629	3	CNTN2	1	205041085	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	830214	205041085	44209536	18	22377											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207644213	207644213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CR2	NM_001006658	exon7	c.C1354G	p.Q452E	TCCATACAGTGTA	.	96	24	70	0	.	232	G	207644213	C	G	207644213	3	3	177	1	0	0	0	0	1	0	0	0	3842	479	17	4	1380	4	CR2	1	207644213	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	2603128	207644213	41606408	19	22378											
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215259976	215259976	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KCNK2	NM_001017425	exon2	c.C312G	p.S104S	CATATCCCAACAT	.	96	24	60	0	.	90	G	215259976	C	G	215259976	2	3	177	1	0	0	0	0	0	0	0	1	8066	610	22	4		4	KCNK2	1	215259976	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	7615763	215259976	33990645	20	22379											
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	218607497	218607497	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TGFB2	NM_001135599	exon4	c.A668T	p.E223V	GAGCAGAAGGCGA	.	161	72	124	0	.	710	T	218607497	A	T	218607497	3	4	177	1	0	0	0	0	1	0	0	0	15815	246	9	4	682	4	TGFB2	1	218607497	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	3347521	218607497	30643124	21	22380											
CMPK2	129607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	7003625	7003625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CMPK2	NM_001256478	exon2	c.G760A	p.V254I	CAACAACCTGGAA	.	81	26	43	1	.	68	T	7003625	C	T	7003625	3	4	177	1	0	0	0	0	1	0	0	0	3581	507	18	3	605	3	CMPK2	2	7003625	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10		7003625	236195748	22	22381											
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11922631	11922631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LPIN1	NM_001261428	exon9	c.G1409C	p.R470T	GGAAAAGAGGTAC	.	70	21	68	0	.	156	C	11922631	G	C	11922631	3	2	177	1	0	0	0	0	1	0	0	0	8918	942	33	4	1176	4	LPIN1	2	11922631	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	4919006	11922631	231276742	23	22382											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24011501	24011501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ATAD2B	NM_001242338	exon20	c.G2657T	p.R886I	TGTATTCTAAAGA	.	99	36	120	0	.	68	A	24011501	C	A	24011501	3	1	177	1	0	0	0	0	1	0	0	0	1072	913	32	3	1755	3	ATAD2B	2	24011501	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	12088870	24011501	219187872	24	22383											
POMC	5443	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	25384341	25384341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	POMC	NM_001035256	exon4	c.C413T	p.S138F	GAGTAGGAGCGCT	.	30	16	12	0	.	91	A	25384341	G	A	25384341	3	1	177	1	0	0	0	0	1	0	0	0	12242	1174	41	3	394	3	POMC	2	25384341	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	1372840	25384341	217815032	25	22384											
KCNG3	170850	hgsc.bcm.edu;mdanderson.org	37	2	42720469	42720469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KCNG3	NM_172344	exon1	c.G173T	p.R58L	TCGTTGCGCTCGC	.	24	8	9	0	.	90	A	42720469	C	A	42720469	3	1	177	1	0	0	0	0	1	0	0	0	8029	768	27	1	1145	1	KCNG3	2	42720469	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	17336128	42720469	200478904	26	22385											
LOC728819	0	ucsc.edu;mdanderson.org	37	2	43902537	43902537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_001101330	exon1	c.C925T	p.P309S	CAACTGGAGGCAA	.	76	32	98	1	.	.	A	43902537	G	A	43902537	3	1	177	1	0	0	0	0	1	0	0	0	8887	1174	41	3	26	3	LOC728819	2	43902537	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	1182068	43902537	199296836	27	22386											
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85770059	85770059	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAT2A	NM_005911	exon8	c.T987C	p.S329S	ATTATCTATCTCC	.	172	57	181	0	.	90	C	85770059	T	C	85770059	2	2	177	1	0	0	0	0	0	0	0	1	9330	1509	53	2		2	MAT2A	2	85770059	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	41867522	85770059	157429314	28	22387											
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747847	121747847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GLI2	NM_005270	exon13	c.A4357T	p.M1453L	ATCCACATGTACG	.	99	38	96	0	.	954	T	121747847	A	T	121747847	3	4	177	1	0	0	0	0	1	0	0	0	6438	217	8	4	4407	4	GLI2	2	121747847	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	35977788	121747847	121451526	29	22388											
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153471456	153471456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FMNL2	NM_052905	exon12	c.C1154A	p.A385D	AAGATGCTGAAAC	.	90	40	92	0	.	516	A	153471456	C	A	153471456	3	1	177	1	0	0	0	0	1	0	0	0	5952	797	28	3	1200	3	FMNL2	2	153471456	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	31723609	153471456	89727917	30	22389											
ERMN	57471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	158177872	158177872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ERMN	NM_001009959	exon4	c.T805C	p.S269P	ATCTGGAATAAGC	.	102	5	130	0	.	92	G	158177872	A	G	158177872	3	3	177	1	0	0	0	0	1	0	0	0	5235	246	9	2	92	2	ERMN	2	158177872	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	4706416	158177872	85021501	31	22390											
TBR1	10716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162273138	162273138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBR1	NM_006593	exon1	c.G217A	p.D73N	TCCAAGGACTCAC	.	64	28	62	0	.	91	A	162273138	G	A	162273138	3	1	177	1	0	0	0	0	1	0	0	0	15644	1174	41	3	219	3	TBR1	2	162273138	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	4095266	162273138	80926235	32	22391											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170003385	170003385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRP2	NM_004525	exon69	c.C12675A	p.F4225L	GTCCTCGAAAACC	.	149	49	153	0	.	175	T	170003385	G	T	170003385	3	4	177	1	0	0	0	0	1	0	0	0	8956	1049	37	1	1336	1	LRP2	2	170003385	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	7730247	170003385	73195988	33	22392											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179479034	179479034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TTN	NM_001267550	exon262	c.A49090G	p.T16364A	CATTGGTTACATC	.	140	46	133	0	.	636	C	179479034	T	C	179479034	3	2	177	1	0	0	0	0	1	0	0	0	16732	1725	60	2	59007	2	TTN	2	179479034	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	9475649	179479034	63720339	34	22393											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179489420	179489420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TTN	NM_001267550	exon242	c.A44587G	p.T14863A	CGACCGTCTGGTC	.	91	33	87	0	.	636	C	179489420	T	C	179489420	3	2	177	1	0	0	0	0	1	0	0	0	16732	1667	58	2	63590	2	TTN	2	179489420	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	10386	179489420	63709953	35	22394											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198266711	198266711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SF3B1	NM_012433	exon15	c.A2221C	p.K741Q	TTACCTTTCCTCT	.	169	60	155	0	.	140	G	198266711	T	G	198266711	3	3	177	1	0	0	0	0	1	0	0	0	14149	1850	64	5	1737	5	SF3B1	2	198266711	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	18777291	198266711	44932662	36	22395											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220336992	220336992	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SPEG	NM_005876	exon15	c.T3879C	p.A1293A	GGTGGCTGTGACG	.	28	11	33	0	.	383	C	220336992	T	C	220336992	2	2	177	1	0	0	0	0	0	0	0	1	15035	1567	55	2		2	SPEG	2	220336992	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	22070281	220336992	22862381	37	22396											
ANO7	50636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242148731	242148731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ANO7	NM_001001891	exon12	c.T1271C	p.V424A	GCACCGTGTTCTT	.	32	7	24	0	.	92	C	242148731	T	C	242148731	3	2	177	1	0	0	0	0	1	0	0	0	702	1696	59	2	1389	2	ANO7	2	242148731	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	21811739	242148731	1050642	38	22397											
ATG4B	23192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242590731	242590731	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_178326	exon3	c.G165A	p.R55R	ATACAGGAAAAAC	.	78	21	83	0	.	.	A	242590731	G	A	242590731	2	1	177	1	0	0	0	0	0	0	0	1	1097	1165	41	3		3	ATG4B	2	242590731	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	442000	242590731	608642	39	22398											
CLASP2	23122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33638205	33638205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CLASP2	NM_015097	exon19	c.A1949G	p.D650G	TTACCATCCAGCT	.	358	134	334	0	.	93	C	33638205	T	C	33638205	3	2	177	1	0	0	0	0	1	0	0	0	3455	1435	50	2	2654	2	CLASP2	3	33638205	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10		33638205	164384225	40	22399											
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49153162	49153162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	USP19	NM_001199161	exon11	c.G1687T	p.A563S	CCGAGGCCAGGTG	.	135	43	116	2	.	663	A	49153162	C	A	49153162	3	1	177	1	0	0	0	0	1	0	0	0	17047	739	26	3	2646	3	USP19	3	49153162	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	15514957	49153162	148869268	41	22400											
RHOA	387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49400013	49400013	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RHOA	NM_001664	exon4	c.C324T	p.P108P	CACGTTGGGACAG	.	111	39	120	0	.	1273	A	49400013	G	A	49400013	2	1	177	1	0	0	0	0	0	0	0	1	13331	1335	47	3		3	RHOA	3	49400013	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	246851	49400013	148622417	42	22401											
GPR62	118442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51990739	51990739	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GPR62	NM_080865	exon1	c.C1071A	p.P357P	GAGCCCCGCATAC	.	130	44	96	0	.	91	A	51990739	C	A	51990739	2	1	177	1	0	0	0	0	0	0	0	1	6703	639	23	1		1	GPR62	3	51990739	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	2590726	51990739	146031691	43	22402											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97185271	97185271	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	EPHA6	NM_173655	exon5	c.A15C	p.P5P	CTCTCCATTTCAA	.	68	30	67	0	.	1561	C	97185271	A	C	97185271	2	2	177	1	0	0	0	0	0	0	0	1	5171	204	8	5		5	EPHA6	3	97185271	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	45194532	97185271	100837159	44	22403											
GABRR3	200959	broad.mit.edu;bcgsc.ca	37	3	97736568	97736568	+	Splice_Site	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GABRR3	NM_001105580	exon5	c.239-2A>T	.	AGACCCTTAAGAA	.	42	13	48	1	.	68	A	97736568	T	A	97736568	5	1	177	1	0	0	0	0	0	0	1	0	6178	1623	56	4	1193	4	GABRR3	3	97736568	Splice_Site	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	551297	97736568	100285862	45	22404											
IGSF11	152404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	118647489	118647489	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IGSF11	NM_001015887	exon3	c.C291T	p.T97T	TGGCATGGTGCCT	.	73	21	53	0	.	90	A	118647489	G	A	118647489	2	1	177	1	0	0	0	0	0	0	0	1	7598	1335	47	3		3	IGSF11	3	118647489	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	20910921	118647489	79374941	46	22405											
GPR156	165829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119885965	119885965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GPR156	NM_153002	exon9	c.G2359T	p.G787W	GCCCCCCAGTAGG	.	80	31	57	0	.	92	A	119885965	C	A	119885965	3	1	177	1	0	0	0	0	1	0	0	0	6661	594	21	3	89	3	GPR156	3	119885965	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1238476	119885965	78136465	47	22406											
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu	37	3	150421522	150421523	+	In_Frame_Ins	INS	-	-	CCTCCT	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FAM194A	NM_152394	exon1	c.164_165insAGGAGG	p.V55delinsEEV	TCCACCACCTCCT	.	40	14	33	0	.	93	CCTCCT	150421523	-	CCTCCT	150421522	7	5	177	1	0	1	1	0	0	0	0	0	5526	159	6	0	1883	0	FAM194A	3	150421522	In_Frame_Ins	INS	-	TCGA-MI-A75I-01A-11D-A32G-10	30535557	150421522	47600908	48	22407											
MRPL47	57129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	179310438	179310438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MRPL47	NM_020409	exon6	c.T623G	p.F208C	CTGAGAAAATGGT	.	78	27	57	0	.	90	C	179310438	A	C	179310438	3	2	177	1	0	0	0	0	1	0	0	0	9811	14	1	5	137	5	MRPL47	3	179310438	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	28888916	179310438	18711992	49	22408											
TNK2	10188	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195596397	195596397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TNK2	NM_001010938	exon12	c.G1748A	p.R583H	GGTGGGCGAGGTG	.	28	7	25	0	.	957	T	195596397	C	T	195596397	3	4	177	1	0	0	0	0	1	0	0	0	16315	768	27	1	1622	1	TNK2	3	195596397	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	16285959	195596397	2426033	50	22409											
IQCG	84223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197670818	197670818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IQCG	NM_032263	exon4	c.C113T	p.P38L	TCTTTAGGTATTC	.	79	33	107	0	.	90	A	197670818	G	A	197670818	3	1	177	1	0	0	0	0	1	0	0	0	7810	1000	35	3	1254	3	IQCG	3	197670818	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	2074421	197670818	351612	51	22410											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55963911	55963911	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KDR	NM_002253	exon18	c.C2532G	p.A844A	GCCAAAGGCACCA	.	63	20	47	0	.	2298	C	55963911	G	C	55963911	2	2	177	1	0	0	0	0	0	0	0	1	8139	987	35	4		4	KDR	4	55963911	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		55963911	135190365	52	22411											
ADH1A	124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100205700	100205700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ADH1A	NM_000667	exon5	c.C423A	p.F141L	GCCAAGGAAGTGG	.	139	32	112	0	.	227	T	100205700	G	T	100205700	3	4	177	1	0	0	0	0	1	0	0	0	307	1165	41	3	724	3	ADH1A	4	100205700	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	44241789	100205700	90948576	53	22412											
MTTP	4547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100532577	100532577	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MTTP	NM_000253	exon15	c.G1956A	p.Q652Q	CTTTCAGTACATT	.	150	57	153	0	.	93	A	100532577	G	A	100532577	2	1	177	1	0	0	0	0	0	0	0	1	9964	1020	36	3		3	MTTP	4	100532577	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	326877	100532577	90621699	54	22413											
H2AFZ	3015	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100870052	100870052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	H2AFZ	NM_002106	exon4	c.C241T	p.R81C	TAATACGCTTTAC	.	167	50	173	1	.	90	A	100870052	G	A	100870052	3	1	177	1	0	0	0	0	1	0	0	0	6931	1087	38	1	153	1	H2AFZ	4	100870052	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	337475	100870052	90284224	55	22414											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	156724875	156724875	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_000857	exon11	c.G1513T	p.E505X	ATGATGGAAATTG	.	59	22	48	0	.	.	T	156724875	G	T	156724875	4	4	177	1	0	0	0	0	0	1	0	0	6895	1175	41	3	1555	3	GUCY1B3	4	156724875	Nonsense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	55854823	156724875	34429401	56	22415											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158281153	158281153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GRIA2	NM_000826	exon13	c.T2149C	p.S717P	CGGAAGTCCAAAG	.	89	24	91	0	.	515	C	158281153	T	C	158281153	3	2	177	1	0	0	0	0	1	0	0	0	6768	1667	58	2	2199	2	GRIA2	4	158281153	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	1556278	158281153	32873123	57	22416											
C4orf45	152940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159956201	159956201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_152543	exon1	c.A48C	p.K16N	CATTTGTTTTCCC	.	87	33	82	0	.	.	G	159956201	T	G	159956201	3	3	177	1	0	0	0	0	1	0	0	0	2273	1722	60	5	532	5	C4orf45	4	159956201	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	1675048	159956201	31198075	58	22417											
C5orf55	116349	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	442609	442609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_138464	exon1	c.C329T	p.S110L	CCCAGTGACCCAC	.	37	16	19	0	.	.	A	442609	G	A	442609	3	1	177	1	0	0	0	0	1	0	0	0	2311	1294	45	3	34	3	C5orf55	5	442609	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		442609	180472651	59	22418											
CCNO	10309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54528358	54528358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CCNO	NM_021147	exon2	c.G398T	p.R133L	TTACAGCGGGATT	.	127	65	72	1	.	90	A	54528358	C	A	54528358	3	1	177	1	0	0	0	0	1	0	0	0	2933	768	27	1	662	1	CCNO	5	54528358	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	54085749	54528358	126386902	60	22419											
ACOT12	134526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80640019	80640019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ACOT12	NM_130767	exon9	c.T940G	p.Y314D	CCCGATAGCGTCT	.	196	51	155	0	.	92	C	80640019	A	C	80640019	3	2	177	1	0	0	0	0	1	0	0	0	150	420	15	5	755	5	ACOT12	5	80640019	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	26111661	80640019	100275241	61	22420											
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu	37	5	88057132	88057132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MEF2C	NM_001193350	exon4	c.A272G	p.K91R	AGGCCCTTCTTTC	.	82	5	63	0	.	704	C	88057132	T	C	88057132	3	2	177	1	0	0	0	0	1	0	0	0	9457	1609	56	2	1323	2	MEF2C	5	88057132	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	7417113	88057132	92858128	62	22421											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114506870	114506870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TRIM36	NM_001017397	exon2	c.C113T	p.T38M	TCCGTCGTCTTCC	.	129	56	94	0	.	725	A	114506870	G	A	114506870	3	1	177	1	0	0	0	0	1	0	0	0	16507	1145	40	1	2233	1	TRIM36	5	114506870	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	26449738	114506870	66408390	63	22422											
CXCL14	9547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	134914414	134914414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CXCL14	NM_004887	exon1	c.C91T	p.R31C	CCACACGCGCGGT	.	57	32	40	0	.	650	A	134914414	G	A	134914414	3	1	177	1	0	0	0	0	1	0	0	0	4082	1087	38	1	260	1	CXCL14	5	134914414	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	20407544	134914414	46000846	64	22423											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215935	140215935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PCDHA7	NM_031852	exon1	c.A1967T	p.E656V	ACGGGGAGCCCTC	.	78	39	54	0	.	94	T	140215935	A	T	140215935	3	4	177	1	0	0	0	0	1	0	0	0	11529	304	11	4	1969	4	PCDHA7	5	140215935	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	5301521	140215935	40699325	65	22424											
ARHGEF37	389337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148996303	148996303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ARHGEF37	NM_001001669	exon5	c.A632G	p.N211S	ATATCAATGAGTA	.	146	33	109	0	.	90	G	148996303	A	G	148996303	3	3	177	1	0	0	0	0	1	0	0	0	906	101	4	2	646	2	ARHGEF37	5	148996303	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	8780368	148996303	31918957	66	22425											
AGXT2L2	85007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177649437	177649437	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AGXT2L2	NM_153373	exon8	c.C846T	p.N282N	GTGGCCGTTGCCA	.	170	78	120	1	.	91	A	177649437	G	A	177649437	2	1	177	1	0	0	0	0	0	0	0	1	407	1136	40	1		1	AGXT2L2	5	177649437	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	28653134	177649437	3265823	67	22426											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7571705	7571705	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DSP	NM_004415	exon14	c.A1791T	p.S597S	AGGCTCAGAGATG	.	173	43	85	0	.	518	T	7571705	A	T	7571705	2	4	177	1	0	0	0	0	0	0	0	1	4781	175	7	4		4	DSP	6	7571705	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10		7571705	163543362	68	22427											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	15496837	15496837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	JARID2	NM_004973	exon7	c.A1381G	p.K461E	AAGATGAAAGGGG	.	67	15	12	0	.	228	G	15496837	A	G	15496837	3	3	177	1	0	0	0	0	1	0	0	0	7945	247	9	2	1407	2	JARID2	6	15496837	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	7925132	15496837	155618230	69	22428											
BTN3A1	11119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26409957	26409957	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	BTN3A1	NM_007048	exon5	c.A912G	p.T304T	AAGCACAAGAGGT	.	48	9	20	0	.	92	G	26409957	A	G	26409957	2	3	177	1	0	0	0	0	0	0	0	1	1562	117	5	2		2	BTN3A1	6	26409957	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	10913120	26409957	144705110	70	22429											
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29572726	29572726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GABBR1	NM_001470	exon21	c.T2479C	p.S827P	GGCTGGACAGAAT	.	74	27	48	0	.	521	G	29572726	A	G	29572726	3	3	177	1	0	0	0	0	1	0	0	0	6155	275	10	2	418	2	GABBR1	6	29572726	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	3162769	29572726	141542341	71	22430											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43214466	43214466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TTBK1	NM_032538	exon2	c.T68C	p.I23T	CCGACATCCTGCC	.	206	24	113	0	.	353	C	43214466	T	C	43214466	3	2	177	1	0	0	0	0	1	0	0	0	16673	1435	50	2	70	2	TTBK1	6	43214466	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	13641740	43214466	127900601	72	22431											
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46682256	46682256	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PLA2G7	NM_005084	exon5	c.T411A	p.P137P	CCTCAGAGGGGAA	.	121	23	58	0	.	90	T	46682256	A	T	46682256	2	4	177	1	0	0	0	0	0	0	0	1	12009	291	11	4		4	PLA2G7	6	46682256	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	3467790	46682256	124432811	73	22432											
COL9A1	1297	ucsc.edu;bcgsc.ca	37	6	71004221	71004221	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	COL9A1	NM_001851	exon5	c.G345T	p.T115T	AAACGTCGTCAAG	.	71	40	122	2	.	94	A	71004221	C	A	71004221	2	1	177	1	0	0	0	0	0	0	0	1	3707	871	31	1		1	COL9A1	6	71004221	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	24321965	71004221	100110846	74	22433											
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106536266	106536266	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PRDM1	NM_001198	exon2	c.A233T	p.Q78L	CGGTTCAGGCGGA	.	73	33	76	0	.	862	T	106536266	A	T	106536266	3	4	177	1	0	0	0	0	1	0	0	0	12450	188	7	4	239	4	PRDM1	6	106536266	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	35532045	106536266	64578801	75	22434											
WTAP	9589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160163131	160163131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	WTAP	NM_001270533	exon4	c.A98G	p.Y33C	AACAATATGAAGC	.	158	64	240	1	.	90	G	160163131	A	G	160163131	3	3	177	1	0	0	0	0	1	0	0	0	17406	449	16	2	108	2	WTAP	6	160163131	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	53626865	160163131	10951936	76	22435											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4854972	4854972	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RADIL	NM_018059	exon9	c.C2076G	p.H692Q	GAAGAAGTGCTCT	.	46	17	42	0	.	994	C	4854972	G	C	4854972	3	2	177	1	0	0	0	0	1	0	0	0	12997	1020	36	4	1179	4	RADIL	7	4854972	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		4854972	154283691	77	22436											
DGKB	1607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	14741336	14741336	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DGKB	NM_145695	exon6	c.C486T	p.D162D	ATCCGTGTCATAA	.	191	66	214	1	.	276	A	14741336	G	A	14741336	2	1	177	1	0	0	0	0	0	0	0	1	4466	1368	48	3		3	DGKB	7	14741336	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	9886364	14741336	144397327	78	22437											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17379497	17379497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AHR	NM_001621	exon10	c.A2048G	p.Q683R	TCAGTCAAGAGTT	.	52	19	71	0	.	227	G	17379497	A	G	17379497	3	3	177	1	0	0	0	0	1	0	0	0	416	130	5	2	2086	2	AHR	7	17379497	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	2638161	17379497	141759166	79	22438											
STK31	56164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23825118	23825118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	STK31	NM_031414	exon18	c.A2170G	p.M724V	CTTACAATGAGCT	.	90	21	100	0	.	338	G	23825118	A	G	23825118	3	3	177	1	0	0	0	0	1	0	0	0	15295	101	4	2	2240	2	STK31	7	23825118	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	6445621	23825118	135313545	80	22439											
DPY19L1	23333	broad.mit.edu;bcgsc.ca	37	7	34981498	34981498	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DPY19L1	NM_015283	exon19	c.1351-2A>G	.	ACCAGCTGAAAGA	.	307	92	278	1	.	68	C	34981498	T	C	34981498	5	2	177	1	0	0	0	0	0	0	1	0	4740	1594	55	2	698	2	DPY19L1	7	34981498	Splice_Site	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	11156380	34981498	124157165	81	22440											
AMPH	273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38457550	38457550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AMPH	NM_001635	exon17	c.G1273T	p.A425S	ATTCAGCCTTGGA	.	107	42	95	1	.	95	A	38457550	C	A	38457550	3	1	177	1	0	0	0	0	1	0	0	0	588	753	26	3	834	3	AMPH	7	38457550	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	3476052	38457550	120681113	82	22441											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	79082460	79082460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAGI2	NM_012301	exon1	c.A177C	p.K59N	CACCAATTTGCTG	.	79	22	72	0	.	461	G	79082460	T	G	79082460	3	3	177	1	0	0	0	0	1	0	0	0	9191	1490	52	5	4278	5	MAGI2	7	79082460	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	40624910	79082460	80056203	83	22442											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91669986	91669986	+	Splice_Site	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AKAP9	NM_005751	exon18	c.4693-2A>C	.	TATTAAAGATTCA	.	86	32	91	0	.	755	C	91669986	A	C	91669986	5	2	177	1	0	0	0	0	0	0	1	0	459	86	3	5	4761	5	AKAP9	7	91669986	Splice_Site	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	12587526	91669986	67468677	84	22443											
HEPACAM2	253012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92848433	92848433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	HEPACAM2	NM_001039372	exon2	c.G411T	p.K137N	TTGTATCTTCTGA	.	75	31	67	1	.	157	A	92848433	C	A	92848433	3	1	177	1	0	0	0	0	1	0	0	0	7053	912	32	3	1013	3	HEPACAM2	7	92848433	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1178447	92848433	66290230	85	22444											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100683826	100683826	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MUC17	NM_001040105	exon3	c.A9129T	p.E3043D	TAGTGAAGGAAGT	.	46	21	50	0	.	95	T	100683826	A	T	100683826	3	4	177	1	0	0	0	0	1	0	0	0	9974	69	3	4	9139	4	MUC17	7	100683826	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	7835393	100683826	58454837	86	22445											
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	140221816	140221816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DENND2A	NM_015689	exon16	c.T2750C	p.F917S	GTCAGGAACAAAG	.	77	29	66	0	.	138	G	140221816	A	G	140221816	3	3	177	1	0	0	0	0	1	0	0	0	4429	246	9	2	291	2	DENND2A	7	140221816	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	39537990	140221816	18916847	87	22446											
ZNF398	57541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	148876417	148876417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF398	NM_170686	exon6	c.T1453C	p.C485R	TTCTCCTGCCCTC	.	39	12	41	0	.	91	C	148876417	T	C	148876417	3	2	177	1	0	0	0	0	1	0	0	0	17882	1580	55	2	1475	2	ZNF398	7	148876417	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	8654601	148876417	10262246	88	22447											
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	150817090	150817090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AGAP3	NM_001042535	exon8	c.G986T	p.G329V	GCGGCGGCAGCGC	.	38	16	49	0	.	92	T	150817090	G	T	150817090	3	4	177	1	0	0	0	0	1	0	0	0	369	1203	42	3	1016	3	AGAP3	7	150817090	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	1940673	150817090	8321573	89	22448											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48715984	48715984	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PRKDC	.	.	.	.	CGTCTCTGGTTTT	.	101	13	59	0	.	1515	G	48715984	T	G	48715984	2	3	177	1	0	0	0	0	0	0	0	1	12521	1588	55	5		5	PRKDC	8	48715984	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10		48715984	97648038	90	22449											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55534100	55534100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RP1	NM_006269	exon2	c.C574A	p.Q192K	GTCATGCAGCGCC	.	92	44	61	0	.	102	A	55534100	C	A	55534100	3	1	177	1	0	0	0	0	1	0	0	0	13532	711	25	3	576	3	RP1	8	55534100	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	6818116	55534100	90829922	91	22450											
CSPP1	79848	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	68062027	68062027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CSPP1	NM_024790	exon16	c.A1970G	p.N657S	ATTTGAATAGGAT	.	320	17	181	1	.	138	G	68062027	A	G	68062027	3	3	177	1	0	0	0	0	1	0	0	0	3962	101	4	2	2145	2	CSPP1	8	68062027	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	12527927	68062027	78301995	92	22451											
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	86048194	86048194	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRRCC1	NM_033402	exon14	c.A2325G	p.Q775Q	GGCACAACAAGGT	.	235	39	133	0	.	90	G	86048194	A	G	86048194	2	3	177	1	0	0	0	0	0	0	0	1	9026	40	2	2		2	LRRCC1	8	86048194	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	17986167	86048194	60315828	93	22452											
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	89053953	89053953	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MMP16	NM_005941	exon10	c.A1560T	p.G520G	TGGATATCCAGGT	.	152	65	106	0	.	231	A	89053953	T	A	89053953	2	1	177	1	0	0	0	0	0	0	0	1	9655	1422	50	4		4	MMP16	8	89053953	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	3005759	89053953	57310069	94	22453											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	113314168	113314168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	CSMD3,NS,carcinoma,-1	CSMD3	NM_198123	exon53	c.C8294A	p.P2765H	TTTGGAGGTGTAG	.	104	17	41	0	.	1132	T	113314168	G	T	113314168	3	4	177	1	0	0	0	0	1	0	0	0	3946	1000	35	3	2905	3	CSMD3	8	113314168	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	24260215	113314168	33049854	95	22454											
SLC45A4	57210	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	142229096	142229096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SLC45A4	NM_001080431	exon4	c.G490T	p.G164W	CCAGCCCACCCAG	.	182	30	107	1	.	70	A	142229096	C	A	142229096	3	1	177	1	0	0	0	0	1	0	0	0	14643	594	21	3	1926	3	SLC45A4	8	142229096	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	28914928	142229096	4134926	96	22455											
ARC	23237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143695326	143695326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ARC	NM_015193	exon1	c.G307C	p.A103P	GGTTGGCGATGGT	.	38	6	20	0	.	135	G	143695326	C	G	143695326	3	3	177	1	0	0	0	0	1	0	0	0	841	768	27	4	887	4	ARC	8	143695326	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1466230	143695326	2668696	97	22456											
OR2S2	56656	broad.mit.edu;bcgsc.ca	37	9	35957695	35957695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OR2S2	NM_019897	exon1	c.C401T	p.S134F	ATCACGGAGTACC	.	29	4	56	0	.	68	A	35957695	G	A	35957695	3	1	177	1	0	0	0	0	1	0	0	0	11015	1174	41	3	562	3	OR2S2	9	35957695	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		35957695	105255736	98	22457											
RECK	8434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36122844	36122844	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RECK	NM_021111	exon21	c.A2718G	p.A906A	AGAAGCAGAGAAG	.	46	23	65	0	.	93	G	36122844	A	G	36122844	2	3	177	1	0	0	0	0	0	0	0	1	13200	175	7	2		2	RECK	9	36122844	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	165149	36122844	105090587	99	22458											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77397736	77397736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TRPM6	NM_017662	exon22	c.G2953C	p.A985P	CTATGGCCATGAT	.	59	38	105	0	.	335	G	77397736	C	G	77397736	3	3	177	1	0	0	0	0	1	0	0	0	16587	739	26	4	3187	4	TRPM6	9	77397736	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	41274892	77397736	63815695	100	22459											
ZNF189	7743	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104171388	104171388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF189	NM_003452	exon3	c.G1338C	p.Q446H	TATACAGCAGGAA	.	33	4	45	0	.	229	C	104171388	G	C	104171388	3	2	177	1	0	0	0	0	1	0	0	0	17751	962	34	4	1348	4	ZNF189	9	104171388	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	26773652	104171388	37042043	101	22460											
PNPLA7	375775	bcgsc.ca;mdanderson.org	37	9	140391674	140391674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PNPLA7	NM_001098537	exon18	c.G1978T	p.A660S	CCCCGGCCAGGCG	.	35	20	34	1	.	91	A	140391674	C	A	140391674	3	1	177	1	0	0	0	0	1	0	0	0	12170	739	26	3	2122	3	PNPLA7	9	140391674	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	36220286	140391674	821757	102	22461											
TUBB8	347688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93331	93331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TUBB8	NM_177987	exon4	c.A1001G	p.Q334R	TTATCTTGAATGT	.	95	7	100	0	.	69	C	93331	T	C	93331	3	2	177	1	0	0	0	0	1	0	0	0	16758	1812	63	2	337	2	TUBB8	10	93331	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10		93331	135441416	103	22462											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	329266	329266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DIP2C	NM_014974	exon35	c.C4240A	p.R1414S	CTGTGCGTGCCCA	.	100	37	69	0	.	156	T	329266	G	T	329266	3	4	177	1	0	0	0	0	1	0	0	0	4529	1145	40	1	442	1	DIP2C	10	329266	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	235935	329266	135205481	104	22463											
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22678098	22678098	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SPAG6	NM_172242	exon7	c.862delC	p.L288fs	TCACAGCTGGTAG	.	107	37	74	0	.	153	-	22678098	C	-	22678098	7	5	177	1	0	1	0	1	0	0	0	0	14982	796	28	0	888	0	SPAG6	10	22678098	Frame_Shift_Del	DEL	C	TCGA-MI-A75I-01A-11D-A32G-10	22348832	22678098	112856649	105	22464											
ENTPD1	953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97602202	97602202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ENTPD1	NM_001164178	exon4	c.C400A	p.Q134K	CAGCACCAAGAGA	.	135	52	129	0	.	93	A	97602202	C	A	97602202	3	1	177	1	0	0	0	0	1	0	0	0	5138	595	21	3	475	3	ENTPD1	10	97602202	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	74924104	97602202	37932545	106	22465											
PDZD7	79955	bcgsc.ca;mdanderson.org	37	10	102783278	102783278	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PDZD7	NM_001195263	exon4	c.C457T	p.L153L	TGGTCAGCACCTT	.	33	16	30	1	.	136	A	102783278	G	A	102783278	2	1	177	1	0	0	0	0	0	0	0	1	11704	962	34	3		3	PDZD7	10	102783278	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	5181076	102783278	32751469	107	22466											
EIF3A	8661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120801558	120801558	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	EIF3A	NM_003750	exon19	c.C3474T	p.P1158P	CCGTCTGGGAAAC	.	93	42	80	1	.	226	A	120801558	G	A	120801558	2	1	177	1	0	0	0	0	0	0	0	1	5012	1335	47	3		3	EIF3A	10	120801558	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	18018280	120801558	14733189	108	22467											
ZRANB1	54764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126631850	126631850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZRANB1	NM_017580	exon1	c.A788T	p.D263V	AGACTGATTGGCT	.	42	15	38	0	.	660	T	126631850	A	T	126631850	3	4	177	1	0	0	0	0	1	0	0	0	18219	333	12	4	790	4	ZRANB1	10	126631850	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	5830292	126631850	8902897	109	22468											
C10orf90	118611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128118392	128118392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C10orf90	NM_001004298	exon7	c.G1925A	p.C642Y	GAAATGCACCGTT	.	95	33	90	1	.	92	T	128118392	C	T	128118392	3	4	177	1	0	0	0	0	1	0	0	0	1623	710	25	3	186	3	C10orf90	10	128118392	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1486542	128118392	7416355	110	22469											
KRTAP5-2	440021	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	1619366	1619366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KRTAP5-2	NM_001004325	exon1	c.G115A	p.G39S	CAGAGCCACAGCC	.	38	13	40	0	.	44	T	1619366	C	T	1619366	3	4	177	1	0	0	0	0	1	0	0	0	8561	594	21	3	422	3	KRTAP5-2	11	1619366	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10		1619366	133387150	111	22470											
LSP1	4046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1887904	1887904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LSP1	NM_001242932	exon2	c.T200C	p.V67A	AATGTGTTTTCCC	.	60	20	70	0	.	90	C	1887904	T	C	1887904	3	2	177	1	0	0	0	0	1	0	0	0	9063	1740	60	2		2	LSP1	11	1887904	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	268538	1887904	133118612	112	22471											
OR8K3	219473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56085886	56085886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OR8K3	NM_001005202	exon1	c.A104G	p.Y35C	TGATCTATGTGAT	.	67	36	80	0	.	70	G	56085886	A	G	56085886	3	3	177	1	0	0	0	0	1	0	0	0	11244	449	16	2	106	2	OR8K3	11	56085886	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	54197982	56085886	78920630	113	22472											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616284	92616284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FAT3	NM_001008781	exon23	c.T12662C	p.V4221A	GCAACGTCTACCA	.	46	13	31	0	.	73	C	92616284	T	C	92616284	3	2	177	1	0	0	0	0	1	0	0	0	5691	1667	58	2	12752	2	FAT3	11	92616284	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	36530398	92616284	42390232	114	22473											
GRIA4	2893	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	105797567	105797567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GRIA4	NM_001077243	exon13	c.C1948G	p.R650G	GTTGAGCGAATGG	.	144	54	129	1	.	230	G	105797567	C	G	105797567	3	3	177	1	0	0	0	0	1	0	0	0	6770	760	27	4	2031	4	GRIA4	11	105797567	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	13181283	105797567	29208949	115	22474											
PKNOX2	63876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125267956	125267956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PKNOX2	NM_022062	exon7	c.C586G	p.Q196E	CACTCACAGGTAA	.	89	30	68	0	.	93	G	125267956	C	G	125267956	3	3	177	1	0	0	0	0	1	0	0	0	11983	479	17	4	600	4	PKNOX2	11	125267956	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	19470389	125267956	9738560	116	22475											
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132205003	132205003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NTM	NM_001144058	exon8	c.T1031A	p.L344Q	GGCTGCTGCCTCT	.	35	20	29	0	.	95	A	132205003	T	A	132205003	3	1	177	1	0	0	0	0	1	0	0	0	10699	1580	55	4	1164	4	NTM	11	132205003	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	6937047	132205003	2801513	117	22476											
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	132526997	132526997	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OPCML	NM_002545	exon2	c.385delC	p.H129fs	TTAGGTGAACCCG	.	147	45	135	0	.	93	-	132526997	G	-	132526997	7	5	177	1	0	1	0	1	0	0	0	0	10874	1290	45	0	676	0	OPCML	11	132526997	Frame_Shift_Del	DEL	G	TCGA-MI-A75I-01A-11D-A32G-10	321994	132526997	2479519	118	22477											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134076627	134076627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NCAPD3	NM_015261	exon8	c.G883T	p.V295F	TGATGACCTAGAA	.	81	43	70	0	.	229	A	134076627	C	A	134076627	3	1	177	1	0	0	0	0	1	0	0	0	10206	521	18	3	3725	3	NCAPD3	11	134076627	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1549630	134076627	929889	119	22478											
NECAP1	25977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8242584	8242584	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NECAP1	NM_015509	exon2	c.A148T	p.T50S	CGAATCACTTCAA	.	52	22	76	0	.	91	T	8242584	A	T	8242584	3	4	177	1	0	0	0	0	1	0	0	0	10307	159	6	4	154	4	NECAP1	12	8242584	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10		8242584	125609311	120	22479											
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29628110	29628110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OVCH1	NM_183378	exon14	c.G1484T	p.G495V	AACATTCCACAAA	.	143	42	135	0	.	210	A	29628110	C	A	29628110	3	1	177	1	0	0	0	0	1	0	0	0	11323	855	30	3	1980	3	OVCH1	12	29628110	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	21385526	29628110	104223785	121	22480	143	2									
OVCH1	341350	broad.mit.edu;ucsc.edu	37	12	29628111	29628111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OVCH1	NM_183378	exon14	c.G1483T	p.G495X	ACATTCCACAAAG	.	142	43	133	1	.	210	A	29628111	C	A	29628111	4	1	177	1	0	0	0	0	0	1	0	0	11323	603	21	3	1981	3	OVCH1	12	29628111	Nonsense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1	29628111	104223784	122	22481	143	2									
CCDC65	85478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49298898	49298898	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CCDC65	NM_033124	exon2	c.300+2T>C	.	TCAAGGTAGGCAC	.	37	18	52	0	.	92	C	49298898	T	C	49298898	5	2	177	1	0	0	0	0	0	0	1	0	2837	1652	57	2	308	2	CCDC65	12	49298898	Splice_Site	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	19670787	49298898	84552997	123	22482											
HOXC8	3224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54403335	54403335	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	HOXC8	NM_022658	exon1	c.T267C	p.Y89Y	ATTCTATGGCTAC	.	66	22	65	0	.	91	C	54403335	T	C	54403335	2	2	177	1	0	0	0	0	0	0	0	1	7316	1471	51	2		2	HOXC8	12	54403335	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	5104437	54403335	79448560	124	22483											
GLS2	27165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56868406	56868406	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GLS2	NM_013267	exon12	c.T1146C	p.S382S	TTCAGCACTCAGC	.	28	10	25	0	.	91	G	56868406	A	G	56868406	2	3	177	1	0	0	0	0	0	0	0	1	6464	156	6	2		2	GLS2	12	56868406	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	2465071	56868406	76983489	125	22484											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57603645	57603645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRP1	NM_002332	exon80	c.C12433T	p.P4145S	AAGCAGCCCGAAG	.	26	10	28	0	.	596	T	57603645	C	T	57603645	3	4	177	1	0	0	0	0	1	0	0	0	8951	739	26	3	12751	3	LRP1	12	57603645	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	735239	57603645	76248250	126	22485											
MDM1	56890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68715374	68715374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MDM1	NM_017440	exon6	c.C836T	p.A279V	ATCTCTGCTTCCA	.	89	20	73	0	.	95	A	68715374	G	A	68715374	3	1	177	1	0	0	0	0	1	0	0	0	9412	1319	46	3	1344	3	MDM1	12	68715374	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	11111729	68715374	65136521	127	22486											
C12orf42	374470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	103762676	103762676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C12orf42	NM_001099336	exon4	c.T248A	p.L83Q	AAATTCAGAAAGT	.	242	72	256	0	.	91	T	103762676	A	T	103762676	3	4	177	1	0	0	0	0	1	0	0	0	1688	188	7	4	846	4	C12orf42	12	103762676	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	35047302	103762676	30089219	128	22487											
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108589818	108589818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	WSCD2	NM_014653	exon2	c.T209C	p.M70T	GTGACATGCATCT	.	48	17	63	0	.	136	C	108589818	T	C	108589818	3	2	177	1	0	0	0	0	1	0	0	0	17404	1464	51	2	211	2	WSCD2	12	108589818	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	4827142	108589818	25262077	129	22488											
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21175874	21175874	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IFT88	NM_175605	exon14	c.A870G	p.T290T	AGTTACATTTATT	.	180	53	208	0	.	91	G	21175874	A	G	21175874	2	3	177	1	0	0	0	0	0	0	0	1	7566	204	8	2		2	IFT88	13	21175874	Silent	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10		21175874	93994004	130	22489											
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111090978	111090978	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	COL4A2	NM_001846	exon15	c.A875C	p.K292T	CCTTGAAGGGAGA	.	119	39	114	0	.	95	C	111090978	A	C	111090978	3	2	177	1	0	0	0	0	1	0	0	0	3690	72	3	5	929	5	COL4A2	13	111090978	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	89915104	111090978	4078900	131	22490											
SRP54	6729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35492189	35492189	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SRP54	NM_003136	exon14	c.G1230C	p.S410S	AGGATCGGGTGTA	.	70	24	77	0	.	227	C	35492189	G	C	35492189	2	2	177	1	0	0	0	0	0	0	0	1	15154	1103	39	4		4	SRP54	14	35492189	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		35492189	71857351	132	22491											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356423	42356423	+	Silent	SNP	C	C	A	rs140770648		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRFN5	NM_152447	exon3	c.C595A	p.R199R	ATGACTCGGTTAG	.	52	17	55	0	C|0.999;A|0.001	97	A	42356423	C	A	42356423	2	1	177	1	0	0	0	0	0	0	0	1	8941	875	31	1		1	LRFN5	14	42356423	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	6864234	42356423	64993117	133	22492											
ABHD12B	145447	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51368576	51368576	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ABHD12B	NM_001206673	exon10	c.T810A	p.R270R	TTTACGTACACTT	.	319	99	330	2	.	153	A	51368576	T	A	51368576	2	1	177	1	0	0	0	0	0	0	0	1	77	1625	57	4		4	ABHD12B	14	51368576	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	9012153	51368576	55980964	134	22493											
MTA1	9112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105931048	105931048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MTA1	NM_004689	exon15	c.C1382G	p.P461R	GGAGCCCCAAGTT	.	81	24	49	0	.	135	G	105931048	C	G	105931048	3	3	177	1	0	0	0	0	1	0	0	0	9908	623	22	4	1440	4	MTA1	14	105931048	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	54562472	105931048	1418492	135	22494											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	30010589	30010589	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TJP1	NM_003257	exon21	c.G3757T	p.E1253X	CCTCTTCTTCGGT	.	93	29	75	0	.	95	A	30010589	C	A	30010589	4	1	177	1	0	0	0	0	0	1	0	0	15926	922	32	3	1521	3	TJP1	15	30010589	Nonsense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10		30010589	72520803	136	22495											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48764821	48764821	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FBN1	NM_000138	exon35	c.C4263T	p.L1421L	TGCATTGAGGCAC	.	67	17	57	0	.	92	A	48764821	G	A	48764821	2	1	177	1	0	0	0	0	0	0	0	1	5702	1277	45	3		3	FBN1	15	48764821	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	18754232	48764821	53766571	137	22496											
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55912922	55912922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PRTG	NM_173814	exon19	c.A3137G	p.K1046R	TTGTTTTTAATTA	.	133	42	107	0	.	92	C	55912922	T	C	55912922	3	2	177	1	0	0	0	0	1	0	0	0	12638	1841	64	2	323	2	PRTG	15	55912922	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	7148101	55912922	46618470	138	22497											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79327481	79327481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RASGRF1	NM_001145648	exon6	c.T950A	p.L317Q	AGGACCAGCGTGG	.	45	21	48	0	.	662	T	79327481	A	T	79327481	3	4	177	1	0	0	0	0	1	0	0	0	13072	188	7	4	2963	4	RASGRF1	15	79327481	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	23414559	79327481	23203911	139	22498											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79339166	79339166	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RASGRF1	NM_001145648	exon5	c.T800G	p.L267R	GGGCGCAGGAAAT	.	46	20	38	0	.	662	C	79339166	A	C	79339166	3	2	177	1	0	0	0	0	1	0	0	0	13072	188	7	5	3117	5	RASGRF1	15	79339166	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	11685	79339166	23192226	140	22499											
TM6SF1	53346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	83795555	83795555	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TM6SF1	NM_023003	exon8	c.C757T	p.Q253X	CAATTTCAAGAGC	.	98	40	62	0	.	91	T	83795555	C	T	83795555	4	4	177	1	0	0	0	0	0	1	0	0	15969	827	29	3	787	3	TM6SF1	15	83795555	Nonsense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	4456389	83795555	18735837	141	22500											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2122984	2122984	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TSC2	NM_001114382	exon21	c.2355delG	p.Q785fs	CAAACAGGTAGGA	.	36	15	36	0	.	1908	-	2122984	G	-	2122984	7	5	177	1	0	1	0	1	0	0	0	0	16603	1014	35	0	2433	0	TSC2	16	2122984	Frame_Shift_Del	DEL	G	TCGA-MI-A75I-01A-11D-A32G-10		2122984	88231769	142	22501											
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20554485	20554485	+	Missense_Mutation	SNP	G	G	A	rs143500332		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ACSM2B	NM_182617	exon12	c.C1381T	p.R461W	CTGCCCGTCCCAT	.	155	47	263	0	G|1.000;A|0.000	94	A	20554485	G	A	20554485	3	1	177	1	0	0	0	0	1	0	0	0	184	1144	40	1	368	1	ACSM2B	16	20554485	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	18431501	20554485	69800268	143	22502											
EEF2K	29904	ucsc.edu;bcgsc.ca	37	16	22291635	22291635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	EEF2K	NM_013302	exon17	c.C2006T	p.A669V	TGCTGGCCAGGGA	.	31	4	49	0	.	856	T	22291635	C	T	22291635	3	4	177	1	0	0	0	0	1	0	0	0	4930	739	26	3	2068	3	EEF2K	16	22291635	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1737150	22291635	68063118	144	22503											
ZKSCAN2	342357	broad.mit.edu;bcgsc.ca	37	16	25258229	25258229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZKSCAN2	NM_001012981	exon5	c.G1288A	p.A430T	CACGGGCTGCAGG	.	85	5	114	0	.	138	T	25258229	C	T	25258229	3	4	177	1	0	0	0	0	1	0	0	0	17684	797	28	3	1627	3	ZKSCAN2	16	25258229	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	2966594	25258229	65096524	145	22504											
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55725901	55725901	+	Silent	SNP	C	C	T	rs180935423		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SLC6A2	NM_001172501	exon6	c.C855T	p.P285P	GCTGCCCGGAGCC	.	30	18	59	0	C|0.999;T|0.001	526	T	55725901	C	T	55725901	2	4	177	1	0	0	0	0	0	0	0	1	14683	639	23	1		1	SLC6A2	16	55725901	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	30467672	55725901	34628852	146	22505											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	65025685	65025685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CDH11	NM_001797	exon6	c.797delC	p.P266fs	AACTTTGGTGGGT	.	52	22	78	0	.	852	-	65025685	G	-	65025685	7	5	177	1	0	1	0	1	0	0	0	0	3097	1348	47	0	1625	0	CDH11	16	65025685	Frame_Shift_Del	DEL	G	TCGA-MI-A75I-01A-11D-A32G-10	9299784	65025685	25329068	147	22506											
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3779538	3779538	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CAMKK1	NM_172207	exon11	c.C1089A	p.S363S	CTGGCCGGAATCA	.	38	23	47	0	.	334	T	3779538	G	T	3779538	2	4	177	1	0	0	0	0	0	0	0	1	2606	1103	39	1		1	CAMKK1	17	3779538	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		3779538	77415672	148	22507											
KIF1C	10749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4905414	4905414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KIF1C	NM_006612	exon6	c.G424A	p.V142M	TACTCTGTGGAGG	.	43	20	76	0	.	92	A	4905414	G	A	4905414	3	1	177	1	0	0	0	0	1	0	0	0	8285	1377	48	3	438	3	KIF1C	17	4905414	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	1125876	4905414	76289796	149	22508											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G473A	p.R158H	ATGGCGCGGACGC	.	41	18	60	1	.	70225	T	7578457	C	T	7578457	3	4	177	1	0	0	0	0	1	0	0	0	16378	768	27	1	825	1	TP53	17	7578457	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	2673043	7578457	73616753	150	22509											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27420004	27420004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MYO18A	NM_078471	exon33	c.T4942G	p.F1648V	ACTCAAAGTCCCG	.	36	9	37	0	.	22	C	27420004	A	C	27420004	3	2	177	1	0	0	0	0	1	0	0	0	10065	72	3	5	1262	5	MYO18A	17	27420004	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	19841547	27420004	53775206	151	22510											
LRRC37B	114659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	30348372	30348372	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRRC37B	NM_052888	exon1	c.G207T	p.P69P	AGCCCCGGGGGAC	.	87	6	67	0	.	92	T	30348372	G	T	30348372	2	4	177	1	0	0	0	0	0	0	0	1	8994	1103	39	1		1	LRRC37B	17	30348372	Silent	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	2928368	30348372	50846838	152	22511											
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46685380	46685380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	HOXB7	NM_004502	exon2	c.C478T	p.R160C	GGTAGCGATTGTA	.	105	24	66	0	.	90	A	46685380	G	A	46685380	3	1	177	1	0	0	0	0	1	0	0	0	7306	1058	37	1	179	1	HOXB7	17	46685380	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	16337008	46685380	34509830	153	22512											
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56348028	56348028	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MPO	NM_000250	exon12	c.G2227C	p.E743Q	AGGCTTCCCTCCA	.	104	23	80	0	.	156	G	56348028	C	G	56348028	3	3	177	1	0	0	0	0	1	0	0	0	9732	864	30	4	14	4	MPO	17	56348028	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	9662648	56348028	24847182	154	22513											
TBX2	6909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59485645	59485645	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBX2	NM_005994	exon7	c.C1917T	p.T639T	CACCACCGGGCTG	.	187	54	96	0	.	226	T	59485645	C	T	59485645	2	4	177	1	0	0	0	0	0	0	0	1	15652	639	23	1		1	TBX2	17	59485645	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	3137617	59485645	21709565	155	22514											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80040839	80040839	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FASN	NM_004104	exon33	c.G5718A	p.Q1906Q	CCCACGCTGTATC	.	68	21	40	0	.	90	T	80040839	C	T	80040839	2	4	177	1	0	0	0	0	0	0	0	1	5683	796	28	3		3	FASN	17	80040839	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	20555194	80040839	1154371	156	22515											
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80851463	80851463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBCD	NM_005993	exon17	c.A1604T	p.D535V	CAGCTGACTATTT	.	430	231	312	0	.	22	T	80851463	A	T	80851463	3	4	177	1	0	0	0	0	1	0	0	0	15630	275	10	4	1670	4	TBCD	17	80851463	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	810624	80851463	343747	157	22516											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7033066	7033066	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LAMA1	NM_005559	exon15	c.A2080T	p.S694C	TAGAGCTGGCTAT	.	36	11	51	0	.	149	A	7033066	T	A	7033066	3	1	177	1	0	0	0	0	1	0	0	0	8605	1580	55	4	7343	4	LAMA1	18	7033066	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10		7033066	71044182	158	22517											
TXNDC2	84203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9886946	9886946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TXNDC2	NM_001098529	exon2	c.T470C	p.I157T	AACCCATCCAGCC	.	140	55	138	0	.	92	C	9886946	T	C	9886946	3	2	177	1	0	0	0	0	1	0	0	0	16794	1435	50	2	476	2	TXNDC2	18	9886946	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	2853880	9886946	68190302	159	22518											
DIRAS1	148252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2717599	2717599	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DIRAS1	NM_145173	exon2	c.C206G	p.P69R	ATGGCCGGGAACT	.	38	15	31	0	.	659	C	2717599	G	C	2717599	3	2	177	1	0	0	0	0	1	0	0	0	4530	1116	39	4	394	4	DIRAS1	19	2717599	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		2717599	56411384	160	22519											
ZNF266	10781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9525003	9525003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF266	NM_001271314	exon11	c.G598A	p.A200T	GCACAGCAAGGTC	.	73	25	67	0	.	91	T	9525003	C	T	9525003	3	4	177	1	0	0	0	0	1	0	0	0	17802	710	25	3	1055	3	ZNF266	19	9525003	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	6807404	9525003	49603980	161	22520											
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11598499	11598499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF653	NM_138783	exon4	c.C779T	p.P260L	CACAGCGGGGTAC	.	144	55	119	0	.	90	A	11598499	G	A	11598499	3	1	177	1	0	0	0	0	1	0	0	0	18063	1116	39	1	1092	1	ZNF653	19	11598499	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	2073496	11598499	47530484	162	22521											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13365942	13365942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CACNA1A	NM_001127221	exon29	c.G4725A	p.M1575I	GGCGATCATGGCC	.	24	9	26	0	.	67	T	13365942	C	T	13365942	3	4	177	1	0	0	0	0	1	0	0	0	2538	826	29	3	2976	3	CACNA1A	19	13365942	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	1767443	13365942	45763041	163	22522											
PKN1	5585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14581098	14581098	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PKN1	NM_213560	exon19	c.A2435T	p.Y812F	TGCTCTACGAGAT	.	19	5	26	0	.	1481	T	14581098	A	T	14581098	3	4	177	1	0	0	0	0	1	0	0	0	11979	391	14	4	2534	4	PKN1	19	14581098	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	1215156	14581098	44547885	164	22523											
CALR3	125972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16601349	16601349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CALR3	NM_145046	exon3	c.G226A	p.A76T	AGATGGCATAGAA	.	92	30	93	0	.	90	T	16601349	C	T	16601349	3	4	177	1	0	0	0	0	1	0	0	0	2593	710	25	3	956	3	CALR3	19	16601349	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	2020251	16601349	42527634	165	22524											
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35786342	35786342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAG	NM_080600	exon3	c.T31C	p.W11R	CTGTTCTGGATTA	.	59	21	65	0	.	947	C	35786342	T	C	35786342	3	2	177	1	0	0	0	0	1	0	0	0	9162	1580	55	2	33	2	MAG	19	35786342	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	19184993	35786342	23342641	166	22525											
COX6B1	1340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36142167	36142167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	COX6B1	NM_001863	exon2	c.A22G	p.K8E	GAGACCAAAATCA	.	79	19	70	0	.	226	G	36142167	A	G	36142167	3	3	177	1	0	0	0	0	1	0	0	0	3776	131	5	2	24	2	COX6B1	19	36142167	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	355825	36142167	22986816	167	22526											
ZNF571	51276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38056846	38056846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF571	NM_016536	exon4	c.A484T	p.N162Y	CTATATTATGATT	.	79	29	65	0	.	90	A	38056846	T	A	38056846	3	1	177	1	0	0	0	0	1	0	0	0	18000	1754	61	4	1349	4	ZNF571	19	38056846	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	1914679	38056846	21072137	168	22527											
DEDD2	162989	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	42713936	42713936	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DEDD2	NM_133328	exon4	c.A505T	p.R169X	GCCGTCTGGCACC	.	37	11	26	0	.	90	A	42713936	T	A	42713936	4	1	177	1	0	0	0	0	0	1	0	0	4385	1588	55	4	483	4	DEDD2	19	42713936	Nonsense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	4657090	42713936	16415047	169	22528											
ZNF468	90333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	53352366	53352366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF468	NM_001008801	exon3	c.A116C	p.E39A	TAATTCTCCAGCA	.	17	7	13	0	.	92	G	53352366	T	G	53352366	3	3	177	1	0	0	0	0	1	0	0	0	17925	1551	54	5	1460	5	ZNF468	19	53352366	Missense_Mutation	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	10638430	53352366	5776617	170	22529											
KIR2DL1	3802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55284949	55284949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KIR2DL1	NM_014218	exon3	c.G235A	p.G79R	CATGATGGGGTCT	.	26	21	33	0	.	90	A	55284949	G	A	55284949	3	1	177	1	0	0	0	0	1	0	0	0	8316	1348	47	3	245	3	KIR2DL1	19	55284949	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	1932583	55284949	3844034	171	22530											
ZNF274	10782	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58718123	58718123	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF274	.	.	.	.	TGGATCCTCTTCC	.	106	44	87	0	.	91	G	58718123	C	G	58718123	3	3	177	1	0	0	0	0	1	0	0	0	17806	681	24	4	307	4	ZNF274	19	58718123	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	3433174	58718123	410860	172	22531											
FERMT1	55612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6057861	6057861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FERMT1	NM_017671	exon15	c.G1993A	p.D665N	CCTCATCGAGTGT	.	74	30	56	0	.	495	T	6057861	C	T	6057861	3	4	177	1	0	0	0	0	1	0	0	0	5817	884	31	1	44	1	FERMT1	20	6057861	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10		6057861	56967659	173	22532											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	9546703	9546703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PAK7	NM_177990	exon5	c.T1319C	p.V440A	GGGCTGACCACCA	.	59	18	73	0	.	1434	G	9546703	A	G	9546703	3	3	177	1	0	0	0	0	1	0	0	0	11405	275	10	2	864	2	PAK7	20	9546703	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	3488842	9546703	53478817	174	22533											
CDK5RAP1	51654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31967440	31967440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CDK5RAP1	NM_016408	exon8	c.G934C	p.E312Q	GGACCTCCGAATT	.	107	44	90	0	.	230	G	31967440	C	G	31967440	3	3	177	1	0	0	0	0	1	0	0	0	3145	864	30	4	857	4	CDK5RAP1	20	31967440	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	22420737	31967440	31058080	175	22534											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47267445	47267445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PREX1	NM_020820	exon23	c.C2804T	p.A935V	TAGCAGGCAATCC	.	44	14	48	0	.	231	A	47267445	G	A	47267445	3	1	177	1	0	0	0	0	1	0	0	0	12476	1203	42	3	2247	3	PREX1	20	47267445	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	15300005	47267445	15758075	176	22535											
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	11049620	11049620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_182481	exon4	c.G281A	p.R94Q	TTCCTTCGCTATA	.	551	31	545	0	.	.	T	11049620	C	T	11049620	3	4	177	1	0	0	0	0	1	0	0	0	1293	898	31	1	52	1	BAGE3	21	11049620	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10		11049620	37080275	177	22536											
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17250204	17250204	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	USP25	NM_013396	exon23	c.C2889T	p.V963V	TATTGTCCCATTT	.	167	59	170	0	.	663	T	17250204	C	T	17250204	2	4	177	1	0	0	0	0	0	0	0	1	17053	842	30	3		3	USP25	21	17250204	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	6200584	17250204	30879691	178	22537											
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28210528	28210528	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ADAMTS1	NM_006988	exon9	c.G2274A	p.Q758Q	TCCCCTCTGGTTC	.	68	29	64	0	.	272	T	28210528	C	T	28210528	2	4	177	1	0	0	0	0	0	0	0	1	255	912	32	3		3	ADAMTS1	21	28210528	Silent	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	10960324	28210528	19919367	179	22538											
C2CD2	25966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43332526	43332526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C2CD2	NM_015500	exon7	c.G868T	p.V290L	GCTGCACGACGCA	.	48	20	46	0	.	91	A	43332526	C	A	43332526	3	1	177	1	0	0	0	0	1	0	0	0	2152	536	19	1	1254	1	C2CD2	21	43332526	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	15121998	43332526	4797369	180	22539											
APOBEC3B	9582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	39388141	39388141	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	APOBEC3B	NM_004900	exon7	c.1121delG	p.R374fs	GGCTGCGGGCCAT	.	92	20	78	0	.	227	-	39388141	G	-	39388141	7	5	177	1	0	1	0	1	0	0	0	0	790	1116	39	0	1147	0	APOBEC3B	22	39388141	Frame_Shift_Del	DEL	G	TCGA-MI-A75I-01A-11D-A32G-10		39388141	11916425	181	22540											
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30260451	30260451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAGEB4	NM_002367	exon1	c.C199A	p.P67T	GAGCCACCCACCA	.	64	45	58	0	.	131	A	30260451	C	A	30260451	3	1	177	1	0	0	0	0	1	0	0	0	9178	507	18	3	201	3	MAGEB4	23	30260451	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10		30260451	125010109	182	22541											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44870266	44870266	+	Splice_Site	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KDM6A	NM_021140	exon5	c.443+2T>G	.	CAGTGGTAAGTTG	.	40	26	49	0	.	2748	G	44870266	T	G	44870266	5	3	177	1	0	0	0	0	0	0	1	0	8137	1652	57	5	463	5	KDM6A	23	44870266	Splice_Site	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	14609815	44870266	110400294	183	22542											
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69595074	69595074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KIF4A	NM_012310	exon17	c.A1799G	p.K600R	GCCGCAAACGTCT	.	70	54	62	0	.	134	G	69595074	A	G	69595074	3	3	177	1	0	0	0	0	1	0	0	0	8303	14	1	2	1861	2	KIF4A	23	69595074	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	24724808	69595074	85675486	184	22543											
CXCR3	2833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70836903	70836903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CXCR3	NM_001142797	exon2	c.T560A	p.L187H	AGCAGGAGGGCTC	.	17	13	28	0	.	660	T	70836903	A	T	70836903	3	4	177	1	0	0	0	0	1	0	0	0	4092	304	11	4	691	4	CXCR3	23	70836903	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	1241829	70836903	84433657	185	22544											
TBX22	50945	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79283541	79283541	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBX22	NM_016954	exon7	c.T915G	p.T305T	TTTCACTCTCGAT	.	55	9	63	0	.	628	G	79283541	T	G	79283541	2	3	177	1	0	0	0	0	0	0	0	1	15655	1538	54	5		5	TBX22	23	79283541	Silent	SNP	T	TCGA-MI-A75I-01A-11D-A32G-10	8446638	79283541	75987019	186	22545											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	109695556	109695556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RGAG1	NM_020769	exon3	c.A1711G	p.T571A	GCCATGACTTCTG	.	63	6	70	0	.	132	G	109695556	A	G	109695556	3	3	177	1	0	0	0	0	1	0	0	0	13274	275	10	2	1713	2	RGAG1	23	109695556	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	30412015	109695556	45575004	187	22546											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148072845	148072845	+	Missense_Mutation	SNP	G	G	C	rs149966195	alternate_allele	TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AFF2	NM_002025	exon21	c.G3919C	p.D1307H	CGCATCGATGCCC	.	34	25	28	0	G|1.000;A|0.000	135	C	148072845	G	C	148072845	3	2	177	1	0	0	0	0	1	0	0	0	357	1058	37	4	4056	4	AFF2	23	148072845	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10	38377289	148072845	7197715	188	22547											
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153698841	153698841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PLXNA3	NM_017514	exon30	c.C5043A	p.H1681Q	AGCCCACCGGGGC	.	94	68	105	0	.	132	A	153698841	C	A	153698841	3	1	177	1	0	0	0	0	1	0	0	0	12121	506	18	3	5157	3	PLXNA3	23	153698841	Missense_Mutation	SNP	C	TCGA-MI-A75I-01A-11D-A32G-10	5625996	153698841	1571719	189	22548											
DDX3Y	8653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	15024659	15024659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DDX3Y	NM_004660	exon5	c.G302T	p.S101I	GACGGAGTGACTA	.	109	85	97	0	.	136	T	15024659	G	T	15024659	3	4	177	1	0	0	0	0	1	0	0	0	4359	1029	36	3	320	3	DDX3Y	24	15024659	Missense_Mutation	SNP	G	TCGA-MI-A75I-01A-11D-A32G-10		15024659	44348907	190	22549											
NLGN4Y	22829	hgsc.bcm.edu;bcgsc.ca	37	Y	16941900	16941900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_014893	exon5	c.A1102G	p.M368V	GACATCATGCTGG	.	199	106	188	1	.	.	G	16941900	A	G	16941900	3	3	177	1	0	0	0	0	1	0	0	0	10465	217	8	2	1270	2	NLGN4Y	24	16941900	Missense_Mutation	SNP	A	TCGA-MI-A75I-01A-11D-A32G-10	1917241	16941900	42431666	191	22550											
LZIC	84328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9995639	9995639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LZIC	NM_032368	exon3	c.C148G	p.L50V	GCTCCAGAGTTTC	.	78	28	70	0	.	90	C	9995639	G	C	9995639	3	2	178	1	0	0	0	0	1	0	0	0	9135	933	33	4	444	4	LZIC	1	9995639	Missense_Mutation	SNP	G	TCGA-MR-A520-01A-11D-A25V-10		9995639	239254982	1	22551											
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15988085	15988085	+	Silent	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	RSC1A1	NM_006511	exon1	c.C1722G	p.A574A	TCCTGCCACAGAT	.	250	79	239	0	.	91	G	15988085	C	G	15988085	2	3	178	1	0	0	0	0	0	0	0	1	13698	581	21	4		4	RSC1A1	1	15988085	Silent	SNP	C	TCGA-MR-A520-01A-11D-A25V-10	5992446	15988085	233262536	2	22552											
DDOST	1650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20980769	20980769	+	Silent	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	DDOST	NM_005216	exon7	c.C792T	p.F264F	GTCGCTGAAGAAG	.	153	48	128	0	.	90	A	20980769	G	A	20980769	2	1	178	1	0	0	0	0	0	0	0	1	4335	1281	45	3		3	DDOST	1	20980769	Silent	SNP	G	TCGA-MR-A520-01A-11D-A25V-10	4992684	20980769	228269852	3	22553											
AHDC1	27245	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	27875598	27875598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	AHDC1	NM_001029882	exon6	c.C3029A	p.A1010D	GGTGAGGCAGGGA	.	37	4	27	0	.	90	T	27875598	G	T	27875598	3	4	178	1	0	0	0	0	1	0	0	0	412	1203	42	3	1786	3	AHDC1	1	27875598	Missense_Mutation	SNP	G	TCGA-MR-A520-01A-11D-A25V-10	6894829	27875598	221375023	4	22554											
TMEM61	199964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55452005	55452005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TMEM61	NM_182532	exon2	c.G251A	p.G84D	TCATTGGCCTGCT	.	125	36	72	0	.	68	A	55452005	G	A	55452005	3	1	178	1	0	0	0	0	1	0	0	0	16185	1203	42	3	257	3	TMEM61	1	55452005	Missense_Mutation	SNP	G	TCGA-MR-A520-01A-11D-A25V-10	27576407	55452005	193798616	5	22555											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	94654393	94654393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ARHGAP29	NM_004815	exon15	c.G1681A	p.G561R	ATGTACCTGGACT	.	215	9	234	0	.	296	T	94654393	C	T	94654393	3	4	178	1	0	0	0	0	1	0	0	0	878	695	24	3	2140	3	ARHGAP29	1	94654393	Missense_Mutation	SNP	C	TCGA-MR-A520-01A-11D-A25V-10	39202388	94654393	154596228	6	22556											
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380477	147380477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	GJA8	NM_005267	exon2	c.G395A	p.S132N	AGAAGAGCAGCGG	.	53	11	52	0	.	138	A	147380477	G	A	147380477	3	1	178	1	0	0	0	0	1	0	0	0	6405	971	34	3	397	3	GJA8	1	147380477	Missense_Mutation	SNP	G	TCGA-MR-A520-01A-11D-A25V-10	52726084	147380477	101870144	7	22557											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201196307	201196307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	IGFN1	NM_001164586	exon23	c.C11084A	p.A3695E	GCCAGGCAGTCAG	.	127	6	106	0	.	71	A	201196307	C	A	201196307	3	1	178	1	0	0	0	0	1	0	0	0	7590	710	25	3	11170	3	IGFN1	1	201196307	Missense_Mutation	SNP	C	TCGA-MR-A520-01A-11D-A25V-10	53815830	201196307	48054314	8	22558											
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164467790	164467790	+	Silent	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	FIGN	NM_018086	exon3	c.A552G	p.E184E	GGCATATTCCTGA	.	156	18	151	1	.	156	C	164467790	T	C	164467790	2	2	178	1	0	0	0	0	0	0	0	1	5891	1490	52	2		2	FIGN	2	164467790	Silent	SNP	T	TCGA-MR-A520-01A-11D-A25V-10		164467790	78731583	9	22559											
TRAM1L1	133022	broad.mit.edu;bcgsc.ca	37	4	118005752	118005752	+	Silent	SNP	A	A	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TRAM1L1	NM_152402	exon1	c.T798A	p.I266I	GGAAACAATTAAA	.	117	6	118	1	.	90	T	118005752	A	T	118005752	2	4	178	1	0	0	0	0	0	0	0	1	16449	126	5	4		4	TRAM1L1	4	118005752	Silent	SNP	A	TCGA-MR-A520-01A-11D-A25V-10		118005752	73148524	10	22560											
PRSS1	5644	broad.mit.edu;bcgsc.ca	37	7	142460286	142460286	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	PRSS1	NM_002769	exon4	c.C459T	p.D153D	AGCCGACTACCCA	.	722	72	586	1	.	577	T	142460286	C	T	142460286	2	4	178	1	0	0	0	0	0	0	0	1	12614	564	20	3		3	PRSS1	7	142460286	Silent	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		142460286	16678377	11	22561											
TOX	9760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	59852023	59852023	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TOX	NM_014729	exon3	c.G249A	p.L83L	GTGCACCAGCGAG	.	213	11	209	0	.	227	T	59852023	C	T	59852023	2	4	178	1	0	0	0	0	0	0	0	1	16374	581	21	3		3	TOX	8	59852023	Silent	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		59852023	86511999	12	22562											
KIAA1279	26128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70775430	70775430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	KIAA1279	NM_015634	exon7	c.C1124T	p.S375F	CCATCTCTGCAGT	.	95	37	94	0	.	91	T	70775430	C	T	70775430	3	4	178	1	0	0	0	0	1	0	0	0	8221	913	32	3	1150	3	KIAA1279	10	70775430	Missense_Mutation	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		70775430	64759317	13	22563											
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92616999	92616999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	HTR7	NM_019860	exon1	c.A430G	p.I144V	CCCCGATGAGGTC	.	306	79	223	0	.	91	C	92616999	T	C	92616999	3	2	178	1	0	0	0	0	1	0	0	0	7452	1464	51	2	1029	2	HTR7	10	92616999	Missense_Mutation	SNP	T	TCGA-MR-A520-01A-11D-A25V-10	21841569	92616999	42917748	14	22564											
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95109596	95109596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MYOF	NM_013451	exon36	c.A4052G	p.N1351S	GGAAAGTTGGGTG	.	209	59	177	0	.	93	C	95109596	T	C	95109596	3	2	178	1	0	0	0	0	1	0	0	0	10089	1725	60	2	2209	2	MYOF	10	95109596	Missense_Mutation	SNP	T	TCGA-MR-A520-01A-11D-A25V-10	2492597	95109596	40425151	15	22565											
OR5J2	282775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944717	55944717	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	OR5J2	NM_001005492	exon1	c.G624C	p.M208I	TGCCATGGCCACC	.	309	96	308	1	.	115	C	55944717	G	C	55944717	3	2	178	1	0	0	0	0	1	0	0	0	11165	1348	47	4	626	4	OR5J2	11	55944717	Missense_Mutation	SNP	G	TCGA-MR-A520-01A-11D-A25V-10		55944717	79061799	16	22566											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	92533065	92533065	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	FAT3	NM_001008781	exon9	c.C6886G	p.L2296V	ACAACACTATCAG	.	145	12	159	0	.	73	G	92533065	C	G	92533065	3	3	178	1	0	0	0	0	1	0	0	0	5691	564	20	4	6920	4	FAT3	11	92533065	Missense_Mutation	SNP	C	TCGA-MR-A520-01A-11D-A25V-10	36588348	92533065	42473451	17	22567											
SLC17A8	246213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	100774721	100774721	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SLC17A8	NM_001145288	exon2	c.C344G	p.P115R	GAAAACCGGAAAT	.	269	74	220	1	.	93	G	100774721	C	G	100774721	3	3	178	1	0	0	0	0	1	0	0	0	14423	652	23	4	350	4	SLC17A8	12	100774721	Missense_Mutation	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		100774721	33077174	18	22568											
SERPINA11	256394	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	94912673	94912673	+	Silent	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SERPINA11	NM_001080451	exon3	c.G912T	p.L304L	CCTGGGCAGGAGC	.	201	13	160	1	.	204	A	94912673	C	A	94912673	2	1	178	1	0	0	0	0	0	0	0	1	14088	697	25	3		3	SERPINA11	14	94912673	Silent	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		94912673	12436867	19	22569											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671020	49671020	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF423	NM_015069	exon4	c.G2043A	p.L681L	CACTGTCAGGTGC	.	249	77	182	0	.	228	T	49671020	C	T	49671020	2	4	178	1	0	0	0	0	0	0	0	1	17895	813	29	3		3	ZNF423	16	49671020	Silent	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		49671020	40683733	20	22570											
LRFN1	57622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39804840	39804840	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LRFN1	NM_020862	exon1	c.G1137A	p.A379A	CGCCGTCGCTTCC	.	50	20	29	0	.	70	T	39804840	C	T	39804840	2	4	178	1	0	0	0	0	0	0	0	1	8937	871	31	1		1	LRFN1	19	39804840	Silent	SNP	C	TCGA-MR-A520-01A-11D-A25V-10		39804840	19324143	21	22571											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51160334	51160334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SHANK3	NM_033517	exon21	c.A4031T	p.E1344V	GGGTGGAGGAGGC	.	68	11	46	0	.	69	T	51160334	A	T	51160334	3	4	178	1	0	0	0	0	1	0	0	0	14266	304	11	4	4207	4	SHANK3	22	51160334	Missense_Mutation	SNP	A	TCGA-MR-A520-01A-11D-A25V-10		51160334	144232	22	22572											
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135122263	135122263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SLC9A6	NM_001042537	exon15	c.G1756C	p.G586R	CACAGCGGGCCTC	.	151	96	118	0	.	131	C	135122263	G	C	135122263	3	2	178	1	0	0	0	0	1	0	0	0	14718	1116	39	4	1814	4	SLC9A6	23	135122263	Missense_Mutation	SNP	G	TCGA-MR-A520-01A-11D-A25V-10		135122263	20148297	23	22573											
TNFRSF8	943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12175637	12175637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TNFRSF8	NM_001243	exon8	c.A797C	p.D266A	TAGATGACCTTGT	.	103	34	100	0	.	654	C	12175637	A	C	12175637	3	2	179	1	0	0	0	0	1	0	0	0	16296	275	10	5	827	5	TNFRSF8	1	12175637	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10		12175637	237074984	1	22574											
LRP8	7804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53727742	53727742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP8	NM_004631	exon12	c.G1912C	p.E638Q	TCACCTCAAACAC	.	211	76	205	0	.	90	G	53727742	C	G	53727742	3	3	179	1	0	0	0	0	1	0	0	0	8963	835	29	4	1011	4	LRP8	1	53727742	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	41552105	53727742	195522879	2	22575											
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67833556	67833556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IL12RB2	NM_001559	exon10	c.A1307G	p.N436S	TGGACAACATTCT	.	159	39	140	0	.	92	G	67833556	A	G	67833556	3	3	179	1	0	0	0	0	1	0	0	0	7627	43	2	2	1341	2	IL12RB2	1	67833556	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	14105814	67833556	181417065	3	22576											
CTSK	1513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	150778408	150778408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CTSK	NM_000396	exon4	c.G328T	p.E110X	CCCATTCTGGGAT	.	134	59	204	0	.	91	A	150778408	C	A	150778408	4	1	179	1	0	0	0	0	0	1	0	0	4037	922	32	3	681	3	CTSK	1	150778408	Nonsense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	82944852	150778408	98472213	4	22577											
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	154543798	154543798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHRNB2	NM_000748	exon5	c.C499A	p.Q167K	GACCAGCAGAACT	.	278	16	274	0	.	90	A	154543798	C	A	154543798	3	1	179	1	0	0	0	0	1	0	0	0	3391	711	25	3	517	3	CHRNB2	1	154543798	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	3765390	154543798	94706823	5	22578											
RUSC1	23623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155295430	155295430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RUSC1	NM_001105203	exon6	c.G1781C	p.S594T	GCCGTAGCCGCTT	.	118	37	110	0	.	92	C	155295430	G	C	155295430	3	2	179	1	0	0	0	0	1	0	0	0	13750	971	34	4	1930	4	RUSC1	1	155295430	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	751632	155295430	93955191	6	22579											
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181452992	181452992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CACNA1E	NM_001205293	exon1	c.G112T	p.A38S	GCGGCCGCCTACA	.	198	79	202	1	.	95	T	181452992	G	T	181452992	3	4	179	1	0	0	0	0	1	0	0	0	2542	1087	38	1	114	1	CACNA1E	1	181452992	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	26157562	181452992	67797629	7	22580											
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211545809	211545809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRAF5	NM_004619	exon11	c.A1439G	p.Q480R	TCAGGCAGAGGGT	.	81	25	74	0	.	661	G	211545809	A	G	211545809	3	3	179	1	0	0	0	0	1	0	0	0	16441	188	7	2	1477	2	TRAF5	1	211545809	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	30092817	211545809	37704812	8	22581											
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220193425	220193425	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EPRS	NM_004446	exon10	c.A1254G	p.P418P	AATATATGGTTTT	.	102	23	140	0	.	92	C	220193425	T	C	220193425	2	2	179	1	0	0	0	0	0	0	0	1	5191	1451	51	2		2	EPRS	1	220193425	Silent	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	8647616	220193425	29057196	9	22582											
WDR43	23160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29129433	29129433	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	WDR43	NM_015131	exon3	c.A471G	p.T157T	ACAGACATGCAAA	.	85	24	98	0	.	69	G	29129433	A	G	29129433	2	3	179	1	0	0	0	0	0	0	0	1	17292	204	8	2		2	WDR43	2	29129433	Silent	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10		29129433	214069940	10	22583											
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61258823	61258823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PEX13	NM_002618	exon2	c.A362C	p.Q121P	TTCAGCAAGCTGA	.	138	36	94	0	.	91	C	61258823	A	C	61258823	3	2	179	1	0	0	0	0	1	0	0	0	11741	130	5	5	368	5	PEX13	2	61258823	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	32129390	61258823	181940550	11	22584											
USP34	9736	hgsc.bcm.edu;broad.mit.edu	37	2	61441759	61441760	+	In_Frame_Ins	INS	-	-	GACCTTGTT	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	USP34	NM_014709	exon68	c.8118_8119insAACAAGGTC	p.S2706delinsSTRS	GTGCAAAGACCTT	.	267	21	236	0	.	579	GACCTTGTT	61441760	-	GACCTTGTT	61441759	7	5	179	1	0	1	1	0	0	0	0	0	17062	59	3	0	2574	0	USP34	2	61441759	In_Frame_Ins	INS	-	TCGA-NI-A4U2-01A-11D-A28X-10	182936	61441759	181757614	12	22585											
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63283430	63283430	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OTX1	NM_014562	exon5	c.A1044T	p.S348S	AGCCTCATGGCGG	.	157	54	153	0	.	70	T	63283430	A	T	63283430	2	4	179	1	0	0	0	0	0	0	0	1	11320	204	8	4		4	OTX1	2	63283430	Silent	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	1841671	63283430	179915943	13	22586											
MRPL53	116540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74699251	74699251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MRPL53	NM_053050	exon3	c.C334T	p.R112C	GTCAGCGACCAGT	.	120	10	138	0	.	90	A	74699251	G	A	74699251	3	1	179	1	0	0	0	0	1	0	0	0	9817	1058	37	1	8	1	MRPL53	2	74699251	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	11415821	74699251	168500122	14	22587											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133489528	133489528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_207363	exon17	c.C5225A	p.P1742Q	GAGTCTGGCTGGC	.	220	72	236	0	.	.	T	133489528	G	T	133489528	3	4	179	1	0	0	0	0	1	0	0	0	10223	1348	47	3	520	3	NCKAP5	2	133489528	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	58790277	133489528	109709845	15	22588											
PRPF40A	55660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	153515808	153515808	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRPF40A	NM_017892	exon22	c.T2385G	p.H795Q	TTTCCTATGATGT	.	148	57	174	2	.	68	C	153515808	A	C	153515808	3	2	179	1	0	0	0	0	1	0	0	0	12571	446	16	5	427	5	PRPF40A	2	153515808	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	20026280	153515808	89683565	16	22589											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170055351	170055351	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP2	NM_004525	exon45	c.G8523A	p.L2841L	GTCACACAAATAA	.	94	27	89	0	.	175	T	170055351	C	T	170055351	2	4	179	1	0	0	0	0	0	0	0	1	8956	477	17	3		3	LRP2	2	170055351	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	16539543	170055351	73144022	17	22590											
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171260757	171260757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MYO3B	NM_001083615	exon20	c.A2278T	p.M760L	CTCCAGATGGAAT	.	88	28	94	0	.	530	T	171260757	A	T	171260757	3	4	179	1	0	0	0	0	1	0	0	0	10077	347	12	4	2356	4	MYO3B	2	171260757	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	1205406	171260757	71938616	18	22591											
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178081416	178081416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNRNPA3	NM_194247	exon6	c.G656T	p.G219V	GAGGTGGATCTGG	.	111	31	148	0	.	70	T	178081416	G	T	178081416	3	4	179	1	0	0	0	0	1	0	0	0	7260	1174	41	3	678	3	HNRNPA3	2	178081416	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	6820659	178081416	65117957	19	22592											
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179201097	179201097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OSBPL6	NM_001201482	exon9	c.A727G	p.T243A	TGCACAACTGGCC	.	112	39	136	0	.	69	G	179201097	A	G	179201097	3	3	179	1	0	0	0	0	1	0	0	0	11281	43	2	2	796	2	OSBPL6	2	179201097	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	1119681	179201097	63998276	20	22593											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	179579150	179579150	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TTN	NM_001267550	exon91	c.G26351A	p.W8784X	GAAATCCATATGT	.	70	11	61	0	.	636	T	179579150	C	T	179579150	4	4	179	1	0	0	0	0	0	1	0	0	16732	595	21	3	78266	3	TTN	2	179579150	Nonsense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	378053	179579150	63620223	21	22594											
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234894478	234894478	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRPM8	NM_024080	exon21	c.C2908T	p.L970L	AACATCCTGCTGG	.	208	84	251	0	.	94	T	234894478	C	T	234894478	2	4	179	1	0	0	0	0	0	0	0	1	16589	680	24	3		3	TRPM8	2	234894478	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	55315328	234894478	8304895	22	22595											
GRM7	2917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	7620716	7620716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GRM7	NM_000844	exon8	c.G2123T	p.S708I	CTTCCAGTTTAAT	.	321	93	360	2	.	526	T	7620716	G	T	7620716	3	4	179	1	0	0	0	0	1	0	0	0	6802	1029	36	3	2153	3	GRM7	3	7620716	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		7620716	190401714	23	22596											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	25668275	25668275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TOP2B	NM_001068	exon17	c.T2082A	p.H694Q	TAAGCCATGTAGC	.	74	4	66	0	.	273	T	25668275	A	T	25668275	3	4	179	1	0	0	0	0	1	0	0	0	16363	214	8	4	2863	4	TOP2B	3	25668275	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	18047559	25668275	172354155	24	22597											
SCN5A	6331	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38620987	38620987	+	Splice_Site	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SCN5A	NM_198056	exon19	c.3229-1G>A	.	TTCCTGCTGAAAA	.	127	41	124	1	.	98	T	38620987	C	T	38620987	5	4	179	1	0	0	0	0	0	0	1	0	13922	811	28	3	2866	3	SCN5A	3	38620987	Splice_Site	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	12952712	38620987	159401443	25	22598											
MST1	4485	hgsc.bcm.edu;bcgsc.ca	37	3	49724207	49724207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MST1	NM_020998	exon7	c.T757C	p.Y253H	GGCAATAGTTGTC	.	436	73	425	0	.	278	G	49724207	A	G	49724207	3	3	179	1	0	0	0	0	1	0	0	0	9890	420	15	2	1468	2	MST1	3	49724207	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	11103220	49724207	148298223	26	22599											
GNAI2	2771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	50273847	50273847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GNAI2	NM_002070	exon1	c.G80T	p.G27V	AGGACGGAGAGAA	.	118	41	99	0	.	417	T	50273847	G	T	50273847	3	4	179	1	0	0	0	0	1	0	0	0	6505	1174	41	3	82	3	GNAI2	3	50273847	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	549640	50273847	147748583	27	22600											
CACNA2D2	9254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50415488	50415488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CACNA2D2	NM_001174051	exon15	c.G1430A	p.G477D	TCCTTGCCTGCCA	.	134	32	113	0	.	278	T	50415488	C	T	50415488	3	4	179	1	0	0	0	0	1	0	0	0	2549	739	26	3	2128	3	CACNA2D2	3	50415488	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	141641	50415488	147606942	28	22601											
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73437175	73437175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PDZRN3	NM_015009	exon8	c.C1462A	p.L488I	TGGTTAGAAGAGC	.	11	4	17	0	.	232	T	73437175	G	T	73437175	3	4	179	1	0	0	0	0	1	0	0	0	11709	933	33	3	1750	3	PDZRN3	3	73437175	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	23021687	73437175	124585255	29	22602											
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111785275	111785275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMPRSS7	NM_001042575	exon11	c.G1214A	p.R405K	CCTTCAGGCAGCA	.	80	36	79	0	.	70	A	111785275	G	A	111785275	3	1	179	1	0	0	0	0	1	0	0	0	16249	1000	35	3	1252	3	TMPRSS7	3	111785275	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	38348100	111785275	86237155	30	22603											
NR1I2	8856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119526207	119526207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NR1I2	NM_022002	exon2	c.G227T	p.G76V	TCGGAGGTCCCCA	.	171	50	166	0	.	188	T	119526207	G	T	119526207	3	4	179	1	0	0	0	0	1	0	0	0	10620	1261	44	3	233	3	NR1I2	3	119526207	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	7740932	119526207	78496223	31	22604											
KCNMB3	27094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178968887	178968887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KCNMB3	NM_014407	exon1	c.A5G	p.D2G	GAAAAGTCCATCT	.	101	26	122	0	.	90	C	178968887	T	C	178968887	3	2	179	1	0	0	0	0	1	0	0	0	8076	1667	58	2	979	2	KCNMB3	3	178968887	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	59442680	178968887	19053543	32	22605											
PEX5L	51555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179537706	179537706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PEX5L	NM_016559	exon9	c.A881T	p.N294I	ATCCAGTTCCTCC	.	182	57	188	0	.	156	A	179537706	T	A	179537706	3	1	179	1	0	0	0	0	1	0	0	0	11749	1725	60	4	1027	4	PEX5L	3	179537706	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	568819	179537706	18484724	33	22606											
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799346	38799346	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TLR1	NM_003263	exon4	c.G1107A	p.G369G	AAGGTGCCCACAA	.	32	5	38	0	.	524	T	38799346	C	T	38799346	2	4	179	1	0	0	0	0	0	0	0	1	15946	726	26	3		3	TLR1	4	38799346	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		38799346	152354930	34	22607											
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88732684	88732684	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IBSP	NM_004967	exon7	c.C576T	p.S192S	CGGCAGCAGCGGA	.	238	79	240	0	.	90	T	88732684	C	T	88732684	2	4	179	1	0	0	0	0	0	0	0	1	7475	709	25	3		3	IBSP	4	88732684	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	49933338	88732684	102421592	35	22608											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141543975	141543975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TBC1D9	NM_015130	exon21	c.C3175T	p.L1059F	GCAGGAGGCTGGT	.	43	26	38	0	.	23	A	141543975	G	A	141543975	3	1	179	1	0	0	0	0	1	0	0	0	15624	1000	35	3	629	3	TBC1D9	4	141543975	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	52811291	141543975	49610301	36	22609											
ARFIP1	27236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153750843	153750843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ARFIP1	NM_001025593	exon2	c.G58A	p.E20K	AATGGAGAAGTTG	.	40	11	77	0	.	91	A	153750843	G	A	153750843	3	1	179	1	0	0	0	0	1	0	0	0	854	943	33	3	60	3	ARFIP1	4	153750843	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	12206868	153750843	37403433	37	22610											
KLHL2	11275	ucsc.edu;bcgsc.ca	37	4	166220662	166220662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KLHL2	NM_001161521	exon8	c.G787T	p.V263F	CAGAGGGTTGAAG	.	39	4	62	0	.	226	T	166220662	G	T	166220662	3	4	179	1	0	0	0	0	1	0	0	0	8374	1261	44	3	847	3	KLHL2	4	166220662	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	12469819	166220662	24933614	38	22611											
TTC33	23548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	40716358	40716358	+	Silent	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TTC33	NM_012382	exon5	c.A678T	p.S226S	ATTTGCTGAAACT	.	92	42	87	1	.	91	A	40716358	T	A	40716358	2	1	179	1	0	0	0	0	0	0	0	1	16699	1567	55	4		4	TTC33	5	40716358	Silent	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10		40716358	140198902	39	22612											
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu	37	5	74651016	74651017	+	In_Frame_Ins	INS	-	-	CAAGAC	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1699_1700insCAAGAC	p.N567delinsTRH	AGCACCAATAGAG	.	107	21	112	0	.	227	CAAGAC	74651017	-	CAAGAC	74651016	7	5	179	1	0	1	1	0	0	0	0	0	7231	130	5	0	1745	0	HMGCR	5	74651016	In_Frame_Ins	INS	-	TCGA-NI-A4U2-01A-11D-A28X-10	33934658	74651016	106264244	40	22613	144	2									
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	74651018	74651018	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1701delT	p.N567fs	CACCAATAGAGGC	.	107	21	111	0	.	227	-	74651018	T	-	74651018	7	5	179	1	0	1	0	1	0	0	0	0	7231	1403	49	0	1747	0	HMGCR	5	74651018	Frame_Shift_Del	DEL	T	TCGA-NI-A4U2-01A-11D-A28X-10	2	74651018	106264242	41	22614	144	2									
CHD1	1105	hgsc.bcm.edu;broad.mit.edu	37	5	98229286	98229286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHD1	NM_001270	exon13	c.G1825T	p.A609S	TAAATGCCCAATT	.	71	4	107	0	.	274	A	98229286	C	A	98229286	3	1	179	1	0	0	0	0	1	0	0	0	3323	739	26	3	3399	3	CHD1	5	98229286	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	23578268	98229286	82685974	42	22615											
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102469329	102469329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PPIP5K2	NM_015216	exon2	c.G287T	p.C96F	GTGATTGTCTTAT	.	40	14	61	0	.	92	T	102469329	G	T	102469329	3	4	179	1	0	0	0	0	1	0	0	0	12333	1377	48	3	293	3	PPIP5K2	5	102469329	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	4240043	102469329	78445931	43	22616											
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140579644	140579644	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PCDHB11	NM_018931	exon1	c.C297T	p.I99I	TTCCATCGAGCCT	.	96	5	109	0	.	96	T	140579644	C	T	140579644	2	4	179	1	0	0	0	0	0	0	0	1	11536	874	31	1		1	PCDHB11	5	140579644	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	38110315	140579644	40335616	44	22617											
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	159781851	159781851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	C1QTNF2	NM_031908	exon2	c.G303A	p.M101I	TCCCATCATTCCT	.	80	29	66	0	.	91	T	159781851	C	T	159781851	3	4	179	1	0	0	0	0	1	0	0	0	1963	826	29	3	697	3	C1QTNF2	5	159781851	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	19202207	159781851	21133409	45	22618											
TRIM41	90933	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180651721	180651721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRIM41	NM_201627	exon1	c.A722G	p.D241G	AGGTAGACGAAGA	.	224	15	234	1	.	226	G	180651721	A	G	180651721	3	3	179	1	0	0	0	0	1	0	0	0	16513	275	10	2	724	2	TRIM41	5	180651721	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	20869870	180651721	263539	46	22619											
AGPAT1	10554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32138303	32138303	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AGPAT1	NM_006411	exon4	c.C409T	p.L137L	AGGCCAGCCCGGC	.	124	36	114	0	.	90	A	32138303	G	A	32138303	2	1	179	1	0	0	0	0	0	0	0	1	386	962	34	3		3	AGPAT1	6	32138303	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		32138303	138976764	47	22620											
FGD2	221472	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36979514	36979514	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FGD2	NM_173558	exon4	c.C411T	p.R137R	AGCCCGCAGCAGC	.	147	40	145	1	.	229	T	36979514	C	T	36979514	2	4	179	1	0	0	0	0	0	0	0	1	5833	697	25	3		3	FGD2	6	36979514	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	4841211	36979514	134135553	48	22621											
FOXP4	116113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41566660	41566660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FOXP4	NM_001012426	exon17	c.G2029A	p.E677K	CCGGGAGAAGAAC	.	258	89	275	0	.	289	A	41566660	G	A	41566660	3	1	179	1	0	0	0	0	1	0	0	0	6029	943	33	3	2091	3	FOXP4	6	41566660	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	4587146	41566660	129548407	49	22622											
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63990465	63990465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LGSN	NM_016571	exon4	c.A991G	p.T331A	CAGAAGTGCTGCA	.	51	25	67	0	.	227	C	63990465	T	C	63990465	3	2	179	1	0	0	0	0	1	0	0	0	8759	1696	59	2	542	2	LGSN	6	63990465	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	22423805	63990465	107124602	50	22623											
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83888466	83888466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PGM3	NM_001199917	exon9	c.A1039C	p.S347R	TCAAACTTTCTCC	.	85	32	109	0	.	90	G	83888466	T	G	83888466	3	3	179	1	0	0	0	0	1	0	0	0	11800	1609	56	5	697	5	PGM3	6	83888466	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	19898001	83888466	87226601	51	22624											
KIAA0408	9729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127768213	127768213	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIAA0408	NM_014702	exon5	c.G1251A	p.E417E	ACTGCTCTCTGCT	.	36	5	66	0	.	90	T	127768213	C	T	127768213	2	4	179	1	0	0	0	0	0	0	0	1	8174	912	32	3		3	KIAA0408	6	127768213	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	43879747	127768213	43346854	52	22625											
KIF25	3834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168439388	168439388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIF25	NM_030615	exon5	c.A473G	p.E158G	GGACAGAGGTTGC	.	246	71	279	2	.	92	G	168439388	A	G	168439388	3	3	179	1	0	0	0	0	1	0	0	0	8293	304	11	2	487	2	KIF25	6	168439388	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	40671175	168439388	2675679	53	22626											
ZDHHC4	55146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6621814	6621814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZDHHC4	NM_018106	exon5	c.302delT	p.L101fs	ATTACCTTCTTCT	.	169	61	171	0	.	154	-	6621814	T	-	6621814	7	5	179	1	0	1	0	1	0	0	0	0	17614	1609	56	0	312	0	ZDHHC4	7	6621814	Frame_Shift_Del	DEL	T	TCGA-NI-A4U2-01A-11D-A28X-10		6621814	152516849	54	22627											
AOAH	313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36571897	36571897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AOAH	NM_001637	exon17	c.C1360A	p.L454I	CCTGGAGGCAGTT	.	166	53	222	1	.	91	T	36571897	G	T	36571897	3	4	179	1	0	0	0	0	1	0	0	0	726	1000	35	3	728	3	AOAH	7	36571897	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	29950083	36571897	122566766	55	22628											
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48619929	48619929	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ABCA13	NM_152701	exon56	c.T14464A	p.Y4822N	TATTATTACTGTA	.	63	25	77	1	.	521	A	48619929	T	A	48619929	3	1	179	1	0	0	0	0	1	0	0	0	31	1754	61	4	14515	4	ABCA13	7	48619929	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	12048032	48619929	110518734	56	22629											
SAMD9L	219285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92764969	92764969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SAMD9L	NM_152703	exon5	c.C316T	p.H106Y	TGGTGTGTTTTGG	.	86	23	117	1	.	94	A	92764969	G	A	92764969	3	1	179	1	0	0	0	0	1	0	0	0	13827	1377	48	3	4442	3	SAMD9L	7	92764969	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	44145040	92764969	66373694	57	22630											
SLC25A13	10165	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95838258	95838258	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC25A13	NM_001160210	exon5	c.A360G	p.T120T	ATGAATTGTGGTC	.	63	36	68	2	.	515	C	95838258	T	C	95838258	2	2	179	1	0	0	0	0	0	0	0	1	14475	1799	63	2		2	SLC25A13	7	95838258	Silent	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	3073289	95838258	63300405	58	22631											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131833385	131833385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLXNA4	NM_020911	exon26	c.G4681A	p.A1561T	TCCTTGCCCCACT	.	151	49	109	0	.	91	T	131833385	C	T	131833385	3	4	179	1	0	0	0	0	1	0	0	0	12122	739	26	3	1031	3	PLXNA4	7	131833385	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	35995127	131833385	27305278	59	22632											
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	32621590	32621590	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NRG1	NM_013956	exon13	c.C1608T	p.Y536Y	AGAGTACGAGCCA	.	106	29	114	0	.	525	T	32621590	C	T	32621590	2	4	179	1	0	0	0	0	0	0	0	1	10647	547	19	1		1	NRG1	8	32621590	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		32621590	113742432	60	22633											
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	70981670	70981670	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRDM14	NM_024504	exon2	c.G426A	p.P142P	ACAACACGGGCCA	.	147	12	150	0	.	93	T	70981670	C	T	70981670	2	4	179	1	0	0	0	0	0	0	0	1	12455	523	19	1		1	PRDM14	8	70981670	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	38360080	70981670	75382352	61	22634											
LRP12	29967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	105544164	105544164	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP12	NM_013437	exon2	c.A107T	p.E36V	ACATTTTCAGAAT	.	104	42	152	2	.	90	A	105544164	T	A	105544164	3	1	179	1	0	0	0	0	1	0	0	0	8954	1783	62	4	2496	4	LRP12	8	105544164	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	34562494	105544164	40819858	62	22635											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17394764	17394764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CNTLN	NM_017738	exon15	c.T2312C	p.V771A	CAGAAGTCACTTC	.	96	33	142	0	.	91	C	17394764	T	C	17394764	3	2	179	1	0	0	0	0	1	0	0	0	3639	1667	58	2	2400	2	CNTLN	9	17394764	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10		17394764	123818667	63	22636											
SMC5	23137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72874055	72874055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SMC5	NM_015110	exon1	c.C61G	p.P21A	GCTCTCCCGAGAG	.	127	44	149	1	.	229	G	72874055	C	G	72874055	3	3	179	1	0	0	0	0	1	0	0	0	14786	623	22	4	63	4	SMC5	9	72874055	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	55479291	72874055	68339376	64	22637											
FRMD3	257019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	85863364	85863364	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FRMD3	NM_174938	exon14	c.C1263T	p.A421A	CTCCCGGGCTGCC	.	40	14	36	0	.	91	A	85863364	G	A	85863364	2	1	179	1	0	0	0	0	0	0	0	1	6050	1219	43	3		3	FRMD3	9	85863364	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	12989309	85863364	55350067	65	22638											
TGFBR1	7046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101908774	101908774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TGFBR1	NM_004612	exon7	c.G1138A	p.A380T	TACATGGCCCCTG	.	45	9	77	0	.	954	A	101908774	G	A	101908774	3	1	179	1	0	0	0	0	1	0	0	0	15818	1203	42	3	1164	3	TGFBR1	9	101908774	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	16045410	101908774	39304657	66	22639											
EXD3	54932	hgsc.bcm.edu;bcgsc.ca	37	9	140247082	140247082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EXD3	NM_017820	exon11	c.C1027A	p.L343I	CCTGGAGCCTGAA	.	65	4	53	0	.	90	T	140247082	G	T	140247082	3	4	179	1	0	0	0	0	1	0	0	0	5299	971	34	3	1651	3	EXD3	9	140247082	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	38338308	140247082	966349	67	22640											
AKR1E2	83592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	4879675	4879675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AKR1E2	NM_001040177	exon5	c.G484A	p.G162R	ATCACCGGGCTGG	.	108	41	92	0	.	68	A	4879675	G	A	4879675	3	1	179	1	0	0	0	0	1	0	0	0	474	1116	39	1	502	1	AKR1E2	10	4879675	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		4879675	130655072	68	22641											
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127760045	127760046	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	TTCTTACCTCTGG	.	95	47	210	0	.	.	AA	127760046	CC	AA	127760045	3	1	179	1	0	0	0	0	1	0	0	0	236	521	18	3	1552	3	ADAM12	10	127760045	Missense_Mutation	DNP	CC	TCGA-NI-A4U2-01A-11D-A28X-10	122880370	127760045	7774702	69	22642											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1095258	1095258	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MUC2	NM_002457	exon33	c.G6066A	p.K2022K	CTCCAAGTCGACG	.	169	18	153	0	.	90	A	1095258	G	A	1095258	2	1	179	1	0	0	0	0	0	0	0	1	9975	1020	36	3		3	MUC2	11	1095258	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		1095258	133911258	70	22643											
LSP1	4046	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	1888129	1888129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LSP1	NM_001242932	exon2	c.A425G	p.N142S	GCACCAACTGCAG	.	12	6	14	0	.	90	G	1888129	A	G	1888129	3	3	179	1	0	0	0	0	1	0	0	0	9063	58	2	2		2	LSP1	11	1888129	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	792871	1888129	133118387	71	22644											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3707425	3707425	+	Splice_Site	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NUP98	NM_016320	exon30	c.4455-1G>C	.	TAATGTCTGCAAA	.	109	38	110	0	.	703	G	3707425	C	G	3707425	5	3	179	1	0	0	0	0	0	0	1	0	10773	927	32	4	968	4	NUP98	11	3707425	Splice_Site	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	1819296	3707425	131299091	72	22645											
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9450696	9450696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IPO7	NM_006391	exon14	c.T1544A	p.V515E	TGAAAGTGGAAGC	.	119	31	156	0	.	271	A	9450696	T	A	9450696	3	1	179	1	0	0	0	0	1	0	0	0	7797	1696	59	4	1598	4	IPO7	11	9450696	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	5743271	9450696	125555820	73	22646											
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10796824	10796824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CTR9	NM_014633	exon23	c.C2956A	p.P986T	CGACGTCCACCAA	.	46	20	66	0	.	92	A	10796824	C	A	10796824	3	1	179	1	0	0	0	0	1	0	0	0	4024	855	30	3	3046	3	CTR9	11	10796824	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	1346128	10796824	124209692	74	22647											
SLC3A2	6520	broad.mit.edu;bcgsc.ca	37	11	62648802	62648802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC3A2	NM_001012662	exon4	c.A613G	p.I205V	GTCATAATCGTGC	.	59	21	53	2	.	90	G	62648802	A	G	62648802	3	3	179	1	0	0	0	0	1	0	0	0	14627	101	4	2	724	2	SLC3A2	11	62648802	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	51851978	62648802	72357714	75	22648											
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	110477435	110477435	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ARHGAP20	NM_020809	exon10	c.C814T	p.R272X	AGTCTCGAAGATG	.	55	12	72	0	.	230	A	110477435	G	A	110477435	4	1	179	1	0	0	0	0	0	1	0	0	870	1066	37	1	2789	1	ARHGAP20	11	110477435	Nonsense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	47828633	110477435	24529081	76	22649											
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	112064703	112064703	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	BCO2	NM_031938	exon4	c.G619T	p.E207X	ACTCTGGAAAAAA	.	68	16	71	0	.	68	T	112064703	G	T	112064703	4	4	179	1	0	0	0	0	0	1	0	0	1385	1175	41	3	633	3	BCO2	11	112064703	Nonsense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	1587268	112064703	22941813	77	22650											
USP2	9099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119228275	119228275	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	USP2	NM_004205	exon11	c.G1527A	p.R509R	TCGGATCCTGGAT	.	132	50	115	0	.	661	T	119228275	C	T	119228275	2	4	179	1	0	0	0	0	0	0	0	1	17048	854	30	3		3	USP2	11	119228275	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	7163572	119228275	15778241	78	22651											
NANOG	79923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7945627	7945627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NANOG	NM_024865	exon2	c.C233T	p.T78I	AACCCACTTCTGC	.	134	62	194	0	.	90	T	7945627	C	T	7945627	3	4	179	1	0	0	0	0	1	0	0	0	10150	565	20	3	239	3	NANOG	12	7945627	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		7945627	125906268	79	22652											
OR9K2	441639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55524128	55524128	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OR9K2	NM_001005243	exon1	c.T576C	p.S192S	TTTATCTTTTTGC	.	96	33	107	1	.	69	C	55524128	T	C	55524128	2	2	179	1	0	0	0	0	0	0	0	1	11254	1596	56	2		2	OR9K2	12	55524128	Silent	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	47578501	55524128	78327767	80	22653											
ESYT1	23344	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56526103	56526103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ESYT1	NM_015292	exon8	c.C971T	p.S324F	TGCGTTCCCCTCT	.	158	48	186	1	.	95	T	56526103	C	T	56526103	3	4	179	1	0	0	0	0	1	0	0	0	5264	855	30	3	1001	3	ESYT1	12	56526103	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	1001975	56526103	77325792	81	22654											
TMBIM4	51643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	66531753	66531753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	TMBIM4,brain,glioma,-1	TMBIM4	NM_016056	exon7	c.T704G	p.V235G	TTATTAACTGCTT	.	51	16	55	0	.	515	C	66531753	A	C	66531753	3	2	179	1	0	0	0	0	1	0	0	0	15979	43	2	5	16	5	TMBIM4	12	66531753	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	10005650	66531753	67320142	82	22655											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	85518185	85518185	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon17	c.A3895T	p.R1299X	CAGAAGAGAGAAG	.	78	27	76	0	.	95	T	85518185	A	T	85518185	4	4	179	1	0	0	0	0	0	1	0	0	9029	296	11	4	3957	4	LRRIQ1	12	85518185	Nonsense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	18986432	85518185	48333710	83	22656											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85554390	85554390	+	Splice_Site	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon24	c.4721-1G>C	.	TGTTTAGATTCCA	.	52	23	50	0	.	95	C	85554390	G	C	85554390	5	2	179	1	0	0	0	0	0	0	1	0	9029	956	33	4	4814	4	LRRIQ1	12	85554390	Splice_Site	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	36205	85554390	48297505	84	22657											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431983	121431983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	HNF1A,NS,other,0	HNF1A	NM_000545	exon4	c.A730G	p.R244G	ATCCAGAGAGGGG	.	163	46	150	1	.	1745	G	121431983	A	G	121431983	3	3	179	1	0	0	0	0	1	0	0	0	7251	296	11	2	744	2	HNF1A	12	121431983	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	35877593	121431983	12419912	85	22658											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121434162	121434162	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.1053delG	p.V351fs	CCAAGTGTCCCCC	.	142	29	168	0	.	1745	-	121434162	G	-	121434162	7	5	179	1	0	1	0	1	0	0	0	0	7251	1364	48	0	1071	0	HNF1A	12	121434162	Frame_Shift_Del	DEL	G	TCGA-NI-A4U2-01A-11D-A28X-10	2179	121434162	12417733	86	22659	145	2									
HNF1A	6927	hgsc.bcm.edu;bcgsc.ca	37	12	121434164	121434164	+	Missense_Mutation	SNP	C	C	T	rs151344538	alternate_allele	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.C1055T	p.S352F	AAGTGTCCCCCAC	.	141	29	167	0	.	1745	T	121434164	C	T	121434164	3	4	179	1	0	0	0	0	1	0	0	0	7251	855	30	3	1073	3	HNF1A	12	121434164	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	2	121434164	12417731	87	22660	145	2									
CPB2	1361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46638821	46638821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CPB2	NM_001872	exon8	c.C758T	p.T253I	AGGTCTGTTCCGA	.	145	50	160	0	.	92	A	46638821	G	A	46638821	3	1	179	1	0	0	0	0	1	0	0	0	3797	1377	48	3	529	3	CPB2	13	46638821	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		46638821	68531057	88	22661											
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	70293586	70293586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KLHL1	NM_020866	exon9	c.A1930G	p.T644A	CACATGTGGCCAC	.	130	32	146	0	.	90	C	70293586	T	C	70293586	3	2	179	1	0	0	0	0	1	0	0	0	8365	1696	59	2	328	2	KLHL1	13	70293586	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	23654765	70293586	44876292	89	22662											
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76429476	76429476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LMO7	NM_005358	exon28	c.G3896A	p.G1299D	CCCTGGGTCTTTG	.	166	49	176	0	.	586	A	76429476	G	A	76429476	3	1	179	1	0	0	0	0	1	0	0	0	8855	1261	44	3	5016	3	LMO7	13	76429476	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	6135890	76429476	38740402	90	22663											
FBXL3	26224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77589641	77589641	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FBXL3	NM_012158	exon4	c.T546A	p.T182T	TACTGGAGTATCA	.	109	38	147	0	.	226	T	77589641	A	T	77589641	2	4	179	1	0	0	0	0	0	0	0	1	5720	291	11	4		4	FBXL3	13	77589641	Silent	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	1160165	77589641	37580237	91	22664											
IRS2	8660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	110437992	110437992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IRS2	NM_003749	exon1	c.C409T	p.R137C	GCGCGCGGTACCA	.	39	12	30	0	.	1334	A	110437992	G	A	110437992	3	1	179	1	0	0	0	0	1	0	0	0	7841	1116	39	1	3615	1	IRS2	13	110437992	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	32848351	110437992	4731886	92	22665											
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931535	23931535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NDN	NM_002487	exon1	c.A830G	p.E277G	AGGAACTCCATGA	.	52	12	69	0	.	90	C	23931535	T	C	23931535	3	2	179	1	0	0	0	0	1	0	0	0	10247	1551	54	2	139	2	NDN	15	23931535	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10		23931535	78599857	93	22666											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54590037	54590037	+	Silent	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UNC13C	NM_001080534	exon10	c.T4017A	p.S1339S	TGTATCTGGGGCC	.	276	81	291	0	.	51	A	54590037	T	A	54590037	2	1	179	1	0	0	0	0	0	0	0	1	16983	1567	55	4		4	UNC13C	15	54590037	Silent	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	30658502	54590037	47941355	94	22667											
UNKL	64718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1417163	1417179	+	Frame_Shift_Del	DEL	CCGATGTCCCCACAGCC	CCGATGTCCCCACAGCC	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	CCGATGTCCCCACAGCC	CCGATGTCCCCACAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UNKL	NM_023076	exon5	c.457_473del	p.153_158del	ATGGTGCCGATGT	.	146	10	128	0	.	90	-	1417179	CCGATGTCCCCACAGCC	-	1417163	7	5	179	1	0	1	0	1	0	0	0	0	16998	739	26	0	233	0	UNKL	16	1417163	Frame_Shift_Del	DEL	CCGATGTCCCCACAGCC	TCGA-NI-A4U2-01A-11D-A28X-10		1417163	88937590	95	22668											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27549250	27549250	+	Splice_Site	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GTF3C1	NM_001520	exon5	c.609-2A>T	.	CAACCCTGGAGGA	.	79	26	71	0	.	94	A	27549250	T	A	27549250	5	1	179	1	0	0	0	0	0	0	1	0	6872	1594	55	4	5858	4	GTF3C1	16	27549250	Splice_Site	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	26132087	27549250	62805503	96	22669											
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	46716005	46716005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	VPS35	NM_018206	exon3	c.G185C	p.S62T	TAGTAACTCTTTG	.	156	10	214	0	.	90	G	46716005	C	G	46716005	3	3	179	1	0	0	0	0	1	0	0	0	17200	565	20	4	2265	4	VPS35	16	46716005	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	19166755	46716005	43638748	97	22670											
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71019100	71019100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HYDIN	NM_001270974	exon28	c.C4320G	p.I1440M	AGGCAGGATTAGT	.	93	26	97	0	.	92	C	71019100	G	C	71019100	3	2	179	1	0	0	0	0	1	0	0	0	7467	1164	41	4	11281	4	HYDIN	16	71019100	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	24303095	71019100	19335653	98	22671											
ZFHX3	463	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72829983	72829983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZFHX3	NM_006885	exon9	c.G6598A	p.E2200K	GCCTCTCTTTGAA	.	119	46	131	1	.	72	T	72829983	C	T	72829983	3	4	179	1	0	0	0	0	1	0	0	0	17631	922	32	3	4521	3	ZFHX3	16	72829983	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	1810883	72829983	17524770	99	22672											
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7131298	7131298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DVL2	NM_004422	exon10	c.G1100T	p.R367L	TCACTTCGGGGGA	.	97	51	187	0	.	659	A	7131298	C	A	7131298	3	1	179	1	0	0	0	0	1	0	0	0	4836	884	31	1	1134	1	DVL2	17	7131298	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		7131298	74063912	100	22673											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26948494	26948494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIAA0100	NM_014680	exon27	c.G4982T	p.R1661L	CGCTGCCGGTGCT	.	69	21	83	0	.	93	A	26948494	C	A	26948494	3	1	179	1	0	0	0	0	1	0	0	0	8154	652	23	1	1777	1	KIAA0100	17	26948494	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	19817196	26948494	54246716	101	22674											
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67080447	67080447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ABCA6	NM_080284	exon34	c.A4310G	p.D1437G	GGTTCATCCAGGA	.	114	29	109	0	.	159	C	67080447	T	C	67080447	3	2	179	1	0	0	0	0	1	0	0	0	36	1435	50	2	567	2	ABCA6	17	67080447	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	40131953	67080447	14114763	102	22675											
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78220002	78220002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC26A11	NM_173626	exon12	c.G1147A	p.V383M	GGCCTGGTGACGG	.	69	20	53	0	.	90	A	78220002	G	A	78220002	3	1	179	1	0	0	0	0	1	0	0	0	14516	1261	44	3	1185	3	SLC26A11	17	78220002	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	11139555	78220002	2975208	103	22676											
NDUFV2	4729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9102767	9102767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NDUFV2	NM_021074	exon1	c.C26T	p.A9V	TCCGGGCCCGGGC	.	33	16	20	0	.	91	T	9102767	C	T	9102767	3	4	179	1	0	0	0	0	1	0	0	0	10300	739	26	3	28	3	NDUFV2	18	9102767	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		9102767	68974481	104	22677											
ST8SIA3	51046	broad.mit.edu;bcgsc.ca	37	18	55024675	55024675	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ST8SIA3	NM_015879	exon3	c.G834A	p.P278P	TTGGCCGGGAAAT	.	14	4	19	0	.	136	A	55024675	G	A	55024675	2	1	179	1	0	0	0	0	0	0	0	1	15232	1103	39	1		1	ST8SIA3	18	55024675	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	45921908	55024675	23052573	105	22678											
CCBE1	147372	broad.mit.edu;bcgsc.ca	37	18	57136703	57136703	+	Splice_Site	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CCBE1	NM_133459	exon5	c.400+2T>A	.	CAACACACCCAGA	.	182	8	180	1	.	93	T	57136703	A	T	57136703	5	4	179	1	0	0	0	0	0	0	1	0	2731	173	6	4	850	4	CCBE1	18	57136703	Splice_Site	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	2112028	57136703	20940545	106	22679											
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3522996	3522996	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FZR1	NM_001136197	exon1	c.G9A	p.Q3Q	GGACCAGGACTAT	.	202	66	164	0	.	227	A	3522996	G	A	3522996	2	1	179	1	0	0	0	0	0	0	0	1	6138	991	35	3		3	FZR1	19	3522996	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		3522996	55605987	107	22680											
ZNF558	148156	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8932718	8932718	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZNF558	NM_144693	exon2	c.C81T	p.G27G	CTCTCCGCCCTGT	.	191	77	217	1	.	90	A	8932718	G	A	8932718	2	1	179	1	0	0	0	0	0	0	0	1	17986	1074	38	1		1	ZNF558	19	8932718	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	5409722	8932718	50196265	108	22681											
DNMT1	1786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10248624	10248624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DNMT1	NM_001130823	exon36	c.G4177A	p.V1393M	TCCGCACCTCCGG	.	157	56	138	1	.	660	T	10248624	C	T	10248624	3	4	179	1	0	0	0	0	1	0	0	0	4675	507	18	3	745	3	DNMT1	19	10248624	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	1315906	10248624	48880359	109	22682											
CILP2	148113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19654087	19654087	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CILP2	NM_153221	exon7	c.A1008G	p.R336R	CAGGCGAGCTCAT	.	237	63	229	1	.	91	G	19654087	A	G	19654087	2	3	179	1	0	0	0	0	0	0	0	1	3430	291	11	2		2	CILP2	19	19654087	Silent	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	9405463	19654087	39474896	110	22683											
SCN1B	6324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35523452	35523452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SCN1B	NM_001037	exon2	c.T61A	p.C21S	GGGGGCTGCGTGG	.	80	19	87	0	.	91	A	35523452	T	A	35523452	3	1	179	1	0	0	0	0	1	0	0	0	13915	1580	55	4	67	4	SCN1B	19	35523452	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	15869365	35523452	23605531	111	22684											
YIF1B	90522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38796134	38796134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	YIF1B	NM_001145463	exon9	c.G871A	p.G291S	TTCAGCCGCAGCG	.	254	92	284	2	.	68	T	38796134	C	T	38796134	3	4	179	1	0	0	0	0	1	0	0	0	17473	652	23	1	145	1	YIF1B	19	38796134	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	3272682	38796134	20332849	112	22685											
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	38964295	38964295	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RYR1	NM_001042723	exon28	c.A4044G	p.K1348K	CGGCAAAGAAGGG	.	93	36	78	2	.	100	G	38964295	A	G	38964295	2	3	179	1	0	0	0	0	0	0	0	1	13768	69	3	2		2	RYR1	19	38964295	Silent	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	168161	38964295	20164688	113	22686											
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48565344	48565344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLA2G4C	NM_001159322	exon14	c.A1198G	p.I400V	TGTTGATGGCTAA	.	147	43	162	0	.	92	C	48565344	T	C	48565344	3	2	179	1	0	0	0	0	1	0	0	0	12003	1464	51	2	477	2	PLA2G4C	19	48565344	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	9601049	48565344	10563639	114	22687											
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	51171701	51171701	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SHANK1	NM_016148	exon22	c.C3516T	p.S1172S	GCCCTGGCTGCTG	.	15	6	18	0	.	153	A	51171701	G	A	51171701	2	1	179	1	0	0	0	0	0	0	0	1	14264	1194	42	3		3	SHANK1	19	51171701	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	2606357	51171701	7957282	115	22688											
SIGLEC10	89790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51920190	51920190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SIGLEC10	NM_001171157	exon3	c.C436T	p.P146S	CATCAGGCTTCTG	.	179	43	223	1	.	91	A	51920190	G	A	51920190	3	1	179	1	0	0	0	0	1	0	0	0	14306	1217	42	3	1693	3	SIGLEC10	19	51920190	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	748489	51920190	7208793	116	22689											
ZNF480	147657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52817496	52817496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZNF480	NM_144684	exon3	c.G163T	p.V55L	AAGGATGTGATGT	.	67	18	63	0	.	153	T	52817496	G	T	52817496	3	4	179	1	0	0	0	0	1	0	0	0	17932	1377	48	3	169	3	ZNF480	19	52817496	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	897306	52817496	6311487	117	22690											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34773213	34773213	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EPB41L1	NM_001258329	exon8	c.C741T	p.T247T	CCAGACCCGGGAG	.	86	13	93	0	.	93	T	34773213	C	T	34773213	2	4	179	1	0	0	0	0	0	0	0	1	5152	610	22	3		3	EPB41L1	20	34773213	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		34773213	28252307	118	22691											
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44511883	44511883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZSWIM1	NM_080603	exon2	c.A652C	p.S218R	CTCCTGAGCAACT	.	74	20	80	0	.	91	C	44511883	A	C	44511883	3	2	179	1	0	0	0	0	1	0	0	0	18237	304	11	5	654	5	ZSWIM1	20	44511883	Missense_Mutation	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	9738670	44511883	18513637	119	22692											
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32589248	32589248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RFPL2	NM_006605	exon1	c.C14T	p.S5L	ACAAGTGACAACC	.	211	106	217	0	.	91	A	32589248	G	A	32589248	3	1	179	1	0	0	0	0	1	0	0	0	13254	1294	45	3	947	3	RFPL2	22	32589248	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10		32589248	18715318	120	22693											
MGAT3	4248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39884425	39884425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MGAT3	NM_002409	exon2	c.C1073T	p.T358I	CGGGCACCCTGGA	.	108	30	85	1	.	90	T	39884425	C	T	39884425	3	4	179	1	0	0	0	0	1	0	0	0	9544	507	18	3	1075	3	MGAT3	22	39884425	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	7295177	39884425	11420141	121	22694											
P2RY8	286530	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1585347	1585347	+	Silent	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	P2RY8	NM_178129	exon2	c.G105T	p.A35A	GCTGACCGCCGCC	.	129	41	132	1	.	522	A	1585347	C	A	1585347	2	1	179	1	0	0	0	0	0	0	0	1	11355	639	23	1		1	P2RY8	23	1585347	Silent	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10		1585347	153685213	122	22695											
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49854827	49854827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CLCN5	NM_001127898	exon13	c.G1799T	p.G600V	TGACTGGTGGCTT	.	49	29	66	0	.	132	T	49854827	G	T	49854827	3	4	179	1	0	0	0	0	1	0	0	0	3466	1261	44	3	1841	3	CLCN5	23	49854827	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	48269480	49854827	105415733	123	22696											
FAM46D	169966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79698451	79698451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FAM46D	NM_001170574	exon5	c.G413A	p.C138Y	AGGTTTGCAATGG	.	49	7	80	0	.	130	A	79698451	G	A	79698451	3	1	179	1	0	0	0	0	1	0	0	0	5568	1319	46	3	415	3	FAM46D	23	79698451	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	29843624	79698451	75572109	124	22697											
PLP1	5354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103042816	103042816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLP1	NM_001128834	exon5	c.G543T	p.W181C	CACCTGGACCACC	.	115	77	102	1	.	555	T	103042816	G	T	103042816	3	4	179	1	0	0	0	0	1	0	0	0	12104	1183	41	3	557	3	PLP1	23	103042816	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	23344365	103042816	52227744	125	22698											
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	118603838	118603838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC25A5	NM_001152	exon2	c.T326G	p.F109C	CCCAGTTTTGGCT	.	104	11	80	0	.	131	G	118603838	T	G	118603838	3	3	179	1	0	0	0	0	1	0	0	0	14512	1841	64	5	332	5	SLC25A5	23	118603838	Missense_Mutation	SNP	T	TCGA-NI-A4U2-01A-11D-A28X-10	15561022	118603838	36666722	126	22699											
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129149866	129149866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	BCORL1	NM_021946	exon3	c.C3118G	p.L1040V	CCACAGCTTGGAA	.	129	81	101	0	.	294	G	129149866	C	G	129149866	3	3	179	1	0	0	0	0	1	0	0	0	1387	797	28	4	3128	4	BCORL1	23	129149866	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	10546028	129149866	26120694	127	22700											
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130408573	130408573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IGSF1	NM_001170961	exon18	c.G3766A	p.G1256R	TCTTACCTGCTGC	.	29	5	60	0	.	133	T	130408573	C	T	130408573	3	4	179	1	0	0	0	0	1	0	0	0	7596	695	24	3	271	3	IGSF1	23	130408573	Missense_Mutation	SNP	C	TCGA-NI-A4U2-01A-11D-A28X-10	1258707	130408573	24861987	128	22701											
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135106598	135106598	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC9A6	NM_001042537	exon12	c.A1572G	p.V524V	GTGGGTATTTGGT	.	93	54	106	0	.	131	G	135106598	A	G	135106598	2	3	179	1	0	0	0	0	0	0	0	1	14718	436	16	2		2	SLC9A6	23	135106598	Silent	SNP	A	TCGA-NI-A4U2-01A-11D-A28X-10	4698025	135106598	20163962	129	22702											
MTMR1	8776	ucsc.edu;bcgsc.ca	37	X	149895739	149895739	+	Silent	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MTMR1	NM_003828	exon4	c.G381T	p.L127L	AACCCTGACAGTG	.	43	4	39	0	.	131	T	149895739	G	T	149895739	2	4	179	1	0	0	0	0	0	0	0	1	9938	1277	45	3		3	MTMR1	23	149895739	Silent	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	14789141	149895739	5374821	130	22703											
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153940659	153940659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GAB3	NM_001081573	exon4	c.C914T	p.S305F	GTGTTGGACATAA	.	130	95	95	0	.	227	A	153940659	G	A	153940659	3	1	179	1	0	0	0	0	1	0	0	0	6150	1174	41	3	877	3	GAB3	23	153940659	Missense_Mutation	SNP	G	TCGA-NI-A4U2-01A-11D-A28X-10	4044920	153940659	1329901	131	22704											
TMEM51	55092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15541674	15541674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TMEM51	NM_018022	exon2	c.T91A	p.W31R	GCCATGTGGAACC	.	36	16	39	0	.	90	A	15541674	T	A	15541674	3	1	180	1	0	0	0	0	1	0	0	0	16174	1696	59	4	93	4	TMEM51	1	15541674	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10		15541674	233708947	1	22705											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152277443	152277443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FLG	NM_002016	exon3	c.C9919A	p.Q3307K	ACTGCTGGTGGCG	.	166	101	130	0	.	106	T	152277443	G	T	152277443	3	4	180	1	0	0	0	0	1	0	0	0	5922	1357	47	3	2270	3	FLG	1	152277443	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	136735769	152277443	96973178	2	22706											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152287879	152287879	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FLG	NM_002016	exon2	c.T54A	p.Y18X	TTTTGAATATTGC	.	437	87	327	0	.	106	T	152287879	A	T	152287879	4	4	180	1	0	0	0	0	0	1	0	0	5922	108	4	4	12139	4	FLG	1	152287879	Nonsense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	10436	152287879	96962742	3	22707											
PYGO2	90780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154931467	154931467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PYGO2	NM_138300	exon3	c.G1009T	p.V337L	CGTTCACCTCACT	.	100	24	59	0	.	227	A	154931467	C	A	154931467	3	1	180	1	0	0	0	0	1	0	0	0	12864	507	18	3	215	3	PYGO2	1	154931467	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	2643588	154931467	94319154	4	22708											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156815580	156815580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	INSRR	NM_014215	exon10	c.G2005A	p.D669N	GCGGATCGTTGTT	.	180	70	108	0	.	1403	T	156815580	C	T	156815580	3	4	180	1	0	0	0	0	1	0	0	0	7774	884	31	1	1939	1	INSRR	1	156815580	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	1884113	156815580	92435041	5	22709											
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209953855	209953855	+	Missense_Mutation	SNP	C	C	G	rs147808288		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRAF3IP3	NM_025228	exon15	c.C1353G	p.N451K	CCCTAACGAAGTG	.	121	26	98	0	C|1.000;G|0.000	291	G	209953855	C	G	209953855	3	3	180	1	0	0	0	0	1	0	0	0	16439	535	19	4	1403	4	TRAF3IP3	1	209953855	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	53138275	209953855	39296766	6	22710											
TTC13	79573	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231059660	231059660	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TTC13	NM_024525	exon15	c.C1741G	p.P581A	GCACGGGCTGGTC	.	120	22	77	1	.	92	C	231059660	G	C	231059660	3	2	180	1	0	0	0	0	1	0	0	0	16677	1203	42	4	877	4	TTC13	1	231059660	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	21105805	231059660	18190961	7	22711											
TRIM58	25893	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248020828	248020828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRIM58	NM_015431	exon1	c.C280T	p.R94W	GGGGCGCGGCGAT	.	25	4	30	0	.	96	T	248020828	C	T	248020828	3	4	180	1	0	0	0	0	1	0	0	0	16528	759	27	1	282	1	TRIM58	1	248020828	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	16961168	248020828	1229793	8	22712											
TPO	7173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1488563	1488563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TPO	NM_175719	exon9	c.C1534T	p.P512S	GAGCACCCCGACC	.	79	18	131	1	.	332	T	1488563	C	T	1488563	3	4	180	1	0	0	0	0	1	0	0	0	16407	623	22	3	1564	3	TPO	2	1488563	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10		1488563	241710810	9	22713											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	29294547	29294547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	C2orf71	NM_001029883	exon1	c.G2581T	p.E861X	GGGTTTCCTTGGG	.	109	35	119	0	.	91	A	29294547	C	A	29294547	4	1	180	1	0	0	0	0	0	1	0	0	2191	864	30	3	1293	3	C2orf71	2	29294547	Nonsense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	27805984	29294547	213904826	10	22714											
DNAH6	1768	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84784866	84784866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DNAH6	NM_001370	exon11	c.T1610G	p.I537S	ATGGTATTTTGGG	.	166	35	159	0	.	69	G	84784866	T	G	84784866	3	3	180	1	0	0	0	0	1	0	0	0	4605	1493	52	5	1648	5	DNAH6	2	84784866	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	55490319	84784866	158414507	11	22715											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179593438	179593438	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TTN	NM_001267550	exon66	c.A19215G	p.E6405E	AACACATTCCAAG	.	181	54	197	0	.	636	C	179593438	T	C	179593438	2	2	180	1	0	0	0	0	0	0	0	1	16732	1490	52	2		2	TTN	2	179593438	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	94808572	179593438	63605935	12	22716											
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202250957	202250957	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRAK2	NM_015049	exon14	c.A1947G	p.A649A	TCCACCTGCTGAA	.	122	36	152	0	.	90	C	202250957	T	C	202250957	2	2	180	1	0	0	0	0	0	0	0	1	16447	1567	55	2		2	TRAK2	2	202250957	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	22657519	202250957	40948416	13	22717											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	230661327	230661327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRIP12	NM_004238	exon24	c.3571delC	p.H1191fs	ATACATGAAGAAA	.	184	46	143	0	.	572	-	230661327	G	-	230661327	7	5	180	1	0	1	0	1	0	0	0	0	16553	1290	45	0	2479	0	TRIP12	2	230661327	Frame_Shift_Del	DEL	G	TCGA-O8-A75V-01A-11D-A32G-10	28410370	230661327	12538046	14	22718											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238253847	238253847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	COL6A3	NM_004369	exon33	c.G7102T	p.G2368C	TGTTGCCCTTGGG	.	86	13	113	0	.	526	A	238253847	C	A	238253847	3	1	180	1	0	0	0	0	1	0	0	0	3701	623	22	3	2479	3	COL6A3	2	238253847	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	7592520	238253847	4945526	15	22719											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10076196	10076196	+	Silent	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FANCD2	NM_001018115	exon4	c.G249C	p.L83L	GACCCTGAGGAGA	.	133	27	163	0	.	229	C	10076196	G	C	10076196	2	2	180	1	0	0	0	0	0	0	0	1	5665	1277	45	4		4	FANCD2	3	10076196	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		10076196	187946234	16	22720											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	157	48	169	0	.	24361	C	41266136	T	C	41266136	3	2	180	1	0	0	0	0	1	0	0	0	4016	1783	62	2	139	2	CTNNB1	3	41266136	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	31189940	41266136	156756294	17	22721											
ALS2CL	259173	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46727834	46727834	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ALS2CL	NM_001190707	exon6	c.A630G	p.T210T	AGCCTGTGTGGCC	.	115	29	131	1	.	155	C	46727834	T	C	46727834	2	2	180	1	0	0	0	0	0	0	0	1	551	1683	59	2		2	ALS2CL	3	46727834	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	5461698	46727834	151294596	18	22722											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51690041	51690041	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	RAD54L2	NM_015106	exon19	c.G3081A	p.Q1027Q	TGTGCAGTCCACC	.	72	20	109	0	.	93	A	51690041	G	A	51690041	2	1	180	1	0	0	0	0	0	0	0	1	12994	1020	36	3		3	RAD54L2	3	51690041	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	4962207	51690041	146332389	19	22723											
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126071030	126071030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KLF15	NM_014079	exon2	c.G736T	p.V246F	CCTTGACATTCTC	.	141	38	137	0	.	91	A	126071030	C	A	126071030	3	1	180	1	0	0	0	0	1	0	0	0	8343	478	17	3	522	3	KLF15	3	126071030	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	74380989	126071030	71951400	20	22724											
CCDC96	257236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7043534	7043534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CCDC96	NM_153376	exon1	c.G1132A	p.E378K	TGTTCTCCAGCCG	.	81	18	93	0	.	90	T	7043534	C	T	7043534	3	4	180	1	0	0	0	0	1	0	0	0	2874	864	30	3	539	3	CCDC96	4	7043534	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10		7043534	184110742	21	22725											
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7725465	7725465	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SORCS2	NM_020777	exon19	c.C2466T	p.D822D	TGGGGACGGCTTC	.	50	17	68	0	.	91	T	7725465	C	T	7725465	2	4	180	1	0	0	0	0	0	0	0	1	14931	535	19	1		1	SORCS2	4	7725465	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	681931	7725465	183428811	22	22726											
CXCL2	2920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74964377	74964377	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CXCL2	NM_002089	exon3	c.A249G	p.K83K	ACAAGCTTTCTGC	.	113	44	153	0	.	90	C	74964377	T	C	74964377	2	2	180	1	0	0	0	0	0	0	0	1	4085	1606	56	2		2	CXCL2	4	74964377	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	67238912	74964377	116189899	23	22727											
MTHFD2L	441024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75040279	75040279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MTHFD2L	NM_001144978	exon2	c.T200C	p.I67T	AAGAAATACAGCG	.	78	32	108	0	.	91	C	75040279	T	C	75040279	3	2	180	1	0	0	0	0	1	0	0	0	9930	1406	49	2	206	2	MTHFD2L	4	75040279	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	75902	75040279	116113997	24	22728											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187539094	187539094	+	Silent	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAT1	NM_005245	exon10	c.T8646C	p.N2882N	CTGGTAATTGTCT	.	95	28	107	0	.	34	G	187539094	A	G	187539094	2	3	180	1	0	0	0	0	0	0	0	1	5689	98	4	2		2	FAT1	4	187539094	Silent	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	112498815	187539094	3615182	25	22729											
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	9630121	9630121	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TAS2R1	NM_019599	exon1	c.C24T	p.I8I	AAAATAGATAATG	.	261	119	234	1	.	93	A	9630121	G	A	9630121	2	1	180	1	0	0	0	0	0	0	0	1	15562	932	33	3		3	TAS2R1	5	9630121	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		9630121	171285139	26	22730											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71756953	71756953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF366	NM_152625	exon2	c.A371G	p.Y124C	GAGTCATACTTGG	.	218	56	163	0	.	91	C	71756953	T	C	71756953	3	2	180	1	0	0	0	0	1	0	0	0	17867	1406	49	2	1879	2	ZNF366	5	71756953	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	62126832	71756953	109158307	27	22731											
THBS4	7060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79351761	79351761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	THBS4	NM_003248	exon3	c.A446G	p.Q149R	GCATCCAGGTGGA	.	135	23	85	0	.	90	G	79351761	A	G	79351761	3	3	180	1	0	0	0	0	1	0	0	0	15853	188	7	2	456	2	THBS4	5	79351761	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	7594808	79351761	101563499	28	22732											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140564287	140564287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCDHB16	NM_020957	exon1	c.G2153T	p.R718M	GGAGCAGGGCGGC	.	80	45	88	0	.	92	T	140564287	G	T	140564287	3	4	180	1	0	0	0	0	1	0	0	0	11541	1000	35	3	2155	3	PCDHB16	5	140564287	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	61212526	140564287	40350973	29	22733											
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140595793	140595793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCDHB13	NM_018933	exon1	c.C2098A	p.L700I	TCTTCGCTCTTCC	.	60	28	65	0	.	93	A	140595793	C	A	140595793	3	1	180	1	0	0	0	0	1	0	0	0	11538	797	28	3	2100	3	PCDHB13	5	140595793	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	31506	140595793	40319467	30	22734											
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161569259	161569259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GABRG2	NM_198903	exon8	c.G979A	p.V327I	CTCATTGTCGTCC	.	178	39	168	0	.	95	A	161569259	G	A	161569259	3	1	180	1	0	0	0	0	1	0	0	0	6172	1377	48	3	1009	3	GABRG2	5	161569259	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	20973466	161569259	19346001	31	22735											
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	175819809	175819809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CLTB	NM_007097	exon6	c.T656C	p.L219P	GACATGAGCACCG	.	133	27	93	0	.	90	G	175819809	A	G	175819809	3	3	180	1	0	0	0	0	1	0	0	0	3565	304	11	2	37	2	CLTB	5	175819809	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	14250550	175819809	5095451	32	22736											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12122422	12122422	+	Silent	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HIVEP1	NM_002114	exon4	c.A2394T	p.P798P	AAAACCAGTGGGA	.	211	75	130	0	.	139	T	12122422	A	T	12122422	2	4	180	1	0	0	0	0	0	0	0	1	7186	175	7	4		4	HIVEP1	6	12122422	Silent	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10		12122422	158992645	33	22737											
DEK	7913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18258580	18258580	+	Missense_Mutation	SNP	T	T	C	rs147997771		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DEK	NM_003472	exon3	c.A202G	p.M68V	CTTGCATTGTCAA	.	281	89	218	0	T|1.000;C|0.000	658	C	18258580	T	C	18258580	3	2	180	1	0	0	0	0	1	0	0	0	4424	1493	52	2	961	2	DEK	6	18258580	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	6136158	18258580	152856487	34	22738											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32064613	32064613	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TNXB	NM_019105	exon3	c.G1017A	p.T339T	GCTCCGCGTACCA	.	104	23	97	0	.	90	T	32064613	C	T	32064613	2	4	180	1	0	0	0	0	0	0	0	1	16343	755	27	1		1	TNXB	6	32064613	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	13806033	32064613	139050454	35	22739											
VPS52	6293	ucsc.edu;bcgsc.ca	37	6	33218759	33218759	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	VPS52	NM_022553	exon20	c.G2031A	p.A677A	GGTCAGCGCTCCC	.	44	4	45	0	.	95	T	33218759	C	T	33218759	2	4	180	1	0	0	0	0	0	0	0	1	17211	755	27	1		1	VPS52	6	33218759	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	1154146	33218759	137896308	36	22740											
HMGCLL1	54511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55378944	55378944	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HMGCLL1	NM_019036	exon6	c.C534T	p.S178S	GCTAAAGGATTCA	.	92	49	97	1	.	94	A	55378944	G	A	55378944	2	1	180	1	0	0	0	0	0	0	0	1	7230	987	35	3		3	HMGCLL1	6	55378944	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	22160185	55378944	115736123	37	22741											
DSE	29940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116720771	116720771	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DSE	NM_001080976	exon2	c.A358T	p.I120F	GAGAACATTGAAG	.	78	25	88	0	.	91	T	116720771	A	T	116720771	3	4	180	1	0	0	0	0	1	0	0	0	4774	217	8	4	360	4	DSE	6	116720771	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	61341827	116720771	54394296	38	22742											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160494446	160494446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGF2R	NM_000876	exon34	c.A4892G	p.K1631R	TGGACAAGCAGAC	.	88	25	100	0	.	118	G	160494446	A	G	160494446	3	3	180	1	0	0	0	0	1	0	0	0	7576	72	3	2	5026	2	IGF2R	6	160494446	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	43773675	160494446	10620621	39	22743											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160523558	160523558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGF2R	NM_000876	exon46	c.T6850G	p.F2284V	GTGGGCTTTGACA	.	158	31	192	0	.	118	G	160523558	T	G	160523558	3	3	180	1	0	0	0	0	1	0	0	0	7576	1609	56	5	7032	5	IGF2R	6	160523558	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	29112	160523558	10591509	40	22744											
NUDCD3	23386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44425666	44425666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NUDCD3	NM_015332	exon6	c.G1030T	p.G344C	GCTGGCCTCGGAA	.	66	19	75	0	.	90	A	44425666	C	A	44425666	3	1	180	1	0	0	0	0	1	0	0	0	10724	681	24	3	59	3	NUDCD3	7	44425666	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10		44425666	114712997	41	22745											
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87168617	87168617	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ABCB1	NM_000927	exon20	c.C2364A	p.L788L	GTATCGGAGCCGC	.	46	10	29	0	.	582	T	87168617	G	T	87168617	2	4	180	1	0	0	0	0	0	0	0	1	40	1161	41	3		3	ABCB1	7	87168617	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	42742951	87168617	71970046	42	22746											
PEG10	23089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94293280	94293280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PEG10	NM_001172438	exon2	c.G640A	p.E214K	AAGCTGGAGCGCT	.	62	23	79	0	.	23	A	94293280	G	A	94293280	3	1	180	1	0	0	0	0	1	0	0	0	11719	1175	41	3	646	3	PEG10	7	94293280	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	7124663	94293280	64845383	43	22747											
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138394373	138394373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ATP6V0A4	NM_130841	exon20	c.C2425G	p.H809D	ACCAGTGCAGTCG	.	67	13	85	0	.	91	C	138394373	G	C	138394373	3	2	180	1	0	0	0	0	1	0	0	0	1170	1319	46	4	105	4	ATP6V0A4	7	138394373	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	44101093	138394373	20744290	44	22748											
ZNF467	168544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149462853	149462853	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF467	NM_207336	exon5	c.C738T	p.C246C	CTCCGCGCACGGG	.	116	30	113	1	.	90	A	149462853	G	A	149462853	2	1	180	1	0	0	0	0	0	0	0	1	17924	1079	38	1		1	ZNF467	7	149462853	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	11068480	149462853	9675810	45	22749											
CYP7B1	9420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	65537039	65537039	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CYP7B1	NM_004820	exon2	c.G180T	p.L60L	TAAGTTCAGGACC	.	212	157	105	0	.	93	A	65537039	C	A	65537039	2	1	180	1	0	0	0	0	0	0	0	1	4197	813	29	3		3	CYP7B1	8	65537039	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10		65537039	80826983	46	22750											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144810754	144810754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM83H	NM_198488	exon5	c.C877T	p.R293C	CCATGCGGGCCAG	.	105	34	55	0	.	92	A	144810754	G	A	144810754	3	1	180	1	0	0	0	0	1	0	0	0	5640	1116	39	1	2666	1	FAM83H	8	144810754	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	79273715	144810754	1553268	47	22751											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144885835	144885835	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SCRIB	NM_015356	exon23	c.G3396A	p.E1132E	GATGCCCTCGTCT	.	62	14	45	0	.	228	T	144885835	C	T	144885835	2	4	180	1	0	0	0	0	0	0	0	1	13937	680	24	3		3	SCRIB	8	144885835	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	75081	144885835	1478187	48	22752											
MFSD3	113655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145735205	145735205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MFSD3	NM_138431	exon1	c.G489T	p.W163C	CTCGTGGCCGCAA	.	121	56	53	0	.	69	T	145735205	G	T	145735205	3	4	180	1	0	0	0	0	1	0	0	0	9532	1212	42	3	491	3	MFSD3	8	145735205	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	849370	145735205	628817	49	22753											
ZNF16	7564	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	146157910	146157910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF16	NM_006958	exon3	c.C263A	p.S88X	GCCTGTGATTCCA	.	500	48	239	0	.	95	T	146157910	G	T	146157910	4	4	180	1	0	0	0	0	0	1	0	0	17735	1294	45	3	1789	3	ZNF16	8	146157910	Nonsense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	422705	146157910	206112	50	22754											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128094293	128094293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GAPVD1	NM_015635	exon12	c.G2262T	p.R754S	TGTCAGGGAGGTC	.	72	22	82	0	.	93	T	128094293	G	T	128094293	3	4	180	1	0	0	0	0	1	0	0	0	6239	1223	43	3	2304	3	GAPVD1	9	128094293	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		128094293	13119138	51	22755											
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63195964	63195964	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TMEM26	NM_178505	exon2	c.A234G	p.P78P	TAATGATGGAACG	.	40	12	56	0	.	90	C	63195964	T	C	63195964	2	2	180	1	0	0	0	0	0	0	0	1	16148	1451	51	2		2	TMEM26	10	63195964	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10		63195964	72338783	52	22756											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135015133	135015133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KNDC1	NM_152643	exon17	c.G3118T	p.V1040L	AGGTCCGTAAAAG	.	112	35	101	0	.	229	T	135015133	G	T	135015133	3	4	180	1	0	0	0	0	1	0	0	0	8426	1145	40	1	3184	1	KNDC1	10	135015133	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	71819169	135015133	519614	53	22757											
NAT10	55226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34152419	34152419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NAT10	NM_024662	exon13	c.G1304A	p.S435N	AACAGAGCGCCCA	.	60	16	58	0	.	92	A	34152419	G	A	34152419	3	1	180	1	0	0	0	0	1	0	0	0	10174	971	34	3	1350	3	NAT10	11	34152419	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		34152419	100854097	54	22758											
BRMS1	25855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66109566	66109566	+	Splice_Site	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	BRMS1	NM_015399	exon3	c.139+1G>T	.	GGCTCACCGGAGC	.	54	12	80	0	.	90	A	66109566	C	A	66109566	5	1	180	1	0	0	0	0	0	0	1	0	1516	521	18	3	780	3	BRMS1	11	66109566	Splice_Site	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	31957147	66109566	68896950	55	22759											
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67266192	67266192	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PITPNM1	NM_001130848	exon10	c.G1359A	p.V453V	CGTCTGCACATCC	.	38	4	52	0	.	227	T	67266192	C	T	67266192	2	4	180	1	0	0	0	0	0	0	0	1	11950	697	25	3		3	PITPNM1	11	67266192	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	1156626	67266192	67740324	56	22760											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113103884	113103884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NCAM1	NM_001242607	exon15	c.C1616T	p.P539L	CTTCACCATCCAT	.	78	22	80	0	.	23	T	113103884	C	T	113103884	3	4	180	1	0	0	0	0	1	0	0	0	10202	594	21	3	1589	3	NCAM1	11	113103884	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	45837692	113103884	21902632	57	22761											
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119054109	119054109	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NLRX1	NM_024618	exon10	c.C2889A	p.V963V	CGAGGTCAGGGCC	.	30	6	31	0	.	92	A	119054109	C	A	119054109	2	1	180	1	0	0	0	0	0	0	0	1	10485	813	29	3		3	NLRX1	11	119054109	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	5950225	119054109	15952407	58	22762											
ST14	6768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130058517	130058517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ST14	NM_021978	exon3	c.G334A	p.E112K	TCCACTGAGTTTG	.	52	10	60	0	.	94	A	130058517	G	A	130058517	3	1	180	1	0	0	0	0	1	0	0	0	15210	1291	45	3	344	3	ST14	11	130058517	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	11004408	130058517	4947999	59	22763											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133790932	133790932	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGSF9B	NM_014987	exon18	c.C2688T	p.N896N	GTCCTCGTTCTCC	.	34	10	46	0	.	68	A	133790932	G	A	133790932	2	1	180	1	0	0	0	0	0	0	0	1	7606	1136	40	1		1	IGSF9B	11	133790932	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	3732415	133790932	1215584	60	22764											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737115	4737115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AKAP3	NM_006422	exon4	c.T953A	p.L318Q	TTCTTCAGTAGGA	.	120	35	108	0	.	292	T	4737115	A	T	4737115	3	4	180	1	0	0	0	0	1	0	0	0	452	188	7	4	1616	4	AKAP3	12	4737115	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10		4737115	129114780	61	22765											
SLCO1B3	28234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	21008043	21008043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SLCO1B3	NM_019844	exon4	c.G166A	p.E56K	CAAATAGAAAGGA	.	139	33	143	0	.	155	A	21008043	G	A	21008043	3	1	180	1	0	0	0	0	1	0	0	0	14724	943	33	3	172	3	SLCO1B3	12	21008043	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	16270928	21008043	112843852	62	22766											
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49723688	49723688	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TROAP	NM_005480	exon12	c.C1213T	p.L405L	AGGTCACTGGAGG	.	127	8	121	0	.	91	T	49723688	C	T	49723688	2	4	180	1	0	0	0	0	0	0	0	1	16572	564	20	3		3	TROAP	12	49723688	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	28715645	49723688	84128207	63	22767											
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53223841	53223841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRT79	NM_175834	exon4	c.A821C	p.Q274P	ATCTCCTGGGTCA	.	107	26	114	0	.	72	G	53223841	T	G	53223841	3	3	180	1	0	0	0	0	1	0	0	0	8492	1580	55	5	810	5	KRT79	12	53223841	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	3500153	53223841	80628054	64	22768											
AVIL	10677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58207158	58207158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AVIL	NM_006576	exon3	c.G190C	p.G64R	CCTTCCCGATCCA	.	65	10	106	0	.	514	G	58207158	C	G	58207158	3	3	180	1	0	0	0	0	1	0	0	0	1227	652	23	4	2337	4	AVIL	12	58207158	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	4983317	58207158	75644737	65	22769											
FAM19A2	338811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62148740	62148740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM19A2	NM_178539	exon3	c.A172G	p.I58V	CTTCTATCTTGTT	.	130	37	145	0	.	515	C	62148740	T	C	62148740	3	2	180	1	0	0	0	0	1	0	0	0	5532	1435	50	2	235	2	FAM19A2	12	62148740	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	3941582	62148740	71703155	66	22770											
FGD6	55785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95603889	95603889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FGD6	NM_018351	exon2	c.A1171C	p.N391H	CACTGTTGGATTC	.	85	22	109	0	.	137	G	95603889	T	G	95603889	3	3	180	1	0	0	0	0	1	0	0	0	5837	1812	63	5	3201	5	FGD6	12	95603889	Missense_Mutation	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	33455149	95603889	38248006	67	22771											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124419244	124419244	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DNAH10	NM_207437	exon77	c.C13200T	p.P4400P	CAAACCCAAGGTG	.	105	30	112	0	.	95	T	124419244	C	T	124419244	2	4	180	1	0	0	0	0	0	0	0	1	4598	581	21	3		3	DNAH10	12	124419244	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	28815355	124419244	9432651	68	22772											
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42876851	42876851	+	Silent	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AKAP11	NM_016248	exon8	c.A3969T	p.P1323P	ATTACCACCAAGT	.	132	24	193	0	.	227	T	42876851	A	T	42876851	2	4	180	1	0	0	0	0	0	0	0	1	447	146	6	4		4	AKAP11	13	42876851	Silent	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10		42876851	72293027	69	22773											
POU4F1	5457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	79175699	79175699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	POU4F1	NM_006237	exon2	c.G1111A	p.E371K	AGGCCTCGAGGGA	.	42	8	51	0	.	515	T	79175699	C	T	79175699	3	4	180	1	0	0	0	0	1	0	0	0	12278	893	31	1	152	1	POU4F1	13	79175699	Missense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	36298848	79175699	35994179	70	22774											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	45650881	45650882	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FANCM	NM_020937	exon16	c.4359_4360insA	p.V1453fs	TGCTGTCAAAAAG	.	120	32	148	0	.	569	A	45650882	-	A	45650881	7	5	180	1	0	1	1	0	0	0	0	0	5671	813	29	0	4421	0	FANCM	14	45650881	Frame_Shift_Ins	INS	-	TCGA-O8-A75V-01A-11D-A32G-10		45650881	61698659	71	22775											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70634966	70634966	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SLC8A3	NM_183002	exon2	c.C174T	p.V58V	CAGGATGACACCC	.	76	5	94	0	.	225	A	70634966	G	A	70634966	2	1	180	1	0	0	0	0	0	0	0	1	14708	1277	45	3		3	SLC8A3	14	70634966	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	24984085	70634966	36714574	72	22776											
TRMT61A	115708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103996384	103996384	+	Silent	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRMT61A	NM_152307	exon2	c.T69A	p.G23G	CCATGGTGCAATG	.	42	11	64	0	.	90	A	103996384	T	A	103996384	2	1	180	1	0	0	0	0	0	0	0	1	16566	1683	59	4		4	TRMT61A	14	103996384	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	33361418	103996384	3353156	73	22777											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31325061	31325061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRPM1	NM_001252020	exon21	c.C2834T	p.A945V	GAAATGGCCACGA	.	126	29	170	0	.	94	A	31325061	G	A	31325061	3	1	180	1	0	0	0	0	1	0	0	0	16582	1203	42	3	2122	3	TRPM1	15	31325061	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		31325061	71206331	74	22778											
TGM5	9333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43552276	43552276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TGM5	NM_201631	exon3	c.T410A	p.I137N	AGCAGGATGAACT	.	55	7	42	0	.	90	T	43552276	A	T	43552276	3	4	180	1	0	0	0	0	1	0	0	0	15830	333	12	4	1796	4	TGM5	15	43552276	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	12227215	43552276	58979116	75	22779											
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1676129	1676129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_020825	exon2	c.A502T	p.T168S	TGGAGCACAGAGG	.	95	16	90	0	.	.	T	1676129	A	T	1676129	3	4	180	1	0	0	0	0	1	0	0	0	3846	159	6	4	508	4	CRAMP1L	16	1676129	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10		1676129	88678624	76	22780											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	18852978	18852978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SMG1	NM_015092	exon41	c.C6605A	p.S2202X	AGTCCTGATCTTG	.	184	85	181	0	.	1160	T	18852978	G	T	18852978	4	4	180	1	0	0	0	0	0	1	0	0	14795	1294	45	3	4472	3	SMG1	16	18852978	Nonsense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	17176849	18852978	71501775	77	22781											
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67995581	67995581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	SLC12A4,NS,carcinoma,+1	SLC12A4	NM_001145962	exon2	c.C245G	p.S82W	AGAGACGATACCT	.	51	18	84	0	.	91	C	67995581	G	C	67995581	3	2	180	1	0	0	0	0	1	0	0	0	14385	1059	37	4	3106	4	SLC12A4	16	67995581	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	49142603	67995581	22359172	78	22782											
SRCIN1	80725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36719591	36719591	+	Silent	SNP	A	A	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_025248	exon5	c.T708G	p.A236A	GTTGCGAGCCTCG	.	79	15	63	0	.	.	C	36719591	A	C	36719591	2	2	180	1	0	0	0	0	0	0	0	1	15135	291	11	5		5	SRCIN1	17	36719591	Silent	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10		36719591	44475619	79	22783											
DHX8	1659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41590858	41590858	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DHX8	NM_004941	exon17	c.G2631T	p.T877T	GGTGACGCCTATT	.	77	26	151	0	.	229	T	41590858	G	T	41590858	2	4	180	1	0	0	0	0	0	0	0	1	4515	1074	38	1		1	DHX8	17	41590858	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	4871267	41590858	39604352	80	22784											
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42552196	42552196	+	Splice_Site	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GPATCH8	NM_001002909	exon3	c.120+1G>T	.	ATCTTACCGATTC	.	106	27	112	0	.	94	A	42552196	C	A	42552196	5	1	180	1	0	0	0	0	0	0	1	0	6594	521	18	3	4415	3	GPATCH8	17	42552196	Splice_Site	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	961338	42552196	38643014	81	22785											
NPB	256933	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	79860624	79860624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_148896	exon2	c.A378G	p.X126W	CGCCTGAGCCCGG	.	177	53	159	0	.	.	G	79860624	A	G	79860624	3	3	180	1	0	0	0	0	1	0	0	0	10567	317	11	2	384	2	NPB	17	79860624	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	37308428	79860624	1334586	82	22786											
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14851875	14851875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ANKRD30B	NM_001145029	exon36	c.G3575A	p.S1192N	ATCAAAGTGTCAC	.	120	23	143	0	.	24	A	14851875	G	A	14851875	3	1	180	1	0	0	0	0	1	0	0	0	659	1029	36	3	3717	3	ANKRD30B	18	14851875	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		14851875	63225373	83	22787											
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2290105	2290105	+	Silent	SNP	C	C	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_001101391	exon2	c.G1671C	p.G557G	GTGCTGCCCGCGG	.	121	29	166	0	.	.	G	2290105	C	G	2290105	2	3	180	1	0	0	0	0	0	0	0	1	8816	726	26	4		4	LINGO3	19	2290105	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10		2290105	56838878	84	22788											
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7528840	7528840	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ARHGEF18	NM_001130955	exon12	c.G2208A	p.K736K	CACCAAGAGTAAG	.	80	22	104	0	.	228	A	7528840	G	A	7528840	2	1	180	1	0	0	0	0	0	0	0	1	901	956	33	3		3	ARHGEF18	19	7528840	Silent	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10	5238735	7528840	51600143	85	22789											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9088914	9088914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MUC16	NM_024690	exon1	c.G2901A	p.W967X	CTCTGGCCAAGTT	.	131	35	163	0	.	566	T	9088914	C	T	9088914	4	4	180	1	0	0	0	0	0	1	0	0	9973	740	26	3	40958	3	MUC16	19	9088914	Nonsense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	1560074	9088914	50040069	86	22790											
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16319967	16319967	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AP1M1	NM_001130524	exon5	c.C525A	p.V175V	GGACGTCATCGAG	.	122	25	144	0	.	156	A	16319967	C	A	16319967	2	1	180	1	0	0	0	0	0	0	0	1	734	813	29	3		3	AP1M1	19	16319967	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	7231053	16319967	42809016	87	22791											
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17397348	17397348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_152363	exon9	c.A1835T	p.Q612L	ACATCCAGGCCCG	.	91	25	82	0	.	.	T	17397348	A	T	17397348	3	4	180	1	0	0	0	0	1	0	0	0	632	188	7	4	1869	4	ANKLE1	19	17397348	Missense_Mutation	SNP	A	TCGA-O8-A75V-01A-11D-A32G-10	1077381	17397348	41731635	88	22792											
HIF3A	64344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46815884	46815884	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HIF3A	NM_152795	exon8	c.T999C	p.S333S	GGAGAGTATCGTC	.	97	26	120	1	.	228	C	46815884	T	C	46815884	2	2	180	1	0	0	0	0	0	0	0	1	7105	1635	57	2		2	HIF3A	19	46815884	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10	29418536	46815884	12313099	89	22793											
KRTAP19-1	337882	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	31852477	31852477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRTAP19-1	NM_181607	exon1	c.G160T	p.G54X	CATATCCGTAGCT	.	116	23	106	1	.	68	A	31852477	C	A	31852477	4	1	180	1	0	0	0	0	0	1	0	0	8528	661	23	1	114	1	KRTAP19-1	21	31852477	Nonsense_Mutation	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10		31852477	16277418	90	22794											
HLCS	3141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38128887	38128887	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HLCS	NM_000411	exon11	c.G1965T	p.G655G	GTTGGGCCCTTTG	.	159	44	155	0	.	157	A	38128887	C	A	38128887	2	1	180	1	0	0	0	0	0	0	0	1	7213	726	26	3		3	HLCS	21	38128887	Silent	SNP	C	TCGA-O8-A75V-01A-11D-A32G-10	6276410	38128887	10001008	91	22795											
L3MBTL2	83746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41616796	41616796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	L3MBTL2	NM_031488	exon7	c.G777T	p.W259C	CTTCTGGTGCAAC	.	47	14	61	1	.	92	T	41616796	G	T	41616796	3	4	180	1	0	0	0	0	1	0	0	0	8592	1270	44	3	803	3	L3MBTL2	22	41616796	Missense_Mutation	SNP	G	TCGA-O8-A75V-01A-11D-A32G-10		41616796	9687770	92	22796											
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129813673	129813673	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ENOX2	NM_182314	exon7	c.A390G	p.V130V	CACAAATACTGTT	.	121	65	148	0	.	131	C	129813673	T	C	129813673	2	2	180	1	0	0	0	0	0	0	0	1	5127	1393	49	2		2	ENOX2	23	129813673	Silent	SNP	T	TCGA-O8-A75V-01A-11D-A32G-10		129813673	25456887	93	22797											
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12422877	12422877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	VPS13D	NM_015378	exon51	c.T10243C	p.F3415L	CTTGCATTTGCAC	.	199	103	110	0	.	95	C	12422877	T	C	12422877	3	2	181	1	0	0	0	0	1	0	0	0	17189	1493	52	2	10441	2	VPS13D	1	12422877	Missense_Mutation	SNP	T	TCGA-PD-A5DF-01A-11D-A27I-10		12422877	236827744	1	22798											
HSPG2	3339	hgsc.bcm.edu;mdanderson.org	37	1	22182073	22182073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	HSPG2	NM_005529	exon46	c.T5797C	p.C1933R	CTCGGCACAAGTA	.	16	4	8	0	.	141	G	22182073	A	G	22182073	3	3	181	1	0	0	0	0	1	0	0	0	7430	159	6	2	7586	2	HSPG2	1	22182073	Missense_Mutation	SNP	A	TCGA-PD-A5DF-01A-11D-A27I-10	9759196	22182073	227068548	2	22799											
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145281614	145281614	+	Silent	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NOTCH2NL	NM_203458	exon4	c.C544T	p.L182L	GACAGCCTGTATG	.	2183	249	1284	1	.	211	T	145281614	C	T	145281614	2	4	181	1	0	0	0	0	0	0	0	1	10549	680	24	3		3	NOTCH2NL	1	145281614	Silent	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	123099541	145281614	103969007	3	22800											
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1520727	1520727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	TPO	NM_001206744	exon15	c.G2591T	p.G864V	TCGCAGGTCTCAC	.	116	36	70	0	.	332	T	1520727	G	T	1520727	3	4	181	1	0	0	0	0	1	0	0	0	16407	1261	44	3	2645	3	TPO	2	1520727	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		1520727	241678646	4	22801											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186673528	186673528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	FSIP2	NM_173651	exon17	c.G19762A	p.V6588M	TTTAATGTGATTC	.	67	20	90	0	.	90	A	186673528	G	A	186673528	3	1	181	1	0	0	0	0	1	0	0	0	6075	1377	48	3	19828	3	FSIP2	2	186673528	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	185152801	186673528	56525845	5	22802											
BARD1	580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215617259	215617259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	BARD1	NM_000465	exon7	c.C1589T	p.P530L	TCGACAGGCCGCA	.	80	36	51	0	.	415	A	215617259	G	A	215617259	3	1	181	1	0	0	0	0	1	0	0	0	1312	1000	35	3	764	3	BARD1	2	215617259	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	28943731	215617259	27582114	6	22803											
AAMP	14	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219134700	219134700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	AAMP	NM_001087	exon1	c.C110G	p.P37R	TCCGGCGGACCGG	.	475	172	245	1	.	91	C	219134700	G	C	219134700	3	2	181	1	0	0	0	0	1	0	0	0	17	1116	39	4	1238	4	AAMP	2	219134700	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	3517441	219134700	24064673	7	22804											
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14861791	14861791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	FGD5	NM_152536	exon1	c.G1213T	p.A405S	GGAGCGGCCGAGG	.	84	37	74	0	.	231	T	14861791	G	T	14861791	3	4	181	1	0	0	0	0	1	0	0	0	5836	1203	42	3	1215	3	FGD5	3	14861791	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		14861791	183160639	8	22805											
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	20113881	20113881	+	Silent	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	KAT2B	NM_003884	exon2	c.C360G	p.P120P	CACTCCCCCCAGA	.	87	31	71	0	.	228	G	20113881	C	G	20113881	2	3	181	1	0	0	0	0	0	0	0	1	7982	610	22	4		4	KAT2B	3	20113881	Silent	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	5252090	20113881	177908549	9	22806											
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	54905638	54905638	+	Silent	SNP	C	C	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CACNA2D3	NM_018398	exon18	c.C1699A	p.R567R	GAAGACCGAGATG	.	198	69	141	0	.	138	A	54905638	C	A	54905638	2	1	181	1	0	0	0	0	0	0	0	1	2550	644	23	1		1	CACNA2D3	3	54905638	Silent	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	34791757	54905638	143116792	10	22807											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	64148733	64148742	+	Frame_Shift_Del	DEL	TTCGCAGTTT	TTCGCAGTTT	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	TTCGCAGTTT	TTCGCAGTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PRICKLE2	NM_198859	exon3	c.208_217del	p.70_73del	GCTTGATTCGCAG	.	156	34	121	0	.	95	-	64148742	TTCGCAGTTT	-	64148733	7	5	181	1	0	1	0	1	0	0	0	0	12487	1493	52	0	2341	0	PRICKLE2	3	64148733	Frame_Shift_Del	DEL	TTCGCAGTTT	TCGA-PD-A5DF-01A-11D-A27I-10	9243095	64148733	133873697	11	22808											
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121994752	121994752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CASR	NM_001178065	exon5	c.A1471G	p.I491V	TATTCCATCATCA	.	241	96	168	0	.	97	G	121994752	A	G	121994752	3	3	181	1	0	0	0	0	1	0	0	0	2682	217	8	2	1485	2	CASR	3	121994752	Missense_Mutation	SNP	A	TCGA-PD-A5DF-01A-11D-A27I-10	57846019	121994752	76027678	12	22809											
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7714544	7714544	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SORCS2	NM_020777	exon15	c.G1953A	p.E651E	CGGCGAGGAGGAC	.	170	70	87	0	.	91	A	7714544	G	A	7714544	2	1	181	1	0	0	0	0	0	0	0	1	14931	991	35	3		3	SORCS2	4	7714544	Silent	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		7714544	183439732	13	22810											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67591127	67591129	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	PIK3R1,bladder,carcinoma,-1	PIK3R1	NM_181523	exon13	c.1720_1722del	p.574_574del	CAGCTGAGAAAGA	.	108	65	101	0	.	4332	-	67591129	AGA	-	67591127	7	5	181	1	0	1	0	1	0	0	0	0	11918	296	11	0	1896	0	PIK3R1	5	67591127	In_Frame_Del	DEL	AGA	TCGA-PD-A5DF-01A-11D-A27I-10		67591127	113324133	14	22811											
NME5	8382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137465065	137465065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NME5	NM_003551	exon3	c.G222A	p.M74I	AGAACTCATGTAA	.	135	41	144	0	.	115	T	137465065	C	T	137465065	3	4	181	1	0	0	0	0	1	0	0	0	10494	826	29	3	432	3	NME5	5	137465065	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	69873938	137465065	43450195	15	22812											
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97561726	97561726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	KLHL32	NM_052904	exon7	c.G695A	p.R232H	ACATCCGCTTTGG	.	180	95	183	0	.	94	A	97561726	G	A	97561726	3	1	181	1	0	0	0	0	1	0	0	0	8386	1087	38	1	717	1	KLHL32	6	97561726	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		97561726	73553341	16	22813											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117237178	117237178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	RFX6	NM_173560	exon8	c.C788T	p.T263M	TTGATACGCTCAT	.	143	53	104	0	.	93	T	117237178	C	T	117237178	3	4	181	1	0	0	0	0	1	0	0	0	13267	536	19	1	818	1	RFX6	6	117237178	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	19675452	117237178	53877889	17	22814											
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151694605	151694605	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZBTB2	NM_020861	exon2	c.G168C	p.Q56H	CCTGGTCTGATGG	.	256	86	153	0	.	91	G	151694605	C	G	151694605	3	3	181	1	0	0	0	0	1	0	0	0	17525	912	32	4	1384	4	ZBTB2	6	151694605	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	34457427	151694605	19420462	18	22815											
SNX9	51429	broad.mit.edu;bcgsc.ca	37	6	158296186	158296186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SNX9	NM_016224	exon4	c.C278T	p.S93L	GTTCGTCGGCTGC	.	171	59	118	1	.	226	T	158296186	C	T	158296186	3	4	181	1	0	0	0	0	1	0	0	0	14909	893	31	1	292	1	SNX9	6	158296186	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	6601581	158296186	12818881	19	22816											
MTERF	7978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	91503047	91503053	+	Frame_Shift_Del	DEL	GAATCCA	GAATCCA	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	GAATCCA	GAATCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MTERF	NM_006980	exon3	c.1055_1061del	p.352_354del	ATGCTTGAATCCA	.	72	11	75	0	.	90	-	91503053	GAATCCA	-	91503047	7	5	181	1	0	1	0	1	0	0	0	0	9918	1294	45	0	142	0	MTERF	7	91503047	Frame_Shift_Del	DEL	GAATCCA	TCGA-PD-A5DF-01A-11D-A27I-10		91503047	67635616	20	22817											
ZNF3	7551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	99662525	99662525	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZNF3	NM_017715	exon6	c.C282T	p.H94H	ACAGACGTGTATC	.	214	64	100	0	.	91	A	99662525	G	A	99662525	2	1	181	1	0	0	0	0	0	0	0	1	17826	1136	40	1		1	ZNF3	7	99662525	Silent	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	8159478	99662525	59476138	21	22818											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149523815	149523815	+	Silent	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_198455	exon103	c.C14625G	p.T4875T	CTGCACCCAGCAT	.	37	11	24	0	.	.	G	149523815	C	G	149523815	2	3	181	1	0	0	0	0	0	0	0	1	15188	610	22	4		4	SSPO	7	149523815	Silent	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	49861290	149523815	9614848	22	22819											
EN2	2020	hgsc.bcm.edu;mdanderson.org	37	7	155251239	155251239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EN2	NM_001427	exon1	c.C167A	p.A56E	TGCAGGCGCCCGG	.	12	6	13	0	.	90	A	155251239	C	A	155251239	3	1	181	1	0	0	0	0	1	0	0	0	5110	768	27	1	169	1	EN2	7	155251239	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	5727424	155251239	3887424	23	22820											
TTPA	7274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	63973814	63973814	+	Silent	SNP	T	T	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	TTPA	NM_000370	exon5	c.A834G	p.Q278Q	TTCTCATTGAATG	.	45	17	31	0	.	90	C	63973814	T	C	63973814	2	2	181	1	0	0	0	0	0	0	0	1	16733	1490	52	2		2	TTPA	8	63973814	Silent	SNP	T	TCGA-PD-A5DF-01A-11D-A27I-10		63973814	82390208	24	22821											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121381587	121381587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	COL14A1	NM_021110	exon47	c.G5174A	p.R1725Q	AGAGTCGGCCTGG	.	40	13	22	0	.	543	A	121381587	G	A	121381587	3	1	181	1	0	0	0	0	1	0	0	0	3671	1116	39	1	5356	1	COL14A1	8	121381587	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	57407773	121381587	24982435	25	22822											
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21901356	21901356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MLLT10	NM_001195626	exon5	c.G485T	p.C162F	ATGGATGTCGACA	.	48	20	50	0	.	658	T	21901356	G	T	21901356	3	4	181	1	0	0	0	0	1	0	0	0	9626	1377	48	3	503	3	MLLT10	10	21901356	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		21901356	113633391	26	22823											
OR51B6	390058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5372775	5372775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	OR51B6	NM_001004750	exon1	c.C38T	p.T13I	AGCTTACTGGCTT	.	229	87	148	0	.	70	T	5372775	C	T	5372775	3	4	181	1	0	0	0	0	1	0	0	0	11092	565	20	3	40	3	OR51B6	11	5372775	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10		5372775	129633741	27	22824											
EED	8726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85975252	85975260	+	In_Frame_Del	DEL	CTGGTGGCA	CTGGTGGCA	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	CTGGTGGCA	CTGGTGGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EED	NM_003797	exon7	c.673_681del	p.225_227del	GACACTCTGGTGG	.	118	15	113	0	.	227	-	85975260	CTGGTGGCA	-	85975252	7	5	181	1	0	1	0	1	0	0	0	0	4922	912	32	0	699	0	EED	11	85975252	In_Frame_Del	DEL	CTGGTGGCA	TCGA-PD-A5DF-01A-11D-A27I-10	80602477	85975252	49031264	28	22825			1	18		2	2	13	N	T_CTGGTGGCA	1.899406e-05
EED	8726	ucsc.edu;bcgsc.ca	37	11	85975264	85975264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EED	NM_003797	exon7	c.T685G	p.F229V	GCAATATTTGGAG	.	135	25	129	0	.	227	G	85975264	T	G	85975264	3	3	181	1	0	0	0	0	1	0	0	0	4922	1493	52	5	711	5	EED	11	85975264	Missense_Mutation	SNP	T	TCGA-PD-A5DF-01A-11D-A27I-10	12	85975264	49031252	29	22826			1	18		2	2	13	N	T_CTGGTGGCA	1.899406e-05
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117860190	117860190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	IL10RA	NM_001558	exon3	c.C222A	p.N74K	CTCCAACTGTAGC	.	308	100	231	0	.	91	A	117860190	C	A	117860190	3	1	181	1	0	0	0	0	1	0	0	0	7620	564	20	3	232	3	IL10RA	11	117860190	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	31884926	117860190	17146326	30	22827											
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29626033	29626033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	OVCH1	NM_183378	exon15	c.C1604T	p.S535F	TTTAAAGACTCTG	.	51	17	63	0	.	210	A	29626033	G	A	29626033	3	1	181	1	0	0	0	0	1	0	0	0	11323	942	33	3	1856	3	OVCH1	12	29626033	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		29626033	104225862	31	22828											
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132512744	132512744	+	Silent	SNP	G	G	T	rs34531099	byfrequency;alternate_allele	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EP400	NM_015409	exon27	c.G5292T	p.A1764A	GCCAGCGCACAGT	.	329	141	135	0	G|0.997;A|0.003	520	T	132512744	G	T	132512744	2	4	181	1	0	0	0	0	0	0	0	1	5149	1074	38	1		1	EP400	12	132512744	Silent	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	102886711	132512744	1339151	32	22829											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51223097	51223097	+	Silent	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	AP4E1	NM_007347	exon7	c.C798T	p.H266H	TTACCACAGTGTG	.	107	40	70	0	.	90	T	51223097	C	T	51223097	2	4	181	1	0	0	0	0	0	0	0	1	752	477	17	3		3	AP4E1	15	51223097	Silent	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10		51223097	51308295	33	22830											
CORO2B	10391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69011111	69011111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CORO2B	NM_006091	exon9	c.G1042T	p.G348C	CTCAAGGGCCTGA	.	175	64	78	0	.	158	T	69011111	G	T	69011111	3	4	181	1	0	0	0	0	1	0	0	0	3757	1232	43	3	1076	3	CORO2B	15	69011111	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	17788014	69011111	33520281	34	22831											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19452981	19452981	+	Silent	SNP	A	A	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SLC47A1	NM_018242	exon5	c.A489T	p.P163P	CATTCCAGCTCTT	.	102	65	94	0	.	90	T	19452981	A	T	19452981	2	4	181	1	0	0	0	0	0	0	0	1	14647	175	7	4		4	SLC47A1	17	19452981	Silent	SNP	A	TCGA-PD-A5DF-01A-11D-A27I-10		19452981	61742229	35	22832											
NLE1	54475	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33467033	33467033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NLE1	NM_018096	exon3	c.C215T	p.S72L	CCCAGTGAGGAGA	.	288	94	175	1	.	290	A	33467033	G	A	33467033	3	1	181	1	0	0	0	0	1	0	0	0	10460	1294	45	3	1286	3	NLE1	17	33467033	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	14014052	33467033	47728177	36	22833											
PPP1R1B	84152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37792089	37792089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PPP1R1B	NM_032192	exon7	c.C586T	p.R196C	CCTCAGCGCCCTT	.	75	27	29	0	.	658	T	37792089	C	T	37792089	3	4	181	1	0	0	0	0	1	0	0	0	12368	768	27	1	612	1	PPP1R1B	17	37792089	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	4325056	37792089	43403121	37	22834											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74289942	74289954	+	Frame_Shift_Del	DEL	CCAGATCCTGATG	CCAGATCCTGATG	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	CCAGATCCTGATG	CCAGATCCTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	QRICH2	NM_032134	exon4	c.356_368del	p.119_123del	GTGCCACCAGATC	.	115	22	76	0	.	94	-	74289954	CCAGATCCTGATG	-	74289942	7	5	181	1	0	1	0	1	0	0	0	0	12880	507	18	0	4687	0	QRICH2	17	74289942	Frame_Shift_Del	DEL	CCAGATCCTGATG	TCGA-PD-A5DF-01A-11D-A27I-10	36497853	74289942	6905268	38	22835											
CHST9	83539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24497007	24497007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CHST9	NM_031422	exon6	c.A548T	p.Q183L	AACTCCTGAAGGA	.	88	19	73	1	.	93	A	24497007	T	A	24497007	3	1	181	1	0	0	0	0	1	0	0	0	3411	1580	55	4	787	4	CHST9	18	24497007	Missense_Mutation	SNP	T	TCGA-PD-A5DF-01A-11D-A27I-10		24497007	53580241	39	22836											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	51025826	51025826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	DCC	NM_005215	exon27	c.C4057G	p.P1353A	CCTCCACCAATGA	.	290	90	204	0	.	225	G	51025826	C	G	51025826	3	3	181	1	0	0	0	0	1	0	0	0	4282	507	18	4	4163	4	DCC	18	51025826	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	26528819	51025826	27051422	40	22837											
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8520429	8520429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	HNRNPM	NM_031203	exon2	c.A254G	p.Q85R	AATGGCAGTCACT	.	117	39	70	0	.	68	G	8520429	A	G	8520429	3	3	181	1	0	0	0	0	1	0	0	0	7271	188	7	2	260	2	HNRNPM	19	8520429	Missense_Mutation	SNP	A	TCGA-PD-A5DF-01A-11D-A27I-10		8520429	50608554	41	22838											
PLEKHA4	57664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49364729	49364729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PLEKHA4	NM_001161354	exon5	c.G295A	p.V99I	GCAGGACGCTGCC	.	36	10	22	0	.	227	T	49364729	C	T	49364729	3	4	181	1	0	0	0	0	1	0	0	0	12058	536	19	1	2108	1	PLEKHA4	19	49364729	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	40844300	49364729	9764254	42	22839											
ACPT	93650	hgsc.bcm.edu;mdanderson.org	37	19	51298384	51298384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ACPT	NM_033068	exon11	c.G1250A	p.G417E	GACCAGGGTGCCT	.	14	10	8	0	.	90	A	51298384	G	A	51298384	3	1	181	1	0	0	0	0	1	0	0	0	168	1232	43	3	1292	3	ACPT	19	51298384	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10	1933655	51298384	7830599	43	22840											
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58565260	58565260	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZSCAN1	NM_182572	exon6	c.1068delC	p.G356fs	CAAGGGCCCCCGG	.	155	54	101	0	.	92	-	58565260	C	-	58565260	7	5	181	1	0	1	0	1	0	0	0	0	18223	726	26	0	1082	0	ZSCAN1	19	58565260	Frame_Shift_Del	DEL	C	TCGA-PD-A5DF-01A-11D-A27I-10	7266876	58565260	563723	44	22841											
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	61937235	61937235	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	COL20A1	NM_020882	exon5	c.G340T	p.E114X	GCAGTTGAGGATC	.	125	19	41	0	.	90	T	61937235	G	T	61937235	4	4	181	1	0	0	0	0	0	1	0	0	3679	1291	45	3	354	3	COL20A1	20	61937235	Nonsense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		61937235	1088285	45	22842											
POTEH	23784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16287641	16287641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	POTEH	NM_001136213	exon1	c.C245T	p.T82I	CCAGAAGTGCCCA	.	550	152	368	0	.	1	A	16287641	G	A	16287641	3	1	181	1	0	0	0	0	1	0	0	0	12267	1029	36	3	1432	3	POTEH	22	16287641	Missense_Mutation	SNP	G	TCGA-PD-A5DF-01A-11D-A27I-10		16287641	35016925	46	22843											
YPEL1	29799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22064931	22064931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	YPEL1	NM_013313	exon2	c.G103A	p.E35K	TGAGCTCGTCATG	.	398	43	231	0	.	90	T	22064931	C	T	22064931	3	4	181	1	0	0	0	0	1	0	0	0	17486	893	31	1	272	1	YPEL1	22	22064931	Missense_Mutation	SNP	C	TCGA-PD-A5DF-01A-11D-A27I-10	5777290	22064931	29239635	47	22844											
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50090667	50090667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CCNB3	NM_033031	exon10	c.A3853G	p.I1285V	CGCTACATCTGCG	.	183	22	131	0	.	482	G	50090667	A	G	50090667	3	3	181	1	0	0	0	0	1	0	0	0	2914	217	8	2	3887	2	CCNB3	23	50090667	Missense_Mutation	SNP	A	TCGA-PD-A5DF-01A-11D-A27I-10		50090667	105179893	48	22845											
ZNF280C	55609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129349844	129349844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZNF280C	NM_017666	exon14	c.T1759A	p.S587T	CTTTGGACTTAGC	.	222	89	155	0	.	132	T	129349844	A	T	129349844	3	4	181	1	0	0	0	0	1	0	0	0	17813	275	10	4	478	4	ZNF280C	23	129349844	Missense_Mutation	SNP	A	TCGA-PD-A5DF-01A-11D-A27I-10	79259177	129349844	25920716	49	22846											
MMEL1	79258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2524344	2524344	+	Silent	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MMEL1	NM_033467	exon20	c.C1929T	p.H643H	CCGGAAGTGCTGG	.	76	36	65	0	.	90	A	2524344	G	A	2524344	2	1	182	1	0	0	0	0	0	0	0	1	9646	1020	36	3		3	MMEL1	1	2524344	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10		2524344	246726277	1	22847											
AIM1L	55057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26655355	26655355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AIM1L	NM_001039775	exon16	c.G4324A	p.E1442K	AAGGCTCTGAAAA	.	59	28	57	0	.	91	T	26655355	C	T	26655355	3	4	182	1	0	0	0	0	1	0	0	0	431	922	32	3	681	3	AIM1L	1	26655355	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	24131011	26655355	222595266	2	22848											
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55527146	55527146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PCSK9	NM_174936	exon11	c.G1780A	p.A594T	AGGGAGGCCAGCA	.	176	76	135	0	.	93	A	55527146	G	A	55527146	3	1	182	1	0	0	0	0	1	0	0	0	11606	1203	42	3	1822	3	PCSK9	1	55527146	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	28871791	55527146	193723475	3	22849											
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63998376	63998376	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EFCAB7	NM_032437	exon4	c.C435T	p.A145A	AAATGCCATAATA	.	316	123	274	1	.	68	T	63998376	C	T	63998376	2	4	182	1	0	0	0	0	0	0	0	1	4940	581	21	3		3	EFCAB7	1	63998376	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	8471230	63998376	185252245	4	22850											
SEP15	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87379756	87379756	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SEP15	.	.	.	.	CGCCGGCACCAGA	.	78	25	63	0	.	68	A	87379756	C	A	87379756	2	1	182	1	0	0	0	0	0	0	0	1	14053	697	25	3		3	SEP15	1	87379756	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	23381380	87379756	161870865	5	22851											
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100350158	100350158	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AGL	NM_000644	exon20	c.T2580C	p.V860V	CGCTGTTGGAATT	.	188	69	173	0	.	92	C	100350158	T	C	100350158	2	2	182	1	0	0	0	0	0	0	0	1	384	1799	63	2		2	AGL	1	100350158	Silent	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	12970402	100350158	148900463	6	22852											
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118065534	118065534	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAN1A2	NM_006699	exon13	c.A1881G	p.L627L	TGTGTTACATTTA	.	78	43	76	0	.	90	G	118065534	A	G	118065534	2	3	182	1	0	0	0	0	0	0	0	1	9211	388	14	2		2	MAN1A2	1	118065534	Silent	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	17715376	118065534	131185087	7	22853											
HRNR	388697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152187996	152187996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HRNR	NM_001009931	exon3	c.G6109A	p.G2037S	ACTGACCTGAGCT	.	407	73	231	0	.	93	T	152187996	C	T	152187996	3	4	182	1	0	0	0	0	1	0	0	0	7359	681	24	3	2447	3	HRNR	1	152187996	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	34122462	152187996	97062625	8	22854											
FLG	2312	ucsc.edu;bcgsc.ca	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FLG	NM_002016	exon3	c.C7281A	p.A2427A	TCCATGGGCGGAC	.	236	80	136	2	.	106	T	152280081	G	T	152280081	2	4	182	1	0	0	0	0	0	0	0	1	5922	1219	43	3		3	FLG	1	152280081	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	92085	152280081	96970540	9	22855											
OR10K1	391109	ucsc.edu;bcgsc.ca	37	1	158435495	158435495	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	OR10K1	NM_001004473	exon1	c.C144A	p.T48T	TTCCACCATTGTG	.	448	257	277	2	.	69	A	158435495	C	A	158435495	2	1	182	1	0	0	0	0	0	0	0	1	10913	581	21	3		3	OR10K1	1	158435495	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	6155414	158435495	90815126	10	22856											
FASLG	356	ucsc.edu;bcgsc.ca	37	1	172628546	172628547	+	Missense_Mutation	DNP	CC	CC	GA	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	p.P69E	CCGCTGCCACCCC	.	254	153	147	2	.	.	GA	172628547	CC	GA	172628546	3	3	182	1	0	0	0	0	1	0	0	0	5682	739	26	4	207	4	FASLG	1	172628546	Missense_Mutation	DNP	CC	TCGA-QA-A7B7-01A-11D-A32G-10	14193051	172628546	76622075	11	22857											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186017888	186017888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HMCN1	NM_031935	exon42	c.A6494G	p.Q2165R	ATGCTCAGGTTCA	.	129	27	86	0	.	113	G	186017888	A	G	186017888	3	3	182	1	0	0	0	0	1	0	0	0	7220	188	7	2	6660	2	HMCN1	1	186017888	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	13389342	186017888	63232733	12	22858											
IPO9	55705	broad.mit.edu;bcgsc.ca	37	1	201837827	201837827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IPO9	NM_018085	exon16	c.T1907C	p.I636T	CCCAGATTGAAGC	.	112	62	47	2	.	228	C	201837827	T	C	201837827	3	2	182	1	0	0	0	0	1	0	0	0	7799	1493	52	2	1969	2	IPO9	1	201837827	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	15819939	201837827	47412794	13	22859											
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217915436	217915436	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SPATA17	NM_138796	exon6	c.A515T	p.K172M	GCACAAAGCAGGT	.	69	42	50	0	.	69	T	217915436	A	T	217915436	3	4	182	1	0	0	0	0	1	0	0	0	15001	72	3	4	537	4	SPATA17	1	217915436	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	16077609	217915436	31335185	14	22860											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236720605	236720605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HEATR1	NM_018072	exon37	c.G5245A	p.E1749K	CCAGCTCGCTGGT	.	203	64	129	0	.	93	T	236720605	C	T	236720605	3	4	182	1	0	0	0	0	1	0	0	0	7027	893	31	1	1225	1	HEATR1	1	236720605	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	18805169	236720605	12530016	15	22861											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247031037	247031037	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AHCTF1	NM_015446	exon25	c.C3192A	p.I1064I	ATTGTTGATGAAA	.	381	213	242	1	.	97	T	247031037	G	T	247031037	2	4	182	1	0	0	0	0	0	0	0	1	408	1280	45	3		3	AHCTF1	1	247031037	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	10310432	247031037	2219584	16	22862											
OR14A16	284532	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247978677	247978677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	OR14A16	NM_001001966	exon1	c.G355A	p.D119N	AGCGGTCAAAGGA	.	151	102	103	1	.	46	T	247978677	C	T	247978677	3	4	182	1	0	0	0	0	1	0	0	0	10945	826	29	3	578	3	OR14A16	1	247978677	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	947640	247978677	1271944	17	22863											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31010123	31010123	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CAPN13	NM_144575	exon2	c.C69A	p.T23T	CCGCAAGGTGGTA	.	154	63	137	0	.	136	T	31010123	G	T	31010123	2	4	182	1	0	0	0	0	0	0	0	1	2626	987	35	3		3	CAPN13	2	31010123	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10		31010123	212189250	18	22864											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54859797	54859797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SPTBN1	NM_003128	exon17	c.C3659T	p.A1220V	TGGACGCCAATGA	.	128	50	85	0	.	140	T	54859797	C	T	54859797	3	4	182	1	0	0	0	0	1	0	0	0	15118	739	26	3	3834	3	SPTBN1	2	54859797	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	23849674	54859797	188339576	19	22865											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71654499	71654499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF638	NM_014497	exon24	c.G5500A	p.V1834I	GAGAATGTTATGG	.	26	8	21	0	.	94	A	71654499	G	A	71654499	3	1	182	1	0	0	0	0	1	0	0	0	18052	1377	48	3	5590	3	ZNF638	2	71654499	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	16794702	71654499	171544874	20	22866											
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110015366	110015366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SH3RF3	NM_001099289	exon4	c.C1266G	p.D422E	TGGAGACCTTGCT	.	60	28	40	0	.	24	G	110015366	C	G	110015366	3	3	182	1	0	0	0	0	1	0	0	0	14260	506	18	4	1280	4	SH3RF3	2	110015366	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	38360867	110015366	133184007	21	22867											
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136567036	136567036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LCT	NM_002299	exon8	c.G2881A	p.A961T	GATCGGCATCCAG	.	84	30	57	0	.	101	T	136567036	C	T	136567036	3	4	182	1	0	0	0	0	1	0	0	0	8693	710	25	3	2942	3	LCT	2	136567036	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	26551670	136567036	106632337	22	22868											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	152497166	152497166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NEB	NM_004543	exon61	c.A8388C	p.E2796D	ATAGCCTTCTTTG	.	119	47	109	0	.	145	G	152497166	T	G	152497166	3	3	182	1	0	0	0	0	1	0	0	0	10302	1606	56	5	17786	5	NEB	2	152497166	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	15930130	152497166	90702207	23	22869											
GALNT5	11227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115721	158115721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GALNT5	NM_014568	exon1	c.T1127C	p.V376A	ATAGAGTGCCACT	.	126	52	114	1	.	290	C	158115721	T	C	158115721	3	2	182	1	0	0	0	0	1	0	0	0	6216	1696	59	2	1129	2	GALNT5	2	158115721	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	5618555	158115721	85083652	24	22870											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179611817	179611817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TTN	NM_133379	exon46	c.G15310A	p.E5104K	ATCGCTCTAGAGT	.	217	96	182	2	.	636	T	179611817	C	T	179611817	3	4	182	1	0	0	0	0	1	0	0	0	16732	922	32	3	94987	3	TTN	2	179611817	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	21496096	179611817	63587556	25	22871											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196620969	196620969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNAH7	NM_018897	exon62	c.G11474A	p.S3825N	ATGCTGCTAACCA	.	327	130	273	0	.	102	T	196620969	C	T	196620969	3	4	182	1	0	0	0	0	1	0	0	0	4606	797	28	3	616	3	DNAH7	2	196620969	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	17009152	196620969	46578404	26	22872											
WNT6	7475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219735837	219735837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	WNT6	NM_006522	exon2	c.G169T	p.A57S	TGCCAGGCTGAGC	.	107	47	87	0	.	564	T	219735837	G	T	219735837	3	4	182	1	0	0	0	0	1	0	0	0	17390	1203	42	3	175	3	WNT6	2	219735837	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	23114868	219735837	23463536	27	22873											
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241569984	241569984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GPR35	NM_001195382	exon6	c.C708A	p.D236E	CACCGACGTGGGG	.	71	25	68	1	.	93	A	241569984	C	A	241569984	3	1	182	1	0	0	0	0	1	0	0	0	6690	535	19	1	617	1	GPR35	2	241569984	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	21834147	241569984	1629389	28	22874											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85935378	85935378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CADM2	NM_001167675	exon5	c.C430A	p.P144T	TCATCACCAGTTA	.	249	88	244	0	.	228	A	85935378	C	A	85935378	3	1	182	1	0	0	0	0	1	0	0	0	2567	507	18	3	488	3	CADM2	3	85935378	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		85935378	112087052	29	22875											
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89391190	89391190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EPHA3	NM_005233	exon5	c.G1256T	p.S419I	AGCTGAGCTCCCC	.	81	39	62	0	.	1500	T	89391190	G	T	89391190	3	4	182	1	0	0	0	0	1	0	0	0	5168	971	34	3	1274	3	EPHA3	3	89391190	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	3455812	89391190	108631240	30	22876											
DZIP3	9666	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108407750	108407750	+	Silent	SNP	C	C	T	rs200425501		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DZIP3	NM_014648	exon31	c.C3495T	p.C1165C	GCCTTGCGCTCAC	.	253	94	261	1	C|0.999;T|0.001	91	T	108407750	C	T	108407750	2	4	182	1	0	0	0	0	0	0	0	1	4865	776	27	1		1	DZIP3	3	108407750	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	19016560	108407750	89614680	31	22877											
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193175188	193175188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ATP13A4	NM_032279	exon15	c.C1741T	p.P581S	TGCAGGGCTTAAC	.	197	81	169	0	.	92	A	193175188	G	A	193175188	3	1	182	1	0	0	0	0	1	0	0	0	1126	1203	42	3	1913	3	ATP13A4	3	193175188	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	84767438	193175188	4847242	32	22878											
CHIC2	26511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54915246	54915246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CHIC2	NM_012110	exon3	c.A206G	p.N69S	ACTCTGTTGATGC	.	208	90	183	0	.	1082	C	54915246	T	C	54915246	3	2	182	1	0	0	0	0	1	0	0	0	3344	1725	60	2	307	2	CHIC2	4	54915246	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10		54915246	136239030	33	22879											
TMPRSS11D	9407	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68693026	68693026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TMPRSS11D	NM_004262	exon8	c.C905A	p.P302H	GAGCCAGGTGGAA	.	194	75	141	1	.	91	T	68693026	G	T	68693026	3	4	182	1	0	0	0	0	1	0	0	0	16238	1000	35	3	363	3	TMPRSS11D	4	68693026	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	13777780	68693026	122461250	34	22880											
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6737736	6737736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PAPD7	NM_001171805	exon2	c.C80G	p.P27R	TTTGGCCGACGGC	.	282	110	266	0	.	69	G	6737736	C	G	6737736	3	3	182	1	0	0	0	0	1	0	0	0	11426	652	23	4	82	4	PAPD7	5	6737736	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		6737736	174177524	35	22881											
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11159716	11159716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CTNND2	NM_001332	exon12	c.G2131A	p.V711M	GCAGCACCTGTGA	.	113	45	96	1	.	293	T	11159716	C	T	11159716	3	4	182	1	0	0	0	0	1	0	0	0	4020	507	18	3	1590	3	CTNND2	5	11159716	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	4421980	11159716	169755544	36	22882											
RAI14	26064	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34807938	34807938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RAI14	NM_001145525	exon8	c.G364T	p.G122W	AGCTCTGGGAAAA	.	222	95	196	2	.	91	T	34807938	G	T	34807938	3	4	182	1	0	0	0	0	1	0	0	0	13008	1348	47	3	438	3	RAI14	5	34807938	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	23648222	34807938	146107322	37	22883											
LOX	4015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121411127	121411127	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LOX	NM_002317	exon3	c.T850A	p.Y284N	AGGAATATCTTGG	.	220	90	202	0	.	650	T	121411127	A	T	121411127	3	4	182	1	0	0	0	0	1	0	0	0	8898	449	16	4	423	4	LOX	5	121411127	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	86603189	121411127	59504133	38	22884											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140811445	140811445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PCDHGA12	NM_032094	exon1	c.C1119A	p.D373E	AAATGACCAAGAT	.	74	37	64	0	.	27	A	140811445	C	A	140811445	3	1	182	1	0	0	0	0	1	0	0	0	11553	506	18	3	1121	3	PCDHGA12	5	140811445	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	19400318	140811445	40103815	39	22885											
KIF4B	285643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154394947	154394947	+	Missense_Mutation	SNP	G	G	A	rs199913629	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIF4B	NM_001099293	exon1	c.G1528A	p.A510T	TCTGACGCTTTTA	.	88	45	61	2	G|0.999;T|0.001	1	A	154394947	G	A	154394947	3	1	182	1	0	0	0	0	1	0	0	0	8304	1087	38	1	1530	1	KIF4B	5	154394947	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	13583502	154394947	26520313	40	22886											
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26032226	26032226	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HIST1H3B	NM_003537	exon1	c.G63T	p.L21L	GGTAGCCAGCTGC	.	52	19	35	0	.	92	A	26032226	C	A	26032226	2	1	182	1	0	0	0	0	0	0	0	1	7156	581	21	3		3	HIST1H3B	6	26032226	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		26032226	145082841	41	22887											
KCNQ5	56479	broad.mit.edu;mdanderson.org	37	6	73331992	73331992	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KCNQ5	NM_001160132	exon1	c.G75T	p.A25A	GGCGGCGGCGGCG	.	14	6	12	0	.	158	T	73331992	G	T	73331992	2	4	182	1	0	0	0	0	0	0	0	1	8086	1103	39	1		1	KCNQ5	6	73331992	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	47299766	73331992	97783075	42	22888											
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88854612	88854612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CNR1	NM_001160258	exon4	c.A382T	p.T128S	TGAAGGTGCCCAG	.	70	26	56	0	.	92	A	88854612	T	A	88854612	3	1	182	1	0	0	0	0	1	0	0	0	3631	1696	59	4	1040	4	CNR1	6	88854612	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	15522620	88854612	82260455	43	22889											
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126202239	126202239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NCOA7	NM_001199619	exon7	c.C463A	p.L155I	CAGGTCCTTTTTG	.	230	95	198	0	.	227	A	126202239	C	A	126202239	3	1	182	1	0	0	0	0	1	0	0	0	10234	681	24	3	481	3	NCOA7	6	126202239	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	37347627	126202239	44912828	44	22890											
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146708066	146708066	+	Missense_Mutation	SNP	C	C	A	rs201399008	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRM1	NM_000838	exon7	c.C1643A	p.T548K	TTTGCACGGCCTG	.	120	49	84	0	.	1080	A	146708066	C	A	146708066	3	1	182	1	0	0	0	0	1	0	0	0	6796	536	19	1	1665	1	GRM1	6	146708066	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	20505827	146708066	24407001	45	22891											
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	169639701	169639701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	THBS2	NM_003247	exon8	c.C1122A	p.C374X	GTGGAGGCAGGAA	.	31	14	46	0	.	95	T	169639701	G	T	169639701	4	4	182	1	0	0	0	0	0	1	0	0	15851	1195	42	3	2460	3	THBS2	6	169639701	Nonsense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	22931635	169639701	1475366	46	22892											
IQCE	23288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2649728	2649728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IQCE	NM_152558	exon22	c.G2020A	p.V674I	GATGACGTCAACT	.	94	37	65	0	.	226	A	2649728	G	A	2649728	3	1	182	1	0	0	0	0	1	0	0	0	7806	1145	40	1	2106	1	IQCE	7	2649728	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10		2649728	156488935	47	22893											
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449530	128449530	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC136	NM_022742	exon11	c.A1632G	p.T544T	ACTGACAGAATTG	.	120	99	158	1	.	24	G	128449530	A	G	128449530	2	3	182	1	0	0	0	0	0	0	0	1	2770	175	7	2		2	CCDC136	7	128449530	Silent	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	125799802	128449530	30689133	48	22894											
ESYT2	57488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158540904	158540904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ESYT2	NM_020728	exon15	c.G1706A	p.R569H	TCCTGGCGCTTGG	.	62	50	103	0	.	92	T	158540904	C	T	158540904	3	4	182	1	0	0	0	0	1	0	0	0	5265	768	27	1	1007	1	ESYT2	7	158540904	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	30091374	158540904	597759	49	22895											
HR	55806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21986325	21986325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HR	NM_018411	exon2	c.G359C	p.G120A	AGGGGGCCACAGC	.	52	41	60	0	.	154	G	21986325	C	G	21986325	3	3	182	1	0	0	0	0	1	0	0	0	7347	739	26	4	3282	4	HR	8	21986325	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		21986325	124377697	50	22896											
PNMA2	10687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	26365742	26365742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PNMA2	NM_007257	exon3	c.A530T	p.E177V	TCTTCCTCTGGGG	.	43	36	69	0	.	90	A	26365742	T	A	26365742	3	1	182	1	0	0	0	0	1	0	0	0	12154	1551	54	4	568	4	PNMA2	8	26365742	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	4379417	26365742	119998280	51	22897											
RGS22	26166	bcgsc.ca;mdanderson.org	37	8	100999806	100999806	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RGS22	NM_015668	exon21	c.T3060C	p.I1020I	AAAAGCAATGATT	.	24	22	29	1	.	140	G	100999806	A	G	100999806	2	3	182	1	0	0	0	0	0	0	0	1	13305	126	5	2		2	RGS22	8	100999806	Silent	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	74634064	100999806	45364216	52	22898											
ABRA	137735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	107782252	107782252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ABRA	NM_139166	exon1	c.C167A	p.T56N	TCCTGGGTCCCTC	.	124	102	202	2	.	92	T	107782252	G	T	107782252	3	4	182	1	0	0	0	0	1	0	0	0	100	1261	44	3	986	3	ABRA	8	107782252	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	6782446	107782252	38581770	53	22899											
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113569137	113569137	+	Silent	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.A4089C	p.G1363G	CTTGTATCCAAAT	.	20	10	66	0	.	1132	G	113569137	T	G	113569137	2	3	182	1	0	0	0	0	0	0	0	1	3946	1422	50	5		5	CSMD3	8	113569137	Silent	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	5786885	113569137	32794885	54	22900	146	2									
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113569140	113569140	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.4086delT	p.F1362fs	GTATCCAAATTGT	.	20	11	65	0	.	1132	-	113569140	A	-	113569140	7	5	182	1	0	1	0	1	0	0	0	0	3946	127	5	0	7225	0	CSMD3	8	113569140	Frame_Shift_Del	DEL	A	TCGA-QA-A7B7-01A-11D-A32G-10	3	113569140	32794882	55	22901	146	2									
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135176017	135176017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SETX	NM_015046	exon12	c.A5548G	p.M1850V	ACTTACTGACTGA	.	176	66	159	0	.	93	C	135176017	T	C	135176017	3	2	182	1	0	0	0	0	1	0	0	0	14141	1594	55	2	2545	2	SETX	9	135176017	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10		135176017	6037414	56	22902											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137715262	137715262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	COL5A1	NM_000093	exon61	c.G4645A	p.G1549S	CCCCAGGGTCCAA	.	140	50	114	0	.	524	A	137715262	G	A	137715262	3	1	182	1	0	0	0	0	1	0	0	0	3696	1246	43	3	4887	3	COL5A1	9	137715262	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	2539245	137715262	3498169	57	22903											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140865851	140865851	+	Silent	SNP	C	C	T	rs201843778		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CACNA1B	NM_001243812	exon11	c.C1350T	p.R450R	CGCCCGCGCCAGC	.	87	37	66	0	.	138	T	140865851	C	T	140865851	2	4	182	1	0	0	0	0	0	0	0	1	2539	755	27	1		1	CACNA1B	9	140865851	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	3150589	140865851	347580	58	22904											
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	35333758	35333758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CUL2	NM_001198778	exon7	c.A602G	p.H201R	ACCCCATGGATTA	.	199	134	109	0	.	229	C	35333758	T	C	35333758	3	2	182	1	0	0	0	0	1	0	0	0	4055	1464	51	2	1752	2	CUL2	10	35333758	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10		35333758	100200989	59	22905											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720726	89720726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon8	c.877delG	p.G293fs	GAAAATGGAAGTC	.	95	72	132	0	.	17735	-	89720726	G	-	89720726	7	5	182	1	0	1	0	1	0	0	0	0	12738	1349	47	0	907	0	PTEN	10	89720726	Frame_Shift_Del	DEL	G	TCGA-QA-A7B7-01A-11D-A32G-10	54386968	89720726	45814021	60	22906											
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93742473	93742473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	BTAF1	NM_003972	exon18	c.G2178T	p.R726S	ACAGAGGATTAGT	.	67	48	85	0	.	92	T	93742473	G	T	93742473	3	4	182	1	0	0	0	0	1	0	0	0	1536	1165	41	3	2248	3	BTAF1	10	93742473	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	4021747	93742473	41792274	61	22907											
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118314762	118314762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PNLIP	NM_000936	exon7	c.T644C	p.F215S	CCAAATTTGTGGA	.	69	48	120	0	.	92	C	118314762	T	C	118314762	3	2	182	1	0	0	0	0	1	0	0	0	12149	1841	64	2	666	2	PNLIP	10	118314762	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	24572289	118314762	17219985	62	22908											
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6565467	6565467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNHD1	NM_144666	exon19	c.C3745A	p.H1249N	ATCATGCATGGCC	.	62	23	64	0	.	24	A	6565467	C	A	6565467	3	1	182	1	0	0	0	0	1	0	0	0	4668	710	25	3	3820	3	DNHD1	11	6565467	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		6565467	128441049	63	22909											
INTS5	80789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62415200	62415200	+	Silent	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	INTS5	NM_030628	exon2	c.T2352A	p.V784V	GCAGTGAACCAGG	.	135	59	91	0	.	92	T	62415200	A	T	62415200	2	4	182	1	0	0	0	0	0	0	0	1	7781	233	9	4		4	INTS5	11	62415200	Silent	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	55849733	62415200	72591316	64	22910											
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66243202	66243202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PELI3	NM_145065	exon8	c.C974A	p.A325E	AGGAGGCAAATGC	.	104	41	65	0	.	91	A	66243202	C	A	66243202	3	1	182	1	0	0	0	0	1	0	0	0	11723	710	25	3	1000	3	PELI3	11	66243202	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	3828002	66243202	68763314	65	22911											
CLCF1	23529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67135026	67135026	+	Missense_Mutation	SNP	G	G	T	rs76168219	byfrequency;alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CLCF1	NM_013246	exon2	c.C88A	p.R30S	CTGTGCGATTGAG	.	78	30	79	0	G|0.997;A|0.003	90	T	67135026	G	T	67135026	3	4	182	1	0	0	0	0	1	0	0	0	3461	1058	37	1	597	1	CLCF1	11	67135026	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	891824	67135026	67871490	66	22912											
GPR152	390212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67219232	67219232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GPR152	NM_206997	exon1	c.C964G	p.P322A	TGCCCGGCCGCTC	.	61	25	55	0	.	90	C	67219232	G	C	67219232	3	2	182	1	0	0	0	0	1	0	0	0	6658	1203	42	4	452	4	GPR152	11	67219232	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	84206	67219232	67787284	67	22913											
IGHMBP2	3508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68701272	68701272	+	Silent	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IGHMBP2	NM_002180	exon10	c.A1428T	p.P476P	CCTCCCAGGTGTG	.	63	36	72	0	.	90	T	68701272	A	T	68701272	2	4	182	1	0	0	0	0	0	0	0	1	7591	175	7	4		4	IGHMBP2	11	68701272	Silent	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	1482040	68701272	66305244	68	22914											
PGR	5241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100998998	100998998	+	Silent	SNP	G	G	C	rs186653307	by1000genomes	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PGR	NM_000926	exon1	c.C804G	p.V268V	CTTGGGGACCAGG	.	15	6	25	0	G|0.999;C|0.000	652	C	100998998	G	C	100998998	2	2	182	1	0	0	0	0	0	0	0	1	11805	1161	41	4		4	PGR	11	100998998	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	32297726	100998998	34007518	69	22915											
EI24	9538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125451109	125451109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EI24	.	.	.	.	TTAGGAATTGAAA	.	106	51	96	0	.	91	T	125451109	A	T	125451109	3	4	182	1	0	0	0	0	1	0	0	0	4985	101	4	4	706	4	EI24	11	125451109	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	24452111	125451109	9555407	70	22916											
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1902886	1902886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CACNA2D4	NM_172364	exon38	c.G3349C	p.A1117P	GCGAGGCTGAGGT	.	138	55	104	0	.	23	G	1902886	C	G	1902886	3	3	182	1	0	0	0	0	1	0	0	0	2551	797	28	4	68	4	CACNA2D4	12	1902886	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		1902886	131949009	71	22917											
C1RL	51279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7249108	7249108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	C1RL	NM_016546	exon6	c.A1343G	p.H448R	CAGTGATGGGCAT	.	91	31	85	0	.	91	C	7249108	T	C	7249108	3	2	182	1	0	0	0	0	1	0	0	0	1973	1464	51	2	124	2	C1RL	12	7249108	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	5346222	7249108	126602787	72	22918											
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759531	8759531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AICDA	NM_020661	exon2	c.T86G	p.L29R	TAGCACAGGTAGG	.	77	29	47	0	.	229	C	8759531	A	C	8759531	3	2	182	1	0	0	0	0	1	0	0	0	422	188	7	5	526	5	AICDA	12	8759531	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	1510423	8759531	125092364	73	22919											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43828114	43828114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS20	NM_025003	exon19	c.A2654C	p.K885T	CATTCTTTATCAG	.	147	71	147	0	.	795	G	43828114	T	G	43828114	3	3	182	1	0	0	0	0	1	0	0	0	266	1841	64	5	3161	5	ADAMTS20	12	43828114	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10	35068583	43828114	90023781	74	22920											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43828156	43828156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS20	NM_025003	exon19	c.T2612C	p.I871T	CAAGTTATGTTTC	.	120	53	121	0	.	795	G	43828156	A	G	43828156	3	3	182	1	0	0	0	0	1	0	0	0	266	449	16	2	3203	2	ADAMTS20	12	43828156	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	42	43828156	90023739	75	22921											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	66838427	66838427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIP1	NM_001178074	exon12	c.C1468T	p.Q490X	GGAGCTGACTGGC	.	171	58	187	0	.	494	A	66838427	G	A	66838427	4	1	182	1	0	0	0	0	0	1	0	0	6787	1299	45	3	1814	3	GRIP1	12	66838427	Nonsense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	23010271	66838427	67013468	76	22922											
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111336787	111336787	+	Silent	SNP	C	C	T	rs141258896		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC63	NM_152591	exon10	c.C1200T	p.Y400Y	CAAGTACGGGGAG	.	76	39	65	0	C|1.000;T|0.000	134	T	111336787	C	T	111336787	2	4	182	1	0	0	0	0	0	0	0	1	2834	547	19	1		1	CCDC63	12	111336787	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	44498360	111336787	22515108	77	22923											
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96579585	96579585	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	UGGT2	NM_020121	exon18	c.A1983G	p.T661T	ATTTAATGTGCCC	.	198	88	136	0	.	92	C	96579585	T	C	96579585	2	2	182	1	0	0	0	0	0	0	0	1	16939	1451	51	2		2	UGGT2	13	96579585	Silent	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10		96579585	18590293	78	22924											
RABGGTA	5875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24734864	24734864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_004581	exon16	c.A1661T	p.Q554L	GCCAGTTGCTCCA	.	46	20	45	0	.	.	A	24734864	T	A	24734864	3	1	182	1	0	0	0	0	1	0	0	0	12967	1812	63	4	46	4	RABGGTA	14	24734864	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10		24734864	82614676	79	22925											
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69520835	69520835	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DCAF5	NM_003861	exon9	c.G2568A	p.V856V	GGCCACCACCTCC	.	93	28	73	0	.	91	T	69520835	C	T	69520835	2	4	182	1	0	0	0	0	0	0	0	1	4273	581	21	3		3	DCAF5	14	69520835	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	44785971	69520835	37828705	80	22926											
CHGA	1113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93397788	93397788	+	Silent	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CHGA	NM_001275	exon6	c.C549G	p.T183T	CAACACCCACCCT	.	14	12	34	0	.	516	G	93397788	C	G	93397788	2	3	182	1	0	0	0	0	0	0	0	1	3338	610	22	4		4	CHGA	14	93397788	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	23876953	93397788	13951752	81	22927											
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59500993	59500993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MYO1E	NM_004998	exon14	c.G1417T	p.V473L	CACCCACCGCATG	.	95	37	76	0	.	514	A	59500993	C	A	59500993	3	1	182	1	0	0	0	0	1	0	0	0	10072	507	18	3	1969	3	MYO1E	15	59500993	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		59500993	43030399	82	22928											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63978599	63978599	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HERC1	NM_003922	exon34	c.T6184C	p.L2062L	ATGCCAATCCATA	.	124	67	137	0	.	666	G	63978599	A	G	63978599	2	3	182	1	0	0	0	0	0	0	0	1	7057	98	4	2		2	HERC1	15	63978599	Silent	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	4477606	63978599	38552793	83	22929											
SNX33	257364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75942327	75942327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SNX33	NM_153271	exon1	c.C884T	p.T295I	AGGCCACTGGCCG	.	81	31	68	0	.	91	T	75942327	C	T	75942327	3	4	182	1	0	0	0	0	1	0	0	0	14903	565	20	3	886	3	SNX33	15	75942327	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	11963728	75942327	26589065	84	22930											
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	312457	312457	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ITFG3	NM_032039	exon8	c.C876T	p.L292L	GGGTCTCTACGAG	.	72	24	34	0	.	90	T	312457	C	T	312457	2	4	182	1	0	0	0	0	0	0	0	1	7871	900	32	3		3	ITFG3	16	312457	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		312457	90042296	85	22931											
ZG16B	124220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2880717	2880717	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZG16B	NM_145252	exon3	c.C183T	p.G61G	AGGAGGCAAGTAT	.	119	22	87	0	.	91	T	2880717	C	T	2880717	2	4	182	1	0	0	0	0	0	0	0	1	17669	697	25	3		3	ZG16B	16	2880717	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	2568260	2880717	87474036	86	22932											
MTSS1L	92154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70698047	70698047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MTSS1L	NM_138383	exon15	c.G1777A	p.V593M	TCTTCACAGGGAC	.	27	19	36	0	.	68	T	70698047	C	T	70698047	3	4	182	1	0	0	0	0	1	0	0	0	9963	478	17	3	470	3	MTSS1L	16	70698047	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	67817330	70698047	19656706	87	22933											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	51	39	74	0	C|1.000;|0.000	70225	A	7577534	C	A	7577534	3	1	182	1	0	0	0	0	1	0	0	0	16378	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		7577534	73617676	88	22934											
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47784394	47784394	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SLC35B1	NM_005827	exon2	c.G141A	p.E47E	GAACGTCTCCTGC	.	68	31	51	0	.	90	T	47784394	C	T	47784394	2	4	182	1	0	0	0	0	0	0	0	1	14575	912	32	3		3	SLC35B1	17	47784394	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	40206860	47784394	33410816	89	22935											
KLHL14	57565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30257147	30257147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KLHL14	NM_020805	exon8	c.A1735G	p.S579G	TCCAGCTGTAGCC	.	142	61	103	0	.	91	C	30257147	T	C	30257147	3	2	182	1	0	0	0	0	1	0	0	0	8370	1580	55	2	159	2	KLHL14	18	30257147	Missense_Mutation	SNP	T	TCGA-QA-A7B7-01A-11D-A32G-10		30257147	47820101	90	22936											
KCNG2	26251	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	77623988	77623988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KCNG2	NM_012283	exon1	c.C321A	p.Y107X	GGCCTACTGGGGC	.	16	14	13	0	.	90	A	77623988	C	A	77623988	4	1	182	1	0	0	0	0	0	1	0	0	8028	576	20	3	323	3	KCNG2	18	77623988	Nonsense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	47366841	77623988	453260	91	22937											
DPP9	91039	hgsc.bcm.edu;bcgsc.ca	37	19	4695540	4695540	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DPP9	NM_139159	exon12	c.C1203A	p.P401P	CTGCTGGGGCCGG	.	76	5	42	0	.	91	T	4695540	G	T	4695540	2	4	182	1	0	0	0	0	0	0	0	1	4733	1219	43	3		3	DPP9	19	4695540	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10		4695540	54433443	92	22938											
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6714044	6714046	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	GTA	GTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	C3	NM_000064	exon7	c.730_732del	p.244_244del	ATAGATGTAGTAG	.	42	16	33	0	.	95	-	6714046	GTA	-	6714044	7	5	182	1	0	1	0	1	0	0	0	0	2204	1372	48	0	4399	0	C3	19	6714044	In_Frame_Del	DEL	GTA	TCGA-QA-A7B7-01A-11D-A32G-10	2018504	6714044	52414939	93	22939											
CCDC130	81576	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	13873870	13873870	+	Silent	SNP	G	G	A	rs35254119	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC130	NM_030818	exon10	c.G1179A	p.S393S	CGACTCGGAGAGT	.	24	10	18	0	G|0.983;A|0.017	90	A	13873870	G	A	13873870	2	1	182	1	0	0	0	0	0	0	0	1	2766	1103	39	1		1	CCDC130	19	13873870	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	7159826	13873870	45255113	94	22940											
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21476555	21476555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF708	NM_021269	exon4	c.T1213G	p.S405A	GAGTTGAGGACTT	.	62	18	68	0	.	516	C	21476555	A	C	21476555	3	2	182	1	0	0	0	0	1	0	0	0	18109	304	11	5	482	5	ZNF708	19	21476555	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	7602685	21476555	37652428	95	22941											
LRP3	4037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	33696163	33696163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LRP3	NM_002333	exon5	c.C487T	p.Q163X	CTGGGCCAGGCAT	.	38	20	27	0	.	92	T	33696163	C	T	33696163	4	4	182	1	0	0	0	0	0	1	0	0	8958	595	21	3	505	3	LRP3	19	33696163	Nonsense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	12219608	33696163	25432820	96	22942											
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34839933	34839933	+	Silent	SNP	C	C	T	rs150651317		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIAA0355	NM_014686	exon12	c.C2700T	p.H900H	CCTGCACGGTGGC	.	75	35	61	0	C|1.000;T|0.000	91	T	34839933	C	T	34839933	2	4	182	1	0	0	0	0	0	0	0	1	8170	535	19	1		1	KIAA0355	19	34839933	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	1143770	34839933	24289050	97	22943											
FCGBP	8857	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40396028	40396028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FCGBP	NM_003890	exon15	c.G7369A	p.G2457R	GATCTCCCGACGC	.	194	24	156	0	.	98	T	40396028	C	T	40396028	3	4	182	1	0	0	0	0	1	0	0	0	5778	632	22	3	8936	3	FCGBP	19	40396028	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10	5556095	40396028	18732955	98	22944											
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51021678	51021678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LRRC4B	NM_001080457	exon3	c.C1292T	p.T431M	TGGCCCGTGTCCT	.	49	20	47	0	.	205	A	51021678	G	A	51021678	3	1	182	1	0	0	0	0	1	0	0	0	9007	1145	40	1	853	1	LRRC4B	19	51021678	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	10625650	51021678	8107305	99	22945											
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51169904	51169904	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SHANK1	NM_016148	exon22	c.C5313A	p.G1771G	GCTGGGGCCAGGC	.	27	12	41	0	.	153	T	51169904	G	T	51169904	2	4	182	1	0	0	0	0	0	0	0	1	14264	1190	42	3		3	SHANK1	19	51169904	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	148226	51169904	7959079	100	22946											
VN1R4	317703	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53770065	53770065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	VN1R4	NM_173857	exon1	c.T854C	p.L285P	CTCATGAGAACAA	.	97	39	87	1	.	92	G	53770065	A	G	53770065	3	3	182	1	0	0	0	0	1	0	0	0	17177	304	11	2	54	2	VN1R4	19	53770065	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10	2600161	53770065	5358918	101	22947											
SIRPB1	10326	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	1552656	1552656	+	Missense_Mutation	SNP	C	C	T	rs139432093	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SIRPB1	NM_006065	exon3	c.G461A	p.G154D	GCAGGGCCCGATA	.	138	55	127	1	C|0.997;A|0.003	91	T	1552656	C	T	1552656	3	4	182	1	0	0	0	0	1	0	0	0	14333	739	26	3	747	3	SIRPB1	20	1552656	Missense_Mutation	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		1552656	61472864	102	22948											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	8113326	8113326	+	Missense_Mutation	SNP	G	G	T	rs150241349		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PLCB1	NM_015192	exon1	c.G28T	p.A10S	GTGCACGCCTTGC	.	111	55	131	0	G|1.000;T|0.000	297	T	8113326	G	T	8113326	3	4	182	1	0	0	0	0	1	0	0	0	12027	1087	38	1	30	1	PLCB1	20	8113326	Missense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	6560670	8113326	54912194	103	22949											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44117597	44117597	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PDE9A	NM_001001570	exon4	c.C291T	p.H97H	GTCCCACCAGGTG	.	249	68	199	0	.	92	T	44117597	C	T	44117597	2	4	182	1	0	0	0	0	0	0	0	1	11655	506	18	3		3	PDE9A	21	44117597	Silent	SNP	C	TCGA-QA-A7B7-01A-11D-A32G-10		44117597	4012298	104	22950											
ERCC6L	54821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71426314	71426314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ERCC6L	NM_017669	exon2	c.T2303C	p.I768T	GAACTGATATCTT	.	109	95	94	1	.	93	G	71426314	A	G	71426314	3	3	182	1	0	0	0	0	1	0	0	0	5218	333	12	2	1453	2	ERCC6L	23	71426314	Missense_Mutation	SNP	A	TCGA-QA-A7B7-01A-11D-A32G-10		71426314	83844246	105	22951											
GRIA3	2892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122538600	122538600	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIA3	NM_000828	exon10	c.G1335T	p.L445L	GCAACTGGAAGGA	.	117	96	115	1	.	134	T	122538600	G	T	122538600	2	4	182	1	0	0	0	0	0	0	0	1	6769	1335	47	3		3	GRIA3	23	122538600	Silent	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	51112286	122538600	32731960	106	22952	147	2									
GRIA3	2892	broad.mit.edu;ucsc.edu	37	X	122538601	122538601	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIA3	NM_000828	exon10	c.G1336T	p.E446X	CAACTGGAAGGAA	.	118	98	113	1	.	134	T	122538601	G	T	122538601	4	4	182	1	0	0	0	0	0	1	0	0	6769	1175	41	3	1374	3	GRIA3	23	122538601	Nonsense_Mutation	SNP	G	TCGA-QA-A7B7-01A-11D-A32G-10	1	122538601	32731959	107	22953	147	2									
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7887481	7887481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PER3	NM_016831	exon17	c.G2468A	p.G823D	CGGAAGGCCTGCA	.	100	38	101	0	.	93	A	7887481	G	A	7887481	3	1	183	1	0	0	0	0	1	0	0	0	11731	1203	42	3	2534	3	PER3	1	7887481	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		7887481	241363140	1	22954											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21276594	21276594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	EIF4G3	NM_001198803	exon13	c.G590A	p.S197N	ACCTGGCTGGGCA	.	57	14	27	0	.	91	T	21276594	C	T	21276594	3	4	183	1	0	0	0	0	1	0	0	0	5038	797	28	3	4300	3	EIF4G3	1	21276594	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	13389113	21276594	227974027	2	22955											
KCNQ4	9132	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	41285059	41285059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KCNQ4	NM_004700	exon5	c.T749A	p.I250N	TGCTCATCTTCGC	.	64	17	43	1	.	90	A	41285059	T	A	41285059	3	1	183	1	0	0	0	0	1	0	0	0	8085	1435	50	4	767	4	KCNQ4	1	41285059	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	20008465	41285059	207965562	3	22956											
MPL	4352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43805039	43805039	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	MPL	NM_005373	exon4	c.T489C	p.D163D	CAGTGATTTCCTG	.	145	41	105	0	.	9885	C	43805039	T	C	43805039	2	2	183	1	0	0	0	0	0	0	0	1	9730	1490	52	2		2	MPL	1	43805039	Silent	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	2519980	43805039	205445582	4	22957											
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52269532	52269532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NRD1	NM_002525	exon22	c.A2471G	p.E824G	CCATGTTCTCCAG	.	81	28	100	0	.	90	C	52269532	T	C	52269532	3	2	183	1	0	0	0	0	1	0	0	0	10645	1783	62	2	1236	2	NRD1	1	52269532	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	8464493	52269532	196981089	5	22958											
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52732378	52732378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZFYVE9	NM_004799	exon6	c.A2330C	p.N777T	ACCCTAACAATCC	.	62	9	45	0	.	230	C	52732378	A	C	52732378	3	2	183	1	0	0	0	0	1	0	0	0	17668	43	2	5	2355	5	ZFYVE9	1	52732378	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	462846	52732378	196518243	6	22959											
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156917232	156917232	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARHGEF11	NM_198236	exon26	c.G2352A	p.V784V	TTCAGTCACAAAC	.	47	22	36	0	.	233	T	156917232	C	T	156917232	2	4	183	1	0	0	0	0	0	0	0	1	896	813	29	3		3	ARHGEF11	1	156917232	Silent	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	104184854	156917232	92333389	7	22960											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158913594	158913594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PYHIN1	NM_152501	exon6	c.G1017T	p.R339S	AAATAGGAAGACG	.	183	29	177	0	.	94	T	158913594	G	T	158913594	3	4	183	1	0	0	0	0	1	0	0	0	12865	1165	41	3	1035	3	PYHIN1	1	158913594	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	1996362	158913594	90337027	8	22961											
COPA	1314	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160282950	160282950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	COPA	NM_001098398	exon10	c.G850A	p.V284I	TCTGAACCCCAGT	.	39	5	42	0	.	92	T	160282950	C	T	160282950	3	4	183	1	0	0	0	0	1	0	0	0	3727	507	18	3	2947	3	COPA	1	160282950	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	1369356	160282950	88967671	9	22962											
RHOU	58480	broad.mit.edu;mdanderson.org	37	1	228871746	228871746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RHOU	NM_021205	exon1	c.T257A	p.F86Y	ACAACTTCTCCGG	.	20	7	16	0	.	659	A	228871746	T	A	228871746	3	1	183	1	0	0	0	0	1	0	0	0	13345	1783	62	4	259	4	RHOU	1	228871746	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	68588796	228871746	20378875	10	22963											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237693789	237693789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RYR2	NM_001035	exon25	c.A2885G	p.K962R	AGGTGAAAAAAAT	.	68	15	59	0	.	158	G	237693789	A	G	237693789	3	3	183	1	0	0	0	0	1	0	0	0	13769	14	1	2	2983	2	RYR2	1	237693789	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	8822043	237693789	11556832	11	22964											
ASXL2	55252	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25965211	25965211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ASXL2	NM_018263	exon12	c.A3995G	p.N1332S	GAGACATTGATCA	.	58	6	68	1	.	23	C	25965211	T	C	25965211	3	2	183	1	0	0	0	0	1	0	0	0	1067	1493	52	2	316	2	ASXL2	2	25965211	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10		25965211	217234162	12	22965											
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98340508	98340508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZAP70	NM_001079	exon3	c.C9A	p.D3E	GCCAGACCCCGCG	.	20	14	23	0	.	955	A	98340508	C	A	98340508	3	1	183	1	0	0	0	0	1	0	0	0	17511	506	18	3	11	3	ZAP70	2	98340508	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	72375297	98340508	144858865	13	22966											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216261911	216261911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FN1	NM_212476	exon23	c.A3553G	p.N1185D	CAGGGTTTGCCTC	.	49	8	61	0	.	584	C	216261911	T	C	216261911	3	2	183	1	0	0	0	0	1	0	0	0	5962	1841	64	2	3976	2	FN1	2	216261911	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	117921403	216261911	26937462	14	22967											
STK25	10494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242439594	242439594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	STK25	NM_006374	exon5	c.A421G	p.I141V	CTTTGATGTCTCG	.	64	20	85	0	.	978	C	242439594	T	C	242439594	3	2	183	1	0	0	0	0	1	0	0	0	15293	1464	51	2	891	2	STK25	2	242439594	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	26177683	242439594	759779	15	22968											
OXSM	54995	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25833159	25833159	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OXSM	NM_017897	exon2	c.G648T	p.V216V	TGCTGTGGGAGAC	.	154	35	143	1	.	132	T	25833159	G	T	25833159	2	4	183	1	0	0	0	0	0	0	0	1	11335	1335	47	3		3	OXSM	3	25833159	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		25833159	172189271	16	22969											
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49848783	49848783	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	UBA7	NM_003335	exon9	c.G1045C	p.V349L	GGGCGACTGTCCG	.	81	38	80	0	.	228	G	49848783	C	G	49848783	3	3	183	1	0	0	0	0	1	0	0	0	16830	565	20	4	2057	4	UBA7	3	49848783	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	24015624	49848783	148173647	17	22970											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121215700	121215700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	POLQ	NM_199420	exon14	c.C2233A	p.R745S	GCCCACGATTGCA	.	59	24	63	0	.	664	T	121215700	G	T	121215700	3	4	183	1	0	0	0	0	1	0	0	0	12208	1058	37	1	5607	1	POLQ	3	121215700	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	71366917	121215700	76806730	18	22971											
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136057110	136057110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	STAG1	NM_005862	exon34	c.A3763C	p.M1255L	TAGGCATTCCAAA	.	144	29	128	0	.	228	G	136057110	T	G	136057110	3	3	183	1	0	0	0	0	1	0	0	0	15241	1493	52	5	17	5	STAG1	3	136057110	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	14841410	136057110	61965320	19	22972											
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	159711492	159711492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IL12A	NM_000882	exon6	c.T467A	p.L156Q	AGGCCCTGTGCCT	.	125	5	118	0	.	90	A	159711492	T	A	159711492	3	1	183	1	0	0	0	0	1	0	0	0	7624	1580	55	4	489	4	IL12A	3	159711492	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	23654382	159711492	38310938	20	22973											
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169867033	169867033	+	Splice_Site	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PHC3	NM_024947	exon6	c.415-1G>C	.	GTTGATCTAAGGA	.	25	9	39	0	.	227	G	169867033	C	G	169867033	5	3	183	1	0	0	0	0	0	0	1	0	11818	927	32	4	2617	4	PHC3	3	169867033	Splice_Site	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	10155541	169867033	28155397	21	22974											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185997721	185997721	+	Silent	SNP	G	G	A	rs61752079	byfrequency	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DGKG	NM_001346	exon9	c.C711T	p.D237D	AAAGCCGTCCCGG	.	75	21	92	0	G|0.999;A|0.001	714	A	185997721	G	A	185997721	2	1	183	1	0	0	0	0	0	0	0	1	4469	1136	40	1		1	DGKG	3	185997721	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	16130688	185997721	12024709	22	22975											
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194080170	194080170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	LRRC15	NM_001135057	exon3	c.G1621A	p.A541T	TCTGGGCCTGGGT	.	76	32	81	0	.	71	T	194080170	C	T	194080170	3	4	183	1	0	0	0	0	1	0	0	0	8970	739	26	3	146	3	LRRC15	3	194080170	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	8082449	194080170	3942260	23	22976											
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77660340	77660340	+	Silent	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SHROOM3	NM_020859	exon5	c.A1014C	p.S338S	AGCCTCAGCAAAT	.	43	10	67	0	.	93	C	77660340	A	C	77660340	2	2	183	1	0	0	0	0	0	0	0	1	14295	175	7	5		5	SHROOM3	4	77660340	Silent	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10		77660340	113493936	24	22977											
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83970469	83970469	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	COPS4	NM_016129	exon3	c.A305T	p.Q102L	AGGAGCAGGTAAA	.	49	12	59	0	.	226	T	83970469	A	T	83970469	3	4	183	1	0	0	0	0	1	0	0	0	3735	202	7	4	315	4	COPS4	4	83970469	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	6310129	83970469	107183807	25	22978											
PPP3CA	5530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102117189	102117189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PPP3CA	NM_000944	exon2	c.C143T	p.A48V	AGATGCGCCTTTA	.	96	25	101	0	.	227	A	102117189	G	A	102117189	3	1	183	1	0	0	0	0	1	0	0	0	12397	1087	38	1	1474	1	PPP3CA	4	102117189	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	18146720	102117189	89037087	26	22979											
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119154228	119154228	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NDST3	NM_004784	exon9	c.C1881G	p.S627R	CCCCAGCCCAAAA	.	80	27	119	0	.	153	G	119154228	C	G	119154228	3	3	183	1	0	0	0	0	1	0	0	0	10257	738	26	4	1911	4	NDST3	4	119154228	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	17037039	119154228	72000048	27	22980											
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148984418	148984418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARHGAP10	NM_024605	exon21	c.C2147T	p.P716L	TTTCTCCTCCTGC	.	65	16	77	0	.	229	T	148984418	C	T	148984418	3	4	183	1	0	0	0	0	1	0	0	0	862	681	24	3	2229	3	ARHGAP10	4	148984418	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	29830190	148984418	42169858	28	22981											
PDGFC	56034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	157892010	157892019	+	Frame_Shift_Del	DEL	GGCCGGCCAG	GGCCGGCCAG	-	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	GGCCGGCCAG	GGCCGGCCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PDGFC	NM_016205	exon1	c.37_46del	p.13_16del	GTCTCTGGCCGGC	.	44	11	71	0	.	525	-	157892019	GGCCGGCCAG	-	157892010	7	5	183	1	0	1	0	1	0	0	0	0	11659	1357	47	0	1015	0	PDGFC	4	157892010	Frame_Shift_Del	DEL	GGCCGGCCAG	TCGA-RC-A6M3-01A-11D-A32G-10	8907592	157892010	33262266	29	22982											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5200316	5200316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ADAMTS16	NM_139056	exon9	c.T1385C	p.L462S	CTACATTGGCAGG	.	92	24	71	0	.	275	C	5200316	T	C	5200316	3	2	183	1	0	0	0	0	1	0	0	0	261	1821	63	2	1419	2	ADAMTS16	5	5200316	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10		5200316	175714944	30	22983											
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115782757	115782757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SEMA6A	NM_020796	exon19	c.C2645T	p.P882L	CGCTGTGGAACTT	.	110	36	129	0	.	92	A	115782757	G	A	115782757	3	1	183	1	0	0	0	0	1	0	0	0	14039	1348	47	3	451	3	SEMA6A	5	115782757	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	110582441	115782757	65132503	31	22984											
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178391941	178391941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF454	NM_001178089	exon5	c.A536G	p.E179G	CCTTTGAGTGTAG	.	87	10	78	0	.	93	G	178391941	A	G	178391941	3	3	183	1	0	0	0	0	1	0	0	0	17920	304	11	2	550	2	ZNF454	5	178391941	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	62609184	178391941	2523319	32	22985											
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63990999	63990999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	LGSN	NM_016571	exon4	c.T457G	p.L153V	TTGATAACTCTGG	.	135	19	124	0	.	227	C	63990999	A	C	63990999	3	2	183	1	0	0	0	0	1	0	0	0	8759	40	2	5	1076	5	LGSN	6	63990999	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10		63990999	107124068	33	22986											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75861697	75861697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	COL12A1	NM_004370	exon20	c.A3886G	p.M1296V	GTCTCATGCCAGC	.	112	37	116	0	.	142	C	75861697	T	C	75861697	3	2	183	1	0	0	0	0	1	0	0	0	3669	1464	51	2	5493	2	COL12A1	6	75861697	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	11870698	75861697	95253370	34	22987											
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84270639	84270639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SNAP91	NM_001242792	exon26	c.G2470C	p.V824L	GAGGAACTGAACT	.	124	40	120	0	.	23	G	84270639	C	G	84270639	3	3	183	1	0	0	0	0	1	0	0	0	14833	565	20	4	265	4	SNAP91	6	84270639	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	8408942	84270639	86844428	35	22988											
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	107956286	107956286	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SOBP	NM_018013	exon6	c.G2238A	p.P746P	GCCGCCGCCGCCG	.	38	12	39	0	.	91	A	107956286	G	A	107956286	2	1	183	1	0	0	0	0	0	0	0	1	14912	1074	38	1		1	SOBP	6	107956286	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	23685647	107956286	63158781	36	22989											
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119338099	119338099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FAM184A	NM_024581	exon5	c.A1343G	p.E448G	TTTGCTTCATTTA	.	292	103	310	0	.	519	C	119338099	T	C	119338099	3	2	183	1	0	0	0	0	1	0	0	0	5511	1783	62	2	2135	2	FAM184A	6	119338099	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	11381813	119338099	51776968	37	22990											
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154414480	154414480	+	Missense_Mutation	SNP	G	G	C	rs200463796	alternate_allele	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OPRM1	NM_001008505	exon4	c.G1240C	p.G414R	CTGCAAGGACCTC	.	84	31	109	0	.	69	C	154414480	G	C	154414480	3	2	183	1	0	0	0	0	1	0	0	0	10887	1001	35	4	1603	4	OPRM1	6	154414480	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	35076381	154414480	16700587	38	22991											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5754691	5754691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RNF216	NM_207111	exon11	c.C1826G	p.S609C	TTTCCAGATCCAA	.	62	20	54	0	.	274	C	5754691	G	C	5754691	3	2	183	1	0	0	0	0	1	0	0	0	13480	942	33	4	973	4	RNF216	7	5754691	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		5754691	153383972	39	22992											
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	49977181	49977181	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZPBP	NM_007009	exon8	c.A999T	p.G333G	ATGAATTCCATCA	.	69	14	64	0	.	90	A	49977181	T	A	49977181	2	1	183	1	0	0	0	0	0	0	0	1	18216	1770	62	4		4	ZPBP	7	49977181	Silent	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	44222490	49977181	109161482	40	22993											
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76908085	76908085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CCDC146	NM_020879	exon12	c.T1457C	p.I486T	CCAACATTGTTAA	.	149	55	119	0	.	70	C	76908085	T	C	76908085	3	2	183	1	0	0	0	0	1	0	0	0	2780	1493	52	2	1499	2	CCDC146	7	76908085	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	26930904	76908085	82230578	41	22994											
SH2B2	10603	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101944556	101944556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	TCGTGCCGCCCAA	.	51	15	76	0	.	.	T	101944556	C	T	101944556	3	4	183	1	0	0	0	0	1	0	0	0	14228	652	23	1	857	1	SH2B2	7	101944556	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	25036471	101944556	57194107	42	22995											
USP17L2	377630	bcgsc.ca;mdanderson.org	37	8	11996022	11996022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	USP17L2	NM_201402	exon1	c.A248G	p.Q83R	ATATTCTGGAGCC	.	103	25	108	0	.	435	C	11996022	T	C	11996022	3	2	183	1	0	0	0	0	1	0	0	0	17045	1580	55	2	1348	2	USP17L2	8	11996022	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10		11996022	134368000	43	22996											
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	14181674	14181674	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SGCZ	NM_139167	exon3	c.C274T	p.R92X	CAAGTCGGATTCC	.	48	9	61	0	.	93	A	14181674	G	A	14181674	4	1	183	1	0	0	0	0	0	1	0	0	14204	1124	39	1	688	1	SGCZ	8	14181674	Nonsense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	2185652	14181674	132182348	44	22997											
IDO2	169355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	39836668	39836668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IDO2	NM_194294	exon4	c.G317C	p.G106A	CCATGGGTTATGT	.	29	5	42	0	.	24	C	39836668	G	C	39836668	3	2	183	1	0	0	0	0	1	0	0	0	7502	1261	44	4	331	4	IDO2	8	39836668	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	25654994	39836668	106527354	45	22998											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55539235	55539235	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RP1	NM_006269	exon4	c.T2793C	p.P931P	AAAGCCTATAAAA	.	109	15	107	0	.	102	C	55539235	T	C	55539235	2	2	183	1	0	0	0	0	0	0	0	1	13532	1509	53	2		2	RP1	8	55539235	Silent	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	15702567	55539235	90824787	46	22999											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72958753	72958753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TRPA1	NM_007332	exon17	c.C2056A	p.L686I	CGTTGAGGGCTGT	.	121	14	63	0	.	230	T	72958753	G	T	72958753	3	4	183	1	0	0	0	0	1	0	0	0	16574	1000	35	3	1347	3	TRPA1	8	72958753	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	17419518	72958753	73405269	47	23000											
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74355007	74355007	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TMEM2	NM_001135820	exon5	c.T1176C	p.S392S	TGTCACAGAGAAC	.	53	9	51	0	.	92	G	74355007	A	G	74355007	2	3	183	1	0	0	0	0	0	0	0	1	16118	175	7	2		2	TMEM2	9	74355007	Silent	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10		74355007	66858424	48	23001											
ASTN2	23245	ucsc.edu;bcgsc.ca	37	9	119188314	119188314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ASTN2	NM_014010	exon22	c.G3683T	p.S1228I	AGGAGGCTGGAGC	.	24	4	40	0	.	161	A	119188314	C	A	119188314	3	1	183	1	0	0	0	0	1	0	0	0	1065	797	28	3	228	3	ASTN2	9	119188314	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	44833307	119188314	22025117	49	23002											
SARDH	1757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136597702	136597702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SARDH	NM_007101	exon3	c.C353T	p.P118L	TCACTGGGCCGCA	.	46	23	34	0	.	90	A	136597702	G	A	136597702	3	1	183	1	0	0	0	0	1	0	0	0	13841	1232	43	3	2479	3	SARDH	9	136597702	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	17409388	136597702	4615729	50	23003											
CHUK	1147	broad.mit.edu;bcgsc.ca	37	10	101989281	101989281	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHUK	NM_001278	exon1	c.G9T	p.R3R	CGGGGGCCGCTCC	.	17	5	25	0	.	961	A	101989281	C	A	101989281	2	1	183	1	0	0	0	0	0	0	0	1	3416	726	26	3		3	CHUK	10	101989281	Silent	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10		101989281	33545466	51	23004											
GSTO1	9446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106025865	106025865	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	GSTO1	NM_004832	exon5	c.C489T	p.T163T	GACGACCTTCTTT	.	99	28	131	0	.	90	T	106025865	C	T	106025865	2	4	183	1	0	0	0	0	0	0	0	1	6842	668	24	3		3	GSTO1	10	106025865	Silent	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	4036584	106025865	29508882	52	23005											
RASGRP2	10235	broad.mit.edu;mdanderson.org	37	11	64496461	64496461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RASGRP2	NM_001098671	exon15	c.C1645T	p.R549W	TGCGCCGACACTC	.	14	5	19	0	.	227	A	64496461	G	A	64496461	3	1	183	1	0	0	0	0	1	0	0	0	13075	1057	37	1	192	1	RASGRP2	11	64496461	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		64496461	70510055	53	23006											
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	72406835	72406836	+	Frame_Shift_Ins	INS	-	-	TGGGA	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARAP1	NM_001040118	exon24	c.3348_3349insTCCCA	p.Q1116fs	ATCTGTCTGGAAG	.	43	21	62	0	.	91	TGGGA	72406836	-	TGGGA	72406835	7	5	183	1	0	1	1	0	0	0	0	0	838	912	32	0	1052	0	ARAP1	11	72406835	Frame_Shift_Ins	INS	-	TCGA-RC-A6M3-01A-11D-A32G-10	7910374	72406835	62599681	54	23007											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73020542	73020542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARHGEF17	NM_014786	exon1	c.C859T	p.H287Y	GGCGGCCACCGCT	.	26	15	31	0	.	227	T	73020542	C	T	73020542	3	4	183	1	0	0	0	0	1	0	0	0	900	594	21	3	861	3	ARHGEF17	11	73020542	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	613707	73020542	61985974	55	23008											
DDX47	51202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	12980267	12980267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DDX47	NM_016355	exon11	c.G1194A	p.M398I	TATGATGCTGACA	.	74	16	103	1	.	226	A	12980267	G	A	12980267	3	1	183	1	0	0	0	0	1	0	0	0	4365	1319	46	3	1236	3	DDX47	12	12980267	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		12980267	120871628	56	23009											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52754698	52754698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KRT85	NM_002283	exon9	c.C1463T	p.P488L	TGGCAGGGGGCAC	.	42	18	40	0	.	91	A	52754698	G	A	52754698	3	1	183	1	0	0	0	0	1	0	0	0	8499	1232	43	3	64	3	KRT85	12	52754698	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	39774431	52754698	81097197	57	23010											
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55524501	55524501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OR9K2	NM_001005243	exon1	c.A949G	p.N317D	CTGAGGAACAAAG	.	135	54	131	0	.	69	G	55524501	A	G	55524501	3	3	183	1	0	0	0	0	1	0	0	0	11254	246	9	2	951	2	OR9K2	12	55524501	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	2769803	55524501	78327394	58	23011											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66856725	66856725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	GRIP1	NM_001178074	exon9	c.G1021C	p.A341P	TTAGGGCCAGCCG	.	105	40	97	0	.	494	G	66856725	C	G	66856725	3	3	183	1	0	0	0	0	1	0	0	0	6787	739	26	4	2273	4	GRIP1	12	66856725	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	11332224	66856725	66995170	59	23012											
ACADS	35	ucsc.edu;bcgsc.ca	37	12	121164932	121164932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ACADS	NM_000017	exon2	c.G150T	p.E50D	TGCCGAGAAGGAG	.	33	4	58	0	.	90	T	121164932	G	T	121164932	3	4	183	1	0	0	0	0	1	0	0	0	114	933	33	3	156	3	ACADS	12	121164932	Missense_Mutation	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	54308207	121164932	12686963	60	23013											
RFC3	5983	broad.mit.edu;bcgsc.ca	37	13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	AAAAAATTGAAAT	.	164	7	234	1	.	227	A	34398073	T	A	34398073	3	1	183	1	0	0	0	0	1	0	0	0	13246	1493	52	4	255	4	RFC3	13	34398073	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10		34398073	80771805	61	23014											
SOX21	11166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	95363707	95363707	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SOX21	NM_007084	exon1	c.C597T	p.T199T	GCCCGCGGTCGGG	.	18	9	26	0	.	514	A	95363707	G	A	95363707	2	1	183	1	0	0	0	0	0	0	0	1	14950	1103	39	1		1	SOX21	13	95363707	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	60965634	95363707	19806171	62	23015											
RNASE1	6035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21269973	21269973	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RNASE1	NM_198235	exon3	c.C255T	p.V85V	GAAACAGACATTC	.	135	65	130	0	.	90	A	21269973	G	A	21269973	2	1	183	1	0	0	0	0	0	0	0	1	13399	929	33	3		3	RNASE1	14	21269973	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		21269973	86079567	63	23016											
C15orf60	283677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73766189	73766189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	C15orf60	NM_001042367	exon2	c.A176C	p.E59A	CCAATGAAGAATC	.	86	16	68	0	.	46	C	73766189	A	C	73766189	3	2	183	1	0	0	0	0	1	0	0	0	1808	246	9	5	182	5	C15orf60	15	73766189	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10		73766189	28765203	64	23017											
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1630796	1630796	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IFT140	NM_014714	exon13	c.G1488A	p.T496T	CTCCACCGTGTAA	.	63	26	83	0	.	95	T	1630796	C	T	1630796	2	4	183	1	0	0	0	0	0	0	0	1	7556	639	23	1		1	IFT140	16	1630796	Silent	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10		1630796	88723957	65	23018											
TRIM72	493829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31235616	31235616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TRIM72	NM_001008274	exon7	c.C974T	p.P325L	AGGACCCGCGCCA	.	39	18	44	0	.	44	T	31235616	C	T	31235616	3	4	183	1	0	0	0	0	1	0	0	0	16542	652	23	1	996	1	TRIM72	16	31235616	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	29604820	31235616	59119137	66	23019											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419205	31419205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ITGAD	NM_005353	exon9	c.A977G	p.K326R	TCCAGAAGCAGCT	.	67	12	55	0	.	226	G	31419205	A	G	31419205	3	3	183	1	0	0	0	0	1	0	0	0	7884	72	3	2	1011	2	ITGAD	16	31419205	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	183589	31419205	58935548	67	23020											
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84163813	84163813	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	HSDL1	NM_031463	exon4	c.G444A	p.L148L	ATTTACCAAGATG	.	93	20	97	0	.	90	T	84163813	C	T	84163813	2	4	183	1	0	0	0	0	0	0	0	1	7393	593	21	3		3	HSDL1	16	84163813	Silent	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	52744608	84163813	6190940	68	23021											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11784551	11784551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DNAH9	NM_001372	exon55	c.T10627C	p.C3543R	AAAGAATGTGAAT	.	69	42	82	0	.	168	C	11784551	T	C	11784551	3	2	183	1	0	0	0	0	1	0	0	0	4608	1464	51	2	10845	2	DNAH9	17	11784551	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10		11784551	69410659	69	23022											
ZNF624	57547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16527675	16527675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF624	NM_020787	exon6	c.A525G	p.I175M	TCTCAATATCCTA	.	90	54	160	0	.	154	C	16527675	T	C	16527675	3	2	183	1	0	0	0	0	1	0	0	0	18045	1396	49	2	2076	2	ZNF624	17	16527675	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	4743124	16527675	64667535	70	23023											
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560352	59560352	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TBX4	NM_018488	exon8	c.T1113A	p.P371P	CCCCCCTCCCTAC	.	25	6	43	0	.	227	A	59560352	T	A	59560352	2	1	183	1	0	0	0	0	0	0	0	1	15657	1538	54	4		4	TBX4	17	59560352	Silent	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	43032677	59560352	21634858	71	23024											
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78972941	78972941	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHMP6	NM_024591	exon8	c.G594A	p.V198V	GCTGGTGGCAGCT	.	37	13	50	0	.	91	A	78972941	G	A	78972941	2	1	183	1	0	0	0	0	0	0	0	1	3360	1335	47	3		3	CHMP6	17	78972941	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	19412589	78972941	2222269	72	23025											
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70423359	70423359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NETO1	NM_001201465	exon8	c.T892G	p.F298V	GGCAGAAGAATGT	.	158	26	152	0	.	94	C	70423359	A	C	70423359	3	2	183	1	0	0	0	0	1	0	0	0	10339	72	3	5	721	5	NETO1	18	70423359	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10		70423359	7653889	73	23026											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8161856	8161856	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FBN3	NM_032447	exon42	c.C5322T	p.C1774C	CTGCTGGCAGGGA	.	30	11	37	0	.	100	A	8161856	G	A	8161856	2	1	183	1	0	0	0	0	0	0	0	1	5704	1195	42	3		3	FBN3	19	8161856	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10		8161856	50967127	74	23027											
OR7D2	162998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9297230	9297230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OR7D2	NM_175883	exon1	c.T773C	p.V258A	TTGGGGTCCACTT	.	60	21	69	0	.	71	C	9297230	T	C	9297230	3	2	183	1	0	0	0	0	1	0	0	0	11219	1667	58	2	775	2	OR7D2	19	9297230	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10	1135374	9297230	49831753	75	23028											
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14150478	14150478	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IL27RA	NM_004843	exon3	c.376+1G>A	.	CCCAAAGTAACGT	.	65	22	53	0	.	90	A	14150478	G	A	14150478	5	1	183	1	0	0	0	0	0	0	1	0	7681	1043	36	3	387	3	IL27RA	19	14150478	Splice_Site	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	4853248	14150478	44978505	76	23029											
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720356	21720356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF429	NM_001001415	exon4	c.A1501G	p.K501E	CATAAAAAAATTC	.	29	10	33	0	.	516	G	21720356	A	G	21720356	3	3	183	1	0	0	0	0	1	0	0	0	17899	15	1	2	1515	2	ZNF429	19	21720356	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	7569878	21720356	37408627	77	23030											
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50306439	50306439	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	AP2A1	NM_014203	exon18	c.G2313A	p.Q771Q	CCGACAGAACCTG	.	35	14	34	0	.	92	A	50306439	G	A	50306439	2	1	183	1	0	0	0	0	0	0	0	1	739	933	33	3		3	AP2A1	19	50306439	Silent	SNP	G	TCGA-RC-A6M3-01A-11D-A32G-10	28586083	50306439	8822544	78	23031											
ZFP28	140612	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57058902	57058902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZFP28	NM_020828	exon3	c.C326G	p.A109G	ATGTGGCTGTAGA	.	130	44	123	1	.	91	G	57058902	C	G	57058902	3	3	183	1	0	0	0	0	1	0	0	0	17639	797	28	4	336	4	ZFP28	19	57058902	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	6752463	57058902	2070081	79	23032											
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57088623	57088623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF470	NM_001001668	exon6	c.A826G	p.R276G	CATCAGAGAATAC	.	132	26	93	0	.	92	G	57088623	A	G	57088623	3	3	183	1	0	0	0	0	1	0	0	0	17926	296	11	2	840	2	ZNF470	19	57088623	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	29721	57088623	2040360	80	23033											
ZNF17	7565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57931549	57931549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF17	NM_006959	exon3	c.A689G	p.N230S	GGTACAACTCCGA	.	84	34	59	0	.	90	G	57931549	A	G	57931549	3	3	183	1	0	0	0	0	1	0	0	0	17740	43	2	2	699	2	ZNF17	19	57931549	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10	842926	57931549	1197434	81	23034											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40085989	40085989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHD6	NM_032221	exon18	c.G2744A	p.R915H	ATCTCGCGCTCGT	.	67	34	70	0	.	238	T	40085989	C	T	40085989	3	4	183	1	0	0	0	0	1	0	0	0	3329	768	27	1	5483	1	CHD6	20	40085989	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10		40085989	22939531	82	23035											
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40562816	40562816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	MED14	NM_004229	exon11	c.A1291G	p.I431V	TCTCTATGGAAGC	.	153	88	214	0	.	289	C	40562816	T	C	40562816	3	2	183	1	0	0	0	0	1	0	0	0	9432	1464	51	2	3157	2	MED14	23	40562816	Missense_Mutation	SNP	T	TCGA-RC-A6M3-01A-11D-A32G-10		40562816	114707744	83	23036											
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117053617	117053617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KLHL13	NM_001168299	exon5	c.G446A	p.R149K	ATTTTCCTTAGAC	.	113	66	168	0	.	556	T	117053617	C	T	117053617	3	4	183	1	0	0	0	0	1	0	0	0	8369	681	24	3	1546	3	KLHL13	23	117053617	Missense_Mutation	SNP	C	TCGA-RC-A6M3-01A-11D-A32G-10	76490801	117053617	38216943	84	23037											
PCDH11Y	83259	broad.mit.edu;bcgsc.ca	37	Y	4967709	4967709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_032972	exon2	c.A2090T	p.D697V	TGGTTGATGTCAA	.	286	169	288	2	.	.	T	4967709	A	T	4967709	3	4	183	1	0	0	0	0	1	0	0	0	11509	333	12	4	2132	4	PCDH11Y	24	4967709	Missense_Mutation	SNP	A	TCGA-RC-A6M3-01A-11D-A32G-10		4967709	54405857	85	23038											
FBXO44	93611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	11718615	11718615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FBXO44	NM_033182	exon4	c.G418A	p.D140N	GTGGTGGACCTCA	.	39	18	47	0	.	227	A	11718615	G	A	11718615	3	1	184	1	0	0	0	0	1	0	0	0	5753	1174	41	3	428	3	FBXO44	1	11718615	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		11718615	237532006	1	23039											
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17280833	17280833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CROCC	NM_014675	exon22	c.G3302T	p.S1101I	CCCAGAGCCGGCA	.	71	31	58	0	.	137	T	17280833	G	T	17280833	3	4	184	1	0	0	0	0	1	0	0	0	3893	971	34	3	3388	3	CROCC	1	17280833	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	5562218	17280833	231969788	2	23040											
NR0B2	8431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27240140	27240140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NR0B2	NM_021969	exon1	c.C292A	p.L98I	ACCCAAGCAGGAA	.	59	38	55	1	.	186	T	27240140	G	T	27240140	3	4	184	1	0	0	0	0	1	0	0	0	10614	971	34	3	489	3	NR0B2	1	27240140	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	9959307	27240140	222010481	3	23041											
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235646	33235646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA1522	NM_020888	exon6	c.A866T	p.E289V	AGACAGAGGCCAT	.	64	24	50	0	.	90	T	33235646	A	T	33235646	3	4	184	1	0	0	0	0	1	0	0	0	8238	304	11	4	888	4	KIAA1522	1	33235646	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	5995506	33235646	216014975	4	23042											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39929343	39929343	+	Silent	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MACF1	NM_012090	exon91	c.A15561C	p.G5187G	GATCGGAGAGAAT	.	134	65	92	0	.	165	C	39929343	A	C	39929343	2	2	184	1	0	0	0	0	0	0	0	1	9144	291	11	5		5	MACF1	1	39929343	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	6693697	39929343	209321278	5	23043											
ATPAF1	64756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47110923	47110923	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ATPAF1	NM_022745	exon7	c.A663G	p.L221L	AGCACATAGAAAC	.	42	27	34	0	.	90	C	47110923	T	C	47110923	2	2	184	1	0	0	0	0	0	0	0	1	1200	1393	49	2		2	ATPAF1	1	47110923	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	7181580	47110923	202139698	6	23044											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62516654	62516654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	INADL	NM_176877	exon31	c.A4049T	p.E1350V	GCACCGAACCTAT	.	42	20	48	0	.	94	T	62516654	A	T	62516654	3	4	184	1	0	0	0	0	1	0	0	0	7731	246	9	4	4167	4	INADL	1	62516654	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	15405731	62516654	186733967	7	23045											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94510167	94510167	+	Splice_Site	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABCA4	NM_000350	exon21	c.3050+2T>G	.	TCGCTTACTGGTG	.	86	31	79	0	.	162	C	94510167	A	C	94510167	5	2	184	1	0	0	0	0	0	0	1	0	34	405	14	5	3893	5	ABCA4	1	94510167	Splice_Site	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	31993513	94510167	154740454	8	23046											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118623785	118623785	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SPAG17	NM_206996	exon15	c.T2148C	p.D716D	TCTATTATCAGGG	.	150	66	152	0	.	158	G	118623785	A	G	118623785	2	3	184	1	0	0	0	0	0	0	0	1	14979	446	16	2		2	SPAG17	1	118623785	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	24113618	118623785	130626836	9	23047											
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145532113	145532113	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ITGA10	NM_003637	exon8	c.759-2A>T	.	CTTCTCAGCACAG	.	24	11	26	0	.	231	T	145532113	A	T	145532113	5	4	184	1	0	0	0	0	0	0	1	0	7873	202	7	4	787	4	ITGA10	1	145532113	Splice_Site	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	26908328	145532113	103718508	10	23048											
VPS72	6944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151156881	151156881	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VPS72	NM_001271087	exon4	c.A474T	p.R158R	CCCCTTTCGCCGT	.	77	36	55	0	.	154	A	151156881	T	A	151156881	2	1	184	1	0	0	0	0	0	0	0	1	17214	1770	62	4		4	VPS72	1	151156881	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	5624768	151156881	98093740	11	23049											
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154961247	154961247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FLAD1	NM_025207	exon2	c.C1039A	p.P347T	CGTTTGCCCCAGG	.	71	25	41	0	.	93	A	154961247	C	A	154961247	3	1	184	1	0	0	0	0	1	0	0	0	5920	739	26	3	1120	3	FLAD1	1	154961247	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	3804366	154961247	94289374	12	23050											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158589013	158589013	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SPTA1	NM_003126	exon45	c.A6529C	p.R2177R	CACACCTGGTTTC	.	107	39	108	0	.	142	G	158589013	T	G	158589013	2	3	184	1	0	0	0	0	0	0	0	1	15115	1594	55	5		5	SPTA1	1	158589013	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	3627766	158589013	90661608	13	23051											
SLAMF7	57823	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160720138	160720138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLAMF7	NM_021181	exon4	c.C694A	p.L232M	TGTCTCCTGTTGG	.	183	72	208	1	.	93	A	160720138	C	A	160720138	3	1	184	1	0	0	0	0	1	0	0	0	14369	680	24	3	708	3	SLAMF7	1	160720138	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	2131125	160720138	88530483	14	23052											
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175046732	175046732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TNN	NM_022093	exon2	c.G178A	p.A60T	GTTGACGCTGACC	.	96	49	77	0	.	138	A	175046732	G	A	175046732	3	1	184	1	0	0	0	0	1	0	0	0	16320	1087	38	1	180	1	TNN	1	175046732	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	14326594	175046732	74203889	15	23053											
FAM163A	148753	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	179783084	179783084	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FAM163A	NM_173509	exon5	c.T264C	p.C88C	GCCCTGTGGGGTG	.	57	20	62	1	.	91	C	179783084	T	C	179783084	2	2	184	1	0	0	0	0	0	0	0	1	5476	1702	59	2		2	FAM163A	1	179783084	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	4736352	179783084	69467537	16	23054											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	180904469	180904469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA1614	NM_020950	exon5	c.T1424A	p.V475E	GCCAGGTGCTGAG	.	47	22	31	0	.	26	A	180904469	T	A	180904469	3	1	184	1	0	0	0	0	1	0	0	0	8248	1696	59	4	1442	4	KIAA1614	1	180904469	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	1121385	180904469	68346152	17	23055											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186056637	186056637	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HMCN1	NM_031935	exon60	c.A9223T	p.T3075S	GAGGGAACTTCTG	.	113	44	85	0	.	113	T	186056637	A	T	186056637	3	4	184	1	0	0	0	0	1	0	0	0	7220	43	2	4	9461	4	HMCN1	1	186056637	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	5152168	186056637	63193984	18	23056											
C1orf27	54953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186348970	186348970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	C1orf27	NM_001164245	exon2	c.T53A	p.I18K	CAAACATAAATCT	.	203	82	120	0	.	23	A	186348970	T	A	186348970	3	1	184	1	0	0	0	0	1	0	0	0	2036	1406	49	4	55	4	C1orf27	1	186348970	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	292333	186348970	62901651	19	23057											
FAIM3	9214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207087190	207087190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FAIM3	NM_005449	exon2	c.A287G	p.E96G	TCACTTTCTGTCA	.	190	52	133	0	.	90	C	207087190	T	C	207087190	3	2	184	1	0	0	0	0	1	0	0	0	5377	1783	62	2	913	2	FAIM3	1	207087190	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	20738220	207087190	42163431	20	23058											
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211093249	211093249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNH1	NM_172362	exon7	c.A1195T	p.S399C	CAATGCTGTACCA	.	227	70	138	0	.	94	A	211093249	T	A	211093249	3	1	184	1	0	0	0	0	1	0	0	0	8031	1580	55	4	1794	4	KCNH1	1	211093249	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	4006059	211093249	38157372	21	23059											
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227216680	227216680	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CDC42BPA	NM_003607	exon29	c.C4005A	p.T1335T	GTGACGGGTCTTG	.	56	14	26	0	.	549	T	227216680	G	T	227216680	2	4	184	1	0	0	0	0	0	0	0	1	3072	1219	43	3		3	CDC42BPA	1	227216680	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	16123431	227216680	22033941	22	23060											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228528927	228528927	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OBSCN	NM_001271223	exon84	c.C20700A	p.V6900V	TACCGTCAGCTAC	.	72	17	38	0	.	403	A	228528927	C	A	228528927	2	1	184	1	0	0	0	0	0	0	0	1	10812	813	29	3		3	OBSCN	1	228528927	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	1312247	228528927	20721694	23	23061											
CHML	1122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241799048	241799048	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CHML	NM_001821	exon1	c.A21C	p.T7T	AAACTCTGTGGGA	.	197	51	130	0	.	96	G	241799048	T	G	241799048	2	3	184	1	0	0	0	0	0	0	0	1	3351	1567	55	5		5	CHML	1	241799048	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	13270121	241799048	7451573	24	23062											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1843065	1843065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MYT1L	NM_015025	exon21	c.C2930G	p.P977R	GCCAAGGGGCACC	.	52	31	63	0	.	95	C	1843065	G	C	1843065	3	2	184	1	0	0	0	0	1	0	0	0	10107	1232	43	4	644	4	MYT1L	2	1843065	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		1843065	241356308	25	23063											
DDX1	1653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15736869	15736869	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DDX1	NM_004939	exon4	c.A144T	p.T48T	AGAAACAGGAAGT	.	528	236	474	1	.	253	T	15736869	A	T	15736869	2	4	184	1	0	0	0	0	0	0	0	1	4341	175	7	4		4	DDX1	2	15736869	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	13893804	15736869	227462504	26	23064											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21236253	21236253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	APOB	NM_000384	exon25	c.C3995G	p.S1332C	TCTCGAGATGGCA	.	56	20	59	0	.	175	C	21236253	G	C	21236253	3	2	184	1	0	0	0	0	1	0	0	0	785	942	33	4	9716	4	APOB	2	21236253	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	5499384	21236253	221963120	27	23065											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21255274	21255274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	APOB	NM_000384	exon10	c.A1304G	p.D435G	CGCTGATCCCTCG	.	18	6	42	0	.	175	C	21255274	T	C	21255274	3	2	184	1	0	0	0	0	1	0	0	0	785	1435	50	2	12467	2	APOB	2	21255274	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	19021	21255274	221944099	28	23066											
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24881562	24881562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NCOA1	NM_147223	exon3	c.G16T	p.D6Y	CTCGGGGACAGTT	.	75	34	87	0	.	228	T	24881562	G	T	24881562	3	4	184	1	0	0	0	0	1	0	0	0	10228	1174	41	3	18	3	NCOA1	2	24881562	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	3626288	24881562	218317811	29	23067											
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28824137	28824137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PLB1	NM_153021	exon37	c.G2545A	p.D849N	CATGAAGACTGGA	.	78	37	79	0	.	141	A	28824137	G	A	28824137	3	1	184	1	0	0	0	0	1	0	0	0	12024	942	33	3	2724	3	PLB1	2	28824137	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	3942575	28824137	214375236	30	23068											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32706429	32706429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	BIRC6	NM_016252	exon38	c.G7450C	p.D2484H	GAAATTGACCTTG	.	215	110	210	0	.	233	C	32706429	G	C	32706429	3	2	184	1	0	0	0	0	1	0	0	0	1438	1290	45	4	7600	4	BIRC6	2	32706429	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	3882292	32706429	210492944	31	23069											
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54482488	54482488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TSPYL6	NM_001003937	exon1	c.A801T	p.R267S	TTGGCCTCTAATC	.	95	49	74	0	.	90	A	54482488	T	A	54482488	3	1	184	1	0	0	0	0	1	0	0	0	16660	1548	54	4	435	4	TSPYL6	2	54482488	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	21776059	54482488	188716885	32	23070											
MXD1	4084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70165400	70165400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MXD1	NM_002357	exon6	c.C650T	p.A217V	ACAAGGCGTGTCT	.	79	33	71	0	.	226	T	70165400	C	T	70165400	3	4	184	1	0	0	0	0	1	0	0	0	9999	768	27	1	672	1	MXD1	2	70165400	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	15682912	70165400	173033973	33	23071											
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105858703	105858703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GPR45	NM_007227	exon1	c.G388A	p.V130M	ATCAGCGTGGACC	.	117	64	114	0	.	154	A	105858703	G	A	105858703	3	1	184	1	0	0	0	0	1	0	0	0	6696	1145	40	1	390	1	GPR45	2	105858703	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	35693303	105858703	137340670	34	23072											
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128870806	128870806	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UGGT1	NM_020120	exon6	c.A670T	p.N224Y	AAAATCAATTATG	.	247	93	275	0	.	91	T	128870806	A	T	128870806	3	4	184	1	0	0	0	0	1	0	0	0	16938	130	5	4	692	4	UGGT1	2	128870806	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	23012103	128870806	114328567	35	23073											
TMEM163	81615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135260482	135260482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TMEM163	NM_030923	exon5	c.T545C	p.L182P	TCTGGGAGCAGCC	.	94	39	96	0	.	90	G	135260482	A	G	135260482	3	3	184	1	0	0	0	0	1	0	0	0	16075	304	11	2	340	2	TMEM163	2	135260482	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	6389676	135260482	107938891	36	23074											
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	157186238	157186238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NR4A2	NM_006186	exon3	c.A461T	p.Q154L	TAGTTCTGGTGGA	.	88	39	75	0	.	189	A	157186238	T	A	157186238	3	1	184	1	0	0	0	0	1	0	0	0	10633	1580	55	4	1359	4	NR4A2	2	157186238	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	21925756	157186238	86013135	37	23075											
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180851443	180851443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CWC22	NM_020943	exon4	c.A185G	p.Y62C	CTATCATAAGAAC	.	60	23	46	0	.	90	C	180851443	T	C	180851443	3	2	184	1	0	0	0	0	1	0	0	0	4068	1406	49	2	2609	2	CWC22	2	180851443	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	23665205	180851443	62347930	38	23076											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	186670102	186670102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FSIP2	NM_173651	exon17	c.G16336T	p.E5446X	GTATATGAACAGT	.	168	85	217	0	.	90	T	186670102	G	T	186670102	4	4	184	1	0	0	0	0	0	1	0	0	6075	1291	45	3	16402	3	FSIP2	2	186670102	Nonsense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	5818659	186670102	56529271	39	23077											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225652011	225652011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DOCK10	NM_014689	exon49	c.A5522T	p.E1841V	TGTTTCTCAAAGA	.	61	24	73	0	.	92	A	225652011	T	A	225652011	3	1	184	1	0	0	0	0	1	0	0	0	4685	1551	54	4	1070	4	DOCK10	2	225652011	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	38981909	225652011	17547362	40	23078											
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242542471	242542471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_015963	exon4	c.C1424T	p.T475M	TTGCGCGTGTCCG	.	23	13	31	0	.	.	A	242542471	G	A	242542471	3	1	184	1	0	0	0	0	1	0	0	0	15843	1145	40	1	321	1	THAP4	2	242542471	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	16890460	242542471	656902	41	23079											
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13612450	13612450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FBLN2	NM_001998	exon2	c.T595G	p.Y199D	TACAGCTATGACC	.	62	23	41	0	.	91	G	13612450	T	G	13612450	3	3	184	1	0	0	0	0	1	0	0	0	5699	1522	53	5		5	FBLN2	3	13612450	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10		13612450	184409980	42	23080											
GLB1	2720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33110391	33110391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GLB1	NM_000404	exon3	c.A317T	p.Y106F	AGAAAATATTCCA	.	78	35	75	0	.	135	A	33110391	T	A	33110391	3	1	184	1	0	0	0	0	1	0	0	0	6427	1406	49	4	1772	4	GLB1	3	33110391	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	19497941	33110391	164912039	43	23081											
STAC	6769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36485045	36485045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	STAC	NM_003149	exon2	c.C301G	p.L101V	GCTGGTCTGCATC	.	41	23	36	0	.	94	G	36485045	C	G	36485045	3	3	184	1	0	0	0	0	1	0	0	0	15238	912	32	4	307	4	STAC	3	36485045	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	3374654	36485045	161537385	44	23082											
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37574811	37574811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ITGA9	NM_002207	exon14	c.G1380T	p.R460S	AGCAAGGCCTGTC	.	43	22	45	0	.	715	T	37574811	G	T	37574811	3	4	184	1	0	0	0	0	1	0	0	0	7883	1194	42	3	1434	3	ITGA9	3	37574811	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	1089766	37574811	160447619	45	23083											
MYD88	4615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38181897	38181897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MYD88	NM_002468	exon3	c.T521A	p.F174Y	AGCGTTTCGATGC	.	84	38	58	0	.	901	A	38181897	T	A	38181897	3	1	184	1	0	0	0	0	1	0	0	0	10023	1783	62	4	531	4	MYD88	3	38181897	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	607086	38181897	159840533	46	23084											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	150	73	122	0	.	24361	T	41266098	A	T	41266098	3	4	184	1	0	0	0	0	1	0	0	0	4016	275	10	4	101	4	CTNNB1	3	41266098	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	3084201	41266098	156756332	47	23085											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52558211	52558211	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	STAB1	NM_015136	exon68	c.C7638T	p.T2546T	CGACACCTTTTGT	.	86	48	62	0	.	139	T	52558211	C	T	52558211	2	4	184	1	0	0	0	0	0	0	0	1	15236	668	24	3		3	STAB1	3	52558211	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	11292113	52558211	145464219	48	23086											
FRMD4B	23150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69221075	69221075	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FRMD4B	NM_015123	exon23	c.C3042T	p.N1014N	CTCCAGGTTGTCT	.	143	53	171	0	.	72	A	69221075	G	A	69221075	2	1	184	1	0	0	0	0	0	0	0	1	6052	1252	44	3		3	FRMD4B	3	69221075	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	16662864	69221075	128801355	49	23087											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78737868	78737868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ROBO1	NM_002941	exon9	c.C1100A	p.T367N	GTTACAGTCCGTC	.	51	16	57	0	.	67	T	78737868	G	T	78737868	3	4	184	1	0	0	0	0	1	0	0	0	13513	1029	36	3	3947	3	ROBO1	3	78737868	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	9516793	78737868	119284562	50	23088											
DZIP3	9666	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108405433	108405433	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DZIP3	NM_014648	exon28	c.3149+2T>A	.	ACCAGGTACCTTA	.	152	40	202	1	.	91	A	108405433	T	A	108405433	5	1	184	1	0	0	0	0	0	0	1	0	4865	1652	57	4	3257	4	DZIP3	3	108405433	Splice_Site	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	29667565	108405433	89616997	51	23089											
BTLA	151888	broad.mit.edu;ucsc.edu	37	3	112190146	112190146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	BTLA	NM_181780	exon3	c.C460A	p.L154I	ACAGGAGCCAGGG	.	38	4	65	0	.	90	T	112190146	G	T	112190146	3	4	184	1	0	0	0	0	1	0	0	0	1558	971	34	3	421	3	BTLA	3	112190146	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	3784713	112190146	85832284	52	23090											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121264699	121264699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	POLQ	NM_199420	exon1	c.A26T	p.K9I	CGCCGTTTCCCAC	.	40	15	37	0	.	664	A	121264699	T	A	121264699	3	1	184	1	0	0	0	0	1	0	0	0	12208	1841	64	4	7866	4	POLQ	3	121264699	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	9074553	121264699	76757731	53	23091											
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121712723	121712723	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ILDR1	NM_001199799	exon7	c.A873T	p.K291N	CAGTTCTTTCTCC	.	30	17	25	0	.	91	A	121712723	T	A	121712723	3	1	184	1	0	0	0	0	1	0	0	0	7709	1606	56	4	775	4	ILDR1	3	121712723	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	448024	121712723	76309707	54	23092											
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124826958	124826958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC12A8	NM_024628	exon10	c.A1072G	p.K358E	GTGTTTTGTTTGG	.	49	14	48	0	.	22	C	124826958	T	C	124826958	3	2	184	1	0	0	0	0	1	0	0	0	14389	1821	63	2	1092	2	SLC12A8	3	124826958	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	3114235	124826958	73195472	55	23093											
SLC41A3	54946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125769824	125769824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC41A3	NM_017836	exon3	c.A343T	p.N115Y	CCAGGTTCCCCTT	.	25	15	30	0	.	90	A	125769824	T	A	125769824	3	1	184	1	0	0	0	0	1	0	0	0	14631	1783	62	4	1318	4	SLC41A3	3	125769824	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	942866	125769824	72252606	56	23094											
H1FOO	132243	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129266304	129266304	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	H1FOO	NM_153833	exon2	c.C159A	p.P53P	CCACCCCCCGGTG	.	43	10	85	0	.	91	A	129266304	C	A	129266304	2	1	184	1	0	0	0	0	0	0	0	1	6922	610	22	3		3	H1FOO	3	129266304	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	3496480	129266304	68756126	57	23095											
CLDN18	51208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137748665	137748665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CLDN18	NM_016369	exon4	c.T530C	p.V177A	TGTTCGTGGGCTG	.	62	33	106	0	.	92	C	137748665	T	C	137748665	3	2	184	1	0	0	0	0	1	0	0	0	3479	1696	59	2	768	2	CLDN18	3	137748665	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	8482361	137748665	60273765	58	23096											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137787109	137787109	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DZIP1L	NM_173543	exon13	c.A1716C	p.P572P	ACGAGTTGGTGGG	.	78	17	86	0	.	92	G	137787109	T	G	137787109	2	3	184	1	0	0	0	0	0	0	0	1	4864	1799	63	5		5	DZIP1L	3	137787109	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	38444	137787109	60235321	59	23097											
HTR3D	200909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183756700	183756700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HTR3D	NM_001163646	exon8	c.C1302A	p.F434L	GCTCTTCCGCCTC	.	85	23	95	0	.	90	A	183756700	C	A	183756700	3	1	184	1	0	0	0	0	1	0	0	0	7447	854	30	3	1502	3	HTR3D	3	183756700	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	45969591	183756700	14265730	60	23098											
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	4228502	4228502	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OTOP1	NM_177998	exon1	c.T90A	p.P30P	CGAGGGAGGCGAG	.	15	11	8	0	.	92	T	4228502	A	T	4228502	2	4	184	1	0	0	0	0	0	0	0	1	11305	291	11	4		4	OTOP1	4	4228502	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		4228502	186925774	61	23099											
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48490859	48490859	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC10A4	NM_152679	exon3	c.A1217T	p.Y406F	TTTCTTATAAAAA	.	76	34	60	0	.	90	T	48490859	A	T	48490859	3	4	184	1	0	0	0	0	1	0	0	0	14376	449	16	4	1227	4	SLC10A4	4	48490859	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	44262357	48490859	142663417	62	23100											
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70346460	70346460	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UGT2B4	NM_021139	exon6	c.G1479C	p.V493V	CCCAGTCACATCC	.	107	55	117	0	.	92	G	70346460	C	G	70346460	2	3	184	1	0	0	0	0	0	0	0	1	16958	813	29	4		4	UGT2B4	4	70346460	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	21855601	70346460	120807816	63	23101											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71659507	71659507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RUFY3	NM_001037442	exon13	c.G1343A	p.R448H	GATTGCGCCAGGC	.	195	41	155	0	.	90	A	71659507	G	A	71659507	3	1	184	1	0	0	0	0	1	0	0	0	13740	1087	38	1	1836	1	RUFY3	4	71659507	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	1313047	71659507	119494769	64	23102											
KIAA1109	84162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268771	123268771	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA1109	NM_015312	exon74	c.G12966A	p.Q4322Q	GGAGCAGCCAAGT	.	105	40	131	1	.	80	A	123268771	G	A	123268771	2	1	184	1	0	0	0	0	0	0	0	1	8208	962	34	3		3	KIAA1109	4	123268771	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	51609264	123268771	67885505	65	23103											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155256019	155256019	+	Splice_Site	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DCHS2	NM_017639	exon9	c.1216+1G>C	.	TACTTACTCAAGG	.	26	9	47	0	.	94	G	155256019	C	G	155256019	5	3	184	1	0	0	0	0	0	0	1	0	4288	579	20	4	7701	4	DCHS2	4	155256019	Splice_Site	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	31987248	155256019	35898257	66	23104											
ENPP6	133121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185074757	185074757	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ENPP6	NM_153343	exon2	c.G371A	p.W124X	GTGACCCACAGAG	.	113	55	130	0	.	90	T	185074757	C	T	185074757	4	4	184	1	0	0	0	0	0	1	0	0	5134	595	21	3	979	3	ENPP6	4	185074757	Nonsense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	29818738	185074757	6079519	67	23105											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33649699	33649699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ADAMTS12	NM_030955	exon8	c.T1294C	p.W432R	TGGACCATGTCAG	.	46	14	30	0	.	232	G	33649699	A	G	33649699	3	3	184	1	0	0	0	0	1	0	0	0	257	217	8	2	3558	2	ADAMTS12	5	33649699	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		33649699	147265561	68	23106											
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41739504	41739504	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OXCT1	NM_000436	exon16	c.G1509C	p.G503G	ATCACACCCAGTA	.	128	52	123	0	.	133	G	41739504	C	G	41739504	2	3	184	1	0	0	0	0	0	0	0	1	11329	494	18	4		4	OXCT1	5	41739504	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	8089805	41739504	139175756	69	23107											
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55178923	55178923	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IL31RA	NM_001242637	exon5	c.A506T	p.K169I	GCATCAAACGAAT	.	114	54	122	0	.	91	T	55178923	A	T	55178923	3	4	184	1	0	0	0	0	1	0	0	0	7691	14	1	4	524	4	IL31RA	5	55178923	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	13439419	55178923	125736337	70	23108											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816442	82816442	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VCAN	NM_004385	exon7	c.A2317T	p.T773S	ACAGCAACTCCAG	.	53	27	45	0	.	238	T	82816442	A	T	82816442	3	4	184	1	0	0	0	0	1	0	0	0	17135	43	2	4	2339	4	VCAN	5	82816442	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	27637519	82816442	98098818	71	23109											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140209357	140209357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PCDHA6	NM_018909	exon1	c.A1681T	p.N561Y	AACGACAACGCGC	.	56	26	51	0	.	92	T	140209357	A	T	140209357	3	4	184	1	0	0	0	0	1	0	0	0	11528	130	5	4	1683	4	PCDHA6	5	140209357	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	57392915	140209357	40705903	72	23110											
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140531345	140531345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PCDHB6	NM_018939	exon1	c.T1507A	p.S503T	CTGGTCTCCATCA	.	42	14	36	0	.	91	A	140531345	T	A	140531345	3	1	184	1	0	0	0	0	1	0	0	0	11546	1551	54	4	1509	4	PCDHB6	5	140531345	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	321988	140531345	40383915	73	23111											
AFAP1L1	134265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148687115	148687115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AFAP1L1	NM_001146337	exon7	c.G686C	p.R229P	TGCTGCGGAAAAA	.	56	23	45	0	.	136	C	148687115	G	C	148687115	3	2	184	1	0	0	0	0	1	0	0	0	354	1116	39	4	712	4	AFAP1L1	5	148687115	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	8155770	148687115	32228145	74	23112											
PDE6A	5145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	149314265	149314265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PDE6A	NM_000440	exon2	c.A491G	p.D164G	ACAAAGTCACAGA	.	68	30	66	0	.	92	C	149314265	T	C	149314265	3	2	184	1	0	0	0	0	1	0	0	0	11645	1667	58	2	2175	2	PDE6A	5	149314265	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	627150	149314265	31600995	75	23113											
ANXA6	309	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	150516818	150516818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ANXA6	NM_001155	exon6	c.A383G	p.H128R	AGCTGGTGCATCT	.	74	28	66	1	.	22	C	150516818	T	C	150516818	3	2	184	1	0	0	0	0	1	0	0	0	722	1696	59	2	1722	2	ANXA6	5	150516818	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	1202553	150516818	30398442	76	23114											
SLC36A2	153201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150701730	150701730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC36A2	NM_181776	exon9	c.A1057T	p.T353S	CATAGGTGCACAG	.	63	26	49	0	.	91	A	150701730	T	A	150701730	3	1	184	1	0	0	0	0	1	0	0	0	14594	1696	59	4	402	4	SLC36A2	5	150701730	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	184912	150701730	30213530	77	23115											
HNRNPH1	3187	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179045165	179045165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HNRNPH1	NM_001257293	exon6	c.G696T	p.R232S	ACCACGCCTCATC	.	83	51	104	2	.	22	A	179045165	C	A	179045165	3	1	184	1	0	0	0	0	1	0	0	0	7266	738	26	3	685	3	HNRNPH1	5	179045165	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	28343435	179045165	1870095	78	23116											
ZNF391	346157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27368962	27368962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZNF391	NM_001076781	exon3	c.C813G	p.H271Q	AACACACACTGGG	.	118	38	86	0	.	69	G	27368962	C	G	27368962	3	3	184	1	0	0	0	0	1	0	0	0	17876	477	17	4	815	4	ZNF391	6	27368962	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10		27368962	143746105	79	23117											
TRIM31	11074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30080321	30080321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRIM31	NM_007028	exon2	c.T262C	p.S88P	TTTTGGACTGCAC	.	126	35	85	0	.	658	G	30080321	A	G	30080321	3	3	184	1	0	0	0	0	1	0	0	0	16502	275	10	2	1047	2	TRIM31	6	30080321	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2711359	30080321	141034746	80	23118											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32170085	32170085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NOTCH4	NM_004557	exon21	c.G3523T	p.A1175S	CCTTGGCTCCGGG	.	60	21	42	0	.	1321	A	32170085	C	A	32170085	3	1	184	1	0	0	0	0	1	0	0	0	10551	797	28	3	2528	3	NOTCH4	6	32170085	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	2089764	32170085	138944982	81	23119											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38802359	38802359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DNAH8	NM_001206927	exon32	c.G4307A	p.G1436E	AGGAAGGACCTAT	.	256	70	177	0	.	615	A	38802359	G	A	38802359	3	1	184	1	0	0	0	0	1	0	0	0	4607	1174	41	3	3766	3	DNAH8	6	38802359	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	6632274	38802359	132312708	82	23120											
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43402429	43402429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABCC10	NM_001198934	exon4	c.G1451T	p.R484L	GAGCCCGAGTAGA	.	103	29	53	0	.	96	T	43402429	G	T	43402429	3	4	184	1	0	0	0	0	1	0	0	0	50	1058	37	1	1328	1	ABCC10	6	43402429	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	4600070	43402429	127712638	83	23121											
TMEM63B	55362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	44116103	44116103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TMEM63B	NM_018426	exon13	c.A1102G	p.N368D	TTCCACAATGAGA	.	63	12	25	0	.	92	G	44116103	A	G	44116103	3	3	184	1	0	0	0	0	1	0	0	0	16188	130	5	2	1148	2	TMEM63B	6	44116103	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	713674	44116103	126998964	84	23122											
RUNX2	860	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	45296466	45296466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RUNX2	NM_001024630	exon2	c.G3T	p.M1I	GACTATGGCATCA	.	156	92	105	1	.	417	T	45296466	G	T	45296466	3	4	184	1	0	0	0	0	1	0	0	0	13748	1348	47	3	5	3	RUNX2	6	45296466	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	1180363	45296466	125818601	85	23123											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73102430	73102430	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RIMS1	NM_014989	exon31	c.T4536A	p.A1512A	GGGAGCTGACAGT	.	72	64	126	0	.	144	A	73102430	T	A	73102430	2	1	184	1	0	0	0	0	0	0	0	1	13367	1567	55	4		4	RIMS1	6	73102430	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	27805964	73102430	98012637	86	23124											
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	85446945	85446945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TBX18	NM_001080508	exon8	c.A1282T	p.N428Y	ATCGGTTGAGGGT	.	72	66	100	0	.	73	A	85446945	T	A	85446945	3	1	184	1	0	0	0	0	1	0	0	0	15650	1812	63	4	545	4	TBX18	6	85446945	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	12344515	85446945	85668122	87	23125											
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134158	128134158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	THEMIS	NM_001010923	exon4	c.T1628C	p.M543T	CTCCGCATCATGT	.	35	31	77	0	.	94	G	128134158	A	G	128134158	3	3	184	1	0	0	0	0	1	0	0	0	15857	217	8	2	430	2	THEMIS	6	128134158	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	42687213	128134158	42980909	88	23126											
VTA1	51534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142468439	142468439	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VTA1	NM_016485	exon1	c.A15G	p.A5A	GCTTGCACCGCTG	.	22	18	35	0	.	90	G	142468439	A	G	142468439	2	3	184	1	0	0	0	0	0	0	0	1	17230	146	6	2		2	VTA1	6	142468439	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	14334281	142468439	28646628	89	23127											
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	150005471	150005471	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	LATS1,NS,carcinoma,+1	LATS1	NM_001270519	exon4	c.A754T	p.R252X	GGCCTCTTGGAGG	.	52	46	88	0	.	992	A	150005471	T	A	150005471	4	1	184	1	0	0	0	0	0	1	0	0	8646	1617	56	4	2658	4	LATS1	6	150005471	Nonsense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	7537032	150005471	21109596	90	23128											
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155774563	155774563	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NOX3	NM_015718	exon4	c.C315T	p.V105V	ATAGGCGACCAGT	.	63	57	174	0	.	91	A	155774563	G	A	155774563	2	1	184	1	0	0	0	0	0	0	0	1	10557	1045	37	1		1	NOX3	6	155774563	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	5769092	155774563	15340504	91	23129											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2987241	2987241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CARD11	NM_032415	exon3	c.C188T	p.A63V	ATAGGGGCATTAA	.	121	61	118	0	.	870	A	2987241	G	A	2987241	3	1	184	1	0	0	0	0	1	0	0	0	2645	1203	42	3	3368	3	CARD11	7	2987241	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		2987241	156151422	92	23130											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17375399	17375399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AHR	NM_001621	exon9	c.G1149T	p.Q383H	AACTCAGAGACCA	.	76	26	71	0	.	227	T	17375399	G	T	17375399	3	4	184	1	0	0	0	0	1	0	0	0	416	933	33	3	1183	3	AHR	7	17375399	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	14388158	17375399	141763264	93	23131											
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22259519	22259519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RAPGEF5	NM_012294	exon9	c.A503T	p.Q168L	TCCGTCTGCAAAA	.	153	76	161	0	.	206	A	22259519	T	A	22259519	3	1	184	1	0	0	0	0	1	0	0	0	13047	1580	55	4	1761	4	RAPGEF5	7	22259519	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	4884120	22259519	136879144	94	23132											
VPS37D	155382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73085576	73085576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VPS37D	NM_001077621	exon4	c.C626T	p.A209V	CACCAGCAGTGCC	.	40	17	36	0	.	68	T	73085576	C	T	73085576	3	4	184	1	0	0	0	0	1	0	0	0	17205	710	25	3	640	3	VPS37D	7	73085576	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	50826057	73085576	86053087	95	23133											
CLIP2	7461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73752825	73752825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CLIP2	NM_032421	exon3	c.G169A	p.A57T	CCGGCCGCAGCTG	.	79	34	72	0	.	93	A	73752825	G	A	73752825	3	1	184	1	0	0	0	0	1	0	0	0	3533	1087	38	1	175	1	CLIP2	7	73752825	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	667249	73752825	85385838	96	23134											
PION	54103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76982269	76982269	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PION	NM_017439	exon18	c.T1483G	p.W495G	TATTCCAAGTGAG	.	92	41	113	0	.	514	C	76982269	A	C	76982269	3	2	184	1	0	0	0	0	1	0	0	0	11934	130	5	5	1137	5	PION	7	76982269	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	3229444	76982269	82156394	97	23135											
MTERF	7978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91503797	91503797	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MTERF	NM_006980	exon3	c.A311T	p.E104V	TCCTGCTCATTGG	.	91	35	92	0	.	90	A	91503797	T	A	91503797	3	1	184	1	0	0	0	0	1	0	0	0	9918	1551	54	4	892	4	MTERF	7	91503797	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	14521528	91503797	67634866	98	23136											
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117307000	117307000	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CFTR	NM_000492	exon27	c.C4281T	p.I1427I	TTCCATCCAGAAA	.	105	47	89	0	.	518	T	117307000	C	T	117307000	2	4	184	1	0	0	0	0	0	0	0	1	3294	845	30	3		3	CFTR	7	117307000	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	25803203	117307000	41831663	99	23137											
CPA5	93979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	130002351	130002351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CPA5	NM_080385	exon8	c.C607A	p.H203N	ATCACCCATGCCA	.	35	22	34	0	.	92	A	130002351	C	A	130002351	3	1	184	1	0	0	0	0	1	0	0	0	3793	594	21	3	629	3	CPA5	7	130002351	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	12695351	130002351	29136312	100	23138											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	136700608	136700608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CHRM2	NM_001006632	exon3	c.996delA	p.P332fs	GACCCCAAAAAGT	.	76	40	73	0	.	94	-	136700608	A	-	136700608	7	5	184	1	0	1	0	1	0	0	0	0	3377	117	5	0	998	0	CHRM2	7	136700608	Frame_Shift_Del	DEL	A	TCGA-RC-A6M4-01A-11D-A32G-10	6698257	136700608	22438055	101	23139											
OR9A4	130075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141618728	141618728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OR9A4	NM_001001656	exon1	c.G53T	p.G18V	TCCCTGGCTCTGA	.	125	43	145	1	.	91	T	141618728	G	T	141618728	3	4	184	1	0	0	0	0	1	0	0	0	11249	1203	42	3	55	3	OR9A4	7	141618728	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	4918120	141618728	17519935	102	23140											
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27315905	27315905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PTK2B	NM_173174	exon36	c.A2909T	p.E970V	TAAGTGAGGAGTG	.	16	15	43	0	.	1378	T	27315905	A	T	27315905	3	4	184	1	0	0	0	0	1	0	0	0	12763	304	11	4	3027	4	PTK2B	8	27315905	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		27315905	119048117	103	23141											
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70541750	70541750	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SULF1	NM_001128205	exon19	c.A2120T	p.Q707L	CTGCTCAGGAAGT	.	224	54	117	0	.	518	T	70541750	A	T	70541750	3	4	184	1	0	0	0	0	1	0	0	0	15369	188	7	4	2178	4	SULF1	8	70541750	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	43225845	70541750	75822272	104	23142											
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73939235	73939235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TERF1	NM_017489	exon6	c.A835T	p.S279C	AAACCTAGTGGTA	.	42	10	24	0	.	228	T	73939235	A	T	73939235	3	4	184	1	0	0	0	0	1	0	0	0	15758	420	15	4	857	4	TERF1	8	73939235	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	3397485	73939235	72424787	105	23143											
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88249211	88249211	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CNBD1	NM_173538	exon6	c.T642C	p.Y214Y	CGTGTATAAAAAT	.	153	53	87	0	.	3	C	88249211	T	C	88249211	2	2	184	1	0	0	0	0	0	0	0	1	3591	1413	49	2		2	CNBD1	8	88249211	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	14309976	88249211	58114811	106	23144											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113529405	113529405	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CSMD3	NM_198123	exon28	c.T4614A	p.T1538T	ATTTCGAGTCCCA	.	125	14	72	0	.	1132	T	113529405	A	T	113529405	2	4	184	1	0	0	0	0	0	0	0	1	3946	291	11	4		4	CSMD3	8	113529405	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	25280194	113529405	32834617	107	23145											
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133192469	133192469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNQ3	NM_004519	exon4	c.C712A	p.L238M	TCCGCAGCATGCG	.	57	9	35	0	.	138	T	133192469	G	T	133192469	3	4	184	1	0	0	0	0	1	0	0	0	8084	962	34	3	1954	3	KCNQ3	8	133192469	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	19663064	133192469	13171553	108	23146											
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142190927	142190927	+	Missense_Mutation	SNP	C	C	T	rs201075864		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DENND3	NM_014957	exon17	c.C2678T	p.A893V	CACAAGCGGTGGA	.	66	16	25	0	C|0.999;T|0.001	91	T	142190927	C	T	142190927	3	4	184	1	0	0	0	0	1	0	0	0	4432	768	27	1	2740	1	DENND3	8	142190927	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	8998458	142190927	4173095	109	23147											
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144408432	144408432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TOP1MT	NM_052963	exon4	c.A443G	p.K148R	GCGGCCTTGTCCA	.	163	9	68	0	.	91	C	144408432	T	C	144408432	3	2	184	1	0	0	0	0	1	0	0	0	16361	1609	56	2	1406	2	TOP1MT	8	144408432	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	2217505	144408432	1955590	110	23148											
RRAGA	10670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19050112	19050112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RRAGA	NM_006570	exon1	c.C455T	p.S152F	GTCTGTCTCGCCC	.	52	18	62	0	.	90	T	19050112	C	T	19050112	3	4	184	1	0	0	0	0	1	0	0	0	13672	913	32	3	457	3	RRAGA	9	19050112	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10		19050112	122163319	111	23149											
IFNA6	3443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21350829	21350829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IFNA6	NM_021002	exon1	c.T58A	p.C20S	GAGAGCAGCTTGA	.	69	23	87	0	.	68	T	21350829	A	T	21350829	3	4	184	1	0	0	0	0	1	0	0	0	7541	188	7	4	513	4	IFNA6	9	21350829	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2300717	21350829	119862602	112	23150											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77435310	77435310	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRPM6	NM_017662	exon9	c.C1044A	p.I348I	CATGCAGATGATC	.	52	18	32	0	.	335	T	77435310	G	T	77435310	2	4	184	1	0	0	0	0	0	0	0	1	16587	932	33	3		3	TRPM6	9	77435310	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	56084481	77435310	63778121	113	23151											
ERP44	23071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	102784454	102784454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ERP44	NM_015051	exon5	c.G341A	p.R114H	CCATTACGAAACA	.	243	52	220	0	.	90	T	102784454	C	T	102784454	3	4	184	1	0	0	0	0	1	0	0	0	5243	536	19	1	911	1	ERP44	9	102784454	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	25349144	102784454	38428977	114	23152											
DBC1	1620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	121929740	121929740	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DBC1	NM_014618	exon8	c.C1908T	p.G636G	CACGGGGCCCTGG	.	87	46	63	1	.	582	A	121929740	G	A	121929740	2	1	184	1	0	0	0	0	0	0	0	1	4247	1190	42	3		3	DBC1	9	121929740	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	19145286	121929740	19283691	115	23153											
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	121930107	121930107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DBC1	NM_014618	exon8	c.C1541A	p.T514N	AAGAAGGTGTCGA	.	68	25	57	0	.	582	T	121930107	G	T	121930107	3	4	184	1	0	0	0	0	1	0	0	0	4247	1261	44	3	748	3	DBC1	9	121930107	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	367	121930107	19283324	116	23154											
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130929424	130929424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CIZ1	NM_001257975	exon16	c.C2483A	p.S828Y	TCTCTGGATATAT	.	60	29	53	0	.	92	T	130929424	G	T	130929424	3	4	184	1	0	0	0	0	1	0	0	0	3441	1174	41	3	393	3	CIZ1	9	130929424	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	8999317	130929424	10284007	117	23155											
TUBB8	347688	broad.mit.edu;mdanderson.org	37	10	93652	93652	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TUBB8	NM_177987	exon4	c.A680T	p.H227L	ACCAGGTGGTTCA	.	24	9	20	0	.	69	A	93652	T	A	93652	3	1	184	1	0	0	0	0	1	0	0	0	16758	1696	59	4	658	4	TUBB8	10	93652	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10		93652	135441095	118	23156											
IDI1	3422	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	1094803	1094803	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IDI1	NM_004508	exon2	c.140+1G>A	.	ACAGTACCTGATC	.	52	22	56	0	.	90	T	1094803	C	T	1094803	5	4	184	1	0	0	0	0	0	0	1	0	7499	521	18	3	733	3	IDI1	10	1094803	Splice_Site	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	1001151	1094803	134439944	119	23157											
PIP4K2A	5305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22829005	22829005	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PIP4K2A	NM_005028	exon10	c.1037-2A>T	.	CGAGTCTGCAGAG	.	46	22	36	0	.	665	A	22829005	T	A	22829005	5	1	184	1	0	0	0	0	0	0	1	0	11936	1594	55	4	193	4	PIP4K2A	10	22829005	Splice_Site	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	21734202	22829005	112705742	120	23158											
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27793366	27793366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RAB18	NM_001256411	exon1	c.G68C	p.S23T	AGTCCAGGTGAGG	.	55	31	44	0	.	227	C	27793366	G	C	27793366	3	2	184	1	0	0	0	0	1	0	0	0	12903	1014	35	4	70	4	RAB18	10	27793366	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	4964361	27793366	107741381	121	23159											
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88415951	88415951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OPN4	NM_033282	exon2	c.A184G	p.T62A	CTCCCCACGGTTG	.	104	43	105	0	.	69	G	88415951	A	G	88415951	3	3	184	1	0	0	0	0	1	0	0	0	10882	159	6	2	190	2	OPN4	10	88415951	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	60622585	88415951	47118796	122	23160											
KIF20B	9585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91520384	91520384	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIF20B	NM_016195	exon28	c.T4662C	p.N1554N	CAGAAATAAAATA	.	108	54	88	1	.	93	C	91520384	T	C	91520384	2	2	184	1	0	0	0	0	0	0	0	1	8287	1403	49	2		2	KIF20B	10	91520384	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	3104433	91520384	44014363	123	23161											
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100995494	100995494	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HPSE2	NM_001166246	exon1	c.A66T	p.L22L	CGGGGCTAGGCAC	.	102	49	103	0	.	91	A	100995494	T	A	100995494	2	1	184	1	0	0	0	0	0	0	0	1	7345	1509	53	4		4	HPSE2	10	100995494	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	9475110	100995494	34539253	124	23162											
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102269083	102269083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SEC31B	NM_015490	exon4	c.A389G	p.N130S	AAAGGATTCAAGT	.	70	22	70	0	.	91	C	102269083	T	C	102269083	3	2	184	1	0	0	0	0	1	0	0	0	13999	1493	52	2	3242	2	SEC31B	10	102269083	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	1273589	102269083	33265664	125	23163											
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126715391	126715391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CTBP2	NM_022802	exon1	c.A938T	p.Q313L	AAGCCCTGCTGCA	.	30	27	74	0	.	90	A	126715391	T	A	126715391	3	1	184	1	0	0	0	0	1	0	0	0	3998	1580	55	4	2055	4	CTBP2	10	126715391	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	24446308	126715391	8819356	126	23164											
OR52R1	119695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4824853	4824853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OR52R1	NM_001005177	exon1	c.C758A	p.A253D	TAAAGAGCCAAGA	.	58	13	50	0	.	69	T	4824853	G	T	4824853	3	4	184	1	0	0	0	0	1	0	0	0	11131	971	34	3	192	3	OR52R1	11	4824853	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		4824853	130181663	127	23165											
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7437386	7437386	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SYT9	NM_175733	exon4	c.A1158G	p.G386G	AACAGGAGCATCA	.	52	14	67	0	.	155	G	7437386	A	G	7437386	2	3	184	1	0	0	0	0	0	0	0	1	15478	291	11	2		2	SYT9	11	7437386	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2612533	7437386	127569130	128	23166											
TRIM49	57093	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	89531677	89531677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRIM49	NM_020358	exon8	c.G980A	p.S327N	AGAAAACTTCTAG	.	74	17	96	0	.	84	T	89531677	C	T	89531677	3	4	184	1	0	0	0	0	1	0	0	0	16521	565	20	3	382	3	TRIM49	11	89531677	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	82094291	89531677	45474839	129	23167											
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134188589	134188589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GLB1L3	NM_001080407	exon19	c.C1844A	p.P615H	TTGGGCCTCAGAA	.	84	37	120	0	.	69	A	134188589	C	A	134188589	3	1	184	1	0	0	0	0	1	0	0	0	6430	681	24	3	1918	3	GLB1L3	11	134188589	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	44656912	134188589	817927	130	23168											
FOXM1	2305	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2983155	2983155	+	Missense_Mutation	SNP	G	G	A	rs143720765	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FOXM1	NM_001243089	exon2	c.C490T	p.R164W	TCTCCCGTTTCTG	.	141	78	145	1	G|1.000;A|0.000	227	A	2983155	G	A	2983155	3	1	184	1	0	0	0	0	1	0	0	0	6018	1144	40	1	1951	1	FOXM1	12	2983155	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		2983155	130868740	131	23169											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31576572	31576572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DENND5B	NM_144973	exon11	c.A2429T	p.Q810L	CTGTCCTGAAATT	.	134	85	134	0	.	24	A	31576572	T	A	31576572	3	1	184	1	0	0	0	0	1	0	0	0	4437	1580	55	4	1439	4	DENND5B	12	31576572	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	28593417	31576572	102275323	132	23170											
ZCRB1	85437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	42711634	42711634	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZCRB1	NM_033114	exon4	c.T180C	p.D60D	GTCTTTATCCAAA	.	98	62	133	0	.	91	G	42711634	A	G	42711634	2	3	184	1	0	0	0	0	0	0	0	1	17593	446	16	2		2	ZCRB1	12	42711634	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	11135062	42711634	91140261	133	23171											
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48370680	48370680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	COL2A1	NM_001844	exon48	c.A3350T	p.D1117V	CCTTTGTCACCTC	.	41	17	55	0	.	92	A	48370680	T	A	48370680	3	1	184	1	0	0	0	0	1	0	0	0	3687	1667	58	4	1141	4	COL2A1	12	48370680	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	5659046	48370680	85481215	134	23172											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49433836	49433836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MLL2	NM_003482	exon31	c.G7717A	p.G2573S	GCTTGCCCAAGGT	.	53	8	60	0	.	612	T	49433836	C	T	49433836	3	4	184	1	0	0	0	0	1	0	0	0	9621	623	22	3	8992	3	MLL2	12	49433836	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	1063156	49433836	84418059	135	23173											
KCNH3	23416	broad.mit.edu;mdanderson.org	37	12	49943273	49943273	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNH3	NM_012284	exon9	c.C1518T	p.R506R	CCAGCGCATGTAC	.	35	11	47	0	.	90	T	49943273	C	T	49943273	2	4	184	1	0	0	0	0	0	0	0	1	8033	697	25	3		3	KCNH3	12	49943273	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	509437	49943273	83908622	136	23174											
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53553988	53553988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CSAD	NM_015989	exon14	c.A1163C	p.D388A	AGACAGTCCACAC	.	33	5	29	0	.	91	G	53553988	T	G	53553988	3	3	184	1	0	0	0	0	1	0	0	0	3925	1667	58	5	415	5	CSAD	12	53553988	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	3610715	53553988	80297907	137	23175											
OR6C2	341416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55846722	55846722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OR6C2	NM_054105	exon1	c.A725T	p.H242L	CATCCCACATGAT	.	134	47	175	0	.	70	T	55846722	A	T	55846722	3	4	184	1	0	0	0	0	1	0	0	0	11191	159	6	4	727	4	OR6C2	12	55846722	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2292734	55846722	78005173	138	23176											
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69233083	69233083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MDM2	NM_002392	exon11	c.A948C	p.E316D	CAATGAAATGAAT	.	33	16	45	0	.	1270	C	69233083	A	C	69233083	3	2	184	1	0	0	0	0	1	0	0	0	9413	11	1	5	990	5	MDM2	12	69233083	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	13386361	69233083	64618812	139	23177											
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123702951	123702951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MPHOSPH9	NM_022782	exon2	c.A512T	p.E171V	CTTTGCTCATTTC	.	312	76	349	0	.	514	A	123702951	T	A	123702951	3	1	184	1	0	0	0	0	1	0	0	0	9728	1551	54	4	2659	4	MPHOSPH9	12	123702951	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	54469868	123702951	10148944	140	23178											
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56122805	56122805	+	Silent	SNP	A	A	G	rs143735954		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KTN1	NM_004986	exon29	c.A2847G	p.L949L	CATGCTAAAAGAG	.	278	127	249	1	A|1.000;G|0.000	1147	G	56122805	A	G	56122805	2	3	184	1	0	0	0	0	0	0	0	1	8585	349	13	2		2	KTN1	14	56122805	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		56122805	51226735	141	23179											
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652001	88652001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNK10	NM_138318	exon7	c.T1510A	p.S504T	TGCTGGAGTTGTC	.	254	122	219	1	.	95	T	88652001	A	T	88652001	3	4	184	1	0	0	0	0	1	0	0	0	8059	304	11	4	125	4	KCNK10	14	88652001	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	32529196	88652001	18697539	142	23180											
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	99641711	99641711	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	BCL11B	NM_138576	exon4	c.T1462A	p.S488T	CGTCGGAGCGGCC	.	27	13	28	0	.	1147	T	99641711	A	T	99641711	3	4	184	1	0	0	0	0	1	0	0	0	1364	304	11	4	1226	4	BCL11B	14	99641711	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	10989710	99641711	7707829	143	23181											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101350239	101350239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RTL1	NM_001134888	exon1	c.A887T	p.Q296L	CCGCCCTGCCTGA	.	33	16	34	0	.	46	A	101350239	T	A	101350239	3	1	184	1	0	0	0	0	1	0	0	0	13724	1580	55	4	3193	4	RTL1	14	101350239	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	1708528	101350239	5999301	144	23182											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414443	105414443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AHNAK2	NM_138420	exon7	c.G7345T	p.V2449L	CCTCCACGCTGGG	.	57	20	60	0	.	47	A	105414443	C	A	105414443	3	1	184	1	0	0	0	0	1	0	0	0	415	536	19	1	10046	1	AHNAK2	14	105414443	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	4064204	105414443	1935097	145	23183											
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22848918	22848918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TUBGCP5	NM_052903	exon10	c.A965T	p.Q322L	ATGGCCAGGTTGT	.	52	27	62	0	.	91	T	22848918	A	T	22848918	3	4	184	1	0	0	0	0	1	0	0	0	16766	188	7	4	1003	4	TUBGCP5	15	22848918	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		22848918	79682474	146	23184											
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43574767	43574767	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TGM7	NM_052955	exon8	c.A1056T	p.P352P	GTATCCTGGTGGG	.	41	23	41	0	.	92	A	43574767	T	A	43574767	2	1	184	1	0	0	0	0	0	0	0	1	15832	1567	55	4		4	TGM7	15	43574767	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	20725849	43574767	58956625	147	23185											
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	67477190	67477190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SMAD3	NM_005902	exon7	c.A997G	p.K333E	GTCTGCAAGATCC	.	43	24	57	0	.	904	G	67477190	A	G	67477190	3	3	184	1	0	0	0	0	1	0	0	0	14759	131	5	2	1101	2	SMAD3	15	67477190	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	23902423	67477190	35054202	148	23186											
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	73615218	73615218	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HCN4	NM_005477	exon8	c.C3216T	p.P1072P	GAGCGGGGGTGTG	.	21	14	29	0	.	96	A	73615218	G	A	73615218	2	1	184	1	0	0	0	0	0	0	0	1	6999	1219	43	3		3	HCN4	15	73615218	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	6138028	73615218	28916174	149	23187											
ABCA3	21	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2338103	2338103	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABCA3	NM_001089	exon21	c.C2928A	p.S976S	CAGCTGGGAGGTC	.	23	11	37	1	.	1015	T	2338103	G	T	2338103	2	4	184	1	0	0	0	0	0	0	0	1	33	1219	43	3		3	ABCA3	16	2338103	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		2338103	88016650	150	23188											
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3716009	3716009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRAP1	NM_016292	exon12	c.G1346A	p.R449Q	CCCTCCCGCATGA	.	95	41	88	0	.	226	T	3716009	C	T	3716009	3	4	184	1	0	0	0	0	1	0	0	0	16452	652	23	1	796	1	TRAP1	16	3716009	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	1377906	3716009	86638744	151	23189											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27751968	27751968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA0556	NM_015202	exon15	c.T2350A	p.W784R	CTGGCCTGGAAGG	.	26	12	26	0	.	141	A	27751968	T	A	27751968	3	1	184	1	0	0	0	0	1	0	0	0	8183	1580	55	4	2408	4	KIAA0556	16	27751968	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	24035959	27751968	62602785	152	23190											
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30779293	30779293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RNF40	NM_014771	exon12	c.G1508A	p.R503Q	CCCAGCGATACAA	.	49	17	51	0	.	226	A	30779293	G	A	30779293	3	1	184	1	0	0	0	0	1	0	0	0	13493	1058	37	1	1550	1	RNF40	16	30779293	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	3027325	30779293	59575460	153	23191											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51174758	51174758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SALL1	NM_002968	exon2	c.G1375A	p.G459R	CACTCCCAAAGAC	.	52	26	57	0	.	98	T	51174758	C	T	51174758	3	4	184	1	0	0	0	0	1	0	0	0	13810	594	21	3	2607	3	SALL1	16	51174758	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	20395465	51174758	39179995	154	23192											
CES1	1066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55850865	55850865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CES1	NM_001025195	exon8	c.T916C	p.S306P	CCAGAGATAAGAA	.	60	9	53	0	.	68	G	55850865	A	G	55850865	3	3	184	1	0	0	0	0	1	0	0	0	3269	333	12	2	818	2	CES1	16	55850865	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	4676107	55850865	34503888	155	23193											
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67320230	67320230	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PLEKHG4	NM_001129728	exon15	c.T2496C	p.D832D	CTCCGATGCCCTG	.	63	27	45	0	.	92	C	67320230	T	C	67320230	2	2	184	1	0	0	0	0	0	0	0	1	12071	1461	51	2		2	PLEKHG4	16	67320230	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	11469365	67320230	23034523	156	23194											
MTSS1L	92154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70698128	70698128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MTSS1L	NM_138383	exon15	c.C1696T	p.R566C	GTGTGCGGCGGAT	.	41	21	30	0	.	68	A	70698128	G	A	70698128	3	1	184	1	0	0	0	0	1	0	0	0	9963	1116	39	1	551	1	MTSS1L	16	70698128	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	3377898	70698128	19656625	157	23195											
ATMIN	23300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81076059	81076059	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ATMIN	NM_015251	exon3	c.T636C	p.T212T	CCGAACTGGGCAC	.	31	14	32	0	.	68	C	81076059	T	C	81076059	2	2	184	1	0	0	0	0	0	0	0	1	1110	1567	55	2		2	ATMIN	16	81076059	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	10377931	81076059	9278694	158	23196											
PMP22	5376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15162456	15162456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PMP22	NM_153322	exon2	c.T133C	p.S45P	AGGAAGAGGTGCT	.	51	46	74	0	.	90	G	15162456	A	G	15162456	3	3	184	1	0	0	0	0	1	0	0	0	12139	304	11	2	361	2	PMP22	17	15162456	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		15162456	66032754	159	23197											
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19698995	19698995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ULK2	NM_001142610	exon20	c.C2041A	p.P681T	ATATAGGAGTCTT	.	116	109	204	0	.	334	T	19698995	G	T	19698995	3	4	184	1	0	0	0	0	1	0	0	0	16973	1174	41	3	1101	3	ULK2	17	19698995	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	4536539	19698995	61496215	160	23198											
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30621329	30621329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RHBDL3	NM_138328	exon5	c.A536G	p.Y179C	TCCTCTACAATGG	.	118	55	112	0	.	91	G	30621329	A	G	30621329	3	3	184	1	0	0	0	0	1	0	0	0	13323	391	14	2	554	2	RHBDL3	17	30621329	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	10922334	30621329	50573881	161	23199											
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33504605	33504605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UNC45B	NM_173167	exon17	c.T2237A	p.L746Q	CCAACCTGTCTGG	.	47	24	31	0	.	157	A	33504605	T	A	33504605	3	1	184	1	0	0	0	0	1	0	0	0	16986	1580	55	4	2299	4	UNC45B	17	33504605	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	2883276	33504605	47690605	162	23200											
KRT25	147183	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38907463	38907463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KRT25	NM_181534	exon4	c.T785A	p.L262H	TCTGCAAGGGCTT	.	74	36	89	1	.	92	T	38907463	A	T	38907463	3	4	184	1	0	0	0	0	1	0	0	0	8462	72	3	4	587	4	KRT25	17	38907463	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	5402858	38907463	42287747	163	23201											
KRT31	3881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39550414	39550414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KRT31	NM_002277	exon7	c.A1105T	p.S369C	GATTGCTGGGCAG	.	53	27	44	0	.	90	A	39550414	T	A	39550414	3	1	184	1	0	0	0	0	1	0	0	0	8467	1580	55	4	149	4	KRT31	17	39550414	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	642951	39550414	41644796	164	23202											
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42854925	42854925	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ADAM11	NM_002390	exon22	c.C1857T	p.I619I	AGACATCAGTAGT	.	64	28	63	0	.	227	T	42854925	C	T	42854925	2	4	184	1	0	0	0	0	0	0	0	1	235	816	29	3		3	ADAM11	17	42854925	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	3304511	42854925	38340285	165	23203											
KIF18B	146909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43010040	43010040	+	Splice_Site	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIF18B	NM_001264573	exon10	c.1238+1G>T	.	AACTCACTGTTCT	.	27	11	22	0	.	70	A	43010040	C	A	43010040	5	1	184	1	0	0	0	0	0	0	1	0	8281	579	20	3	1359	3	KIF18B	17	43010040	Splice_Site	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	155115	43010040	38185170	166	23204											
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45890656	45890656	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OSBPL7	NM_145798	exon16	c.A1713G	p.R571R	GAAGCCTCGGTCA	.	30	13	26	0	.	68	C	45890656	T	C	45890656	2	2	184	1	0	0	0	0	0	0	0	1	11282	1538	54	2		2	OSBPL7	17	45890656	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	2880616	45890656	35304554	167	23205											
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72519756	72519756	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CD300LB	NM_174892	exon3	c.C516T	p.T172T	GCTGTTGGTAGGT	.	87	34	77	0	.	91	A	72519756	G	A	72519756	2	1	184	1	0	0	0	0	0	0	0	1	2999	1335	47	3		3	CD300LB	17	72519756	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	26629100	72519756	8675454	168	23206											
UNK	85451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73805856	73805856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UNK	NM_001080419	exon2	c.C120A	p.F40L	AGAATTCCGCACA	.	54	21	45	0	.	68	A	73805856	C	A	73805856	3	1	184	1	0	0	0	0	1	0	0	0	16997	854	30	3	358	3	UNK	17	73805856	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	1286100	73805856	7389354	169	23207											
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417483	70417483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NETO1	NM_001201465	exon9	c.C1355A	p.A452D	ATAGAAGCATCTC	.	202	117	170	0	.	94	T	70417483	G	T	70417483	3	4	184	1	0	0	0	0	1	0	0	0	10339	971	34	3	254	3	NETO1	18	70417483	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10		70417483	7659765	170	23208											
FUT5	2527	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	5866696	5866696	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FUT5	NM_002034	exon2	c.A1041T	p.A347A	AGCCAGTGCCCAG	.	115	41	115	0	.	90	A	5866696	T	A	5866696	2	1	184	1	0	0	0	0	0	0	0	1	6107	1683	59	4		4	FUT5	19	5866696	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10		5866696	53262287	171	23209											
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6773000	6773000	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VAV1	NM_005428	exon1	c.A182T	p.N61I	AGGTCAACCTGCG	.	67	29	78	0	.	1276	T	6773000	A	T	6773000	3	4	184	1	0	0	0	0	1	0	0	0	17128	43	2	4	184	4	VAV1	19	6773000	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	906304	6773000	52355983	172	23210											
LYL1	4066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13211833	13211833	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	LYL1	NM_005583	exon2	c.C153T	p.S51S	GGGCGAGGAGCCT	.	32	8	45	0	.	658	A	13211833	G	A	13211833	2	1	184	1	0	0	0	0	0	0	0	1	9106	987	35	3		3	LYL1	19	13211833	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	6438833	13211833	45917150	173	23211											
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17716933	17716933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UNC13A	NM_001080421	exon42	c.C5042A	p.A1681D	TCCTTGGCCACCT	.	53	16	76	0	.	25	T	17716933	G	T	17716933	3	4	184	1	0	0	0	0	1	0	0	0	16981	1203	42	3	73	3	UNC13A	19	17716933	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	4505100	17716933	41412050	174	23212											
CRLF1	9244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18710417	18710417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	CRLF1,brain,glioma,+1	CRLF1	NM_004750	exon2	c.C355A	p.R119S	CGTCACGGGCGTG	.	45	18	39	0	.	514	T	18710417	G	T	18710417	3	4	184	1	0	0	0	0	1	0	0	0	3886	1116	39	1	945	1	CRLF1	19	18710417	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	993484	18710417	40418566	175	23213											
PAK4	10298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39664257	39664257	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PAK4	NM_001014832	exon4	c.G705T	p.G235G	AGCGGGGGGCCTG	.	28	17	24	0	.	957	T	39664257	G	T	39664257	2	4	184	1	0	0	0	0	0	0	0	1	11403	1219	43	3		3	PAK4	19	39664257	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	20953840	39664257	19464726	176	23214											
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734142	48734142	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CARD8	NM_001184900	exon6	c.C664G	p.L222V	GCTGCAGGTCCAG	.	28	8	27	0	.	227	C	48734142	G	C	48734142	3	2	184	1	0	0	0	0	1	0	0	0	2651	991	35	4	973	4	CARD8	19	48734142	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	9069885	48734142	10394841	177	23215											
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	48925128	48925128	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GRIN2D	NM_000836	exon10	c.T2178A	p.Y726X	CAACTATCCCGAC	.	87	28	93	0	.	156	A	48925128	T	A	48925128	4	1	184	1	0	0	0	0	0	1	0	0	6782	1442	50	4	2212	4	GRIN2D	19	48925128	Nonsense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	190986	48925128	10203855	178	23216											
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51169670	51169670	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SHANK1	NM_016148	exon22	c.A5547G	p.P1849P	CAGAGGTGGTGGC	.	53	27	56	0	.	153	C	51169670	T	C	51169670	2	2	184	1	0	0	0	0	0	0	0	1	14264	1683	59	2		2	SHANK1	19	51169670	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	2244542	51169670	7959313	179	23217											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668959	53668959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZNF665	NM_024733	exon4	c.T784A	p.Y262N	ACTTGTAAGGTTT	.	85	27	67	0	.	70	T	53668959	A	T	53668959	3	4	184	1	0	0	0	0	1	0	0	0	18070	362	13	4	1256	4	ZNF665	19	53668959	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2499289	53668959	5460024	180	23218											
SIRPB1	10326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1551748	1551748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SIRPB1	NM_006065	exon4	c.A787G	p.R263G	CTGCCCTCATGGG	.	101	48	77	1	.	91	C	1551748	T	C	1551748	3	2	184	1	0	0	0	0	1	0	0	0	14333	1550	54	2	417	2	SIRPB1	20	1551748	Missense_Mutation	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10		1551748	61473772	181	23219											
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2384055	2384055	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TGM6	NM_198994	exon8	c.C1002G	p.V334V	CCATGTCTGGAAT	.	72	35	60	0	.	94	G	2384055	C	G	2384055	2	3	184	1	0	0	0	0	0	0	0	1	15831	900	32	4		4	TGM6	20	2384055	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	832307	2384055	60641465	182	23220											
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8608977	8608977	+	Missense_Mutation	SNP	A	A	T	rs199888561	alternate_allele	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PLCB1	NM_015192	exon4	c.C283T	p.P95S	GGGAACATCGGGC	.	120	59	83	1	A|0.999;G|0.001	297	T	8608977	A	T	8608977	3	4	184	1	0	0	0	0	1	0	0	0	12027	217	8	4	297	4	PLCB1	20	8608977	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	6224922	8608977	54416543	183	23221											
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34451299	34451299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PHF20	NM_016436	exon6	c.G785A	p.R262K	GAGGCAGACCCCC	.	78	31	76	0	.	515	A	34451299	G	A	34451299	3	1	184	1	0	0	0	0	1	0	0	0	11831	942	33	3	803	3	PHF20	20	34451299	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	25842322	34451299	28574221	184	23222											
PI3	5266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43804641	43804641	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PI3	NM_002638	exon2	c.T219G	p.P73P	TAAGCCTGGCTCC	.	89	48	69	0	.	514	G	43804641	T	G	43804641	2	3	184	1	0	0	0	0	0	0	0	1	11870	1567	55	5		5	PI3	20	43804641	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	9353342	43804641	19220879	185	23223											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37618611	37618611	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DOPEY2	NM_005128	exon19	c.C4333T	p.L1445L	AAGCTGCTGCAGG	.	49	14	30	0	.	91	T	37618611	C	T	37618611	2	4	184	1	0	0	0	0	0	0	0	1	4708	796	28	3		3	DOPEY2	21	37618611	Silent	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10		37618611	10511284	186	23224											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46911137	46911137	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	COL18A1	NM_130445	exon22	c.2068-2A>T	.	TCTTCCAGGGAGA	.	165	69	146	0	.	90	T	46911137	A	T	46911137	5	4	184	1	0	0	0	0	0	0	1	0	3675	202	7	4	3507	4	COL18A1	21	46911137	Splice_Site	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	9292526	46911137	1218758	187	23225											
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21369505	21369505	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_001159554	exon1	c.A42T	p.P14P	CTCCCCAGGGGCT	.	40	18	35	0	.	.	T	21369505	A	T	21369505	2	4	184	1	0	0	0	0	0	0	0	1	11344	175	7	4		4	P2RX6	22	21369505	Silent	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10		21369505	29935061	188	23226											
NHS	4810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17745541	17745541	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NHS	NM_198270	exon6	c.T3252C	p.R1084R	CCACCGTCATCCA	.	143	75	143	0	.	197	C	17745541	T	C	17745541	2	2	184	1	0	0	0	0	0	0	0	1	10411	1654	58	2		2	NHS	23	17745541	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10		17745541	137525019	189	23227											
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	44109644	44109644	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	EFHC2	NM_025184	exon5	c.C654A	p.T218T	TTTCAGGGTGTCG	.	85	33	91	0	.	135	T	44109644	G	T	44109644	2	4	184	1	0	0	0	0	0	0	0	1	4947	1219	43	3		3	EFHC2	23	44109644	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	26364103	44109644	111160916	190	23228											
HMGN5	79366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	80370663	80370663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HMGN5	NM_030763	exon7	c.G334T	p.G112X	CTCCTCCCTTTTC	.	532	257	547	0	.	130	A	80370663	C	A	80370663	4	1	184	1	0	0	0	0	0	1	0	0	7238	632	22	3	518	3	HMGN5	23	80370663	Nonsense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	36261019	80370663	74899897	191	23229											
POU3F4	5456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	82764109	82764109	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	POU3F4	NM_000307	exon1	c.G777T	p.A259A	GGAGGCGGATTCG	.	127	54	114	0	.	131	T	82764109	G	T	82764109	2	4	184	1	0	0	0	0	0	0	0	1	12277	1103	39	1		1	POU3F4	23	82764109	Silent	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	2393446	82764109	72506451	192	23230											
APOOL	139322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84301522	84301522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	APOOL	NM_198450	exon2	c.A86G	p.E29G	AACAAGAGGAATC	.	505	250	560	0	.	130	G	84301522	A	G	84301522	3	3	184	1	0	0	0	0	1	0	0	0	814	304	11	2	92	2	APOOL	23	84301522	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	1537413	84301522	70969038	193	23231											
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100104832	100104832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NOX1	NM_013955	exon10	c.C1225G	p.P409A	CAAAGGGGGTGAC	.	293	163	241	0	.	131	C	100104832	G	C	100104832	3	2	184	1	0	0	0	0	1	0	0	0	10556	1232	43	4	485	4	NOX1	23	100104832	Missense_Mutation	SNP	G	TCGA-RC-A6M4-01A-11D-A32G-10	15803310	100104832	55165728	194	23232											
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105011034	105011034	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IL1RAPL2	NM_017416	exon11	c.A1441T	p.R481X	ATTCTCAGACGGG	.	236	112	227	0	.	194	T	105011034	A	T	105011034	4	4	184	1	0	0	0	0	0	1	0	0	7662	180	7	4	1479	4	IL1RAPL2	23	105011034	Nonsense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	4906202	105011034	50259526	195	23233											
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	107423750	107423750	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	COL4A6	NM_001847	exon25	c.T2129A	p.L710X	CCTGGTAATTCAG	.	120	53	114	0	.	199	T	107423750	A	T	107423750	4	4	184	1	0	0	0	0	0	1	0	0	3695	372	13	4	3030	4	COL4A6	23	107423750	Nonsense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2412716	107423750	47846810	196	23234											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109693862	109693862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RGAG1	NM_020769	exon3	c.A17G	p.H6R	CCTTACATTCACT	.	65	29	61	0	.	132	G	109693862	A	G	109693862	3	3	184	1	0	0	0	0	1	0	0	0	13274	217	8	2	19	2	RGAG1	23	109693862	Missense_Mutation	SNP	A	TCGA-RC-A6M4-01A-11D-A32G-10	2270112	109693862	45576698	197	23235											
MAGEA8	4107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149013280	149013280	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MAGEA8	NM_005364	exon3	c.T234A	p.T78T	CAGCACTCTGTGG	.	62	27	56	0	.	130	A	149013280	T	A	149013280	2	1	184	1	0	0	0	0	0	0	0	1	9171	1538	54	4		4	MAGEA8	23	149013280	Silent	SNP	T	TCGA-RC-A6M4-01A-11D-A32G-10	39319418	149013280	6257280	198	23236											
ZNF185	7739	hgsc.bcm.edu;mdanderson.org	37	X	152110314	152110314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZNF185	NM_001178115	exon1	c.C62A	p.A21D	TGCCGGCCGCCAG	.	108	46	91	0	.	133	A	152110314	C	A	152110314	3	1	184	1	0	0	0	0	1	0	0	0	17749	739	26	3	1450	3	ZNF185	23	152110314	Missense_Mutation	SNP	C	TCGA-RC-A6M4-01A-11D-A32G-10	3097034	152110314	3160246	199	23237											
B4GALT2	8704	ucsc.edu;bcgsc.ca	37	1	44451245	44451245	+	Missense_Mutation	SNP	G	G	A	rs200368860		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	B4GALT2	NM_030587	exon6	c.G1007A	p.R336H	GCTACCGCATGAT	.	39	4	38	0	.	92	A	44451245	G	A	44451245	3	1	185	1	0	0	0	0	1	0	0	0	1271	1087	38	1	938	1	B4GALT2	1	44451245	Missense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10		44451245	204799376	1	23238											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32768519	32768519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	BIRC6	NM_016252	exon62	c.C12503T	p.P4168L	GTCTTCCGGGCTA	.	90	12	90	0	.	233	T	32768519	C	T	32768519	3	4	185	1	0	0	0	0	1	0	0	0	1438	652	23	1	12749	1	BIRC6	2	32768519	Missense_Mutation	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10		32768519	210430854	2	23239											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	61607465	61607465	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	USP34	NM_014709	exon7	c.C853T	p.R285X	TCTGTCGTAACTC	.	84	12	132	0	.	579	A	61607465	G	A	61607465	4	1	185	1	0	0	0	0	0	1	0	0	17062	1153	40	1	10083	1	USP34	2	61607465	Nonsense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10	28838946	61607465	181591908	3	23240											
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	30903143	30903143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	GADL1	NM_207359	exon2	c.A152T	p.E51V	CAGGCCTCTTCAA	.	244	18	265	0	.	90	A	30903143	T	A	30903143	3	1	185	1	0	0	0	0	1	0	0	0	6185	1551	54	4	1469	4	GADL1	3	30903143	Missense_Mutation	SNP	T	TCGA-RC-A6M5-01A-11D-A32G-10		30903143	167119287	4	23241											
GRID2	2895	broad.mit.edu;bcgsc.ca	37	4	94032016	94032016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	GRID2	NM_001510	exon4	c.G647A	p.R216K	CCATGAGAATAGA	.	129	12	150	1	.	159	A	94032016	G	A	94032016	3	1	185	1	0	0	0	0	1	0	0	0	6772	942	33	3	661	3	GRID2	4	94032016	Missense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10		94032016	97122260	5	23242											
ADH4	127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100052694	100052694	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ADH4	NM_000670	exon6	c.G804C	p.V268V	AAAATCCACACCT	.	98	10	86	0	.	228	G	100052694	C	G	100052694	2	3	185	1	0	0	0	0	0	0	0	1	310	581	21	4		4	ADH4	4	100052694	Silent	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10	6020678	100052694	91101582	6	23243											
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159646689	159646689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	FNDC1	NM_032532	exon8	c.G1007A	p.R336H	CAGTCCGTATTTC	.	78	18	80	0	.	138	A	159646689	G	A	159646689	3	1	185	1	0	0	0	0	1	0	0	0	5968	1145	40	1	1037	1	FNDC1	6	159646689	Missense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10		159646689	11468378	7	23244											
NFE2L3	9603	broad.mit.edu;ucsc.edu	37	7	26224602	26224602	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NFE2L3	NM_004289	exon4	c.T1284C	p.N428N	TCACAATAATACC	.	89	14	84	1	.	94	C	26224602	T	C	26224602	2	2	185	1	0	0	0	0	0	0	0	1	10369	1403	49	2		2	NFE2L3	7	26224602	Silent	SNP	T	TCGA-RC-A6M5-01A-11D-A32G-10		26224602	132914061	8	23245											
CBLL1	79872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107399297	107399297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CBLL1	NM_024814	exon6	c.A1150G	p.I384V	CCACCAATAACCC	.	89	21	92	0	.	229	G	107399297	A	G	107399297	3	3	185	1	0	0	0	0	1	0	0	0	2703	101	4	2	1172	2	CBLL1	7	107399297	Missense_Mutation	SNP	A	TCGA-RC-A6M5-01A-11D-A32G-10	81174695	107399297	51739366	9	23246											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2017578	2017578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MYOM2	NM_003970	exon8	c.A755T	p.D252V	GGGGAGACGAGGA	.	271	33	272	0	.	95	T	2017578	A	T	2017578	3	4	185	1	0	0	0	0	1	0	0	0	10092	275	10	4	781	4	MYOM2	8	2017578	Missense_Mutation	SNP	A	TCGA-RC-A6M5-01A-11D-A32G-10		2017578	144346444	10	23247											
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	12600698	12600698	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	LONRF1	NM_152271	exon2	c.T815G	p.L272R	TGAAAAAGAACTG	.	222	20	216	0	.	91	C	12600698	A	C	12600698	3	2	185	1	0	0	0	0	1	0	0	0	8894	72	3	5	1550	5	LONRF1	8	12600698	Missense_Mutation	SNP	A	TCGA-RC-A6M5-01A-11D-A32G-10	10583120	12600698	133763324	11	23248											
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	13948007	13948007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SGCZ	NM_139167	exon8	c.C884A	p.P295Q	CCTGCTGGAGAAA	.	66	5	66	0	.	93	T	13948007	G	T	13948007	3	4	185	1	0	0	0	0	1	0	0	0	14204	1348	47	3	58	3	SGCZ	8	13948007	Missense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10	1347309	13948007	132416015	12	23249											
COL14A1	7373	broad.mit.edu;bcgsc.ca	37	8	121238908	121238908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	COL14A1	NM_021110	exon16	c.C1907T	p.T636M	AGGTGACGACAGA	.	73	6	56	0	.	543	T	121238908	C	T	121238908	3	4	185	1	0	0	0	0	1	0	0	0	3671	536	19	1	1965	1	COL14A1	8	121238908	Missense_Mutation	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10	107290901	121238908	25125114	13	23250											
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18122743	18122743	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MRC1	NM_002438	exon4	c.C753T	p.N251N	ACAGAACGCTGAG	.	189	18	181	0	.	68	T	18122743	C	T	18122743	2	4	185	1	0	0	0	0	0	0	0	1	9756	535	19	1		1	MRC1	10	18122743	Silent	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10		18122743	117412004	14	23251											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	129903267	129903267	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MKI67	NM_002417	exon13	c.6837delG	p.M2279fs	TGCTTTCATGTCT	.	205	23	201	0	.	519	-	129903267	C	-	129903267	7	5	185	1	0	1	0	1	0	0	0	0	9598	826	29	0	2945	0	MKI67	10	129903267	Frame_Shift_Del	DEL	C	TCGA-RC-A6M5-01A-11D-A32G-10	111780524	129903267	5631480	15	23252											
FAM155A	728215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	108518523	108518523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	FAM155A	NM_001080396	exon1	c.G422C	p.G141A	CCGCCGCCGCCGC	.	65	15	50	0	.	23	G	108518523	C	G	108518523	3	3	185	1	0	0	0	0	1	0	0	0	5465	739	26	4	966	4	FAM155A	13	108518523	Missense_Mutation	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10		108518523	6651355	16	23253											
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	43021296	43021296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CDAN1	NM_138477	exon19	c.A2570G	p.N857S	GGCTGGTTGTGGA	.	69	6	55	0	.	92	C	43021296	T	C	43021296	3	2	185	1	0	0	0	0	1	0	0	0	3054	1725	60	2	1153	2	CDAN1	15	43021296	Missense_Mutation	SNP	T	TCGA-RC-A6M5-01A-11D-A32G-10		43021296	59510096	17	23254											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101608980	101608980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	LRRK1	NM_024652	exon34	c.G5975A	p.R1992K	GCGCCAGGGAGTT	.	112	8	96	0	.	602	A	101608980	G	A	101608980	3	1	185	1	0	0	0	0	1	0	0	0	9032	1000	35	3	6105	3	LRRK1	15	101608980	Missense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10	58587684	101608980	922412	18	23255											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15815347	15815347	+	Silent	SNP	G	G	T	rs144823441	alternate_allele	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MYH11	NM_001040114	exon33	c.C4531A	p.R1511R	TGGTCCGCTCGAG	.	182	31	175	0	G|1.000;A|0.000	666	T	15815347	G	T	15815347	2	4	185	1	0	0	0	0	0	0	0	1	10031	1086	38	1		1	MYH11	16	15815347	Silent	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10		15815347	74539406	19	23256											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51173735	51173735	+	Missense_Mutation	SNP	C	C	T	rs200755920		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SALL1	NM_002968	exon2	c.G2398A	p.D800N	AGCTGTCGGGGAC	.	133	10	144	0	C|0.999;T|0.000	98	T	51173735	C	T	51173735	3	4	185	1	0	0	0	0	1	0	0	0	13810	884	31	1	1584	1	SALL1	16	51173735	Missense_Mutation	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10	35358388	51173735	39181018	20	23257											
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu	37	19	1487019	1487019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	PCSK4	NM_017573	exon8	c.G901A	p.G301S	GGCCGCCGTTGCC	.	69	4	50	0	.	90	T	1487019	C	T	1487019	3	4	185	1	0	0	0	0	1	0	0	0	11602	652	23	1	1398	1	PCSK4	19	1487019	Missense_Mutation	SNP	C	TCGA-RC-A6M5-01A-11D-A32G-10		1487019	57641964	21	23258											
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3806099	3806099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ZFR2	NM_015174	exon19	c.C2668T	p.R890W	TCTGCCGGAAGGC	.	88	10	69	0	.	70	A	3806099	G	A	3806099	3	1	185	1	0	0	0	0	1	0	0	0	17657	1115	39	1	155	1	ZFR2	19	3806099	Missense_Mutation	SNP	G	TCGA-RC-A6M5-01A-11D-A32G-10	2319080	3806099	55322884	22	23259											
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12059950	12059950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ZNF700	NM_001271848	exon4	c.T1120C	p.F374L	AAAGGCTTTTATT	.	68	9	69	0	.	90	C	12059950	T	C	12059950	3	2	185	1	0	0	0	0	1	0	0	0	18101	1609	56	2	1125	2	ZNF700	19	12059950	Missense_Mutation	SNP	T	TCGA-RC-A6M5-01A-11D-A32G-10	8253851	12059950	47069033	23	23260											
LGALS2	3957	hgsc.bcm.edu;broad.mit.edu	37	22	37966624	37966626	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	LGALS2	NM_006498	exon3	c.206_208del	p.69_70del	CTTCCCGTTGTTC	.	137	11	125	0	.	154	-	37966626	GTT	-	37966624	7	5	185	1	0	1	0	1	0	0	0	0	8742	1144	40	0	198	0	LGALS2	22	37966624	In_Frame_Del	DEL	GTT	TCGA-RC-A6M5-01A-11D-A32G-10		37966624	13337942	24	23261											
NUP50	10762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	45580526	45580526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NUP50	NM_007172	exon8	c.A1397G	p.K466R	AGAAAAAGGATGC	.	118	7	155	0	.	68	G	45580526	A	G	45580526	3	3	185	1	0	0	0	0	1	0	0	0	10766	72	3	2	1423	2	NUP50	22	45580526	Missense_Mutation	SNP	A	TCGA-RC-A6M5-01A-11D-A32G-10	7613902	45580526	5724040	25	23262											
ZBTB48	3104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6642352	6642352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZBTB48	NM_005341	exon3	c.C925T	p.H309Y	AAAGTCCACAACA	.	63	27	84	0	.	514	T	6642352	C	T	6642352	3	4	186	1	0	0	0	0	1	0	0	0	17546	594	21	3	931	3	ZBTB48	1	6642352	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10		6642352	242608269	1	23263											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10408742	10408742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF1B	NM_015074	exon35	c.T3762A	p.H1254Q	TATCCATGAGAAG	.	79	25	78	0	.	93	A	10408742	T	A	10408742	3	1	186	1	0	0	0	0	1	0	0	0	8284	1461	51	4	5385	4	KIF1B	1	10408742	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	3766390	10408742	238841879	2	23264											
PRDM2	7799	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14105627	14105627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRDM2	NM_015866	exon8	c.C1337T	p.S446L	ATGATTCGAGTCC	.	93	8	102	1	.	116	T	14105627	C	T	14105627	3	4	186	1	0	0	0	0	1	0	0	0	12458	893	31	1	1363	1	PRDM2	1	14105627	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	3696885	14105627	235144994	3	23265											
CELA2A	63036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15788106	15788106	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CELA2A	NM_033440	exon3	c.G180T	p.G60G	CGGAGGGTCCCTG	.	122	39	142	0	.	92	T	15788106	G	T	15788106	2	4	186	1	0	0	0	0	0	0	0	1	3211	1248	44	3		3	CELA2A	1	15788106	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	1682479	15788106	233462515	4	23266											
ZMYM1	79830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35563033	35563033	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM1	NM_024772	exon4	c.T285A	p.I95I	AAAAATTCTCCAG	.	231	92	243	1	.	90	A	35563033	T	A	35563033	2	1	186	1	0	0	0	0	0	0	0	1	17696	1771	62	4		4	ZMYM1	1	35563033	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	19774927	35563033	213687588	5	23267											
HPDL	84842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45793225	45793225	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPDL	NM_032756	exon1	c.C405T	p.R135R	GGAGCGCGCTGGC	.	104	40	80	0	.	90	T	45793225	C	T	45793225	2	4	186	1	0	0	0	0	0	0	0	1	7333	755	27	1		1	HPDL	1	45793225	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	10230192	45793225	203457396	6	23268											
MMACHC	25974	broad.mit.edu;ucsc.edu	37	1	45966041	45966041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MMACHC	NM_015506	exon1	c.G37T	p.E13X	AAGATCGAGGACA	.	120	49	123	1	.	90	T	45966041	G	T	45966041	4	4	186	1	0	0	0	0	0	1	0	0	9641	1059	37	1	39	1	MMACHC	1	45966041	Nonsense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	172816	45966041	203284580	7	23269											
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153653014	153653014	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NPR1	NM_000906	exon2	c.C759T	p.T253T	CAGAACCCTCATG	.	97	82	88	0	.	393	T	153653014	C	T	153653014	2	4	186	1	0	0	0	0	0	0	0	1	10594	610	22	3		3	NPR1	1	153653014	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	107686973	153653014	95597607	8	23270											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669510	158669510	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A933T	p.I311I	AAAAAATATCTTA	.	117	42	130	0	.	69	A	158669510	T	A	158669510	2	1	186	1	0	0	0	0	0	0	0	1	11202	1396	49	4		4	OR6K2	1	158669510	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	5016496	158669510	90581111	9	23271	148	2									
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669512	158669512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A931T	p.I311L	AAAATATCTTAGC	.	115	41	130	0	.	69	A	158669512	T	A	158669512	3	1	186	1	0	0	0	0	1	0	0	0	11202	1435	50	4	47	4	OR6K2	1	158669512	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	2	158669512	90581109	10	23272	148	2									
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158817562	158817562	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MNDA	NM_002432	exon6	c.T1032C	p.N344N	GGATAATACAGGA	.	42	36	58	0	.	94	C	158817562	T	C	158817562	2	2	186	1	0	0	0	0	0	0	0	1	9676	1403	49	2		2	MNDA	1	158817562	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	148050	158817562	90433059	11	23273											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096118	167096118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DUSP27	NM_001080426	exon5	c.G1750A	p.V584I	TCCGACGTCAGCC	.	46	31	37	0	.	71	A	167096118	G	A	167096118	3	1	186	1	0	0	0	0	1	0	0	0	4824	1145	40	1	1768	1	DUSP27	1	167096118	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	8278556	167096118	82154503	12	23274											
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167666934	167666934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RCSD1	NM_052862	exon6	c.G1073T	p.G358V	TGAAGGGCGGAGA	.	29	27	37	0	.	517	T	167666934	G	T	167666934	3	4	186	1	0	0	0	0	1	0	0	0	13185	1203	42	3	1095	3	RCSD1	1	167666934	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	570816	167666934	81583687	13	23275											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177030375	177030375	+	Missense_Mutation	SNP	G	G	T	rs138326291	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ASTN1	NM_004319	exon2	c.C310A	p.P104T	CCAAAGGGATATC	.	63	50	79	0	G|1.000;C|0.000	319	T	177030375	G	T	177030375	3	4	186	1	0	0	0	0	1	0	0	0	1064	1232	43	3	3666	3	ASTN1	1	177030375	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	9363441	177030375	72220246	14	23276											
SLC45A3	85414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205628667	205628667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC45A3	NM_033102	exon5	c.C1357A	p.L453M	GGAGCAGGCCACT	.	76	60	73	0	.	98	T	205628667	G	T	205628667	3	4	186	1	0	0	0	0	1	0	0	0	14642	991	35	3	308	3	SLC45A3	1	205628667	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	28598292	205628667	43621954	15	23277											
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245530263	245530263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF26B	NM_018012	exon3	c.C593A	p.A198D	AGGAGGCCATCCA	.	67	29	69	0	.	25	A	245530263	C	A	245530263	3	1	186	1	0	0	0	0	1	0	0	0	8295	739	26	3	603	3	KIF26B	1	245530263	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	39901596	245530263	3720358	16	23278											
ZNF670	93474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247201663	247201663	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF670	NM_033213	exon4	c.G258A	p.Q86Q	TGAATCCTGGCTG	.	69	61	73	1	.	91	T	247201663	C	T	247201663	2	4	186	1	0	0	0	0	0	0	0	1	18074	680	24	3		3	ZNF670	1	247201663	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	1671400	247201663	2048958	17	23279											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247588229	247588229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NLRP3	NM_183395	exon3	c.A1484G	p.Q495R	GACTGCAGAAGGC	.	40	28	21	0	.	674	G	247588229	A	G	247588229	3	3	186	1	0	0	0	0	1	0	0	0	10478	188	7	2	1494	2	NLRP3	1	247588229	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	386566	247588229	1662392	18	23280											
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978654	247978654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR14A16	NM_001001966	exon1	c.C378A	p.H126Q	CAGAGGGTGACAT	.	60	46	88	0	.	46	T	247978654	G	T	247978654	3	4	186	1	0	0	0	0	1	0	0	0	10945	1252	44	3	555	3	OR14A16	1	247978654	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	390425	247978654	1271967	19	23281											
OR2T8	343172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248085221	248085221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR2T8	NM_001005522	exon1	c.G902T	p.R301M	TGACAAGGTGTAT	.	70	52	86	0	.	68	T	248085221	G	T	248085221	3	4	186	1	0	0	0	0	1	0	0	0	11030	1000	35	3	904	3	OR2T8	1	248085221	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	106567	248085221	1165400	20	23282											
MATN3	4148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20202976	20202976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_002381	exon3	c.C862T	p.H288Y	CACAGTGGTGCTT	.	89	39	68	0	.	.	A	20202976	G	A	20202976	3	1	186	1	0	0	0	0	1	0	0	0	9335	1348	47	3	622	3	MATN3	2	20202976	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		20202976	222996397	21	23283											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29297116	29297116	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C2orf71	NM_001029883	exon1	c.A12G	p.T4T	TGAAGGTGTACAC	.	47	17	52	0	.	91	C	29297116	T	C	29297116	2	2	186	1	0	0	0	0	0	0	0	1	2191	1683	59	2		2	C2orf71	2	29297116	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	9094140	29297116	213902257	22	23284											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44162019	44162019	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRPPRC	NM_133259	exon25	c.2505-2A>T	.	CGCCCCTTAGAAA	.	108	43	144	0	.	93	A	44162019	T	A	44162019	5	1	186	1	0	0	0	0	0	0	1	0	8965	1623	56	4	1741	4	LRPPRC	2	44162019	Splice_Site	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	14864903	44162019	199037354	23	23285											
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	45879477	45879477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRKCE	NM_005400	exon1	c.G238T	p.E80X	AAGATCGAGCTGG	.	30	15	27	0	.	1019	T	45879477	G	T	45879477	4	4	186	1	0	0	0	0	0	1	0	0	12511	1059	37	1	240	1	PRKCE	2	45879477	Nonsense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	1717458	45879477	197319896	24	23286											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013614	99013614	+	Missense_Mutation	SNP	C	C	A	rs183838250		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA3	NM_001298	exon8	c.C1981A	p.R661S	AAGCAGCGTCTCA	.	49	20	48	0	C|0.999;A|0.000	96	A	99013614	C	A	99013614	3	1	186	1	0	0	0	0	1	0	0	0	3598	768	27	1	2007	1	CNGA3	2	99013614	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	53134137	99013614	144185759	25	23287											
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu	37	2	103121886	103121912	+	In_Frame_Del	DEL	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC9A4	NM_001011552	exon4	c.1154_1180del	p.385_394del	GGGCCTTCATCTG	.	41	10	47	0	.	92	-	103121912	TCATCTGCTTCACCCTGGCCTTCTGCC	-	103121886	7	5	186	1	0	1	0	1	0	0	0	0	14716	1783	62	0	1168	0	SLC9A4	2	103121886	In_Frame_Del	DEL	TCATCTGCTTCACCCTGGCCTTCTGCC	TCGA-RC-A6M6-01A-11D-A32G-10	4108272	103121886	140077487	26	23288											
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128038082	128038082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERCC3	NM_000122	exon9	c.G1468T	p.E490X	TGGCTTCGTAGAG	.	114	40	107	0	.	723	A	128038082	C	A	128038082	4	1	186	1	0	0	0	0	0	1	0	0	5214	893	31	1	908	1	ERCC3	2	128038082	Nonsense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	24916196	128038082	115161291	27	23289											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	148674983	148674983	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACVR2A	NM_001616	exon6	c.A804G	p.A268A	CACAGCATTTCAT	.	110	29	127	0	.	831	G	148674983	A	G	148674983	2	3	186	1	0	0	0	0	0	0	0	1	223	204	8	2		2	ACVR2A	2	148674983	Silent	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	20636901	148674983	94524390	28	23290											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	168102891	168102891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.4989delA	p.I1663fs	AGCAATAAAAAAC	.	217	95	208	0	.	104	-	168102891	A	-	168102891	7	5	186	1	0	1	0	1	0	0	0	0	17427	352	13	0	5019	0	XIRP2	2	168102891	Frame_Shift_Del	DEL	A	TCGA-RC-A6M6-01A-11D-A32G-10	19427908	168102891	75096482	29	23291											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	168105997	168105997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.8095delC	p.P2699fs	CACTTGCCCCAAA	.	128	43	137	0	.	104	-	168105997	C	-	168105997	7	5	186	1	0	1	0	1	0	0	0	0	17427	739	26	0	8125	0	XIRP2	2	168105997	Frame_Shift_Del	DEL	C	TCGA-RC-A6M6-01A-11D-A32G-10	3106	168105997	75093376	30	23292											
XIRP2	129446	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	168110643	168110643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_001199143	exon10	c.C1377A	p.C459X	GTCCTGCTTCCGA	.	311	106	290	1	.	104	A	168110643	C	A	168110643	4	1	186	1	0	0	0	0	0	1	0	0	17427	805	28	3	10691	3	XIRP2	2	168110643	Nonsense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	4646	168110643	75088730	31	23293											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179472259	179472259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon277	c.T53156A	p.V17719E	TCTATTACAACAC	.	165	57	152	0	.	636	T	179472259	A	T	179472259	3	4	186	1	0	0	0	0	1	0	0	0	16732	391	14	4	54881	4	TTN	2	179472259	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	11361616	179472259	63727114	32	23294											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179501228	179501228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon225	c.G41226T	p.K13742N	GTGCAGCTTTCTG	.	148	54	146	0	.	636	A	179501228	C	A	179501228	3	1	186	1	0	0	0	0	1	0	0	0	16732	796	28	3	67019	3	TTN	2	179501228	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	28969	179501228	63698145	33	23295											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	196771386	196771387	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH7	NM_018897	exon27	c.4332_4333insT	p.L1444fs	TACCTTCAGGTTA	.	302	106	326	0	.	102	A	196771387	-	A	196771386	7	5	186	1	0	1	1	0	0	0	0	0	4606	813	29	0	7898	0	DNAH7	2	196771386	Frame_Shift_Ins	INS	-	TCGA-RC-A6M6-01A-11D-A32G-10	17270158	196771386	46427987	34	23296											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220326629	220326631	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon7	c.2466_2468del	p.822_823del	CAGCAGCCCCATC	.	65	24	60	0	.	383	-	220326631	CCC	-	220326629	7	5	186	1	0	1	0	1	0	0	0	0	15035	738	26	0	2492	0	SPEG	2	220326629	In_Frame_Del	DEL	CCC	TCGA-RC-A6M6-01A-11D-A32G-10	23555243	220326629	22872744	35	23297											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220348586	220348586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon30	c.G6401T	p.G2134V	CCCAGGGTGAGGC	.	11	5	13	0	.	383	T	220348586	G	T	220348586	3	4	186	1	0	0	0	0	1	0	0	0	15035	1261	44	3	6531	3	SPEG	2	220348586	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	21957	220348586	22850787	36	23298											
SPEG	10290	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220354472	220354472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon36	c.C8732A	p.P2911Q	CACCACCAGCCCC	.	89	38	117	1	.	383	A	220354472	C	A	220354472	3	1	186	1	0	0	0	0	1	0	0	0	15035	594	21	3	8886	3	SPEG	2	220354472	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	5886	220354472	22844901	37	23299											
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220500505	220500505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC4A3	NM_201574	exon14	c.C2164T	p.H722Y	TACCCGCACTACC	.	66	31	63	0	.	157	T	220500505	C	T	220500505	3	4	186	1	0	0	0	0	1	0	0	0	14655	710	25	3	2214	3	SLC4A3	2	220500505	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	146033	220500505	22698868	38	23300											
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237032735	237032735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AGAP1	NM_001037131	exon18	c.A2543G	p.N848S	GGAACAACAGCAG	.	124	26	80	0	.	93	G	237032735	A	G	237032735	3	3	186	1	0	0	0	0	1	0	0	0	366	43	2	2	2613	2	AGAP1	2	237032735	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	16532230	237032735	6166638	39	23301											
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240056268	240056268	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HDAC4	NM_006037	exon10	c.C1050T	p.S350S	GGGCAAGGATGGC	.	71	16	52	0	.	291	A	240056268	G	A	240056268	2	1	186	1	0	0	0	0	0	0	0	1	7009	987	35	3		3	HDAC4	2	240056268	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	3023533	240056268	3143105	40	23302											
PDCD1	5133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242793440	242793440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD1	NM_005018	exon5	c.C637T	p.P213S	CTGAGGGGTCCTC	.	44	20	46	0	.	69	A	242793440	G	A	242793440	3	1	186	1	0	0	0	0	1	0	0	0	11615	1232	43	3	233	3	PDCD1	2	242793440	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	2737172	242793440	405933	41	23303											
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39228092	39228092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP1	NM_001198621	exon2	c.C2845T	p.P949S	CAGCCGGGGGCTC	.	53	38	63	0	.	158	A	39228092	G	A	39228092	3	1	186	1	0	0	0	0	1	0	0	0	17426	1232	43	3	2690	3	XIRP1	3	39228092	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		39228092	158794338	42	23304											
BSN	8927	hgsc.bcm.edu;broad.mit.edu	37	3	49690047	49690048	+	In_Frame_Ins	INS	-	-	AGCAGC	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BSN	NM_003458	exon5	c.3058_3059insAGCAGC	p.K1020delinsKQQ	GAAGCAAAGCAGC	.	46	17	44	0	.	97	AGCAGC	49690048	-	AGCAGC	49690047	7	5	186	1	0	1	1	0	0	0	0	0	1530	15	1	0	3076	0	BSN	3	49690047	In_Frame_Ins	INS	-	TCGA-RC-A6M6-01A-11D-A32G-10	10461955	49690047	148332383	43	23305											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52553354	52553354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAB1	NM_015136	exon49	c.C5109A	p.F1703L	GCACTTCATTGAC	.	74	50	99	0	.	139	A	52553354	C	A	52553354	3	1	186	1	0	0	0	0	1	0	0	0	15236	825	29	3	5303	3	STAB1	3	52553354	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	2863307	52553354	145469076	44	23306											
GPR15	2838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98251158	98251158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR15	NM_005290	exon1	c.C281A	p.A94E	AAGAAGCATCTCT	.	85	32	115	0	.	91	A	98251158	C	A	98251158	3	1	186	1	0	0	0	0	1	0	0	0	6655	710	25	3	283	3	GPR15	3	98251158	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	45697804	98251158	99771272	45	23307											
KIAA1407	57577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113724658	113724658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1407	NM_020817	exon10	c.C1565T	p.T522I	CCCAGGGTCTTGT	.	198	69	210	2	.	92	A	113724658	G	A	113724658	3	1	186	1	0	0	0	0	1	0	0	0	8229	1261	44	3	1277	3	KIAA1407	3	113724658	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	15473500	113724658	84297772	46	23308											
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127379537	127379537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PODXL2	NM_015720	exon3	c.T666A	p.H222Q	CAGGCATGAAGAC	.	85	26	67	0	.	91	A	127379537	T	A	127379537	3	1	186	1	0	0	0	0	1	0	0	0	12181	1461	51	4	676	4	PODXL2	3	127379537	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	13654879	127379537	70642893	47	23309											
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164908256	164908256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLITRK3	NM_014926	exon2	c.C363T	p.F121F	ACCATTGAAAGCT	.	80	34	80	0	.	100	A	164908256	G	A	164908256	2	1	186	1	0	0	0	0	0	0	0	1	14744	1281	45	3		3	SLITRK3	3	164908256	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	37528719	164908256	33114174	48	23310											
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185318578	185318578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SENP2	NM_021627	exon5	c.384delT	p.S128fs	AATAAGTGACTAT	.	155	56	137	0	.	658	-	185318578	T	-	185318578	7	5	186	1	0	1	0	1	0	0	0	0	14047	1693	59	0	402	0	SENP2	3	185318578	Frame_Shift_Del	DEL	T	TCGA-RC-A6M6-01A-11D-A32G-10	20410322	185318578	12703852	49	23311											
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195610026	195610026	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNK2	NM_005781	exon6	c.609+2T>A	.	GTACTCACCATCT	.	12	6	23	0	.	957	T	195610026	A	T	195610026	5	4	186	1	0	0	0	0	0	0	1	0	16315	173	6	4	2598	4	TNK2	3	195610026	Splice_Site	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	10291448	195610026	2412404	50	23312											
FBXL5	26234	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15613952	15613952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FBXL5	NM_012161	exon10	c.G1936T	p.D646Y	CCAAATCCTGCAG	.	204	88	230	1	.	226	A	15613952	C	A	15613952	3	1	186	1	0	0	0	0	1	0	0	0	5722	855	30	3	147	3	FBXL5	4	15613952	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10		15613952	175540324	51	23313											
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40892391	40892391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APBB2	NM_004307	exon12	c.G1519A	p.D507N	CATTGTCGCGGCC	.	57	24	64	0	.	92	T	40892391	C	T	40892391	3	4	186	1	0	0	0	0	1	0	0	0	761	884	31	1	788	1	APBB2	4	40892391	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	25278439	40892391	150261885	52	23314											
SHISA3	152573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42400220	42400220	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SHISA3	NM_001080505	exon1	c.C147T	p.D49D	CTTCGACACGCTG	.	75	21	53	0	.	70	T	42400220	C	T	42400220	2	4	186	1	0	0	0	0	0	0	0	1	14281	477	17	3		3	SHISA3	4	42400220	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	1507829	42400220	148754056	53	23315											
PDGFRA	5156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55133851	55133851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDGFRA	NM_006206	exon7	c.C1064T	p.T355I	ATCTGACTCTGAT	.	136	58	163	2	.	9497	T	55133851	C	T	55133851	3	4	186	1	0	0	0	0	1	0	0	0	11661	565	20	3	1086	3	PDGFRA	4	55133851	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	12733631	55133851	136020425	54	23316											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123302161	123302161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ADAD1	NM_139243	exon4	c.C187A	p.P63T	CCAGAGCCGTTGC	.	357	96	289	0	.	90	A	123302161	C	A	123302161	3	1	186	1	0	0	0	0	1	0	0	0	231	739	26	3	193	3	ADAD1	4	123302161	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	68168310	123302161	67852115	55	23317											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126367528	126367528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAT4	NM_024582	exon8	c.G7274A	p.R2425K	TAGATAGGGAAAC	.	69	30	92	0	.	108	A	126367528	G	A	126367528	3	1	186	1	0	0	0	0	1	0	0	0	5692	1000	35	3	7304	3	FAT4	4	126367528	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	3065367	126367528	64786748	56	23318											
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	146032129	146032129	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCE1	NM_002940	exon8	c.623delA	p.H208fs	TAACCCACCTAAA	.	122	47	115	0	.	91	-	146032129	A	-	146032129	7	5	186	1	0	1	0	1	0	0	0	0	64	159	6	0	649	0	ABCE1	4	146032129	Frame_Shift_Del	DEL	A	TCGA-RC-A6M6-01A-11D-A32G-10	19664601	146032129	45122147	57	23319											
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164394657	164394657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TKTL2	NM_032136	exon1	c.G230A	p.G77E	GCATGTCCCCTGG	.	129	47	148	0	.	95	T	164394657	C	T	164394657	3	4	186	1	0	0	0	0	1	0	0	0	15933	855	30	3	1654	3	TKTL2	4	164394657	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	18362528	164394657	26759619	58	23320											
PALLD	23022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169825044	169825044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PALLD	NM_001166108	exon15	c.C2609A	p.A870D	TTATGGCTGCAAA	.	81	38	88	0	.	94	A	169825044	C	A	169825044	3	1	186	1	0	0	0	0	1	0	0	0	11407	797	28	3	3170	3	PALLD	4	169825044	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	5430387	169825044	21329232	59	23321											
AADAT	51166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170991792	170991792	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AADAT	NM_182662	exon7	c.A666G	p.K222K	ATCATATTTTCTT	.	157	69	173	0	.	90	C	170991792	T	C	170991792	2	2	186	1	0	0	0	0	0	0	0	1	14	1490	52	2		2	AADAT	4	170991792	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	1166748	170991792	20162484	60	23322											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1422073	1422073	+	Missense_Mutation	SNP	C	C	T	rs6345	bycluster;by1000genomes	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A3	NM_001044	exon5	c.G710A	p.R237Q	TGCCACCGCGGAG	.	42	19	40	0	C|0.001;G|0.998	157	T	1422073	C	T	1422073	3	4	186	1	0	0	0	0	1	0	0	0	14685	652	23	1	1196	1	SLC6A3	5	1422073	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10		1422073	179493187	61	23323			1	19		2	2	14	N	G_C	8.608436e-05
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1422086	1422086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A3	NM_001044	exon5	c.C697A	p.L233M	GCCCCAGGTCGTC	.	40	15	38	0	.	157	T	1422086	G	T	1422086	3	4	186	1	0	0	0	0	1	0	0	0	14685	991	35	3	1209	3	SLC6A3	5	1422086	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	13	1422086	179493174	62	23324			1	19		2	2	14	N	G_C	8.608436e-05
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	3596419	3596419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IRX1	NM_024337	exon1	c.200delC	p.A67fs	CGGCGGCGGGGCC	.	38	13	28	0	.	228	-	3596419	C	-	3596419	7	5	186	1	0	1	0	1	0	0	0	0	7843	768	27	0	202	0	IRX1	5	3596419	Frame_Shift_Del	DEL	C	TCGA-RC-A6M6-01A-11D-A32G-10	2174333	3596419	177318841	63	23325											
CAST	831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96083056	96083056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CAST	NM_001042440	exon16	c.A1169G	p.D390G	ATAAAGATGGAAA	.	279	77	319	0	.	517	G	96083056	A	G	96083056	3	3	186	1	0	0	0	0	1	0	0	0	2684	333	12	2	1486	2	CAST	5	96083056	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	92486637	96083056	84832204	64	23326											
RGMB	285704	hgsc.bcm.edu;broad.mit.edu	37	5	98109681	98109682	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001012761	exon3	c.30_31insC	p.A10fs	AAGCGCGCCCCCC	.	28	14	9	0	.	.	C	98109682	-	C	98109681	7	5	186	1	0	1	1	0	0	0	0	0	13281	1074	38	0	36	0	RGMB	5	98109681	Frame_Shift_Ins	INS	-	TCGA-RC-A6M6-01A-11D-A32G-10	2026625	98109681	82805579	65	23327											
FTMT	94033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121188325	121188325	+	Missense_Mutation	SNP	G	G	A	rs149286328	byfrequency;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FTMT	NM_177478	exon1	c.G667A	p.A223T	CCGGATGCTGGCC	.	76	24	57	0	G|0.999;T|0.001	91	A	121188325	G	A	121188325	3	1	186	1	0	0	0	0	1	0	0	0	6085	1319	46	3	669	3	FTMT	5	121188325	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	23078644	121188325	59726935	66	23328											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131007517	131007517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FNIP1	NM_133372	exon14	c.T2620A	p.C874S	TTGTACACAATAT	.	135	58	110	0	.	92	T	131007517	A	T	131007517	3	4	186	1	0	0	0	0	1	0	0	0	5975	159	6	4	900	4	FNIP1	5	131007517	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	9819192	131007517	49907743	67	23329											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222105	140222105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHA8	NM_031856	exon1	c.C1199T	p.T400I	TGTCCACCTTCAA	.	184	68	192	0	.	92	T	140222105	C	T	140222105	3	4	186	1	0	0	0	0	1	0	0	0	11530	507	18	3	1201	3	PCDHA8	5	140222105	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	9214588	140222105	40693155	68	23330											
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558291	140558291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHB8	NM_019120	exon1	c.A676T	p.T226S	TCTGGCACTGCTC	.	301	77	340	0	.	131	T	140558291	A	T	140558291	3	4	186	1	0	0	0	0	1	0	0	0	11548	159	6	4	678	4	PCDHB8	5	140558291	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	336186	140558291	40356969	69	23331											
IL12B	3593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158753702	158753702	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IL12B	NM_002187	exon3	c.88+1G>A	.	TGGTTACCATCTT	.	111	31	69	1	.	90	T	158753702	C	T	158753702	5	4	186	1	0	0	0	0	0	0	1	0	7625	521	18	3	921	3	IL12B	5	158753702	Splice_Site	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	18195411	158753702	22161558	70	23332											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169111319	169111319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DOCK2	NM_004946	exon8	c.G726C	p.M242I	CTTCATGTCTCTC	.	147	44	96	0	.	97	C	169111319	G	C	169111319	3	2	186	1	0	0	0	0	1	0	0	0	4687	1377	48	4	756	4	DOCK2	5	169111319	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	10357617	169111319	11803941	71	23333											
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070686	176070686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001099408	exon5	c.G247T	p.D83Y	TGGCAGGACAACC	.	90	25	75	0	.	.	T	176070686	G	T	176070686	3	4	186	1	0	0	0	0	1	0	0	0	5029	1174	41	3	257	3	EIF4E1B	5	176070686	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	6959367	176070686	4844574	72	23334											
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176893949	176893949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DBN1	NM_080881	exon8	c.C676T	p.R226C	GGTAGCGCCGCTC	.	31	14	39	0	.	587	A	176893949	G	A	176893949	3	1	186	1	0	0	0	0	1	0	0	0	4252	1087	38	1	1311	1	DBN1	5	176893949	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	823263	176893949	4021311	73	23335											
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29323327	29323327	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5V1	NM_030876	exon1	c.C646G	p.L216V	AGGAAAGTACGAT	.	34	10	38	0	.	72	C	29323327	G	C	29323327	3	2	186	1	0	0	0	0	1	0	0	0	11184	1029	36	4	322	4	OR5V1	6	29323327	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		29323327	141791740	74	23336											
UBD	10537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29524084	29524084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	UBD	NM_006398	exon2	c.C71G	p.A24G	GGGTTGGCATCAA	.	69	23	86	0	.	90	C	29524084	G	C	29524084	3	2	186	1	0	0	0	0	1	0	0	0	16840	1203	42	4	430	4	UBD	6	29524084	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	200757	29524084	141590983	75	23337											
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30298592	30298593	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRIM39	NM_172016	exon4	c.488_489del	p.163_163del	TGGAACAGAAGCT	.	70	21	72	0	.	161	-	30298593	AG	-	30298592	7	5	186	1	0	1	0	1	0	0	0	0	16510	188	7	0	494	0	TRIM39	6	30298592	Frame_Shift_Del	DEL	AG	TCGA-RC-A6M6-01A-11D-A32G-10	774508	30298592	140816475	76	23338											
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32918508	32918508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HLA-DMA	NM_006120	exon2	c.G161A	p.S54N	CTGGGACTCCCAT	.	46	13	45	0	.	90	T	32918508	C	T	32918508	3	4	186	1	0	0	0	0	1	0	0	0	7198	565	20	3	640	3	HLA-DMA	6	32918508	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	2619916	32918508	138196559	77	23339											
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35285774	35285774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEF6	NM_022047	exon6	c.C914T	p.A305V	GGACAGCTGGTGA	.	56	20	72	0	.	227	T	35285774	C	T	35285774	3	4	186	1	0	0	0	0	1	0	0	0	4386	797	28	3	936	3	DEF6	6	35285774	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	2367266	35285774	135829293	78	23340											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40360374	40360374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRFN2	NM_020737	exon3	c.T1678A	p.C560S	GGTTGCAGACCTT	.	51	21	52	0	.	93	T	40360374	A	T	40360374	3	4	186	1	0	0	0	0	1	0	0	0	8938	188	7	4	695	4	LRFN2	6	40360374	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	5074600	40360374	130754693	79	23341											
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41658400	41658400	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TFEB	NM_007162	exon5	c.468+1G>A	.	CACTCACCTCCCT	.	19	8	27	0	.	659	T	41658400	C	T	41658400	5	4	186	1	0	0	0	0	0	0	1	0	15798	521	18	3	989	3	TFEB	6	41658400	Splice_Site	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	1298026	41658400	129456667	80	23342											
PGC	5225	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	41712472	41712472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PGC	NM_002630	exon2	c.C134T	p.T45I	TTGTGGGTCCTCA	.	50	14	58	1	.	90	A	41712472	G	A	41712472	3	1	186	1	0	0	0	0	1	0	0	0	11785	1261	44	3	1373	3	PGC	6	41712472	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	54072	41712472	129402595	81	23343											
TCTE1	202500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44254246	44254246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TCTE1	NM_182539	exon3	c.C301G	p.L101V	CCGGGAGCATCTG	.	73	17	87	0	.	94	C	44254246	G	C	44254246	3	2	186	1	0	0	0	0	1	0	0	0	15714	971	34	4	1216	4	TCTE1	6	44254246	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	2541774	44254246	126860821	82	23344											
DEFB114	245928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49928115	49928115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEFB114	NM_001037499	exon2	c.G100C	p.G34R	AACGACCGTAACG	.	121	54	126	0	.	91	G	49928115	C	G	49928115	3	3	186	1	0	0	0	0	1	0	0	0	4403	652	23	4	112	4	DEFB114	6	49928115	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	5673869	49928115	121186952	83	23345											
DAGLB	221955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6474591	6474591	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DAGLB	NM_139179	exon4	c.G480A	p.G160G	CATTTTCCCCCCA	.	72	28	61	0	.	70	T	6474591	C	T	6474591	2	4	186	1	0	0	0	0	0	0	0	1	4227	842	30	3		3	DAGLB	7	6474591	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10		6474591	152664072	84	23346											
AVL9	23080	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	32623585	32623585	+	RNA	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AVL9	.	.	.	.	GCTCCCAGGCTGT	.	145	60	180	0	.	90	T	32623585	A	T	32623585	1	4	186	0	1	0	0	0	0	0	0	0	1228	203	7	4		4	AVL9	7	32623585	RNA	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	26148994	32623585	126515078	85	23347											
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	64166839	64166839	+	Nonsense_Mutation	SNP	G	G	T	rs201422104	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF107	NM_016220	exon7	c.G157T	p.E53X	GTGGATGAGTGTA	.	208	67	176	0	.	69	T	64166839	G	T	64166839	4	4	186	1	0	0	0	0	0	1	0	0	17712	1291	45	3	163	3	ZNF107	7	64166839	Nonsense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	31543254	64166839	94971824	86	23348											
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76889445	76889445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCDC146	NM_020879	exon8	c.A878T	p.E293V	TAAAGGAAGTTGA	.	178	31	146	0	.	70	T	76889445	A	T	76889445	3	4	186	1	0	0	0	0	1	0	0	0	2780	246	9	4	904	4	CCDC146	7	76889445	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	12722606	76889445	82249218	87	23349											
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83014738	83014738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA3E	NM_012431	exon16	c.G1747T	p.D583Y	TCTTATCCAAAGC	.	255	63	213	0	.	93	A	83014738	C	A	83014738	3	1	186	1	0	0	0	0	1	0	0	0	14028	855	30	3	588	3	SEMA3E	7	83014738	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	6125293	83014738	76123925	88	23350											
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92015870	92015870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKIB1	NM_019004	exon12	c.T1665G	p.H555Q	AAAACATAGTTCG	.	278	51	196	0	.	432	G	92015870	T	G	92015870	3	3	186	1	0	0	0	0	1	0	0	0	630	1403	49	5	1707	5	ANKIB1	7	92015870	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	9001132	92015870	67122793	89	23351											
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99434099	99434099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon2	c.T95G	p.L32R	ATAAACTTTTTAA	.	262	124	151	0	.	92	G	99434099	T	G	99434099	3	3	186	1	0	0	0	0	1	0	0	0	4179	1609	56	5	101	5	CYP3A43	7	99434099	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	7418229	99434099	59704564	90	23352											
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99447235	99447235	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon7	c.C588T	p.L196L	TTCTCTCAACAAT	.	246	145	173	0	.	92	T	99447235	C	T	99447235	2	4	186	1	0	0	0	0	0	0	0	1	4179	813	29	3		3	CYP3A43	7	99447235	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	13136	99447235	59691428	91	23353											
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	99999574	99999574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZCWPW1	NM_017984	exon17	c.C1562G	p.A521G	GGAGGAGCTGTGG	.	268	17	142	0	.	90	C	99999574	G	C	99999574	3	2	186	1	0	0	0	0	1	0	0	0	17594	971	34	4	392	4	ZCWPW1	7	99999574	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	552339	99999574	59139089	92	23354											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100682876	100682876	+	Missense_Mutation	SNP	G	G	A	rs143199514		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.G8179A	p.A2727T	ACTTCTGCTGAAG	.	78	9	55	0	G|1.000;A|0.000	95	A	100682876	G	A	100682876	3	1	186	1	0	0	0	0	1	0	0	0	9974	1319	46	3	8189	3	MUC17	7	100682876	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	683302	100682876	58455787	93	23355			2	20		2	2	15	N	T_G	9.270593e-05
MUC17	140453	hgsc.bcm.edu;bcgsc.ca	37	7	100682890	100682890	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.T8193C	p.S2731S	CAGTTCTTCTCCT	.	75	5	58	0	.	95	C	100682890	T	C	100682890	2	2	186	1	0	0	0	0	0	0	0	1	9974	1596	56	2		2	MUC17	7	100682890	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	14	100682890	58455773	94	23356			2	20		2	2	15	N	T_G	9.270593e-05
PLOD3	8985	bcgsc.ca;mdanderson.org	37	7	100855190	100855190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PLOD3	NM_001084	exon11	c.G1169T	p.S390I	TCCAGGCTGAAGT	.	59	43	33	1	.	92	A	100855190	C	A	100855190	3	1	186	1	0	0	0	0	1	0	0	0	12103	797	28	3	1083	3	PLOD3	7	100855190	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	172300	100855190	58283473	95	23357											
RAB19	401409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140111745	140111745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RAB19	NM_001008749	exon3	c.C273G	p.H91Q	TGCCCACGCAGCC	.	46	21	39	0	.	22	G	140111745	C	G	140111745	3	3	186	1	0	0	0	0	1	0	0	0	12904	535	19	4	279	4	RAB19	7	140111745	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	39256555	140111745	19026918	96	23358											
ZNF862	643641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149558298	149558298	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF862	NM_001099220	exon7	c.C2049A	p.I683I	GGACATCCCCTTC	.	74	19	77	1	.	69	A	149558298	C	A	149558298	2	1	186	1	0	0	0	0	0	0	0	1	18192	845	30	3		3	ZNF862	7	149558298	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	9446553	149558298	9580365	97	23359											
GIMAP4	55303	hgsc.bcm.edu;bcgsc.ca	37	7	150269571	150269571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GIMAP4	NM_018326	exon3	c.T413A	p.L138Q	AGATCCTGAAAAT	.	66	18	91	0	.	91	A	150269571	T	A	150269571	3	1	186	1	0	0	0	0	1	0	0	0	6381	1580	55	4	419	4	GIMAP4	7	150269571	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	711273	150269571	8869092	98	23360											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu	37	7	151927092	151927092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MLL3	NM_170606	exon18	c.2892delC	p.G964fs	AAAACTGCCACAA	.	575	44	738	0	.	1398	-	151927092	G	-	151927092	7	5	186	1	0	1	0	1	0	0	0	0	9622	1306	46	0	12011	0	MLL3	7	151927092	Frame_Shift_Del	DEL	G	TCGA-RC-A6M6-01A-11D-A32G-10	1657521	151927092	7211571	99	23361											
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156619307	156619308	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LMBR1	NM_022458	exon4	c.311_312insC	p.L104fs	TGAATCAGGGAGC	.	41	29	60	0	.	90	G	156619308	-	G	156619307	7	5	186	1	0	1	1	0	0	0	0	0	8840	188	7	0	1217	0	LMBR1	7	156619307	Frame_Shift_Ins	INS	-	TCGA-RC-A6M6-01A-11D-A32G-10	4692215	156619307	2519356	100	23362											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41574509	41574514	+	In_Frame_Del	DEL	AATATT	AATATT	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AATATT	AATATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANK1	NM_001142446	exon13	c.1460_1465del	p.487_489del	GGAGTAAATATTT	.	225	49	240	0	.	716	-	41574514	AATATT	-	41574509	7	5	186	1	0	1	0	1	0	0	0	0	620	11	1	0	4753	0	ANK1	8	41574509	In_Frame_Del	DEL	AATATT	TCGA-RC-A6M6-01A-11D-A32G-10		41574509	104789513	101	23363											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56436755	56436757	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XKR4	NM_052898	exon3	c.1922_1924del	p.641_642del	TTATTCAGGAGCG	.	41	11	33	0	.	92	-	56436757	AGG	-	56436755	7	5	186	1	0	1	0	1	0	0	0	0	17430	188	7	0	1932	0	XKR4	8	56436755	In_Frame_Del	DEL	AGG	TCGA-RC-A6M6-01A-11D-A32G-10	14862246	56436755	89927267	102	23364											
EXT1	2131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118817113	118817113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EXT1	NM_000127	exon10	c.T1903G	p.S635A	AATGGGAGTATAG	.	177	74	101	0	.	660	C	118817113	A	C	118817113	3	2	186	1	0	0	0	0	1	0	0	0	5323	304	11	5	345	5	EXT1	8	118817113	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	62380358	118817113	27546909	103	23365											
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119936632	119936632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNFRSF11B	NM_002546	exon5	c.T1187G	p.V396G	ATTTTTACTGATT	.	151	55	111	0	.	651	C	119936632	A	C	119936632	3	2	186	1	0	0	0	0	1	0	0	0	16282	391	14	5	22	5	TNFRSF11B	8	119936632	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	1119519	119936632	26427390	104	23366											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133935646	133935646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TG	NM_003235	exon22	c.C4592G	p.A1531G	ATCGAGCCAGCCA	.	101	51	65	0	.	145	G	133935646	C	G	133935646	3	3	186	1	0	0	0	0	1	0	0	0	15810	739	26	4	4678	4	TG	8	133935646	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	13999014	133935646	12428376	105	23367											
COL22A1	169044	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139620230	139620230	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	COL22A1	NM_152888	exon57	c.C3981A	p.G1327G	ATTCTTGCCCTGG	.	68	29	54	1	.	103	T	139620230	G	T	139620230	2	4	186	1	0	0	0	0	0	0	0	1	3681	1306	46	3		3	COL22A1	8	139620230	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	5684584	139620230	6743792	106	23368											
ZNF250	58500	broad.mit.edu;bcgsc.ca	37	8	146108000	146108000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_021061	exon6	c.G583A	p.G195R	TCTCTCCACTAGG	.	538	40	146	1	.	.	T	146108000	C	T	146108000	3	4	186	1	0	0	0	0	1	0	0	0	17792	603	21	3	1103	3	ZNF250	8	146108000	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	6487770	146108000	256022	107	23369											
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27949553	27949554	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.L373M	ACTGCAGGGTGGG	.	33	22	51	0	.	.	TT	27949554	GG	TT	27949553	3	4	186	1	0	0	0	0	1	0	0	0	8815	991	35	3	707	3	LINGO2	9	27949553	Missense_Mutation	DNP	GG	TCGA-RC-A6M6-01A-11D-A32G-10		27949553	113263878	108	23370											
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35094331	35094331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGO	NM_001201484	exon4	c.T537G	p.D179E	GGTATCATCTCCC	.	43	23	42	0	.	290	C	35094331	A	C	35094331	3	2	186	1	0	0	0	0	1	0	0	0	11894	214	8	5	2768	5	PIGO	9	35094331	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	7144778	35094331	106119100	109	23371											
ANKS6	203286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	101498813	101498813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKS6	NM_173551	exon15	c.C2604G	p.S868R	ACAGGGGCTGTTG	.	38	13	38	0	.	92	C	101498813	G	C	101498813	3	2	186	1	0	0	0	0	1	0	0	0	692	1194	42	4	15	4	ANKS6	9	101498813	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	66404482	101498813	39714618	110	23372											
TRUB2	26995	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131072114	131072114	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRUB2	NM_015679	exon8	c.G711A	p.K237K	AACCAACTTCCGC	.	80	17	108	1	.	91	T	131072114	C	T	131072114	2	4	186	1	0	0	0	0	0	0	0	1	16600	564	20	3		3	TRUB2	9	131072114	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	29573301	131072114	10141317	111	23373											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131369944	131369944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPTAN1	NM_003127	exon32	c.G4108T	p.D1370Y	GCCAAGGATGTCA	.	56	15	98	0	.	158	T	131369944	G	T	131369944	3	4	186	1	0	0	0	0	1	0	0	0	15116	1174	41	3	4230	3	SPTAN1	9	131369944	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	297830	131369944	9843487	112	23374											
TUBB8	347688	broad.mit.edu;mdanderson.org	37	10	94664	94664	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBB8	NM_177987	exon3	c.T168A	p.G56G	CCTGCCACCTGCG	.	38	8	34	1	.	69	T	94664	A	T	94664	2	4	186	1	0	0	0	0	0	0	0	1	16758	173	6	4		4	TUBB8	10	94664	Silent	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10		94664	135440083	113	23375											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15688879	15688879	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ITGA8	NM_003638	exon12	c.A1173C	p.A391A	TAAGTGTGCCATA	.	79	26	80	0	.	230	G	15688879	T	G	15688879	2	3	186	1	0	0	0	0	0	0	0	1	7882	1683	59	5		5	ITGA8	10	15688879	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	15594215	15688879	119845868	114	23376											
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103917282	103917282	+	Missense_Mutation	SNP	T	T	G	rs139625185	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NOLC1	NM_004741	exon4	c.T411G	p.D137E	TGATGATGAGGAG	.	50	21	54	0	T|0.999;G|0.001	91	G	103917282	T	G	103917282	3	3	186	1	0	0	0	0	1	0	0	0	10529	1461	51	5	425	5	NOLC1	10	103917282	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	88228403	103917282	31617465	115	23377											
PDCD11	22984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105173039	105173039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD11	NM_014976	exon9	c.C1145A	p.A382D	CTGGGGCCACCTT	.	118	33	118	1	.	275	A	105173039	C	A	105173039	3	1	186	1	0	0	0	0	1	0	0	0	11617	739	26	3	1175	3	PDCD11	10	105173039	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	1255757	105173039	30361708	116	23378											
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118360697	118360697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PNLIPRP1	NM_006229	exon10	c.G1047T	p.E349D	AGGAGAGGCTAGC	.	57	22	55	0	.	154	T	118360697	G	T	118360697	3	4	186	1	0	0	0	0	1	0	0	0	12150	991	35	3	1081	3	PNLIPRP1	10	118360697	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	13187658	118360697	17174050	117	23379											
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123274695	123274695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FGFR2	NM_022970	exon9	c.A1226G	p.D409G	CTGAAGTCTGGCT	.	158	31	172	0	.	2607	C	123274695	T	C	123274695	3	2	186	1	0	0	0	0	1	0	0	0	5866	1667	58	2	1386	2	FGFR2	10	123274695	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	4913998	123274695	12260052	118	23380											
BNIP3	664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133787338	133787338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BNIP3	NM_004052	exon2	c.T156A	p.H52Q	AGACTCATGCTGT	.	40	9	61	0	.	227	T	133787338	A	T	133787338	3	4	186	1	0	0	0	0	1	0	0	0	1478	214	8	4	448	4	BNIP3	10	133787338	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	10512643	133787338	1747409	119	23381											
OR51M1	390059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5410935	5410935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR51M1	NM_001004756	exon1	c.A307T	p.S103C	TCCCATAGTATCT	.	66	30	104	0	.	68	T	5410935	A	T	5410935	3	4	186	1	0	0	0	0	1	0	0	0	11103	420	15	4	309	4	OR51M1	11	5410935	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10		5410935	129595581	120	23382											
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6261787	6261787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA4	NM_001037329	exon4	c.G763A	p.V255I	CTGGCCGTCATGG	.	76	24	60	0	.	91	A	6261787	G	A	6261787	3	1	186	1	0	0	0	0	1	0	0	0	3599	1145	40	1	777	1	CNGA4	11	6261787	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	850852	6261787	128744729	121	23383											
RASSF10	644943	hgsc.bcm.edu;bcgsc.ca	37	11	13031752	13031752	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001080521	exon1	c.629delG	p.C210fs	CGTCCTGCTCTTC	.	90	28	68	0	.	.	-	13031752	G	-	13031752	7	5	186	1	0	1	0	1	0	0	0	0	13085	1319	46	0	959	0	RASSF10	11	13031752	Frame_Shift_Del	DEL	G	TCGA-RC-A6M6-01A-11D-A32G-10	6769965	13031752	121974764	122	23384											
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17544442	17544442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	USH1C	NM_153676	exon12	c.G908T	p.R303L	GCCAGCCGCTCCC	.	69	28	61	0	.	91	A	17544442	C	A	17544442	3	1	186	1	0	0	0	0	1	0	0	0	17031	652	23	1	1933	1	USH1C	11	17544442	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	4512690	17544442	117462074	123	23385											
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414292	32414292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WT1	NM_024424	exon8	c.C1259G	p.P420R	TGGTATGGTTTCT	.	81	28	90	0	.	6891	C	32414292	G	C	32414292	3	2	186	1	0	0	0	0	1	0	0	0	17405	1348	47	4	306	4	WT1	11	32414292	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	14869850	32414292	102592224	124	23386											
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579638	55579638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5L1	NM_001004738	exon1	c.G696T	p.E232D	TGCAGAGGGCAGG	.	85	34	96	1	.	73	T	55579638	G	T	55579638	3	4	186	1	0	0	0	0	1	0	0	0	11170	991	35	3	698	3	OR5L1	11	55579638	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	23165346	55579638	79426878	125	23387											
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56000068	56000068	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5T2	NM_001004746	exon1	c.T594C	p.H198H	CACTGTATGTATA	.	133	58	139	0	.	70	G	56000068	A	G	56000068	2	3	186	1	0	0	0	0	0	0	0	1	11182	446	16	2		2	OR5T2	11	56000068	Silent	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	420430	56000068	79006448	126	23388											
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59861471	59861472	+	Missense_Mutation	DNP	TG	TG	AT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.L191H	CCATTCTGGGACT	.	91	39	112	0	.	.	AT	59861472	TG	AT	59861471	3	1	186	1	0	0	0	0	1	0	0	0	9860	1580	55	4	645	4	MS4A2	11	59861471	Missense_Mutation	DNP	TG	TCGA-RC-A6M6-01A-11D-A32G-10	3861403	59861471	75145045	127	23389	149	2									
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59861474	59861474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MS4A2	NM_000139	exon6	c.G575T	p.G192V	TTCTGGGACTTGG	.	89	38	113	0	.	91	T	59861474	G	T	59861474	3	4	186	1	0	0	0	0	1	0	0	0	9860	1174	41	3	648	3	MS4A2	11	59861474	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	3	59861474	75145042	128	23390	149	2									
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76925722	76925722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYO7A	NM_000260	exon49	c.G6629T	p.G2210V	AGCGGGGCTCCAG	.	60	26	66	0	.	138	T	76925722	G	T	76925722	3	4	186	1	0	0	0	0	1	0	0	0	10082	1203	42	3	6853	3	MYO7A	11	76925722	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	17064248	76925722	58080794	129	23391											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82895887	82895887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCF11	NM_015885	exon16	c.C4619T	p.A1540V	GCATAGCAACACC	.	70	24	65	0	.	23	T	82895887	C	T	82895887	3	4	186	1	0	0	0	0	1	0	0	0	11573	710	25	3	4681	3	PCF11	11	82895887	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	5970165	82895887	52110629	130	23392											
B3GAT1	27087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134252717	134252717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	B3GAT1	NM_054025	exon4	c.A805C	p.S269R	CCTGGCTTCGCTG	.	76	34	76	0	.	91	G	134252717	T	G	134252717	3	3	186	1	0	0	0	0	1	0	0	0	1253	1609	56	5	207	5	B3GAT1	11	134252717	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	51356830	134252717	753799	131	23393											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	335639	335639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A13	NM_016615	exon9	c.T977G	p.F326C	GCCACAAAGCTGG	.	31	11	47	0	.	90	C	335639	A	C	335639	3	2	186	1	0	0	0	0	1	0	0	0	14676	14	1	5	859	5	SLC6A13	12	335639	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10		335639	133516256	132	23394											
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	13366481	13366481	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EMP1	NM_001423	exon3	c.C147A	p.C49X	TAGCTGCAGTGAC	.	254	69	294	0	.	90	A	13366481	C	A	13366481	4	1	186	1	0	0	0	0	0	1	0	0	5101	718	25	3	153	3	EMP1	12	13366481	Nonsense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	13030842	13366481	120485414	133	23395											
PYROXD1	79912	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21609022	21609022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PYROXD1	NM_024854	exon7	c.C743A	p.T248K	AAGGAACAAAAGA	.	111	39	157	1	.	23	A	21609022	C	A	21609022	3	1	186	1	0	0	0	0	1	0	0	0	12866	478	17	3	769	3	PYROXD1	12	21609022	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	8242541	21609022	112242873	134	23396											
IRAK4	51135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	44165082	44165083	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.W74F	TTGACTGGGGCAC	.	114	47	143	0	.	.	TT	44165083	GG	TT	44165082	3	4	186	1	0	0	0	0	1	0	0	0	7825	1357	47	3	227	3	IRAK4	12	44165082	Missense_Mutation	DNP	GG	TCGA-RC-A6M6-01A-11D-A32G-10	22556060	44165082	89686813	135	23397											
STAC3	246329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57640644	57640644	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAC3	NM_145064	exon6	c.C546T	p.R182R	CCCAGTGCGCAGG	.	125	40	122	0	.	93	A	57640644	G	A	57640644	2	1	186	1	0	0	0	0	0	0	0	1	15240	1306	46	3		3	STAC3	12	57640644	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	13475562	57640644	76211251	136	23398											
PTPRR	5801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71054875	71054875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTPRR	NM_002849	exon12	c.A1611C	p.Q537H	GCTTCCTTGCTGA	.	62	20	84	0	.	652	G	71054875	T	G	71054875	3	3	186	1	0	0	0	0	1	0	0	0	12810	1606	56	5	374	5	PTPRR	12	71054875	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	13414231	71054875	62797020	137	23399											
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99640465	99640465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_152788	exon13	c.C1934G	p.P645R	GGCAAAGGACTGT	.	180	73	206	0	.	.	C	99640465	G	C	99640465	3	2	186	1	0	0	0	0	1	0	0	0	689	1000	35	4	2156	4	ANKS1B	12	99640465	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	28585590	99640465	34211430	138	23400											
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	106532400	106532400	+	Missense_Mutation	SNP	T	T	G	rs201298691	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.A32C	p.D11A	GGGCGGTCCCCCG	.	24	15	26	0	.	359	G	106532400	T	G	106532400	3	3	186	1	0	0	0	0	1	0	0	0	10712	1667	58	5	1981	5	NUAK1	12	106532400	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	6891935	106532400	27319495	139	23401	150	2									
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	106532406	106532406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.C26A	p.A9E	TCCCCCGCCACAG	.	25	17	23	0	.	359	T	106532406	G	T	106532406	3	4	186	1	0	0	0	0	1	0	0	0	10712	1087	38	1	1987	1	NUAK1	12	106532406	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	6	106532406	27319489	140	23402	150	2									
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130929724	130929724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIMBP2	NM_015347	exon7	c.T621A	p.D207E	ATCCTCATCCATG	.	33	25	63	0	.	142	T	130929724	A	T	130929724	3	4	186	1	0	0	0	0	1	0	0	0	13363	214	8	4	2589	4	RIMBP2	12	130929724	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	24397318	130929724	2922171	141	23403											
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20657109	20657109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM2	NM_001190964	exon24	c.A3757G	p.T1253A	CCTTTAACGATGG	.	229	100	249	0	.	685	G	20657109	A	G	20657109	3	3	186	1	0	0	0	0	1	0	0	0	17697	43	2	2	3839	2	ZMYM2	13	20657109	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10		20657109	94512769	142	23404											
ATP8A2	51761	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	26043153	26043153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP8A2	NM_016529	exon2	c.G115T	p.D39Y	GCAGAGGATGAGA	.	66	20	51	1	.	138	T	26043153	G	T	26043153	3	4	186	1	0	0	0	0	1	0	0	0	1193	1174	41	3	121	3	ATP8A2	13	26043153	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	5386044	26043153	89126725	143	23405											
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37679220	37679220	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSNK1A1L	NM_145203	exon1	c.G174C	p.L58L	CTCATACAGCAAC	.	48	18	54	0	.	396	G	37679220	C	G	37679220	2	3	186	1	0	0	0	0	0	0	0	1	3951	465	17	4		4	CSNK1A1L	13	37679220	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	11636067	37679220	77490658	144	23406											
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78477336	78477336	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EDNRB	NM_001201397	exon4	c.G1026C	p.L342L	GATTCGCAGATAA	.	87	26	130	0	.	522	G	78477336	C	G	78477336	2	3	186	1	0	0	0	0	0	0	0	1	4920	697	25	4		4	EDNRB	13	78477336	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	40798116	78477336	36692542	145	23407											
POTEG	404785	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	19553734	19553734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POTEG	NM_001005356	exon1	c.C318A	p.F106L	CTGCTTCCCCTGC	.	487	78	531	1	.	1	A	19553734	C	A	19553734	3	1	186	1	0	0	0	0	1	0	0	0	12266	854	30	3	320	3	POTEG	14	19553734	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10		19553734	87795806	146	23408											
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20215690	20215690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A104C	p.Y35S	TTTTTTACATTGC	.	311	63	348	0	.	71	C	20215690	A	C	20215690	3	2	186	1	0	0	0	0	1	0	0	0	11081	391	14	5	106	5	OR4Q3	14	20215690	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	661956	20215690	87133850	147	23409											
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20216358	20216358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A772T	p.I258F	GTATTCATCTATT	.	164	19	189	0	.	71	T	20216358	A	T	20216358	3	4	186	1	0	0	0	0	1	0	0	0	11081	217	8	4	774	4	OR4Q3	14	20216358	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	668	20216358	87133182	148	23410											
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20925548	20925548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APEX1	NM_080648	exon5	c.T838A	p.W280R	GTTGGTTGGCGCC	.	156	52	175	0	.	661	A	20925548	T	A	20925548	3	1	186	1	0	0	0	0	1	0	0	0	769	1812	63	4	852	4	APEX1	14	20925548	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	709190	20925548	86423992	149	23411											
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24807239	24807239	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIPK3	NM_006871	exon6	c.C672A	p.T224T	TGGTTCGGTTGGC	.	80	36	77	0	.	946	T	24807239	G	T	24807239	2	4	186	1	0	0	0	0	0	0	0	1	13382	1103	39	1		1	RIPK3	14	24807239	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	3881691	24807239	82542301	150	23412											
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59961929	59961929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	JKAMP	NM_016475	exon4	c.G445T	p.A149S	CATGAAGCCGTCT	.	190	69	211	0	.	67	T	59961929	G	T	59961929	3	4	186	1	0	0	0	0	1	0	0	0	7949	971	34	3	459	3	JKAMP	14	59961929	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	35154690	59961929	47387611	151	23413											
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	99640967	99640967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BCL11B	NM_138576	exon4	c.C2206A	p.P736T	CGAAGGGCGACTG	.	33	14	14	0	.	1147	T	99640967	G	T	99640967	3	4	186	1	0	0	0	0	1	0	0	0	1364	1203	42	3	482	3	BCL11B	14	99640967	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	39679038	99640967	7708573	152	23414											
SERINC4	619189	broad.mit.edu;bcgsc.ca	37	15	44087217	44087217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SERINC4	NM_001258031	exon12	c.1538delA	p.N513fs	TATTTGTTATCTG	.	14	9	22	0	.	90	-	44087217	T	-	44087217	7	5	186	1	0	1	0	1	0	0	0	0	14082	1725	60	0	22	0	SERINC4	15	44087217	Frame_Shift_Del	DEL	T	TCGA-RC-A6M6-01A-11D-A32G-10		44087217	58444175	153	23415											
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48063978	48063978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA6D	NM_153618	exon19	c.A3218G	p.Y1073C	ACACATACTAGGC	.	86	26	67	1	.	138	G	48063978	A	G	48063978	3	3	186	1	0	0	0	0	1	0	0	0	14042	391	14	2	3331	2	SEMA6D	15	48063978	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	3976761	48063978	54467414	154	23416											
CCDC33	80125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74560789	74560789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	CCDC33,NS,carcinoma,+1	CCDC33	NM_025055	exon5	c.T536C	p.M179T	ACCACATGGCTCT	.	25	6	32	0	.	95	C	74560789	T	C	74560789	3	2	186	1	0	0	0	0	1	0	0	0	2806	1464	51	2	554	2	CCDC33	15	74560789	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	26496811	74560789	27970603	155	23417											
ARID3B	10620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74836589	74836589	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ARID3B	NM_006465	exon2	c.T312C	p.D104D	TGGGGATGATGAA	.	144	27	187	0	.	90	C	74836589	T	C	74836589	2	2	186	1	0	0	0	0	0	0	0	1	917	1461	51	2		2	ARID3B	15	74836589	Silent	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	275800	74836589	27694803	156	23418											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75705361	75705361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SIN3A	NM_001145358	exon5	c.C499T	p.R167C	ACACACGACTAAT	.	123	41	108	0	.	230	A	75705361	G	A	75705361	3	1	186	1	0	0	0	0	1	0	0	0	14325	1058	37	1	3390	1	SIN3A	15	75705361	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	868772	75705361	26826031	157	23419											
PIGQ	9091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	625870	625870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGQ	NM_148920	exon3	c.G721A	p.G241R	TTCCTCGGGAGCA	.	18	14	33	0	.	226	A	625870	G	A	625870	3	1	186	1	0	0	0	0	1	0	0	0	11896	1116	39	1	727	1	PIGQ	16	625870	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		625870	89728883	158	23420											
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1537527	1537527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTX4	NM_001013658	exon2	c.C571A	p.P191T	CCTCAGGCTGGGT	.	55	34	71	0	.	90	T	1537527	G	T	1537527	3	4	186	1	0	0	0	0	1	0	0	0	12823	1203	42	3	857	3	PTX4	16	1537527	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	911657	1537527	88817226	159	23421											
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11056338	11056338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CLEC16A	NM_015226	exon3	c.T236G	p.V79G	TGTTTGTTTTCTT	.	94	38	99	0	.	92	G	11056338	T	G	11056338	3	3	186	1	0	0	0	0	1	0	0	0	3500	1725	60	5	246	5	CLEC16A	16	11056338	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	9518811	11056338	79298415	160	23422											
SYT17	51760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19234475	19234475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SYT17	NM_016524	exon6	c.A1060T	p.S354C	GATGTGAGCCAAG	.	89	33	91	0	.	69	T	19234475	A	T	19234475	3	4	186	1	0	0	0	0	1	0	0	0	15470	304	11	4	1082	4	SYT17	16	19234475	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	8178137	19234475	71120278	161	23423											
ACSM2A	123876	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20476838	20476838	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACSM2A	NM_001010845	exon4	c.178-1G>A	.	TCCTCAGGCTGGC	.	202	73	190	2	.	91	A	20476838	G	A	20476838	5	1	186	1	0	0	0	0	0	0	1	0	183	1014	35	3	183	3	ACSM2A	16	20476838	Splice_Site	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	1242363	20476838	69877915	162	23424											
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23703609	23703609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERN2	NM_033266	exon18	c.A2288G	p.Y763C	AGCACGTAGTAGA	.	21	8	21	0	.	322	C	23703609	T	C	23703609	3	2	186	1	0	0	0	0	1	0	0	0	5238	1638	57	2	656	2	ERN2	16	23703609	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	3226771	23703609	66651144	163	23425											
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	57604440	57604440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR114	NM_153837	exon10	c.A1201T	p.M401L	CAGAACATGTCCA	.	20	8	18	0	.	90	T	57604440	A	T	57604440	3	4	186	1	0	0	0	0	1	0	0	0	6631	217	8	4	1235	4	GPR114	16	57604440	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	33900831	57604440	32750313	164	23426											
VAC14	55697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70778459	70778459	+	Silent	SNP	C	C	A	rs145571853	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VAC14	NM_018052	exon13	c.G1395T	p.V465V	TGCCAGCACCTCC	.	64	16	54	0	C|1.000;T|0.000	227	A	70778459	C	A	70778459	2	1	186	1	0	0	0	0	0	0	0	1	17108	697	25	3		3	VAC14	16	70778459	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	13174019	70778459	19576294	165	23427											
HPR	3250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72108240	72108240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPR	NM_020995	exon3	c.149delG	p.R50fs	TGTTTCGCTACCA	.	347	106	355	0	.	515	-	72108240	G	-	72108240	7	5	186	1	0	1	0	1	0	0	0	0	7337	1087	38	0	159	0	HPR	16	72108240	Frame_Shift_Del	DEL	G	TCGA-RC-A6M6-01A-11D-A32G-10	1329781	72108240	18246513	166	23428											
KIAA1609	57707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84514214	84514214	+	Missense_Mutation	SNP	G	G	A	rs149378530	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1609	NM_020947	exon7	c.C1178T	p.P393L	AGCTGCGGGCTGT	.	91	43	88	0	G|1.000;T|0.000	92	A	84514214	G	A	84514214	3	1	186	1	0	0	0	0	1	0	0	0	8247	1116	39	1	200	1	KIAA1609	16	84514214	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	12405974	84514214	5840539	167	23429											
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7254302	7254302	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACAP1	NM_014716	exon21	c.G2106A	p.A702A	TGAAGCGGCCCAG	.	30	20	53	0	.	153	A	7254302	G	A	7254302	2	1	186	1	0	0	0	0	0	0	0	1	118	1103	39	1		1	ACAP1	17	7254302	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		7254302	73940908	168	23430											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577064	7577064	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	TP53,NS,carcinoma,+1	TP53	NM_000546	exon8	c.A874T	p.K292X	CCCCTTTCTTGCG	.	35	17	60	0	.	70225	A	7577064	T	A	7577064	4	1	186	1	0	0	0	0	0	1	0	0	16378	1792	62	4	412	4	TP53	17	7577064	Nonsense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	322762	7577064	73618146	169	23431											
GAS7	8522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9846500	9846500	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GAS7	NM_201433	exon7	c.G669T	p.L223L	CTGGAGCAGTAGT	.	36	24	84	0	.	1083	A	9846500	C	A	9846500	2	1	186	1	0	0	0	0	0	0	0	1	6250	697	25	3		3	GAS7	17	9846500	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	2269436	9846500	71348710	170	23432											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10307807	10307807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH8	NM_002472	exon22	c.T2528A	p.L843H	CTCTTGAGGAGGG	.	257	169	411	1	.	101	T	10307807	A	T	10307807	3	4	186	1	0	0	0	0	1	0	0	0	10041	304	11	4	3361	4	MYH8	17	10307807	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	461307	10307807	70887403	171	23433											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10411951	10411951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH1	NM_005963	exon16	c.G1626A	p.M542I	GGGGAACATGCAC	.	46	33	81	0	.	171	T	10411951	C	T	10411951	3	4	186	1	0	0	0	0	1	0	0	0	10029	478	17	3	4293	3	MYH1	17	10411951	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	104144	10411951	70783259	172	23434											
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35298050	35298050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LHX1	NM_005568	exon3	c.C541T	p.R181W	AAGCGGCGGGGAC	.	39	14	28	0	.	92	T	35298050	C	T	35298050	3	4	186	1	0	0	0	0	1	0	0	0	8770	759	27	1	551	1	LHX1	17	35298050	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	24886099	35298050	45897160	173	23435											
ACACA	31	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35545226	35545226	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACACA	NM_198834	exon39	c.G4767A	p.R1589R	TGCTGTCCTGGAG	.	105	43	153	1	.	154	T	35545226	C	T	35545226	2	4	186	1	0	0	0	0	0	0	0	1	106	854	30	3		3	ACACA	17	35545226	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	247176	35545226	45649984	174	23436											
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39723992	39723992	+	Nonsense_Mutation	SNP	C	C	A	rs201817471	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KRT9	NM_000226	exon7	c.G1405T	p.G469X	CAGCTCCGGAGGA	.	29	17	32	0	C|0.999;G|0.000	92	A	39723992	C	A	39723992	4	1	186	1	0	0	0	0	0	1	0	0	8501	661	23	1	470	1	KRT9	17	39723992	Nonsense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	4178766	39723992	41471218	175	23437											
HAP1	9001	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39881005	39881005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HAP1	NM_177977	exon11	c.A1808C	p.H603P	GCCCCGTGGGGGC	.	17	5	36	1	.	92	G	39881005	T	G	39881005	3	3	186	1	0	0	0	0	1	0	0	0	6953	1696	59	5	55	5	HAP1	17	39881005	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	157013	39881005	41314205	176	23438											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74014610	74014611	+	Frame_Shift_Ins	INS	-	-	CCCT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EVPL	NM_001988	exon12	c.1356_1357insAGGG	p.G452fs	GCCAGGGCCCTGC	.	124	26	77	0	.	93	CCCT	74014611	-	CCCT	74014610	7	5	186	1	0	1	1	0	0	0	0	0	5292	1190	42	0	4789	0	EVPL	17	74014610	Frame_Shift_Ins	INS	-	TCGA-RC-A6M6-01A-11D-A32G-10	34133605	74014610	7180600	177	23439											
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76120809	76120809	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TMC6	NM_001127198	exon8	c.G687A	p.P229P	GCGCCACGGCATC	.	89	26	50	0	.	90	T	76120809	C	T	76120809	2	4	186	1	0	0	0	0	0	0	0	1	15986	523	19	1		1	TMC6	17	76120809	Silent	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	2106199	76120809	5074401	178	23440											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76490821	76490821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH17	NM_173628	exon40	c.G6124C	p.A2042P	CCTCTGCCCGGCT	.	33	15	32	0	.	142	G	76490821	C	G	76490821	3	3	186	1	0	0	0	0	1	0	0	0	4601	739	26	4	7432	4	DNAH17	17	76490821	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	370012	76490821	4704389	179	23441											
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3879551	3879551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DLGAP1	NM_001242761	exon4	c.C518T	p.A173V	GCCTGCGCCTCGT	.	31	11	26	0	.	229	A	3879551	G	A	3879551	3	1	186	1	0	0	0	0	1	0	0	0	4559	1087	38	1	2510	1	DLGAP1	18	3879551	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		3879551	74197697	180	23442											
SPIRE1	56907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12454401	12454401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPIRE1	NM_001128626	exon13	c.G1720A	p.E574K	CCAGCTCTGCCTT	.	174	63	183	0	.	90	T	12454401	C	T	12454401	3	4	186	1	0	0	0	0	1	0	0	0	15070	922	32	3	570	3	SPIRE1	18	12454401	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	8574850	12454401	65622847	181	23443											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21523852	21523852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LAMA3	NM_198129	exon69	c.C9127A	p.R3043S	AAAGGACGTCTGG	.	74	31	85	0	.	100	A	21523852	C	A	21523852	3	1	186	1	0	0	0	0	1	0	0	0	8607	536	19	1	9576	1	LAMA3	18	21523852	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	9069451	21523852	56553396	182	23444											
RTTN	25914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67802444	67802444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RTTN	NM_173630	exon22	c.A2861G	p.D954G	ACTTCATCAAATA	.	193	42	171	0	.	141	C	67802444	T	C	67802444	3	2	186	1	0	0	0	0	1	0	0	0	13737	1435	50	2	3931	2	RTTN	18	67802444	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	46278592	67802444	10274804	183	23445											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1051046	1051046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCA7	NM_019112	exon19	c.T2679A	p.F893L	GCTGTTTGACATG	.	24	14	47	0	.	98	A	1051046	T	A	1051046	3	1	186	1	0	0	0	0	1	0	0	0	37	1809	63	4	2749	4	ABCA7	19	1051046	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10		1051046	58077937	184	23446											
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3783884	3783884	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MATK	NM_002378	exon6	c.C513T	p.R171R	CAGCACGCGGTAG	.	59	39	80	0	.	521	A	3783884	G	A	3783884	2	1	186	1	0	0	0	0	0	0	0	1	9332	1074	38	1		1	MATK	19	3783884	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	2732838	3783884	55345099	185	23447											
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6678293	6678293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C3	NM_000064	exon40	c.4720delG	p.D1574fs	CCTCATCCGAGCC	.	51	29	94	0	.	95	-	6678293	C	-	6678293	7	5	186	1	0	1	0	1	0	0	0	0	2204	855	30	0	279	0	C3	19	6678293	Frame_Shift_Del	DEL	C	TCGA-RC-A6M6-01A-11D-A32G-10	2894409	6678293	52450690	186	23448											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10610444	10610444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KEAP1	NM_012289	exon2	c.C266T	p.P89L	GCGGCCGGTGCAT	.	38	30	54	0	.	637	A	10610444	G	A	10610444	3	1	186	1	0	0	0	0	1	0	0	0	8141	1116	39	1	1628	1	KEAP1	19	10610444	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	3932151	10610444	48518539	187	23449											
F2RL3	9002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17001135	17001135	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	F2RL3	NM_003950	exon2	c.G861T	p.V287V	CGCAGTGGTGCTG	.	36	19	18	0	.	226	T	17001135	G	T	17001135	2	4	186	1	0	0	0	0	0	0	0	1	5346	1335	47	3		3	F2RL3	19	17001135	Silent	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	6390691	17001135	42127848	188	23450											
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22574550	22574550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF98	NM_001098626	exon4	c.G1487C	p.G496A	GCTTTGCCACATT	.	330	85	257	0	.	24	G	22574550	C	G	22574550	3	3	186	1	0	0	0	0	1	0	0	0	18200	739	26	4	235	4	ZNF98	19	22574550	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	5573415	22574550	36554433	189	23451											
CEACAM3	1084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42301829	42301829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CEACAM3	NM_001815	exon2	c.A373T	p.I125L	CAAGTCATAAAGT	.	63	38	99	0	.	91	T	42301829	A	T	42301829	3	4	186	1	0	0	0	0	1	0	0	0	3193	217	8	4	379	4	CEACAM3	19	42301829	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	19727279	42301829	16827154	190	23452											
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51021453	51021453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRRC4B	NM_001080457	exon3	c.C1517T	p.P506L	CCCCGCGGCTGCA	.	15	14	15	0	.	205	A	51021453	G	A	51021453	3	1	186	1	0	0	0	0	1	0	0	0	9007	1116	39	1	628	1	LRRC4B	19	51021453	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	8719624	51021453	8107530	191	23453											
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52376841	52376841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A402T	p.R134S	AACACATCTATGG	.	60	37	135	0	.	91	A	52376841	T	A	52376841	3	1	186	1	0	0	0	0	1	0	0	0	18006	1432	50	4	1059	4	ZNF577	19	52376841	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	1355388	52376841	6752142	192	23454											
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52376925	52376925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A318T	p.K106N	AGAATCTTTTCCT	.	49	33	93	0	.	91	A	52376925	T	A	52376925	3	1	186	1	0	0	0	0	1	0	0	0	18006	1606	56	4	1143	4	ZNF577	19	52376925	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	84	52376925	6752058	193	23455											
PRPF31	26121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54626868	54626868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRPF31	NM_015629	exon6	c.T456A	p.N152K	GAACAATGAGAAC	.	81	44	74	0	.	91	A	54626868	T	A	54626868	3	1	186	1	0	0	0	0	1	0	0	0	12566	1461	51	4	474	4	PRPF31	19	54626868	Missense_Mutation	SNP	T	TCGA-RC-A6M6-01A-11D-A32G-10	2249943	54626868	4502115	194	23456											
ZNF667	63934	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952664	56952664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF667	NM_022103	exon5	c.G1700T	p.G567V	TCTGAGCCACTGC	.	128	72	108	1	.	91	A	56952664	C	A	56952664	3	1	186	1	0	0	0	0	1	0	0	0	18071	739	26	3	136	3	ZNF667	19	56952664	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	2325796	56952664	2176319	195	23457											
ISM1	140862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13269286	13269286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ISM1	NM_080826	exon4	c.G743A	p.C248Y	ACGCGTGCACTGC	.	67	28	49	1	.	68	A	13269286	G	A	13269286	3	1	186	1	0	0	0	0	1	0	0	0	7860	1319	46	3	757	3	ISM1	20	13269286	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		13269286	49756234	196	23458											
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50071174	50071174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NFATC2	NM_012340	exon6	c.G1760A	p.S587N	AGGCAGCTGTCTG	.	120	71	74	0	.	92	T	50071174	C	T	50071174	3	4	186	1	0	0	0	0	1	0	0	0	10362	797	28	3	1085	3	NFATC2	20	50071174	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	36801888	50071174	12954346	197	23459											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu	37	20	50292712	50292712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP9A	NM_006045	exon10	c.G835C	p.E279Q	GGAGTTCTCTGCC	.	132	7	105	0	.	94	G	50292712	C	G	50292712	3	3	186	1	0	0	0	0	1	0	0	0	1198	922	32	4	2384	4	ATP9A	20	50292712	Missense_Mutation	SNP	C	TCGA-RC-A6M6-01A-11D-A32G-10	221538	50292712	12732808	198	23460											
PDXK	8566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45175644	45175644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDXK	NM_003681	exon10	c.A825T	p.K275N	TGCAAAAGGTACG	.	14	8	24	0	.	205	T	45175644	A	T	45175644	3	4	186	1	0	0	0	0	1	0	0	0	11697	86	3	4	863	4	PDXK	21	45175644	Missense_Mutation	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10		45175644	2954251	199	23461											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47856895	47856895	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCNT	NM_006031	exon40	c.A9000T	p.T3000T	CAGGACAGTTAAT	.	25	11	39	0	.	141	T	47856895	A	T	47856895	2	4	186	1	0	0	0	0	0	0	0	1	11590	175	7	4		4	PCNT	21	47856895	Silent	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	2681251	47856895	273000	200	23462											
RIMBP3	85376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20458090	20458090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_015672	exon1	c.C3212A	p.T1071N	GACATAGTTCCCC	.	408	94	466	1	.	.	T	20458090	G	T	20458090	3	4	186	1	0	0	0	0	1	0	0	0	13364	1029	36	3	1711	3	RIMBP3	22	20458090	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		20458090	30846476	201	23463											
PPIL2	23759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22025285	22025298	+	Frame_Shift_Del	DEL	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PPIL2	NM_014337	exon4	c.129_141del	p.43_47del	TTTTCAGTCTCTC	.	140	10	209	0	.	92	-	22025298	GTCTCTCTCTGCAG	-	22025285	7	5	186	1	0	1	0	1	0	0	0	0	12327	1043	36	0	142	0	PPIL2	22	22025285	Frame_Shift_Del	DEL	GTCTCTCTCTGCAG	TCGA-RC-A6M6-01A-11D-A32G-10	1567195	22025285	29279281	202	23464											
VPREB3	29802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24096504	24096504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VPREB3	NM_013378	exon1	c.C47T	p.S16L	TCACCTGACAGGA	.	74	24	100	0	.	90	A	24096504	G	A	24096504	3	1	186	1	0	0	0	0	1	0	0	0	17184	1294	45	3	332	3	VPREB3	22	24096504	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	2071219	24096504	27208062	203	23465											
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37334154	37334154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSF2RB	NM_000395	exon14	c.G2304T	p.E768D	TGTGGAGCTCCCT	.	36	16	33	0	.	93	T	37334154	G	T	37334154	3	4	186	1	0	0	0	0	1	0	0	0	3935	962	34	3	2354	3	CSF2RB	22	37334154	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	13237650	37334154	13970412	204	23466											
GTPBP1	9567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39125539	39125539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GTPBP1	NM_004286	exon11	c.G1789T	p.G597C	AAAAAGGGCCCCC	.	70	18	76	0	.	91	T	39125539	G	T	39125539	3	4	186	1	0	0	0	0	1	0	0	0	6878	1232	43	3	1831	3	GTPBP1	22	39125539	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10	1791385	39125539	12179027	205	23467											
TUBGCP6	85378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50656529	50656539	+	Frame_Shift_Del	DEL	TTCTCCGTGAG	TTCTCCGTGAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TTCTCCGTGAG	TTCTCCGTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBGCP6	NM_020461	exon24	c.5176_5186del	p.1726_1729del	GCCGCCTTCTCCG	.	34	12	37	0	.	93	-	50656539	TTCTCCGTGAG	-	50656529	7	5	186	1	0	1	0	1	0	0	0	0	16767	1609	56	0	281	0	TUBGCP6	22	50656529	Frame_Shift_Del	DEL	TTCTCCGTGAG	TCGA-RC-A6M6-01A-11D-A32G-10	11530990	50656529	648037	206	23468											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149528	34149528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAM47A	NM_203408	exon1	c.C868G	p.P290A	CTGTGGGTTCGTC	.	71	56	70	0	.	134	C	34149528	G	C	34149528	3	2	186	1	0	0	0	0	1	0	0	0	5569	1261	44	4	1511	4	FAM47A	23	34149528	Missense_Mutation	SNP	G	TCGA-RC-A6M6-01A-11D-A32G-10		34149528	121121032	207	23469											
POF1B	79983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84561303	84561303	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POF1B	NM_024921	exon12	c.T1201C	p.L401L	CTTCCAATGCCTG	.	87	67	113	0	.	130	G	84561303	A	G	84561303	2	3	186	1	0	0	0	0	0	0	0	1	12182	98	4	2		2	POF1B	23	84561303	Silent	SNP	A	TCGA-RC-A6M6-01A-11D-A32G-10	50411775	84561303	70709257	208	23470											
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16577608	16577609	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	FBXO42	NM_018994	exon10	c.1711_1712insG	p.P571fs	CCGAGGGGCCTTT	.	31	22	91	0	.	228	C	16577609	-	C	16577608	7	5	187	1	0	1	1	0	0	0	0	0	5751	1232	43	0	446	0	FBXO42	1	16577608	Frame_Shift_Ins	INS	-	TCGA-RC-A7S9-01A-11D-A33Q-10		16577608	232673013	1	23471											
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89318944	89318944	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GTF2B	NM_001514	exon7	c.903delT	p.P301fs	GTCTGTAGGAAAC	.	40	12	73	0	.	154	-	89318944	A	-	89318944	7	5	187	1	0	1	0	1	0	0	0	0	6855	407	15	0	51	0	GTF2B	1	89318944	Frame_Shift_Del	DEL	A	TCGA-RC-A7S9-01A-11D-A33Q-10	72741336	89318944	159931677	2	23472											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114399229	114399229	+	Missense_Mutation	SNP	G	G	A	rs115552198	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PTPN22	NM_015967	exon6	c.C421T	p.R141C	AGTAGCGCTCACA	.	117	43	209	0	G|1.000;A|0.000	227	A	114399229	G	A	114399229	3	1	187	1	0	0	0	0	1	0	0	0	12787	1087	38	1	2089	1	PTPN22	1	114399229	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	25080285	114399229	134851392	3	23473											
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162343882	162343882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	C1orf111	NM_182581	exon3	c.G742A	p.E248K	GGTGTTCAGCAGG	.	117	28	108	0	.	69	T	162343882	C	T	162343882	3	4	187	1	0	0	0	0	1	0	0	0	1984	835	29	3	47	3	C1orf111	1	162343882	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	47944653	162343882	86906739	4	23474											
LYST	1130	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235955200	235955200	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	LYST	NM_000081	exon12	c.C4342G	p.L1448V	ATGAAAGCAGCCG	.	164	30	137	0	.	143	C	235955200	G	C	235955200	3	2	187	1	0	0	0	0	1	0	0	0	9128	971	34	4	7231	4	LYST	1	235955200	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	73611318	235955200	13295421	5	23475											
GPR137B	7107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236306038	236306038	+	Missense_Mutation	SNP	C	C	A	rs199613305	alternate_allele	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GPR137B	NM_003272	exon1	c.C116A	p.P39H	TGCCCCCCTACGT	.	104	31	67	0	C|0.999;T|0.001	90	A	236306038	C	A	236306038	3	1	187	1	0	0	0	0	1	0	0	0	6646	623	22	3	118	3	GPR137B	1	236306038	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	350838	236306038	12944583	6	23476											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237774131	237774131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RYR2	NM_001035	exon36	c.C4753T	p.R1585C	CCCCCGCGCCTCC	.	133	55	135	0	.	158	T	237774131	C	T	237774131	3	4	187	1	0	0	0	0	1	0	0	0	13769	768	27	1	4895	1	RYR2	1	237774131	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	1468093	237774131	11476490	7	23477											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21229749	21229749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	APOB	NM_000384	exon26	c.A9991G	p.I3331V	CAGGAATAAAAAT	.	147	55	229	0	.	175	C	21229749	T	C	21229749	3	2	187	1	0	0	0	0	1	0	0	0	785	1406	49	2	3716	2	APOB	2	21229749	Missense_Mutation	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10		21229749	221969624	8	23478											
AGBL5	60509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27282078	27282078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	AGBL5	NM_021831	exon11	c.C1895A	p.S632Y	CCTGCTCCGAAAA	.	152	68	235	0	.	154	A	27282078	C	A	27282078	3	1	187	1	0	0	0	0	1	0	0	0	378	855	30	3	1933	3	AGBL5	2	27282078	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	6052329	27282078	215917295	9	23479											
SULT1C3	442038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108872149	108872149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SULT1C3	NM_001008743	exon4	c.G521C	p.G174A	TGTCCGGAAAAGG	.	37	20	74	0	.	91	C	108872149	G	C	108872149	3	2	187	1	0	0	0	0	1	0	0	0	15375	1174	41	4	535	4	SULT1C3	2	108872149	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	81590071	108872149	134327224	10	23480											
UBXN4	23190	ucsc.edu;bcgsc.ca	37	2	136505940	136505940	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	UBXN4	NM_014607	exon2	c.185+1G>T	.	CAAAAGGTTTGTT	.	33	4	41	0	.	92	T	136505940	G	T	136505940	5	4	187	1	0	0	0	0	0	0	1	0	16913	1275	44	3	192	3	UBXN4	2	136505940	Splice_Site	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	27633791	136505940	106693433	11	23481											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167163101	167163101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SCN9A	NM_002977	exon4	c.G386T	p.S129I	AGCATGCTGAATA	.	59	24	65	0	.	181	A	167163101	C	A	167163101	3	1	187	1	0	0	0	0	1	0	0	0	13925	797	28	3	5643	3	SCN9A	2	167163101	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	30657161	167163101	76036272	12	23482											
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179544684	179544699	+	Frame_Shift_Del	DEL	ACTCTTCTTCTTCTTC	ACTCTTCTTCTTCTTC	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	ACTCTTCTTCTTCTTC	ACTCTTCTTCTTCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TTN	NM_001267550	exon140	c.33502_33517del	p.11168_11173del	GAATGTACTCTTC	.	90	22	130	0	.	636	-	179544699	ACTCTTCTTCTTCTTC	-	179544684	7	5	187	1	0	1	0	1	0	0	0	0	16732	391	14	0	70904	0	TTN	2	179544684	Frame_Shift_Del	DEL	ACTCTTCTTCTTCTTC	TCGA-RC-A7S9-01A-11D-A33Q-10	12381583	179544684	63654689	13	23483			1	21		2	2	19	N	C_ACTCTTCTTCTTCTTC	3.604965e-05
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179544702	179544702	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TTN	NM_001267550	exon140	c.G33499C	p.V11167L	CTTCTACAAGATA	.	85	24	150	0	.	636	G	179544702	C	G	179544702	3	3	187	1	0	0	0	0	1	0	0	0	16732	478	17	4	70922	4	TTN	2	179544702	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	18	179544702	63654671	14	23484			1	21		2	2	19	N	C_ACTCTTCTTCTTCTTC	3.604965e-05
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201527688	201527688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	AOX1	NM_001159	exon31	c.A3539G	p.H1180R	GGGATCATAAGGT	.	54	24	89	0	.	96	G	201527688	A	G	201527688	3	3	187	1	0	0	0	0	1	0	0	0	729	217	8	2	3661	2	AOX1	2	201527688	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10	21982986	201527688	41671685	15	23485											
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222428734	222428734	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	EPHA4	NM_004438	exon3	c.G540A	p.G180G	GTAAAACCCCTTT	.	49	23	92	0	.	1441	T	222428734	C	T	222428734	2	4	187	1	0	0	0	0	0	0	0	1	5169	494	18	3		3	EPHA4	2	222428734	Silent	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	20901046	222428734	20770639	16	23486											
COL7A1	1294	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48610318	48610318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	COL7A1	NM_000094	exon86	c.G6808T	p.D2270Y	CTCTGTCTCCATC	.	79	29	117	1	.	160	A	48610318	C	A	48610318	3	1	187	1	0	0	0	0	1	0	0	0	3704	913	32	3	2158	3	COL7A1	3	48610318	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10		48610318	149412112	17	23487											
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49162918	49162918	+	Splice_Site	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	LAMB2	NM_002292	exon20	c.2489-1G>T	.	GGCAGGCTAGGAG	.	121	39	150	0	.	93	A	49162918	C	A	49162918	5	1	187	1	0	0	0	0	0	0	1	0	8611	811	28	3	2964	3	LAMB2	3	49162918	Splice_Site	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	552600	49162918	148859512	18	23488											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52361949	52361949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	DNAH1	NM_015512	exon6	c.A790G	p.M264V	ATCAACATGGGCT	.	126	67	200	0	.	67	G	52361949	A	G	52361949	3	3	187	1	0	0	0	0	1	0	0	0	4597	217	8	2	808	2	DNAH1	3	52361949	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10	3199031	52361949	145660481	19	23489											
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58520174	58520175	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	.	.	.	p.A79N	ATGGCAGCCTTAT	.	116	50	160	0	.	.	TT	58520175	GC	TT	58520174	3	4	187	1	0	0	0	0	1	0	0	0	159	971	34	3	1861	3	ACOX2	3	58520174	Missense_Mutation	DNP	GC	TCGA-RC-A7S9-01A-11D-A33Q-10	6158225	58520174	139502256	20	23490											
CBLB	868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	105459455	105459455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CBLB	NM_170662	exon7	c.G866T	p.C289F	CGAGTGCAACTTA	.	54	21	93	0	.	849	A	105459455	C	A	105459455	3	1	187	1	0	0	0	0	1	0	0	0	2701	710	25	3	2134	3	CBLB	3	105459455	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	46939281	105459455	92562975	21	23491											
C3orf30	152405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	118865730	118865730	+	Missense_Mutation	SNP	G	G	A	rs148898242	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	C3orf30	NM_152539	exon1	c.G694A	p.V232I	TCATCCGTCCCAT	.	44	25	74	0	G|0.998;A|0.002	92	A	118865730	G	A	118865730	3	1	187	1	0	0	0	0	1	0	0	0	2220	1145	40	1	696	1	C3orf30	3	118865730	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	13406275	118865730	79156700	22	23492											
FSTL5	56884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162697194	162697194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	FSTL5	NM_020116	exon5	c.A442C	p.M148L	TTTTCATCTTGCT	.	92	39	160	1	.	158	G	162697194	T	G	162697194	3	3	187	1	0	0	0	0	1	0	0	0	6080	1435	50	5	2149	5	FSTL5	4	162697194	Missense_Mutation	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10		162697194	28457082	23	23493											
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237151	140237151	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PCDHA10	NM_031859	exon1	c.C1518T	p.Y506Y	GAGCTACGTGTCG	.	63	32	92	0	.	99	T	140237151	C	T	140237151	2	4	187	1	0	0	0	0	0	0	0	1	11520	547	19	1		1	PCDHA10	5	140237151	Silent	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10		140237151	40678109	24	23494											
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140558018	140558018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PCDHB8	NM_019120	exon1	c.C403A	p.L135M	GTATTTCTGGACA	.	963	126	1554	1	.	131	A	140558018	C	A	140558018	3	1	187	1	0	0	0	0	1	0	0	0	11548	912	32	3	405	3	PCDHB8	5	140558018	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	320867	140558018	40357242	25	23495											
BTNL2	56244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32370894	32370894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	BTNL2	NM_019602	exon3	c.A527G	p.Y176C	TCCCAATACACCT	.	170	100	151	0	.	90	C	32370894	T	C	32370894	3	2	187	1	0	0	0	0	1	0	0	0	1565	1406	49	2	856	2	BTNL2	6	32370894	Missense_Mutation	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10		32370894	138744173	26	23496											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43160821	43160821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CUL9	NM_015089	exon9	c.C2263T	p.L755F	CGCCTCCTTTACC	.	87	54	75	0	.	529	T	43160821	C	T	43160821	3	4	187	1	0	0	0	0	1	0	0	0	4061	681	24	3	2293	3	CUL9	6	43160821	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	10789927	43160821	127954246	27	23497											
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46797206	46797206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MEP1A	NM_005588	exon10	c.T1042C	p.Y348H	TTTTTCTATAAAA	.	120	34	131	0	.	183	C	46797206	T	C	46797206	3	2	187	1	0	0	0	0	1	0	0	0	9475	1522	53	2	1080	2	MEP1A	6	46797206	Missense_Mutation	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10	3636385	46797206	124317861	28	23498											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111694495	111694495	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	REV3L	NM_002912	exon13	c.5063delG	p.G1688fs	GCTTGTCCTGGAA	.	62	22	115	0	.	294	-	111694495	C	-	111694495	7	5	187	1	0	1	0	1	0	0	0	0	13240	855	30	0	4409	0	REV3L	6	111694495	Frame_Shift_Del	DEL	C	TCGA-RC-A7S9-01A-11D-A33Q-10	64897289	111694495	59420572	29	23499											
C6orf58	352999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127899881	127899881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	C6orf58	NM_001010905	exon2	c.G352C	p.D118H	TCTGGAGATCATA	.	65	28	99	0	.	90	C	127899881	G	C	127899881	3	2	187	1	0	0	0	0	1	0	0	0	2367	942	33	4	358	4	C6orf58	6	127899881	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	16205386	127899881	43215186	30	23500											
PCLO	27445	hgsc.bcm.edu;bcgsc.ca	37	7	82390054	82390055	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PCLO	NM_033026	exon24	c.15189_15190insA	p.K5063fs	GATCACCTTTTTT	.	195	72	325	0	.	29	T	82390055	-	T	82390054	7	5	187	1	0	1	1	0	0	0	0	0	11583	680	24	0	247	0	PCLO	7	82390054	Frame_Shift_Ins	INS	-	TCGA-RC-A7S9-01A-11D-A33Q-10		82390054	76748609	31	23501											
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126173751	126173751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GRM8	NM_000845	exon8	c.C1685G	p.P562R	ATGTTGGGTCTCT	.	110	62	187	0	.	581	C	126173751	G	C	126173751	3	2	187	1	0	0	0	0	1	0	0	0	6803	1232	43	4	1103	4	GRM8	7	126173751	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	43783697	126173751	32964912	32	23502											
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	146825914	146825914	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CNTNAP2	NM_014141	exon7	c.G1069T	p.E357X	AAATTAGAGCCCT	.	115	32	179	0	.	100	T	146825914	G	T	146825914	4	4	187	1	0	0	0	0	0	1	0	0	3647	943	33	3	1095	3	CNTNAP2	7	146825914	Nonsense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	20652163	146825914	12312749	33	23503											
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	18730005	18730005	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PSD3	NM_015310	exon3	c.C369T	p.L123L	TTCCTTGAGATGA	.	73	35	91	0	.	93	A	18730005	G	A	18730005	2	1	187	1	0	0	0	0	0	0	0	1	12648	1277	45	3		3	PSD3	8	18730005	Silent	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		18730005	127634017	34	23504											
ATP6V1B2	526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20068787	20068787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ATP6V1B2	NM_001693	exon6	c.A563C	p.K188T	GGCAGAAAATTCC	.	55	25	86	0	.	90	C	20068787	A	C	20068787	3	2	187	1	0	0	0	0	1	0	0	0	1179	14	1	5	585	5	ATP6V1B2	8	20068787	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10	1338782	20068787	126295235	35	23505											
ZNF703	80139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37553564	37553564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ZNF703	NM_025069	exon1	c.G67A	p.G23S	GGCGGCGGCGGGA	.	39	27	65	0	.	523	A	37553564	G	A	37553564	3	1	187	1	0	0	0	0	1	0	0	0	18103	1116	39	1	69	1	ZNF703	8	37553564	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	17484777	37553564	108810458	36	23506											
IKBKB	3551	ucsc.edu;bcgsc.ca	37	8	42146229	42146229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	IKBKB	NM_001556	exon3	c.G183T	p.E61D	CCTGGAGATCCAG	.	26	4	37	0	.	1164	T	42146229	G	T	42146229	3	4	187	1	0	0	0	0	1	0	0	0	7611	933	33	3	189	3	IKBKB	8	42146229	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	4592665	42146229	104217793	37	23507											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69030794	69030794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PREX2	NM_024870	exon27	c.C3336A	p.N1112K	CTGCAACAGCAAT	.	50	24	69	0	.	390	A	69030794	C	A	69030794	3	1	187	1	0	0	0	0	1	0	0	0	12477	477	17	3	3671	3	PREX2	8	69030794	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	26884565	69030794	77333228	38	23508											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72975718	72975718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TRPA1	NM_007332	exon5	c.T641A	p.M214K	ATTTCCATGCATT	.	41	25	69	0	.	230	T	72975718	A	T	72975718	3	4	187	1	0	0	0	0	1	0	0	0	16574	217	8	4	2810	4	TRPA1	8	72975718	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10	3944924	72975718	73388304	39	23509											
FOXD4L3	286380	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	70918928	70918928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	FOXD4L3	NM_199135	exon1	c.C1061T	p.T354I	CTGCCACCTGCTC	.	406	70	628	0	.	40	T	70918928	C	T	70918928	3	4	187	1	0	0	0	0	1	0	0	0	6001	507	18	3	1063	3	FOXD4L3	9	70918928	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10		70918928	70294503	40	23510											
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5437418	5437418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TUBAL3	NM_024803	exon3	c.C268A	p.H90N	AACGGTGCTGGCC	.	98	38	123	0	.	91	T	5437418	G	T	5437418	3	4	187	1	0	0	0	0	1	0	0	0	16748	1319	46	3	1080	3	TUBAL3	10	5437418	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		5437418	130097329	41	23511											
PRF1	5551	ucsc.edu;bcgsc.ca	37	10	72358910	72358910	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PRF1	NM_001083116	exon3	c.G567A	p.L189L	AGGGTGCAGCGGG	.	45	5	89	0	.	578	T	72358910	C	T	72358910	2	4	187	1	0	0	0	0	0	0	0	1	12478	697	25	3		3	PRF1	10	72358910	Silent	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	66921492	72358910	63175837	42	23512											
GLYAT	10249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58477472	58477472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GLYAT	NM_201648	exon6	c.G658A	p.D220N	TTAGATCCCAGCA	.	70	32	107	0	.	90	T	58477472	C	T	58477472	3	4	187	1	0	0	0	0	1	0	0	0	6479	855	30	3	236	3	GLYAT	11	58477472	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10		58477472	76529044	43	23513											
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111724383	111724383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ALG9	NM_001077690	exon8	c.A778G	p.I260V	ATAGTATGAGGGC	.	170	37	292	0	.	91	C	111724383	T	C	111724383	3	2	187	1	0	0	0	0	1	0	0	0	524	1464	51	2	1114	2	ALG9	11	111724383	Missense_Mutation	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10	53246911	111724383	23282133	44	23514											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6701152	6701152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CHD4	NM_001273	exon20	c.C3020T	p.S1007F	AGCAGAGACACCT	.	83	41	133	0	.	228	A	6701152	G	A	6701152	3	1	187	1	0	0	0	0	1	0	0	0	3327	942	33	3	2802	3	CHD4	12	6701152	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		6701152	127150743	45	23515											
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10783658	10783658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	STYK1	NM_018423	exon5	c.T437C	p.L146P	GCCTTGAGAATAA	.	87	13	151	0	.	1379	G	10783658	A	G	10783658	3	3	187	1	0	0	0	0	1	0	0	0	15358	304	11	2	859	2	STYK1	12	10783658	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10	4082506	10783658	123068237	46	23516											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109637211	109637211	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ACACB	NM_001093	exon17	c.C2632A	p.R878R	AGTTACCGAATTA	.	80	42	115	0	.	98	A	109637211	C	A	109637211	2	1	187	1	0	0	0	0	0	0	0	1	107	644	23	1		1	ACACB	12	109637211	Silent	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	98853553	109637211	24214684	47	23517											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953788	48953788	+	Splice_Site	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RB1	NM_000321	exon14	c.1389+2T>C	.	AATCAGTAAGTTA	.	72	49	310	0	.	3784	C	48953788	T	C	48953788	5	2	187	1	0	0	0	0	0	0	1	0	13098	1652	57	2	1445	2	RB1	13	48953788	Splice_Site	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10		48953788	66216090	48	23518											
CDH1	999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	68849486	68849486	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	CDH1,NS,carcinoma,+2	CDH1	NM_004360	exon10	c.G1389A	p.E463E	TTTTGAGGTCTCT	.	73	34	154	0	.	3377	A	68849486	G	A	68849486	2	1	187	1	0	0	0	0	0	0	0	1	3095	991	35	3		3	CDH1	16	68849486	Silent	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		68849486	21505267	49	23519											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26970215	26970215	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	KIAA0100	NM_014680	exon4	c.C363G	p.S121S	GCTGAAGGACAGT	.	51	21	81	0	.	93	C	26970215	G	C	26970215	2	2	187	1	0	0	0	0	0	0	0	1	8154	987	35	4		4	KIAA0100	17	26970215	Silent	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		26970215	54224995	50	23520											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29592294	29592294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	NF1	NM_001042492	exon36	c.G4772A	p.S1591N	CGTTAAGTATTTT	.	90	34	148	0	.	3353	A	29592294	G	A	29592294	3	1	187	1	0	0	0	0	1	0	0	0	10356	1029	36	3	4975	3	NF1	17	29592294	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	2622079	29592294	51602916	51	23521											
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34149836	34149836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TAF15	NM_139215	exon6	c.A483C	p.Q161H	CACACAAGGTAAG	.	144	55	264	0	.	723	C	34149836	A	C	34149836	3	2	187	1	0	0	0	0	1	0	0	0	15515	86	3	5	505	5	TAF15	17	34149836	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10	4557542	34149836	47045374	52	23522											
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14537872	14537872	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	POTEC	NM_001137671	exon3	c.T738C	p.A246A	GTGGACAGCATAG	.	178	81	319	0	.	3	G	14537872	A	G	14537872	2	3	187	1	0	0	0	0	0	0	0	1	12262	175	7	2		2	POTEC	18	14537872	Silent	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10		14537872	63539376	53	23523											
GATA6	2627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19756976	19756976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GATA6	NM_005257	exon3	c.C1196T	p.P399L	AGACGCCGCTGTG	.	35	14	36	0	.	514	T	19756976	C	T	19756976	3	4	187	1	0	0	0	0	1	0	0	0	6258	652	23	1	1202	1	GATA6	18	19756976	Missense_Mutation	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	5219104	19756976	58320272	54	23524											
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171379	4171379	+	Splice_Site	SNP	G	G	A	rs112561919	bycluster	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CREB3L3	NM_001271995	exon9	c.973-1G>A	.	CCACCAGGTCCTG	.	115	27	96	0	C|1.000	92	A	4171379	G	A	4171379	5	1	187	1	0	0	0	0	0	0	1	0	3858	1014	35	3	1009	3	CREB3L3	19	4171379	Splice_Site	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		4171379	54957604	55	23525											
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17442017	17442017	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ANO8	NM_020959	exon7	c.C711A	p.I237I	ATCACAGATGTCA	.	43	22	59	0	.	93	T	17442017	G	T	17442017	2	4	187	1	0	0	0	0	0	0	0	1	703	932	33	3		3	ANO8	19	17442017	Silent	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	13270638	17442017	41686966	56	23526											
ZNF257	113835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22271464	22271464	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ZNF257	NM_033468	exon4	c.T912C	p.T304T	CCTTACTCAACAT	.	95	52	114	0	.	90	C	22271464	T	C	22271464	2	2	187	1	0	0	0	0	0	0	0	1	17797	1538	54	2		2	ZNF257	19	22271464	Silent	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10	4829447	22271464	36857519	57	23527											
ZNF350	59348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52468329	52468329	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ZNF350	NM_021632	exon5	c.G1377A	p.G459G	AGTCGCCCCGTTA	.	76	10	100	0	.	227	T	52468329	C	T	52468329	2	4	187	1	0	0	0	0	0	0	0	1	17860	610	22	3		3	ZNF350	19	52468329	Silent	SNP	C	TCGA-RC-A7S9-01A-11D-A33Q-10	30196865	52468329	6660654	58	23528											
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34292616	34292616	+	Missense_Mutation	SNP	T	T	C	rs199587566		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RBM39	NM_184234	exon16	c.A1466G	p.N489S	AATGCATTGACAG	.	127	58	218	0	T|0.999;C|0.000	91	C	34292616	T	C	34292616	3	2	187	1	0	0	0	0	1	0	0	0	13133	1493	52	2	134	2	RBM39	20	34292616	Missense_Mutation	SNP	T	TCGA-RC-A7S9-01A-11D-A33Q-10		34292616	28732904	59	23529											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35258604	35258604	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ITSN1	NM_003024	exon39	c.G4857A	p.P1619P	CAACCCGTACTGT	.	113	51	166	0	.	94	A	35258604	G	A	35258604	2	1	187	1	0	0	0	0	0	0	0	1	7926	1132	40	1		1	ITSN1	21	35258604	Silent	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10		35258604	12871291	60	23530											
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45534063	45534063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PWP2	NM_005049	exon4	c.G230A	p.G77D	CAGGGGGCGATGC	.	22	14	46	0	.	91	A	45534063	G	A	45534063	3	1	187	1	0	0	0	0	1	0	0	0	12844	1203	42	3	244	3	PWP2	21	45534063	Missense_Mutation	SNP	G	TCGA-RC-A7S9-01A-11D-A33Q-10	10275459	45534063	2595832	61	23531											
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65244890	65244890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	VSIG4	NM_001257403	exon6	c.T917C	p.L306P	CGACAGAGCATGA	.	269	58	456	0	.	130	G	65244890	A	G	65244890	3	3	187	1	0	0	0	0	1	0	0	0	17222	304	11	2	298	2	VSIG4	23	65244890	Missense_Mutation	SNP	A	TCGA-RC-A7S9-01A-11D-A33Q-10		65244890	90025670	62	23532											
STK40	83931	broad.mit.edu;bcgsc.ca	37	1	36809753	36809754	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	STK40	NM_032017	exon9	c.851_852del	p.284_284del	GATCTTGCGGAAG	.	18	7	37	0	.	83	-	36809754	GC	-	36809753	7	5	188	1	0	1	0	1	0	0	0	0	15306	1306	46	0	471	0	STK40	1	36809753	Frame_Shift_Del	DEL	GC	TCGA-RC-A7SB-01A-21D-A34Z-10		36809753	212440868	1	23533											
AMY2A	279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	104160634	104160634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	AMY2A	NM_000699	exon2	c.G227T	p.R76I	GGGAAAGATACCA	.	307	107	414	0	.	92	T	104160634	G	T	104160634	3	4	188	1	0	0	0	0	1	0	0	0	594	942	33	3	233	3	AMY2A	1	104160634	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	67350881	104160634	145089987	2	23534											
HK2	3099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75081454	75081454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	HK2	NM_000189	exon2	c.A98G	p.D33G	TCTCTGATGAGAC	.	73	7	101	0	.	252	G	75081454	A	G	75081454	3	3	188	1	0	0	0	0	1	0	0	0	7191	333	12	2	104	2	HK2	2	75081454	Missense_Mutation	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10		75081454	168117919	3	23535											
LRP1B	53353	ucsc.edu;bcgsc.ca	37	2	141299516	141299516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	LRP1B	NM_018557	exon44	c.A7219G	p.T2407A	GGAAAGTCCCTGG	.	83	33	117	2	.	311	C	141299516	T	C	141299516	3	2	188	1	0	0	0	0	1	0	0	0	8955	1667	58	2	6772	2	LRP1B	2	141299516	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	66218062	141299516	101899857	4	23536											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152499357	152499357	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NEB	NM_004543	exon59	c.A8187G	p.K2729K	TTTATCTTTATCC	.	73	22	88	0	.	145	C	152499357	T	C	152499357	2	2	188	1	0	0	0	0	0	0	0	1	10302	1606	56	2		2	NEB	2	152499357	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	11199841	152499357	90700016	5	23537											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152525647	152525647	+	Splice_Site	SNP	T	T	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NEB	NM_001164507	exon40	c.4507-2A>C	.	TTCAACTAAAAAC	.	79	27	97	1	.	145	G	152525647	T	G	152525647	5	3	188	1	0	0	0	0	0	0	1	0	10302	1536	53	5	21757	5	NEB	2	152525647	Splice_Site	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	26290	152525647	90673726	6	23538											
TBR1	10716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162273413	162273413	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TBR1	NM_006593	exon1	c.C492T	p.S164S	CAACTCCTCGCCG	.	50	19	80	0	.	91	T	162273413	C	T	162273413	2	4	188	1	0	0	0	0	0	0	0	1	15644	668	24	3		3	TBR1	2	162273413	Silent	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	9747766	162273413	80925960	7	23539											
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	191110920	191110920	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	HIBCH	NM_014362	exon10	c.A769T	p.K257X	AAGACTTGTCTCG	.	95	40	97	0	.	90	A	191110920	T	A	191110920	4	1	188	1	0	0	0	0	0	1	0	0	7100	1821	63	4	411	4	HIBCH	2	191110920	Nonsense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	28837507	191110920	52088453	8	23540											
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9517712	9517712	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	SETD5	NM_001080517	exon23	c.G4266A	p.V1422V	GGGTGTGCACCAG	.	46	19	49	0	.	70	A	9517712	G	A	9517712	2	1	188	1	0	0	0	0	0	0	0	1	14134	1306	46	3		3	SETD5	3	9517712	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10		9517712	188504718	9	23541											
GPD1L	23171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32181733	32181733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	GPD1L	NM_015141	exon4	c.G380A	p.G127D	ACGAGGGCCCCGA	.	57	16	76	0	.	90	A	32181733	G	A	32181733	3	1	188	1	0	0	0	0	1	0	0	0	6605	1203	42	3	394	3	GPD1L	3	32181733	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	22664021	32181733	165840697	10	23542											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64666990	64666990	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ADAMTS9	NM_182920	exon3	c.A566T	p.Q189L	ATAGACTGTAGTG	.	156	74	176	0	.	230	A	64666990	T	A	64666990	3	1	188	1	0	0	0	0	1	0	0	0	273	1580	55	4	5389	4	ADAMTS9	3	64666990	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	32485257	64666990	133355440	11	23543											
BBX	56987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	107491784	107491817	+	Frame_Shift_Del	DEL	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	BBX	NM_001142568	exon11	c.1216_1249del	p.406_417del	AGTCATTTTCCTG	.	69	7	122	0	.	94	-	107491817	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	-	107491784	7	5	188	1	0	1	0	1	0	0	0	0	1343	1841	64	0	1246	0	BBX	3	107491784	Frame_Shift_Del	DEL	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	TCGA-RC-A7SB-01A-21D-A34Z-10	42824794	107491784	90530646	12	23544											
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141163098	141163098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ZBTB38	NM_001080412	exon8	c.A1868G	p.N623S	CTGTAAACACCCT	.	52	16	72	0	.	25	G	141163098	A	G	141163098	3	3	188	1	0	0	0	0	1	0	0	0	17536	43	2	2	1870	2	ZBTB38	3	141163098	Missense_Mutation	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10	33671314	141163098	56859332	13	23545											
HS3ST1	9957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	11401189	11401189	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	HS3ST1	NM_005114	exon2	c.A441G	p.R147R	CGGGTCTCGCAGG	.	46	20	59	0	.	91	C	11401189	T	C	11401189	2	2	188	1	0	0	0	0	0	0	0	1	7363	1538	54	2		2	HS3ST1	4	11401189	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		11401189	179753087	14	23546											
EGF	1950	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	110862303	110862303	+	Splice_Site	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	EGF	NM_001178130	exon2	c.327+2T>C	.	AAGAGGTAAAATA	.	26	14	62	1	.	524	C	110862303	T	C	110862303	5	2	188	1	0	0	0	0	0	0	1	0	4962	1652	57	2	335	2	EGF	4	110862303	Splice_Site	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	99461114	110862303	80291973	15	23547											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13700904	13700904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	DNAH5	NM_001369	exon78	c.A13568G	p.D4523G	ATGTCGTCCTTCA	.	88	31	118	0	.	182	C	13700904	T	C	13700904	3	2	188	1	0	0	0	0	1	0	0	0	4604	1667	58	2	314	2	DNAH5	5	13700904	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		13700904	167214356	16	23548											
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34823713	34823713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	RAI14	NM_001145525	exon17	c.A1775G	p.N592S	TTGAGAATATGAA	.	73	26	96	0	.	91	G	34823713	A	G	34823713	3	3	188	1	0	0	0	0	1	0	0	0	13008	101	4	2	1885	2	RAI14	5	34823713	Missense_Mutation	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10	21122809	34823713	146091547	17	23549											
HAPLN1	1404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82940454	82940454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	HAPLN1	NM_001884	exon4	c.G503T	p.G168V	TAGCGCCCCAGTC	.	44	20	68	0	.	580	A	82940454	C	A	82940454	3	1	188	1	0	0	0	0	1	0	0	0	6954	623	22	3	569	3	HAPLN1	5	82940454	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	48116741	82940454	97974806	18	23550											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140216124	140216124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PCDHA7	NM_031852	exon1	c.C2156G	p.T719R	TGTACACGGCGTT	.	38	14	50	0	.	94	G	140216124	C	G	140216124	3	3	188	1	0	0	0	0	1	0	0	0	11529	536	19	4	2158	4	PCDHA7	5	140216124	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	57275670	140216124	40699136	19	23551											
PCDHGC3	5098	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140856286	140856286	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PCDHGC3	NM_032402	exon1	c.C603A	p.A201A	GCGCGCCCTGGAC	.	26	11	34	0	.	24	A	140856286	C	A	140856286	2	1	188	1	0	0	0	0	0	0	0	1	11569	610	22	3		3	PCDHGC3	5	140856286	Silent	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	640162	140856286	40058974	20	23552											
KAAG1	353219	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24358008	24358008	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	KAAG1	NM_181337	exon1	c.T141A	p.A47A	GCTCGCTGCTTCG	.	23	5	32	0	.	90	A	24358008	T	A	24358008	2	1	188	1	0	0	0	0	0	0	0	1	7973	1567	55	4		4	KAAG1	6	24358008	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		24358008	146757059	21	23553											
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154411035	154411035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	OPRM1	NM_001145279	exon4	c.C644G	p.T215S	CCAGTACCCTGCC	.	63	30	64	0	.	69	G	154411035	C	G	154411035	3	3	188	1	0	0	0	0	1	0	0	0	10887	507	18	4	705	4	OPRM1	6	154411035	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	130053027	154411035	16704032	22	23554											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157150470	157150470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ARID1B	NM_017519	exon2	c.G1652A	p.G551D	CCTATGGCCCTCC	.	85	35	91	0	.	154	A	157150470	G	A	157150470	3	1	188	1	0	0	0	0	1	0	0	0	914	1203	42	3	1658	3	ARID1B	6	157150470	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	2739435	157150470	13964597	23	23555											
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159655130	159655130	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	FNDC1	NM_032532	exon11	c.C3586T	p.L1196L	GACCTTCTGTCTT	.	38	19	64	0	.	138	T	159655130	C	T	159655130	2	4	188	1	0	0	0	0	0	0	0	1	5968	912	32	3		3	FNDC1	6	159655130	Silent	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	2504660	159655130	11459937	24	23556											
PTPN12	5782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77240326	77240326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PTPN12	NM_002835	exon11	c.A902T	p.Y301F	AACTATATGAAAT	.	203	94	283	0	.	228	T	77240326	A	T	77240326	3	4	188	1	0	0	0	0	1	0	0	0	12781	449	16	4	944	4	PTPN12	7	77240326	Missense_Mutation	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10		77240326	81898337	25	23557											
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126086303	126086303	+	Missense_Mutation	SNP	G	G	A	rs139289550		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	GRM8	NM_000845	exon9	c.C2554T	p.R852C	TCTTGCGTTTTTG	.	112	48	155	0	G|1.000;A|0.000	581	A	126086303	G	A	126086303	3	1	188	1	0	0	0	0	1	0	0	0	6803	1145	40	1	230	1	GRM8	7	126086303	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	48845977	126086303	33052360	26	23558											
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	94748274	94748274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	RBM12B	NM_203390	exon3	c.A365G	p.Y122C	GAGCCATATCCAG	.	97	31	111	0	.	90	C	94748274	T	C	94748274	3	2	188	1	0	0	0	0	1	0	0	0	13114	1406	49	2	2644	2	RBM12B	8	94748274	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		94748274	51615748	27	23559											
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	32657339	32657339	+	In_Frame_Del	DEL	T	T	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CCDC73	NM_001008391	exon14	c.1088delA	p.X363X	AATTCATTTTTAA	.	69	38	119	0	.	91	-	32657339	T	-	32657339	7	5	188	1	0	1	0	1	0	0	0	0	2846	1493	52	0	2171	0	CCDC73	11	32657339	In_Frame_Del	DEL	T	TCGA-RC-A7SB-01A-21D-A34Z-10		32657339	102349177	28	23560											
ACAD8	27034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134131730	134131730	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ACAD8	NM_014384	exon9	c.T1038C	p.D346D	GAAGGATGCAGTG	.	25	13	61	0	.	90	C	134131730	T	C	134131730	2	2	188	1	0	0	0	0	0	0	0	1	110	1461	51	2		2	ACAD8	11	134131730	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	101474391	134131730	874786	29	23561											
TAPBPL	55080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6570035	6570035	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TAPBPL	NM_018009	exon6	c.T1222G	p.L408V	ACAGCCTTGGGAG	.	38	16	49	0	.	90	G	6570035	T	G	6570035	3	3	188	1	0	0	0	0	1	0	0	0	15550	1606	56	5	1244	5	TAPBPL	12	6570035	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		6570035	127281860	30	23562											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49425062	49425062	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MLL2	NM_003482	exon39	c.13426delA	p.T4476fs	GCCCAGTGCTGAG	.	42	20	54	0	.	612	-	49425062	T	-	49425062	7	5	188	1	0	1	0	1	0	0	0	0	9621	1696	59	0	3251	0	MLL2	12	49425062	Frame_Shift_Del	DEL	T	TCGA-RC-A7SB-01A-21D-A34Z-10	42855027	49425062	84426833	31	23563											
R3HDM2	22864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57663679	57663679	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	R3HDM2	NM_014925	exon13	c.T1401C	p.L467L	GGAGATAAGTGGG	.	63	18	69	0	.	92	G	57663679	A	G	57663679	2	3	188	1	0	0	0	0	0	0	0	1	12888	349	13	2		2	R3HDM2	12	57663679	Silent	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10	8238617	57663679	76188216	32	23564											
MYF6	4618	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81101780	81101780	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MYF6	NM_002469	exon1	c.G282A	p.R94R	TGACCGGCGAAAA	.	25	8	26	0	.	90	A	81101780	G	A	81101780	2	1	188	1	0	0	0	0	0	0	0	1	10028	1190	42	3		3	MYF6	12	81101780	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	23438101	81101780	52750115	33	23565											
PAH	5053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	103237549	103237549	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PAH	NM_000277	exon11	c.A1074G	p.L358L	CTCTGATAAGCAG	.	51	17	51	0	.	72	C	103237549	T	C	103237549	2	2	188	1	0	0	0	0	0	0	0	1	11394	1403	49	2		2	PAH	12	103237549	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	22135769	103237549	30614346	34	23566											
RPLP0	6175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	120636498	120636498	+	Silent	SNP	G	G	A	rs138718343		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	RPLP0	NM_053275	exon6	c.C510T	p.S170S	GGCTTCGCTGGCT	.	52	16	68	0	G|1.000;A|0.000	91	A	120636498	G	A	120636498	2	1	188	1	0	0	0	0	0	0	0	1	13604	1078	38	1		1	RPLP0	12	120636498	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	17398949	120636498	13215397	35	23567											
ALG5	29880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	37524129	37524129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ALG5	NM_013338	exon10	c.C925T	p.R309X	AATATCGAAGTCG	.	31	16	52	0	.	90	A	37524129	G	A	37524129	4	1	188	1	0	0	0	0	0	1	0	0	521	1066	37	1	53	1	ALG5	13	37524129	Nonsense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10		37524129	77645749	36	23568											
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58299074	58299074	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PCDH17	NM_001040429	exon4	c.G3126C	p.A1042A	CAAGGCGTGCATC	.	37	17	68	0	.	97	C	58299074	G	C	58299074	2	2	188	1	0	0	0	0	0	0	0	1	11512	1132	40	4		4	PCDH17	13	58299074	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	20774945	58299074	56870804	37	23569											
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	75884197	75884197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TBC1D4	NM_014832	exon14	c.A2474T	p.D825V	GGGTCATCCTCCC	.	60	30	94	0	.	95	A	75884197	T	A	75884197	3	1	188	1	0	0	0	0	1	0	0	0	15619	1435	50	4	1454	4	TBC1D4	13	75884197	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	17585123	75884197	39285681	38	23570											
ANGEL1	23357	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77275409	77275409	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ANGEL1	NM_015305	exon2	c.A642G	p.P214P	ATGATATGGTATT	.	37	9	39	0	.	93	C	77275409	T	C	77275409	2	2	188	1	0	0	0	0	0	0	0	1	608	1451	51	2		2	ANGEL1	14	77275409	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		77275409	30074131	39	23571											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889381	23889381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	.	NM_019066	exon1	c.G3509T	p.R1170M	ATTCGCCTGTACT	.	27	12	50	0	.	.	A	23889381	C	A	23889381	3	1	188	1	0	0	0	0	1	0	0	0	9189	681	24	3	244	3	MAGEL2	15	23889381	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10		23889381	78642011	40	23572											
NDNL2	56160	broad.mit.edu;mdanderson.org	37	15	29561699	29561699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NDNL2	NM_138704	exon1	c.G211T	p.A71S	CCTGGGCCCGGCG	.	14	7	20	0	.	90	A	29561699	C	A	29561699	3	1	188	1	0	0	0	0	1	0	0	0	10248	739	26	3	707	3	NDNL2	15	29561699	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	5672318	29561699	72969693	41	23573											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40584571	40584571	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PLCB2	NM_004573	exon22	c.G2400A	p.E800E	CTTCATCTCCAGG	.	32	12	43	0	.	275	T	40584571	C	T	40584571	2	4	188	1	0	0	0	0	0	0	0	1	12028	912	32	3		3	PLCB2	15	40584571	Silent	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	11022872	40584571	61946821	42	23574											
CAPN3	825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42698136	42698151	+	In_Frame_Del	DEL	ACCAAGGTAGGTGTGT	ACCAAGGTAGGTGTGT	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	ACCAAGGTAGGTGTGT	ACCAAGGTAGGTGTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CAPN3	NM_000070	exon15	c.1795_1800del	p.599_600del	AAAAAAACCAAGG	.	60	17	148	0	.	514	-	42698151	ACCAAGGTAGGTGTGT	-	42698136	7	5	188	1	0	1	0	1	0	0	0	0	2628	43	2	0	1905	0	CAPN3	15	42698136	In_Frame_Del	DEL	ACCAAGGTAGGTGTGT	TCGA-RC-A7SB-01A-21D-A34Z-10	2113565	42698136	59833256	43	23575											
THUMPD1	55623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20749100	20749100	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	THUMPD1	NM_017736	exon3	c.A585G	p.T195T	CTGAAATGTCCCT	.	187	60	268	1	.	90	C	20749100	T	C	20749100	2	2	188	1	0	0	0	0	0	0	0	1	15879	1451	51	2		2	THUMPD1	16	20749100	Silent	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		20749100	69605653	44	23576											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577509	7577509	+	Missense_Mutation	SNP	C	C	T	rs121912652		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	TP53,NS,carcinoma,0	TP53	NM_000546	exon7	c.G772A	p.E258K	AGTCTTCCAGTGT	.	24	18	67	1	.	70225	T	7577509	C	T	7577509	3	4	188	1	0	0	0	0	1	0	0	0	16378	864	30	3	518	3	TP53	17	7577509	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10		7577509	73617701	45	23577											
MRPL45	84311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36478418	36478418	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MRPL45	NM_032351	exon8	c.G861C	p.L287L	TCAGCTGAAACCA	.	41	20	51	0	.	90	C	36478418	G	C	36478418	2	2	188	1	0	0	0	0	0	0	0	1	9809	1277	45	4		4	MRPL45	17	36478418	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	28900909	36478418	44716792	46	23578											
IGFBP4	3487	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38610218	38610218	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	IGFBP4	NM_001552	exon3	c.G546A	p.L182L	GGCGCTGGAGCGG	.	17	6	29	0	.	522	A	38610218	G	A	38610218	2	1	188	1	0	0	0	0	0	0	0	1	7581	1335	47	3		3	IGFBP4	17	38610218	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	2131800	38610218	42584992	47	23579											
LPO	4025	broad.mit.edu;ucsc.edu	37	17	56332171	56332171	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	LPO	NM_001160102	exon7	c.857-1G>A	.	CTTTCAGGAGATT	.	33	4	49	0	.	91	A	56332171	G	A	56332171	5	1	188	1	0	0	0	0	0	0	1	0	8922	1014	35	3	1135	3	LPO	17	56332171	Splice_Site	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	17721953	56332171	24863039	48	23580											
DDX42	11325	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61882440	61882440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	DDX42	NM_203499	exon7	c.C631G	p.P211A	GACTATCCACCAT	.	180	15	144	2	.	230	G	61882440	C	G	61882440	3	3	188	1	0	0	0	0	1	0	0	0	4362	855	30	4	653	4	DDX42	17	61882440	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	5550269	61882440	19312770	49	23581											
FAM104A	84923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71208818	71208818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	.	NM_001098832	exon3	c.C383T	p.A128V	CCCACCGCGCAGA	.	88	29	105	0	.	.	A	71208818	G	A	71208818	3	1	188	1	0	0	0	0	1	0	0	0	5385	1101	38	1	248	1	FAM104A	17	71208818	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	9326378	71208818	9986392	50	23582											
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74085293	74085293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	EXOC7	NM_001145297	exon9	c.A1163T	p.E388V	TGGTGCTCGGGGA	.	35	16	40	0	.	90	A	74085293	T	A	74085293	3	1	188	1	0	0	0	0	1	0	0	0	5310	1551	54	4	1092	4	EXOC7	17	74085293	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	2876475	74085293	7109917	51	23583											
MIB1	57534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19359600	19359600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MIB1	NM_020774	exon6	c.A862T	p.I288F	TGTGGCATTGATG	.	149	54	180	0	.	526	T	19359600	A	T	19359600	3	4	188	1	0	0	0	0	1	0	0	0	9566	217	8	4	884	4	MIB1	18	19359600	Missense_Mutation	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10		19359600	58717648	52	23584											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63526260	63526260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CDH7	NM_004361	exon9	c.G1472T	p.C491F	CCGTCTGTGAAAA	.	127	49	164	0	.	94	T	63526260	G	T	63526260	3	4	188	1	0	0	0	0	1	0	0	0	3115	1377	48	3	1502	3	CDH7	18	63526260	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	44166660	63526260	14550988	53	23585											
HDGFRP2	0	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	4498350	4498350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	.	NM_032631	exon12	c.T1450C	p.F484L	ATCAAGTTTGCCC	.	10	4	26	0	.	.	C	4498350	T	C	4498350	3	2	188	1	0	0	0	0	1	0	0	0	7020	1725	60	2	1496	2	HDGFRP2	19	4498350	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10		4498350	54630633	54	23586											
ZNF208	7757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22170097	22170097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ZNF208	NM_007153	exon3	c.G147T	p.K49N	GTCTGGCTTAAAG	.	98	42	143	1	.	7	A	22170097	C	A	22170097	3	1	188	1	0	0	0	0	1	0	0	0	17763	796	28	3	3703	3	ZNF208	19	22170097	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	17671747	22170097	36958886	55	23587											
SIRT2	22933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39374291	39374291	+	Missense_Mutation	SNP	C	C	T	rs200953200		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	SIRT2	NM_012237	exon9	c.G607A	p.E203K	GGTATTCGTGCCG	.	36	15	64	0	.	226	T	39374291	C	T	39374291	3	4	188	1	0	0	0	0	1	0	0	0	14338	893	31	1	594	1	SIRT2	19	39374291	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	17204194	39374291	19754692	56	23588											
PLD3	23646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40872766	40872766	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PLD3	NM_012268	exon5	c.C189T	p.G63G	ATACGGCGACTTG	.	33	16	49	0	.	228	T	40872766	C	T	40872766	2	4	188	1	0	0	0	0	0	0	0	1	12047	755	27	1		1	PLD3	19	40872766	Silent	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	1498475	40872766	18256217	57	23589											
CEACAM8	1088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43098033	43098033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CEACAM8	NM_001816	exon2	c.G84T	p.W28C	CGGGTTCCAGAAG	.	44	19	42	0	.	91	A	43098033	C	A	43098033	3	1	188	1	0	0	0	0	1	0	0	0	3198	856	30	3	981	3	CEACAM8	19	43098033	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	2225267	43098033	16030950	58	23590											
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43762554	43762554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PSG9	NM_002784	exon5	c.A1043G	p.E348G	AGGTTTTCTCCTG	.	20	13	32	0	.	92	C	43762554	T	C	43762554	3	2	188	1	0	0	0	0	1	0	0	0	12662	1783	62	2	245	2	PSG9	19	43762554	Missense_Mutation	SNP	T	TCGA-RC-A7SB-01A-21D-A34Z-10	664521	43762554	15366429	59	23591											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53740390	53740390	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ZNF677	NM_182609	exon5	c.C1590G	p.L530L	TCTAGTGAGGTTT	.	157	68	229	0	.	91	C	53740390	G	C	53740390	2	2	188	1	0	0	0	0	0	0	0	1	18081	1277	45	4		4	ZNF677	19	53740390	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	9977836	53740390	5388593	60	23592											
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54307234	54307234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NLRP12	NM_144687	exon6	c.T2557A	p.C853S	CTGGGTGCCTCAG	.	30	10	50	0	.	211	T	54307234	G	T	54307234	3	4	188	1	0	0	0	0	1	0	0	0	10474	1319	46	3	648	3	NLRP12	19	54307234	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	566844	54307234	4821749	61	23593											
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56539102	56539102	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NLRP5	NM_153447	exon7	c.G1503A	p.L501L	AGGCCTGCACGCC	.	41	17	58	1	.	162	A	56539102	G	A	56539102	2	1	188	1	0	0	0	0	0	0	0	1	10480	1306	46	3		3	NLRP5	19	56539102	Silent	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10	2231868	56539102	2589881	62	23594											
TCF15	6939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	585251	585251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TCF15	NM_004609	exon2	c.G584T	p.R195L	GGCCCTCGAAGGG	.	80	36	82	0	.	90	A	585251	C	A	585251	3	1	188	1	0	0	0	0	1	0	0	0	15685	884	31	1	19	1	TCF15	20	585251	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10		585251	62440269	63	23595											
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	3209657	3209657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	SLC4A11	NM_001174090	exon17	c.G2148T	p.R716S	CACCAGCCTGCAG	.	21	10	18	0	.	91	A	3209657	C	A	3209657	3	1	188	1	0	0	0	0	1	0	0	0	14652	753	26	3	624	3	SLC4A11	20	3209657	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	2624406	3209657	59815863	64	23596											
USP25	29761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17238655	17238655	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	USP25	NM_013396	exon20	c.G2587C	p.E863Q	TTGGAGGAATATG	.	39	11	54	0	.	663	C	17238655	G	C	17238655	3	2	188	1	0	0	0	0	1	0	0	0	17053	1175	41	4	2665	4	USP25	21	17238655	Missense_Mutation	SNP	G	TCGA-RC-A7SB-01A-21D-A34Z-10		17238655	30891240	65	23597											
PNPLA4	8228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	7889813	7889813	+	Missense_Mutation	SNP	C	C	A	rs186093844	alternate_allele	TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PNPLA4	NM_004650	exon4	c.G352T	p.A118S	TTTTGGCGTTGGT	.	65	44	106	1	C|0.999;T|0.001	130	A	7889813	C	A	7889813	3	1	188	1	0	0	0	0	1	0	0	0	12167	768	27	1	425	1	PNPLA4	23	7889813	Missense_Mutation	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10		7889813	147380747	66	23598											
NLGN3	54413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70389592	70389592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NLGN3	NM_181303	exon8	c.A2192G	p.Y731C	TCTACTACCGTAA	.	23	20	36	0	.	131	G	70389592	A	G	70389592	3	3	188	1	0	0	0	0	1	0	0	0	10463	391	14	2	2218	2	NLGN3	23	70389592	Missense_Mutation	SNP	A	TCGA-RC-A7SB-01A-21D-A34Z-10	62499779	70389592	84880968	67	23599											
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140953292	140953292	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MAGEC3	NM_138702	exon2	c.C159T	p.A53A	TTCTGCCTTTCAT	.	30	23	59	0	.	555	T	140953292	C	T	140953292	2	4	188	1	0	0	0	0	0	0	0	1	9182	668	24	3		3	MAGEC3	23	140953292	Silent	SNP	C	TCGA-RC-A7SB-01A-21D-A34Z-10	70563700	140953292	14317268	68	23600											
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235673	33235673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1522	NM_020888	exon6	c.G893T	p.R298L	TTGACCGTGTCTA	.	37	17	36	0	.	90	T	33235673	G	T	33235673	3	4	189	1	0	0	0	0	1	0	0	0	8238	1145	40	1	915	1	KIAA1522	1	33235673	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		33235673	216014948	1	23601											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	39748038	39748038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MACF1	NM_012090	exon8	c.C702A	p.H234Q	CATTCACCGATAC	.	50	16	62	0	.	165	A	39748038	C	A	39748038	3	1	189	1	0	0	0	0	1	0	0	0	9144	506	18	3	724	3	MACF1	1	39748038	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	6512365	39748038	209502583	2	23602											
DIO1	1733	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54359901	54359901	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	DIO1	NM_001039715	exon1	c.A18G	p.P6P	CCAGCCAGGGCTG	.	68	19	102	2	.	90	G	54359901	A	G	54359901	2	3	189	1	0	0	0	0	0	0	0	1	4524	175	7	2		2	DIO1	1	54359901	Silent	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	14611863	54359901	194890720	3	23603											
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64643503	64643503	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ROR1	NM_005012	exon9	c.G1779T	p.L593L	TTTTCTGCACATT	.	48	19	56	0	.	1536	T	64643503	G	T	64643503	2	4	189	1	0	0	0	0	0	0	0	1	13526	1306	46	3		3	ROR1	1	64643503	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	10283602	64643503	184607118	4	23604											
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161011514	161011514	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USF1	NM_001276373	exon6	c.G399T	p.S133S	ACTCCCCGATGTG	.	48	28	53	0	.	516	A	161011514	C	A	161011514	2	1	189	1	0	0	0	0	0	0	0	1	17029	639	23	1		1	USF1	1	161011514	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	96368011	161011514	88239107	5	23605											
PCP4L1	654790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161254248	161254248	+	Silent	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001102566	exon3	c.A184C	p.R62R	CAGAAAAGGAAAA	.	164	53	215	1	.	.	C	161254248	A	C	161254248	2	2	189	1	0	0	0	0	0	0	0	1	11599	63	3	5		5	PCP4L1	1	161254248	Silent	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	242734	161254248	87996373	6	23606											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220406191	220406191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	RAB3GAP2	NM_012414	exon2	c.T130G	p.W44G	CTTCCCAGTCTGT	.	174	76	219	0	.	90	C	220406191	A	C	220406191	3	2	189	1	0	0	0	0	1	0	0	0	12936	188	7	5	4187	5	RAB3GAP2	1	220406191	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	59151943	220406191	28844430	7	23607											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1204797	1204797	+	Silent	SNP	G	G	T	rs141600263	alternate_allele	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	SNTG2,NS,carcinoma,+1	SNTG2	NM_018968	exon9	c.G600T	p.S200S	CCCATCGTCACCT	.	24	12	58	0	G|0.999;A|0.000	136	T	1204797	G	T	1204797	2	4	189	1	0	0	0	0	0	0	0	1	14875	1132	40	1		1	SNTG2	2	1204797	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		1204797	241994576	8	23608											
XIRP2	129446	bcgsc.ca;mdanderson.org	37	2	168103401	168103401	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	XIRP2	NM_152381	exon9	c.A5499G	p.K1833K	ACCCAAAGAAGAG	.	31	10	58	0	.	104	G	168103401	A	G	168103401	2	3	189	1	0	0	0	0	0	0	0	1	17427	69	3	2		2	XIRP2	2	168103401	Silent	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	166898604	168103401	75095972	9	23609											
ABCB11	8647	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169828460	169828460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCB11	NM_003742	exon14	c.T1535C	p.I512T	TCTGCAATGGTGG	.	78	29	105	1	.	139	G	169828460	A	G	169828460	3	3	189	1	0	0	0	0	1	0	0	0	42	101	4	2	2490	2	ABCB11	2	169828460	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	1725059	169828460	73370913	10	23610											
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175624301	175624301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CHRNA1	NM_001039523	exon2	c.A104C	p.Y35S	CTGCTGTAGTCTT	.	33	9	38	0	.	518	G	175624301	T	G	175624301	3	3	189	1	0	0	0	0	1	0	0	0	3381	1638	57	5	1380	5	CHRNA1	2	175624301	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	5795841	175624301	67575072	11	23611											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204009591	204009591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NBEAL1	NM_001114132	exon31	c.G5030T	p.C1677F	AATATTGTAATTC	.	81	29	103	0	.	92	T	204009591	G	T	204009591	3	4	189	1	0	0	0	0	1	0	0	0	10188	1377	48	3	5148	3	NBEAL1	2	204009591	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	28385290	204009591	39189782	12	23612											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219614829	219614829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTLL4	NM_014640	exon15	c.A2833G	p.I945V	GAGGATATCATTT	.	42	14	61	0	.	93	G	219614829	A	G	219614829	3	3	189	1	0	0	0	0	1	0	0	0	16726	449	16	2	2883	2	TTLL4	2	219614829	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	15605238	219614829	23584544	13	23613											
KIF1A	547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241664710	241664710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIF1A	NM_001244008	exon40	c.G4234A	p.G1412R	GGCTCCCACTGCC	.	14	6	30	0	.	91	T	241664710	C	T	241664710	3	4	189	1	0	0	0	0	1	0	0	0	8283	594	21	3	1181	3	KIF1A	2	241664710	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	22049881	241664710	1534663	14	23614											
ZCWPW2	152098	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	28520305	28520305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZCWPW2	NM_001040432	exon4	c.C493A	p.P165T	ATATAGCCAGAAA	.	162	57	147	1	.	24	A	28520305	C	A	28520305	3	1	189	1	0	0	0	0	1	0	0	0	17595	753	26	3	503	3	ZCWPW2	3	28520305	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		28520305	169502125	15	23615											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46000930	46000930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FYCO1	NM_024513	exon12	c.A3542G	p.D1181G	TTACAGTCGAGGC	.	48	14	89	0	.	91	C	46000930	T	C	46000930	3	2	189	1	0	0	0	0	1	0	0	0	6125	1667	58	2	922	2	FYCO1	3	46000930	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	17480625	46000930	152021500	16	23616											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62467525	62467525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CADPS	NM_003716	exon22	c.C3046A	p.P1016T	CATTGGGTAGGTT	.	110	34	164	0	.	281	T	62467525	G	T	62467525	3	4	189	1	0	0	0	0	1	0	0	0	2570	1261	44	3	1051	3	CADPS	3	62467525	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	16466595	62467525	135554905	17	23617											
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73453378	73453378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDZRN3	NM_015009	exon4	c.A1087C	p.T363P	CAAAGGTGATGTC	.	83	30	109	0	.	232	G	73453378	T	G	73453378	3	3	189	1	0	0	0	0	1	0	0	0	11709	1696	59	5	2141	5	PDZRN3	3	73453378	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	10985853	73453378	124569052	18	23618											
TMEM45A	55076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100275609	100275609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM45A	NM_018004	exon3	c.G196T	p.A66S	GGCATGGCTGGGG	.	91	36	132	1	.	93	T	100275609	G	T	100275609	3	4	189	1	0	0	0	0	1	0	0	0	16166	1203	42	3	202	3	TMEM45A	3	100275609	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	26822231	100275609	97746821	19	23619											
ALG1L2	644974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129811015	129811015	+	Missense_Mutation	SNP	C	C	T	rs183887858		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001136152	exon3	c.C203T	p.T68M	TGGTGACGCGTCT	.	70	25	133	0	C|0.999;T|0.001	.	T	129811015	C	T	129811015	3	4	189	1	0	0	0	0	1	0	0	0	518	536	19	1	213	1	ALG1L2	3	129811015	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	29535406	129811015	68211415	20	23620											
TMEM129	92305	broad.mit.edu;bcgsc.ca	37	4	1720290	1720298	+	In_Frame_Del	DEL	GGGGCCTGG	GGGGCCTGG	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	GGGGCCTGG	GGGGCCTGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM129	NM_001127266	exon2	c.261_269del	p.87_90del	GCCTCAGGGGCCT	.	23	8	43	0	.	68	-	1720298	GGGGCCTGG	-	1720290	7	5	189	1	0	1	0	1	0	0	0	0	16039	1000	35	0	831	0	TMEM129	4	1720290	In_Frame_Del	DEL	GGGGCCTGG	TCGA-RC-A7SF-01A-11D-A34Z-10		1720290	189433986	21	23621											
ATP10D	57205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47563023	47563023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ATP10D	NM_020453	exon14	c.A2599T	p.S867C	GAAACCAGCATTG	.	44	17	79	2	.	93	T	47563023	A	T	47563023	3	4	189	1	0	0	0	0	1	0	0	0	1118	188	7	4	2649	4	ATP10D	4	47563023	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	45842733	47563023	143591253	22	23622											
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77676213	77676213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHROOM3	NM_020859	exon7	c.T4577G	p.L1526R	AACCTCTTCCCCC	.	25	9	31	0	.	93	G	77676213	T	G	77676213	3	3	189	1	0	0	0	0	1	0	0	0	14295	1609	56	5	4603	5	SHROOM3	4	77676213	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	30113190	77676213	113478063	23	23623											
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	110925746	110925746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	EGF	NM_001963	exon22	c.G3259T	p.E1087X	GACACTGAGGATG	.	38	11	46	0	.	524	T	110925746	G	T	110925746	4	4	189	1	0	0	0	0	0	1	0	0	4962	1291	45	3	3345	3	EGF	4	110925746	Nonsense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	33249533	110925746	80228530	24	23624											
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166981307	166981307	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TLL1	NM_012464	exon15	c.G1974A	p.V658V	TTCTGTGAAGTTT	.	54	17	95	0	.	158	A	166981307	G	A	166981307	2	1	189	1	0	0	0	0	0	0	0	1	15942	1277	45	3		3	TLL1	4	166981307	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	56055561	166981307	24172969	25	23625											
SPCS3	60559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	177241334	177241334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPCS3	NM_021928	exon1	c.G107A	p.S36N	ACAGGAGCGTCCC	.	30	12	38	0	.	23	A	177241334	G	A	177241334	3	1	189	1	0	0	0	0	1	0	0	0	15024	971	34	3	109	3	SPCS3	4	177241334	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	10260027	177241334	13912942	26	23626											
NSD1	64324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562319	176562319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NSD1	NM_022455	exon2	c.T215G	p.L72R	TTCCACTGCGGAG	.	68	35	73	1	.	188	G	176562319	T	G	176562319	3	3	189	1	0	0	0	0	1	0	0	0	10669	1580	55	5	217	5	NSD1	5	176562319	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10		176562319	4352941	27	23627											
CDKN1A	1026	broad.mit.edu;bcgsc.ca	37	6	36651926	36651926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CDKN1A	NM_001220778	exon2	c.48delG	p.K16fs	CAGCAAGGCCTGC	.	19	7	44	0	.	872	-	36651926	G	-	36651926	7	5	189	1	0	1	0	1	0	0	0	0	3158	991	35	0	50	0	CDKN1A	6	36651926	Frame_Shift_Del	DEL	G	TCGA-RC-A7SF-01A-11D-A34Z-10		36651926	134463141	28	23628											
TMEM63B	55362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44119668	44119668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM63B	NM_018426	exon19	c.C1759T	p.R587C	CTGCTGCGCATCC	.	39	6	79	1	.	92	T	44119668	C	T	44119668	3	4	189	1	0	0	0	0	1	0	0	0	16188	768	27	1	1829	1	TMEM63B	6	44119668	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	7467742	44119668	126995399	29	23629											
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71243558	71243558	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FAM135A	NM_001105531	exon18	c.3377+1G>T	.	AATAAGGTATCTT	.	63	16	65	0	.	90	T	71243558	G	T	71243558	5	4	189	1	0	0	0	0	0	0	1	0	5448	1275	44	3	4106	3	FAM135A	6	71243558	Splice_Site	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	27123890	71243558	99871509	30	23630											
BVES	11149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105577315	105577315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	BVES	NM_001199563	exon3	c.A290G	p.N97S	ACAGAGTTCCAGA	.	78	31	105	1	.	90	C	105577315	T	C	105577315	3	2	189	1	0	0	0	0	1	0	0	0	1575	1725	60	2	816	2	BVES	6	105577315	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	34333757	105577315	65537752	31	23631											
USP42	84132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6185161	6185161	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USP42	NM_032172	exon10	c.T1005A	p.P335P	ATACCCTGAGTAT	.	74	21	119	1	.	659	A	6185161	T	A	6185161	2	1	189	1	0	0	0	0	0	0	0	1	17070	1567	55	4		4	USP42	7	6185161	Silent	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10		6185161	152953502	32	23632											
TMEM106B	54664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12269401	12269401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM106B	NM_001134232	exon5	c.C538T	p.R180C	AAGGCACGCTTAA	.	236	73	309	1	.	90	T	12269401	C	T	12269401	3	4	189	1	0	0	0	0	1	0	0	0	16018	536	19	1	552	1	TMEM106B	7	12269401	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	6084240	12269401	146869262	33	23633											
POR	5447	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75610852	75610853	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	.	.	.	p.I271K	ACTTCATCACCTG	.	23	5	26	0	.	.	AG	75610853	TC	AG	75610852	3	1	189	1	0	0	0	0	1	0	0	0	12257	1435	50	4	681	4	POR	7	75610852	Missense_Mutation	DNP	TC	TCGA-RC-A7SF-01A-11D-A34Z-10	63341451	75610852	83527811	34	23634											
PCLO	27445	broad.mit.edu;bcgsc.ca	37	7	82582627	82582636	+	Frame_Shift_Del	DEL	TCACTAAATT	TCACTAAATT	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	TCACTAAATT	TCACTAAATT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PCLO	NM_014510	exon5	c.7633_7642del	p.2545_2548del	CTGAAGTCACTAA	.	35	8	53	0	.	29	-	82582636	TCACTAAATT	-	82582627	7	5	189	1	0	1	0	1	0	0	0	0	11583	1667	58	0	7887	0	PCLO	7	82582627	Frame_Shift_Del	DEL	TCACTAAATT	TCGA-RC-A7SF-01A-11D-A34Z-10	6971775	82582627	76556036	35	23635											
TRIM56	81844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100732207	100732207	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TRIM56	NM_030961	exon3	c.C1614T	p.G538G	CAACGGCGACTAC	.	25	8	27	0	.	226	T	100732207	C	T	100732207	2	4	189	1	0	0	0	0	0	0	0	1	16527	755	27	1		1	TRIM56	7	100732207	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	18149580	100732207	58406456	36	23636											
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	22471762	22471762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1967	NM_021174	exon9	c.G862C	p.E288Q	GAAAAGGAGGCAG	.	23	15	70	0	.	92	C	22471762	G	C	22471762	3	2	189	1	0	0	0	0	1	0	0	0	8265	1175	41	4	892	4	KIAA1967	8	22471762	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		22471762	123892260	37	23637											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41552758	41552758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ANK1	NM_001142446	exon28	c.A3175G	p.K1059E	GCTCCTTCCACAC	.	21	17	43	0	.	716	C	41552758	T	C	41552758	3	2	189	1	0	0	0	0	1	0	0	0	620	1792	62	2	2983	2	ANK1	8	41552758	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	19080996	41552758	104811264	38	23638											
IL7	3574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79652259	79652259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IL7	NM_000880	exon3	c.G206T	p.R69I	ATATGTCTTTTAA	.	690	84	266	1	.	226	A	79652259	C	A	79652259	3	1	189	1	0	0	0	0	1	0	0	0	7704	913	32	3	343	3	IL7	8	79652259	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	38099501	79652259	66711763	39	23639											
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120431544	120431544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NOV	NM_002514	exon4	c.G736A	p.V246M	TGCATGGTGCGGC	.	84	18	24	0	.	228	A	120431544	G	A	120431544	3	1	189	1	0	0	0	0	1	0	0	0	10553	1261	44	3	750	3	NOV	8	120431544	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	40779285	120431544	25932478	40	23640											
ZHX2	22882	bcgsc.ca;mdanderson.org	37	8	123965871	123965871	+	Silent	SNP	C	C	T	rs186468091		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZHX2	NM_014943	exon3	c.C2121T	p.A707A	CGATGCCGTAGCA	.	68	52	21	1	C|0.999;T|0.000	227	T	123965871	C	T	123965871	2	4	189	1	0	0	0	0	0	0	0	1	17673	639	23	1		1	ZHX2	8	123965871	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	3534327	123965871	22398151	41	23641											
ZHX1	11244	ucsc.edu;bcgsc.ca	37	8	124265573	124265573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZHX1	NM_007222	exon3	c.G2614A	p.D872N	AGTCATCTGATTT	.	347	277	130	2	.	91	T	124265573	C	T	124265573	3	4	189	1	0	0	0	0	1	0	0	0	17672	913	32	3	11	3	ZHX1	8	124265573	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	299702	124265573	22098449	42	23642											
OR13D1	286365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457526	107457526	+	Missense_Mutation	SNP	C	C	T	rs182904893		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	OR13D1	NM_001004484	exon1	c.C824T	p.A275V	GTTCAGCGCACTC	.	114	19	150	1	C|0.999;T|0.000	70	T	107457526	C	T	107457526	3	4	189	1	0	0	0	0	1	0	0	0	10940	768	27	1	826	1	OR13D1	9	107457526	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		107457526	33755905	43	23643											
PRKCQ	5588	broad.mit.edu;bcgsc.ca	37	10	6521125	6521125	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKCQ	NM_006257	exon12	c.C1182A	p.V394V	CAGGAAGACCTAG	.	99	7	113	0	.	1380	T	6521125	G	T	6521125	2	4	189	1	0	0	0	0	0	0	0	1	12515	929	33	3		3	PRKCQ	10	6521125	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		6521125	129013622	44	23644											
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31134175	31134175	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZNF438	NM_001143768	exon7	c.G2202A	p.Q734Q	GCCATTCTGATGA	.	111	32	154	1	.	154	T	31134175	C	T	31134175	2	4	189	1	0	0	0	0	0	0	0	1	17907	912	32	3		3	ZNF438	10	31134175	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	24613050	31134175	104400572	45	23645											
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75013758	75013758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC18	NM_145170	exon28	c.T3341C	p.V1114A	AAGCCAACTGTTT	.	41	25	69	0	.	92	G	75013758	A	G	75013758	3	3	189	1	0	0	0	0	1	0	0	0	16682	43	2	2	28	2	TTC18	10	75013758	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	43879583	75013758	60520989	46	23646											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94267913	94267913	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IDE	NM_004969	exon8	c.T1110C	p.F370F	AAACATAAAACCT	.	111	41	170	0	.	92	G	94267913	A	G	94267913	2	3	189	1	0	0	0	0	0	0	0	1	7493	359	13	2		2	IDE	10	94267913	Silent	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	19254155	94267913	41266834	47	23647											
CEP55	55165	ucsc.edu;bcgsc.ca	37	10	95276895	95276895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CEP55	NM_001127182	exon6	c.G883A	p.E295K	CATCTGGAAGATG	.	109	49	155	2	.	90	A	95276895	G	A	95276895	3	1	189	1	0	0	0	0	1	0	0	0	3255	1175	41	3	901	3	CEP55	10	95276895	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	1008982	95276895	40257852	48	23648											
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111642256	111642256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	XPNPEP1	NM_001167604	exon10	c.C975T	p.L325L	TGGGGAGAGGTCA	.	41	18	59	1	.	94	A	111642256	G	A	111642256	2	1	189	1	0	0	0	0	0	0	0	1	17439	929	33	3		3	XPNPEP1	10	111642256	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	16365361	111642256	23892491	49	23649											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	592654	592654	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PHRF1	NM_020901	exon6	c.C600G	p.L200L	TTTGCTCTGCGAC	.	26	8	40	0	.	22	G	592654	C	G	592654	2	3	189	1	0	0	0	0	0	0	0	1	11861	900	32	4		4	PHRF1	11	592654	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		592654	134413862	50	23650											
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5530137	5530137	+	Missense_Mutation	SNP	G	G	A	rs201719446		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	UBQLN3,NS,carcinoma,0	UBQLN3	NM_017481	exon2	c.C652T	p.R218W	TCTGCCGCATAAT	.	50	17	64	1	G|0.999;A|0.000	93	A	5530137	G	A	5530137	3	1	189	1	0	0	0	0	1	0	0	0	16895	1086	38	1	1319	1	UBQLN3	11	5530137	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	4937483	5530137	129476379	51	23651											
FADD	8772	bcgsc.ca;mdanderson.org	37	11	70049785	70049785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FADD	NM_003824	exon1	c.G220T	p.D74Y	CGCCACGACCTGC	.	116	95	28	1	.	660	T	70049785	G	T	70049785	3	4	189	1	0	0	0	0	1	0	0	0	5364	1058	37	1	222	1	FADD	11	70049785	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	64519648	70049785	64956731	52	23652											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063483	76063483	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKRIR	NM_004705	exon5	c.G711A	p.Q237Q	TAGCATCTGCCTC	.	313	200	176	0	.	93	T	76063483	C	T	76063483	2	4	189	1	0	0	0	0	0	0	0	1	12526	912	32	3		3	PRKRIR	11	76063483	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	6013698	76063483	58943033	53	23653											
AQP11	282679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77301291	77301291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	AQP11	NM_173039	exon1	c.T254C	p.F85S	ACTTCTTCTCGCT	.	65	44	58	1	.	90	C	77301291	T	C	77301291	3	2	189	1	0	0	0	0	1	0	0	0	823	1783	62	2	256	2	AQP11	11	77301291	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	1237808	77301291	57705225	54	23654											
KRT6B	3854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52845422	52845422	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C441A	p.P147P	GTTGAGGGGAGTC	.	114	34	187	0	.	92	T	52845422	G	T	52845422	2	4	189	1	0	0	0	0	0	0	0	1	8481	1219	43	3		3	KRT6B	12	52845422	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		52845422	81006473	55	23655	151	2									
KRT6B	3854	broad.mit.edu;bcgsc.ca	37	12	52845423	52845423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C440T	p.P147L	TTGAGGGGAGTCA	.	117	36	187	1	.	92	A	52845423	G	A	52845423	3	1	189	1	0	0	0	0	1	0	0	0	8481	1232	43	3	1290	3	KRT6B	12	52845423	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	1	52845423	81006472	56	23656	151	2									
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57957422	57957422	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIF5A	NM_004984	exon3	c.T237C	p.N79N	CTACAATGGCACC	.	116	39	183	2	.	517	C	57957422	T	C	57957422	2	2	189	1	0	0	0	0	0	0	0	1	8305	1461	51	2		2	KIF5A	12	57957422	Silent	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	5111999	57957422	75894473	57	23657											
E2F7	144455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	77427753	77427753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	E2F7	NM_203394	exon8	c.A1193C	p.Q398P	CAGACTTGAATCT	.	67	36	113	0	.	228	G	77427753	T	G	77427753	3	3	189	1	0	0	0	0	1	0	0	0	4872	1812	63	5	1566	5	E2F7	12	77427753	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	19470331	77427753	56424142	58	23658											
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	80911669	80911669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPRY2	NM_005842	exon2	c.G172T	p.G58W	TAGGCCCCTCTGT	.	42	21	95	0	.	659	A	80911669	C	A	80911669	3	1	189	1	0	0	0	0	1	0	0	0	15105	623	22	3	779	3	SPRY2	13	80911669	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		80911669	34258209	59	23659											
IFI27L2	83982	ucsc.edu;bcgsc.ca	37	14	94594892	94594892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IFI27L2	NM_032036	exon3	c.G158C	p.G53A	GAAACACCACCCC	.	18	4	35	0	.	90	G	94594892	C	G	94594892	3	3	189	1	0	0	0	0	1	0	0	0	7514	507	18	4	242	4	IFI27L2	14	94594892	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		94594892	12754648	60	23660											
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42149449	42149449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPTBN5	NM_016642	exon51	c.C8503T	p.R2835W	GCAGCCGCCGGGC	.	19	5	34	0	.	91	A	42149449	G	A	42149449	3	1	189	1	0	0	0	0	1	0	0	0	15121	1086	38	1	2488	1	SPTBN5	15	42149449	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		42149449	60381943	61	23661											
LIPC	3990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58830682	58830682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LIPC	NM_000236	exon2	c.C239T	p.S80F	ACTCCTCCCTGCC	.	44	11	80	0	.	91	T	58830682	C	T	58830682	3	4	189	1	0	0	0	0	1	0	0	0	8820	855	30	3	245	3	LIPC	15	58830682	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	16681233	58830682	43700710	62	23662											
TPM1	7168	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63336290	63336290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TPM1	NM_001018005	exon2	c.A179G	p.Y60C	ACAAATACTCTGA	.	42	15	59	1	.	90	G	63336290	A	G	63336290	3	3	189	1	0	0	0	0	1	0	0	0	16402	391	14	2	315	2	TPM1	15	63336290	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	4505608	63336290	39195102	63	23663											
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85610299	85610299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.T298A	p.C100S	AGGGCATGTGAAA	.	41	17	61	0	.	94	A	85610299	T	A	85610299	3	1	189	1	0	0	0	0	1	0	0	0	11653	1464	51	4	308	4	PDE8A	15	85610299	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	22274009	85610299	16921093	64	23664	152	2									
PDE8A	5151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85610300	85610300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.G299T	p.C100F	GGGCATGTGAAAA	.	41	17	62	1	.	94	T	85610300	G	T	85610300	3	4	189	1	0	0	0	0	1	0	0	0	11653	1377	48	3	309	3	PDE8A	15	85610300	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	1	85610300	16921092	65	23665	152	2									
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69689669	69689669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NFAT5	NM_001113178	exon6	c.T1163C	p.V388A	TAGAAGTCGGCCT	.	23	15	67	0	.	90	C	69689669	T	C	69689669	3	2	189	1	0	0	0	0	1	0	0	0	10360	1667	58	2	1185	2	NFAT5	16	69689669	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10		69689669	20665084	66	23666											
CD68	968	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7483796	7483796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD68	NM_001251	exon3	c.T580C	p.S194P	GGCATCTCTGTAC	.	22	10	45	1	.	90	C	7483796	T	C	7483796	3	2	189	1	0	0	0	0	1	0	0	0	3030	1551	54	2	590	2	CD68	17	7483796	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10		7483796	73711414	67	23667											
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48745041	48745041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCC3	NM_003786	exon12	c.G1558A	p.G520S	AGGCAGGGTGAGC	.	29	11	38	0	.	93	A	48745041	G	A	48745041	3	1	189	1	0	0	0	0	1	0	0	0	54	1232	43	3	1604	3	ABCC3	17	48745041	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	41261245	48745041	32450169	68	23668											
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72540897	72540897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD300C	NM_006678	exon2	c.T251A	p.I84N	TCCCTGATGGACA	.	50	15	96	0	.	90	T	72540897	A	T	72540897	3	4	189	1	0	0	0	0	1	0	0	0	2997	333	12	4	435	4	CD300C	17	72540897	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	23795856	72540897	8654313	69	23669											
JUNB	3726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12902979	12902979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	JUNB	NM_002229	exon1	c.C394A	p.Q132K	GAGGAGCAGGAGG	.	33	16	35	0	.	846	A	12902979	C	A	12902979	3	1	189	1	0	0	0	0	1	0	0	0	7970	711	25	3	396	3	JUNB	19	12902979	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		12902979	46226004	70	23670											
LYL1	4066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13211948	13211948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LYL1	NM_005583	exon2	c.C38T	p.T13I	GTCATGGTGGGGC	.	37	10	35	0	.	658	A	13211948	G	A	13211948	3	1	189	1	0	0	0	0	1	0	0	0	9106	1261	44	3	816	3	LYL1	19	13211948	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	308969	13211948	45917035	71	23671											
CILP2	148113	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19651990	19651990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CILP2	NM_153221	exon4	c.C527T	p.P176L	CAAGCCCCGCTGG	.	22	9	20	0	.	91	T	19651990	C	T	19651990	3	4	189	1	0	0	0	0	1	0	0	0	3430	623	22	3	541	3	CILP2	19	19651990	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	6440042	19651990	39476993	72	23672											
ZNF708	7562	broad.mit.edu;mdanderson.org	37	19	21477158	21477158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZNF708	NM_021269	exon4	c.G610A	p.A204T	TAAAAGCTTTGCC	.	31	7	41	1	.	516	T	21477158	C	T	21477158	3	4	189	1	0	0	0	0	1	0	0	0	18109	797	28	3	1085	3	ZNF708	19	21477158	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	1825168	21477158	37651825	73	23673											
PRX	57716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40900384	40900384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRX	NM_181882	exon7	c.A3875T	p.Q1292L	GCCACCTGGTACT	.	14	5	26	0	.	92	A	40900384	T	A	40900384	3	1	189	1	0	0	0	0	1	0	0	0	12642	1580	55	4	514	4	PRX	19	40900384	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	19423226	40900384	18228599	74	23674											
SHKBP1	92799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41096160	41096160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHKBP1	NM_138392	exon16	c.G1600T	p.V534L	TGCTCCGTGCGCT	.	28	7	42	0	.	92	T	41096160	G	T	41096160	3	4	189	1	0	0	0	0	1	0	0	0	14284	1145	40	1	1662	1	SHKBP1	19	41096160	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	195776	41096160	18032823	75	23675											
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41594950	41594950	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CYP2A13	NM_000766	exon2	c.C297T	p.S99S	GTTCAGCGGGCGA	.	49	20	92	0	.	93	T	41594950	C	T	41594950	2	4	189	1	0	0	0	0	0	0	0	1	4161	767	27	1		1	CYP2A13	19	41594950	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	498790	41594950	17534033	76	23676											
CA11	770	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49143430	49143430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CA11	NM_001217	exon4	c.T393A	p.S131R	CAGTTCACTGAGT	.	39	17	48	1	.	90	T	49143430	A	T	49143430	3	4	189	1	0	0	0	0	1	0	0	0	2512	156	6	4	617	4	CA11	19	49143430	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	7548480	49143430	9985553	77	23677											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40979316	40979316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PTPRT	NM_007050	exon11	c.C1817A	p.T606N	GTGATGGTCGTGT	.	40	18	48	0	.	664	T	40979316	G	T	40979316	3	4	189	1	0	0	0	0	1	0	0	0	12812	1261	44	3	2653	3	PTPRT	20	40979316	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		40979316	22046204	78	23678											
CABIN1	23523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24573522	24573522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CABIN1	NM_001199281	exon36	c.G6256A	p.A2086T	GAGGCTGCGAGTG	.	19	9	27	0	.	94	A	24573522	G	A	24573522	3	1	189	1	0	0	0	0	1	0	0	0	2528	1319	46	3	6394	3	CABIN1	22	24573522	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10		24573522	26731044	79	23679											
SOX10	6663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38379513	38379513	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SOX10	NM_006941	exon2	c.C279A	p.R93R	GTTGACGCGCACG	.	28	15	67	1	.	650	T	38379513	G	T	38379513	2	4	189	1	0	0	0	0	0	0	0	1	14941	1074	38	1		1	SOX10	22	38379513	Silent	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	13805991	38379513	12925053	80	23680											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40060133	40060133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CACNA1I	NM_021096	exon20	c.C3635A	p.T1212K	TCTTCACGGCCAT	.	46	16	53	0	.	135	A	40060133	C	A	40060133	3	1	189	1	0	0	0	0	1	0	0	0	2546	536	19	1	3713	1	CACNA1I	22	40060133	Missense_Mutation	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10	1680620	40060133	11244433	81	23681											
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46677505	46677505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC38	NM_017931	exon7	c.A625G	p.I209V	TTATCTATTAACC	.	43	14	64	0	.	91	G	46677505	A	G	46677505	3	3	189	1	0	0	0	0	1	0	0	0	16703	449	16	2	651	2	TTC38	22	46677505	Missense_Mutation	SNP	A	TCGA-RC-A7SF-01A-11D-A34Z-10	6617372	46677505	4627061	82	23682											
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	9677338	9677338	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TBL1X	NM_001139466	exon14	c.C1287G	p.S429S	GGCATCCTGCTCG	.	52	33	93	0	.	131	G	9677338	C	G	9677338	2	3	189	1	0	0	0	0	0	0	0	1	15636	668	24	4		4	TBL1X	23	9677338	Silent	SNP	C	TCGA-RC-A7SF-01A-11D-A34Z-10		9677338	145593222	83	23683											
ITM2A	9452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78618536	78618536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ITM2A	NM_004867	exon3	c.C344T	p.A115V	ATGTCAGCCTCCT	.	69	54	110	1	.	131	A	78618536	G	A	78618536	3	1	189	1	0	0	0	0	1	0	0	0	7912	971	34	3	463	3	ITM2A	23	78618536	Missense_Mutation	SNP	G	TCGA-RC-A7SF-01A-11D-A34Z-10	68941198	78618536	76652024	84	23684											
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129813524	129813524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ENOX2	NM_182314	exon7	c.A539G	p.Y180C	GACAGATACAGGG	.	49	43	83	0	.	131	C	129813524	T	C	129813524	3	2	189	1	0	0	0	0	1	0	0	0	5127	1406	49	2	1333	2	ENOX2	23	129813524	Missense_Mutation	SNP	T	TCGA-RC-A7SF-01A-11D-A34Z-10	51194988	129813524	25457036	85	23685											
VAMP3	9341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7837247	7837247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	VAMP3	NM_004781	exon3	c.G100A	p.D34N	AACGTGGACAAGG	.	41	9	112	0	.	90	A	7837247	G	A	7837247	3	1	190	1	0	0	0	0	1	0	0	0	17111	1174	41	3	110	3	VAMP3	1	7837247	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10		7837247	241413374	1	23686											
GMEB1	10691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29040743	29040743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GMEB1	NM_006582	exon10	c.T1180C	p.S394P	AGCCCTTCTCCTC	.	70	19	146	0	.	90	C	29040743	T	C	29040743	3	2	190	1	0	0	0	0	1	0	0	0	6487	1783	62	2	1214	2	GMEB1	1	29040743	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	21203496	29040743	220209878	2	23687											
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38185617	38185617	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	EPHA10	NM_001099439	exon14	c.T2526C	p.F842F	CTCCCCAAAGGCC	.	49	28	96	0	.	1246	G	38185617	A	G	38185617	2	3	190	1	0	0	0	0	0	0	0	1	5166	127	5	2		2	EPHA10	1	38185617	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	9144874	38185617	211065004	3	23688											
HIAT1	64645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100542807	100542807	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HIAT1	NM_033055	exon9	c.A978G	p.A326A	GTTGGCATGGTAT	.	138	37	320	1	.	90	G	100542807	A	G	100542807	2	3	190	1	0	0	0	0	0	0	0	1	7097	204	8	2		2	HIAT1	1	100542807	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	62357190	100542807	148707814	4	23689											
NBPF10	100132406	broad.mit.edu;mdanderson.org	37	1	145365361	145365361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_001039703	exon80	c.C9986G	p.P3329R	CAACTCCTTCAGG	.	38	5	52	0	.	.	G	145365361	C	G	145365361	3	3	190	1	0	0	0	0	1	0	0	0	10193	681	24	4	10304	4	NBPF10	1	145365361	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	44822554	145365361	103885260	5	23690											
PSMD4	5710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151237944	151237944	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PSMD4	NM_002810	exon6	c.G513T	p.V171V	TCTGGTGACAGTG	.	104	35	214	1	.	90	T	151237944	G	T	151237944	2	4	190	1	0	0	0	0	0	0	0	1	12700	1277	45	3		3	PSMD4	1	151237944	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	5872583	151237944	98012677	6	23691											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153920974	153920974	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CRTC2	NM_181715	exon13	c.C1821T	p.H607H	GGAACAGTGGGTC	.	87	16	150	0	.	228	A	153920974	G	A	153920974	2	1	190	1	0	0	0	0	0	0	0	1	3900	1020	36	3		3	CRTC2	1	153920974	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	2683030	153920974	95329647	7	23692											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156100406	156100406	+	Splice_Site	SNP	A	A	G	rs113610699	alternate_allele	TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LMNA	NM_170707	exon2	c.357-2A>G	.	TTCTTTAGCAATA	.	49	14	89	0	.	228	G	156100406	A	G	156100406	5	3	190	1	0	0	0	0	0	0	1	0	8848	434	15	2	361	2	LMNA	1	156100406	Splice_Site	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	2179432	156100406	93150215	8	23693											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156616630	156616630	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	BCAN	NM_198427	exon3	c.G129A	p.A43A	CGACGCGCCACTG	.	54	8	109	0	.	516	A	156616630	G	A	156616630	2	1	190	1	0	0	0	0	0	0	0	1	1345	1074	38	1		1	BCAN	1	156616630	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	516224	156616630	92633991	9	23694											
HSPA6	3310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161494890	161494890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HSPA6	NM_002155	exon1	c.G442C	p.V148L	ATCACCGTGCCCG	.	64	13	108	0	.	226	C	161494890	G	C	161494890	3	2	190	1	0	0	0	0	1	0	0	0	7415	1145	40	4	444	4	HSPA6	1	161494890	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	4878260	161494890	87755731	10	23695											
TNR	7143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	175306706	175306707	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNR	NM_003285	exon19	c.3492_3493insT	p.L1164fs	CACTTGTAATTTC	.	46	15	100	0	.	324	A	175306707	-	A	175306706	7	5	190	1	0	1	1	0	0	0	0	0	16335	1635	57	0	604	0	TNR	1	175306706	Frame_Shift_Ins	INS	-	TCGA-RC-A7SK-01A-11D-A34Z-10	13811816	175306706	73943915	11	23696											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204380351	204380351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PPP1R15B	NM_032833	exon1	c.G189T	p.W63C	TTTCGTCCAGTAA	.	79	10	87	0	.	652	A	204380351	C	A	204380351	3	1	190	1	0	0	0	0	1	0	0	0	12364	856	30	3	1960	3	PPP1R15B	1	204380351	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	29073645	204380351	44870270	12	23697											
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207647181	207647181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CR2	NM_001006658	exon12	c.C2191T	p.L731F	CAAGAACTTCCAG	.	86	25	128	1	.	232	T	207647181	C	T	207647181	3	4	190	1	0	0	0	0	1	0	0	0	3842	565	20	3	2237	3	CR2	1	207647181	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	3266830	207647181	41603440	13	23698											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208219347	208219347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PLXNA2	NM_025179	exon18	c.A3371C	p.N1124T	ACATTGTTAAAGA	.	61	19	109	0	.	92	G	208219347	T	G	208219347	3	3	190	1	0	0	0	0	1	0	0	0	12120	1725	60	5	2373	5	PLXNA2	1	208219347	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	572166	208219347	41031274	14	23699											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	211451497	211451497	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RCOR3	NM_001136223	exon6	c.C555G	p.Y185X	ATATTACTATTCT	.	85	14	105	0	.	91	G	211451497	C	G	211451497	4	3	190	1	0	0	0	0	0	1	0	0	13184	576	20	4	577	4	RCOR3	1	211451497	Nonsense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	3232150	211451497	37799124	15	23700											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236751283	236751283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HEATR1	NM_018072	exon13	c.A1591G	p.I531V	CATCTATATTATC	.	122	20	239	0	.	93	C	236751283	T	C	236751283	3	2	190	1	0	0	0	0	1	0	0	0	7027	1406	49	2	4975	2	HEATR1	1	236751283	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	25299786	236751283	12499338	16	23701											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247014692	247014692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHCTF1	NM_015446	exon33	c.A4643G	p.N1548S	GAAAGATTCCTAG	.	127	43	235	0	.	97	C	247014692	T	C	247014692	3	2	190	1	0	0	0	0	1	0	0	0	408	1493	52	2	2200	2	AHCTF1	1	247014692	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	10263409	247014692	2235929	17	23702											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15523423	15523423	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NBAS	NM_015909	exon29	c.G3276A	p.E1092E	ATGAGACTCACTG	.	142	25	218	0	.	94	T	15523423	C	T	15523423	2	4	190	1	0	0	0	0	0	0	0	1	10186	564	20	3		3	NBAS	2	15523423	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10		15523423	227675950	18	23703											
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32891709	32891709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTC27	NM_017735	exon7	c.G813T	p.L271F	TGCTTTGGGAAAA	.	37	8	91	0	.	90	T	32891709	G	T	32891709	3	4	190	1	0	0	0	0	1	0	0	0	16692	1339	47	3	839	3	TTC27	2	32891709	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	17368286	32891709	210307664	19	23704											
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43922295	43922295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PLEKHH2	NM_172069	exon6	c.A434G	p.N145S	TGGAGAATCAGAA	.	266	28	503	0	.	92	G	43922295	A	G	43922295	3	3	190	1	0	0	0	0	1	0	0	0	12077	101	4	2	452	2	PLEKHH2	2	43922295	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	11030586	43922295	199277078	20	23705											
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48027047	48027047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MSH6	NM_000179	exon4	c.A1925G	p.Y642C	AAGAATATTTTAG	.	35	17	78	0	.	3014	G	48027047	A	G	48027047	3	3	190	1	0	0	0	0	1	0	0	0	9874	449	16	2	1939	2	MSH6	2	48027047	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	4104752	48027047	195172326	21	23706											
DYSF	8291	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71827927	71827927	+	Silent	SNP	G	G	A	rs139983909		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DYSF	NM_001130982	exon35	c.G3894A	p.P1298P	CCAGCCGTCGGGG	.	17	5	48	0	G|1.000;A|0.000	158	A	71827927	G	A	71827927	2	1	190	1	0	0	0	0	0	0	0	1	4859	1132	40	1		1	DYSF	2	71827927	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	23800880	71827927	171371446	22	23707											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84844030	84844030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DNAH6	NM_001370	exon23	c.A3496T	p.N1166Y	TTTCAAAACAATA	.	215	80	328	0	.	69	T	84844030	A	T	84844030	3	4	190	1	0	0	0	0	1	0	0	0	4605	14	1	4	3582	4	DNAH6	2	84844030	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	13016103	84844030	158355343	23	23708											
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	125192135	125192135	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CNTNAP5	NM_130773	exon5	c.A604T	p.K202X	ACTCTCAAAGATG	.	65	28	161	0	.	524	T	125192135	A	T	125192135	4	4	190	1	0	0	0	0	0	1	0	0	3650	131	5	4	622	4	CNTNAP5	2	125192135	Nonsense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	40348105	125192135	118007238	24	23709											
POTEE	445582	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	132020969	132020969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_001083538	exon15	c.A1941C	p.E647D	GCATGAAAATAGT	.	229	105	492	0	.	.	C	132020969	A	C	132020969	3	2	190	1	0	0	0	0	1	0	0	0	12264	11	1	5	1999	5	POTEE	2	132020969	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	6828834	132020969	111178404	25	23710											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160808016	160808016	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PLA2R1	NM_001195641	exon24	c.T3375A	p.T1125T	TTTGTAAGTTCTG	.	175	73	301	0	.	93	T	160808016	A	T	160808016	2	4	190	1	0	0	0	0	0	0	0	1	12010	59	3	4		4	PLA2R1	2	160808016	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	28787047	160808016	82391357	26	23711											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167319005	167319005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SCN7A	NM_002976	exon9	c.G977C	p.G326A	TTTATGCCAGCTT	.	49	26	108	0	.	67	G	167319005	C	G	167319005	3	3	190	1	0	0	0	0	1	0	0	0	13923	739	26	4	4139	4	SCN7A	2	167319005	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	6510989	167319005	75880368	27	23712											
HOXD1	3231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	177054752	177054752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HOXD1	NM_024501	exon2	c.A869G	p.E290G	AACGAGAAGGGCT	.	109	8	137	0	.	90	G	177054752	A	G	177054752	3	3	190	1	0	0	0	0	1	0	0	0	7318	246	9	2	875	2	HOXD1	2	177054752	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	9735747	177054752	66144621	28	23713											
FKBP7	51661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179343059	179343059	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FKBP7	NM_181342	exon1	c.A168G	p.L56L	GGCATTTAGTAGG	.	123	9	147	0	.	90	C	179343059	T	C	179343059	2	2	190	1	0	0	0	0	0	0	0	1	5913	1741	61	2		2	FKBP7	2	179343059	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	2288307	179343059	63856314	29	23714											
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190924808	190924808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MSTN	NM_005259	exon2	c.G727A	p.G243R	CTGGTCCTGGGAA	.	139	81	134	0	.	650	T	190924808	C	T	190924808	3	4	190	1	0	0	0	0	1	0	0	0	9893	690	24	3	408	3	MSTN	2	190924808	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	11581749	190924808	52274565	30	23715											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220333678	220333678	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SPEG	NM_005876	exon12	c.C3399T	p.L1133L	GGGGCTCTATGCG	.	30	14	68	0	.	383	T	220333678	C	T	220333678	2	4	190	1	0	0	0	0	0	0	0	1	15035	900	32	3		3	SPEG	2	220333678	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	29408870	220333678	22865695	31	23716											
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231936937	231936937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PSMD1	NM_002807	exon7	c.G689T	p.S230I	CTGTGAGTGATAT	.	80	11	189	0	.	92	T	231936937	G	T	231936937	3	4	190	1	0	0	0	0	1	0	0	0	12692	1029	36	3	715	3	PSMD1	2	231936937	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	11603259	231936937	11262436	32	23717	153	2									
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231936939	231936939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PSMD1	NM_002807	exon7	c.G691T	p.D231Y	GTGAGTGATATCT	.	80	12	190	0	.	92	T	231936939	G	T	231936939	3	4	190	1	0	0	0	0	1	0	0	0	12692	1290	45	3	717	3	PSMD1	2	231936939	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	2	231936939	11262434	33	23718	153	2									
JAGN1	84522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9934999	9934999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	JAGN1	NM_032492	exon2	c.T490C	p.Y164H	CAGTTGTACTACA	.	154	54	241	0	.	91	C	9934999	T	C	9934999	3	2	190	1	0	0	0	0	1	0	0	0	7936	1638	57	2	496	2	JAGN1	3	9934999	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10		9934999	188087431	34	23719											
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12195209	12195209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TIMP4	NM_003256	exon5	c.A481G	p.T161A	AGGTGGTGATCTA	.	44	12	56	0	.	226	C	12195209	T	C	12195209	3	2	190	1	0	0	0	0	1	0	0	0	15917	1696	59	2	197	2	TIMP4	3	12195209	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	2260210	12195209	185827221	35	23720											
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39230338	39230338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	XIRP1	NM_001198621	exon2	c.T599C	p.L200P	CGGTCCAGCGGCC	.	26	11	54	0	.	158	G	39230338	A	G	39230338	3	3	190	1	0	0	0	0	1	0	0	0	17426	188	7	2	4936	2	XIRP1	3	39230338	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	27035129	39230338	158792092	36	23721											
ALS2CL	259173	ucsc.edu;bcgsc.ca	37	3	46718422	46718422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ALS2CL	NM_001190707	exon17	c.G1848T	p.R616S	CAGGTCCCTGGGG	.	34	4	87	0	.	155	A	46718422	C	A	46718422	3	1	190	1	0	0	0	0	1	0	0	0	551	622	22	3	1053	3	ALS2CL	3	46718422	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	7488084	46718422	151304008	37	23722											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47098371	47098371	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SETD2	NM_014159	exon15	c.A6903G	p.T2301T	TGGACATGTCTGT	.	111	31	223	0	.	1273	C	47098371	T	C	47098371	2	2	190	1	0	0	0	0	0	0	0	1	14131	1451	51	2		2	SETD2	3	47098371	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	379949	47098371	150924059	38	23723											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108347953	108347953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DZIP3	NM_014648	exon8	c.T626C	p.I209T	AAGAAATTGGAGA	.	81	15	141	0	.	91	C	108347953	T	C	108347953	3	2	190	1	0	0	0	0	1	0	0	0	4865	1493	52	2	652	2	DZIP3	3	108347953	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	61249582	108347953	89674477	39	23724											
SLC15A2	6565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121641941	121641941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SLC15A2	NM_021082	exon10	c.C922A	p.P308T	TATATCCCATTGC	.	95	19	192	0	.	91	A	121641941	C	A	121641941	3	1	190	1	0	0	0	0	1	0	0	0	14399	623	22	3	960	3	SLC15A2	3	121641941	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	13293988	121641941	76380489	40	23725											
HEG1	57493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124732258	124732258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HEG1	NM_020733	exon6	c.C2165A	p.S722Y	GTTAAGGATACTG	.	57	19	112	0	.	70	T	124732258	G	T	124732258	3	4	190	1	0	0	0	0	1	0	0	0	7044	1174	41	3	2028	3	HEG1	3	124732258	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	3090317	124732258	73290172	41	23726											
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127702969	127702969	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KBTBD12	NM_207335	exon5	c.T1720C	p.L574L	GAAATATTGGAAC	.	94	18	177	0	.	23	C	127702969	T	C	127702969	2	2	190	1	0	0	0	0	0	0	0	1	7991	1490	52	2		2	KBTBD12	3	127702969	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	2970711	127702969	70319461	42	23727											
DNAJC19	131118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180704791	180704791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DNAJC19	NM_145261	exon4	c.A149G	p.Y50C	CCTCTATAATAGC	.	127	27	207	0	.	226	C	180704791	T	C	180704791	3	2	190	1	0	0	0	0	1	0	0	0	4638	1406	49	2	213	2	DNAJC19	3	180704791	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	53001822	180704791	17317639	43	23728											
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6862633	6862633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KIAA0232	NM_014743	exon7	c.A524G	p.Y175C	GGTACTATGAAGC	.	85	11	176	0	.	92	G	6862633	A	G	6862633	3	3	190	1	0	0	0	0	1	0	0	0	8163	449	16	2	542	2	KIAA0232	4	6862633	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		6862633	184291643	44	23729											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39448206	39448206	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KLB	NM_175737	exon4	c.G1860T	p.L620L	GGCCCTGAGGTAC	.	22	16	35	0	.	69	T	39448206	G	T	39448206	2	4	190	1	0	0	0	0	0	0	0	1	8332	1277	45	3		3	KLB	4	39448206	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	32585573	39448206	151706070	45	23730											
AREG	374	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	75312480	75312480	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AREG	NM_001657	exon2	c.T291A	p.I97I	CTATATTGTCGAT	.	170	55	516	0	.	946	A	75312480	T	A	75312480	2	1	190	1	0	0	0	0	0	0	0	1	843	1800	63	4		4	AREG	4	75312480	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	35864274	75312480	115841796	46	23731											
AREG	374	broad.mit.edu;mdanderson.org	37	4	75482235	75482235	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AREG	NM_001657	exon2	c.T291A	p.I97I	CTATATTGTCGAT	.	73	31	215	0	.	946	A	75482235	T	A	75482235	2	1	190	1	0	0	0	0	0	0	0	1	843	1800	63	4		4	AREG	4	75482235	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	169755	75482235	115672041	47	23732											
NAA11	84779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80246710	80246710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NAA11	NM_032693	exon1	c.T322C	p.S108P	GCAGAGACACGTA	.	23	7	65	0	.	24	G	80246710	A	G	80246710	3	3	190	1	0	0	0	0	1	0	0	0	10117	275	10	2	371	2	NAA11	4	80246710	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	4764475	80246710	110907566	48	23733											
KLHL8	57563	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88106860	88106860	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KLHL8	NM_020803	exon3	c.C308G	p.A103G	TGCTTGGCTTCAG	.	59	18	181	2	.	90	C	88106860	G	C	88106860	3	2	190	1	0	0	0	0	1	0	0	0	8395	1203	42	4	1586	4	KLHL8	4	88106860	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	7860150	88106860	103047416	49	23734											
UBE2D3	7323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103747665	103747665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	UBE2D3	NM_181886	exon2	c.A1G	p.M1V	GCGCCATAGTGTG	.	27	9	93	0	.	226	C	103747665	T	C	103747665	3	2	190	1	0	0	0	0	1	0	0	0	16847	1406	49	2	523	2	UBE2D3	4	103747665	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	15640805	103747665	87406611	50	23735											
CCRN4L	25819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	139965791	139965791	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CCRN4L	NM_012118	exon3	c.461-2A>T	.	CTTTTCAGCTCTT	.	10	5	45	0	.	91	T	139965791	A	T	139965791	5	4	190	1	0	0	0	0	0	0	1	0	2951	202	7	4	469	4	CCRN4L	4	139965791	Splice_Site	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	36218126	139965791	51188485	51	23736											
NAA15	80155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	140299908	140299908	+	Splice_Site	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NAA15	NM_057175	exon17	c.2057-2A>G	.	TTTTATAGAAAAG	.	67	22	207	0	.	92	G	140299908	A	G	140299908	5	3	190	1	0	0	0	0	0	0	1	0	10118	434	15	2	2121	2	NAA15	4	140299908	Splice_Site	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	334117	140299908	50854368	52	23737											
EDNRA	1909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148463734	148463734	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	EDNRA	NM_001957	exon8	c.C1248T	p.N416N	CCACAACACAGAC	.	18	6	58	0	.	586	T	148463734	C	T	148463734	2	4	190	1	0	0	0	0	0	0	0	1	4919	477	17	3		3	EDNRA	4	148463734	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	8163826	148463734	42690542	53	23738											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177071048	177071048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	WDR17	NM_170710	exon15	c.C2060A	p.T687N	TAGTCACTCCTGT	.	126	45	379	0	.	95	A	177071048	C	A	177071048	3	1	190	1	0	0	0	0	1	0	0	0	17274	565	20	3	2114	3	WDR17	4	177071048	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	28607314	177071048	14083228	54	23739											
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5462475	5462475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KIAA0947	NM_015325	exon13	c.G3028T	p.V1010L	GTGACTGTGTCAG	.	33	13	71	0	.	48	T	5462475	G	T	5462475	3	4	190	1	0	0	0	0	1	0	0	0	8202	1377	48	3	3078	3	KIAA0947	5	5462475	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10		5462475	175452785	55	23740											
GPR98	84059	broad.mit.edu;bcgsc.ca	37	5	89990498	89990498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	GPR98,NS,carcinoma,0	GPR98	NM_032119	exon33	c.A7925G	p.E2642G	CTGGAGAGATTCT	.	62	5	117	0	.	103	G	89990498	A	G	89990498	3	3	190	1	0	0	0	0	1	0	0	0	6721	304	11	2	8055	2	GPR98	5	89990498	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	84528023	89990498	90924762	56	23741											
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96116195	96116195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ERAP1	NM_001198541	exon18	c.T2602C	p.S868P	AAGATGAGCCAAG	.	21	9	63	0	.	70	G	96116195	A	G	96116195	3	3	190	1	0	0	0	0	1	0	0	0	5203	304	11	2	264	2	ERAP1	5	96116195	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	6125697	96116195	84799065	57	23742											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133997259	133997259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SEC24A	NM_001252231	exon2	c.A548G	p.N183S	TTCAAAATAGCTT	.	52	13	71	0	.	68	G	133997259	A	G	133997259	3	3	190	1	0	0	0	0	1	0	0	0	13994	101	4	2	554	2	SEC24A	5	133997259	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	37881064	133997259	46918001	58	23743											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	134039534	134039535	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SEC24A	NM_021982	exon16	c.2352_2353insT	p.G784fs	CGCTGGGTATGCA	.	146	59	259	0	.	68	T	134039535	-	T	134039534	7	5	190	1	0	1	1	0	0	0	0	0	13994	1248	44	0	2414	0	SEC24A	5	134039534	Frame_Shift_Ins	INS	-	TCGA-RC-A7SK-01A-11D-A34Z-10	42275	134039534	46875726	59	23744											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140209555	140209555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PCDHA6	NM_018909	exon1	c.T1879C	p.Y627H	GGGCTGTACACGG	.	29	9	62	0	.	92	C	140209555	T	C	140209555	3	2	190	1	0	0	0	0	1	0	0	0	11528	1638	57	2	1881	2	PCDHA6	5	140209555	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	6170021	140209555	40705705	60	23745											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222076	140222076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PCDHA8	NM_031856	exon1	c.G1170A	p.M390I	CCTGATGCCCCAT	.	85	39	218	0	.	92	A	140222076	G	A	140222076	3	1	190	1	0	0	0	0	1	0	0	0	11530	1319	46	3	1172	3	PCDHA8	5	140222076	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	12521	140222076	40693184	61	23746											
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158588365	158588365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RNF145	NM_001199380	exon10	c.G1625A	p.R542H	TCCCTGCGGAGAA	.	70	28	165	0	.	525	T	158588365	C	T	158588365	3	4	190	1	0	0	0	0	1	0	0	0	13447	768	27	1	464	1	RNF145	5	158588365	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	18366289	158588365	22326895	62	23747											
C1QTNF2	114898	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	159797621	159797621	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	C1QTNF2	NM_031908	exon1	c.G24T	p.P8P	GAGCGTCGGCCCC	.	27	4	50	0	.	91	A	159797621	C	A	159797621	2	1	190	1	0	0	0	0	0	0	0	1	1963	871	31	1		1	C1QTNF2	5	159797621	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	1209256	159797621	21117639	63	23748											
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159992727	159992727	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ATP10B	NM_025153	exon26	c.A4119G	p.T1373T	CTGTCCTGTGATA	.	49	20	83	0	.	72	C	159992727	T	C	159992727	2	2	190	1	0	0	0	0	0	0	0	1	1117	1567	55	2		2	ATP10B	5	159992727	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	195106	159992727	20922533	64	23749											
RGS14	10636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176793252	176793252	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RGS14	NM_006480	exon3	c.A142T	p.S48C	CTCCCCAGTGGTC	.	41	10	67	0	.	226	T	176793252	A	T	176793252	3	4	190	1	0	0	0	0	1	0	0	0	13297	188	7	4	152	4	RGS14	5	176793252	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	16800525	176793252	4122008	65	23750											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180048202	180048202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FLT4	NM_182925	exon14	c.G2071A	p.V691M	CGCTCACGTTCAC	.	56	25	131	0	.	1490	T	180048202	C	T	180048202	3	4	190	1	0	0	0	0	1	0	0	0	5944	536	19	1	2096	1	FLT4	5	180048202	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	3254950	180048202	867058	66	23751											
TMEM14C	51522	broad.mit.edu;ucsc.edu	37	6	10726176	10726176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TMEM14C	NM_001165258	exon4	c.G134T	p.G45V	TCTTTGGCAGTCT	.	28	4	69	0	.	90	T	10726176	G	T	10726176	3	4	190	1	0	0	0	0	1	0	0	0	16062	1203	42	3	144	3	TMEM14C	6	10726176	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10		10726176	160388891	67	23752											
DCDC2	51473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24205315	24205315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DCDC2	NM_001195610	exon9	c.A938C	p.K313T	CCAGCTTTGAAAA	.	131	16	207	0	.	91	G	24205315	T	G	24205315	3	3	190	1	0	0	0	0	1	0	0	0	4285	1841	64	5	504	5	DCDC2	6	24205315	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	13479139	24205315	146909752	68	23753											
ZKSCAN4	387032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28217606	28217606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZKSCAN4	NM_019110	exon2	c.G430C	p.V144L	CACCAACGGGAAC	.	44	9	81	0	.	91	G	28217606	C	G	28217606	3	3	190	1	0	0	0	0	1	0	0	0	17686	536	19	4	1223	4	ZKSCAN4	6	28217606	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	4012291	28217606	142897461	69	23754											
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29323799	29323799	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OR5V1	NM_030876	exon1	c.T174A	p.P58P	ATACATAGGTGTA	.	58	18	116	0	.	72	T	29323799	A	T	29323799	2	4	190	1	0	0	0	0	0	0	0	1	11184	407	15	4		4	OR5V1	6	29323799	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	1106193	29323799	141791268	70	23755											
OR2H1	26716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29430101	29430101	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OR2H1	NM_030883	exon3	c.C555A	p.L185L	TCGACTCTCCTGT	.	80	15	152	0	.	90	A	29430101	C	A	29430101	2	1	190	1	0	0	0	0	0	0	0	1	11001	900	32	3		3	OR2H1	6	29430101	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	106302	29430101	141684966	71	23756											
NRM	11270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30657906	30657906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NRM	NM_001270709	exon2	c.A248C	p.E83A	ACTCTTTCAGCTG	.	61	15	120	0	.	90	G	30657906	T	G	30657906	3	3	190	1	0	0	0	0	1	0	0	0	10657	1783	62	5	552	5	NRM	6	30657906	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	1227805	30657906	140457161	72	23757											
TNXB	7148	broad.mit.edu;bcgsc.ca	37	6	32012931	32012931	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNXB	NM_019105	exon32	c.G10773T	p.T3591T	CCCGTTCGTGTCC	.	255	13	402	0	.	90	A	32012931	C	A	32012931	2	1	190	1	0	0	0	0	0	0	0	1	16343	871	31	1		1	TNXB	6	32012931	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	1355025	32012931	139102136	73	23758											
PPP2R5D	5528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42975740	42975740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PPP2R5D	NM_006245	exon7	c.T794C	p.I265T	ATCGCATCTATGG	.	62	15	116	1	.	1082	C	42975740	T	C	42975740	3	2	190	1	0	0	0	0	1	0	0	0	12395	1435	50	2	820	2	PPP2R5D	6	42975740	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	10962809	42975740	128139327	74	23759											
CRISP2	7180	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	49668498	49668498	+	Splice_Site	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CRISP2	NM_001142435	exon5	c.67-1G>C	.	GGGATCCTAAAAG	.	60	9	108	1	.	91	G	49668498	C	G	49668498	5	3	190	1	0	0	0	0	0	0	1	0	3880	695	24	4	689	4	CRISP2	6	49668498	Splice_Site	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	6692758	49668498	121446569	75	23760											
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu	37	6	70408942	70408944	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LMBRD1	NM_018368	exon13	c.1329_1331del	p.443_444del	TCTATTAAGTAAT	.	46	14	46	0	.	91	-	70408944	AAG	-	70408942	7	5	190	1	0	1	0	1	0	0	0	0	8842	372	13	0	307	0	LMBRD1	6	70408942	In_Frame_Del	DEL	AAG	TCGA-RC-A7SK-01A-11D-A34Z-10	20740444	70408942	100706125	76	23761											
OSTM1	28962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108372287	108372287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OSTM1	NM_014028	exon4	c.T731C	p.L244P	TTCTCAAGTTCAT	.	103	14	264	0	.	68	G	108372287	A	G	108372287	3	3	190	1	0	0	0	0	1	0	0	0	11298	72	3	2	285	2	OSTM1	6	108372287	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	37963345	108372287	62742780	77	23762											
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132910065	132910065	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TAAR5	NM_003967	exon1	c.761delT	p.L254fs	ATGCCCAGGGTCT	.	35	12	62	0	.	91	-	132910065	A	-	132910065	7	5	190	1	0	1	0	1	0	0	0	0	15488	188	7	0	256	0	TAAR5	6	132910065	Frame_Shift_Del	DEL	A	TCGA-RC-A7SK-01A-11D-A34Z-10	24537778	132910065	38205002	78	23763											
PDE10A	10846	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	165801928	165801928	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PDE10A	NM_001130690	exon17	c.G1671T	p.L557L	CGCAATCAGCAGT	.	13	8	36	0	.	519	A	165801928	C	A	165801928	2	1	190	1	0	0	0	0	0	0	0	1	11630	813	29	3		3	PDE10A	6	165801928	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	32891863	165801928	5313139	79	23764											
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168445527	168445527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KIF25	NM_030615	exon9	c.G1006T	p.V336L	TTACTGGTGATTC	.	27	13	69	0	.	92	T	168445527	G	T	168445527	3	4	190	1	0	0	0	0	1	0	0	0	8293	1261	44	3	1036	3	KIF25	6	168445527	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	2643599	168445527	2669540	80	23765											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17382597	17382597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHR	NM_001621	exon11	c.A2456C	p.N819T	ACATAAATAACAC	.	91	25	168	0	.	227	C	17382597	A	C	17382597	3	2	190	1	0	0	0	0	1	0	0	0	416	101	4	5	2498	5	AHR	7	17382597	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		17382597	141756066	81	23766	154	3									
AHR	196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17382606	17382606	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHR	NM_001621	exon11	c.A2465C	p.Q822P	ACACTCAGACTAC	.	96	26	179	0	.	227	C	17382606	A	C	17382606	3	2	190	1	0	0	0	0	1	0	0	0	416	188	7	5	2507	5	AHR	7	17382606	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	9	17382606	141756057	82	23767	154	3									
AHR	196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	17382611	17382611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHR	NM_001621	exon11	c.A2470G	p.T824A	CAGACTACCACAC	.	100	26	184	0	.	227	G	17382611	A	G	17382611	3	3	190	1	0	0	0	0	1	0	0	0	416	391	14	2	2512	2	AHR	7	17382611	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	5	17382611	141756052	83	23768	154	3									
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	20691108	20691109	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	.	.	.	p.V467F	TGGAGTGGTTAGT	.	58	24	118	0	.	.	TT	20691109	GG	TT	20691108	3	4	190	1	0	0	0	0	1	0	0	0	44	1335	47	3	1444	3	ABCB5	7	20691108	Missense_Mutation	DNP	GG	TCGA-RC-A7SK-01A-11D-A34Z-10	3308497	20691108	138447555	84	23769											
NPSR1	387129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34867130	34867130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NPSR1	NM_207172	exon5	c.C596T	p.A199V	GCTGGGCCCTGTG	.	42	13	151	0	.	94	T	34867130	C	T	34867130	3	4	190	1	0	0	0	0	1	0	0	0	10600	739	26	3	614	3	NPSR1	7	34867130	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	14176022	34867130	124271533	85	23770											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44578553	44578553	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NPC1L1	NM_001101648	exon2	c.T1443C	p.S481S	GTAGAGACTGGTA	.	45	20	144	0	.	94	G	44578553	A	G	44578553	2	3	190	1	0	0	0	0	0	0	0	1	10571	272	10	2		2	NPC1L1	7	44578553	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	9711423	44578553	114560110	86	23771											
CCM2	83605	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	45108142	45108142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CCM2	NM_001029835	exon5	c.G636T	p.E212D	CGTGGAGGCATGC	.	12	4	64	0	.	90	T	45108142	G	T	45108142	3	4	190	1	0	0	0	0	1	0	0	0	2908	991	35	3	688	3	CCM2	7	45108142	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	529589	45108142	114030521	87	23772											
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86493597	86493597	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GRM3	NM_000840	exon6	c.2567-1G>T	.	TTTCCAGCCTCTG	.	75	15	119	0	.	528	T	86493597	G	T	86493597	5	4	190	1	0	0	0	0	0	0	1	0	6798	985	34	3	2584	3	GRM3	7	86493597	Splice_Site	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	41385455	86493597	72645066	88	23773											
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92122372	92122372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PEX1	NM_000466	exon20	c.T3102G	p.H1034Q	TGCTACATGCTGA	.	78	13	166	0	.	91	C	92122372	A	C	92122372	3	2	190	1	0	0	0	0	1	0	0	0	11735	214	8	5	769	5	PEX1	7	92122372	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	5628775	92122372	67016291	89	23774			1	22		2	2	16	A		7.607112e-05
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92122387	92122387	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PEX1	NM_000466	exon20	c.T3087C	p.D1029D	GTCAACATCATCT	.	81	12	165	0	.	91	G	92122387	A	G	92122387	2	3	190	1	0	0	0	0	0	0	0	1	11735	214	8	2		2	PEX1	7	92122387	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	15	92122387	67016276	90	23775			1	22		2	2	16	A		7.607112e-05
CHRNA2	1135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27324790	27324790	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CHRNA2	NM_000742	exon5	c.C405A	p.V135V	AGAAGGGACCCTG	.	17	5	99	0	.	91	T	27324790	G	T	27324790	2	4	190	1	0	0	0	0	0	0	0	1	3383	1161	41	3		3	CHRNA2	8	27324790	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10		27324790	119039232	91	23776											
NRG1	3084	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	31498106	31498106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NRG1	NM_013962	exon1	c.C606G	p.D202E	GGAGGACAGCAGG	.	8	3	55	0	.	525	G	31498106	C	G	31498106	3	3	190	1	0	0	0	0	1	0	0	0	10647	477	17	4	608	4	NRG1	8	31498106	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	4173316	31498106	114865916	92	23777											
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	93023275	93023275	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RUNX1T1	NM_001198679	exon5	c.A690T	p.E230D	AGTAGCTTCTTGC	.	126	6	150	0	.	1196	A	93023275	T	A	93023275	3	1	190	1	0	0	0	0	1	0	0	0	13747	1606	56	4	1333	4	RUNX1T1	8	93023275	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	61525169	93023275	53340747	93	23778											
NUDCD1	84955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	110283345	110283345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NUDCD1	NM_032869	exon8	c.T1188A	p.D396E	TTCTTTATCTGGA	.	243	24	158	0	.	227	T	110283345	A	T	110283345	3	4	190	1	0	0	0	0	1	0	0	0	10722	446	16	4	575	4	NUDCD1	8	110283345	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	17260070	110283345	36080677	94	23779											
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	119936661	119936661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNFRSF11B	NM_002546	exon5	c.A1158C	p.L386F	CATTTCTAAAAAT	.	230	18	148	0	.	651	G	119936661	T	G	119936661	3	3	190	1	0	0	0	0	1	0	0	0	16282	1519	53	5	51	5	TNFRSF11B	8	119936661	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	9653316	119936661	26427361	95	23780			2	23		3	3	228	N	T_C	6.592678e-07
TNFRSF11B	4982	broad.mit.edu;bcgsc.ca	37	8	119936683	119936683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNFRSF11B	NM_002546	exon5	c.A1136C	p.K379T	TACAATTTGTACA	.	284	21	178	1	.	651	G	119936683	T	G	119936683	3	3	190	1	0	0	0	0	1	0	0	0	16282	1841	64	5	73	5	TNFRSF11B	8	119936683	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	22	119936683	26427339	96	23781			2	23		3	3	228	N	T_C	6.592678e-07
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	119936888	119936888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNFRSF11B	NM_002546	exon5	c.G931C	p.D311H	CAATGTCTTCTGC	.	392	25	250	0	.	651	G	119936888	C	G	119936888	3	3	190	1	0	0	0	0	1	0	0	0	16282	913	32	4	278	4	TNFRSF11B	8	119936888	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	205	119936888	26427134	97	23782			2	23		3	3	228	N	T_C	6.592678e-07
MELK	9833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36677291	36677291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MELK	NM_014791	exon18	c.1913delA	p.Y638fs	GGGTTTACAAAAG	.	23	16	71	0	.	760	-	36677291	A	-	36677291	7	5	190	1	0	1	0	1	0	0	0	0	9470	391	14	0	1979	0	MELK	9	36677291	Frame_Shift_Del	DEL	A	TCGA-RC-A7SK-01A-11D-A34Z-10		36677291	104536140	98	23783	155	2									
MELK	9833	hgsc.bcm.edu;bcgsc.ca	37	9	36677293	36677293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MELK	NM_014791	exon18	c.A1915C	p.K639Q	GTTTACAAAAGAT	.	22	17	70	0	.	760	C	36677293	A	C	36677293	3	2	190	1	0	0	0	0	1	0	0	0	9470	131	5	5	1981	5	MELK	9	36677293	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	2	36677293	104536138	99	23784	155	2									
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117808755	117808755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNC	NM_002160	exon17	c.G5059A	p.E1687K	CAATTTCGTATTC	.	97	76	334	0	.	517	T	117808755	C	T	117808755	3	4	190	1	0	0	0	0	1	0	0	0	16267	893	31	1	1594	1	TNC	9	117808755	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	81131462	117808755	23404676	100	23785											
TTF1	7270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135277159	135277159	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTF1	NM_007344	exon2	c.T1050A	p.P350P	GCTCTCAGGCATG	.	63	44	170	0	.	94	T	135277159	A	T	135277159	2	4	190	1	0	0	0	0	0	0	0	1	16715	175	7	4		4	TTF1	9	135277159	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	17468404	135277159	5936272	101	23786											
C10orf113	387638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21435299	21435299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	C10orf113	NM_001177483	exon1	c.G139C	p.A47P	TTTCAGCCACACA	.	45	27	94	0	.	93	G	21435299	C	G	21435299	3	3	190	1	0	0	0	0	1	0	0	0	1584	739	26	4	371	4	C10orf113	10	21435299	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10		21435299	114099448	102	23787											
WAC	51322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	28884889	28884889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	WAC	NM_016628	exon7	c.T838C	p.F280L	AAATCATTTGATG	.	42	9	70	0	.	154	C	28884889	T	C	28884889	3	2	190	1	0	0	0	0	1	0	0	0	17244	1493	52	2	864	2	WAC	10	28884889	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	7449590	28884889	106649858	103	23788											
PARG	8505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51027418	51027418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PARG	NM_003631	exon18	c.G2899T	p.A967S	GGTCAGCGGTCTC	.	86	30	152	0	.	948	A	51027418	C	A	51027418	3	1	190	1	0	0	0	0	1	0	0	0	11448	768	27	1	35	1	PARG	10	51027418	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	22142529	51027418	84507329	104	23789											
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64148261	64148261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZNF365	NM_014951	exon3	c.C850G	p.L284V	GTAGAACTGGCGG	.	31	9	58	0	.	92	G	64148261	C	G	64148261	3	3	190	1	0	0	0	0	1	0	0	0	17866	564	20	4	856	4	ZNF365	10	64148261	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	13120843	64148261	71386486	105	23790											
AGAP11	119385	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	88768173	88768173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_133447	exon12	c.C164T	p.S55F	ATTCCTCCTCCAT	.	50	7	132	0	.	.	T	88768173	C	T	88768173	3	4	190	1	0	0	0	0	1	0	0	0	367	855	30	3	178	3	AGAP11	10	88768173	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	24619912	88768173	46766574	106	23791											
PPAPDC1A	196051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	122334705	122334705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PPAPDC1A	NM_001030059	exon6	c.G508A	p.E170K	TTCACCGAGAGTG	.	57	6	159	0	.	135	A	122334705	G	A	122334705	3	1	190	1	0	0	0	0	1	0	0	0	12293	1059	37	1	530	1	PPAPDC1A	10	122334705	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	33566532	122334705	13200042	107	23792											
ZNF195	7748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3381365	3381365	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZNF195	NM_001130520	exon6	c.G873A	p.E291E	AATGTTCTCAGGT	.	81	16	142	0	.	90	T	3381365	C	T	3381365	2	4	190	1	0	0	0	0	0	0	0	1	17755	912	32	3		3	ZNF195	11	3381365	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10		3381365	131625151	108	23793											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10613101	10613101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MRVI1	NM_130385	exon18	c.T2234C	p.L745S	TTTTCCAAAAGTG	.	35	12	87	0	.	25	G	10613101	A	G	10613101	3	3	190	1	0	0	0	0	1	0	0	0	9853	131	5	2	520	2	MRVI1	11	10613101	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	7231736	10613101	124393415	109	23794											
PIK3C2A	5286	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17191152	17191152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PIK3C2A	NM_002645	exon1	c.G137A	p.R46K	ACTTGTCTATCCT	.	167	35	280	1	.	1310	T	17191152	C	T	17191152	3	4	190	1	0	0	0	0	1	0	0	0	11909	913	32	3	5051	3	PIK3C2A	11	17191152	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	6578051	17191152	117815364	110	23795											
CEP57	9702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	95560987	95560987	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CEP57	NM_014679	exon9	c.A923C	p.Q308P	ATGTTCAGCTTGT	.	63	11	105	0	.	91	C	95560987	A	C	95560987	3	2	190	1	0	0	0	0	1	0	0	0	3256	188	7	5	957	5	CEP57	11	95560987	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	78369835	95560987	39445529	111	23796											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105804564	105804564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GRIA4	NM_001077243	exon14	c.A2163T	p.K721N	GGGCAAATTTGCC	.	74	12	154	0	.	230	T	105804564	A	T	105804564	3	4	190	1	0	0	0	0	1	0	0	0	6770	98	4	4	2250	4	GRIA4	11	105804564	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	10243577	105804564	29201952	112	23797											
TRAPPC4	51399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118889521	118889521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TRAPPC4	NM_016146	exon1	c.G16A	p.V6M	TTTAGTGTGTATG	.	61	12	91	0	.	90	A	118889521	G	A	118889521	3	1	190	1	0	0	0	0	1	0	0	0	16458	1377	48	3	18	3	TRAPPC4	11	118889521	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	13084957	118889521	16116995	113	23798											
PANX3	116337	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	124487191	124487191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PANX3	NM_052959	exon3	c.G346T	p.A116S	CTGCTGGCCCTGG	.	20	7	30	0	.	68	T	124487191	G	T	124487191	3	4	190	1	0	0	0	0	1	0	0	0	11422	1203	42	3	356	3	PANX3	11	124487191	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	5597670	124487191	10519325	114	23799											
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10584707	10584707	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KLRC2	NM_002260	exon5	c.T582C	p.H194H	TTACTTATGTTTG	.	157	24	377	0	.	514	G	10584707	A	G	10584707	2	3	190	1	0	0	0	0	0	0	0	1	8416	446	16	2		2	KLRC2	12	10584707	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		10584707	123267188	115	23800											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26647155	26647155	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ITPR2	NM_002223	exon39	c.T5301C	p.N1767N	TCTGTCATTTTTG	.	22	10	91	0	.	542	G	26647155	A	G	26647155	2	3	190	1	0	0	0	0	0	0	0	1	7921	214	8	2		2	ITPR2	12	26647155	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	16062448	26647155	107204740	116	23801											
MLL2	8085	broad.mit.edu;mdanderson.org	37	12	49431342	49431342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MLL2	NM_003482	exon34	c.T9797A	p.L3266H	GCTGAAAGCTGCT	.	16	3	56	0	.	612	T	49431342	A	T	49431342	3	4	190	1	0	0	0	0	1	0	0	0	9621	72	3	4	6900	4	MLL2	12	49431342	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	22784187	49431342	84420553	117	23802											
KRT18	3875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53345925	53345925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KRT18	NM_000224	exon6	c.T971A	p.L324Q	ACAGCCTGAGGGA	.	15	6	39	0	.	91	A	53345925	T	A	53345925	3	1	190	1	0	0	0	0	1	0	0	0	8455	1580	55	4	993	4	KRT18	12	53345925	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	3914583	53345925	80505970	118	23803											
MARS	4141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57910031	57910031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MARS	NM_004990	exon20	c.A2467C	p.K823Q	CAGGCAAAAACGT	.	65	34	167	0	.	654	C	57910031	A	C	57910031	3	2	190	1	0	0	0	0	1	0	0	0	9316	15	1	5	2545	5	MARS	12	57910031	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	4564106	57910031	75941864	119	23804											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57910051	57910051	+	Silent	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MARS	NM_004990	exon20	c.A2487C	p.A829A	GCCAGCAGTTGTA	.	67	35	161	0	.	654	C	57910051	A	C	57910051	2	2	190	1	0	0	0	0	0	0	0	1	9316	175	7	5		5	MARS	12	57910051	Silent	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	20	57910051	75941844	120	23805											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	67699601	67699602	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CAND1	NM_018448	exon10	c.2153_2154insT	p.T718fs	TTACCACTTTGGC	.	54	32	108	0	.	516	T	67699602	-	T	67699601	7	5	190	1	0	1	1	0	0	0	0	0	2615	565	20	0	2191	0	CAND1	12	67699601	Frame_Shift_Ins	INS	-	TCGA-RC-A7SK-01A-11D-A34Z-10	9789550	67699601	66152294	121	23806											
PHLDA1	22822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	76425490	76425490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PHLDA1	NM_007350	exon1	c.T32G	p.L11W	AGCTCCAAGAGGC	.	36	18	70	0	.	90	C	76425490	A	C	76425490	3	2	190	1	0	0	0	0	1	0	0	0	11848	131	5	5	1177	5	PHLDA1	12	76425490	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	8725889	76425490	57426405	122	23807											
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	89992431	89992431	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ATP2B1	NM_001001323	exon20	c.A3441G	p.V1147V	ATTTGTTACATCA	.	50	5	106	0	.	516	C	89992431	T	C	89992431	2	2	190	1	0	0	0	0	0	0	0	1	1139	1741	61	2		2	ATP2B1	12	89992431	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	13566941	89992431	43859464	123	23808											
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95451647	95451647	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NR2C1	NM_001032287	exon6	c.A552G	p.Q184Q	TTCACATTGGACA	.	75	20	135	0	.	187	C	95451647	T	C	95451647	2	2	190	1	0	0	0	0	0	0	0	1	10622	1490	52	2		2	NR2C1	12	95451647	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	5459216	95451647	38400248	124	23809											
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99638191	99638191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_152788	exon14	c.T2348C	p.I783T	TTGTCAATCTGTA	.	61	9	104	0	.	.	G	99638191	A	G	99638191	3	3	190	1	0	0	0	0	1	0	0	0	689	115	4	2	1738	2	ANKS1B	12	99638191	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	4186544	99638191	34213704	125	23810											
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99793570	99793570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_152788	exon12	c.T1595C	p.I532T	GACACAATGGATG	.	75	14	125	0	.	.	G	99793570	A	G	99793570	3	3	190	1	0	0	0	0	1	0	0	0	689	101	4	2	2499	2	ANKS1B	12	99793570	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	155379	99793570	34058325	126	23811											
SPIC	121599	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101873452	101873452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SPIC	.	.	.	.	CCTGTCTATAATT	.	41	14	93	0	.	227	C	101873452	T	C	101873452	3	2	190	1	0	0	0	0	1	0	0	0	15050	1522	53	2	194	2	SPIC	12	101873452	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	2079882	101873452	31978443	127	23812											
TAOK3	51347	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118636888	118636888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TAOK3	NM_016281	exon13	c.A1162G	p.I388V	AATTGATTGTGCT	.	57	13	130	1	.	933	C	118636888	T	C	118636888	3	2	190	1	0	0	0	0	1	0	0	0	15546	1493	52	2	1570	2	TAOK3	12	118636888	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	16763436	118636888	15215007	128	23813											
ATP6V0A2	23545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124229432	124229432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ATP6V0A2	NM_012463	exon13	c.C1518A	p.D506E	CAGTGACAGCGTC	.	40	17	106	0	.	92	A	124229432	C	A	124229432	3	1	190	1	0	0	0	0	1	0	0	0	1169	477	17	3	1568	3	ATP6V0A2	12	124229432	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	5592544	124229432	9622463	129	23814											
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23901921	23901921	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	MYH7,NS,carcinoma,-2	MYH7	NM_000257	exon5	c.G429A	p.R143R	CTTGCCCCGGTAG	.	13	5	58	0	.	94	T	23901921	C	T	23901921	2	4	190	1	0	0	0	0	0	0	0	1	10039	610	22	3		3	MYH7	14	23901921	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10		23901921	83447619	130	23815											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36041819	36041819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RALGAPA1	NM_194301	exon37	c.A5797G	p.I1933V	GATATATTACAAT	.	31	11	82	0	.	138	C	36041819	T	C	36041819	3	2	190	1	0	0	0	0	1	0	0	0	13013	1493	52	2	482	2	RALGAPA1	14	36041819	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	12139898	36041819	71307721	131	23816											
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56078888	56078888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KTN1	NM_004986	exon2	c.A122G	p.Q41R	CAAAACAGAAAAG	.	98	33	212	0	.	1147	G	56078888	A	G	56078888	3	3	190	1	0	0	0	0	1	0	0	0	8585	188	7	2	124	2	KTN1	14	56078888	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	20037069	56078888	51270652	132	23817											
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78198864	78198864	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SNW1	NM_012245	exon9	c.C855T	p.A285A	CAATTTGGCGAAA	.	35	17	106	0	.	187	A	78198864	G	A	78198864	2	1	190	1	0	0	0	0	0	0	0	1	14879	1335	47	3		3	SNW1	14	78198864	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	22119976	78198864	29150676	133	23818											
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89034417	89034418	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	.	.	.	p.A39S	GATGGTGGCCAAC	.	51	11	158	0	.	.	TT	89034418	GG	TT	89034417	3	4	190	1	0	0	0	0	1	0	0	0	17563	1335	47	3	124	3	ZC3H14	14	89034417	Missense_Mutation	DNP	GG	TCGA-RC-A7SK-01A-11D-A34Z-10	10835553	89034417	18315123	134	23819											
DYNC1H1	1778	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	102463601	102463601	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DYNC1H1	NM_001376	exon16	c.A3794C	p.K1265T	AGACCAAGCCTGT	.	19	7	41	0	.	98	C	102463601	A	C	102463601	3	2	190	1	0	0	0	0	1	0	0	0	4841	72	3	5	3856	5	DYNC1H1	14	102463601	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	13429184	102463601	4885939	135	23820											
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40321621	40321621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	EIF2AK4	NM_001013703	exon34	c.A4517G	p.N1506S	CCGATAATCTTGC	.	65	19	135	0	.	757	G	40321621	A	G	40321621	3	3	190	1	0	0	0	0	1	0	0	0	4999	101	4	2	4651	2	EIF2AK4	15	40321621	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		40321621	62209771	136	23821											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48808530	48808530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FBN1	NM_000138	exon11	c.A1177G	p.M393V	TTACCATAGGAAC	.	14	4	27	0	.	92	C	48808530	T	C	48808530	3	2	190	1	0	0	0	0	1	0	0	0	5702	1406	49	2	7662	2	FBN1	15	48808530	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	8486909	48808530	53722862	137	23822											
PGPEP1L	145814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99512764	99512764	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_001102612	exon4	c.G261T	p.V87V	TAGGCACACGCCG	.	45	17	58	0	.	.	A	99512764	C	A	99512764	2	1	190	1	0	0	0	0	0	0	0	1	11804	465	17	3		3	PGPEP1L	15	99512764	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	50704234	99512764	3018628	138	23823											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15931900	15931900	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MYH11	NM_001040114	exon2	c.G210T	p.T70T	CCCAACCGTGACC	.	53	12	103	0	.	666	A	15931900	C	A	15931900	2	1	190	1	0	0	0	0	0	0	0	1	10031	639	23	1		1	MYH11	16	15931900	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10		15931900	74422853	139	23824											
FHOD1	29109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67267989	67267989	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FHOD1	NM_013241	exon13	c.C1617A	p.L539L	AATAGAGAGCCTG	.	30	10	65	0	.	221	T	67267989	G	T	67267989	2	4	190	1	0	0	0	0	0	0	0	1	5882	929	33	3		3	FHOD1	16	67267989	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	51336089	67267989	23086764	140	23825											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71772938	71772938	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AP1G1	NM_001030007	exon22	c.T2184G	p.N728K	GTTGGTATTTGAC	.	159	61	325	0	.	92	C	71772938	A	C	71772938	3	2	190	1	0	0	0	0	1	0	0	0	732	446	16	5	305	5	AP1G1	16	71772938	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	4504949	71772938	18581815	141	23826											
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83994227	83994227	+	Silent	SNP	C	C	T	rs201580564	alternate_allele	TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OSGIN1	NM_182981	exon4	c.C258T	p.A86A	CGTGGCCCTGCTC	.	20	10	44	0	C|0.999;G|0.001	68	T	83994227	C	T	83994227	2	4	190	1	0	0	0	0	0	0	0	1	11289	610	22	3		3	OSGIN1	16	83994227	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	12221289	83994227	6360526	142	23827											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	84230532	84230532	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ADAD2	NM_139174	exon11	c.C1950T	p.G650G	GCAGGGCCTGGGG	.	58	16	97	0	.	68	T	84230532	C	T	84230532	2	4	190	1	0	0	0	0	0	0	0	1	232	726	26	3		3	ADAD2	16	84230532	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	236305	84230532	6124221	143	23828											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578410	7578410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	TP53,cerebellum,primitive_neuroectodermal_tumour-medulloblastoma,+1	TP53	NM_000546	exon5	c.A520T	p.R174W	AGCGCCTCACAAC	.	28	19	86	0	.	70225	A	7578410	T	A	7578410	3	1	190	1	0	0	0	0	1	0	0	0	16378	1550	54	4	778	4	TP53	17	7578410	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10		7578410	73616800	144	23829											
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39017949	39017949	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KRT12	NM_000223	exon8	c.C1449G	p.V483V	AGATGAGACCACC	.	91	21	204	0	.	91	C	39017949	G	C	39017949	2	2	190	1	0	0	0	0	0	0	0	1	8449	929	33	4		4	KRT12	17	39017949	Silent	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	31439539	39017949	42177261	145	23830											
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42476641	42476641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GPATCH8	NM_001002909	exon8	c.A2804G	p.Y935C	AGGCTATAGTCAT	.	101	17	181	0	.	94	C	42476641	T	C	42476641	3	2	190	1	0	0	0	0	1	0	0	0	6594	1406	49	2	1708	2	GPATCH8	17	42476641	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	3458692	42476641	38718569	146	23831											
SMARCD2	6603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61914891	61914891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SMARCD2	NM_001098426	exon2	c.G311A	p.R104Q	CCAGGTCGAAGCG	.	39	17	70	0	.	227	T	61914891	C	T	61914891	3	4	190	1	0	0	0	0	1	0	0	0	14778	884	31	1	1332	1	SMARCD2	17	61914891	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	19438250	61914891	19280319	147	23832											
HGS	9146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79663472	79663472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HGS	NM_004712	exon16	c.G1479T	p.E493D	CCGGGAGAAGCTT	.	20	11	34	0	.	91	T	79663472	G	T	79663472	3	4	190	1	0	0	0	0	1	0	0	0	7087	933	33	3	1541	3	HGS	17	79663472	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10	17748581	79663472	1531738	148	23833	156	2									
HGS	9146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	79663473	79663473	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HGS	NM_004712	exon16	c.A1480T	p.K494X	CGGGAGAAGCTTC	.	20	10	33	0	.	91	T	79663473	A	T	79663473	4	4	190	1	0	0	0	0	0	1	0	0	7087	247	9	4	1542	4	HGS	17	79663473	Nonsense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	1	79663473	1531737	149	23834	156	2									
THEG	51298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	367179	367179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	THEG	NM_016585	exon7	c.C799T	p.R267W	GGATCCGCGAGCT	.	40	11	127	0	.	91	A	367179	G	A	367179	3	1	190	1	0	0	0	0	1	0	0	0	15854	1086	38	1	348	1	THEG	19	367179	Missense_Mutation	SNP	G	TCGA-RC-A7SK-01A-11D-A34Z-10		367179	58761804	150	23835											
RAD23A	5886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13056794	13056794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RAD23A	NM_005053	exon1	c.A32C	p.Q11P	CGCTGCAGCAGCA	.	27	12	75	0	.	227	C	13056794	A	C	13056794	3	2	190	1	0	0	0	0	1	0	0	0	12982	188	7	5	34	5	RAD23A	19	13056794	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	12689615	13056794	46072189	151	23836	157	2									
RAD23A	5886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13056800	13056800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RAD23A	NM_005053	exon1	c.A38C	p.Q13P	AGCAGCAGACCTT	.	24	11	72	0	.	227	C	13056800	A	C	13056800	3	2	190	1	0	0	0	0	1	0	0	0	12982	188	7	5	40	5	RAD23A	19	13056800	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	6	13056800	46072183	152	23837	157	2									
GDF15	9518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18499150	18499150	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GDF15	NM_004864	exon2	c.C332G	p.P111R	CCCTTCCCGAGGG	.	57	11	118	0	.	650	G	18499150	C	G	18499150	3	3	190	1	0	0	0	0	1	0	0	0	6313	623	22	4	338	4	GDF15	19	18499150	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	5442350	18499150	40629833	153	23838											
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	53762414	53762414	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	VN1R2	NM_173856	exon1	c.T786A	p.Y262X	AGTATATGCAGCA	.	71	24	124	0	.	90	A	53762414	T	A	53762414	4	1	190	1	0	0	0	0	0	1	0	0	17176	1471	51	4	788	4	VN1R2	19	53762414	Nonsense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	35263264	53762414	5366569	154	23839											
VSTM1	284415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54554674	54554674	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	VSTM1	NM_198481	exon4	c.A384T	p.S128S	TTTCATTGAGGGA	.	61	26	150	0	.	90	A	54554674	T	A	54554674	2	1	190	1	0	0	0	0	0	0	0	1	17225	1799	63	4		4	VSTM1	19	54554674	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	792260	54554674	4574309	155	23840											
LILRB1	10859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55143684	55143684	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LILRB1	NM_001081637	exon5	c.C657A	p.V219V	CCTGGTCCTAGGT	.	24	8	107	1	.	137	A	55143684	C	A	55143684	2	1	190	1	0	0	0	0	0	0	0	1	8790	842	30	3		3	LILRB1	19	55143684	Silent	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	589010	55143684	3985299	156	23841	158	2									
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55143685	55143685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LILRB1	NM_001081637	exon5	c.C658A	p.L220I	CTGGTCCTAGGTG	.	24	9	105	0	.	137	A	55143685	C	A	55143685	3	1	190	1	0	0	0	0	1	0	0	0	8790	680	24	3	672	3	LILRB1	19	55143685	Missense_Mutation	SNP	C	TCGA-RC-A7SK-01A-11D-A34Z-10	1	55143685	3985298	157	23842	158	2									
ZNF211	10520	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58152694	58152694	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZNF211	NM_001265597	exon5	c.T1035C	p.S345S	CCACAGTGAAGAA	.	17	6	59	0	.	92	C	58152694	T	C	58152694	2	2	190	1	0	0	0	0	0	0	0	1	17764	1693	59	2		2	ZNF211	19	58152694	Silent	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10	3009009	58152694	976289	158	23843											
DDRGK1	65992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3171873	3171873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DDRGK1	NM_023935	exon8	c.T741A	p.N247K	GATGCGATTTATG	.	38	6	68	0	.	90	T	3171873	A	T	3171873	3	4	190	1	0	0	0	0	1	0	0	0	4338	330	12	4	211	4	DDRGK1	20	3171873	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		3171873	59853647	159	23844											
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18165423	18165423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CSRP2BP	NM_020536	exon9	c.A2162G	p.Y721C	TGATCTATCATCT	.	59	8	87	0	.	525	G	18165423	A	G	18165423	3	3	190	1	0	0	0	0	1	0	0	0	3968	449	16	2	2196	2	CSRP2BP	20	18165423	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10	14993550	18165423	44860097	160	23845											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	35134244	35134244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ITSN1	NM_001001132	exon9	c.A742G	p.I248V	AGAACTATTCTTA	.	98	6	216	0	.	94	G	35134244	A	G	35134244	3	3	190	1	0	0	0	0	1	0	0	0	7926	449	16	2	772	2	ITSN1	21	35134244	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		35134244	12995651	161	23846											
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46671305	46671305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTC38	NM_017931	exon5	c.A526G	p.I176V	CCTGACATCCCCC	.	28	11	90	0	.	91	G	46671305	A	G	46671305	3	3	190	1	0	0	0	0	1	0	0	0	16703	217	8	2	544	2	TTC38	22	46671305	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		46671305	4633261	162	23847											
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50037976	50037976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CCNB3	NM_033031	exon4	c.T318A	p.N106K	AAAGAATAAGCGG	.	31	16	107	0	.	482	A	50037976	T	A	50037976	3	1	190	1	0	0	0	0	1	0	0	0	2914	1403	49	4	328	4	CCNB3	23	50037976	Missense_Mutation	SNP	T	TCGA-RC-A7SK-01A-11D-A34Z-10		50037976	105232584	163	23848											
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4968005	4968005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_032972	exon2	c.A2386G	p.S796G	CTCTTCAGTGTTG	.	65	39	201	0	.	.	G	4968005	A	G	4968005	3	3	190	1	0	0	0	0	1	0	0	0	11509	188	7	2	2428	2	PCDH11Y	24	4968005	Missense_Mutation	SNP	A	TCGA-RC-A7SK-01A-11D-A34Z-10		4968005	54405561	164	23849											
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26694244	26694244	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_173574	exon3	c.T159C	p.H53H	TGGGCCATGAGCA	.	81	19	101	0	.	.	G	26694244	A	G	26694244	2	3	191	1	0	0	0	0	0	0	0	1	18087	214	8	2		2	ZNF683	1	26694244	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10		26694244	222556377	1	23850											
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31438867	31438867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PUM1	NM_014676	exon13	c.C2048T	p.A683V	AGGGTGGCGCCGA	.	135	15	124	0	.	92	A	31438867	G	A	31438867	3	1	191	1	0	0	0	0	1	0	0	0	12825	1203	42	3	1558	3	PUM1	1	31438867	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	4744623	31438867	217811754	2	23851											
ATG4C	84938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63294791	63294791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ATG4C	NM_178221	exon7	c.G877T	p.V293F	ATTCTAGTTCCTG	.	116	27	107	0	.	91	T	63294791	G	T	63294791	3	4	191	1	0	0	0	0	1	0	0	0	1098	1029	36	3	899	3	ATG4C	1	63294791	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	31855924	63294791	185955830	3	23852											
SLC22A15	55356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	116574033	116574033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLC22A15	NM_018420	exon6	c.A775C	p.S259R	CGACTGAGTGAGG	.	100	21	112	0	.	67	C	116574033	A	C	116574033	3	2	191	1	0	0	0	0	1	0	0	0	14446	304	11	5	797	5	SLC22A15	1	116574033	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	53279242	116574033	132676588	4	23853											
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152279556	152279556	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FLG	NM_002016	exon3	c.C7806A	p.G2602G	TCTGGAGCCATCT	.	257	61	202	0	.	106	T	152279556	G	T	152279556	2	4	191	1	0	0	0	0	0	0	0	1	5922	958	34	3		3	FLG	1	152279556	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	35705523	152279556	96971065	5	23854											
LCE1E	353135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152760020	152760020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCE1E	NM_178353	exon2	c.A245G	p.H82R	ACAGGCACCACAG	.	176	82	142	1	.	90	G	152760020	A	G	152760020	3	3	191	1	0	0	0	0	1	0	0	0	8663	159	6	2	247	2	LCE1E	1	152760020	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	480464	152760020	96490601	6	23855											
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157516904	157516904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FCRL5	NM_031281	exon3	c.G136A	p.G46R	GAAATCCCTTGCA	.	87	5	51	0	.	156	T	157516904	C	T	157516904	3	4	191	1	0	0	0	0	1	0	0	0	5798	632	22	3	2857	3	FCRL5	1	157516904	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	4756884	157516904	91733717	7	23856											
FCRL6	343413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159778188	159778188	+	Silent	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FCRL6	NM_001004310	exon3	c.A273C	p.P91P	TATTCCACAGACA	.	312	139	300	2	.	93	C	159778188	A	C	159778188	2	2	191	1	0	0	0	0	0	0	0	1	5799	146	6	5		5	FCRL6	1	159778188	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	2261284	159778188	89472433	8	23857											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204192627	204192627	+	Missense_Mutation	SNP	C	C	A	rs201146402	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PLEKHA6	NM_014935	exon22	c.G3118T	p.A1040S	TGTCGGCGCCCCG	.	161	15	157	0	.	654	A	204192627	C	A	204192627	3	1	191	1	0	0	0	0	1	0	0	0	12060	768	27	1	32	1	PLEKHA6	1	204192627	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	44414439	204192627	45057994	9	23858											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215808006	215808006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	USH2A	NM_206933	exon70	c.G15092T	p.R5031L	TTGCTCCGCGATC	.	155	18	94	0	.	115	A	215808006	C	A	215808006	3	1	191	1	0	0	0	0	1	0	0	0	17033	652	23	1	528	1	USH2A	1	215808006	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	11615379	215808006	33442615	10	23859											
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	236193033	236193033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NID1	NM_002508	exon7	c.C1555T	p.Q519X	CAGCCTGGCGAGT	.	61	26	75	0	.	154	A	236193033	G	A	236193033	4	1	191	1	0	0	0	0	0	1	0	0	10414	1357	47	3	2244	3	NID1	1	236193033	Nonsense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	20385027	236193033	13057588	11	23860											
TCF23	150921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	27372096	27372096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TCF23	NM_175769	exon1	c.G95A	p.R32K	CTGACAGGAAGAG	.	109	6	98	0	.	90	A	27372096	G	A	27372096	3	1	191	1	0	0	0	0	1	0	0	0	15689	1000	35	3	97	3	TCF23	2	27372096	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10		27372096	215827277	12	23861											
AFTPH	54812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	64779926	64779926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	AFTPH	NM_017657	exon2	c.T1318G	p.S440A	TTTGGCTCTGCCA	.	67	5	69	0	.	70	G	64779926	T	G	64779926	3	3	191	1	0	0	0	0	1	0	0	0	364	1551	54	5	1320	5	AFTPH	2	64779926	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	37407830	64779926	178419447	13	23862											
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu	37	2	70188307	70188356	+	Frame_Shift_Del	DEL	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ASPRV1	NM_152792	exon1	c.465_514del	p.155_172del	CCCCAAAGGCCTT	.	70	7	65	0	.	69	-	70188356	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	-	70188307	7	5	191	1	0	1	0	1	0	0	0	0	1058	72	3	0	521	0	ASPRV1	2	70188307	Frame_Shift_Del	DEL	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	TCGA-RG-A7D4-01A-12D-A33Q-10	5408381	70188307	173011066	14	23863											
TGOLN2	10618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85554158	85554158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TGOLN2	NM_001206841	exon2	c.G697A	p.D233N	GCCCGTCTATTGG	.	58	7	78	0	.	22	T	85554158	C	T	85554158	3	4	191	1	0	0	0	0	1	0	0	0	15833	913	32	3	628	3	TGOLN2	2	85554158	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	15365851	85554158	157645215	15	23864											
NCAPH	23397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97017638	97017638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NCAPH	NM_015341	exon7	c.A790G	p.T264A	CTGTCCACTCTCC	.	74	19	72	0	.	228	G	97017638	A	G	97017638	3	3	191	1	0	0	0	0	1	0	0	0	10209	159	6	2	816	2	NCAPH	2	97017638	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	11463480	97017638	146181735	16	23865											
RGPD4	285190	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108487761	108487761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RGPD4	NM_182588	exon20	c.C3301G	p.R1101G	CTGATGCGAAGAG	.	28	5	14	0	.	2	G	108487761	C	G	108487761	3	3	191	1	0	0	0	0	1	0	0	0	13288	760	27	4	3379	4	RGPD4	2	108487761	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	11470123	108487761	134711612	17	23866											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179427137	179427137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TTN	NM_001267550	exon326	c.G83722A	p.E27908K	ACTTTTCACTCCC	.	64	17	33	0	.	636	T	179427137	C	T	179427137	3	4	191	1	0	0	0	0	1	0	0	0	16732	835	29	3	24405	3	TTN	2	179427137	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	70939376	179427137	63772236	18	23867											
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190922105	190922105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MSTN	NM_005259	exon3	c.C1007G	p.A336G	GGGCCTGCTGAAC	.	79	18	55	0	.	650	C	190922105	G	C	190922105	3	2	191	1	0	0	0	0	1	0	0	0	9893	1319	46	4	124	4	MSTN	2	190922105	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	11494968	190922105	52277268	19	23868											
ALS2CR11	151254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	202436741	202436741	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ALS2CR11	NM_001168217	exon8	c.A756G	p.L252L	AGGTTTTAACTGA	.	54	14	36	0	.	155	C	202436741	T	C	202436741	2	2	191	1	0	0	0	0	0	0	0	1	552	1751	61	2		2	ALS2CR11	2	202436741	Silent	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	11514636	202436741	40762632	20	23869											
NRP2	8828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	206581088	206581088	+	Silent	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NRP2	NM_201279	exon3	c.C423A	p.I141I	CGAGATCTTCAAG	.	54	16	66	0	.	93	A	206581088	C	A	206581088	2	1	191	1	0	0	0	0	0	0	0	1	10661	903	32	3		3	NRP2	2	206581088	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	4144347	206581088	36618285	21	23870											
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209218741	209218741	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PIKFYVE	NM_015040	exon40	c.A5964G	p.L1988L	CCCTCTATATATT	.	95	22	99	0	.	583	G	209218741	A	G	209218741	2	3	191	1	0	0	0	0	0	0	0	1	11924	436	16	2		2	PIKFYVE	2	209218741	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	2637653	209218741	33980632	22	23871											
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234875362	234875362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TRPM8	NM_024080	exon15	c.C1988T	p.A663V	TGGAGGCCACAGA	.	73	23	47	0	.	94	T	234875362	C	T	234875362	3	4	191	1	0	0	0	0	1	0	0	0	16589	739	26	3	2042	3	TRPM8	2	234875362	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	25656621	234875362	8324011	23	23872											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38159367	38159367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DLEC1	NM_007337	exon33	c.G4556A	p.R1519Q	ACTTCCGGCTTAT	.	80	19	84	0	.	161	A	38159367	G	A	38159367	3	1	191	1	0	0	0	0	1	0	0	0	4552	1116	39	1	4686	1	DLEC1	3	38159367	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10		38159367	159863063	24	23873											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	159	60	129	0	.	24361	C	41266136	T	C	41266136	3	2	191	1	0	0	0	0	1	0	0	0	4016	1783	62	2	139	2	CTNNB1	3	41266136	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	3106769	41266136	156756294	25	23874											
CD200R1	131450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112648003	112648003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CD200R1	NM_138939	exon4	c.C554T	p.S185L	TCTGGTGATGTGA	.	80	11	72	0	.	93	A	112648003	G	A	112648003	3	1	191	1	0	0	0	0	1	0	0	0	2981	1294	45	3	559	3	CD200R1	3	112648003	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	71381867	112648003	85374427	26	23875											
C3orf27	23434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128292489	128292489	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	C3orf27	NM_007354	exon3	c.C84T	p.R28R	CTGGAGGCGGGAG	.	115	24	126	0	.	90	A	128292489	G	A	128292489	2	1	191	1	0	0	0	0	0	0	0	1	2219	1190	42	3		3	C3orf27	3	128292489	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	15644486	128292489	69729941	27	23876											
DHX15	1665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24531241	24531241	+	Silent	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DHX15	NM_001358	exon13	c.A2253T	p.T751T	GATATCTGTACAT	.	120	10	94	0	.	91	A	24531241	T	A	24531241	2	1	191	1	0	0	0	0	0	0	0	1	4501	1567	55	4		4	DHX15	4	24531241	Silent	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10		24531241	166623035	28	23877											
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70504723	70504723	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	UGT2A1	NM_001252274	exon3	c.G1239A	p.Q413Q	GGTCATCTGGTCA	.	196	22	160	0	.	92	T	70504723	C	T	70504723	2	4	191	1	0	0	0	0	0	0	0	1	16950	912	32	3		3	UGT2A1	4	70504723	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	45973482	70504723	120649553	29	23878											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79158773	79158773	+	Splice_Site	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FRAS1	NM_001166133	exon3	c.216+2T>C	.	AGAAGGTACGGTA	.	42	7	52	0	.	68	C	79158773	T	C	79158773	5	2	191	1	0	0	0	0	0	0	1	0	6042	1652	57	2	228	2	FRAS1	4	79158773	Splice_Site	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	8654050	79158773	111995503	30	23879											
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100232814	100232814	+	Splice_Site	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADH1B	NM_000668	exon8	c.829-1G>A	.	AGCCATCTGGAAT	.	59	7	65	0	.	136	T	100232814	C	T	100232814	5	4	191	1	0	0	0	0	0	0	1	0	308	927	32	3	311	3	ADH1B	4	100232814	Splice_Site	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	21074041	100232814	90921462	31	23880											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114275909	114275909	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ANK2	NM_001148	exon38	c.A6135G	p.T2045T	GAAAACAGAGAAT	.	151	40	154	0	.	583	G	114275909	A	G	114275909	2	3	191	1	0	0	0	0	0	0	0	1	621	175	7	2		2	ANK2	4	114275909	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	14043095	114275909	76878367	32	23881											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126241701	126241701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAT4	NM_024582	exon1	c.G4135T	p.D1379Y	AAACTGGACTTTG	.	93	21	97	0	.	108	T	126241701	G	T	126241701	3	4	191	1	0	0	0	0	1	0	0	0	5692	1174	41	3	4137	3	FAT4	4	126241701	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	11965792	126241701	64912575	33	23882											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu	37	4	126373179	126373179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAT4	NM_024582	exon9	c.T11008C	p.S3670P	CTGAATTCCCAGC	.	51	5	43	0	.	108	C	126373179	T	C	126373179	3	2	191	1	0	0	0	0	1	0	0	0	5692	1783	62	2	11042	2	FAT4	4	126373179	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	131478	126373179	64781097	34	23883											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450819	138450819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PCDH18	NM_019035	exon1	c.C2424G	p.I808M	TGATGAGATTGTC	.	71	17	74	0	.	185	C	138450819	G	C	138450819	3	2	191	1	0	0	0	0	1	0	0	0	11513	932	33	4	999	4	PCDH18	4	138450819	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	12077640	138450819	52703457	35	23884											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38409153	38409153	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	EGFLAM	NM_001205301	exon10	c.C1296T	p.H432H	CGAACACGGGAGG	.	67	14	66	0	.	187	T	38409153	C	T	38409153	2	4	191	1	0	0	0	0	0	0	0	1	4966	535	19	1		1	EGFLAM	5	38409153	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10		38409153	142506107	36	23885											
CCDC125	202243	hgsc.bcm.edu;bcgsc.ca	37	5	68595919	68595919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CCDC125	NM_176816	exon7	c.C736G	p.L246V	TATCAAGCATGGC	.	110	6	71	0	.	90	C	68595919	G	C	68595919	3	2	191	1	0	0	0	0	1	0	0	0	2761	971	34	4	819	4	CCDC125	5	68595919	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	30186766	68595919	112319341	37	23886											
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74973679	74973679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	POC5	NM_001099271	exon11	c.A1504C	p.I502L	TGCTAATTCTATT	.	104	29	64	0	.	45	G	74973679	T	G	74973679	3	3	191	1	0	0	0	0	1	0	0	0	12177	1493	52	5	231	5	POC5	5	74973679	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	6377760	74973679	105941581	38	23887											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89979611	89979611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR98	NM_032119	exon28	c.C5873T	p.S1958F	GTGGTTCTTTGGG	.	110	39	103	0	.	103	T	89979611	C	T	89979611	3	4	191	1	0	0	0	0	1	0	0	0	6721	913	32	3	5983	3	GPR98	5	89979611	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	15005932	89979611	90935649	39	23888											
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94022288	94022288	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ANKRD32	NM_032290	exon16	c.A1986G	p.S662S	TTCTTCACAGGAA	.	67	14	34	0	.	92	G	94022288	A	G	94022288	2	3	191	1	0	0	0	0	0	0	0	1	660	146	6	2		2	ANKRD32	5	94022288	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	4042677	94022288	86892972	40	23889											
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140737153	140737153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_018917	exon1	c.G2386T	p.D796Y	ACTCAGGATTTAC	.	167	58	136	0	.	.	T	140737153	G	T	140737153	3	4	191	1	0	0	0	0	1	0	0	0	11556	1174	41	3	2388	3	PCDHGA4	5	140737153	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	46714865	140737153	40178107	41	23890											
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168123358	168123358	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLIT3	NM_001271946	exon28	c.C3042T	p.N1014N	GGCATTGTTTTCG	.	74	32	68	0	.	95	A	168123358	G	A	168123358	2	1	191	1	0	0	0	0	0	0	0	1	14741	1368	48	3		3	SLIT3	5	168123358	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	27386205	168123358	12791902	42	23891											
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535273	169535273	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FOXI1	NM_012188	exon2	c.G795A	p.E265E	CCCAGAGAAGCGG	.	161	19	110	0	.	229	A	169535273	G	A	169535273	2	1	191	1	0	0	0	0	0	0	0	1	6009	933	33	3		3	FOXI1	5	169535273	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	1411915	169535273	11379987	43	23892											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169689689	169689689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCP2	NM_005565	exon13	c.A876C	p.E292D	ATGTCTTTCCGTG	.	152	52	119	0	.	23	G	169689689	T	G	169689689	3	3	191	1	0	0	0	0	1	0	0	0	8692	1838	64	5	761	5	LCP2	5	169689689	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	154416	169689689	11225571	44	23893											
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35773531	35773531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LHFPL5	NM_182548	exon1	c.G84A	p.M28I	CGTGATGTGGGGT	.	136	43	95	0	.	91	A	35773531	G	A	35773531	3	1	191	1	0	0	0	0	1	0	0	0	8768	1377	48	3	86	3	LHFPL5	6	35773531	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10		35773531	135341536	45	23894											
KHDC1L	100129128	broad.mit.edu;bcgsc.ca	37	6	73935081	73935081	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KHDC1L	NM_001126063	exon1	c.C51A	p.P17P	GTTTTCGGGCAGG	.	86	27	81	0	.	1	T	73935081	G	T	73935081	2	4	191	1	0	0	0	0	0	0	0	1	8145	1103	39	1		1	KHDC1L	6	73935081	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	38161550	73935081	97179986	46	23895	159	2									
KHDC1L	100129128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73935082	73935082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KHDC1L	NM_001126063	exon1	c.C50A	p.P17H	TTTTCGGGCAGGG	.	86	27	82	0	.	1	T	73935082	G	T	73935082	3	4	191	1	0	0	0	0	1	0	0	0	8145	1232	43	3	348	3	KHDC1L	6	73935082	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	1	73935082	97179985	47	23896	159	2									
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106552731	106552731	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PRDM1	NM_001198	exon5	c.C696T	p.S232S	ACCGAGCACTGAG	.	60	7	38	0	.	862	T	106552731	C	T	106552731	2	4	191	1	0	0	0	0	0	0	0	1	12450	709	25	3		3	PRDM1	6	106552731	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	32617649	106552731	64562336	48	23897											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111732714	111732714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	REV3L	NM_002912	exon3	c.A373G	p.I125V	GATAGATCTTCAT	.	234	56	131	0	.	294	C	111732714	T	C	111732714	3	2	191	1	0	0	0	0	1	0	0	0	13240	1435	50	2	9139	2	REV3L	6	111732714	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	5179983	111732714	59382353	49	23898											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	138619874	138619874	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KIAA1244	NM_020340	exon22	c.C3780T	p.F1260F	ACCTTTCGAGCGC	.	95	8	72	0	.	228	T	138619874	C	T	138619874	2	4	191	1	0	0	0	0	0	0	0	1	8217	883	31	1		1	KIAA1244	6	138619874	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	26887160	138619874	32495193	50	23899											
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550515	167550515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CCR6	NM_004367	exon3	c.G797A	p.C266Y	TGGCTTGTCAGAT	.	77	16	58	0	.	227	A	167550515	G	A	167550515	3	1	191	1	0	0	0	0	1	0	0	0	2945	1377	48	3	803	3	CCR6	6	167550515	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	28930641	167550515	3564552	51	23900											
MTMR9	66036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11167038	11167038	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MTMR9	NM_015458	exon6	c.A812T	p.Y271F	AAAGGTATCACAT	.	44	15	45	0	.	226	T	11167038	A	T	11167038	3	4	191	1	0	0	0	0	1	0	0	0	9950	449	16	4	834	4	MTMR9	8	11167038	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10		11167038	135196984	52	23901											
PRKDC	5591	broad.mit.edu;mdanderson.org	37	8	48794656	48794656	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PRKDC	.	.	.	.	GGCACTCACCTGA	.	56	10	35	0	.	1515	T	48794656	C	T	48794656	2	4	191	1	0	0	0	0	0	0	0	1	12521	813	29	3		3	PRKDC	8	48794656	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	37627618	48794656	97569366	53	23902											
CPA6	57094	hgsc.bcm.edu;bcgsc.ca	37	8	68658304	68658304	+	Missense_Mutation	SNP	A	A	G	rs147067921	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CPA6	NM_020361	exon1	c.T61C	p.F21L	TCAAAAAGAGCCA	.	225	13	126	0	A|1.000;T|0.000	92	G	68658304	A	G	68658304	3	3	191	1	0	0	0	0	1	0	0	0	3794	72	3	2	1296	2	CPA6	8	68658304	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	19863648	68658304	77705718	54	23903											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	69020369	69020369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PREX2	NM_024870	exon24	c.C2741T	p.A914V	ATAGGGCCTGGCC	.	94	5	50	0	.	390	T	69020369	C	T	69020369	3	4	191	1	0	0	0	0	1	0	0	0	12477	739	26	3	3064	3	PREX2	8	69020369	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	362065	69020369	77343653	55	23904											
SLC25A32	81034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104427069	104427069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLC25A32	NM_030780	exon1	c.G97A	p.G33S	AGACGCCGCCGCT	.	173	102	113	0	.	91	T	104427069	C	T	104427069	3	4	191	1	0	0	0	0	1	0	0	0	14496	652	23	1	878	1	SLC25A32	8	104427069	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	35406700	104427069	41936953	56	23905											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	18888005	18888005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADAMTSL1	NM_001040272	exon24	c.4426delG	p.G1476fs	GAGGCAGGGGTGC	.	96	16	109	0	.	230	-	18888005	G	-	18888005	7	5	191	1	0	1	0	1	0	0	0	0	274	1000	35	0	4524	0	ADAMTSL1	9	18888005	Frame_Shift_Del	DEL	G	TCGA-RG-A7D4-01A-12D-A33Q-10		18888005	122325426	57	23906											
IFNA10	3446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21206860	21206860	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	IFNA10	NM_002171	exon1	c.C237T	p.V79V	ATGGAGGACAGAG	.	154	14	151	0	.	90	A	21206860	G	A	21206860	2	1	191	1	0	0	0	0	0	0	0	1	7532	1161	41	3		3	IFNA10	9	21206860	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	2318855	21206860	120006571	58	23907											
DCAF12	25853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34089528	34089528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DCAF12	NM_015397	exon8	c.T1085C	p.L362P	AACAGCAGGGAGC	.	52	23	45	0	.	90	G	34089528	A	G	34089528	3	3	191	1	0	0	0	0	1	0	0	0	4263	188	7	2	284	2	DCAF12	9	34089528	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	12882668	34089528	107123903	59	23908											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79820239	79820239	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	VPS13A	NM_001018038	exon4	c.A198G	p.K66K	TCTTAAACTTATA	.	235	56	213	0	.	161	G	79820239	A	G	79820239	2	3	191	1	0	0	0	0	0	0	0	1	17186	40	2	2		2	VPS13A	9	79820239	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	45730711	79820239	61393192	60	23909											
LRSAM1	90678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	130242226	130242226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LRSAM1	NM_001005373	exon14	c.C1012T	p.R338W	TCCAGCCGGATCC	.	144	12	166	0	.	90	T	130242226	C	T	130242226	3	4	191	1	0	0	0	0	1	0	0	0	9043	643	23	1	1058	1	LRSAM1	9	130242226	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	50421987	130242226	10971205	61	23910											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137713941	137713941	+	Splice_Site	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	COL5A1	NM_000093	exon59	c.4555-2A>T	.	CTTTTCAGGGTAT	.	28	9	25	0	.	524	T	137713941	A	T	137713941	5	4	191	1	0	0	0	0	0	0	1	0	3696	202	7	4	4787	4	COL5A1	9	137713941	Splice_Site	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	7471715	137713941	3499490	62	23911											
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15255230	15255230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAM171A1	NM_001010924	exon8	c.C2357T	p.T786M	AGCTGCGTGTAGG	.	101	11	136	0	.	138	A	15255230	G	A	15255230	3	1	191	1	0	0	0	0	1	0	0	0	5490	1145	40	1	319	1	FAM171A1	10	15255230	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10		15255230	120279517	63	23912											
RTKN2	219790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	63976948	63976948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RTKN2	NM_145307	exon9	c.949delC	p.L317fs	AATAGAGTTTACC	.	151	39	174	0	.	68	-	63976948	G	-	63976948	7	5	191	1	0	1	0	1	0	0	0	0	13723	1029	36	0	896	0	RTKN2	10	63976948	Frame_Shift_Del	DEL	G	TCGA-RG-A7D4-01A-12D-A33Q-10	48721718	63976948	71557799	64	23913											
KIF11	3832	broad.mit.edu;bcgsc.ca	37	10	94376541	94376541	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KIF11	NM_004523	exon9	c.G1080A	p.L360L	CATATTGAATAAG	.	60	5	49	0	.	227	A	94376541	G	A	94376541	2	1	191	1	0	0	0	0	0	0	0	1	8272	1281	45	3		3	KIF11	10	94376541	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	30399593	94376541	41158206	65	23914											
PDCD11	22984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105183390	105183390	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PDCD11	NM_014976	exon19	c.A2738T	p.D913V	ACCAGGACTTGGT	.	63	8	63	1	.	275	T	105183390	A	T	105183390	3	4	191	1	0	0	0	0	1	0	0	0	11617	275	10	4	2808	4	PDCD11	10	105183390	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	10806849	105183390	30351357	66	23915											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115349517	115349517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NRAP	NM_001261463	exon41	c.G4996A	p.G1666S	TCCAGCCAACACC	.	64	7	44	0	.	522	T	115349517	C	T	115349517	3	4	191	1	0	0	0	0	1	0	0	0	10638	594	21	3	204	3	NRAP	10	115349517	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	10166127	115349517	20185230	67	23916											
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7063785	7063785	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NLRP14	NM_176822	exon4	c.A528G	p.P176P	ACAGCCACAGATC	.	100	24	125	0	.	295	G	7063785	A	G	7063785	2	3	191	1	0	0	0	0	0	0	0	1	10476	146	6	2		2	NLRP14	11	7063785	Silent	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10		7063785	127942731	68	23917											
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10785358	10785358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CTR9	NM_014633	exon9	c.G1126A	p.E376K	AATTACGAAACTA	.	64	8	55	0	.	92	A	10785358	G	A	10785358	3	1	191	1	0	0	0	0	1	0	0	0	4024	1059	37	1	1160	1	CTR9	11	10785358	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	3721573	10785358	124221158	69	23918											
RASSF10	644943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13031864	13031864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001080521	exon1	c.C741G	p.H247Q	GCTCCACGAGCTG	.	117	32	130	0	.	.	G	13031864	C	G	13031864	3	3	191	1	0	0	0	0	1	0	0	0	13085	535	19	4	1071	4	RASSF10	11	13031864	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	2246506	13031864	121974652	70	23919											
CHST1	8534	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45671573	45671573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CHST1	NM_003654	exon4	c.C901T	p.R301C	CGTAGCGCACCAA	.	49	13	61	1	.	95	A	45671573	G	A	45671573	3	1	191	1	0	0	0	0	1	0	0	0	3397	1087	38	1	338	1	CHST1	11	45671573	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	32639709	45671573	89334943	71	23920											
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51411561	51411561	+	Silent	SNP	G	G	A	rs5011060		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR4A5	NM_001005272	exon1	c.C835T	p.L279L	GACTCAGCATGTG	.	81	15	88	0	.	92	A	51411561	G	A	51411561	2	1	191	1	0	0	0	0	0	0	0	1	11043	962	34	3		3	OR4A5	11	51411561	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	5739988	51411561	83594955	72	23921											
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64055851	64055851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR137	NM_001170726	exon7	c.G997A	p.V333I	TACCTGGTATTTG	.	31	7	50	0	.	68	A	64055851	G	A	64055851	3	1	191	1	0	0	0	0	1	0	0	0	6645	1261	44	3	1023	3	GPR137	11	64055851	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	12644290	64055851	70950665	73	23922											
SNX15	29907	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64802558	64802558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SNX15	NM_147777	exon5	c.G400T	p.V134L	TTGGAGGTGTCCA	.	109	9	140	0	.	227	T	64802558	G	T	64802558	3	4	191	1	0	0	0	0	1	0	0	0	14886	1261	44	3	418	3	SNX15	11	64802558	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	746707	64802558	70203958	74	23923											
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65422089	65422089	+	Silent	SNP	G	G	T	rs150493312	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RELA	NM_021975	exon11	c.C1416A	p.S472S	AAACTCGGAGTTG	.	73	20	81	0	G|1.000;C|0.000	872	T	65422089	G	T	65422089	2	4	191	1	0	0	0	0	0	0	0	1	13216	1103	39	1		1	RELA	11	65422089	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	619531	65422089	69584427	75	23924											
SIK3	23387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116728796	116728796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SIK3	NM_025164	exon20	c.C3067T	p.H1023Y	ACCCGTGGGGCGG	.	80	22	124	0	.	919	A	116728796	G	A	116728796	3	1	191	1	0	0	0	0	1	0	0	0	14319	1348	47	3	740	3	SIK3	11	116728796	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	51306707	116728796	18277720	76	23925											
OR8B4	283162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124294034	124294034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR8B4	NM_001005196	exon1	c.T734A	p.I245N	ACAGCAATTATGT	.	55	13	68	1	.	69	T	124294034	A	T	124294034	3	4	191	1	0	0	0	0	1	0	0	0	11229	101	4	4	197	4	OR8B4	11	124294034	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	7565238	124294034	10712482	77	23926											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134027961	134027961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NCAPD3	NM_015261	exon31	c.C4036T	p.P1346S	ACATGGGCCTGTG	.	42	12	37	0	.	229	A	134027961	G	A	134027961	3	1	191	1	0	0	0	0	1	0	0	0	10206	1217	42	3	480	3	NCAPD3	11	134027961	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	9733927	134027961	978555	78	23927											
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	7295867	7295867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CLSTN3	NM_014718	exon12	c.A1807G	p.T603A	TTTGCCACGCCCG	.	30	12	36	0	.	153	G	7295867	A	G	7295867	3	3	191	1	0	0	0	0	1	0	0	0	3563	159	6	2	1853	2	CLSTN3	12	7295867	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10		7295867	126556028	79	23928											
CD69	969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9906144	9906144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CD69	NM_001781	exon5	c.A533C	p.N178T	TCTGTGTTTTTCA	.	123	15	97	0	.	90	G	9906144	T	G	9906144	3	3	191	1	0	0	0	0	1	0	0	0	3031	1725	60	5	70	5	CD69	12	9906144	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	2610277	9906144	123945751	80	23929											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41422971	41422971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CNTN1	NM_001843	exon23	c.G2930A	p.R977H	AGGTTCGCGCGCA	.	114	33	95	0	.	1149	A	41422971	G	A	41422971	3	1	191	1	0	0	0	0	1	0	0	0	3640	1087	38	1	3016	1	CNTN1	12	41422971	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	31516827	41422971	92428924	81	23930											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70949887	70949887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PTPRB	NM_001109754	exon19	c.T4756C	p.S1586P	CCGTGGAGTTCTG	.	76	6	81	0	.	226	G	70949887	A	G	70949887	3	3	191	1	0	0	0	0	1	0	0	0	12796	304	11	2	1955	2	PTPRB	12	70949887	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	29526916	70949887	62902008	82	23931											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81747020	81747020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PPFIA2	NM_001220476	exon16	c.T1872A	p.D624E	ATCATCATCAATA	.	117	40	74	0	.	231	T	81747020	A	T	81747020	3	4	191	1	0	0	0	0	1	0	0	0	12310	214	8	4	1965	4	PPFIA2	12	81747020	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	10797133	81747020	52104875	83	23932											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104157269	104157269	+	Splice_Site	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	STAB2	NM_017564	exon68	c.7489-1G>C	.	CAAACAGTCGGAA	.	75	21	69	0	.	104	C	104157269	G	C	104157269	5	2	191	1	0	0	0	0	0	0	1	0	15237	1043	36	4	7758	4	STAB2	12	104157269	Splice_Site	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	22410249	104157269	29694626	84	23933											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129569203	129569203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TMEM132D	NM_133448	exon6	c.G1488T	p.M496I	GCCTTTCATTTCT	.	95	19	109	0	.	106	A	129569203	C	A	129569203	3	1	191	1	0	0	0	0	1	0	0	0	16044	826	29	3	1827	3	TMEM132D	12	129569203	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	25411934	129569203	4282692	85	23934											
OR4K17	390436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20585954	20585954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR4K17	NM_001004715	exon1	c.C389A	p.T130N	GCTTCACTCAGAT	.	92	18	85	0	.	71	A	20585954	C	A	20585954	3	1	191	1	0	0	0	0	1	0	0	0	11071	565	20	3	391	3	OR4K17	14	20585954	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10		20585954	86763586	86	23935											
NUBPL	80224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32030678	32030678	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NUBPL	NM_025152	exon1	c.T33C	p.G11G	TTTTGGTGGGGTG	.	31	6	41	0	.	226	C	32030678	T	C	32030678	2	2	191	1	0	0	0	0	0	0	0	1	10717	1683	59	2		2	NUBPL	14	32030678	Silent	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	11444724	32030678	75318862	87	23936											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51233078	51233079	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	p.FL527LM	CTTGCAGGAAGAA	.	81	14	78	0	.	.	TT	51233079	GG	TT	51233078	3	4	191	1	0	0	0	0	1	0	0	0	10417	991	35	3	5039	3	NIN	14	51233078	Missense_Mutation	DNP	GG	TCGA-RG-A7D4-01A-12D-A33Q-10	19202400	51233078	56116462	88	23937											
PTGER2	5732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52781678	52781678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PTGER2	NM_000956	exon1	c.A412G	p.I138V	CTCTCGATCGGGC	.	56	14	72	0	.	658	G	52781678	A	G	52781678	3	3	191	1	0	0	0	0	1	0	0	0	12743	333	12	2	414	2	PTGER2	14	52781678	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	1548600	52781678	54567862	89	23938											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33825515	33825515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RYR3	NM_001243996	exon5	c.C358A	p.L120I	CAGTATCTAACAT	.	31	7	26	0	.	520	A	33825515	C	A	33825515	3	1	191	1	0	0	0	0	1	0	0	0	13770	912	32	3	376	3	RYR3	15	33825515	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10		33825515	68705877	90	23939											
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42298317	42298317	+	Silent	SNP	G	G	A	rs189566576	by1000genomes	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001206670	exon4	c.C396T	p.N132N	TAGCACGTTCTAG	.	96	31	137	0	G|0.997;A|0.003	.	A	42298317	G	A	42298317	2	1	191	1	0	0	0	0	0	0	0	1	12005	1136	40	1		1	PLA2G4E	15	42298317	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	8472802	42298317	60233075	91	23940											
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43621087	43621087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCMT2	NM_014793	exon1	c.G1601T	p.R534L	GAATGCCGGGCTT	.	36	8	22	0	.	90	A	43621087	C	A	43621087	3	1	191	1	0	0	0	0	1	0	0	0	8679	652	23	1	463	1	LCMT2	15	43621087	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	1322770	43621087	58910305	92	23941											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52652277	52652277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MYO5A	NM_000259	exon25	c.A3311G	p.H1104R	GGCACATGCTGCA	.	51	13	54	0	.	93	C	52652277	T	C	52652277	3	2	191	1	0	0	0	0	1	0	0	0	10078	1478	51	2	2324	2	MYO5A	15	52652277	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	9031190	52652277	49879115	93	23942											
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	84118684	84118684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MBTPS1	NM_003791	exon10	c.G1190C	p.G397A	CGCACGCCAGCAC	.	123	11	200	0	.	92	G	84118684	C	G	84118684	3	3	191	1	0	0	0	0	1	0	0	0	9361	739	26	4	2024	4	MBTPS1	16	84118684	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10		84118684	6236069	94	23943											
CYB5D2	124936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4058038	4058038	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CYB5D2	NM_144611	exon3	c.G462A	p.A154A	AGCTGCGATCACC	.	110	43	148	0	.	155	A	4058038	G	A	4058038	2	1	191	1	0	0	0	0	0	0	0	1	4125	1045	37	1		1	CYB5D2	17	4058038	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10		4058038	77137172	95	23944											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G824A	p.C275Y	CAGGCACAAACAC	.	52	15	84	0	.	70225	T	7577114	C	T	7577114	3	4	191	1	0	0	0	0	1	0	0	0	16378	478	17	3	462	3	TP53	17	7577114	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	3519076	7577114	73618096	96	23945											
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7851880	7851898	+	Frame_Shift_Del	DEL	GGGGGGCTCTGCCTGCTGA	GGGGGGCTCTGCCTGCTGA	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	GGGGGGCTCTGCCTGCTGA	GGGGGGCTCTGCCTGCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CNTROB	NM_001037144	exon17	c.2456_2474del	p.819_825del	GGGGCTGGGGGGC	.	91	20	150	0	.	153	-	7851898	GGGGGGCTCTGCCTGCTGA	-	7851880	7	5	191	1	0	1	0	1	0	0	0	0	3651	1357	47	0	2522	0	CNTROB	17	7851880	Frame_Shift_Del	DEL	GGGGGGCTCTGCCTGCTGA	TCGA-RG-A7D4-01A-12D-A33Q-10	274766	7851880	73343330	97	23946											
STXBP4	252983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53158439	53158439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	STXBP4	NM_178509	exon16	c.A1384G	p.T462A	TCTCAGACTTCCC	.	131	47	105	0	.	91	G	53158439	A	G	53158439	3	3	191	1	0	0	0	0	1	0	0	0	15354	275	10	2	1438	2	STXBP4	17	53158439	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	45306559	53158439	28036771	98	23947											
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58260713	58260713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	USP32	NM_032582	exon31	c.G3936T	p.L1312F	TGGTACCAAAAAA	.	161	84	111	0	.	704	A	58260713	C	A	58260713	3	1	191	1	0	0	0	0	1	0	0	0	17060	593	21	3	894	3	USP32	17	58260713	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	5102274	58260713	22934497	99	23948											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3134722	3134722	+	Silent	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MYOM1	NM_003803	exon16	c.G2310T	p.G770G	GTAGTACCCGACC	.	196	86	90	0	.	94	A	3134722	C	A	3134722	2	1	191	1	0	0	0	0	0	0	0	1	10091	494	18	3		3	MYOM1	18	3134722	Silent	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10		3134722	74942526	100	23949											
ADNP2	22850	broad.mit.edu;bcgsc.ca	37	18	77896513	77896513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADNP2	NM_014913	exon4	c.A3217G	p.I1073V	AAGGAAATAGAAC	.	62	4	65	0	.	140	G	77896513	A	G	77896513	3	3	191	1	0	0	0	0	1	0	0	0	324	101	4	2	3227	2	ADNP2	18	77896513	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10	74761791	77896513	180735	101	23950											
PALM	5064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	746557	746557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PALM	NM_002579	exon9	c.A907G	p.M303V	ATCTTCATGGGTT	.	55	22	83	0	.	68	G	746557	A	G	746557	3	3	191	1	0	0	0	0	1	0	0	0	11408	217	8	2	941	2	PALM	19	746557	Missense_Mutation	SNP	A	TCGA-RG-A7D4-01A-12D-A33Q-10		746557	58382426	102	23951											
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23545412	23545412	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ZNF91	NM_003430	exon4	c.A369G	p.R123R	ACCTTTTCTTAAC	.	39	4	40	0	.	90	C	23545412	T	C	23545412	2	2	191	1	0	0	0	0	0	0	0	1	18197	1780	62	2		2	ZNF91	19	23545412	Silent	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	22798855	23545412	35583571	103	23952											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47864862	47864862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ZNFX1	NM_021035	exon14	c.A4699G	p.M1567V	CATCCATGTGGCA	.	72	35	85	0	.	24	C	47864862	T	C	47864862	3	2	191	1	0	0	0	0	1	0	0	0	18202	1464	51	2	1061	2	ZNFX1	20	47864862	Missense_Mutation	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10		47864862	15160658	104	23953											
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32234735	32234735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DEPDC5	NM_001242896	exon27	c.C2419T	p.L807F	CAACGTCTCATGC	.	58	20	87	0	.	519	T	32234735	C	T	32234735	3	4	191	1	0	0	0	0	1	0	0	0	4442	913	32	3	2512	3	DEPDC5	22	32234735	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10		32234735	19069831	105	23954											
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41075734	41075734	+	Silent	SNP	G	G	T	rs201514957		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MCHR1	NM_005297	exon1	c.G285T	p.S95S	CACTTCGGCAGGT	.	63	21	65	0	.	90	T	41075734	G	T	41075734	2	4	191	1	0	0	0	0	0	0	0	1	9382	1103	39	1		1	MCHR1	22	41075734	Silent	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10	8840999	41075734	10228832	106	23955											
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44893693	44893693	+	Splice_Site	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LDOC1L	.	.	.	.	GGGCCCTGGAGGA	.	48	7	38	0	.	69	A	44893693	T	A	44893693	5	1	191	1	0	0	0	0	0	0	1	0	8710	1594	55	4		4	LDOC1L	22	44893693	Splice_Site	SNP	T	TCGA-RG-A7D4-01A-12D-A33Q-10	3817959	44893693	6410873	107	23956											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	3239233	3239233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MXRA5	NM_015419	exon5	c.C4493A	p.T1498K	AGAATTGTGGATG	.	106	5	75	0	.	136	T	3239233	G	T	3239233	3	4	191	1	0	0	0	0	1	0	0	0	10003	1377	48	3	4005	3	MXRA5	23	3239233	Missense_Mutation	SNP	G	TCGA-RG-A7D4-01A-12D-A33Q-10		3239233	152031327	108	23957											
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120182071	120182071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GLUD2	NM_012084	exon1	c.C533G	p.P178R	ATGTGCCGTTTGG	.	46	27	34	0	.	131	G	120182071	C	G	120182071	3	3	191	1	0	0	0	0	1	0	0	0	6477	652	23	4	535	4	GLUD2	23	120182071	Missense_Mutation	SNP	C	TCGA-RG-A7D4-01A-12D-A33Q-10	116942838	120182071	35088489	109	23958											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19513738	19513738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	UBR4	NM_020765	exon13	c.A1552T	p.I518L	TCTGTATGGAGGT	.	82	19	60	0	.	612	A	19513738	T	A	19513738	3	1	192	1	0	0	0	0	1	0	0	0	16901	1464	51	4	14375	4	UBR4	1	19513738	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10		19513738	229736883	1	23959											
CNKSR1	10256	broad.mit.edu;bcgsc.ca	37	1	26514778	26514778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CNKSR1	NM_006314	exon17	c.C1508T	p.A503V	GCCGGGCCCCCCC	.	87	6	39	0	.	846	T	26514778	C	T	26514778	3	4	192	1	0	0	0	0	1	0	0	0	3606	739	26	3	1574	3	CNKSR1	1	26514778	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	7001040	26514778	222735843	2	23960											
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34329977	34329977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HMGB4	NM_145205	exon2	c.C185A	p.A62D	ATGAAGCCCTGGC	.	117	18	88	0	.	90	A	34329977	C	A	34329977	3	1	192	1	0	0	0	0	1	0	0	0	7228	739	26	3	187	3	HMGB4	1	34329977	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	7815199	34329977	214920644	3	23961											
MSH4	4438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	76262910	76262910	+	Silent	SNP	T	T	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MSH4	NM_002440	exon1	c.T240G	p.A80A	GCCAGCTCAAGGC	.	36	12	28	0	.	660	G	76262910	T	G	76262910	2	3	192	1	0	0	0	0	0	0	0	1	9872	1538	54	5		5	MSH4	1	76262910	Silent	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	41932933	76262910	172987711	4	23962											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32842852	32842852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BIRC6	NM_016252	exon74	c.C14455A	p.P4819T	TTGGATCCTGACA	.	85	30	51	0	.	233	A	32842852	C	A	32842852	3	1	192	1	0	0	0	0	1	0	0	0	1438	855	30	3	14749	3	BIRC6	2	32842852	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		32842852	210356521	5	23963											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33413881	33413881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LTBP1	NM_206943	exon7	c.A1664G	p.Q555R	AGACACAGCTTGG	.	103	35	84	0	.	230	G	33413881	A	G	33413881	3	3	192	1	0	0	0	0	1	0	0	0	9073	188	7	2	1745	2	LTBP1	2	33413881	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	571029	33413881	209785492	6	23964											
CCT7	10574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73479859	73479859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCT7	NM_006429	exon12	c.A1502G	p.N501S	GGATCAATGCGCT	.	198	83	119	0	.	90	G	73479859	A	G	73479859	3	3	192	1	0	0	0	0	1	0	0	0	2959	101	4	2	1548	2	CCT7	2	73479859	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	40065978	73479859	169719514	7	23965											
NAT8	9027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73868638	73868638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NAT8	NM_003960	exon2	c.C118A	p.P40T	TTCGAGGCAGCTT	.	86	36	68	0	.	91	T	73868638	G	T	73868638	3	4	192	1	0	0	0	0	1	0	0	0	10179	1203	42	3	569	3	NAT8	2	73868638	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	388779	73868638	169330735	8	23966											
C2orf68	388969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85836186	85836186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C2orf68	NM_001013649	exon4	c.A383G	p.D128G	GGGTCATCACCCT	.	93	35	71	0	.	90	C	85836186	T	C	85836186	3	2	192	1	0	0	0	0	1	0	0	0	2187	1435	50	2	121	2	C2orf68	2	85836186	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	11967548	85836186	157363187	9	23967											
OLA1	29789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175111522	175111522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OLA1	NM_013341	exon2	c.G22A	p.D8N	TTCCATCACCTCC	.	288	30	138	0	.	132	T	175111522	C	T	175111522	3	4	192	1	0	0	0	0	1	0	0	0	10850	826	29	3	1208	3	OLA1	2	175111522	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	89275336	175111522	68087851	10	23968											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212576873	212576873	+	Missense_Mutation	SNP	C	C	G	rs149272231	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ERBB4	NM_001042599	exon9	c.G1026C	p.L342F	TGACATCAATGAT	.	140	73	134	0	C|1.000;T|0.000	1461	G	212576873	C	G	212576873	3	3	192	1	0	0	0	0	1	0	0	0	5209	825	29	4	2980	4	ERBB4	2	212576873	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	37465351	212576873	30622500	11	23969											
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240158361	240158361	+	Splice_Site	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HDAC4	NM_006037	exon4	c.23-1G>C	.	GTCCATCTGGAGA	.	169	86	144	0	.	291	G	240158361	C	G	240158361	5	3	192	1	0	0	0	0	0	0	1	0	7009	927	32	4	3332	4	HDAC4	2	240158361	Splice_Site	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	27581488	240158361	3041012	12	23970											
TRIM71	131405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32932669	32932669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRIM71	NM_001039111	exon4	c.G1973A	p.G658D	CAGCCGGCGTGGC	.	51	17	28	0	.	92	A	32932669	G	A	32932669	3	1	192	1	0	0	0	0	1	0	0	0	16541	1203	42	3	1987	3	TRIM71	3	32932669	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		32932669	165089761	13	23971											
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38347895	38347895	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC22A14	NM_004803	exon1	c.C378T	p.G126G	CAATGGCAGTTTC	.	114	24	122	0	.	90	T	38347895	C	T	38347895	2	4	192	1	0	0	0	0	0	0	0	1	14445	697	25	3		3	SLC22A14	3	38347895	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	5415226	38347895	159674535	14	23972											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51661661	51661661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAD54L2	NM_015106	exon3	c.C232G	p.Q78E	TCATCTCAGTCTG	.	113	34	93	0	.	93	G	51661661	C	G	51661661	3	3	192	1	0	0	0	0	1	0	0	0	12994	827	29	4	238	4	RAD54L2	3	51661661	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	13313766	51661661	146360769	15	23973											
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121712300	121712300	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ILDR1	NM_001199799	exon7	c.1296delG	p.W432fs	CGGCCGCCAGCGT	.	109	47	66	0	.	91	-	121712300	C	-	121712300	7	5	192	1	0	1	0	1	0	0	0	0	7709	740	26	0	352	0	ILDR1	3	121712300	Frame_Shift_Del	DEL	C	TCGA-T1-A6J8-01A-11D-A32G-10	70050639	121712300	76310130	16	23974											
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	165548695	165548695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BCHE	NM_000055	exon2	c.G127A	p.G43R	TCATCCCTCTGAC	.	216	26	168	0	.	94	T	165548695	C	T	165548695	3	4	192	1	0	0	0	0	1	0	0	0	1358	681	24	3	1693	3	BCHE	3	165548695	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	43836395	165548695	32473735	17	23975											
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179093112	179093112	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MFN1	NM_033540	exon10	c.G1080T	p.L360L	AAACCTGGCAGCT	.	229	72	187	1	.	155	T	179093112	G	T	179093112	2	4	192	1	0	0	0	0	0	0	0	1	9523	1335	47	3		3	MFN1	3	179093112	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	13544417	179093112	18929318	18	23976											
TRA2B	6434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185641706	185641706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRA2B	NM_004593	exon4	c.C400A	p.L134I	CTCTTAGATCTCT	.	142	52	91	0	.	92	T	185641706	G	T	185641706	3	4	192	1	0	0	0	0	1	0	0	0	16431	933	33	3	490	3	TRA2B	3	185641706	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	6548594	185641706	12380724	19	23977											
HES1	3280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193854425	193854425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HES1	NM_005524	exon2	c.A128T	p.E43V	TTATGGAGAAAAG	.	190	87	137	0	.	659	T	193854425	A	T	193854425	3	4	192	1	0	0	0	0	1	0	0	0	7065	304	11	4	134	4	HES1	3	193854425	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	8212719	193854425	4168005	20	23978											
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177093603	177093603	+	Silent	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	WDR17	NM_170710	exon26	c.A3297G	p.V1099V	AACTGTAAAATAT	.	211	21	271	1	.	95	G	177093603	A	G	177093603	2	3	192	1	0	0	0	0	0	0	0	1	17274	349	13	2		2	WDR17	4	177093603	Silent	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10		177093603	14060673	21	23979											
CDH10	1008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	24487960	24487960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CDH10	NM_006727	exon12	c.G2179A	p.A727T	GGGGTGCGGTGGG	.	114	14	88	0	.	253	T	24487960	C	T	24487960	3	4	192	1	0	0	0	0	1	0	0	0	3096	768	27	1	191	1	CDH10	5	24487960	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		24487960	156427300	22	23980											
CRHBP	1393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76249897	76249897	+	Silent	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRHBP	NM_001882	exon3	c.C219G	p.T73T	CTTCACCGCCGAC	.	99	35	74	0	.	90	G	76249897	C	G	76249897	2	3	192	1	0	0	0	0	0	0	0	1	3870	639	23	4		4	CRHBP	5	76249897	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	51761937	76249897	104665363	23	23981											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96360250	96360250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LNPEP	NM_005575	exon15	c.G2587A	p.V863M	ACAACTGTGTTCA	.	74	8	56	0	.	229	A	96360250	G	A	96360250	3	1	192	1	0	0	0	0	1	0	0	0	8864	1377	48	3	2645	3	LNPEP	5	96360250	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	20110353	96360250	84555010	24	23982											
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131298318	131298318	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ACSL6	NM_001009185	exon18	c.G1767A	p.Q589Q	TTCTCCCTGAGCA	.	155	8	122	0	.	229	T	131298318	C	T	131298318	2	4	192	1	0	0	0	0	0	0	0	1	181	680	24	3		3	ACSL6	5	131298318	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	34938068	131298318	49616942	25	23983											
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140203515	140203515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDHA5	NM_018908	exon1	c.G2155A	p.A719T	TACACCGCGCTGC	.	135	16	92	0	.	137	A	140203515	G	A	140203515	3	1	192	1	0	0	0	0	1	0	0	0	11527	1087	38	1	2157	1	PCDHA5	5	140203515	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	8905197	140203515	40711745	26	23984											
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177673419	177673419	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	COL23A1	NM_173465	exon23	c.G1332T	p.S444S	CTCACCCGACGCA	.	87	35	60	0	.	91	A	177673419	C	A	177673419	2	1	192	1	0	0	0	0	0	0	0	1	3682	639	23	1		1	COL23A1	5	177673419	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	37469904	177673419	3241841	27	23985											
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178541106	178541106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ADAMTS2	NM_014244	exon22	c.G3398T	p.R1133L	GATGGCCGCACCT	.	241	111	192	0	.	228	A	178541106	C	A	178541106	3	1	192	1	0	0	0	0	1	0	0	0	265	652	23	1	241	1	ADAMTS2	5	178541106	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	867687	178541106	2374154	28	23986											
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35806150	35806150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SRPK1	NM_003137	exon15	c.G1747T	p.A583S	TTCCTGCCACAAT	.	98	38	64	0	.	359	A	35806150	C	A	35806150	3	1	192	1	0	0	0	0	1	0	0	0	15158	739	26	3	228	3	SRPK1	6	35806150	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		35806150	135308917	29	23987											
MAPK14	1432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36075327	36075327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MAPK14	NM_139012	exon11	c.G937A	p.D313N	TACCACGATCCTG	.	128	50	80	0	.	1444	A	36075327	G	A	36075327	3	1	192	1	0	0	0	0	1	0	0	0	9276	1058	37	1	1116	1	MAPK14	6	36075327	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	269177	36075327	135039740	30	23988											
FERD3L	222894	broad.mit.edu;mdanderson.org	37	7	19184881	19184881	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	FERD3L	NM_152898	exon1	c.C105A	p.P35P	GACCCCGGGTGCG	.	27	6	26	0	.	153	T	19184881	G	T	19184881	2	4	192	1	0	0	0	0	0	0	0	1	5816	1103	39	1		1	FERD3L	7	19184881	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		19184881	139953782	31	23989											
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20198542	20198542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MACC1	NM_182762	exon5	c.A1442G	p.H481R	AACAAGTGCATCT	.	121	54	98	0	.	93	C	20198542	T	C	20198542	3	2	192	1	0	0	0	0	1	0	0	0	9143	1696	59	2	1128	2	MACC1	7	20198542	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	1013661	20198542	138940121	32	23990											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48319312	48319312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCA13	NM_152701	exon18	c.A8521G	p.T2841A	ACTTCCACAAGAA	.	154	57	112	0	.	521	G	48319312	A	G	48319312	3	3	192	1	0	0	0	0	1	0	0	0	31	159	6	2	8420	2	ABCA13	7	48319312	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	28120770	48319312	110819351	33	23991											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	69583171	69583171	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AUTS2	NM_001127231	exon3	c.A576T	p.G192G	CAGTGGAGAATCC	.	194	62	158	0	.	92	T	69583171	A	T	69583171	2	4	192	1	0	0	0	0	0	0	0	1	1225	291	11	4		4	AUTS2	7	69583171	Silent	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	21263859	69583171	89555492	34	23992											
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73009991	73009991	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MLXIPL	NM_032951	exon15	c.G2286T	p.T762T	GTGCAGCGTACGG	.	126	50	90	0	.	91	A	73009991	C	A	73009991	2	1	192	1	0	0	0	0	0	0	0	1	9637	755	27	1		1	MLXIPL	7	73009991	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	3426820	73009991	86128672	35	23993											
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82544719	82544719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCLO	NM_014510	exon7	c.C12583A	p.L4195I	CAATTAGTGATTT	.	185	66	137	1	.	29	T	82544719	G	T	82544719	3	4	192	1	0	0	0	0	1	0	0	0	11583	1020	36	3	2938	3	PCLO	7	82544719	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	9534728	82544719	76593944	36	23994											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83606504	83606504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SEMA3A	NM_006080	exon15	c.G1661T	p.R554I	TGTCGTCTTGTGC	.	345	133	324	0	.	156	A	83606504	C	A	83606504	3	1	192	1	0	0	0	0	1	0	0	0	14024	913	32	3	666	3	SEMA3A	7	83606504	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	1061785	83606504	75532159	37	23995											
GRM3	2913	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	86468656	86468656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GRM3	NM_000840	exon4	c.C1826A	p.A609E	TCAAAGCATCGGG	.	79	24	46	1	.	528	A	86468656	C	A	86468656	3	1	192	1	0	0	0	0	1	0	0	0	6798	710	25	3	1836	3	GRM3	7	86468656	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	2862152	86468656	72670007	38	23996											
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88847522	88847522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZNF804B	NM_181646	exon2	c.C162A	p.N54K	GGCAAACTTTTAC	.	114	41	83	0	.	101	A	88847522	C	A	88847522	3	1	192	1	0	0	0	0	1	0	0	0	18168	564	20	3	168	3	ZNF804B	7	88847522	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	2378866	88847522	70291141	39	23997											
HEPACAM2	253012	hgsc.bcm.edu;broad.mit.edu	37	7	92826814	92826814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HEPACAM2	NM_001039372	exon5	c.1122delA	p.K374fs	TTGATATTTTTTC	.	275	17	218	0	.	157	-	92826814	T	-	92826814	7	5	192	1	0	1	0	1	0	0	0	0	7053	1490	52	0	290	0	HEPACAM2	7	92826814	Frame_Shift_Del	DEL	T	TCGA-T1-A6J8-01A-11D-A32G-10	3979292	92826814	66311849	40	23998											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103198496	103198496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RELN	NM_173054	exon37	c.5530delG	p.E1844fs	GTCCTTCCTGAAA	.	285	105	192	0	.	574	-	103198496	C	-	103198496	7	5	192	1	0	1	0	1	0	0	0	0	13220	869	30	0	4968	0	RELN	7	103198496	Frame_Shift_Del	DEL	C	TCGA-T1-A6J8-01A-11D-A32G-10	10371682	103198496	55940167	41	23999											
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105248313	105248313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ATXN7L1	NM_020725	exon12	c.A2572G	p.R858G	GAGTCCTTATCCT	.	220	73	150	0	.	90	C	105248313	T	C	105248313	3	2	192	1	0	0	0	0	1	0	0	0	1216	1608	56	2	17	2	ATXN7L1	7	105248313	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	2049817	105248313	53890350	42	24000											
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107704317	107704317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LAMB4	NM_007356	exon22	c.T2950C	p.C984R	GGCTGCAGGACTC	.	242	92	183	0	.	140	G	107704317	A	G	107704317	3	3	192	1	0	0	0	0	1	0	0	0	8613	188	7	2	2387	2	LAMB4	7	107704317	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	2456004	107704317	51434346	43	24001											
ARF5	381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127230141	127230141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARF5	NM_001662	exon4	c.A280G	p.S94G	GTGGACAGTAATG	.	48	17	33	0	.	228	G	127230141	A	G	127230141	3	3	192	1	0	0	0	0	1	0	0	0	847	188	7	2	294	2	ARF5	7	127230141	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	19525824	127230141	31908522	44	24002											
PIP	5304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	142836665	142836665	+	Missense_Mutation	SNP	C	C	T	rs148216903	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PIP	NM_002652	exon4	c.C371T	p.P124L	TCTGCCCTGATGA	.	240	18	158	0	C|0.997;G|0.003	91	T	142836665	C	T	142836665	3	4	192	1	0	0	0	0	1	0	0	0	11935	681	24	3	385	3	PIP	7	142836665	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	15606524	142836665	16301998	45	24003											
PTPRN2	5799	bcgsc.ca;mdanderson.org	37	7	157449210	157449210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRN2	NM_002847	exon14	c.C2035A	p.P679T	GGTCTGGTGGCCG	.	74	27	35	1	.	295	T	157449210	G	T	157449210	3	4	192	1	0	0	0	0	1	0	0	0	12808	1261	44	3	1052	3	PTPRN2	7	157449210	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	14612545	157449210	1689453	46	24004											
SCRT1	83482	broad.mit.edu;mdanderson.org	37	8	145557361	145557361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_031309	exon2	c.C533A	p.A178E	GCGCGCGCCTCGG	.	26	6	21	0	.	.	T	145557361	G	T	145557361	3	4	192	1	0	0	0	0	1	0	0	0	13941	1087	38	1	517	1	SCRT1	8	145557361	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		145557361	806661	47	24005											
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19576992	19576992	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A2	NM_020344	exon5	c.C1158A	p.L386L	CTTGTGGAGAATT	.	104	64	118	0	.	517	T	19576992	G	T	19576992	2	4	192	1	0	0	0	0	0	0	0	1	14466	1161	41	3		3	SLC24A2	9	19576992	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		19576992	121636439	48	24006											
PTCHD3	374308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27687437	27687437	+	Missense_Mutation	SNP	C	C	A	rs139600575	byfrequency	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTCHD3	NM_001034842	exon4	c.G2090T	p.W697L	TCTAACCAAAACT	.	212	76	181	1	C|0.999;A|0.001	94	A	27687437	C	A	27687437	3	1	192	1	0	0	0	0	1	0	0	0	12734	595	21	3	217	3	PTCHD3	10	27687437	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		27687437	107847310	49	24007											
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45799382	45799382	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR13A1	NM_001004297	exon4	c.C489A	p.A163A	GGCTGTGGCCAGC	.	57	15	37	0	.	68	T	45799382	G	T	45799382	2	4	192	1	0	0	0	0	0	0	0	1	10933	1335	47	3		3	OR13A1	10	45799382	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	18111945	45799382	89735365	50	24008											
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50530973	50530973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf71	NM_001135196	exon3	c.T383C	p.V128A	TGGAGGTGCCAGT	.	89	36	54	0	.	90	C	50530973	T	C	50530973	3	2	192	1	0	0	0	0	1	0	0	0	1614	1696	59	2	385	2	C10orf71	10	50530973	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	4731591	50530973	85003774	51	24009											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55583049	55583049	+	Silent	SNP	T	T	C	rs141623033		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDH15	NM_001142763	exon35	c.A4458G	p.Q1486Q	AACTTGTTGATGT	.	130	54	115	0	T|0.999;C|0.000	193	C	55583049	T	C	55583049	2	2	192	1	0	0	0	0	0	0	0	1	11511	1722	60	2		2	PCDH15	10	55583049	Silent	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	5052076	55583049	79951698	52	24010											
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103783452	103783452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf76	NM_024541	exon7	c.A562T	p.I188L	CAAATATGCTGTT	.	207	52	159	0	.	90	A	103783452	T	A	103783452	3	1	192	1	0	0	0	0	1	0	0	0	1616	1464	51	4	1587	4	C10orf76	10	103783452	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	48200403	103783452	31751295	53	24011											
OR5L2	26338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55594866	55594866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR5L2	NM_001004739	exon1	c.C172A	p.P58T	CACACCCCCGTGT	.	269	109	252	0	.	69	A	55594866	C	A	55594866	3	1	192	1	0	0	0	0	1	0	0	0	11171	623	22	3	174	3	OR5L2	11	55594866	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		55594866	79411650	54	24012											
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56949612	56949612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LRRC55	NM_001005210	exon1	c.C245T	p.P82L	GCTGCCCCGTCCT	.	90	36	60	0	.	90	T	56949612	C	T	56949612	3	4	192	1	0	0	0	0	1	0	0	0	9011	623	22	3	247	3	LRRC55	11	56949612	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	1354746	56949612	78056904	55	24013											
RAB1B	81876	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66039304	66039304	+	Silent	SNP	A	A	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAB1B	NM_030981	exon2	c.A51C	p.S17S	CGACTCAGGCGTG	.	131	52	95	1	.	227	C	66039304	A	C	66039304	2	2	192	1	0	0	0	0	0	0	0	1	12906	175	7	5		5	RAB1B	11	66039304	Silent	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	9089692	66039304	68967212	56	24014											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66475653	66475653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SPTBN2	NM_006946	exon11	c.C1309T	p.R437W	TCTCCCGCATGGC	.	146	34	103	0	.	155	A	66475653	G	A	66475653	3	1	192	1	0	0	0	0	1	0	0	0	15119	1086	38	1	5971	1	SPTBN2	11	66475653	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	436349	66475653	68530863	57	24015											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102816423	102816423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.G1267C	p.D423H	GGAAGTCTTCTTC	.	76	23	67	0	.	229	G	102816423	C	G	102816423	3	3	192	1	0	0	0	0	1	0	0	0	9652	913	32	4	156	4	MMP13	11	102816423	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	36340770	102816423	32190093	58	24016											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102816459	102816459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.A1231G	p.I411V	CCATAATATGGTT	.	74	23	61	0	.	229	C	102816459	T	C	102816459	3	2	192	1	0	0	0	0	1	0	0	0	9652	1406	49	2	192	2	MMP13	11	102816459	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	36	102816459	32190057	59	24017											
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5604082	5604082	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NTF3	NM_001102654	exon2	c.C741T	p.L247L	TAAACTCGTGGGC	.	55	34	76	0	.	205	T	5604082	C	T	5604082	2	4	192	1	0	0	0	0	0	0	0	1	10696	871	31	1		1	NTF3	12	5604082	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		5604082	128247813	60	24018											
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15739913	15739913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRO	NM_030667	exon24	c.G3338C	p.S1113T	CAGAAAGTATCCT	.	91	25	120	0	.	271	C	15739913	G	C	15739913	3	2	192	1	0	0	0	0	1	0	0	0	12809	1029	36	4	3432	4	PTPRO	12	15739913	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	10135831	15739913	118111982	61	24019											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120589170	120589171	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4087_4088del	p.1363_1363del	GGTGGCAAGCAGC	.	72	22	65	0	.	94	-	120589171	AA	-	120589170	7	5	192	1	0	1	0	1	0	0	0	0	6299	131	5	0	4027	0	GCN1L1	12	120589170	Frame_Shift_Del	DEL	AA	TCGA-T1-A6J8-01A-11D-A32G-10	104849257	120589170	13262725	62	24020	160	2									
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120589173	120589174	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4084_4085del	p.1362_1362del	GGCAAGCAGCTGG	.	66	22	63	0	.	94	-	120589174	CA	-	120589173	7	5	192	1	0	1	0	1	0	0	0	0	6299	710	25	0	4030	0	GCN1L1	12	120589173	Frame_Shift_Del	DEL	CA	TCGA-T1-A6J8-01A-11D-A32G-10	3	120589173	13262722	63	24021	160	2									
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121416684	121416684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HNF1A	NM_000545	exon1	c.T113C	p.L38P	ACCTCCTGGCTGG	.	127	44	112	0	.	1745	C	121416684	T	C	121416684	3	2	192	1	0	0	0	0	1	0	0	0	7251	1580	55	2	115	2	HNF1A	12	121416684	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	827511	121416684	12435211	64	24022											
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123498529	123498529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PITPNM2	NM_020845	exon3	c.C139T	p.P47S	TGTACGGCCGGTT	.	141	64	115	0	.	228	A	123498529	G	A	123498529	3	1	192	1	0	0	0	0	1	0	0	0	11951	1203	42	3	4002	3	PITPNM2	12	123498529	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	2081845	123498529	10353366	65	24023											
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125561142	125561142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AACS	NM_023928	exon3	c.G343T	p.A115S	AGAGTTGCCCTTT	.	78	31	60	0	.	92	T	125561142	G	T	125561142	3	4	192	1	0	0	0	0	1	0	0	0	9	1319	46	3	353	3	AACS	12	125561142	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	2062613	125561142	8290753	66	24024											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95858910	95858910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCC4	NM_005845	exon8	c.T1037A	p.I346N	GCTGTGATCACAC	.	72	28	57	0	.	515	T	95858910	A	T	95858910	3	4	192	1	0	0	0	0	1	0	0	0	55	333	12	4	3085	4	ABCC4	13	95858910	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10		95858910	19310968	67	24025											
GPHB5	122876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63784460	63784460	+	RNA	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GPHB5	.	.	.	.	GCACAGCCCACAA	.	108	45	77	0	.	67	A	63784460	C	A	63784460	1	1	192	0	1	0	0	0	0	0	0	0	6609	739	26	3		3	GPHB5	14	63784460	RNA	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		63784460	43565080	68	24026											
ZFP36L1	677	broad.mit.edu;bcgsc.ca	37	14	69256313	69256313	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZFP36L1	NM_001244701	exon3	c.C1161T	p.S387S	GGTCGGGGAGTCT	.	94	43	51	1	.	91	A	69256313	G	A	69256313	2	1	192	1	0	0	0	0	0	0	0	1	17643	1219	43	3		3	ZFP36L1	14	69256313	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	5471853	69256313	38093227	69	24027											
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77714715	77714715	+	Missense_Mutation	SNP	G	G	A	rs180758756	by1000genomes	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_020431	exon19	c.G1627A	p.A543T	AACGGCGCCTTCT	.	106	40	93	0	G|0.999;A|0.000	.	A	77714715	G	A	77714715	3	1	192	1	0	0	0	0	1	0	0	0	16189	1087	38	1	1693	1	TMEM63C	14	77714715	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	8458402	77714715	29634825	70	24028											
CRIP2	1397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105945934	105945934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRIP2	NM_001270837	exon8	c.G793T	p.G265C	AACACCGGTGCGG	.	79	34	60	0	.	226	T	105945934	G	T	105945934	3	4	192	1	0	0	0	0	1	0	0	0	3875	1116	39	1	601	1	CRIP2	14	105945934	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	28231219	105945934	1403606	71	24029											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	30000996	30000997	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TJP1	NM_003257	exon25	c.4616_4617del	p.1539_1539del	GCGTTCAAATGGT	.	288	107	189	0	.	95	-	30000997	AA	-	30000996	7	5	192	1	0	1	0	1	0	0	0	0	15926	127	5	0	645	0	TJP1	15	30000996	Frame_Shift_Del	DEL	AA	TCGA-T1-A6J8-01A-11D-A32G-10		30000996	72530396	72	24030											
GABPB1	2553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50596296	50596296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GABPB1	NM_016654	exon3	c.A143G	p.Y48C	TGACCATACTGTG	.	121	44	87	0	.	153	C	50596296	T	C	50596296	3	2	192	1	0	0	0	0	1	0	0	0	6158	1406	49	2	1120	2	GABPB1	15	50596296	Missense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	20595300	50596296	51935096	73	24031											
MAPK6	5597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52357167	52357167	+	Silent	SNP	A	A	T	rs201094277		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MAPK6	NM_002748	exon6	c.A2136T	p.T712T	TCAAACATACAGC	.	180	67	145	1	A|0.999;T|0.001	1403	T	52357167	A	T	52357167	2	4	192	1	0	0	0	0	0	0	0	1	9281	204	8	4		4	MAPK6	15	52357167	Silent	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	1760871	52357167	50174225	74	24032											
UNC13C	440279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54307530	54307531	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AG	AG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	p.V811L	GGAAGTAGTATGG	.	85	37	74	2	.	.	TT	54307531	AG	TT	54307530	3	4	192	1	0	0	0	0	1	0	0	0	16983	407	15	4	2432	4	UNC13C	15	54307530	Missense_Mutation	DNP	AG	TCGA-T1-A6J8-01A-11D-A32G-10	1950363	54307530	48223862	75	24033											
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	57730244	57730244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CGNL1	NM_001252335	exon3	c.G47T	p.G16V	AATATGGGGTCCA	.	47	20	23	0	.	100	T	57730244	G	T	57730244	3	4	192	1	0	0	0	0	1	0	0	0	3304	1232	43	3	49	3	CGNL1	15	57730244	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	3422714	57730244	44801148	76	24034											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	63988457	63988457	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HERC1	NM_003922	exon27	c.A4987T	p.R1663X	TCAATCTGCTTCC	.	147	58	112	0	.	666	A	63988457	T	A	63988457	4	1	192	1	0	0	0	0	0	1	0	0	7057	1588	55	4	9806	4	HERC1	15	63988457	Nonsense_Mutation	SNP	T	TCGA-T1-A6J8-01A-11D-A32G-10	6258213	63988457	38542935	77	24035											
CLK3	1198	hgsc.bcm.edu;bcgsc.ca	37	15	74919878	74919878	+	Splice_Site	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_003992	exon9	c.913-2A>G	.	CCTTTCAGAGCTG	.	105	37	83	0	.	358	G	74919878	A	G	74919878	5	3	192	1	0	0	0	0	0	0	1	0	3538	202	7	2	1389	2	CLK3	15	74919878	Splice_Site	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	10931421	74919878	27611514	78	24036	161	2									
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74919883	74919895	+	Frame_Shift_Del	DEL	TGTGAGGAGAAGT	TGTGAGGAGAAGT	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	TGTGAGGAGAAGT	TGTGAGGAGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_001130028	exon9	c.1360_1372del	p.454_458del	CAGAGCTGTGAGG	.	113	38	84	0	.	358	-	74919895	TGTGAGGAGAAGT	-	74919883	7	5	192	1	0	1	0	1	0	0	0	0	3538	1580	55	0	1394	0	CLK3	15	74919883	Frame_Shift_Del	DEL	TGTGAGGAGAAGT	TCGA-T1-A6J8-01A-11D-A32G-10	5	74919883	27611509	79	24037	161	2									
PSTPIP1	9051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77310567	77310567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PSTPIP1	NM_003978	exon2	c.A115T	p.M39L	AAAGACATGGAGG	.	77	31	53	0	.	23	T	77310567	A	T	77310567	3	4	192	1	0	0	0	0	1	0	0	0	12721	217	8	4	121	4	PSTPIP1	15	77310567	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	2390684	77310567	25220825	80	24038											
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80873588	80873588	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARNT2	NM_014862	exon17	c.A1761T	p.P587P	AATCCCATCTCAG	.	193	83	161	0	.	175	T	80873588	A	T	80873588	2	4	192	1	0	0	0	0	0	0	0	1	966	204	8	4		4	ARNT2	15	80873588	Silent	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	3563021	80873588	21657804	81	24039											
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83330629	83330629	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AP3B2	NM_004644	exon24	c.G2907A	p.G969G	CAGCTCCCCAACA	.	108	50	87	0	.	94	T	83330629	C	T	83330629	2	4	192	1	0	0	0	0	0	0	0	1	745	610	22	3		3	AP3B2	15	83330629	Silent	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	2457041	83330629	19200763	82	24040											
PDZD9	255762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21995863	21995863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PDZD9	NM_173806	exon3	c.C340T	p.H114Y	CAGGGTGATGCAC	.	247	56	261	0	.	91	A	21995863	G	A	21995863	3	1	192	1	0	0	0	0	1	0	0	0	11706	1290	45	3	278	3	PDZD9	16	21995863	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		21995863	68358890	83	24041											
MVP	9961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29848051	29848051	+	Silent	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MVP	NM_017458	exon7	c.G681C	p.L227L	AGCCCTGCACCTC	.	43	10	27	0	.	93	C	29848051	G	C	29848051	2	2	192	1	0	0	0	0	0	0	0	1	9996	1306	46	4		4	MVP	16	29848051	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	7852188	29848051	60506702	84	24042											
ASPHD1	253982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29912699	29912699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ASPHD1	NM_181718	exon1	c.C407A	p.P136H	GGGATCCCGGGGA	.	35	16	31	0	.	68	A	29912699	C	A	29912699	3	1	192	1	0	0	0	0	1	0	0	0	1054	623	22	3	409	3	ASPHD1	16	29912699	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	64648	29912699	60442054	85	24043											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	TP53,NS,haematopoietic_neoplasm,0	TP53	NM_000546	exon7	c.560-1G>A	.	CCAGACCTAAGAG	.	71	41	87	0	.	70225	T	7578290	C	T	7578290	5	4	192	1	0	0	0	0	0	0	1	0	16378	695	24	3	735	3	TP53	17	7578290	Splice_Site	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		7578290	73616920	86	24044											
TOP2A	7153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38546362	38546362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TOP2A	NM_001067	exon34	c.C4322A	p.T1441N	CTTTTAGTTCCTT	.	248	107	211	1	.	655	T	38546362	G	T	38546362	3	4	192	1	0	0	0	0	1	0	0	0	16362	1029	36	3	281	3	TOP2A	17	38546362	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	30968072	38546362	42648848	87	24045											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60088411	60088411	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MED13	NM_005121	exon9	c.C1467T	p.D489D	ATCTGCGTCCATG	.	351	34	287	0	.	136	A	60088411	G	A	60088411	2	1	192	1	0	0	0	0	0	0	0	1	9430	1136	40	1		1	MED13	17	60088411	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	21542049	60088411	21106799	88	24046											
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76814798	76814798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	USP36	NM_025090	exon10	c.C974G	p.T325S	GAAAGGGTTAAGA	.	162	55	138	0	.	659	C	76814798	G	C	76814798	3	2	192	1	0	0	0	0	1	0	0	0	17064	1261	44	4	2441	4	USP36	17	76814798	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	16726387	76814798	4380412	89	24047											
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	57363935	57363935	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCBE1	NM_133459	exon2	c.C138T	p.I46I	TGAGCAGATTTCT	.	115	34	113	0	.	93	A	57363935	G	A	57363935	2	1	192	1	0	0	0	0	0	0	0	1	2731	932	33	3		3	CCBE1	18	57363935	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		57363935	20713313	90	24048											
HAMP	57817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35775694	35775694	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HAMP	NM_021175	exon2	c.G93A	p.T31T	ACAGACGGGACAA	.	113	41	74	0	.	90	A	35775694	G	A	35775694	2	1	192	1	0	0	0	0	0	0	0	1	6948	1103	39	1		1	HAMP	19	35775694	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10		35775694	23353289	91	24049											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36273524	36273524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARHGAP33	NM_052948	exon14	c.A1256G	p.E419G	GGGAGGAGGAGCG	.	53	20	38	0	.	229	G	36273524	A	G	36273524	3	3	192	1	0	0	0	0	1	0	0	0	882	304	11	2	1310	2	ARHGAP33	19	36273524	Missense_Mutation	SNP	A	TCGA-T1-A6J8-01A-11D-A32G-10	497830	36273524	22855459	92	24050											
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40902988	40902988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRX	NM_181882	exon7	c.C1271T	p.S424F	CCAAGGGAGGGCA	.	139	52	85	0	.	92	A	40902988	G	A	40902988	3	1	192	1	0	0	0	0	1	0	0	0	12642	1174	41	3	3118	3	PRX	19	40902988	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	4629464	40902988	18225995	93	24051											
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41386034	41386034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CYP2A7	NM_000764	exon4	c.C609A	p.S203R	CATCATGCTCAGC	.	108	46	74	0	.	93	T	41386034	G	T	41386034	3	4	192	1	0	0	0	0	1	0	0	0	4163	1310	46	3	899	3	CYP2A7	19	41386034	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	483046	41386034	17742949	94	24052											
IGFL4	444882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46543655	46543655	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	IGFL4	NM_001002923	exon3	c.C90T	p.C30C	TGGCTGGCATAGC	.	101	45	65	0	.	90	A	46543655	G	A	46543655	2	1	192	1	0	0	0	0	0	0	0	1	7589	1195	42	3		3	IGFL4	19	46543655	Silent	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	5157621	46543655	12585328	95	24053											
SLC24A3	57419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19673903	19673903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A3	NM_020689	exon13	c.C1325T	p.S442L	TTCCAGCGGGTAA	.	120	51	97	1	.	91	T	19673903	C	T	19673903	3	4	192	1	0	0	0	0	1	0	0	0	14467	782	27	1	1375	1	SLC24A3	20	19673903	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		19673903	43351617	96	24054											
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329069	33329069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NCOA6	NM_014071	exon11	c.C4991A	p.S1664Y	ATTGAGGATGAAT	.	113	31	82	0	.	292	T	33329069	G	T	33329069	3	4	192	1	0	0	0	0	1	0	0	0	10233	1174	41	3	1220	3	NCOA6	20	33329069	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	13655166	33329069	29696451	97	24055											
BID	637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18256445	18256445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BID	NM_197966	exon1	c.G11A	p.G4D	CCAGCACCGCTGC	.	31	24	72	0	.	1083	T	18256445	C	T	18256445	3	4	192	1	0	0	0	0	1	0	0	0	1430	507	18	3	738	3	BID	22	18256445	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10		18256445	33048121	98	24056											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26422950	26422950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MYO18B	NM_032608	exon43	c.C7010G	p.T2337R	GGGGCACAACCCT	.	34	22	23	0	.	142	G	26422950	C	G	26422950	3	3	192	1	0	0	0	0	1	0	0	0	10066	478	17	4	7176	4	MYO18B	22	26422950	Missense_Mutation	SNP	C	TCGA-T1-A6J8-01A-11D-A32G-10	8166505	26422950	24881616	99	24057											
PRKX	5613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	3533925	3533925	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.882delG	p.A294fs	ATCATTCGCCCCG	.	142	102	114	0	.	540	-	3533925	C	-	3533925	7	5	192	1	0	1	0	1	0	0	0	0	12527	871	31	0	202	0	PRKX	23	3533925	Frame_Shift_Del	DEL	C	TCGA-T1-A6J8-01A-11D-A32G-10		3533925	151736635	100	24058	162	2									
PRKX	5613	hgsc.bcm.edu;bcgsc.ca	37	X	3533926	3533926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.C881A	p.A294E	TCATTCGCCCCGT	.	141	105	112	0	.	540	T	3533926	G	T	3533926	3	4	192	1	0	0	0	0	1	0	0	0	12527	1087	38	1	203	1	PRKX	23	3533926	Missense_Mutation	SNP	G	TCGA-T1-A6J8-01A-11D-A32G-10	1	3533926	151736634	101	24059	162	2									
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32133203	32133203	+	Silent	SNP	G	G	A	rs200246591	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COL16A1	NM_001856	exon52	c.C3330T	p.T1110T	TGACCCGGTGTAG	.	65	17	105	0	G|0.999;T|0.000	98	A	32133203	G	A	32133203	2	1	193	1	0	0	0	0	0	0	0	1	3673	1103	39	1		1	COL16A1	1	32133203	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		32133203	217117418	1	24060											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42041241	42041241	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HIVEP3	NM_024503	exon5	c.G5181A	p.P1727P	CCTCGCCGGCTCC	.	27	15	64	0	.	157	T	42041241	C	T	42041241	2	4	193	1	0	0	0	0	0	0	0	1	7188	639	23	1		1	HIVEP3	1	42041241	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	9908038	42041241	207209380	2	24061											
DMRTA2	63950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	50886867	50886867	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_032110	exon2	c.G342C	p.A114A	GCGCAGCGCCACC	.	30	14	31	0	.	.	G	50886867	C	G	50886867	2	3	193	1	0	0	0	0	0	0	0	1	4589	755	27	4		4	DMRTA2	1	50886867	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	8845626	50886867	198363754	3	24062											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63001217	63001217	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DOCK7	NM_001271999	exon29	c.G3558A	p.L1186L	TCCTGCCAAATAA	.	120	54	126	0	.	92	T	63001217	C	T	63001217	2	4	193	1	0	0	0	0	0	0	0	1	4692	593	21	3		3	DOCK7	1	63001217	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	12114350	63001217	186249404	4	24063											
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	77093235	77093235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ST6GALNAC3	NM_152996	exon4	c.722delC	p.T241fs	ATGACACCTACTG	.	31	11	31	0	.	95	-	77093235	C	-	77093235	7	5	193	1	0	1	0	1	0	0	0	0	15224	507	18	0	750	0	ST6GALNAC3	1	77093235	Frame_Shift_Del	DEL	C	TCGA-UB-A7MA-01A-11D-A33Q-10	14092018	77093235	172157386	5	24064											
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150255801	150255801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	C1orf51	NM_144697	exon1	c.C124A	p.H42N	GGGGCCCATGGGC	.	191	20	162	0	.	90	A	150255801	C	A	150255801	3	1	193	1	0	0	0	0	1	0	0	0	2043	594	21	3	126	3	C1orf51	1	150255801	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	73162566	150255801	98994820	6	24065											
IVL	3713	ucsc.edu;bcgsc.ca	37	1	152884007	152884007	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	IVL	NM_005547	exon2	c.G1734T	p.V578V	GGAGGTGCAGTGG	.	398	78	211	2	.	93	T	152884007	G	T	152884007	2	4	193	1	0	0	0	0	0	0	0	1	7929	1306	46	3		3	IVL	1	152884007	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	2628206	152884007	96366614	7	24066											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158637739	158637739	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SPTA1	NM_003126	exon15	c.G1947A	p.E649E	ACCACCCTCAATC	.	106	72	79	0	.	142	T	158637739	C	T	158637739	2	4	193	1	0	0	0	0	0	0	0	1	15115	680	24	3		3	SPTA1	1	158637739	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	5753732	158637739	90612882	8	24067											
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160264344	160264344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COPA	NM_001098398	exon25	c.C2633T	p.A878V	CCAAGAGCATCAT	.	234	133	212	0	.	92	A	160264344	G	A	160264344	3	1	193	1	0	0	0	0	1	0	0	0	3727	971	34	3	1104	3	COPA	1	160264344	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	1626605	160264344	88986277	9	24068											
CDC73	79577	broad.mit.edu;bcgsc.ca	37	1	193094335	193094335	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CDC73	NM_024529	exon2	c.C225A	p.V75V	TTATGTCCGACGT	.	119	8	160	0	.	1009	A	193094335	C	A	193094335	2	1	193	1	0	0	0	0	0	0	0	1	3085	842	30	3		3	CDC73	1	193094335	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	32829991	193094335	56156286	10	24069											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207651318	207651318	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CR2	NM_001006658	exon16	c.T2991A	p.T997T	TGTAACTCTGGAG	.	163	40	196	0	.	232	A	207651318	T	A	207651318	2	1	193	1	0	0	0	0	0	0	0	1	3842	1538	54	4		4	CR2	1	207651318	Silent	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	14556983	207651318	41599303	11	24070											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237540701	237540702	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RYR2	NM_001035	exon8	c.542_543insCA	p.L181fs	ATGACCTCATCTT	.	87	18	74	0	.	158	CA	237540702	-	CA	237540701	7	5	193	1	0	1	1	0	0	0	0	0	13769	1551	54	0	572	0	RYR2	1	237540701	Frame_Shift_Ins	INS	-	TCGA-UB-A7MA-01A-11D-A33Q-10	29889383	237540701	11709920	12	24071											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133554289	133554289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_207481	exon12	c.G821A	p.R274H	AAGAGACGTGAGT	.	48	10	62	0	.	.	T	133554289	C	T	133554289	3	4	193	1	0	0	0	0	1	0	0	0	10223	536	19	1	4944	1	NCKAP5	2	133554289	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		133554289	109645084	13	24072											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133721442	133721442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_207481	exon8	c.G430A	p.E144K	GCTTTTCCTGAAG	.	50	32	64	0	.	.	T	133721442	C	T	133721442	3	4	193	1	0	0	0	0	1	0	0	0	10223	869	30	3	5351	3	NCKAP5	2	133721442	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	167153	133721442	109477931	14	24073											
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168105658	168105658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	XIRP2	NM_152381	exon9	c.G7756C	p.E2586Q	GAAAAGGAAATGC	.	260	42	219	1	.	104	C	168105658	G	C	168105658	3	2	193	1	0	0	0	0	1	0	0	0	17427	1175	41	4	7786	4	XIRP2	2	168105658	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	34384216	168105658	75093715	15	24074											
CFLAR	8837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201994647	201994647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CFLAR	NM_001202516	exon2	c.T59C	p.M20T	AGGAGATGCTGCT	.	121	73	122	0	.	227	C	201994647	T	C	201994647	3	2	193	1	0	0	0	0	1	0	0	0	3292	1464	51	2	61	2	CFLAR	2	201994647	Missense_Mutation	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	33888989	201994647	41204726	16	24075											
DYTN	391475	broad.mit.edu;ucsc.edu	37	2	207559510	207559510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DYTN	NM_001093730	exon8	c.G811A	p.V271I	CAATGACAGGATG	.	49	5	52	0	.	23	T	207559510	C	T	207559510	3	4	193	1	0	0	0	0	1	0	0	0	4861	478	17	3	945	3	DYTN	2	207559510	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	5564863	207559510	35639863	17	24076											
KCNE4	23704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223917618	223917618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KCNE4	NM_080671	exon2	c.C223T	p.R75C	GAGTCCCGTGCGG	.	41	32	46	0	.	91	T	223917618	C	T	223917618	3	4	193	1	0	0	0	0	1	0	0	0	8025	652	23	1	72	1	KCNE4	2	223917618	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	16358108	223917618	19281755	18	24077											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225367700	225367700	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CUL3	NM_001257198	exon10	c.A1485G	p.Q495Q	TAGATGTTGCCTG	.	61	11	94	0	.	229	C	225367700	T	C	225367700	2	2	193	1	0	0	0	0	0	0	0	1	4056	1722	60	2		2	CUL3	2	225367700	Silent	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	1450082	225367700	17831673	19	24078											
NEU2	4759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233899058	233899058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NEU2	NM_005383	exon2	c.C434T	p.A145V	CTGATGCGGCCAT	.	45	30	81	1	.	90	T	233899058	C	T	233899058	3	4	193	1	0	0	0	0	1	0	0	0	10342	768	27	1	440	1	NEU2	2	233899058	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	8531358	233899058	9300315	20	24079											
ASB18	401036	broad.mit.edu;bcgsc.ca	37	2	237103519	237103519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ASB18	NM_212556	exon6	c.A1397G	p.H466R	TTTCAGTGCAAAA	.	124	7	171	0	.	227	C	237103519	T	C	237103519	3	2	193	1	0	0	0	0	1	0	0	0	1022	1696	59	2	6	2	ASB18	2	237103519	Missense_Mutation	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	3204461	237103519	6095854	21	24080											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	443359	443359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CHL1	NM_006614	exon27	c.G3436A	p.D1146N	GTAAAAGATGAAA	.	57	16	85	0	.	583	A	443359	G	A	443359	3	1	193	1	0	0	0	0	1	0	0	0	3349	942	33	3	3534	3	CHL1	3	443359	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		443359	197579071	22	24081											
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121981009	121981009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CASR	NM_001178065	exon4	c.G1127A	p.G376D	TGAGAGGTCACGA	.	104	47	139	0	.	97	A	121981009	G	A	121981009	3	1	193	1	0	0	0	0	1	0	0	0	2682	1261	44	3	1137	3	CASR	3	121981009	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	121537650	121981009	76041421	23	24082											
SEMA5B	54437	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122632773	122632773	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SEMA5B	NM_001256347	exon15	c.G2226A	p.Q742Q	ACTTCGCTGGCGG	.	37	5	36	0	.	157	T	122632773	C	T	122632773	2	4	193	1	0	0	0	0	0	0	0	1	14038	796	28	3		3	SEMA5B	3	122632773	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	651764	122632773	75389657	24	24083											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142232443	142232443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ATR	NM_001184	exon26	c.G4541T	p.C1514F	ATGCTACAGCAGG	.	209	65	297	0	.	1139	A	142232443	C	A	142232443	3	1	193	1	0	0	0	0	1	0	0	0	1204	478	17	3	3481	3	ATR	3	142232443	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	19599670	142232443	55789987	25	24084											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48512111	48512111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FRYL	NM_015030	exon59	c.G8359A	p.D2787N	ATGTATCCAGGTG	.	58	25	70	0	.	69	T	48512111	C	T	48512111	3	4	193	1	0	0	0	0	1	0	0	0	6064	855	30	3	706	3	FRYL	4	48512111	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		48512111	142642165	26	24085											
TRIM60	166655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	165962556	165962556	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TRIM60	NM_001258025	exon4	c.C1332T	p.F444F	TTGTTTCACAGAA	.	82	18	82	1	.	226	T	165962556	C	T	165962556	2	4	193	1	0	0	0	0	0	0	0	1	16532	825	29	3		3	TRIM60	4	165962556	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	117450445	165962556	25191720	27	24086	163	2									
TRIM60	166655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	165962559	165962559	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TRIM60	NM_001258025	exon4	c.A1335T	p.T445T	TTTCACAGAAGCC	.	82	20	84	0	.	226	T	165962559	A	T	165962559	2	4	193	1	0	0	0	0	0	0	0	1	16532	175	7	4		4	TRIM60	4	165962559	Silent	SNP	A	TCGA-UB-A7MA-01A-11D-A33Q-10	3	165962559	25191717	28	24087	163	2									
TLL1	7092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166976398	166976398	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TLL1	NM_012464	exon13	c.A1695G	p.A565A	CAAAGCAGGGTTT	.	106	44	119	1	.	158	G	166976398	A	G	166976398	2	3	193	1	0	0	0	0	0	0	0	1	15942	175	7	2		2	TLL1	4	166976398	Silent	SNP	A	TCGA-UB-A7MA-01A-11D-A33Q-10	1013839	166976398	24177878	29	24088											
PDE8B	8622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76633096	76633096	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PDE8B	NM_001029852	exon6	c.G753C	p.L251L	TGAACTGATTCAA	.	130	18	162	0	.	90	C	76633096	G	C	76633096	2	2	193	1	0	0	0	0	0	0	0	1	11654	1277	45	4		4	PDE8B	5	76633096	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		76633096	104282164	30	24089											
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78320120	78320120	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DMGDH	NM_013391	exon14	c.C2224T	p.L742L	ATTCCAGTCCAGC	.	239	88	292	0	.	94	A	78320120	G	A	78320120	2	1	193	1	0	0	0	0	0	0	0	1	4581	1020	36	3		3	DMGDH	5	78320120	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	1687024	78320120	102595140	31	24090											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89990343	89990343	+	Silent	SNP	C	C	T	rs201767905		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GPR98	NM_032119	exon33	c.C7770T	p.S2590S	TACTTCCGAAGAT	.	64	29	66	0	C|0.999;T|0.000	103	T	89990343	C	T	89990343	2	4	193	1	0	0	0	0	0	0	0	1	6721	639	23	1		1	GPR98	5	89990343	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	11670223	89990343	90924917	32	24091											
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181914	140181914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PCDHA3	NM_031497	exon1	c.G1132A	p.D378N	GACCGCGACTCAG	.	81	10	116	0	.	98	A	140181914	G	A	140181914	3	1	193	1	0	0	0	0	1	0	0	0	11525	1058	37	1	1134	1	PCDHA3	5	140181914	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	50191571	140181914	40733346	33	24092											
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178562943	178562943	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	ADAMTS2,NS,carcinoma,0	ADAMTS2	NM_014244	exon13	c.C2052T	p.D684D	GAAGGCGTCCTTG	.	94	47	108	1	.	228	A	178562943	G	A	178562943	2	1	193	1	0	0	0	0	0	0	0	1	265	1136	40	1		1	ADAMTS2	5	178562943	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	38381029	178562943	2352317	34	24093											
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26056402	26056402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HIST1H1C	NM_005319	exon1	c.G255C	p.K85N	CAGGCTCTTGAGA	.	127	15	87	0	.	231	G	26056402	C	G	26056402	3	3	193	1	0	0	0	0	1	0	0	0	7124	912	32	4	390	4	HIST1H1C	6	26056402	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		26056402	145058665	35	24094											
ZKSCAN3	80317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28333341	28333341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZKSCAN3	NM_024493	exon6	c.G896A	p.G299D	AGGAGGGCAGGCT	.	148	56	103	0	.	92	A	28333341	G	A	28333341	3	1	193	1	0	0	0	0	1	0	0	0	17685	1203	42	3	914	3	ZKSCAN3	6	28333341	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	2276939	28333341	142781726	36	24095											
MOCS1	4337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39895145	39895145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MOCS1	NM_005943	exon1	c.C173T	p.S58F	AAGGCGGAGAAGG	.	49	20	56	0	.	92	A	39895145	G	A	39895145	3	1	193	1	0	0	0	0	1	0	0	0	9690	1174	41	3	1020	3	MOCS1	6	39895145	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	11561804	39895145	131219922	37	24096											
CUL7	9820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43005507	43005507	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CUL7	NM_001168370	exon26	c.C5268T	p.T1756T	ATGGAAGGTGAGG	.	75	11	61	0	.	229	A	43005507	G	A	43005507	2	1	193	1	0	0	0	0	0	0	0	1	4060	987	35	3		3	CUL7	6	43005507	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	3110362	43005507	128109560	38	24097											
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50683121	50683121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TFAP2D	NM_172238	exon2	c.C332T	p.T111I	AGCCCACCGACTT	.	91	55	113	0	.	159	T	50683121	C	T	50683121	3	4	193	1	0	0	0	0	1	0	0	0	15787	507	18	3	338	3	TFAP2D	6	50683121	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	7677614	50683121	120431946	39	24098											
DST	667	bcgsc.ca;mdanderson.org	37	6	56382403	56382403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DST	NM_015548	exon51	c.G10276A	p.D3426N	CAGCATCAGCTGC	.	98	19	81	1	.	523	T	56382403	C	T	56382403	3	4	193	1	0	0	0	0	1	0	0	0	4783	826	29	3	5375	3	DST	6	56382403	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	5699282	56382403	114732664	40	24099			1	24		2	2	13	C		3.721255e-05
DST	667	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56382415	56382415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DST	NM_015548	exon51	c.G10264A	p.D3422N	CTTGGTCAAACTA	.	104	21	72	1	.	523	T	56382415	C	T	56382415	3	4	193	1	0	0	0	0	1	0	0	0	4783	826	29	3	5387	3	DST	6	56382415	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	12	56382415	114732652	41	24100			1	24		2	2	13	C		3.721255e-05
MAP3K5	4217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137041704	137041704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MAP3K5	NM_005923	exon2	c.G472A	p.D158N	AGGCATCGCTCAT	.	70	14	84	0	.	982	T	137041704	C	T	137041704	3	4	193	1	0	0	0	0	1	0	0	0	9253	884	31	1	3768	1	MAP3K5	6	137041704	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	80659289	137041704	34073363	42	24101											
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165827145	165827145	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PDE10A	NM_001130690	exon13	c.G1122A	p.T374T	GTTCCGCGTGGTG	.	90	57	125	0	.	519	T	165827145	C	T	165827145	2	4	193	1	0	0	0	0	0	0	0	1	11630	755	27	1		1	PDE10A	6	165827145	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	28785441	165827145	5287922	43	24102											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20738174	20738174	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ABCB5	NM_001163941	exon17	c.2154+1G>A	.	ATAACCGTAAGTA	.	65	16	81	0	.	158	A	20738174	G	A	20738174	5	1	193	1	0	0	0	0	0	0	1	0	44	1159	40	1	2258	1	ABCB5	7	20738174	Splice_Site	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		20738174	138400489	44	24103											
CHN2	1124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29407574	29407574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CHN2	NM_004067	exon3	c.C115T	p.R39C	GCACCTCGTCCCA	.	37	14	32	0	.	229	T	29407574	C	T	29407574	3	4	193	1	0	0	0	0	1	0	0	0	3363	884	31	1	125	1	CHN2	7	29407574	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	8669400	29407574	129731089	45	24104											
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39472733	39472733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POU6F2	NM_007252	exon8	c.G1084A	p.G362S	GCAAGCGGCACTC	.	110	28	186	1	.	90	A	39472733	G	A	39472733	3	1	193	1	0	0	0	0	1	0	0	0	12285	1116	39	1	1110	1	POU6F2	7	39472733	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	10065159	39472733	119665930	46	24105											
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100361668	100361668	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZAN	.	.	.	.	GCACGTGAAGGCC	.	42	5	41	0	.	142	T	100361668	G	T	100361668	2	4	193	1	0	0	0	0	0	0	0	1	17510	1277	45	3		3	ZAN	7	100361668	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	60888935	100361668	58776995	47	24106											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30705184	30705184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TEX15	NM_031271	exon1	c.G1350T	p.R450S	CTGACCCCTATCT	.	64	47	101	0	.	97	A	30705184	C	A	30705184	3	1	193	1	0	0	0	0	1	0	0	0	15776	622	22	3	7035	3	TEX15	8	30705184	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		30705184	115658838	48	24107											
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101748304	101748304	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COL15A1	NM_001855	exon3	c.C558A	p.P186P	CATCCCCTTCCAG	.	56	23	67	1	.	96	A	101748304	C	A	101748304	2	1	193	1	0	0	0	0	0	0	0	1	3672	668	24	3		3	COL15A1	9	101748304	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		101748304	39465127	49	24108											
KIAA1217	56243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24809143	24809143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KIAA1217	NM_019590	exon11	c.C2269T	p.L757F	GCTTTCCTCCTGC	.	121	12	101	0	.	98	T	24809143	C	T	24809143	3	4	193	1	0	0	0	0	1	0	0	0	8216	681	24	3	2311	3	KIAA1217	10	24809143	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		24809143	110725604	50	24109											
ANKRD30A	91074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37431161	37431161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ANKRD30A	NM_052997	exon7	c.A1168G	p.R390G	AAAGGAAGATCTA	.	168	60	145	1	.	161	G	37431161	A	G	37431161	3	3	193	1	0	0	0	0	1	0	0	0	658	64	3	2	1194	2	ANKRD30A	10	37431161	Missense_Mutation	SNP	A	TCGA-UB-A7MA-01A-11D-A33Q-10	12622018	37431161	98103586	51	24110											
FXYD4	53828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43870995	43870995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FXYD4	NM_001184963	exon6	c.C146A	p.A49D	TCCTGGCCATTGC	.	128	38	96	1	.	90	A	43870995	C	A	43870995	3	1	193	1	0	0	0	0	1	0	0	0	6120	739	26	3	160	3	FXYD4	10	43870995	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	6439834	43870995	91663752	52	24111											
LRIT1	26103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85994095	85994095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	LRIT1	NM_015613	exon3	c.A629G	p.Y210C	AGGTCATAGAGTC	.	168	46	163	0	.	90	C	85994095	T	C	85994095	3	2	193	1	0	0	0	0	1	0	0	0	8947	1406	49	2	1250	2	LRIT1	10	85994095	Missense_Mutation	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	42123100	85994095	49540652	53	24112											
GLUD1	2746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88818994	88818994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GLUD1	NM_005271	exon10	c.T1315C	p.Y439H	CAAAGTAAGATAC	.	141	15	165	0	.	90	G	88818994	A	G	88818994	3	3	193	1	0	0	0	0	1	0	0	0	6476	362	13	2	377	2	GLUD1	10	88818994	Missense_Mutation	SNP	A	TCGA-UB-A7MA-01A-11D-A33Q-10	2824899	88818994	46715753	54	24113											
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106976760	106976760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SORCS3	NM_014978	exon19	c.T2614G	p.F872V	GCAAACTTCAGCC	.	104	19	82	0	.	99	G	106976760	T	G	106976760	3	3	193	1	0	0	0	0	1	0	0	0	14932	1609	56	5	2688	5	SORCS3	10	106976760	Missense_Mutation	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	18157766	106976760	28557987	55	24114											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108412294	108412294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SORCS1	NM_001206572	exon18	c.C2321T	p.S774F	TTATTGGAAACCA	.	100	49	84	0	.	153	A	108412294	G	A	108412294	3	1	193	1	0	0	0	0	1	0	0	0	14930	1174	41	3	1455	3	SORCS1	10	108412294	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	1435534	108412294	27122453	56	24115											
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127797193	127797193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ADAM12	NM_021641	exon8	c.G719A	p.R240Q	ATTAATCGCTGCT	.	112	12	122	0	.	716	T	127797193	C	T	127797193	3	4	193	1	0	0	0	0	1	0	0	0	236	884	31	1	2182	1	ADAM12	10	127797193	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	19384899	127797193	7737554	57	24116											
BDNF	627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27679589	27679589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	BDNF	NM_001143810	exon3	c.G769C	p.G257R	GTTGGCCTTTTGA	.	63	18	95	0	.	514	G	27679589	C	G	27679589	3	3	193	1	0	0	0	0	1	0	0	0	1394	681	24	4	224	4	BDNF	11	27679589	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		27679589	107326927	58	24117											
MARK2	2011	broad.mit.edu;bcgsc.ca	37	11	63662806	63662819	+	Frame_Shift_Del	DEL	AAGAGGTGAGCACT	AAGAGGTGAGCACT	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	AAGAGGTGAGCACT	AAGAGGTGAGCACT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MARK2	NM_001163296	exon2	c.230_234del	p.77_78del	CTGGGAAAGAGGT	.	62	7	124	0	.	766	-	63662819	AAGAGGTGAGCACT	-	63662806	7	5	193	1	0	1	0	1	0	0	0	0	9313	14	1	0	236	0	MARK2	11	63662806	Frame_Shift_Del	DEL	AAGAGGTGAGCACT	TCGA-UB-A7MA-01A-11D-A33Q-10	35983217	63662806	71343710	59	24118											
ZFPL1	7542	broad.mit.edu;bcgsc.ca	37	11	64854466	64854466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZFPL1	NM_006782	exon6	c.548delC	p.A183fs	GCCAGGCCCCCCG	.	45	9	63	0	.	91	-	64854466	C	-	64854466	7	5	193	1	0	1	0	1	0	0	0	0	17653	739	26	0	566	0	ZFPL1	11	64854466	Frame_Shift_Del	DEL	C	TCGA-UB-A7MA-01A-11D-A33Q-10	1191660	64854466	70152050	60	24119											
POLA2	23649	ucsc.edu;bcgsc.ca	37	11	65062035	65062035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POLA2	NM_002689	exon15	c.G1372A	p.E458K	GTGTCCGAGCCCT	.	43	5	70	0	.	227	A	65062035	G	A	65062035	3	1	193	1	0	0	0	0	1	0	0	0	12188	1059	37	1	1430	1	POLA2	11	65062035	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	207569	65062035	69944481	61	24120											
MRPL21	219927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	68658837	68658837	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MRPL21	NM_181514	exon7	c.C580A	p.R194R	TTATCCGGAGGAC	.	47	12	88	0	.	90	T	68658837	G	T	68658837	2	4	193	1	0	0	0	0	0	0	0	1	9787	1115	39	1		1	MRPL21	11	68658837	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	3596802	68658837	66347679	62	24121											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123474218	123474218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRAMD1B	NM_020716	exon8	c.G706A	p.V236M	GACTACGTGCCCC	.	59	11	101	0	.	69	A	123474218	G	A	123474218	3	1	193	1	0	0	0	0	1	0	0	0	6748	1145	40	1	736	1	GRAMD1B	11	123474218	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	54815381	123474218	11532298	63	24122											
JAM3	83700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134014848	134014848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	JAM3	NM_032801	exon5	c.C571T	p.R191C	AGATTTCGCAATT	.	71	22	200	0	.	91	T	134014848	C	T	134014848	3	4	193	1	0	0	0	0	1	0	0	0	7944	884	31	1	724	1	JAM3	11	134014848	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	10540630	134014848	991668	64	24123											
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	71514665	71514666	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PCNX	NM_014982	exon22	c.4302_4303insT	p.L1434fs	CATGCTGTTGGAT	.	74	13	63	0	.	91	T	71514666	-	T	71514665	7	5	193	1	0	1	1	0	0	0	0	0	11591	1364	48	0	4388	0	PCNX	14	71514665	Frame_Shift_Ins	INS	-	TCGA-UB-A7MA-01A-11D-A33Q-10		71514665	35834875	65	24124											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89401573	89401573	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ACAN	NM_001135	exon12	c.G5757A	p.S1919S	GCCCTCGGGAGCA	.	123	64	90	0	.	25	A	89401573	G	A	89401573	2	1	193	1	0	0	0	0	0	0	0	1	117	1103	39	1		1	ACAN	15	89401573	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		89401573	13129819	66	24125											
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84118638	84118638	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MBTPS1	NM_003791	exon10	c.G1236A	p.G412G	ACTGGTCCCTGAG	.	153	39	206	0	.	92	T	84118638	C	T	84118638	2	4	193	1	0	0	0	0	0	0	0	1	9361	842	30	3		3	MBTPS1	16	84118638	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		84118638	6236115	67	24126											
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88781068	88781068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CTU2	NM_001012759	exon12	c.G1275C	p.E425D	GACTGAGACCCGG	.	79	47	132	0	.	23	C	88781068	G	C	88781068	3	2	193	1	0	0	0	0	1	0	0	0	4048	933	33	4	1321	4	CTU2	16	88781068	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	4662430	88781068	1573685	68	24127											
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12905669	12905669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ELAC2	NM_018127	exon14	c.G1226A	p.G409D	GTGGGGCCCTCCT	.	91	50	78	0	.	90	T	12905669	C	T	12905669	3	4	193	1	0	0	0	0	1	0	0	0	5047	739	26	3	1298	3	ELAC2	17	12905669	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		12905669	68289541	69	24128											
DRG2	1819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18003031	18003031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DRG2	NM_001388	exon5	c.T461C	p.V154A	GAGAGGTGCAGAG	.	153	65	101	0	.	91	C	18003031	T	C	18003031	3	2	193	1	0	0	0	0	1	0	0	0	4762	1696	59	2	479	2	DRG2	17	18003031	Missense_Mutation	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10	5097362	18003031	63192179	70	24129											
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48586029	48586029	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MYCBPAP	NM_032133	exon1	c.C123T	p.G41G	GCCGGGCGGCACC	.	242	39	158	0	.	230	T	48586029	C	T	48586029	2	4	193	1	0	0	0	0	0	0	0	1	10019	755	27	1		1	MYCBPAP	17	48586029	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	30582998	48586029	32609181	71	24130											
NOG	9241	broad.mit.edu;mdanderson.org	37	17	54671633	54671633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NOG	NM_005450	exon1	c.G49A	p.V17I	GTGGTGGTCCTGG	.	52	11	41	0	.	90	A	54671633	G	A	54671633	3	1	193	1	0	0	0	0	1	0	0	0	10519	1261	44	3	51	3	NOG	17	54671633	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	6085604	54671633	26523577	72	24131											
PPM1E	22843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57046925	57046925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PPM1E	NM_014906	exon4	c.C809T	p.A270V	ACTTTGCAGTGTT	.	175	27	141	0	.	291	T	57046925	C	T	57046925	3	4	193	1	0	0	0	0	1	0	0	0	12338	710	25	3	823	3	PPM1E	17	57046925	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	2375292	57046925	24148285	73	24132											
RNF213	57674	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78319225	78319225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RNF213	NM_001256071	exon29	c.G7090A	p.D2364N	AATGTCGACTTTG	.	82	31	67	1	.	577	A	78319225	G	A	78319225	3	1	193	1	0	0	0	0	1	0	0	0	13477	1058	37	1	7519	1	RNF213	17	78319225	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	21272300	78319225	2875985	74	24133											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319066	31319066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ASXL3	NM_030632	exon11	c.G1698C	p.E566D	AGTAGAGACCAGT	.	89	17	104	0	.	49	C	31319066	G	C	31319066	3	2	193	1	0	0	0	0	1	0	0	0	1068	933	33	4	1740	4	ASXL3	18	31319066	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		31319066	46758182	75	24134											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8999473	8999473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MUC16	NM_024690	exon56	c.T40702C	p.Y13568H	CCCAGTATAGCTG	.	104	17	100	0	.	566	G	8999473	A	G	8999473	3	3	193	1	0	0	0	0	1	0	0	0	9973	449	16	2	2937	2	MUC16	19	8999473	Missense_Mutation	SNP	A	TCGA-UB-A7MA-01A-11D-A33Q-10		8999473	50129510	76	24135											
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11363512	11363512	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DOCK6	NM_020812	exon3	c.G255T	p.L85L	CAGCAGCAGCTCC	.	97	16	100	0	.	93	A	11363512	C	A	11363512	2	1	193	1	0	0	0	0	0	0	0	1	4691	697	25	3		3	DOCK6	19	11363512	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	2364039	11363512	47765471	77	24136											
JUND	3727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18391859	18391859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	JUND	NM_005354	exon1	c.G436A	p.D146N	GTAAATCCTCCAG	.	44	9	16	0	.	846	T	18391859	C	T	18391859	3	4	193	1	0	0	0	0	1	0	0	0	7971	855	30	3	611	3	JUND	19	18391859	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	7028347	18391859	40737124	78	24137											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36278734	36278734	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ARHGAP33	NM_052948	exon21	c.C2784T	p.I928I	TGAGATCGGGGCA	.	638	30	225	0	.	229	T	36278734	C	T	36278734	2	4	193	1	0	0	0	0	0	0	0	1	882	874	31	1		1	ARHGAP33	19	36278734	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	17886875	36278734	22850249	79	24138											
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40746009	40746009	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	AKT2	NM_001626	exon7	c.C582A	p.V194V	GTGAGCGACTTCA	.	158	123	90	0	.	978	T	40746009	G	T	40746009	2	4	193	1	0	0	0	0	0	0	0	1	480	1045	37	1		1	AKT2	19	40746009	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	4467275	40746009	18382974	80	24139											
MIA	8190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41281480	41281480	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MIA	NM_001202553	exon2	c.C33T	p.I11I	TGTCATCATCTTG	.	122	74	62	0	.	651	T	41281480	C	T	41281480	2	4	193	1	0	0	0	0	0	0	0	1	9563	816	29	3		3	MIA	19	41281480	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	535471	41281480	17847503	81	24140											
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45150523	45150523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PVR	NM_001135769	exon2	c.G108C	p.Q36H	CACCCAGGTGCCC	.	83	12	67	0	.	90	C	45150523	G	C	45150523	3	2	193	1	0	0	0	0	1	0	0	0	12837	991	35	4	114	4	PVR	19	45150523	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	3869043	45150523	13978460	82	24141											
MYBPC2	4606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50957538	50957538	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MYBPC2	NM_004533	exon18	c.G1926A	p.P642P	CCCCCCGGAGGCT	.	44	31	103	0	.	67	A	50957538	G	A	50957538	2	1	193	1	0	0	0	0	0	0	0	1	10012	1103	39	1		1	MYBPC2	19	50957538	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	5807015	50957538	8171445	83	24142											
PSMF1	9491	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1145687	1145687	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PSMF1	NM_006814	exon7	c.A779C	p.H260P	CAGACCATCTCCC	.	111	66	75	1	.	90	C	1145687	A	C	1145687	3	2	193	1	0	0	0	0	1	0	0	0	12710	217	8	5	805	5	PSMF1	20	1145687	Missense_Mutation	SNP	A	TCGA-UB-A7MA-01A-11D-A33Q-10		1145687	61879833	84	24143											
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	7915180	7915180	+	Silent	SNP	C	C	A	rs200105698	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HAO1	NM_017545	exon2	c.G240T	p.T80T	CATGGCCGTAGCC	.	92	17	89	0	C|0.999;G|0.001	93	A	7915180	C	A	7915180	2	1	193	1	0	0	0	0	0	0	0	1	6951	639	23	1		1	HAO1	20	7915180	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	6769493	7915180	55110340	85	24144											
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25434223	25434223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NINL	NM_025176	exon24	c.C4013G	p.A1338G	AGGTGGGCGTTCT	.	115	26	126	0	.	94	C	25434223	G	C	25434223	3	2	193	1	0	0	0	0	1	0	0	0	10420	1203	42	4	139	4	NINL	20	25434223	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	17519043	25434223	37591297	86	24145											
XKR7	343702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30584708	30584708	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	XKR7	NM_001011718	exon3	c.C1188T	p.A396A	GAACGCCGCGCTC	.	78	17	69	0	.	137	T	30584708	C	T	30584708	2	4	193	1	0	0	0	0	0	0	0	1	17433	639	23	1		1	XKR7	20	30584708	Silent	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	5150485	30584708	32440812	87	24146											
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130323	45130323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZNF334	NM_018102	exon5	c.C1655G	p.T552S	CAGTAGGTTCTCC	.	77	15	60	0	.	92	C	45130323	G	C	45130323	3	2	193	1	0	0	0	0	1	0	0	0	17848	1261	44	4	391	4	ZNF334	20	45130323	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	14545615	45130323	17895197	88	24147											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46268408	46268408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCOA3	NM_181659	exon15	c.C2795G	p.P932R	TGGAACCTATGAA	.	161	46	102	0	.	229	G	46268408	C	G	46268408	3	3	193	1	0	0	0	0	1	0	0	0	10230	681	24	4	2875	4	NCOA3	20	46268408	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10	1138085	46268408	16757112	89	24148											
CASS4	57091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55012412	55012412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CASS4	NM_020356	exon2	c.G229C	p.D77H	GCTGCAGACAGGC	.	149	55	140	1	.	25	C	55012412	G	C	55012412	3	2	193	1	0	0	0	0	1	0	0	0	2683	942	33	4	235	4	CASS4	20	55012412	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	8744004	55012412	8013108	90	24149											
CRYZL1	9946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34994363	34994363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CRYZL1	NM_145858	exon4	c.A156C	p.E52D	CTTCATTTCTGCC	.	313	119	387	0	.	90	G	34994363	T	G	34994363	3	3	193	1	0	0	0	0	1	0	0	0	3923	1838	64	5	933	5	CRYZL1	21	34994363	Missense_Mutation	SNP	T	TCGA-UB-A7MA-01A-11D-A33Q-10		34994363	13135532	91	24150											
TBX1	6899	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19751710	19751710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TBX1	NM_080647	exon5	c.C545T	p.A182V	TGGTGGCGGGGAA	.	55	28	63	2	.	154	T	19751710	C	T	19751710	3	4	193	1	0	0	0	0	1	0	0	0	15647	768	27	1	559	1	TBX1	22	19751710	Missense_Mutation	SNP	C	TCGA-UB-A7MA-01A-11D-A33Q-10		19751710	31552856	92	24151											
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24628913	24628913	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GGT5	NM_001099781	exon4	c.C474G	p.P158P	CGCCCAGGGCAGG	.	78	36	84	0	.	71	C	24628913	G	C	24628913	2	2	193	1	0	0	0	0	0	0	0	1	6362	987	35	4		4	GGT5	22	24628913	Silent	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	4877203	24628913	26675653	93	24152											
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42610029	42610029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TCF20	NM_181492	exon1	c.C1283G	p.P428R	GAATTAGGACTGG	.	111	26	119	0	.	95	C	42610029	G	C	42610029	3	2	193	1	0	0	0	0	1	0	0	0	15687	1000	35	4	4637	4	TCF20	22	42610029	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	17981116	42610029	8694537	94	24153											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149696	34149696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FAM47A	NM_203408	exon1	c.C700T	p.H234Y	GGAGATGGGACAC	.	101	22	101	0	.	134	A	34149696	G	A	34149696	3	1	193	1	0	0	0	0	1	0	0	0	5569	1348	47	3	1679	3	FAM47A	23	34149696	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10		34149696	121120864	95	24154											
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122598767	122598767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRIA3	NM_000828	exon13	c.G2128A	p.E710K	TCAGCGGAGCCAT	.	233	104	317	0	.	134	A	122598767	G	A	122598767	3	1	193	1	0	0	0	0	1	0	0	0	6769	1175	41	3	2178	3	GRIA3	23	122598767	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	88449071	122598767	32671793	96	24155											
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150348392	150348392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GPR50	NM_004224	exon2	c.G337T	p.V113F	AGTGTGGTCGGCT	.	193	93	223	0	.	176	T	150348392	G	T	150348392	3	4	193	1	0	0	0	0	1	0	0	0	6697	1261	44	3	343	3	GPR50	23	150348392	Missense_Mutation	SNP	G	TCGA-UB-A7MA-01A-11D-A33Q-10	27749625	150348392	4922168	97	24156											
TNFRSF4	7293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1146948	1146948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF4	NM_003327	exon7	c.T821A	p.L274Q	TTGGCCAGGGTGG	.	52	23	85	0	.	227	T	1146948	A	T	1146948	3	4	194	1	0	0	0	0	1	0	0	0	16294	188	7	4	16	4	TNFRSF4	1	1146948	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		1146948	248103673	1	24157											
KIAA1751	85452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1888169	1888169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1751	NM_001080484	exon17	c.A1906T	p.T636S	GAGACGTGGTCTC	.	100	47	133	0	.	69	A	1888169	T	A	1888169	3	1	194	1	0	0	0	0	1	0	0	0	8256	1696	59	4	390	4	KIAA1751	1	1888169	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	741221	1888169	247362452	2	24158											
KIAA1751	85452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1900247	1900247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1751	NM_001080484	exon11	c.A1072G	p.R358G	GCTTTCTGAGCTT	.	43	21	51	0	.	69	C	1900247	T	C	1900247	3	2	194	1	0	0	0	0	1	0	0	0	8256	1588	55	2	1248	2	KIAA1751	1	1900247	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	12078	1900247	247350374	3	24159											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2409915	2409915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCH2	NM_014638	exon2	c.T125C	p.V42A	GTCCAGTGGAGCG	.	41	23	54	0	.	229	C	2409915	T	C	2409915	3	2	194	1	0	0	0	0	1	0	0	0	12038	1710	59	2	131	2	PLCH2	1	2409915	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	509668	2409915	246840706	4	24160											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3102902	3102902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM16	NM_022114	exon2	c.T251A	p.F84Y	CAGACTTCGAGCT	.	121	51	190	0	.	660	A	3102902	T	A	3102902	3	1	194	1	0	0	0	0	1	0	0	0	12457	1783	62	4	257	4	PRDM16	1	3102902	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	692987	3102902	246147719	5	24161											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3319469	3319469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM16	NM_022114	exon6	c.T791A	p.L264Q	AGGGCCTGGCTGA	.	167	89	212	0	.	660	A	3319469	T	A	3319469	3	1	194	1	0	0	0	0	1	0	0	0	12457	1580	55	4	813	4	PRDM16	1	3319469	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	216567	3319469	245931152	6	24162											
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3680278	3680278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC27	NM_152492	exon8	c.G1330T	p.A444S	GTGATTGCGTCTT	.	177	24	278	0	.	91	T	3680278	G	T	3680278	3	4	194	1	0	0	0	0	1	0	0	0	2801	1319	46	3	1360	3	CCDC27	1	3680278	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	360809	3680278	245570343	7	24163											
CCDC27	148870	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3683112	3683112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC27	NM_152492	exon9	c.G1466A	p.R489Q	ACCTCCGAGAAGA	.	109	9	122	1	.	91	A	3683112	G	A	3683112	3	1	194	1	0	0	0	0	1	0	0	0	2801	1058	37	1	1500	1	CCDC27	1	3683112	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2834	3683112	245567509	8	24164											
NPHP4	261734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	5967225	5967225	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPHP4	NM_015102	exon13	c.A1561T	p.R521W	TAGGCCTGGCCAA	.	101	49	149	0	.	515	A	5967225	T	A	5967225	3	1	194	1	0	0	0	0	1	0	0	0	10581	1579	55	4	2791	4	NPHP4	1	5967225	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2284113	5967225	243283396	9	24165											
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6639185	6639185	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAS1R1	NM_138697	exon6	c.C2067T	p.A689A	AGCGGCCCAGCTG	.	92	62	113	0	.	516	T	6639185	C	T	6639185	2	4	194	1	0	0	0	0	0	0	0	1	15559	610	22	3		3	TAS1R1	1	6639185	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	671960	6639185	242611436	10	24166											
SLC45A1	50651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	8390821	8390821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC45A1	NM_001080397	exon4	c.A1268T	p.E423V	GCAGAGAGGGTGC	.	73	23	98	0	.	494	T	8390821	A	T	8390821	3	4	194	1	0	0	0	0	1	0	0	0	14640	304	11	4	1282	4	SLC45A1	1	8390821	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1751636	8390821	240859800	11	24167											
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9795215	9795215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLSTN1	NM_001009566	exon14	c.C1901T	p.T634I	ATGCAGGTGGCCT	.	37	15	59	0	.	523	A	9795215	G	A	9795215	3	1	194	1	0	0	0	0	1	0	0	0	3561	1261	44	3	1068	3	CLSTN1	1	9795215	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1404394	9795215	239455406	12	24168											
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10221232	10221232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE4B	NM_001105562	exon23	c.T3086C	p.M1029T	TAAACATGTTGAT	.	123	50	120	0	.	229	C	10221232	T	C	10221232	3	2	194	1	0	0	0	0	1	0	0	0	16880	1464	51	2	3176	2	UBE4B	1	10221232	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	426017	10221232	239029389	13	24169											
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11589857	11589857	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTCHD2	NM_020780	exon15	c.T2943C	p.R981R	GGCCCGTCTCTCA	.	63	35	79	0	.	209	C	11589857	T	C	11589857	2	2	194	1	0	0	0	0	0	0	0	1	12733	1654	58	2		2	PTCHD2	1	11589857	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1368625	11589857	237660764	14	24170											
MIIP	60672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12082339	12082339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIIP	NM_021933	exon3	c.A302T	p.Q101L	AATGCCAGCACCA	.	86	51	128	0	.	91	T	12082339	A	T	12082339	3	4	194	1	0	0	0	0	1	0	0	0	9585	188	7	4	308	4	MIIP	1	12082339	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	492482	12082339	237168282	15	24171											
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12567012	12567012	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VPS13D	NM_015378	exon69	c.A12900G	p.L4300L	TTTCCTAGAAGTC	.	105	37	130	0	.	95	G	12567012	A	G	12567012	2	3	194	1	0	0	0	0	0	0	0	1	17189	407	15	2		2	VPS13D	1	12567012	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	484673	12567012	236683609	16	24172											
PRAMEF2	65122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12921328	12921328	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRAMEF2	NM_023014	exon4	c.G1119C	p.L373L	TGGCCTGAGCTGC	.	161	16	207	0	.	68	C	12921328	G	C	12921328	2	2	194	1	0	0	0	0	0	0	0	1	12435	1277	45	4		4	PRAMEF2	1	12921328	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	354316	12921328	236329293	17	24173											
PADI1	29943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17556654	17556654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PADI1	NM_013358	exon9	c.A1004T	p.K335M	ACTGCAAGCTGAC	.	50	15	56	0	.	68	T	17556654	A	T	17556654	3	4	194	1	0	0	0	0	1	0	0	0	11377	72	3	4	1038	4	PADI1	1	17556654	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4635326	17556654	231693967	18	24174											
PAX7	5081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19071418	19071418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAX7	NM_001135254	exon9	c.T1513G	p.Y505D	CAGGCCTACTAGG	.	112	45	131	0	.	1630	G	19071418	T	G	19071418	3	3	194	1	0	0	0	0	1	0	0	0	11484	1522	53	5	1708	5	PAX7	1	19071418	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1514764	19071418	230179203	19	24175											
KIF17	57576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21013989	21013989	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF17	NM_020816	exon8	c.A1830G	p.L610L	CAGGCCTAGTAAC	.	62	29	65	0	.	94	C	21013989	T	C	21013989	2	2	194	1	0	0	0	0	0	0	0	1	8279	1509	53	2		2	KIF17	1	21013989	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1942571	21013989	228236632	20	24176											
LDLRAD2	401944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	22141096	22141096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LDLRAD2	NM_001013693	exon2	c.C291A	p.N97K	GCTCAACACCTCC	.	90	47	74	0	.	90	A	22141096	C	A	22141096	3	1	194	1	0	0	0	0	1	0	0	0	8706	477	17	3	297	3	LDLRAD2	1	22141096	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1127107	22141096	227109525	21	24177											
HNRNPR	10236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23637344	23637344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	HNRPR,mouth,carcinoma,0	HNRNPR	NM_001102398	exon11	c.G1514T	p.R505I	CCTCCTCTTCCTC	.	50	14	45	0	.	24	A	23637344	C	A	23637344	3	1	194	1	0	0	0	0	1	0	0	0	7272	913	32	3	400	3	HNRNPR	1	23637344	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1496248	23637344	225613277	22	24178											
CNR2	1269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24201051	24201051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNR2	NM_001841	exon2	c.A1057G	p.R353G	GATCTCTGGAATC	.	58	22	50	0	.	228	C	24201051	T	C	24201051	3	2	194	1	0	0	0	0	1	0	0	0	3632	1588	55	2	29	2	CNR2	1	24201051	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	563707	24201051	225049570	23	24179											
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24996026	24996026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM1	NM_005839	exon14	c.A2152G	p.T718A	CCAAGTACTAGGC	.	243	115	327	0	.	93	G	24996026	A	G	24996026	3	3	194	1	0	0	0	0	1	0	0	0	15167	391	14	2	2206	2	SRRM1	1	24996026	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	794975	24996026	224254595	24	24180											
LIN28A	79727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26751824	26751824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LIN28A	NM_024674	exon3	c.T259A	p.L87M	CGGAGCTTGAAGG	.	153	54	171	2	.	226	A	26751824	T	A	26751824	3	1	194	1	0	0	0	0	1	0	0	0	8805	1606	56	4	269	4	LIN28A	1	26751824	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1755798	26751824	222498797	25	24181											
ZDHHC18	84243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27177682	27177682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZDHHC18	NM_032283	exon6	c.A896T	p.H299L	GGTTTCACACGTA	.	95	38	111	0	.	90	T	27177682	A	T	27177682	3	4	194	1	0	0	0	0	1	0	0	0	17605	159	6	4	918	4	ZDHHC18	1	27177682	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	425858	27177682	222072939	26	24182											
TMEM222	84065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	27648780	27648780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM222	NM_032125	exon1	c.A92T	p.E31V	CGGCCGAGACGGA	.	182	101	196	0	.	90	T	27648780	A	T	27648780	3	4	194	1	0	0	0	0	1	0	0	0	16142	304	11	4	94	4	TMEM222	1	27648780	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	471098	27648780	221601841	27	24183											
RCC1	1104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28864505	28864505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RCC1	NM_001048194	exon11	c.A1345G	p.K449E	AAGGACAAAGAAC	.	37	14	66	0	.	228	G	28864505	A	G	28864505	3	3	194	1	0	0	0	0	1	0	0	0	13173	131	5	2	1383	2	RCC1	1	28864505	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1215725	28864505	220386116	28	24184											
COL16A1	1307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32124125	32124125	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL16A1	NM_001856	exon64	c.A3984C	p.P1328P	CTGGCCTGGGAGG	.	50	23	73	1	.	98	G	32124125	T	G	32124125	2	3	194	1	0	0	0	0	0	0	0	1	3673	1567	55	5		5	COL16A1	1	32124125	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3259620	32124125	217126496	29	24185											
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32161363	32161363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL16A1	NM_001856	exon10	c.A944T	p.E315V	CTTACCTCATCGG	.	86	38	130	0	.	98	A	32161363	T	A	32161363	3	1	194	1	0	0	0	0	1	0	0	0	3673	1565	54	4	4118	4	COL16A1	1	32161363	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	37238	32161363	217089258	30	24186											
LCK	3932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	32742349	32742349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCK	NM_005356	exon9	c.A926T	p.Q309L	TCACCCAGGAGCC	.	45	31	60	0	.	1378	T	32742349	A	T	32742349	3	4	194	1	0	0	0	0	1	0	0	0	8676	188	7	4	956	4	LCK	1	32742349	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	580986	32742349	216508272	31	24187											
ADC	113451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33557811	33557811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADC	NM_052998	exon6	c.A440T	p.H147L	AGAGCCACCCCAG	.	166	69	219	0	.	92	T	33557811	A	T	33557811	3	4	194	1	0	0	0	0	1	0	0	0	287	159	6	4	450	4	ADC	1	33557811	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	815462	33557811	215692810	32	24188											
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33836103	33836103	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHC2	NM_198040	exon4	c.T495A	p.A165A	CTGCTGAGCGATG	.	51	20	56	0	.	227	T	33836103	A	T	33836103	2	4	194	1	0	0	0	0	0	0	0	1	11817	291	11	4		4	PHC2	1	33836103	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	278292	33836103	215414518	33	24189											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34123600	34123600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon27	c.T4273A	p.C1425S	TCACACAGCTGAT	.	52	26	81	0	.	103	T	34123600	A	T	34123600	3	4	194	1	0	0	0	0	1	0	0	0	3945	188	7	4	6362	4	CSMD2	1	34123600	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	287497	34123600	215127021	34	24190											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	34128580	34128580	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon26	c.A4045T	p.K1349X	GGTCCTTGGGCAG	.	96	56	136	0	.	103	A	34128580	T	A	34128580	4	1	194	1	0	0	0	0	0	1	0	0	3945	1821	63	4	6594	4	CSMD2	1	34128580	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4980	34128580	215122041	35	24191											
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34190207	34190207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon18	c.A2674T	p.S892C	CACAGCTGAAGGT	.	109	41	139	1	.	103	A	34190207	T	A	34190207	3	1	194	1	0	0	0	0	1	0	0	0	3945	1580	55	4	7997	4	CSMD2	1	34190207	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	61627	34190207	215060414	36	24192											
C1orf94	84970	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	34662932	34662932	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf94	NM_001134734	exon2	c.G427T	p.E143X	TCTGGGGAGCTGG	.	72	31	108	1	.	90	T	34662932	G	T	34662932	4	4	194	1	0	0	0	0	0	1	0	0	2071	1175	41	3	433	3	C1orf94	1	34662932	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	472725	34662932	214587689	37	24193											
GJB5	2709	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	35223306	35223306	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJB5	NM_005268	exon2	c.T375A	p.G125G	GCGGGGTGGGCTC	.	66	36	83	2	.	91	A	35223306	T	A	35223306	2	1	194	1	0	0	0	0	0	0	0	1	6411	1683	59	4		4	GJB5	1	35223306	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	560374	35223306	214027315	38	24194											
GJA4	2701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35259856	35259856	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJA4	NM_002060	exon2	c.C42A	p.V14V	CCAGGTCCAGGAG	.	79	30	84	0	.	90	A	35259856	C	A	35259856	2	1	194	1	0	0	0	0	0	0	0	1	6403	842	30	3		3	GJA4	1	35259856	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	36550	35259856	213990765	39	24195											
TEKT2	27285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36551473	36551473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEKT2	NM_014466	exon4	c.A319T	p.N107Y	GCCAAGAACCTGC	.	115	43	154	0	.	90	T	36551473	A	T	36551473	3	4	194	1	0	0	0	0	1	0	0	0	15750	246	9	4	329	4	TEKT2	1	36551473	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1291617	36551473	212699148	40	24196											
TRAPPC3	27095	broad.mit.edu;bcgsc.ca	37	1	36605744	36605744	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAPPC3	NM_001270894	exon2	c.C66G	p.T22T	ACCATAGGTCAGG	.	166	12	206	0	.	90	C	36605744	G	C	36605744	2	2	194	1	0	0	0	0	0	0	0	1	16457	987	35	4		4	TRAPPC3	1	36605744	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	54271	36605744	212644877	41	24197											
MTF1	4520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38288109	38288109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTF1	NM_005955	exon9	c.A1451G	p.E484G	AGAAACTCTTGAT	.	55	28	81	0	.	92	C	38288109	T	C	38288109	3	2	194	1	0	0	0	0	1	0	0	0	9922	1551	54	2	822	2	MTF1	1	38288109	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1682365	38288109	210962512	42	24198											
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40769263	40769263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon28	c.G1487A	p.G496D	CGAGGGCCGGGGG	.	41	20	36	0	.	92	T	40769263	C	T	40769263	3	4	194	1	0	0	0	0	1	0	0	0	3708	739	26	3	602	3	COL9A2	1	40769263	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2481154	40769263	208481358	43	24199											
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40777173	40777173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon10	c.T518C	p.L173P	CTCACCAGGAAAT	.	46	20	65	0	.	92	G	40777173	A	G	40777173	3	3	194	1	0	0	0	0	1	0	0	0	3708	202	7	2	1643	2	COL9A2	1	40777173	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7910	40777173	208473448	44	24200											
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40777786	40777786	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon9	c.364-2A>T	.	GGCCCCTGGGGAG	.	63	22	88	0	.	92	A	40777786	T	A	40777786	5	1	194	1	0	0	0	0	0	0	1	0	3708	1594	55	4	1807	4	COL9A2	1	40777786	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	613	40777786	208472835	45	24201											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	41990547	41990547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIVEP3	NM_024503	exon6	c.G5242A	p.G1748S	CGCGGCCTCGCAC	.	93	46	108	0	.	157	T	41990547	C	T	41990547	3	4	194	1	0	0	0	0	1	0	0	0	7188	681	24	3	1994	3	HIVEP3	1	41990547	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1212761	41990547	207260074	46	24202											
ERI3	79033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44713653	44713653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ERI3	NM_024066	exon8	c.G889T	p.G297C	TGAGGCCCTTGTT	.	64	29	74	0	.	92	A	44713653	C	A	44713653	3	1	194	1	0	0	0	0	1	0	0	0	5229	623	22	3	132	3	ERI3	1	44713653	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2723106	44713653	204536968	47	24203											
STIL	6491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47717102	47717102	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STIL	NM_001048166	exon17	c.A3573G	p.A1191A	CGTATCTGCGTTG	.	85	44	97	0	.	659	C	47717102	T	C	47717102	2	2	194	1	0	0	0	0	0	0	0	1	15281	1567	55	2		2	STIL	1	47717102	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3003449	47717102	201533519	48	24204											
SPATA6	54558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	48764441	48764441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA6	NM_019073	exon13	c.A1411T	p.R471W	AGTTCCTGTACAT	.	79	23	111	0	.	91	A	48764441	T	A	48764441	3	1	194	1	0	0	0	0	1	0	0	0	15012	1579	55	4	59	4	SPATA6	1	48764441	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1047339	48764441	200486180	49	24205											
EPS15	2060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51864724	51864724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPS15	NM_001981	exon20	c.A2032G	p.N678D	TATTGTTGGCTGC	.	46	21	49	0	.	1082	C	51864724	T	C	51864724	3	2	194	1	0	0	0	0	1	0	0	0	5192	1812	63	2	682	2	EPS15	1	51864724	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3100283	51864724	197385897	50	24206											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62456026	62456026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INADL	NM_176877	exon28	c.A3857T	p.E1286V	GAGATGAACTCTT	.	95	39	76	0	.	94	T	62456026	A	T	62456026	3	4	194	1	0	0	0	0	1	0	0	0	7731	246	9	4	3963	4	INADL	1	62456026	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10591302	62456026	186794595	51	24207											
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62733992	62733992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KANK4	NM_181712	exon5	c.C2198T	p.P733L	TCCCCAGGCCCAC	.	56	25	73	0	.	74	A	62733992	G	A	62733992	3	1	194	1	0	0	0	0	1	0	0	0	7979	1000	35	3	813	3	KANK4	1	62733992	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	277966	62733992	186516629	52	24208											
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65142576	65142576	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACHD1	NM_020925	exon22	c.2823-2A>G	.	CTGCACAGAAACC	.	202	90	197	0	.	92	G	65142576	A	G	65142576	5	3	194	1	0	0	0	0	0	0	1	0	2537	202	7	2	2907	2	CACHD1	1	65142576	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2408584	65142576	184108045	53	24209											
DNAJC6	9829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65852603	65852603	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC6	NM_001256864	exon8	c.A1104G	p.L368L	CCGGCTACAGGCT	.	118	47	122	0	.	272	G	65852603	A	G	65852603	2	3	194	1	0	0	0	0	0	0	0	1	4653	378	14	2		2	DNAJC6	1	65852603	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	710027	65852603	183398018	54	24210											
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	67148048	67148048	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGIP1	NM_032291	exon15	c.C1311T	p.T437T	GACCACCAGTGGT	.	159	60	162	0	.	93	T	67148048	C	T	67148048	2	4	194	1	0	0	0	0	0	0	0	1	14206	581	21	3		3	SGIP1	1	67148048	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1295445	67148048	182102573	55	24211											
IL23R	149233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67666515	67666515	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL23R	NM_144701	exon5	c.T587A	p.V196D	TTTGGGTCCAAGC	.	196	101	203	0	.	90	A	67666515	T	A	67666515	3	1	194	1	0	0	0	0	1	0	0	0	7676	1667	58	4	601	4	IL23R	1	67666515	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	518467	67666515	181584106	56	24212											
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70502271	70502271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC7	NM_020794	exon18	c.C2138T	p.A713V	CAACAGCTAAAGA	.	132	61	115	1	.	163	T	70502271	C	T	70502271	3	4	194	1	0	0	0	0	1	0	0	0	9020	797	28	3	2208	3	LRRC7	1	70502271	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2835756	70502271	178748350	57	24213											
LRRC40	55631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70616864	70616864	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC40	NM_017768	exon13	c.A1464C	p.P488P	TTCTTCTGGCAAA	.	240	97	244	0	.	91	G	70616864	T	G	70616864	2	3	194	1	0	0	0	0	0	0	0	1	8998	1567	55	5		5	LRRC40	1	70616864	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	114593	70616864	178633757	58	24214											
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71418661	71418661	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTGER3	NM_198718	exon4	c.A1186C	p.R396R	CTTCTCTGTTCAG	.	42	13	55	0	.	660	G	71418661	T	G	71418661	2	3	194	1	0	0	0	0	0	0	0	1	12744	1588	55	5		5	PTGER3	1	71418661	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	801797	71418661	177831960	59	24215											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75065565	75065565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf173	NM_001002912	exon11	c.A1540G	p.N514D	CTTCATTAGATTT	.	110	54	123	0	.	94	C	75065565	T	C	75065565	3	2	194	1	0	0	0	0	1	0	0	0	2014	1754	61	2	3068	2	C1orf173	1	75065565	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3646904	75065565	174185056	60	24216											
TYW3	127253	bcgsc.ca;mdanderson.org	37	1	75229761	75229761	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TYW3	NM_138467	exon6	c.A744G	p.L248L	TGATCTAGGAATC	.	126	52	121	2	.	70	G	75229761	A	G	75229761	2	3	194	1	0	0	0	0	0	0	0	1	16817	407	15	2		2	TYW3	1	75229761	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	164196	75229761	174020860	61	24217											
LPAR3	23566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85331282	85331282	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPAR3	NM_012152	exon2	c.T522G	p.S174S	GCAGGCAGAGATG	.	98	39	99	0	.	502	C	85331282	A	C	85331282	2	2	194	1	0	0	0	0	0	0	0	1	8906	175	7	5		5	LPAR3	1	85331282	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10101521	85331282	163919339	62	24218											
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85647970	85647970	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYDE2	NM_032184	exon3	c.A2355G	p.R785R	AAGACCTCTAGGT	.	181	10	209	0	.	70	C	85647970	T	C	85647970	2	2	194	1	0	0	0	0	0	0	0	1	15433	1548	54	2		2	SYDE2	1	85647970	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	316688	85647970	163602651	63	24219											
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86961307	86961307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLCA1	NM_001285	exon12	c.G2062T	p.V688L	CGGAGAGTGATAC	.	87	43	95	0	.	91	T	86961307	G	T	86961307	3	4	194	1	0	0	0	0	1	0	0	0	3457	1029	36	3	2108	3	CLCA1	1	86961307	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1313337	86961307	162289314	64	24220											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91403139	91403139	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon4	c.A3591T	p.T1197T	TCTTGCTGTCTGA	.	71	27	109	0	.	155	A	91403139	T	A	91403139	2	1	194	1	0	0	0	0	0	0	0	1	18057	1567	55	4		4	ZNF644	1	91403139	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4441832	91403139	157847482	65	24221											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91405810	91405810	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon3	c.A1101T	p.P367P	CTTATCTGGGTTA	.	90	32	86	0	.	155	A	91405810	T	A	91405810	2	1	194	1	0	0	0	0	0	0	0	1	18057	1567	55	4		4	ZNF644	1	91405810	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2671	91405810	157844811	66	24222											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91406111	91406111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon3	c.A800T	p.Q267L	AGAAATTGAATGA	.	79	42	91	0	.	155	A	91406111	T	A	91406111	3	1	194	1	0	0	0	0	1	0	0	0	18057	1812	63	4	3199	4	ZNF644	1	91406111	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	301	91406111	157844510	67	24223											
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91859872	91859872	+	Missense_Mutation	SNP	T	T	A	rs201897123	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HFM1	NM_001017975	exon4	c.A272T	p.Q91L	GCAAACTGGAATT	.	170	71	173	0	T|0.999;C|0.001	112	A	91859872	T	A	91859872	3	1	194	1	0	0	0	0	1	0	0	0	7083	1580	55	4	4179	4	HFM1	1	91859872	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	453761	91859872	157390749	68	24224											
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92442752	92442752	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRDT	NM_001242806	exon6	c.T783C	p.S261S	AGATTCTCAGCAA	.	202	78	238	0	.	374	C	92442752	T	C	92442752	2	2	194	1	0	0	0	0	0	0	0	1	1508	1538	54	2		2	BRDT	1	92442752	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	582880	92442752	156807869	69	24225											
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	99771914	99771914	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPPR4	NM_014839	exon7	c.1640delC	p.S547fs	GCACCTCCCCCAA	.	69	36	101	0	.	93	-	99771914	C	-	99771914	7	5	194	1	0	1	0	1	0	0	0	0	8927	855	30	0	1666	0	LPPR4	1	99771914	Frame_Shift_Del	DEL	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7329162	99771914	149478707	70	24226											
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	101186271	101186271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VCAM1	NM_001078	exon2	c.A304T	p.R102W	GAATCTAGGAAAT	.	111	52	112	0	.	90	T	101186271	A	T	101186271	3	4	194	1	0	0	0	0	1	0	0	0	17134	411	15	4	310	4	VCAM1	1	101186271	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1414357	101186271	148064350	71	24227											
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	102270334	102270334	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OLFM3	NM_058170	exon6	c.T837C	p.N279N	TGAGCCATTGTAG	.	90	45	104	0	.	93	G	102270334	A	G	102270334	2	3	194	1	0	0	0	0	0	0	0	1	10854	214	8	2		2	OLFM3	1	102270334	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1084063	102270334	146980287	72	24228											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103461545	103461545	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A1	NM_080629	exon27	c.G2331A	p.K777K	CGTTACCTTTACT	.	153	64	181	0	.	586	T	103461545	C	T	103461545	2	4	194	1	0	0	0	0	0	0	0	1	3667	695	24	3		3	COL11A1	1	103461545	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1191211	103461545	145789076	73	24229											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103484377	103484377	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A1	NM_080629	exon10	c.T1383A	p.P461P	TACTGCAGGTCCT	.	506	252	547	1	.	586	T	103484377	A	T	103484377	2	4	194	1	0	0	0	0	0	0	0	1	3667	175	7	4		4	COL11A1	1	103484377	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	22832	103484377	145766244	74	24230											
FAM102B	284611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109171192	109171192	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM102B	NM_001010883	exon8	c.A828T	p.S276S	AGCTTCAGAAAAA	.	128	65	129	0	.	135	T	109171192	A	T	109171192	2	4	194	1	0	0	0	0	0	0	0	1	5383	175	7	4		4	FAM102B	1	109171192	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5686815	109171192	140079429	75	24231											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109321954	109321954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STXBP3	NM_007269	exon9	c.C731A	p.P244H	TTGATCCTGTGTC	.	96	42	90	0	.	93	A	109321954	C	A	109321954	3	1	194	1	0	0	0	0	1	0	0	0	15353	681	24	3	765	3	STXBP3	1	109321954	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	150762	109321954	139928667	76	24232											
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109553760	109553760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR47	NM_001142550	exon5	c.A929G	p.Q310R	GCTGATTGAGGTC	.	77	29	101	0	.	91	C	109553760	T	C	109553760	3	2	194	1	0	0	0	0	1	0	0	0	17297	1812	63	2	1898	2	WDR47	1	109553760	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	231806	109553760	139696861	77	24233											
PSRC1	84722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109824547	109824547	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSRC1	NM_001032291	exon4	c.A213C	p.P71P	CTTCTCTGGACTG	.	114	43	136	0	.	90	G	109824547	T	G	109824547	2	3	194	1	0	0	0	0	0	0	0	1	12719	1567	55	5		5	PSRC1	1	109824547	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	270787	109824547	139426074	78	24234											
KCNA3	3738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	111216504	111216504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA3	NM_002232	exon1	c.C928A	p.L310M	CCAGCAGTTCGAA	.	68	33	47	0	.	95	T	111216504	G	T	111216504	3	4	194	1	0	0	0	0	1	0	0	0	8004	1020	36	3	803	3	KCNA3	1	111216504	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1391957	111216504	138034117	79	24235											
DDX20	11218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112305597	112305597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX20	NM_007204	exon10	c.A1280G	p.Q427R	TTGCCCAGAAATG	.	74	9	68	0	.	227	G	112305597	A	G	112305597	3	3	194	1	0	0	0	0	1	0	0	0	4348	188	7	2	1318	2	DDX20	1	112305597	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1089093	112305597	136945024	80	24236											
PTPN22	26191	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	114394650	114394650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPN22	NM_015967	exon10	c.A827C	p.Q276P	CATACCTGCGTTT	.	41	14	47	0	.	227	G	114394650	T	G	114394650	3	3	194	1	0	0	0	0	1	0	0	0	12787	1594	55	5	1667	5	PTPN22	1	114394650	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2089053	114394650	134855971	81	24237											
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115218238	115218238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AMPD1	NM_000036	exon12	c.A1691T	p.Q564L	CACTCCTGGGGCT	.	58	31	50	0	.	293	A	115218238	T	A	115218238	3	1	194	1	0	0	0	0	1	0	0	0	585	1580	55	4	671	4	AMPD1	1	115218238	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	823588	115218238	134032383	82	24238											
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115275369	115275369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSDE1	NM_001242891	exon11	c.A1044T	p.K348N	CGTATCTTTGTCT	.	220	106	237	0	.	227	A	115275369	T	A	115275369	3	1	194	1	0	0	0	0	1	0	0	0	3929	1606	56	4	1534	4	CSDE1	1	115275369	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	57131	115275369	133975252	83	24239											
NGF	4803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115829387	115829387	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NGF	NM_002506	exon3	c.A30T	p.T10T	AAAAGCTGTGATC	.	63	31	85	0	.	1083	A	115829387	T	A	115829387	2	1	194	1	0	0	0	0	0	0	0	1	10395	1567	55	4		4	NGF	1	115829387	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	554018	115829387	133421234	84	24240											
CASQ2	845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116244009	116244009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CASQ2	NM_001232	exon11	c.T1053A	p.D351E	TGGAAGATCGTCA	.	97	39	105	0	.	91	T	116244009	A	T	116244009	3	4	194	1	0	0	0	0	1	0	0	0	2681	330	12	4	150	4	CASQ2	1	116244009	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	414622	116244009	133006612	85	24241											
NHLH2	4808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116380638	116380638	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NHLH2	NM_001111061	exon2	c.T356A	p.L119Q	AGGCGCAGGATCT	.	50	19	46	0	.	90	T	116380638	A	T	116380638	3	4	194	1	0	0	0	0	1	0	0	0	10404	188	7	4	55	4	NHLH2	1	116380638	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	136629	116380638	132869983	86	24242											
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117618107	117618107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTF2	NM_003594	exon5	c.A901T	p.I301L	CCTAGCATACAGG	.	162	80	157	0	.	91	T	117618107	A	T	117618107	3	4	194	1	0	0	0	0	1	0	0	0	16716	217	8	4	919	4	TTF2	1	117618107	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1237469	117618107	131632514	87	24243											
PHGDH	26227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120284474	120284474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHGDH	NM_006623	exon10	c.T1163C	p.V388A	CGGATGTGAACTT	.	47	18	55	0	.	91	C	120284474	T	C	120284474	3	2	194	1	0	0	0	0	1	0	0	0	11841	1696	59	2	1201	2	PHGDH	1	120284474	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2666367	120284474	128966147	88	24244											
NUDT17	200035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145589344	145589344	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NUDT17	NM_001012758	exon1	c.A84G	p.G28G	TCCGGCTCCCAGG	.	127	36	91	1	.	90	C	145589344	T	C	145589344	2	2	194	1	0	0	0	0	0	0	0	1	10734	1538	54	2		2	NUDT17	1	145589344	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	25304870	145589344	103661277	89	24245											
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145663367	145663367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF115	NM_014455	exon4	c.G428C	p.G143A	TTGAAGGGTGAGT	.	125	43	77	0	.	91	C	145663367	G	C	145663367	3	2	194	1	0	0	0	0	1	0	0	0	13430	1246	43	4	442	4	RNF115	1	145663367	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	74023	145663367	103587254	90	24246											
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	146747893	146747893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHD1L	NM_004284	exon14	c.A1511T	p.Q504L	GAGCCCAGAAACC	.	129	102	76	0	.	231	T	146747893	A	T	146747893	3	4	194	1	0	0	0	0	1	0	0	0	3324	188	7	4	1565	4	CHD1L	1	146747893	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1084526	146747893	102502728	91	24247											
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380840	147380840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJA8	NM_005267	exon2	c.A758T	p.H253L	CCCTCCACTCCAT	.	184	136	91	0	.	138	T	147380840	A	T	147380840	3	4	194	1	0	0	0	0	1	0	0	0	6405	159	6	4	760	4	GJA8	1	147380840	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	632947	147380840	101869781	92	24248											
HIST2H2AC	8338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149858769	149858769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIST2H2AC	NM_003517	exon1	c.G245C	p.R82P	TCCCTCGTCACCT	.	406	125	220	0	.	92	C	149858769	G	C	149858769	3	2	194	1	0	0	0	0	1	0	0	0	7178	1145	40	4	247	4	HIST2H2AC	1	149858769	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2477929	149858769	99391852	93	24249											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150526448	150526448	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTSL4	NM_019032	exon6	c.C981A	p.R327R	GCCCCGCCTGGAG	.	102	27	44	0	.	92	A	150526448	C	A	150526448	2	1	194	1	0	0	0	0	0	0	0	1	277	726	26	3		3	ADAMTSL4	1	150526448	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	667679	150526448	98724173	94	24250											
BNIPL	149428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151018276	151018276	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BNIPL	NM_138278	exon8	c.A855G	p.L285L	CAGGCTACGGAAA	.	153	54	68	0	.	227	G	151018276	A	G	151018276	2	3	194	1	0	0	0	0	0	0	0	1	1480	378	14	2		2	BNIPL	1	151018276	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	491828	151018276	98232345	95	24251											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151403269	151403269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POGZ	NM_015100	exon4	c.A332G	p.Q111R	GGATTCTGGGTCA	.	128	47	61	0	.	93	C	151403269	T	C	151403269	3	2	194	1	0	0	0	0	1	0	0	0	12186	1580	55	2	3978	2	POGZ	1	151403269	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	384993	151403269	97847352	96	24252											
TCHH	7062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152084202	152084202	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCHH	NM_007113	exon3	c.C1491A	p.R497R	CTGCTCGCGCCTC	.	48	11	23	0	.	72	T	152084202	G	T	152084202	2	4	194	1	0	0	0	0	0	0	0	1	15697	1074	38	1		1	TCHH	1	152084202	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	680933	152084202	97166419	97	24253											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286887	152286887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLG	NM_002016	exon3	c.A475G	p.K159E	TTTCTTTTTTTTC	.	111	80	58	0	.	106	C	152286887	T	C	152286887	3	2	194	1	0	0	0	0	1	0	0	0	5922	1850	64	2	11714	2	FLG	1	152286887	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	202685	152286887	96963734	98	24254											
LCE2D	353141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152636872	152636872	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCE2D	NM_178430	exon2	c.T291C	p.S97S	ACCTTCTGGGGCC	.	137	24	73	0	.	68	C	152636872	T	C	152636872	2	2	194	1	0	0	0	0	0	0	0	1	8668	1567	55	2		2	LCE2D	1	152636872	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	349985	152636872	96613749	99	24255											
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152944426	152944426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR4	NM_173080	exon2	c.G60T	p.Q20H	CCAGCAGCAGCAA	.	282	224	148	0	.	68	T	152944426	G	T	152944426	3	4	194	1	0	0	0	0	1	0	0	0	15103	962	34	3	62	3	SPRR4	1	152944426	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	307554	152944426	96306195	100	24256											
SPRR1A	6698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152957864	152957864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR1A	NM_001199828	exon2	c.T158C	p.V53A	CCAAAGTGCCTGA	.	215	163	115	1	.	68	C	152957864	T	C	152957864	3	2	194	1	0	0	0	0	1	0	0	0	15094	1696	59	2	160	2	SPRR1A	1	152957864	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	13438	152957864	96292757	101	24257											
SPRR2F	6705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153085091	153085091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR2F	NM_001014450	exon2	c.A119G	p.K40R	GGACACTTTGATG	.	83	9	52	0	.	68	C	153085091	T	C	153085091	3	2	194	1	0	0	0	0	1	0	0	0	15100	1609	56	2	103	2	SPRR2F	1	153085091	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	127227	153085091	96165530	102	24258											
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153661567	153661567	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPR1	NM_000906	exon16	c.C2556T	p.I852I	CCAGATCCTGCCT	.	168	125	90	0	.	393	T	153661567	C	T	153661567	2	4	194	1	0	0	0	0	0	0	0	1	10594	845	30	3		3	NPR1	1	153661567	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	576476	153661567	95589054	103	24259											
UBAP2L	9898	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	154223688	154223688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBAP2L	NM_001127320	exon13	c.C1385T	p.S462L	CCACATCGGCTCC	.	270	16	143	1	.	91	T	154223688	C	T	154223688	3	4	194	1	0	0	0	0	1	0	0	0	16835	893	31	1	1431	1	UBAP2L	1	154223688	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	562121	154223688	95026933	104	24260											
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	154294415	154294415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AQP10	NM_080429	exon2	c.A112T	p.T38S	CTCCTCACCCAAG	.	271	42	128	0	.	90	T	154294415	A	T	154294415	3	4	194	1	0	0	0	0	1	0	0	0	822	159	6	4	118	4	AQP10	1	154294415	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	70727	154294415	94956206	105	24261											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154573591	154573591	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAR	NM_015840	exon2	c.A1527G	p.L509L	ATATTCTAACAGC	.	204	65	83	0	.	157	C	154573591	T	C	154573591	2	2	194	1	0	0	0	0	0	0	0	1	281	1519	53	2		2	ADAR	1	154573591	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	279176	154573591	94677030	106	24262											
CLK2	1196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155234093	155234093	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLK2	NM_003993	exon12	c.1144-2A>T	.	TGGGTCTGGGAAA	.	345	239	175	1	.	333	A	155234093	T	A	155234093	5	1	194	1	0	0	0	0	0	0	1	0	3537	1594	55	4	366	4	CLK2	1	155234093	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	660502	155234093	94016528	107	24263											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155451023	155451023	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASH1L	NM_018489	exon3	c.A1638G	p.P546P	ACTGAATGGGGAT	.	133	26	54	0	.	234	C	155451023	T	C	155451023	2	2	194	1	0	0	0	0	0	0	0	1	1041	1451	51	2		2	ASH1L	1	155451023	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	216930	155451023	93799598	108	24264											
SYT11	23208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155838371	155838371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT11	NM_152280	exon2	c.A650G	p.K217R	TGCGGAAGACCCT	.	219	72	144	0	.	92	G	155838371	A	G	155838371	3	3	194	1	0	0	0	0	1	0	0	0	15464	72	3	2	656	2	SYT11	1	155838371	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	387348	155838371	93412250	109	24265											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156622305	156622305	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BCAN	NM_198427	exon8	c.A1563T	p.P521P	ATCACCACTTCCT	.	125	23	84	0	.	516	T	156622305	A	T	156622305	2	4	194	1	0	0	0	0	0	0	0	1	1345	146	6	4		4	BCAN	1	156622305	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	783934	156622305	92628316	110	24266											
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157488541	157488541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRL5	NM_031281	exon14	c.A2692T	p.T898S	GATAGGTGGGCTC	.	182	34	96	0	.	156	A	157488541	T	A	157488541	3	1	194	1	0	0	0	0	1	0	0	0	5798	1696	59	4	257	4	FCRL5	1	157488541	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	866236	157488541	91762080	111	24267											
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157514159	157514159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRL5	NM_031281	exon5	c.A737T	p.Q246L	GTAATCTGGAAAT	.	274	198	145	1	.	156	A	157514159	T	A	157514159	3	1	194	1	0	0	0	0	1	0	0	0	5798	1580	55	4	2248	4	FCRL5	1	157514159	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	25618	157514159	91736462	112	24268											
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803106	157803106	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD5L	NM_005894	exon5	c.T915G	p.V305V	GCGGCCAACCCCA	.	250	174	146	0	.	91	C	157803106	A	C	157803106	2	2	194	1	0	0	0	0	0	0	0	1	3027	117	5	5		5	CD5L	1	157803106	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	288947	157803106	91447515	113	24269											
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803162	157803162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD5L	NM_005894	exon5	c.T859A	p.C287S	TCCCACAGCCCAG	.	227	160	144	0	.	91	T	157803162	A	T	157803162	3	4	194	1	0	0	0	0	1	0	0	0	3027	188	7	4	192	4	CD5L	1	157803162	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	56	157803162	91447459	114	24270											
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576643	158576643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10Z1	NM_001004478	exon1	c.A415T	p.T139S	AATCCTACCCTCT	.	169	40	107	0	.	70	T	158576643	A	T	158576643	3	4	194	1	0	0	0	0	1	0	0	0	10923	391	14	4	417	4	OR10Z1	1	158576643	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	773481	158576643	90673978	115	24271											
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576656	158576656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10Z1	NM_001004478	exon1	c.A428T	p.Q143L	GTGCCCAGCTGGT	.	179	138	107	0	.	70	T	158576656	A	T	158576656	3	4	194	1	0	0	0	0	1	0	0	0	10923	188	7	4	430	4	OR10Z1	1	158576656	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	13	158576656	90673965	116	24272											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158627334	158627334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTA1	NM_003126	exon19	c.C2738T	p.T913I	ATCCATGTTTCTG	.	162	41	85	0	.	142	A	158627334	G	A	158627334	3	1	194	1	0	0	0	0	1	0	0	0	15115	1377	48	3	4657	3	SPTA1	1	158627334	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	50678	158627334	90623287	117	24273											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669603	158669603	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6K2	NM_001005279	exon1	c.A840G	p.A280A	CAAAACTGCAAAG	.	408	93	228	0	.	69	C	158669603	T	C	158669603	2	2	194	1	0	0	0	0	0	0	0	1	11202	1567	55	2		2	OR6K2	1	158669603	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	42269	158669603	90581018	118	24274											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669632	158669632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6K2	NM_001005279	exon1	c.T811A	p.W271R	TATCCCAGAACAA	.	415	167	218	0	.	69	T	158669632	A	T	158669632	3	4	194	1	0	0	0	0	1	0	0	0	11202	188	7	4	167	4	OR6K2	1	158669632	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	29	158669632	90580989	119	24275											
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159038418	159038418	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AIM2	NM_004833	exon3	c.A336T	p.A112A	GATGGCTGCAGAT	.	162	108	84	0	.	93	A	159038418	T	A	159038418	2	1	194	1	0	0	0	0	0	0	0	1	432	1567	55	4		4	AIM2	1	159038418	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	368786	159038418	90212203	120	24276											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160097597	160097597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A2	NM_000702	exon8	c.T1004A	p.L335Q	GGCTTCTGGCCAC	.	107	77	56	0	.	518	A	160097597	T	A	160097597	3	1	194	1	0	0	0	0	1	0	0	0	1129	1580	55	4	1034	4	ATP1A2	1	160097597	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1059179	160097597	89153024	121	24277											
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160144010	160144010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A4	NM_144699	exon14	c.C2101A	p.P701T	ACCTCCCCTCAGC	.	329	236	196	0	.	94	A	160144010	C	A	160144010	3	1	194	1	0	0	0	0	1	0	0	0	1131	623	22	3	2155	3	ATP1A4	1	160144010	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	46413	160144010	89106611	122	24278											
SLAMF1	6504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160582368	160582368	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLAMF1	NM_003037	exon6	c.T867C	p.P289P	CTGAAGAGGCTAC	.	101	67	40	0	.	154	G	160582368	A	G	160582368	2	3	194	1	0	0	0	0	0	0	0	1	14367	291	11	2		2	SLAMF1	1	160582368	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	438358	160582368	88668253	123	24279											
LY9	4063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160783584	160783584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LY9	NM_001261457	exon3	c.T613C	p.S205P	GGAGGCTCCATTC	.	413	143	205	1	.	91	C	160783584	T	C	160783584	3	2	194	1	0	0	0	0	1	0	0	0	9101	1551	54	2	755	2	LY9	1	160783584	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	201216	160783584	88467037	124	24280											
LY9	4063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160784286	160784286	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LY9	NM_001261457	exon4	c.T807G	p.L269L	GCCACTTGCACTC	.	190	138	122	0	.	91	G	160784286	T	G	160784286	2	3	194	1	0	0	0	0	0	0	0	1	9101	1799	63	5		5	LY9	1	160784286	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	702	160784286	88466335	125	24281											
PVRL4	81607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161044159	161044159	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PVRL4	NM_030916	exon6	c.C1005A	p.P335P	TTCCTGGGGGTCT	.	182	38	112	0	.	92	T	161044159	G	T	161044159	2	4	194	1	0	0	0	0	0	0	0	1	12842	1219	43	3		3	PVRL4	1	161044159	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	259873	161044159	88206462	126	24282											
FCRLA	84824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161682966	161682966	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRLA	NM_001184866	exon6	c.T945A	p.P315P	TGGGCCTCTGCCT	.	161	118	91	0	.	226	A	161682966	T	A	161682966	2	1	194	1	0	0	0	0	0	0	0	1	5800	1538	54	4		4	FCRLA	1	161682966	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	638807	161682966	87567655	127	24283											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096996	167096996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DUSP27	NM_001080426	exon5	c.A2628T	p.E876D	CAAGGAAGATGAG	.	100	73	60	0	.	71	T	167096996	A	T	167096996	3	4	194	1	0	0	0	0	1	0	0	0	4824	69	3	4	2646	4	DUSP27	1	167096996	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5414030	167096996	82153625	128	24284											
F5	2153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169521814	169521814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	F5	NM_000130	exon8	c.A1277T	p.Q426L	CTGACCTGGGCTC	.	184	138	116	0	.	157	A	169521814	T	A	169521814	3	1	194	1	0	0	0	0	1	0	0	0	5348	1580	55	4	5469	4	F5	1	169521814	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2424818	169521814	79728807	129	24285											
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169586539	169586539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SELP	NM_003005	exon3	c.A208T	p.I70F	TCTGGATGGCCAC	.	210	34	107	0	.	94	A	169586539	T	A	169586539	3	1	194	1	0	0	0	0	1	0	0	0	14019	1464	51	4	2340	4	SELP	1	169586539	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	64725	169586539	79664082	130	24286											
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171174726	171174726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FMO2	NM_001460	exon7	c.T1136C	p.F379S	CCATTTTCCCAAC	.	116	80	76	0	.	91	C	171174726	T	C	171174726	3	2	194	1	0	0	0	0	1	0	0	0	5955	1783	62	2	1158	2	FMO2	1	171174726	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1588187	171174726	78075895	131	24287											
MYOC	4653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	171605647	171605647	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYOC	NM_000261	exon3	c.C933G	p.Y311X	AGAAGGGTAGCCC	.	138	22	71	0	.	226	C	171605647	G	C	171605647	4	2	194	1	0	0	0	0	0	1	0	0	10086	1256	44	4	585	4	MYOC	1	171605647	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	430921	171605647	77644974	132	24288											
METTL13	51603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171759656	171759656	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METTL13	NM_015935	exon5	c.A1374T	p.A458A	CCCTGCAGCCCCG	.	500	336	319	0	.	91	T	171759656	A	T	171759656	2	4	194	1	0	0	0	0	0	0	0	1	9497	175	7	4		4	METTL13	1	171759656	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	154009	171759656	77490965	133	24289											
DNM3	26052	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172007520	172007520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNM3	NM_001136127	exon7	c.T911C	p.L304S	GACAGTTGCTCTC	.	549	125	293	1	.	90	C	172007520	T	C	172007520	3	2	194	1	0	0	0	0	1	0	0	0	4673	1821	63	2	937	2	DNM3	1	172007520	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	247864	172007520	77243101	134	24290											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177001594	177001594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASTN1	NM_004319	exon3	c.C863T	p.P288L	CCACCTGGTGTGA	.	68	23	32	0	.	319	A	177001594	G	A	177001594	3	1	194	1	0	0	0	0	1	0	0	0	1064	1348	47	3	3109	3	ASTN1	1	177001594	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	4994074	177001594	72249027	135	24291											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177226313	177226313	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM5B	NM_021165	exon4	c.A462G	p.G154G	CATAGGAGAAGAG	.	309	234	191	0	.	28	G	177226313	A	G	177226313	2	3	194	1	0	0	0	0	0	0	0	1	5593	318	11	2		2	FAM5B	1	177226313	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	224719	177226313	72024308	136	24292											
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177906378	177906378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC16B	NM_033127	exon19	c.A2474G	p.E825G	ATTTCCTCCCAGA	.	96	65	53	0	.	93	C	177906378	T	C	177906378	3	2	194	1	0	0	0	0	1	0	0	0	13987	1551	54	2	740	2	SEC16B	1	177906378	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	680065	177906378	71344243	137	24293											
STX6	10228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180953835	180953835	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STX6	NM_005819	exon7	c.A669G	p.A223A	TACTTTTGCAAGT	.	114	74	73	0	.	91	C	180953835	T	C	180953835	2	2	194	1	0	0	0	0	0	0	0	1	15348	1799	63	2		2	STX6	1	180953835	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3047457	180953835	68296786	138	24294											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181680158	181680158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1E	NM_001205293	exon8	c.A1124T	p.Q375L	AGCAGCAGATTGA	.	75	29	43	0	.	95	T	181680158	A	T	181680158	3	4	194	1	0	0	0	0	1	0	0	0	2542	188	7	4	1154	4	CACNA1E	1	181680158	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	726323	181680158	67570463	139	24295											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767600	181767600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1E	NM_001205293	exon48	c.A6572T	p.E2191V	GCGAGGAGGGCTC	.	82	22	54	0	.	95	T	181767600	A	T	181767600	3	4	194	1	0	0	0	0	1	0	0	0	2542	304	11	4	6629	4	CACNA1E	1	181767600	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	87442	181767600	67483021	140	24296											
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183102629	183102629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMC1	NM_002293	exon22	c.G3793T	p.V1265L	AAAGCTGTGGAGA	.	165	44	86	0	.	252	T	183102629	G	T	183102629	3	4	194	1	0	0	0	0	1	0	0	0	8614	1377	48	3	3879	3	LAMC1	1	183102629	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1335029	183102629	66147992	141	24297											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185902889	185902889	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMCN1	NM_031935	exon11	c.A1761T	p.G587G	TGCTGGAGAGTAT	.	134	31	72	0	.	113	T	185902889	A	T	185902889	2	4	194	1	0	0	0	0	0	0	0	1	7220	291	11	4		4	HMCN1	1	185902889	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2800260	185902889	63347732	142	24298											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186092186	186092186	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMCN1	NM_031935	exon81	c.A12333G	p.T4111T	CATTACATGGCAT	.	131	44	63	0	.	113	G	186092186	A	G	186092186	2	3	194	1	0	0	0	0	0	0	0	1	7220	204	8	2		2	HMCN1	1	186092186	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	189297	186092186	63158435	143	24299											
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186291450	186291450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon45	c.A6461T	p.H2154L	ACTTACTGAATTG	.	459	98	252	0	.	228	A	186291450	T	A	186291450	3	1	194	1	0	0	0	0	1	0	0	0	16413	1594	55	4	658	4	TPR	1	186291450	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	199264	186291450	62959171	144	24300											
TPR	7175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	186324666	186324666	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon17	c.A2047C	p.K683Q	CTTTTTTGTAGTT	.	202	10	93	0	.	228	G	186324666	T	G	186324666	3	3	194	1	0	0	0	0	1	0	0	0	16413	1821	63	5	5184	5	TPR	1	186324666	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	33216	186324666	62925955	145	24301											
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186327705	186327705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon13	c.G1467C	p.M489I	TATTTCCATTCTT	.	120	79	78	0	.	228	G	186327705	C	G	186327705	3	3	194	1	0	0	0	0	1	0	0	0	16413	594	21	4	5780	4	TPR	1	186327705	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3039	186327705	62922916	146	24302											
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186645249	186645249	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTGS2	NM_000963	exon8	c.A1038G	p.K346K	GTCAAATTTCAGT	.	214	147	129	0	.	227	C	186645249	T	C	186645249	2	2	194	1	0	0	0	0	0	0	0	1	12756	1490	52	2		2	PTGS2	1	186645249	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	317544	186645249	62605372	147	24303											
RGS13	6003	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192627447	192627447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS13	NM_002927	exon6	c.A244T	p.R82W	ATTTCTAGGGCAA	.	264	194	136	1	.	226	T	192627447	A	T	192627447	3	4	194	1	0	0	0	0	1	0	0	0	13296	411	15	4	254	4	RGS13	1	192627447	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5982198	192627447	56623174	148	24304											
UCHL5	51377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192993077	192993077	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UCHL5	NM_015984	exon9	c.630-1G>T	.	CTGTACCTAGAAG	.	132	45	52	0	.	619	A	192993077	C	A	192993077	5	1	194	1	0	0	0	0	0	0	1	0	16919	695	24	3	376	3	UCHL5	1	192993077	Splice_Site	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	365630	192993077	56257544	149	24305											
TROVE2	6738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193045014	193045014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TROVE2	NM_004600	exon3	c.A645G	p.E215E	TAAAGAAAAAGCA	.	330	104	161	0	.	115	G	193045014	A	G	193045014	2	3	194	1	0	0	0	0	0	0	0	1	16573	11	1	2		2	TROVE2	1	193045014	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	51937	193045014	56205607	150	24306											
CFH	3075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196714988	196714988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CFH	NM_000186	exon21	c.3352delG	p.G1118fs	GACAATGGGGACA	.	114	87	240	0	.	566	-	196714988	G	-	196714988	7	5	194	1	0	1	0	1	0	0	0	0	3283	1348	47	0	3452	0	CFH	1	196714988	Frame_Shift_Del	DEL	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3669974	196714988	52535633	151	24307											
NEK7	140609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	198233311	198233311	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEK7	NM_133494	exon5	c.A318G	p.E106E	TAATGAACTAAAC	.	194	158	362	0	.	358	G	198233311	A	G	198233311	2	3	194	1	0	0	0	0	0	0	0	1	10329	40	2	2		2	NEK7	1	198233311	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1518323	198233311	51017310	152	24308											
C1orf106	55765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	200877954	200877954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf106	NM_018265	exon7	c.C968T	p.P323L	CAGGACCTGAGGC	.	157	13	291	0	.	93	T	200877954	C	T	200877954	3	4	194	1	0	0	0	0	1	0	0	0	1980	681	24	3	952	3	C1orf106	1	200877954	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2644643	200877954	48372667	153	24309											
LGR6	59352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202287908	202287908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LGR6	NM_001017403	exon18	c.T2477A	p.L826Q	CACTGCTGTACCT	.	16	15	50	0	.	160	A	202287908	T	A	202287908	3	1	194	1	0	0	0	0	1	0	0	0	8758	1580	55	4	2694	4	LGR6	1	202287908	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1409954	202287908	46962713	154	24310											
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205884091	205884091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A9	NM_134325	exon22	c.T2593C	p.Y865H	GCTTGTACAGCAG	.	40	35	110	0	.	92	G	205884091	A	G	205884091	3	3	194	1	0	0	0	0	1	0	0	0	14524	391	14	2	74	2	SLC26A9	1	205884091	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3596183	205884091	43366530	155	24311											
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205897161	205897161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A9	NM_134325	exon9	c.T970A	p.S324T	CAGGCGACACCGG	.	32	28	58	0	.	92	T	205897161	A	T	205897161	3	4	194	1	0	0	0	0	1	0	0	0	14524	275	10	4	1753	4	SLC26A9	1	205897161	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	13070	205897161	43353460	156	24312											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	207741308	207741308	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CR1	NM_000651	exon25	c.A4092G	p.G1364G	CATTGGAGAGAGC	.	143	108	257	0	.	93	G	207741308	A	G	207741308	2	3	194	1	0	0	0	0	0	0	0	1	3840	291	11	2		2	CR1	1	207741308	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1844147	207741308	41509313	157	24313											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211447593	211447593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RCOR3	NM_001136223	exon4	c.A343G	p.N115D	GGCTACAATGTGG	.	201	158	417	0	.	91	G	211447593	A	G	211447593	3	3	194	1	0	0	0	0	1	0	0	0	13184	130	5	2	357	2	RCOR3	1	211447593	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3706285	211447593	37803028	158	24314											
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213303010	213303010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPS6KC1	NM_012424	exon6	c.G613T	p.G205W	GCACTAGGGGCTG	.	39	27	89	0	.	417	T	213303010	G	T	213303010	3	4	194	1	0	0	0	0	1	0	0	0	13658	1000	35	3	635	3	RPS6KC1	1	213303010	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1855417	213303010	35947611	159	24315											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214818921	214818921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CENPF	NM_016343	exon13	c.A6008T	p.Q2003L	GCATTCAGGTGGC	.	73	60	134	0	.	567	T	214818921	A	T	214818921	3	4	194	1	0	0	0	0	1	0	0	0	3231	188	7	4	6054	4	CENPF	1	214818921	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1515911	214818921	34431700	160	24316											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373134	216373134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USH2A	NM_007123	exon17	c.T3646A	p.Y1216N	AATCGTACTTGGC	.	83	67	147	1	.	115	T	216373134	A	T	216373134	3	4	194	1	0	0	0	0	1	0	0	0	17033	391	14	4	12200	4	USH2A	1	216373134	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1554213	216373134	32877487	161	24317											
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226835068	226835068	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPKB	NM_002221	exon4	c.A2046T	p.A682A	GGCAGCTGCCTTG	.	17	15	44	0	.	230	A	226835068	T	A	226835068	2	1	194	1	0	0	0	0	0	0	0	1	7918	1567	55	4		4	ITPKB	1	226835068	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	10461934	226835068	22415553	162	24318											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229773082	229773082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	URB2	NM_014777	exon4	c.A2722T	p.S908C	CTGGACAGCCTCT	.	33	31	59	0	.	174	T	229773082	A	T	229773082	3	4	194	1	0	0	0	0	1	0	0	0	17022	188	7	4	2732	4	URB2	1	229773082	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2938014	229773082	19477539	163	24319											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232577103	232577103	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIPA1L2	NM_020808	exon12	c.T3576A	p.G1192G	ATAGGAACCCAGG	.	20	20	32	0	.	95	T	232577103	A	T	232577103	2	4	194	1	0	0	0	0	0	0	0	1	14330	30	2	4		4	SIPA1L2	1	232577103	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2804021	232577103	16673518	164	24320											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233353792	233353792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCNXL2	NM_014801	exon11	c.G2643T	p.Q881H	GGAGTACTGGCAG	.	79	69	153	0	.	91	A	233353792	C	A	233353792	3	1	194	1	0	0	0	0	1	0	0	0	11592	564	20	3	3866	3	PCNXL2	1	233353792	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	776689	233353792	15896829	165	24321											
GGPS1	9453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235505654	235505654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GGPS1	NM_001037277	exon4	c.G470A	p.G157E	TGTTTGGATTAGC	.	55	46	114	0	.	90	A	235505654	G	A	235505654	3	1	194	1	0	0	0	0	1	0	0	0	6360	1174	41	3	480	3	GGPS1	1	235505654	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2151862	235505654	13744967	166	24322											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237872815	237872815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR2	NM_001035	exon70	c.A10178T	p.E3393V	AAGCAGAGGAGCT	.	36	25	68	0	.	158	T	237872815	A	T	237872815	3	4	194	1	0	0	0	0	1	0	0	0	13769	304	11	4	10456	4	RYR2	1	237872815	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2367161	237872815	11377806	167	24323											
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	243433405	243433405	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SDCCAG8	NM_006642	exon2	c.68-2A>C	.	TCTTGCAGAACAT	.	30	27	69	0	.	90	C	243433405	A	C	243433405	5	2	194	1	0	0	0	0	0	0	1	0	13959	202	7	5	72	5	SDCCAG8	1	243433405	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5560590	243433405	5817216	168	24324											
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245850542	245850542	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF26B	NM_018012	exon12	c.A4257T	p.T1419T	CCCCACATTAGCC	.	38	30	85	1	.	25	T	245850542	A	T	245850542	2	4	194	1	0	0	0	0	0	0	0	1	8295	204	8	4		4	KIF26B	1	245850542	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2417137	245850542	3400079	169	24325											
ZNF669	79862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247264199	247264199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF669	NM_024804	exon4	c.G872T	p.G291V	CAAGAACCGGAAA	.	27	20	72	0	.	90	A	247264199	C	A	247264199	3	1	194	1	0	0	0	0	1	0	0	0	18073	507	18	3	526	3	ZNF669	1	247264199	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1413657	247264199	1986422	170	24326											
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1667460	1667460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PXDN	NM_012293	exon12	c.A1484T	p.H495L	TGGTCGTGGAGGG	.	51	25	56	0	.	166	A	1667460	T	A	1667460	3	1	194	1	0	0	0	0	1	0	0	0	12847	1696	59	4	3003	4	PXDN	2	1667460	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		1667460	241531913	171	24327											
ADAM17	6868	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9668050	9668050	+	Missense_Mutation	SNP	T	T	G	rs34431503	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM17	NM_003183	exon5	c.A484C	p.K162Q	TTCTTTTGTCTTT	.	75	41	83	0	T|0.996;C|0.004	659	G	9668050	T	G	9668050	3	3	194	1	0	0	0	0	1	0	0	0	238	1821	63	5	2050	5	ADAM17	2	9668050	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	8000590	9668050	233531323	172	24328											
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11375944	11375944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROCK2	NM_004850	exon5	c.G607A	p.D203N	TTGCATCCAGAGC	.	185	95	204	1	.	546	T	11375944	C	T	11375944	3	4	194	1	0	0	0	0	1	0	0	0	13518	855	30	3	3675	3	ROCK2	2	11375944	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1707894	11375944	231823429	173	24329											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15679482	15679482	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBAS	NM_015909	exon8	c.380-2A>T	.	CGGAACTAGAACA	.	104	39	112	0	.	94	A	15679482	T	A	15679482	5	1	194	1	0	0	0	0	0	0	1	0	10186	1536	53	4	6921	4	NBAS	2	15679482	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4303538	15679482	227519891	174	24330											
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17959314	17959314	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEN1	NM_182625	exon12	c.A1248T	p.I416I	TGAAATAGAATGG	.	290	145	276	0	.	359	T	17959314	A	T	17959314	2	4	194	1	0	0	0	0	0	0	0	1	6335	410	15	4		4	GEN1	2	17959314	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2279832	17959314	225240059	175	24331											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231036	21231036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOB	NM_000384	exon26	c.A8704T	p.S2902C	CCTGACTAGAGAA	.	107	49	106	0	.	175	A	21231036	T	A	21231036	3	1	194	1	0	0	0	0	1	0	0	0	785	1522	53	4	5003	4	APOB	2	21231036	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3271722	21231036	221968337	176	24332											
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26699020	26699020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OTOF	NM_194248	exon23	c.C2842T	p.P948S	CGGGTGGGAAGGC	.	49	18	44	0	.	135	A	26699020	G	A	26699020	3	1	194	1	0	0	0	0	1	0	0	0	11303	1232	43	3	3432	3	OTOF	2	26699020	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5467984	26699020	216500353	177	24333											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29296302	29296302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C2orf71	NM_001029883	exon1	c.A826T	p.S276C	GCTTGCTGACTGT	.	53	22	60	0	.	91	A	29296302	T	A	29296302	3	1	194	1	0	0	0	0	1	0	0	0	2191	1580	55	4	3048	4	C2orf71	2	29296302	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2597282	29296302	213903071	178	24334											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	30966296	30966296	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPN13	NM_144575	exon13	c.A1398T	p.S466S	CTCCGCTGATTTT	.	104	44	132	0	.	136	A	30966296	T	A	30966296	2	1	194	1	0	0	0	0	0	0	0	1	2626	1567	55	4		4	CAPN13	2	30966296	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1669994	30966296	212233077	179	24335											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32726807	32726807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC6	NM_016252	exon47	c.A9059C	p.H3020P	CTAAACATGAAAA	.	88	28	94	0	.	233	C	32726807	A	C	32726807	3	2	194	1	0	0	0	0	1	0	0	0	1438	217	8	5	9245	5	BIRC6	2	32726807	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1760511	32726807	210472566	180	24336											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32750644	32750644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC6	NM_016252	exon59	c.A11869C	p.N3957H	GCTGCCAACAAAA	.	112	37	109	0	.	233	C	32750644	A	C	32750644	3	2	194	1	0	0	0	0	1	0	0	0	1438	130	5	5	12103	5	BIRC6	2	32750644	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	23837	32750644	210448729	181	24337											
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32891805	32891805	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC27	NM_017735	exon7	c.A909T	p.P303P	CACTCCAGCACCC	.	54	28	107	0	.	90	T	32891805	A	T	32891805	2	4	194	1	0	0	0	0	0	0	0	1	16692	175	7	4		4	TTC27	2	32891805	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	141161	32891805	210307568	182	24338											
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36982076	36982076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIT	NM_001177969	exon5	c.T288A	p.D96E	GCTTGATAATTCA	.	99	39	97	0	.	92	A	36982076	T	A	36982076	3	1	194	1	0	0	0	0	1	0	0	0	17168	1403	49	4	302	4	VIT	2	36982076	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4090271	36982076	206217297	183	24339											
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37035640	37035640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIT	NM_053276	exon15	c.A1415G	p.Y472C	GCTTCTACTCGCT	.	105	43	157	0	.	92	G	37035640	A	G	37035640	3	3	194	1	0	0	0	0	1	0	0	0	17168	391	14	2	1594	2	VIT	2	37035640	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	53564	37035640	206163733	184	24340											
SIX2	10736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45235999	45235999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIX2	NM_016932	exon1	c.A251T	p.Q84L	AGCTGCTGCAGCT	.	47	17	48	0	.	91	A	45235999	T	A	45235999	3	1	194	1	0	0	0	0	1	0	0	0	14347	1580	55	4	632	4	SIX2	2	45235999	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	8200359	45235999	197963374	185	24341											
MCFD2	90411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47134956	47134956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCFD2	NM_001171506	exon4	c.A302G	p.H101R	TCCTTATGGACAT	.	36	18	46	0	.	90	C	47134956	T	C	47134956	3	2	194	1	0	0	0	0	1	0	0	0	9381	1464	51	2	146	2	MCFD2	2	47134956	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1898957	47134956	196064417	186	24342											
STON1	11037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48808054	48808054	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STON1	NM_001198595	exon3	c.282delC	p.I94fs	TGGCATCCCCAAA	.	111	50	134	0	.	91	-	48808054	C	-	48808054	7	5	194	1	0	1	0	1	0	0	0	0	15315	845	30	0	284	0	STON1	2	48808054	Frame_Shift_Del	DEL	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1673098	48808054	194391319	187	24343											
LHCGR	3973	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	48925836	48925836	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LHCGR	NM_000233	exon9	c.A784T	p.R262X	TTTCTCTTGATGG	.	58	23	65	1	.	589	A	48925836	T	A	48925836	4	1	194	1	0	0	0	0	0	1	0	0	8762	1617	56	4	1327	4	LHCGR	2	48925836	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	117782	48925836	194273537	188	24344											
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	49190265	49190265	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSHR	NM_000145	exon10	c.T1695C	p.S565S	GTCACTAGAGGAG	.	76	36	85	0	.	527	G	49190265	A	G	49190265	2	3	194	1	0	0	0	0	0	0	0	1	6073	407	15	2		2	FSHR	2	49190265	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	264429	49190265	194009108	189	24345											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50463975	50463975	+	Silent	SNP	C	C	A	rs200816799	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NRXN1	NM_001135659	exon19	c.G3618T	p.V1206V	CACTCGCACCAAT	.	139	56	144	0	.	92	A	50463975	C	A	50463975	2	1	194	1	0	0	0	0	0	0	0	1	10665	697	25	3		3	NRXN1	2	50463975	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1273710	50463975	192735398	190	24346											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54874335	54874335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTBN1	NM_003128	exon24	c.C4934A	p.A1645E	ACTATGCAGAGAC	.	58	26	77	0	.	140	A	54874335	C	A	54874335	3	1	194	1	0	0	0	0	1	0	0	0	15118	710	25	3	5137	3	SPTBN1	2	54874335	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	4410360	54874335	188325038	191	24347											
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55479663	55479663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTIF2	NM_002453	exon8	c.G791T	p.G264V	ATCACTCCATCAT	.	171	85	143	0	.	91	A	55479663	C	A	55479663	3	1	194	1	0	0	0	0	1	0	0	0	9934	855	30	3	1428	3	MTIF2	2	55479663	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	605328	55479663	187719710	192	24348											
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55910944	55910944	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PNPT1	NM_033109	exon5	c.A429T	p.P143P	GCCAGCTGGAAAG	.	281	125	335	1	.	90	A	55910944	T	A	55910944	2	1	194	1	0	0	0	0	0	0	0	1	12173	1567	55	4		4	PNPT1	2	55910944	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	431281	55910944	187288429	193	24349											
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69304560	69304560	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANTXR1	NM_032208	exon8	c.T582C	p.S194S	GGACAGTAAGGAT	.	63	26	78	0	.	94	C	69304560	T	C	69304560	2	2	194	1	0	0	0	0	0	0	0	1	711	1635	57	2		2	ANTXR1	2	69304560	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	13393616	69304560	173894813	194	24350											
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71780941	71780941	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYSF	NM_001130982	exon22	c.C2031T	p.C677C	AGGGTGCCACTAC	.	53	21	49	0	.	158	T	71780941	C	T	71780941	2	4	194	1	0	0	0	0	0	0	0	1	4859	747	26	3		3	DYSF	2	71780941	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2476381	71780941	171418432	195	24351											
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	74907007	74907007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA4F	NM_004263	exon14	c.G1984T	p.G662X	GGGGCGGGACTGG	.	57	22	70	0	.	93	T	74907007	G	T	74907007	4	4	194	1	0	0	0	0	0	1	0	0	14035	1233	43	3	2038	3	SEMA4F	2	74907007	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3126066	74907007	168292366	196	24352											
LRRTM1	347730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80529619	80529619	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	LRRTM1,NS,carcinoma,0	LRRTM1	NM_178839	exon2	c.G1326T	p.V442V	CAGGACCACGATG	.	27	10	37	0	.	73	A	80529619	C	A	80529619	2	1	194	1	0	0	0	0	0	0	0	1	9039	581	21	3		3	LRRTM1	2	80529619	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5622612	80529619	162669754	197	24353											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84954900	84954900	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH6	NM_001370	exon61	c.A10080G	p.R3360R	TTCAAGAGGACTT	.	77	35	78	0	.	69	G	84954900	A	G	84954900	2	3	194	1	0	0	0	0	0	0	0	1	4605	301	11	2		2	DNAH6	2	84954900	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4425281	84954900	158244473	198	24354											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85024758	85024758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH6	NM_001370	exon70	c.T11457A	p.H3819Q	AATGCATGAAAAT	.	57	33	65	0	.	69	A	85024758	T	A	85024758	3	1	194	1	0	0	0	0	1	0	0	0	4605	1461	51	4	11731	4	DNAH6	2	85024758	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	69858	85024758	158174615	199	24355											
TRIM43	129868	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	96260836	96260836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM43	NM_138800	exon3	c.G450T	p.K150N	GAAAAAGATTCAA	.	290	112	287	2	.	63	T	96260836	G	T	96260836	3	4	194	1	0	0	0	0	1	0	0	0	16515	933	33	3	456	3	TRIM43	2	96260836	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	11236078	96260836	146938537	200	24356											
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96795631	96795631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASTL	NM_001002036	exon8	c.C806T	p.A269V	TCCGAGGCACTCA	.	117	54	130	0	.	90	A	96795631	G	A	96795631	3	1	194	1	0	0	0	0	1	0	0	0	1063	1203	42	3	496	3	ASTL	2	96795631	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	534795	96795631	146403742	201	24357											
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96966755	96966755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNRNP200	NM_014014	exon5	c.A611G	p.Q204R	TCAAACTGCACAT	.	132	53	119	0	.	162	C	96966755	T	C	96966755	3	2	194	1	0	0	0	0	1	0	0	0	14852	1580	55	2	5963	2	SNRNP200	2	96966755	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	171124	96966755	146232618	202	24358											
FER1L5	90342	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97315365	97315365	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L5	NM_001113382	exon5	c.T345C	p.T115T	GTGTACTGTCACC	.	74	28	76	0	.	23	C	97315365	T	C	97315365	2	2	194	1	0	0	0	0	0	0	0	1	5814	1567	55	2		2	FER1L5	2	97315365	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	348610	97315365	145884008	203	24359											
FAHD2B	151313	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	97757306	97757306	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAHD2B	NM_199336	exon2	c.A138T	p.T46T	ATTCCCTGTCTCC	.	178	75	225	2	.	90	A	97757306	T	A	97757306	2	1	194	1	0	0	0	0	0	0	0	1	5374	1567	55	4		4	FAHD2B	2	97757306	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	441941	97757306	145442067	204	24360											
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98866838	98866838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWA3B	NM_144992	exon20	c.C2731G	p.Q911E	AACCCCCAAGGAG	.	82	40	127	0	.	139	G	98866838	C	G	98866838	3	3	194	1	0	0	0	0	1	0	0	0	17238	595	21	4	2805	4	VWA3B	2	98866838	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1109532	98866838	144332535	205	24361											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98994248	98994248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNGA3	NM_001298	exon3	c.G200T	p.G67V	TCACCGGCCAGGG	.	70	27	80	0	.	96	T	98994248	G	T	98994248	3	4	194	1	0	0	0	0	1	0	0	0	3598	1203	42	3	206	3	CNGA3	2	98994248	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	127410	98994248	144205125	206	24362											
INPP4A	3631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99182502	99182502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INPP4A	NM_001134224	exon22	c.A2305G	p.N769D	GGGTTTAACGTGC	.	64	29	72	0	.	227	G	99182502	A	G	99182502	3	3	194	1	0	0	0	0	1	0	0	0	7752	362	13	2	2383	2	INPP4A	2	99182502	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	188254	99182502	144016871	207	24363											
MRPL30	51263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	99812077	99812077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRPL30	NM_145212	exon6	c.A395G	p.E132G	CAGAGGAGAACAT	.	127	59	142	0	.	91	G	99812077	A	G	99812077	3	3	194	1	0	0	0	0	1	0	0	0	9794	304	11	2	413	2	MRPL30	2	99812077	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	629575	99812077	143387296	208	24364											
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101587535	101587535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPAS2	NM_002518	exon12	c.A1139T	p.K380M	CACTAAAGGTACG	.	91	35	96	0	.	94	T	101587535	A	T	101587535	3	4	194	1	0	0	0	0	1	0	0	0	10563	86	3	4	1181	4	NPAS2	2	101587535	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1775458	101587535	141611838	209	24365											
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101594175	101594175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPAS2	NM_002518	exon15	c.C1396G	p.P466A	CAGGCCCCTCTGC	.	61	15	75	0	.	94	G	101594175	C	G	101594175	3	3	194	1	0	0	0	0	1	0	0	0	10563	623	22	4	1450	4	NPAS2	2	101594175	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	6640	101594175	141605198	210	24366											
EDAR	10913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109527291	109527291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDAR	NM_022336	exon8	c.A671T	p.H224L	CCCGGGTGGCTGG	.	80	42	90	1	.	92	A	109527291	T	A	109527291	3	1	194	1	0	0	0	0	1	0	0	0	4905	1696	59	4	695	4	EDAR	2	109527291	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7933116	109527291	133672082	211	24367											
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110053581	110053581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3RF3	NM_001099289	exon7	c.G1807T	p.A603S	AGCCAAGCCCGGA	.	155	56	189	0	.	24	T	110053581	G	T	110053581	3	4	194	1	0	0	0	0	1	0	0	0	14260	971	34	3	1833	3	SH3RF3	2	110053581	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	526290	110053581	133145792	212	24368											
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110259210	110259210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3RF3	NM_001099289	exon10	c.A2611G	p.T871A	GGCCGCACAGGCC	.	32	12	46	0	.	24	G	110259210	A	G	110259210	3	3	194	1	0	0	0	0	1	0	0	0	14260	159	6	2	2313	2	SH3RF3	2	110259210	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	205629	110259210	132940163	213	24369											
RGPD8	727851	broad.mit.edu;bcgsc.ca	37	2	113145873	113145873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001164463	exon20	c.G4649A	p.S1550N	TCACTACTAAAAA	.	299	91	327	0	.	.	T	113145873	C	T	113145873	3	4	194	1	0	0	0	0	1	0	0	0	13290	565	20	3	664	3	RGPD8	2	113145873	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2886663	113145873	130053500	214	24370											
CKAP2L	150468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113518343	113518343	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CKAP2L	NM_152515	exon4	c.105-2A>T	.	AAGGCCTATAAAA	.	269	114	335	0	.	90	A	113518343	T	A	113518343	5	1	194	1	0	0	0	0	0	0	1	0	3443	1536	53	4	2162	4	CKAP2L	2	113518343	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	372470	113518343	129681030	215	24371											
IL1B	3553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113593196	113593196	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL1B	NM_000576	exon4	c.48-2A>G	.	TGCCACTGTAATA	.	51	23	79	0	.	522	C	113593196	T	C	113593196	5	2	194	1	0	0	0	0	0	0	1	0	7651	1594	55	2	783	2	IL1B	2	113593196	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	74853	113593196	129606177	216	24372											
EN1	2019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	119600649	119600649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EN1	NM_001426	exon2	c.G1044T	p.K348N	CCAGATCTTGATC	.	44	18	53	0	.	154	A	119600649	C	A	119600649	3	1	194	1	0	0	0	0	1	0	0	0	5109	912	32	3	138	3	EN1	2	119600649	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	6007453	119600649	123598724	217	24373											
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125175023	125175023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTNAP5	NM_130773	exon4	c.T385A	p.F129I	CAGACCTTTGCAG	.	65	35	94	0	.	524	A	125175023	T	A	125175023	3	1	194	1	0	0	0	0	1	0	0	0	3650	1609	56	4	399	4	CNTNAP5	2	125175023	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5574374	125175023	118024350	218	24374											
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130918769	130918769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMPD4	NM_017951	exon11	c.A1058G	p.H353R	TAGGCGTGGAGGG	.	137	51	201	1	.	90	C	130918769	T	C	130918769	3	2	194	1	0	0	0	0	1	0	0	0	14807	1696	59	2	1582	2	SMPD4	2	130918769	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5743746	130918769	112280604	219	24375											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130939136	130939136	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMPD4	NM_017751	exon1	c.A39T	p.P13P	CAGAGATGGAAGC	.	63	32	82	0	.	90	A	130939136	T	A	130939136	2	1	194	1	0	0	0	0	0	0	0	1	14807	1451	51	4		4	SMPD4	2	130939136	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	20367	130939136	112260237	220	24376											
ARHGEF4	50649	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	131674130	131674130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF4	.	.	.	.	GCAGGGCCGGCAG	.	31	10	47	1	.	292	A	131674130	C	A	131674130	3	1	194	1	0	0	0	0	1	0	0	0	908	754	26	3		3	ARHGEF4	2	131674130	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	734994	131674130	111525243	221	24377											
FAM168B	130074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131813019	131813019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM168B	NM_001009993	exon5	c.G301A	p.G101S	ACGTGCCTTGCTG	.	111	48	117	0	.	90	T	131813019	C	T	131813019	3	4	194	1	0	0	0	0	1	0	0	0	5486	681	24	3	294	3	FAM168B	2	131813019	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	138889	131813019	111386354	222	24378											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141528495	141528495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP1B	NM_018557	exon34	c.T5581A	p.C1861S	CTGTACACATACA	.	66	18	96	0	.	311	T	141528495	A	T	141528495	3	4	194	1	0	0	0	0	1	0	0	0	8955	159	6	4	8450	4	LRP1B	2	141528495	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	9715476	141528495	101670878	223	24379											
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	149633250	149633250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF5C	NM_004522	exon1	c.G64A	p.E22K	GAAGCGGAGATCC	.	208	98	221	1	.	69	A	149633250	G	A	149633250	3	1	194	1	0	0	0	0	1	0	0	0	8307	1175	41	3	66	3	KIF5C	2	149633250	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	8104755	149633250	93566123	224	24380											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152466569	152466569	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEB	NM_001271208	exon81	c.T12084C	p.D4028D	GGGATCATCTTCA	.	64	26	78	0	.	145	G	152466569	A	G	152466569	2	3	194	1	0	0	0	0	0	0	0	1	10302	214	8	2		2	NEB	2	152466569	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2833319	152466569	90732804	225	24381											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162813739	162813739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC4A10	NM_001178015	exon20	c.A2782T	p.S928C	ATGACCAGTATTC	.	82	29	101	0	.	229	T	162813739	A	T	162813739	3	4	194	1	0	0	0	0	1	0	0	0	14651	188	7	4	2945	4	SLC4A10	2	162813739	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10347170	162813739	80385634	226	24382											
DPP4	1803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162851476	162851476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPP4	NM_001935	exon25	c.G2194T	p.A732S	CCATTGCCTGGAA	.	183	89	203	0	.	93	A	162851476	C	A	162851476	3	1	194	1	0	0	0	0	1	0	0	0	4729	739	26	3	114	3	DPP4	2	162851476	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	37737	162851476	80347897	227	24383											
KCNH7	90134	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163361126	163361126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNH7	NM_033272	exon6	c.T955A	p.S319T	AATCTGATGTGGA	.	112	48	135	1	.	95	T	163361126	A	T	163361126	3	4	194	1	0	0	0	0	1	0	0	0	8037	333	12	4	2745	4	KCNH7	2	163361126	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	509650	163361126	79838247	228	24384											
SCN1A	6323	ucsc.edu;bcgsc.ca	37	2	166901779	166901779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCN1A	NM_001165964	exon10	c.T1436C	p.L479P	TCTGAGAGCCTGC	.	59	6	64	0	.	147	G	166901779	A	G	166901779	3	3	194	1	0	0	0	0	1	0	0	0	13914	304	11	2	4661	2	SCN1A	2	166901779	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3540653	166901779	76297594	229	24385											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167298134	167298134	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCN7A	NM_002976	exon14	c.A1929G	p.A643A	GCCGAATGCAGCA	.	176	80	231	1	.	67	C	167298134	T	C	167298134	2	2	194	1	0	0	0	0	0	0	0	1	13923	1451	51	2		2	SCN7A	2	167298134	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	396355	167298134	75901239	230	24386											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170063518	170063518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP2	NM_004525	exon39	c.G6712A	p.G2238S	CCAAGCCCCGTGG	.	150	65	152	0	.	175	T	170063518	C	T	170063518	3	4	194	1	0	0	0	0	1	0	0	0	8956	623	22	3	7419	3	LRP2	2	170063518	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2765384	170063518	73135855	231	24387											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170097673	170097673	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP2	NM_004525	exon25	c.T3870C	p.C1290C	CCGATCACAGAGC	.	99	48	94	0	.	175	G	170097673	A	G	170097673	2	3	194	1	0	0	0	0	0	0	0	1	8956	157	6	2		2	LRP2	2	170097673	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	34155	170097673	73101700	232	24388											
BBS5	129880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170354147	170354147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BBS5	NM_152384	exon8	c.A629G	p.K210R	CAATAAAGATTAG	.	262	13	304	0	.	90	G	170354147	A	G	170354147	3	3	194	1	0	0	0	0	1	0	0	0	1340	72	3	2	659	2	BBS5	2	170354147	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	256474	170354147	72845226	233	24389											
PHOSPHO2	493911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170557709	170557709	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHOSPHO2	NM_001199286	exon4	c.A228T	p.P76P	CACTCCAGGGATG	.	103	51	118	0	.	91	T	170557709	A	T	170557709	2	4	194	1	0	0	0	0	0	0	0	1	11857	175	7	4		4	PHOSPHO2	2	170557709	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	203562	170557709	72641664	234	24390											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170806488	170806488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBR3	NM_172070	exon23	c.T3458C	p.I1153T	GCATCATTGAAGA	.	134	58	163	0	.	68	C	170806488	T	C	170806488	3	2	194	1	0	0	0	0	1	0	0	0	16900	1493	52	2	3548	2	UBR3	2	170806488	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	248779	170806488	72392885	235	24391											
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171243724	171243724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3B	NM_001083615	exon14	c.T1483C	p.Y495H	GGAAAATATCTGG	.	99	52	102	0	.	530	C	171243724	T	C	171243724	3	2	194	1	0	0	0	0	1	0	0	0	10077	1406	49	2	1537	2	MYO3B	2	171243724	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	437236	171243724	71955649	236	24392											
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171260905	171260905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3B	NM_001083615	exon20	c.T2426A	p.L809Q	AGACCCTGGTTGG	.	100	46	120	0	.	530	A	171260905	T	A	171260905	3	1	194	1	0	0	0	0	1	0	0	0	10077	1580	55	4	2504	4	MYO3B	2	171260905	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	17181	171260905	71938468	237	24393											
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178081594	178081594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HNRNPA3	NM_194247	exon7	c.A746G	p.Y249C	GAGGCTATGGTGG	.	45	20	43	0	.	70	G	178081594	A	G	178081594	3	3	194	1	0	0	0	0	1	0	0	0	7260	449	16	2	772	2	HNRNPA3	2	178081594	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6820689	178081594	65117779	238	24394											
TTC30B	150737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	178415920	178415920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152517	exon1	c.T1572G	p.I524M	CTTTTCAATCTTC	.	218	72	247	1	.	.	C	178415920	A	C	178415920	3	2	194	1	0	0	0	0	1	0	0	0	16696	126	5	5	429	5	TTC30B	2	178415920	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	334326	178415920	64783453	239	24395											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179398439	179398439	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon358	c.T102903A	p.G34301G	ATTGTCACCTGGT	.	64	33	76	0	.	636	T	179398439	A	T	179398439	2	4	194	1	0	0	0	0	0	0	0	1	16732	146	6	4		4	TTN	2	179398439	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	982519	179398439	63800934	240	24396											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179401059	179401059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon357	c.T100415A	p.L33472Q	CCACCTAGATTTT	.	71	45	97	0	.	636	T	179401059	A	T	179401059	3	4	194	1	0	0	0	0	1	0	0	0	16732	420	15	4	7588	4	TTN	2	179401059	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2620	179401059	63798314	241	24397											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179477140	179477140	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon266	c.T50112A	p.T16704T	CTTGACAGTGGTA	.	69	37	84	0	.	636	T	179477140	A	T	179477140	2	4	194	1	0	0	0	0	0	0	0	1	16732	175	7	4		4	TTN	2	179477140	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	76081	179477140	63722233	242	24398											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179482943	179482943	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon252	c.A47242T	p.N15748Y	CAGGATTGTCAGT	.	81	37	87	0	.	636	A	179482943	T	A	179482943	3	1	194	1	0	0	0	0	1	0	0	0	16732	1812	63	4	60895	4	TTN	2	179482943	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5803	179482943	63716430	243	24399											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179584711	179584711	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon81	c.A23658T	p.L7886L	CTAACCTAGTACA	.	65	25	87	0	.	636	A	179584711	T	A	179584711	2	1	194	1	0	0	0	0	0	0	0	1	16732	1536	53	4		4	TTN	2	179584711	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	101768	179584711	63614662	244	24400											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179590678	179590678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon70	c.G20371A	p.E6791K	CCACCTCAAACGG	.	125	56	167	0	.	636	T	179590678	C	T	179590678	3	4	194	1	0	0	0	0	1	0	0	0	16732	835	29	3	84330	3	TTN	2	179590678	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5967	179590678	63608695	245	24401											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179594257	179594257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon64	c.A18626T	p.E6209V	ACTACCTCCACAG	.	69	30	57	0	.	636	A	179594257	T	A	179594257	3	1	194	1	0	0	0	0	1	0	0	0	16732	1551	54	4	86099	4	TTN	2	179594257	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3579	179594257	63605116	246	24402											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179596251	179596251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon59	c.G17242T	p.A5748S	GGAAGGCAGCTGT	.	66	28	77	1	.	636	A	179596251	C	A	179596251	3	1	194	1	0	0	0	0	1	0	0	0	16732	710	25	3	87503	3	TTN	2	179596251	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1994	179596251	63603122	247	24403											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179644181	179644181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon23	c.T3738A	p.H1246Q	AGAAATATGGAAT	.	96	39	133	0	.	636	T	179644181	A	T	179644181	3	4	194	1	0	0	0	0	1	0	0	0	16732	446	16	4	107610	4	TTN	2	179644181	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	47930	179644181	63555192	248	24404											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180311266	180311266	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF385B	NM_152520	exon7	c.A902T	p.E301V	TGTGCCTCTAGCT	.	67	23	81	0	.	23	A	180311266	T	A	180311266	3	1	194	1	0	0	0	0	1	0	0	0	17874	1551	54	4	529	4	ZNF385B	2	180311266	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	667085	180311266	62888107	249	24405											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182339916	182339916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA4	NM_000885	exon4	c.T457G	p.Y153D	ATATTTTACATAA	.	125	55	115	0	.	230	G	182339916	T	G	182339916	3	3	194	1	0	0	0	0	1	0	0	0	7878	1754	61	5	471	5	ITGA4	2	182339916	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2028650	182339916	60859457	250	24406											
CERKL	375298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	182413408	182413408	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CERKL	NM_001030311	exon8	c.A1150T	p.K384X	CTTACTTAAGTTT	.	191	82	226	0	.	228	A	182413408	T	A	182413408	4	1	194	1	0	0	0	0	0	1	0	0	3268	1768	61	4	554	4	CERKL	2	182413408	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	73492	182413408	60785965	251	24407											
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182543118	182543118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEUROD1	NM_002500	exon2	c.T470C	p.L157P	GAGCGCAGGATCT	.	63	29	62	0	.	91	G	182543118	A	G	182543118	3	3	194	1	0	0	0	0	1	0	0	0	10348	188	7	2	604	2	NEUROD1	2	182543118	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	129710	182543118	60656255	252	24408											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186671974	186671974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSIP2	NM_173651	exon17	c.A18208G	p.K6070E	GAATCTAAGGATG	.	98	38	91	0	.	90	G	186671974	A	G	186671974	3	3	194	1	0	0	0	0	1	0	0	0	6075	363	13	2	18274	2	FSIP2	2	186671974	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4128856	186671974	56527399	253	24409											
FAM171B	165215	broad.mit.edu;bcgsc.ca	37	2	187627316	187627316	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM171B	NM_177454	exon8	c.A2247G	p.G749G	GAGTGGAACCACC	.	125	7	145	1	.	141	G	187627316	A	G	187627316	2	3	194	1	0	0	0	0	0	0	0	1	5491	233	9	2		2	FAM171B	2	187627316	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	955342	187627316	55572057	254	24410											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189864285	189864285	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL3A1	NM_000090	exon31	c.T2211A	p.P737P	AAGTCCTGGTCCA	.	48	25	43	0	.	581	A	189864285	T	A	189864285	2	1	194	1	0	0	0	0	0	0	0	1	3688	1567	55	4		4	COL3A1	2	189864285	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2236969	189864285	53335088	255	24411											
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192711467	192711467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SDPR	NM_004657	exon1	c.T185A	p.L62Q	TTGTCCAGGAGCG	.	77	38	90	0	.	92	T	192711467	A	T	192711467	3	4	194	1	0	0	0	0	1	0	0	0	13970	188	7	4	1100	4	SDPR	2	192711467	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2847182	192711467	50487906	256	24412											
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198540055	198540055	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RFTN2	NM_144629	exon1	c.T128A	p.F43Y	AGAGTAAAATCCA	.	71	28	109	0	.	90	T	198540055	A	T	198540055	3	4	194	1	0	0	0	0	1	0	0	0	13259	14	1	4	1413	4	RFTN2	2	198540055	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5828588	198540055	44659318	257	24413											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201469552	201469552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AOX1	NM_001159	exon9	c.A803G	p.N268S	TGGGAAACACCTC	.	71	29	102	0	.	96	G	201469552	A	G	201469552	3	3	194	1	0	0	0	0	1	0	0	0	729	43	2	2	837	2	AOX1	2	201469552	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2929497	201469552	41729821	258	24414											
CDK15	65061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202672587	202672587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDK15	NM_001261435	exon3	c.A280T	p.S94C	AGGAAGAGCCTCC	.	53	27	54	0	.	664	T	202672587	A	T	202672587	3	4	194	1	0	0	0	0	1	0	0	0	3131	304	11	4	133	4	CDK15	2	202672587	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1203035	202672587	40526786	259	24415											
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203834660	203834660	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALS2CR8	NM_024744	exon11	c.A972G	p.V324V	AAAGGTACAGAAG	.	200	108	256	0	.	136	G	203834660	A	G	203834660	2	3	194	1	0	0	0	0	0	0	0	1	555	378	14	2		2	ALS2CR8	2	203834660	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1162073	203834660	39364713	260	24416											
PARD3B	117583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	205989084	205989084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PARD3B	NM_205863	exon9	c.G1199T	p.R400I	TTACCAGAGACTC	.	130	49	140	1	.	140	T	205989084	G	T	205989084	3	4	194	1	0	0	0	0	1	0	0	0	11444	942	33	3	1233	3	PARD3B	2	205989084	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2154424	205989084	37210289	261	24417											
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207346034	207346034	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon3	c.509+2T>C	.	AACAAGTGAGTAT	.	241	112	238	0	.	228	C	207346034	T	C	207346034	5	2	194	1	0	0	0	0	0	0	1	0	245	1710	59	2	521	2	ADAM23	2	207346034	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1356950	207346034	35853339	262	24418											
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207424750	207424750	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon11	c.T1077A	p.I359I	TCAGATTGACATC	.	60	21	87	0	.	228	A	207424750	T	A	207424750	2	1	194	1	0	0	0	0	0	0	0	1	245	1800	63	4		4	ADAM23	2	207424750	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	78716	207424750	35774623	263	24419											
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207436495	207436495	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon17	c.G1611T	p.G537G	CAACGGGGCTCAC	.	50	18	45	0	.	228	T	207436495	G	T	207436495	2	4	194	1	0	0	0	0	0	0	0	1	245	1219	43	3		3	ADAM23	2	207436495	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	11745	207436495	35762878	264	24420											
C2orf80	389073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209047758	209047758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C2orf80	NM_001099334	exon4	c.T137C	p.L46S	ATGGCCAAGTCAT	.	77	33	103	0	.	69	G	209047758	A	G	209047758	3	3	194	1	0	0	0	0	1	0	0	0	2197	131	5	2	468	2	C2orf80	2	209047758	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1611263	209047758	34151615	265	24421											
PTH2R	5746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	209345825	209345825	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTH2R	NM_005048	exon10	c.A1012T	p.R338X	ACGGTTAGAGTTC	.	178	69	181	0	.	502	T	209345825	A	T	209345825	4	4	194	1	0	0	0	0	0	1	0	0	12760	412	15	4	1050	4	PTH2R	2	209345825	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	298067	209345825	33853548	266	24422											
ABCA12	26154	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215813373	215813373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA12	NM_173076	exon47	c.C7051A	p.H2351N	ACAAATGTTCTTC	.	143	68	147	1	.	99	T	215813373	G	T	215813373	3	4	194	1	0	0	0	0	1	0	0	0	30	1377	48	3	764	3	ABCA12	2	215813373	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	6467548	215813373	27386000	267	24423											
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124264	217124264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MARCH4	NM_020814	exon4	c.G1004T	p.R335L	GAGGTCCGGGGGT	.	89	34	114	0	.	69	A	217124264	C	A	217124264	3	1	194	1	0	0	0	0	1	0	0	0	9303	652	23	1	232	1	MARCH4	2	217124264	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1310891	217124264	26075109	268	24424											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218713037	218713037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNS1	NM_022648	exon17	c.G1828T	p.A610S	CATGGGCATAGTG	.	91	32	100	0	.	156	A	218713037	C	A	218713037	3	1	194	1	0	0	0	0	1	0	0	0	16340	710	25	3	3447	3	TNS1	2	218713037	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1588773	218713037	24486336	269	24425											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219609870	219609870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL4	NM_014640	exon6	c.A1700T	p.H567L	CCAATCATGAGAA	.	116	43	152	0	.	93	T	219609870	A	T	219609870	3	4	194	1	0	0	0	0	1	0	0	0	16726	217	8	4	1714	4	TTLL4	2	219609870	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	896833	219609870	23589503	270	24426											
CDK5R2	8941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219825484	219825484	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDK5R2	NM_003936	exon1	c.942delC	p.D314fs	CGCCGACCCCCAC	.	77	32	71	0	.	227	-	219825484	C	-	219825484	7	5	194	1	0	1	0	1	0	0	0	0	3144	506	18	0	944	0	CDK5R2	2	219825484	Frame_Shift_Del	DEL	C	TCGA-UB-A7MB-01A-11D-A33Q-10	215614	219825484	23373889	271	24427											
DES	1674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220285630	220285630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DES	NM_001927	exon5	c.C978A	p.H326Q	CCGACACCAGATC	.	61	26	68	0	.	514	A	220285630	C	A	220285630	3	1	194	1	0	0	0	0	1	0	0	0	4449	506	18	3	996	3	DES	2	220285630	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	460146	220285630	22913743	272	24428											
SPEG	10290	broad.mit.edu;mdanderson.org	37	2	220313082	220313082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEG	NM_005876	exon4	c.T1202A	p.L401Q	GCATCCTGGACAA	.	20	8	25	0	.	383	A	220313082	T	A	220313082	3	1	194	1	0	0	0	0	1	0	0	0	15035	1580	55	4	1216	4	SPEG	2	220313082	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	27452	220313082	22886291	273	24429											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220342465	220342465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEG	NM_005876	exon21	c.G4784T	p.R1595M	GAGGAAGGAGACT	.	75	29	91	0	.	383	T	220342465	G	T	220342465	3	4	194	1	0	0	0	0	1	0	0	0	15035	1000	35	3	4878	3	SPEG	2	220342465	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	29383	220342465	22856908	274	24430											
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220406616	220406616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHPF	NM_024536	exon2	c.A610T	p.T204S	CCTCGGTGTAGGT	.	55	25	77	0	.	90	A	220406616	T	A	220406616	3	1	194	1	0	0	0	0	1	0	0	0	3368	1696	59	4	1729	4	CHPF	2	220406616	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	64151	220406616	22792757	275	24431											
CCDC140	151278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223168828	223168828	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC140	NM_153038	exon2	c.A207T	p.P69P	GGGGCCAAGCCCG	.	231	116	281	0	.	68	T	223168828	A	T	223168828	2	4	194	1	0	0	0	0	0	0	0	1	2774	117	5	4		4	CCDC140	2	223168828	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2762212	223168828	20030545	276	24432											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225635277	225635277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK10	NM_014689	exon54	c.T6290G	p.L2097W	TCCTTCAAAAGCT	.	95	37	106	0	.	92	C	225635277	A	C	225635277	3	2	194	1	0	0	0	0	1	0	0	0	4685	131	5	5	282	5	DOCK10	2	225635277	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2466449	225635277	17564096	277	24433											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227875174	227875174	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL4A4	NM_000092	exon46	c.C4377A	p.G1459G	TCCAGGGCCAAAC	.	135	64	144	0	.	142	T	227875174	G	T	227875174	2	4	194	1	0	0	0	0	0	0	0	1	3693	1190	42	3		3	COL4A4	2	227875174	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2239897	227875174	15324199	278	24434											
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228398301	228398301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGFG1	NM_001135187	exon8	c.A923T	p.H308L	TTGCTCATTTTGA	.	86	39	109	0	.	228	T	228398301	A	T	228398301	3	4	194	1	0	0	0	0	1	0	0	0	380	217	8	4	953	4	AGFG1	2	228398301	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	523127	228398301	14801072	279	24435											
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230911189	230911189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC16A14	NM_152527	exon4	c.C653A	p.P218Q	TCGTTTGGGTTTT	.	107	51	114	0	.	96	T	230911189	G	T	230911189	3	4	194	1	0	0	0	0	1	0	0	0	14407	1348	47	3	887	3	SLC16A14	2	230911189	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2512888	230911189	12288184	280	24436											
CAB39	51719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231655654	231655654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAB39	NM_001130849	exon3	c.A182T	p.E61V	AAAAAGAGCCTCA	.	152	60	178	0	.	226	T	231655654	A	T	231655654	3	4	194	1	0	0	0	0	1	0	0	0	2525	304	11	4	188	4	CAB39	2	231655654	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	744465	231655654	11543719	281	24437											
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231944930	231944930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSMD1	NM_002807	exon12	c.G1315A	p.E439K	TATCAGGAAGGTG	.	86	40	110	0	.	92	A	231944930	G	A	231944930	3	1	194	1	0	0	0	0	1	0	0	0	12692	1175	41	3	1361	3	PSMD1	2	231944930	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	289276	231944930	11254443	282	24438											
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232889007	232889007	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_001257282	exon4	c.A231T	p.P77P	TAATCCAAAGAAG	.	389	164	473	0	.	136	T	232889007	A	T	232889007	2	4	194	1	0	0	0	0	0	0	0	1	4537	117	5	4		4	DIS3L2	2	232889007	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	944077	232889007	10310366	283	24439											
DIS3L2	129563	broad.mit.edu;bcgsc.ca	37	2	232894749	232894749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_001257282	exon5	c.G325T	p.D109Y	AATGGGGATCTGG	.	131	7	143	0	.	136	T	232894749	G	T	232894749	3	4	194	1	0	0	0	0	1	0	0	0	4537	1174	41	3	339	3	DIS3L2	2	232894749	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5742	232894749	10304624	284	24440											
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233001416	233001416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_152383	exon8	c.A937G	p.N313D	GACTGCAATTTTG	.	126	63	113	0	.	136	G	233001416	A	G	233001416	3	3	194	1	0	0	0	0	1	0	0	0	4537	130	5	2	963	2	DIS3L2	2	233001416	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	106667	233001416	10197957	285	24441											
UGT1A10	54575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234545950	234545950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UGT1A10	NM_019075	exon1	c.A782G	p.Y261C	TGGACTATCCCAA	.	82	34	89	0	.	27	G	234545950	A	G	234545950	3	3	194	1	0	0	0	0	1	0	0	0	16942	449	16	2	784	2	UGT1A10	2	234545950	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1544534	234545950	8653423	286	24442											
SPP2	6694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234978570	234978570	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPP2	NM_006944	exon7	c.551-2A>G	.	ATCTTTAGGGATC	.	71	37	72	0	.	90	G	234978570	A	G	234978570	5	3	194	1	0	0	0	0	0	0	1	0	15086	434	15	2	575	2	SPP2	2	234978570	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	432620	234978570	8220803	287	24443											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238275483	238275483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A3	NM_004369	exon11	c.T5347A	p.S1783T	CCTCCGAGTCGAT	.	129	53	199	0	.	526	T	238275483	A	T	238275483	3	4	194	1	0	0	0	0	1	0	0	0	3701	304	11	4	4322	4	COL6A3	2	238275483	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3296913	238275483	4923890	288	24444											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238303641	238303641	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A3	NM_004369	exon3	c.298delC	p.Q100fs	CTTCTTGTTTAGT	.	132	63	159	0	.	526	-	238303641	G	-	238303641	7	5	194	1	0	1	0	1	0	0	0	0	3701	1386	48	0	9450	0	COL6A3	2	238303641	Frame_Shift_Del	DEL	G	TCGA-UB-A7MB-01A-11D-A33Q-10	28158	238303641	4895732	289	24445											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	369957	369957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHL1	NM_001253388	exon3	c.A305T	p.H102L	TATCTCACTTTCA	.	163	85	187	0	.	583	T	369957	A	T	369957	3	4	194	1	0	0	0	0	1	0	0	0	3349	159	6	4	315	4	CHL1	3	369957	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		369957	197652473	290	24446											
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	1425084	1425084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTN6	NM_014461	exon19	c.G2509T	p.G837C	GTGCTGGGCTATG	.	42	24	52	0	.	345	T	1425084	G	T	1425084	3	4	194	1	0	0	0	0	1	0	0	0	3645	1232	43	3	2579	3	CNTN6	3	1425084	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1055127	1425084	196597346	291	24447											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4699946	4699946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPR1	NM_001099952	exon13	c.G1135T	p.D379Y	GGAGGTGACAGCC	.	80	39	100	0	.	710	T	4699946	G	T	4699946	3	4	194	1	0	0	0	0	1	0	0	0	7920	1290	45	3	1177	3	ITPR1	3	4699946	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3274862	4699946	193322484	292	24448											
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9068619	9068619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRGAP3	NM_014850	exon13	c.G1600A	p.G534R	GCTTACCATATAA	.	67	26	87	0	.	344	T	9068619	C	T	9068619	3	4	194	1	0	0	0	0	1	0	0	0	15146	608	21	3	1739	3	SRGAP3	3	9068619	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	4368673	9068619	188953811	293	24449											
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9068641	9068641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRGAP3	NM_014850	exon13	c.C1578G	p.C526W	ACGGATGCAGCTC	.	66	27	92	0	.	344	C	9068641	G	C	9068641	3	2	194	1	0	0	0	0	1	0	0	0	15146	1311	46	4	1761	4	SRGAP3	3	9068641	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	22	9068641	188953789	294	24450											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10370618	10370618	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP2B2	NM_001001331	exon23	c.A3612T	p.S1204S	GAGGGATGACGGC	.	98	46	139	0	.	95	A	10370618	T	A	10370618	2	1	194	1	0	0	0	0	0	0	0	1	1140	1451	51	4		4	ATP2B2	3	10370618	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1301977	10370618	187651812	295	24451											
SYN2	6854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12209886	12209886	+	RNA	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYN2	.	.	.	.	AAACTGTGGGTGG	.	72	31	94	1	.	24	C	12209886	T	C	12209886	1	2	194	0	1	0	0	0	0	0	0	0	15438	1696	59	2		2	SYN2	3	12209886	RNA	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1839268	12209886	185812544	296	24452											
CAND2	23066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12848860	12848860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAND2	NM_001162499	exon3	c.A268C	p.T90P	GTGGACACCCTGT	.	147	66	160	2	.	72	C	12848860	A	C	12848860	3	2	194	1	0	0	0	0	1	0	0	0	2616	159	6	5	278	5	CAND2	3	12848860	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	638974	12848860	185173570	297	24453											
C3orf20	84077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14813588	14813588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3orf20	NM_032137	exon16	c.T2510C	p.V837A	ACTCTGTCCTGAG	.	66	27	63	0	.	94	C	14813588	T	C	14813588	3	2	194	1	0	0	0	0	1	0	0	0	2213	1667	58	2	2564	2	C3orf20	3	14813588	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1964728	14813588	183208842	298	24454											
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19492664	19492664	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNH8	NM_144633	exon10	c.A1593T	p.P531P	CTTTCCAGATGAA	.	52	26	58	0	.	524	T	19492664	A	T	19492664	2	4	194	1	0	0	0	0	0	0	0	1	8038	175	7	4		4	KCNH8	3	19492664	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4679076	19492664	178529766	299	24455											
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	19921298	19921298	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFHB	NM_144715	exon14	c.2329-2A>G	.	GCAATCTAGAAAA	.	47	25	40	0	.	22	C	19921298	T	C	19921298	5	2	194	1	0	0	0	0	0	0	1	0	4945	1536	53	2	178	2	EFHB	3	19921298	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	428634	19921298	178101132	300	24456											
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25833109	25833109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXSM	NM_017897	exon2	c.G598T	p.G200C	CTCAAGGGCCCAA	.	114	55	123	0	.	132	T	25833109	G	T	25833109	3	4	194	1	0	0	0	0	1	0	0	0	11335	1232	43	3	600	3	OXSM	3	25833109	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5911811	25833109	172189321	301	24457											
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30903131	30903131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GADL1	NM_207359	exon2	c.T164C	p.L55P	ATTATTAGCCTAC	.	129	70	117	0	.	90	G	30903131	A	G	30903131	3	3	194	1	0	0	0	0	1	0	0	0	6185	420	15	2	1457	2	GADL1	3	30903131	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5070022	30903131	167119299	302	24458											
CLASP2	23122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33552159	33552159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLASP2	NM_015097	exon37	c.A4235G	p.D1412G	GGGTAGTCTGCAG	.	106	45	126	0	.	93	C	33552159	T	C	33552159	3	2	194	1	0	0	0	0	1	0	0	0	3455	1667	58	2	324	2	CLASP2	3	33552159	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2649028	33552159	164470271	303	24459											
STAC	6769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36534678	36534678	+	Silent	SNP	T	T	C	rs199675015		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAC	NM_003149	exon6	c.T723C	p.N241N	AGCCAATGGGCCA	.	69	36	100	0	T|0.999;C|0.001	94	C	36534678	T	C	36534678	2	2	194	1	0	0	0	0	0	0	0	1	15238	1461	51	2		2	STAC	3	36534678	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2982519	36534678	161487752	304	24460											
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36897302	36897302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRANK1	NM_014831	exon12	c.A3779T	p.E1260V	TTATCCTCCTCAC	.	176	84	181	0	.	24	A	36897302	T	A	36897302	3	1	194	1	0	0	0	0	1	0	0	0	16451	1551	54	4	5046	4	TRANK1	3	36897302	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	362624	36897302	161125128	305	24461											
CCR8	1237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39374403	39374403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR8	NM_005201	exon2	c.G581T	p.W194L	TGAAGTGGAAGAT	.	60	25	63	0	.	659	T	39374403	G	T	39374403	3	4	194	1	0	0	0	0	1	0	0	0	2947	1357	47	3	583	3	CCR8	3	39374403	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2477101	39374403	158648027	306	24462											
TRAK1	22906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42226292	42226292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAK1	NM_001265608	exon4	c.A479G	p.E160G	GGGAGGAGGTAAG	.	147	72	182	1	.	91	G	42226292	A	G	42226292	3	3	194	1	0	0	0	0	1	0	0	0	16446	318	11	2	609	2	TRAK1	3	42226292	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2851889	42226292	155796138	307	24463											
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42775068	42775068	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC13	NM_144719	exon11	c.A1405T	p.S469C	GGCCACTGGACCC	.	31	15	29	0	.	91	A	42775068	T	A	42775068	3	1	194	1	0	0	0	0	1	0	0	0	2765	1580	55	4	766	4	CCDC13	3	42775068	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	548776	42775068	155247362	308	24464											
ZNF662	389114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42956611	42956611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF662	NM_001134656	exon4	c.A1124T	p.Q375L	TTTCTCAGCACCA	.	109	47	106	0	.	90	T	42956611	A	T	42956611	3	4	194	1	0	0	0	0	1	0	0	0	18068	188	7	4	1247	4	ZNF662	3	42956611	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	181543	42956611	155065819	309	24465											
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43389366	43389366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNRK	NM_017719	exon7	c.A1615G	p.S539G	AGCTGCAGTAGTT	.	158	80	176	0	.	815	G	43389366	A	G	43389366	3	3	194	1	0	0	0	0	1	0	0	0	14851	188	7	2	1633	2	SNRK	3	43389366	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	432755	43389366	154633064	310	24466											
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45046818	45046818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EXOSC7	NM_015004	exon6	c.G527C	p.G176A	AAGAGGGGTCGAA	.	114	47	132	0	.	90	C	45046818	G	C	45046818	3	2	194	1	0	0	0	0	1	0	0	0	5319	1232	43	4	549	4	EXOSC7	3	45046818	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1657452	45046818	152975612	311	24467											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46011256	46011256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FYCO1	NM_024513	exon7	c.A541G	p.R181G	GCGTCCTCCTGTG	.	34	17	57	0	.	91	C	46011256	T	C	46011256	3	2	194	1	0	0	0	0	1	0	0	0	6125	1565	54	2	3943	2	FYCO1	3	46011256	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	964438	46011256	152011174	312	24468											
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47651729	47651729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMARCC1	NM_003074	exon26	c.A2870G	p.Q957R	TCCATTTGCTGTC	.	65	31	64	0	.	228	C	47651729	T	C	47651729	3	2	194	1	0	0	0	0	1	0	0	0	14775	1812	63	2	459	2	SMARCC1	3	47651729	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1640473	47651729	150370701	313	24469											
PLXNB1	5364	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48465277	48465277	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLXNB1	NM_001130082	exon3	c.A744G	p.V248V	TCGAGATACATAG	.	115	48	147	1	.	293	C	48465277	T	C	48465277	2	2	194	1	0	0	0	0	0	0	0	1	12123	1393	49	2		2	PLXNB1	3	48465277	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	813548	48465277	149557153	314	24470											
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49924915	49924915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MST1R	NM_002447	exon20	c.A4028T	p.Q1343L	ACTATCTGCTCCA	.	90	38	123	0	.	1406	A	49924915	T	A	49924915	3	1	194	1	0	0	0	0	1	0	0	0	9891	1580	55	4	178	4	MST1R	3	49924915	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1459638	49924915	148097515	315	24471											
HEMK1	51409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50615001	50615001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEMK1	NM_016173	exon6	c.A611T	p.Q204L	ATGCTCAGAGGTA	.	88	41	120	0	.	278	T	50615001	A	T	50615001	3	4	194	1	0	0	0	0	1	0	0	0	7051	188	7	4	629	4	HEMK1	3	50615001	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	690086	50615001	147407429	316	24472											
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52471561	52471561	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3G	NM_020163	exon15	c.G1860T	p.G620G	CTCATCCCCTGGC	.	131	69	149	0	.	70	A	52471561	C	A	52471561	2	1	194	1	0	0	0	0	0	0	0	1	14030	610	22	3		3	SEMA3G	3	52471561	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1856560	52471561	145550869	317	24473											
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52474434	52474434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3G	NM_020163	exon10	c.G1102T	p.G368W	AGGGCCCCCACTG	.	44	17	51	0	.	70	A	52474434	C	A	52474434	3	1	194	1	0	0	0	0	1	0	0	0	14030	623	22	3	1274	3	SEMA3G	3	52474434	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2873	52474434	145547996	318	24474											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52538054	52538054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAB1	NM_015136	exon10	c.A1033T	p.R345W	GTGTGCAGGGAAA	.	52	27	56	0	.	139	T	52538054	A	T	52538054	3	4	194	1	0	0	0	0	1	0	0	0	15236	179	7	4	1071	4	STAB1	3	52538054	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	63620	52538054	145484376	319	24475											
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52860032	52860032	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITIH4	NM_002218	exon7	c.631-2A>T	.	TGAGCCTGGAGGA	.	51	17	73	0	.	46	A	52860032	T	A	52860032	5	1	194	1	0	0	0	0	0	0	1	0	7906	1594	55	4	2239	4	ITIH4	3	52860032	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	321978	52860032	145162398	320	24476											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62631427	62631427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADPS	NM_003716	exon6	c.A1295G	p.Q432R	TCAGTCTGTAGTT	.	86	31	102	0	.	281	C	62631427	T	C	62631427	3	2	194	1	0	0	0	0	1	0	0	0	2570	1580	55	2	2939	2	CADPS	3	62631427	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	9771395	62631427	135391003	321	24477											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64148718	64148718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRICKLE2	NM_198859	exon3	c.C232A	p.H78N	GCTGGTGTAGTAG	.	68	25	68	0	.	95	T	64148718	G	T	64148718	3	4	194	1	0	0	0	0	1	0	0	0	12487	1377	48	3	2326	3	PRICKLE2	3	64148718	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1517291	64148718	133873712	322	24478											
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67054509	67054509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KBTBD8	NM_032505	exon3	c.A1118T	p.K373I	TATCCAAACCATC	.	90	48	104	0	.	587	T	67054509	A	T	67054509	3	4	194	1	0	0	0	0	1	0	0	0	7999	14	1	4	1128	4	KBTBD8	3	67054509	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2905791	67054509	130967921	323	24479											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77595492	77595492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROBO2	NM_002942	exon7	c.C938T	p.P313L	TAGCTCCCCCACA	.	58	22	51	0	.	328	T	77595492	C	T	77595492	3	4	194	1	0	0	0	0	1	0	0	0	13514	623	22	3	966	3	ROBO2	3	77595492	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	10540983	77595492	120426938	324	24480											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85961527	85961527	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADM2	NM_001167675	exon6	c.A534T	p.V178V	AGATGTAAAATAT	.	254	118	224	0	.	228	T	85961527	A	T	85961527	2	4	194	1	0	0	0	0	0	0	0	1	2567	349	13	4		4	CADM2	3	85961527	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8366035	85961527	112060903	325	24481											
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93754239	93754239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARL13B	NM_182896	exon4	c.C445G	p.L149V	CTATCTCTGGAAA	.	156	67	153	0	.	91	G	93754239	C	G	93754239	3	3	194	1	0	0	0	0	1	0	0	0	929	912	32	4	459	4	ARL13B	3	93754239	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7792712	93754239	104268191	326	24482											
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100964730	100964730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IMPG2	NM_016247	exon12	c.C1459T	p.H487Y	CAGAATGAAGAGT	.	125	59	112	0	.	93	A	100964730	G	A	100964730	3	1	194	1	0	0	0	0	1	0	0	0	7729	1290	45	3	2298	3	IMPG2	3	100964730	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	7210491	100964730	97057700	327	24483											
MYH15	22989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108147647	108147647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH15	NM_014981	exon28	c.A3454C	p.T1152P	CTTGGGTGAGGTC	.	107	48	139	1	.	73	G	108147647	T	G	108147647	3	3	194	1	0	0	0	0	1	0	0	0	10034	1696	59	5	2446	5	MYH15	3	108147647	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7182917	108147647	89874783	328	24484											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108149731	108149731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH15	NM_014981	exon27	c.A3320G	p.E1107G	TCATTCTCCACTT	.	44	14	52	0	.	73	C	108149731	T	C	108149731	3	2	194	1	0	0	0	0	1	0	0	0	10034	1551	54	2	2584	2	MYH15	3	108149731	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2084	108149731	89872699	329	24485											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108396342	108396342	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DZIP3	NM_014648	exon26	c.2782-2A>T	.	TCTACCAGACACA	.	207	95	248	1	.	91	T	108396342	A	T	108396342	5	4	194	1	0	0	0	0	0	0	1	0	4865	202	7	4	2878	4	DZIP3	3	108396342	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	246611	108396342	89626088	330	24486											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108396438	108396438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DZIP3	NM_014648	exon26	c.A2876T	p.E959V	GTCCTGAGATACT	.	194	88	291	0	.	91	T	108396438	A	T	108396438	3	4	194	1	0	0	0	0	1	0	0	0	4865	304	11	4	2974	4	DZIP3	3	108396438	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	96	108396438	89625992	331	24487											
TRAT1	50852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108572586	108572586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAT1	NM_016388	exon6	c.T423G	p.H141Q	ACTACATGCAATA	.	328	165	384	0	.	227	G	108572586	T	G	108572586	3	3	194	1	0	0	0	0	1	0	0	0	16463	1461	51	5	445	5	TRAT1	3	108572586	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	176148	108572586	89449844	332	24488											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112357721	112357721	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC80	NM_199511	exon2	c.T1032A	p.P344P	TGAGGGAGGTTGG	.	29	9	45	0	.	92	T	112357721	A	T	112357721	2	4	194	1	0	0	0	0	0	0	0	1	2854	291	11	4		4	CCDC80	3	112357721	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3785135	112357721	85664709	333	24489											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113092276	113092276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR52	NM_001164496	exon18	c.T2426C	p.I809T	GTTTGGATGGGAT	.	90	37	79	0	.	90	G	113092276	A	G	113092276	3	3	194	1	0	0	0	0	1	0	0	0	17301	333	12	2	3225	2	WDR52	3	113092276	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	734555	113092276	84930154	334	24490											
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113524316	113524316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP6V1A	NM_001690	exon14	c.A1705G	p.I569V	TGGTCCATTATTC	.	176	74	182	0	.	93	G	113524316	A	G	113524316	3	3	194	1	0	0	0	0	1	0	0	0	1177	217	8	2	1755	2	ATP6V1A	3	113524316	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	432040	113524316	84498114	335	24491											
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119133814	119133814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP31	NM_020754	exon12	c.T3038A	p.L1013Q	CTGGCCTGAAAGG	.	65	23	65	0	.	92	A	119133814	T	A	119133814	3	1	194	1	0	0	0	0	1	0	0	0	880	1580	55	4	3084	4	ARHGAP31	3	119133814	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5609498	119133814	78888616	336	24492											
GPR156	165829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119886437	119886437	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR156	NM_153002	exon9	c.T1887A	p.P629P	TGCCCCAGGAACA	.	43	24	53	0	.	92	T	119886437	A	T	119886437	2	4	194	1	0	0	0	0	0	0	0	1	6661	175	7	4		4	GPR156	3	119886437	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	752623	119886437	78135993	337	24493											
STXBP5L	9515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120871322	120871322	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STXBP5L	NM_014980	exon8	c.670-2A>G	.	TTTTCCAGCTGCT	.	47	20	72	0	.	77	G	120871322	A	G	120871322	5	3	194	1	0	0	0	0	0	0	1	0	15356	202	7	2	694	2	STXBP5L	3	120871322	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	984885	120871322	77151108	338	24494											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121263593	121263593	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLQ	NM_199420	exon2	c.A324C	p.G108G	ATTCTTTCCTTCC	.	159	67	166	0	.	664	G	121263593	T	G	121263593	2	3	194	1	0	0	0	0	0	0	0	1	12208	1770	62	5		5	POLQ	3	121263593	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	392271	121263593	76758837	339	24495											
CD86	942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121828150	121828150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD86	NM_175862	exon5	c.T742C	p.W248R	ATTCCTTGGATTA	.	93	38	106	0	.	92	C	121828150	T	C	121828150	3	2	194	1	0	0	0	0	1	0	0	0	3043	1812	63	2	760	2	CD86	3	121828150	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	564557	121828150	76194280	340	24496											
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126219694	126219694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UROC1	NM_001165974	exon12	c.A1169G	p.D390G	GTCGTGTCCAATT	.	57	22	72	0	.	91	C	126219694	T	C	126219694	3	2	194	1	0	0	0	0	1	0	0	0	17025	1667	58	2	1081	2	UROC1	3	126219694	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4391544	126219694	71802736	341	24497											
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127379659	127379659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PODXL2	NM_015720	exon3	c.A788C	p.Q263P	CCAGCCAAGAGGC	.	138	60	121	0	.	91	C	127379659	A	C	127379659	3	2	194	1	0	0	0	0	1	0	0	0	12181	130	5	5	798	5	PODXL2	3	127379659	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1159965	127379659	70642771	342	24498											
CNBP	7555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	128890513	128890513	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBP	NM_003418	exon2	c.A88T	p.R30X	GGCTTCTCATTCC	.	293	141	367	1	.	226	A	128890513	T	A	128890513	4	1	194	1	0	0	0	0	0	1	0	0	3592	1559	54	4	467	4	CNBP	3	128890513	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1510854	128890513	69131917	343	24499											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130092493	130092493	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_153264	exon2	c.G12A	p.L4L	GATCTTGCTAATT	.	388	150	456	0	.	.	A	130092493	G	A	130092493	2	1	194	1	0	0	0	0	0	0	0	1	3702	1310	46	3		3	COL6A5	3	130092493	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1201980	130092493	67929937	344	24500											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130281939	130281939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A6	NM_001102608	exon2	c.T92C	p.L31S	TGTTTTTGGTGGA	.	87	46	104	0	.	76	C	130281939	T	C	130281939	3	2	194	1	0	0	0	0	1	0	0	0	3703	1821	63	2	98	2	COL6A6	3	130281939	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	189446	130281939	67740491	345	24501											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130284329	130284329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A6	NM_001102608	exon3	c.C1153A	p.Q385K	GCTGAGCAGTATG	.	101	46	117	0	.	76	A	130284329	C	A	130284329	3	1	194	1	0	0	0	0	1	0	0	0	3703	711	25	3	1163	3	COL6A6	3	130284329	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2390	130284329	67738101	346	24502											
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	130714897	130714897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP2C1	NM_001199181	exon22	c.G2170T	p.E724X	GCAATCGAAGAGG	.	23	10	30	0	.	91	T	130714897	G	T	130714897	4	4	194	1	0	0	0	0	0	1	0	0	1143	1059	37	1	2154	1	ATP2C1	3	130714897	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	430568	130714897	67307533	347	24503											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132153447	132153447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC13	NM_015268	exon2	c.A53G	p.H18R	CAAAACATTCATG	.	26	15	43	0	.	272	G	132153447	A	G	132153447	3	3	194	1	0	0	0	0	1	0	0	0	4632	217	8	2	55	2	DNAJC13	3	132153447	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1438550	132153447	65868983	348	24504											
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132948183	132948183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM108	NM_023943	exon3	c.T28C	p.C10R	CTCTATTGCCAAC	.	44	14	60	0	.	94	C	132948183	T	C	132948183	3	2	194	1	0	0	0	0	1	0	0	0	16021	1812	63	2	30	2	TMEM108	3	132948183	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	794736	132948183	65074247	349	24505											
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133099726	133099726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM108	NM_023943	exon4	c.A1171T	p.R391W	CCCTCCAGGGTCT	.	66	29	69	0	.	94	T	133099726	A	T	133099726	3	4	194	1	0	0	0	0	1	0	0	0	16021	179	7	4	1177	4	TMEM108	3	133099726	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	151543	133099726	64922704	350	24506											
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133169265	133169265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BFSP2	NM_003571	exon4	c.T848C	p.V283A	GAGATGTTGAAAA	.	48	19	56	0	.	90	C	133169265	T	C	133169265	3	2	194	1	0	0	0	0	1	0	0	0	1416	1725	60	2	862	2	BFSP2	3	133169265	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	69539	133169265	64853165	351	24507											
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133372268	133372268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TOPBP1	NM_007027	exon7	c.A843G	p.I281M	CTTGTATATGGAT	.	68	26	78	0	.	540	C	133372268	T	C	133372268	3	2	194	1	0	0	0	0	1	0	0	0	16366	1396	49	2	3813	2	TOPBP1	3	133372268	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	203003	133372268	64650162	352	24508											
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134265095	134265095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP63	NM_001042383	exon8	c.G894T	p.K298N	AGTAAAGGCAACT	.	424	210	403	0	.	493	T	134265095	G	T	134265095	3	4	194	1	0	0	0	0	1	0	0	0	3257	991	35	3	920	3	CEP63	3	134265095	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	892827	134265095	63757335	353	24509											
SPSB4	92369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140785585	140785585	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPSB4	NM_080862	exon2	c.G639T	p.V213V	GGTGGTGAGTGCC	.	77	43	81	0	.	226	T	140785585	G	T	140785585	2	4	194	1	0	0	0	0	0	0	0	1	15114	1277	45	3		3	SPSB4	3	140785585	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	6520490	140785585	57236845	354	24510											
XRN1	54464	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142122605	142122605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRN1	NM_001042604	exon18	c.A2014G	p.K672E	TTTTCTTCAAAAA	.	309	120	309	0	.	93	C	142122605	T	C	142122605	3	2	194	1	0	0	0	0	1	0	0	0	17456	1792	62	2	3206	2	XRN1	3	142122605	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1337020	142122605	55899825	355	24511											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142253962	142253962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATR	NM_001184	exon21	c.A3905T	p.H1302L	AGAGCATGAATAC	.	106	55	99	0	.	1139	A	142253962	T	A	142253962	3	1	194	1	0	0	0	0	1	0	0	0	1204	1464	51	4	4137	4	ATR	3	142253962	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	131357	142253962	55768468	356	24512											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142281191	142281191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATR	NM_001184	exon4	c.G1053T	p.Q351H	GAAATACTGCAGT	.	190	97	224	0	.	1139	A	142281191	C	A	142281191	3	1	194	1	0	0	0	0	1	0	0	0	1204	564	20	3	7057	3	ATR	3	142281191	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	27229	142281191	55741239	357	24513											
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148558665	148558665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CPB1	NM_001871	exon5	c.A377T	p.E126V	AGATAGAGGCTTG	.	83	40	78	0	.	92	T	148558665	A	T	148558665	3	4	194	1	0	0	0	0	1	0	0	0	3796	304	11	4	395	4	CPB1	3	148558665	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6277474	148558665	49463765	358	24514											
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150396254	150396254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM194A	NM_152394	exon10	c.A1199C	p.Q400P	CTTAGTTGAAAAT	.	230	87	222	0	.	93	G	150396254	T	G	150396254	3	3	194	1	0	0	0	0	1	0	0	0	5526	1812	63	5	812	5	FAM194A	3	150396254	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1837589	150396254	47626176	359	24515											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152554322	152554322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	P2RY1	NM_002563	exon1	c.A751T	p.N251Y	CTGGACAACTCTC	.	77	41	88	0	.	500	T	152554322	A	T	152554322	3	4	194	1	0	0	0	0	1	0	0	0	11346	130	5	4	753	4	P2RY1	3	152554322	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2158068	152554322	45468108	360	24516											
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154145340	154145340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR149	NM_001038705	exon2	c.A1139G	p.Q380R	GCGTTCTGCCTGC	.	49	21	52	0	.	96	C	154145340	T	C	154145340	3	2	194	1	0	0	0	0	1	0	0	0	6654	1580	55	2	1068	2	GPR149	3	154145340	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1591018	154145340	43877090	361	24517											
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154145356	154145356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR149	NM_001038705	exon2	c.A1123G	p.I375V	TGATGATGCAGCC	.	56	23	58	0	.	96	C	154145356	T	C	154145356	3	2	194	1	0	0	0	0	1	0	0	0	6654	1464	51	2	1084	2	GPR149	3	154145356	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	16	154145356	43877074	362	24518											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154889935	154889935	+	Silent	SNP	C	C	A	rs201494121	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MME	NM_007287	exon21	c.C2010A	p.G670G	GAATGGCGAAGAA	.	358	166	370	1	.	516	A	154889935	C	A	154889935	2	1	194	1	0	0	0	0	0	0	0	1	9645	755	27	1		1	MME	3	154889935	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	744579	154889935	43132495	363	24519											
LEKR1	389170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156742645	156742645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LEKR1	NM_001004316	exon11	c.A1300G	p.I434V	CTTGATATTGAAA	.	373	132	398	2	.	68	G	156742645	A	G	156742645	3	3	194	1	0	0	0	0	1	0	0	0	8717	449	16	2	1338	2	LEKR1	3	156742645	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1852710	156742645	41279785	364	24520											
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	160156798	160156798	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM59	NM_173084	exon3	c.T174C	p.N58N	TCTGCAATTAGGG	.	120	46	132	0	.	658	G	160156798	A	G	160156798	2	3	194	1	0	0	0	0	0	0	0	1	16529	98	4	2		2	TRIM59	3	160156798	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3414153	160156798	37865632	365	24521											
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164739156	164739156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SI	NM_001041	exon27	c.A3115G	p.K1039E	TCTTCTTTTGGGG	.	91	41	106	0	.	104	C	164739156	T	C	164739156	3	2	194	1	0	0	0	0	1	0	0	0	14297	1850	64	2	2456	2	SI	3	164739156	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4582358	164739156	33283274	366	24522											
LRRIQ4	344657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169539921	169539921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001080460	exon1	c.A212G	p.K71R	GTTTAAAGAACAT	.	112	45	107	0	.	.	G	169539921	A	G	169539921	3	3	194	1	0	0	0	0	1	0	0	0	9031	72	3	2	214	2	LRRIQ4	3	169539921	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4800765	169539921	28482509	367	24523											
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172643281	172643281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA16	NM_031955	exon7	c.T1083A	p.D361E	TTGAAGATCTGAA	.	163	75	201	0	.	94	T	172643281	A	T	172643281	3	4	194	1	0	0	0	0	1	0	0	0	15000	347	12	4	646	4	SPATA16	3	172643281	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3103360	172643281	25379149	368	24524											
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184009911	184009911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ECE2	NM_014693	exon19	c.G2537T	p.S846I	CCCACAGCCCTGC	.	106	26	119	0	.	94	T	184009911	G	T	184009911	3	4	194	1	0	0	0	0	1	0	0	0	4890	971	34	3	3175	3	ECE2	3	184009911	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	11366630	184009911	14012519	369	24525											
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184298263	184298263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPHB3	NM_004443	exon12	c.T2246A	p.L749Q	AGTACCTGTCCGA	.	80	35	105	0	.	1455	A	184298263	T	A	184298263	3	1	194	1	0	0	0	0	1	0	0	0	5176	1580	55	4	2292	4	EPHB3	3	184298263	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	288352	184298263	13724167	370	24526											
RTP4	64108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187088757	187088757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RTP4	NM_022147	exon2	c.A337T	p.R113W	ACCATGAGGATTC	.	103	48	109	0	.	90	T	187088757	A	T	187088757	3	4	194	1	0	0	0	0	1	0	0	0	13736	295	11	4	343	4	RTP4	3	187088757	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2790494	187088757	10933673	371	24527											
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	189691795	189691795	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LEPREL1	NM_001134418	exon11	c.910-2A>T	.	ATTCCCTGGAAGC	.	91	42	120	0	.	155	A	189691795	T	A	189691795	5	1	194	1	0	0	0	0	0	0	1	0	8730	1594	55	4	699	4	LEPREL1	3	189691795	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2603038	189691795	8330635	372	24528											
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190120151	190120151	+	Missense_Mutation	SNP	G	G	T	rs104893732	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLDN16	NM_006580	exon2	c.G350T	p.W117L	GCCTCTGGTGGGA	.	65	20	83	0	.	227	T	190120151	G	T	190120151	3	4	194	1	0	0	0	0	1	0	0	0	3477	1357	47	3	356	3	CLDN16	3	190120151	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	428356	190120151	7902279	373	24529											
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	191078935	191078935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC50	NM_174908	exon4	c.A317G	p.E106G	TTCAGGAGAAGAA	.	384	157	442	0	.	90	G	191078935	A	G	191078935	3	3	194	1	0	0	0	0	1	0	0	0	2820	304	11	2	331	2	CCDC50	3	191078935	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	958784	191078935	6943495	374	24530											
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193128796	193128796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP13A4	NM_032279	exon28	c.T3272C	p.I1091T	TCTGGTATATCAG	.	342	148	382	1	.	92	G	193128796	A	G	193128796	3	3	194	1	0	0	0	0	1	0	0	0	1126	449	16	2	330	2	ATP13A4	3	193128796	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2049861	193128796	4893634	375	24531											
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193232491	193232491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP13A4	NM_032279	exon2	c.C230A	p.T77K	ACCGTTGTCCTCA	.	72	31	77	0	.	92	T	193232491	G	T	193232491	3	4	194	1	0	0	0	0	1	0	0	0	1126	1377	48	3	3476	3	ATP13A4	3	193232491	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	103695	193232491	4789939	376	24532											
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193336697	193336697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OPA1	NM_130837	exon6	c.G650C	p.G217A	ATCGTGGATCTGA	.	59	20	72	0	.	68	C	193336697	G	C	193336697	3	2	194	1	0	0	0	0	1	0	0	0	10871	1174	41	4	672	4	OPA1	3	193336697	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	104206	193336697	4685733	377	24533											
APOD	347	broad.mit.edu;bcgsc.ca	37	3	195306268	195306268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOD	NM_001647	exon2	c.C65A	p.A22E	TGAAATGCTTGTC	.	94	31	95	2	.	516	T	195306268	G	T	195306268	3	4	194	1	0	0	0	0	1	0	0	0	801	1319	46	3	520	3	APOD	3	195306268	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1969571	195306268	2716162	378	24534											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195511219	195511219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC4	NM_018406	exon2	c.C7232T	p.T2411I	TGACCTGTGGATG	.	319	40	339	0	.	90	A	195511219	G	A	195511219	3	1	194	1	0	0	0	0	1	0	0	0	9978	1377	48	3		3	MUC4	3	195511219	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	204951	195511219	2511211	379	24535											
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195594061	195594061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNK2	NM_005781	exon13	c.G2961T	p.Q987H	AGCCCTCTGCACG	.	188	84	209	0	.	957	A	195594061	C	A	195594061	3	1	194	1	0	0	0	0	1	0	0	0	16315	912	32	3	167	3	TNK2	3	195594061	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	82842	195594061	2428369	380	24536											
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196199329	196199329	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF168	NM_152617	exon6	c.A1077G	p.S359S	CACCCCTGATGTG	.	98	45	93	0	.	90	C	196199329	T	C	196199329	2	2	194	1	0	0	0	0	0	0	0	1	13459	1567	55	2		2	RNF168	3	196199329	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	605268	196199329	1823101	381	24537											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	436177	436177	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF721	NM_133474	exon3	c.G2079G	p.K693K	TTTTTCTCCAGTA	.	93	31	119	0	.	47	C	436177	T	C	436177	2	2	194	1	0	0	0	0	0	0	0	1	18119	1538	54	2		2	ZNF721	4	436177	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		436177	190718099	382	24538											
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	656968	656968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE6B	NM_001145291	exon15	c.T1912A	p.S638T	CTGCTCTCGGAGG	.	87	27	129	0	.	90	A	656968	T	A	656968	3	1	194	1	0	0	0	0	1	0	0	0	11646	1551	54	4	1970	4	PDE6B	4	656968	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	220791	656968	190497308	383	24539											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3189596	3189596	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HTT	NM_002111	exon39	c.A5208T	p.P1736P	TTTGCCAGAAGAA	.	18	13	50	0	.	281	T	3189596	A	T	3189596	2	4	194	1	0	0	0	0	0	0	0	1	7457	175	7	4		4	HTT	4	3189596	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2532628	3189596	187964680	384	24540											
HGFAC	3083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3447852	3447852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HGFAC	NM_001528	exon10	c.A1186T	p.R396W	TGCGGCAGGAGGC	.	83	41	127	0	.	514	T	3447852	A	T	3447852	3	4	194	1	0	0	0	0	1	0	0	0	7086	179	7	4	1224	4	HGFAC	4	3447852	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	258256	3447852	187706424	385	24541											
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	4199319	4199319	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OTOP1	NM_177998	exon5	c.T1242A	p.C414X	CTCAGCACAGAGG	.	57	32	68	0	.	92	T	4199319	A	T	4199319	4	4	194	1	0	0	0	0	0	1	0	0	11305	157	6	4	604	4	OTOP1	4	4199319	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	751467	4199319	186954957	386	24542											
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4304686	4304686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZBTB49	NM_145291	exon3	c.A1123G	p.R375G	ACGGAGAGGCCTG	.	138	45	186	0	.	92	G	4304686	A	G	4304686	3	3	194	1	0	0	0	0	1	0	0	0	17547	295	11	2	1129	2	ZBTB49	4	4304686	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	105367	4304686	186849590	387	24543											
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7730109	7730109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SORCS2	NM_020777	exon22	c.A2902G	p.K968E	TTTTCCAAGGAGC	.	47	18	72	0	.	91	G	7730109	A	G	7730109	3	3	194	1	0	0	0	0	1	0	0	0	14931	131	5	2	2988	2	SORCS2	4	7730109	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3425423	7730109	183424167	388	24544											
C1QTNF7	114905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15444181	15444181	+	Missense_Mutation	SNP	C	C	A	rs140339349	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1QTNF7	NM_001135170	exon3	c.C649A	p.L217M	ATCGGACTGGTAC	.	72	21	93	0	C|1.000;A|0.000	90	A	15444181	C	A	15444181	3	1	194	1	0	0	0	0	1	0	0	0	1968	564	20	3	659	3	C1QTNF7	4	15444181	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7714072	15444181	175710095	389	24545											
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15850179	15850179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD38	NM_001775	exon8	c.A857T	p.Q286L	TTCTTCAGTGTGT	.	49	15	63	0	.	92	T	15850179	A	T	15850179	3	4	194	1	0	0	0	0	1	0	0	0	3009	188	7	4	887	4	CD38	4	15850179	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	405998	15850179	175304097	390	24546											
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	16025970	16025970	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PROM1	NM_006017	exon6	c.T642A	p.Y214X	CAATATATATTTG	.	55	33	73	0	.	207	T	16025970	A	T	16025970	4	4	194	1	0	0	0	0	0	1	0	0	12555	456	16	4	2039	4	PROM1	4	16025970	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	175791	16025970	175128306	391	24547											
NCAPG	64151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17814020	17814020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCAPG	NM_022346	exon2	c.A288C	p.L96F	CCTTTTAAATTAT	.	47	20	70	0	.	153	C	17814020	A	C	17814020	3	2	194	1	0	0	0	0	1	0	0	0	10207	359	13	5	294	5	NCAPG	4	17814020	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1788050	17814020	173340256	392	24548											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20591288	20591288	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLIT2	NM_004787	exon30	c.T3110A	p.L1037Q	AGAAGCTGGACTT	.	86	34	96	0	.	521	A	20591288	T	A	20591288	3	1	194	1	0	0	0	0	1	0	0	0	14740	1580	55	4	3228	4	SLIT2	4	20591288	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2777268	20591288	170562988	393	24549											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724512	30724512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH7	NM_032457	exon1	c.T1468C	p.S490P	CACACCTCGACCC	.	45	22	57	0	.	229	C	30724512	T	C	30724512	3	2	194	1	0	0	0	0	1	0	0	0	11516	1551	54	2	1470	2	PCDH7	4	30724512	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	10133224	30724512	160429764	394	24550											
PGM2	55276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37836307	37836307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGM2	NM_018290	exon3	c.A317G	p.D106G	GTTTTGACGCCCG	.	377	182	426	0	.	91	G	37836307	A	G	37836307	3	3	194	1	0	0	0	0	1	0	0	0	11798	275	10	2	327	2	PGM2	4	37836307	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7111795	37836307	153317969	395	24551											
TLR10	81793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38774823	38774823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR10	NM_001017388	exon2	c.G2389C	p.E797Q	GAGACTCTTCATT	.	74	20	76	0	.	522	G	38774823	C	G	38774823	3	3	194	1	0	0	0	0	1	0	0	0	15947	922	32	4	50	4	TLR10	4	38774823	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	938516	38774823	152379453	396	24552											
SHISA3	152573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42403330	42403330	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHISA3	NM_001080505	exon2	c.C579A	p.P193P	ACCGCCCCCGCCA	.	63	32	57	0	.	70	A	42403330	C	A	42403330	2	1	194	1	0	0	0	0	0	0	0	1	14281	610	22	3		3	SHISA3	4	42403330	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3628507	42403330	148750946	397	24553											
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42446619	42446619	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP8A1	NM_006095	exon32	c.A2991G	p.G997G	CTCCAATCCAGCT	.	58	26	95	0	.	92	C	42446619	T	C	42446619	2	2	194	1	0	0	0	0	0	0	0	1	1192	1422	50	2		2	ATP8A1	4	42446619	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	43289	42446619	148707657	398	24554											
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	43022411	43022411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRXCR1	NM_001080476	exon3	c.T668A	p.L223Q	GAGAACTGCAAGA	.	212	87	277	0	.	23	A	43022411	T	A	43022411	3	1	194	1	0	0	0	0	1	0	0	0	6812	1580	55	4	678	4	GRXCR1	4	43022411	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	575792	43022411	148131865	399	24555											
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46066495	46066495	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG1	NM_173536	exon5	c.C588A	p.P196P	ATCCATGGGAAAG	.	328	137	403	0	.	92	T	46066495	G	T	46066495	2	4	194	1	0	0	0	0	0	0	0	1	6171	1335	47	3		3	GABRG1	4	46066495	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3044084	46066495	145087781	400	24556											
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46099287	46099287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG1	NM_173536	exon2	c.G184T	p.G62X	TATCTCCTTCATG	.	126	66	204	1	.	92	A	46099287	C	A	46099287	4	1	194	1	0	0	0	0	0	1	0	0	6171	690	24	3	1245	3	GABRG1	4	46099287	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	32792	46099287	145054989	401	24557											
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52890300	52890300	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGCB	NM_000232	exon6	c.T780G	p.S260S	CATCACAGATCCA	.	84	34	80	0	.	90	C	52890300	A	C	52890300	2	2	194	1	0	0	0	0	0	0	0	1	14200	175	7	5		5	SGCB	4	52890300	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6791013	52890300	138263976	402	24558											
SCFD2	152579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	53786893	53786893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCFD2	NM_152540	exon6	c.A1706T	p.Q569L	CTTGCCTGGTGGG	.	41	12	58	0	.	93	A	53786893	T	A	53786893	3	1	194	1	0	0	0	0	1	0	0	0	13890	1594	55	4	364	4	SCFD2	4	53786893	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	896593	53786893	137367383	403	24559											
SCFD2	152579	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54140025	54140025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCFD2	NM_152540	exon4	c.A1279T	p.N427Y	GAAAGTTGTCCCA	.	90	35	106	1	.	93	A	54140025	T	A	54140025	3	1	194	1	0	0	0	0	1	0	0	0	13890	1812	63	4	799	4	SCFD2	4	54140025	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	353132	54140025	137014251	404	24560											
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55138653	55138653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDGFRA	NM_006206	exon9	c.G1330C	p.D444H	CTTCCTGATATTG	.	53	26	79	0	.	9497	C	55138653	G	C	55138653	3	2	194	1	0	0	0	0	1	0	0	0	11661	1290	45	4	1360	4	PDGFRA	4	55138653	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	998628	55138653	136015623	405	24561											
KDR	3791	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55971025	55971025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDR	NM_002253	exon13	c.T1772G	p.L591R	ATTGGCAGAGGCT	.	95	36	97	1	.	2298	C	55971025	A	C	55971025	3	2	194	1	0	0	0	0	1	0	0	0	8139	188	7	5	2370	5	KDR	4	55971025	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	832372	55971025	135183251	406	24562											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55984967	55984967	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDR	NM_002253	exon3	c.G162A	p.R54R	CTGTCCCCTGAAA	.	115	60	121	0	.	2298	T	55984967	C	T	55984967	2	4	194	1	0	0	0	0	0	0	0	1	8139	637	22	3		3	KDR	4	55984967	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	13942	55984967	135169309	407	24563											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62758609	62758609	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPHN3	NM_015236	exon7	c.A1512T	p.R504R	AGCCCGAGAAATC	.	59	26	99	0	.	508	T	62758609	A	T	62758609	2	4	194	1	0	0	0	0	0	0	0	1	8917	291	11	4		4	LPHN3	4	62758609	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6773642	62758609	128395667	408	24564											
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68506897	68506897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBA6	NM_018227	exon18	c.A1526G	p.Q509R	AGGAACTGTCTAT	.	85	46	96	0	.	90	C	68506897	T	C	68506897	3	2	194	1	0	0	0	0	1	0	0	0	16829	1580	55	2	1696	2	UBA6	4	68506897	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5748288	68506897	122647379	409	24565											
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68789885	68789885	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS11A	NM_001114387	exon7	c.482-1G>T	.	TCATTGCTGAAAA	.	52	16	93	0	.	69	A	68789885	C	A	68789885	5	1	194	1	0	0	0	0	0	0	1	0	16236	811	28	3	795	3	TMPRSS11A	4	68789885	Splice_Site	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	282988	68789885	122364391	410	24566											
CSN3	1448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71113535	71113535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSN3	NM_005212	exon3	c.G55T	p.A19S	CCCCAGGCTGTGG	.	278	85	318	0	.	93	T	71113535	G	T	71113535	3	4	194	1	0	0	0	0	1	0	0	0	3949	1217	42	3	61	3	CSN3	4	71113535	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2323650	71113535	120040741	411	24567											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71629350	71629350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUFY3	NM_001130709	exon3	c.A614T	p.E205V	CCGCAGAGATAAC	.	314	160	400	0	.	90	T	71629350	A	T	71629350	3	4	194	1	0	0	0	0	1	0	0	0	13740	304	11	4	806	4	RUFY3	4	71629350	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	515815	71629350	119524926	412	24568											
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	72994372	72994372	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPFFR2	NM_004885	exon2	c.A370T	p.T124S	AATGACACAAAGC	.	79	36	83	0	.	92	T	72994372	A	T	72994372	3	4	194	1	0	0	0	0	1	0	0	0	10578	159	6	4	382	4	NPFFR2	4	72994372	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1365022	72994372	118159904	413	24569											
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73414452	73414452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS3	NM_014243	exon3	c.A247G	p.N83D	TGATGTTAAAGAA	.	92	42	131	0	.	651	C	73414452	T	C	73414452	3	2	194	1	0	0	0	0	1	0	0	0	267	1754	61	2	3450	2	ADAMTS3	4	73414452	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	420080	73414452	117739824	414	24570											
CXCL1	2919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74735406	74735406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CXCL1	NM_001511	exon2	c.C121A	p.L41M	ACTGAACTGCGCT	.	134	54	153	0	.	204	A	74735406	C	A	74735406	3	1	194	1	0	0	0	0	1	0	0	0	4077	564	20	3	127	3	CXCL1	4	74735406	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1320954	74735406	116418870	415	24571											
C4orf26	152816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	76489571	76489571	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C4orf26	NM_178497	exon2	c.T315G	p.Y105X	ATTTTATTGGCCA	.	206	77	280	0	.	90	G	76489571	T	G	76489571	4	3	194	1	0	0	0	0	0	1	0	0	2257	1500	52	5	321	5	C4orf26	4	76489571	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1754165	76489571	114664705	416	24572											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79229364	79229364	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_001166133	exon15	c.1678+1G>T	.	GTAGCGGTGAGTG	.	76	27	115	0	.	68	T	79229364	G	T	79229364	5	4	194	1	0	0	0	0	0	0	1	0	6042	1275	44	3	1737	3	FRAS1	4	79229364	Splice_Site	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2739793	79229364	111924912	417	24573											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79285157	79285157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_001166133	exon22	c.A2671T	p.S891C	ACCTGCAGCACCA	.	80	33	100	0	.	68	T	79285157	A	T	79285157	3	4	194	1	0	0	0	0	1	0	0	0	6042	188	7	4	2757	4	FRAS1	4	79285157	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	55793	79285157	111869119	418	24574											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79458286	79458286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_025074	exon72	c.T11230A	p.Y3744N	ACAATCTACAATG	.	87	31	119	0	.	68	A	79458286	T	A	79458286	3	1	194	1	0	0	0	0	1	0	0	0	6042	1522	53	4	11591	4	FRAS1	4	79458286	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	173129	79458286	111695990	419	24575											
ANTXR2	118429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80899212	80899212	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANTXR2	NM_001145794	exon15	c.A1296T	p.R432R	TTTGGGTCGAGGT	.	127	45	171	1	.	23	A	80899212	T	A	80899212	2	1	194	1	0	0	0	0	0	0	0	1	712	1654	58	4		4	ANTXR2	4	80899212	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1440926	80899212	110255064	420	24576											
ARHGAP24	83478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86916311	86916311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP24	NM_001025616	exon9	c.A1504T	p.S502C	AACATGAGCTGGC	.	58	21	76	1	.	227	T	86916311	A	T	86916311	3	4	194	1	0	0	0	0	1	0	0	0	873	304	11	4	1650	4	ARHGAP24	4	86916311	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6017099	86916311	104237965	421	24577											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94436432	94436432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRID2	NM_001510	exon13	c.A2063G	p.Y688C	CGGTATATGAGCA	.	80	38	88	0	.	159	G	94436432	A	G	94436432	3	3	194	1	0	0	0	0	1	0	0	0	6772	449	16	2	2113	2	GRID2	4	94436432	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7520121	94436432	96717844	422	24578											
ATOH1	474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94750985	94750985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATOH1	NM_005172	exon1	c.C908A	p.T303K	CCCTGACAGCGAT	.	57	28	38	0	.	90	A	94750985	C	A	94750985	3	1	194	1	0	0	0	0	1	0	0	0	1112	478	17	3	910	3	ATOH1	4	94750985	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	314553	94750985	96403291	423	24579											
NPNT	255743	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106888492	106888492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPNT	NM_001184691	exon12	c.A1583G	p.Q528R	CACTCCAGGTGTT	.	130	64	173	1	.	91	G	106888492	A	G	106888492	3	3	194	1	0	0	0	0	1	0	0	0	10590	188	7	2	1684	2	NPNT	4	106888492	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	12137507	106888492	84265784	424	24580											
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107154797	107154797	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBCK	NM_001163436	exon16	c.A1460T	p.H487L	TTGGCATGAATAG	.	244	117	281	0	.	336	A	107154797	T	A	107154797	3	1	194	1	0	0	0	0	1	0	0	0	15633	1464	51	4	1265	4	TBCK	4	107154797	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	266305	107154797	83999479	425	24581											
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113303587	113303587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALPK1	NM_001102406	exon4	c.A155T	p.Q52L	TGATCCAGGAGGC	.	215	105	243	1	.	337	T	113303587	A	T	113303587	3	4	194	1	0	0	0	0	1	0	0	0	544	188	7	4	161	4	ALPK1	4	113303587	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6148790	113303587	77850689	426	24582											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114278661	114278661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK2	NM_001148	exon38	c.A8887G	p.T2963A	TCTGTTACCATCA	.	87	39	114	0	.	583	G	114278661	A	G	114278661	3	3	194	1	0	0	0	0	1	0	0	0	621	391	14	2	9102	2	ANK2	4	114278661	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	975074	114278661	76875615	427	24583											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115858495	115858495	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST4	NM_022569	exon5	c.C1386T	p.G462G	AATGAAGCCCTTT	.	90	37	93	0	.	94	A	115858495	G	A	115858495	2	1	194	1	0	0	0	0	0	0	0	1	10258	958	34	3		3	NDST4	4	115858495	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1579834	115858495	75295781	428	24584											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115997739	115997739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST4	NM_022569	exon2	c.A454G	p.K152E	AGTATTTTTCTAA	.	104	37	113	0	.	94	C	115997739	T	C	115997739	3	2	194	1	0	0	0	0	1	0	0	0	10258	1850	64	2	2216	2	NDST4	4	115997739	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	139244	115997739	75156537	429	24585											
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119174753	119174753	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST3	NM_004784	exon13	c.T2499A	p.S833S	GGATTCTGATGTA	.	271	103	318	0	.	153	A	119174753	T	A	119174753	2	1	194	1	0	0	0	0	0	0	0	1	10257	1567	55	4		4	NDST3	4	119174753	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3177014	119174753	71979523	430	24586											
SEC24D	9871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119727008	119727008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC24D	NM_014822	exon7	c.A903G	p.I301M	GTCTTGTATCATG	.	44	20	28	0	.	90	C	119727008	T	C	119727008	3	2	194	1	0	0	0	0	1	0	0	0	13997	1628	57	2	2263	2	SEC24D	4	119727008	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	552255	119727008	71427268	431	24587											
SYNPO2	171024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119953093	119953093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNPO2	NM_001128934	exon4	c.A3163T	p.T1055S	ATTCCCACCTCGC	.	112	53	173	1	.	92	T	119953093	A	T	119953093	3	4	194	1	0	0	0	0	1	0	0	0	15454	159	6	4	3177	4	SYNPO2	4	119953093	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	226085	119953093	71201183	432	24588											
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122756329	122756329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BBS7	NM_018190	exon14	c.A1481G	p.H494R	CTTTGATGGAGTG	.	95	29	140	0	.	91	C	122756329	T	C	122756329	3	2	194	1	0	0	0	0	1	0	0	0	1341	1464	51	2	695	2	BBS7	4	122756329	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2803236	122756329	68397947	433	24589											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123113385	123113385	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1109	NM_015312	exon9	c.A903T	p.G301G	TATAGGACTTGTT	.	110	54	95	0	.	80	T	123113385	A	T	123113385	2	4	194	1	0	0	0	0	0	0	0	1	8208	289	10	4		4	KIAA1109	4	123113385	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	357056	123113385	68040891	434	24590											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123336766	123336766	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAD1	NM_139243	exon11	c.T1482A	p.T494T	GATCACTGAAAGG	.	82	36	98	0	.	90	A	123336766	T	A	123336766	2	1	194	1	0	0	0	0	0	0	0	1	231	1567	55	4		4	ADAD1	4	123336766	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	223381	123336766	67817510	435	24591											
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123859404	123859404	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA5	NM_145207	exon8	c.A1458T	p.S486S	TGGTTCAGTAAGT	.	52	17	80	0	.	90	T	123859404	A	T	123859404	2	4	194	1	0	0	0	0	0	0	0	1	15010	202	7	4		4	SPATA5	4	123859404	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	522638	123859404	67294872	436	24592											
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126241950	126241950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon1	c.C4384A	p.Q1462K	ATTCAACAGATGC	.	176	19	231	1	.	108	A	126241950	C	A	126241950	3	1	194	1	0	0	0	0	1	0	0	0	5692	479	17	3	4386	3	FAT4	4	126241950	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2382546	126241950	64912326	437	24593											
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126242079	126242079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon1	c.A4513T	p.I1505L	GTGCCAATAGAAA	.	93	32	138	2	.	108	T	126242079	A	T	126242079	3	4	194	1	0	0	0	0	1	0	0	0	5692	101	4	4	4515	4	FAT4	4	126242079	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	129	126242079	64912197	438	24594											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126328165	126328165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon3	c.T5438C	p.L1813P	CACTGCTAGTTCG	.	80	12	117	0	.	108	C	126328165	T	C	126328165	3	2	194	1	0	0	0	0	1	0	0	0	5692	1522	53	2	5448	2	FAT4	4	126328165	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	86086	126328165	64826111	439	24595	164	2									
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126328166	126328166	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon3	c.A5439T	p.L1813L	ACTGCTAGTTCGT	.	80	12	116	1	.	108	T	126328166	A	T	126328166	2	4	194	1	0	0	0	0	0	0	0	1	5692	407	15	4		4	FAT4	4	126328166	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1	126328166	64826110	440	24596	164	2									
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134084265	134084265	+	Silent	SNP	C	C	A	rs151224823	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH10	NM_032961	exon4	c.C2931A	p.G977G	TCCTGGCATGGAC	.	89	37	92	0	C|0.998;G|0.002	92	A	134084265	C	A	134084265	2	1	194	1	0	0	0	0	0	0	0	1	11507	697	25	3		3	PCDH10	4	134084265	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7756099	134084265	57070011	441	24597											
ELMOD2	255520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141448650	141448650	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELMOD2	NM_153702	exon3	c.171+2T>C	.	ATAAGGTAGGATA	.	272	115	375	0	.	91	C	141448650	T	C	141448650	5	2	194	1	0	0	0	0	0	0	1	0	5069	1652	57	2	179	2	ELMOD2	4	141448650	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7364385	141448650	49705626	442	24598											
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	143007366	143007366	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INPP4B	NM_003866	exon25	c.A2418G	p.L806L	ATTTTCTAGCAAT	.	28	15	26	0	.	228	C	143007366	T	C	143007366	2	2	194	1	0	0	0	0	0	0	0	1	7753	1509	53	2		2	INPP4B	4	143007366	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1558716	143007366	48146910	443	24599											
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	144133531	144133531	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP38	NM_032557	exon8	c.A1558T	p.R520X	ACTCCCAGATCAC	.	73	34	65	0	.	660	T	144133531	A	T	144133531	4	4	194	1	0	0	0	0	0	1	0	0	17066	180	7	4	1588	4	USP38	4	144133531	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1126165	144133531	47020745	444	24600											
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	147860987	147860987	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC29	NM_031956	exon3	c.A61T	p.K21X	GCAGCTTCTGTCT	.	84	44	105	0	.	90	A	147860987	T	A	147860987	4	1	194	1	0	0	0	0	0	1	0	0	16693	1792	62	4	1410	4	TTC29	4	147860987	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3727456	147860987	43293289	445	24601											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153691590	153691590	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TIGD4	NM_145720	exon2	c.T567C	p.Y189Y	CATTCGATAAAGC	.	108	48	160	0	.	91	G	153691590	A	G	153691590	2	3	194	1	0	0	0	0	0	0	0	1	15895	340	12	2		2	TIGD4	4	153691590	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5830603	153691590	37462686	446	24602											
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153897040	153897040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FHDC1	NM_033393	exon11	c.C2597A	p.S866Y	GAGGCTCCCTGAA	.	177	83	243	0	.	136	A	153897040	C	A	153897040	3	1	194	1	0	0	0	0	1	0	0	0	5876	855	30	3	2639	3	FHDC1	4	153897040	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	205450	153897040	37257236	447	24603											
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158262575	158262575	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA2	NM_000826	exon12	c.T2004C	p.Y668Y	TGCTTATGGAACA	.	86	43	82	0	.	515	C	158262575	T	C	158262575	2	2	194	1	0	0	0	0	0	0	0	1	6768	1471	51	2		2	GRIA2	4	158262575	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4365535	158262575	32891701	448	24604											
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159174638	159174638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM144	NM_018342	exon13	c.A997G	p.I333V	TGCATCATCTTGA	.	43	15	55	0	.	90	G	159174638	A	G	159174638	3	3	194	1	0	0	0	0	1	0	0	0	16055	217	8	2	1039	2	TMEM144	4	159174638	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	912063	159174638	31979638	449	24605											
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162954782	162954782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSTL5	NM_020116	exon3	c.T155A	p.V52D	CCTTTGACTCTTG	.	107	50	147	0	.	158	T	162954782	A	T	162954782	3	4	194	1	0	0	0	0	1	0	0	0	6080	275	10	4	2444	4	FSTL5	4	162954782	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3780144	162954782	28199494	450	24606											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169299546	169299546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX60L	NM_001012967	exon33	c.G4444T	p.A1482S	ATTTTGCTGGAAT	.	253	87	331	1	.	69	A	169299546	C	A	169299546	3	1	194	1	0	0	0	0	1	0	0	0	4379	797	28	3	700	3	DDX60L	4	169299546	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	6344764	169299546	21854730	451	24607											
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173730577	173730577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALNTL6	NM_001034845	exon6	c.A619G	p.K207E	CGCACCAAGAAAA	.	85	27	104	0	.	137	G	173730577	A	G	173730577	3	3	194	1	0	0	0	0	1	0	0	0	6225	131	5	2	637	2	GALNTL6	4	173730577	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4431031	173730577	17423699	452	24608											
GLRA3	8001	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175565106	175565106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLRA3	NM_006529	exon10	c.T1226A	p.V409E	GGCATTACCTGGA	.	114	50	144	1	.	93	T	175565106	A	T	175565106	3	4	194	1	0	0	0	0	1	0	0	0	6456	391	14	4	172	4	GLRA3	4	175565106	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1834529	175565106	15589170	453	24609											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175897487	175897487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.A811C	p.K271Q	TATTGCAAGTGGA	.	117	50	152	0	.	729	C	175897487	A	C	175897487	3	2	194	1	0	0	0	0	1	0	0	0	247	131	5	5	813	5	ADAM29	4	175897487	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	332381	175897487	15256789	454	24610											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175897603	175897603	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.A927T	p.P309P	TACACCACACCGT	.	155	56	243	0	.	729	T	175897603	A	T	175897603	2	4	194	1	0	0	0	0	0	0	0	1	247	146	6	4		4	ADAM29	4	175897603	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	116	175897603	15256673	455	24611											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175899050	175899050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.C2374A	p.P792T	TTGACGCCTTCCC	.	108	28	174	0	.	729	A	175899050	C	A	175899050	3	1	194	1	0	0	0	0	1	0	0	0	247	739	26	3	2376	3	ADAM29	4	175899050	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1447	175899050	15255226	456	24612											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177098697	177098697	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR17	NM_170710	exon30	c.A3741G	p.L1247L	GAGACTAAAAGAA	.	96	50	120	0	.	95	G	177098697	A	G	177098697	2	3	194	1	0	0	0	0	0	0	0	1	17274	349	13	2		2	WDR17	4	177098697	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1199647	177098697	14055579	457	24613											
VEGFC	7424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177608644	177608644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VEGFC	NM_005429	exon6	c.G842A	p.G281E	TTTGGTCCACAGA	.	45	17	39	0	.	710	T	177608644	C	T	177608644	3	4	194	1	0	0	0	0	1	0	0	0	17149	855	30	3	428	3	VEGFC	4	177608644	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	509947	177608644	13545632	458	24614											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187538294	187538294	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT1	NM_005245	exon11	c.G8940A	p.V2980V	TTTCTTCACATAT	.	47	36	126	0	.	34	T	187538294	C	T	187538294	2	4	194	1	0	0	0	0	0	0	0	1	5689	813	29	3		3	FAT1	4	187538294	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	9929650	187538294	3615982	459	24615											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187539226	187539226	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT1	NM_005245	exon10	c.A8514T	p.S2838S	GGTTCCTGAGTCA	.	48	29	83	0	.	34	A	187539226	T	A	187539226	2	1	194	1	0	0	0	0	0	0	0	1	5689	1567	55	4		4	FAT1	4	187539226	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	932	187539226	3615050	460	24616											
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	163383	163383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHG4B	NM_052909	exon11	c.A2128T	p.T710S	ACCCAGACCCTGG	.	41	32	99	0	.	228	T	163383	A	T	163383	3	4	194	1	0	0	0	0	1	0	0	0	12072	275	10	4	2170	4	PLEKHG4B	5	163383	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		163383	180751877	461	24617											
BRD9	65980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	878542	878542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRD9	NM_023924	exon11	c.A1199T	p.D400V	TTCAAGTCGCCAA	.	59	13	72	0	.	90	A	878542	T	A	878542	3	1	194	1	0	0	0	0	1	0	0	0	1507	1667	58	4	618	4	BRD9	5	878542	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	715159	878542	180036718	462	24618											
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	901481	901481	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIP13	NM_004237	exon5	c.T470G	p.L157X	CAACTTTACTGTT	.	77	33	129	0	.	90	G	901481	T	G	901481	4	3	194	1	0	0	0	0	0	1	0	0	16554	1764	61	5	488	5	TRIP13	5	901481	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	22939	901481	180013779	463	24619											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1053467	1053467	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A7	NM_006598	exon23	c.A3157T	p.N1053Y	TACAGTTCTCGTC	.	58	25	78	0	.	138	A	1053467	T	A	1053467	3	1	194	1	0	0	0	0	1	0	0	0	14388	1783	62	4	102	4	SLC12A7	5	1053467	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	151986	1053467	179861793	464	24620											
TERT	7015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1254534	1254534	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TERT	NM_198253	exon15	c.C3244T	p.L1082L	GAGTCAGCTTGAG	.	56	25	78	0	.	1272	A	1254534	G	A	1254534	2	1	194	1	0	0	0	0	0	0	0	1	15761	962	34	3		3	TERT	5	1254534	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	201067	1254534	179660726	465	24621											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1414820	1414820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC6A3	NM_001044	exon8	c.A1142G	p.D381G	GCCACGTCCCCGA	.	40	18	56	0	.	157	C	1414820	T	C	1414820	3	2	194	1	0	0	0	0	1	0	0	0	14685	1667	58	2	752	2	SLC6A3	5	1414820	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	160286	1414820	179500440	466	24622											
IRX4	50805	broad.mit.edu;mdanderson.org	37	5	1878691	1878691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IRX4	NM_016358	exon5	c.G952T	p.E318X	GGTCCTCGTCCAG	.	15	8	12	0	.	226	A	1878691	C	A	1878691	4	1	194	1	0	0	0	0	0	1	0	0	7846	893	31	1	611	1	IRX4	5	1878691	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	463871	1878691	179036569	467	24623											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7817092	7817092	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY2	NM_020546	exon23	c.G2997C	p.V999V	GCGAGTGGGTACG	.	104	42	169	0	.	97	C	7817092	G	C	7817092	2	2	194	1	0	0	0	0	0	0	0	1	294	1362	47	4		4	ADCY2	5	7817092	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5938401	7817092	173098168	468	24624											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7878172	7878172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTRR	NM_024010	exon5	c.G598T	p.A200S	TCACCTGCATCCT	.	38	20	71	0	.	91	T	7878172	G	T	7878172	3	4	194	1	0	0	0	0	1	0	0	0	9961	1319	46	3	616	3	MTRR	5	7878172	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	61080	7878172	173037088	469	24625											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11098804	11098804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTNND2	NM_001332	exon15	c.G2520T	p.M840I	CCACAGCATCTGG	.	63	28	71	0	.	293	A	11098804	C	A	11098804	3	1	194	1	0	0	0	0	1	0	0	0	4020	710	25	3	1189	3	CTNND2	5	11098804	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3220632	11098804	169816456	470	24626											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11117662	11117662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTNND2	NM_001332	exon13	c.G2177T	p.G726V	TCCTCTCCGGCCG	.	78	29	122	0	.	293	A	11117662	C	A	11117662	3	1	194	1	0	0	0	0	1	0	0	0	4020	855	30	3	1540	3	CTNND2	5	11117662	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	18858	11117662	169797598	471	24627											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16711259	16711259	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO10	NM_012334	exon20	c.C2025A	p.V675V	TCTTCGGACCGCA	.	104	60	180	0	.	3	T	16711259	G	T	16711259	2	4	194	1	0	0	0	0	0	0	0	1	10062	1161	41	3		3	MYO10	5	16711259	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5593597	16711259	164204001	472	24628											
CDH6	1004	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31313451	31313451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH6	NM_004932	exon8	c.T1280C	p.M427T	CAGATATGGACAG	.	123	43	152	1	.	159	C	31313451	T	C	31313451	3	2	194	1	0	0	0	0	1	0	0	0	3114	1464	51	2	1306	2	CDH6	5	31313451	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	14602192	31313451	149601809	473	24629											
TTC23L	153657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34880306	34880306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC23L	NM_144725	exon9	c.A970G	p.I324V	TATTTCATAAGAA	.	198	94	186	0	.	22	G	34880306	A	G	34880306	3	3	194	1	0	0	0	0	1	0	0	0	16688	217	8	2	1000	2	TTC23L	5	34880306	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3566855	34880306	146034954	474	24630											
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35709050	35709050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEF2	NM_024867	exon19	c.T2666A	p.V889D	TTGAAGTTGAGAA	.	218	81	243	0	.	26	A	35709050	T	A	35709050	3	1	194	1	0	0	0	0	1	0	0	0	15034	1739	60	4	2761	4	SPEF2	5	35709050	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	828744	35709050	145206210	475	24631											
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41143008	41143008	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6	NM_001115131	exon18	c.A2724T	p.T908T	GTTCAATGTTTTC	.	82	34	89	0	.	95	A	41143008	T	A	41143008	2	1	194	1	0	0	0	0	0	0	0	1	2315	1451	51	4		4	C6	5	41143008	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5433958	41143008	139772252	476	24632											
ITGA2	3673	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52369005	52369005	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA2	NM_002203	exon20	c.G2487A	p.L829L	AACGCTGAAAAAT	.	79	31	80	2	.	226	A	52369005	G	A	52369005	2	1	194	1	0	0	0	0	0	0	0	1	7875	1277	45	3		3	ITGA2	5	52369005	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	11225997	52369005	128546255	477	24633											
ESM1	11082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54281099	54281099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ESM1	NM_001135604	exon1	c.T247G	p.C83G	GCTGACACCTCAG	.	91	52	124	1	.	90	C	54281099	A	C	54281099	3	2	194	1	0	0	0	0	1	0	0	0	5252	159	6	5	319	5	ESM1	5	54281099	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1912094	54281099	126634161	478	24634											
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54763943	54763943	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPAP2A	NM_176895	exon3	c.A248T	p.N83I	AAAAGGTTACAGT	.	57	22	74	0	.	92	A	54763943	T	A	54763943	3	1	194	1	0	0	0	0	1	0	0	0	12290	1725	60	4	625	4	PPAP2A	5	54763943	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	482844	54763943	126151317	479	24635											
PLK2	10769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	57750786	57750786	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLK2	NM_006622	exon13	c.A1818T	p.L606L	AGATTTTAGCCAC	.	123	54	157	0	.	409	A	57750786	T	A	57750786	2	1	194	1	0	0	0	0	0	0	0	1	12096	1741	61	4		4	PLK2	5	57750786	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2986843	57750786	123164474	480	24636											
IPO11	51194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61811284	61811284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IPO11	NM_001134779	exon20	c.A1972G	p.M658V	CACAATATGTTGA	.	77	36	95	1	.	227	G	61811284	A	G	61811284	3	3	194	1	0	0	0	0	1	0	0	0	7793	449	16	2	2050	2	IPO11	5	61811284	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4060498	61811284	119103976	481	24637											
SLC30A5	64924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68423913	68423913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC30A5	NM_022902	exon15	c.A2081G	p.H694R	CAATTCATATACA	.	66	27	73	0	.	226	G	68423913	A	G	68423913	3	3	194	1	0	0	0	0	1	0	0	0	14558	217	8	2	2227	2	SLC30A5	5	68423913	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6612629	68423913	112491347	482	24638											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	71494454	71494454	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP1B	NM_005909	exon5	c.G5272C	p.D1758H	CCCAGAGATATGT	.	49	18	63	0	.	155	C	71494454	G	C	71494454	3	2	194	1	0	0	0	0	1	0	0	0	9228	942	33	4	5290	4	MAP1B	5	71494454	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3070541	71494454	109420806	483	24639											
RASGRF2	5924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80363997	80363997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASGRF2	NM_006909	exon3	c.A542T	p.E181V	AATCAGAGGTATT	.	61	42	79	0	.	725	T	80363997	A	T	80363997	3	4	194	1	0	0	0	0	1	0	0	0	13073	318	11	4	552	4	RASGRF2	5	80363997	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8869543	80363997	100551263	484	24640											
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82491711	82491711	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRCC4	NM_003401	exon4	c.A438T	p.K146N	GCAGAAAGAAAAT	.	45	29	50	0	.	229	T	82491711	A	T	82491711	3	4	194	1	0	0	0	0	1	0	0	0	17452	69	3	4	448	4	XRCC4	5	82491711	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2127714	82491711	98423549	485	24641											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90055290	90055290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon58	c.A12005G	p.N4002S	CGTTCAATATTTC	.	72	24	107	0	.	103	G	90055290	A	G	90055290	3	3	194	1	0	0	0	0	1	0	0	0	6721	101	4	2	12235	2	GPR98	5	90055290	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7563579	90055290	90859970	486	24642											
GPR98	84059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90059134	90059134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon59	c.G12133A	p.E4045K	ATTGATGAATCCC	.	28	11	54	0	.	103	A	90059134	G	A	90059134	3	1	194	1	0	0	0	0	1	0	0	0	6721	1291	45	3	12367	3	GPR98	5	90059134	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3844	90059134	90856126	487	24643											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90077396	90077396	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon65	c.13231+1G>T	.	TCGAAGGTAGGTT	.	182	60	262	0	.	103	T	90077396	G	T	90077396	5	4	194	1	0	0	0	0	0	0	1	0	6721	1275	44	3	13490	3	GPR98	5	90077396	Splice_Site	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	18262	90077396	90837864	488	24644											
WDR36	134430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	110430616	110430616	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR36	NM_139281	exon2	c.331-2A>T	.	TTAAACAGGTTCA	.	50	28	77	0	.	92	T	110430616	A	T	110430616	5	4	194	1	0	0	0	0	0	0	1	0	17287	202	7	4	335	4	WDR36	5	110430616	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	20353220	110430616	70484644	489	24645											
PRR16	51334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120022245	120022245	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRR16	NM_016644	exon3	c.T687C	p.P229P	CCTCCCTCCTACA	.	104	31	147	1	.	71	C	120022245	T	C	120022245	2	2	194	1	0	0	0	0	0	0	0	1	12589	1538	54	2		2	PRR16	5	120022245	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	9591629	120022245	60893015	490	24646											
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121780395	121780395	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNCAIP	NM_005460	exon8	c.T1560C	p.S520S	GGCCTCTCAAGTG	.	80	29	113	0	.	92	C	121780395	T	C	121780395	2	2	194	1	0	0	0	0	0	0	0	1	14841	1538	54	2		2	SNCAIP	5	121780395	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1758150	121780395	59134865	491	24647											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123983650	123983650	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF608	NM_020747	exon4	c.A2427G	p.K809K	TTTGTCTTTGAGT	.	127	36	169	0	.	229	C	123983650	T	C	123983650	2	2	194	1	0	0	0	0	0	0	0	1	18031	1606	56	2		2	ZNF608	5	123983650	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2203255	123983650	56931610	492	24648											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127609596	127609596	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN2	NM_001999	exon61	c.A7776C	p.P2592P	ACTGCCTGGAGTG	.	150	78	202	0	.	146	G	127609596	T	G	127609596	2	3	194	1	0	0	0	0	0	0	0	1	5703	1567	55	5		5	FBN2	5	127609596	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3625946	127609596	53305664	493	24649											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127653902	127653902	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN2	NM_001999	exon36	c.T4656C	p.G1552G	ATAGCGACCAGGC	.	181	94	236	0	.	146	G	127653902	A	G	127653902	2	3	194	1	0	0	0	0	0	0	0	1	5703	262	10	2		2	FBN2	5	127653902	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	44306	127653902	53261358	494	24650											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131066598	131066598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FNIP1	NM_001008738	exon3	c.A353T	p.Q118L	CTTACCTGGTACT	.	115	46	172	0	.	92	A	131066598	T	A	131066598	3	1	194	1	0	0	0	0	1	0	0	0	5975	1594	55	4	3211	4	FNIP1	5	131066598	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3412696	131066598	49848662	495	24651											
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	131607517	131607517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDLIM4	NM_003687	exon6	c.T704A	p.L235H	GGAACCTCAAGCC	.	61	18	62	0	.	91	A	131607517	T	A	131607517	3	1	194	1	0	0	0	0	1	0	0	0	11682	1551	54	4	726	4	PDLIM4	5	131607517	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	540919	131607517	49307743	496	24652											
TCF7	6932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133451714	133451714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCF7	NM_003202	exon3	c.A431T	p.Q144L	AGCCGCAGCCCCC	.	76	35	149	0	.	90	T	133451714	A	T	133451714	3	4	194	1	0	0	0	0	1	0	0	0	15693	188	7	4	441	4	TCF7	5	133451714	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1844197	133451714	47463546	497	24653											
CDKL3	51265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133644327	133644327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDKL3	NM_001113575	exon8	c.A973T	p.R325W	CTTTCCTGAGTTC	.	47	26	57	0	.	389	A	133644327	T	A	133644327	3	1	194	1	0	0	0	0	1	0	0	0	3155	1579	55	4	833	4	CDKL3	5	133644327	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	192613	133644327	47270933	498	24654											
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134109540	134109540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX46	NM_014829	exon5	c.A602G	p.E201G	GTTTAGAGGACGA	.	116	69	175	0	.	227	G	134109540	A	G	134109540	3	3	194	1	0	0	0	0	1	0	0	0	4364	304	11	2	620	2	DDX46	5	134109540	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	465213	134109540	46805720	499	24655											
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138760775	138760775	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC18	NM_152686	exon5	c.A588G	p.T196T	GTCATCTGTCACA	.	53	27	57	0	.	227	C	138760775	T	C	138760775	2	2	194	1	0	0	0	0	0	0	0	1	4637	1567	55	2		2	DNAJC18	5	138760775	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4651235	138760775	42154485	500	24656											
ECSCR	641700	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	138837135	138837135	+	Missense_Mutation	SNP	G	G	T	rs199523425	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	CCTGGGGTACCAG	.	73	43	105	1	.	.	T	138837135	G	T	138837135	3	4	194	1	0	0	0	0	1	0	0	0	4899	1261	44	3	9	3	ECSCR	5	138837135	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	76360	138837135	42078125	501	24657											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139193135	139193135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSD2	NM_032289	exon3	c.T613A	p.F205I	ATGGCGTTTGAGG	.	78	49	93	0	.	91	A	139193135	T	A	139193135	3	1	194	1	0	0	0	0	1	0	0	0	12647	1725	60	4	619	4	PSD2	5	139193135	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	356000	139193135	41722125	502	24658											
HARS	3035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140056273	140056273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HARS	NM_002109	exon10	c.A1160G	p.E387G	ATCCGCTCCACCC	.	76	28	120	0	.	92	C	140056273	T	C	140056273	3	2	194	1	0	0	0	0	1	0	0	0	6959	1551	54	2	385	2	HARS	5	140056273	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	863138	140056273	40858987	503	24659											
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140180880	140180880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA3	NM_031497	exon1	c.A98T	p.Y33F	TCCACTACTCCGT	.	34	17	25	0	.	98	T	140180880	A	T	140180880	3	4	194	1	0	0	0	0	1	0	0	0	11525	391	14	4	100	4	PCDHA3	5	140180880	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	124607	140180880	40734380	504	24660											
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215472	140215472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	PCDHA7,NS,carcinoma,-1	PCDHA7	NM_031852	exon1	c.C1504G	p.R502G	GGCGAGCGCGCGC	.	50	14	53	0	.	94	G	140215472	C	G	140215472	3	3	194	1	0	0	0	0	1	0	0	0	11529	768	27	4	1506	4	PCDHA7	5	140215472	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	34592	140215472	40699788	505	24661											
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237048	140237048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA10	NM_031859	exon1	c.A1415T	p.H472L	GCTGCCACATCTT	.	78	72	94	0	.	99	T	140237048	A	T	140237048	3	4	194	1	0	0	0	0	1	0	0	0	11520	159	6	4	1417	4	PCDHA10	5	140237048	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	21576	140237048	40678212	506	24662											
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140237342	140237342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA10	NM_031859	exon1	c.G1709T	p.G570V	CCGCTGGCAGCGC	.	24	21	25	0	.	99	T	140237342	G	T	140237342	3	4	194	1	0	0	0	0	1	0	0	0	11520	1203	42	3	1711	3	PCDHA10	5	140237342	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	294	140237342	40677918	507	24663											
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140257188	140257188	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018903	exon1	c.C2131T	p.L711L	AGCCTGCTGGTGC	.	67	36	78	0	.	.	T	140257188	C	T	140257188	2	4	194	1	0	0	0	0	0	0	0	1	11522	796	28	3		3	PCDHA12	5	140257188	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	19846	140257188	40658072	508	24664											
PCDHA13	56136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140263324	140263324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA13	NM_031865	exon1	c.T1471A	p.S491T	CTGGTCTCCTACT	.	80	37	102	0	.	75	A	140263324	T	A	140263324	3	1	194	1	0	0	0	0	1	0	0	0	11523	1551	54	4	1473	4	PCDHA13	5	140263324	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6136	140263324	40651936	509	24665											
PCDHB2	56133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140474700	140474700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB2	NM_018936	exon1	c.A326T	p.Q109L	CTTTCCAGGTGTT	.	125	67	134	1	.	96	T	140474700	A	T	140474700	3	4	194	1	0	0	0	0	1	0	0	0	11542	188	7	4	328	4	PCDHB2	5	140474700	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	211376	140474700	40440560	510	24666											
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140480277	140480277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB3	NM_018937	exon1	c.T44C	p.L15S	AAGTCTTGCTTCT	.	77	29	112	0	.	92	C	140480277	T	C	140480277	3	2	194	1	0	0	0	0	1	0	0	0	11543	1821	63	2	46	2	PCDHB3	5	140480277	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5577	140480277	40434983	511	24667											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140572209	140572209	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB10	NM_018930	exon1	c.T84C	p.S28S	AGGTTCTGGGTTT	.	290	146	377	0	.	92	C	140572209	T	C	140572209	2	2	194	1	0	0	0	0	0	0	0	1	11535	1567	55	2		2	PCDHB10	5	140572209	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	91932	140572209	40343051	512	24668											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140725276	140725276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGA3	NM_032011	exon1	c.C1676T	p.A559V	ACAACGCGCCCGA	.	68	26	92	0	.	68	T	140725276	C	T	140725276	3	4	194	1	0	0	0	0	1	0	0	0	11555	768	27	1	1678	1	PCDHGA3	5	140725276	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	153067	140725276	40189984	513	24669											
PCDHGB3	56102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140751344	140751344	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018924	exon1	c.A1383T	p.V461V	GCATGTAGCTGAG	.	64	33	93	0	.	.	T	140751344	A	T	140751344	2	4	194	1	0	0	0	0	0	0	0	1	11564	407	15	4		4	PCDHGB3	5	140751344	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	26068	140751344	40163916	514	24670											
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140793269	140793269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032090	exon1	c.T527A	p.L176H	ATCAGCTCAGCCC	.	54	36	68	0	.	.	A	140793269	T	A	140793269	3	1	194	1	0	0	0	0	1	0	0	0	11551	1551	54	4	529	4	PCDHGA10	5	140793269	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	41925	140793269	40121991	515	24671											
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140794504	140794504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032090	exon1	c.C1762T	p.P588S	GCAGAGCCCGGCT	.	45	13	50	0	.	.	T	140794504	C	T	140794504	3	4	194	1	0	0	0	0	1	0	0	0	11551	739	26	3	1764	3	PCDHGA10	5	140794504	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1235	140794504	40120756	516	24672											
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140856012	140856012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGC3	NM_032402	exon1	c.T329C	p.L110S	TGGAGTTGGTAGT	.	95	61	108	0	.	24	C	140856012	T	C	140856012	3	2	194	1	0	0	0	0	1	0	0	0	11569	1821	63	2	331	2	PCDHGC3	5	140856012	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	61508	140856012	40059248	517	24673											
ADRB2	154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148206948	148206948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRB2	NM_000024	exon1	c.A554G	p.Y185C	ACTGCTATGCCAA	.	51	19	53	0	.	523	G	148206948	A	G	148206948	3	3	194	1	0	0	0	0	1	0	0	0	341	449	16	2	556	2	ADRB2	5	148206948	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7350936	148206948	32708312	518	24674											
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148406142	148406142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3TC2	NM_024577	exon12	c.A3046T	p.T1016S	TGGCGGTATTTAG	.	126	58	167	0	.	92	A	148406142	T	A	148406142	3	1	194	1	0	0	0	0	1	0	0	0	14262	1638	57	4	844	4	SH3TC2	5	148406142	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	199194	148406142	32509118	519	24675											
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	149602599	149602599	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAMK2A	NM_015981	exon18	c.G1419A	p.W473X	GATCTGCCATTTG	.	39	20	61	0	.	333	T	149602599	C	T	149602599	4	4	194	1	0	0	0	0	0	1	0	0	2599	740	26	3	58	3	CAMK2A	5	149602599	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1196457	149602599	31312661	520	24676											
SLC36A2	153201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150704910	150704910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC36A2	NM_181776	exon8	c.T947A	p.L316Q	TAGCCCAGAGCCG	.	40	17	69	0	.	91	T	150704910	A	T	150704910	3	4	194	1	0	0	0	0	1	0	0	0	14594	188	7	4	516	4	SLC36A2	5	150704910	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1102311	150704910	30210350	521	24677											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150945854	150945854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT2	NM_001447	exon1	c.A2639C	p.H880P	TCCAGGTGTCCTG	.	84	33	107	0	.	96	G	150945854	T	G	150945854	3	3	194	1	0	0	0	0	1	0	0	0	5690	1696	59	5	10502	5	FAT2	5	150945854	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	240944	150945854	29969406	522	24678											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150946124	150946124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT2	NM_001447	exon1	c.T2369C	p.V790A	ACTGTTACATTGA	.	51	24	52	0	.	96	G	150946124	A	G	150946124	3	3	194	1	0	0	0	0	1	0	0	0	5690	391	14	2	10772	2	FAT2	5	150946124	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	270	150946124	29969136	523	24679											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154287223	154287223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEMIN5	NM_015465	exon16	c.A2323G	p.N775D	CACCATTCTCAAC	.	89	28	132	0	.	228	C	154287223	T	C	154287223	3	2	194	1	0	0	0	0	1	0	0	0	6331	1783	62	2	2255	2	GEMIN5	5	154287223	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3341099	154287223	26628037	524	24680											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154317547	154317547	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEMIN5	NM_015465	exon1	c.A147G	p.P49P	TGTCCCTGGACTC	.	127	60	139	0	.	228	C	154317547	T	C	154317547	2	2	194	1	0	0	0	0	0	0	0	1	6331	1567	55	2		2	GEMIN5	5	154317547	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	30324	154317547	26597713	525	24681											
FAM71B	153745	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156593123	156593123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM71B	NM_130899	exon1	c.T57A	p.S19R	GAACGCACTCATT	.	79	33	140	1	.	96	T	156593123	A	T	156593123	3	4	194	1	0	0	0	0	1	0	0	0	5608	156	6	4	1768	4	FAM71B	5	156593123	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2275576	156593123	24322137	526	24682											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	157065688	157065688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOX30	NM_178424	exon4	c.A1430T	p.Q477L	GGGCTCTGGACTG	.	55	29	71	0	.	91	A	157065688	T	A	157065688	3	1	194	1	0	0	0	0	1	0	0	0	14952	1580	55	4	839	4	SOX30	5	157065688	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	472565	157065688	23849572	527	24683											
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159519900	159519900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PWWP2A	NM_001130864	exon2	c.A1757T	p.D586V	GTGCTATCAATGC	.	33	13	41	0	.	68	A	159519900	T	A	159519900	3	1	194	1	0	0	0	0	1	0	0	0	12845	1435	50	4	656	4	PWWP2A	5	159519900	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2454212	159519900	21395360	528	24684											
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159519933	159519933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PWWP2A	NM_001130864	exon2	c.C1724G	p.S575C	GAGTCAGATTTCT	.	39	17	45	0	.	68	C	159519933	G	C	159519933	3	2	194	1	0	0	0	0	1	0	0	0	12845	942	33	4	689	4	PWWP2A	5	159519933	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	33	159519933	21395327	529	24685											
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160753450	160753450	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRB2	NM_021911	exon10	c.T1116C	p.Y372Y	GGATCGATATTGG	.	55	16	53	0	.	91	G	160753450	A	G	160753450	2	3	194	1	0	0	0	0	0	0	0	1	6167	340	12	2		2	GABRB2	5	160753450	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1233517	160753450	20161810	530	24686											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169122911	169122911	+	Silent	SNP	G	G	T	rs199921409	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon10	c.G948T	p.T316T	GTGCACGCAGGGA	.	56	16	75	0	G|0.999;A|0.001	97	T	169122911	G	T	169122911	2	4	194	1	0	0	0	0	0	0	0	1	4687	1074	38	1		1	DOCK2	5	169122911	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	8369461	169122911	11792349	531	24687											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169144485	169144485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon21	c.A2129T	p.Y710F	TGGCTTACAAGTA	.	64	35	96	0	.	97	T	169144485	A	T	169144485	3	4	194	1	0	0	0	0	1	0	0	0	4687	391	14	4	2211	4	DOCK2	5	169144485	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	21574	169144485	11770775	532	24688											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169188534	169188534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon25	c.A2459C	p.Y820S	TCCTGTATGAGTT	.	52	20	77	0	.	97	C	169188534	A	C	169188534	3	2	194	1	0	0	0	0	1	0	0	0	4687	449	16	5	2557	5	DOCK2	5	169188534	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	44049	169188534	11726726	533	24689											
STC2	8614	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	172744894	172744894	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STC2	NM_003714	exon4	c.G865T	p.E289X	CCCACTCGCTGCT	.	49	22	76	2	.	93	A	172744894	C	A	172744894	4	1	194	1	0	0	0	0	0	1	0	0	15275	893	31	1	47	1	STC2	5	172744894	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3556360	172744894	8170366	534	24690											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176637954	176637954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NSD1	NM_022455	exon5	c.A2554G	p.I852V	AGTGACATAGAAA	.	66	32	88	0	.	188	G	176637954	A	G	176637954	3	3	194	1	0	0	0	0	1	0	0	0	10669	217	8	2	2568	2	NSD1	5	176637954	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3893060	176637954	4277306	535	24691											
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176814993	176814993	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC34A1	NM_001167579	exon7	c.645-2A>T	.	CTGCCCAGGGCCT	.	48	27	69	0	.	91	T	176814993	A	T	176814993	5	4	194	1	0	0	0	0	0	0	1	0	14567	202	7	4	665	4	SLC34A1	5	176814993	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	177039	176814993	4100267	536	24692											
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178359135	178359135	+	Missense_Mutation	SNP	A	A	G	rs147320919	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP2	NM_030613	exon5	c.A821G	p.Q274R	GTAGTCAATGTGG	.	55	33	90	0	A|1.000;C|0.000	93	G	178359135	A	G	178359135	3	3	194	1	0	0	0	0	1	0	0	0	17638	130	5	2	823	2	ZFP2	5	178359135	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1544142	178359135	2556125	537	24693											
ADAMTS2	9509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178566986	178566986	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS2	NM_014244	exon11	c.G1680C	p.R560R	GCCGTCCCGTTTG	.	22	10	59	0	.	228	G	178566986	C	G	178566986	2	3	194	1	0	0	0	0	0	0	0	1	265	610	22	4		4	ADAMTS2	5	178566986	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	207851	178566986	2348274	538	24694											
FLT4	2324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180037027	180037027	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLT4	NM_182925	exon29	c.3687-2A>T	.	AATACCTGTGGGG	.	47	17	62	1	.	1490	A	180037027	T	A	180037027	5	1	194	1	0	0	0	0	0	0	1	0	5944	1594	55	4	426	4	FLT4	5	180037027	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1470041	180037027	878233	539	24695											
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180661725	180661725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM41	NM_033549	exon6	c.C1843A	p.P615T	GTCTTTCCTTTCT	.	50	15	75	0	.	226	A	180661725	C	A	180661725	3	1	194	1	0	0	0	0	1	0	0	0	16513	855	30	3	1865	3	TRIM41	5	180661725	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	624698	180661725	253535	540	24696											
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	12749960	12749960	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_030948	exon4	c.T188A	p.V63E	GGAGAGTGCGCTC	.	38	17	40	0	.	.	A	12749960	T	A	12749960	3	1	194	1	0	0	0	0	1	0	0	0	11809	1696	59	4	194	4	PHACTR1	6	12749960	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		12749960	158365107	541	24697											
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13160509	13160509	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_030948	exon6	c.T489C	p.Y163Y	AATCTATGATAAA	.	88	24	67	0	.	.	C	13160509	T	C	13160509	2	2	194	1	0	0	0	0	0	0	0	1	11809	1471	51	2		2	PHACTR1	6	13160509	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	410549	13160509	157954558	542	24698											
CCDC90A	63933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13791091	13791091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC90A	NM_001031713	exon9	c.A1030G	p.I344V	TAAATATAGACCC	.	218	92	190	0	.	90	C	13791091	T	C	13791091	3	2	194	1	0	0	0	0	1	0	0	0	2868	1406	49	2	53	2	CCDC90A	6	13791091	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	630582	13791091	157323976	543	24699											
RNF144B	255488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18465185	18465185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF144B	NM_182757	exon8	c.A799G	p.I267V	TTGGGCATCATTG	.	135	64	118	0	.	226	G	18465185	A	G	18465185	3	3	194	1	0	0	0	0	1	0	0	0	13446	217	8	2	825	2	RNF144B	6	18465185	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4674094	18465185	152649882	544	24700											
MBOAT1	154141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20124804	20124804	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MBOAT1	NM_001080480	exon8	c.A742T	p.T248S	CCAAGGTGATGCC	.	184	72	171	2	.	68	A	20124804	T	A	20124804	3	1	194	1	0	0	0	0	1	0	0	0	9356	1696	59	4	769	4	MBOAT1	6	20124804	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1659619	20124804	150990263	545	24701											
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25983702	25983702	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM38	NM_006355	exon8	c.A1185T	p.A395A	TGTAGCACTTACT	.	85	32	96	0	.	226	T	25983702	A	T	25983702	2	4	194	1	0	0	0	0	0	0	0	1	16509	146	6	4		4	TRIM38	6	25983702	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5858898	25983702	145131365	546	24702											
HFE	3077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26091582	26091582	+	Silent	SNP	A	A	G	rs28934595	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HFE	NM_139006	exon3	c.A381G	p.Q127Q	AATGCAAGAAGAC	.	176	81	150	0	A|1.000;|0.000	90	G	26091582	A	G	26091582	2	3	194	1	0	0	0	0	0	0	0	1	7081	69	3	2		2	HFE	6	26091582	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	107880	26091582	145023485	547	24703											
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28268678	28268678	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGBD1	NM_001184743	exon7	c.A1047G	p.R349R	AGCTCGAGTGAGT	.	91	48	92	0	.	94	G	28268678	A	G	28268678	2	3	194	1	0	0	0	0	0	0	0	1	11780	291	11	2		2	PGBD1	6	28268678	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2177096	28268678	142846389	548	24704											
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080029	29080029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2J3	NM_001005216	exon1	c.T362A	p.M121K	TGGTGATGTCCTA	.	133	55	143	0	.	90	A	29080029	T	A	29080029	3	1	194	1	0	0	0	0	1	0	0	0	11004	1464	51	4	364	4	OR2J3	6	29080029	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	811351	29080029	142035038	549	24705											
OR2J2	26707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29141976	29141976	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2J2	NM_030905	exon1	c.A564G	p.L188L	GCGTTTATCATGT	.	81	37	90	0	.	68	G	29141976	A	G	29141976	2	3	194	1	0	0	0	0	0	0	0	1	11003	446	16	2		2	OR2J2	6	29141976	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	61947	29141976	141973091	550	24706											
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29343000	29343000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR12D3	NM_030959	exon1	c.A65T	p.Q22L	AAAGGCTGCAGCT	.	208	77	250	0	.	133	A	29343000	T	A	29343000	3	1	194	1	0	0	0	0	1	0	0	0	10932	1580	55	4	889	4	OR12D3	6	29343000	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	201024	29343000	141772067	551	24707											
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29408614	29408614	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10C1	NM_013941	exon1	c.C822A	p.S274S	GGTGTCCCTCTTC	.	81	35	90	0	.	22	A	29408614	C	A	29408614	2	1	194	1	0	0	0	0	0	0	0	1	10898	610	22	3		3	OR10C1	6	29408614	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	65614	29408614	141706453	552	24708											
OR2H2	7932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29556136	29556136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2H2	NM_007160	exon1	c.T415G	p.C139G	CGCCTGTGCTGGC	.	66	39	97	0	.	22	G	29556136	T	G	29556136	3	3	194	1	0	0	0	0	1	0	0	0	11002	1696	59	5	417	5	OR2H2	6	29556136	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	147522	29556136	141558931	553	24709											
GABBR1	2550	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29595353	29595353	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABBR1	NM_001470	exon6	c.G567A	p.Q189Q	CGCGGGCTGGCAG	.	27	11	21	1	.	521	T	29595353	C	T	29595353	2	4	194	1	0	0	0	0	0	0	0	1	6155	796	28	3		3	GABBR1	6	29595353	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	39217	29595353	141519714	554	24710											
MOG	4340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29627246	29627246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOG	NM_001008229	exon2	c.A239T	p.Y80F	ATCTCTACAGAAA	.	131	62	147	2	.	515	T	29627246	A	T	29627246	3	4	194	1	0	0	0	0	1	0	0	0	9693	391	14	4	245	4	MOG	6	29627246	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	31893	29627246	141487821	555	24711											
MDC1	9656	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30671686	30671686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDC1	NM_014641	exon10	c.G5274T	p.W1758C	TGCTCCCCATCTT	.	65	24	80	1	.	273	A	30671686	C	A	30671686	3	1	194	1	0	0	0	0	1	0	0	0	9403	624	22	3	1019	3	MDC1	6	30671686	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1044440	30671686	140443381	556	24712											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30892148	30892148	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	VARS2,NS,carcinoma,+2	VARS2	NM_001167734	exon26	c.G2574C	p.V858V	GCCCGTGCTGTGG	.	81	36	87	0	.	26	C	30892148	G	C	30892148	2	2	194	1	0	0	0	0	0	0	0	1	17121	1306	46	4		4	VARS2	6	30892148	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	220462	30892148	140222919	557	24713											
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30919181	30919181	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPCR1	NM_080870	exon2	c.T2940A	p.P980P	AGAGCCTACAGAA	.	70	36	62	0	.	90	A	30919181	T	A	30919181	2	1	194	1	0	0	0	0	0	0	0	1	4712	1509	53	4		4	DPCR1	6	30919181	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	27033	30919181	140195886	558	24714											
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30955029	30955029	+	Silent	SNP	A	A	T	rs41288693		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC21	NM_001010909	exon2	c.A1077T	p.T359T	CAGCACAGCCACC	.	35	13	29	0	.	92	T	30955029	A	T	30955029	2	4	194	1	0	0	0	0	0	0	0	1	9977	175	7	4		4	MUC21	6	30955029	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	35848	30955029	140160038	559	24715											
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31935153	31935153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SKIV2L	NM_006929	exon21	c.A2582T	p.Q861L	TCCTACAGGTGAG	.	108	46	83	0	.	290	T	31935153	A	T	31935153	3	4	194	1	0	0	0	0	1	0	0	0	14359	202	7	4	2664	4	SKIV2L	6	31935153	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	980124	31935153	139179914	560	24716											
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32007351	32007351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYP21A2	.	.	.	.	ATTACAAATGTAT	.	613	159	557	0	.	68	G	32007351	A	G	32007351	3	3	194	1	0	0	0	0	1	0	0	0	4153	14	1	2	2117	2	CYP21A2	6	32007351	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	72198	32007351	139107716	561	24717											
GPSM3	63940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32159648	32159648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPSM3	NM_022107	exon7	c.G183T	p.Q61H	TTCAGTCTGCAGG	.	106	21	105	0	.	90	A	32159648	C	A	32159648	3	1	194	1	0	0	0	0	1	0	0	0	6736	912	32	3	307	3	GPSM3	6	32159648	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	152297	32159648	138955419	562	24718											
COL11A2	1302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33143844	33143844	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A2	NM_080680	exon29	c.T2217C	p.G739G	ATCCTCACCCTGA	.	91	25	93	1	.	95	G	33143844	A	G	33143844	2	3	194	1	0	0	0	0	0	0	0	1	3668	146	6	2		2	COL11A2	6	33143844	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	984196	33143844	137971223	563	24719											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33655094	33655094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPR3	NM_002224	exon45	c.T6167A	p.L2056Q	ATATCCTGGCGCT	.	55	28	51	0	.	1085	A	33655094	T	A	33655094	3	1	194	1	0	0	0	0	1	0	0	0	7922	1580	55	4	6345	4	ITPR3	6	33655094	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	511250	33655094	137459973	564	24720											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38816528	38816528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH8	NM_001206927	exon37	c.A5150G	p.Y1717C	GGGTTTATCTTGA	.	107	48	107	0	.	615	G	38816528	A	G	38816528	3	3	194	1	0	0	0	0	1	0	0	0	4607	449	16	2	4629	2	DNAH8	6	38816528	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5161434	38816528	132298539	565	24721											
GLP1R	2740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39040694	39040694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLP1R	NM_002062	exon6	c.T566A	p.L189Q	TCATCCTGCGAGC	.	71	43	62	0	.	659	A	39040694	T	A	39040694	3	1	194	1	0	0	0	0	1	0	0	0	6452	1580	55	4	588	4	GLP1R	6	39040694	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	224166	39040694	132074373	566	24722											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42562032	42562032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBR2	NM_001184801	exon4	c.A521G	p.E174G	AAATTGAGGAAGA	.	96	31	92	0	.	94	G	42562032	A	G	42562032	3	3	194	1	0	0	0	0	1	0	0	0	16899	304	11	2	535	2	UBR2	6	42562032	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3521338	42562032	128553035	567	24723											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155009	43155009	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CUL9	NM_015089	exon6	c.T1413A	p.P471P	GAATCCTATGGAT	.	86	35	72	0	.	529	A	43155009	T	A	43155009	2	1	194	1	0	0	0	0	0	0	0	1	4061	1509	53	4		4	CUL9	6	43155009	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	592977	43155009	127960058	568	24724											
TCTE1	202500	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	44253945	44253945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCTE1	NM_182539	exon3	c.A602G	p.Q201R	GGGAGCTGCACCG	.	40	14	46	1	.	94	C	44253945	T	C	44253945	3	2	194	1	0	0	0	0	1	0	0	0	15714	1580	55	2	915	2	TCTE1	6	44253945	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1098936	44253945	126861122	569	24725											
MEP1A	4224	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	46801092	46801092	+	Nonsense_Mutation	SNP	A	A	T	rs12197930	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEP1A	NM_005588	exon11	c.A1426T	p.R476X	AATAGCAGAGAAA	.	37	15	55	0	A|0.957;G|0.043	183	T	46801092	A	T	46801092	4	4	194	1	0	0	0	0	0	1	0	0	9475	180	7	4	1468	4	MEP1A	6	46801092	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2547147	46801092	124313975	570	24726											
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49937307	49937307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DEFB113	NM_001037729	exon1	c.T32C	p.V11A	GTGAAGACAAAGG	.	72	31	84	0	.	90	G	49937307	A	G	49937307	3	3	194	1	0	0	0	0	1	0	0	0	4402	275	10	2	216	2	DEFB113	6	49937307	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3136215	49937307	121177760	571	24727											
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50712859	50712859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TFAP2D	NM_172238	exon6	c.G923T	p.C308F	ACACTTGTGAAAC	.	203	91	179	0	.	159	T	50712859	G	T	50712859	3	4	194	1	0	0	0	0	1	0	0	0	15787	1377	48	3	945	3	TFAP2D	6	50712859	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	775552	50712859	120402208	572	24728											
PKHD1	5314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51491880	51491880	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1	NM_138694	exon66	c.T11700A	p.T3900T	ATTATTAGTCTGG	.	42	16	83	1	.	603	T	51491880	A	T	51491880	2	4	194	1	0	0	0	0	0	0	0	1	11971	407	15	4		4	PKHD1	6	51491880	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	779021	51491880	119623187	573	24729											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51890688	51890688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1	NM_170724	exon32	c.A3920G	p.Q1307R	TCTCCTTGCATGG	.	96	44	97	0	.	603	C	51890688	T	C	51890688	3	2	194	1	0	0	0	0	1	0	0	0	11971	1812	63	2	8487	2	PKHD1	6	51890688	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	398808	51890688	119224379	574	24730											
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	52129386	52129386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM3	NM_002388	exon17	c.A2562T	p.X854C	GCCTCCTCAGATG	.	56	28	66	0	.	228	A	52129386	T	A	52129386	3	1	194	1	0	0	0	0	1	0	0	0	9387	1564	54	4	3	4	MCM3	6	52129386	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	238698	52129386	118985681	575	24731											
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55142234	55142234	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HCRTR2	NM_001526	exon5	c.A819G	p.S273S	TGTTTCACAGCCT	.	130	63	161	0	.	525	G	55142234	A	G	55142234	2	3	194	1	0	0	0	0	0	0	0	1	7002	146	6	2		2	HCRTR2	6	55142234	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3012848	55142234	115972833	576	24732											
COL21A1	81578	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55940292	55940292	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL21A1	NM_030820	exon19	c.A1896G	p.G632G	TGGGGCTCCTTTT	.	138	55	183	1	.	24	C	55940292	T	C	55940292	2	2	194	1	0	0	0	0	0	0	0	1	3680	1538	54	2		2	COL21A1	6	55940292	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	798058	55940292	115174775	577	24733											
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56993604	56993604	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF451	NM_001031623	exon5	c.A390T	p.A130A	AGCAGCAAGACTG	.	107	32	82	0	.	93	T	56993604	A	T	56993604	2	4	194	1	0	0	0	0	0	0	0	1	17919	117	5	4		4	ZNF451	6	56993604	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1053312	56993604	114121463	578	24734											
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65301602	65301602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EYS	NM_001142800	exon26	c.T4158G	p.D1386E	TCTCCTATCAGGA	.	74	28	95	1	.	660	C	65301602	A	C	65301602	3	2	194	1	0	0	0	0	1	0	0	0	5332	446	16	5	5193	5	EYS	6	65301602	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8307998	65301602	105813465	579	24735											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	66204911	66204911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EYS	NM_001142801	exon4	c.393delA	p.K131fs	CATTCCTTTTAGT	.	99	44	102	0	.	660	-	66204911	T	-	66204911	7	5	194	1	0	1	0	1	0	0	0	0	5332	1606	56	0	9163	0	EYS	6	66204911	Frame_Shift_Del	DEL	T	TCGA-UB-A7MB-01A-11D-A33Q-10	903309	66204911	104910156	580	24736											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69949085	69949085	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BAI3	NM_001704	exon20	c.C2781T	p.L927L	TATCCTCATACTG	.	89	35	98	0	.	1148	T	69949085	C	T	69949085	2	4	194	1	0	0	0	0	0	0	0	1	1300	813	29	3		3	BAI3	6	69949085	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3744174	69949085	101165982	581	24737											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70935655	70935655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A1	NM_001851	exon37	c.C2561A	p.P854H	GCTCCAGGCAAAC	.	66	36	83	0	.	94	T	70935655	G	T	70935655	3	4	194	1	0	0	0	0	1	0	0	0	3707	1000	35	3	212	3	COL9A1	6	70935655	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	986570	70935655	100179412	582	24738											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76576647	76576647	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO6	NM_004999	exon18	c.1771-2A>T	.	TTTTTCAGACCCA	.	64	35	63	0	.	92	T	76576647	A	T	76576647	5	4	194	1	0	0	0	0	0	0	1	0	10081	202	7	4	1835	4	MYO6	6	76576647	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5640992	76576647	94538420	583	24739											
PHIP	55023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79657378	79657378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHIP	NM_017934	exon36	c.A4168T	p.S1390C	AATTACTGAAAAT	.	88	36	88	1	.	579	A	79657378	T	A	79657378	3	1	194	1	0	0	0	0	1	0	0	0	11842	1580	55	4	1317	4	PHIP	6	79657378	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3080731	79657378	91457689	584	24740											
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79770201	79770201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHIP	NM_017934	exon6	c.A433T	p.S145C	CAATGCTGGGTGG	.	52	22	62	0	.	579	A	79770201	T	A	79770201	3	1	194	1	0	0	0	0	1	0	0	0	11842	1580	55	4	5172	4	PHIP	6	79770201	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	112823	79770201	91344866	585	24741											
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80223068	80223068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCA5	NM_001122769	exon3	c.G581T	p.S194I	AGTTCACTTTCTG	.	148	64	187	0	.	90	A	80223068	C	A	80223068	3	1	194	1	0	0	0	0	1	0	0	0	8656	565	20	3	1536	3	LCA5	6	80223068	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	452867	80223068	90891999	586	24742											
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128124	88128124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf165	NM_001031743	exon7	c.A830T	p.Q277L	TCCTTCAGATCAT	.	61	28	71	0	.	90	T	88128124	A	T	88128124	3	4	194	1	0	0	0	0	1	0	0	0	2341	188	7	4	852	4	C6orf165	6	88128124	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7905056	88128124	82986943	587	24743											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90371171	90371171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDN1	NM_014611	exon88	c.A14692G	p.T4898A	TGTCGGTGTCCTC	.	103	39	130	0	.	100	C	90371171	T	C	90371171	3	2	194	1	0	0	0	0	1	0	0	0	9415	1696	59	2	2158	2	MDN1	6	90371171	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2243047	90371171	80743896	588	24744											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90371808	90371808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDN1	NM_014611	exon87	c.G14563T	p.E4855X	TTACCTCATCTAT	.	64	29	60	0	.	100	A	90371808	C	A	90371808	4	1	194	1	0	0	0	0	0	1	0	0	9415	835	29	3	2291	3	MDN1	6	90371808	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	637	90371808	80743259	589	24745											
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90661011	90661011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BACH2	NM_021813	exon7	c.A814T	p.R272W	GCCCCCTGGCAAG	.	44	24	55	0	.	231	A	90661011	T	A	90661011	3	1	194	1	0	0	0	0	1	0	0	0	1284	1579	55	4	1723	4	BACH2	6	90661011	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	289203	90661011	80454056	590	24746											
NDUFAF4	29078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	97339048	97339048	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDUFAF4	NM_014165	exon3	c.A460T	p.K154X	AATATTTAAGAAG	.	48	15	59	0	.	91	A	97339048	T	A	97339048	4	1	194	1	0	0	0	0	0	1	0	0	10277	1763	61	4	71	4	NDUFAF4	6	97339048	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6678037	97339048	73776019	591	24747											
ASCC3	10973	broad.mit.edu;mdanderson.org	37	6	101173567	101173567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASCC3	NM_006828	exon11	c.A1750C	p.T584P	CTGGTGTGGTCAC	.	86	11	89	1	.	96	G	101173567	T	G	101173567	3	3	194	1	0	0	0	0	1	0	0	0	1033	1696	59	5	4986	5	ASCC3	6	101173567	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3834519	101173567	69941500	592	24748											
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105572512	105572512	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BVES	NM_001199563	exon5	c.A558T	p.R186R	ATGTCCTCGATAG	.	30	10	45	0	.	90	A	105572512	T	A	105572512	2	1	194	1	0	0	0	0	0	0	0	1	1575	1538	54	4		4	BVES	6	105572512	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4398945	105572512	65542555	593	24749											
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107390413	107390413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BEND3	NM_001080450	exon5	c.A1982G	p.H661R	GGCACGTGGACCT	.	46	21	58	0	.	71	C	107390413	T	C	107390413	3	2	194	1	0	0	0	0	1	0	0	0	1399	1696	59	2	508	2	BEND3	6	107390413	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1817901	107390413	63724654	594	24750											
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110522886	110522886	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC40	NM_015891	exon3	c.A402G	p.T134T	TGCAACATATGGT	.	52	26	75	0	.	90	G	110522886	A	G	110522886	2	3	194	1	0	0	0	0	0	0	0	1	3070	204	8	2		2	CDC40	6	110522886	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3132473	110522886	60592181	595	24751											
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111587672	111587672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1919	NM_153369	exon4	c.A907G	p.I303V	AGCAACATTGGCA	.	91	44	113	0	.	93	G	111587672	A	G	111587672	3	3	194	1	0	0	0	0	1	0	0	0	8262	217	8	2	921	2	KIAA1919	6	111587672	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1064786	111587672	59527395	596	24752											
KIAA1919	91749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111587712	111587712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1919	NM_153369	exon4	c.A947G	p.D316G	TTTTTGACAAGAA	.	82	36	102	1	.	93	G	111587712	A	G	111587712	3	3	194	1	0	0	0	0	1	0	0	0	8262	275	10	2	961	2	KIAA1919	6	111587712	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	40	111587712	59527355	597	24753											
RFPL4B	442247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112671556	112671556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RFPL4B	NM_001013734	exon3	c.646delG	p.E216fs	GACTTAGAAGAAA	.	49	28	46	0	.	68	-	112671556	G	-	112671556	7	5	194	1	0	1	0	1	0	0	0	0	13256	943	33	0	648	0	RFPL4B	6	112671556	Frame_Shift_Del	DEL	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1083844	112671556	58443511	598	24754											
DSE	29940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116747748	116747748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSE	NM_001080976	exon3	c.A428G	p.D143G	TGAAAGATGCTCC	.	33	5	50	0	.	91	G	116747748	A	G	116747748	3	3	194	1	0	0	0	0	1	0	0	0	4774	333	12	2	434	2	DSE	6	116747748	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4076192	116747748	54367319	599	24755											
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116973312	116973312	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZUFSP	NM_145062	exon6	c.A1005T	p.T335T	CACATCTGTGGCA	.	75	23	97	0	.	69	A	116973312	T	A	116973312	2	1	194	1	0	0	0	0	0	0	0	1	18243	1567	55	4		4	ZUFSP	6	116973312	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	225564	116973312	54141755	600	24756											
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117047735	117047735	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KPNA5	NM_002269	exon12	c.A1203T	p.A401A	AGAAGCAGCTTGG	.	134	63	216	0	.	290	T	117047735	A	T	117047735	2	4	194	1	0	0	0	0	0	0	0	1	8433	175	7	4		4	KPNA5	6	117047735	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	74423	117047735	54067332	601	24757											
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117114124	117114124	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPRC6A	NM_148963	exon6	c.A1962T	p.P654P	GTCTTGTGGTTCT	.	87	45	120	0	.	96	A	117114124	T	A	117114124	2	1	194	1	0	0	0	0	0	0	0	1	6728	1683	59	4		4	GPRC6A	6	117114124	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	66389	117114124	54000943	602	24758											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117609770	117609770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROS1	NM_002944	exon43	c.A6929C	p.H2310P	TCTGCATGTGGTT	.	115	51	142	0	.	1353	G	117609770	T	G	117609770	3	3	194	1	0	0	0	0	1	0	0	0	13531	1464	51	5	118	5	ROS1	6	117609770	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	495646	117609770	53505297	603	24759											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121447529	121447529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf170	NM_152730	exon26	c.A2978G	p.Y993C	CCTGTATACTCCA	.	48	27	62	0	.	92	C	121447529	T	C	121447529	3	2	194	1	0	0	0	0	1	0	0	0	2344	1406	49	2	823	2	C6orf170	6	121447529	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3837759	121447529	49667538	604	24760											
C6orf170	221322	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563461	121563461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf170	NM_152730	exon18	c.A2043T	p.L681F	ATCATCTAACAAA	.	63	29	59	1	.	92	A	121563461	T	A	121563461	3	1	194	1	0	0	0	0	1	0	0	0	2344	1519	53	4	1790	4	C6orf170	6	121563461	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	115932	121563461	49551606	605	24761											
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128150865	128150865	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	THEMIS	NM_001010923	exon3	c.A465C	p.A155A	ATTCCTTGCTACT	.	74	33	109	0	.	94	G	128150865	T	G	128150865	2	3	194	1	0	0	0	0	0	0	0	1	15857	1799	63	5		5	THEMIS	6	128150865	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6587404	128150865	42964202	606	24762											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129498936	129498936	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon10	c.G1392T	p.P464P	CTACCCGGACTGC	.	110	47	149	0	.	162	T	129498936	G	T	129498936	2	4	194	1	0	0	0	0	0	0	0	1	8606	1103	39	1		1	LAMA2	6	129498936	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1348071	129498936	41616131	607	24763											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129618940	129618940	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon21	c.T2967A	p.P989P	CCAACCTGGAGTC	.	50	26	83	0	.	162	A	129618940	T	A	129618940	2	1	194	1	0	0	0	0	0	0	0	1	8606	1567	55	4		4	LAMA2	6	129618940	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	120004	129618940	41496127	608	24764											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129636779	129636779	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon25	c.A3714T	p.P1238P	ACTTCCAGAACAA	.	73	30	89	0	.	162	T	129636779	A	T	129636779	2	4	194	1	0	0	0	0	0	0	0	1	8606	175	7	4		4	LAMA2	6	129636779	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	17839	129636779	41478288	609	24765											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129823895	129823895	+	Missense_Mutation	SNP	A	A	T	rs202202014	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon59	c.A8336T	p.D2779V	CATTTGATGACAC	.	75	30	98	0	A|0.999;G|0.000	162	T	129823895	A	T	129823895	3	4	194	1	0	0	0	0	1	0	0	0	8606	333	12	4	8570	4	LAMA2	6	129823895	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	187116	129823895	41291172	610	24766											
SAMD3	154075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130497042	130497042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD3	NM_001017373	exon8	c.A766G	p.T256A	TCCTTGTCTGGCC	.	71	24	77	0	.	91	C	130497042	T	C	130497042	3	2	194	1	0	0	0	0	1	0	0	0	13820	1667	58	2	816	2	SAMD3	6	130497042	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	673147	130497042	40618025	611	24767											
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134638546	134638546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGK1	NM_001143676	exon1	c.A53G	p.Q18R	AAAAATTGGAAGG	.	93	37	138	0	.	981	C	134638546	T	C	134638546	3	2	194	1	0	0	0	0	1	0	0	0	14207	1812	63	2	1949	2	SGK1	6	134638546	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4141504	134638546	36476521	612	24768											
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	136599666	136599666	+	Missense_Mutation	SNP	C	C	T	rs147857152	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BCLAF1	NM_014739	exon4	c.G353A	p.R118K	ACGGATCTTCTTT	.	139	33	129	0	C|1.000;G|0.000	228	T	136599666	C	T	136599666	3	4	194	1	0	0	0	0	1	0	0	0	1383	913	32	3	2449	3	BCLAF1	6	136599666	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1961120	136599666	34515401	613	24769											
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137245642	137245642	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC35D3	NM_001008783	exon2	c.T1059A	p.G353G	AGCAGGTGGCCCC	.	39	14	51	0	.	91	A	137245642	T	A	137245642	2	1	194	1	0	0	0	0	0	0	0	1	14583	1683	59	4		4	SLC35D3	6	137245642	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	645976	137245642	33869425	614	24770											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139164260	139164260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ECT2L	NM_001195037	exon5	c.A487G	p.T163A	GCTGCTACTTATG	.	64	19	68	0	.	22	G	139164260	A	G	139164260	3	3	194	1	0	0	0	0	1	0	0	0	4902	391	14	2	501	2	ECT2L	6	139164260	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1918618	139164260	31950807	615	24771											
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146276324	146276324	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHPRH	NM_173082	exon2	c.A135T	p.P45P	TGAACCTGGGCAG	.	35	14	55	0	.	92	A	146276324	T	A	146276324	2	1	194	1	0	0	0	0	0	0	0	1	14291	1567	55	4		4	SHPRH	6	146276324	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7112064	146276324	24838743	616	24772											
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148848610	148848610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SASH1	NM_015278	exon12	c.T1306C	p.Y436H	TTTGTGTACAAAG	.	49	21	71	0	.	90	C	148848610	T	C	148848610	3	2	194	1	0	0	0	0	1	0	0	0	13848	1638	57	2	1352	2	SASH1	6	148848610	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2572286	148848610	22266457	617	24773											
SASH1	23328	broad.mit.edu;bcgsc.ca	37	6	148864814	148864814	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SASH1	NM_015278	exon18	c.2210-2A>T	.	TCTCACAGGCAAG	.	44	16	49	1	.	90	T	148864814	A	T	148864814	5	4	194	1	0	0	0	0	0	0	1	0	13848	202	7	4	2278	4	SASH1	6	148864814	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	16204	148864814	22250253	618	24774											
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151687080	151687080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZBTB2	NM_020861	exon3	c.A1121C	p.Q374P	CTTTTCTGGATAA	.	125	61	142	0	.	91	G	151687080	T	G	151687080	3	3	194	1	0	0	0	0	1	0	0	0	17525	1580	55	5	427	5	ZBTB2	6	151687080	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2822266	151687080	19427987	619	24775											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152555815	152555815	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNE1	NM_182961	exon111	c.A20517G	p.L6839L	AGCATTTAGATGA	.	69	31	97	0	.	607	C	152555815	T	C	152555815	2	2	194	1	0	0	0	0	0	0	0	1	15442	1741	61	2		2	SYNE1	6	152555815	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	868735	152555815	18559252	620	24776											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152831366	152831366	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNE1	NM_033071	exon8	c.G564A	p.K188K	AGCCTTCTTAGCA	.	101	9	129	0	.	607	T	152831366	C	T	152831366	2	4	194	1	0	0	0	0	0	0	0	1	15442	912	32	3		3	SYNE1	6	152831366	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	275551	152831366	18283701	621	24777											
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	153043211	153043211	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCT1	NM_025107	exon2	c.T531A	p.P177P	ACTTCCTGTGGAA	.	77	32	85	0	.	91	A	153043211	T	A	153043211	2	1	194	1	0	0	0	0	0	0	0	1	10022	1567	55	4		4	MYCT1	6	153043211	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	211845	153043211	18071856	622	24778											
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776903	155776903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOX3	NM_015718	exon1	c.T32C	p.L11P	GTGGAGAGACCCT	.	84	35	95	0	.	91	G	155776903	A	G	155776903	3	3	194	1	0	0	0	0	1	0	0	0	10557	304	11	2	1726	2	NOX3	6	155776903	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2733692	155776903	15338164	623	24779											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157528624	157528624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARID1B	NM_020732	exon20	c.A6349T	p.R2117W	TTAGTTAGGTACG	.	47	21	56	0	.	154	T	157528624	A	T	157528624	3	4	194	1	0	0	0	0	1	0	0	0	914	411	15	4	6427	4	ARID1B	6	157528624	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1751721	157528624	13586443	624	24780											
TAGAP	117289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159463252	159463252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAGAP	NM_138810	exon5	c.T173G	p.L58R	CAGGACAGCACCT	.	105	39	131	0	.	91	C	159463252	A	C	159463252	3	2	194	1	0	0	0	0	1	0	0	0	15534	188	7	5	2064	5	TAGAP	6	159463252	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1934628	159463252	11651815	625	24781											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160469571	160469571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGF2R	NM_000876	exon18	c.A2510G	p.D837G	AAAAAGATCAGGT	.	49	19	70	0	.	118	G	160469571	A	G	160469571	3	3	194	1	0	0	0	0	1	0	0	0	7576	333	12	2	2580	2	IGF2R	6	160469571	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1006319	160469571	10645496	626	24782											
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161160115	161160115	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLG	NM_000301	exon16	c.A1893G	p.S631S	GCCTTCATCCTAC	.	121	48	104	0	.	94	G	161160115	A	G	161160115	2	3	194	1	0	0	0	0	0	0	0	1	12086	204	8	2		2	PLG	6	161160115	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	690544	161160115	9954952	627	24783											
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161523729	161523729	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP3K4	NM_006724	exon18	c.3626-2A>T	.	TCCTGCAGAACCA	.	307	149	396	0	.	548	T	161523729	A	T	161523729	5	4	194	1	0	0	0	0	0	0	1	0	9252	202	7	4	3848	4	MAP3K4	6	161523729	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	363614	161523729	9591338	628	24784											
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165863831	165863831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE10A	NM_001130690	exon4	c.A245C	p.Q82P	ACTCCCTGCATAT	.	75	26	81	0	.	519	G	165863831	T	G	165863831	3	3	194	1	0	0	0	0	1	0	0	0	11630	1580	55	5	2200	5	PDE10A	6	165863831	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4340102	165863831	5251236	629	24785											
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	166578331	166578331	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	T	NM_003181	exon5	c.A625T	p.K209X	TGTACTTAATTTT	.	59	34	108	0	.	516	A	166578331	T	A	166578331	4	1	194	1	0	0	0	0	0	1	0	0	15485	1763	61	4	702	4	T	6	166578331	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	714500	166578331	4536736	630	24786											
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550197	167550197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR6	NM_004367	exon3	c.C479A	p.T160K	CCAGAACACTACC	.	58	18	78	0	.	227	A	167550197	C	A	167550197	3	1	194	1	0	0	0	0	1	0	0	0	2945	478	17	3	485	3	CCR6	6	167550197	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	971866	167550197	3564870	631	24787											
FAM120B	84498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170627636	170627636	+	Missense_Mutation	SNP	G	G	T	rs201916124		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM120B	NM_032448	exon2	c.G1158T	p.R386S	ACCCAGGCAAGAA	.	166	77	244	0	G|0.999;T|0.001	91	T	170627636	G	T	170627636	3	4	194	1	0	0	0	0	1	0	0	0	5417	1194	42	3	1160	3	FAM120B	6	170627636	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3077439	170627636	487431	632	24788											
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2317782	2317782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNX8	NM_013321	exon2	c.A253G	p.K85E	CCTTCTTCTCCGG	.	64	25	76	0	.	290	C	2317782	T	C	2317782	3	2	194	1	0	0	0	0	1	0	0	0	14908	1792	62	2	1184	2	SNX8	7	2317782	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		2317782	156820881	633	24789											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	2983944	2983944	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CARD11	NM_032415	exon5	c.A586T	p.K196X	TCACCTTGACCAG	.	99	45	127	0	.	870	A	2983944	T	A	2983944	4	1	194	1	0	0	0	0	0	1	0	0	2645	1821	63	4	2962	4	CARD11	7	2983944	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	666162	2983944	156154719	634	24790											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2987406	2987406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CARD11	NM_032415	exon3	c.T23G	p.M8R	TCATCCATCTCTG	.	103	45	102	0	.	870	C	2987406	A	C	2987406	3	2	194	1	0	0	0	0	1	0	0	0	2645	217	8	5	3533	5	CARD11	7	2987406	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3462	2987406	156151257	635	24791											
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4794986	4794986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXK1	NM_001037165	exon4	c.A1022G	p.Y341C	ACCCCTACTACCG	.	99	29	105	0	.	516	G	4794986	A	G	4794986	3	3	194	1	0	0	0	0	1	0	0	0	6014	391	14	2	1036	2	FOXK1	7	4794986	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1807580	4794986	154343677	636	24792											
RADIL	55698	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4843189	4843189	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RADIL	NM_018059	exon11	c.A2487C	p.P829P	GCACACTGGCTGG	.	47	18	41	0	.	994	G	4843189	T	G	4843189	2	3	194	1	0	0	0	0	0	0	0	1	12997	1567	55	5		5	RADIL	7	4843189	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	48203	4843189	154295474	637	24793											
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	5336593	5336593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC29A4	NM_153247	exon7	c.A646G	p.S216G	TCTCTGAGCCGCA	.	24	10	18	0	.	515	G	5336593	A	G	5336593	3	3	194	1	0	0	0	0	1	0	0	0	14537	304	11	2	668	2	SLC29A4	7	5336593	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	493404	5336593	153802070	638	24794											
TNRC18	84629	broad.mit.edu;mdanderson.org	37	7	5353216	5353216	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNRC18	NM_001080495	exon27	c.A7306T	p.K2436X	TGGGCTTGGGGCG	.	48	13	44	0	.	46	A	5353216	T	A	5353216	4	1	194	1	0	0	0	0	0	1	0	0	16336	1821	63	4	1616	4	TNRC18	7	5353216	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	16623	5353216	153785447	639	24795											
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5410083	5410083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNRC18	NM_001080495	exon11	c.A4142C	p.Q1381P	AAGCTCTGCTCCA	.	47	20	51	0	.	46	G	5410083	T	G	5410083	3	3	194	1	0	0	0	0	1	0	0	0	16336	1580	55	5	4844	5	TNRC18	7	5410083	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	56867	5410083	153728580	640	24796											
USP42	84132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6183734	6183734	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP42	NM_032172	exon9	c.A897T	p.P299P	GGTTCCAGCTTCA	.	64	25	73	0	.	659	T	6183734	A	T	6183734	2	4	194	1	0	0	0	0	0	0	0	1	17070	175	7	4		4	USP42	7	6183734	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	773651	6183734	152954929	641	24797											
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	7530242	7530242	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL28A1	NM_001037763	exon12	c.A1062T	p.P354P	AGCTCCTGGAGAA	.	87	39	62	0	.	93	A	7530242	T	A	7530242	2	1	194	1	0	0	0	0	0	0	0	1	3686	1567	55	4		4	COL28A1	7	7530242	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1346508	7530242	151608421	642	24798											
MIOS	54468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7612424	7612424	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIOS	NM_019005	exon4	c.A318G	p.K106K	AGGAAAAGAGTTT	.	89	36	87	0	.	90	G	7612424	A	G	7612424	2	3	194	1	0	0	0	0	0	0	0	1	9589	69	3	2		2	MIOS	7	7612424	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	82182	7612424	151526239	643	24799											
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8167517	8167517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ICA1	NM_022307	exon13	c.A1316T	p.Q439L	GAGGCCTGTAAGT	.	58	29	68	0	.	515	A	8167517	T	A	8167517	3	1	194	1	0	0	0	0	1	0	0	0	7477	1580	55	4	143	4	ICA1	7	8167517	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	555093	8167517	150971146	644	24800											
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	19184845	19184845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FERD3L	NM_152898	exon1	c.A141T	p.R47R	TCCCTCTCGGAGC	.	37	18	44	0	.	153	A	19184845	T	A	19184845	2	1	194	1	0	0	0	0	0	0	0	1	5816	1538	54	4		4	FERD3L	7	19184845	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	11017328	19184845	139953818	645	24801											
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20193914	20193914	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MACC1	NM_182762	exon6	c.T2248A	p.W750R	CCCTCCAGCCTTT	.	98	46	94	0	.	93	T	20193914	A	T	20193914	3	4	194	1	0	0	0	0	1	0	0	0	9143	188	7	4	318	4	MACC1	7	20193914	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1009069	20193914	138944749	646	24802											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20683101	20683101	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCB5	NM_001163941	exon7	c.G524C	p.S175T	AAATCAGTGATGG	.	96	11	102	0	.	158	C	20683101	G	C	20683101	3	2	194	1	0	0	0	0	1	0	0	0	44	1029	36	4	546	4	ABCB5	7	20683101	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	489187	20683101	138455562	647	24803											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20778743	20778743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCB5	NM_001163941	exon24	c.G3005T	p.S1002I	GCCGCAGTCAAGA	.	70	25	54	0	.	158	T	20778743	G	T	20778743	3	4	194	1	0	0	0	0	1	0	0	0	44	1029	36	3	3136	3	ABCB5	7	20778743	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	95642	20778743	138359920	648	24804											
DNAH11	8701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21630534	21630534	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH11	NM_001277115	exon13	c.2170-2A>T	.	TTTAATAGCTAGT	.	194	99	236	0	.	146	T	21630534	A	T	21630534	5	4	194	1	0	0	0	0	0	0	1	0	4599	434	15	4	2218	4	DNAH11	7	21630534	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	851791	21630534	137508129	649	24805											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21646303	21646303	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH11	.	.	.	.	ACACTATGCCCCT	.	57	26	65	0	.	146	C	21646303	T	C	21646303	2	2	194	1	0	0	0	0	0	0	0	1	4599	1471	51	2		2	DNAH11	7	21646303	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	15769	21646303	137492360	650	24806											
HOXA2	3199	broad.mit.edu;mdanderson.org	37	7	27141915	27141915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXA2	NM_006735	exon1	c.G205T	p.A69S	CGCCAGCGCCGTG	.	12	7	11	0	.	92	A	27141915	C	A	27141915	3	1	194	1	0	0	0	0	1	0	0	0	7292	768	27	1	933	1	HOXA2	7	27141915	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5495612	27141915	131996748	651	24807											
HOXA13	3209	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27238961	27238961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXA13	NM_000522	exon1	c.A736G	p.M246V	CAGGCATGGGCTG	.	83	36	74	0	.	658	C	27238961	T	C	27238961	3	2	194	1	0	0	0	0	1	0	0	0	7291	1464	51	2	438	2	HOXA13	7	27238961	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	97046	27238961	131899702	652	24808											
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27833956	27833956	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAX1BP1	NM_006024	exon11	c.T1425C	p.N475N	TAATAATGTCTTC	.	221	94	224	0	.	153	C	27833956	T	C	27833956	2	2	194	1	0	0	0	0	0	0	0	1	15591	1461	51	2		2	TAX1BP1	7	27833956	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	594995	27833956	131304707	653	24809											
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	29103852	29103852	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CPVL	NM_019029	exon12	c.964-2A>T	.	GGTTCCTGGCAGA	.	72	30	65	0	.	92	A	29103852	T	A	29103852	5	1	194	1	0	0	0	0	0	0	1	0	3835	1594	55	4	480	4	CPVL	7	29103852	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1269896	29103852	130034811	654	24810											
WIPF3	644150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29915478	29915478	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WIPF3	NM_001080529	exon3	c.A123C	p.A41A	AAGGGCAGATCCG	.	168	69	251	0	.	69	C	29915478	A	C	29915478	2	2	194	1	0	0	0	0	0	0	0	1	17366	175	7	5		5	WIPF3	7	29915478	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	811626	29915478	129223185	655	24811											
CRHR2	1395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30739585	30739585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRHR2	NM_001202475	exon1	c.G65A	p.C22Y	AGGAGGCAGAGCA	.	39	17	63	0	.	524	T	30739585	C	T	30739585	3	4	194	1	0	0	0	0	1	0	0	0	3872	725	25	3		3	CRHR2	7	30739585	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	824107	30739585	128399078	656	24812											
PDE1C	5137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	32109959	32109959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE1C	NM_001191056	exon1	c.T47A	p.L16Q	TATTTCAGAGAGT	.	110	45	97	1	.	94	T	32109959	A	T	32109959	3	4	194	1	0	0	0	0	1	0	0	0	11635	188	7	4	1925	4	PDE1C	7	32109959	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1370374	32109959	127028704	657	24813											
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33976943	33976943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BMPER	NM_133468	exon4	c.T262C	p.S88P	GTGCTGTCCCGAG	.	60	24	106	0	.	92	C	33976943	T	C	33976943	3	2	194	1	0	0	0	0	1	0	0	0	1468	1667	58	2	272	2	BMPER	7	33976943	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1866984	33976943	125161720	658	24814											
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35053222	35053222	+	Silent	SNP	G	G	A	rs184995902		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPY19L1	NM_015283	exon4	c.C288T	p.P96P	GACAAGGGGGTAT	.	237	112	222	0	G|0.999;A|0.000	68	A	35053222	G	A	35053222	2	1	194	1	0	0	0	0	0	0	0	1	4740	1219	43	3		3	DPY19L1	7	35053222	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1076279	35053222	124085441	659	24815											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35733822	35733822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HERPUD2	NM_022373	exon2	c.A119T	p.H40L	GATAGATGCGTTT	.	59	33	73	0	.	93	A	35733822	T	A	35733822	3	1	194	1	0	0	0	0	1	0	0	0	7064	1464	51	4	1133	4	HERPUD2	7	35733822	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	680600	35733822	123404841	660	24816											
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36436005	36436005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANLN	NM_018685	exon2	c.A149T	p.Q50L	GTAACCAGCAGCC	.	143	69	187	0	.	517	T	36436005	A	T	36436005	3	4	194	1	0	0	0	0	1	0	0	0	694	188	7	4	155	4	ANLN	7	36436005	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	702183	36436005	122702658	661	24817											
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38500915	38500915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AMPH	NM_139316	exon11	c.G985T	p.V329F	CTGGAACAAAGTT	.	75	37	73	0	.	95	A	38500915	C	A	38500915	3	1	194	1	0	0	0	0	1	0	0	0	588	478	17	3	1146	3	AMPH	7	38500915	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2064910	38500915	120637748	662	24818											
MYO1G	64005	broad.mit.edu;mdanderson.org	37	7	45002572	45002572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO1G	NM_033054	exon21	c.A2897T	p.Q966L	CACCCCTGGCAGT	.	13	6	8	0	.	137	A	45002572	T	A	45002572	3	1	194	1	0	0	0	0	1	0	0	0	10074	1580	55	4	167	4	MYO1G	7	45002572	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6501657	45002572	114136091	663	24819											
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45632453	45632453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY1	NM_021116	exon2	c.G735T	p.Q245H	CCTGCAGGCCCGG	.	124	62	111	0	.	95	T	45632453	G	T	45632453	3	4	194	1	0	0	0	0	1	0	0	0	292	991	35	3	741	3	ADCY1	7	45632453	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	629881	45632453	113506210	664	24820											
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45717819	45717819	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY1	NM_021116	exon10	c.C1855T	p.L619L	CTCATCCTGGCTG	.	114	48	105	0	.	95	T	45717819	C	T	45717819	2	4	194	1	0	0	0	0	0	0	0	1	292	680	24	3		3	ADCY1	7	45717819	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	85366	45717819	113420844	665	24821											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47408179	47408179	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNS3	NM_022748	exon17	c.A2064T	p.P688P	CGAGCCTGGGGAG	.	38	13	57	0	.	94	A	47408179	T	A	47408179	2	1	194	1	0	0	0	0	0	0	0	1	16341	1567	55	4		4	TNS3	7	47408179	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1690360	47408179	111730484	666	24822											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47870899	47870899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L1	NM_138295	exon42	c.A6389C	p.Q2130P	CAAGGCTGAAGGG	.	118	50	125	0	.	145	G	47870899	T	G	47870899	3	3	194	1	0	0	0	0	1	0	0	0	11964	1580	55	5	2224	5	PKD1L1	7	47870899	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	462720	47870899	111267764	667	24823											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	47970705	47970705	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L1	NM_138295	exon6	c.A733T	p.R245X	ACCTTCTGGGAGA	.	48	22	52	0	.	145	A	47970705	T	A	47970705	4	1	194	1	0	0	0	0	0	1	0	0	11964	1588	55	4	8024	4	PKD1L1	7	47970705	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	99806	47970705	111167958	668	24824											
HUS1	3364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48008897	48008897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HUS1	NM_004507	exon6	c.G559T	p.D187Y	CTCCATCTAGGTT	.	40	16	42	0	.	1109	A	48008897	C	A	48008897	3	1	194	1	0	0	0	0	1	0	0	0	7459	913	32	3	295	3	HUS1	7	48008897	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	38192	48008897	111129766	669	24825											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48314790	48314790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon17	c.G5527T	p.V1843F	TGCAATGTCCATG	.	66	27	84	0	.	521	T	48314790	G	T	48314790	3	4	194	1	0	0	0	0	1	0	0	0	31	1377	48	3	5422	3	ABCA13	7	48314790	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	305893	48314790	110823873	670	24826											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48412076	48412076	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon33	c.T11115C	p.F3705F	AAGTTTTGTTAAT	.	53	21	48	0	.	521	C	48412076	T	C	48412076	2	2	194	1	0	0	0	0	0	0	0	1	31	1809	63	2		2	ABCA13	7	48412076	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	97286	48412076	110726587	671	24827											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48431709	48431709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon38	c.A11846T	p.K3949M	GGACCAAGAAGGA	.	126	53	127	0	.	521	T	48431709	A	T	48431709	3	4	194	1	0	0	0	0	1	0	0	0	31	72	3	4	11825	4	ABCA13	7	48431709	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	19633	48431709	110706954	672	24828											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48528889	48528889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon48	c.C13239A	p.N4413K	TCTAAACAACCTT	.	169	62	205	0	.	521	A	48528889	C	A	48528889	3	1	194	1	0	0	0	0	1	0	0	0	31	477	17	3	13258	3	ABCA13	7	48528889	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	97180	48528889	110609774	673	24829											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48559635	48559635	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon53	c.13798-2A>T	.	CTGTGCAGAATTT	.	39	10	62	0	.	521	T	48559635	A	T	48559635	5	4	194	1	0	0	0	0	0	0	1	0	31	202	7	4	13835	4	ABCA13	7	48559635	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	30746	48559635	110579028	674	24830											
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50450343	50450343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IKZF1	NM_006060	exon5	c.A527T	p.H176L	AATGCCACCTCTG	.	21	14	17	0	.	1242	T	50450343	A	T	50450343	3	4	194	1	0	0	0	0	1	0	0	0	7614	159	6	4	541	4	IKZF1	7	50450343	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1890708	50450343	108688320	675	24831											
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51095619	51095619	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COBL	NM_015198	exon10	c.A3174C	p.T1058T	GCTTTCTGTGCCA	.	138	66	174	0	.	95	G	51095619	T	G	51095619	2	3	194	1	0	0	0	0	0	0	0	1	3653	1567	55	5		5	COBL	7	51095619	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	645276	51095619	108043044	676	24832											
ZNF735	730291	ucsc.edu;mdanderson.org	37	7	63680540	63680540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001159524	exon4	c.C1111A	p.H371N	AAGGCACATAAGA	.	35	18	25	1	.	.	A	63680540	C	A	63680540	3	1	194	1	0	0	0	0	1	0	0	0	18121	478	17	3	1125	3	ZNF735	7	63680540	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	12584921	63680540	95458123	677	24833											
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70885934	70885934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR17	NM_022479	exon5	c.C805T	p.R269C	CGGAAGCGTGTGA	.	98	54	97	0	.	96	T	70885934	C	T	70885934	3	4	194	1	0	0	0	0	1	0	0	0	17261	768	27	1	823	1	WBSCR17	7	70885934	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7205394	70885934	88252729	678	24834											
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71036347	71036347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR17	NM_022479	exon6	c.T1040G	p.M347R	CTGGCATGGATGT	.	81	41	99	0	.	96	G	71036347	T	G	71036347	3	3	194	1	0	0	0	0	1	0	0	0	17261	1464	51	5	1062	5	WBSCR17	7	71036347	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	150413	71036347	88102316	679	24835											
WBSCR27	155368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73254767	73254767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR27	NM_152559	exon4	c.A365T	p.Q122L	GGCTCCTGGCCCA	.	83	37	111	0	.	90	A	73254767	T	A	73254767	3	1	194	1	0	0	0	0	1	0	0	0	17263	1580	55	4	384	4	WBSCR27	7	73254767	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2218420	73254767	85883896	680	24836											
GTF2IRD2	84163	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	74211994	74211994	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GTF2IRD2	NM_173537	exon16	c.T1857A	p.T619T	GGTGCCAGTGGAG	.	340	36	386	1	.	23	T	74211994	A	T	74211994	2	4	194	1	0	0	0	0	0	0	0	1	6869	175	7	4		4	GTF2IRD2	7	74211994	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	957227	74211994	84926669	681	24837											
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75192502	75192502	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIP1	NM_005338	exon10	c.A869T	p.Q290L	GGCAGCTGGGGGA	.	72	31	74	0	.	1085	A	75192502	T	A	75192502	3	1	194	1	0	0	0	0	1	0	0	0	7114	1580	55	4	2332	4	HIP1	7	75192502	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	980508	75192502	83946161	682	24838											
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77567113	77567113	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHTF2	NM_001127357	exon11	c.A1323T	p.A441A	GAAAGCAGACATG	.	276	119	289	0	.	23	T	77567113	A	T	77567113	2	4	194	1	0	0	0	0	0	0	0	1	11863	175	7	4		4	PHTF2	7	77567113	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2374611	77567113	81571550	683	24839											
SEMA3C	10512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	80457899	80457899	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3C	NM_006379	exon4	c.264+2T>C	.	AAACTTACACTCA	.	127	49	130	0	.	515	G	80457899	A	G	80457899	5	3	194	1	0	0	0	0	0	0	1	0	14026	405	14	2	2053	2	SEMA3C	7	80457899	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2890786	80457899	78680764	684	24840											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	82764680	82764680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCLO	NM_014510	exon3	c.T2186A	p.L729X	TTGGACAAAGAAT	.	90	36	103	0	.	29	T	82764680	A	T	82764680	4	4	194	1	0	0	0	0	0	1	0	0	11583	131	5	4	13351	4	PCLO	7	82764680	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2306781	82764680	76373983	685	24841											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764790	82764790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCLO	NM_014510	exon3	c.G2076T	p.Q692H	GAGATCCTGTTTT	.	95	45	114	0	.	29	A	82764790	C	A	82764790	3	1	194	1	0	0	0	0	1	0	0	0	11583	680	24	3	13461	3	PCLO	7	82764790	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	110	82764790	76373873	686	24842											
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86571334	86571334	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1324L	NM_001142749	exon5	c.T741C	p.S247S	ACTTACAGAATGA	.	85	34	106	0	.	97	G	86571334	A	G	86571334	2	3	194	1	0	0	0	0	0	0	0	1	8224	202	7	2		2	KIAA1324L	7	86571334	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3806544	86571334	72567329	687	24843											
ZNF804B	219578	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	88965401	88965401	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF804B	NM_181646	exon4	c.A3105T	p.T1035T	AGTAACAGAGTCT	.	116	60	139	1	.	101	T	88965401	A	T	88965401	2	4	194	1	0	0	0	0	0	0	0	1	18168	175	7	4		4	ZNF804B	7	88965401	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2394067	88965401	70173262	688	24844											
C7orf63	79846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89917620	89917620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C7orf63	NM_001039706	exon15	c.G1729T	p.G577C	CAGAGTGGCTTAG	.	94	34	116	0	.	91	T	89917620	G	T	89917620	3	4	194	1	0	0	0	0	1	0	0	0	2409	1348	47	3	1787	3	C7orf63	7	89917620	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	952219	89917620	69221043	689	24845											
C7orf63	79846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89936396	89936396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C7orf63	NM_001039706	exon20	c.A2447G	p.Q816R	ATGAACAAAAAGT	.	135	54	133	0	.	91	G	89936396	A	G	89936396	3	3	194	1	0	0	0	0	1	0	0	0	2409	130	5	2	2525	2	C7orf63	7	89936396	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	18776	89936396	69202267	690	24846											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91724335	91724335	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP9	NM_005751	exon40	c.9579-2A>T	.	TGACTTAGGTTGG	.	60	29	85	0	.	755	T	91724335	A	T	91724335	5	4	194	1	0	0	0	0	0	0	1	0	459	434	15	4	9735	4	AKAP9	7	91724335	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1787939	91724335	67414328	691	24847											
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92763730	92763730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD9L	NM_152703	exon5	c.A1555G	p.R519G	TTTCTCTCTGCCA	.	55	25	65	0	.	94	C	92763730	T	C	92763730	3	2	194	1	0	0	0	0	1	0	0	0	13827	1559	54	2	3203	2	SAMD9L	7	92763730	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1039395	92763730	66374933	692	24848											
PON3	5446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95023973	95023973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PON3	NM_000940	exon2	c.A128T	p.H43L	ATAAGGTGGCAGT	.	81	44	109	0	.	91	A	95023973	T	A	95023973	3	1	194	1	0	0	0	0	1	0	0	0	12250	1696	59	4	968	4	PON3	7	95023973	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2260243	95023973	64114690	693	24849											
ARPC1A	10552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98946489	98946489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARPC1A	NM_006409	exon5	c.A407G	p.H136R	GCAAGCACATTAA	.	158	84	155	0	.	91	G	98946489	A	G	98946489	3	3	194	1	0	0	0	0	1	0	0	0	969	159	6	2	421	2	ARPC1A	7	98946489	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3922516	98946489	60192174	694	24850											
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99097607	99097607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF394	NM_032164	exon1	c.T110C	p.L37S	ACGGGCAAAAGTC	.	33	15	25	0	.	90	G	99097607	A	G	99097607	3	3	194	1	0	0	0	0	1	0	0	0	17877	131	5	2	1587	2	ZNF394	7	99097607	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	151118	99097607	60041056	695	24851											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100349862	100349862	+	RNA	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZAN	.	.	.	.	CCCACCATCTCCC	.	98	48	106	1	.	142	G	100349862	A	G	100349862	1	3	194	0	1	0	0	0	0	0	0	0	17510	217	8	2		2	ZAN	7	100349862	RNA	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1252255	100349862	58788801	696	24852											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100365533	100365533	+	RNA	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZAN	.	.	.	.	TCGTCCTCCTCTA	.	109	48	129	0	.	142	C	100365533	T	C	100365533	1	2	194	0	1	0	0	0	0	0	0	0	17510	1551	54	2		2	ZAN	7	100365533	RNA	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	15671	100365533	58773130	697	24853											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100674961	100674961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC17	NM_001040105	exon3	c.C264A	p.N88K	CACCAACCCTGAG	.	113	61	116	0	.	95	A	100674961	C	A	100674961	3	1	194	1	0	0	0	0	1	0	0	0	9974	506	18	3	274	3	MUC17	7	100674961	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	309428	100674961	58463702	698	24854											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100685847	100685847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC17	NM_001040105	exon3	c.C11150A	p.P3717H	CAACACCTTCTGT	.	29	12	32	0	.	95	A	100685847	C	A	100685847	3	1	194	1	0	0	0	0	1	0	0	0	9974	681	24	3	11160	3	MUC17	7	100685847	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	10886	100685847	58452816	699	24855											
SLC26A4	5172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107329628	107329628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A4	NM_000441	exon9	c.A1132C	p.T378P	GATTACACCATCG	.	68	24	90	1	.	96	C	107329628	A	C	107329628	3	2	194	1	0	0	0	0	1	0	0	0	14519	159	6	5	1162	5	SLC26A4	7	107329628	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6643781	107329628	51809035	700	24856											
TMEM168	64418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112407617	112407617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM168	NM_022484	exon5	c.A1729G	p.I577V	CTTCAATATCTAC	.	84	27	122	0	.	91	C	112407617	T	C	112407617	3	2	194	1	0	0	0	0	1	0	0	0	16080	1406	49	2	368	2	TMEM168	7	112407617	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5077989	112407617	46731046	701	24857											
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112724069	112724069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR85	NM_001146265	exon3	c.T708A	p.S236R	CTGGCCACTGGCT	.	55	23	72	0	.	91	T	112724069	A	T	112724069	3	4	194	1	0	0	0	0	1	0	0	0	6715	156	6	4	408	4	GPR85	7	112724069	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	316452	112724069	46414594	702	24858											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	113519017	113519017	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP1R3A	NM_002711	exon4	c.C2130A	p.C710X	TTCACAGCACACT	.	54	27	76	0	.	832	T	113519017	G	T	113519017	4	4	194	1	0	0	0	0	0	1	0	0	12371	963	34	3	1242	3	PPP1R3A	7	113519017	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	794948	113519017	45619646	703	24859											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113520088	113520088	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP1R3A	NM_002711	exon4	c.A1059T	p.A353A	CCCCTCTGCTTTA	.	137	63	135	0	.	832	A	113520088	T	A	113520088	2	1	194	1	0	0	0	0	0	0	0	1	12371	1567	55	4		4	PPP1R3A	7	113520088	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1071	113520088	45618575	704	24860											
NAA38	51691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117828430	117828430	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAA38	NM_016200	exon3	c.A171T	p.L57L	GGTACTAGGATTA	.	62	24	67	0	.	90	T	117828430	A	T	117828430	2	4	194	1	0	0	0	0	0	0	0	1	10124	407	15	4		4	NAA38	7	117828430	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4308342	117828430	41310233	705	24861											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121684539	121684539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRZ1	NM_002851	exon23	c.C6001A	p.L2001M	GAGGTGCTGGACA	.	81	38	70	0	.	699	A	121684539	C	A	121684539	3	1	194	1	0	0	0	0	1	0	0	0	12814	796	28	3	6091	3	PTPRZ1	7	121684539	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3856109	121684539	37454124	706	24862											
RNF148	378925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122342188	122342188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF148	NM_198085	exon1	c.A617G	p.Y206C	TCTAAGTAAAAGT	.	44	23	41	0	.	204	C	122342188	T	C	122342188	3	2	194	1	0	0	0	0	1	0	0	0	13449	1638	57	2	304	2	RNF148	7	122342188	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	657649	122342188	36796475	707	24863											
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123593884	123593884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPAM1	NM_153189	exon3	c.G260T	p.G87V	GGCAAGGTGTTAC	.	89	43	105	0	.	94	T	123593884	G	T	123593884	3	4	194	1	0	0	0	0	1	0	0	0	14986	1261	44	3	262	3	SPAM1	7	123593884	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1251696	123593884	35544779	708	24864											
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	127251726	127251726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAX4	NM_006193	exon8	c.C752A	p.S251Y	CCAGGGGACTGCT	.	22	12	27	0	.	227	T	127251726	G	T	127251726	3	4	194	1	0	0	0	0	1	0	0	0	11481	1174	41	3	287	3	PAX4	7	127251726	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3657842	127251726	31886937	709	24865											
LRRC4	64101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127670231	127670231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC4	NM_022143	exon2	c.C463T	p.R155C	TGTTGCGAAGCCA	.	41	17	61	0	.	154	A	127670231	G	A	127670231	3	1	194	1	0	0	0	0	1	0	0	0	8997	1058	37	1	1502	1	LRRC4	7	127670231	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	418505	127670231	31468432	710	24866											
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449649	128449649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC136	NM_022742	exon11	c.A1751T	p.E584V	AGGAAGAGCTGCA	.	118	60	149	0	.	24	T	128449649	A	T	128449649	3	4	194	1	0	0	0	0	1	0	0	0	2770	304	11	4	1793	4	CCDC136	7	128449649	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	779418	128449649	30689014	711	24867											
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128488063	128488063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLNC	NM_001127487	exon26	c.A4521T	p.P1507P	CACCCCAGCCACT	.	138	50	152	0	.	141	T	128488063	A	T	128488063	2	4	194	1	0	0	0	0	0	0	0	1	5935	175	7	4		4	FLNC	7	128488063	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	38414	128488063	30650600	712	24868											
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128494857	128494857	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLNC	NM_001458	exon42	c.T7026A	p.A2342A	GGAGGCTGGCGCT	.	56	24	66	0	.	141	A	128494857	T	A	128494857	2	1	194	1	0	0	0	0	0	0	0	1	5935	1567	55	4		4	FLNC	7	128494857	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6794	128494857	30643806	713	24869											
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134613624	134613624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CALD1	NM_033157	exon4	c.A191T	p.D64V	TGACCGACCAGGT	.	85	40	95	0	.	226	T	134613624	A	T	134613624	3	4	194	1	0	0	0	0	1	0	0	0	2581	275	10	4	254	4	CALD1	7	134613624	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6118767	134613624	24525039	714	24870											
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135378973	135378973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC13A4	NM_012450	exon10	c.T1030A	p.C344S	GAGAGCAGGTCTC	.	53	29	31	0	.	90	T	135378973	A	T	135378973	3	4	194	1	0	0	0	0	1	0	0	0	14394	188	7	4	878	4	SLC13A4	7	135378973	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	765349	135378973	23759690	715	24871											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136700927	136700927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHRM2	NM_001006632	exon3	c.T1315A	p.C439S	CCTGCCTGCTATG	.	148	63	163	0	.	94	A	136700927	T	A	136700927	3	1	194	1	0	0	0	0	1	0	0	0	3377	1580	55	4	1317	4	CHRM2	7	136700927	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1321954	136700927	22437736	716	24872											
DGKI	9162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137170144	137170144	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DGKI	NM_004717	exon24	c.T2403A	p.S801S	GGAGCCAGAAGAA	.	190	97	237	0	.	228	T	137170144	A	T	137170144	2	4	194	1	0	0	0	0	0	0	0	1	4471	175	7	4		4	DGKI	7	137170144	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	469217	137170144	21968519	717	24873											
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138749665	138749665	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZC3HAV1	NM_024625	exon8	c.A1953G	p.P651P	CTGAAATGGCACA	.	72	36	58	0	.	91	C	138749665	T	C	138749665	2	2	194	1	0	0	0	0	0	0	0	1	17572	1451	51	2		2	ZC3HAV1	7	138749665	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1579521	138749665	20388998	718	24874											
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140301960	140301961	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.V80L	TCTCCACCGTAGA	.	159	66	207	0	.	.	AA	140301961	CC	AA	140301960	3	1	194	1	0	0	0	0	1	0	0	0	4429	507	18	3	2863	3	DENND2A	7	140301960	Missense_Mutation	DNP	CC	TCGA-UB-A7MB-01A-11D-A33Q-10	1552295	140301960	18836703	719	24875											
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142612494	142612494	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPV5	NM_019841	exon10	c.G1269T	p.G423G	GAATGGCCCCCCA	.	188	83	264	0	.	177	A	142612494	C	A	142612494	2	1	194	1	0	0	0	0	0	0	0	1	16596	726	26	3		3	TRPV5	7	142612494	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2310534	142612494	16526169	720	24876											
FAM131B	9715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143054107	143054107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM131B	NM_001031690	exon7	c.G619T	p.A207S	CTTGAGCCAGGGC	.	99	44	132	0	.	90	A	143054107	C	A	143054107	3	1	194	1	0	0	0	0	1	0	0	0	5440	739	26	3	467	3	FAM131B	7	143054107	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	441613	143054107	16084556	721	24877											
OR2A1	346528	broad.mit.edu;bcgsc.ca	37	7	144015436	144015436	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2A1	NM_001005287	exon1	c.C219T	p.T73T	CTACACCCGCAAC	.	221	46	251	0	.	2	T	144015436	C	T	144015436	2	4	194	1	0	0	0	0	0	0	0	1	10974	610	22	3		3	OR2A1	7	144015436	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	961329	144015436	15123227	722	24878											
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149420891	149420891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRBA1	.	.	.	.	AGCTCCCCGAGGC	.	102	45	153	0	.	91	A	149420891	C	A	149420891	3	1	194	1	0	0	0	0	1	0	0	0	8439	623	22	3	865	3	KRBA1	7	149420891	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5405455	149420891	9717772	723	24879											
GIMAP4	55303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150269617	150269617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GIMAP4	NM_018326	exon3	c.C459A	p.F153L	CATATTCACCCGG	.	88	29	115	1	.	91	A	150269617	C	A	150269617	3	1	194	1	0	0	0	0	1	0	0	0	6381	825	29	3	465	3	GIMAP4	7	150269617	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	848726	150269617	8869046	724	24880											
DNAJB6	10049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	157160147	157160147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJB6	NM_058246	exon5	c.G316T	p.G106X	TTTGGTGGAAGGG	.	59	29	75	0	.	93	T	157160147	G	T	157160147	4	4	194	1	0	0	0	0	0	1	0	0	4624	1349	47	3	330	3	DNAJB6	7	157160147	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	6890530	157160147	1978516	725	24881											
VIPR2	7434	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	158823467	158823467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIPR2	NM_003382	exon13	c.T1157A	p.L386Q	CGCTTCAGCTCGC	.	31	10	57	1	.	91	T	158823467	A	T	158823467	3	4	194	1	0	0	0	0	1	0	0	0	17167	188	7	4	163	4	VIPR2	7	158823467	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1663320	158823467	315196	726	24882											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2823327	2823327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon59	c.A9250T	p.R3084W	TCCACCTGCCGTC	.	61	43	134	0	.	86	A	2823327	T	A	2823327	3	1	194	1	0	0	0	0	1	0	0	0	3944	1579	55	4	1492	4	CSMD1	8	2823327	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		2823327	143540695	727	24883											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2944651	2944651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon49	c.A7442T	p.Y2481F	CACTGGTACATGC	.	17	14	64	0	.	86	A	2944651	T	A	2944651	3	1	194	1	0	0	0	0	1	0	0	0	3944	1638	57	4	3340	4	CSMD1	8	2944651	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	121324	2944651	143419371	728	24884											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2964161	2964161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon46	c.G6838T	p.D2280Y	CAAAATCTCCTAG	.	49	38	121	0	.	86	A	2964161	C	A	2964161	3	1	194	1	0	0	0	0	1	0	0	0	3944	913	32	3	3956	3	CSMD1	8	2964161	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	19510	2964161	143399861	729	24885											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216815	3216815	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon21	c.C3163A	p.R1055R	TTCTTCGGCTGAA	.	59	48	110	0	.	86	T	3216815	G	T	3216815	2	4	194	1	0	0	0	0	0	0	0	1	3944	1124	39	1		1	CSMD1	8	3216815	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	252654	3216815	143147207	730	24886											
TUSC3	7991	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	15480679	15480679	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUSC3	NM_178234	exon2	c.A229T	p.I77L	AAATTTATAAAGG	.	54	44	102	1	.	516	T	15480679	A	T	15480679	3	4	194	1	0	0	0	0	1	0	0	0	16775	449	16	4	235	4	TUSC3	8	15480679	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	12263864	15480679	130883343	731	24887											
LZTS1	11178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20110758	20110758	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LZTS1	NM_021020	exon2	c.G684A	p.K228K	CAGAGCCTTCAGG	.	15	13	46	1	.	91	T	20110758	C	T	20110758	2	4	194	1	0	0	0	0	0	0	0	1	9138	680	24	3		3	LZTS1	8	20110758	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	4630079	20110758	126253264	732	24888											
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22476767	22476767	+	Missense_Mutation	SNP	C	C	G	rs201420827	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1967	NM_021174	exon20	c.C2626G	p.R876G	ACCGCCCGGACGG	.	28	11	58	0	C|0.999;T|0.000	92	G	22476767	C	G	22476767	3	3	194	1	0	0	0	0	1	0	0	0	8265	643	23	4	2700	4	KIAA1967	8	22476767	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2366009	22476767	123887255	733	24889											
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24346837	24346837	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM7	NM_003817	exon12	c.C1257T	p.G419G	CTGTGGCCCTGCT	.	32	24	53	0	.	230	T	24346837	C	T	24346837	2	4	194	1	0	0	0	0	0	0	0	1	251	726	26	3		3	ADAM7	8	24346837	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1870070	24346837	122017185	734	24890											
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28206270	28206270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF395	NM_018660	exon10	c.G1508A	p.R503Q	TTCCACCGGCAGG	.	24	24	91	0	.	90	T	28206270	C	T	28206270	3	4	194	1	0	0	0	0	1	0	0	0	17878	652	23	1	37	1	ZNF395	8	28206270	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3859433	28206270	118157752	735	24891											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35631946	35631946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC5D	NM_080872	exon16	c.G2608T	p.A870S	CCCAATGCCAAAG	.	58	47	103	0	.	96	T	35631946	G	T	35631946	3	4	194	1	0	0	0	0	1	0	0	0	16992	1319	46	3	2670	3	UNC5D	8	35631946	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	7425676	35631946	110732076	736	24892											
IDO1	3620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39785506	39785506	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IDO1	NM_002164	exon10	c.T1014A	p.A338A	GAAAGCTCTGGTC	.	95	48	140	0	.	227	A	39785506	T	A	39785506	2	1	194	1	0	0	0	0	0	0	0	1	7501	1538	54	4		4	IDO1	8	39785506	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4153560	39785506	106578516	737	24893											
C8orf4	56892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	40011185	40011185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C8orf4	NM_020130	exon1	c.A134C	p.Q45P	CAGACCAAGAATC	.	70	39	102	0	.	69	C	40011185	A	C	40011185	3	2	194	1	0	0	0	0	1	0	0	0	2425	130	5	5	136	5	C8orf4	8	40011185	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	225679	40011185	106352837	738	24894											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	41519015	41519015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK1	NM_000037	exon42	c.A5612T	p.K1871M	GCCCGCTTCACTA	.	44	16	44	0	.	716	A	41519015	T	A	41519015	3	1	194	1	0	0	0	0	1	0	0	0	620	1609	56	4	65	4	ANK1	8	41519015	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1507830	41519015	104845007	739	24895											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48794060	48794060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	PRKDC,NS,carcinoma,0	PRKDC	.	.	.	.	TTGTATTAAAAGA	.	151	63	201	0	.	1515	C	48794060	T	C	48794060	3	2	194	1	0	0	0	0	1	0	0	0	12521	1754	61	2	7598	2	PRKDC	8	48794060	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7275045	48794060	97569962	740	24896											
MOS	4342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57026368	57026368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOS	NM_005372	exon1	c.G174T	p.E58D	CACCTGCTCCCAG	.	52	28	66	0	.	1403	A	57026368	C	A	57026368	3	1	194	1	0	0	0	0	1	0	0	0	9712	796	28	3	869	3	MOS	8	57026368	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	8232308	57026368	89337654	741	24897											
PLAG1	5324	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	57079715	57079715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLAG1	NM_001114634	exon4	c.G590A	p.R197Q	TCCTTTCGGGTGT	.	25	4	38	0	.	1107	T	57079715	C	T	57079715	3	4	194	1	0	0	0	0	1	0	0	0	12018	884	31	1	916	1	PLAG1	8	57079715	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	53347	57079715	89284307	742	24898											
NSMAF	8439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59498516	59498516	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NSMAF	NM_001144772	exon29	c.T2583C	p.N861N	AATGACATTAAGA	.	64	21	77	0	.	91	G	59498516	A	G	59498516	2	3	194	1	0	0	0	0	0	0	0	1	10674	214	8	2		2	NSMAF	8	59498516	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2418801	59498516	86865506	743	24899											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	72983964	72983964	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPA1	NM_007332	exon2	c.A250T	p.R84X	AATCTCTGGTGAT	.	69	27	73	0	.	230	A	72983964	T	A	72983964	4	1	194	1	0	0	0	0	0	1	0	0	16574	1588	55	4	3213	4	TRPA1	8	72983964	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	13485448	72983964	73380058	744	24900											
RDH10	157506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74233273	74233273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RDH10	NM_172037	exon4	c.A731G	p.Y244C	GCCCTTATCTTGT	.	46	18	79	0	.	514	G	74233273	A	G	74233273	3	3	194	1	0	0	0	0	1	0	0	0	13189	449	16	2	745	2	RDH10	8	74233273	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1249309	74233273	72130749	745	24901											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87229922	87229922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC7A13	NM_138817	exon3	c.A956T	p.Q319L	CCCTCTTGGCTTG	.	116	55	134	0	.	90	A	87229922	T	A	87229922	3	1	194	1	0	0	0	0	1	0	0	0	14695	1812	63	4	464	4	SLC7A13	8	87229922	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	12996649	87229922	59134100	746	24902											
CNBD1	168975	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87899824	87899824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBD1	NM_173538	exon2	c.T143A	p.I48N	GCCACATTAGAGG	.	284	124	346	2	.	3	A	87899824	T	A	87899824	3	1	194	1	0	0	0	0	1	0	0	0	3591	1493	52	4	149	4	CNBD1	8	87899824	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	669902	87899824	58464198	747	24903											
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88365947	88365947	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBD1	NM_173538	exon10	c.T1236G	p.P412P	AGTTCCTTTCACG	.	451	189	516	0	.	3	G	88365947	T	G	88365947	2	3	194	1	0	0	0	0	0	0	0	1	3591	1596	56	5		5	CNBD1	8	88365947	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	466123	88365947	57998075	748	24904											
MMP16	4325	broad.mit.edu;bcgsc.ca	37	8	89068495	89068495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP16	NM_005941	exon8	c.T1234C	p.W412R	ACACCCAATATTT	.	99	7	103	0	.	231	G	89068495	A	G	89068495	3	3	194	1	0	0	0	0	1	0	0	0	9655	130	5	2	601	2	MMP16	8	89068495	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	702548	89068495	57295527	749	24905											
NBN	4683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90995076	90995076	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBN	NM_002485	exon2	c.A45G	p.P15P	TCTGTATGGTTCT	.	89	41	114	0	.	1395	C	90995076	T	C	90995076	2	2	194	1	0	0	0	0	0	0	0	1	10191	1451	51	2		2	NBN	8	90995076	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1926581	90995076	55368946	750	24906											
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92401631	92401631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A7	NM_134266	exon16	c.T1741A	p.F581I	TTTACCTTTTTTG	.	71	34	113	0	.	92	A	92401631	T	A	92401631	3	1	194	1	0	0	0	0	1	0	0	0	14522	1609	56	4	1799	4	SLC26A7	8	92401631	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1406555	92401631	53962391	751	24907											
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92983058	92983058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUNX1T1	NM_001198679	exon11	c.T1544A	p.V515E	CGCTTCACCTCAT	.	32	14	36	0	.	1196	T	92983058	A	T	92983058	3	4	194	1	0	0	0	0	1	0	0	0	13747	159	6	4	455	4	RUNX1T1	8	92983058	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	581427	92983058	53380964	752	24908											
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92998408	92998408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUNX1T1	NM_001198679	exon9	c.G1400A	p.S467N	CTGCTACTGCCGC	.	73	27	88	0	.	1196	T	92998408	C	T	92998408	3	4	194	1	0	0	0	0	1	0	0	0	13747	565	20	3	607	3	RUNX1T1	8	92998408	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	15350	92998408	53365614	753	24909											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	94798504	94798504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM67	NM_153704	exon13	c.G1342A	p.V448I	GATGCAGTAAGTG	.	55	20	51	0	.	92	A	94798504	G	A	94798504	3	1	194	1	0	0	0	0	1	0	0	0	16193	1029	36	3	1530	3	TMEM67	8	94798504	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1800096	94798504	51565518	754	24910											
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95501074	95501074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1429	NM_015496	exon24	c.C5299A	p.P1767T	CCCGAGGACTTGG	.	66	35	109	0	.	92	T	95501074	G	T	95501074	3	4	194	1	0	0	0	0	1	0	0	0	8231	1174	41	3	143	3	KIAA1429	8	95501074	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	702570	95501074	50862948	755	24911											
CCNE2	9134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95906153	95906153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCNE2	NM_057749	exon4	c.A131T	p.E44V	ACCTCCTCTCTTC	.	118	46	151	0	.	414	A	95906153	T	A	95906153	3	1	194	1	0	0	0	0	1	0	0	0	2921	1551	54	4	1119	4	CCNE2	8	95906153	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	405079	95906153	50457869	756	24912											
RGS22	26166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101075783	101075783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS22	NM_015668	exon8	c.A1213T	p.R405W	AAGTCCTATGAGA	.	79	38	98	1	.	140	A	101075783	T	A	101075783	3	1	194	1	0	0	0	0	1	0	0	0	13305	1521	53	4	2661	4	RGS22	8	101075783	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5169630	101075783	45288239	757	24913											
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101287279	101287279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF19A	NM_015435	exon4	c.A785T	p.Q262L	CAGGTCTGGTTGG	.	112	55	128	0	.	229	A	101287279	T	A	101287279	3	1	194	1	0	0	0	0	1	0	0	0	13470	1580	55	4	1763	4	RNF19A	8	101287279	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	211496	101287279	45076743	758	24914											
GRHL2	79977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	102611327	102611327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRHL2	NM_024915	exon8	c.A1046G	p.E349G	TTGAAGAGATTGC	.	71	29	69	0	.	93	G	102611327	A	G	102611327	3	3	194	1	0	0	0	0	1	0	0	0	6764	304	11	2	1076	2	GRHL2	8	102611327	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1324048	102611327	43752695	759	24915											
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104924293	104924293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RIMS2	NM_001100117	exon6	c.T1705G	p.W569G	GTAACCTGGCAAC	.	57	26	53	0	.	279	G	104924293	T	G	104924293	3	3	194	1	0	0	0	0	1	0	0	0	13368	1580	55	5	1853	5	RIMS2	8	104924293	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2312966	104924293	41439729	760	24916											
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	106813460	106813461	+	Missense_Mutation	DNP	CT	CT	AC	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.L384T	CAGGAGCTCCATG	.	106	48	137	0	.	.	AC	106813461	CT	AC	106813460	3	1	194	1	0	0	0	0	1	0	0	0	17655	797	28	3	1180	3	ZFPM2	8	106813460	Missense_Mutation	DNP	CT	TCGA-UB-A7MB-01A-11D-A33Q-10	1889167	106813460	39550562	761	24917											
ZFPM2	23414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814726	106814726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFPM2	NM_012082	exon8	c.A2416G	p.N806D	ACGATCAACAAGT	.	139	72	154	1	.	139	G	106814726	A	G	106814726	3	3	194	1	0	0	0	0	1	0	0	0	17655	130	5	2	2446	2	ZFPM2	8	106814726	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1266	106814726	39549296	762	24918											
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	107691475	107691475	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXR1	NM_001198532	exon3	c.A261G	p.G87G	AGATGGAAGACGA	.	137	60	184	0	.	68	G	107691475	A	G	107691475	2	3	194	1	0	0	0	0	0	0	0	1	11334	233	9	2		2	OXR1	8	107691475	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	876749	107691475	38672547	763	24919											
RSPO2	340419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109094862	109094862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RSPO2	NM_178565	exon2	c.A5G	p.Q2R	CGAAACTGCATCT	.	29	11	42	0	.	231	C	109094862	T	C	109094862	3	2	194	1	0	0	0	0	1	0	0	0	13710	1580	55	2	746	2	RSPO2	8	109094862	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1403387	109094862	37269160	764	24920											
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110413802	110413802	+	Missense_Mutation	SNP	T	T	G	rs201291395	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1L1	NM_177531	exon14	c.T1358G	p.L453R	TTCATCTGCAGAA	.	109	44	141	1	T|0.999;C|0.000	145	G	110413802	T	G	110413802	3	3	194	1	0	0	0	0	1	0	0	0	11972	1580	55	5	1412	5	PKHD1L1	8	110413802	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1318940	110413802	35950220	765	24921											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113237150	113237150	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD3	NM_198123	exon71	c.T10974A	p.P3658P	TGTTTTAGGTGCA	.	102	32	105	0	.	1132	T	113237150	A	T	113237150	2	4	194	1	0	0	0	0	0	0	0	1	3946	407	15	4		4	CSMD3	8	113237150	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2823348	113237150	33126872	766	24922											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113702110	113702110	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD3	NM_198123	exon14	c.A2142T	p.I714I	GATGGGTATGTTT	.	89	43	99	0	.	1132	A	113702110	T	A	113702110	2	1	194	1	0	0	0	0	0	0	0	1	3946	1628	57	4		4	CSMD3	8	113702110	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	464960	113702110	32661912	767	24923											
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119936998	119936998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF11B	NM_002546	exon5	c.T821A	p.I274N	AGGTCAATATCTG	.	58	31	80	0	.	651	T	119936998	A	T	119936998	3	4	194	1	0	0	0	0	1	0	0	0	16282	101	4	4	388	4	TNFRSF11B	8	119936998	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6234888	119936998	26427024	768	24924											
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	120594814	120594814	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ENPP2	NM_006209	exon19	c.T1728C	p.N576N	CCCATTATTAGGA	.	89	34	63	0	.	292	G	120594814	A	G	120594814	2	3	194	1	0	0	0	0	0	0	0	1	5130	446	16	2		2	ENPP2	8	120594814	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	657816	120594814	25769208	769	24925											
KLHL38	340359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124664565	124664565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL38	NM_001081675	exon1	c.T602C	p.M201T	CAAACCATGAGGG	.	80	36	88	0	.	68	G	124664565	A	G	124664565	3	3	194	1	0	0	0	0	1	0	0	0	8390	217	8	2	1155	2	KLHL38	8	124664565	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4069751	124664565	21699457	770	24926											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124987506	124987506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L6	NM_001039112	exon8	c.A643T	p.T215S	TTGAAGACCAGCC	.	216	95	323	0	.	100	T	124987506	A	T	124987506	3	4	194	1	0	0	0	0	1	0	0	0	5815	275	10	4	669	4	FER1L6	8	124987506	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	322941	124987506	21376516	771	24927											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124998413	124998413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L6	NM_001039112	exon12	c.A1516G	p.I506V	GTTTCTATTGGTA	.	60	19	72	0	.	100	G	124998413	A	G	124998413	3	3	194	1	0	0	0	0	1	0	0	0	5815	449	16	2	1558	2	FER1L6	8	124998413	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10907	124998413	21365609	772	24928											
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131130809	131130809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASAP1	NM_018482	exon19	c.A1720T	p.R574W	AATCCCTGGATTT	.	87	36	112	0	.	95	A	131130809	T	A	131130809	3	1	194	1	0	0	0	0	1	0	0	0	1010	1579	55	4	1717	4	ASAP1	8	131130809	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6132396	131130809	15233213	773	24929											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140898164	140898164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAPPC9	NM_031466	exon21	c.A3308C	p.Q1103P	ACGAGCTGGTTCA	.	208	101	257	1	.	228	G	140898164	T	G	140898164	3	3	194	1	0	0	0	0	1	0	0	0	16462	1580	55	5	444	5	TRAPPC9	8	140898164	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	9767355	140898164	5465858	774	24930											
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142185462	142185462	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND3	NM_014957	exon14	c.A2199T	p.L733L	AAACCTAGGCGTT	.	76	32	102	0	.	91	T	142185462	A	T	142185462	2	4	194	1	0	0	0	0	0	0	0	1	4432	407	15	4		4	DENND3	8	142185462	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1287298	142185462	4178560	775	24931											
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142188201	142188201	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND3	NM_014957	exon16	c.C2502A	p.V834V	CAACGTCTTGCTG	.	38	25	51	0	.	91	A	142188201	C	A	142188201	2	1	194	1	0	0	0	0	0	0	0	1	4432	900	32	3		3	DENND3	8	142188201	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2739	142188201	4175821	776	24932											
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143425368	143425368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TSNARE1	NM_145003	exon4	c.A704C	p.Q235P	AGGGCCTGGCAAG	.	71	26	79	0	.	90	G	143425368	T	G	143425368	3	3	194	1	0	0	0	0	1	0	0	0	16627	1580	55	5	877	5	TSNARE1	8	143425368	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1237167	143425368	2938654	777	24933											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144808647	144808647	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM83H	NM_198488	exon5	c.A2984T	p.Q995L	TCGGGTTGGCCGT	.	27	13	31	0	.	92	A	144808647	T	A	144808647	3	1	194	1	0	0	0	0	1	0	0	0	5640	1812	63	4	559	4	FAM83H	8	144808647	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1383279	144808647	1555375	778	24934											
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144996711	144996711	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEC	NM_201380	exon31	c.C7797A	p.L2599L	CTGTTGGAGCTTC	.	15	7	35	0	.	141	T	144996711	G	T	144996711	2	4	194	1	0	0	0	0	0	0	0	1	12052	1161	41	3		3	PLEC	8	144996711	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	188064	144996711	1367311	779	24935											
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6012662	6012662	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RANBP6	NM_012416	exon1	c.A2946T	p.S982S	TATTGCTGAGATA	.	77	8	171	0	.	229	A	6012662	T	A	6012662	2	1	194	1	0	0	0	0	0	0	0	1	13031	1567	55	4		4	RANBP6	9	6012662	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		6012662	135200769	780	24936											
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	7046860	7046860	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDM4C	NM_001146696	exon16	c.2326-2A>T	.	CCCCCCAGGAATG	.	29	27	90	0	.	228	T	7046860	A	T	7046860	5	4	194	1	0	0	0	0	0	0	1	0	8130	202	7	4	2386	4	KDM4C	9	7046860	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1034198	7046860	134166571	781	24937											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8486105	8486105	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRD	NM_002839	exon28	c.G2712A	p.G904G	CTCCTCCCCAAAG	.	115	59	108	0	.	912	T	8486105	C	T	8486105	2	4	194	1	0	0	0	0	0	0	0	1	12799	610	22	3		3	PTPRD	9	8486105	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1439245	8486105	132727326	782	24938											
CER1	9350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14722169	14722169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CER1	NM_005454	exon1	c.A502T	p.S168C	CCTGGCTGAAGGG	.	67	31	72	0	.	226	A	14722169	T	A	14722169	3	1	194	1	0	0	0	0	1	0	0	0	3265	1580	55	4	309	4	CER1	9	14722169	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6236064	14722169	126491262	783	24939											
FREM1	158326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14808126	14808126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM1	NM_144966	exon18	c.A2900G	p.E967G	CCAATCTCGCCAC	.	112	82	105	1	.	138	C	14808126	T	C	14808126	3	2	194	1	0	0	0	0	1	0	0	0	6044	1551	54	2	3773	2	FREM1	9	14808126	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	85957	14808126	126405305	784	24940											
SNAPC3	6619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15447091	15447091	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNAPC3	NM_001039697	exon5	c.583-2A>T	.	ACTTTTAGCACAA	.	132	57	121	0	.	186	T	15447091	A	T	15447091	5	4	194	1	0	0	0	0	0	0	1	0	14836	434	15	4	599	4	SNAPC3	9	15447091	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	638965	15447091	125766340	785	24941											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16437127	16437127	+	Silent	SNP	G	G	T	rs183551262	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BNC2	NM_017637	exon6	c.C1065A	p.P355P	AAGGCTGGGTTCC	.	110	38	110	0	G|0.999;A|0.000	92	T	16437127	G	T	16437127	2	4	194	1	0	0	0	0	0	0	0	1	1475	1335	47	3		3	BNC2	9	16437127	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	990036	16437127	124776304	786	24942											
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17793437	17793437	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3GL2	NM_003026	exon8	c.T801A	p.T267T	TCCAACTGGAGAC	.	121	61	135	0	.	91	A	17793437	T	A	17793437	2	1	194	1	0	0	0	0	0	0	0	1	14251	1567	55	4		4	SH3GL2	9	17793437	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1356310	17793437	123419994	787	24943											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18892464	18892464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTSL1	NM_001040272	exon26	c.A4721G	p.K1574R	GTCAAAAGCTGAA	.	66	27	61	0	.	230	G	18892464	A	G	18892464	3	3	194	1	0	0	0	0	1	0	0	0	274	72	3	2	4827	2	ADAMTSL1	9	18892464	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1099027	18892464	122320967	788	24944											
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20413886	20413886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLLT3	NM_004529	exon5	c.T958A	p.C320S	CAGAACAAGTGAG	.	103	47	126	0	.	660	T	20413886	A	T	20413886	3	4	194	1	0	0	0	0	1	0	0	0	9628	130	5	4	776	4	MLLT3	9	20413886	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1521422	20413886	120799545	789	24945											
IFNB1	3456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21077590	21077590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNB1	NM_002176	exon1	c.A279C	p.Q93H	TGAATCTTGTCTG	.	70	14	63	1	.	155	G	21077590	T	G	21077590	3	3	194	1	0	0	0	0	1	0	0	0	7546	1606	56	5	288	5	IFNB1	9	21077590	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	663704	21077590	120135841	790	24946											
IFNA16	3449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21217242	21217242	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA16	NM_002173	exon1	c.T63C	p.S21S	GCCCAGAGAACAG	.	233	61	192	0	.	91	G	21217242	A	G	21217242	2	3	194	1	0	0	0	0	0	0	0	1	7535	291	11	2		2	IFNA16	9	21217242	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	139652	21217242	119996189	791	24947											
IFNA5	3442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21305011	21305011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA5	NM_002169	exon1	c.A245C	p.E82A	ATCATCTCATGGA	.	95	65	95	0	.	91	G	21305011	T	G	21305011	3	3	194	1	0	0	0	0	1	0	0	0	7540	1551	54	5	328	5	IFNA5	9	21305011	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	87769	21305011	119908420	792	24948											
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409216	21409216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA8	NM_002170	exon1	c.T41A	p.L14H	TGGTGCTCAGCTA	.	70	34	47	0	.	90	A	21409216	T	A	21409216	3	1	194	1	0	0	0	0	1	0	0	0	7543	1551	54	4	43	4	IFNA8	9	21409216	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	104205	21409216	119804215	793	24949											
UBAP2	55833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33953474	33953474	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBAP2	NM_018449	exon13	c.867-2A>G	.	CAATGCTAAGCAG	.	91	46	104	0	.	94	C	33953474	T	C	33953474	5	2	194	1	0	0	0	0	0	0	1	0	16834	1536	53	2	2566	2	UBAP2	9	33953474	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	12544258	33953474	107259957	794	24950											
CA9	768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35674105	35674105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CA9	NM_001216	exon1	c.G149T	p.G50V	CCTTGGGAGGAGG	.	75	38	58	0	.	95	T	35674105	G	T	35674105	3	4	194	1	0	0	0	0	1	0	0	0	2524	1174	41	3	151	3	CA9	9	35674105	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1720631	35674105	105539326	795	24951											
TPM2	7169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35684745	35684745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPM2	NM_003289	exon6	c.A623G	p.E208G	TGGGCCTCCAGGG	.	101	35	128	2	.	515	C	35684745	T	C	35684745	3	2	194	1	0	0	0	0	1	0	0	0	16403	1551	54	2	334	2	TPM2	9	35684745	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	10640	35684745	105528686	796	24952											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35724956	35724956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLN1	NM_006289	exon4	c.G229T	p.D77Y	TAGTGTCCTGTTA	.	62	21	86	0	.	609	A	35724956	C	A	35724956	3	1	194	1	0	0	0	0	1	0	0	0	15944	869	30	3	7612	3	TLN1	9	35724956	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	40211	35724956	105488475	797	24953											
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35752015	35752015	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGP1	NM_001080496	exon8	c.A825G	p.A275A	TGGGGCAGGGGGT	.	92	34	112	0	.	23	G	35752015	A	G	35752015	2	3	194	1	0	0	0	0	0	0	0	1	13284	175	7	2		2	RGP1	9	35752015	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	27059	35752015	105461416	798	24954											
OR2S2	56656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35957519	35957519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2S2	NM_019897	exon1	c.A577G	p.I193V	TGGAAATGTCAGC	.	79	45	86	0	.	68	C	35957519	T	C	35957519	3	2	194	1	0	0	0	0	1	0	0	0	11015	1464	51	2	386	2	OR2S2	9	35957519	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	205504	35957519	105255912	799	24955											
RECK	8434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36122893	36122893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RECK	NM_021111	exon21	c.C2767T	p.H923Y	GCGTCCCATGTCC	.	128	51	144	1	.	93	T	36122893	C	T	36122893	3	4	194	1	0	0	0	0	1	0	0	0	13200	594	21	3	2849	3	RECK	9	36122893	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	165374	36122893	105090538	800	24956											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77418778	77418778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPM6	NM_017662	exon15	c.A1663G	p.R555G	CATTTCTATTTCC	.	95	31	71	0	.	335	C	77418778	T	C	77418778	3	2	194	1	0	0	0	0	1	0	0	0	16587	1530	53	2	4505	2	TRPM6	9	77418778	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	41295885	77418778	63794653	801	24957											
PCSK5	5125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	78973635	78973635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCSK5	NM_001190482	exon37	c.A5380T	p.S1794C	TATAAGAGCAGCT	.	180	53	163	1	.	93	T	78973635	A	T	78973635	3	4	194	1	0	0	0	0	1	0	0	0	11603	319	11	4		4	PCSK5	9	78973635	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1554857	78973635	62239796	802	24958											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79324425	79324425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRUNE2	NM_015225	exon8	c.T2765C	p.F922S	TCCTCAAAAAGGT	.	170	41	138	0	.	157	G	79324425	A	G	79324425	3	3	194	1	0	0	0	0	1	0	0	0	12641	14	1	2	6549	2	PRUNE2	9	79324425	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	350790	79324425	61889006	803	24959											
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86495242	86495242	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF27	NM_017576	exon11	c.A2613T	p.A871A	AATTACTGCATCC	.	66	18	72	0	.	523	A	86495242	T	A	86495242	2	1	194	1	0	0	0	0	0	0	0	1	8296	1567	55	4		4	KIF27	9	86495242	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7170817	86495242	54718189	804	24960											
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87325598	87325598	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NTRK2	NM_001018065	exon6	c.A475T	p.I159F	ATGTGGATCAAGA	.	172	157	119	0	.	1404	T	87325598	A	T	87325598	3	4	194	1	0	0	0	0	1	0	0	0	10707	333	12	4	493	4	NTRK2	9	87325598	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	830356	87325598	53887833	805	24961											
C9orf153	389766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88842778	88842778	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf153	NM_001276368	exon4	c.T234A	p.P78P	GATAACAGGTTGG	.	99	43	97	0	.	90	T	88842778	A	T	88842778	2	4	194	1	0	0	0	0	0	0	0	1	2464	175	7	4		4	C9orf153	9	88842778	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1517180	88842778	52370653	806	24962											
SEMA4D	10507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	92002518	92002518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA4D	NM_006378	exon14	c.C1113G	p.I371M	GCTGTCGATGCAC	.	83	10	94	0	.	92	C	92002518	G	C	92002518	3	2	194	1	0	0	0	0	1	0	0	0	14034	1048	37	4	2065	4	SEMA4D	9	92002518	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3159740	92002518	49210913	807	24963											
ROR2	4920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94488970	94488970	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROR2	NM_004560	exon8	c.A1239T	p.A413A	TGGAATTGCGATG	.	57	25	71	0	.	1471	A	94488970	T	A	94488970	2	1	194	1	0	0	0	0	0	0	0	1	13527	1799	63	4		4	ROR2	9	94488970	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2486452	94488970	46724461	808	24964											
ZNF484	83744	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95618117	95618117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF484	NM_001261458	exon3	c.G217C	p.E73Q	GGATCTCACCATC	.	84	38	98	1	.	90	G	95618117	C	G	95618117	3	3	194	1	0	0	0	0	1	0	0	0	17934	835	29	4	2355	4	ZNF484	9	95618117	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1129147	95618117	45595314	809	24965											
WNK2	65268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	96021605	96021605	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WNK2	NM_006648	exon11	c.T2775A	p.P925P	CGTCCCTCCTTCC	.	117	51	135	1	.	765	A	96021605	T	A	96021605	2	1	194	1	0	0	0	0	0	0	0	1	17375	1538	54	4		4	WNK2	9	96021605	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	403488	96021605	45191826	810	24966											
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96051121	96051121	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WNK2	NM_006648	exon19	c.T4085A	p.L1362Q	GCTTTCTAGCCAG	.	161	58	199	0	.	765	A	96051121	T	A	96051121	3	1	194	1	0	0	0	0	1	0	0	0	17375	1522	53	4	4159	4	WNK2	9	96051121	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	29516	96051121	45162310	811	24967											
C9orf3	84909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97522798	97522798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf3	NM_001193331	exon2	c.A733T	p.R245W	GCTATCAGGATAT	.	60	22	54	0	.	91	T	97522798	A	T	97522798	3	4	194	1	0	0	0	0	1	0	0	0	2477	179	7	4	735	4	C9orf3	9	97522798	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1471677	97522798	43690633	812	24968											
HABP4	22927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99250387	99250387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HABP4	NM_014282	exon7	c.A1016G	p.Y339C	ATGACTATGAGGA	.	67	22	76	0	.	91	G	99250387	A	G	99250387	3	3	194	1	0	0	0	0	1	0	0	0	6939	449	16	2	1042	2	HABP4	9	99250387	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1727589	99250387	41963044	813	24969											
CDC14B	8555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	99286009	99286009	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC14B	NM_001077181	exon11	c.836-2A>G	.	GCCAGCTAGGAAA	.	153	134	188	0	.	228	C	99286009	T	C	99286009	5	2	194	1	0	0	0	0	0	0	1	0	3057	1536	53	2	571	2	CDC14B	9	99286009	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	35622	99286009	41927422	814	24970											
HEMGN	55363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	100698475	100698475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEMGN	NM_197978	exon2	c.G151T	p.E51X	ATGTTTCCTTTTC	.	67	21	151	0	.	91	A	100698475	C	A	100698475	4	1	194	1	0	0	0	0	0	1	0	0	7050	864	30	3	1315	3	HEMGN	9	100698475	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1412466	100698475	40514956	815	24971											
NR4A3	8013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	102590707	102590707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NR4A3	NM_173200	exon4	c.T416A	p.L139Q	AGGTGCTGCCCAG	.	19	14	37	0	.	186	A	102590707	T	A	102590707	3	1	194	1	0	0	0	0	1	0	0	0	10634	1580	55	4	422	4	NR4A3	9	102590707	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1892232	102590707	38622724	816	24972											
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767379	105767379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.G466T	p.D156Y	AAGCTAGATGCAA	.	71	59	135	0	.	91	T	105767379	G	T	105767379	3	4	194	1	0	0	0	0	1	0	0	0	4142	942	33	3	484	3	CYLC2	9	105767379	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3176672	105767379	35446052	817	24973	165	2									
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	105767380	105767380	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.A467C	p.D156A	AGCTAGATGCAAA	.	71	9	134	0	.	91	C	105767380	A	C	105767380	3	2	194	1	0	0	0	0	1	0	0	0	4142	333	12	5	485	5	CYLC2	9	105767380	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1	105767380	35446051	818	24974	165	2									
CYLC2	1539	broad.mit.edu;bcgsc.ca	37	9	105767509	105767509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.G596A	p.G199D	ACAAAGGCAAAGA	.	93	6	180	0	.	91	A	105767509	G	A	105767509	3	1	194	1	0	0	0	0	1	0	0	0	4142	1203	42	3	614	3	CYLC2	9	105767509	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	129	105767509	35445922	819	24975											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107620923	107620923	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA1	NM_005502	exon7	c.A600T	p.S200S	CTCTTCTGATTTT	.	81	70	139	0	.	1016	A	107620923	T	A	107620923	2	1	194	1	0	0	0	0	0	0	0	1	28	1567	55	4		4	ABCA1	9	107620923	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1853414	107620923	33592508	820	24976											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117106039	117106039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKNA	NM_030767	exon19	c.A3706G	p.N1236D	TGCCATTGCCTTT	.	63	44	113	0	.	94	C	117106039	T	C	117106039	3	2	194	1	0	0	0	0	1	0	0	0	463	1812	63	2	629	2	AKNA	9	117106039	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	9485116	117106039	24107392	821	24977											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117118383	117118383	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKNA	NM_030767	exon14	c.A2880T	p.A960A	CACAGATGCAGCA	.	30	21	75	0	.	94	A	117118383	T	A	117118383	2	1	194	1	0	0	0	0	0	0	0	1	463	1451	51	4		4	AKNA	9	117118383	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	12344	117118383	24095048	822	24978											
TLR4	7099	broad.mit.edu;ucsc.edu	37	9	120475741	120475741	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR4	NM_138554	exon3	c.A1335T	p.S445S	CCTATCACTCAGA	.	37	4	94	0	.	577	T	120475741	A	T	120475741	2	4	194	1	0	0	0	0	0	0	0	1	15950	146	6	4		4	TLR4	9	120475741	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3357358	120475741	20737690	823	24979											
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124522473	124522473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DAB2IP	NM_032552	exon6	c.A841C	p.K281Q	GTGGAGAAGTGGT	.	27	22	60	0	.	91	C	124522473	A	C	124522473	3	2	194	1	0	0	0	0	1	0	0	0	4219	247	9	5	863	5	DAB2IP	9	124522473	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4046732	124522473	16690958	824	24980											
OR1L3	26735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125437543	125437543	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1L3	NM_001005234	exon1	c.C135T	p.I45I	GCTCATCATCTTG	.	47	42	114	0	.	69	T	125437543	C	T	125437543	2	4	194	1	0	0	0	0	0	0	0	1	10964	816	29	3		3	OR1L3	9	125437543	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	915070	125437543	15775888	825	24981											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125782674	125782674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RABGAP1	NM_012197	exon13	c.A1730T	p.Q577L	TCTGGCAGCTGCT	.	27	23	59	0	.	500	T	125782674	A	T	125782674	3	4	194	1	0	0	0	0	1	0	0	0	12964	188	7	4	1776	4	RABGAP1	9	125782674	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	345131	125782674	15430757	826	24982											
LHX2	9355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	126794984	126794984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LHX2	NM_004789	exon5	c.T1219C	p.X407Q	CTTTTCTAATGAC	.	72	57	157	0	.	90	C	126794984	T	C	126794984	3	2	194	1	0	0	0	0	1	0	0	0	8771	1535	53	2	1237	2	LHX2	9	126794984	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1012310	126794984	14418447	827	24983											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	128124887	128124887	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GAPVD1	NM_015635	exon27	c.A4326G	p.A1442A	CTAGGCAAATCCA	.	30	23	62	0	.	93	G	128124887	A	G	128124887	2	3	194	1	0	0	0	0	0	0	0	1	6239	117	5	2		2	GAPVD1	9	128124887	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1329903	128124887	13088544	828	24984											
SH2D3C	10044	broad.mit.edu;ucsc.edu	37	9	130536280	130536280	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH2D3C	NM_170600	exon2	c.G504C	p.V168V	TGAGTGCACGTCC	.	32	4	80	0	.	228	G	130536280	C	G	130536280	2	3	194	1	0	0	0	0	0	0	0	1	14234	697	25	4		4	SH2D3C	9	130536280	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2411393	130536280	10677151	829	24985											
QRFP	347148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133768976	133768976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	QRFP	NM_198180	exon1	c.T250A	p.C84S	ATCTGCAGCCAGC	.	38	34	101	0	.	90	T	133768976	A	T	133768976	3	4	194	1	0	0	0	0	1	0	0	0	12877	188	7	4	163	4	QRFP	9	133768976	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3232696	133768976	7444455	830	24986											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135779040	135779040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TSC1	NM_000368	exon17	c.A2206G	p.M736V	TCACCATGGCAGC	.	46	38	78	0	.	1906	C	135779040	T	C	135779040	3	2	194	1	0	0	0	0	1	0	0	0	16602	1464	51	2	1316	2	TSC1	9	135779040	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2010064	135779040	5434391	831	24987											
C9orf96	169436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136270407	136270407	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf96	NM_153710	exon18	c.T1905C	p.S635S	CAGTAGTATGAAG	.	12	10	23	0	.	334	C	136270407	T	C	136270407	2	2	194	1	0	0	0	0	0	0	0	1	2508	1635	57	2		2	C9orf96	9	136270407	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	491367	136270407	4943024	832	24988											
TMEM8C	389827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136384125	136384125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM8C	NM_001080483	exon3	c.A270T	p.E90D	CTTGGGTTCGTCG	.	22	17	68	0	.	68	A	136384125	T	A	136384125	3	1	194	1	0	0	0	0	1	0	0	0	16213	1722	60	4	407	4	TMEM8C	9	136384125	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	113718	136384125	4829306	833	24989											
RXRA	6256	broad.mit.edu;bcgsc.ca	37	9	137293489	137293490	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.Q14M	TCCACCCAGGTGA	.	47	37	93	1	.	.	AT	137293490	CA	AT	137293489	3	1	194	1	0	0	0	0	1	0	0	0	13763	595	21	3	46	3	RXRA	9	137293489	Missense_Mutation	DNP	CA	TCGA-UB-A7MB-01A-11D-A33Q-10	909364	137293489	3919942	834	24990											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138656968	138656968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNT1	NM_020822	exon12	c.T1127A	p.L376Q	TGGTCCTGTGTGT	.	62	45	136	0	.	137	A	138656968	T	A	138656968	3	1	194	1	0	0	0	0	1	0	0	0	8091	1580	55	4	1173	4	KCNT1	9	138656968	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1363479	138656968	2556463	835	24991											
SLC34A3	142680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140127698	140127698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC34A3	NM_001177317	exon7	c.T598A	p.W200R	TTCAACTGGCTCA	.	26	22	59	0	.	90	A	140127698	T	A	140127698	3	1	194	1	0	0	0	0	1	0	0	0	14569	1580	55	4	620	4	SLC34A3	9	140127698	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1470730	140127698	1085733	836	24992											
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140695341	140695341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EHMT1	NM_024757	exon18	c.G2617T	p.G873C	GACGGAGGCTGGA	.	58	45	134	0	.	154	T	140695341	G	T	140695341	3	4	194	1	0	0	0	0	1	0	0	0	4983	1000	35	3	2736	3	EHMT1	9	140695341	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	567643	140695341	518090	837	24993											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	395294	395294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIP2C	NM_014974	exon25	c.A3086T	p.H1029L	GCCACGTGGTCGC	.	33	16	29	0	.	156	A	395294	T	A	395294	3	1	194	1	0	0	0	0	1	0	0	0	4529	1696	59	4	1636	4	DIP2C	10	395294	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		395294	135139453	838	24994											
PFKFB3	5209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6255708	6255708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PFKFB3	NM_004566	exon2	c.A199G	p.K67E	CCCACAAAAGGTG	.	55	29	45	0	.	117	G	6255708	A	G	6255708	3	3	194	1	0	0	0	0	1	0	0	0	11762	15	1	2	225	2	PFKFB3	10	6255708	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5860414	6255708	129279039	839	24995											
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	7213990	7213990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SFMBT2	NM_001029880	exon19	c.T2282C	p.V761A	AGGGTGACGGCCC	.	27	13	12	0	.	141	G	7213990	A	G	7213990	3	3	194	1	0	0	0	0	1	0	0	0	14158	275	10	2	414	2	SFMBT2	10	7213990	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	958282	7213990	128320757	840	24996											
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13217598	13217598	+	Missense_Mutation	SNP	A	A	T	rs138161730	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM10	NM_182751	exon6	c.A684T	p.R228S	AACTAGAGGTCAA	.	136	65	150	0	A|0.999;G|0.000	653	T	13217598	A	T	13217598	3	4	194	1	0	0	0	0	1	0	0	0	9385	301	11	4	702	4	MCM10	10	13217598	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6003608	13217598	122317149	841	24997											
FAM107B	83641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14563994	14563994	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM107B	NM_031453	exon4	c.A678T	p.P226P	CAATTCTGGTTTG	.	59	26	73	0	.	156	A	14563994	T	A	14563994	2	1	194	1	0	0	0	0	0	0	0	1	5390	1567	55	4		4	FAM107B	10	14563994	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1346396	14563994	120970753	842	24998											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17151661	17151661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CUBN	NM_001081	exon10	c.T1089A	p.D363E	TGAGGCATCTGGG	.	76	27	67	0	.	166	T	17151661	A	T	17151661	3	4	194	1	0	0	0	0	1	0	0	0	4051	214	8	4	10014	4	CUBN	10	17151661	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2587667	17151661	118383086	843	24999											
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18250689	18250689	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC39A12	NM_152725	exon3	c.A441C	p.L147L	CAGCCTACTGAGC	.	129	60	133	0	.	154	C	18250689	A	C	18250689	2	2	194	1	0	0	0	0	0	0	0	1	14615	378	14	5		5	SLC39A12	10	18250689	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1099028	18250689	117284058	844	25000											
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25887814	25887814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR158	NM_020752	exon11	c.C3259A	p.L1087I	GAGAAGCTTTTGA	.	76	30	88	0	.	141	A	25887814	C	A	25887814	3	1	194	1	0	0	0	0	1	0	0	0	6663	797	28	3	3301	3	GPR158	10	25887814	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7637125	25887814	109646933	845	25001											
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26463109	26463109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3A	NM_017433	exon30	c.A3916G	p.K1306E	GAAAAGAAGACAT	.	174	85	170	0	.	1007	G	26463109	A	G	26463109	3	3	194	1	0	0	0	0	1	0	0	0	10076	247	9	2	4026	2	MYO3A	10	26463109	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	575295	26463109	109071638	846	25002											
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43089253	43089253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF33B	NM_006955	exon5	c.A1145T	p.E382V	GGTTTCTCCCCTG	.	62	36	86	0	.	90	A	43089253	T	A	43089253	3	1	194	1	0	0	0	0	1	0	0	0	17852	1551	54	4	1195	4	ZNF33B	10	43089253	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	16626144	43089253	92445494	847	25003											
FXYD4	53828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43870979	43870979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FXYD4	NM_001184963	exon6	c.T130G	p.C44G	CTGATCTGCGGAG	.	83	38	88	0	.	90	G	43870979	T	G	43870979	3	3	194	1	0	0	0	0	1	0	0	0	6120	1580	55	5	144	5	FXYD4	10	43870979	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	781726	43870979	91663768	848	25004											
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45484737	45484737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASSF4	NM_032023	exon7	c.C547G	p.P183A	TTTACTCCAGCCT	.	52	19	68	0	.	290	G	45484737	C	G	45484737	3	3	194	1	0	0	0	0	1	0	0	0	13088	855	30	4	569	4	RASSF4	10	45484737	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1613758	45484737	90050010	849	25005											
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	47087208	47087208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPYR1	NM_005972	exon3	c.T425C	p.L142P	ATCAGCTCATCAT	.	124	24	107	0	.	524	C	47087208	T	C	47087208	3	2	194	1	0	0	0	0	1	0	0	0	12416	1551	54	2	427	2	PPYR1	10	47087208	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1602471	47087208	88447539	850	25006											
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48370707	48370707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF488	NM_153034	exon2	c.G175C	p.E59Q	GGCCCTGAGGCTG	.	24	7	35	0	.	91	C	48370707	G	C	48370707	3	2	194	1	0	0	0	0	1	0	0	0	17937	1291	45	4	177	4	ZNF488	10	48370707	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1283499	48370707	87164040	851	25007											
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48416370	48416370	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GDF2	NM_016204	exon1	c.T324C	p.I108I	CCGCACAATGTTG	.	48	19	59	0	.	229	G	48416370	A	G	48416370	2	3	194	1	0	0	0	0	0	0	0	1	6314	126	5	2		2	GDF2	10	48416370	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	45663	48416370	87118377	852	25008											
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49687696	49687696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP22	NM_001256025	exon4	c.G452T	p.W151L	GGGGCCCAGATGA	.	117	56	119	0	.	228	A	49687696	C	A	49687696	3	1	194	1	0	0	0	0	1	0	0	0	872	595	21	3	1690	3	ARHGAP22	10	49687696	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1271326	49687696	85847051	853	25009											
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50530956	50530956	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf71	NM_001135196	exon3	c.C366T	p.V122V	GCCAGTCCAGAGG	.	127	62	128	0	.	90	T	50530956	C	T	50530956	2	4	194	1	0	0	0	0	0	0	0	1	1614	842	30	3		3	C10orf71	10	50530956	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	843260	50530956	85003791	854	25010											
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50532101	50532101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf71	NM_001135196	exon3	c.A1511T	p.K504M	ACCTCAAGGACGT	.	58	32	85	0	.	90	T	50532101	A	T	50532101	3	4	194	1	0	0	0	0	1	0	0	0	1614	72	3	4	1513	4	C10orf71	10	50532101	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1145	50532101	85002646	855	25011											
PGBD3	267004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50724703	50724703	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGBD3	NM_170753	exon2	c.C458T	p.P153L	ATGACCTCGTCAT	.	72	34	122	0	.	109	A	50724703	T	A	50724703	3	1	194	1	0	0	0	0	1	0	0	0	11782	1551	54	4	1327	4	PGBD3	10	50724703	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	192602	50724703	84810044	856	25012											
AGAP7	653268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	51465326	51465326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001077685	exon7	c.A1130G	p.K377R	TGTTTCTTTTTAT	.	73	36	96	0	.	.	C	51465326	T	C	51465326	3	2	194	1	0	0	0	0	1	0	0	0	373	1609	56	2	865	2	AGAP7	10	51465326	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	740623	51465326	84069421	857	25013											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51585413	51585413	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCOA4	NM_001145261	exon9	c.A1560G	p.K520K	ATACAAAGAAGGA	.	82	41	70	0	.	1042	G	51585413	A	G	51585413	2	3	194	1	0	0	0	0	0	0	0	1	10231	69	3	2		2	NCOA4	10	51585413	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	120087	51585413	83949334	858	25014											
ASAH2	56624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52005188	52005188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASAH2	NM_001143974	exon2	c.A154T	p.T52S	TTTGGGTGGTTGA	.	83	35	105	0	.	90	A	52005188	T	A	52005188	3	1	194	1	0	0	0	0	1	0	0	0	1007	1696	59	4	2264	4	ASAH2	10	52005188	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	419775	52005188	83529559	859	25015											
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52603787	52603787	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	A1CF	NM_001198820	exon5	c.A219T	p.R73R	AAGGTCTCGGGGA	.	133	55	185	0	.	68	A	52603787	T	A	52603787	2	1	194	1	0	0	0	0	0	0	0	1	2	1538	54	4		4	A1CF	10	52603787	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	598599	52603787	82930960	860	25016											
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	53564432	53564432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRKG1	NM_006258	exon4	c.A680G	p.Y227C	CCGAGTATATGGA	.	38	20	61	0	.	523	G	53564432	A	G	53564432	3	3	194	1	0	0	0	0	1	0	0	0	12522	449	16	2	964	2	PRKG1	10	53564432	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	960645	53564432	81970315	861	25017											
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	60553242	60553242	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BICC1	NM_001080512	exon9	c.1048-2A>G	.	TTTTCTAGGGTTG	.	96	33	92	0	.	72	G	60553242	A	G	60553242	5	3	194	1	0	0	0	0	0	0	1	0	1427	434	15	2	1080	2	BICC1	10	60553242	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6988810	60553242	74981505	862	25018											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61829458	61829458	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK3	NM_020987	exon37	c.T11181G	p.S3727S	GGATGCAGAAATT	.	66	24	101	0	.	107	C	61829458	A	C	61829458	2	2	194	1	0	0	0	0	0	0	0	1	622	175	7	5		5	ANK3	10	61829458	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1276216	61829458	73705289	863	25019											
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61956318	61956318	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK3	NM_020987	exon15	c.A1755C	p.L585L	TTTCTGTAGCAGG	.	41	19	48	1	.	107	G	61956318	T	G	61956318	2	3	194	1	0	0	0	0	0	0	0	1	622	1625	57	5		5	ANK3	10	61956318	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	126860	61956318	73578429	864	25020											
C10orf107	219621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63441009	63441009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf107	NM_173554	exon2	c.C9A	p.F3L	GGATTTCTCTATT	.	47	6	54	0	.	90	A	63441009	C	A	63441009	3	1	194	1	0	0	0	0	1	0	0	0	1581	912	32	3	11	3	C10orf107	10	63441009	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1484691	63441009	72093738	865	25021											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63760062	63760062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARID5B	NM_032199	exon4	c.A715G	p.S239G	AACGAGAGTATAT	.	71	29	91	0	.	94	G	63760062	A	G	63760062	3	3	194	1	0	0	0	0	1	0	0	0	922	304	11	2	729	2	ARID5B	10	63760062	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	319053	63760062	71774685	866	25022											
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64415185	64415185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF365	NM_199452	exon4	c.C185T	p.T62I	ATCTCACCTTCCA	.	133	63	140	0	.	92	T	64415185	C	T	64415185	3	4	194	1	0	0	0	0	1	0	0	0	17866	507	18	3	1673	3	ZNF365	10	64415185	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	655123	64415185	71119562	867	25023											
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64425949	64425949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF365	NM_199451	exon7	c.A1281C	p.Q427H	ACTCCAAAATTGT	.	45	13	65	0	.	92	C	64425949	A	C	64425949	3	2	194	1	0	0	0	0	1	0	0	0	17866	11	1	5	2039	5	ZNF365	10	64425949	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10764	64425949	71108798	868	25024											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70332525	70332525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TET1	NM_030625	exon2	c.A430G	p.I144V	TATAAGATACTCC	.	55	41	78	0	.	663	G	70332525	A	G	70332525	3	3	194	1	0	0	0	0	1	0	0	0	15766	333	12	2	432	2	TET1	10	70332525	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5906576	70332525	65202222	869	25025											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70666604	70666604	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX50	NM_024045	exon2	c.A225G	p.E75E	CACTGAAGAAGGA	.	212	81	231	0	.	91	G	70666604	A	G	70666604	2	3	194	1	0	0	0	0	0	0	0	1	4368	69	3	2		2	DDX50	10	70666604	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	334079	70666604	64868143	870	25026											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70670895	70670895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX50	NM_024045	exon4	c.A532T	p.I178L	GATTTAATAGCTC	.	190	104	195	1	.	91	T	70670895	A	T	70670895	3	4	194	1	0	0	0	0	1	0	0	0	4368	101	4	4	546	4	DDX50	10	70670895	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4291	70670895	64863852	871	25027											
SUPV3L1	6832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	70968759	70968759	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUPV3L1	NM_003171	exon15	c.A2329T	p.R777X	GGGACGAGAAGAA	.	56	20	56	0	.	227	T	70968759	A	T	70968759	4	4	194	1	0	0	0	0	0	1	0	0	15399	296	11	4	2387	4	SUPV3L1	10	70968759	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	297864	70968759	64565988	872	25028											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73269837	73269837	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH23	NM_001171931	exon4	c.146-2A>T	.	TACTCCAGGTTCT	.	41	18	59	0	.	563	T	73269837	A	T	73269837	5	4	194	1	0	0	0	0	0	0	1	0	3108	202	7	4	154	4	CDH23	10	73269837	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2301078	73269837	62264910	873	25029											
SYNPO2L	79933	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75407619	75407619	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNPO2L	NM_001114133	exon4	c.T1791A	p.P597P	TGGGGCAGGCGCC	.	57	22	59	1	.	91	T	75407619	A	T	75407619	2	4	194	1	0	0	0	0	0	0	0	1	15455	175	7	4		4	SYNPO2L	10	75407619	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2137782	75407619	60127128	874	25030											
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567441	75567441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST2	NM_003635	exon3	c.A706G	p.T236A	CATATGTACTATG	.	53	19	91	0	.	91	C	75567441	T	C	75567441	3	2	194	1	0	0	0	0	1	0	0	0	10256	1638	57	2	1997	2	NDST2	10	75567441	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	159822	75567441	59967306	875	25031											
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79601686	79601686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DLG5	NM_004747	exon7	c.A1390G	p.T464A	CAGATGTGCTGCT	.	43	17	54	0	.	98	C	79601686	T	C	79601686	3	2	194	1	0	0	0	0	1	0	0	0	4558	1696	59	2	4473	2	DLG5	10	79601686	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4034245	79601686	55933061	876	25032											
DYDC1	143241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82102044	82102044	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYDC1	NM_001269053	exon4	c.C323G	p.A108G	TCTTGAGCTCTCT	.	67	29	84	0	.	68	C	82102044	G	C	82102044	3	2	194	1	0	0	0	0	1	0	0	0	4838	971	34	4	226	4	DYDC1	10	82102044	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2500358	82102044	53432703	877	25033											
LRIT1	26103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85991913	85991913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRIT1	NM_015613	exon4	c.T1642A	p.C548S	TGCAGCAGACAAG	.	95	36	88	0	.	90	T	85991913	A	T	85991913	3	4	194	1	0	0	0	0	1	0	0	0	8947	188	7	4	233	4	LRIT1	10	85991913	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3889869	85991913	49542834	878	25034											
SLC16A12	387700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91198482	91198482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC16A12	NM_213606	exon6	c.T907C	p.Y303H	CCAAGTACACAAA	.	60	41	119	0	.	69	G	91198482	A	G	91198482	3	3	194	1	0	0	0	0	1	0	0	0	14405	391	14	2	655	2	SLC16A12	10	91198482	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5206569	91198482	44336265	879	25035											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91469185	91469185	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF20B	NM_016195	exon4	c.A318G	p.S106S	AAGCTCAGGGCAG	.	69	53	174	1	.	93	G	91469185	A	G	91469185	2	3	194	1	0	0	0	0	0	0	0	1	8287	175	7	2		2	KIF20B	10	91469185	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	270703	91469185	44065562	880	25036											
HTR7	3363	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	92503355	92503355	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HTR7	NM_019859	exon3	c.T1388A	p.L463X	CCTGCTAACCAAT	.	42	7	85	0	.	91	T	92503355	A	T	92503355	4	4	194	1	0	0	0	0	0	1	0	0	7452	372	13	4	59	4	HTR7	10	92503355	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1034170	92503355	43031392	881	25037											
CEP55	55165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95259889	95259889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP55	NM_001127182	exon2	c.A81T	p.L27F	TACATTAGAAAAA	.	47	38	147	1	.	90	T	95259889	A	T	95259889	3	4	194	1	0	0	0	0	1	0	0	0	3255	417	15	4	83	4	CEP55	10	95259889	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2756534	95259889	40274858	882	25038											
BLNK	29760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97976426	97976426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BLNK	NM_001114094	exon7	c.C590T	p.S197L	GGAGGTGAACTGC	.	68	49	156	0	.	92	A	97976426	G	A	97976426	3	1	194	1	0	0	0	0	1	0	0	0	1447	1294	45	3	824	3	BLNK	10	97976426	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2716537	97976426	37558321	883	25039											
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98145897	98145897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLL2	NM_012465	exon15	c.A1928C	p.N643T	TTTTTGTTTGTGG	.	31	19	59	0	.	93	G	98145897	T	G	98145897	3	3	194	1	0	0	0	0	1	0	0	0	15943	1725	60	5	1147	5	TLL2	10	98145897	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	169471	98145897	37388850	884	25040											
COL17A1	1308	broad.mit.edu;bcgsc.ca	37	10	105794488	105794488	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL17A1	NM_000494	exon51	c.T3657A	p.P1219P	ACCAGGAGGTCCT	.	99	7	199	0	.	95	T	105794488	A	T	105794488	2	4	194	1	0	0	0	0	0	0	0	1	3674	291	11	4		4	COL17A1	10	105794488	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7648591	105794488	29740259	885	25041											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115947807	115947807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TDRD1	NM_198795	exon2	c.A217T	p.T73S	GAGCAAACCAAAC	.	97	83	178	1	.	90	T	115947807	A	T	115947807	3	4	194	1	0	0	0	0	1	0	0	0	15727	43	2	4	219	4	TDRD1	10	115947807	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10153319	115947807	19586940	886	25042											
SLC18A2	6571	broad.mit.edu;bcgsc.ca	37	10	119029609	119029609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC18A2	NM_003054	exon14	c.T1214C	p.I405T	TGCCTATCATGGG	.	76	6	106	0	.	90	C	119029609	T	C	119029609	3	2	194	1	0	0	0	0	1	0	0	0	14426	1435	50	2	1264	2	SLC18A2	10	119029609	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3081802	119029609	16505138	887	25043											
PRLHR	2834	broad.mit.edu;bcgsc.ca	37	10	120353894	120353894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRLHR	NM_004248	exon2	c.C863A	p.A288D	CAGACGGCGAACA	.	6	5	16	0	.	90	T	120353894	G	T	120353894	3	4	194	1	0	0	0	0	1	0	0	0	12530	1203	42	3	253	3	PRLHR	10	120353894	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1324285	120353894	15180853	888	25044											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402796	124402796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DMBT1	NM_007329	exon53	c.A7124G	p.Y2375C	GCTGCTACCGAGG	.	72	52	144	0	.	494	G	124402796	A	G	124402796	3	3	194	1	0	0	0	0	1	0	0	0	4577	391	14	2	7334	2	DMBT1	10	124402796	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4048902	124402796	11131951	889	25045											
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	129869164	129869164	+	Silent	SNP	G	G	T	rs143511195	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRE	NM_006504	exon15	c.G1386T	p.P462P	CATCCCGTGTAAG	.	34	23	68	0	G|1.000;C|0.000	227	T	129869164	G	T	129869164	2	4	194	1	0	0	0	0	0	0	0	1	12800	1159	40	1		1	PTPRE	10	129869164	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5466368	129869164	5665583	890	25046											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	135013094	135013094	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KNDC1	NM_152643	exon15	c.C2891G	p.S964X	AGGCGTCACCCTC	.	30	23	69	0	.	229	G	135013094	C	G	135013094	4	3	194	1	0	0	0	0	0	1	0	0	8426	838	29	4	2949	4	KNDC1	10	135013094	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5143930	135013094	521653	891	25047											
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	430368	430368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANO9	NM_001012302	exon8	c.T575A	p.V192D	AGCCAGACGAAGT	.	97	85	233	1	.	227	T	430368	A	T	430368	3	4	194	1	0	0	0	0	1	0	0	0	704	275	10	4	1837	4	ANO9	11	430368	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		430368	134576148	892	25048											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1083817	1083817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC2	NM_002457	exon18	c.C2349A	p.S783R	CCTCAGCTGCCAG	.	22	20	72	0	.	90	A	1083817	C	A	1083817	3	1	194	1	0	0	0	0	1	0	0	0	9975	796	28	3	2419	3	MUC2	11	1083817	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	653449	1083817	133922699	893	25049											
MUC5B	727897	broad.mit.edu;bcgsc.ca	37	11	1261069	1261069	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_002458	exon28	c.T3624C	p.N1208N	CTTCAATGAGGAC	.	22	21	43	1	.	.	C	1261069	T	C	1261069	2	2	194	1	0	0	0	0	0	0	0	1	9979	1461	51	2		2	MUC5B	11	1261069	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	177252	1261069	133745447	894	25050											
KRTAP5-4	387267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1642911	1642911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001012709	exon1	c.A413G	p.Q138R	CTGCACTGGGAGC	.	39	31	111	0	.	.	C	1642911	T	C	1642911	3	2	194	1	0	0	0	0	1	0	0	0	8563	1580	55	2	277	2	KRTAP5-4	11	1642911	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	381842	1642911	133363605	895	25051											
TNNI2	7136	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1861801	1861801	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNNI2	NM_001145841	exon3	c.A101T	p.E34V	AGGAGGAGAGCCG	.	18	16	71	2	.	90	T	1861801	A	T	1861801	3	4	194	1	0	0	0	0	1	0	0	0	16324	304	11	4	130	4	TNNI2	11	1861801	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	218890	1861801	133144715	896	25052											
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	3249418	3249418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRGPRE	NM_001039165	exon2	c.G612T	p.E204D	GCCTCGCTCCACC	.	17	15	42	0	.	136	A	3249418	C	A	3249418	3	1	194	1	0	0	0	0	1	0	0	0	9764	796	28	3	330	3	MRGPRE	11	3249418	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1387617	3249418	131757098	897	25053											
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4842970	4842970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51F2	NM_001004753	exon1	c.C355A	p.H119N	TTTCTACACGGAT	.	55	46	132	0	.	70	A	4842970	C	A	4842970	3	1	194	1	0	0	0	0	1	0	0	0	11097	478	17	3	357	3	OR51F2	11	4842970	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1593552	4842970	130163546	898	25054											
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4870336	4870336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51S1	NM_001004758	exon1	c.T103A	p.W35R	ATGTCCACCAGGA	.	67	55	120	0	.	72	T	4870336	A	T	4870336	3	4	194	1	0	0	0	0	1	0	0	0	11105	159	6	4	871	4	OR51S1	11	4870336	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	27366	4870336	130136180	899	25055											
OR51A7	119687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4928636	4928636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51A7	NM_001004749	exon1	c.C37A	p.L13I	CTTTTCCTTCTGA	.	27	21	66	1	.	70	A	4928636	C	A	4928636	3	1	194	1	0	0	0	0	1	0	0	0	11088	681	24	3	39	3	OR51A7	11	4928636	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	58300	4928636	130077880	900	25056											
OR51G2	81282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936808	4936808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51G2	NM_001005238	exon1	c.A86C	p.H29P	CAGATGTGCATGC	.	49	7	84	1	.	70	G	4936808	T	G	4936808	3	3	194	1	0	0	0	0	1	0	0	0	11099	1696	59	5	862	5	OR51G2	11	4936808	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	8172	4936808	130069708	901	25057											
OR51A2	401667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4976050	4976050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51A2	NM_001004748	exon1	c.A894C	p.K298N	AATCTGTTTAGTT	.	156	140	176	0	.	68	G	4976050	T	G	4976050	3	3	194	1	0	0	0	0	1	0	0	0	11086	1722	60	5	49	5	OR51A2	11	4976050	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	39242	4976050	130030466	902	25058											
OR52N5	390075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5799159	5799159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR52N5	NM_001001922	exon1	c.A706T	p.S236C	AGAGGCTGATCGC	.	62	48	128	0	.	70	A	5799159	T	A	5799159	3	1	194	1	0	0	0	0	1	0	0	0	11130	1580	55	4	272	4	OR52N5	11	5799159	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	823109	5799159	129207357	903	25059											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6644033	6644033	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DCHS1	NM_003737	exon21	c.A8874T	p.L2958L	AAGTCCTAGGACC	.	29	25	72	0	.	73	A	6644033	T	A	6644033	2	1	194	1	0	0	0	0	0	0	0	1	4287	1509	53	4		4	DCHS1	11	6644033	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	844874	6644033	128362483	904	25060											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6653396	6653396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DCHS1	NM_003737	exon6	c.A3347T	p.E1116V	TGGTTCTCAGCCA	.	30	29	58	0	.	73	A	6653396	T	A	6653396	3	1	194	1	0	0	0	0	1	0	0	0	4287	1551	54	4	6613	4	DCHS1	11	6653396	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	9363	6653396	128353120	905	25061											
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6816315	6816315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6A2	NM_003696	exon1	c.A625G	p.I209V	TAAAAATGGCCAG	.	24	21	45	0	.	94	C	6816315	T	C	6816315	3	2	194	1	0	0	0	0	1	0	0	0	11186	1464	51	2	362	2	OR6A2	11	6816315	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	162919	6816315	128190201	906	25062											
TUB	7275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	8111646	8111646	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUB	NM_003320	exon4	c.A286T	p.K96X	AAGAAGAAGCGCC	.	82	28	175	0	.	91	T	8111646	A	T	8111646	4	4	194	1	0	0	0	0	0	1	0	0	16739	247	9	4	342	4	TUB	11	8111646	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1295331	8111646	126894870	907	25063											
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9446500	9446500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IPO7	NM_006391	exon11	c.A1181T	p.Q394L	CTGCCCAGACACT	.	57	49	119	0	.	271	T	9446500	A	T	9446500	3	4	194	1	0	0	0	0	1	0	0	0	7797	188	7	4	1223	4	IPO7	11	9446500	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1334854	9446500	125560016	908	25064											
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	16816089	16816089	+	Missense_Mutation	SNP	C	C	A	rs150403598	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHA7	NM_175058	exon19	c.G2691T	p.Q897H	CCTCAGCTGGGGT	.	31	21	67	0	C|1.000;G|0.000	227	A	16816089	C	A	16816089	3	1	194	1	0	0	0	0	1	0	0	0	12061	796	28	3	694	3	PLEKHA7	11	16816089	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7369589	16816089	118190427	909	25065											
KCNC1	3746	broad.mit.edu;bcgsc.ca	37	11	17801169	17801169	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNC1	NM_001112741	exon3	c.A1671T	p.P557P	GTGCCCACCTGGT	.	36	30	84	2	.	91	T	17801169	A	T	17801169	2	4	194	1	0	0	0	0	0	0	0	1	8014	146	6	4		4	KCNC1	11	17801169	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	985080	17801169	117205347	910	25066											
SAA2	6289	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18267497	18267497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAA2	NM_030754	exon3	c.A190G	p.K64E	CCCTTTTGGCAGC	.	122	35	248	0	.	514	C	18267497	T	C	18267497	3	2	194	1	0	0	0	0	1	0	0	0	13799	1821	63	2	212	2	SAA2	11	18267497	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	466328	18267497	116739019	911	25067											
SAA1	6288	bcgsc.ca;mdanderson.org	37	11	18290840	18290840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAA1	NM_199161	exon3	c.A190G	p.K64E	GCTGCCAAAAGGG	.	63	27	145	0	.	650	G	18290840	A	G	18290840	3	3	194	1	0	0	0	0	1	0	0	0	13798	131	5	2	196	2	SAA1	11	18290840	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	23343	18290840	116715676	912	25068											
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18743196	18743196	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGSF22	NM_173588	exon4	c.C264T	p.A88A	CACCCGGGCTCGG	.	26	22	77	0	.	140	A	18743196	G	A	18743196	2	1	194	1	0	0	0	0	0	0	0	1	7600	1219	43	3		3	IGSF22	11	18743196	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	452356	18743196	116263320	913	25069											
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18755139	18755139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPN5	NM_032781	exon10	c.C1044A	p.D348E	CAGAGGGTCGTCA	.	48	41	99	0	.	229	T	18755139	G	T	18755139	3	4	194	1	0	0	0	0	1	0	0	0	12791	1252	44	3	677	3	PTPN5	11	18755139	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	11943	18755139	116251377	914	25070											
LDLRAD3	143458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36057758	36057758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LDLRAD3	NM_174902	exon2	c.G152T	p.G51V	GTGACGGGCTGCC	.	44	21	54	0	.	90	T	36057758	G	T	36057758	3	4	194	1	0	0	0	0	1	0	0	0	8707	1232	43	3	158	3	LDLRAD3	11	36057758	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	17302619	36057758	98948758	915	25071											
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36596843	36596843	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAG1	NM_000448	exon2	c.A1989C	p.A663A	GCTGGCAGATGAG	.	92	38	96	0	.	230	C	36596843	A	C	36596843	2	2	194	1	0	0	0	0	0	0	0	1	13003	175	7	5		5	RAG1	11	36596843	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	539085	36596843	98409673	916	25072											
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36614915	36614915	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAG2	NM_001243785	exon3	c.T804C	p.N268N	TTCATCATTGTTA	.	48	18	48	0	.	95	G	36614915	A	G	36614915	2	3	194	1	0	0	0	0	0	0	0	1	13005	214	8	2		2	RAG2	11	36614915	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	18072	36614915	98391601	917	25073											
ALX4	60529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44297157	44297157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALX4	NM_021926	exon2	c.T518A	p.V173E	ATCCCCACAGTGT	.	52	26	45	0	.	90	T	44297157	A	T	44297157	3	4	194	1	0	0	0	0	1	0	0	0	558	159	6	4	729	4	ALX4	11	44297157	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7682242	44297157	90709359	918	25074											
CREB3L1	90993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46334468	46334468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CREB3L1	NM_052854	exon8	c.C1029A	p.N343K	TGCCAACAGGTGG	.	38	14	39	0	.	92	A	46334468	C	A	46334468	3	1	194	1	0	0	0	0	1	0	0	0	3856	477	17	3	1059	3	CREB3L1	11	46334468	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2037311	46334468	88672048	919	25075											
MYBPC3	4607	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47372124	47372124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYBPC3	NM_000256	exon3	c.A335T	p.E112V	GTGGCCTCAGCAG	.	188	78	251	1	.	92	A	47372124	T	A	47372124	3	1	194	1	0	0	0	0	1	0	0	0	10013	1551	54	4	3610	4	MYBPC3	11	47372124	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1037656	47372124	87634392	920	25076											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55110910	55110910	+	Silent	SNP	A	A	G	rs201952971	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A16	NM_001005274	exon1	c.A234G	p.K78K	ACCCAAATTGATG	.	74	41	81	0	A|0.998;G|0.002	69	G	55110910	A	G	55110910	2	3	194	1	0	0	0	0	0	0	0	1	11041	98	4	2		2	OR4A16	11	55110910	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7738786	55110910	79895606	921	25077											
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135489	55135489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A15	NM_001005275	exon1	c.G130A	p.G44R	CTCTTAGGGCTCA	.	68	31	71	0	.	70	A	55135489	G	A	55135489	3	1	194	1	0	0	0	0	1	0	0	0	11040	1000	35	3	132	3	OR4A15	11	55135489	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	24579	55135489	79871027	922	25078											
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135678	55135678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A15	NM_001005275	exon1	c.C319A	p.P107T	TTTGCTCCCAAAA	.	35	16	43	0	.	70	A	55135678	C	A	55135678	3	1	194	1	0	0	0	0	1	0	0	0	11040	855	30	3	321	3	OR4A15	11	55135678	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	189	55135678	79870838	923	25079											
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55433038	55433038	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4C6	NM_001004704	exon1	c.C396T	p.I132I	CACGATCATCATG	.	70	31	65	0	.	70	T	55433038	C	T	55433038	2	4	194	1	0	0	0	0	0	0	0	1	11052	816	29	3		3	OR4C6	11	55433038	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	297360	55433038	79573478	924	25080											
OR8I2	120586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55861466	55861466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8I2	NM_001003750	exon1	c.A683T	p.Q228L	GGATCCAGTCAGC	.	76	29	66	1	.	113	T	55861466	A	T	55861466	3	4	194	1	0	0	0	0	1	0	0	0	11240	188	7	4	685	4	OR8I2	11	55861466	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	428428	55861466	79145050	925	25081											
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55905003	55905003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8J3	NM_001004064	exon1	c.A192T	p.R64S	TAGATGTCTCAGG	.	79	30	110	0	.	70	A	55905003	T	A	55905003	3	1	194	1	0	0	0	0	1	0	0	0	11242	1664	58	4	757	4	OR8J3	11	55905003	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	43537	55905003	79101513	926	25082											
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55926969	55926969	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K5	NM_001004058	exon1	c.T825G	p.S275S	AAACACAGAAGCC	.	95	36	110	0	.	72	C	55926969	A	C	55926969	2	2	194	1	0	0	0	0	0	0	0	1	11245	175	7	5		5	OR8K5	11	55926969	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	21966	55926969	79079547	927	25083											
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944226	55944226	+	Missense_Mutation	SNP	A	A	G	rs201858818		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5J2	NM_001005492	exon1	c.A133G	p.M45V	CTGGGCATGATCC	.	72	36	74	0	A|0.999;G|0.001	115	G	55944226	A	G	55944226	3	3	194	1	0	0	0	0	1	0	0	0	11165	217	8	2	135	2	OR5J2	11	55944226	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	17257	55944226	79062290	928	25084											
OR8K3	219473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56086359	56086359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K3	NM_001005202	exon1	c.C577A	p.H193N	AATACACATGAAA	.	75	29	85	0	.	70	A	56086359	C	A	56086359	3	1	194	1	0	0	0	0	1	0	0	0	11244	478	17	3	579	3	OR8K3	11	56086359	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	142133	56086359	78920157	929	25085											
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56114284	56114284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K1	NM_001002907	exon1	c.T770C	p.F257S	TCATGTTCTATGG	.	65	24	107	0	.	70	C	56114284	T	C	56114284	3	2	194	1	0	0	0	0	1	0	0	0	11243	1783	62	2	772	2	OR8K1	11	56114284	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	27925	56114284	78892232	930	25086											
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	56114424	56114424	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K1	NM_001002907	exon1	c.A910T	p.K304X	GAAGTAAAAGATG	.	41	16	51	0	.	70	T	56114424	A	T	56114424	4	4	194	1	0	0	0	0	0	1	0	0	11243	15	1	4	912	4	OR8K1	11	56114424	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	140	56114424	78892092	931	25087											
OR5AP2	338675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56409824	56409824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5AP2	NM_001002925	exon1	c.G92T	p.G31V	AGGACTCCTTGTA	.	52	24	48	0	.	71	A	56409824	C	A	56409824	3	1	194	1	0	0	0	0	1	0	0	0	11144	855	30	3	862	3	OR5AP2	11	56409824	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	295400	56409824	78596692	932	25088											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56468593	56468593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001013358	exon1	c.C730A	p.L244M	TCCCACCTGACCT	.	93	18	104	0	.	.	A	56468593	C	A	56468593	3	1	194	1	0	0	0	0	1	0	0	0	11252	680	24	3	732	3	OR9G9	11	56468593	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	58769	56468593	78537923	933	25089											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	56468658	56468658	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001013358	exon1	c.T795G	p.Y265X	TAGCTATTCTTTT	.	72	11	94	0	.	.	G	56468658	T	G	56468658	4	3	194	1	0	0	0	0	0	1	0	0	11252	1500	52	5	797	5	OR9G9	11	56468658	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	65	56468658	78537858	934	25090											
OR5B3	441608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58170104	58170104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5B3	NM_001005469	exon1	c.C779A	p.P260H	GAGCTGGGTTGTA	.	48	20	55	0	.	68	T	58170104	G	T	58170104	3	4	194	1	0	0	0	0	1	0	0	0	11152	1232	43	3	167	3	OR5B3	11	58170104	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1701446	58170104	76836412	935	25091											
CD6	923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60739381	60739381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD6	NM_006725	exon1	c.T44A	p.L15H	CAGCCCTCTCAGG	.	23	7	39	1	.	227	A	60739381	T	A	60739381	3	1	194	1	0	0	0	0	1	0	0	0	3028	1551	54	4	46	4	CD6	11	60739381	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2569277	60739381	74267135	936	25092											
DDB1	1642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	61091480	61091480	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDB1	NM_001923	exon7	c.A892T	p.K298X	GATCCTTGAGAGT	.	170	75	169	0	.	661	A	61091480	T	A	61091480	4	1	194	1	0	0	0	0	0	1	0	0	4323	1821	63	4	2614	4	DDB1	11	61091480	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	352099	61091480	73915036	937	25093											
CYBASC3	220002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61124109	61124109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYBASC3	NM_001161454	exon4	c.A128T	p.Y43F	ATCCAGTAGATAG	.	87	44	89	0	.	90	A	61124109	T	A	61124109	3	1	194	1	0	0	0	0	1	0	0	0	4132	1638	57	4	671	4	CYBASC3	11	61124109	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	32629	61124109	73882407	938	25094											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62285505	62285505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A16384G	p.K5462E	TCCCTTTCACTTT	.	82	41	86	0	.	109	C	62285505	T	C	62285505	3	2	194	1	0	0	0	0	1	0	0	0	414	1792	62	2	1408	2	AHNAK	11	62285505	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1161396	62285505	72721011	939	25095											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62288328	62288328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A13561G	p.M4521V	CACTCATGGAGAT	.	98	29	111	0	.	109	C	62288328	T	C	62288328	3	2	194	1	0	0	0	0	1	0	0	0	414	1464	51	2	4231	2	AHNAK	11	62288328	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2823	62288328	72718188	940	25096											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62289734	62289734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A12155G	p.H4052R	GGGCCATGAACAT	.	70	34	81	0	.	109	C	62289734	T	C	62289734	3	2	194	1	0	0	0	0	1	0	0	0	414	1464	51	2	5637	2	AHNAK	11	62289734	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1406	62289734	72716782	941	25097											
B3GAT3	26229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62384649	62384649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GAT3	NM_012200	exon3	c.A428T	p.Q143L	AGCCGCTGGGCTT	.	50	27	57	0	.	90	A	62384649	T	A	62384649	3	1	194	1	0	0	0	0	1	0	0	0	1255	1580	55	4	591	4	B3GAT3	11	62384649	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	94915	62384649	72621867	942	25098											
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62763203	62763203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC22A8	NM_001184732	exon7	c.G974A	p.R325H	GTCATGCGGCGCA	.	65	28	107	0	.	93	T	62763203	C	T	62763203	3	4	194	1	0	0	0	0	1	0	0	0	14460	768	27	1	674	1	SLC22A8	11	62763203	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	378554	62763203	72243313	943	25099											
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64359432	64359432	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC22A12	NM_001276326	exon1	c.402+2T>A	.	CCAAGGTAGGGCC	.	21	11	28	0	.	91	A	64359432	T	A	64359432	5	1	194	1	0	0	0	0	0	0	1	0	14443	1652	57	4	406	4	SLC22A12	11	64359432	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1596229	64359432	70647084	944	25100											
SF1	7536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64536751	64536751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SF1	NM_001178030	exon7	c.G1098T	p.K366N	CTGCATCTTCCGT	.	126	51	131	0	.	227	A	64536751	C	A	64536751	3	1	194	1	0	0	0	0	1	0	0	0	14145	912	32	3	1362	3	SF1	11	64536751	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	177319	64536751	70469765	945	25101											
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64601242	64601242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC42BPG	NM_017525	exon22	c.A2533T	p.R845W	CCGGCCTCAGATC	.	27	11	42	0	.	528	A	64601242	T	A	64601242	3	1	194	1	0	0	0	0	1	0	0	0	3074	1550	54	4	2186	4	CDC42BPG	11	64601242	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	64491	64601242	70405274	946	25102											
PPP2R5B	5526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64699068	64699068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP2R5B	NM_006244	exon10	c.G983C	p.C328S	AAACCTGCACCCA	.	49	16	59	0	.	660	C	64699068	G	C	64699068	3	2	194	1	0	0	0	0	1	0	0	0	12393	1319	46	4	1017	4	PPP2R5B	11	64699068	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	97826	64699068	70307448	947	25103											
DRAP1	10589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65688799	65688799	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DRAP1	NM_006442	exon7	c.513-2A>T	.	CCCTGCAGCCCCC	.	148	80	168	0	.	90	T	65688799	A	T	65688799	5	4	194	1	0	0	0	0	0	0	1	0	4755	202	7	4	537	4	DRAP1	11	65688799	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	989731	65688799	69317717	948	25104											
KLC2	64837	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66030441	66030441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLC2	NM_022822	exon5	c.A686G	p.E229G	ACCTGGAGAAGAC	.	66	10	86	0	.	90	G	66030441	A	G	66030441	3	3	194	1	0	0	0	0	1	0	0	0	8334	304	11	2	700	2	KLC2	11	66030441	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	341642	66030441	68976075	949	25105											
DPP3	10072	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66258740	66258740	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPP3	NM_130443	exon7	c.T684C	p.S228S	GGACTCTGAGGTG	.	104	47	162	1	.	46	C	66258740	T	C	66258740	2	2	194	1	0	0	0	0	0	0	0	1	4728	1567	55	2		2	DPP3	11	66258740	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	228299	66258740	68747776	950	25106											
RNF121	55298	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71705854	71705854	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF121	NM_018320	exon7	c.A717G	p.E239E	CAGTGAAGAGGGG	.	49	24	69	2	.	226	G	71705854	A	G	71705854	2	3	194	1	0	0	0	0	0	0	0	1	13431	69	3	2		2	RNF121	11	71705854	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5447114	71705854	63300662	951	25107											
FOLR1	2348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71907162	71907162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOLR1	NM_016729	exon4	c.T715A	p.W239R	GGGCCCTGGGCAG	.	84	39	99	0	.	91	A	71907162	T	A	71907162	3	1	194	1	0	0	0	0	1	0	0	0	5981	1580	55	4	729	4	FOLR1	11	71907162	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	201308	71907162	63099354	952	25108											
ATG16L2	89849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72538273	72538273	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATG16L2	NM_033388	exon14	c.G1407T	p.V469V	TGACGTGGTGTGT	.	68	24	90	0	.	90	T	72538273	G	T	72538273	2	4	194	1	0	0	0	0	0	0	0	1	1092	1335	47	3		3	ATG16L2	11	72538273	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	631111	72538273	62468243	953	25109											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73066691	73066691	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF17	NM_014786	exon4	c.A3567G	p.L1189L	GTTCCTAGAGGTA	.	53	20	57	0	.	227	G	73066691	A	G	73066691	2	3	194	1	0	0	0	0	0	0	0	1	900	407	15	2		2	ARHGEF17	11	73066691	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	528418	73066691	61939825	954	25110											
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74800166	74800166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2AT4	NM_001005285	exon1	c.C593T	p.T198I	TGGGGGGTGGTGT	.	55	24	58	0	.	69	A	74800166	G	A	74800166	3	1	194	1	0	0	0	0	1	0	0	0	10987	1261	44	3	372	3	OR2AT4	11	74800166	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1733475	74800166	60206350	955	25111											
KLHL35	283212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75139660	75139660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039548	exon2	c.T893C	p.L298P	TCAGCTAGGTCCA	.	31	17	37	0	.	.	G	75139660	A	G	75139660	3	3	194	1	0	0	0	0	1	0	0	0	8388	420	15	2	878	2	KLHL35	11	75139660	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	339494	75139660	59866856	956	25112											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	76903162	76903162	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO7A	NM_000260	exon31	c.A3991T	p.K1331X	TACGCCAAGGAGC	.	110	57	128	0	.	138	T	76903162	A	T	76903162	4	4	194	1	0	0	0	0	0	1	0	0	10082	131	5	4	4143	4	MYO7A	11	76903162	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1763502	76903162	58103354	957	25113											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85436399	85436399	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYTL2	NM_206927	exon1	c.C1101A	p.P367P	ATCCTGGGGAAAA	.	53	29	58	0	.	137	T	85436399	G	T	85436399	2	4	194	1	0	0	0	0	0	0	0	1	15480	1219	43	3		3	SYTL2	11	85436399	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	8533237	85436399	49570117	958	25114											
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86103710	86103710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC81	NM_001156474	exon4	c.A426T	p.Q142H	GAAACAAAATGTG	.	106	38	130	0	.	91	T	86103710	A	T	86103710	3	4	194	1	0	0	0	0	1	0	0	0	2855	11	1	4	440	4	CCDC81	11	86103710	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	667311	86103710	48902806	959	25115											
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86108753	86108753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC81	NM_001156474	exon6	c.A726T	p.K242N	GTTAAAAGACCAG	.	40	16	45	0	.	91	T	86108753	A	T	86108753	3	4	194	1	0	0	0	0	1	0	0	0	2855	69	3	4	748	4	CCDC81	11	86108753	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5043	86108753	48897763	960	25116											
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88042455	88042455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTSC	NM_001814	exon4	c.A517T	p.N173Y	CAAAGTTGTGATC	.	55	23	73	0	.	90	A	88042455	T	A	88042455	3	1	194	1	0	0	0	0	1	0	0	0	4031	1812	63	4	890	4	CTSC	11	88042455	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1933702	88042455	46964061	961	25117											
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069089	89069089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOX4	NM_016931	exon17	c.G1540C	p.A514P	TCAGTGCATGATA	.	231	99	255	1	.	515	G	89069089	C	G	89069089	3	3	194	1	0	0	0	0	1	0	0	0	10558	710	25	4	204	4	NOX4	11	89069089	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1026634	89069089	45937427	962	25118											
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	89907042	89907042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAALAD2	NM_005467	exon14	c.G1461T	p.W487C	AAGCTGGTTGGAA	.	103	46	103	0	.	92	T	89907042	G	T	89907042	3	4	194	1	0	0	0	0	1	0	0	0	10128	1270	44	3	1515	3	NAALAD2	11	89907042	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	837953	89907042	45099474	963	25119											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92523226	92523226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT3	NM_001008781	exon7	c.A4453T	p.T1485S	GAAGCCACAGATA	.	131	61	138	0	.	73	T	92523226	A	T	92523226	3	4	194	1	0	0	0	0	1	0	0	0	5691	159	6	4	4479	4	FAT3	11	92523226	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2616184	92523226	42483290	964	25120											
SLC36A4	120103	ucsc.edu;bcgsc.ca	37	11	92899082	92899082	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC36A4	NM_152313	exon9	c.867+2T>C	.	ATTCTTACCACTC	.	26	4	32	0	.	93	G	92899082	A	G	92899082	5	3	194	1	0	0	0	0	0	0	1	0	14596	405	14	2	661	2	SLC36A4	11	92899082	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	375856	92899082	42107434	965	25121											
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93806484	93806484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEPHL1	NM_001098672	exon8	c.C1383G	p.I461M	AGTCATCAAGGCA	.	70	34	85	0	.	71	G	93806484	C	G	93806484	3	3	194	1	0	0	0	0	1	0	0	0	7055	816	29	4	1413	4	HEPHL1	11	93806484	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	907402	93806484	41200032	966	25122											
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94040439	94040439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOLR4	NM_001199206	exon3	c.T457A	p.W153R	TCCAACTGGCGTG	.	65	30	97	0	.	23	A	94040439	T	A	94040439	3	1	194	1	0	0	0	0	1	0	0	0	5984	1580	55	4	446	4	FOLR4	11	94040439	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	233955	94040439	40966077	967	25123											
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94113896	94113896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR83	NM_016540	exon4	c.C691A	p.P231T	CAGCTGGCTCAGG	.	31	12	41	0	.	92	T	94113896	G	T	94113896	3	4	194	1	0	0	0	0	1	0	0	0	6713	1203	42	3	584	3	GPR83	11	94113896	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	73457	94113896	40892620	968	25124											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94354059	94354059	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PIWIL4	NM_152431	exon20	c.A2460T	p.P820P	TGTCCCAGCACCA	.	86	40	82	0	.	91	T	94354059	A	T	94354059	2	4	194	1	0	0	0	0	0	0	0	1	11960	175	7	4		4	PIWIL4	11	94354059	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	240163	94354059	40652457	969	25125											
MMP7	4316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102394039	102394039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP7	NM_002423	exon5	c.A707T	p.Y236F	TTTCCATAGGTTG	.	77	20	95	0	.	651	A	102394039	T	A	102394039	3	1	194	1	0	0	0	0	1	0	0	0	9667	1406	49	4	104	4	MMP7	11	102394039	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	8039980	102394039	32612477	970	25126											
MMP10	4319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102642848	102642848	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP10	NM_002425	exon10	c.1227-2A>T	.	CAAATCTAAACCA	.	53	17	55	0	.	713	A	102642848	T	A	102642848	5	1	194	1	0	0	0	0	0	0	1	0	9649	1536	53	4	213	4	MMP10	11	102642848	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	248809	102642848	32363668	971	25127											
MMP12	4321	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102742328	102742328	+	RNA	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP12	.	.	.	.	ACCTCCTGAATGT	.	54	25	78	0	.	226	G	102742328	T	G	102742328	1	3	194	0	1	0	0	0	0	0	0	0	9651	1567	55	5		5	MMP12	11	102742328	RNA	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	99480	102742328	32264188	972	25128											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102984375	102984375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYNC2H1	NM_001377	exon2	c.A305T	p.E102V	TGTTAGAGTCACC	.	122	53	140	0	.	68	T	102984375	A	T	102984375	3	4	194	1	0	0	0	0	1	0	0	0	4846	304	11	4	311	4	DYNC2H1	11	102984375	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	242047	102984375	32022141	973	25129											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYNC2H1	NM_001377	exon19	c.G2758T	p.D920Y	GTGATTGATGATC	.	43	21	49	0	.	68	T	103018556	G	T	103018556	3	4	194	1	0	0	0	0	1	0	0	0	4846	1290	45	3	2832	3	DYNC2H1	11	103018556	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	34181	103018556	31987960	974	25130											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105732861	105732861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077244	exon5	c.A599T	p.E200V	TAGAAGAACTTGA	.	90	41	98	0	.	230	T	105732861	A	T	105732861	3	4	194	1	0	0	0	0	1	0	0	0	6770	246	9	4	613	4	GRIA4	11	105732861	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2714305	105732861	29273655	975	25131											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105769103	105769103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077244	exon7	c.T835A	p.W279R	GATCGCTGGAAGA	.	143	61	153	0	.	230	A	105769103	T	A	105769103	3	1	194	1	0	0	0	0	1	0	0	0	6770	1580	55	4	857	4	GRIA4	11	105769103	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	36242	105769103	29237413	976	25132											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105795169	105795169	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077243	exon12	c.A1521G	p.R507R	GGTACGAGAGGAG	.	64	31	99	0	.	230	G	105795169	A	G	105795169	2	3	194	1	0	0	0	0	0	0	0	1	6770	291	11	2		2	GRIA4	11	105795169	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	26066	105795169	29211347	977	25133											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105795274	105795274	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077243	exon12	c.T1626A	p.P542P	GGATCCTCTGGCC	.	127	63	128	0	.	230	A	105795274	T	A	105795274	2	1	194	1	0	0	0	0	0	0	0	1	6770	1538	54	4		4	GRIA4	11	105795274	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	105	105795274	29211242	978	25134											
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107673871	107673871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC35F2	NM_017515	exon7	c.C795A	p.F265L	TGCCACGAACAGC	.	191	77	242	0	.	90	T	107673871	G	T	107673871	3	4	194	1	0	0	0	0	1	0	0	0	14589	1049	37	1	337	1	SLC35F2	11	107673871	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1878597	107673871	27332645	979	25135											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108175446	108175446	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATM	NM_000051	exon37	c.T5541C	p.H1847H	GATTCATGATATT	.	47	20	70	0	.	3419	C	108175446	T	C	108175446	2	2	194	1	0	0	0	0	0	0	0	1	1109	1461	51	2		2	ATM	11	108175446	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	501575	108175446	26831070	980	25136											
C11orf65	160140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108253873	108253873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C11orf65	NM_152587	exon9	c.A817C	p.I273L	TATATATGTTTTT	.	64	23	78	0	.	91	G	108253873	T	G	108253873	3	3	194	1	0	0	0	0	1	0	0	0	1655	1464	51	5	128	5	C11orf65	11	108253873	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	78427	108253873	26752643	981	25137											
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115080321	115080321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADM1	NM_014333	exon8	c.A1051G	p.T351A	TGGTGGTGGTGGT	.	56	33	53	0	.	92	C	115080321	T	C	115080321	3	2	194	1	0	0	0	0	1	0	0	0	2566	1696	59	2	289	2	CADM1	11	115080321	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6826448	115080321	19926195	982	25138											
SIDT2	51092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117054562	117054562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIDT2	NM_001040455	exon7	c.G770A	p.G257E	CCTGCGGGGGCTC	.	44	21	81	0	.	90	A	117054562	G	A	117054562	3	1	194	1	0	0	0	0	1	0	0	0	14303	1232	43	3	796	3	SIDT2	11	117054562	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1974241	117054562	17951954	983	25139											
TMPRSS13	84000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117789167	117789167	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS13	NM_001206790	exon2	c.T408C	p.P136P	CCTGGCAGGAGAT	.	65	25	59	0	.	91	G	117789167	A	G	117789167	2	3	194	1	0	0	0	0	0	0	0	1	16242	175	7	2		2	TMPRSS13	11	117789167	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	734605	117789167	17217349	984	25140											
MCAM	4162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119185904	119185904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCAM	NM_006500	exon2	c.T137G	p.L46R	CACTTCAGAAGGG	.	19	10	36	0	.	137	C	119185904	A	C	119185904	3	2	194	1	0	0	0	0	1	0	0	0	9368	188	7	5	1863	5	MCAM	11	119185904	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1396737	119185904	15820612	985	25141											
ARHGEF12	23365	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120349051	120349051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF12	NM_015313	exon37	c.A3719T	p.H1240L	ATTCACACCTGCC	.	60	25	73	0	.	661	T	120349051	A	T	120349051	3	4	194	1	0	0	0	0	1	0	0	0	897	159	6	4	3865	4	ARHGEF12	11	120349051	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1163147	120349051	14657465	986	25142											
ZNF202	7753	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123599835	123599835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF202	NM_003455	exon6	c.A701G	p.Q234R	CACACCTGTGACA	.	33	9	29	0	.	91	C	123599835	T	C	123599835	3	2	194	1	0	0	0	0	1	0	0	0	17760	1594	55	2	1261	2	ZNF202	11	123599835	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3250784	123599835	11406681	987	25143											
OR4D5	219875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123811185	123811185	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4D5	NM_001001965	exon1	c.A862T	p.T288S	ATCTATACCCTGA	.	86	45	94	0	.	69	T	123811185	A	T	123811185	3	4	194	1	0	0	0	0	1	0	0	0	11057	391	14	4	864	4	OR4D5	11	123811185	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	211350	123811185	11195331	988	25144											
OR10G8	219869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123900744	123900744	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10G8	NM_001004464	exon1	c.T415A	p.S139T	GGGCGCTCGTGTA	.	241	142	180	2	.	92	A	123900744	T	A	123900744	3	1	194	1	0	0	0	0	1	0	0	0	10903	1551	54	4	417	4	OR10G8	11	123900744	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	89559	123900744	11105772	989	25145											
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	124310403	124310403	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8B8	NM_012378	exon1	c.T579A	p.Y193X	ATTCACATAGGTG	.	161	72	179	0	.	69	T	124310403	A	T	124310403	4	4	194	1	0	0	0	0	0	1	0	0	11230	224	8	4	359	4	OR8B8	11	124310403	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	409659	124310403	10696113	990	25146											
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125489978	125489978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STT3A	NM_152713	exon17	c.A2036G	p.E679G	TCCTGGAGGAAGC	.	84	32	98	0	.	90	G	125489978	A	G	125489978	3	3	194	1	0	0	0	0	1	0	0	0	15332	304	11	2	2098	2	STT3A	11	125489978	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1179575	125489978	9516538	991	25147											
ADAMTS8	11095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130278692	130278692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS8	NM_007037	exon7	c.A1894T	p.R632W	CGCTCCTCCCCCG	.	49	20	74	0	.	226	A	130278692	T	A	130278692	3	1	194	1	0	0	0	0	1	0	0	0	272	1550	54	4	787	4	ADAMTS8	11	130278692	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4788714	130278692	4727824	992	25148											
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130748331	130748331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNX19	NM_014758	exon11	c.G2965T	p.G989C	AGACACCCATCCT	.	81	40	116	0	.	229	A	130748331	C	A	130748331	3	1	194	1	0	0	0	0	1	0	0	0	14890	623	22	3	17	3	SNX19	11	130748331	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	469639	130748331	4258185	993	25149											
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133402212	133402212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OPCML	NM_001012393	exon1	c.A8G	p.H3R	GCAGGATGGTACA	.	47	19	63	0	.	93	C	133402212	T	C	133402212	3	2	194	1	0	0	0	0	1	0	0	0	10874	1464	51	2	1122	2	OPCML	11	133402212	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2653881	133402212	1604304	994	25150											
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134177095	134177095	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLB1L3	NM_001080407	exon10	c.T954C	p.D318D	TAAAGATGCAAAG	.	58	22	61	0	.	69	C	134177095	T	C	134177095	2	2	194	1	0	0	0	0	0	0	0	1	6430	1461	51	2		2	GLB1L3	11	134177095	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	774883	134177095	829421	995	25151											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	660161	660161	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon11	c.T1071C	p.D357D	GGTGGATGGGCTT	.	65	29	114	0	.	92	C	660161	T	C	660161	2	2	194	1	0	0	0	0	0	0	0	1	1268	1461	51	2		2	B4GALNT3	12	660161	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		660161	133191734	996	25152											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	662644	662644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon14	c.A1555G	p.S519G	AAACCCAGCCCTG	.	51	23	78	0	.	92	G	662644	A	G	662644	3	3	194	1	0	0	0	0	1	0	0	0	1268	188	7	2	1609	2	B4GALNT3	12	662644	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2483	662644	133189251	997	25153											
B4GALNT3	283358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	668524	668524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon19	c.G2825C	p.G942A	GGATTGGGGGCAT	.	168	72	173	1	.	92	C	668524	G	C	668524	3	2	194	1	0	0	0	0	1	0	0	0	1268	1232	43	4	2899	4	B4GALNT3	12	668524	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5880	668524	133183371	998	25154											
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1987485	1987485	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA2D4	NM_172364	exon16	c.C1715G	p.P572R	ACCAGGGGCCGGA	.	61	31	82	0	.	23	C	1987485	G	C	1987485	3	2	194	1	0	0	0	0	1	0	0	0	2551	1232	43	4	1790	4	CACNA2D4	12	1987485	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1318961	1987485	131864410	999	25155											
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	2027475	2027475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA2D4	NM_172364	exon1	c.G165T	p.W55C	CAGCAGCCACAGG	.	47	20	71	0	.	23	A	2027475	C	A	2027475	3	1	194	1	0	0	0	0	1	0	0	0	2551	740	26	3	3400	3	CACNA2D4	12	2027475	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	39990	2027475	131824420	1000	25156											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2909266	2909266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FKBP4	NM_002014	exon7	c.A824G	p.E275G	TGAAAGAGCGGGG	.	50	22	49	0	.	226	G	2909266	A	G	2909266	3	3	194	1	0	0	0	0	1	0	0	0	5910	304	11	2	850	2	FKBP4	12	2909266	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	881791	2909266	130942629	1001	25157											
KCNA1	3736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5021211	5021211	+	Missense_Mutation	SNP	A	A	C	rs146948558	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA1	NM_000217	exon2	c.A667C	p.I223L	TTCTTCATCGTGG	.	77	43	118	0	A|1.000;G|0.000	228	C	5021211	A	C	5021211	3	2	194	1	0	0	0	0	1	0	0	0	8001	217	8	5	669	5	KCNA1	12	5021211	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2111945	5021211	128830684	1002	25158											
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5154056	5154056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA5	NM_002234	exon1	c.C743T	p.S248F	CTGGGTCCGCGCG	.	38	19	23	0	.	715	T	5154056	C	T	5154056	3	4	194	1	0	0	0	0	1	0	0	0	8006	855	30	3	745	3	KCNA5	12	5154056	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	132845	5154056	128697839	1003	25159											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6140731	6140731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWF	NM_000552	exon21	c.G2699A	p.S900N	GGGTTACTGCCGC	.	78	43	84	0	.	163	T	6140731	C	T	6140731	3	4	194	1	0	0	0	0	1	0	0	0	17243	565	20	3	5870	3	VWF	12	6140731	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	986675	6140731	127711164	1004	25160											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6143964	6143964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWF	NM_000552	exon20	c.A2575G	p.T859A	GGTCTGTGCAGTT	.	79	40	116	0	.	163	C	6143964	T	C	6143964	3	2	194	1	0	0	0	0	1	0	0	0	17243	1696	59	2	5998	2	VWF	12	6143964	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3233	6143964	127707931	1005	25161											
USP5	8078	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6974028	6974028	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP5	NM_001098536	exon18	c.A2387T	p.D796V	TCCGGGATGGTCC	.	30	9	32	0	.	659	T	6974028	A	T	6974028	3	4	194	1	0	0	0	0	1	0	0	0	17078	333	12	4	2457	4	USP5	12	6974028	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	830064	6974028	126877867	1006	25162											
CLEC2B	9976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10005916	10005916	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLEC2B	NM_005127	exon5	c.A433T	p.R145W	TTTTCCTGCAAAT	.	59	29	51	0	.	90	A	10005916	T	A	10005916	3	1	194	1	0	0	0	0	1	0	0	0	3507	1579	55	4	20	4	CLEC2B	12	10005916	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3031888	10005916	123845979	1007	25163											
TAS2R7	50837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10954328	10954328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAS2R7	NM_023919	exon1	c.A842G	p.H281R	AATGAATGACTTG	.	104	43	133	0	.	91	C	10954328	T	C	10954328	3	2	194	1	0	0	0	0	1	0	0	0	15583	1464	51	2	118	2	TAS2R7	12	10954328	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	948412	10954328	122897567	1008	25164											
GPRC5A	9052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13061653	13061653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPRC5A	NM_003979	exon2	c.T470C	p.M157T	TGACCATGAATAG	.	64	34	81	0	.	90	C	13061653	T	C	13061653	3	2	194	1	0	0	0	0	1	0	0	0	6724	1464	51	2	472	2	GPRC5A	12	13061653	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2107325	13061653	120790242	1009	25165											
HEBP1	50865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13140219	13140219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEBP1	NM_015987	exon3	c.A265T	p.N89Y	CTTCATTGGGGAA	.	126	53	127	0	.	135	A	13140219	T	A	13140219	3	1	194	1	0	0	0	0	1	0	0	0	7036	1812	63	4	312	4	HEBP1	12	13140219	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	78566	13140219	120711676	1010	25166											
ART4	420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14993397	14993397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ART4	NM_021071	exon2	c.A835G	p.N279D	GACAGTTATATGT	.	49	21	57	0	.	90	C	14993397	T	C	14993397	3	2	194	1	0	0	0	0	1	0	0	0	999	1754	61	2	117	2	ART4	12	14993397	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1853178	14993397	118858498	1011	25167											
OVCH1	341350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29580582	29580582	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OVCH1	NM_183378	exon29	c.3328-1C>A	.	CATACTGTGAGAA	.	27	9	34	0	.	210	T	29580582	G	T	29580582	5	4	194	1	0	0	0	0	0	0	1	0	11323	1391	48	3	81	3	OVCH1	12	29580582	Splice_Site	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	14587185	29580582	104271313	1012	25168											
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33532888	33532888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT10	NM_198992	exon6	c.A1379G	p.H460R	TCATTGTGTCCTA	.	68	35	93	0	.	92	C	33532888	T	C	33532888	3	2	194	1	0	0	0	0	1	0	0	0	15463	1696	59	2	200	2	SYT10	12	33532888	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3952306	33532888	100319007	1013	25169											
ALG10B	144245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	38710709	38710709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALG10B	NM_001013620	exon1	c.A14G	p.E5G	AGCTAGAGGGTTA	.	64	27	61	1	.	93	G	38710709	A	G	38710709	3	3	194	1	0	0	0	0	1	0	0	0	512	304	11	2	16	2	ALG10B	12	38710709	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5177821	38710709	95141186	1014	25170											
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	39727052	39727052	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF21A	NM_001173464	exon18	c.A2449T	p.R817X	GGTTTCTTTTTTG	.	126	41	111	0	.	97	A	39727052	T	A	39727052	4	1	194	1	0	0	0	0	0	1	0	0	8288	1617	56	4	2659	4	KIF21A	12	39727052	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1016343	39727052	94124843	1015	25171											
ABCD2	225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40010969	40010969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCD2	NM_005164	exon2	c.T941A	p.V314E	ATTTCTACCTATA	.	71	34	71	0	.	95	T	40010969	A	T	40010969	3	4	194	1	0	0	0	0	1	0	0	0	61	405	14	4	1317	4	ABCD2	12	40010969	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	283917	40010969	93840926	1016	25172											
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45105173	45105173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NELL2	NM_001145107	exon12	c.A1241T	p.Q414L	ATGGTCTGGTCCT	.	83	23	75	0	.	517	A	45105173	T	A	45105173	3	1	194	1	0	0	0	0	1	0	0	0	10334	1580	55	4	1399	4	NELL2	12	45105173	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5094204	45105173	88746722	1017	25173											
SLC38A2	54407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46760941	46760941	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC38A2	NM_018976	exon6	c.A399G	p.L133L	TTCATATAATAAA	.	150	16	183	0	.	226	C	46760941	T	C	46760941	2	2	194	1	0	0	0	0	0	0	0	1	14604	1403	49	2		2	SLC38A2	12	46760941	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1655768	46760941	87090954	1018	25174											
OR8S1	341568	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48919702	48919702	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8S1	NM_001005203	exon1	c.C288G	p.G96G	AGAGGGCTGCCTG	.	41	17	73	1	.	69	G	48919702	C	G	48919702	2	3	194	1	0	0	0	0	0	0	0	1	11246	784	28	4		4	OR8S1	12	48919702	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2158761	48919702	84932193	1019	25175											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49420043	49420043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLL2	NM_003482	exon48	c.A15706C	p.N5236H	GCCCGTTGTTCTC	.	94	45	98	0	.	612	G	49420043	T	G	49420043	3	3	194	1	0	0	0	0	1	0	0	0	9621	1812	63	5	935	5	MLL2	12	49420043	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	500341	49420043	84431852	1020	25176											
TUBA1C	84790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49666554	49666554	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUBA1C	NM_032704	exon4	c.A894T	p.P298P	TGAGCCAGCCAAC	.	190	105	233	0	.	90	T	49666554	A	T	49666554	2	4	194	1	0	0	0	0	0	0	0	1	16742	175	7	4		4	TUBA1C	12	49666554	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	246511	49666554	84185341	1021	25177											
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50294962	50294962	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAIM2	NM_012306	exon2	c.A162T	p.P54P	GGGGGCTGGGGGG	.	33	12	23	0	.	230	A	50294962	T	A	50294962	2	1	194	1	0	0	0	0	0	0	0	1	5376	1567	55	4		4	FAIM2	12	50294962	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	628408	50294962	83556933	1022	25178											
TFCP2	7024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51492562	51492562	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TFCP2	NM_001173452	exon13	c.T1416C	p.D472D	TACCTCATCACTG	.	55	24	46	0	.	91	G	51492562	A	G	51492562	2	3	194	1	0	0	0	0	0	0	0	1	15792	214	8	2		2	TFCP2	12	51492562	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1197600	51492562	82359333	1023	25179											
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51865212	51865212	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC4A8	NM_001039960	exon14	c.A1800G	p.L600L	CTCCCTAATTTGC	.	59	23	61	0	.	95	G	51865212	A	G	51865212	2	3	194	1	0	0	0	0	0	0	0	1	14659	349	13	2		2	SLC4A8	12	51865212	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	372650	51865212	81986683	1024	25180											
KRT81	3887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52682242	52682242	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT81	NM_002281	exon5	c.640-2A>G	.	ACATCCTGGAAAG	.	84	39	88	0	.	90	C	52682242	T	C	52682242	5	2	194	1	0	0	0	0	0	0	1	0	8495	1594	55	2	903	2	KRT81	12	52682242	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	817030	52682242	81169653	1025	25181											
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52698804	52698804	+	Missense_Mutation	SNP	A	A	G	rs202150817		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT86	NM_002284	exon4	c.A728G	p.Y243C	GGCTGTATGAGGA	.	57	24	77	0	A|0.999;G|0.000	91	G	52698804	A	G	52698804	3	3	194	1	0	0	0	0	1	0	0	0	8500	449	16	2	742	2	KRT86	12	52698804	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	16562	52698804	81153091	1026	25182											
KRT6C	286887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52862953	52862953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT6C	NM_173086	exon9	c.A1588T	p.S530C	CACTGCTGGAACT	.	122	56	133	0	.	114	A	52862953	T	A	52862953	3	1	194	1	0	0	0	0	1	0	0	0	8482	1580	55	4	110	4	KRT6C	12	52862953	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	164149	52862953	80988942	1027	25183											
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52979933	52979933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT72	NM_001146225	exon9	c.G1369T	p.G457W	CTGCCCCAGCATT	.	51	24	58	0	.	96	A	52979933	C	A	52979933	3	1	194	1	0	0	0	0	1	0	0	0	8485	594	21	3	170	3	KRT72	12	52979933	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	116980	52979933	80871962	1028	25184											
KRT73	319101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53010081	53010081	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT73	NM_175068	exon2	c.T531C	p.N177N	CAGGTTATTCTTG	.	88	49	121	0	.	157	G	53010081	A	G	53010081	2	3	194	1	0	0	0	0	0	0	0	1	8486	446	16	2		2	KRT73	12	53010081	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	30148	53010081	80841814	1029	25185											
KRT1	3848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53069400	53069400	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT1	NM_006121	exon9	c.T1512G	p.S504S	GCTCACAGCTGCA	.	66	36	88	1	.	92	C	53069400	A	C	53069400	2	2	194	1	0	0	0	0	0	0	0	1	8447	202	7	5		5	KRT1	12	53069400	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	59319	53069400	80782495	1030	25186											
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53086355	53086355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT77	NM_175078	exon7	c.A1277G	p.Q426R	AGCTTCTGCCACG	.	43	21	43	0	.	187	C	53086355	T	C	53086355	3	2	194	1	0	0	0	0	1	0	0	0	8490	1580	55	2	471	2	KRT77	12	53086355	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	16955	53086355	80765540	1031	25187											
KRT3	3850	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53189820	53189820	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT3	NM_057088	exon1	c.A7T	p.R3X	CTTGTCTGCTCAT	.	19	6	33	0	.	90	A	53189820	T	A	53189820	4	1	194	1	0	0	0	0	0	1	0	0	8466	1588	55	4	1915	4	KRT3	12	53189820	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	103465	53189820	80662075	1032	25188											
SOAT2	8435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53515148	53515148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOAT2	NM_003578	exon12	c.A1199G	p.D400G	TCCATGACTGGCT	.	92	34	91	0	.	91	G	53515148	A	G	53515148	3	3	194	1	0	0	0	0	1	0	0	0	14911	275	10	2	1245	2	SOAT2	12	53515148	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	325328	53515148	80336747	1033	25189											
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53605571	53605571	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RARG	NM_000966	exon10	c.C1254G	p.N418K	TTCAGGGTTCTCC	.	30	12	39	0	.	722	C	53605571	G	C	53605571	3	2	194	1	0	0	0	0	1	0	0	0	13054	1252	44	4	114	4	RARG	12	53605571	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	90423	53605571	80246324	1034	25190											
HOXC10	3226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54379618	54379618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXC10	NM_017409	exon1	c.T575A	p.L192Q	CTCAGCTGGGGGG	.	77	41	128	0	.	91	A	54379618	T	A	54379618	3	1	194	1	0	0	0	0	1	0	0	0	7309	1580	55	4	577	4	HOXC10	12	54379618	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	774047	54379618	79472277	1035	25191											
NEUROD4	58158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55421151	55421151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEUROD4	NM_021191	exon2	c.G928T	p.D310Y	CCTATAGACATGT	.	79	37	85	0	.	94	T	55421151	G	T	55421151	3	4	194	1	0	0	0	0	1	0	0	0	10350	942	33	3	930	3	NEUROD4	12	55421151	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1041533	55421151	78430744	1036	25192											
OR6C3	254786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55726148	55726148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6C3	NM_054104	exon1	c.A664G	p.I222V	AGGACCATTTTGA	.	75	24	89	0	.	69	G	55726148	A	G	55726148	3	3	194	1	0	0	0	0	1	0	0	0	11192	217	8	2	666	2	OR6C3	12	55726148	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	304997	55726148	78125747	1037	25193											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56827889	56827889	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TIMELESS	NM_003920	exon2	c.A66G	p.G22G	AGTGTCTCCCTCC	.	96	38	147	0	.	159	C	56827889	T	C	56827889	2	2	194	1	0	0	0	0	0	0	0	1	15901	1538	54	2		2	TIMELESS	12	56827889	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1101741	56827889	77024006	1038	25194											
TAC3	6866	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57407370	57407370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAC3	NM_013251	exon3	c.C200A	p.A67D	GTGCTAGCCTGGC	.	43	19	48	0	.	92	T	57407370	G	T	57407370	3	4	194	1	0	0	0	0	1	0	0	0	15496	971	34	3	181	3	TAC3	12	57407370	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	579481	57407370	76444525	1039	25195											
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57970570	57970570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF5A	NM_004984	exon20	c.T2225A	p.L742Q	TAGAGCTAGAGAA	.	61	25	72	0	.	517	A	57970570	T	A	57970570	3	1	194	1	0	0	0	0	1	0	0	0	8305	1522	53	4	2303	4	KIF5A	12	57970570	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	563200	57970570	75881325	1040	25196											
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58001020	58001020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DTX3	NM_178502	exon5	c.T374A	p.L125H	CCCCTCTCCGAGC	.	44	21	50	0	.	1083	A	58001020	T	A	58001020	3	1	194	1	0	0	0	0	1	0	0	0	4795	1551	54	4	380	4	DTX3	12	58001020	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	30450	58001020	75850875	1041	25197											
AGAP2	116986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58121778	58121778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGAP2	NM_001122772	exon15	c.A2708T	p.Q903L	ATGGCCTGGACCC	.	59	26	49	0	.	716	A	58121778	T	A	58121778	3	1	194	1	0	0	0	0	1	0	0	0	368	1580	55	4	890	4	AGAP2	12	58121778	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	120758	58121778	75730117	1042	25198											
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63083571	63083571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPM1H	NM_020700	exon8	c.A1153G	p.T385A	CAATAGTTGCCAT	.	52	22	62	0	.	637	C	63083571	T	C	63083571	3	2	194	1	0	0	0	0	1	0	0	0	12341	1725	60	2	403	2	PPM1H	12	63083571	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4961793	63083571	70768324	1043	25199											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	67703830	67703830	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAND1	NM_018448	exon12	c.A3175T	p.R1059X	AAAGTTAGAAAGG	.	112	44	121	0	.	516	T	67703830	A	T	67703830	4	4	194	1	0	0	0	0	0	1	0	0	2615	412	15	4	3221	4	CAND1	12	67703830	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4620259	67703830	66148065	1044	25200											
YEATS4	8089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69759665	69759665	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	YEATS4	NM_006530	exon4	c.333+1G>T	.	AGACCTGTGAGTA	.	263	99	257	0	.	226	T	69759665	G	T	69759665	5	4	194	1	0	0	0	0	0	0	1	0	17470	1391	48	3	348	3	YEATS4	12	69759665	Splice_Site	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2055835	69759665	64092230	1045	25201											
LRRC10	376132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70004105	70004105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC10	NM_201550	exon1	c.A514G	p.I172V	GCCAGATGGTCCT	.	48	21	44	0	.	514	C	70004105	T	C	70004105	3	2	194	1	0	0	0	0	1	0	0	0	8967	1464	51	2	323	2	LRRC10	12	70004105	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	244440	70004105	63847790	1046	25202											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70983979	70983979	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRB	NM_001109754	exon8	c.1815delT	p.N605fs	GCCATTATTGTTT	.	112	38	153	0	.	226	-	70983979	A	-	70983979	7	5	194	1	0	1	0	1	0	0	0	0	12796	446	16	0	4940	0	PTPRB	12	70983979	Frame_Shift_Del	DEL	A	TCGA-UB-A7MB-01A-11D-A33Q-10	979874	70983979	62867916	1047	25203											
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	73012775	73012775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRHDE	NM_013381	exon13	c.T2291C	p.L764P	ATCCTCTAGATAA	.	254	120	295	0	.	93	C	73012775	T	C	73012775	3	2	194	1	0	0	0	0	1	0	0	0	16476	1522	53	2	2341	2	TRHDE	12	73012775	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2028796	73012775	60839120	1048	25204											
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75692738	75692738	+	Missense_Mutation	SNP	C	C	T	rs200022333		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon11	c.G920A	p.R307H	GCATCACGTCCAT	.	71	27	91	0	C|0.999;T|0.000	92	T	75692738	C	T	75692738	3	4	194	1	0	0	0	0	1	0	0	0	2638	536	19	1	785	1	CAPS2	12	75692738	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2679963	75692738	58159157	1049	25205											
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75716791	75716791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon5	c.G311T	p.C104F	GTTTGACATGGTG	.	278	95	282	0	.	92	A	75716791	C	A	75716791	3	1	194	1	0	0	0	0	1	0	0	0	2638	478	17	3	1418	3	CAPS2	12	75716791	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	24053	75716791	58135104	1050	25206											
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75720286	75720286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon2	c.G50C	p.G17A	TGAGTTCCTGTGT	.	53	14	69	0	.	92	G	75720286	C	G	75720286	3	3	194	1	0	0	0	0	1	0	0	0	2638	855	30	4	1691	4	CAPS2	12	75720286	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3495	75720286	58131609	1051	25207											
GLIPR1L1	256710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75728612	75728612	+	Missense_Mutation	SNP	A	A	T	rs143627655	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLIPR1L1	NM_152779	exon1	c.A104T	p.D35V	TTATAGACAACTG	.	107	48	109	0	A|0.999;G|0.001	90	T	75728612	A	T	75728612	3	4	194	1	0	0	0	0	1	0	0	0	6442	275	10	4	106	4	GLIPR1L1	12	75728612	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8326	75728612	58123283	1052	25208											
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86373569	86373569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MGAT4C	NM_013244	exon7	c.T935A	p.M312K	TAGCCCATGTGCT	.	68	24	81	0	.	93	T	86373569	A	T	86373569	3	4	194	1	0	0	0	0	1	0	0	0	9547	217	8	4	505	4	MGAT4C	12	86373569	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10644957	86373569	47478326	1053	25209											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88513944	88513944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP290	NM_025114	exon15	c.A1469G	p.E490G	TTCAATTCAAGTT	.	275	119	311	0	.	96	C	88513944	T	C	88513944	3	2	194	1	0	0	0	0	1	0	0	0	3253	1783	62	2	6130	2	CEP290	12	88513944	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2140375	88513944	45337951	1054	25210											
LUM	4060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	91502590	91502590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LUM	NM_002345	exon2	c.T167A	p.L56Q	AATTTCAGCTCAT	.	59	24	82	0	.	514	T	91502590	A	T	91502590	3	4	194	1	0	0	0	0	1	0	0	0	9085	188	7	4	857	4	LUM	12	91502590	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2988646	91502590	42349305	1055	25211											
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93804888	93804888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2N	NM_003348	exon2	c.C218T	p.T73I	ATTTTGGTCATGA	.	186	84	195	0	.	659	A	93804888	G	A	93804888	3	1	194	1	0	0	0	0	1	0	0	0	16863	1261	44	3	252	3	UBE2N	12	93804888	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2302298	93804888	40047007	1056	25212											
METAP2	10988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95905678	95905678	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METAP2	NM_006838	exon9	c.A972C	p.P324P	GAAACCAATCCGT	.	55	17	69	0	.	90	C	95905678	A	C	95905678	2	2	194	1	0	0	0	0	0	0	0	1	9487	117	5	5		5	METAP2	12	95905678	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2100790	95905678	37946217	1057	25213											
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101018227	101018227	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GAS2L3	NM_174942	exon10	c.A1644C	p.P548P	AAAGCCAGTCCCA	.	95	37	102	0	.	227	C	101018227	A	C	101018227	2	2	194	1	0	0	0	0	0	0	0	1	6248	175	7	5		5	GAS2L3	12	101018227	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5112549	101018227	32833668	1058	25214											
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101551063	101551063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC5A8	NM_145913	exon15	c.T1827A	p.R609R	TCACAAACGAGTC	.	73	8	101	0	.	90	T	101551063	A	T	101551063	2	4	194	1	0	0	0	0	0	0	0	1	14671	30	2	4		4	SLC5A8	12	101551063	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	532836	101551063	32300832	1059	25215											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	104107485	104107485	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAB2	NM_017564	exon42	c.C4476A	p.T1492T	AACCACCCCAGGA	.	93	36	89	0	.	104	A	104107485	C	A	104107485	2	1	194	1	0	0	0	0	0	0	0	1	15237	610	22	3		3	STAB2	12	104107485	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2556422	104107485	29744410	1060	25216											
APPL2	55198	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105605024	105605024	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APPL2	NM_018171	exon5	c.A357T	p.R119R	CTTTTCTCGGAAT	.	56	28	84	1	.	91	A	105605024	T	A	105605024	2	1	194	1	0	0	0	0	0	0	0	1	818	1538	54	4		4	APPL2	12	105605024	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1497539	105605024	28246871	1061	25217											
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106734764	106734764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCP11L2	NM_152772	exon9	c.T1303A	p.W435R	CCTATCTGGTCCT	.	66	39	81	0	.	93	A	106734764	T	A	106734764	3	1	194	1	0	0	0	0	1	0	0	0	15712	1580	55	4	1333	4	TCP11L2	12	106734764	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1129740	106734764	27117131	1062	25218											
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109286766	109286766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DAO	NM_001917	exon6	c.A461T	p.E154V	TAACTGAGAGGGG	.	53	21	68	0	.	92	T	109286766	A	T	109286766	3	4	194	1	0	0	0	0	1	0	0	0	4231	304	11	4	479	4	DAO	12	109286766	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2552002	109286766	24565129	1063	25219											
TCTN1	79600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111066600	111066600	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCTN1	NM_024549	exon4	c.A501G	p.P167P	TAATCCAGAAGTA	.	43	23	47	0	.	90	G	111066600	A	G	111066600	2	3	194	1	0	0	0	0	0	0	0	1	15719	175	7	2		2	TCTN1	12	111066600	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1779834	111066600	22785295	1064	25220											
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113557018	113557018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASAL1	NM_004658	exon8	c.T557A	p.L186Q	TCCCGCAGCTCCA	.	50	22	63	0	.	229	T	113557018	A	T	113557018	3	4	194	1	0	0	0	0	1	0	0	0	13063	188	7	4	1917	4	RASAL1	12	113557018	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2490418	113557018	20294877	1065	25221											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117680507	117680507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOS1	NM_001204218	exon21	c.T3068C	p.L1023P	TTGGATAGACCTG	.	60	31	76	0	.	154	G	117680507	A	G	117680507	3	3	194	1	0	0	0	0	1	0	0	0	10541	420	15	2	1378	2	NOS1	12	117680507	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4123489	117680507	16171388	1066	25222											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117703310	117703310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOS1	NM_000620	exon12	c.C1947A	p.D649E	CACTTTGTCACTC	.	52	26	50	0	.	154	T	117703310	G	T	117703310	3	4	194	1	0	0	0	0	1	0	0	0	10541	1368	48	3	2429	3	NOS1	12	117703310	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	22803	117703310	16148585	1067	25223											
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118298200	118298200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KSR2	NM_173598	exon2	c.T130C	p.C44R	TTTTGCAGGACAG	.	34	17	43	0	.	1449	G	118298200	A	G	118298200	3	3	194	1	0	0	0	0	1	0	0	0	8582	188	7	2	2711	2	KSR2	12	118298200	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	594890	118298200	15553695	1068	25224											
SRRM4	84530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119568581	119568581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon8	c.C713A	p.S238Y	CCCAGTCCAGTCG	.	25	7	21	0	.	2	A	119568581	C	A	119568581	3	1	194	1	0	0	0	0	1	0	0	0	15170	855	30	3	743	3	SRRM4	12	119568581	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1270381	119568581	14283314	1069	25225											
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119588876	119588876	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon10	c.C1131A	p.V377V	TTTGGTCCCATCC	.	92	42	86	0	.	2	A	119588876	C	A	119588876	2	1	194	1	0	0	0	0	0	0	0	1	15170	842	30	3		3	SRRM4	12	119588876	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	20295	119588876	14263019	1070	25226											
SRRM4	84530	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	119594391	119594391	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon13	c.A1624T	p.S542C	AGCAGTAGCCGCT	.	109	53	136	1	.	2	T	119594391	A	T	119594391	3	4	194	1	0	0	0	0	1	0	0	0	15170	420	15	4	1674	4	SRRM4	12	119594391	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5515	119594391	14257504	1071	25227											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120594786	120594786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GCN1L1	NM_006836	exon27	c.A3098T	p.E1033V	AGCAACTCCGGGC	.	56	18	73	0	.	94	A	120594786	T	A	120594786	3	1	194	1	0	0	0	0	1	0	0	0	6299	1551	54	4	5045	4	GCN1L1	12	120594786	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1000395	120594786	13257109	1072	25228											
COX6A1	1337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120875944	120875944	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COX6A1	NM_004373	exon1	c.T15C	p.G5G	AGTTGGTGTGTCC	.	37	20	58	0	.	90	C	120875944	T	C	120875944	2	2	194	1	0	0	0	0	0	0	0	1	3774	1683	59	2		2	COX6A1	12	120875944	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	281158	120875944	12975951	1073	25229											
CABP1	9478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121098923	121098923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CABP1	NM_001033677	exon5	c.C989A	p.A330D	GAGAGGCTATGAG	.	96	31	107	1	.	90	A	121098923	C	A	121098923	3	1	194	1	0	0	0	0	1	0	0	0	2531	797	28	3	1240	3	CABP1	12	121098923	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	222979	121098923	12752972	1074	25230											
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123498472	123498472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PITPNM2	NM_020845	exon3	c.G196T	p.G66C	GCATGCCCACATG	.	72	30	80	0	.	228	A	123498472	C	A	123498472	3	1	194	1	0	0	0	0	1	0	0	0	11951	623	22	3	3945	3	PITPNM2	12	123498472	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2399549	123498472	10353423	1075	25231											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	124285839	124285839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH10	NM_207437	exon15	c.G2120A	p.G707E	CAGCTGGGATACA	.	74	38	76	0	.	95	A	124285839	G	A	124285839	3	1	194	1	0	0	0	0	1	0	0	0	4598	1232	43	3	2178	3	DNAH10	12	124285839	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	787367	124285839	9566056	1076	25232											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124383215	124383215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH10	NM_207437	exon55	c.T9140A	p.L3047Q	AGCGTCTGGATGG	.	92	44	92	0	.	95	A	124383215	T	A	124383215	3	1	194	1	0	0	0	0	1	0	0	0	4598	1580	55	4	9358	4	DNAH10	12	124383215	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	97376	124383215	9468680	1077	25233											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124886995	124886995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCOR2	NM_006312	exon16	c.A1595T	p.E532V	TCCTCCTCCTTCT	.	56	26	70	0	.	229	A	124886995	T	A	124886995	3	1	194	1	0	0	0	0	1	0	0	0	10236	1551	54	4	6109	4	NCOR2	12	124886995	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	503780	124886995	8964900	1078	25234											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184613	130184613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM132D	NM_133448	exon2	c.G710T	p.G237V	CAGTCCCCTCTCT	.	97	39	81	0	.	106	A	130184613	C	A	130184613	3	1	194	1	0	0	0	0	1	0	0	0	16044	623	22	3	2621	3	TMEM132D	12	130184613	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5297618	130184613	3667282	1079	25235											
MPHOSPH8	54737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20220900	20220900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MPHOSPH8	NM_017520	exon3	c.A687T	p.K229N	AAAGAAAGTTAAA	.	152	57	169	0	.	68	T	20220900	A	T	20220900	3	4	194	1	0	0	0	0	1	0	0	0	9727	69	3	4	697	4	MPHOSPH8	13	20220900	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		20220900	94948978	1080	25236											
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	22113457	22113457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFHA1	NM_152726	exon4	c.A450T	p.R150S	AAGGTCTCTGAAA	.	182	84	197	0	.	90	A	22113457	T	A	22113457	3	1	194	1	0	0	0	0	1	0	0	0	4943	1548	54	4	890	4	EFHA1	13	22113457	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1892557	22113457	93056421	1081	25237											
SGCG	6445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	23898515	23898515	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGCG	NM_000231	exon8	c.T711A	p.L237L	TGTGCTTGATGCT	.	38	17	48	0	.	90	A	23898515	T	A	23898515	2	1	194	1	0	0	0	0	0	0	0	1	14203	1799	63	4		4	SGCG	13	23898515	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1785058	23898515	91271363	1082	25238											
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	13	26349095	26349095	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ATP8A2,arm,malignant_melanoma,-2	ATP8A2	NM_016529	exon27	c.G2677T	p.E893X	ATTATTGAGGTAA	.	38	12	49	1	.	138	T	26349095	G	T	26349095	4	4	194	1	0	0	0	0	0	1	0	0	1193	1291	45	3	2783	3	ATP8A2	13	26349095	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2450580	26349095	88820783	1083	25239											
CDX2	1045	broad.mit.edu;mdanderson.org	37	13	28542995	28542995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDX2	NM_001265	exon1	c.C149A	p.A50E	GCCGCTGCAGCTG	.	13	7	11	0	.	658	T	28542995	G	T	28542995	3	4	194	1	0	0	0	0	1	0	0	0	3183	1319	46	3	804	3	CDX2	13	28542995	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2193900	28542995	86626883	1084	25240											
FLT3	2322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28601380	28601380	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLT3	NM_004119	exon18	c.2054-2A>G	.	TGGTCCTGAAATA	.	52	29	67	0	.	42117	C	28601380	T	C	28601380	5	2	194	1	0	0	0	0	0	0	1	0	5942	1594	55	2	961	2	FLT3	13	28601380	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	58385	28601380	86568498	1085	25241											
B3GALTL	145173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	31789221	31789221	+	Missense_Mutation	SNP	A	A	G	rs112402968		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GALTL	NM_194318	exon2	c.A104G	p.E35G	AGAAAGAGGTCAA	.	28	15	53	1	A|0.500;G|0.500	92	G	31789221	A	G	31789221	3	3	194	1	0	0	0	0	1	0	0	0	1252	304	11	2	110	2	B3GALTL	13	31789221	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3187841	31789221	83380657	1086	25242											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32812069	32812069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRY	NM_023037	exon44	c.A6364T	p.S2122C	CTCTTCAGTCTGC	.	55	27	88	0	.	142	T	32812069	A	T	32812069	3	4	194	1	0	0	0	0	1	0	0	0	6063	188	7	4	6538	4	FRY	13	32812069	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1022848	32812069	82357809	1087	25243											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32841436	32841436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRY	NM_023037	exon55	c.G8076C	p.M2692I	GCTTATGTGTGAC	.	36	15	51	0	.	142	C	32841436	G	C	32841436	3	2	194	1	0	0	0	0	1	0	0	0	6063	1377	48	4	8294	4	FRY	13	32841436	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	29367	32841436	82328442	1088	25244											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35731383	35731383	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBEA	NM_015678	exon21	c.T2820C	p.D940D	GGTGGATACCCTC	.	61	19	58	0	.	144	C	35731383	T	C	35731383	2	2	194	1	0	0	0	0	0	0	0	1	10187	1403	49	2		2	NBEA	13	35731383	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2889947	35731383	79438495	1089	25245											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262741	39262741	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM2	NM_207361	exon1	c.A1260T	p.A420A	AGGAGCAGCTTCA	.	60	28	77	0	.	100	T	39262741	A	T	39262741	2	4	194	1	0	0	0	0	0	0	0	1	6045	175	7	4		4	FREM2	13	39262741	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3531358	39262741	75907137	1090	25246											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39357294	39357294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM2	NM_207361	exon5	c.T5729A	p.V1910E	GAGATGTGAGCCA	.	103	42	104	0	.	100	A	39357294	T	A	39357294	3	1	194	1	0	0	0	0	1	0	0	0	6045	1696	59	4	5747	4	FREM2	13	39357294	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	94553	39357294	75812584	1091	25247											
LRCH1	23143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47302989	47302989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRCH1	NM_001164211	exon18	c.A1877G	p.E626G	GCATTGAGATGAG	.	58	23	81	0	.	91	G	47302989	A	G	47302989	3	3	194	1	0	0	0	0	1	0	0	0	8932	304	11	2	1947	2	LRCH1	13	47302989	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7945695	47302989	67866889	1092	25248											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48953748	48953748	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RB1	NM_000321	exon14	c.1351delC	p.R451fs	GGAGTTCGCTTGT	.	212	191	277	0	.	3784	-	48953748	C	-	48953748	7	5	194	1	0	1	0	1	0	0	0	0	13098	884	31	0	1405	0	RB1	13	48953748	Frame_Shift_Del	DEL	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1650759	48953748	66216130	1093	25249											
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49030437	49030437	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RB1	NM_000321	exon19	c.A1912T	p.T638S	TTCCAGACCCAGA	.	275	116	279	0	.	3784	T	49030437	A	T	49030437	3	4	194	1	0	0	0	0	1	0	0	0	13098	275	10	4	1986	4	RB1	13	49030437	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	76689	49030437	66139441	1094	25250											
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49781371	49781371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FNDC3A	NM_001079673	exon26	c.A3437T	p.Q1146L	TCTCTCAGAGGAC	.	136	126	158	0	.	278	T	49781371	A	T	49781371	3	4	194	1	0	0	0	0	1	0	0	0	5969	188	7	4	3546	4	FNDC3A	13	49781371	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	750934	49781371	65388507	1095	25251											
INTS6	26512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52025248	52025248	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INTS6	NM_001039938	exon3	c.A252T	p.G84G	CGTAAGTCCTTCA	.	99	45	113	1	.	227	A	52025248	T	A	52025248	2	1	194	1	0	0	0	0	0	0	0	1	7782	1654	58	4		4	INTS6	13	52025248	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2243877	52025248	63144630	1096	25252											
NEK5	341676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52676261	52676261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEK5	NM_199289	exon10	c.A777C	p.L259F	ATTCTCTAAAAAG	.	233	102	230	0	.	334	G	52676261	T	G	52676261	3	3	194	1	0	0	0	0	1	0	0	0	10327	1519	53	5	1401	5	NEK5	13	52676261	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	651013	52676261	62493617	1097	25253											
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53227239	53227239	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUGT1	NM_001130912	exon2	c.96+1G>A	.	TTAGAGGTGAGAG	.	69	23	84	0	.	226	A	53227239	G	A	53227239	5	1	194	1	0	0	0	0	0	0	1	0	15368	1275	44	3	103	3	SUGT1	13	53227239	Splice_Site	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	550978	53227239	61942639	1098	25254											
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	60490362	60490362	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIAPH3	NM_001042517	exon19	c.G2192C	p.R731P	GGCACCCGAAAAG	.	66	32	81	0	.	516	G	60490362	C	G	60490362	3	3	194	1	0	0	0	0	1	0	0	0	4520	652	23	4	1449	4	DIAPH3	13	60490362	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7263123	60490362	54679516	1099	25255											
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	70535471	70535471	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL1	NM_020866	exon3	c.T786C	p.A262A	CCAGAGAGCATTG	.	77	29	92	0	.	90	G	70535471	A	G	70535471	2	3	194	1	0	0	0	0	0	0	0	1	8365	291	11	2		2	KLHL1	13	70535471	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10045109	70535471	44634407	1100	25256											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77844588	77844588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCBP2	NM_015057	exon6	c.G1031A	p.G344D	TTAATGCCATTAC	.	148	62	155	0	.	236	T	77844588	C	T	77844588	3	4	194	1	0	0	0	0	1	0	0	0	10018	739	26	3	13317	3	MYCBP2	13	77844588	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7309117	77844588	37325290	1101	25257											
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	88330290	88330290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLITRK5	NM_015567	exon2	c.A2647C	p.S883R	CCGTGCAGCCCCG	.	132	58	139	0	.	94	C	88330290	A	C	88330290	3	2	194	1	0	0	0	0	1	0	0	0	14746	188	7	5	2649	5	SLITRK5	13	88330290	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10485702	88330290	26839588	1102	25258											
ITGBL1	9358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102250520	102250520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGBL1	NM_004791	exon7	c.T886G	p.C296G	TGTAATTGCGGAA	.	56	50	65	0	.	92	G	102250520	T	G	102250520	3	3	194	1	0	0	0	0	1	0	0	0	7902	1812	63	5	912	5	ITGBL1	13	102250520	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	13920230	102250520	12919358	1103	25259											
GRK1	6011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114324036	114324036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRK1	NM_002929	exon2	c.T734A	p.V245E	TGAAAGTACACAG	.	55	32	58	0	.	614	A	114324036	T	A	114324036	3	1	194	1	0	0	0	0	1	0	0	0	6790	1638	57	4	740	4	GRK1	13	114324036	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	12073516	114324036	845842	1104	25260											
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20344887	20344887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4K2	NM_001005501	exon1	c.T461C	p.M154T	GAGTTATGCATTC	.	116	22	110	0	.	72	C	20344887	T	C	20344887	3	2	194	1	0	0	0	0	1	0	0	0	11072	1464	51	2	463	2	OR4K2	14	20344887	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		20344887	87004653	1105	25261											
OR4K15	81127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20444394	20444394	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4K15	NM_001005486	exon1	c.T717C	p.V239V	CTTGGTTGTCTCC	.	86	52	68	0	.	69	C	20444394	T	C	20444394	2	2	194	1	0	0	0	0	0	0	0	1	11070	1799	63	2		2	OR4K15	14	20444394	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	99507	20444394	86905146	1106	25262											
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20666491	20666491	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR11G2	NM_001005503	exon1	c.A997T	p.K333X	AGGAACAAAGATA	.	76	25	97	0	.	70	T	20666491	A	T	20666491	4	4	194	1	0	0	0	0	0	1	0	0	10925	131	5	4	999	4	OR11G2	14	20666491	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	222097	20666491	86683049	1107	25263											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20851687	20851687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEP1	NM_007110	exon26	c.G3827T	p.G1276V	AGCTGCCCATTCT	.	91	47	99	0	.	95	A	20851687	C	A	20851687	3	1	194	1	0	0	0	0	1	0	0	0	15756	623	22	3	4176	3	TEP1	14	20851687	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	185196	20851687	86497853	1108	25264											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20871535	20871535	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEP1	NM_007110	exon8	c.1266+1G>T	.	GACTCACCTTTCT	.	106	51	121	0	.	95	A	20871535	C	A	20871535	5	1	194	1	0	0	0	0	0	0	1	0	15756	521	18	3	6812	3	TEP1	14	20871535	Splice_Site	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	19848	20871535	86478005	1109	25265											
TMEM55B	90809	broad.mit.edu;mdanderson.org	37	14	20929468	20929468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM55B	NM_001100814	exon1	c.A17G	p.E6G	GAACGCTCTCCAT	.	8	5	11	0	.	90	C	20929468	T	C	20929468	3	2	194	1	0	0	0	0	1	0	0	0	16179	1551	54	2	865	2	TMEM55B	14	20929468	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	57933	20929468	86420072	1110	25266											
OXA1L	5018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23237247	23237247	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXA1L	NM_005015	exon3	c.A486T	p.V162V	AGATGTAGTCCAA	.	80	35	82	0	.	204	T	23237247	A	T	23237247	2	4	194	1	0	0	0	0	0	0	0	1	11328	407	15	4		4	OXA1L	14	23237247	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2307779	23237247	84112293	1111	25267											
MMP14	4323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23312529	23312529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP14	NM_004995	exon5	c.G752T	p.S251I	ATTCCAGTGACCC	.	44	15	53	0	.	226	T	23312529	G	T	23312529	3	4	194	1	0	0	0	0	1	0	0	0	9653	1029	36	3	770	3	MMP14	14	23312529	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	75282	23312529	84037011	1112	25268											
CEBPE	1053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23587945	23587945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEBPE	NM_001805	exon1	c.C356A	p.A119E	TTCACCGCCACAG	.	42	18	39	0	.	92	T	23587945	G	T	23587945	3	4	194	1	0	0	0	0	1	0	0	0	3202	1087	38	1	497	1	CEBPE	14	23587945	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	275416	23587945	83761595	1113	25269											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23858850	23858850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH6	NM_002471	exon27	c.T3811A	p.S1271T	TGAGGGAGCGTTG	.	126	55	139	0	.	94	T	23858850	A	T	23858850	3	4	194	1	0	0	0	0	1	0	0	0	10038	304	11	4	2060	4	MYH6	14	23858850	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	270905	23858850	83490690	1114	25270											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23892879	23892879	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH7	NM_000257	exon24	c.G2976T	p.L992L	CTTGGTCAGCTTG	.	91	39	102	0	.	94	A	23892879	C	A	23892879	2	1	194	1	0	0	0	0	0	0	0	1	10039	813	29	3		3	MYH7	14	23892879	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	34029	23892879	83456661	1115	25271											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23900689	23900689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH7	NM_000257	exon9	c.G734T	p.G245V	AATTTCCCCTGGA	.	67	27	70	0	.	94	A	23900689	C	A	23900689	3	1	194	1	0	0	0	0	1	0	0	0	10039	637	22	3	5201	3	MYH7	14	23900689	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	7810	23900689	83448851	1116	25272											
DCAF11	80344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24586232	24586232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025230	exon3	c.G262T	p.G88W	CGTCTTGGGGATC	.	147	69	186	0	.	.	T	24586232	G	T	24586232	3	4	194	1	0	0	0	0	1	0	0	0	4262	1348	47	3	268	3	DCAF11	14	24586232	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	685543	24586232	82763308	1117	25273											
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	24792119	24792119	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY4	NM_001198592	exon19	c.T2333A	p.L778X	GAGTCCAAGGGGC	.	68	41	55	0	.	93	T	24792119	A	T	24792119	4	4	194	1	0	0	0	0	0	1	0	0	296	131	5	4	932	4	ADCY4	14	24792119	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	205887	24792119	82557421	1118	25274											
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24841727	24841727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFATC4	NM_001198967	exon4	c.G1466T	p.R489I	AGCCTAGAGCCCA	.	56	32	47	0	.	92	T	24841727	G	T	24841727	3	4	194	1	0	0	0	0	1	0	0	0	10365	942	33	3	1480	3	NFATC4	14	24841727	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	49608	24841727	82507813	1119	25275											
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24843545	24843545	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFATC4	NM_001198967	exon7	c.C1935A	p.A645A	CTCAGCCCAGGAG	.	44	21	45	0	.	92	A	24843545	C	A	24843545	2	1	194	1	0	0	0	0	0	0	0	1	10365	610	22	3		3	NFATC4	14	24843545	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1818	24843545	82505995	1120	25276											
NKX2-8	26257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	37051488	37051488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NKX2-8	NM_014360	exon1	c.A107T	p.Q36L	TCGGGCTGGGGGG	.	73	31	102	0	.	226	A	37051488	T	A	37051488	3	1	194	1	0	0	0	0	1	0	0	0	10454	1580	55	4	620	4	NKX2-8	14	37051488	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	12207943	37051488	70298052	1121	25277											
KLHL28	54813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45414552	45414552	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL28	NM_017658	exon2	c.A580T	p.T194S	CTTCGGTAGCTAC	.	108	49	97	0	.	91	A	45414552	T	A	45414552	3	1	194	1	0	0	0	0	1	0	0	0	8382	1638	57	4	1151	4	KLHL28	14	45414552	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	8363064	45414552	61934988	1122	25278											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45658267	45658267	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FANCM	NM_020937	exon20	c.A5042T	p.N1681I	ATGTAAATGATAA	.	106	44	111	0	.	569	T	45658267	A	T	45658267	3	4	194	1	0	0	0	0	1	0	0	0	5671	101	4	4	5120	4	FANCM	14	45658267	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	243715	45658267	61691273	1123	25279											
POLE2	5427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50140842	50140842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLE2	NM_001197331	exon5	c.A416T	p.Q139L	CTTACCTGGTGCA	.	93	39	89	0	.	229	A	50140842	T	A	50140842	3	1	194	1	0	0	0	0	1	0	0	0	12197	1594	55	4	1227	4	POLE2	14	50140842	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4482575	50140842	57208698	1124	25280											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52481921	52481921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NID2	NM_007361	exon15	c.C3101G	p.P1034R	TCCCGGGGGGTGC	.	119	58	127	0	.	158	C	52481921	G	C	52481921	3	2	194	1	0	0	0	0	1	0	0	0	10415	1232	43	4	1058	4	NID2	14	52481921	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2341079	52481921	54867619	1125	25281											
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53100355	53100355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR137C	NM_001099652	exon5	c.G975T	p.Q325H	GGCACAGAGATTA	.	69	30	75	0	.	68	T	53100355	G	T	53100355	3	4	194	1	0	0	0	0	1	0	0	0	6647	933	33	3	993	3	GPR137C	14	53100355	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	618434	53100355	54249185	1126	25282											
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53521180	53521180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDHD1	NM_001160147	exon12	c.A2434T	p.S812C	CAGAACTGCTATG	.	134	65	218	0	.	92	A	53521180	T	A	53521180	3	1	194	1	0	0	0	0	1	0	0	0	4326	1580	55	4	301	4	DDHD1	14	53521180	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	420825	53521180	53828360	1127	25283											
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53521253	53521253	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDHD1	NM_001160147	exon12	c.A2361G	p.S787S	TTCCATTGAGTCT	.	178	78	222	0	.	92	C	53521253	T	C	53521253	2	2	194	1	0	0	0	0	0	0	0	1	4326	1799	63	2		2	DDHD1	14	53521253	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	73	53521253	53828287	1128	25284											
C14orf105	55195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57960276	57960276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C14orf105	NM_018168	exon1	c.A158G	p.Q53R	TTATTCTGGTCCT	.	47	20	43	0	.	90	C	57960276	T	C	57960276	3	2	194	1	0	0	0	0	1	0	0	0	1737	1580	55	2	756	2	C14orf105	14	57960276	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4439023	57960276	49389264	1129	25285											
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58924599	58924599	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA0586	NM_001244189	exon13	c.A1644G	p.Q548Q	AGTACAAAACAAT	.	71	33	100	0	.	23	G	58924599	A	G	58924599	2	3	194	1	0	0	0	0	0	0	0	1	8186	11	1	2		2	KIAA0586	14	58924599	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	964323	58924599	48424941	1130	25286											
SIX4	51804	broad.mit.edu;bcgsc.ca	37	14	61190041	61190042	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.A251Y	TTCTCGGCGGGCG	.	30	9	35	0	.	.	TA	61190042	GC	TA	61190041	3	4	194	1	0	0	0	0	1	0	0	0	14349	1203	42	3	1605	3	SIX4	14	61190041	Missense_Mutation	DNP	GC	TCGA-UB-A7MB-01A-11D-A33Q-10	2265442	61190041	46159499	1131	25287											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64886605	64886605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTHFD1	NM_005956	exon8	c.G689T	p.G230V	AACCTGGGGCAAT	.	87	47	106	0	.	92	T	64886605	G	T	64886605	3	4	194	1	0	0	0	0	1	0	0	0	9927	1232	43	3	719	3	MTHFD1	14	64886605	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3696564	64886605	42462935	1132	25288											
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65267543	65267543	+	Silent	SNP	A	A	G	rs115882528	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTB	NM_001024858	exon7	c.T807C	p.Y269Y	CACCACATAGGTG	.	110	47	134	0	A|0.998;G|0.002	100	G	65267543	A	G	65267543	2	3	194	1	0	0	0	0	0	0	0	1	15117	224	8	2		2	SPTB	14	65267543	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	380938	65267543	42081997	1133	25289											
PLEK2	26499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67857415	67857415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEK2	NM_016445	exon7	c.G820A	p.D274N	CTGGATCCTTCCT	.	92	36	115	0	.	92	T	67857415	C	T	67857415	3	4	194	1	0	0	0	0	1	0	0	0	12054	855	30	3	253	3	PLEK2	14	67857415	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2589872	67857415	39492125	1134	25290											
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72200517	72200517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIPA1L1	NM_015556	exon19	c.A5059G	p.K1687E	GCTGCCAAAGCCT	.	34	13	31	0	.	156	G	72200517	A	G	72200517	3	3	194	1	0	0	0	0	1	0	0	0	14329	131	5	2	5129	2	SIPA1L1	14	72200517	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4343102	72200517	35149023	1135	25291											
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75019087	75019087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LTBP2	NM_000428	exon6	c.A1202T	p.Q401L	GGGATCTGGCAGA	.	23	12	26	0	.	92	A	75019087	T	A	75019087	3	1	194	1	0	0	0	0	1	0	0	0	9074	1580	55	4	4387	4	LTBP2	14	75019087	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2818570	75019087	32330453	1136	25292											
LTBP2	4053	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75078477	75078477	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LTBP2	NM_000428	exon1	c.G171A	p.G57G	GCTGCCCCCAGGG	.	23	7	22	0	.	92	T	75078477	C	T	75078477	2	4	194	1	0	0	0	0	0	0	0	1	9074	610	22	3		3	LTBP2	14	75078477	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	59390	75078477	32271063	1137	25293											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75516322	75516322	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLH3	NM_014381	exon2	c.T37C	p.L13L	AACGCAATTTGGC	.	64	36	79	0	.	228	G	75516322	A	G	75516322	2	3	194	1	0	0	0	0	0	0	0	1	9618	98	4	2		2	MLH3	14	75516322	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	437845	75516322	31833218	1138	25294											
FOS	2353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75747981	75747981	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOS	NM_005252	exon4	c.A997T	p.S333C	ACTCCCAGCTGCA	.	34	16	39	0	.	847	T	75747981	A	T	75747981	3	4	194	1	0	0	0	0	1	0	0	0	5985	188	7	4	1011	4	FOS	14	75747981	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	231659	75747981	31601559	1139	25295											
ISM2	145501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77942113	77942113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ISM2	NM_199296	exon7	c.G1541A	p.S514N	TCGGTGCTGATGA	.	37	8	45	0	.	91	T	77942113	C	T	77942113	3	4	194	1	0	0	0	0	1	0	0	0	7861	797	28	3	178	3	ISM2	14	77942113	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2194132	77942113	29407427	1140	25296											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089087	86089087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLRT2	NM_013231	exon2	c.A1229G	p.D410G	TTCCTGACTGGGA	.	189	75	211	0	.	94	G	86089087	A	G	86089087	3	3	194	1	0	0	0	0	1	0	0	0	5939	275	10	2	1231	2	FLRT2	14	86089087	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8146974	86089087	21260453	1141	25297											
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88401194	88401194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALC	NM_000153	exon17	c.A1940T	p.D647V	GACTTGTCATTCA	.	61	21	70	0	.	90	A	88401194	T	A	88401194	3	1	194	1	0	0	0	0	1	0	0	0	6201	1667	58	4	121	4	GALC	14	88401194	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2312107	88401194	18948346	1142	25298											
GPR65	8477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88478190	88478190	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR65	NM_003608	exon2	c.A999T	p.L333F	GGAATTAGAGGTC	.	80	37	92	0	.	90	T	88478190	A	T	88478190	3	4	194	1	0	0	0	0	1	0	0	0	6706	417	15	4	1001	4	GPR65	14	88478190	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	76996	88478190	18871350	1143	25299											
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88707163	88707163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNK10	NM_138318	exon3	c.A404G	p.H135R	AGAGCATGCTGCA	.	32	19	25	0	.	95	C	88707163	T	C	88707163	3	2	194	1	0	0	0	0	1	0	0	0	8059	1478	51	2	1247	2	KCNK10	14	88707163	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	228973	88707163	18642377	1144	25300											
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89044335	89044335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZC3H14	NM_001160104	exon9	c.A1130C	p.Q377P	TTCCACAGAAACA	.	255	96	331	0	.	93	C	89044335	A	C	89044335	3	2	194	1	0	0	0	0	1	0	0	0	17563	188	7	5	1164	5	ZC3H14	14	89044335	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	337172	89044335	18305205	1145	25301											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	89154769	89154769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EML5	NM_183387	exon18	c.2588delA	p.N863fs	GTGTCATTTTTCC	.	56	23	62	0	.	93	-	89154769	T	-	89154769	7	5	194	1	0	1	0	1	0	0	0	0	5100	1493	52	0	3449	0	EML5	14	89154769	Frame_Shift_Del	DEL	T	TCGA-UB-A7MB-01A-11D-A33Q-10	110434	89154769	18194771	1146	25302											
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90650791	90650791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNK13	NM_022054	exon2	c.A671T	p.Y224F	GGAGCTACTTTGA	.	92	39	105	0	.	91	T	90650791	A	T	90650791	3	4	194	1	0	0	0	0	1	0	0	0	8061	391	14	4	677	4	KCNK13	14	90650791	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1496022	90650791	16698749	1147	25303											
FAM181A	90050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94395161	94395161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM181A	NM_138344	exon3	c.T716A	p.L239Q	AGCCCCTGGGACC	.	22	15	42	0	.	90	A	94395161	T	A	94395161	3	1	194	1	0	0	0	0	1	0	0	0	5508	1580	55	4	722	4	FAM181A	14	94395161	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3744370	94395161	12954379	1148	25304											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105413692	105413692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK2	NM_138420	exon7	c.A8096T	p.Q2699L	GGGGGCTGAATGC	.	120	49	214	0	.	47	A	105413692	T	A	105413692	3	1	194	1	0	0	0	0	1	0	0	0	415	1580	55	4	9295	4	AHNAK2	14	105413692	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	11018531	105413692	1935848	1149	25305											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105420987	105420987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK2	NM_138420	exon7	c.A801G	p.I267M	GCTCTTTATGGAT	.	24	19	48	0	.	47	C	105420987	T	C	105420987	3	2	194	1	0	0	0	0	1	0	0	0	415	1744	61	2	16590	2	AHNAK2	14	105420987	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7295	105420987	1928553	1150	25306											
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	27777744	27777744	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_033223	exon10	c.1123-2A>T	.	GCTTGCAGAACTA	.	57	29	72	0	.	.	T	27777744	A	T	27777744	5	4	194	1	0	0	0	0	0	0	1	0	6173	202	7	4	1159	4	GABRG3	15	27777744	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		27777744	74753648	1151	25307											
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33091016	33091016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FMN1	NM_001103184	exon15	c.A3450G	p.I1150M	TTTAGATATGTTT	.	62	27	77	0	.	23	C	33091016	T	C	33091016	3	2	194	1	0	0	0	0	1	0	0	0	5949	1396	49	2	152	2	FMN1	15	33091016	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5313272	33091016	69440376	1152	25308											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33954785	33954785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001243996	exon35	c.A5054T	p.E1685V	GCCCCGAGATTCC	.	74	35	81	0	.	520	T	33954785	A	T	33954785	3	4	194	1	0	0	0	0	1	0	0	0	13770	304	11	4	5192	4	RYR3	15	33954785	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	863769	33954785	68576607	1153	25309											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34080457	34080457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001243996	exon67	c.C9628G	p.L3210V	CCCGACCTGCTGA	.	95	47	99	0	.	520	G	34080457	C	G	34080457	3	3	194	1	0	0	0	0	1	0	0	0	13770	680	24	4	9894	4	RYR3	15	34080457	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	125672	34080457	68450935	1154	25310											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34105180	34105180	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001036	exon73	c.C10374T	p.V3458V	AGCTGTCTTCCAC	.	57	36	65	0	.	520	T	34105180	C	T	34105180	2	4	194	1	0	0	0	0	0	0	0	1	13770	900	32	3		3	RYR3	15	34105180	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	24723	34105180	68426212	1155	25311											
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38804991	38804991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASGRP1	NM_001128602	exon7	c.T842C	p.V281A	TGAGCCACCTGGA	.	68	27	78	0	.	697	G	38804991	A	G	38804991	3	3	194	1	0	0	0	0	1	0	0	0	13074	159	6	2	1595	2	RASGRP1	15	38804991	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4699811	38804991	63726401	1156	25312											
BUB1B	701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40491906	40491906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BUB1B	NM_001211	exon10	c.A1379T	p.Q460L	CTACTCAGCAAGA	.	285	122	320	0	.	1509	T	40491906	A	T	40491906	3	4	194	1	0	0	0	0	1	0	0	0	1571	188	7	4	1417	4	BUB1B	15	40491906	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1686915	40491906	62039486	1157	25313											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40591344	40591344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCB2	NM_004573	exon8	c.A668T	p.E223V	AAGATCTCATCTA	.	43	18	71	0	.	275	A	40591344	T	A	40591344	3	1	194	1	0	0	0	0	1	0	0	0	12028	1551	54	4	2989	4	PLCB2	15	40591344	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	99438	40591344	61940048	1158	25314											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40660858	40660858	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DISP2	NM_033510	exon8	c.A2545T	p.S849C	AGCCCCAGCTGCG	.	33	14	28	0	.	92	T	40660858	A	T	40660858	3	4	194	1	0	0	0	0	1	0	0	0	4540	188	7	4	2575	4	DISP2	15	40660858	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	69514	40660858	61870534	1159	25315											
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42134021	42134021	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	JMJD7-PLA2G4B	NM_005090	exon13	c.A1188T	p.S396S	AGCCTCAGAGCAC	.	78	35	77	0	.	135	T	42134021	A	T	42134021	2	4	194	1	0	0	0	0	0	0	0	1	7955	175	7	4		4	JMJD7-PLA2G4B	15	42134021	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1473163	42134021	60397371	1160	25316											
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42364510	42364510	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLA2G4D	NM_178034	exon14	c.T1398C	p.N466N	TTTGACATTGAGG	.	42	20	51	0	.	136	G	42364510	A	G	42364510	2	3	194	1	0	0	0	0	0	0	0	1	12004	214	8	2		2	PLA2G4D	15	42364510	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	230489	42364510	60166882	1161	25317											
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42839595	42839595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC57	NM_153260	exon4	c.A356T	p.Q119L	CCCAGTTGGTTCC	.	80	42	89	0	.	90	A	42839595	T	A	42839595	3	1	194	1	0	0	0	0	1	0	0	0	9013	1812	63	4	375	4	LRRC57	15	42839595	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	475085	42839595	59691797	1162	25318											
EPB42	2038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43500883	43500883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB42	NM_000119	exon7	c.A1013G	p.Y338C	TCATTATAGTATT	.	139	65	120	0	.	92	C	43500883	T	C	43500883	3	2	194	1	0	0	0	0	1	0	0	0	5158	1406	49	2	1180	2	EPB42	15	43500883	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	661288	43500883	59030509	1163	25319											
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	43571862	43571862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TGM7	NM_052955	exon10	c.T1639G	p.W547G	GCCTCCAGAAGGG	.	37	11	49	0	.	92	C	43571862	A	C	43571862	3	2	194	1	0	0	0	0	1	0	0	0	15832	188	7	5	509	5	TGM7	15	43571862	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	70979	43571862	58959530	1164	25320											
STRC	161497	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	43900119	43900119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STRC	NM_153700	exon18	c.T3736G	p.W1246G	TTGTCCATTCTGG	.	314	128	344	0	.	90	C	43900119	A	C	43900119	3	2	194	1	0	0	0	0	1	0	0	0	15327	217	8	5	1639	5	STRC	15	43900119	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	328257	43900119	58631273	1165	25321											
WDR76	79968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44158449	44158449	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR76	NM_024908	exon13	c.A1740C	p.T580T	TGAGACAGGAAAG	.	141	57	126	0	.	90	C	44158449	A	C	44158449	2	2	194	1	0	0	0	0	0	0	0	1	17323	175	7	5		5	WDR76	15	44158449	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	258330	44158449	58372943	1166	25322											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48058822	48058822	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA6D	NM_020858	exon16	c.A1695G	p.G565G	TGAAGGATATGAA	.	88	44	105	0	.	138	G	48058822	A	G	48058822	2	3	194	1	0	0	0	0	0	0	0	1	14042	320	12	2		2	SEMA6D	15	48058822	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3900373	48058822	54472570	1167	25323											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48756135	48756135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN1	NM_000138	exon41	c.C5026A	p.P1676T	AGTCTGGAGGACA	.	57	24	77	0	.	92	T	48756135	G	T	48756135	3	4	194	1	0	0	0	0	1	0	0	0	5702	1174	41	3	3693	3	FBN1	15	48756135	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	697313	48756135	53775257	1168	25324											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51289653	51289653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AP4E1	NM_007347	exon18	c.A2477G	p.Y826C	TGGCATATGAAGA	.	88	31	74	0	.	90	G	51289653	A	G	51289653	3	3	194	1	0	0	0	0	1	0	0	0	752	449	16	2	2547	2	AP4E1	15	51289653	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2533518	51289653	51241739	1169	25325											
RNF111	54778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59373264	59373264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF111	NM_017610	exon8	c.A2078G	p.H693R	CTTTCCATTCTCA	.	199	91	202	0	.	92	G	59373264	A	G	59373264	3	3	194	1	0	0	0	0	1	0	0	0	13425	217	8	2	2104	2	RNF111	15	59373264	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8083611	59373264	43158128	1170	25326											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62223325	62223325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VPS13C	NM_020821	exon50	c.A6002C	p.D2001A	AGATCATCAAGGG	.	91	41	96	0	.	92	G	62223325	T	G	62223325	3	3	194	1	0	0	0	0	1	0	0	0	17188	1435	50	5	5431	5	VPS13C	15	62223325	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2850061	62223325	40308067	1171	25327											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63102125	63102125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLN2	NM_015059	exon49	c.A6665C	p.Q2222P	TCCAGCAAGCATC	.	88	46	119	0	.	573	C	63102125	A	C	63102125	3	2	194	1	0	0	0	0	1	0	0	0	15945	144	5	5	6859	5	TLN2	15	63102125	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	878800	63102125	39429267	1172	25328											
CA12	771	broad.mit.edu;mdanderson.org	37	15	63673907	63673907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CA12	NM_206925	exon1	c.A13C	p.S5R	GCAGGCTGCGCCG	.	30	8	33	1	.	515	G	63673907	T	G	63673907	3	3	194	1	0	0	0	0	1	0	0	0	2513	1580	55	5	1095	5	CA12	15	63673907	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	571782	63673907	38857485	1173	25329											
MEGF11	84465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66222097	66222097	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEGF11	NM_032445	exon12	c.T1533A	p.T511T	GCCAGGAGTGCAG	.	98	36	105	0	.	69	T	66222097	A	T	66222097	2	4	194	1	0	0	0	0	0	0	0	1	9461	291	11	4		4	MEGF11	15	66222097	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2548190	66222097	36309295	1174	25330											
RPL4	6124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	66795504	66795504	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPL4	NM_000968	exon4	c.176-2A>T	.	ATGACCTAAAATT	.	115	44	110	0	.	90	A	66795504	T	A	66795504	5	1	194	1	0	0	0	0	0	0	1	0	13595	1536	53	4	1141	4	RPL4	15	66795504	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	573407	66795504	35735888	1175	25331											
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68624266	68624266	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA11	NM_001004439	exon14	c.G1701A	p.E567E	GTTGTCCTCCAGG	.	104	57	100	0	.	538	T	68624266	C	T	68624266	2	4	194	1	0	0	0	0	0	0	0	1	7874	680	24	3		3	ITGA11	15	68624266	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1828762	68624266	33907126	1176	25332											
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68624312	68624312	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA11	NM_001004439	exon14	c.T1655A	p.L552H	TGGTTGAGGTCTC	.	127	52	123	0	.	538	T	68624312	A	T	68624312	3	4	194	1	0	0	0	0	1	0	0	0	7874	304	11	4	1979	4	ITGA11	15	68624312	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	46	68624312	33907080	1177	25333											
CORO2B	10391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69006317	69006317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CORO2B	NM_006091	exon6	c.G702T	p.M234I	GAACATGAAGCGG	.	61	20	94	0	.	158	T	69006317	G	T	69006317	3	4	194	1	0	0	0	0	1	0	0	0	3757	1290	45	3	724	3	CORO2B	15	69006317	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	382005	69006317	33525075	1178	25334											
UACA	55075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	70959793	70959793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UACA	NM_018003	exon16	c.A3230G	p.Q1077R	TATTTCTGTGACA	.	51	26	78	1	.	94	C	70959793	T	C	70959793	3	2	194	1	0	0	0	0	1	0	0	0	16821	1580	55	2	1036	2	UACA	15	70959793	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1953476	70959793	31571599	1179	25335											
GRAMD2	196996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72455799	72455799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRAMD2	NM_001012642	exon10	c.T764C	p.V255A	GAAGCTACTTGGG	.	85	38	87	0	.	90	G	72455799	A	G	72455799	3	3	194	1	0	0	0	0	1	0	0	0	6750	391	14	2	312	2	GRAMD2	15	72455799	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1496006	72455799	30075593	1180	25336											
NEO1	4756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73541516	73541516	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEO1	NM_001172623	exon10	c.G1722A	p.L574L	TAAATTGTACTAC	.	51	12	75	0	.	116	A	73541516	G	A	73541516	2	1	194	1	0	0	0	0	0	0	0	1	10336	1368	48	3		3	NEO1	15	73541516	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1085717	73541516	28989876	1181	25337											
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73614832	73614832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HCN4	NM_005477	exon8	c.C3602A	p.S1201Y	AGATTGGATGGCA	.	143	65	175	0	.	96	T	73614832	G	T	73614832	3	4	194	1	0	0	0	0	1	0	0	0	6999	1174	41	3	13	3	HCN4	15	73614832	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	73316	73614832	28916560	1182	25338											
CD276	80381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73994758	73994758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD276	NM_025240	exon3	c.A242G	p.E81G	TTGCTGAGGGCCA	.	58	28	67	0	.	91	G	73994758	A	G	73994758	3	3	194	1	0	0	0	0	1	0	0	0	2992	304	11	2	248	2	CD276	15	73994758	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	379926	73994758	28536634	1183	25339											
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74707046	74707046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA7A	NM_003612	exon10	c.A1136T	p.Q379L	GCCACCTGGAAGG	.	61	37	79	0	.	153	A	74707046	T	A	74707046	3	1	194	1	0	0	0	0	1	0	0	0	14043	1580	55	4	884	4	SEMA7A	15	74707046	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	712288	74707046	27824346	1184	25340											
SEMA7A	8482	broad.mit.edu;bcgsc.ca	37	15	74708242	74708242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA7A	NM_003612	exon8	c.A886G	p.T296A	TGTTGGTGGCAGC	.	134	8	149	0	.	153	C	74708242	T	C	74708242	3	2	194	1	0	0	0	0	1	0	0	0	14043	1696	59	2	1142	2	SEMA7A	15	74708242	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1196	74708242	27823150	1185	25341											
CYP1A1	1543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75013936	75013936	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYP1A1	NM_000499	exon3	c.A948G	p.G316G	ACCAGCTCCAAAG	.	62	26	80	0	.	156	C	75013936	T	C	75013936	2	2	194	1	0	0	0	0	0	0	0	1	4149	1538	54	2		2	CYP1A1	15	75013936	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	305694	75013936	27517456	1186	25342											
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75111520	75111520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LMAN1L	NM_021819	exon6	c.A625T	p.S209C	ACTCCCAGTGATC	.	56	20	69	0	.	90	T	75111520	A	T	75111520	3	4	194	1	0	0	0	0	1	0	0	0	8837	188	7	4	647	4	LMAN1L	15	75111520	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	97584	75111520	27419872	1187	25343											
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75499850	75499850	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C15orf39	NM_015492	exon2	c.A1461T	p.P487P	TCTTCCACAGAAG	.	43	18	66	0	.	90	T	75499850	A	T	75499850	2	4	194	1	0	0	0	0	0	0	0	1	1793	146	6	4		4	C15orf39	15	75499850	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	388330	75499850	27031542	1188	25344											
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76152229	76152229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2Q2	NM_173469	exon3	c.A293T	p.Q98L	GTCAGCAATTGAA	.	75	38	100	0	.	70	T	76152229	A	T	76152229	3	4	194	1	0	0	0	0	1	0	0	0	16867	130	5	4	439	4	UBE2Q2	15	76152229	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	652379	76152229	26379163	1189	25345											
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76183352	76183352	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2Q2	NM_173469	exon11	c.T1026C	p.N342N	AGCAAATAAGGTA	.	82	32	105	0	.	70	C	76183352	T	C	76183352	2	2	194	1	0	0	0	0	0	0	0	1	16867	1403	49	2		2	UBE2Q2	15	76183352	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	31123	76183352	26348040	1190	25346											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77021006	77021006	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCAPER	NM_020843	exon16	c.G2095C	p.E699Q	GGGCTTCTTGTTC	.	77	32	103	0	.	137	G	77021006	C	G	77021006	3	3	194	1	0	0	0	0	1	0	0	0	13878	922	32	4	2171	4	SCAPER	15	77021006	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	837654	77021006	25510386	1191	25347											
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79749742	79749742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1024	NM_015206	exon2	c.A1253G	p.K418R	TGCCAAAGGATCA	.	191	86	216	0	.	183	G	79749742	A	G	79749742	3	3	194	1	0	0	0	0	1	0	0	0	8205	72	3	2	1255	2	KIAA1024	15	79749742	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2728736	79749742	22781650	1192	25348											
MEX3B	84206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82336831	82336831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEX3B	NM_032246	exon2	c.T380C	p.I127T	GAGATGATCTCCC	.	31	14	34	0	.	226	G	82336831	A	G	82336831	3	3	194	1	0	0	0	0	1	0	0	0	9510	333	12	2	1333	2	MEX3B	15	82336831	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2587089	82336831	20194561	1193	25349											
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82444096	82444096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFTUD1	NM_024580	exon18	c.G2699A	p.S900N	AATTTACTTAGGT	.	98	41	84	0	.	91	T	82444096	C	T	82444096	3	4	194	1	0	0	0	0	1	0	0	0	4960	565	20	3	675	3	EFTUD1	15	82444096	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	107265	82444096	20087296	1194	25350											
BTBD1	53339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83718868	83718868	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BTBD1	NM_025238	exon3	c.A621G	p.T207T	ATCCATTGTGCTT	.	60	31	79	0	.	91	C	83718868	T	C	83718868	2	2	194	1	0	0	0	0	0	0	0	1	1537	1799	63	2		2	BTBD1	15	83718868	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1274772	83718868	18812524	1195	25351											
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	86286977	86286977	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP13	NM_006738	exon36	c.C8325A	p.T2775T	CTCTACCCGCCTG	.	101	15	138	0	.	258	A	86286977	C	A	86286977	2	1	194	1	0	0	0	0	0	0	0	1	449	610	22	3		3	AKAP13	15	86286977	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2568109	86286977	16244415	1196	25352											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86702252	86702252	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152336	exon4	c.A345C	p.A115A	CCAAGCAATCAGG	.	81	41	86	0	.	.	C	86702252	A	C	86702252	2	2	194	1	0	0	0	0	0	0	0	1	375	117	5	5		5	AGBL1	15	86702252	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	415275	86702252	15829140	1197	25353											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86823010	86823010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152336	exon15	c.T2078A	p.L693H	CAGCCCTCATGGT	.	110	54	106	0	.	.	A	86823010	T	A	86823010	3	1	194	1	0	0	0	0	1	0	0	0	375	1551	54	4	2132	4	AGBL1	15	86823010	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	120758	86823010	15708382	1198	25354											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	87097675	87097675	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152336	exon20	c.C2763A	p.S921S	AGCTTCCACGGCC	.	63	30	77	0	.	.	A	87097675	C	A	87097675	2	1	194	1	0	0	0	0	0	0	0	1	375	581	21	3		3	AGBL1	15	87097675	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	274665	87097675	15433717	1199	25355											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89388804	89388804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ACAN	NM_001135	exon7	c.A1120G	p.T374A	GTCCAGACAGTGA	.	75	36	92	0	.	25	G	89388804	A	G	89388804	3	3	194	1	0	0	0	0	1	0	0	0	117	275	10	2	1142	2	ACAN	15	89388804	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2291129	89388804	13142588	1200	25356											
ABHD2	11057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89694906	89694906	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABHD2	NM_152924	exon4	c.195-2A>G	.	TTCTTTAGATACA	.	64	32	81	0	.	227	G	89694906	A	G	89694906	5	3	194	1	0	0	0	0	0	0	1	0	82	434	15	2	199	2	ABHD2	15	89694906	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	306102	89694906	12836486	1201	25357											
WDR93	56964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90246187	90246187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR93	NM_020212	exon3	c.A310C	p.K104Q	CTCAACAAAATGC	.	85	41	101	0	.	24	C	90246187	A	C	90246187	3	2	194	1	0	0	0	0	1	0	0	0	17337	131	5	5	316	5	WDR93	15	90246187	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	551281	90246187	12285205	1202	25358											
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94913364	94913364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCTP2	NM_001159643	exon11	c.G1537A	p.V513M	CTACAAGTGAAGG	.	106	20	119	0	.	93	A	94913364	G	A	94913364	3	1	194	1	0	0	0	0	1	0	0	0	9401	1029	36	3	1579	3	MCTP2	15	94913364	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	4667177	94913364	7618028	1203	25359											
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99478555	99478555	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGF1R	NM_000875	exon17	c.T3197A	p.L1066Q	GATTGCTGGGTGT	.	75	35	87	0	.	1490	A	99478555	T	A	99478555	3	1	194	1	0	0	0	0	1	0	0	0	7571	1580	55	4	3263	4	IGF1R	15	99478555	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4565191	99478555	3052837	1204	25360											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101598240	101598240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRK1	NM_024652	exon29	c.T4573A	p.F1525I	CCGACTTTTGCCA	.	55	24	80	0	.	602	A	101598240	T	A	101598240	3	1	194	1	0	0	0	0	1	0	0	0	9032	1841	64	4	4683	4	LRRK1	15	101598240	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2119685	101598240	933152	1205	25361											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	101605833	101605833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRK1	NM_024652	exon32	c.A5191G	p.M1731V	CCCTACATGGCCC	.	55	27	71	0	.	602	G	101605833	A	G	101605833	3	3	194	1	0	0	0	0	1	0	0	0	9032	217	8	2	5313	2	LRRK1	15	101605833	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	7593	101605833	925559	1206	25362											
TARSL2	123283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102252089	102252089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TARSL2	NM_152334	exon5	c.A806G	p.E269G	CTGTCTTCAATGA	.	67	15	74	0	.	92	C	102252089	T	C	102252089	3	2	194	1	0	0	0	0	1	0	0	0	15558	1783	62	2	1662	2	TARSL2	15	102252089	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	646256	102252089	279303	1207	25363											
RHBDF1	64285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	114754	114754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RHBDF1	NM_022450	exon3	c.A191G	p.H64R	AGCTCATGGTGGG	.	44	20	66	0	.	92	C	114754	T	C	114754	3	2	194	1	0	0	0	0	1	0	0	0	13319	1464	51	2	2440	2	RHBDF1	16	114754	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		114754	90239999	1208	25364											
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	333349	333349	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDIA2	NM_006849	exon1	c.T180A	p.P60P	GCACCCTGCCCTG	.	47	27	67	0	.	91	A	333349	T	A	333349	2	1	194	1	0	0	0	0	0	0	0	1	11668	1567	55	4		4	PDIA2	16	333349	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	218595	333349	90021404	1209	25365											
NHLRC4	283948	broad.mit.edu;mdanderson.org	37	16	618166	618166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_176677	exon2	c.T119C	p.L40P	GCTCCCTGGGGGG	.	41	16	44	2	.	.	C	618166	T	C	618166	3	2	194	1	0	0	0	0	1	0	0	0	10408	1580	55	2	121	2	NHLRC4	16	618166	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	284817	618166	89736587	1210	25366											
CCDC78	124093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	774367	774367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC78	NM_001031737	exon9	c.T908A	p.L303Q	TCCACCAGCCTCT	.	41	20	37	0	.	91	T	774367	A	T	774367	3	4	194	1	0	0	0	0	1	0	0	0	2852	188	7	4	432	4	CCDC78	16	774367	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	156201	774367	89580386	1211	25367											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1270071	1270071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1H	NM_021098	exon35	c.A6139G	p.R2047G	CCGGTGAGGCCGG	.	84	39	109	0	.	67	G	1270071	A	G	1270071	3	3	194	1	0	0	0	0	1	0	0	0	2545	295	11	2	6273	2	CACNA1H	16	1270071	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	495704	1270071	89084682	1212	25368											
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1551726	1551726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TELO2	NM_016111	exon11	c.G1424A	p.G475D	TGGATGGCGGCGT	.	20	11	25	0	.	90	A	1551726	G	A	1551726	3	1	194	1	0	0	0	0	1	0	0	0	15754	1203	42	3	1462	3	TELO2	16	1551726	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	281655	1551726	88803027	1213	25369											
TBL3	10607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2026270	2026270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBL3	NM_006453	exon13	c.A1247T	p.Q416L	TGGCTCAGGGTTC	.	63	29	87	0	.	90	T	2026270	A	T	2026270	3	4	194	1	0	0	0	0	1	0	0	0	15640	188	7	4	1297	4	TBL3	16	2026270	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	474544	2026270	88328483	1214	25370											
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2048704	2048704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF598	NM_178167	exon13	c.A2360T	p.Q787L	CTGACCTGTCTGA	.	64	27	73	0	.	432	A	2048704	T	A	2048704	3	1	194	1	0	0	0	0	1	0	0	0	18025	1594	55	4	362	4	ZNF598	16	2048704	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	22434	2048704	88306049	1215	25371											
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2282755	2282755	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	E4F1	NM_004424	exon6	c.731-2A>C	.	CTCTGCAGATGAG	.	36	21	56	0	.	187	C	2282755	A	C	2282755	5	2	194	1	0	0	0	0	0	0	1	0	4874	202	7	5	751	5	E4F1	16	2282755	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	234051	2282755	88071998	1216	25372											
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2348543	2348543	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA3	NM_001089	exon16	c.1742-2A>G	.	GAGACCTGGGGCC	.	74	31	62	0	.	1015	C	2348543	T	C	2348543	5	2	194	1	0	0	0	0	0	0	1	0	33	1594	55	2	3450	2	ABCA3	16	2348543	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	65788	2348543	88006210	1217	25373											
TRAP1	10131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3739091	3739091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAP1	NM_016292	exon3	c.G295T	p.D99Y	CAATGTCCAAAAG	.	59	25	91	1	.	226	A	3739091	C	A	3739091	3	1	194	1	0	0	0	0	1	0	0	0	16452	855	30	3	1883	3	TRAP1	16	3739091	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1390548	3739091	86615662	1218	25374											
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5112500	5112500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C16orf89	NM_001098514	exon2	c.T284A	p.L95Q	TCCCCCAGCATCC	.	60	30	61	0	.	92	T	5112500	A	T	5112500	3	4	194	1	0	0	0	0	1	0	0	0	1842	188	7	4	1087	4	C16orf89	16	5112500	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1373409	5112500	85242253	1219	25375											
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11076808	11076808	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLEC16A	NM_015226	exon9	c.A1031T	p.E344V	TGTCTGAGATGTA	.	57	25	51	0	.	92	T	11076808	A	T	11076808	3	4	194	1	0	0	0	0	1	0	0	0	3500	304	11	4	1065	4	CLEC16A	16	11076808	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5964308	11076808	79277945	1220	25376											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14340581	14340581	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MKL2	NM_014048	exon12	c.A1464T	p.T488T	ACCTACAGGAACC	.	68	36	83	0	.	95	T	14340581	A	T	14340581	2	4	194	1	0	0	0	0	0	0	0	1	9602	175	7	4		4	MKL2	16	14340581	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3263773	14340581	76014172	1221	25377											
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	17353092	17353092	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XYLT1	NM_022166	exon3	c.A666G	p.R222R	TGCGGCTCTGTCC	.	86	40	87	0	.	94	C	17353092	T	C	17353092	2	2	194	1	0	0	0	0	0	0	0	1	17460	1548	54	2		2	XYLT1	16	17353092	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3012511	17353092	73001661	1222	25378											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19033071	19033071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMC7	NM_024847	exon4	c.A581G	p.Y194C	CGAAATACAAGAT	.	103	37	109	0	.	93	G	19033071	A	G	19033071	3	3	194	1	0	0	0	0	1	0	0	0	15987	391	14	2	595	2	TMC7	16	19033071	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1679979	19033071	71321682	1223	25379											
GPR139	124274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	20084903	20084903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR139	NM_001002911	exon1	c.C36G	p.S12R	CAGCGAGCTGTTG	.	115	52	126	0	.	92	C	20084903	G	C	20084903	3	2	194	1	0	0	0	0	1	0	0	0	6648	962	34	4	1033	4	GPR139	16	20084903	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1051832	20084903	70269850	1224	25380											
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20788756	20788756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ACSM3	NM_005622	exon4	c.A492T	p.Q164H	ACTACAATCTTCA	.	91	46	107	0	.	91	T	20788756	A	T	20788756	3	4	194	1	0	0	0	0	1	0	0	0	185	98	4	4	502	4	ACSM3	16	20788756	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	703853	20788756	69565997	1225	25381											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21136500	21136500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH3	NM_017539	exon9	c.A1400C	p.H467P	ACTTTGTGTATCA	.	68	35	51	0	.	167	G	21136500	T	G	21136500	3	3	194	1	0	0	0	0	1	0	0	0	4603	1696	59	5	11165	5	DNAH3	16	21136500	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	347744	21136500	69218253	1226	25382											
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21215496	21215496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZP2	NM_003460	exon9	c.C827T	p.T276I	GGTATGGTGAGAG	.	42	18	78	0	.	91	A	21215496	G	A	21215496	3	1	194	1	0	0	0	0	1	0	0	0	18213	1261	44	3	1454	3	ZP2	16	21215496	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	78996	21215496	69139257	1227	25383											
POLR3E	55718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22316495	22316495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLR3E	NM_001258033	exon3	c.A55G	p.K19E	TTGGCCAAGAGTC	.	71	29	76	0	.	91	G	22316495	A	G	22316495	3	3	194	1	0	0	0	0	1	0	0	0	12232	131	5	2	61	2	POLR3E	16	22316495	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1100999	22316495	68038258	1228	25384											
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	23080584	23080584	+	Missense_Mutation	SNP	C	C	A	rs34435034	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP31	NM_020718	exon16	c.G2842T	p.V948L	TGAACACGCCTTC	.	52	23	79	0	C|0.999;T|0.001	663	A	23080584	C	A	23080584	3	1	194	1	0	0	0	0	1	0	0	0	17059	536	19	1	1220	1	USP31	16	23080584	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	764089	23080584	67274169	1229	25385											
SCNN1G	6340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23223399	23223399	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCNN1G	NM_001039	exon8	c.T1221C	p.C407C	GAAATGTGGGTGT	.	43	16	49	1	.	158	C	23223399	T	C	23223399	2	2	194	1	0	0	0	0	0	0	0	1	13930	1702	59	2		2	SCNN1G	16	23223399	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	142815	23223399	67131354	1230	25386											
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24373102	24373102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNG3	NM_006539	exon4	c.T866A	p.L289Q	CTTTTCTACAGTT	.	94	40	96	0	.	90	A	24373102	T	A	24373102	3	1	194	1	0	0	0	0	1	0	0	0	2558	1522	53	4	880	4	CACNG3	16	24373102	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1149703	24373102	65981651	1231	25387											
HS3ST4	9951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	26147136	26147136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HS3ST4	NM_006040	exon2	c.T938G	p.V313G	TTGAGGTGCTGGC	.	110	43	97	0	.	67	G	26147136	T	G	26147136	3	3	194	1	0	0	0	0	1	0	0	0	7367	1696	59	5	944	5	HS3ST4	16	26147136	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1774034	26147136	64207617	1232	25388											
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	27374493	27374493	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL4R	NM_000418	exon11	c.C1820G	p.S607X	CCTTCTCAAGCCT	.	40	20	34	0	.	227	G	27374493	C	G	27374493	4	3	194	1	0	0	0	0	0	1	0	0	7698	838	29	4	1872	4	IL4R	16	27374493	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1227357	27374493	62980260	1233	25389											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27448852	27448852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL21R	NM_181079	exon5	c.A262T	p.S88C	TCCTGCAGCCTCC	.	65	31	72	0	.	660	T	27448852	A	T	27448852	3	4	194	1	0	0	0	0	1	0	0	0	7671	188	7	4	206	4	IL21R	16	27448852	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	74359	27448852	62905901	1234	25390											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27509073	27509073	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GTF3C1	NM_001520	exon14	c.A2235G	p.P745P	TCCACTTGGGCCC	.	116	53	125	0	.	94	C	27509073	T	C	27509073	2	2	194	1	0	0	0	0	0	0	0	1	6872	1799	63	2		2	GTF3C1	16	27509073	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	60221	27509073	62845680	1235	25391											
KIAA0556	23247	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27760972	27760972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA0556	NM_015202	exon16	c.C2691G	p.H897Q	ACTTCACGAGTCA	.	108	54	143	1	.	141	G	27760972	C	G	27760972	3	3	194	1	0	0	0	0	1	0	0	0	8183	535	19	4	2753	4	KIAA0556	16	27760972	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	251899	27760972	62593781	1236	25392											
C16orf54	283897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29755668	29755668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_175900	exon2	c.A605T	p.Q202L	CGTGGCTGGAGGC	.	99	52	93	0	.	.	A	29755668	T	A	29755668	3	1	194	1	0	0	0	0	1	0	0	0	1819	1580	55	4	73	4	C16orf54	16	29755668	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1994696	29755668	60599085	1237	25393											
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29906726	29906726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEZ6L2	NM_001243332	exon5	c.G707T	p.G236V	GGGGATCCCCCAC	.	74	34	80	0	.	92	A	29906726	C	A	29906726	3	1	194	1	0	0	0	0	1	0	0	0	14144	855	30	3	2120	3	SEZ6L2	16	29906726	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	151058	29906726	60448027	1238	25394											
FBRS	64319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30680873	30680873	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBRS	NM_001105079	exon12	c.G1290C	p.P430P	CCCACCGGGAGCC	.	72	32	64	0	.	23	C	30680873	G	C	30680873	2	2	194	1	0	0	0	0	0	0	0	1	5707	1103	39	4		4	FBRS	16	30680873	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	774147	30680873	59673880	1239	25395											
PHKG2	5261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30764551	30764551	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKG2	NM_001172432	exon5	c.327-2A>T	.	TCCCTTAGGATGC	.	42	20	57	0	.	334	T	30764551	A	T	30764551	5	4	194	1	0	0	0	0	0	0	1	0	11847	434	15	4	339	4	PHKG2	16	30764551	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	83678	30764551	59590202	1240	25396											
ORAI3	93129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30965031	30965031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ORAI3	NM_152288	exon2	c.A754G	p.M252V	GCCATCATGGTAC	.	47	25	57	0	.	68	G	30965031	A	G	30965031	3	3	194	1	0	0	0	0	1	0	0	0	11259	217	8	2	760	2	ORAI3	16	30965031	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	200480	30965031	59389722	1241	25397											
PYDC1	260434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31228226	31228226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PYDC1	NM_152901	exon1	c.G124T	p.G42C	GCGCGCCCCGCGG	.	86	44	97	0	.	68	A	31228226	C	A	31228226	3	1	194	1	0	0	0	0	1	0	0	0	12858	623	22	3	149	3	PYDC1	16	31228226	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	263195	31228226	59126527	1242	25398											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419776	31419776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGAD	NM_005353	exon10	c.A1040T	p.Q347L	CCTTCCAGCACGA	.	58	32	60	0	.	226	T	31419776	A	T	31419776	3	4	194	1	0	0	0	0	1	0	0	0	7884	188	7	4	1078	4	ITGAD	16	31419776	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	191550	31419776	58934977	1243	25399											
ITGAD	3681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31424529	31424529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGAD	NM_005353	exon16	c.T1958C	p.V653A	CCACCGTCTGTCT	.	70	32	57	1	.	226	C	31424529	T	C	31424529	3	2	194	1	0	0	0	0	1	0	0	0	7884	1667	58	2	2020	2	ITGAD	16	31424529	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4753	31424529	58930224	1244	25400											
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31477974	31477974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMC5	NM_001105247	exon6	c.A2572T	p.I858F	GGCCGCATCCACC	.	47	20	50	0	.	24	T	31477974	A	T	31477974	3	4	194	1	0	0	0	0	1	0	0	0	954	217	8	4	2908	4	ARMC5	16	31477974	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	53445	31477974	58876779	1245	25401											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47622970	47622970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKB	NM_000293	exon10	c.T1025C	p.L342S	CATCATTGGAAGA	.	26	23	72	0	.	154	C	47622970	T	C	47622970	3	2	194	1	0	0	0	0	1	0	0	0	11845	1821	63	2	1122	2	PHKB	16	47622970	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	16144996	47622970	42731783	1246	25402											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47727355	47727355	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKB	NM_000293	exon28	c.A2832T	p.R944R	TGACCGAGTGTGG	.	70	59	148	0	.	154	T	47727355	A	T	47727355	2	4	194	1	0	0	0	0	0	0	0	1	11845	291	11	4		4	PHKB	16	47727355	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	104385	47727355	42627398	1247	25403											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49764842	49764842	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF423	NM_015069	exon3	c.C117T	p.S39S	CGCACGGCTGGTT	.	45	38	101	0	.	228	A	49764842	G	A	49764842	2	1	194	1	0	0	0	0	0	0	0	1	17895	1194	42	3		3	ZNF423	16	49764842	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2037487	49764842	40589911	1248	25404											
RBL2	5934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53498136	53498136	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RBL2	NM_005611	exon12	c.1561-2A>G	.	TTTTATAGGGTAT	.	30	25	50	0	.	841	G	53498136	A	G	53498136	5	3	194	1	0	0	0	0	0	0	1	0	13110	434	15	2	1605	2	RBL2	16	53498136	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3733294	53498136	36856617	1249	25405											
SLC12A3	6559	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56936357	56936357	+	Missense_Mutation	SNP	C	C	A	rs13306666	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A3	NM_000339	exon24	c.C2820A	p.N940K	TGTCAACGAGATG	.	27	24	89	0	C|0.998;T|0.002	155	A	56936357	C	A	56936357	3	1	194	1	0	0	0	0	1	0	0	0	14384	535	19	1	2914	1	SLC12A3	16	56936357	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3438221	56936357	33418396	1250	25406											
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57935438	57935438	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNGB1	NM_001297	exon28	c.C2886T	p.L962L	CTGAAAGAGTGCG	.	37	32	59	0	.	137	A	57935438	G	A	57935438	2	1	194	1	0	0	0	0	0	0	0	1	3600	929	33	3		3	CNGB1	16	57935438	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	999081	57935438	32419315	1251	25407											
CCDC113	29070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58293762	58293762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC113	NM_014157	exon5	c.A551T	p.N184I	AGGATAATATGAA	.	89	81	190	0	.	90	T	58293762	A	T	58293762	3	4	194	1	0	0	0	0	1	0	0	0	2750	101	4	4	569	4	CCDC113	16	58293762	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	358324	58293762	32060991	1252	25408											
PRSS54	221191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58320072	58320072	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRSS54	NM_001080492	exon5	c.A291C	p.I97I	GTTACTTATACCC	.	49	38	115	0	.	70	G	58320072	T	G	58320072	2	3	194	1	0	0	0	0	0	0	0	1	12633	1744	61	5		5	PRSS54	16	58320072	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	26310	58320072	32034681	1253	25409											
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66431975	66431975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH5	NM_001795	exon9	c.A1451T	p.Q484L	CCTACCAGCCCAA	.	51	43	128	0	.	525	T	66431975	A	T	66431975	3	4	194	1	0	0	0	0	1	0	0	0	3113	188	7	4	1481	4	CDH5	16	66431975	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8111903	66431975	23922778	1254	25410											
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66670433	66670433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CMTM4	NM_178818	exon2	c.C238T	p.P80S	CACACGGGGAGCA	.	34	29	62	0	.	227	A	66670433	G	A	66670433	3	1	194	1	0	0	0	0	1	0	0	0	3585	1232	43	3	486	3	CMTM4	16	66670433	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	238458	66670433	23684320	1255	25411											
PLEKHG4	25894	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67322137	67322137	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHG4	NM_001129728	exon20	c.G3288A	p.S1096S	GGCCTCGAACTCC	.	19	5	46	0	.	92	A	67322137	G	A	67322137	2	1	194	1	0	0	0	0	0	0	0	1	12071	1045	37	1		1	PLEKHG4	16	67322137	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	651704	67322137	23032616	1256	25412											
KCTD19	146212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67325322	67325322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCTD19	NM_001100915	exon14	c.T2455C	p.Y819H	GTGCATAAAACAT	.	50	46	136	0	.	69	G	67325322	A	G	67325322	3	3	194	1	0	0	0	0	1	0	0	0	8106	362	13	2	337	2	KCTD19	16	67325322	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3185	67325322	23029431	1257	25413											
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67375858	67375858	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC36	NM_018296	exon2	c.71-2A>C	.	CTTTTCAGAACTG	.	34	30	68	0	.	90	C	67375858	A	C	67375858	5	2	194	1	0	0	0	0	0	0	1	0	8990	202	7	5	75	5	LRRC36	16	67375858	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	50536	67375858	22978895	1258	25414											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67909967	67909967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDC4	NM_014329	exon2	c.A202G	p.T68A	CTTCGGACCATGC	.	30	25	96	0	.	92	G	67909967	A	G	67909967	3	3	194	1	0	0	0	0	1	0	0	0	4908	275	10	2	208	2	EDC4	16	67909967	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	534109	67909967	22444786	1259	25415											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70995883	70995883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HYDIN	NM_001270974	exon38	c.C5947A	p.L1983M	TTTCCAGGCTTTC	.	62	34	110	0	.	92	T	70995883	G	T	70995883	3	4	194	1	0	0	0	0	1	0	0	0	7467	991	35	3	9614	3	HYDIN	16	70995883	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3085916	70995883	19358870	1260	25416											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76523604	76523604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTNAP4	NM_138994	exon12	c.A1685T	p.Q562L	TCATACAGCACAA	.	49	40	119	0	.	70	T	76523604	A	T	76523604	3	4	194	1	0	0	0	0	1	0	0	0	3649	188	7	4	1967	4	CNTNAP4	16	76523604	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5527721	76523604	13831149	1261	25417											
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81248727	81248727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L2	NM_001076780	exon3	c.T536A	p.V179D	TCCTGGACCTGGA	.	37	29	107	0	.	92	T	81248727	A	T	81248727	3	4	194	1	0	0	0	0	1	0	0	0	11965	275	10	4	7076	4	PKD1L2	16	81248727	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4725123	81248727	9106026	1262	25418											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84230327	84230327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAD2	NM_139174	exon10	c.T1847C	p.V616A	GGGCTGTGGGGAA	.	26	24	58	0	.	68	C	84230327	T	C	84230327	3	2	194	1	0	0	0	0	1	0	0	0	232	1696	59	2	1885	2	ADAD2	16	84230327	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2981600	84230327	6124426	1263	25419											
CDH15	1013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89246648	89246648	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH15	NM_004933	exon3	c.G242C	p.S81T	TCTACAGCATCCA	.	37	27	84	0	.	523	C	89246648	G	C	89246648	3	2	194	1	0	0	0	0	1	0	0	0	3100	971	34	4	252	4	CDH15	16	89246648	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5016321	89246648	1108105	1264	25420											
ANKRD11	29123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89348451	89348451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD11	NM_001256183	exon9	c.A4499C	p.Q1500P	GGCTTCTGCTCGT	.	11	10	36	0	.	139	G	89348451	T	G	89348451	3	3	194	1	0	0	0	0	1	0	0	0	639	1580	55	5	3512	5	ANKRD11	16	89348451	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	101803	89348451	1006302	1265	25421											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350278	89350278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD11	NM_001256183	exon9	c.A2672G	p.D891G	CGGCTGTCCCGCC	.	41	38	79	0	.	139	C	89350278	T	C	89350278	3	2	194	1	0	0	0	0	1	0	0	0	639	1667	58	2	5339	2	ANKRD11	16	89350278	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1827	89350278	1004475	1266	25422											
DEF8	54849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90021593	90021593	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DEF8	NM_207514	exon4	c.G324A	p.L108L	TGAGCTGCCCCCT	.	13	11	30	0	.	68	A	90021593	G	A	90021593	2	1	194	1	0	0	0	0	0	0	0	1	4387	1306	46	3		3	DEF8	16	90021593	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	671315	90021593	333160	1267	25423											
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	1538573	1538573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCARF1	NM_003693	exon11	c.A1972C	p.T658P	GGCCAGTGGCTGA	.	46	39	71	0	.	91	G	1538573	T	G	1538573	3	3	194	1	0	0	0	0	1	0	0	0	13883	1696	59	5	524	5	SCARF1	17	1538573	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		1538573	79656637	1268	25424											
OR1D2	4991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2996103	2996103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1D2	NM_002548	exon1	c.T188A	p.L63Q	TTGGCCAGGAAGA	.	110	91	174	0	.	69	T	2996103	A	T	2996103	3	4	194	1	0	0	0	0	1	0	0	0	10953	188	7	4	753	4	OR1D2	17	2996103	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1457530	2996103	78199107	1269	25425											
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3100889	3100889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1A2	NM_012352	exon1	c.T77A	p.V26D	ATAATGTCTTCTT	.	49	36	96	0	.	70	A	3100889	T	A	3100889	3	1	194	1	0	0	0	0	1	0	0	0	10950	1667	58	4	79	4	OR1A2	17	3100889	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	104786	3100889	78094321	1270	25426											
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7189182	7189182	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC2A4	NM_001042	exon10	c.C1281T	p.N427N	CTCCAACTGGACG	.	50	44	111	0	.	90	T	7189182	C	T	7189182	2	4	194	1	0	0	0	0	0	0	0	1	14546	564	20	3		3	SLC2A4	17	7189182	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	4088293	7189182	74006028	1271	25427											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	TP53,bile_duct,carcinoma,0	TP53	NM_000546	exon6	c.A614G	p.Y205C	TCCAAATACTCCA	.	73	60	133	0	.	70225	C	7578235	T	C	7578235	3	2	194	1	0	0	0	0	1	0	0	0	16378	1406	49	2	680	2	TP53	17	7578235	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	389053	7578235	73616975	1272	25428											
MFSD6L	162387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8700730	8700730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MFSD6L	NM_152599	exon1	c.G1709A	p.G570E	TCTGTCCCCTGCT	.	28	27	45	0	.	90	T	8700730	C	T	8700730	3	4	194	1	0	0	0	0	1	0	0	0	9536	623	22	3	55	3	MFSD6L	17	8700730	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1122495	8700730	72494480	1273	25429											
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	9674809	9674809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001220493	exon6	c.G935T	p.G312V	AGTTACCCCTCCT	.	27	17	42	0	.	.	A	9674809	C	A	9674809	3	1	194	1	0	0	0	0	1	0	0	0	4497	623	22	3	7	3	DHRS7C	17	9674809	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	974079	9674809	71520401	1274	25430											
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9774103	9774103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLP2R	NM_004246	exon10	c.A1096G	p.I366V	CTTCTCATTTCTA	.	48	34	134	0	.	524	G	9774103	A	G	9774103	3	3	194	1	0	0	0	0	1	0	0	0	6453	217	8	2	1134	2	GLP2R	17	9774103	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	99294	9774103	71421107	1275	25431											
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10416941	10416941	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH1	NM_005963	exon10	c.805+2T>A	.	TTACTCACATGTT	.	44	39	106	0	.	171	T	10416941	A	T	10416941	5	4	194	1	0	0	0	0	0	0	1	0	10029	173	6	4	5140	4	MYH1	17	10416941	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	642838	10416941	70778269	1276	25432											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10432930	10432930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH2	NM_017534	exon24	c.T3068C	p.V1023A	GTGTTGACTTTGT	.	52	40	128	0	.	194	G	10432930	A	G	10432930	3	3	194	1	0	0	0	0	1	0	0	0	10035	275	10	2	2825	2	MYH2	17	10432930	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	15989	10432930	70762280	1277	25433											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11809030	11809030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH9	NM_001372	exon61	c.G11653A	p.D3885N	GCCCTAGATTTTG	.	39	32	84	0	.	168	A	11809030	G	A	11809030	3	1	194	1	0	0	0	0	1	0	0	0	4608	942	33	3	11895	3	DNAH9	17	11809030	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1376100	11809030	69386180	1278	25434											
CENPV	201161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16253335	16253335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CENPV	NM_181716	exon2	c.A419G	p.Q140R	AGGCCCTGGTATT	.	132	111	302	1	.	90	C	16253335	T	C	16253335	3	2	194	1	0	0	0	0	1	0	0	0	3243	1580	55	2	415	2	CENPV	17	16253335	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4444305	16253335	64941875	1279	25435											
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16332223	16332223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPV2	NM_016113	exon10	c.T1514A	p.L505Q	TGGTGCTGGGCTG	.	28	24	47	0	.	91	A	16332223	T	A	16332223	3	1	194	1	0	0	0	0	1	0	0	0	16593	1580	55	4	1548	4	TRPV2	17	16332223	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	78888	16332223	64862987	1280	25436											
ZNF287	57336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16455335	16455335	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF287	NM_020653	exon6	c.T2121A	p.N707K	ACATTCATTACAT	.	217	76	101	0	.	90	T	16455335	A	T	16455335	3	4	194	1	0	0	0	0	1	0	0	0	17822	214	8	4	168	4	ZNF287	17	16455335	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	123112	16455335	64739875	1281	25437											
TNFRSF13B	23495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16852254	16852254	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF13B	NM_012452	exon3	c.T243C	p.H81H	CAGGAGATGGTCA	.	102	38	81	1	.	228	G	16852254	A	G	16852254	2	3	194	1	0	0	0	0	0	0	0	1	16284	330	12	2		2	TNFRSF13B	17	16852254	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	396919	16852254	64342956	1282	25438											
FBXW10	10517	broad.mit.edu;mdanderson.org	37	17	18653220	18653220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBXW10	NM_001267585	exon3	c.T856C	p.S286P	CACCTCTCCAAGT	.	506	156	652	0	.	91	C	18653220	T	C	18653220	3	2	194	1	0	0	0	0	1	0	0	0	5763	1551	54	2	866	2	FBXW10	17	18653220	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1800966	18653220	62541990	1283	25439											
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19286534	19286534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAPK7	NM_002749	exon7	c.A2441T	p.Q814L	ACCTCCAGGACCC	.	36	17	61	0	.	1402	T	19286534	A	T	19286534	3	4	194	1	0	0	0	0	1	0	0	0	9282	188	7	4	2463	4	MAPK7	17	19286534	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	633314	19286534	61908676	1284	25440											
USP22	23326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	20919135	20919135	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP22	NM_015276	exon6	c.A768T	p.A256A	GTAGCCTGCTAGG	.	41	16	46	0	.	636	A	20919135	T	A	20919135	2	1	194	1	0	0	0	0	0	0	0	1	17051	1567	55	4		4	USP22	17	20919135	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1632601	20919135	60276075	1285	25441											
NLK	51701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	26499544	26499544	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLK	NM_016231	exon7	c.T1049A	p.L350X	TGTAGTTGGATTT	.	61	25	73	0	.	1403	A	26499544	T	A	26499544	4	1	194	1	0	0	0	0	0	1	0	0	10466	1826	63	4	1075	4	NLK	17	26499544	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5580409	26499544	54695666	1286	25442											
CCL2	6347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32583296	32583296	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL2	NM_002982	exon2	c.A132G	p.S44S	GATCTCAGTGCAG	.	36	12	49	0	.	91	G	32583296	A	G	32583296	2	3	194	1	0	0	0	0	0	0	0	1	2891	175	7	2		2	CCL2	17	32583296	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6083752	32583296	48611914	1287	25443											
CCL11	6356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32612882	32612882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL11	NM_002986	exon1	c.C55A	p.P19T	TTCAGCCCCCAGG	.	43	21	44	0	.	90	A	32612882	C	A	32612882	3	1	194	1	0	0	0	0	1	0	0	0	2883	623	22	3	57	3	CCL11	17	32612882	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	29586	32612882	48582328	1288	25444											
NLE1	54475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33462285	33462285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLE1	NM_018096	exon10	c.G1197T	p.W399C	GCCATCCCACAGC	.	90	46	108	0	.	290	A	33462285	C	A	33462285	3	1	194	1	0	0	0	0	1	0	0	0	10460	624	22	3	276	3	NLE1	17	33462285	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	849403	33462285	47732925	1289	25445											
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495163	33495163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC45B	NM_001267052	exon10	c.T1235A	p.L412Q	TTGACCTGGGCAA	.	101	44	114	0	.	157	A	33495163	T	A	33495163	3	1	194	1	0	0	0	0	1	0	0	0	16986	1580	55	4	1269	4	UNC45B	17	33495163	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	32878	33495163	47700047	1290	25446											
CCL18	6362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	34398401	34398401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL18	NM_002988	exon3	c.A270T	p.X90C	TGCCTGAGGGGCC	.	130	72	146	0	.	514	T	34398401	A	T	34398401	3	4	194	1	0	0	0	0	1	0	0	0	2889	317	11	4	280	4	CCL18	17	34398401	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	903238	34398401	46796809	1291	25447											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36485679	36485679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR179	NM_001004334	exon11	c.G3773T	p.S1258I	TTGCCACTGTCTG	.	44	20	43	0	.	93	A	36485679	C	A	36485679	3	1	194	1	0	0	0	0	1	0	0	0	6674	565	20	3	3334	3	GPR179	17	36485679	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2087278	36485679	44709531	1292	25448											
PCGF2	7703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36891668	36891668	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCGF2	NM_007144	exon11	c.C843A	p.T281T	GGATGGGGTGGCT	.	55	25	50	0	.	658	T	36891668	G	T	36891668	2	4	194	1	0	0	0	0	0	0	0	1	11575	1219	43	3		3	PCGF2	17	36891668	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	405989	36891668	44303542	1293	25449											
IGFBP4	3487	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38612731	38612731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGFBP4	NM_001552	exon4	c.A673G	p.K225E	CGTGGCAAGTGCT	.	79	39	123	1	.	522	G	38612731	A	G	38612731	3	3	194	1	0	0	0	0	1	0	0	0	7581	131	5	2	687	2	IGFBP4	17	38612731	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1721063	38612731	42582479	1294	25450											
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38721654	38721654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR7	NM_001838	exon1	c.T8A	p.L3Q	TCACCCAGGTCCA	.	58	15	71	0	.	659	T	38721654	A	T	38721654	3	4	194	1	0	0	0	0	1	0	0	0	2946	188	7	4	1140	4	CCR7	17	38721654	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	108923	38721654	42473556	1295	25451											
KRT24	192666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38855854	38855854	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT24	NM_019016	exon6	c.A1203G	p.S401S	AATTTCTGACAGC	.	73	29	68	0	.	90	C	38855854	T	C	38855854	2	2	194	1	0	0	0	0	0	0	0	1	8461	1567	55	2		2	KRT24	17	38855854	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	134200	38855854	42339356	1296	25452											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39137242	39137242	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_182497	exon6	c.G849A	p.Q283Q	ACTGACCTGAACA	.	103	48	85	0	.	.	T	39137242	C	T	39137242	2	4	194	1	0	0	0	0	0	0	0	1	8478	695	24	3		3	KRT40	17	39137242	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	281388	39137242	42057968	1297	25453											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140425	39140425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_182497	exon3	c.T101A	p.L34H	CCGGGGAGACAAG	.	83	36	110	0	.	.	T	39140425	A	T	39140425	3	4	194	1	0	0	0	0	1	0	0	0	8478	304	11	4	1222	4	KRT40	17	39140425	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3183	39140425	42054785	1298	25454											
KRTAP9-9	81870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39411764	39411764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_030975	exon1	c.T127A	p.C43S	AGCTGCTGCCAGC	.	37	18	49	0	.	.	A	39411764	T	A	39411764	3	1	194	1	0	0	0	0	1	0	0	0	8577	1580	55	4	129	4	KRTAP9-9	17	39411764	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	271339	39411764	41783446	1299	25455											
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39619248	39619248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT32	NM_002278	exon6	c.C1051G	p.L351V	GGGCCAGCTGGGA	.	76	39	71	0	.	90	C	39619248	G	C	39619248	3	2	194	1	0	0	0	0	1	0	0	0	8468	962	34	4	303	4	KRT32	17	39619248	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	207484	39619248	41575962	1300	25456											
KRT35	3886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39635633	39635633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT35	NM_002280	exon3	c.A677G	p.E226G	AGCTCCTCCTTCA	.	104	44	89	1	.	92	C	39635633	T	C	39635633	3	2	194	1	0	0	0	0	1	0	0	0	8472	1551	54	2	710	2	KRT35	17	39635633	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	16385	39635633	41559577	1301	25457											
KRT15	3866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39673060	39673060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT15	NM_002275	exon3	c.G738T	p.E246D	TCTCACCTCTTCG	.	40	14	45	0	.	90	A	39673060	C	A	39673060	3	1	194	1	0	0	0	0	1	0	0	0	8452	695	24	3	656	3	KRT15	17	39673060	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	37427	39673060	41522150	1302	25458											
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39728014	39728014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT9	NM_000226	exon1	c.T231C	p.S77S	ACCCCCAGATCCT	.	151	52	162	0	.	92	G	39728014	A	G	39728014	2	3	194	1	0	0	0	0	0	0	0	1	8501	175	7	2		2	KRT9	17	39728014	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	54954	39728014	41467196	1303	25459											
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40345476	40345476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GHDC	NM_001142622	exon3	c.G124T	p.G42W	GGGCCCCCCATGC	.	29	12	33	0	.	90	A	40345476	C	A	40345476	3	1	194	1	0	0	0	0	1	0	0	0	6369	623	22	3	1589	3	GHDC	17	40345476	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	617462	40345476	40849734	1304	25460											
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41004309	41004309	+	Missense_Mutation	SNP	T	T	A	rs438287	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AOC3	NM_003734	exon1	c.T949A	p.Y317N	CAGTTCTATCCCC	.	55	26	42	0	T|0.720;C|0.280	516	A	41004309	T	A	41004309	3	1	194	1	0	0	0	0	1	0	0	0	728	1522	53	4	951	4	AOC3	17	41004309	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	658833	41004309	40190901	1305	25461											
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41341610	41341610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBR1	NM_031862	exon8	c.A486T	p.R162S	GTTCAGAGAACAA	.	99	49	115	0	.	130	T	41341610	A	T	41341610	3	4	194	1	0	0	0	0	1	0	0	0	10200	301	11	4	512	4	NBR1	17	41341610	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	337301	41341610	39853600	1306	25462											
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41352594	41352594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBR1	NM_031862	exon17	c.G2437C	p.E813Q	ATCCCAGAGGTAG	.	180	75	207	0	.	130	C	41352594	G	C	41352594	3	2	194	1	0	0	0	0	1	0	0	0	10200	943	33	4	2499	4	NBR1	17	41352594	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	10984	41352594	39842616	1307	25463											
FZD2	2535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42635241	42635241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FZD2	NM_001466	exon1	c.G185T	p.G62V	TTCTGGGCCACAC	.	69	36	85	0	.	660	T	42635241	G	T	42635241	3	4	194	1	0	0	0	0	1	0	0	0	6130	1203	42	3	187	3	FZD2	17	42635241	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1282647	42635241	38559969	1308	25464											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42750732	42750732	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C17orf104	NM_001145080	exon7	c.2458-2A>C	.	TCCCTCAGGTTGT	.	63	24	49	0	.	22	C	42750732	A	C	42750732	5	2	194	1	0	0	0	0	0	0	1	0	1851	202	7	5	2482	5	C17orf104	17	42750732	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	115491	42750732	38444478	1309	25465											
CCDC103	388389	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42979908	42979908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC103	NM_001258395	exon4	c.T452A	p.L151Q	TGGCACTGGCTGA	.	58	23	82	1	.	69	A	42979908	T	A	42979908	3	1	194	1	0	0	0	0	1	0	0	0	2738	1580	55	4	462	4	CCDC103	17	42979908	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	229176	42979908	38215302	1310	25466											
HOXB6	3216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46675506	46675506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXB6	NM_018952	exon3	c.T7A	p.S3T	AATAGGAACTCAT	.	67	31	68	0	.	90	T	46675506	A	T	46675506	3	4	194	1	0	0	0	0	1	0	0	0	7305	246	9	4	675	4	HOXB6	17	46675506	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3695598	46675506	34519704	1311	25467											
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47679227	47679227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPOP	NM_001007228	exon9	c.A980G	p.Y327C	ACTCACTAGTTGA	.	76	37	99	0	.	660	C	47679227	T	C	47679227	3	2	194	1	0	0	0	0	1	0	0	0	15083	1536	53	2	152	2	SPOP	17	47679227	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1003721	47679227	33515983	1312	25468											
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47699405	47699405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPOP	NM_001007228	exon3	c.A103T	p.M35L	TCCACATGTAGGA	.	120	55	148	0	.	660	A	47699405	T	A	47699405	3	1	194	1	0	0	0	0	1	0	0	0	15083	1464	51	4	1053	4	SPOP	17	47699405	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	20178	47699405	33495805	1313	25469											
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48597032	48597032	+	Missense_Mutation	SNP	T	T	A	rs183786523	by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCBPAP	NM_032133	exon7	c.T929A	p.L310Q	GTCGACTGGAATA	.	82	45	109	0	T|1.000;C|0.000	230	A	48597032	T	A	48597032	3	1	194	1	0	0	0	0	1	0	0	0	10019	1580	55	4	955	4	MYCBPAP	17	48597032	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	897627	48597032	32598178	1314	25470											
AKAP1	8165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	55187406	55187406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP1	NM_001242902	exon4	c.G1735T	p.D579Y	AGCATGGATTCCG	.	77	27	77	0	.	227	T	55187406	G	T	55187406	3	4	194	1	0	0	0	0	1	0	0	0	445	1174	41	3	1741	3	AKAP1	17	55187406	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	6590374	55187406	26007804	1315	25471											
MPO	4353	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	56357776	56357776	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MPO	NM_000250	exon2	c.G199T	p.E67X	CCTCCTCCATGGA	.	165	75	191	1	.	156	A	56357776	C	A	56357776	4	1	194	1	0	0	0	0	0	1	0	0	9732	864	30	3	2082	3	MPO	17	56357776	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1170370	56357776	24837434	1316	25472											
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58260585	58260585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP32	NM_032582	exon31	c.A4064T	p.D1355V	AGCACGTCCTCTT	.	130	70	137	0	.	704	A	58260585	T	A	58260585	3	1	194	1	0	0	0	0	1	0	0	0	17060	1667	58	4	766	4	USP32	17	58260585	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1902809	58260585	22934625	1317	25473											
BRIP1	83990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	59793426	59793426	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRIP1	NM_032043	exon18	c.2380-2A>T	.	TCAACCTAATAAT	.	39	16	54	0	.	660	A	59793426	T	A	59793426	5	1	194	1	0	0	0	0	0	0	1	0	1514	1536	53	4	1387	4	BRIP1	17	59793426	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1532841	59793426	21401784	1318	25474											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	60744225	60744225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRC2	NM_006039	exon5	c.G967T	p.E323X	AACTGGGAGAGTG	.	79	37	98	0	.	117	T	60744225	G	T	60744225	4	4	194	1	0	0	0	0	0	1	0	0	9758	1175	41	3	985	3	MRC2	17	60744225	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	950799	60744225	20450985	1319	25475											
TANC2	26115	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61432399	61432399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TANC2	NM_025185	exon12	c.G2008T	p.V670L	TATCTAGTGTTAA	.	91	42	108	1	.	24	T	61432399	G	T	61432399	3	4	194	1	0	0	0	0	1	0	0	0	15542	1029	36	3	2054	3	TANC2	17	61432399	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	688174	61432399	19762811	1320	25476											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65907751	65907751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BPTF	NM_004459	exon13	c.A4129G	p.S1377G	TCCAAGAGTGCTT	.	122	49	126	0	.	94	G	65907751	A	G	65907751	3	3	194	1	0	0	0	0	1	0	0	0	1495	304	11	2	4179	2	BPTF	17	65907751	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4475352	65907751	15287459	1321	25477											
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72351335	72351335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF19	NM_153209	exon20	c.T2881C	p.S961P	GACTCCTCACCCC	.	47	14	58	2	.	90	C	72351335	T	C	72351335	3	2	194	1	0	0	0	0	1	0	0	0	8282	1551	54	2	2959	2	KIF19	17	72351335	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6443584	72351335	8843875	1322	25478											
FOXJ1	2302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74133497	74133497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXJ1	NM_001454	exon3	c.G1203T	p.E401D	CCCAGCCTCAAAG	.	10	4	19	0	.	227	A	74133497	C	A	74133497	3	1	194	1	0	0	0	0	1	0	0	0	6011	680	24	3	66	3	FOXJ1	17	74133497	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1782162	74133497	7061713	1323	25479											
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74151646	74151646	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF157	NM_052916	exon15	c.A1695G	p.G565G	TACCTCTCCTTCT	.	55	17	52	0	.	228	C	74151646	T	C	74151646	2	2	194	1	0	0	0	0	0	0	0	1	13454	1538	54	2		2	RNF157	17	74151646	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	18149	74151646	7043564	1324	25480											
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	75196640	75196640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC14L1	NM_001204408	exon11	c.G894T	p.M298I	GATCATGTGTCAG	.	60	25	92	0	.	92	T	75196640	G	T	75196640	3	4	194	1	0	0	0	0	1	0	0	0	13981	1377	48	3	920	3	SEC14L1	17	75196640	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1044994	75196640	5998570	1325	25481											
TK1	7083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76170929	76170929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TK1	NM_003258	exon7	c.T616C	p.C206R	CTGGGCAGTTCTC	.	49	22	65	0	.	227	G	76170929	A	G	76170929	3	3	194	1	0	0	0	0	1	0	0	0	15929	188	7	2	92	2	TK1	17	76170929	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	974289	76170929	5024281	1326	25482											
TMEM105	284186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79287489	79287489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM105	NM_178520	exon3	c.G352A	p.G118R	ACAGCCCCTTCAT	.	65	52	138	0	.	91	T	79287489	C	T	79287489	3	4	194	1	0	0	0	0	1	0	0	0	16016	623	22	3	41	3	TMEM105	17	79287489	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3116560	79287489	1907721	1327	25483											
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80887026	80887026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBCD	NM_005993	exon31	c.A2731T	p.S911C	CAGGCCAGTGAGA	.	18	15	32	0	.	22	T	80887026	A	T	80887026	3	4	194	1	0	0	0	0	1	0	0	0	15630	188	7	4	2853	4	TBCD	17	80887026	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1599537	80887026	308184	1328	25484											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	5396213	5396213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB41L3	NM_012307	exon19	c.A2960G	p.Y987C	GATTCATATGTGA	.	36	31	80	0	.	95	C	5396213	T	C	5396213	3	2	194	1	0	0	0	0	1	0	0	0	5154	1406	49	2	319	2	EPB41L3	18	5396213	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		5396213	72681035	1329	25485											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5416315	5416315	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB41L3	NM_012307	exon13	c.A1569G	p.T523T	GGGAGATGTGGGG	.	26	19	35	0	.	95	C	5416315	T	C	5416315	2	2	194	1	0	0	0	0	0	0	0	1	5154	1451	51	2		2	EPB41L3	18	5416315	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	20102	5416315	72660933	1330	25486											
TUBB6	84617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12325366	12325366	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUBB6	NM_032525	exon4	c.T578A	p.V193E	AGCTGGTGGAGAA	.	45	36	111	0	.	90	A	12325366	T	A	12325366	3	1	194	1	0	0	0	0	1	0	0	0	16757	1696	59	4	592	4	TUBB6	18	12325366	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6909051	12325366	65751882	1331	25487											
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18559965	18559965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROCK1	NM_005406	exon22	c.A2560G	p.T854A	AAAGTGTCTGCAA	.	47	20	60	0	.	1026	C	18559965	T	C	18559965	3	2	194	1	0	0	0	0	1	0	0	0	13517	1681	58	2	1552	2	ROCK1	18	18559965	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6234599	18559965	59517283	1332	25488											
MIB1	57534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19345790	19345790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIB1	NM_020774	exon2	c.T287A	p.I96N	TTGGCATTCGATG	.	49	32	59	0	.	526	A	19345790	T	A	19345790	3	1	194	1	0	0	0	0	1	0	0	0	9566	1493	52	4	293	4	MIB1	18	19345790	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	785825	19345790	58731458	1333	25489											
GATA6	2627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19757000	19757000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GATA6	NM_005257	exon3	c.G1220A	p.G407D	GCACCGGCCACTA	.	27	6	24	0	.	514	A	19757000	G	A	19757000	3	1	194	1	0	0	0	0	1	0	0	0	6258	1203	42	3	1226	3	GATA6	18	19757000	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	411210	19757000	58320248	1334	25490											
CABLES1	91768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	20774494	20774494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CABLES1	NM_001100619	exon3	c.A1000G	p.R334G	GATACCAGGAATG	.	53	29	62	0	.	522	G	20774494	A	G	20774494	3	3	194	1	0	0	0	0	1	0	0	0	2529	179	7	2	1064	2	CABLES1	18	20774494	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1017494	20774494	57302754	1335	25491											
C18orf8	29919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21104400	21104400	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C18orf8	NM_013326	exon12	c.A1014G	p.S338S	TTCTTCATCTTGG	.	55	21	64	0	.	91	G	21104400	A	G	21104400	2	3	194	1	0	0	0	0	0	0	0	1	1907	204	8	2		2	C18orf8	18	21104400	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	329906	21104400	56972848	1336	25492											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22669533	22669533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon7	c.G3802T	p.A1268S	TGTTTGCTTGAAC	.	102	40	110	0	.	275	A	22669533	C	A	22669533	3	1	194	1	0	0	0	0	1	0	0	0	17962	797	28	3	141	3	ZNF521	18	22669533	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1565133	22669533	55407715	1337	25493											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22806527	22806527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon4	c.T1355A	p.L452Q	TCATTTAGGTTAT	.	69	41	91	0	.	275	T	22806527	A	T	22806527	3	4	194	1	0	0	0	0	1	0	0	0	17962	420	15	4	2600	4	ZNF521	18	22806527	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	136994	22806527	55270721	1338	25494											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22807425	22807425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon4	c.A457T	p.R153W	ACAGCCTACTGCA	.	119	62	143	0	.	275	A	22807425	T	A	22807425	3	1	194	1	0	0	0	0	1	0	0	0	17962	1521	53	4	3498	4	ZNF521	18	22807425	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	898	22807425	55269823	1339	25495											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23854702	23854702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAF4B	NM_005640	exon4	c.T673C	p.S225P	AAGCCTTCAAGTT	.	164	71	186	0	.	71	C	23854702	T	C	23854702	3	2	194	1	0	0	0	0	1	0	0	0	15524	1783	62	2	687	2	TAF4B	18	23854702	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1047277	23854702	54222546	1340	25496											
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29039011	29039011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSG3	NM_001944	exon5	c.C388A	p.L130I	CGGGCTCTAAATG	.	165	67	176	0	.	98	A	29039011	C	A	29039011	3	1	194	1	0	0	0	0	1	0	0	0	4778	912	32	3	406	3	DSG3	18	29039011	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	5184309	29039011	49038237	1341	25497											
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	32444004	32444004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DTNA	NM_001390	exon16	c.A1640T	p.E547V	AGTTGGAGGGTCT	.	35	19	35	0	.	153	T	32444004	A	T	32444004	3	4	194	1	0	0	0	0	1	0	0	0	4788	304	11	4	1737	4	DTNA	18	32444004	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3404993	32444004	45633244	1342	25498											
RIT2	6014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	40554045	40554045	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RIT2	NM_001272077	exon3	c.T228A	p.A76A	CTGGCCAGCAGTG	.	252	134	296	1	.	1084	T	40554045	A	T	40554045	2	4	194	1	0	0	0	0	0	0	0	1	13387	175	7	4		4	RIT2	18	40554045	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8110041	40554045	37523203	1343	25499											
HAUS1	115106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43703286	43703286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HAUS1	NM_138443	exon6	c.A622G	p.M208V	AGAGGCATGGATG	.	190	82	258	0	.	91	G	43703286	A	G	43703286	3	3	194	1	0	0	0	0	1	0	0	0	6965	217	8	2	644	2	HAUS1	18	43703286	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3149241	43703286	34373962	1344	25500											
KATNAL2	83473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44589401	44589401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	KATNAL2,NS,carcinoma,-1	KATNAL2	NM_031303	exon6	c.A392T	p.E131V	CCAGTGAACTTGC	.	56	22	62	0	.	93	T	44589401	A	T	44589401	3	4	194	1	0	0	0	0	1	0	0	0	7986	246	9	4	410	4	KATNAL2	18	44589401	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	886115	44589401	33487847	1345	25501											
ATP8B1	5205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55338765	55338765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP8B1	NM_005603	exon17	c.A1867C	p.T623P	TAACAGTGTCAGC	.	130	54	154	0	.	587	G	55338765	T	G	55338765	3	3	194	1	0	0	0	0	1	0	0	0	1194	1696	59	5	1936	5	ATP8B1	18	55338765	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	10749364	55338765	22738483	1346	25502											
RAX	30062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	56936364	56936364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAX	NM_013435	exon3	c.T913A	p.C305S	GCCCGCACGGGTA	.	42	15	51	0	.	90	T	56936364	A	T	56936364	3	4	194	1	0	0	0	0	1	0	0	0	13096	159	6	4	131	4	RAX	18	56936364	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1597599	56936364	21140884	1347	25503											
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	57122130	57122130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCBE1	NM_133459	exon6	c.A607T	p.K203X	ACTCCTTGCATGT	.	64	27	76	0	.	93	A	57122130	T	A	57122130	4	1	194	1	0	0	0	0	0	1	0	0	2731	1821	63	4	637	4	CCBE1	18	57122130	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	185766	57122130	20955118	1348	25504											
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	59166656	59166656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH20	NM_031891	exon2	c.G484T	p.E162X	GACAATGAGCCCA	.	101	54	113	0	.	155	T	59166656	G	T	59166656	4	4	194	1	0	0	0	0	0	1	0	0	3106	1291	45	3	490	3	CDH20	18	59166656	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2044526	59166656	18910592	1349	25505											
SERPINB3	6317	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61322962	61322962	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SERPINB3	NM_006919	exon8	c.C1102G	p.P368A	GGAAAGGGTGATT	.	105	53	97	1	.	228	C	61322962	G	C	61322962	3	2	194	1	0	0	0	0	1	0	0	0	14102	1232	43	4	74	4	SERPINB3	18	61322962	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2156306	61322962	16754286	1350	25506											
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61562574	61562574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SERPINB2	NM_002575	exon3	c.T245C	p.M82T	GGTTCATGCAGCA	.	75	24	69	0	.	226	C	61562574	T	C	61562574	3	2	194	1	0	0	0	0	1	0	0	0	14101	1464	51	2	251	2	SERPINB2	18	61562574	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	239612	61562574	16514674	1351	25507											
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65180193	65180193	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSEL	NM_032160	exon2	c.T1683C	p.F561F	ACTCACAAATACC	.	109	44	105	0	.	157	G	65180193	A	G	65180193	2	3	194	1	0	0	0	0	0	0	0	1	4775	127	5	2		2	DSEL	18	65180193	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3617619	65180193	12897055	1352	25508											
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	66678301	66678301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC102B	NM_001093729	exon9	c.T1394C	p.V465A	TACGAGTGGAAGA	.	135	50	159	0	.	93	C	66678301	T	C	66678301	3	2	194	1	0	0	0	0	1	0	0	0	2737	1696	59	2	1416	2	CCDC102B	18	66678301	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1498108	66678301	11398947	1353	25509											
FAM69C	125704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72114218	72114218	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM69C	NM_001044369	exon2	c.A499T	p.S167C	CCAGGCTGCTGTT	.	61	32	60	0	.	68	A	72114218	T	A	72114218	3	1	194	1	0	0	0	0	1	0	0	0	5604	1580	55	4	772	4	FAM69C	18	72114218	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5435917	72114218	5963030	1354	25510											
THEG	51298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	362299	362299	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	THEG	NM_016585	exon8	c.C1041T	p.G347G	GTTGAGGCCCTTG	.	54	20	96	0	.	91	A	362299	G	A	362299	2	1	194	1	0	0	0	0	0	0	0	1	15854	1190	42	3		3	THEG	19	362299	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10		362299	58766684	1355	25511											
BSG	682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	578005	578005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BSG	NM_001728	exon2	c.A299T	p.E100V	TCGTGGAGGAGGA	.	49	10	57	1	.	90	T	578005	A	T	578005	3	4	194	1	0	0	0	0	1	0	0	0	1529	304	11	4	341	4	BSG	19	578005	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	215706	578005	58550978	1356	25512											
C19orf21	126353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	757065	757065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.C119T	p.A40V	CCGAGGCCAGCGG	.	72	38	77	1	.	91	T	757065	C	T	757065	3	4	194	1	0	0	0	0	1	0	0	0	1913	739	26	3	121	3	C19orf21	19	757065	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	179060	757065	58371918	1357	25513			1	25		4	4	1537	N	G_C_A	7.87236e-05
C19orf21	126353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758002	758002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.G1056T	p.Q352H	CGTGCAGCGGGAC	.	13	6	22	0	.	91	T	758002	G	T	758002	3	4	194	1	0	0	0	0	1	0	0	0	1913	962	34	3	1058	3	C19orf21	19	758002	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	937	758002	58370981	1358	25514			1	25		4	4	1537	N	G_C_A	7.87236e-05
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758534	758534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.G1588T	p.V530L	TGGGAGGTGGCTG	.	77	33	86	0	.	91	T	758534	G	T	758534	3	4	194	1	0	0	0	0	1	0	0	0	1913	1261	44	3	1590	3	C19orf21	19	758534	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	532	758534	58370449	1359	25515			1	25		4	4	1537	N	G_C_A	7.87236e-05
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758601	758601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.A1655T	p.E552V	AGAGGGAGAGTGT	.	129	58	153	0	.	91	T	758601	A	T	758601	3	4	194	1	0	0	0	0	1	0	0	0	1913	304	11	4	1657	4	C19orf21	19	758601	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	67	758601	58370382	1360	25516			1	25		4	4	1537	N	G_C_A	7.87236e-05
ELANE	1991	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	853327	853327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELANE	NM_001972	exon3	c.A290C	p.Q97P	CCCGGCAGGTGTT	.	138	54	152	1	.	91	C	853327	A	C	853327	3	2	194	1	0	0	0	0	1	0	0	0	5048	188	7	5	300	5	ELANE	19	853327	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	94726	853327	58275656	1361	25517											
ABCA7	10347	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1042061	1042061	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA7	NM_019112	exon5	c.303-2A>T	.	GTCCCCAGGGTCT	.	13	4	19	0	.	98	T	1042061	A	T	1042061	5	4	194	1	0	0	0	0	0	0	1	0	37	202	7	4	315	4	ABCA7	19	1042061	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	188734	1042061	58086922	1362	25518											
APC2	10297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1460853	1460853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APC2	NM_005883	exon12	c.C1518G	p.H506Q	GCTCCACCAGGTA	.	81	11	109	0	.	290	G	1460853	C	G	1460853	3	3	194	1	0	0	0	0	1	0	0	0	764	506	18	4	1560	4	APC2	19	1460853	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	418792	1460853	57668130	1363	25519											
ZFR2	23217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3811305	3811305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFR2	NM_015174	exon15	c.T2302A	p.S768T	CCAGGGACTCGAG	.	33	13	44	0	.	70	T	3811305	A	T	3811305	3	4	194	1	0	0	0	0	1	0	0	0	17657	275	10	4	537	4	ZFR2	19	3811305	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2350452	3811305	55317678	1364	25520											
ZFR2	23217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3831767	3831767	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFR2	NM_015174	exon4	c.C489G	p.S163S	TCCCGAGGACAAG	.	18	6	42	0	.	70	C	3831767	G	C	3831767	2	2	194	1	0	0	0	0	0	0	0	1	17657	987	35	4		4	ZFR2	19	3831767	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	20462	3831767	55297216	1365	25521											
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4117490	4117490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP2K2	NM_030662	exon2	c.A230G	p.E77G	CCCAGCTCTGAGA	.	55	16	70	0	.	510	C	4117490	T	C	4117490	3	2	194	1	0	0	0	0	1	0	0	0	9237	1551	54	2	1012	2	MAP2K2	19	4117490	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	285723	4117490	55011493	1366	25522											
SIRT6	51548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4175099	4175099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIRT6	NM_016539	exon7	c.A664T	p.S222C	TCCCGCTGGGCCG	.	35	19	58	0	.	227	A	4175099	T	A	4175099	3	1	194	1	0	0	0	0	1	0	0	0	14342	1580	55	4	411	4	SIRT6	19	4175099	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	57609	4175099	54953884	1367	25523											
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4207906	4207906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD24	NM_133475	exon10	c.G773A	p.G258E	TGGCGGGGGACAA	.	82	38	88	0	.	68	A	4207906	G	A	4207906	3	1	194	1	0	0	0	0	1	0	0	0	653	1232	43	3	807	3	ANKRD24	19	4207906	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	32807	4207906	54921077	1368	25524											
CCDC94	55702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4249223	4249223	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC94	NM_018074	exon2	c.25-2A>G	.	CCCTGCAGAAATA	.	72	34	86	0	.	90	G	4249223	A	G	4249223	5	3	194	1	0	0	0	0	0	0	1	0	2873	202	7	2	29	2	CCDC94	19	4249223	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	41317	4249223	54879760	1369	25525											
STAP2	55620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4333984	4333984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAP2	NM_001013841	exon2	c.A160T	p.N54Y	CCCGATTGCTATT	.	67	36	65	0	.	90	A	4333984	T	A	4333984	3	1	194	1	0	0	0	0	1	0	0	0	15252	1812	63	4	1237	4	STAP2	19	4333984	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	84761	4333984	54794999	1370	25526											
ARRDC5	645432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4902726	4902726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001080523	exon1	c.C154A	p.P52T	CTATGGGGTCCAC	.	120	62	139	0	.	.	T	4902726	G	T	4902726	3	4	194	1	0	0	0	0	1	0	0	0	986	1232	43	3	886	3	ARRDC5	19	4902726	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	568742	4902726	54226257	1371	25527											
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	5456001	5456001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNRF4	NM_181710	exon1	c.A499T	p.T167S	GACTGCACCTTCG	.	13	9	14	0	.	135	T	5456001	A	T	5456001	3	4	194	1	0	0	0	0	1	0	0	0	18211	159	6	4	501	4	ZNRF4	19	5456001	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	553275	5456001	53672982	1372	25528											
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5918611	5918611	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RANBP3	NM_007322	exon15	c.A1369T	p.T457S	GCTTGGTGTTGAG	.	96	49	118	0	.	272	A	5918611	T	A	5918611	3	1	194	1	0	0	0	0	1	0	0	0	13029	1696	59	4	346	4	RANBP3	19	5918611	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	462610	5918611	53210372	1373	25529											
DENND1C	79958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6478804	6478804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND1C	NM_024898	exon6	c.C356T	p.A119V	TCCTGGGCTAGGA	.	119	51	179	0	.	67	A	6478804	G	A	6478804	3	1	194	1	0	0	0	0	1	0	0	0	4428	1203	42	3	2121	3	DENND1C	19	6478804	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	560193	6478804	52650179	1374	25530											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6710810	6710810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3	NM_000064	exon13	c.A1526G	p.E509G	CCGGGCTCTCGCA	.	100	44	85	0	.	95	C	6710810	T	C	6710810	3	2	194	1	0	0	0	0	1	0	0	0	2204	1551	54	2	3581	2	C3	19	6710810	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	232006	6710810	52418173	1375	25531											
INSR	3643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7117093	7117093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INSR	NM_000208	exon22	c.A4123T	p.T1375S	GCAAGGTCAGAAT	.	125	51	138	1	.	1381	A	7117093	T	A	7117093	3	1	194	1	0	0	0	0	1	0	0	0	7773	1667	58	4	29	4	INSR	19	7117093	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	406283	7117093	52011890	1376	25532											
ZNF358	140467	ucsc.edu;mdanderson.org	37	19	7585107	7585107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF358	NM_018083	exon2	c.G979A	p.A327T	GGCAAAGCCTTCG	.	20	7	11	0	.	90	A	7585107	G	A	7585107	3	1	194	1	0	0	0	0	1	0	0	0	17864	971	34	3	981	3	ZNF358	19	7585107	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	468014	7585107	51543876	1377	25533											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8175948	8175948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN3	NM_032447	exon32	c.T4204A	p.C1402S	CCTGGCAGGCCCG	.	50	17	63	0	.	100	T	8175948	A	T	8175948	3	4	194	1	0	0	0	0	1	0	0	0	5704	188	7	4	4353	4	FBN3	19	8175948	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	590841	8175948	50953035	1378	25534											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062263	9062263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A25183G	p.I8395V	TGGATATGGAAAC	.	54	30	52	0	.	566	C	9062263	T	C	9062263	3	2	194	1	0	0	0	0	1	0	0	0	9973	1464	51	2	18668	2	MUC16	19	9062263	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	886315	9062263	50066720	1379	25535											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9067175	9067175	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.T20271A	p.T6757T	GGATGTAGTTGGT	.	58	27	84	0	.	566	T	9067175	A	T	9067175	2	4	194	1	0	0	0	0	0	0	0	1	9973	407	15	4		4	MUC16	19	9067175	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4912	9067175	50061808	1380	25536											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9067507	9067507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A19939G	p.I6647V	TCTCAATCCTTGT	.	90	42	96	0	.	566	C	9067507	T	C	9067507	3	2	194	1	0	0	0	0	1	0	0	0	9973	1435	50	2	23912	2	MUC16	19	9067507	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	332	9067507	50061476	1381	25537											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9069194	9069194	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.C18252T	p.A6084A	CACCAGGGCGGTG	.	111	56	111	0	.	566	A	9069194	G	A	9069194	2	1	194	1	0	0	0	0	0	0	0	1	9973	1219	43	3		3	MUC16	19	9069194	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1687	9069194	50059789	1382	25538											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9071260	9071260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A16186T	p.S5396C	TGCTGCTCAAATT	.	96	42	100	0	.	566	A	9071260	T	A	9071260	3	1	194	1	0	0	0	0	1	0	0	0	9973	1551	54	4	27665	4	MUC16	19	9071260	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2066	9071260	50057723	1383	25539											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9077042	9077042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.C10404A	p.D3468E	GCCTTGGTCTCCA	.	47	27	55	0	.	566	T	9077042	G	T	9077042	3	4	194	1	0	0	0	0	1	0	0	0	9973	1252	44	3	33447	3	MUC16	19	9077042	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	5782	9077042	50051941	1384	25540											
OR7G1	125962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9226012	9226012	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR7G1	NM_001005192	exon1	c.T428A	p.L143X	ATCAGCAAGCCCC	.	89	32	92	0	.	70	T	9226012	A	T	9226012	4	4	194	1	0	0	0	0	0	1	0	0	11222	131	5	4	581	4	OR7G1	19	9226012	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	148970	9226012	49902971	1385	25541											
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10624587	10624587	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	S1PR5	NM_030760	exon2	c.G1101A	p.S367S	CTGGGGCGATGAG	.	36	18	33	0	.	523	T	10624587	C	T	10624587	2	4	194	1	0	0	0	0	0	0	0	1	13797	755	27	1		1	S1PR5	19	10624587	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1398575	10624587	48504396	1386	25542											
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10625481	10625481	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	S1PR5	NM_030760	exon2	c.T207C	p.A69A	CATGGGAGCGTGG	.	70	17	70	0	.	523	G	10625481	A	G	10625481	2	3	194	1	0	0	0	0	0	0	0	1	13797	291	11	2		2	S1PR5	19	10625481	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	894	10625481	48503502	1387	25543											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11101907	11101907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMARCA4	NM_003072	exon8	c.A1327C	p.K443Q	CGCAGCAAGCGCC	.	90	33	94	0	.	1523	C	11101907	A	C	11101907	3	2	194	1	0	0	0	0	1	0	0	0	14770	131	5	5	1353	5	SMARCA4	19	11101907	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	476426	11101907	48027076	1388	25544											
NFIX	4784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13136064	13136064	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFIX	NM_001271043	exon2	c.A281T	p.E94V	GGCCCGAGTTCCG	.	61	28	66	0	.	272	T	13136064	A	T	13136064	3	4	194	1	0	0	0	0	1	0	0	0	10374	304	11	4	263	4	NFIX	19	13136064	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2034157	13136064	45992919	1389	25545											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13411364	13411364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1A	NM_001127221	exon18	c.T2282A	p.V761E	ACTTACACAGCTA	.	74	23	87	0	.	67	T	13411364	A	T	13411364	3	4	194	1	0	0	0	0	1	0	0	0	2538	173	6	4	5463	4	CACNA1A	19	13411364	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	275300	13411364	45717619	1390	25546											
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14749129	14749129	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EMR3	NM_032571	exon11	c.T1272A	p.G424G	CAAAGCACCGGCG	.	55	30	78	0	.	528	T	14749129	A	T	14749129	2	4	194	1	0	0	0	0	0	0	0	1	5106	146	6	4		4	EMR3	19	14749129	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1337765	14749129	44379854	1391	25547											
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14755018	14755018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EMR3	NM_032571	exon9	c.A952T	p.R318W	CATCCCTGGACCA	.	66	30	75	0	.	528	A	14755018	T	A	14755018	3	1	194	1	0	0	0	0	1	0	0	0	5106	1579	55	4	1038	4	EMR3	19	14755018	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	5889	14755018	44373965	1392	25548											
ZNF333	84449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14828536	14828536	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF333	NM_032433	exon11	c.T891C	p.D297D	CATTGATGTGAAA	.	60	30	73	0	.	92	C	14828536	T	C	14828536	2	2	194	1	0	0	0	0	0	0	0	1	17847	1461	51	2		2	ZNF333	19	14828536	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	73518	14828536	44300447	1393	25549											
SLC1A6	6511	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15065125	15065125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC1A6	NM_005071	exon7	c.A1186G	p.I396V	AGGTGATGGGCAG	.	19	11	29	0	.	186	C	15065125	T	C	15065125	3	2	194	1	0	0	0	0	1	0	0	0	14436	1464	51	2	520	2	SLC1A6	19	15065125	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	236589	15065125	44063858	1394	25550											
SLC1A6	6511	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15065140	15065140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC1A6	NM_005071	exon7	c.T1171A	p.S391T	TTGCCGAGCTGGG	.	16	6	26	0	.	186	T	15065140	A	T	15065140	3	4	194	1	0	0	0	0	1	0	0	0	14436	318	11	4	535	4	SLC1A6	19	15065140	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	15	15065140	44063843	1395	25551											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15290991	15290991	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOTCH3	NM_000435	exon20	c.A3219C	p.P1073P	GCCCTCTGGGCAC	.	52	25	55	0	.	855	G	15290991	T	G	15290991	2	3	194	1	0	0	0	0	0	0	0	1	10550	1567	55	5		5	NOTCH3	19	15290991	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	225851	15290991	43837992	1396	25552											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15299987	15299987	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOTCH3	NM_000435	exon9	c.1193-2A>T	.	GGCGCCTGCCGGA	.	66	25	79	0	.	855	A	15299987	T	A	15299987	5	1	194	1	0	0	0	0	0	0	1	0	10550	1594	55	4	5878	4	NOTCH3	19	15299987	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	8996	15299987	43828996	1397	25553											
F2RL3	9002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17000522	17000522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	F2RL3	NM_003950	exon2	c.T248A	p.L83H	CCGCCCTCTATGG	.	25	13	20	0	.	226	A	17000522	T	A	17000522	3	1	194	1	0	0	0	0	1	0	0	0	5346	1551	54	4	254	4	F2RL3	19	17000522	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1700535	17000522	42128461	1398	25554											
B3GNT3	10331	broad.mit.edu;bcgsc.ca	37	19	17919063	17919063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GNT3	NM_014256	exon2	c.A447T	p.T149T	GGGCACAGCCTCC	.	72	31	88	1	.	91	T	17919063	A	T	17919063	2	4	194	1	0	0	0	0	0	0	0	1	1258	175	7	4		4	B3GNT3	19	17919063	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	918541	17919063	41209920	1399	25555											
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18171954	18171954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL12RB1	NM_005535	exon15	c.T1769C	p.I590T	AACTCAATGGCGG	.	268	122	307	0	.	91	G	18171954	A	G	18171954	3	3	194	1	0	0	0	0	1	0	0	0	7626	101	4	2	231	2	IL12RB1	19	18171954	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	252891	18171954	40957029	1400	25556											
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18377981	18377982	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.L123P	GGAAATCAGCTTC	.	74	33	77	0	.	.	AG	18377982	CA	AG	18377981	3	1	194	1	0	0	0	0	1	0	0	0	8251	813	29	3	3742	3	KIAA1683	19	18377981	Missense_Mutation	DNP	CA	TCGA-UB-A7MB-01A-11D-A33Q-10	206027	18377981	40751002	1401	25557											
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19243552	19243552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM161A	NM_001256766	exon4	c.G200A	p.G67D	CTAAGGCCATTGG	.	86	35	98	0	.	154	T	19243552	C	T	19243552	3	4	194	1	0	0	0	0	1	0	0	0	16073	739	26	3	1275	3	TMEM161A	19	19243552	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	865571	19243552	39885431	1402	25558											
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19651056	19651056	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CILP2	NM_153221	exon3	c.A207T	p.G69G	CCCCGGAGGCGAC	.	30	15	27	0	.	91	T	19651056	A	T	19651056	2	4	194	1	0	0	0	0	0	0	0	1	3430	291	11	4		4	CILP2	19	19651056	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	407504	19651056	39477927	1403	25559											
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19655120	19655120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CILP2	NM_153221	exon8	c.G1766T	p.G589V	CTTCTGGCGCTTT	.	56	33	71	0	.	91	T	19655120	G	T	19655120	3	4	194	1	0	0	0	0	1	0	0	0	3430	1203	42	3	1796	3	CILP2	19	19655120	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	4064	19655120	39473863	1404	25560											
PBX4	80714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19675781	19675781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PBX4	NM_025245	exon6	c.C886T	p.P296S	TCCCTGGGACCCC	.	94	47	107	0	.	154	A	19675781	G	A	19675781	3	1	194	1	0	0	0	0	1	0	0	0	11495	1232	43	3	250	3	PBX4	19	19675781	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	20661	19675781	39453202	1405	25561											
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19749243	19749243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GMIP	NM_016573	exon8	c.A586G	p.K196E	GCTCCTTGAACTC	.	92	33	113	0	.	91	C	19749243	T	C	19749243	3	2	194	1	0	0	0	0	1	0	0	0	6491	1821	63	2	2382	2	GMIP	19	19749243	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	73462	19749243	39379740	1406	25562											
ZNF93	81931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20026109	20026109	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF93	NM_031218	exon2	c.T24C	p.D8D	TAGAGATGTGGCC	.	40	22	35	0	.	91	C	20026109	T	C	20026109	2	2	194	1	0	0	0	0	0	0	0	1	18199	1461	51	2		2	ZNF93	19	20026109	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	276866	20026109	39102874	1407	25563											
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21239855	21239855	+	Silent	SNP	C	C	T	rs148853343		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ZNF430,abdomen,malignant_melanoma,0	ZNF430	NM_025189	exon5	c.C741T	p.T247T	CTCAACCCTTACT	.	182	81	221	0	.	516	T	21239855	C	T	21239855	2	4	194	1	0	0	0	0	0	0	0	1	17901	610	22	3		3	ZNF430	19	21239855	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1213746	21239855	37889128	1408	25564											
ZNF431	170959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21365902	21365902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF431	NM_133473	exon5	c.G796T	p.G266C	GAATGTGGCAAAG	.	78	39	67	0	.	514	T	21365902	G	T	21365902	3	4	194	1	0	0	0	0	1	0	0	0	17902	1348	47	3	814	3	ZNF431	19	21365902	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	126047	21365902	37763081	1409	25565											
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21719234	21719234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF429	NM_001001415	exon4	c.A379G	p.K127E	CTATACAAAGGAG	.	113	45	138	0	.	516	G	21719234	A	G	21719234	3	3	194	1	0	0	0	0	1	0	0	0	17899	131	5	2	393	2	ZNF429	19	21719234	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	353332	21719234	37409749	1410	25566											
ZNF208	7757	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	22155602	22155602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF208	NM_007153	exon4	c.G2234A	p.G745E	TTCTCTCCAGTAT	.	15	8	19	0	.	7	T	22155602	C	T	22155602	3	4	194	1	0	0	0	0	1	0	0	0	17763	855	30	3	1612	3	ZNF208	19	22155602	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	436368	22155602	36973381	1411	25567											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23926975	23926975	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_138286	exon4	c.T1377C	p.F459F	CTGGTTAAAGGCT	.	21	8	38	0	.	.	G	23926975	A	G	23926975	2	3	194	1	0	0	0	0	0	0	0	1	18085	359	13	2		2	ZNF681	19	23926975	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1771373	23926975	35202008	1412	25568											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30935770	30935770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF536	NM_014717	exon2	c.T1301G	p.L434R	CCTGCCTGCAGAG	.	62	21	69	0	.	144	G	30935770	T	G	30935770	3	3	194	1	0	0	0	0	1	0	0	0	17971	1580	55	5	1303	5	ZNF536	19	30935770	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	7008795	30935770	28193213	1413	25569											
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	32843894	32843894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF507	NM_001136156	exon3	c.A158G	p.K53R	TAAGCAAGATAGT	.	78	36	74	0	.	230	G	32843894	A	G	32843894	3	3	194	1	0	0	0	0	1	0	0	0	17950	72	3	2	160	2	ZNF507	19	32843894	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1908124	32843894	26285089	1414	25570											
RGS9BP	388531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	33167237	33167237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS9BP	NM_207391	exon1	c.T68A	p.L23Q	ACCACCTGGTGCT	.	50	22	34	0	.	90	A	33167237	T	A	33167237	3	1	194	1	0	0	0	0	1	0	0	0	13314	1580	55	4	70	4	RGS9BP	19	33167237	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	323343	33167237	25961746	1415	25571											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36221017	36221017	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLL4	NM_014727	exon23	c.G5067C	p.L1689L	TCTCCTGGATGGC	.	113	55	157	0	.	697	C	36221017	G	C	36221017	2	2	194	1	0	0	0	0	0	0	0	1	9623	1335	47	4		4	MLL4	19	36221017	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	3053780	36221017	22907966	1416	25572											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36276186	36276186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP33	NM_052948	exon18	c.A1817T	p.K606M	CTCGAAAGAAGCC	.	92	43	98	0	.	229	T	36276186	A	T	36276186	3	4	194	1	0	0	0	0	1	0	0	0	882	72	3	4	1887	4	ARHGAP33	19	36276186	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	55169	36276186	22852797	1417	25573											
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37644045	37644045	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF585A	NM_199126	exon6	c.A591C	p.T197T	CTTTTGTGTGAAT	.	72	37	71	0	.	92	G	37644045	T	G	37644045	2	3	194	1	0	0	0	0	0	0	0	1	18014	1683	59	5		5	ZNF585A	19	37644045	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1367859	37644045	21484938	1418	25574											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39076640	39076640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR1	NM_000540	exon103	c.G14866T	p.E4956X	GATATGGAGGTAG	.	56	25	69	0	.	100	T	39076640	G	T	39076640	4	4	194	1	0	0	0	0	0	1	0	0	13768	1175	41	3	15276	3	RYR1	19	39076640	Nonsense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	1432595	39076640	20052343	1419	25575											
FBXO27	126433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39517611	39517611	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBXO27	NM_178820	exon5	c.A607T	p.R203X	GGAGTCTGTACAT	.	85	26	88	0	.	227	A	39517611	T	A	39517611	4	1	194	1	0	0	0	0	0	1	0	0	5737	1588	55	4	252	4	FBXO27	19	39517611	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	440971	39517611	19611372	1420	25576											
TTC9B	148014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40724111	40724111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC9B	NM_152479	exon1	c.A178T	p.S60C	GGCTGCTGTCGAG	.	30	17	22	0	.	90	A	40724111	T	A	40724111	3	1	194	1	0	0	0	0	1	0	0	0	16713	1580	55	4	553	4	TTC9B	19	40724111	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1206500	40724111	18404872	1421	25577											
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40903671	40903671	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRX	NM_181882	exon7	c.A588T	p.R196R	CACTTCTCGTACA	.	19	10	23	0	.	92	A	40903671	T	A	40903671	2	1	194	1	0	0	0	0	0	0	0	1	12642	1538	54	4		4	PRX	19	40903671	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	179560	40903671	18225312	1422	25578											
CEACAM6	4680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	42265920	42265920	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEACAM6	NM_002483	exon4	c.C747G	p.Y249X	CAATTACCGTCCA	.	110	44	130	0	.	91	G	42265920	C	G	42265920	4	3	194	1	0	0	0	0	0	1	0	0	3196	518	18	4	761	4	CEACAM6	19	42265920	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1362249	42265920	16863063	1423	25579											
LYPD4	147719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42342129	42342129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LYPD4	NM_173506	exon4	c.T418G	p.C140G	AGCTACAGGACGC	.	97	45	117	0	.	91	C	42342129	A	C	42342129	3	2	194	1	0	0	0	0	1	0	0	0	9112	188	7	5	330	5	LYPD4	19	42342129	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	76209	42342129	16786854	1424	25580											
ATP1A3	478	broad.mit.edu;mdanderson.org	37	19	42471493	42471493	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A3	NM_001256213	exon23	c.2955-1G>T	.	CTGGGCCTGCAGA	.	21	8	21	0	.	92	A	42471493	C	A	42471493	5	1	194	1	0	0	0	0	0	0	1	0	1130	695	24	3	128	3	ATP1A3	19	42471493	Splice_Site	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	129364	42471493	16657490	1425	25581											
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42621499	42621499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POU2F2	NM_002698	exon5	c.G206T	p.S69I	TCGCCACTGGGGT	.	34	21	26	0	.	227	A	42621499	C	A	42621499	3	1	194	1	0	0	0	0	1	0	0	0	12272	565	20	3	1225	3	POU2F2	19	42621499	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	150006	42621499	16507484	1426	25582											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42793207	42793207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CIC	NM_015125	exon7	c.G1099C	p.E367Q	GGCGGAGAAGTAG	.	31	18	34	0	.	591	C	42793207	G	C	42793207	3	2	194	1	0	0	0	0	1	0	0	0	3424	943	33	4	1125	4	CIC	19	42793207	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	171708	42793207	16335776	1427	25583											
CXCL17	284340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42937971	42937971	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CXCL17	NM_198477	exon2	c.T117C	p.S39S	TCTCCTAGAAGCC	.	31	18	46	0	.	68	G	42937971	A	G	42937971	2	3	194	1	0	0	0	0	0	0	0	1	4084	407	15	2		2	CXCL17	19	42937971	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	144764	42937971	16191012	1428	25584											
PSG3	5671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43233999	43233999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSG3	NM_021016	exon4	c.C919A	p.P307T	GATAGGGTCCTGT	.	23	9	32	0	.	92	T	43233999	G	T	43233999	3	4	194	1	0	0	0	0	1	0	0	0	12656	1261	44	3	379	3	PSG3	19	43233999	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	296028	43233999	15894984	1429	25585											
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43412004	43412004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSG6	NM_001031850	exon4	c.A709G	p.K237E	GCAGCTTCGCTGT	.	40	24	39	0	.	92	C	43412004	T	C	43412004	3	2	194	1	0	0	0	0	1	0	0	0	12659	1792	62	2	649	2	PSG6	19	43412004	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	178005	43412004	15716979	1430	25586											
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969695	43969695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LYPD3	NM_014400	exon1	c.A29T	p.Q10L	ATGGCCTGGGCAC	.	27	8	25	0	.	91	A	43969695	T	A	43969695	3	1	194	1	0	0	0	0	1	0	0	0	9111	1580	55	4	1031	4	LYPD3	19	43969695	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	557691	43969695	15159288	1431	25587											
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44470227	44470227	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF221	NM_013359	exon6	c.A573T	p.S191S	ACAATCACACTCA	.	55	23	86	0	.	91	T	44470227	A	T	44470227	2	4	194	1	0	0	0	0	0	0	0	1	17772	146	6	4		4	ZNF221	19	44470227	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	500532	44470227	14658756	1432	25588											
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44515114	44515114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF230	NM_006300	exon5	c.A923G	p.Y308C	AACTGTACAAATC	.	55	24	86	0	.	90	G	44515114	A	G	44515114	3	3	194	1	0	0	0	0	1	0	0	0	17781	391	14	2	937	2	ZNF230	19	44515114	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	44887	44515114	14613869	1433	25589											
ZNF224	7767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44610721	44610721	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF224	NM_013398	exon6	c.A408T	p.A136A	TGAGGCAGGACTA	.	77	38	71	0	.	92	T	44610721	A	T	44610721	2	4	194	1	0	0	0	0	0	0	0	1	17775	175	7	4		4	ZNF224	19	44610721	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	95607	44610721	14518262	1434	25590											
ZFP112	7771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44832441	44832441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP112	NM_001083335	exon5	c.A1887T	p.R629S	GTGGACTCTCTGA	.	113	49	146	0	.	95	A	44832441	T	A	44832441	3	1	194	1	0	0	0	0	1	0	0	0	17635	1548	54	4	858	4	ZFP112	19	44832441	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	221720	44832441	14296542	1435	25591											
ZFP112	7771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44833042	44833042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP112	NM_001083335	exon5	c.A1286C	p.N429T	TCAAGATTTGAAC	.	82	26	76	0	.	95	G	44833042	T	G	44833042	3	3	194	1	0	0	0	0	1	0	0	0	17635	1493	52	5	1459	5	ZFP112	19	44833042	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	601	44833042	14295941	1436	25592											
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46318016	46318016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RSPH6A	NM_030785	exon1	c.A419T	p.E140V	GGGGGCTCCTGGA	.	52	23	74	0	.	91	A	46318016	T	A	46318016	3	1	194	1	0	0	0	0	1	0	0	0	13707	1551	54	4	1758	4	RSPH6A	19	46318016	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1484974	46318016	12810967	1437	25593											
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	47425269	47425269	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_004491	exon1	c.C3337T	p.Q1113X	AGCACCCAAGGCA	.	101	43	154	0	.	.	T	47425269	C	T	47425269	4	4	194	1	0	0	0	0	0	1	0	0	6795	595	21	3	3339	3	ARHGAP35	19	47425269	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1107253	47425269	11703714	1438	25594											
KPTN	11133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47986778	47986778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KPTN	NM_007059	exon2	c.T290A	p.V97E	ATCCCCACAACCA	.	80	27	110	0	.	91	T	47986778	A	T	47986778	3	4	194	1	0	0	0	0	1	0	0	0	8437	159	6	4	1064	4	KPTN	19	47986778	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	561509	47986778	11142205	1439	25595											
GLTSCR1	29998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48197947	48197947	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLTSCR1	NM_015711	exon8	c.G2859T	p.L953L	AGCGCTGCCCCAG	.	39	18	34	0	.	48	T	48197947	G	T	48197947	2	4	194	1	0	0	0	0	0	0	0	1	6474	1306	46	3		3	GLTSCR1	19	48197947	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	211169	48197947	10931036	1440	25596											
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48519284	48519284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELSPBP1	NM_022142	exon4	c.T343G	p.C115G	AAATTCTGTGAAA	.	57	19	82	0	.	90	G	48519284	T	G	48519284	3	3	194	1	0	0	0	0	1	0	0	0	5083	1580	55	5	353	5	ELSPBP1	19	48519284	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	321337	48519284	10609699	1441	25597											
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48551611	48551611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLA2G4C	NM_001159322	exon17	c.T1645G	p.C549G	CCAAGCAGCAACT	.	40	24	44	0	.	92	C	48551611	A	C	48551611	3	2	194	1	0	0	0	0	1	0	0	0	12003	188	7	5	14	5	PLA2G4C	19	48551611	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	32327	48551611	10577372	1442	25598											
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49261303	49261303	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FGF21	NM_019113	exon3	c.A456T	p.P152P	GTCCCCACACCGG	.	164	59	188	0	.	522	T	49261303	A	T	49261303	2	4	194	1	0	0	0	0	0	0	0	1	5850	146	6	4		4	FGF21	19	49261303	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	709692	49261303	9867680	1443	25599											
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49473817	49473817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GYS1	NM_002103	exon14	c.A1795G	p.K599E	GGTATTTCCAGTC	.	51	27	59	0	.	524	C	49473817	T	C	49473817	3	2	194	1	0	0	0	0	1	0	0	0	6912	1792	62	2	430	2	GYS1	19	49473817	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	212514	49473817	9655166	1444	25600											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49703938	49703938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPM4	NM_017636	exon19	c.G2849T	p.G950V	CGGAGGGGCTCCT	.	41	17	45	0	.	91	T	49703938	G	T	49703938	3	4	194	1	0	0	0	0	1	0	0	0	16585	1232	43	3	2923	3	TRPM4	19	49703938	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	230121	49703938	9425045	1445	25601											
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50154181	50154181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCAF1	NM_021228	exon7	c.A535C	p.T179P	TTGGGCACGGGAG	.	65	20	76	0	.	68	C	50154181	A	C	50154181	3	2	194	1	0	0	0	0	1	0	0	0	13868	159	6	5	557	5	SCAF1	19	50154181	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	450243	50154181	8974802	1446	25602											
SIGLEC11	114132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50453266	50453266	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC11	NM_052884	exon11	c.T2058A	p.L686L	CAATTGAAGCCCA	.	71	27	99	0	.	94	T	50453266	A	T	50453266	2	4	194	1	0	0	0	0	0	0	0	1	14307	233	9	4		4	SIGLEC11	19	50453266	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	299085	50453266	8675717	1447	25603											
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50861904	50861904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAPSA	NM_004851	exon9	c.T1169G	p.M390R	CTCTTCATGTCCC	.	68	30	108	0	.	90	C	50861904	A	C	50861904	3	2	194	1	0	0	0	0	1	0	0	0	10166	217	8	5	97	5	NAPSA	19	50861904	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	408638	50861904	8267079	1448	25604											
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51189492	51189492	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHANK1	NM_016148	exon21	c.2577+2T>C	.	CCGCCTACCTCAG	.	19	9	45	0	.	153	G	51189492	A	G	51189492	5	3	194	1	0	0	0	0	0	0	1	0	14264	405	14	2	3922	2	SHANK1	19	51189492	Splice_Site	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	327588	51189492	7939491	1449	25605											
IGLON5	402665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51828607	51828607	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001101372	exon4	c.C399A	p.A133A	CCCTGCCCGCATT	.	46	21	61	0	.	.	A	51828607	C	A	51828607	2	1	194	1	0	0	0	0	0	0	0	1	7595	610	22	3		3	IGLON5	19	51828607	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	639115	51828607	7300376	1450	25606											
LIM2	3982	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51885739	51885739	+	Missense_Mutation	SNP	G	G	T	rs201810597	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LIM2	NM_030657	exon3	c.C384A	p.F128L	ATGAGCGAAGGCC	.	37	16	63	0	G|0.999;A|0.000	90	T	51885739	G	T	51885739	3	4	194	1	0	0	0	0	1	0	0	0	8795	1049	37	1	275	1	LIM2	19	51885739	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	57132	51885739	7243244	1451	25607											
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51958812	51958812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC8	NM_014442	exon4	c.C911T	p.P304L	CGTGAGGGGCACA	.	46	26	73	0	.	94	A	51958812	G	A	51958812	3	1	194	1	0	0	0	0	1	0	0	0	14314	1232	43	3	604	3	SIGLEC8	19	51958812	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	73073	51958812	7170171	1452	25608											
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003208	52003208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC12	NM_053003	exon2	c.C774A	p.N258K	TATGTAGTTCCAT	.	60	29	85	0	.	96	T	52003208	G	T	52003208	3	4	194	1	0	0	0	0	1	0	0	0	14308	1020	36	3	1041	3	SIGLEC12	19	52003208	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	44396	52003208	7125775	1453	25609											
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52004872	52004872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC12	NM_053003	exon1	c.G116T	p.C39F	GAGACACACAGGC	.	50	22	88	0	.	96	A	52004872	C	A	52004872	3	1	194	1	0	0	0	0	1	0	0	0	14308	478	17	3	1776	3	SIGLEC12	19	52004872	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1664	52004872	7124111	1454	25610											
SIGLEC6	946	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	52023460	52023460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC6	NM_198846	exon6	c.A1062T	p.X354C	CCAGCCTCAGCAG	.	49	17	73	0	.	91	A	52023460	T	A	52023460	3	1	194	1	0	0	0	0	1	0	0	0	14312	1564	54	4	127	4	SIGLEC6	19	52023460	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	18588	52023460	7105523	1455	25611											
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52249744	52249744	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FPR1	NM_001193306	exon3	c.T504A	p.P168P	TTTACCAGGTACT	.	48	24	54	0	.	524	T	52249744	A	T	52249744	2	4	194	1	0	0	0	0	0	0	0	1	6038	175	7	4		4	FPR1	19	52249744	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	226284	52249744	6879239	1456	25612											
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53644359	53644359	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF347	NM_001172675	exon5	c.T1725C	p.C575C	CTTGCCACACTCA	.	37	17	66	0	.	90	G	53644359	A	G	53644359	2	3	194	1	0	0	0	0	0	0	0	1	17858	157	6	2		2	ZNF347	19	53644359	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1394615	53644359	5484624	1457	25613											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53741010	53741010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF677	NM_182609	exon5	c.T970G	p.C324G	TGCCACATATATT	.	72	40	99	0	.	91	C	53741010	A	C	53741010	3	2	194	1	0	0	0	0	1	0	0	0	18081	217	8	5	788	5	ZNF677	19	53741010	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	96651	53741010	5387973	1458	25614											
BIRC8	112401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53793261	53793261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC8	NM_033341	exon1	c.T367A	p.F123I	AATCAAATCCCAT	.	93	39	118	0	.	227	T	53793261	A	T	53793261	3	4	194	1	0	0	0	0	1	0	0	0	1440	101	4	4	347	4	BIRC8	19	53793261	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	52251	53793261	5335722	1459	25615											
DPRX	503834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54139945	54139945	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPRX	NM_001012728	exon3	c.T279A	p.G93G	AGAGGGTGGGGTC	.	65	25	98	0	.	90	A	54139945	T	A	54139945	2	1	194	1	0	0	0	0	0	0	0	1	4738	1683	59	4		4	DPRX	19	54139945	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	346684	54139945	4989038	1460	25616											
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	54401219	54401219	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRKCG	NM_002739	exon10	c.C946A	p.R316R	CGGGTGCGGATGG	.	38	22	57	0	.	1367	A	54401219	C	A	54401219	2	1	194	1	0	0	0	0	0	0	0	1	12512	759	27	1		1	PRKCG	19	54401219	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	261274	54401219	4727764	1461	25617											
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54444786	54444786	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNG7	NM_031896	exon4	c.A487C	p.R163R	ATGAACAGGCCCA	.	55	30	67	0	.	91	C	54444786	A	C	54444786	2	2	194	1	0	0	0	0	0	0	0	1	2562	179	7	5		5	CACNG7	19	54444786	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	43567	54444786	4684197	1462	25618											
TTYH1	57348	bcgsc.ca;mdanderson.org	37	19	54930431	54930431	+	Missense_Mutation	SNP	G	G	T	rs3745433	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTYH1	NM_020659	exon2	c.G256T	p.G86W	TCGCCCGGGGGAG	.	14	4	23	0	T|0.000;C|0.999	90	T	54930431	G	T	54930431	3	4	194	1	0	0	0	0	1	0	0	0	16736	1116	39	1	262	1	TTYH1	19	54930431	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	485645	54930431	4198552	1463	25619											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55497556	55497556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon8	c.C2239A	p.L747I	CGGAACCTCTGCC	.	91	38	97	0	.	120	A	55497556	C	A	55497556	3	1	194	1	0	0	0	0	1	0	0	0	10477	681	24	3	2265	3	NLRP2	19	55497556	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	567125	55497556	3631427	1464	25620											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55505725	55505725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon11	c.G2797T	p.G933W	GATCTGGGGCTGA	.	95	52	107	0	.	120	T	55505725	G	T	55505725	3	4	194	1	0	0	0	0	1	0	0	0	10477	1232	43	3	2835	3	NLRP2	19	55505725	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	8169	55505725	3623258	1465	25621											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55505788	55505788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon11	c.T2860C	p.C954R	CCACTGTGCAACT	.	87	44	84	0	.	120	C	55505788	T	C	55505788	3	2	194	1	0	0	0	0	1	0	0	0	10477	1696	59	2	2898	2	NLRP2	19	55505788	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	63	55505788	3623195	1466	25622											
GP6	51206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55538983	55538983	+	Missense_Mutation	SNP	C	C	A	rs41301959	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GP6	NM_016363	exon4	c.G573T	p.W191C	GGCTGACCACAGG	.	56	34	78	0	.	92	A	55538983	C	A	55538983	3	1	194	1	0	0	0	0	1	0	0	0	6584	508	18	3	1309	3	GP6	19	55538983	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	33195	55538983	3590000	1467	25623											
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55556516	55556516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RDH13	NM_001145971	exon7	c.A922G	p.R308G	AAAGCCTCCGGGC	.	80	21	119	0	.	92	C	55556516	T	C	55556516	3	2	194	1	0	0	0	0	1	0	0	0	13192	1550	54	2	77	2	RDH13	19	55556516	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	17533	55556516	3572467	1468	25624											
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55689571	55689571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT5	NM_003180	exon3	c.T245C	p.I82T	TTGTCTATGTAAC	.	21	13	37	0	.	90	G	55689571	A	G	55689571	3	3	194	1	0	0	0	0	1	0	0	0	15474	449	16	2	943	2	SYT5	19	55689571	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	133055	55689571	3439412	1469	25625											
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56467397	56467397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP8	NM_176811	exon3	c.T1973A	p.V658E	ATGAGGTGGAACT	.	35	33	97	1	.	361	A	56467397	T	A	56467397	3	1	194	1	0	0	0	0	1	0	0	0	10483	1696	59	4	1983	4	NLRP8	19	56467397	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	777826	56467397	2661586	1470	25626											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57036782	57036782	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF471	NM_020813	exon5	c.A1346C	p.H449P	CTCAGCATCAAAG	.	38	31	91	0	.	154	C	57036782	A	C	57036782	3	2	194	1	0	0	0	0	1	0	0	0	17927	217	8	5	1360	5	ZNF471	19	57036782	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	569385	57036782	2092201	1471	25627											
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57132817	57132817	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF71	NM_021216	exon3	c.A162T	p.A54A	AGGTGCAGAGTGG	.	42	37	125	0	.	91	T	57132817	A	T	57132817	2	4	194	1	0	0	0	0	0	0	0	1	18111	175	7	4		4	ZNF71	19	57132817	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	96035	57132817	1996166	1472	25628											
ZNF460	10794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57803168	57803168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF460	NM_006635	exon3	c.A1259G	p.Y420C	AGCCCTATGAGTG	.	54	51	91	0	.	90	G	57803168	A	G	57803168	3	3	194	1	0	0	0	0	1	0	0	0	17921	449	16	2	1269	2	ZNF460	19	57803168	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	670351	57803168	1325815	1473	25629											
ZNF549	256051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58048776	58048776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF549	NM_001199295	exon4	c.T404G	p.V135G	CGTCTGTGGCCAG	.	93	68	159	0	.	91	G	58048776	T	G	58048776	3	3	194	1	0	0	0	0	1	0	0	0	17978	1696	59	5	375	5	ZNF549	19	58048776	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	245608	58048776	1080207	1474	25630											
ZSCAN18	65982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58598367	58598367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZSCAN18	NM_001145542	exon5	c.G819C	p.K273N	AAAGGACTTCAGC	.	17	16	27	0	.	90	G	58598367	C	G	58598367	3	3	194	1	0	0	0	0	1	0	0	0	18227	564	20	4	893	4	ZSCAN18	19	58598367	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	549591	58598367	530616	1475	25631											
ZSCAN18	65982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58601546	58601546	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZSCAN18	NM_001145542	exon2	c.A257T	p.Q86L	TCCTGCTGGACTC	.	81	62	215	1	.	90	A	58601546	T	A	58601546	3	1	194	1	0	0	0	0	1	0	0	0	18227	1580	55	4	1467	4	ZSCAN18	19	58601546	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3179	58601546	527437	1476	25632											
SRXN1	140809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	633625	633625	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRXN1	NM_080725	exon1	c.A205T	p.I69F	CCCGGATCGTGTC	.	32	10	21	0	.	91	A	633625	T	A	633625	3	1	194	1	0	0	0	0	1	0	0	0	15172	1435	50	4	216	4	SRXN1	20	633625	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		633625	62391895	1477	25633											
SIRPB1	10326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1551660	1551660	+	Missense_Mutation	SNP	A	A	T	rs201191774	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIRPB1	NM_006065	exon4	c.T875A	p.V292E	CGGGACACATTTC	.	145	40	96	0	A|1.000;G|0.000	91	T	1551660	A	T	1551660	3	4	194	1	0	0	0	0	1	0	0	0	14333	159	6	4	329	4	SIRPB1	20	1551660	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	918035	1551660	61473860	1478	25634											
C20orf141	128653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2796253	2796253	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C20orf141	NM_080739	exon2	c.T330A	p.G110G	TGAAGGTCCTGGA	.	77	30	87	0	.	90	A	2796253	T	A	2796253	2	1	194	1	0	0	0	0	0	0	0	1	2089	1654	58	4		4	C20orf141	20	2796253	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1244593	2796253	60229267	1479	25635											
DDRGK1	65992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3180750	3180750	+	Splice_Site	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDRGK1	NM_023935	exon5	c.409-2A>C	.	TCTGCCTGGAGAG	.	71	29	62	0	.	90	G	3180750	T	G	3180750	5	3	194	1	0	0	0	0	0	0	1	0	4338	1594	55	5	561	5	DDRGK1	20	3180750	Splice_Site	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	384497	3180750	59844770	1480	25636											
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4168039	4168039	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMOX	NM_001270691	exon8	c.C1743T	p.F581F	CCTCTTCCAGCAG	.	72	33	107	0	.	153	T	4168039	C	T	4168039	2	4	194	1	0	0	0	0	0	0	0	1	14803	854	30	3		3	SMOX	20	4168039	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	987289	4168039	58857481	1481	25637											
ADRA1D	146	broad.mit.edu;mdanderson.org	37	20	4202598	4202598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRA1D	NM_000678	exon2	c.T1291G	p.W431G	CACGCCAGAGAGG	.	19	6	13	0	.	522	C	4202598	A	C	4202598	3	2	194	1	0	0	0	0	1	0	0	0	336	188	7	5	431	5	ADRA1D	20	4202598	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	34559	4202598	58822922	1482	25638											
ADRA1D	146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4228555	4228555	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRA1D	NM_000678	exon1	c.G1050T	p.L350L	GATGGCCAGAGTC	.	165	70	218	1	.	522	A	4228555	C	A	4228555	2	1	194	1	0	0	0	0	0	0	0	1	336	581	21	3		3	ADRA1D	20	4228555	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	25957	4228555	58796965	1483	25639											
SLC23A2	9962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4913132	4913132	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC23A2	NM_203327	exon3	c.A77T	p.E26V	TTTGCCTCGTCTT	.	83	30	81	0	.	92	A	4913132	T	A	4913132	3	1	194	1	0	0	0	0	1	0	0	0	14463	1551	54	4	1935	4	SLC23A2	20	4913132	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	684577	4913132	58112388	1484	25640											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9449299	9449299	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCB4	NM_001172646	exon35	c.G3330A	p.K1110K	TATCAAGAATAAA	.	37	11	35	0	.	274	A	9449299	G	A	9449299	2	1	194	1	0	0	0	0	0	0	0	1	12030	933	33	3		3	PLCB4	20	9449299	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	4536167	9449299	53576221	1485	25641											
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9538336	9538336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon7	c.A1662T	p.R554S	GAGAGCTCTCAGA	.	57	30	60	1	.	1434	A	9538336	T	A	9538336	3	1	194	1	0	0	0	0	1	0	0	0	11405	1548	54	4	513	4	PAK7	20	9538336	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	89037	9538336	53487184	1486	25642											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9546811	9546811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon5	c.T1211A	p.L404H	AGGCTGAGGGAGC	.	46	21	67	0	.	1434	T	9546811	A	T	9546811	3	4	194	1	0	0	0	0	1	0	0	0	11405	304	11	4	972	4	PAK7	20	9546811	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8475	9546811	53478709	1487	25643											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9561478	9561478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon4	c.A304G	p.K102E	TTTCTTTCCTTAG	.	65	22	72	0	.	1434	C	9561478	T	C	9561478	3	2	194	1	0	0	0	0	1	0	0	0	11405	1792	62	2	1883	2	PAK7	20	9561478	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	14667	9561478	53464042	1488	25644											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9624845	9624845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon3	c.A132T	p.A44A	CGTATCTGCTAAC	.	87	35	107	0	.	1434	A	9624845	T	A	9624845	2	1	194	1	0	0	0	0	0	0	0	1	11405	1567	55	4		4	PAK7	20	9624845	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	63367	9624845	53400675	1489	25645											
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	16485049	16485049	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF16B	NM_001199865	exon10	c.A1144T	p.R382X	TCAGTCTGGCTAT	.	114	51	143	0	.	291	A	16485049	T	A	16485049	4	1	194	1	0	0	0	0	0	1	0	0	8278	1588	55	4	2877	4	KIF16B	20	16485049	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6860204	16485049	46540471	1490	25646											
XRN2	22803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21369946	21369946	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRN2	NM_012255	exon30	c.A2823T	p.P941P	TTTGCCACCACCC	.	84	40	90	1	.	515	T	21369946	A	T	21369946	2	4	194	1	0	0	0	0	0	0	0	1	17457	146	6	4		4	XRN2	20	21369946	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	4884897	21369946	41655574	1491	25647											
NKX2-2	4821	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	21492594	21492594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NKX2-2	NM_002509	exon2	c.C789A	p.H263Q	CAGGGGGTGTGCT	.	19	9	21	0	.	92	T	21492594	G	T	21492594	3	4	194	1	0	0	0	0	1	0	0	0	10450	1252	44	3	36	3	NKX2-2	20	21492594	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	122648	21492594	41532926	1492	25648											
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23586297	23586297	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CST9	NM_001008693	exon1	c.A205C	p.R69R	ACAGCCTGTAGGC	.	121	56	107	0	.	91	G	23586297	T	G	23586297	2	3	194	1	0	0	0	0	0	0	0	1	3979	1579	55	5		5	CST9	20	23586297	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2093703	23586297	39439223	1493	25649											
HM13	81502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30102430	30102430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HM13	NM_178581	exon1	c.C76T	p.P26S	CGGCCGCCTTCCA	.	79	29	68	0	.	153	T	30102430	C	T	30102430	3	4	194	1	0	0	0	0	1	0	0	0	7217	739	26	3	78	3	HM13	20	30102430	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	6516133	30102430	32923090	1494	25650											
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	30432970	30432970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXS1	NM_004118	exon1	c.C376T	p.P126S	TGGCGGGGCCCCG	.	27	13	27	0	.	69	A	30432970	G	A	30432970	3	1	194	1	0	0	0	0	1	0	0	0	6035	1232	43	3	620	3	FOXS1	20	30432970	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	330540	30432970	32592550	1495	25651											
XKR7	343702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30585087	30585087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XKR7	NM_001011718	exon3	c.A1567T	p.I523F	CCTGTCATCCGGA	.	29	16	29	0	.	137	T	30585087	A	T	30585087	3	4	194	1	0	0	0	0	1	0	0	0	17433	217	8	4	1577	4	XKR7	20	30585087	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	152117	30585087	32440433	1496	25652											
NECAB3	63941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32247787	32247787	+	Missense_Mutation	SNP	C	C	T	rs200489455		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NECAB3	NM_031232	exon7	c.G547A	p.A183T	TCTGCGCCTCCAC	.	31	11	26	0	C|0.997;T|0.003	91	T	32247787	C	T	32247787	3	4	194	1	0	0	0	0	1	0	0	0	10306	739	26	3	667	3	NECAB3	20	32247787	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1662700	32247787	30777733	1497	25653											
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33714169	33714169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDEM2	NM_018217	exon8	c.A854G	p.K285R	ATGGCTTTGTTAT	.	68	26	99	0	.	90	C	33714169	T	C	33714169	3	2	194	1	0	0	0	0	1	0	0	0	4912	1841	64	2	898	2	EDEM2	20	33714169	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1466382	33714169	29311351	1498	25654											
MMP24	10893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33839777	33839777	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_006690	exon3	c.C465A	p.R155R	CAAGCGCTATGCC	.	67	33	87	0	.	.	A	33839777	C	A	33839777	2	1	194	1	0	0	0	0	0	0	0	1	9661	784	28	3		3	MMP24	20	33839777	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	125608	33839777	29185743	1499	25655											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34065725	34065725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP250	NM_007186	exon17	c.C1893G	p.S631R	GTGCAGCAGAATG	.	97	48	118	0	.	27	G	34065725	C	G	34065725	3	3	194	1	0	0	0	0	1	0	0	0	3252	709	25	4	1947	4	CEP250	20	34065725	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	225948	34065725	28959795	1500	25656											
BPI	671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36956045	36956045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BPI	NM_001725	exon11	c.T1229A	p.L410H	GAGAGCTCAAGCT	.	67	40	64	1	.	94	A	36956045	T	A	36956045	3	1	194	1	0	0	0	0	1	0	0	0	1490	1551	54	4	1271	4	BPI	20	36956045	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2890320	36956045	26069475	1501	25657											
LPIN3	64900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39978721	39978721	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPIN3	NM_022896	exon7	c.C786G	p.S262S	CGAGTCCTCAGTG	.	81	29	82	0	.	93	G	39978721	C	G	39978721	2	3	194	1	0	0	0	0	0	0	0	1	8920	668	24	4		4	LPIN3	20	39978721	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3022676	39978721	23046799	1502	25658											
R3HDML	140902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	42973928	42973928	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	R3HDML	NM_178491	exon4	c.T539A	p.L180Q	ATCGGCTGGGCTG	.	103	39	101	1	.	90	A	42973928	T	A	42973928	3	1	194	1	0	0	0	0	1	0	0	0	12889	1580	55	4	553	4	R3HDML	20	42973928	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2995207	42973928	20051592	1503	25659											
STK4	6789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43607128	43607128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STK4	NM_006282	exon3	c.A161T	p.Q54L	CCGGCCAGATTGT	.	60	24	72	0	.	767	T	43607128	A	T	43607128	3	4	194	1	0	0	0	0	1	0	0	0	15305	188	7	4	171	4	STK4	20	43607128	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	633200	43607128	19418392	1504	25660											
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43851485	43851485	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMG2	NM_003008	exon2	c.T1212C	p.N404N	GGAAAATAAAATA	.	105	45	109	0	.	91	C	43851485	T	C	43851485	2	2	194	1	0	0	0	0	0	0	0	1	14045	1403	49	2		2	SEMG2	20	43851485	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	244357	43851485	19174035	1505	25661											
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44684872	44684872	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A5	NM_001134771	exon22	c.A2940G	p.E980E	CCCAGAAGAGACG	.	88	33	99	0	.	156	G	44684872	A	G	44684872	2	3	194	1	0	0	0	0	0	0	0	1	14386	69	3	2		2	SLC12A5	20	44684872	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	833387	44684872	18340648	1506	25662											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47675054	47675054	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSE1L	NM_001256135	exon2	c.A54G	p.T18T	GAAAACACTTGAT	.	52	29	68	0	.	290	G	47675054	A	G	47675054	2	3	194	1	0	0	0	0	0	0	0	1	3930	146	6	2		2	CSE1L	20	47675054	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2990182	47675054	15350466	1507	25663											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47879931	47879931	+	Missense_Mutation	SNP	C	C	A	rs139038003	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNFX1	NM_021035	exon6	c.G2241T	p.Q747H	CAGGTACTGTTCC	.	64	25	89	0	C|1.000;A|0.000	24	A	47879931	C	A	47879931	3	1	194	1	0	0	0	0	1	0	0	0	18202	564	20	3	3551	3	ZNFX1	20	47879931	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	204877	47879931	15145589	1508	25664											
SALL4	57167	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50408636	50408636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SALL4	NM_020436	exon2	c.G386T	p.S129I	TCCTTACTGCCGG	.	47	13	64	1	.	92	A	50408636	C	A	50408636	3	1	194	1	0	0	0	0	1	0	0	0	13813	565	20	3	2787	3	SALL4	20	50408636	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	2528705	50408636	12616884	1509	25665											
ZFP64	55734	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50701565	50701565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP64	NM_199427	exon9	c.A1469C	p.Q490P	TCGGCCTGGTGCA	.	29	12	40	0	.	155	G	50701565	T	G	50701565	3	3	194	1	0	0	0	0	1	0	0	0	17649	1580	55	5	472	5	ZFP64	20	50701565	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	292929	50701565	12323955	1510	25666											
BMP7	655	broad.mit.edu;mdanderson.org	37	20	55841042	55841042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BMP7	NM_001719	exon1	c.T137C	p.L46P	CTGCGGAGGCGCC	.	30	10	30	0	.	187	G	55841042	A	G	55841042	3	3	194	1	0	0	0	0	1	0	0	0	1465	304	11	2	1186	2	BMP7	20	55841042	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5139477	55841042	7184478	1511	25667											
STX16	8675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57246218	57246218	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STX16	NM_001001433	exon7	c.A657G	p.T219T	TTTTACAGAGGAC	.	72	27	87	0	.	91	G	57246218	A	G	57246218	2	3	194	1	0	0	0	0	0	0	0	1	15338	175	7	2		2	STX16	20	57246218	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1405176	57246218	5779302	1512	25668											
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58349384	58349384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHACTR3	NM_080672	exon7	c.A1013T	p.E338V	GCAAGGAGAGGGA	.	99	36	85	0	.	93	T	58349384	A	T	58349384	3	4	194	1	0	0	0	0	1	0	0	0	11811	304	11	4	1039	4	PHACTR3	20	58349384	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1103166	58349384	4676136	1513	25669											
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58563998	58563998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH26	NM_177980	exon9	c.A1063G	p.I355V	CTCATCATTGTCG	.	70	29	64	0	.	93	G	58563998	A	G	58563998	3	3	194	1	0	0	0	0	1	0	0	0	3110	217	8	2	1097	2	CDH26	20	58563998	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	214614	58563998	4461522	1514	25670											
BIRC7	79444	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61867542	61867542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC7	NM_139317	exon1	c.C94A	p.P32T	TGTGGACCCCGCT	.	48	44	73	1	.	659	A	61867542	C	A	61867542	3	1	194	1	0	0	0	0	1	0	0	0	1439	507	18	3	96	3	BIRC7	20	61867542	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3303544	61867542	1157978	1515	25671											
TPTE	7179	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10908836	10908836	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPTE	NM_199261	exon23	c.T1509A	p.I503I	ATTTTCAATAAAA	.	78	10	123	0	.	344	T	10908836	A	T	10908836	2	4	194	1	0	0	0	0	0	0	0	1	16427	126	5	4		4	TPTE	21	10908836	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10		10908836	37221059	1516	25672											
TPTE	7179	broad.mit.edu;bcgsc.ca	37	21	10951410	10951410	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPTE	NM_199261	exon10	c.T302A	p.L101Q	AAGACCAGGAAAA	.	661	147	714	2	.	344	T	10951410	A	T	10951410	3	4	194	1	0	0	0	0	1	0	0	0	16427	188	7	4	1413	4	TPTE	21	10951410	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	42574	10951410	37178485	1517	25673											
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17196476	17196476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP25	NM_013396	exon11	c.A1199G	p.Y400C	TTTTATATTTGGA	.	28	15	28	0	.	663	G	17196476	A	G	17196476	3	3	194	1	0	0	0	0	1	0	0	0	17053	449	16	2	1241	2	USP25	21	17196476	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6245066	17196476	30933419	1518	25674											
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19732132	19732132	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS15	NM_002772	exon8	c.A822G	p.T274T	ATAATATGTATTA	.	188	86	188	0	.	160	C	19732132	T	C	19732132	2	2	194	1	0	0	0	0	0	0	0	1	16243	1451	51	2		2	TMPRSS15	21	19732132	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2535656	19732132	28397763	1519	25675											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	22782650	22782650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCAM2	NM_004540	exon10	c.A1252G	p.I418V	AATCCTATCAATA	.	322	144	353	0	.	94	G	22782650	A	G	22782650	3	3	194	1	0	0	0	0	1	0	0	0	10203	449	16	2	1290	2	NCAM2	21	22782650	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3050518	22782650	25347245	1520	25676											
JAM2	58494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	27062262	27062262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	JAM2	NM_021219	exon3	c.T218A	p.V73D	CCTTTGTCTACTA	.	25	19	35	0	.	90	A	27062262	T	A	27062262	3	1	194	1	0	0	0	0	1	0	0	0	7943	1667	58	4	228	4	JAM2	21	27062262	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4279612	27062262	21067633	1521	25677											
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	27277345	27277345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APP	NM_000484	exon15	c.A1954G	p.T652A	GTCGAGTGGTCAG	.	98	34	104	0	.	91	C	27277345	T	C	27277345	3	2	194	1	0	0	0	0	1	0	0	0	815	1696	59	2	374	2	APP	21	27277345	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	215083	27277345	20852550	1522	25678											
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28306845	28306845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS5	NM_007038	exon4	c.A1629T	p.G543G	CCCCTTTCCACAA	.	83	38	114	0	.	229	A	28306845	T	A	28306845	2	1	194	1	0	0	0	0	0	0	0	1	269	1770	62	4		4	ADAMTS5	21	28306845	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1029500	28306845	19823050	1523	25679											
KRTAP11-1	337880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32253723	32253723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP11-1	NM_175858	exon1	c.T121G	p.C41G	GCAAACAGATGCC	.	109	45	113	0	.	91	C	32253723	A	C	32253723	3	2	194	1	0	0	0	0	1	0	0	0	8517	188	7	5	374	5	KRTAP11-1	21	32253723	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3946878	32253723	15876172	1524	25680											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37408515	37408515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SETD4	NM_017438	exon11	c.T1223C	p.I408T	TGGTTTATCAGGG	.	86	35	100	0	.	154	G	37408515	A	G	37408515	3	3	194	1	0	0	0	0	1	0	0	0	14133	449	16	2	103	2	SETD4	21	37408515	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	5154792	37408515	10721380	1525	25681											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37572789	37572789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOPEY2	NM_005128	exon4	c.A481T	p.I161F	TCCGAGATCTCCG	.	31	14	27	0	.	91	T	37572789	A	T	37572789	3	4	194	1	0	0	0	0	1	0	0	0	4708	333	12	4	491	4	DOPEY2	21	37572789	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	164274	37572789	10557106	1526	25682											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37605269	37605269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOPEY2	NM_005128	exon15	c.A2518G	p.S840G	TATAAGAGCTCTG	.	158	74	191	0	.	91	G	37605269	A	G	37605269	3	3	194	1	0	0	0	0	1	0	0	0	4708	304	11	2	2572	2	DOPEY2	21	37605269	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	32480	37605269	10524626	1527	25683											
TTC3	7267	broad.mit.edu;bcgsc.ca	37	21	38555158	38555158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC3	NM_001001894	exon36	c.A4700T	p.Q1567L	AAATCCAAGAAAG	.	343	15	423	2	.	590	T	38555158	A	T	38555158	3	4	194	1	0	0	0	0	1	0	0	0	16694	130	5	4	4838	4	TTC3	21	38555158	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	949889	38555158	9574737	1528	25684											
HMGN1	3150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40720227	40720227	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMGN1	NM_004965	exon4	c.A117T	p.A39A	CGCTGCTGCCTTT	.	80	33	102	0	.	658	A	40720227	T	A	40720227	2	1	194	1	0	0	0	0	0	0	0	1	7234	1567	55	4		4	HMGN1	21	40720227	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2165069	40720227	7409668	1529	25685											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43281737	43281737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM15	NM_022115	exon7	c.A826C	p.M276L	TGTGCATGCTGGC	.	59	21	75	0	.	90	G	43281737	T	G	43281737	3	3	194	1	0	0	0	0	1	0	0	0	12456	1464	51	5	3797	5	PRDM15	21	43281737	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2561510	43281737	4848158	1530	25686											
KRTAP10-4	386672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45994365	45994365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP10-4	NM_198687	exon1	c.T730C	p.S244P	GTGTGCTCTGAGG	.	34	14	33	0	.	90	C	45994365	T	C	45994365	3	2	194	1	0	0	0	0	1	0	0	0	8511	1551	54	2	732	2	KRTAP10-4	21	45994365	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2712628	45994365	2135530	1531	25687											
KRTAP12-2	353323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46086475	46086475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_181684	exon1	c.G329T	p.C110F	GGCCTGCAGCTCA	.	68	23	88	0	.	.	A	46086475	C	A	46086475	3	1	194	1	0	0	0	0	1	0	0	0	8519	710	25	3	115	3	KRTAP12-2	21	46086475	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	92110	46086475	2043420	1532	25688											
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47552138	47552138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A2	NM_001849	exon28	c.T2732A	p.L911Q	AATACCTGAACTC	.	23	21	41	0	.	515	A	47552138	T	A	47552138	3	1	194	1	0	0	0	0	1	0	0	0	3700	1580	55	4	3168	4	COL6A2	21	47552138	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	1465663	47552138	577757	1533	25689											
MCM3AP	8888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47686993	47686993	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM3AP	NM_003906	exon10	c.A2692T	p.I898F	GAAAGATGGTAGA	.	44	36	101	1	.	291	A	47686993	T	A	47686993	3	1	194	1	0	0	0	0	1	0	0	0	9388	1464	51	4	3326	4	MCM3AP	21	47686993	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	134855	47686993	442902	1534	25690											
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47735441	47735441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C21orf58	NM_058180	exon4	c.G391A	p.D131N	GGGCATCGTCCGG	.	35	28	77	0	.	91	T	47735441	C	T	47735441	3	4	194	1	0	0	0	0	1	0	0	0	2129	884	31	1	597	1	C21orf58	21	47735441	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	48448	47735441	394454	1535	25691											
GNB1L	54584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19808139	19808139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GNB1L	NM_053004	exon4	c.A236T	p.Q79L	CGCCCCTGGGGCA	.	82	32	107	0	.	290	A	19808139	T	A	19808139	3	1	194	1	0	0	0	0	1	0	0	0	6516	1580	55	4	767	4	GNB1L	22	19808139	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		19808139	31496427	1536	25692											
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21380894	21380894	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_005446	exon12	c.C1314A	p.S438S	CCATTCCGGGAGC	.	72	26	96	0	.	.	A	21380894	C	A	21380894	2	1	194	1	0	0	0	0	0	0	0	1	11344	639	23	1		1	P2RX6	22	21380894	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1572755	21380894	29923672	1537	25693											
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892325	22892325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRAME	NM_206954	exon5	c.T776C	p.M259T	TTAATCATCTGGC	.	80	32	75	0	.	515	G	22892325	A	G	22892325	3	3	194	1	0	0	0	0	1	0	0	0	12424	217	8	2	761	2	PRAME	22	22892325	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1511431	22892325	28412241	1538	25694											
IGLL1	3543	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	23922353	23922353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGLL1	NM_020070	exon1	c.G25T	p.G9C	CAAGGCCCCCCTG	.	21	10	16	0	.	90	A	23922353	C	A	23922353	3	1	194	1	0	0	0	0	1	0	0	0	7593	623	22	3	628	3	IGLL1	22	23922353	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	1030028	23922353	27382213	1539	25695											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24584255	24584255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUSD2	NM_019601	exon14	c.G2404A	p.A802T	GCGGTTGCGCTCG	.	31	18	36	0	.	91	A	24584255	G	A	24584255	3	1	194	1	0	0	0	0	1	0	0	0	15405	1319	46	3	2458	3	SUSD2	22	24584255	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	661902	24584255	26720311	1540	25696											
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24629889	24629889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GGT5	NM_001099782	exon2	c.T257A	p.M86K	AGGCCCATGCTCT	.	111	54	101	0	.	71	T	24629889	A	T	24629889	3	4	194	1	0	0	0	0	1	0	0	0	6362	217	8	4	1550	4	GGT5	22	24629889	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	45634	24629889	26674677	1541	25697											
TMEM211	255349	broad.mit.edu;bcgsc.ca	37	22	25331454	25331454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon3	c.T236A	p.L79Q	CAACCCAGCCGGC	.	129	7	184	0	.	68	T	25331454	A	T	25331454	3	4	194	1	0	0	0	0	1	0	0	0	16132	188	7	4	157	4	TMEM211	22	25331454	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	701565	25331454	25973112	1542	25698											
TMEM211	255349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25334135	25334135	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon2	c.A108T	p.P36P	CACCCCTGGCATT	.	29	9	32	0	.	68	A	25334135	T	A	25334135	2	1	194	1	0	0	0	0	0	0	0	1	16132	1567	55	4		4	TMEM211	22	25334135	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2681	25334135	25970431	1543	25699											
TMEM211	255349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25334227	25334227	+	Missense_Mutation	SNP	A	A	T	rs112354981	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon2	c.T16A	p.W6R	GGAGCCAGCCTCC	.	33	16	26	0	A|0.500;G|0.500	68	T	25334227	A	T	25334227	3	4	194	1	0	0	0	0	1	0	0	0	16132	188	7	4	381	4	TMEM211	22	25334227	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	92	25334227	25970339	1544	25700											
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26176138	26176138	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO18B	NM_032608	exon9	c.A2184C	p.T728T	CGCTACAGGCCGC	.	28	10	27	0	.	142	C	26176138	A	C	26176138	2	2	194	1	0	0	0	0	0	0	0	1	10066	175	7	5		5	MYO18B	22	26176138	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	841911	26176138	25128428	1545	25701											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423048	26423048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO18B	NM_032608	exon43	c.A7108T	p.T2370S	CCGACCACACCCA	.	56	25	56	0	.	142	T	26423048	A	T	26423048	3	4	194	1	0	0	0	0	1	0	0	0	10066	159	6	4	7274	4	MYO18B	22	26423048	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	246910	26423048	24881518	1546	25702											
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26688929	26688929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEZ6L	NM_021115	exon2	c.A652T	p.R218W	CCCCAGAGGCCAG	.	84	38	156	0	.	95	T	26688929	A	T	26688929	3	4	194	1	0	0	0	0	1	0	0	0	14143	295	11	4	658	4	SEZ6L	22	26688929	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	265881	26688929	24615637	1547	25703											
HPS4	89781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26849269	26849269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HPS4	NM_022081	exon14	c.A2057C	p.Q686P	CCATCCTGAGGGT	.	41	20	67	0	.	90	G	26849269	T	G	26849269	3	3	194	1	0	0	0	0	1	0	0	0	7341	1580	55	5	73	5	HPS4	22	26849269	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	160340	26849269	24455297	1548	25704											
CRYBB1	1414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26995533	26995533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRYBB1	NM_001887	exon6	c.A680T	p.Q227L	AGGGACTGCATCT	.	97	40	112	0	.	91	A	26995533	T	A	26995533	3	1	194	1	0	0	0	0	1	0	0	0	3910	1580	55	4	82	4	CRYBB1	22	26995533	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	146264	26995533	24309033	1549	25705											
CRYBA4	1413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	27026355	27026355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRYBA4	NM_001886	exon6	c.A495T	p.E165D	GCTGGAATGCGAT	.	45	15	53	0	.	90	T	27026355	A	T	27026355	3	4	194	1	0	0	0	0	1	0	0	0	3909	98	4	4	513	4	CRYBA4	22	27026355	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	30822	27026355	24278211	1550	25706											
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29130640	29130640	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHEK2	NM_145862	exon2	c.A70T	p.S24C	TAACGCTGCCATG	.	94	33	110	0	.	1515	A	29130640	T	A	29130640	3	1	194	1	0	0	0	0	1	0	0	0	3335	1580	55	4	1750	4	CHEK2	22	29130640	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2104285	29130640	22173926	1551	25707											
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31333654	31333654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MORC2	NM_014941	exon16	c.T1228C	p.S410P	TGGCAGAGAGGTA	.	44	19	38	0	.	92	G	31333654	A	G	31333654	3	3	194	1	0	0	0	0	1	0	0	0	9702	304	11	2	1732	2	MORC2	22	31333654	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	2203014	31333654	19970912	1552	25708											
SYN3	8224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32914296	32914296	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYN3	NM_003490	exon12	c.T1344C	p.P448P	GGGCTGAGGAGAC	.	25	12	22	0	.	92	G	32914296	A	G	32914296	2	3	194	1	0	0	0	0	0	0	0	1	15439	291	11	2		2	SYN3	22	32914296	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1580642	32914296	18390270	1553	25709											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	36684453	36684453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH9	NM_002473	exon34	c.G4777T	p.E1593X	CCATCTCCCGCAC	.	26	11	25	0	.	292	A	36684453	C	A	36684453	4	1	194	1	0	0	0	0	0	1	0	0	10042	864	30	3	1137	3	MYH9	22	36684453	Nonsense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3770157	36684453	14620113	1554	25710											
EIF3D	8664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36920644	36920644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EIF3D	NM_003753	exon4	c.A305T	p.Q102L	CCTACCTGGGCAA	.	56	28	75	0	.	69	A	36920644	T	A	36920644	3	1	194	1	0	0	0	0	1	0	0	0	5014	1594	55	4	1389	4	EIF3D	22	36920644	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	236191	36920644	14383922	1555	25711											
ELFN2	114794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37769351	37769351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELFN2	NM_052906	exon3	c.A2224T	p.T742S	AGTAGGTGGAGTC	.	44	18	51	0	.	70	A	37769351	T	A	37769351	3	1	194	1	0	0	0	0	1	0	0	0	5058	1696	59	4	242	4	ELFN2	22	37769351	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	848707	37769351	13535215	1556	25712											
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38318312	38318312	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MICALL1	NM_033386	exon6	c.C903A	p.P301P	CCGCCCCACCCCT	.	23	12	20	0	.	153	A	38318312	C	A	38318312	2	1	194	1	0	0	0	0	0	0	0	1	9573	581	21	3		3	MICALL1	22	38318312	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	548961	38318312	12986254	1557	25713											
SUN2	25777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39137564	39137564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUN2	NM_001199579	exon10	c.G1144A	p.A382T	TCAGGGCAGACAG	.	19	7	32	0	.	154	T	39137564	C	T	39137564	3	4	194	1	0	0	0	0	1	0	0	0	15389	710	25	3	1108	3	SUN2	22	39137564	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	819252	39137564	12167002	1558	25714											
APOBEC3D	140564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39421150	39421150	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOBEC3D	NM_152426	exon3	c.A286C	p.R96R	GCTAACAGGCGCT	.	77	28	97	0	.	180	C	39421150	A	C	39421150	2	2	194	1	0	0	0	0	0	0	0	1	792	179	7	5		5	APOBEC3D	22	39421150	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	283586	39421150	11883416	1559	25715											
TTLL1	25809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43459928	43459928	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL1	NM_012263	exon8	c.639-1G>T	.	TTGTACCTAGGAG	.	80	35	100	0	.	92	A	43459928	C	A	43459928	5	1	194	1	0	0	0	0	0	0	1	0	16719	695	24	3	653	3	TTLL1	22	43459928	Splice_Site	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	4038778	43459928	7844638	1560	25716											
TTLL12	23170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43570530	43570530	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL12	NM_015140	exon7	c.A1009T	p.N337Y	AGAAGTTGAAGAG	.	24	12	34	0	.	90	A	43570530	T	A	43570530	3	1	194	1	0	0	0	0	1	0	0	0	16722	1812	63	4	957	4	TTLL12	22	43570530	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	110602	43570530	7734036	1561	25717											
PRR5-ARHGAP8	553158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45218295	45218295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRR5-ARHGAP8	NM_181334	exon9	c.A797T	p.E266V	TGAGTGAGCTCCA	.	66	26	118	0	.	161	T	45218295	A	T	45218295	3	4	194	1	0	0	0	0	1	0	0	0	12601	304	11	4	831	4	PRR5-ARHGAP8	22	45218295	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1647765	45218295	6086271	1562	25718											
PHF21B	112885	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	45312213	45312213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHF21B	NM_138415	exon4	c.G511T	p.V171L	TGACCACAGACAC	.	13	5	15	0	.	93	A	45312213	C	A	45312213	3	1	194	1	0	0	0	0	1	0	0	0	11834	478	17	3	1124	3	PHF21B	22	45312213	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	93918	45312213	5992353	1563	25719											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46657787	46657787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKDREJ	NM_006071	exon1	c.T1433C	p.L478S	AGGAACAAAGAAA	.	54	26	73	0	.	156	G	46657787	A	G	46657787	3	3	194	1	0	0	0	0	1	0	0	0	11970	131	5	2	5332	2	PKDREJ	22	46657787	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1345574	46657787	4646779	1564	25720											
TBC1D22A	25771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	47189485	47189485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBC1D22A	NM_014346	exon3	c.C207A	p.S69R	TACCAGCGATGCC	.	66	37	82	0	.	91	A	47189485	C	A	47189485	3	1	194	1	0	0	0	0	1	0	0	0	15608	767	27	1	217	1	TBC1D22A	22	47189485	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	531698	47189485	4115081	1565	25721											
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50599429	50599429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOV10L1	NM_018995	exon26	c.A3499G	p.T1167A	AGTATTACAAACG	.	115	41	147	0	.	93	G	50599429	A	G	50599429	3	3	194	1	0	0	0	0	1	0	0	0	9719	391	14	2	3654	2	MOV10L1	22	50599429	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3409944	50599429	705137	1566	25722											
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5810965	5810965	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLGN4X	NM_181332	exon6	c.A2344T	p.I782F	TTGGAATCATGGT	.	68	59	118	0	.	195	A	5810965	T	A	5810965	3	1	194	1	0	0	0	0	1	0	0	0	10464	1435	50	4	110	4	NLGN4X	23	5810965	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10		5810965	149459595	1567	25723											
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8767070	8767070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM9A	NM_174951	exon3	c.A157T	p.R53W	CCTTCCTGCTGCG	.	72	62	106	0	.	130	A	8767070	T	A	8767070	3	1	194	1	0	0	0	0	1	0	0	0	5659	1579	55	4	869	4	FAM9A	23	8767070	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2956105	8767070	146503490	1568	25724											
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12905637	12905637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR7	NM_016562	exon3	c.T2010G	p.F670L	AGTTTTTGATGGT	.	46	32	61	0	.	564	G	12905637	T	G	12905637	3	3	194	1	0	0	0	0	1	0	0	0	15953	1809	63	5	2016	5	TLR7	23	12905637	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4138567	12905637	142364923	1569	25725											
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12938413	12938413	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR8	NM_138636	exon2	c.C1254A	p.S418S	TTTCTCCAATCTG	.	40	38	55	0	.	629	A	12938413	C	A	12938413	2	1	194	1	0	0	0	0	0	0	0	1	15954	581	21	3		3	TLR8	23	12938413	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	32776	12938413	142332147	1570	25726											
TLR8	51311	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12939723	12939723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR8	NM_138636	exon2	c.A2564T	p.D855V	ACTGGGATGTTTG	.	42	39	57	1	.	629	T	12939723	A	T	12939723	3	4	194	1	0	0	0	0	1	0	0	0	15954	333	12	4	2570	4	TLR8	23	12939723	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1310	12939723	142330837	1571	25727											
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23019627	23019627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX53	NM_182699	exon1	c.A1453G	p.S485G	TTGTCAAGCGACT	.	80	74	115	0	.	228	G	23019627	A	G	23019627	3	3	194	1	0	0	0	0	1	0	0	0	4371	72	3	2	1455	2	DDX53	23	23019627	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	10079904	23019627	132250933	1572	25728											
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37027900	37027900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM47C	NM_001013736	exon1	c.C1417T	p.H473Y	GTGTCCCATCTCT	.	50	46	54	0	.	111	T	37027900	C	T	37027900	3	4	194	1	0	0	0	0	1	0	0	0	5571	594	21	3	1419	3	FAM47C	23	37027900	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	14008273	37027900	118242660	1573	25729											
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47074244	47074244	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBA1	NM_153280	exon26	c.G3093A	p.V1031V	CCACGTGCGGGCG	.	25	24	34	0	.	227	A	47074244	G	A	47074244	2	1	194	1	0	0	0	0	0	0	0	1	16824	1306	46	3		3	UBA1	23	47074244	Silent	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	10046344	47074244	108196316	1574	25730											
SUV39H1	6839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	48558575	48558575	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUV39H1	NM_003173	exon3	c.A259T	p.K87X	ATCCTCAAGCAGT	.	115	104	135	1	.	226	T	48558575	A	T	48558575	4	4	194	1	0	0	0	0	0	1	0	0	15409	131	5	4	269	4	SUV39H1	23	48558575	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1484331	48558575	106711985	1575	25731											
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106453	53106453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR173	NM_018969	exon2	c.T650C	p.M217T	GCAAGATGAAGCC	.	30	27	20	0	.	130	C	53106453	T	C	53106453	3	2	194	1	0	0	0	0	1	0	0	0	6671	1464	51	2	652	2	GPR173	23	53106453	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4547878	53106453	102164107	1576	25732											
TRO	7216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54955840	54955840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRO	NM_001039705	exon12	c.A2683T	p.T895S	CTCAGCACCAGTG	.	43	43	55	0	.	131	T	54955840	A	T	54955840	3	4	194	1	0	0	0	0	1	0	0	0	16571	159	6	4	2725	4	TRO	23	54955840	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1849387	54955840	100314720	1577	25733											
MTMR8	55613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63490847	63490847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTMR8	NM_017677	exon13	c.G1588C	p.D530H	GCACATCTGTCTC	.	91	86	120	0	.	195	G	63490847	C	G	63490847	3	3	194	1	0	0	0	0	1	0	0	0	9949	913	32	4	534	4	MTMR8	23	63490847	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	8535007	63490847	91779713	1578	25734											
AR	367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	66937427	66937427	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AR	NM_000044	exon5	c.A2281C	p.R761R	AACTCCAGGATGC	.	58	52	58	0	.	661	C	66937427	A	C	66937427	2	2	194	1	0	0	0	0	0	0	0	1	836	179	7	5		5	AR	23	66937427	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3446580	66937427	88333133	1579	25735											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73812565	73812565	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RLIM	NM_183353	exon5	c.A585T	p.S195S	TTCAGTTGAATTT	.	43	33	47	0	.	228	A	73812565	T	A	73812565	2	1	194	1	0	0	0	0	0	0	0	1	13390	1799	63	4		4	RLIM	23	73812565	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	6875138	73812565	81457995	1580	25736											
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	76938245	76938245	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATRX	NM_000489	exon9	c.A2503T	p.R835X	TGGTTCTGGCAGC	.	53	52	54	0	.	248	A	76938245	T	A	76938245	4	1	194	1	0	0	0	0	0	1	0	0	1208	1588	55	4	5083	4	ATRX	23	76938245	Nonsense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3125680	76938245	78332315	1581	25737											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79979304	79979304	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRWD3	NM_153252	exon16	c.A1593G	p.T531T	AGAATCTGTGCAG	.	47	45	52	0	.	134	C	79979304	T	C	79979304	2	2	194	1	0	0	0	0	0	0	0	1	1526	1567	55	2		2	BRWD3	23	79979304	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	3041059	79979304	75291256	1582	25738											
BRWD3	254065	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	79999579	79999579	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRWD3	NM_153252	exon8	c.A765G	p.A255A	AACGGGTGCACAA	.	220	16	260	1	.	134	C	79999579	T	C	79999579	2	2	194	1	0	0	0	0	0	0	0	1	1526	1683	59	2		2	BRWD3	23	79999579	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	20275	79999579	75270981	1583	25739											
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83390124	83390124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPS6KA6	NM_014496	exon7	c.T596G	p.L199R	GGCTTCAGGTCTC	.	260	233	301	0	.	615	C	83390124	A	C	83390124	3	2	194	1	0	0	0	0	1	0	0	0	13655	188	7	5	1705	5	RPS6KA6	23	83390124	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3390545	83390124	71880436	1584	25740											
DACH2	117154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85769362	85769362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DACH2	NM_053281	exon3	c.G608T	p.G203V	TCCCAGGCCTCTT	.	197	176	224	0	.	136	T	85769362	G	T	85769362	3	4	194	1	0	0	0	0	1	0	0	0	4221	1203	42	3	618	3	DACH2	23	85769362	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	2379238	85769362	69501198	1585	25741											
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91873834	91873834	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH11X	NM_032968	exon7	c.C3939T	p.P1313P	TCATCCCAGTGAT	.	162	151	172	0	.	193	T	91873834	C	T	91873834	2	4	194	1	0	0	0	0	0	0	0	1	11508	581	21	3		3	PCDH11X	23	91873834	Silent	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	6104472	91873834	63396726	1586	25742											
ARMCX1	51309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100808409	100808409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMCX1	NM_016608	exon4	c.A496G	p.S166G	AGGGCAAGTGGAA	.	76	60	95	1	.	134	G	100808409	A	G	100808409	3	3	194	1	0	0	0	0	1	0	0	0	959	72	3	2	498	2	ARMCX1	23	100808409	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	8934575	100808409	54462151	1587	25743											
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	100880234	100880234	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMCX3	NM_016607	exon5	c.A265T	p.R89X	GGAACCAGAGCTA	.	30	29	37	0	.	131	T	100880234	A	T	100880234	4	4	194	1	0	0	0	0	0	1	0	0	961	180	7	4	267	4	ARMCX3	23	100880234	Nonsense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	71825	100880234	54390326	1588	25744											
NRK	203447	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105153328	105153328	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NRK	NM_198465	exon13	c.T1695G	p.A565A	ACAGGCTGCCGAG	.	89	79	110	1	.	630	G	105153328	T	G	105153328	2	3	194	1	0	0	0	0	0	0	0	1	10655	1567	55	5		5	NRK	23	105153328	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	4273094	105153328	50117232	1589	25745											
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107821343	107821343	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL4A5	NM_000495	exon12	c.T681A	p.G227G	CAAAGGTGAAAAA	.	159	145	192	0	.	133	A	107821343	T	A	107821343	2	1	194	1	0	0	0	0	0	0	0	1	3694	1683	59	4		4	COL4A5	23	107821343	Silent	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2668015	107821343	47449217	1590	25746											
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110391047	110391047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK3	NM_001128168	exon5	c.T467C	p.L156P	CTGTTCTAGATGT	.	250	223	244	0	.	1043	C	110391047	T	C	110391047	3	2	194	1	0	0	0	0	1	0	0	0	11402	1522	53	2	485	2	PAK3	23	110391047	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	2569704	110391047	44879513	1591	25747											
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	111698806	111698806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZCCHC16	NM_001004308	exon3	c.A850G	p.S284G	TACTGCAGCCAAT	.	151	131	178	2	.	91	G	111698806	A	G	111698806	3	3	194	1	0	0	0	0	1	0	0	0	17581	188	7	2	852	2	ZCCHC16	23	111698806	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1307759	111698806	43571754	1592	25748											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117722105	117722105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK11	NM_144658	exon17	c.A1801G	p.I601V	GATTGTATTACTT	.	47	45	54	0	.	93	G	117722105	A	G	117722105	3	3	194	1	0	0	0	0	1	0	0	0	4686	449	16	2	1867	2	DOCK11	23	117722105	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6023299	117722105	37548455	1593	25749											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117722147	117722147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK11	NM_144658	exon17	c.T1843G	p.C615G	AAGAATTGCCAAA	.	46	41	57	0	.	93	G	117722147	T	G	117722147	3	3	194	1	0	0	0	0	1	0	0	0	4686	1812	63	5	1909	5	DOCK11	23	117722147	Missense_Mutation	SNP	T	TCGA-UB-A7MB-01A-11D-A33Q-10	42	117722147	37548413	1594	25750											
IL13RA1	3597	ucsc.edu;bcgsc.ca	37	X	117910394	117910394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL13RA1	NM_001560	exon10	c.A1111G	p.K371E	AGGCTCAAGATTA	.	30	5	42	0	.	554	G	117910394	A	G	117910394	3	3	194	1	0	0	0	0	1	0	0	0	7629	131	5	2	1149	2	IL13RA1	23	117910394	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	188247	117910394	37360166	1595	25751											
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130419759	130419759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGSF1	NM_001555	exon4	c.C361A	p.L121I	ACTCTAGAACTTT	.	40	38	35	0	.	133	T	130419759	G	T	130419759	3	4	194	1	0	0	0	0	1	0	0	0	7596	933	33	3	3794	3	IGSF1	23	130419759	Missense_Mutation	SNP	G	TCGA-UB-A7MB-01A-11D-A33Q-10	12509365	130419759	24850801	1596	25752											
PLAC1	10761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133700330	133700330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLAC1	NM_021796	exon3	c.G383T	p.C128F	ATGGAGCAGGGCT	.	76	70	70	0	.	131	A	133700330	C	A	133700330	3	1	194	1	0	0	0	0	1	0	0	0	12012	710	25	3	259	3	PLAC1	23	133700330	Missense_Mutation	SNP	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3280571	133700330	21570230	1597	25753											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134993960	134993960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAGE1	NM_018666	exon18	c.A2369C	p.N790T	CCAAAAACTACAG	.	75	68	84	0	.	133	C	134993960	A	C	134993960	3	2	194	1	0	0	0	0	1	0	0	0	13809	43	2	5	2435	5	SAGE1	23	134993960	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1293630	134993960	20276600	1598	25754											
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291576	141291576	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAGEC2	NM_016249	exon3	c.T198A	p.P66P	CTCCTCAGGACCA	.	37	34	44	0	.	193	T	141291576	A	T	141291576	2	4	194	1	0	0	0	0	0	0	0	1	9181	175	7	4		4	MAGEC2	23	141291576	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	6297616	141291576	13978984	1599	25755											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144904336	144904336	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLITRK2	NM_001144005	exon5	c.A393T	p.L131L	CTTCCTAGGCCTG	.	58	52	102	0	.	136	T	144904336	A	T	144904336	2	4	194	1	0	0	0	0	0	0	0	1	14743	407	15	4		4	SLITRK2	23	144904336	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3612760	144904336	10366224	1600	25756											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147967466	147967466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AFF2	NM_002025	exon8	c.A1310T	p.E437V	ACCTTGAGCCTGT	.	48	43	55	0	.	135	T	147967466	A	T	147967466	3	4	194	1	0	0	0	0	1	0	0	0	357	304	11	4	1395	4	AFF2	23	147967466	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	3063130	147967466	7303094	1601	25757											
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149867740	149867740	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTMR1	NM_003828	exon2	c.A219G	p.S73S	AGGTTCAGTGACA	.	32	30	45	0	.	131	G	149867740	A	G	149867740	2	3	194	1	0	0	0	0	0	0	0	1	9938	175	7	2		2	MTMR1	23	149867740	Silent	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	1900274	149867740	5402820	1602	25758											
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153073936	153073936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDZD4	NM_032512	exon2	c.175delG	p.D59fs	AGCTGTCCCCCCG	.	46	40	100	0	.	193	-	153073936	C	-	153073936	7	5	194	1	0	1	0	1	0	0	0	0	11703	855	30	0	2162	0	PDZD4	23	153073936	Frame_Shift_Del	DEL	C	TCGA-UB-A7MB-01A-11D-A33Q-10	3206196	153073936	2196624	1603	25759											
DKC1	1736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153996705	153996705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DKC1	NM_001363	exon8	c.A769G	p.K257E	AGTGAAAAGGTAT	.	30	27	40	0	.	227	G	153996705	A	G	153996705	3	3	194	1	0	0	0	0	1	0	0	0	4542	15	1	2	799	2	DKC1	23	153996705	Missense_Mutation	SNP	A	TCGA-UB-A7MB-01A-11D-A33Q-10	922769	153996705	1273855	1604	25760											
PRAMEF4	400735	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	12942131	12942131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PRAMEF4	NM_001009611	exon3	c.G419C	p.C140S	CTTGGACAGTCCT	.	13	9	22	0	.	45	G	12942131	C	G	12942131	3	3	195	1	0	0	0	0	1	0	0	0	12437	478	17	4	1025	4	PRAMEF4	1	12942131	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		12942131	236308490	1	25761											
ZBTB8OS	339487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	33087489	33087489	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZBTB8OS	NM_178547	exon7	c.G514T	p.E172X	AAACTTCCGGGTT	.	47	24	74	0	.	90	A	33087489	C	A	33087489	4	1	195	1	0	0	0	0	0	1	0	0	17554	864	30	3	29	3	ZBTB8OS	1	33087489	Nonsense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	20145358	33087489	216163132	2	25762											
SERBP1	26135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67895954	67895954	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SERBP1	NM_001018067	exon1	c.C30A	p.G10G	CACGCAGCCGAAG	.	134	50	186	0	.	91	T	67895954	G	T	67895954	2	4	195	1	0	0	0	0	0	0	0	1	14075	958	34	3		3	SERBP1	1	67895954	Silent	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	34808465	67895954	181354667	3	25763											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109794350	109794350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CELSR2	NM_001408	exon1	c.A1649G	p.D550G	GACATGACTTCCC	.	68	26	147	0	.	526	G	109794350	A	G	109794350	3	3	195	1	0	0	0	0	1	0	0	0	3222	275	10	2	1651	2	CELSR2	1	109794350	Missense_Mutation	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	41898396	109794350	139456271	4	25764											
LCE1F	353137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152748923	152748923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	LCE1F	NM_178354	exon1	c.A76G	p.T26A	TGCCCCACACCGA	.	695	114	481	0	.	68	G	152748923	A	G	152748923	3	3	195	1	0	0	0	0	1	0	0	0	8664	159	6	2	78	2	LCE1F	1	152748923	Missense_Mutation	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	42954573	152748923	96501698	5	25765											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156849827	156849827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NTRK1	NM_002529	exon16	c.C2083T	p.P695S	TGGATGCCGCCCG	.	185	12	124	0	.	1393	T	156849827	C	T	156849827	3	4	195	1	0	0	0	0	1	0	0	0	10706	739	26	3	2275	3	NTRK1	1	156849827	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	4100904	156849827	92400794	6	25766											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211749002	211749002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC30A1	NM_021194	exon2	c.C1252A	p.Q418K	CAGGCTGAATGGT	.	125	120	107	1	.	93	T	211749002	G	T	211749002	3	4	195	1	0	0	0	0	1	0	0	0	14553	1299	45	3	275	3	SLC30A1	1	211749002	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	54899175	211749002	37501619	7	25767											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228494331	228494331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OBSCN	NM_001271223	exon55	c.C14789T	p.T4930I	CCCTCACTGTCAC	.	91	50	91	0	.	403	T	228494331	C	T	228494331	3	4	195	1	0	0	0	0	1	0	0	0	10812	565	20	3	12088	3	OBSCN	1	228494331	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	16745329	228494331	20756290	8	25768											
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	19553505	19553505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OSR1	NM_145260	exon2	c.A62G	p.Y21C	AAGGAGTAGTTGG	.	126	16	138	0	.	257	C	19553505	T	C	19553505	3	2	195	1	0	0	0	0	1	0	0	0	11293	1638	57	2	746	2	OSR1	2	19553505	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10		19553505	223645868	9	25769											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104195	168104195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	XIRP2	NM_152381	exon9	c.C6293T	p.S2098L	AAGAATCAGACAG	.	212	60	221	0	.	104	T	168104195	C	T	168104195	3	4	195	1	0	0	0	0	1	0	0	0	17427	838	29	3	6323	3	XIRP2	2	168104195	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	148550690	168104195	75095178	10	25770											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189871670	189871670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	COL3A1	NM_000090	exon44	c.C3209A	p.A1070D	GCCCTGCTGGCCC	.	186	98	187	0	.	581	A	189871670	C	A	189871670	3	1	195	1	0	0	0	0	1	0	0	0	3688	797	28	3	3383	3	COL3A1	2	189871670	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	21767475	189871670	53327703	11	25771											
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39226567	39226567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	XIRP1	NM_194293	exon2	c.C4370A	p.A1457D	TCAGGGGCCCCTT	.	54	23	83	0	.	158	T	39226567	G	T	39226567	3	4	195	1	0	0	0	0	1	0	0	0	17426	1203	42	3	1165	3	XIRP1	3	39226567	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10		39226567	158795863	12	25772											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C110G	p.S37C	TCCATTCTGGTGC	.	115	49	181	0	.	24361	G	41266113	C	G	41266113	3	3	195	1	0	0	0	0	1	0	0	0	4016	913	32	4	116	4	CTNNB1	3	41266113	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	2039546	41266113	156756317	13	25773											
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58517052	58517052	+	Missense_Mutation	SNP	G	G	T	rs75760511		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ACOX2	NM_003500	exon7	c.C745A	p.Q249K	CTGTTTGATCAAA	.	65	26	99	0	.	90	T	58517052	G	T	58517052	3	4	195	1	0	0	0	0	1	0	0	0	159	1299	45	3	1336	3	ACOX2	3	58517052	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	17250939	58517052	139505378	14	25774											
SENP7	57337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101136470	101136470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SENP7	NM_020654	exon5	c.A449G	p.E150G	AGAGGTTCTAATT	.	129	34	91	0	.	661	C	101136470	T	C	101136470	3	2	195	1	0	0	0	0	1	0	0	0	14051	1783	62	2	2783	2	SENP7	3	101136470	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	42619418	101136470	96885960	15	25775											
IGSF10	285313	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151161484	151161484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IGSF10	NM_178822	exon5	c.C5251T	p.R1751C	TGGTACGTCTCTC	.	197	51	173	0	.	102	A	151161484	G	A	151161484	3	1	195	1	0	0	0	0	1	0	0	0	7597	1145	40	1	2676	1	IGSF10	3	151161484	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	50025014	151161484	46860946	16	25776											
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10445315	10445315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZNF518B	NM_053042	exon3	c.C2638G	p.L880V	TGGAAAGCAGTCT	.	39	5	82	0	.	72	C	10445315	G	C	10445315	3	2	195	1	0	0	0	0	1	0	0	0	17960	971	34	4	590	4	ZNF518B	4	10445315	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10		10445315	180708961	17	25777											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	20490566	20490566	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLIT2	NM_004787	exon8	c.736delA	p.N246fs	GGCCATAATGTAG	.	101	38	191	0	.	521	-	20490566	A	-	20490566	7	5	195	1	0	1	0	1	0	0	0	0	14740	362	13	0	766	0	SLIT2	4	20490566	Frame_Shift_Del	DEL	A	TCGA-UB-A7MC-01A-11D-A33Q-10	10045251	20490566	170663710	18	25778											
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74998430	74998430	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	POC5	NM_001099271	exon5	c.G513A	p.K171K	CCGTACCTTAAGA	.	92	27	69	0	.	45	T	74998430	C	T	74998430	2	4	195	1	0	0	0	0	0	0	0	1	12177	695	24	3		3	POC5	5	74998430	Silent	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		74998430	105916830	19	25779											
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167835	140167835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCDHA1	NM_031410	exon1	c.C1960G	p.H654D	AAGGATCACGGTG	.	61	38	58	0	.	23	G	140167835	C	G	140167835	3	3	195	1	0	0	0	0	1	0	0	0	11519	826	29	4	1962	4	PCDHA1	5	140167835	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	65169405	140167835	40747425	20	25780											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562669	140562669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCDHB16	NM_020957	exon1	c.C535T	p.R179W	CATTTCCGGGTTC	.	78	16	64	0	.	92	T	140562669	C	T	140562669	3	4	195	1	0	0	0	0	1	0	0	0	11541	643	23	1	537	1	PCDHB16	5	140562669	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	394834	140562669	40352591	21	25781											
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160047535	160047535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATP10B	NM_025153	exon15	c.G2235T	p.Q745H	AGTCACCTGCTCA	.	179	50	198	0	.	72	A	160047535	C	A	160047535	3	1	195	1	0	0	0	0	1	0	0	0	1117	680	24	3	2198	3	ATP10B	5	160047535	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	19484866	160047535	20867725	22	25782											
HLA-DMB	3109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32906517	32906518	+	Frame_Shift_Ins	INS	-	-	GCCCATT	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HLA-DMB	NM_002118	exon2	c.281_282insAATGGGC	p.L94fs	TTCTGAAGCCCAT	.	148	45	150	0	.	90	GCCCATT	32906518	-	GCCCATT	32906517	7	5	195	1	0	1	1	0	0	0	0	0	7199	72	3	0	530	0	HLA-DMB	6	32906517	Frame_Shift_Ins	INS	-	TCGA-UB-A7MC-01A-11D-A33Q-10		32906517	138208550	23	25783											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64401788	64401788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PHF3	NM_015153	exon4	c.C2351G	p.T784S	CAGATACTTTGGA	.	215	104	142	0	.	229	G	64401788	C	G	64401788	3	3	195	1	0	0	0	0	1	0	0	0	11836	565	20	4	2365	4	PHF3	6	64401788	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	31495271	64401788	106713279	24	25784											
TAAR2	9287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132938951	132938951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TAAR2	NM_001033080	exon2	c.T394G	p.F132V	GATGAAAAATGGA	.	143	9	122	0	.	91	C	132938951	A	C	132938951	3	2	195	1	0	0	0	0	1	0	0	0	15487	14	1	5	665	5	TAAR2	6	132938951	Missense_Mutation	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	68537163	132938951	38176116	25	25785											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168314939	168314939	+	Missense_Mutation	SNP	G	G	A	rs149079362	byfrequency	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	MLLT4	NM_001040000	exon16	c.G2129A	p.R710Q	TTAGTCGGATCAC	.	140	63	98	0	G|0.999;A|0.001	685	A	168314939	G	A	168314939	3	1	195	1	0	0	0	0	1	0	0	0	9629	1116	39	1	2191	1	MLLT4	6	168314939	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	35375988	168314939	2800128	26	25786											
IL6	3569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22767222	22767222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IL6	NM_000600	exon2	c.T179A	p.I60N	GGTACATCCTCGA	.	84	56	122	0	.	514	A	22767222	T	A	22767222	3	1	195	1	0	0	0	0	1	0	0	0	7701	1435	50	4	185	4	IL6	7	22767222	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10		22767222	136371441	27	25787											
ZSCAN21	7589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99662023	99662023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZSCAN21	NM_145914	exon4	c.G1205C	p.G402A	ATGCGGGCCTCAG	.	62	19	60	0	.	93	C	99662023	G	C	99662023	3	2	195	1	0	0	0	0	1	0	0	0	18230	1203	42	4	1215	4	ZSCAN21	7	99662023	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	76894801	99662023	59476640	28	25788											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216738	3216738	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CSMD1	NM_033225	exon21	c.C3240T	p.A1080A	CTTGGTGGCACCT	.	156	41	118	0	.	86	A	3216738	G	A	3216738	2	1	195	1	0	0	0	0	0	0	0	1	3944	1335	47	3		3	CSMD1	8	3216738	Silent	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10		3216738	143147284	29	25789											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41554074	41554074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ANK1	NM_001142446	exon27	c.G2890C	p.G964R	AACCACCCCGGGC	.	69	23	90	0	.	716	G	41554074	C	G	41554074	3	3	195	1	0	0	0	0	1	0	0	0	620	623	22	4	3272	4	ANK1	8	41554074	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	38337336	41554074	104809948	30	25790											
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124340448	124340448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATAD2	NM_014109	exon25	c.G3850A	p.D1284N	TTTCATCAGAAAT	.	67	17	53	0	.	92	T	124340448	C	T	124340448	3	4	195	1	0	0	0	0	1	0	0	0	1071	826	29	3	338	3	ATAD2	8	124340448	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	82786374	124340448	22023574	31	25791											
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96416768	96416768	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PHF2	NM_005392	exon7	c.C863G	p.S288C	CTGCCTCTAACCA	.	59	40	80	0	.	91	G	96416768	C	G	96416768	3	3	195	1	0	0	0	0	1	0	0	0	11830	913	32	4	889	4	PHF2	9	96416768	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		96416768	44796663	32	25792											
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	7205790	7205790	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SFMBT2	NM_001029880	exon21	c.2627delA	p.K876fs	CATAACTTGATGG	.	68	37	94	0	.	141	-	7205790	T	-	7205790	7	5	195	1	0	1	0	1	0	0	0	0	14158	1609	56	0	61	0	SFMBT2	10	7205790	Frame_Shift_Del	DEL	T	TCGA-UB-A7MC-01A-11D-A33Q-10		7205790	128328957	33	25793											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63851284	63851284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ARID5B	NM_032199	exon10	c.T2062C	p.S688P	ATCATGTCCCCAC	.	159	10	143	0	.	94	C	63851284	T	C	63851284	3	2	195	1	0	0	0	0	1	0	0	0	922	1667	58	2	2100	2	ARID5B	10	63851284	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	56645494	63851284	71683463	34	25794											
SLC29A2	3177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66135014	66135014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC29A2	NM_001532	exon7	c.T654C	p.F218F	GCGGGCAAACTTC	.	62	56	131	0	.	91	G	66135014	A	G	66135014	2	3	195	1	0	0	0	0	0	0	0	1	14535	127	5	2		2	SLC29A2	11	66135014	Silent	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10		66135014	68871502	35	25795											
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20858984	20858984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLCO1C1	NM_017435	exon4	c.C373T	p.L125F	ACACTGCTCATTG	.	89	19	57	0	.	97	T	20858984	C	T	20858984	3	4	195	1	0	0	0	0	1	0	0	0	14725	797	28	3	383	3	SLCO1C1	12	20858984	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		20858984	112992911	36	25796											
SMUG1	23583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54576393	54576393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SMUG1	NM_001243790	exon4	c.A300C	p.E100D	GCTTACTTCCCCA	.	73	20	74	0	.	227	G	54576393	T	G	54576393	3	3	195	1	0	0	0	0	1	0	0	0	14818	1606	56	5	516	5	SMUG1	12	54576393	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	33717409	54576393	79275502	37	25797											
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94703723	94703723	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CCDC41	NM_016122	exon16	c.A1972T	p.M658L	GTTCCATGCTTGG	.	147	57	170	0	.	90	A	94703723	T	A	94703723	3	1	195	1	0	0	0	0	1	0	0	0	2813	1464	51	4	141	4	CCDC41	12	94703723	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	40127330	94703723	39148172	38	25798											
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	101561932	101561932	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC5A8	NM_145913	exon11	c.1262delG	p.G421fs	GGTCCACCAACCA	.	207	59	235	0	.	90	-	101561932	C	-	101561932	7	5	195	1	0	1	0	1	0	0	0	0	14671	507	18	0	590	0	SLC5A8	12	101561932	Frame_Shift_Del	DEL	C	TCGA-UB-A7MC-01A-11D-A33Q-10	6858209	101561932	32289963	39	25799											
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102439885	102439885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_016053	exon3	c.C163G	p.L55V	GTGAAAGGTCTGC	.	194	108	248	0	.	.	C	102439885	G	C	102439885	3	2	195	1	0	0	0	0	1	0	0	0	2823	1000	35	4	372	4	CCDC53	12	102439885	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	877953	102439885	31412010	40	25800											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104048376	104048376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	STAB2	NM_017564	exon13	c.T1451C	p.V484A	AGAAGGTAAAAAT	.	140	41	158	0	.	104	C	104048376	T	C	104048376	3	2	195	1	0	0	0	0	1	0	0	0	15237	1638	57	2	1501	2	STAB2	12	104048376	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	1608491	104048376	29803519	41	25801											
STX2	2054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	131285985	131285985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	STX2	NM_194356	exon7	c.G512C	p.G171A	GGCTTCCCGCTCT	.	150	12	165	0	.	90	G	131285985	C	G	131285985	3	3	195	1	0	0	0	0	1	0	0	0	15344	623	22	4	452	4	STX2	12	131285985	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	27237609	131285985	2565910	42	25802											
PCCA	5095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100925472	100925472	+	Silent	SNP	C	C	A	rs138149179	alternate_allele	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCCA	NM_001178004	exon12	c.C937A	p.R313R	GAGACTCGAAGAG	.	179	57	88	0	C|0.999;T|0.000	227	A	100925472	C	A	100925472	2	1	195	1	0	0	0	0	0	0	0	1	11504	876	31	1		1	PCCA	13	100925472	Silent	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		100925472	14244406	43	25803											
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	109707405	109707405	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	MYO16	NM_001198950	exon26	c.G3060A	p.K1020K	AAAAAAGAAAGGA	.	570	349	336	0	.	142	A	109707405	G	A	109707405	2	1	195	1	0	0	0	0	0	0	0	1	10064	933	33	3		3	MYO16	13	109707405	Silent	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	8781933	109707405	5462473	44	25804											
RASA3	22821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114751254	114751254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	RASA3	NM_007368	exon23	c.A2261C	p.K754T	ACAGATTTGCTCC	.	149	89	117	0	.	658	G	114751254	T	G	114751254	3	3	195	1	0	0	0	0	1	0	0	0	13062	1841	64	5	251	5	RASA3	13	114751254	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	5043849	114751254	418624	45	25805											
OR4M1	441670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20249255	20249255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR4M1	NM_001005500	exon1	c.C774A	p.Y258X	CATCTACATTTAT	.	368	82	355	0	.	68	A	20249255	C	A	20249255	4	1	195	1	0	0	0	0	0	1	0	0	11075	489	17	3	776	3	OR4M1	14	20249255	Nonsense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		20249255	87100285	46	25806											
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41800366	41800366	+	Missense_Mutation	SNP	A	A	G	rs55683312		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	LTK	NM_002344	exon9	c.T1150C	p.C384R	AAGGGCAGTGACT	.	70	22	73	0	A|0.999;G|0.001	1377	G	41800366	A	G	41800366	3	3	195	1	0	0	0	0	1	0	0	0	9080	188	7	2	1492	2	LTK	15	41800366	Missense_Mutation	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10		41800366	60731026	47	25807											
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42378519	42378519	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PLA2G4D	NM_178034	exon4	c.T279C	p.Y93Y	CTCATCATAGATG	.	50	30	65	0	.	136	G	42378519	A	G	42378519	2	3	195	1	0	0	0	0	0	0	0	1	12004	224	8	2		2	PLA2G4D	15	42378519	Silent	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	578153	42378519	60152873	48	25808											
ISG20	3669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89182609	89182609	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ISG20	NM_002201	exon2	c.C12T	p.S4S	TGGGAGCCGTGAG	.	41	29	52	0	.	90	T	89182609	C	T	89182609	2	4	195	1	0	0	0	0	0	0	0	1	7854	738	26	3		3	ISG20	15	89182609	Silent	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	46804090	89182609	13348783	49	25809											
HSD3B7	80270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30997473	30997473	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HSD3B7	NM_025193	exon3	c.270delA	p.V90fs	GCTGGTAGACGTG	.	162	43	216	0	.	90	-	30997473	A	-	30997473	7	5	195	1	0	1	0	1	0	0	0	0	7392	407	15	0	276	0	HSD3B7	16	30997473	Frame_Shift_Del	DEL	A	TCGA-UB-A7MC-01A-11D-A33Q-10		30997473	59357280	50	25810											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350329	89350329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ANKRD11	NM_001256183	exon9	c.C2621T	p.A874V	AGCTTGGCCACAG	.	81	21	74	0	.	139	A	89350329	G	A	89350329	3	1	195	1	0	0	0	0	1	0	0	0	639	1203	42	3	5390	3	ANKRD11	16	89350329	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	58352856	89350329	1004424	51	25811											
C16orf55	124045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89724816	89724816	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	C16orf55	NM_001271910	exon2	c.A198T	p.A66A	GCCGGCAGCTTCG	.	39	24	72	0	.	90	T	89724816	A	T	89724816	2	4	195	1	0	0	0	0	0	0	0	1	1820	175	7	4		4	C16orf55	16	89724816	Silent	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	374487	89724816	629937	52	25812											
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5290351	5290351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NUP88	NM_002532	exon15	c.C1996A	p.Q666K	TCAGCTGTAATTC	.	46	43	74	0	.	204	T	5290351	G	T	5290351	3	4	195	1	0	0	0	0	1	0	0	0	10771	1386	48	3	241	3	NUP88	17	5290351	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10		5290351	75904859	53	25813											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon7	c.G743A	p.R248Q	GGCCTCCGGTTCA	.	46	42	102	0	C|1.000;|0.000	70225	T	7577538	C	T	7577538	3	4	195	1	0	0	0	0	1	0	0	0	16378	652	23	1	547	1	TP53	17	7577538	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	2287187	7577538	73617672	54	25814											
PIPOX	51268	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27380528	27380528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PIPOX	NM_016518	exon4	c.G575A	p.S192N	CCAGGAGCTACCA	.	216	103	185	1	.	90	A	27380528	G	A	27380528	3	1	195	1	0	0	0	0	1	0	0	0	11943	971	34	3	589	3	PIPOX	17	27380528	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	19802990	27380528	53814682	55	25815											
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OTOP2	NM_178160	exon6	c.G1126C	p.A376P	GGTGCCGCCCTGG	.	130	68	122	0	.	134	C	72926856	G	C	72926856	3	2	195	1	0	0	0	0	1	0	0	0	11306	1087	38	4	1144	4	OTOP2	17	72926856	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	45546328	72926856	8268354	56	25816											
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10906053	10906053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	DNM2	NM_001005361	exon9	c.G1134T	p.E378D	GATGGAGTTTGAC	.	45	29	53	0	.	471	T	10906053	G	T	10906053	3	4	195	1	0	0	0	0	1	0	0	0	4672	1020	36	3	1168	3	DNM2	19	10906053	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10		10906053	48222930	57	25817											
PRNP	5621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4680289	4680289	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PRNP	NM_000311	exon2	c.C423T	p.F141F	ACATTTCGGCAGT	.	92	23	115	0	.	514	T	4680289	C	T	4680289	2	4	195	1	0	0	0	0	0	0	0	1	12544	883	31	1		1	PRNP	20	4680289	Silent	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		4680289	58345231	58	25818											
PDRG1	81572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30538175	30538175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PDRG1	NM_030815	exon2	c.A103G	p.T35A	TTTTAGTGTCCAG	.	66	44	66	0	.	90	C	30538175	T	C	30538175	3	2	195	1	0	0	0	0	1	0	0	0	11690	1696	59	2	314	2	PDRG1	20	30538175	Missense_Mutation	SNP	T	TCGA-UB-A7MC-01A-11D-A33Q-10	25857886	30538175	32487345	59	25819											
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44511960	44511960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZSWIM1	NM_080603	exon2	c.C729A	p.H243Q	GGCTCACCGCTGG	.	41	10	70	0	.	91	A	44511960	C	A	44511960	3	1	195	1	0	0	0	0	1	0	0	0	18237	506	18	3	731	3	ZSWIM1	20	44511960	Missense_Mutation	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10	13973785	44511960	18513560	60	25820											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46265070	46265070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NCOA3	NM_001174088	exon12	c.A1970G	p.K657R	GTTGTAAAGAATC	.	93	58	126	0	.	229	G	46265070	A	G	46265070	3	3	195	1	0	0	0	0	1	0	0	0	10230	14	1	2	2008	2	NCOA3	20	46265070	Missense_Mutation	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	1753110	46265070	16760450	61	25821											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57829551	57829551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZNF831	NM_178457	exon5	c.A4787G	p.Y1596C	GCCAGTATGGGTG	.	194	62	233	0	.	126	G	57829551	A	G	57829551	3	3	195	1	0	0	0	0	1	0	0	0	18182	449	16	2	4805	2	ZNF831	20	57829551	Missense_Mutation	SNP	A	TCGA-UB-A7MC-01A-11D-A33Q-10	11564481	57829551	5195969	62	25822											
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60318687	60318687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CDH4	NM_001794	exon3	c.G238T	p.G80W	AAAGTTGGGGCAG	.	109	29	147	1	.	282	T	60318687	G	T	60318687	3	4	195	1	0	0	0	0	1	0	0	0	3112	1348	47	3	248	3	CDH4	20	60318687	Missense_Mutation	SNP	G	TCGA-UB-A7MC-01A-11D-A33Q-10	2489136	60318687	2706833	63	25823											
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53277343	53277343	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IQSEC2	NM_001111125	exon7	c.G2535A	p.R845R	CTGAACCCGGATA	.	88	79	120	0	.	178	T	53277343	C	T	53277343	2	4	195	1	0	0	0	0	0	0	0	1	7818	610	22	3		3	IQSEC2	23	53277343	Silent	SNP	C	TCGA-UB-A7MC-01A-11D-A33Q-10		53277343	101993217	64	25824											
ZNF436	80818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23689096	23689096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF436	NM_001077195	exon4	c.G779A	p.S260N	CTCCGGCTGAAGC	.	87	36	115	0	.	153	T	23689096	C	T	23689096	3	4	196	1	0	0	0	0	1	0	0	0	17906	797	28	3	637	3	ZNF436	1	23689096	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		23689096	225561525	1	25825											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27106592	27106592	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ARID1A	NM_006015	exon20	c.C6203G	p.S2068W	ACATCTCGGGGCA	.	38	17	32	0	.	584	G	27106592	C	G	27106592	3	3	196	1	0	0	0	0	1	0	0	0	913	893	31	4	6281	4	ARID1A	1	27106592	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	3417496	27106592	222144029	2	25826											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27942229	27942229	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FGR	NM_001042729	exon8	c.G809C	p.G270A	CCGGTGCCCAGCC	.	71	20	67	0	.	547	G	27942229	C	G	27942229	3	3	196	1	0	0	0	0	1	0	0	0	5874	739	26	4	804	4	FGR	1	27942229	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	835637	27942229	221308392	3	25827											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207460	32207460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	BAI2	NM_001703	exon9	c.G1526C	p.G509A	GGGTAGCCCTGCG	.	50	16	62	0	.	526	G	32207460	C	G	32207460	3	3	196	1	0	0	0	0	1	0	0	0	1299	739	26	4	3331	4	BAI2	1	32207460	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	4265231	32207460	217043161	4	25828											
DNAJB4	11080	broad.mit.edu;mdanderson.org	37	1	78479284	78479284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNAJB4	NM_007034	exon2	c.C761T	p.A254V	ATACTGCTAAAAT	.	10	7	9	0	.	226	T	78479284	C	T	78479284	3	4	196	1	0	0	0	0	1	0	0	0	4622	797	28	3	767	3	DNAJB4	1	78479284	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	46271824	78479284	170771337	5	25829											
SLC44A3	126969	hgsc.bcm.edu;bcgsc.ca	37	1	95357851	95357859	+	In_Frame_Del	DEL	TTTCACTGT	TTTCACTGT	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	TTTCACTGT	TTTCACTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SLC44A3	NM_001114106	exon14	c.1635_1643del	p.545_548del	GGTGTGTTTCACT	.	233	49	332	0	.	91	-	95357859	TTTCACTGT	-	95357851	7	5	196	1	0	1	0	1	0	0	0	0	14637	1731	60	0	1689	0	SLC44A3	1	95357851	In_Frame_Del	DEL	TTTCACTGT	TCGA-UB-A7MD-01A-12D-A34Z-10	16878567	95357851	153892770	6	25830											
FASLG	356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172633481	172633481	+	Silent	SNP	C	C	T	rs143306673		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FASLG	NM_000639	exon3	c.C402T	p.P134P	CCACCCCAGTCCA	.	196	43	121	0	C|1.000;T|0.000	618	T	172633481	C	T	172633481	2	4	196	1	0	0	0	0	0	0	0	1	5682	581	21	3		3	FASLG	1	172633481	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	77275630	172633481	76617140	7	25831											
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230914797	230914797	+	Missense_Mutation	SNP	C	C	A	rs200401992	alternate_allele	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CAPN9	NM_006615	exon9	c.C1032A	p.D344E	GGAAGACGCGATC	.	68	27	41	0	C|0.999;T|0.001	91	A	230914797	C	A	230914797	3	1	196	1	0	0	0	0	1	0	0	0	2632	535	19	1	1066	1	CAPN9	1	230914797	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	58281316	230914797	18335824	8	25832											
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248458788	248458789	+	Missense_Mutation	DNP	GG	GG	TA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	p.A31V	AACGGTGGCCAGA	.	202	51	221	0	.	.	TA	248458789	GG	TA	248458788	3	4	196	1	0	0	0	0	1	0	0	0	11019	1335	47	3	872	3	OR2T12	1	248458788	Missense_Mutation	DNP	GG	TCGA-UB-A7MD-01A-12D-A34Z-10	17543991	248458788	791833	9	25833											
PXDN	7837	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1668790	1668790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	PXDN,NS,NS,0	PXDN	NM_012293	exon11	c.G1348A	p.V450M	AATCCACGGTCTG	.	27	9	23	0	.	166	T	1668790	C	T	1668790	3	4	196	1	0	0	0	0	1	0	0	0	12847	536	19	1	3143	1	PXDN	2	1668790	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		1668790	241530583	10	25834											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27460247	27460247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CAD	NM_004341	exon28	c.G4397T	p.G1466V	TCCCAGGATTGAT	.	43	18	62	0	.	295	T	27460247	G	T	27460247	3	4	196	1	0	0	0	0	1	0	0	0	2565	1188	41	3	4507	3	CAD	2	27460247	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	25791457	27460247	215739126	11	25835											
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55825809	55825809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SMEK2	NM_001122964	exon4	c.G664A	p.V222I	CCACGACATCCAT	.	137	46	94	0	.	228	T	55825809	C	T	55825809	3	4	196	1	0	0	0	0	1	0	0	0	14794	478	17	3	1941	3	SMEK2	2	55825809	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	28365562	55825809	187373564	12	25836											
PCDP1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120385299	120385299	+	Silent	SNP	G	G	A	rs202085071		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_001271049	exon16	c.G1587A	p.S529S	TGTGTCGCCCAAG	.	134	45	126	0	G|0.999;A|0.001	.	A	120385299	G	A	120385299	2	1	196	1	0	0	0	0	0	0	0	1	11572	1074	38	1		1	PCDP1	2	120385299	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	64559490	120385299	122814074	13	25837											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168098387	168098387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	XIRP2	NM_001199143	exon9	c.C1242A	p.D414E	TTCTGACAAAGAG	.	57	19	50	0	.	104	A	168098387	C	A	168098387	3	1	196	1	0	0	0	0	1	0	0	0	17427	477	17	3	1169	3	XIRP2	2	168098387	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	47713088	168098387	75100986	14	25838											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168106758	168106758	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	XIRP2	NM_152381	exon9	c.A8856G	p.E2952E	ACGTGAAGAACTG	.	136	37	177	0	.	104	G	168106758	A	G	168106758	2	3	196	1	0	0	0	0	0	0	0	1	17427	69	3	2		2	XIRP2	2	168106758	Silent	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	8371	168106758	75092615	15	25839											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	186671281	186671281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FSIP2	NM_173651	exon17	c.G17515C	p.E5839Q	GAAGAGGAAGAGA	.	61	5	70	0	.	90	C	186671281	G	C	186671281	3	2	196	1	0	0	0	0	1	0	0	0	6075	1175	41	4	17581	4	FSIP2	2	186671281	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	18564523	186671281	56528092	16	25840											
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203834763	203834763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ALS2CR8	NM_024744	exon11	c.G1075A	p.V359I	AACTTGGTAGATG	.	262	60	275	0	.	136	A	203834763	G	A	203834763	3	1	196	1	0	0	0	0	1	0	0	0	555	1261	44	3	1105	3	ALS2CR8	2	203834763	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	17163482	203834763	39364610	17	25841											
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	207174747	207174747	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZDBF2	NM_020923	exon5	c.G5495A	p.W1832X	AAACATGGTCTCA	.	74	20	96	0	.	3	A	207174747	G	A	207174747	4	1	196	1	0	0	0	0	0	1	0	0	17596	1357	47	3	5505	3	ZDBF2	2	207174747	Nonsense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	3339984	207174747	36024626	18	25842											
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222347339	222347339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EPHA4	NM_004438	exon5	c.C1051A	p.P351T	TCTGAGGGCTACT	.	83	31	71	0	.	1441	T	222347339	G	T	222347339	3	4	196	1	0	0	0	0	1	0	0	0	5169	1232	43	3	1961	3	EPHA4	2	222347339	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	15172592	222347339	20852034	19	25843											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228855885	228855885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SPHKAP	NM_001142644	exon11	c.C4790T	p.P1597L	GTAGGCGGTCCAG	.	92	24	100	0	.	167	A	228855885	G	A	228855885	3	1	196	1	0	0	0	0	1	0	0	0	15047	1116	39	1	320	1	SPHKAP	2	228855885	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	6508546	228855885	14343488	20	25844											
DNER	92737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230411752	230411752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNER	NM_139072	exon5	c.G904A	p.V302M	CCTTCACCACCAG	.	54	21	34	0	.	524	T	230411752	C	T	230411752	3	4	196	1	0	0	0	0	1	0	0	0	4667	507	18	3	1345	3	DNER	2	230411752	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	1555867	230411752	12787621	21	25845											
KCNJ13	3769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233632998	233632998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	KCNJ13	NM_002242	exon3	c.T986C	p.L329P	GAAACCAGAGGAG	.	153	54	193	0	.	90	G	233632998	A	G	233632998	3	3	196	1	0	0	0	0	1	0	0	0	8047	188	7	2	100	2	KCNJ13	2	233632998	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	3221246	233632998	9566375	22	25846											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238256451	238256451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	COL6A3	NM_004369	exon31	c.G7028C	p.R2343T	CTTACCCTTCGGC	.	43	10	55	0	.	526	G	238256451	C	G	238256451	3	3	196	1	0	0	0	0	1	0	0	0	3701	695	24	4	2561	4	COL6A3	2	238256451	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	4623453	238256451	4942922	23	25847											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	TACCTGGACTCTG	.	124	37	147	0	G|1.000;T|0.000	24361	A	41266097	G	A	41266097	3	1	196	1	0	0	0	0	1	0	0	0	4016	1174	41	3	100	3	CTNNB1	3	41266097	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		41266097	156756333	24	25848											
ADAMTS9	56999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64633644	64633644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ADAMTS9	NM_182920	exon11	c.C1682A	p.A561D	CCATCGGCCCAGG	.	21	4	20	0	.	230	T	64633644	G	T	64633644	3	4	196	1	0	0	0	0	1	0	0	0	273	1203	42	3	4241	3	ADAMTS9	3	64633644	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	23367547	64633644	133388786	25	25849											
OR5AC2	81050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97806470	97806470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OR5AC2	NM_054106	exon1	c.G454T	p.V152L	TCATATGTAATTG	.	97	32	108	1	.	69	T	97806470	G	T	97806470	3	4	196	1	0	0	0	0	1	0	0	0	11141	1377	48	3	456	3	OR5AC2	3	97806470	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	33172826	97806470	100215960	26	25850											
GSK3B	2932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119631579	119631579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GSK3B	NM_002093	exon6	c.T687G	p.F229L	GGCTCCAAAGATC	.	85	21	66	0	.	978	C	119631579	A	C	119631579	3	2	196	1	0	0	0	0	1	0	0	0	6824	127	5	5	642	5	GSK3B	3	119631579	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	21825109	119631579	78390851	27	25851											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724818	30724818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PCDH7	NM_032457	exon1	c.C1774A	p.L592M	GACATCCTGGTCA	.	38	11	54	0	.	229	A	30724818	C	A	30724818	3	1	196	1	0	0	0	0	1	0	0	0	11516	680	24	3	1776	3	PCDH7	4	30724818	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		30724818	160429458	28	25852											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123267816	123267816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	KIAA1109	NM_015312	exon73	c.A12772G	p.M4258V	TATGATATGCGCC	.	63	21	52	0	.	80	G	123267816	A	G	123267816	3	3	196	1	0	0	0	0	1	0	0	0	8208	449	16	2	13062	2	KIAA1109	4	123267816	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	92542998	123267816	67886460	29	25853											
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	36686198	36686198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SLC1A3	NM_004172	exon10	c.G1456A	p.G486R	GTACTGGGAGACT	.	81	6	89	0	.	90	A	36686198	G	A	36686198	3	1	196	1	0	0	0	0	1	0	0	0	14433	1233	43	3	1507	3	SLC1A3	5	36686198	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		36686198	144229062	30	25854											
EPB41L4A	64097	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	111600696	111600696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EPB41L4A	NM_022140	exon6	c.G451T	p.D151Y	ATGGGTCATAATC	.	78	17	86	0	.	91	A	111600696	C	A	111600696	3	1	196	1	0	0	0	0	1	0	0	0	5155	826	29	3	1681	3	EPB41L4A	5	111600696	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	74914498	111600696	69314564	31	25855											
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131324528	131324528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ACSL6	NM_001009185	exon6	c.C622T	p.P208S	CCCCAGGGCCCAG	.	35	10	42	0	.	229	A	131324528	G	A	131324528	3	1	196	1	0	0	0	0	1	0	0	0	181	1232	43	3	1692	3	ACSL6	5	131324528	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	19723832	131324528	49590732	32	25856											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136314459	136314459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SPOCK1	NM_004598	exon11	c.C1204T	p.R402W	GCTCCCGTTCATA	.	139	30	143	0	.	91	A	136314459	G	A	136314459	3	1	196	1	0	0	0	0	1	0	0	0	15078	1144	40	1	119	1	SPOCK1	5	136314459	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	4989931	136314459	44600801	33	25857											
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167891	140167891	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PCDHA1	NM_031410	exon1	c.C2016T	p.S672S	GGAGAGCGGCCAG	.	57	12	51	0	.	23	T	140167891	C	T	140167891	2	4	196	1	0	0	0	0	0	0	0	1	11519	767	27	1		1	PCDHA1	5	140167891	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	3853432	140167891	40747369	34	25858											
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158158108	158158108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EBF1	NM_024007	exon11	c.G1094C	p.R365P	GGGTGCCGAGGAA	.	34	8	29	0	.	92	G	158158108	C	G	158158108	3	3	196	1	0	0	0	0	1	0	0	0	4880	652	23	4	705	4	EBF1	5	158158108	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	17990217	158158108	22757152	35	25859											
NPM1	4869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170837534	170837534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NPM1	NM_002520	exon11	c.A850G	p.I284V	CAGGCTATTCAAG	.	28	9	29	0	.	12448	G	170837534	A	G	170837534	3	3	196	1	0	0	0	0	1	0	0	0	10587	449	16	2	905	2	NPM1	5	170837534	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	12679426	170837534	10077726	36	25860											
NOL7	51406	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13620548	13620548	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NOL7	NM_016167	exon6	c.C609G	p.T203T	AGGAACCAACAGG	.	103	6	132	0	.	90	G	13620548	C	G	13620548	2	3	196	1	0	0	0	0	0	0	0	1	10526	581	21	4		4	NOL7	6	13620548	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		13620548	157494519	37	25861											
TRIM26	7726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30156977	30156977	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TRIM26	NM_003449	exon10	c.905-1G>T	.	GCTTCCCTGGGGA	.	30	7	39	0	.	206	A	30156977	C	A	30156977	5	1	196	1	0	0	0	0	0	0	1	0	16497	695	24	3	723	3	TRIM26	6	30156977	Splice_Site	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	16536429	30156977	140958090	38	25862											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38795995	38795995	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNAH8	NM_001206927	exon30	c.A4119G	p.E1373E	AGTTGAAGTAACC	.	55	13	44	0	.	615	G	38795995	A	G	38795995	2	3	196	1	0	0	0	0	0	0	0	1	4607	69	3	2		2	DNAH8	6	38795995	Silent	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	8639018	38795995	132319072	39	25863											
TREM1	54210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41250178	41250178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TREM1	NM_001242590	exon2	c.G361C	p.E121Q	GAGGCTCCTTGGG	.	84	22	95	0	.	577	G	41250178	C	G	41250178	3	3	196	1	0	0	0	0	1	0	0	0	16467	864	30	4	355	4	TREM1	6	41250178	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	2454183	41250178	129864889	40	25864											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71009833	71009833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	COL9A1	NM_001851	exon4	c.G212A	p.R71K	GCTCTTCTAGATG	.	144	51	129	0	.	94	T	71009833	C	T	71009833	3	4	196	1	0	0	0	0	1	0	0	0	3707	913	32	3	2769	3	COL9A1	6	71009833	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	29759655	71009833	100105234	41	25865											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	p.T432L	GCAACTGTCTGTC	.	96	28	106	0	.	.	AA	74227628	GT	AA	74227627	3	1	196	1	0	0	0	0	1	0	0	0	4923	1377	48	3	97	3	EEF1A1	6	74227627	Missense_Mutation	DNP	GT	TCGA-UB-A7MD-01A-12D-A34Z-10	3217794	74227627	96887440	42	25866											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90452952	90452952	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	MDN1	NM_014611	exon31	c.G4365C	p.L1455L	CTGAACCAGAGGC	.	129	38	123	0	.	100	G	90452952	C	G	90452952	2	3	196	1	0	0	0	0	0	0	0	1	9415	581	21	4		4	MDN1	6	90452952	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	16225325	90452952	80662115	43	25867											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160454117	160454117	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	IGF2R	NM_000876	exon9	c.A1189C	p.R397R	GCAGGAAGATACC	.	27	16	48	0	.	118	C	160454117	A	C	160454117	2	2	196	1	0	0	0	0	0	0	0	1	7576	64	3	5		5	IGF2R	6	160454117	Silent	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	70001165	160454117	10660950	44	25868											
OSBPL3	26031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24904971	24904971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OSBPL3	NM_145321	exon7	c.A663C	p.K221N	GGAGCATTTTTCC	.	106	21	118	0	.	204	G	24904971	T	G	24904971	3	3	196	1	0	0	0	0	1	0	0	0	11279	1490	52	5	2068	5	OSBPL3	7	24904971	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10		24904971	134233692	45	25869											
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87910335	87910335	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	STEAP4	NM_001205315	exon5	c.T1044C	p.Y348Y	AGCCACATATGAA	.	112	30	97	0	.	90	G	87910335	A	G	87910335	2	3	196	1	0	0	0	0	0	0	0	1	15279	224	8	2		2	STEAP4	7	87910335	Silent	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	63005364	87910335	71228328	46	25870											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151878921	151878922	+	Missense_Mutation	DNP	AG	AG	TA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	p.T2008I	TGGTTTAGTAAAG	.	92	35	75	0	.	.	TA	151878922	AG	TA	151878921	3	4	196	1	0	0	0	0	1	0	0	0	9622	407	15	4	8807	4	MLL3	7	151878921	Missense_Mutation	DNP	AG	TCGA-UB-A7MD-01A-12D-A34Z-10	63968586	151878921	7259742	47	25871											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412438	81412438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZBTB10	NM_023929	exon2	c.A1682G	p.N561S	TTTGGAATAATAT	.	121	55	110	0	.	522	G	81412438	A	G	81412438	3	3	196	1	0	0	0	0	1	0	0	0	17520	101	4	2	1688	2	ZBTB10	8	81412438	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10		81412438	64951584	48	25872											
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133634904	133634904	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	LRRC6	NM_012472	exon7	c.G867A	p.R289R	CAAAGTCCTGGGT	.	235	61	162	0	.	92	T	133634904	C	T	133634904	2	4	196	1	0	0	0	0	0	0	0	1	9016	854	30	3		3	LRRC6	8	133634904	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	52222466	133634904	12729118	49	25873											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141756887	141756887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PTK2	NM_005607	exon18	c.T1556C	p.I519T	ATGATTATCCAGA	.	84	9	64	0	.	1517	G	141756887	A	G	141756887	3	3	196	1	0	0	0	0	1	0	0	0	12762	449	16	2	1728	2	PTK2	8	141756887	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	8121983	141756887	4607135	50	25874											
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36630339	36630339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	MELK	NM_014791	exon9	c.T710G	p.I237S	GTAGCATTCTGCT	.	61	20	59	0	.	760	G	36630339	T	G	36630339	3	3	196	1	0	0	0	0	1	0	0	0	9470	1493	52	5	740	5	MELK	9	36630339	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10		36630339	104583092	51	25875											
SYK	6850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	93650155	93650155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SYK	NM_003177	exon12	c.G1706T	p.G569V	CCTATGGGCAGAA	.	107	8	118	0	.	1402	T	93650155	G	T	93650155	3	4	196	1	0	0	0	0	1	0	0	0	15435	1232	43	3	1748	3	SYK	9	93650155	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	57019816	93650155	47563276	52	25876											
NCBP1	4686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100425320	100425320	+	Missense_Mutation	SNP	C	C	G	rs200307901	alternate_allele	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NCBP1	NM_002486	exon18	c.C1788G	p.N596K	GAGGAACCATCCA	.	65	14	89	0	C|0.999;A|0.000	90	G	100425320	C	G	100425320	3	3	196	1	0	0	0	0	1	0	0	0	10211	506	18	4	1858	4	NCBP1	9	100425320	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	6775165	100425320	40788111	53	25877											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133914252	133914252	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	LAMC3	NM_006059	exon5	c.C978T	p.P326P	CATAGCCTGCAAC	.	25	11	24	0	.	93	T	133914252	C	T	133914252	2	4	196	1	0	0	0	0	0	0	0	1	8616	695	24	3		3	LAMC3	9	133914252	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	33488932	133914252	7299179	54	25878											
OLFM1	10439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138011380	138011380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OLFM1	NM_014279	exon6	c.C760T	p.R254C	AACAACCGCTTCG	.	42	11	71	0	.	70	T	138011380	C	T	138011380	3	4	196	1	0	0	0	0	1	0	0	0	10852	652	23	1	792	1	OLFM1	9	138011380	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	4097128	138011380	3202051	55	25879											
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138837090	138837090	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	UBAC1	NM_016172	exon7	c.G660T	p.S220S	AGGCACCGACATG	.	39	17	31	0	.	92	A	138837090	C	A	138837090	2	1	196	1	0	0	0	0	0	0	0	1	16831	639	23	1		1	UBAC1	9	138837090	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	825710	138837090	2376341	56	25880											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16882374	16882374	+	Silent	SNP	C	C	T	rs80308930	byfrequency	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CUBN	NM_001081	exon62	c.G9987A	p.S3329S	GTCTTGCGAGGTC	.	53	18	65	0	C|0.998;T|0.002	166	T	16882374	C	T	16882374	2	4	196	1	0	0	0	0	0	0	0	1	4051	755	27	1		1	CUBN	10	16882374	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		16882374	118652373	57	25881											
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70507323	70507323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CCAR1	NM_018237	exon8	c.G826A	p.A276T	CAAAAAGGTATCT	.	44	7	60	0	.	159	A	70507323	G	A	70507323	3	1	196	1	0	0	0	0	1	0	0	0	2730	1014	35	3	852	3	CCAR1	10	70507323	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	53624949	70507323	65027424	58	25882											
DUSP13	51207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76865548	76865548	+	Missense_Mutation	SNP	C	C	T	rs200574063		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DUSP13	NM_001007271	exon3	c.G446A	p.R149Q	GACAGCCGCTGGT	.	52	25	50	0	.	226	T	76865548	C	T	76865548	3	4	196	1	0	0	0	0	1	0	0	0	4813	652	23	1	1020	1	DUSP13	10	76865548	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	6358225	76865548	58669199	59	25883											
SLC1A2	6506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35308464	35308464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SLC1A2	NM_004171	exon8	c.G1126C	p.E376Q	TTTCTTCCAGGCA	.	60	24	61	0	.	516	G	35308464	C	G	35308464	3	3	196	1	0	0	0	0	1	0	0	0	14432	864	30	4	614	4	SLC1A2	11	35308464	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		35308464	99698052	60	25884											
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587559	55587559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OR5D18	NM_001001952	exon1	c.T454A	p.W152R	TATGCCTGGGGAG	.	177	58	206	0	.	71	A	55587559	T	A	55587559	3	1	196	1	0	0	0	0	1	0	0	0	11157	1580	55	4	456	4	OR5D18	11	55587559	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	20279095	55587559	79418957	61	25885											
GAL	51083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68455540	68455540	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GAL	NM_015973	exon4	c.G195A	p.E65E	GCGGGAGCTGCGG	.	67	24	62	0	.	90	A	68455540	G	A	68455540	2	1	196	1	0	0	0	0	0	0	0	1	6196	962	34	3		3	GAL	11	68455540	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	12867981	68455540	66550976	62	25886											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757494	54757494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GPR84	NM_020370	exon2	c.C142A	p.Q48K	TGGGCTGGATGGC	.	50	14	55	0	.	523	T	54757494	G	T	54757494	3	4	196	1	0	0	0	0	1	0	0	0	6714	1357	47	3	1052	3	GPR84	12	54757494	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		54757494	79094401	63	25887											
OR6C76	390326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55820492	55820492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OR6C76	NM_001005183	exon1	c.T455C	p.V152A	TCTTGGTAATTTT	.	96	29	83	1	.	68	C	55820492	T	C	55820492	3	2	196	1	0	0	0	0	1	0	0	0	11200	1638	57	2	457	2	OR6C76	12	55820492	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	1062998	55820492	78031403	64	25888											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62979151	62979151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	MON2	NM_015026	exon33	c.A4777T	p.N1593Y	TTCAGTAATAAAG	.	148	47	162	0	.	514	T	62979151	A	T	62979151	3	4	196	1	0	0	0	0	1	0	0	0	9700	362	13	4	4907	4	MON2	12	62979151	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	7158659	62979151	70872744	65	25889											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	72030765	72030766	+	Frame_Shift_Ins	INS	-	-	ATTA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZFC3H1	NM_144982	exon8	c.1800_1801insTAAT	p.P600fs	TGGTAATGGTGGT	.	136	23	91	0	.	138	ATTA	72030766	-	ATTA	72030765	7	5	196	1	0	1	1	0	0	0	0	0	17630	1451	51	0	4281	0	ZFC3H1	12	72030765	Frame_Shift_Ins	INS	-	TCGA-UB-A7MD-01A-12D-A34Z-10	9051614	72030765	61821130	66	25890											
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93236314	93236314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EEA1	NM_003566	exon10	c.A842T	p.Q281L	ACTTCCTGGGGGC	.	345	99	230	0	.	229	A	93236314	T	A	93236314	3	1	196	1	0	0	0	0	1	0	0	0	4921	1580	55	4	3473	4	EEA1	12	93236314	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	21205549	93236314	40615581	67	25891											
HCFC2	29915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104474603	104474604	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	HCFC2	NM_013320	exon5	c.762_763del	p.254_255del	TATAGGAAACAAG	.	94	33	102	0	.	92	-	104474604	AA	-	104474603	7	5	196	1	0	1	0	1	0	0	0	0	6993	233	9	0	780	0	HCFC2	12	104474603	Frame_Shift_Del	DEL	AA	TCGA-UB-A7MD-01A-12D-A34Z-10	11238289	104474603	29377292	68	25892											
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109283278	109283278	+	Missense_Mutation	SNP	C	C	T	rs201583577		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DAO	NM_001917	exon4	c.C343T	p.R115W	GGATTTCGGAAGC	.	49	9	48	0	.	92	T	109283278	C	T	109283278	3	4	196	1	0	0	0	0	1	0	0	0	4231	875	31	1	353	1	DAO	12	109283278	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	4808675	109283278	24568617	69	25893											
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99533811	99533811	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DOCK9	NM_015296	exon26	c.2748+1G>A	.	TACATACCTTAAC	.	52	15	53	0	.	90	T	99533811	C	T	99533811	5	4	196	1	0	0	0	0	0	0	1	0	4694	521	18	3	3649	3	DOCK9	13	99533811	Splice_Site	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		99533811	15636067	70	25894											
ABHD13	84945	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108882138	108882138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ABHD13	NM_032859	exon2	c.G572T	p.G191V	TTTTTGGCCGTTC	.	98	19	106	1	.	93	T	108882138	G	T	108882138	3	4	196	1	0	0	0	0	1	0	0	0	78	1203	42	3	574	3	ABHD13	13	108882138	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	9348327	108882138	6287740	71	25895											
ANKRD10	55608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111532383	111532383	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ANKRD10	NM_017664	exon6	c.C864G	p.S288S	GGTCGTGGAGGGG	.	64	22	82	0	.	226	C	111532383	G	C	111532383	2	2	196	1	0	0	0	0	0	0	0	1	638	1335	47	4		4	ANKRD10	13	111532383	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	2650245	111532383	3637495	72	25896											
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23495455	23495455	+	Missense_Mutation	SNP	T	T	C	rs60224002		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PSMB5	NM_002797	exon3	c.A635G	p.Y212C	AGATCATAGGCCT	.	60	14	79	0	T|0.998;C|0.002	91	C	23495455	T	C	23495455	3	2	196	1	0	0	0	0	1	0	0	0	12680	1406	49	2	160	2	PSMB5	14	23495455	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10		23495455	83854085	73	25897											
CHURC1	91612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65398907	65398907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CHURC1	NM_145165	exon4	c.A382G	p.I128V	ATCAGTATTCTCC	.	115	35	101	0	.	91	G	65398907	A	G	65398907	3	3	196	1	0	0	0	0	1	0	0	0	3417	449	16	2	315	2	CHURC1	14	65398907	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	41903452	65398907	41950633	74	25898											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42178394	42178394	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SPTBN5	NM_016642	exon7	c.C954T	p.T318T	CTCCTGGGTGCGG	.	69	19	60	0	.	91	A	42178394	G	A	42178394	2	1	196	1	0	0	0	0	0	0	0	1	15121	1219	43	3		3	SPTBN5	15	42178394	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		42178394	60352998	75	25899											
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42280320	42280320	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_001206670	exon16	c.G1758T	p.L586L	GGCATCCAGCAGG	.	32	14	41	0	.	.	A	42280320	C	A	42280320	2	1	196	1	0	0	0	0	0	0	0	1	12005	581	21	3		3	PLA2G4E	15	42280320	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	101926	42280320	60251072	76	25900											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48060868	48060868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SEMA6D	NM_153618	exon18	c.C1856A	p.T619K	AACTGACAAGCTC	.	61	15	62	0	.	138	A	48060868	C	A	48060868	3	1	196	1	0	0	0	0	1	0	0	0	14042	478	17	3	1965	3	SEMA6D	15	48060868	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	5780548	48060868	54470524	77	25901											
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57730466	57730466	+	Missense_Mutation	SNP	A	A	G	rs141997044	byfrequency	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CGNL1	NM_001252335	exon3	c.A269G	p.N90S	CCAGCAATGGTTC	.	76	11	88	0	A|1.000;G|0.000	100	G	57730466	A	G	57730466	3	3	196	1	0	0	0	0	1	0	0	0	3304	101	4	2	271	2	CGNL1	15	57730466	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	9669598	57730466	44800926	78	25902											
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83932654	83932654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	BNC1	NM_001717	exon4	c.G1349A	p.C450Y	GGCCTACAGTCTG	.	103	28	120	0	.	93	T	83932654	C	T	83932654	3	4	196	1	0	0	0	0	1	0	0	0	1474	478	17	3	1643	3	BNC1	15	83932654	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	26202188	83932654	18598738	79	25903											
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85664189	85664189	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PDE8A	NM_002605	exon18	c.G1896A	p.L632L	GGCCTTGGCCTTC	.	68	28	60	0	.	94	A	85664189	G	A	85664189	2	1	196	1	0	0	0	0	0	0	0	1	11653	1339	47	3		3	PDE8A	15	85664189	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	1731535	85664189	16867203	80	25904											
C16orf13	84326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	684899	684899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	C16orf13	NM_032366	exon4	c.C478T	p.L160F	ATCTGAGCATCAG	.	21	9	23	0	.	22	A	684899	G	A	684899	3	1	196	1	0	0	0	0	1	0	0	0	1811	971	34	3	219	3	C16orf13	16	684899	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		684899	89669854	81	25905											
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	709346	709346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	WDR90	NM_145294	exon26	c.G3154A	p.V1052I	CTGGGCGTCTGTG	.	50	13	92	0	.	92	A	709346	G	A	709346	3	1	196	1	0	0	0	0	1	0	0	0	17334	1145	40	1	3256	1	WDR90	16	709346	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	24447	709346	89645407	82	25906											
TPSD1	23430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1306673	1306673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TPSD1	NM_012217	exon2	c.C239T	p.A80V	CCGCGGCGCACTG	.	67	22	65	0	.	90	T	1306673	C	T	1306673	3	4	196	1	0	0	0	0	1	0	0	0	16422	768	27	1	245	1	TPSD1	16	1306673	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	597327	1306673	89048080	83	25907											
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1826218	1826218	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EME2	NM_001257370	exon8	c.C1119T	p.L373L	TGATCTCCTGCTG	.	39	14	35	0	.	229	T	1826218	C	T	1826218	2	4	196	1	0	0	0	0	0	0	0	1	5089	842	30	3		3	EME2	16	1826218	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	519545	1826218	88528535	84	25908											
TIGD7	91151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3350103	3350103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TIGD7	NM_033208	exon2	c.T512A	p.L171Q	TGAGCTAGACACA	.	157	54	136	0	.	90	T	3350103	A	T	3350103	3	4	196	1	0	0	0	0	1	0	0	0	15898	420	15	4	1141	4	TIGD7	16	3350103	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	1523885	3350103	87004650	85	25909											
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	3613898	3613898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NLRC3	NM_178844	exon5	c.C1040A	p.T347K	GGCCCCGTCCTGC	.	17	7	13	0	.	96	T	3613898	G	T	3613898	3	4	196	1	0	0	0	0	1	0	0	0	10468	1145	40	1	2222	1	NLRC3	16	3613898	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	263795	3613898	86740855	86	25910											
ZNF267	10308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31927163	31927163	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF267	NM_003414	exon4	c.T1593G	p.C531W	TACTTGTTTCTCA	.	56	14	52	0	.	138	G	31927163	T	G	31927163	3	3	196	1	0	0	0	0	1	0	0	0	17803	1731	60	5	1607	5	ZNF267	16	31927163	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	28313265	31927163	58427590	87	25911											
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57717987	57717987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GPR97	NM_170776	exon9	c.G1025T	p.G342V	CCCGGGGGGCTGT	.	66	19	57	0	.	91	T	57717987	G	T	57717987	3	4	196	1	0	0	0	0	1	0	0	0	6720	1232	43	3	1059	3	GPR97	16	57717987	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	25790824	57717987	32636766	88	25912											
CDH16	1014	ucsc.edu;mdanderson.org	37	16	66945111	66945111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CDH16	NM_004062	exon14	c.C1898T	p.T633M	AGCACCGTGTAGG	.	25	8	28	1	.	93	A	66945111	G	A	66945111	3	1	196	1	0	0	0	0	1	0	0	0	3101	1145	40	1	611	1	CDH16	16	66945111	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	9227124	66945111	23409642	89	25913											
FANCA	2175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89813065	89813065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FANCA	NM_000135	exon35	c.A3440T	p.D1147V	GAGGGGTCTCTGC	.	31	7	39	0	.	1130	A	89813065	T	A	89813065	3	1	196	1	0	0	0	0	1	0	0	0	5662	1667	58	4	963	4	FANCA	16	89813065	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	22867954	89813065	541688	90	25914											
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7137468	7137468	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DVL2	NM_004422	exon1	c.C114T	p.I38I	GAGGGTGATGCGC	.	38	12	78	0	.	659	A	7137468	G	A	7137468	2	1	196	1	0	0	0	0	0	0	0	1	4836	1280	45	3		3	DVL2	17	7137468	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		7137468	74057742	91	25915											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579591	7579591	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.97-1G>A	.	GGGGGACTGTAGA	.	30	9	30	0	.	70225	T	7579591	C	T	7579591	5	4	196	1	0	0	0	0	0	0	1	0	16378	579	20	3	1206	3	TP53	17	7579591	Splice_Site	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	442123	7579591	73615619	92	25916											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17721042	17721042	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SREBF1	NM_001005291	exon8	c.1462delG	p.E488fs	CAGGCTCCGAGTC	.	28	12	54	0	.	91	-	17721042	C	-	17721042	7	5	196	1	0	1	0	1	0	0	0	0	15140	864	30	0	2123	0	SREBF1	17	17721042	Frame_Shift_Del	DEL	C	TCGA-UB-A7MD-01A-12D-A34Z-10	10141451	17721042	63474168	93	25917											
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495177	33495177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	UNC45B	NM_001267052	exon10	c.C1249G	p.L417V	CAGCTGCTGGGAC	.	82	29	86	0	.	157	G	33495177	C	G	33495177	3	3	196	1	0	0	0	0	1	0	0	0	16986	796	28	4	1283	4	UNC45B	17	33495177	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	15774135	33495177	47700033	94	25918											
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40010438	40010438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	KLHL11	NM_018143	exon2	c.A1681G	p.T561A	ATGCTGTCTGATA	.	55	16	67	0	.	90	C	40010438	T	C	40010438	3	2	196	1	0	0	0	0	1	0	0	0	8367	1667	58	2	449	2	KLHL11	17	40010438	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	6515261	40010438	41184772	95	25919											
TMUB2	79089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42266396	42266396	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TMUB2	NM_001076674	exon3	c.C42T	p.D14D	CGTGGACCCTGCC	.	79	20	60	0	.	91	T	42266396	C	T	42266396	2	4	196	1	0	0	0	0	0	0	0	1	16262	506	18	3		3	TMUB2	17	42266396	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	2255958	42266396	38928814	96	25920											
TTLL6	284076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46878909	46878909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TTLL6	NM_001130918	exon4	c.T458A	p.V153E	TCCATCACCCGCT	.	68	29	96	0	.	90	T	46878909	A	T	46878909	3	4	196	1	0	0	0	0	1	0	0	0	16728	159	6	4	2346	4	TTLL6	17	46878909	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	4612513	46878909	34316301	97	25921											
UBE2Z	65264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46988176	46988176	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_023079	exon2	c.C324T	p.I108I	GGATATCATGTCC	.	78	20	67	0	.	.	T	46988176	C	T	46988176	2	4	196	1	0	0	0	0	0	0	0	1	16875	816	29	3		3	UBE2Z	17	46988176	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	109267	46988176	34207034	98	25922											
TTYH2	94015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72233606	72233606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TTYH2	NM_032646	exon4	c.G588T	p.M196I	CACCATGGAGCTG	.	36	12	41	0	.	138	T	72233606	G	T	72233606	3	4	196	1	0	0	0	0	1	0	0	0	16737	1348	47	3	602	3	TTYH2	17	72233606	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	25245430	72233606	8961604	99	25923											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73727379	73727379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ITGB4	NM_001005731	exon10	c.G1145A	p.R382Q	GCCTTCGGACAGA	.	37	14	37	0	.	227	A	73727379	G	A	73727379	3	1	196	1	0	0	0	0	1	0	0	0	7897	1116	39	1	1179	1	ITGB4	17	73727379	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	1493773	73727379	7467831	100	25924											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74290071	74290071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	QRICH2	NM_032134	exon4	c.A239T	p.H80L	CCTCCGTGCTTAG	.	29	12	42	0	.	94	A	74290071	T	A	74290071	3	1	196	1	0	0	0	0	1	0	0	0	12880	1696	59	4	4816	4	QRICH2	17	74290071	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	562692	74290071	6905139	101	25925											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76433836	76433836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNAH17	NM_173628	exon74	c.C11920A	p.P3974T	TCTCGGGGCTGGG	.	47	16	42	0	.	142	T	76433836	G	T	76433836	3	4	196	1	0	0	0	0	1	0	0	0	4601	1232	43	3	1500	3	DNAH17	17	76433836	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	2143765	76433836	4761374	102	25926											
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14764069	14764069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ANKRD30B	NM_001145029	exon7	c.C1205A	p.S402Y	AAACATCTACAAA	.	35	13	43	0	.	24	A	14764069	C	A	14764069	3	1	196	1	0	0	0	0	1	0	0	0	659	913	32	3	1231	3	ANKRD30B	18	14764069	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10		14764069	63313179	103	25927											
CHST9	83539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24496571	24496571	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CHST9	NM_031422	exon6	c.C984T	p.V328V	GAACTTGACTCCA	.	105	23	146	0	.	93	A	24496571	G	A	24496571	2	1	196	1	0	0	0	0	0	0	0	1	3411	1277	45	3		3	CHST9	18	24496571	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	9732502	24496571	53580677	104	25928											
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44560133	44560133	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TCEB3B	NM_016427	exon1	c.T1503A	p.A501A	GAAAGCAGCTTCC	.	60	14	52	0	.	156	T	44560133	A	T	44560133	2	4	196	1	0	0	0	0	0	0	0	1	15679	175	7	4		4	TCEB3B	18	44560133	Silent	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	20063562	44560133	33517115	105	25929											
CCDC11	220136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47788414	47788414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CCDC11	NM_145020	exon2	c.G245T	p.R82I	TTGATTCTTGCTC	.	122	45	148	0	.	93	A	47788414	C	A	47788414	3	1	196	1	0	0	0	0	1	0	0	0	2746	913	32	3	1327	3	CCDC11	18	47788414	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	3228281	47788414	30288834	106	25930											
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6681964	6681966	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	C3	NM_000064	exon35	c.4336_4338del	p.1446_1446del	CAGGTAGATGATG	.	51	15	67	0	.	95	-	6681966	GAT	-	6681964	7	5	196	1	0	1	0	1	0	0	0	0	2204	932	33	0	681	0	C3	19	6681964	In_Frame_Del	DEL	GAT	TCGA-UB-A7MD-01A-12D-A34Z-10		6681964	52447019	107	25931											
ECSIT	51295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11624014	11624014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ECSIT	NM_001142464	exon4	c.C595T	p.R199C	TCAGGCGCACCAA	.	48	16	35	0	.	91	A	11624014	G	A	11624014	3	1	196	1	0	0	0	0	1	0	0	0	4900	1087	38	1	720	1	ECSIT	19	11624014	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	4942050	11624014	47504969	108	25932											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53304474	53304474	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF28	NM_006969	exon4	c.A624T	p.V208V	CATGTGTACATTC	.	66	22	64	0	.	91	A	53304474	T	A	53304474	2	1	196	1	0	0	0	0	0	0	0	1	17810	1625	57	4		4	ZNF28	19	53304474	Silent	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10	41680460	53304474	5824509	109	25933											
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53612425	53612425	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF415	NM_018355	exon4	c.G873A	p.R291R	AACTCTCCGATGT	.	65	19	58	0	.	91	T	53612425	C	T	53612425	2	4	196	1	0	0	0	0	0	0	0	1	17889	842	30	3		3	ZNF415	19	53612425	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	307951	53612425	5516558	110	25934											
PEG3	5178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57325652	57325652	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PEG3	NM_001146184	exon9	c.G4158A	p.R1386R	CTGAATCCTCAGA	.	65	19	72	2	.	164	T	57325652	C	T	57325652	2	4	196	1	0	0	0	0	0	0	0	1	11720	854	30	3		3	PEG3	19	57325652	Silent	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	3713227	57325652	1803331	111	25935											
POLR3F	10621	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	18464200	18464200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	POLR3F	NM_006466	exon9	c.T949C	p.X317Q	GAATTTTAATAGA	.	36	8	36	0	.	90	C	18464200	T	C	18464200	3	2	196	1	0	0	0	0	1	0	0	0	12233	1767	61	2	983	2	POLR3F	20	18464200	Missense_Mutation	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10		18464200	44561320	112	25936											
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44592256	44592256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF335	NM_022095	exon9	c.G1389T	p.R463S	GAAGGGCCTCAAA	.	58	18	78	0	.	94	A	44592256	C	A	44592256	3	1	196	1	0	0	0	0	1	0	0	0	17849	738	26	3	2719	3	ZNF335	20	44592256	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	26128056	44592256	18433264	113	25937											
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46365635	46365635	+	Missense_Mutation	SNP	G	G	A	rs201248076		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SULF2	NM_001161841	exon3	c.C227T	p.A76V	AAGTGCGCCCCGC	.	104	27	98	0	G|0.999;A|0.000	293	A	46365635	G	A	46365635	3	1	196	1	0	0	0	0	1	0	0	0	15370	1087	38	1	2461	1	SULF2	20	46365635	Missense_Mutation	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10	1773379	46365635	16659885	114	25938											
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892516	22892516	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PRAME	NM_206954	exon5	c.C585T	p.L195L	CTCAATGAGGTAG	.	70	18	57	0	.	515	A	22892516	G	A	22892516	2	1	196	1	0	0	0	0	0	0	0	1	12424	1277	45	3		3	PRAME	22	22892516	Silent	SNP	G	TCGA-UB-A7MD-01A-12D-A34Z-10		22892516	28412050	115	25939											
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37540187	37540187	+	Missense_Mutation	SNP	C	C	T	rs147593802		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	IL2RB	NM_000878	exon2	c.G26A	p.R9H	GGCAGACGCCAGG	.	41	8	52	0	C|1.000;T|0.000	90	T	37540187	C	T	37540187	3	4	196	1	0	0	0	0	1	0	0	0	7687	536	19	1	1665	1	IL2RB	22	37540187	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	14647671	37540187	13764379	116	25940											
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23731290	23731290	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ACOT9	NM_001037171	exon9	c.A624G	p.A208A	AAATGTTGCATCC	.	189	131	145	0	.	133	C	23731290	T	C	23731290	2	2	196	1	0	0	0	0	0	0	0	1	157	1799	63	2		2	ACOT9	23	23731290	Silent	SNP	T	TCGA-UB-A7MD-01A-12D-A34Z-10		23731290	131539270	117	25941											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148037267	148037267	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	AFF2	NM_002025	exon11	c.A1692T	p.Q564H	CATCCAACCAATG	.	71	37	58	0	.	135	T	148037267	A	T	148037267	3	4	196	1	0	0	0	0	1	0	0	0	357	40	2	4	1789	4	AFF2	23	148037267	Missense_Mutation	SNP	A	TCGA-UB-A7MD-01A-12D-A34Z-10	124305977	148037267	7233293	118	25942											
PASD1	139135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150842573	150842573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PASD1	NM_173493	exon15	c.C2090G	p.S697C	AGTTGTCTGATTC	.	47	29	69	0	.	133	G	150842573	C	G	150842573	3	3	196	1	0	0	0	0	1	0	0	0	11471	913	32	4	2144	4	PASD1	23	150842573	Missense_Mutation	SNP	C	TCGA-UB-A7MD-01A-12D-A34Z-10	2805306	150842573	4427987	119	25943											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22021689	22021689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP48	NM_032236	exon23	c.2753delA	p.K918fs	GATATCTTTTGCC	.	56	16	50	0	.	659	-	22021689	T	-	22021689	7	5	197	1	0	1	0	1	0	0	0	0	17076	1609	56	0	374	0	USP48	1	22021689	Frame_Shift_Del	DEL	T	TCGA-UB-A7ME-01A-11D-A33K-10		22021689	227228932	1	25944											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27094294	27094294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARID1A	NM_006015	exon11	c.C3002G	p.S1001C	GTTCTTCTACTAC	.	69	33	76	0	.	584	G	27094294	C	G	27094294	3	3	197	1	0	0	0	0	1	0	0	0	913	913	32	4	3044	4	ARID1A	1	27094294	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	5072605	27094294	222156327	2	25945											
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43687775	43687775	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	WDR65	NM_001195831	exon15	c.2342-1G>A	.	TCTCCAGAATGTT	.	182	34	192	0	.	91	A	43687775	G	A	43687775	5	1	197	1	0	0	0	0	0	0	1	0	17313	957	33	3		3	WDR65	1	43687775	Splice_Site	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	16593481	43687775	205562846	3	25946											
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46746117	46746117	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LRRC41	NM_006369	exon6	c.C1872T	p.A624A	AAAGGTGGCACTA	.	308	65	309	0	.	156	A	46746117	G	A	46746117	2	1	197	1	0	0	0	0	0	0	0	1	8999	1335	47	3		3	LRRC41	1	46746117	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	3058342	46746117	202504504	4	25947											
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	92946582	92946582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GFI1	NM_005263	exon4	c.C362T	p.P121L	GAGTACGGTTTGA	.	152	29	164	0	.	514	A	92946582	G	A	92946582	3	1	197	1	0	0	0	0	1	0	0	0	6339	1116	39	1	922	1	GFI1	1	92946582	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	46200465	92946582	156304039	5	25948											
SLC6A17	388662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	110714799	110714799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC6A17	NM_001010898	exon3	c.T404A	p.I135K	ACTATATATGTCC	.	25	4	45	0	.	92	A	110714799	T	A	110714799	3	1	197	1	0	0	0	0	1	0	0	0	14680	1406	49	4	410	4	SLC6A17	1	110714799	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	17768217	110714799	138535822	6	25949											
ARNT	405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150788840	150788840	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARNT	NM_001668	exon19	c.A1845T	p.S615S	AGAAGCTGATGGC	.	124	21	66	0	.	1085	A	150788840	T	A	150788840	2	1	197	1	0	0	0	0	0	0	0	1	965	1567	55	4		4	ARNT	1	150788840	Silent	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	40074041	150788840	98461781	7	25950											
FLG	2312	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	152276112	152276112	+	Silent	SNP	C	C	T	rs201725426		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FLG	NM_002016	exon3	c.G11250A	p.A3750A	TTGGGACGCTGAG	.	238	26	143	0	C|0.999;T|0.001	106	T	152276112	C	T	152276112	2	4	197	1	0	0	0	0	0	0	0	1	5922	523	19	1		1	FLG	1	152276112	Silent	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	1487272	152276112	96974509	8	25951											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152278842	152278842	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FLG	NM_002016	exon3	c.A8520T	p.T2840T	ACGTGTTGTTCTG	.	350	80	187	0	.	106	A	152278842	T	A	152278842	2	1	197	1	0	0	0	0	0	0	0	1	5922	1799	63	4		4	FLG	1	152278842	Silent	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	2730	152278842	96971779	9	25952											
PRG4	10216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	186276282	186276283	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	p.T478A	ACCCACCACTCCC	.	89	18	46	0	.	.	TG	186276283	CA	TG	186276282	3	4	197	1	0	0	0	0	1	0	0	0	12481	581	21	3	1453	3	PRG4	1	186276282	Missense_Mutation	DNP	CA	TCGA-UB-A7ME-01A-11D-A33K-10	33997440	186276282	62974339	10	25953											
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237872824	237872824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RYR2	NM_001035	exon70	c.T10187G	p.F3396C	AGCTCTTCCGCAT	.	159	68	79	1	.	158	G	237872824	T	G	237872824	3	3	197	1	0	0	0	0	1	0	0	0	13769	1783	62	5	10465	5	RYR2	1	237872824	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	51596542	237872824	11377797	11	25954											
SH3YL1	26751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234273	234273	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SH3YL1	NM_001159597	exon6	c.292-1G>A	.	TGATACCTAAAGT	.	83	17	63	0	.	91	T	234273	C	T	234273	5	4	197	1	0	0	0	0	0	0	1	0	14263	695	24	3	761	3	SH3YL1	2	234273	Splice_Site	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10		234273	242965100	12	25955											
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88396229	88396229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SMYD1	NM_198274	exon6	c.T814A	p.F272I	TACTACTTTGACT	.	119	20	132	0	.	229	A	88396229	T	A	88396229	3	1	197	1	0	0	0	0	1	0	0	0	14821	1609	56	4	836	4	SMYD1	2	88396229	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	88161956	88396229	154803144	13	25956											
RAB3GAP1	22930	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	135878431	135878431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RAB3GAP1	NM_001172435	exon8	c.C691T	p.R231X	GCTATTCGATTTA	.	139	26	107	1	.	92	T	135878431	C	T	135878431	4	4	197	1	0	0	0	0	0	1	0	0	12935	876	31	1	721	1	RAB3GAP1	2	135878431	Nonsense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	47482202	135878431	107320942	14	25957											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168103964	168103964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	XIRP2	NM_152381	exon9	c.C6062A	p.A2021D	CAAAAGCCCCCAA	.	287	48	204	0	.	104	A	168103964	C	A	168103964	3	1	197	1	0	0	0	0	1	0	0	0	17427	739	26	3	6092	3	XIRP2	2	168103964	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	32225533	168103964	75095409	15	25958											
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207655393	207655393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FASTKD2	NM_001136193	exon11	c.G1996T	p.G666C	GCAATGGGTTTTC	.	65	13	53	0	.	118	T	207655393	G	T	207655393	3	4	197	1	0	0	0	0	1	0	0	0	5686	1232	43	3	2034	3	FASTKD2	2	207655393	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	39551429	207655393	35543980	16	25959											
CXCR2	3579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218999787	218999787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CXCR2	NM_001168298	exon4	c.T263A	p.L88Q	ACCTGCTGAACCT	.	190	76	188	0	.	658	A	218999787	T	A	218999787	3	1	197	1	0	0	0	0	1	0	0	0	4091	1580	55	4	265	4	CXCR2	2	218999787	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	11344394	218999787	24199586	17	25960											
CYP8B1	1582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42916188	42916188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CYP8B1	NM_004391	exon1	c.A1121G	p.Y374C	AACAGATACTCCT	.	144	16	127	0	.	92	C	42916188	T	C	42916188	3	2	197	1	0	0	0	0	1	0	0	0	4198	1406	49	2	388	2	CYP8B1	3	42916188	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10		42916188	155106242	18	25961											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112357309	112357309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CCDC80	NM_199511	exon2	c.C1444T	p.P482S	GACCTGGCACCAC	.	66	22	67	0	.	92	A	112357309	G	A	112357309	3	1	197	1	0	0	0	0	1	0	0	0	2854	1203	42	3	1436	3	CCDC80	3	112357309	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	69441121	112357309	85665121	19	25962											
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141535712	141535712	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GRK7	NM_139209	exon4	c.G1482T	p.G494G	TCGGGGGGTGGAA	.	101	22	98	0	.	522	T	141535712	G	T	141535712	2	4	197	1	0	0	0	0	0	0	0	1	6794	1219	43	3		3	GRK7	3	141535712	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	29178403	141535712	56486718	20	25963											
NLGN1	22871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173996849	173996849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NLGN1	NM_014932	exon6	c.A1058T	p.H353L	GATACCACATAGC	.	181	43	155	1	.	231	T	173996849	A	T	173996849	3	4	197	1	0	0	0	0	1	0	0	0	10461	159	6	4	1072	4	NLGN1	3	173996849	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	32461137	173996849	24025581	21	25964											
MED28	80306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17625401	17625401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MED28	NM_025205	exon4	c.G517T	p.A173S	ATCCCTGCACCTC	.	171	57	265	0	.	90	T	17625401	G	T	17625401	3	4	197	1	0	0	0	0	1	0	0	0	9446	1319	46	3	531	3	MED28	4	17625401	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10		17625401	173528875	22	25965											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57179476	57179476	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KIAA1211	NM_020722	exon7	c.C468A	p.A156A	CAGTGCCGCCAAG	.	71	15	84	0	.	70	A	57179476	C	A	57179476	2	1	197	1	0	0	0	0	0	0	0	1	8215	639	23	1		1	KIAA1211	4	57179476	Silent	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	39554075	57179476	133974800	23	25966											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57219583	57219583	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	AASDH	NM_181806	exon9	c.A1563G	p.P521P	TGTAAATGGTAGA	.	66	16	104	0	.	94	C	57219583	T	C	57219583	2	2	197	1	0	0	0	0	0	0	0	1	22	1451	51	2		2	AASDH	4	57219583	Silent	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	40107	57219583	133934693	24	25967											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71656987	71656987	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RUFY3	NM_014961	exon13	c.A1383T	p.A461A	TGCAGCAAATAAA	.	501	108	580	1	.	90	T	71656987	A	T	71656987	2	4	197	1	0	0	0	0	0	0	0	1	13740	117	5	4		4	RUFY3	4	71656987	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	14437404	71656987	119497289	25	25968											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104084644	104084644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CENPE	NM_001813	exon17	c.G1714T	p.D572Y	CAAGATCTTGATT	.	327	77	319	0	.	277	A	104084644	C	A	104084644	3	1	197	1	0	0	0	0	1	0	0	0	3230	913	32	3	6523	3	CENPE	4	104084644	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	32427657	104084644	87069632	26	25969											
BBS12	166379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123664496	123664496	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BBS12	NM_001178007	exon3	c.T1449C	p.D483D	TGTAGATAGGAAC	.	54	15	108	0	.	92	C	123664496	T	C	123664496	2	2	197	1	0	0	0	0	0	0	0	1	1337	1403	49	2		2	BBS12	4	123664496	Silent	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	19579852	123664496	67489780	27	25970											
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96503531	96503531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RIOK2	NM_001159749	exon8	c.A1037G	p.E346G	TAAACCTCTGCTT	.	89	14	108	0	.	419	C	96503531	T	C	96503531	3	2	197	1	0	0	0	0	1	0	0	0	13378	1551	54	2	661	2	RIOK2	5	96503531	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10		96503531	84411729	28	25971											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562737	140562737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PCDHB16	NM_020957	exon1	c.T603A	p.D201E	GCTGGATCGGGAG	.	80	25	78	0	.	92	A	140562737	T	A	140562737	3	1	197	1	0	0	0	0	1	0	0	0	11541	1432	50	4	605	4	PCDHB16	5	140562737	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	44059206	140562737	40352523	29	25972											
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148388485	148388485	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SH3TC2	NM_024577	exon15	c.A3407T	p.Q1136L	CTAATCTGCAGCT	.	153	61	131	0	.	92	A	148388485	T	A	148388485	3	1	197	1	0	0	0	0	1	0	0	0	14262	1580	55	4	471	4	SH3TC2	5	148388485	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	7825748	148388485	32526775	30	25973											
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159776435	159776435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C1QTNF2	NM_031908	exon3	c.G733A	p.D245N	TGATGTCGTAGGT	.	77	19	67	0	.	91	T	159776435	C	T	159776435	3	4	197	1	0	0	0	0	1	0	0	0	1963	884	31	1	263	1	C1QTNF2	5	159776435	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	11387950	159776435	21138825	31	25974											
FGF18	8817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170876191	170876191	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FGF18	NM_003862	exon4	c.C291T	p.V97V	TCAAGTCCGGATC	.	136	24	147	0	.	522	T	170876191	C	T	170876191	2	4	197	1	0	0	0	0	0	0	0	1	5846	842	30	3		3	FGF18	5	170876191	Silent	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	11099756	170876191	10039069	32	25975											
CAGE1	285782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7334305	7334305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CAGE1	NM_001170692	exon12	c.A2388T	p.K796N	TAAATGTTTATTT	.	76	32	49	0	.	22	A	7334305	T	A	7334305	3	1	197	1	0	0	0	0	1	0	0	0	2572	1722	60	4	249	4	CAGE1	6	7334305	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10		7334305	163780762	33	25976											
BMP5	653	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55620351	55620351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BMP5	NM_021073	exon7	c.C1345T	p.R449C	ATGAGCGTACTAC	.	430	142	327	2	.	516	A	55620351	G	A	55620351	3	1	197	1	0	0	0	0	1	0	0	0	1463	1145	40	1	23	1	BMP5	6	55620351	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	48286046	55620351	115494716	34	25977											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	65707540	65707540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	EYS	NM_001142800	exon14	c.C2194T	p.Q732X	TGTCCTGTTCACA	.	557	54	244	0	.	660	A	65707540	G	A	65707540	4	1	197	1	0	0	0	0	0	1	0	0	5332	1386	48	3	7205	3	EYS	6	65707540	Nonsense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	10087189	65707540	105407527	35	25978											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90573432	90573432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CASP8AP2	NM_001137667	exon7	c.G2004T	p.M668I	TACTATGCATTGT	.	89	30	93	0	.	24	T	90573432	G	T	90573432	3	4	197	1	0	0	0	0	1	0	0	0	2678	1319	46	3	2026	3	CASP8AP2	6	90573432	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	24865892	90573432	80541635	36	25979											
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126196071	126196071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NCOA7	NM_001199619	exon5	c.A308C	p.K103T	AAGAGAAGAAGAT	.	118	29	128	0	.	227	C	126196071	A	C	126196071	3	2	197	1	0	0	0	0	1	0	0	0	10234	72	3	5	318	5	NCOA7	6	126196071	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	35622639	126196071	44918996	37	25980											
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134892	128134892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	THEMIS	NM_001010923	exon4	c.A894T	p.Q298H	AATGCTTTGGGGC	.	103	24	120	0	.	94	A	128134892	T	A	128134892	3	1	197	1	0	0	0	0	1	0	0	0	15857	1838	64	4	1164	4	THEMIS	6	128134892	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	1938821	128134892	42980175	38	25981											
OSBPL3	26031	ucsc.edu;bcgsc.ca	37	7	24881964	24881964	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OSBPL3	NM_015550	exon13	c.T1335A	p.T445T	GGAGTCAGTGATG	.	182	57	142	2	.	204	T	24881964	A	T	24881964	2	4	197	1	0	0	0	0	0	0	0	1	11279	175	7	4		4	OSBPL3	7	24881964	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10		24881964	134256699	39	25982											
SRCRB4D	136853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76023205	76023205	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SRCRB4D	NM_080744	exon8	c.C963G	p.P321P	AGGCTGGGGGCCA	.	205	37	117	0	.	91	C	76023205	G	C	76023205	2	2	197	1	0	0	0	0	0	0	0	1	15136	1219	43	4		4	SRCRB4D	7	76023205	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	51141241	76023205	83115458	40	25983											
TCEA1	6917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54882968	54882968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TCEA1	NM_006756	exon9	c.G881A	p.C294Y	TTTCCACATTCAT	.	397	56	236	0	.	661	T	54882968	C	T	54882968	3	4	197	1	0	0	0	0	1	0	0	0	15664	478	17	3	32	3	TCEA1	8	54882968	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10		54882968	91481054	41	25984											
RP1	6101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55534080	55534080	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RP1	NM_006269	exon2	c.A554T	p.Q185L	TTCTACAGCACCT	.	198	107	140	1	.	102	T	55534080	A	T	55534080	3	4	197	1	0	0	0	0	1	0	0	0	13532	188	7	4	556	4	RP1	8	55534080	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	651112	55534080	90829942	42	25985											
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	92330525	92330525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC26A7	NM_134266	exon5	c.G559T	p.A187S	GGGGCTGCCACCC	.	176	22	74	0	.	92	T	92330525	G	T	92330525	3	4	197	1	0	0	0	0	1	0	0	0	14522	1319	46	3	573	3	SLC26A7	8	92330525	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	36796445	92330525	54033497	43	25986											
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104927768	104927768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RIMS2	NM_001100117	exon7	c.A1858G	p.I620V	GCATTTATTACTA	.	151	81	85	1	.	279	G	104927768	A	G	104927768	3	3	197	1	0	0	0	0	1	0	0	0	13368	449	16	2	2010	2	RIMS2	8	104927768	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	12597243	104927768	41436254	44	25987											
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86616085	86616085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RMI1	NM_024945	exon3	c.A184T	p.R62W	GATCTGAGGGATT	.	123	37	146	0	.	90	T	86616085	A	T	86616085	3	4	197	1	0	0	0	0	1	0	0	0	13395	295	11	4	186	4	RMI1	9	86616085	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10		86616085	54597346	45	25988											
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125141054	125141054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PTGS1	NM_000962	exon5	c.T353G	p.V118G	CTGCAGTGCGCTC	.	107	15	116	0	.	228	G	125141054	T	G	125141054	3	3	197	1	0	0	0	0	1	0	0	0	12755	1710	59	5	371	5	PTGS1	9	125141054	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	38524969	125141054	16072377	46	25989											
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131296078	131296078	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GLE1	NM_001499	exon11	c.A1494T	p.A498A	TGAAGCAGCATTC	.	120	49	131	0	.	22	T	131296078	A	T	131296078	2	4	197	1	0	0	0	0	0	0	0	1	6435	175	7	4		4	GLE1	9	131296078	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	6155024	131296078	9917353	47	25990											
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140086995	140086995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TPRN	NM_001128228	exon2	c.C1874T	p.S625L	TCCTCTGAGCCGG	.	59	6	65	0	.	90	A	140086995	G	A	140086995	3	1	197	1	0	0	0	0	1	0	0	0	16418	1294	45	3	353	3	TPRN	9	140086995	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	8790917	140086995	1126436	48	25991											
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5945116	5945116	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FBXO18	NM_032807	exon3	c.G288C	p.P96P	TAAACCGAGAACA	.	114	37	76	0	.	228	C	5945116	G	C	5945116	2	2	197	1	0	0	0	0	0	0	0	1	5731	1045	37	4		4	FBXO18	10	5945116	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10		5945116	129589631	49	25992											
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71692351	71692351	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	COL13A1	NM_001130103	exon30	c.A1686T	p.P562P	CAATCCAGGAGCA	.	91	20	86	0	.	91	T	71692351	A	T	71692351	2	4	197	1	0	0	0	0	0	0	0	1	3670	175	7	4		4	COL13A1	10	71692351	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	65747235	71692351	63842396	50	25993											
PNLIPRP3	119548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118202641	118202641	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PNLIPRP3	NM_001011709	exon3	c.A279T	p.I93I	CAACATAGCTGGA	.	88	15	90	0	.	91	T	118202641	A	T	118202641	2	4	197	1	0	0	0	0	0	0	0	1	12152	410	15	4		4	PNLIPRP3	10	118202641	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	46510290	118202641	17332106	51	25994											
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	3661593	3661593	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ART5	NM_001079536	exon3	c.T66A	p.A22A	GGGAACAGCCTGG	.	52	27	33	0	.	91	T	3661593	A	T	3661593	2	4	197	1	0	0	0	0	0	0	0	1	1000	175	7	4		4	ART5	11	3661593	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10		3661593	131344923	52	25995											
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61026465	61026465	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	VWCE	NM_152718	exon20	c.C2550G	p.T850T	TGGAGGGGTCGAA	.	50	18	49	0	.	91	C	61026465	G	C	61026465	2	2	197	1	0	0	0	0	0	0	0	1	17242	1219	43	4		4	VWCE	11	61026465	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	57364872	61026465	73980051	53	25996											
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75115172	75115172	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RPS3	NM_001260506	exon5	c.G507A	p.V169V	GTTTGTGGATGGC	.	177	19	98	0	.	90	A	75115172	G	A	75115172	2	1	197	1	0	0	0	0	0	0	0	1	13643	1335	47	3		3	RPS3	11	75115172	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	14088707	75115172	59891344	54	25997											
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8807070	8807070	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MFAP5	NM_003480	exon6	c.T180A	p.A60A	CAAAACAGCCAAA	.	197	63	168	0	.	577	T	8807070	A	T	8807070	2	4	197	1	0	0	0	0	0	0	0	1	9518	175	7	4		4	MFAP5	12	8807070	Silent	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10		8807070	125044825	55	25998											
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20792858	20792858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PDE3A	NM_000921	exon10	c.C2218A	p.H740N	TATTTTCATGCTT	.	91	17	64	0	.	94	A	20792858	C	A	20792858	3	1	197	1	0	0	0	0	1	0	0	0	11637	826	29	3	2256	3	PDE3A	12	20792858	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	11985788	20792858	113059037	56	25999											
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46633498	46633498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC38A1	NM_030674	exon3	c.A86G	p.N29S	AAATCATTGGAGT	.	108	20	96	0	.	518	C	46633498	T	C	46633498	3	2	197	1	0	0	0	0	1	0	0	0	14601	1493	52	2	1437	2	SLC38A1	12	46633498	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	25840640	46633498	87218397	57	26000											
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53879187	53879187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAP3K12	NM_001193511	exon5	c.C894A	p.S298R	CTTGGTGCTCTTG	.	97	38	74	0	.	604	T	53879187	G	T	53879187	3	4	197	1	0	0	0	0	1	0	0	0	9246	1310	46	3	1824	3	MAP3K12	12	53879187	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	7245689	53879187	79972708	58	26001											
G2E3	55632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31077159	31077159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	G2E3	NM_017769	exon12	c.C1384T	p.P462S	GGTGGTCCTTCAC	.	178	19	89	0	.	660	T	31077159	C	T	31077159	3	4	197	1	0	0	0	0	1	0	0	0	6140	855	30	3	1426	3	G2E3	14	31077159	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10		31077159	76272381	59	26002											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95557445	95557445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DICER1	NM_030621	exon27	c.A5529T	p.E1843D	AAACTTTTCTGCA	.	124	27	103	0	.	961	A	95557445	T	A	95557445	3	1	197	1	0	0	0	0	1	0	0	0	4521	1855	64	4	247	4	DICER1	14	95557445	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	64480286	95557445	11792095	60	26003											
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	99641808	99641808	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BCL11B	NM_138576	exon4	c.C1365G	p.Y455X	GCACTTGTAGGGC	.	44	5	47	0	.	1147	C	99641808	G	C	99641808	4	2	197	1	0	0	0	0	0	1	0	0	1364	1372	48	4	1323	4	BCL11B	14	99641808	Nonsense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	4084363	99641808	7707732	61	26004											
AQR	9716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	35149307	35149307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	AQR	NM_014691	exon35	c.A4144T	p.T1382S	ATAAAGTCTAATT	.	44	15	47	0	.	135	A	35149307	T	A	35149307	3	1	197	1	0	0	0	0	1	0	0	0	835	1681	58	4	317	4	AQR	15	35149307	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10		35149307	67382085	62	26005											
MAPK6	5597	ucsc.edu;bcgsc.ca	37	15	52342222	52342222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAPK6	NM_002748	exon3	c.G588T	p.W196C	TAAATGGTACAGA	.	37	4	33	0	.	1403	T	52342222	G	T	52342222	3	4	197	1	0	0	0	0	1	0	0	0	9281	1270	44	3	594	3	MAPK6	15	52342222	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	17192915	52342222	50189170	63	26006											
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99023922	99023922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_182562	exon4	c.G91A	p.D31N	ACATGTCATCATC	.	137	24	116	0	.	.	T	99023922	C	T	99023922	3	4	197	1	0	0	0	0	1	0	0	0	5488	826	29	3	503	3	FAM169B	15	99023922	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	46681700	99023922	3507470	64	26007											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2812757	2812757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SRRM2	NM_016333	exon11	c.C2228T	p.S743F	GCAGGTCCAATTC	.	103	25	92	0	.	93	T	2812757	C	T	2812757	3	4	197	1	0	0	0	0	1	0	0	0	15168	855	30	3	2266	3	SRRM2	16	2812757	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10		2812757	87541996	65	26008											
PMFBP1	83449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72198720	72198720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PMFBP1	NM_031293	exon3	c.G108T	p.Q36H	CTTCCTCTGTCTC	.	62	8	50	0	.	92	A	72198720	C	A	72198720	3	1	197	1	0	0	0	0	1	0	0	0	12134	912	32	3	3051	3	PMFBP1	16	72198720	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	69385963	72198720	18156033	66	26009											
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	8216406	8216417	+	In_Frame_Del	DEL	CGGTCACCCTGC	CGGTCACCCTGC	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	CGGTCACCCTGC	CGGTCACCCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARHGEF15	NM_025014	exon3	c.768_779del	p.256_260del	AAGCATCGGTCAC	.	33	11	58	0	.	230	-	8216417	CGGTCACCCTGC	-	8216406	7	5	197	1	0	1	0	1	0	0	0	0	898	874	31	0	774	0	ARHGEF15	17	8216406	In_Frame_Del	DEL	CGGTCACCCTGC	TCGA-UB-A7ME-01A-11D-A33K-10		8216406	72978804	67	26010											
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987890	61987890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CSHL1	NM_022579	exon3	c.T196A	p.Y66N	TGATATAGGCTTC	.	97	44	94	0	.	90	T	61987890	A	T	61987890	3	4	197	1	0	0	0	0	1	0	0	0	3942	420	15	4	484	4	CSHL1	17	61987890	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	53771484	61987890	19207320	68	26011											
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC25A19	NM_001126122	exon6	c.C658G	p.L220V	AAAGCAGGTTTTG	.	59	20	66	0	.	91	C	73273550	G	C	73273550	3	2	197	1	0	0	0	0	1	0	0	0	14481	991	35	4	312	4	SLC25A19	17	73273550	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	11285660	73273550	7921660	69	26012											
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	75186883	75186883	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SEC14L1	NM_001204408	exon6	c.64-2A>T	.	ATTTATAGGCCTA	.	39	12	41	0	.	92	T	75186883	A	T	75186883	5	4	197	1	0	0	0	0	0	0	1	0	13981	434	15	4	68	4	SEC14L1	17	75186883	Splice_Site	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	1913333	75186883	6008327	70	26013											
PCYT2	5833	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79865686	79865686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PCYT2	NM_002861	exon5	c.G455T	p.R152L	AGCATGCGGCCCA	.	54	8	55	0	.	68	A	79865686	C	A	79865686	3	1	197	1	0	0	0	0	1	0	0	0	11612	768	27	1	808	1	PCYT2	17	79865686	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	4678803	79865686	1329524	71	26014											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80039126	80039126	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FASN	NM_004104	exon38	c.6509delT	p.L2170fs	AGGTTGAGCTCAC	.	48	15	46	0	.	90	-	80039126	A	-	80039126	7	5	197	1	0	1	0	1	0	0	0	0	5683	304	11	0	1050	0	FASN	17	80039126	Frame_Shift_Del	DEL	A	TCGA-UB-A7ME-01A-11D-A33K-10	173440	80039126	1156084	72	26015											
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61323009	61323009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB3	NM_006919	exon8	c.T1055A	p.F352Y	GATCCGAATCCTA	.	128	58	137	0	.	228	T	61323009	A	T	61323009	3	4	197	1	0	0	0	0	1	0	0	0	14102	246	9	4	121	4	SERPINB3	18	61323009	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10		61323009	16754239	73	26016											
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61323101	61323101	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB3	NM_006919	exon8	c.C963T	p.R321R	GAGACCGCGGCTC	.	133	32	109	0	.	228	A	61323101	G	A	61323101	2	1	197	1	0	0	0	0	0	0	0	1	14102	1074	38	1		1	SERPINB3	18	61323101	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	92	61323101	16754147	74	26017											
SERPINB10	5273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61584734	61584734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB10	NM_005024	exon2	c.A213C	p.E71D	CCCTGAAAGTGAA	.	304	107	238	0	.	227	C	61584734	A	C	61584734	3	2	197	1	0	0	0	0	1	0	0	0	14097	11	1	5	219	5	SERPINB10	18	61584734	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	261633	61584734	16492514	75	26018											
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	968403	968403	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARID3A	NM_005224	exon8	c.1496-2A>T	.	TCCCACAGCCTCC	.	152	56	153	0	.	90	T	968403	A	T	968403	5	4	197	1	0	0	0	0	0	0	1	0	916	202	7	4	1520	4	ARID3A	19	968403	Splice_Site	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10		968403	58160580	76	26019											
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2435009	2435009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LMNB2	NM_032737	exon5	c.A845T	p.Y282F	GCCTGGTAGGTCT	.	15	5	17	0	.	290	A	2435009	T	A	2435009	3	1	197	1	0	0	0	0	1	0	0	0	8850	1638	57	4	1049	4	LMNB2	19	2435009	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	1466606	2435009	56693974	77	26020											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085994	9085994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MUC16	NM_024690	exon1	c.A5821T	p.I1941F	CTGGAATGGATGA	.	69	35	60	0	.	566	A	9085994	T	A	9085994	3	1	197	1	0	0	0	0	1	0	0	0	9973	1464	51	4	38038	4	MUC16	19	9085994	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	6650985	9085994	50042989	78	26021											
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19823308	19823308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF14	NM_021030	exon4	c.G782A	p.S261N	GGACAACTGAAAG	.	109	26	66	0	.	517	T	19823308	C	T	19823308	3	4	197	1	0	0	0	0	1	0	0	0	17725	565	20	3	1150	3	ZNF14	19	19823308	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	10737314	19823308	39305675	79	26022											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31039817	31039817	+	Silent	SNP	C	C	T	rs202189721		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF536	NM_014717	exon4	c.C3291T	p.T1097T	ATGGACCGGCCAC	.	108	18	77	0	C|0.999;T|0.001	144	T	31039817	C	T	31039817	2	4	197	1	0	0	0	0	0	0	0	1	17971	639	23	1		1	ZNF536	19	31039817	Silent	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	11216509	31039817	28089166	80	26023											
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37734528	37734528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF383	NM_152604	exon5	c.G1390C	p.D464H	GGCTCGGATCTCA	.	127	18	104	0	.	92	C	37734528	G	C	37734528	3	2	197	1	0	0	0	0	1	0	0	0	17871	1174	41	4	1404	4	ZNF383	19	37734528	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	6694711	37734528	21394455	81	26024											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38945876	38945876	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RYR1	NM_001042723	exon14	c.G1442C	p.G481A	CCTAGGGGATGCT	.	67	25	91	0	.	100	C	38945876	G	C	38945876	3	2	197	1	0	0	0	0	1	0	0	0	13768	1246	43	4	1496	4	RYR1	19	38945876	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	1211348	38945876	20183107	82	26025											
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41021261	41021261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SPTBN4	NM_020971	exon15	c.G2809A	p.V937I	GGCCGCGTTCTGG	.	105	20	64	0	.	94	A	41021261	G	A	41021261	3	1	197	1	0	0	0	0	1	0	0	0	15120	1145	40	1	2863	1	SPTBN4	19	41021261	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	2075385	41021261	18107722	83	26026											
ZNF576	79177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44103150	44103150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF576	NM_001145347	exon3	c.G253A	p.A85T	TCCAAAGCCCTAA	.	128	36	73	0	.	90	A	44103150	G	A	44103150	3	1	197	1	0	0	0	0	1	0	0	0	18005	971	34	3	259	3	ZNF576	19	44103150	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	3081889	44103150	15025833	84	26027											
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50789947	50789947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MYH14	NM_001145809	exon34	c.A4748T	p.K1583M	TCGGCAAGAGCGT	.	95	29	94	0	.	23	T	50789947	A	T	50789947	3	4	197	1	0	0	0	0	1	0	0	0	10033	72	3	4	4878	4	MYH14	19	50789947	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	6686797	50789947	8339036	85	26028											
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54672012	54672012	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TMC4	NM_001145303	exon5	c.C700T	p.L234L	ATTCCAGGTAACC	.	130	38	136	0	.	91	A	54672012	G	A	54672012	2	1	197	1	0	0	0	0	0	0	0	1	15984	991	35	3		3	TMC4	19	54672012	Silent	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	3882065	54672012	4456971	86	26029											
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20257971	20257971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C20orf26	NM_015585	exon22	c.G2665A	p.A889T	GCGGACGCGCTAG	.	105	21	101	0	.	94	A	20257971	G	A	20257971	3	1	197	1	0	0	0	0	1	0	0	0	2106	1087	38	1	2779	1	C20orf26	20	20257971	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10		20257971	42767549	87	26030											
NAPB	63908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23360527	23360527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NAPB	NM_022080	exon9	c.T712G	p.S238A	CTCTTGAATCAGT	.	447	108	350	0	.	91	C	23360527	A	C	23360527	3	2	197	1	0	0	0	0	1	0	0	0	10162	246	9	5	196	5	NAPB	20	23360527	Missense_Mutation	SNP	A	TCGA-UB-A7ME-01A-11D-A33K-10	3102556	23360527	39664993	88	26031											
CST5	1473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	23856826	23856826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CST5	NM_001900	exon3	c.A428T	p.X143L	GACCCCTAGACTT	.	142	56	97	0	.	90	A	23856826	T	A	23856826	3	1	197	1	0	0	0	0	1	0	0	0	3975	1535	53	4	4	4	CST5	20	23856826	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	496299	23856826	39168694	89	26032											
DEFB119	245932	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	29978247	29978247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DEFB119	NM_001271209	exon1	c.A40T	p.I14L	CTTCTATGGCCAG	.	190	50	126	1	.	90	A	29978247	T	A	29978247	3	1	197	1	0	0	0	0	1	0	0	0	4407	1464	51	4	476	4	DEFB119	20	29978247	Missense_Mutation	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	6121421	29978247	33047273	90	26033											
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36856566	36856566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KIAA1755	NM_001029864	exon6	c.G1948A	p.A650T	GCAGGGCGCTGAC	.	27	4	32	0	.	95	T	36856566	C	T	36856566	3	4	197	1	0	0	0	0	1	0	0	0	8257	768	27	1	1690	1	KIAA1755	20	36856566	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10	6878319	36856566	26168954	91	26034											
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37117219	37117219	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RALGAPB	NM_020336	exon2	c.T144G	p.P48P	TACCCCTTCAGTG	.	179	41	92	0	.	92	G	37117219	T	G	37117219	2	3	197	1	0	0	0	0	0	0	0	1	13015	1596	56	5		5	RALGAPB	20	37117219	Silent	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10	260653	37117219	25908301	92	26035											
MATN4	8785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43929960	43929960	+	Splice_Site	DEL	C	C	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MATN4	NM_003833	exon5	c.766+1G>-	.	TGCTCACCCCTGC	.	112	26	48	0	.	90	-	43929960	C	-	43929960	8	5	197	1	0	1	0	1	0	0	1	0	9336	521	18	0	1006	0	MATN4	20	43929960	Splice_Site	DEL	C	TCGA-UB-A7ME-01A-11D-A33K-10	6812741	43929960	19095560	93	26036											
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45129982	45129982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF334	NM_018102	exon5	c.C1996T	p.R666C	TGTGGCGAAATGT	.	221	20	116	0	.	92	A	45129982	G	A	45129982	3	1	197	1	0	0	0	0	1	0	0	0	17848	1058	37	1	50	1	ZNF334	20	45129982	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	1200022	45129982	17895538	94	26037											
OGFR	11054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	61443964	61443964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OGFR	NM_007346	exon7	c.G997C	p.E333Q	GGGCCAGAGCATA	.	113	45	70	0	.	68	C	61443964	G	C	61443964	3	2	197	1	0	0	0	0	1	0	0	0	10843	943	33	4	1023	4	OGFR	20	61443964	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	16313982	61443964	1581556	95	26038											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44837443	44837443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SIK1	NM_173354	exon13	c.G1956T	p.E652D	CACCTCCTCCAGC	.	80	20	65	0	.	346	A	44837443	C	A	44837443	3	1	197	1	0	0	0	0	1	0	0	0	14317	680	24	3	403	3	SIK1	21	44837443	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10		44837443	3292452	96	26039											
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46117560	46117561	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP10-12	NM_198699	exon1	c.444_445insTT	p.Q148fs	GTGTCAACAGTCC	.	28	13	27	0	.	90	TT	46117561	-	TT	46117560	7	5	197	1	0	1	1	0	0	0	0	0	8508	40	2	0	446	0	KRTAP10-12	21	46117560	Frame_Shift_Ins	INS	-	TCGA-UB-A7ME-01A-11D-A33K-10	1280117	46117560	2012335	97	26040											
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31484509	31484509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SMTN	NM_001207018	exon3	c.C379T	p.R127W	CAGCAGCGGGAAG	.	103	19	73	0	.	154	T	31484509	C	T	31484509	3	4	197	1	0	0	0	0	1	0	0	0	14814	759	27	1	221	1	SMTN	22	31484509	Missense_Mutation	SNP	C	TCGA-UB-A7ME-01A-11D-A33K-10		31484509	19820057	98	26041											
FBXO7	25793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32881139	32881139	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FBXO7	NM_012179	exon4	c.G730C	p.E244Q	CTCTGCGAGGGCA	.	151	25	112	0	.	228	C	32881139	G	C	32881139	3	2	197	1	0	0	0	0	1	0	0	0	5760	1059	37	4	785	4	FBXO7	22	32881139	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	1396630	32881139	18423427	99	26042											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41069765	41069765	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP9X	NM_001039591	exon33	c.T5019A	p.L1673L	TAGGCTTTGGGGT	.	178	55	108	0	.	563	A	41069765	T	A	41069765	2	1	197	1	0	0	0	0	0	0	0	1	17087	1828	64	4		4	USP9X	23	41069765	Silent	SNP	T	TCGA-UB-A7ME-01A-11D-A33K-10		41069765	114200795	100	26043											
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90691012	90691012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	PABPC5,NS,carcinoma,-1	PABPC5	NM_080832	exon2	c.G436T	p.G146C	TCTAAGGGTTATG	.	110	75	76	0	.	110	T	90691012	G	T	90691012	3	4	197	1	0	0	0	0	1	0	0	0	11367	1232	43	3	438	3	PABPC5	23	90691012	Missense_Mutation	SNP	G	TCGA-UB-A7ME-01A-11D-A33K-10	49621247	90691012	64579548	101	26044											
ANXA9	8416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150960818	150960818	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ANXA9	NM_003568	exon12	c.852+1G>A	.	CTCCAGGTGAGAG	.	119	43	80	0	.	90	A	150960818	G	A	150960818	5	1	198	1	0	0	0	0	0	0	1	0	725	1275	44	3	891	3	ANXA9	1	150960818	Splice_Site	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		150960818	98289803	1	26045											
NPR1	4881	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153654209	153654209	+	Silent	SNP	C	C	T	rs200678502		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NPR1	NM_000906	exon4	c.C1065T	p.D355D	CCACGACGGGCTC	.	214	89	178	1	C|0.999;T|0.001	393	T	153654209	C	T	153654209	2	4	198	1	0	0	0	0	0	0	0	1	10594	535	19	1		1	NPR1	1	153654209	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	2693391	153654209	95596412	2	26046											
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175335172	175335172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TNR	NM_003285	exon11	c.C2156G	p.T719S	GTAAAGGTAATTC	.	172	91	131	0	.	324	C	175335172	G	C	175335172	3	2	198	1	0	0	0	0	1	0	0	0	16335	1261	44	4	1972	4	TNR	1	175335172	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	21680963	175335172	73915449	3	26047											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177226365	177226365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FAM5B	NM_021165	exon4	c.G514A	p.E172K	AAGACAGAGACAA	.	282	80	251	0	.	28	A	177226365	G	A	177226365	3	1	198	1	0	0	0	0	1	0	0	0	5593	943	33	3	524	3	FAM5B	1	177226365	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	1891193	177226365	72024256	4	26048											
FAM72A	729533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	206145524	206145525	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FAM72A	NM_001123168	exon3	c.301_302insTC	p.F101fs	GGACACTTCTGGA	.	596	93	481	0	.	68	TC	206145525	-	TC	206145524	7	5	198	1	0	1	1	0	0	0	0	0	5614	1609	56	0	311	0	FAM72A	1	206145524	Frame_Shift_Ins	INS	-	TCGA-UB-A7MF-01A-11D-A33K-10	28919159	206145524	43105097	5	26049											
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212190324	212190324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	INTS7	NM_015434	exon4	c.A413G	p.N138S	TGAGCATTCTTCC	.	223	76	183	0	.	90	C	212190324	T	C	212190324	3	2	198	1	0	0	0	0	1	0	0	0	7783	1493	52	2	2543	2	INTS7	1	212190324	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	6044800	212190324	37060297	6	26050											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu	37	1	231931028	231931028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DISC1	NM_001164537	exon8	c.G1771T	p.E591X	CTTAAAGAAATCA	.	85	5	71	0	.	91	T	231931028	G	T	231931028	4	4	198	1	0	0	0	0	0	1	0	0	4538	943	33	3	2074	3	DISC1	1	231931028	Nonsense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	19740704	231931028	17319593	7	26051											
OR2L3	391192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248224001	248224001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	OR2L3	NM_001004687	exon1	c.A18T	p.Q6H	CAATCAAACATCA	.	180	80	160	0	.	68	T	248224001	A	T	248224001	3	4	198	1	0	0	0	0	1	0	0	0	11008	11	1	4	20	4	OR2L3	1	248224001	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	16292973	248224001	1026620	8	26052											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926072	1926072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYT1L	NM_015025	exon10	c.C1469A	p.P490Q	TAGTATGGCTTTT	.	122	26	100	0	.	95	T	1926072	G	T	1926072	3	4	198	1	0	0	0	0	1	0	0	0	10107	1348	47	3	2149	3	MYT1L	2	1926072	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		1926072	241273301	9	26053											
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	157186301	157186301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NR4A2	NM_006186	exon3	c.C398T	p.P133L	AAGCCCGGGGTGG	.	66	9	70	0	.	189	A	157186301	G	A	157186301	3	1	198	1	0	0	0	0	1	0	0	0	10633	1116	39	1	1422	1	NR4A2	2	157186301	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	155260229	157186301	86013072	10	26054											
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	180853328	180853332	+	Frame_Shift_Del	DEL	TGATA	TGATA	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	TGATA	TGATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CWC22	NM_020943	exon3	c.67_71del	p.23_24del	TTCCTCTGATATG	.	162	14	183	0	.	90	-	180853332	TGATA	-	180853328	7	5	198	1	0	1	0	1	0	0	0	0	4068	1580	55	0	2727	0	CWC22	2	180853328	Frame_Shift_Del	DEL	TGATA	TCGA-UB-A7MF-01A-11D-A33K-10	23667027	180853328	62346045	11	26055											
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191841668	191841668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	STAT1	NM_007315	exon22	c.G1957C	p.V653L	CCATGACTTTGTA	.	106	59	131	0	.	1335	G	191841668	C	G	191841668	3	3	198	1	0	0	0	0	1	0	0	0	15263	565	20	4	315	4	STAT1	2	191841668	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	10988340	191841668	51357705	12	26056											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219225307	219225307	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	C2orf62	NM_198559	exon5	c.C387T	p.L129L	CATCCTCCCCATG	.	39	10	41	0	.	68	T	219225307	C	T	219225307	2	4	198	1	0	0	0	0	0	0	0	1	2181	842	30	3		3	C2orf62	2	219225307	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	27383639	219225307	23974066	13	26057											
NDUFA10	4705	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240946749	240946749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NDUFA10	NM_004544	exon7	c.C788A	p.A263D	TCTTGAGCTTCCC	.	61	6	76	0	.	514	T	240946749	G	T	240946749	3	4	198	1	0	0	0	0	1	0	0	0	10260	971	34	3	295	3	NDUFA10	2	240946749	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	21721442	240946749	2252624	14	26058											
ZNF385D	79750	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	21462743	21462743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF385D	NM_024697	exon8	c.G1151A	p.R384Q	GCGGTCCGAATGG	.	66	14	81	1	.	156	T	21462743	C	T	21462743	3	4	198	1	0	0	0	0	1	0	0	0	17875	652	23	1	40	1	ZNF385D	3	21462743	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		21462743	176559687	15	26059											
NKTR	4820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42672063	42672063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NKTR	NM_005385	exon7	c.G400C	p.D134H	CACCTGGATGGGT	.	89	12	141	0	.	93	C	42672063	G	C	42672063	3	2	198	1	0	0	0	0	1	0	0	0	10448	1174	41	4	422	4	NKTR	3	42672063	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	21209320	42672063	155350367	16	26060											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49720485	49720485	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	APEH	NM_001640	exon21	c.C1999T	p.L667L	ACACCACTGTTAC	.	58	26	96	0	.	91	T	49720485	C	T	49720485	2	4	198	1	0	0	0	0	0	0	0	1	768	564	20	3		3	APEH	3	49720485	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	7048422	49720485	148301945	17	26061											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152554423	152554423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	P2RY1	NM_002563	exon1	c.G852C	p.L284F	GAACTTGAGGGCC	.	88	42	117	0	.	500	C	152554423	G	C	152554423	3	2	198	1	0	0	0	0	1	0	0	0	11346	1281	45	4	854	4	P2RY1	3	152554423	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	102833938	152554423	45468007	18	26062											
ADRA2C	152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3768933	3768933	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ADRA2C	NM_000683	exon1	c.G600A	p.P200P	CTACCCGCAGTGC	.	20	5	37	0	.	522	A	3768933	G	A	3768933	2	1	198	1	0	0	0	0	0	0	0	1	339	1074	38	1		1	ADRA2C	4	3768933	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		3768933	187385343	19	26063											
UGT2B4	7363	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70351040	70351040	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	UGT2B4	NM_021139	exon5	c.A1196C	p.Q399P	TCAGGTTGATCTG	.	418	74	306	2	.	92	G	70351040	T	G	70351040	3	3	198	1	0	0	0	0	1	0	0	0	16958	1812	63	5	398	5	UGT2B4	4	70351040	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	66582107	70351040	120803236	20	26064											
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70359471	70359471	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	UGT2B4	NM_021139	exon2	c.C810G	p.L270L	TGGTAAGAGTGGG	.	111	60	87	0	.	92	C	70359471	G	C	70359471	2	2	198	1	0	0	0	0	0	0	0	1	16958	929	33	4		4	UGT2B4	4	70359471	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	8431	70359471	120794805	21	26065											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119951206	119951206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SYNPO2	NM_001128934	exon4	c.G1276C	p.E426Q	GAGGAAGAAGGTG	.	125	93	138	0	.	92	C	119951206	G	C	119951206	3	2	198	1	0	0	0	0	1	0	0	0	15454	943	33	4	1290	4	SYNPO2	4	119951206	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	49591735	119951206	71203070	22	26066											
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141489132	141489132	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	UCP1	NM_021833	exon3	c.127-1G>A	.	TTGGACCTGGAAA	.	43	32	50	0	.	91	T	141489132	C	T	141489132	5	4	198	1	0	0	0	0	0	0	1	0	16927	695	24	3	815	3	UCP1	4	141489132	Splice_Site	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	21537926	141489132	49665144	23	26067											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13788992	13788992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DNAH5	NM_001369	exon51	c.A8480G	p.K2827R	ACACGTTTACACT	.	183	116	141	0	.	182	C	13788992	T	C	13788992	3	2	198	1	0	0	0	0	1	0	0	0	4604	1841	64	2	5510	2	DNAH5	5	13788992	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10		13788992	167126268	24	26068											
TSLP	85480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	110409224	110409224	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TSLP	NM_033035	exon3	c.G232T	p.E78X	CTTACTGAAATCC	.	251	42	311	0	.	90	T	110409224	G	T	110409224	4	4	198	1	0	0	0	0	0	1	0	0	16625	1291	45	3	242	3	TSLP	5	110409224	Nonsense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	96620232	110409224	70506036	25	26069											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127680141	127680141	+	Silent	SNP	G	G	T	rs142809999	alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FBN2	NM_001999	exon25	c.C3279A	p.I1093I	GCTTCCGATTGTA	.	74	17	122	0	G|0.999;A|0.000	146	T	127680141	G	T	127680141	2	4	198	1	0	0	0	0	0	0	0	1	5703	1048	37	1		1	FBN2	5	127680141	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	17270917	127680141	53235119	26	26070											
RIPK1	8737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3106166	3106166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RIPK1	NM_003804	exon8	c.C1457T	p.P486L	CAGGTCCCAGAGT	.	254	109	204	0	.	1044	T	3106166	C	T	3106166	3	4	198	1	0	0	0	0	1	0	0	0	13380	623	22	3	1487	3	RIPK1	6	3106166	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		3106166	168008901	27	26071											
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64004842	64004842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	LGSN	NM_016571	exon2	c.G139A	p.E47K	CCGTTTCTCCCAC	.	129	49	128	0	.	227	T	64004842	C	T	64004842	3	4	198	1	0	0	0	0	1	0	0	0	8759	922	32	3	1402	3	LGSN	6	64004842	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	60898676	64004842	107110225	28	26072											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76527267	76527267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYO6	NM_004999	exon2	c.G3A	p.M1I	AAAAATGGAGGAT	.	97	47	94	0	.	92	A	76527267	G	A	76527267	3	1	198	1	0	0	0	0	1	0	0	0	10081	1348	47	3	5	3	MYO6	6	76527267	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	12522425	76527267	94587800	29	26073											
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246394	97246394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GPR63	NM_030784	exon2	c.G1214A	p.R405H	CTAGGACGTATCC	.	163	69	159	0	.	92	T	97246394	C	T	97246394	3	4	198	1	0	0	0	0	1	0	0	0	6704	536	19	1	49	1	GPR63	6	97246394	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	20719127	97246394	73868673	30	26074											
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102134211	102134211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GRIK2	NM_021956	exon6	c.C934A	p.L312M	GGTTTGCTGGATG	.	117	15	124	0	.	157	A	102134211	C	A	102134211	3	1	198	1	0	0	0	0	1	0	0	0	6774	796	28	3	956	3	GRIK2	6	102134211	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	4887817	102134211	68980856	31	26075											
FIG4	9896	broad.mit.edu;mdanderson.org	37	6	110107511	110107511	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FIG4	NM_014845	exon18	c.G1955C	p.C652S	TTATCTGTGCTGT	.	60	6	52	0	.	69	C	110107511	G	C	110107511	3	2	198	1	0	0	0	0	1	0	0	0	5888	1377	48	4	2025	4	FIG4	6	110107511	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	7973300	110107511	61007556	32	26076											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522371	157522371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ARID1B	NM_020732	exon18	c.A4643G	p.N1548S	TGCCAAATCACAT	.	50	20	45	0	.	154	G	157522371	A	G	157522371	3	3	198	1	0	0	0	0	1	0	0	0	914	101	4	2	4713	2	ARID1B	6	157522371	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	47414860	157522371	13592696	33	26077											
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4245592	4245592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SDK1	NM_152744	exon36	c.C5180T	p.P1727L	CACCCCCGGAGAG	.	117	39	134	0	.	138	T	4245592	C	T	4245592	3	4	198	1	0	0	0	0	1	0	0	0	13968	652	23	1	5322	1	SDK1	7	4245592	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		4245592	154893071	34	26078											
GPC2	221914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99769820	99769820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GPC2	NM_152742	exon6	c.G913A	p.D305N	GCTTATCAGCCAG	.	51	5	50	0	.	154	T	99769820	C	T	99769820	3	4	198	1	0	0	0	0	1	0	0	0	6598	826	29	3	846	3	GPC2	7	99769820	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	95524228	99769820	59368843	35	26079											
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138394421	138394421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ATP6V0A4	NM_130841	exon20	c.C2377G	p.L793V	TCAGAAGGATGGC	.	155	72	209	0	.	91	C	138394421	G	C	138394421	3	2	198	1	0	0	0	0	1	0	0	0	1170	1000	35	4	153	4	ATP6V0A4	7	138394421	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	38624601	138394421	20744242	36	26080											
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142723964	142723964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	OR9A2	NM_001001658	exon1	c.T256C	p.F86L	CCAGGAAGAGCAA	.	101	24	160	0	.	69	G	142723964	A	G	142723964	3	3	198	1	0	0	0	0	1	0	0	0	11248	72	3	2	680	2	OR9A2	7	142723964	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	4329543	142723964	16414699	37	26081											
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21827677	21827677	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	XPO7	NM_015024	exon4	c.T282C	p.L94L	CTACCTTGCCACT	.	52	12	86	0	.	273	C	21827677	T	C	21827677	2	2	198	1	0	0	0	0	0	0	0	1	17446	1799	63	2		2	XPO7	8	21827677	Silent	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10		21827677	124536345	38	26082											
SCARA5	286133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27764734	27764734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SCARA5	NM_173833	exon6	c.T1027A	p.L343M	CGGGCAATCCTGG	.	21	6	45	0	.	91	T	27764734	A	T	27764734	3	4	198	1	0	0	0	0	1	0	0	0	13880	98	4	4	476	4	SCARA5	8	27764734	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	5937057	27764734	118599288	39	26083											
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	36675256	36675256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	KCNU1	NM_001031836	exon10	c.A1084G	p.T362A	ATCAACACTGAAA	.	59	25	115	0	.	23	G	36675256	A	G	36675256	3	3	198	1	0	0	0	0	1	0	0	0	8093	159	6	2	1122	2	KCNU1	8	36675256	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	8910522	36675256	109688766	40	26084											
NKX6-3	157848	broad.mit.edu;mdanderson.org	37	8	41504161	41504161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NKX6-3	NM_152568	exon2	c.C215T	p.P72L	GACGAGGGCTCCA	.	21	5	26	0	.	90	A	41504161	G	A	41504161	3	1	198	1	0	0	0	0	1	0	0	0	10459	1232	43	3	196	3	NKX6-3	8	41504161	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	4828905	41504161	104859861	41	26085											
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75929298	75929298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CRISPLD1	NM_031461	exon9	c.G946T	p.G316C	CCTGCTGGCTGTT	.	158	23	214	0	.	91	T	75929298	G	T	75929298	3	4	198	1	0	0	0	0	1	0	0	0	3882	1348	47	3	976	3	CRISPLD1	8	75929298	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	34425137	75929298	70434724	42	26086											
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93023242	93023242	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RUNX1T1	NM_001198679	exon5	c.C723A	p.I241I	AAATGGGATGACA	.	76	35	102	0	.	1196	T	93023242	G	T	93023242	2	4	198	1	0	0	0	0	0	0	0	1	13747	1164	41	3		3	RUNX1T1	8	93023242	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	17093944	93023242	53340780	43	26087											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141294100	141294100	+	Missense_Mutation	SNP	C	C	T	rs147687394		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TRAPPC9	NM_031466	exon14	c.G2296A	p.G766S	ACACACCGAAGAC	.	73	10	102	0	C|1.000;T|0.000	228	T	141294100	C	T	141294100	3	4	198	1	0	0	0	0	1	0	0	0	16462	652	23	1	1484	1	TRAPPC9	8	141294100	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	48270858	141294100	5069922	44	26088											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	32550784	32550784	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TOPORS	NM_005802	exon2	c.G186A	p.P62P	GGATGCCGGCGCA	.	245	95	195	0	.	230	T	32550784	C	T	32550784	2	4	198	1	0	0	0	0	0	0	0	1	16367	639	23	1		1	TOPORS	9	32550784	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		32550784	108662647	45	26089											
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139617859	139617859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FAM69B	NM_152421	exon5	c.A929G	p.D310G	CCTACGACTTCAA	.	91	22	131	0	.	90	G	139617859	A	G	139617859	3	3	198	1	0	0	0	0	1	0	0	0	5603	275	10	2	947	2	FAM69B	9	139617859	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	107067075	139617859	1595572	46	26090											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24832181	24832187	+	Frame_Shift_Del	DEL	TCAAGCG	TCAAGCG	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	TCAAGCG	TCAAGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	KIAA1217	NM_019590	exon19	c.3982_3988del	p.1328_1330del	ACAGAATCAAGCG	.	117	32	118	0	.	98	-	24832187	TCAAGCG	-	24832181	7	5	198	1	0	1	0	1	0	0	0	0	8216	1435	50	0	4056	0	KIAA1217	10	24832181	Frame_Shift_Del	DEL	TCAAGCG	TCGA-UB-A7MF-01A-11D-A33K-10		24832181	110702566	47	26091											
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45478109	45478109	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RASSF4	NM_032023	exon4	c.T279A	p.P93P	CTGCCCTCTGTGA	.	81	31	99	0	.	290	A	45478109	T	A	45478109	2	1	198	1	0	0	0	0	0	0	0	1	13088	1538	54	4		4	RASSF4	10	45478109	Silent	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	20645928	45478109	90056638	48	26092											
ZNF488	118738	hgsc.bcm.edu;bcgsc.ca	37	10	48371553	48371554	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF488	NM_153034	exon2	c.1021_1022del	p.341_341del	CACAGCTAGCAGG	.	50	15	39	0	.	91	-	48371554	TA	-	48371553	7	5	198	1	0	1	0	1	0	0	0	0	17937	1535	53	0	1023	0	ZNF488	10	48371553	Frame_Shift_Del	DEL	TA	TCGA-UB-A7MF-01A-11D-A33K-10	2893444	48371553	87163194	49	26093											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61833020	61833020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ANK3	NM_020987	exon37	c.C7619T	p.T2540I	AACACTGTCACTT	.	111	46	127	0	.	107	A	61833020	G	A	61833020	3	1	198	1	0	0	0	0	1	0	0	0	622	1377	48	3	5855	3	ANK3	10	61833020	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	13461467	61833020	73701727	50	26094											
TET1	80312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70450720	70450720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TET1	NM_030625	exon12	c.A5560G	p.T1854A	CCGAAGACTGCTT	.	82	31	88	1	.	663	G	70450720	A	G	70450720	3	3	198	1	0	0	0	0	1	0	0	0	15766	275	10	2	5602	2	TET1	10	70450720	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	8617700	70450720	65084027	51	26095											
TCERG1L	256536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133058601	133058601	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TCERG1L	NM_174937	exon4	c.G777A	p.P259P	GGGGGACGGGCCC	.	37	13	29	0	.	138	T	133058601	C	T	133058601	2	4	198	1	0	0	0	0	0	0	0	1	15683	523	19	1		1	TCERG1L	10	133058601	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	62607881	133058601	2476146	52	26096											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134999499	134999499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	KNDC1	NM_152643	exon6	c.G647A	p.R216Q	GCTGGCGGGAGAG	.	67	15	37	0	.	229	A	134999499	G	A	134999499	3	1	198	1	0	0	0	0	1	0	0	0	8426	1116	39	1	669	1	KNDC1	10	134999499	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	1940898	134999499	535248	53	26097											
VENTX	27287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135053718	135053718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	VENTX	NM_014468	exon3	c.C685G	p.P229A	TCCCACCCCCCTA	.	40	18	37	0	.	90	G	135053718	C	G	135053718	3	3	198	1	0	0	0	0	1	0	0	0	17150	623	22	4	695	4	VENTX	10	135053718	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	54219	135053718	481029	54	26098											
OR52R1	119695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4825734	4825734	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	OR52R1	.	.	.	.	TGATTGGGTTTGA	.	87	34	82	0	.	69	A	4825734	G	A	4825734	2	1	198	1	0	0	0	0	0	0	0	1	11131	1247	43	3		3	OR52R1	11	4825734	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		4825734	130180782	55	26099											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17153463	17153463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PIK3C2A	NM_002645	exon11	c.T2231C	p.L744P	ACTTACAGTTCAT	.	215	41	174	0	.	1310	G	17153463	A	G	17153463	3	3	198	1	0	0	0	0	1	0	0	0	11909	202	7	2	2917	2	PIK3C2A	11	17153463	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	12327729	17153463	117853053	56	26100											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20057523	20057523	+	Silent	SNP	C	C	A	rs199691877	alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NAV2	NM_001244963	exon13	c.C2856A	p.S952S	CAGCTCCGTCAGC	.	97	36	113	0	C|0.999;T|0.000	96	A	20057523	C	A	20057523	2	1	198	1	0	0	0	0	0	0	0	1	10184	639	23	1		1	NAV2	11	20057523	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	2904060	20057523	114948993	57	26101											
C11orf49	79096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47182742	47182743	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	C11orf49	NM_001003676	exon8	c.822_823insT	p.L274fs	ACGGCTGTAAGTG	.	79	17	101	0	.	90	T	47182743	-	T	47182742	7	5	198	1	0	1	1	0	0	0	0	0	1645	1391	48	0	852	0	C11orf49	11	47182742	Frame_Shift_Ins	INS	-	TCGA-UB-A7MF-01A-11D-A33K-10	27125219	47182742	87823774	58	26102											
PC	5091	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	66639215	66639215	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PC	NM_000920	exon4	c.C264T	p.R88R	CAGGCCGCGGCCG	.	42	10	37	1	.	228	A	66639215	G	A	66639215	2	1	198	1	0	0	0	0	0	0	0	1	11497	1074	38	1		1	PC	11	66639215	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	19456473	66639215	68367301	59	26103											
DNAJB13	374407	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73681145	73681145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DNAJB13	NM_153614	exon8	c.G937A	p.A313T	CGCCAGGCATTGC	.	84	23	105	1	.	90	A	73681145	G	A	73681145	3	1	198	1	0	0	0	0	1	0	0	0	4618	1203	42	3	967	3	DNAJB13	11	73681145	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	7041930	73681145	61325371	60	26104											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94354053	94354053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PIWIL4	NM_152431	exon20	c.T2454G	p.S818R	AGTCAGTGTCCCA	.	76	17	90	0	.	91	G	94354053	T	G	94354053	3	3	198	1	0	0	0	0	1	0	0	0	11960	1693	59	5	2532	5	PIWIL4	11	94354053	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	20672908	94354053	40652463	61	26105											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105795190	105795190	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GRIA4	NM_001077243	exon12	c.T1542A	p.S514S	CTTTTCTAAGCCC	.	100	20	104	0	.	230	A	105795190	T	A	105795190	2	1	198	1	0	0	0	0	0	0	0	1	6770	1509	53	4		4	GRIA4	11	105795190	Silent	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	11441137	105795190	29211326	62	26106											
PCSK7	9159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117096683	117096683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PCSK7	NM_004716	exon6	c.A824G	p.N275S	TGCTTGTTGAACG	.	42	22	54	0	.	658	C	117096683	T	C	117096683	3	2	198	1	0	0	0	0	1	0	0	0	11605	1725	60	2	1581	2	PCSK7	11	117096683	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	11301493	117096683	17909833	63	26107											
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119103248	119103248	+	Missense_Mutation	SNP	C	C	T	rs147438359		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CBL	NM_005188	exon2	c.C286T	p.R96C	CATCTCCGTACTA	.	63	19	81	0	C|1.000;T|0.000	4020	T	119103248	C	T	119103248	3	4	198	1	0	0	0	0	1	0	0	0	2700	652	23	1	292	1	CBL	11	119103248	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	2006565	119103248	15903268	64	26108											
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095563	124095563	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_001007249	exon1	c.T166G	p.L56V	GGCAACTTGAGCA	.	85	15	96	0	.	.	G	124095563	T	G	124095563	3	3	198	1	0	0	0	0	1	0	0	0	11235	1606	56	5	168	5	OR8G2	11	124095563	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	4992315	124095563	10910953	65	26109											
CLEC6A	93978	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8612254	8612254	+	Silent	SNP	T	T	C	rs142509792	byfrequency;alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CLEC6A	NM_001007033	exon3	c.T183C	p.H61H	ATATCATTCAAGT	.	101	37	81	0	T|0.999;A|0.001	135	C	8612254	T	C	8612254	2	2	198	1	0	0	0	0	0	0	0	1	3520	1490	52	2		2	CLEC6A	12	8612254	Silent	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10		8612254	125239641	66	26110											
CLEC4D	338339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8672896	8672896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CLEC4D	NM_080387	exon5	c.G459T	p.Q153H	AGGTCAGTGGCGT	.	102	14	111	0	.	90	T	8672896	G	T	8672896	3	4	198	1	0	0	0	0	1	0	0	0	3514	1020	36	3	477	3	CLEC4D	12	8672896	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	60642	8672896	125178999	67	26111											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43846137	43846137	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ADAMTS20	NM_025003	exon14	c.T2019A	p.V673V	ATCTTCAACCATA	.	75	14	85	0	.	795	T	43846137	A	T	43846137	2	4	198	1	0	0	0	0	0	0	0	1	266	117	5	4		4	ADAMTS20	12	43846137	Silent	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	35173241	43846137	90005758	68	26112											
HOXC11	3227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	54367576	54367576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	HOXC11	NM_014212	exon1	c.C551T	p.P184L	AGGCACCCCCGGC	.	74	13	70	0	.	683	T	54367576	C	T	54367576	3	4	198	1	0	0	0	0	1	0	0	0	7310	623	22	3	553	3	HOXC11	12	54367576	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	10521439	54367576	79484319	69	26113											
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85279232	85279232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SLC6A15	NM_018057	exon4	c.A556G	p.K186E	CATTTTTCACCAA	.	214	86	234	0	.	93	C	85279232	T	C	85279232	3	2	198	1	0	0	0	0	1	0	0	0	14678	1792	62	2	1786	2	SLC6A15	12	85279232	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	30911656	85279232	48572663	70	26114											
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	115109981	115109981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TBX3	NM_016569	exon8	c.A1897T	p.T633S	GCATGGTGTTCAG	.	46	26	49	0	.	93	A	115109981	T	A	115109981	3	1	198	1	0	0	0	0	1	0	0	0	15656	1696	59	4	338	4	TBX3	12	115109981	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	29830749	115109981	18741914	71	26115											
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	22077105	22077105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	EFHA1	NM_152726	exon9	c.T893C	p.I298T	CAATAAATATCTT	.	62	40	84	0	.	90	G	22077105	A	G	22077105	3	3	198	1	0	0	0	0	1	0	0	0	4943	101	4	2	427	2	EFHA1	13	22077105	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10		22077105	93092773	72	26116											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	36202217	36202217	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NBEA	NM_015678	exon49	c.7450-1G>T	.	ATTTCAGGCCCTA	.	57	18	113	0	.	144	T	36202217	G	T	36202217	5	4	198	1	0	0	0	0	0	0	1	0	10187	1014	35	3	7643	3	NBEA	13	36202217	Splice_Site	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	14125112	36202217	78967661	73	26117											
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	94680117	94680117	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GPC6	NM_005708	exon4	c.T846C	p.A282A	TCAGGCTGACCTC	.	178	12	85	0	.	90	C	94680117	T	C	94680117	2	2	198	1	0	0	0	0	0	0	0	1	6602	1567	55	2		2	GPC6	13	94680117	Silent	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	58477900	94680117	20489761	74	26118											
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103328668	103328668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TPP2	NM_003291	exon28	c.A3563T	p.H1188L	ATAAACATGCATT	.	673	451	312	0	.	92	T	103328668	A	T	103328668	3	4	198	1	0	0	0	0	1	0	0	0	16409	217	8	4	3673	4	TPP2	13	103328668	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	8648551	103328668	11841210	75	26119											
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113750685	113750685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MCF2L	NM_001112732	exon28	c.G3076A	p.V1026I	CACCAGGTTCCAG	.	190	18	107	0	.	228	A	113750685	G	A	113750685	3	1	198	1	0	0	0	0	1	0	0	0	9379	1275	44	3	3452	3	MCF2L	13	113750685	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	10422017	113750685	1419193	76	26120											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23894029	23894029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYH7	NM_000257	exon22	c.G2628C	p.K876N	CACCATCTTCTCC	.	79	19	73	0	.	94	G	23894029	C	G	23894029	3	3	198	1	0	0	0	0	1	0	0	0	10039	912	32	4	3255	4	MYH7	14	23894029	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		23894029	83455511	77	26121											
PTGDR	5729	broad.mit.edu;bcgsc.ca	37	14	52735356	52735356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PTGDR	NM_000953	exon1	c.C824A	p.T275N	TCTTCACTATGTG	.	84	5	79	0	.	524	A	52735356	C	A	52735356	3	1	198	1	0	0	0	0	1	0	0	0	12741	565	20	3	826	3	PTGDR	14	52735356	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	28841327	52735356	54614184	78	26122											
TMOD3	29766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52194155	52194155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TMOD3	NM_014547	exon9	c.C946G	p.L316V	AATATCCTTAAAT	.	221	86	224	1	.	91	G	52194155	C	G	52194155	3	3	198	1	0	0	0	0	1	0	0	0	16232	681	24	4	976	4	TMOD3	15	52194155	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		52194155	50337237	79	26123											
SH3GL3	6457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84241337	84241337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SH3GL3	NM_003027	exon5	c.G352C	p.G118R	GAAGTTGGTGAAT	.	77	24	74	0	.	92	C	84241337	G	C	84241337	3	2	198	1	0	0	0	0	1	0	0	0	14252	1348	47	4	370	4	SH3GL3	15	84241337	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	32047182	84241337	18290055	80	26124											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1260417	1260417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CACNA1H	NM_021098	exon19	c.A3893G	p.H1298R	TTGATCACGTGGT	.	54	23	90	0	.	67	G	1260417	A	G	1260417	3	3	198	1	0	0	0	0	1	0	0	0	2545	159	6	2	3963	2	CACNA1H	16	1260417	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10		1260417	89094336	81	26125											
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2257035	2257035	+	Splice_Site	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MLST8	NM_022372	exon5	c.345-1G>C	.	CCCGCAGGTCCCG	.	152	34	189	0	.	392	C	2257035	G	C	2257035	5	2	198	1	0	0	0	0	0	0	1	0	9634	1014	35	4	358	4	MLST8	16	2257035	Splice_Site	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	996618	2257035	88097718	82	26126											
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67006828	67006828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CES3	NM_024922	exon13	c.C1592A	p.P531Q	TCAACCCAGTGCC	.	83	38	109	0	.	517	A	67006828	C	A	67006828	3	1	198	1	0	0	0	0	1	0	0	0	3271	594	21	3	1642	3	CES3	16	67006828	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	64749793	67006828	23347925	83	26127											
ATP6V0D1	9114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67472440	67472440	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ATP6V0D1	NM_004691	exon8	c.T1047A	p.P349P	GAAGATAGGGATG	.	98	26	132	0	.	90	T	67472440	A	T	67472440	2	4	198	1	0	0	0	0	0	0	0	1	1173	407	15	4		4	ATP6V0D1	16	67472440	Silent	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	465612	67472440	22882313	84	26128											
DPEP2	64174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68026979	68026979	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DPEP2	NM_022355	exon2	c.T137A	p.L46Q	GCGCCCAGCGTGG	.	59	22	65	0	.	91	T	68026979	A	T	68026979	3	4	198	1	0	0	0	0	1	0	0	0	4714	188	7	4	1363	4	DPEP2	16	68026979	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	554539	68026979	22327774	85	26129											
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	69726159	69726159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NFAT5	NM_138713	exon13	c.2431delG	p.G811fs	AGCAGTGGAAGTG	.	70	17	66	0	.	90	-	69726159	G	-	69726159	7	5	198	1	0	1	0	1	0	0	0	0	10360	1349	47	0	2481	0	NFAT5	16	69726159	Frame_Shift_Del	DEL	G	TCGA-UB-A7MF-01A-11D-A33K-10	1699180	69726159	20628594	86	26130											
VAC14	55697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70820268	70820268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	VAC14	NM_018052	exon2	c.G105T	p.K35N	GACCAGCCTGGAG	.	58	31	66	0	.	227	A	70820268	C	A	70820268	3	1	198	1	0	0	0	0	1	0	0	0	17108	753	26	3	2315	3	VAC14	16	70820268	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	1094109	70820268	19534485	87	26131											
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81922840	81922840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PLCG2	NM_002661	exon10	c.A829T	p.M277L	GACACCATGCGTG	.	107	23	105	0	.	892	T	81922840	A	T	81922840	3	4	198	1	0	0	0	0	1	0	0	0	12036	217	8	4	863	4	PLCG2	16	81922840	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	11102572	81922840	8431913	88	26132											
EIF5A	1984	broad.mit.edu;mdanderson.org	37	17	7212998	7212998	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	EIF5A	NM_001143760	exon2	c.C134G	p.S45X	GGGCCTCAGCCAC	.	40	16	41	2	.	90	G	7212998	C	G	7212998	4	3	198	1	0	0	0	0	0	1	0	0	5041	838	29	4	140	4	EIF5A	17	7212998	Nonsense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		7212998	73982212	89	26133											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	TP53,NS,carcinoma,+1	TP53	NM_000546	exon6	c.G644T	p.S215I	ACCACACTATGTC	.	121	57	144	0	.	70225	A	7578205	C	A	7578205	3	1	198	1	0	0	0	0	1	0	0	0	16378	565	20	3	650	3	TP53	17	7578205	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	365207	7578205	73617005	90	26134											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10307686	10307686	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYH8	NM_002472	exon22	c.C2649A	p.L883L	TTTTAAGAGAGTG	.	93	29	133	0	.	101	T	10307686	G	T	10307686	2	4	198	1	0	0	0	0	0	0	0	1	10041	929	33	3		3	MYH8	17	10307686	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	2729481	10307686	70887524	91	26135											
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17696772	17696772	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RAI1	NM_030665	exon3	c.C510T	p.S170S	TCACTCCCTGCAC	.	81	14	149	0	.	91	T	17696772	C	T	17696772	2	4	198	1	0	0	0	0	0	0	0	1	13007	610	22	3		3	RAI1	17	17696772	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	7389086	17696772	63498438	92	26136											
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60493662	60493662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	EFCAB3	NM_001144933	exon12	c.G1445A	p.R482Q	GAAAACGGAAAGG	.	50	15	75	0	.	227	A	60493662	G	A	60493662	3	1	198	1	0	0	0	0	1	0	0	0	4935	1116	39	1	1491	1	EFCAB3	17	60493662	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	42796890	60493662	20701548	93	26137											
CYTH1	9267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76696458	76696458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CYTH1	NM_017456	exon7	c.G505A	p.A169T	GCTGGGCAAACGC	.	92	10	131	1	.	228	T	76696458	C	T	76696458	3	4	198	1	0	0	0	0	1	0	0	0	4203	710	25	3	719	3	CYTH1	17	76696458	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	16202796	76696458	4498752	94	26138											
B3GNTL1	146712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80915065	80915065	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	B3GNTL1	NM_001009905	exon10	c.922delG	p.D308fs	GAGAGTCCTCGTG	.	116	24	153	0	.	92	-	80915065	C	-	80915065	7	5	198	1	0	1	0	1	0	0	0	0	1265	855	30	0	175	0	B3GNTL1	17	80915065	Frame_Shift_Del	DEL	C	TCGA-UB-A7MF-01A-11D-A33K-10	4218607	80915065	280145	95	26139											
TMEM200C	645369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	5890394	5890394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_001080209	exon1	c.C1669G	p.Q557E	GCGTTTGACCAGC	.	49	8	50	0	.	.	C	5890394	G	C	5890394	3	2	198	1	0	0	0	0	1	0	0	0	16122	1299	45	4	200	4	TMEM200C	18	5890394	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		5890394	72186854	96	26140											
GNAL	2774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11753928	11753928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GNAL	NM_182978	exon4	c.A608G	p.D203G	TCACTGACTTTGA	.	207	91	184	0	.	228	G	11753928	A	G	11753928	3	3	198	1	0	0	0	0	1	0	0	0	6507	275	10	2	771	2	GNAL	18	11753928	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	5863534	11753928	66323320	97	26141											
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56033299	56033299	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NEDD4L	NM_001144967	exon21	c.A1902G	p.R634R	TCGGAGAATTATG	.	68	26	67	0	.	658	G	56033299	A	G	56033299	2	3	198	1	0	0	0	0	0	0	0	1	10311	243	9	2		2	NEDD4L	18	56033299	Silent	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	44279371	56033299	22043949	98	26142											
ELANE	1991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	855638	855638	+	Silent	SNP	C	C	T	rs146878885		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ELANE	NM_001972	exon4	c.C441T	p.N147N	GGGCAACGGGGTG	.	31	5	25	0	C|1.000;T|0.000	91	T	855638	C	T	855638	2	4	198	1	0	0	0	0	0	0	0	1	5048	535	19	1		1	ELANE	19	855638	Silent	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10		855638	58273345	99	26143											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	19	8996440	8996440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MUC16	NM_024690	exon61	c.C41132G	p.P13711R	GGGTCAGGGTGGT	.	90	12	120	0	.	566	C	8996440	G	C	8996440	3	2	198	1	0	0	0	0	1	0	0	0	9973	1000	35	4	2487	4	MUC16	19	8996440	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	8140802	8996440	50132543	100	26144											
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22575687	22575687	+	Missense_Mutation	SNP	C	C	A	rs140301665	alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF98	NM_001098626	exon4	c.G350T	p.R117L	TTTTCACGTCCAC	.	244	86	235	0	C|0.998;T|0.002	24	A	22575687	C	A	22575687	3	1	198	1	0	0	0	0	1	0	0	0	18200	536	19	1	1372	1	ZNF98	19	22575687	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	13579247	22575687	36553296	101	26145											
NOVA2	4858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46457193	46457193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NOVA2	NM_002516	exon3	c.C241T	p.R81W	ATACCCGCTCTGT	.	77	23	100	0	.	226	A	46457193	G	A	46457193	3	1	198	1	0	0	0	0	1	0	0	0	10555	1086	38	1	1245	1	NOVA2	19	46457193	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	23881506	46457193	12671790	102	26146											
DBP	1628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49136708	49136708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DBP	NM_001352	exon3	c.A755G	p.E252G	TTCTGCTCCTCCG	.	69	18	75	0	.	90	C	49136708	T	C	49136708	3	2	198	1	0	0	0	0	1	0	0	0	4256	1551	54	2	230	2	DBP	19	49136708	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	2679515	49136708	9992275	103	26147											
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52001422	52001422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SIGLEC12	NM_053003	exon5	c.A1255G	p.T419A	TCAGGGTCAGGCT	.	36	19	63	0	.	96	C	52001422	T	C	52001422	3	2	198	1	0	0	0	0	1	0	0	0	14308	1667	58	2	548	2	SIGLEC12	19	52001422	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	2864714	52001422	7127561	104	26148											
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52091277	52091277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF175	NM_007147	exon5	c.G1693A	p.G565R	GAATGTGGGAAAG	.	63	6	82	0	.	90	A	52091277	G	A	52091277	3	1	198	1	0	0	0	0	1	0	0	0	17742	1348	47	3	1707	3	ZNF175	19	52091277	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10	89855	52091277	7037706	105	26149											
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8862417	8862417	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PLCB1	NM_015192	exon32	c.T3572T	p.V1191V	ACCCTGGAAAAGT	.	159	35	166	1	.	297	T	8862417	G	T	8862417	2	4	198	1	0	0	0	0	0	0	0	1	12027	1174	41	3		3	PLCB1	20	8862417	Silent	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		8862417	54163103	106	26150											
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9520141	9520141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PAK7	NM_177990	exon10	c.G2128T	p.V710F	GGGGGACGATGCA	.	116	57	112	0	.	1434	A	9520141	C	A	9520141	3	1	198	1	0	0	0	0	1	0	0	0	11405	536	19	1	35	1	PAK7	20	9520141	Missense_Mutation	SNP	C	TCGA-UB-A7MF-01A-11D-A33K-10	657724	9520141	53505379	107	26151											
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu	37	20	39802162	39802162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PLCG1	NM_182811	exon28	c.A3382G	p.T1128A	CAGAAGACAGAGT	.	45	4	49	0	.	911	G	39802162	A	G	39802162	3	3	198	1	0	0	0	0	1	0	0	0	12035	275	10	2	3492	2	PLCG1	20	39802162	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	30282021	39802162	23223358	108	26152											
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768444	57768444	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF831	NM_178457	exon1	c.A2370G	p.R790R	TGCCCGAGGTGTG	.	77	33	81	1	.	126	G	57768444	A	G	57768444	2	3	198	1	0	0	0	0	0	0	0	1	18182	291	11	2		2	ZNF831	20	57768444	Silent	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10	17966282	57768444	5257076	109	26153											
COL6A2	1292	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47542411	47542411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	COL6A2	NM_058175	exon20	c.G1574A	p.G525E	CACAGGGAGAAAA	.	113	25	100	1	.	515	A	47542411	G	A	47542411	3	1	198	1	0	0	0	0	1	0	0	0	3700	1188	41	3	1648	3	COL6A2	21	47542411	Missense_Mutation	SNP	G	TCGA-UB-A7MF-01A-11D-A33K-10		47542411	587484	110	26154											
POTEH	23784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16287459	16287459	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	POTEH	NM_001136213	exon1	c.T427A	p.F143I	AGGGGAAGCAGTG	.	607	108	743	0	.	1	T	16287459	A	T	16287459	3	4	198	1	0	0	0	0	1	0	0	0	12267	72	3	4	1250	4	POTEH	22	16287459	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10		16287459	35017107	111	26155											
SF3A1	10291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30733037	30733037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SF3A1	NM_005877	exon13	c.A2084T	p.E695V	AACTCCTCCTCTG	.	106	41	109	0	.	157	A	30733037	T	A	30733037	3	1	198	1	0	0	0	0	1	0	0	0	14146	1551	54	4	313	4	SF3A1	22	30733037	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	14445578	30733037	20571529	112	26156											
APOBEC3D	140564	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39421641	39421641	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	APOBEC3D	NM_152426	exon4	c.T570C	p.Y190Y	CAATTATGCATCC	.	110	40	117	1	.	180	C	39421641	T	C	39421641	2	2	198	1	0	0	0	0	0	0	0	1	792	1471	51	2		2	APOBEC3D	22	39421641	Silent	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	8688604	39421641	11882925	113	26157											
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41257117	41257117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DNAJB7	NM_145174	exon1	c.A882C	p.K294N	CTTCTTTTTTTTC	.	159	62	149	0	.	227	G	41257117	T	G	41257117	3	3	198	1	0	0	0	0	1	0	0	0	4625	1838	64	5	51	5	DNAJB7	22	41257117	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	1835476	41257117	10047449	114	26158											
MOSPD2	158747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14915353	14915353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MOSPD2	NM_152581	exon5	c.A470G	p.N157S	GAATAAATAGCAT	.	93	82	94	0	.	130	G	14915353	A	G	14915353	3	3	198	1	0	0	0	0	1	0	0	0	9716	101	4	2	488	2	MOSPD2	23	14915353	Missense_Mutation	SNP	A	TCGA-UB-A7MF-01A-11D-A33K-10		14915353	140355207	115	26159											
SSX5	6758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48054255	48054255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SSX5	NM_021015	exon4	c.A228T	p.K76N	CCACTCTTTCTCA	.	145	105	178	0	.	90	A	48054255	T	A	48054255	3	1	198	1	0	0	0	0	1	0	0	0	15207	1606	56	4	481	4	SSX5	23	48054255	Missense_Mutation	SNP	T	TCGA-UB-A7MF-01A-11D-A33K-10	33138902	48054255	107216305	116	26160											
